If more than 50 genes/sequences are provided as input, then the associated running time can take some time. Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes. After processing you will be send an email with a link to the created phylogenetic tree.
The selection modi are exclusive: please choose either Gene selection or Species selection.
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000968', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p31690' => 'bna', 'A03p36040' => 'bna', 'A03p53730' => 'bna', 'A04p01410' => 'bna', 'A05p05420' => 'bna', 'A05p39630' => 'bna', 'A05p39640' => 'bna', 'A09p00970' => 'bna', 'A09p53060' => 'bna', 'A10p31890' => 'bna', 'Aa31LG10G15040' => 'aar', 'Aa31LG1G21090' => 'aar', 'Aa31LG1G26900' => 'aar', 'Aa31LG3G1820' => 'aar', 'Aa31LG5G1100' => 'aar', 'Aa31LG6G4740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2265' => 'aag', 'Actinidia07998' => 'ach', 'Actinidia11266' => 'ach', 'Actinidia12682' => 'ach', 'Actinidia26479' => 'ach', 'Actinidia31406' => 'ach', 'Actinidia32437' => 'ach', 'Actinidia38862' => 'ach', 'Ah.05g174230' => 'amhyb', 'Ah.05g179070' => 'amhyb', 'Ah.05g179090' => 'amhyb', 'Ah.12g059950' => 'amhyb', 'AL3G20480' => 'aly', 'AL4G44520' => 'aly', 'AL5G43110' => 'aly', 'AL6G13890' => 'aly', 'AL6G52620' => 'aly', 'AL7G30830' => 'aly', 'Aqoxy1G00899' => 'aox', 'Aqoxy5G04333' => 'aox', 'Aqoxy7G00641' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3IZ0NN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4EF6AW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W9P8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79GA3M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C43NQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFCU6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G95YVJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCHK29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LU1UG8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX91RN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGB4B1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8DA0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9H7JI' => 'arhy', 'AT3G09320' => 'ath', 'AT3G60800' => 'ath', 'AT4G00840' => 'ath', 'AT4G22750' => 'ath', 'AT5G04270' => 'ath', 'ATR0090G003' => 'atr', 'ATR0559G349' => 'atr', 'ATR0680G261' => 'atr', 'ATR0810G048' => 'atr', 'Atru.chr12.831' => 'acertr', 'Atru.chr5.303' => 'acertr', 'Atru.chr5.748' => 'acertr', 'Atru.chr8.1999' => 'acertr', 'Atru.chr9.1436' => 'acertr', 'AUR62004211' => 'cqu', 'AUR62004548' => 'cqu', 'AUR62013637' => 'cqu', 'AUR62022662' => 'cqu', 'AUR62025777' => 'cqu', 'AUR62042386' => 'cqu', 'BcaB01g02310' => 'bca', 'BcaB01g06062' => 'bca', 'BcaB02g08975' => 'bca', 'BcaB02g08980' => 'bca', 'BcaC01g04228' => 'bca', 'BcaC01g06830' => 'bca', 'BcaC02g10186' => 'bca', 'BcaC02g12214' => 'bca', 'BcaC04g24101' => 'bca', 'BcaC05g29520' => 'bca', 'BcaC05g29661' => 'bca', 'BcaC06g32130' => 'bca', 'BcaC06g32131' => 'bca', 'BcaC07g40601' => 'bca', 'BcaC07g42641' => 'bca', 'BcaNung01038' => 'bca', 'BcaNung01676' => 'bca', 'BcaNung02480' => 'bca', 'BcaNung07376' => 'bca', 'BolC3t16146H' => 'bol', 'BolC3t16637H' => 'bol', 'BolC4t22257H' => 'bol', 'BolC4t24728H' => 'bol', 'BolC5t34517H' => 'bol', 'BolC7t45703H' => 'bol', 'BolC8t51166H' => 'bol', 'BolC9t53038H' => 'bol', 'BolC9t60000H' => 'bol', 'BraA01t01345Z' => 'bra', 'BraA01t01346Z' => 'bra', 'BraA01t01348Z' => 'bra', 'BraA03t12347Z' => 'bra', 'BraA03t12775Z' => 'bra', 'BraA03t14439Z' => 'bra', 'BraA04t15860Z' => 'bra', 'BraA05t19511Z' => 'bra', 'BraA05t22746Z' => 'bra', 'BraA09t35767Z' => 'bra', 'BraA09t40732Z' => 'bra', 'BraA10t45233Z' => 'bra', 'C03p38720' => 'bna', 'C03p43680' => 'bna', 'C04p06350' => 'bna', 'C04p31800' => 'bna', 'C05p58680' => 'bna', 'C07p52110' => 'bna', 'C08p35760' => 'bna', 'C09p01050' => 'bna', 'C09p72600' => 'bna', 'CAN.G106.2' => 'can', 'CAN.G1482.1' => 'can', 'CAN.G324.12' => 'can', 'CAN.G388.20' => 'can', 'CAN.G412.7' => 'can', 'CAN.G694.32' => 'can', 'CAN.G92.12' => 'can', 'CANSAT11G2353' => 'cansat', 'CANSAT21G1398' => 'cansat', 'CANSAT56G2456' => 'cansat', 'CANSAT56G3031' => 'cansat', 'CANSAT56G4539' => 'cansat', 'CARHR083680' => 'chi', 'CARHR171190' => 'chi', 'CARHR209010' => 'chi', 'CARHR229680' => 'chi', 'CARHR249490' => 'chi', 'Carub.0003s0844' => 'cru', 'Carub.0005s2755' => 'cru', 'Carub.0006s0322' => 'cru', 'Carub.0006s3586' => 'cru', 'Carub.0007s1855' => 'cru', 'Ca_07808_v3' => 'car', 'Ca_09535_v3' => 'car', 'Ca_10548_v3' => 'car', 'Ca_19913_v3' => 'car', 'Ca_19916_v3' => 'car', 'Ca_19975_v3' => 'car', 'CBR_g22876' => 'cbr', 'CBR_g22879' => 'cbr', 'CBR_g38491' => 'cbr', 'CBR_g54185' => 'cbr', 'CBR_g54190' => 'cbr', 'Cc02_g11020' => 'ccan', 'Cc02_g23920' => 'ccan', 'Cc02_g39860' => 'ccan', 'Cc02_g39870' => 'ccan', 'Cc03_g06760' => 'ccan', 'Cc06_g02450' => 'ccan', 'Cc09_g09450' => 'ccan', 'CDE02G1959' => 'cde', 'CDE04G0600' => 'cde', 'CDE07G1996' => 'cde', 'CDE07G2078' => 'cde', 'CDE11G0611' => 'cde', 'Cfa001683' => 'cfa', 'Cfa001734' => 'cfa', 'Cfa001737' => 'cfa', 'Cfa003751' => 'cfa', 'Cfa012019' => 'cfa', 'Cfa017353' => 'cfa', 'Cfa017732' => 'cfa', 'Cfa022464' => 'cfa', 'Ciclev10012400m.g' => 'ccl', 'Ciclev10021242m.g' => 'ccl', 'Ciclev10021302m.g' => 'ccl', 'Ciclev10021463m.g' => 'ccl', 'Ciclev10032359m.g' => 'ccl', 'CiPaw.01G081000' => 'cil', 'CiPaw.01G262500' => 'cil', 'CiPaw.01G269800' => 'cil', 'CiPaw.02G168400' => 'cil', 'CiPaw.05G119500' => 'cil', 'CiPaw.11G147300' => 'cil', 'ClCG01G003630' => 'cla', 'ClCG05G000510' => 'cla', 'ClCG05G002300' => 'cla', 'ClCG08G007650' => 'cla', 'ClCG10G021250' => 'cla', 'COL.COLO4_06218' => 'col', 'COL.COLO4_12538' => 'col', 'COL.COLO4_14775' => 'col', 'COL.COLO4_23875' => 'col', 'Cpa.g.sc141.16' => 'cpa', 'Cpa.g.sc169.16' => 'cpa', 'Cpa.g.sc244.4' => 'cpa', 'Cpa.g.sc244.5' => 'cpa', 'Cpa.g.sc29.87' => 'cpa', 'Cpa.g.sc53.115' => 'cpa', 'Cre03.g207502' => 'cre', 'Cre06.g277000' => 'cre', 'Cre09.g394050' => 'cre', 'CsaV3_3G007680' => 'csa', 'CsaV3_3G009710' => 'csa', 'CsaV3_3G034790' => 'csa', 'CsaV3_5G003750' => 'csa', 'CsaV3_6G036620' => 'csa', 'CSS0002288' => 'camsi', 'CSS0011250' => 'camsi', 'CSS0021619' => 'camsi', 'CSS0046701' => 'camsi', 'DCAR_006420' => 'dca', 'DCAR_006865' => 'dca', 'DCAR_008558' => 'dca', 'DCAR_028754' => 'dca', 'DCAR_028755' => 'dca', 'Dinv31218' => 'din', 'Dinv32371' => 'din', 'Dinv34250' => 'din', 'Dinv37156' => 'din', 'Dinv43704' => 'din', 'Duzib093G1811' => 'dzi', 'Duzib106G1622' => 'dzi', 'Duzib114G0504' => 'dzi', 'Duzib128G0338' => 'dzi', 'Duzib128G1577' => 'dzi', 'Duzib133G0104' => 'dzi', 'Duzib133G1080' => 'dzi', 'Duzib138G0324' => 'dzi', 'Duzib138G0394' => 'dzi', 'Duzib205G0122' => 'dzi', 'Duzib268G1020' => 'dzi', 'Duzib268G1359' => 'dzi', 'ECA232G3929' => 'eca', 'ECA236G2210' => 'eca', 'ECA236G2287' => 'eca', 'ECA240G4568' => 'eca', 'ECA247G0894' => 'eca', 'EL10Ac1g00200' => 'bvu', 'EL10Ac1g00886' => 'bvu', 'EL10As1g23091' => 'bvu', 'EL10As1g23092' => 'bvu', 'Eucgr.A01284' => 'egr', 'Eucgr.A01285' => 'egr', 'Eucgr.D02456' => 'egr', 'Eucgr.E00018' => 'egr', 'Eucgr.E01439' => 'egr', 'Eucgr.G02859' => 'egr', 'FAN01G0168' => 'fan', 'FAN01G0453' => 'fan', 'FAN01G2761' => 'fan', 'FAN02G1239' => 'fan', 'FAN03G0645' => 'fan', 'FAN03G2707' => 'fan', 'FAN03G2978' => 'fan', 'FAN04G0227' => 'fan', 'FAN06G0091' => 'fan', 'FAN06G1418' => 'fan', 'FAN06G1512' => 'fan', 'FAN06G1986' => 'fan', 'FAN06G2905' => 'fan', 'FAN06G4325' => 'fan', 'FAN08G0033' => 'fan', 'FAN09G0642' => 'fan', 'FAN10G1763' => 'fan', 'FAN10G2026' => 'fan', 'FAN10G2513' => 'fan', 'FAN10G3402' => 'fan', 'FAN10G3564' => 'fan', 'FAN10G3987' => 'fan', 'FAN13G1490' => 'fan', 'FAN14G5857' => 'fan', 'FAN18G1188' => 'fan', 'FvH4_5g00750' => 'fve', 'FvH4_6g13410' => 'fve', 'FvH4_7g11740' => 'fve', 'FvH4_7g17410' => 'fve', 'FvH4_7g18860' => 'fve', 'Glyma.01G099100' => 'gma', 'Glyma.01G142300' => 'gma', 'Glyma.03G025500' => 'gma', 'Glyma.03G069700' => 'gma', 'Glyma.03G260000' => 'gma', 'Glyma.09G269800' => 'gma', 'Glyma.10G208700' => 'gma', 'Glyma.18G220400' => 'gma', 'Glyma.20G182000' => 'gma', 'Gohir.A01G221726' => 'ghi', 'Gohir.A07G134600' => 'ghi', 'Gohir.A07G146000' => 'ghi', 'Gohir.A08G173900' => 'ghi', 'Gohir.A09G194900' => 'ghi', 'Gohir.A10G204100' => 'ghi', 'Gohir.A11G080600' => 'ghi', 'Gohir.A11G327500' => 'ghi', 'Gohir.A12G101800' => 'ghi', 'Gohir.D01G211200' => 'ghi', 'Gohir.D07G139200' => 'ghi', 'Gohir.D07G152100' => 'ghi', 'Gohir.D08G192600' => 'ghi', 'Gohir.D09G189200' => 'ghi', 'Gohir.D10G212000' => 'ghi', 'Gohir.D11G085200' => 'ghi', 'Gohir.D11G346400' => 'ghi', 'Gohir.D12G104800' => 'ghi', 'Gorai.001G151300' => 'gra', 'Gorai.001G174100' => 'gra', 'Gorai.002G257000' => 'gra', 'Gorai.004G202600' => 'gra', 'Gorai.007G090900' => 'gra', 'Gorai.007G376700' => 'gra', 'Gorai.008G114100' => 'gra', 'Gorai.011G237900' => 'gra', 'GSVIVG01005450001' => 'vvi', 'GSVIVG01016232001' => 'vvi', 'GSVIVG01026157001' => 'vvi', 'GSVIVG01027419001' => 'vvi', 'GSVIVG01027631001' => 'vvi', 'GSVIVG01034143001' => 'vvi', 'HanXRQChr03g0093921' => 'han', 'HanXRQChr04g0120001' => 'han', 'HanXRQChr04g0122561' => 'han', 'HanXRQChr09g0246851' => 'han', 'HanXRQChr10g0293311' => 'han', 'HanXRQChr13g0425231' => 'han', 'HanXRQChr16g0532571' => 'han', 'Haze_09050' => 'cav', 'Haze_15715' => 'cav', 'Haze_15716' => 'cav', 'Haze_16803' => 'cav', 'Haze_16850' => 'cav', 'Hma1.2p1_0301F.1_g118655' => 'hma', 'Hma1.2p1_0309F.1_g120590' => 'hma', 'Hma1.2p1_0936F.1_g238900' => 'hma', 'Hma1.2p1_3552F.1_g336740' => 'hma', 'HPP92_003520' => 'vpl', 'HPP92_006628' => 'vpl', 'HPP92_006645' => 'vpl', 'HPP92_014669' => 'vpl', 'HPP92_015077' => 'vpl', 'Hund16742' => 'sun', 'Hund17022' => 'sun', 'Lalb_Chr02g0152131' => 'lal', 'Lalb_Chr05g0225371' => 'lal', 'Lalb_Chr07g0189841' => 'lal', 'Lalb_Chr07g0192961' => 'lal', 'Lalb_Chr12g0208221' => 'lal', 'Lalb_Chr13g0291211' => 'lal', 'Lalb_Chr13g0291781' => 'lal', 'Lalb_Chr18g0044651' => 'lal', 'Lalb_Chr21g0313731' => 'lal', 'Lj1g0022533' => 'lja', 'Lj2A18T50' => 'lonja', 'Lj2A92G93' => 'lonja', 'Lj3A965T73' => 'lonja', 'Lj3g0000673' => 'lja', 'Lj3g0002666' => 'lja', 'Lj4g0016985' => 'lja', 'Lj5g0003625' => 'lja', 'Lj7A529G36' => 'lonja', 'Lj9A569T49' => 'lonja', 'Lj9A604T63' => 'lonja', 'Lsat_1_v5_gn_3_132060' => 'lsa', 'Lsat_1_v5_gn_4_68941' => 'lsa', 'Lsat_1_v5_gn_5_95580' => 'lsa', 'Lsat_1_v5_gn_7_161' => 'lsa', 'Lsat_1_v5_gn_7_7041' => 'lsa', 'Lsat_1_v5_gn_9_33481' => 'lsa', 'Lsat_1_v5_gn_9_68260' => 'lsa', 'Manes.01G073100' => 'mes', 'Manes.01G266300' => 'mes', 'Manes.02G033300' => 'mes', 'Manes.05G017900' => 'mes', 'Manes.05G046100' => 'mes', 'Manes.08G080900' => 'mes', 'Manes.10G049400' => 'mes', 'Mapoly0009s0186' => 'mpo', 'Mapoly0036s0118' => 'mpo', 'Mapoly0101s0046' => 'mpo', 'MBI04_g30218_MAGBIO' => 'mbi', 'MBI04_g35564_MAGBIO' => 'mbi', 'MBI12_g34011_MAGBIO' => 'mbi', 'MBI14_g04655_MAGBIO' => 'mbi', 'MCO07G653' => 'mco', 'MCO10G173' => 'mco', 'MD01G1087100' => 'mdo', 'MD01G1104200' => 'mdo', 'MD02G1205100' => 'mdo', 'MD04G1079200' => 'mdo', 'MD04G1131400' => 'mdo', 'MD07G1121600' => 'mdo', 'MD07G1157300' => 'mdo', 'MD07G1171000' => 'mdo', 'MD12G1144500' => 'mdo', 'Medtr1g094610' => 'mtr', 'Medtr4g021795' => 'mtr', 'Medtr4g023760' => 'mtr', 'Medtr7g118050' => 'mtr', 'MELO3C005582.2' => 'cme', 'MELO3C005989.2' => 'cme', 'MELO3C006192.2' => 'cme', 'MELO3C009248.2' => 'cme', 'MELO3C019817.2' => 'cme', 'Migut.B01625' => 'egut', 'Migut.B01915' => 'egut', 'Migut.F01721' => 'egut', 'Migut.J00314' => 'egut', 'MSTRG.20742' => 'ama', 'MSTRG.8134' => 'ama', 'Nitab4.5_0000096g0010' => 'nta', 'Nitab4.5_0000202g0030' => 'nta', 'Nitab4.5_0000216g0370' => 'nta', 'Nitab4.5_0000457g0230' => 'nta', 'Nitab4.5_0001702g0170' => 'nta', 'Nitab4.5_0003607g0010' => 'nta', 'Nitab4.5_0004917g0020' => 'nta', 'Nitab4.5_0007059g0010' => 'nta', 'Nitab4.5_0007184g0010' => 'nta', 'Nitab4.5_0007346g0020' => 'nta', 'Nn1g00410' => 'nnu', 'Nn1g01252' => 'nnu', 'Nn2g11168' => 'nnu', 'Nn2g13403' => 'nnu', 'Nn2g13760' => 'nnu', 'Nn4g26380' => 'nnu', 'Oeu000806.2' => 'oeu', 'Oeu005788.1' => 'oeu', 'Oeu006900.3' => 'oeu', 'Oeu007797.1' => 'oeu', 'Oeu011932.1' => 'oeu', 'Oeu022739.1' => 'oeu', 'Oeu037918.1' => 'oeu', 'Oeu055490.2' => 'oeu', 'Os01g0844400' => 'osa', 'Os02g0819100' => 'osa', 'Os03g0804300' => 'osa', 'Os05g0458000' => 'osa', 'Os07g0467800' => 'osa', 'Os12g0602200' => 'osa', 'Peaxi162Scf00013g03444' => 'pax', 'Peaxi162Scf00094g01120' => 'pax', 'Peaxi162Scf00191g01211' => 'pax', 'Peaxi162Scf00238g01110' => 'pax', 'Peaxi162Scf00330g00719' => 'pax', 'Peaxi162Scf00627g00018' => 'pax', 'PGR031G2686' => 'pgr', 'PGR042G0809' => 'pgr', 'PGR142G0193' => 'pgr', 'PGSC0003DMG400011066' => 'stu', 'PGSC0003DMG400012041' => 'stu', 'PGSC0003DMG400013678' => 'stu', 'PGSC0003DMG400023477' => 'stu', 'PGSC0003DMG400025956' => 'stu', 'PGSC0003DMG401019151' => 'stu', 'Phvul.006G116400' => 'pvu', 'Phvul.007G097300' => 'pvu', 'Phvul.010G015000' => 'pvu', 'Phvul.010G083900' => 'pvu', 'Potri.001G117100' => 'ptr', 'Potri.002G147300' => 'ptr', 'Potri.003G115600' => 'ptr', 'Potri.006G087400' => 'ptr', 'Potri.010G226100' => 'ptr', 'Potri.014G069200' => 'ptr', 'Potri.014G104000' => 'ptr', 'Potri.016G100200' => 'ptr', 'Pp3c10_20450' => 'ppa', 'Pp3c1_42400' => 'ppa', 'Pp3c3_24390' => 'ppa', 'Pp3c3_2860' => 'ppa', 'PRCOL_00003193' => 'pco', 'Prupe.2G144500' => 'ppe', 'Prupe.2G195700' => 'ppe', 'Prupe.2G209800' => 'ppe', 'Prupe.5G080000' => 'ppe', 'Prupe.6G257900' => 'ppe', 'Psat3g001160' => 'psa', 'Psat6g181880' => 'psa', 'Psat7g233720' => 'psa', 'PSO063G7587' => 'pso', 'PSO339G2145' => 'pso', 'PSO339G3369' => 'pso', 'PSO478G2747' => 'pso', 'PSO513G0140' => 'pso', 'PSO782G1614' => 'pso', 'PSO782G4889' => 'pso', 'PSO782G5485' => 'pso', 'PSO801G0241' => 'pso', 'QL07p048854' => 'qlo', 'QL08p046745' => 'qlo', 'QL08p052606' => 'qlo', 'QL08p053414' => 'qlo', 'QL08p054868' => 'qlo', 'RcHm_v2.0_Chr1g0350251' => 'rch', 'RcHm_v2.0_Chr1g0360851' => 'rch', 'RcHm_v2.0_Chr1g0362791' => 'rch', 'RcHm_v2.0_Chr3g0466281' => 'rch', 'RcHm_v2.0_Chr7g0201481' => 'rch', 'Rhsim01G0148600' => 'rsi', 'Rhsim05G0194400' => 'rsi', 'Rhsim07G0000700' => 'rsi', 'Rhsim07G0000800' => 'rsi', 'Rhsim07G0027900' => 'rsi', 'Rhsim09G0149500' => 'rsi', 'RhsimUnG0186900' => 'rsi', 'Sabra01G0089900' => 'sbr', 'Sabra02G0114700' => 'sbr', 'Sabra02G0116300' => 'sbr', 'Sabra03G0080100' => 'sbr', 'Sabra08G0024300' => 'sbr', 'Sabra10G0174300' => 'sbr', 'Sabra14G0048900' => 'sbr', 'Sabra14G0076500' => 'sbr', 'SalBow5G2513' => 'sbo', 'Sc01g0002300' => 'sci', 'Sc01g0004450' => 'sci', 'Sc06g0001680' => 'sci', 'Sc23g0003580' => 'sci', 'Sed0000913' => 'sed', 'Sed0001655' => 'sed', 'Sed0007745' => 'sed', 'Sed0010951' => 'sed', 'Sed0017599' => 'sed', 'Sed0021405' => 'sed', 'Sed0022810' => 'sed', 'SEGI_07099' => 'sgi', 'SEGI_11931' => 'sgi', 'SEGI_13187' => 'sgi', 'SEGI_29958' => 'sgi', 'SEGI_36351' => 'sgi', 'SGA_v2.0_scaffold126G33770' => 'sas', 'SGA_v2.0_scaffold153G37003' => 'sas', 'SGA_v2.0_scaffold2G01359' => 'sas', 'SGA_v2.0_scaffold5G03064' => 'sas', 'SGA_v2.0_scaffold95G28903' => 'sas', 'SHI12701' => 'shi', 'SHI26410' => 'shi', 'SHI38997' => 'shi', 'SHI53759' => 'shi', 'SHI53886' => 'shi', 'SHI54714' => 'shi', 'SMO011G0041' => 'smo', 'SMO146G0251' => 'smo', 'SMO160G0004' => 'smo', 'SMO174G0057' => 'smo', 'SMO244G0089' => 'smo', 'SMO296G0011' => 'smo', 'Solyc01g091280.3' => 'sly', 'Solyc05g047610.3' => 'sly', 'Solyc05g047640.3' => 'sly', 'Solyc05g055630.3' => 'sly', 'Solyc10g018160.2' => 'sly', 'Solyc10g084820.2' => 'sly', 'Solyc10g086565.2' => 'sly', 'Sopen01g037030' => 'spe', 'Sopen05g027920' => 'spe', 'Sopen05g034070' => 'spe', 'Sopen10g007260' => 'spe', 'Sopen10g034260' => 'spe', 'Sopen10g035950' => 'spe', 'Sp3g07710' => 'spa', 'Sp4g27420' => 'spa', 'Sp5g02450' => 'spa', 'Sp6g01280' => 'spa', 'Sp6g38480' => 'spa', 'Sp7g20780' => 'spa', 'TAR374G1413' => 'tar', 'TAR623G1777' => 'tar', 'TAR629G2370' => 'tar', 'TAR633G1759' => 'tar', 'TAR636G3387' => 'tar', 'THA.LOC104802447' => 'tha', 'THA.LOC104813916' => 'tha', 'THA.LOC104816423' => 'tha', 'THA.LOC104817246' => 'tha', 'THA.LOC104825895' => 'tha', 'Thecc.01G335200' => 'tca', 'Thecc.01G377400' => 'tca', 'Thecc.03G262200' => 'tca', 'Thecc.05G036800' => 'tca', 'Thecc.10G080500' => 'tca', 'Thecc.10G080800' => 'tca', 'Thhalv10001560m.g' => 'esa', 'Thhalv10006120m.g' => 'esa', 'Thhalv10014375m.g' => 'esa', 'Thhalv10021264m.g' => 'esa', 'Thhalv10028856m.g' => 'esa', 'TPR.G1914' => 'tpr', 'TPR.G4757' => 'tpr', 'TPR.G5595' => 'tpr', 'TWI14G0952' => 'twi', 'TWI14G1307' => 'twi', 'TWI38G2143' => 'twi', 'TWI59G0826' => 'twi', 'TWI77G0527' => 'twi', 'TWI81G0150' => 'twi', 'unitig_21.g21018' => 'ugi', 'unitig_26.g9725' => 'ugi', 'unitig_744.g24653' => 'ugi', 'unitig_749.g13778' => 'ugi', 'unitig_899.g15035' => 'ugi', 'vmacro04296' => 'vma', 'vmacro04852' => 'vma', 'vmacro13404' => 'vma', 'vmacro20169' => 'vma', 'vmacro21014' => 'vma', 'VMungo0331G0237' => 'vmu', 'VMungo0331G0706' => 'vmu', 'VMungo0331G1361' => 'vmu', 'VMungo0331G1489' => 'vmu', 'VMungo0540G1037' => 'vmu', 'VMungo0720G2487' => 'vmu', 'VMungo0720G2721' => 'vmu', 'Zm00001eb086860' => 'zma', 'Zm00001eb104760' => 'zma', 'Zm00001eb148220' => 'zma', 'Zm00001eb259030' => 'zma', 'Zm00001eb289590' => 'zma', 'Zm00001eb420150' => 'zma' ), 'gf_id' => 'HOM05D000968', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000968' ), 'data_identifier' => 'HOM05D000968', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000968', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p31690' => 'bna', 'A03p36040' => 'bna', 'A03p53730' => 'bna', 'A04p01410' => 'bna', 'A05p05420' => 'bna', 'A05p39630' => 'bna', 'A05p39640' => 'bna', 'A09p00970' => 'bna', 'A09p53060' => 'bna', 'A10p31890' => 'bna', 'Aa31LG10G15040' => 'aar', 'Aa31LG1G21090' => 'aar', 'Aa31LG1G26900' => 'aar', 'Aa31LG3G1820' => 'aar', 'Aa31LG5G1100' => 'aar', 'Aa31LG6G4740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2265' => 'aag', 'Actinidia07998' => 'ach', 'Actinidia11266' => 'ach', 'Actinidia12682' => 'ach', 'Actinidia26479' => 'ach', 'Actinidia31406' => 'ach', 'Actinidia32437' => 'ach', 'Actinidia38862' => 'ach', 'Ah.05g174230' => 'amhyb', 'Ah.05g179070' => 'amhyb', 'Ah.05g179090' => 'amhyb', 'Ah.12g059950' => 'amhyb', 'AL3G20480' => 'aly', 'AL4G44520' => 'aly', 'AL5G43110' => 'aly', 'AL6G13890' => 'aly', 'AL6G52620' => 'aly', 'AL7G30830' => 'aly', 'Aqoxy1G00899' => 'aox', 'Aqoxy5G04333' => 'aox', 'Aqoxy7G00641' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3IZ0NN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4EF6AW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W9P8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79GA3M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C43NQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFCU6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G95YVJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCHK29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LU1UG8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX91RN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGB4B1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8DA0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9H7JI' => 'arhy', 'AT3G09320' => 'ath', 'AT3G60800' => 'ath', 'AT4G00840' => 'ath', 'AT4G22750' => 'ath', 'AT5G04270' => 'ath', 'ATR0090G003' => 'atr', 'ATR0559G349' => 'atr', 'ATR0680G261' => 'atr', 'ATR0810G048' => 'atr', 'Atru.chr12.831' => 'acertr', 'Atru.chr5.303' => 'acertr', 'Atru.chr5.748' => 'acertr', 'Atru.chr8.1999' => 'acertr', 'Atru.chr9.1436' => 'acertr', 'AUR62004211' => 'cqu', 'AUR62004548' => 'cqu', 'AUR62013637' => 'cqu', 'AUR62022662' => 'cqu', 'AUR62025777' => 'cqu', 'AUR62042386' => 'cqu', 'BcaB01g02310' => 'bca', 'BcaB01g06062' => 'bca', 'BcaB02g08975' => 'bca', 'BcaB02g08980' => 'bca', 'BcaC01g04228' => 'bca', 'BcaC01g06830' => 'bca', 'BcaC02g10186' => 'bca', 'BcaC02g12214' => 'bca', 'BcaC04g24101' => 'bca', 'BcaC05g29520' => 'bca', 'BcaC05g29661' => 'bca', 'BcaC06g32130' => 'bca', 'BcaC06g32131' => 'bca', 'BcaC07g40601' => 'bca', 'BcaC07g42641' => 'bca', 'BcaNung01038' => 'bca', 'BcaNung01676' => 'bca', 'BcaNung02480' => 'bca', 'BcaNung07376' => 'bca', 'BolC3t16146H' => 'bol', 'BolC3t16637H' => 'bol', 'BolC4t22257H' => 'bol', 'BolC4t24728H' => 'bol', 'BolC5t34517H' => 'bol', 'BolC7t45703H' => 'bol', 'BolC8t51166H' => 'bol', 'BolC9t53038H' => 'bol', 'BolC9t60000H' => 'bol', 'BraA01t01345Z' => 'bra', 'BraA01t01346Z' => 'bra', 'BraA01t01348Z' => 'bra', 'BraA03t12347Z' => 'bra', 'BraA03t12775Z' => 'bra', 'BraA03t14439Z' => 'bra', 'BraA04t15860Z' => 'bra', 'BraA05t19511Z' => 'bra', 'BraA05t22746Z' => 'bra', 'BraA09t35767Z' => 'bra', 'BraA09t40732Z' => 'bra', 'BraA10t45233Z' => 'bra', 'C03p38720' => 'bna', 'C03p43680' => 'bna', 'C04p06350' => 'bna', 'C04p31800' => 'bna', 'C05p58680' => 'bna', 'C07p52110' => 'bna', 'C08p35760' => 'bna', 'C09p01050' => 'bna', 'C09p72600' => 'bna', 'CAN.G106.2' => 'can', 'CAN.G1482.1' => 'can', 'CAN.G324.12' => 'can', 'CAN.G388.20' => 'can', 'CAN.G412.7' => 'can', 'CAN.G694.32' => 'can', 'CAN.G92.12' => 'can', 'CANSAT11G2353' => 'cansat', 'CANSAT21G1398' => 'cansat', 'CANSAT56G2456' => 'cansat', 'CANSAT56G3031' => 'cansat', 'CANSAT56G4539' => 'cansat', 'CARHR083680' => 'chi', 'CARHR171190' => 'chi', 'CARHR209010' => 'chi', 'CARHR229680' => 'chi', 'CARHR249490' => 'chi', 'Carub.0003s0844' => 'cru', 'Carub.0005s2755' => 'cru', 'Carub.0006s0322' => 'cru', 'Carub.0006s3586' => 'cru', 'Carub.0007s1855' => 'cru', 'Ca_07808_v3' => 'car', 'Ca_09535_v3' => 'car', 'Ca_10548_v3' => 'car', 'Ca_19913_v3' => 'car', 'Ca_19916_v3' => 'car', 'Ca_19975_v3' => 'car', 'CBR_g22876' => 'cbr', 'CBR_g22879' => 'cbr', 'CBR_g38491' => 'cbr', 'CBR_g54185' => 'cbr', 'CBR_g54190' => 'cbr', 'Cc02_g11020' => 'ccan', 'Cc02_g23920' => 'ccan', 'Cc02_g39860' => 'ccan', 'Cc02_g39870' => 'ccan', 'Cc03_g06760' => 'ccan', 'Cc06_g02450' => 'ccan', 'Cc09_g09450' => 'ccan', 'CDE02G1959' => 'cde', 'CDE04G0600' => 'cde', 'CDE07G1996' => 'cde', 'CDE07G2078' => 'cde', 'CDE11G0611' => 'cde', 'Cfa001683' => 'cfa', 'Cfa001734' => 'cfa', 'Cfa001737' => 'cfa', 'Cfa003751' => 'cfa', 'Cfa012019' => 'cfa', 'Cfa017353' => 'cfa', 'Cfa017732' => 'cfa', 'Cfa022464' => 'cfa', 'Ciclev10012400m.g' => 'ccl', 'Ciclev10021242m.g' => 'ccl', 'Ciclev10021302m.g' => 'ccl', 'Ciclev10021463m.g' => 'ccl', 'Ciclev10032359m.g' => 'ccl', 'CiPaw.01G081000' => 'cil', 'CiPaw.01G262500' => 'cil', 'CiPaw.01G269800' => 'cil', 'CiPaw.02G168400' => 'cil', 'CiPaw.05G119500' => 'cil', 'CiPaw.11G147300' => 'cil', 'ClCG01G003630' => 'cla', 'ClCG05G000510' => 'cla', 'ClCG05G002300' => 'cla', 'ClCG08G007650' => 'cla', 'ClCG10G021250' => 'cla', 'COL.COLO4_06218' => 'col', 'COL.COLO4_12538' => 'col', 'COL.COLO4_14775' => 'col', 'COL.COLO4_23875' => 'col', 'Cpa.g.sc141.16' => 'cpa', 'Cpa.g.sc169.16' => 'cpa', 'Cpa.g.sc244.4' => 'cpa', 'Cpa.g.sc244.5' => 'cpa', 'Cpa.g.sc29.87' => 'cpa', 'Cpa.g.sc53.115' => 'cpa', 'Cre03.g207502' => 'cre', 'Cre06.g277000' => 'cre', 'Cre09.g394050' => 'cre', 'CsaV3_3G007680' => 'csa', 'CsaV3_3G009710' => 'csa', 'CsaV3_3G034790' => 'csa', 'CsaV3_5G003750' => 'csa', 'CsaV3_6G036620' => 'csa', 'CSS0002288' => 'camsi', 'CSS0011250' => 'camsi', 'CSS0021619' => 'camsi', 'CSS0046701' => 'camsi', 'DCAR_006420' => 'dca', 'DCAR_006865' => 'dca', 'DCAR_008558' => 'dca', 'DCAR_028754' => 'dca', 'DCAR_028755' => 'dca', 'Dinv31218' => 'din', 'Dinv32371' => 'din', 'Dinv34250' => 'din', 'Dinv37156' => 'din', 'Dinv43704' => 'din', 'Duzib093G1811' => 'dzi', 'Duzib106G1622' => 'dzi', 'Duzib114G0504' => 'dzi', 'Duzib128G0338' => 'dzi', 'Duzib128G1577' => 'dzi', 'Duzib133G0104' => 'dzi', 'Duzib133G1080' => 'dzi', 'Duzib138G0324' => 'dzi', 'Duzib138G0394' => 'dzi', 'Duzib205G0122' => 'dzi', 'Duzib268G1020' => 'dzi', 'Duzib268G1359' => 'dzi', 'ECA232G3929' => 'eca', 'ECA236G2210' => 'eca', 'ECA236G2287' => 'eca', 'ECA240G4568' => 'eca', 'ECA247G0894' => 'eca', 'EL10Ac1g00200' => 'bvu', 'EL10Ac1g00886' => 'bvu', 'EL10As1g23091' => 'bvu', 'EL10As1g23092' => 'bvu', 'Eucgr.A01284' => 'egr', 'Eucgr.A01285' => 'egr', 'Eucgr.D02456' => 'egr', 'Eucgr.E00018' => 'egr', 'Eucgr.E01439' => 'egr', 'Eucgr.G02859' => 'egr', 'FAN01G0168' => 'fan', 'FAN01G0453' => 'fan', 'FAN01G2761' => 'fan', 'FAN02G1239' => 'fan', 'FAN03G0645' => 'fan', 'FAN03G2707' => 'fan', 'FAN03G2978' => 'fan', 'FAN04G0227' => 'fan', 'FAN06G0091' => 'fan', 'FAN06G1418' => 'fan', 'FAN06G1512' => 'fan', 'FAN06G1986' => 'fan', 'FAN06G2905' => 'fan', 'FAN06G4325' => 'fan', 'FAN08G0033' => 'fan', 'FAN09G0642' => 'fan', 'FAN10G1763' => 'fan', 'FAN10G2026' => 'fan', 'FAN10G2513' => 'fan', 'FAN10G3402' => 'fan', 'FAN10G3564' => 'fan', 'FAN10G3987' => 'fan', 'FAN13G1490' => 'fan', 'FAN14G5857' => 'fan', 'FAN18G1188' => 'fan', 'FvH4_5g00750' => 'fve', 'FvH4_6g13410' => 'fve', 'FvH4_7g11740' => 'fve', 'FvH4_7g17410' => 'fve', 'FvH4_7g18860' => 'fve', 'Glyma.01G099100' => 'gma', 'Glyma.01G142300' => 'gma', 'Glyma.03G025500' => 'gma', 'Glyma.03G069700' => 'gma', 'Glyma.03G260000' => 'gma', 'Glyma.09G269800' => 'gma', 'Glyma.10G208700' => 'gma', 'Glyma.18G220400' => 'gma', 'Glyma.20G182000' => 'gma', 'Gohir.A01G221726' => 'ghi', 'Gohir.A07G134600' => 'ghi', 'Gohir.A07G146000' => 'ghi', 'Gohir.A08G173900' => 'ghi', 'Gohir.A09G194900' => 'ghi', 'Gohir.A10G204100' => 'ghi', 'Gohir.A11G080600' => 'ghi', 'Gohir.A11G327500' => 'ghi', 'Gohir.A12G101800' => 'ghi', 'Gohir.D01G211200' => 'ghi', 'Gohir.D07G139200' => 'ghi', 'Gohir.D07G152100' => 'ghi', 'Gohir.D08G192600' => 'ghi', 'Gohir.D09G189200' => 'ghi', 'Gohir.D10G212000' => 'ghi', 'Gohir.D11G085200' => 'ghi', 'Gohir.D11G346400' => 'ghi', 'Gohir.D12G104800' => 'ghi', 'Gorai.001G151300' => 'gra', 'Gorai.001G174100' => 'gra', 'Gorai.002G257000' => 'gra', 'Gorai.004G202600' => 'gra', 'Gorai.007G090900' => 'gra', 'Gorai.007G376700' => 'gra', 'Gorai.008G114100' => 'gra', 'Gorai.011G237900' => 'gra', 'GSVIVG01005450001' => 'vvi', 'GSVIVG01016232001' => 'vvi', 'GSVIVG01026157001' => 'vvi', 'GSVIVG01027419001' => 'vvi', 'GSVIVG01027631001' => 'vvi', 'GSVIVG01034143001' => 'vvi', 'HanXRQChr03g0093921' => 'han', 'HanXRQChr04g0120001' => 'han', 'HanXRQChr04g0122561' => 'han', 'HanXRQChr09g0246851' => 'han', 'HanXRQChr10g0293311' => 'han', 'HanXRQChr13g0425231' => 'han', 'HanXRQChr16g0532571' => 'han', 'Haze_09050' => 'cav', 'Haze_15715' => 'cav', 'Haze_15716' => 'cav', 'Haze_16803' => 'cav', 'Haze_16850' => 'cav', 'Hma1.2p1_0301F.1_g118655' => 'hma', 'Hma1.2p1_0309F.1_g120590' => 'hma', 'Hma1.2p1_0936F.1_g238900' => 'hma', 'Hma1.2p1_3552F.1_g336740' => 'hma', 'HPP92_003520' => 'vpl', 'HPP92_006628' => 'vpl', 'HPP92_006645' => 'vpl', 'HPP92_014669' => 'vpl', 'HPP92_015077' => 'vpl', 'Hund16742' => 'sun', 'Hund17022' => 'sun', 'Lalb_Chr02g0152131' => 'lal', 'Lalb_Chr05g0225371' => 'lal', 'Lalb_Chr07g0189841' => 'lal', 'Lalb_Chr07g0192961' => 'lal', 'Lalb_Chr12g0208221' => 'lal', 'Lalb_Chr13g0291211' => 'lal', 'Lalb_Chr13g0291781' => 'lal', 'Lalb_Chr18g0044651' => 'lal', 'Lalb_Chr21g0313731' => 'lal', 'Lj1g0022533' => 'lja', 'Lj2A18T50' => 'lonja', 'Lj2A92G93' => 'lonja', 'Lj3A965T73' => 'lonja', 'Lj3g0000673' => 'lja', 'Lj3g0002666' => 'lja', 'Lj4g0016985' => 'lja', 'Lj5g0003625' => 'lja', 'Lj7A529G36' => 'lonja', 'Lj9A569T49' => 'lonja', 'Lj9A604T63' => 'lonja', 'Lsat_1_v5_gn_3_132060' => 'lsa', 'Lsat_1_v5_gn_4_68941' => 'lsa', 'Lsat_1_v5_gn_5_95580' => 'lsa', 'Lsat_1_v5_gn_7_161' => 'lsa', 'Lsat_1_v5_gn_7_7041' => 'lsa', 'Lsat_1_v5_gn_9_33481' => 'lsa', 'Lsat_1_v5_gn_9_68260' => 'lsa', 'Manes.01G073100' => 'mes', 'Manes.01G266300' => 'mes', 'Manes.02G033300' => 'mes', 'Manes.05G017900' => 'mes', 'Manes.05G046100' => 'mes', 'Manes.08G080900' => 'mes', 'Manes.10G049400' => 'mes', 'Mapoly0009s0186' => 'mpo', 'Mapoly0036s0118' => 'mpo', 'Mapoly0101s0046' => 'mpo', 'MBI04_g30218_MAGBIO' => 'mbi', 'MBI04_g35564_MAGBIO' => 'mbi', 'MBI12_g34011_MAGBIO' => 'mbi', 'MBI14_g04655_MAGBIO' => 'mbi', 'MCO07G653' => 'mco', 'MCO10G173' => 'mco', 'MD01G1087100' => 'mdo', 'MD01G1104200' => 'mdo', 'MD02G1205100' => 'mdo', 'MD04G1079200' => 'mdo', 'MD04G1131400' => 'mdo', 'MD07G1121600' => 'mdo', 'MD07G1157300' => 'mdo', 'MD07G1171000' => 'mdo', 'MD12G1144500' => 'mdo', 'Medtr1g094610' => 'mtr', 'Medtr4g021795' => 'mtr', 'Medtr4g023760' => 'mtr', 'Medtr7g118050' => 'mtr', 'MELO3C005582.2' => 'cme', 'MELO3C005989.2' => 'cme', 'MELO3C006192.2' => 'cme', 'MELO3C009248.2' => 'cme', 'MELO3C019817.2' => 'cme', 'Migut.B01625' => 'egut', 'Migut.B01915' => 'egut', 'Migut.F01721' => 'egut', 'Migut.J00314' => 'egut', 'MSTRG.20742' => 'ama', 'MSTRG.8134' => 'ama', 'Nitab4.5_0000096g0010' => 'nta', 'Nitab4.5_0000202g0030' => 'nta', 'Nitab4.5_0000216g0370' => 'nta', 'Nitab4.5_0000457g0230' => 'nta', 'Nitab4.5_0001702g0170' => 'nta', 'Nitab4.5_0003607g0010' => 'nta', 'Nitab4.5_0004917g0020' => 'nta', 'Nitab4.5_0007059g0010' => 'nta', 'Nitab4.5_0007184g0010' => 'nta', 'Nitab4.5_0007346g0020' => 'nta', 'Nn1g00410' => 'nnu', 'Nn1g01252' => 'nnu', 'Nn2g11168' => 'nnu', 'Nn2g13403' => 'nnu', 'Nn2g13760' => 'nnu', 'Nn4g26380' => 'nnu', 'Oeu000806.2' => 'oeu', 'Oeu005788.1' => 'oeu', 'Oeu006900.3' => 'oeu', 'Oeu007797.1' => 'oeu', 'Oeu011932.1' => 'oeu', 'Oeu022739.1' => 'oeu', 'Oeu037918.1' => 'oeu', 'Oeu055490.2' => 'oeu', 'Os01g0844400' => 'osa', 'Os02g0819100' => 'osa', 'Os03g0804300' => 'osa', 'Os05g0458000' => 'osa', 'Os07g0467800' => 'osa', 'Os12g0602200' => 'osa', 'Peaxi162Scf00013g03444' => 'pax', 'Peaxi162Scf00094g01120' => 'pax', 'Peaxi162Scf00191g01211' => 'pax', 'Peaxi162Scf00238g01110' => 'pax', 'Peaxi162Scf00330g00719' => 'pax', 'Peaxi162Scf00627g00018' => 'pax', 'PGR031G2686' => 'pgr', 'PGR042G0809' => 'pgr', 'PGR142G0193' => 'pgr', 'PGSC0003DMG400011066' => 'stu', 'PGSC0003DMG400012041' => 'stu', 'PGSC0003DMG400013678' => 'stu', 'PGSC0003DMG400023477' => 'stu', 'PGSC0003DMG400025956' => 'stu', 'PGSC0003DMG401019151' => 'stu', 'Phvul.006G116400' => 'pvu', 'Phvul.007G097300' => 'pvu', 'Phvul.010G015000' => 'pvu', 'Phvul.010G083900' => 'pvu', 'Potri.001G117100' => 'ptr', 'Potri.002G147300' => 'ptr', 'Potri.003G115600' => 'ptr', 'Potri.006G087400' => 'ptr', 'Potri.010G226100' => 'ptr', 'Potri.014G069200' => 'ptr', 'Potri.014G104000' => 'ptr', 'Potri.016G100200' => 'ptr', 'Pp3c10_20450' => 'ppa', 'Pp3c1_42400' => 'ppa', 'Pp3c3_24390' => 'ppa', 'Pp3c3_2860' => 'ppa', 'PRCOL_00003193' => 'pco', 'Prupe.2G144500' => 'ppe', 'Prupe.2G195700' => 'ppe', 'Prupe.2G209800' => 'ppe', 'Prupe.5G080000' => 'ppe', 'Prupe.6G257900' => 'ppe', 'Psat3g001160' => 'psa', 'Psat6g181880' => 'psa', 'Psat7g233720' => 'psa', 'PSO063G7587' => 'pso', 'PSO339G2145' => 'pso', 'PSO339G3369' => 'pso', 'PSO478G2747' => 'pso', 'PSO513G0140' => 'pso', 'PSO782G1614' => 'pso', 'PSO782G4889' => 'pso', 'PSO782G5485' => 'pso', 'PSO801G0241' => 'pso', 'QL07p048854' => 'qlo', 'QL08p046745' => 'qlo', 'QL08p052606' => 'qlo', 'QL08p053414' => 'qlo', 'QL08p054868' => 'qlo', 'RcHm_v2.0_Chr1g0350251' => 'rch', 'RcHm_v2.0_Chr1g0360851' => 'rch', 'RcHm_v2.0_Chr1g0362791' => 'rch', 'RcHm_v2.0_Chr3g0466281' => 'rch', 'RcHm_v2.0_Chr7g0201481' => 'rch', 'Rhsim01G0148600' => 'rsi', 'Rhsim05G0194400' => 'rsi', 'Rhsim07G0000700' => 'rsi', 'Rhsim07G0000800' => 'rsi', 'Rhsim07G0027900' => 'rsi', 'Rhsim09G0149500' => 'rsi', 'RhsimUnG0186900' => 'rsi', 'Sabra01G0089900' => 'sbr', 'Sabra02G0114700' => 'sbr', 'Sabra02G0116300' => 'sbr', 'Sabra03G0080100' => 'sbr', 'Sabra08G0024300' => 'sbr', 'Sabra10G0174300' => 'sbr', 'Sabra14G0048900' => 'sbr', 'Sabra14G0076500' => 'sbr', 'SalBow5G2513' => 'sbo', 'Sc01g0002300' => 'sci', 'Sc01g0004450' => 'sci', 'Sc06g0001680' => 'sci', 'Sc23g0003580' => 'sci', 'Sed0000913' => 'sed', 'Sed0001655' => 'sed', 'Sed0007745' => 'sed', 'Sed0010951' => 'sed', 'Sed0017599' => 'sed', 'Sed0021405' => 'sed', 'Sed0022810' => 'sed', 'SEGI_07099' => 'sgi', 'SEGI_11931' => 'sgi', 'SEGI_13187' => 'sgi', 'SEGI_29958' => 'sgi', 'SEGI_36351' => 'sgi', 'SGA_v2.0_scaffold126G33770' => 'sas', 'SGA_v2.0_scaffold153G37003' => 'sas', 'SGA_v2.0_scaffold2G01359' => 'sas', 'SGA_v2.0_scaffold5G03064' => 'sas', 'SGA_v2.0_scaffold95G28903' => 'sas', 'SHI12701' => 'shi', 'SHI26410' => 'shi', 'SHI38997' => 'shi', 'SHI53759' => 'shi', 'SHI53886' => 'shi', 'SHI54714' => 'shi', 'SMO011G0041' => 'smo', 'SMO146G0251' => 'smo', 'SMO160G0004' => 'smo', 'SMO174G0057' => 'smo', 'SMO244G0089' => 'smo', 'SMO296G0011' => 'smo', 'Solyc01g091280.3' => 'sly', 'Solyc05g047610.3' => 'sly', 'Solyc05g047640.3' => 'sly', 'Solyc05g055630.3' => 'sly', 'Solyc10g018160.2' => 'sly', 'Solyc10g084820.2' => 'sly', 'Solyc10g086565.2' => 'sly', 'Sopen01g037030' => 'spe', 'Sopen05g027920' => 'spe', 'Sopen05g034070' => 'spe', 'Sopen10g007260' => 'spe', 'Sopen10g034260' => 'spe', 'Sopen10g035950' => 'spe', 'Sp3g07710' => 'spa', 'Sp4g27420' => 'spa', 'Sp5g02450' => 'spa', 'Sp6g01280' => 'spa', 'Sp6g38480' => 'spa', 'Sp7g20780' => 'spa', 'TAR374G1413' => 'tar', 'TAR623G1777' => 'tar', 'TAR629G2370' => 'tar', 'TAR633G1759' => 'tar', 'TAR636G3387' => 'tar', 'THA.LOC104802447' => 'tha', 'THA.LOC104813916' => 'tha', 'THA.LOC104816423' => 'tha', 'THA.LOC104817246' => 'tha', 'THA.LOC104825895' => 'tha', 'Thecc.01G335200' => 'tca', 'Thecc.01G377400' => 'tca', 'Thecc.03G262200' => 'tca', 'Thecc.05G036800' => 'tca', 'Thecc.10G080500' => 'tca', 'Thecc.10G080800' => 'tca', 'Thhalv10001560m.g' => 'esa', 'Thhalv10006120m.g' => 'esa', 'Thhalv10014375m.g' => 'esa', 'Thhalv10021264m.g' => 'esa', 'Thhalv10028856m.g' => 'esa', 'TPR.G1914' => 'tpr', 'TPR.G4757' => 'tpr', 'TPR.G5595' => 'tpr', 'TWI14G0952' => 'twi', 'TWI14G1307' => 'twi', 'TWI38G2143' => 'twi', 'TWI59G0826' => 'twi', 'TWI77G0527' => 'twi', 'TWI81G0150' => 'twi', 'unitig_21.g21018' => 'ugi', 'unitig_26.g9725' => 'ugi', 'unitig_744.g24653' => 'ugi', 'unitig_749.g13778' => 'ugi', 'unitig_899.g15035' => 'ugi', 'vmacro04296' => 'vma', 'vmacro04852' => 'vma', 'vmacro13404' => 'vma', 'vmacro20169' => 'vma', 'vmacro21014' => 'vma', 'VMungo0331G0237' => 'vmu', 'VMungo0331G0706' => 'vmu', 'VMungo0331G1361' => 'vmu', 'VMungo0331G1489' => 'vmu', 'VMungo0540G1037' => 'vmu', 'VMungo0720G2487' => 'vmu', 'VMungo0720G2721' => 'vmu', 'Zm00001eb086860' => 'zma', 'Zm00001eb104760' => 'zma', 'Zm00001eb148220' => 'zma', 'Zm00001eb259030' => 'zma', 'Zm00001eb289590' => 'zma', 'Zm00001eb420150' => 'zma' ) $gf_id = 'HOM05D000968' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000968' ) $data_identifier = 'HOM05D000968' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 19, 'bol' => (int) 9, 'bra' => (int) 12, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 5, 'ccan' => (int) 7, 'cde' => (int) 5, 'cfa' => (int) 8, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 4, 'dca' => (int) 5, 'din' => (int) 5, 'dzi' => (int) 12, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 25, 'fve' => (int) 5, 'gma' => (int) 9, 'ghi' => (int) 18, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 7, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 5, 'sun' => (int) 2, 'lal' => (int) 9, 'lja' => (int) 5, 'lonja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 9, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 2, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 3, 'stu' => (int) 6, 'pvu' => (int) 4, 'ptr' => (int) 8, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 3, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 1, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 5, 'sas' => (int) 5, 'shi' => (int) 6, 'smo' => (int) 6, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 3, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420150' $species_info = array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ) $local_species = 'acertr' $disabled = '' $selected = ''include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0;
$disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":"";
$selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":"";
$num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0;
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000968', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p31690' => 'bna', 'A03p36040' => 'bna', 'A03p53730' => 'bna', 'A04p01410' => 'bna', 'A05p05420' => 'bna', 'A05p39630' => 'bna', 'A05p39640' => 'bna', 'A09p00970' => 'bna', 'A09p53060' => 'bna', 'A10p31890' => 'bna', 'Aa31LG10G15040' => 'aar', 'Aa31LG1G21090' => 'aar', 'Aa31LG1G26900' => 'aar', 'Aa31LG3G1820' => 'aar', 'Aa31LG5G1100' => 'aar', 'Aa31LG6G4740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2265' => 'aag', 'Actinidia07998' => 'ach', 'Actinidia11266' => 'ach', 'Actinidia12682' => 'ach', 'Actinidia26479' => 'ach', 'Actinidia31406' => 'ach', 'Actinidia32437' => 'ach', 'Actinidia38862' => 'ach', 'Ah.05g174230' => 'amhyb', 'Ah.05g179070' => 'amhyb', 'Ah.05g179090' => 'amhyb', 'Ah.12g059950' => 'amhyb', 'AL3G20480' => 'aly', 'AL4G44520' => 'aly', 'AL5G43110' => 'aly', 'AL6G13890' => 'aly', 'AL6G52620' => 'aly', 'AL7G30830' => 'aly', 'Aqoxy1G00899' => 'aox', 'Aqoxy5G04333' => 'aox', 'Aqoxy7G00641' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3IZ0NN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4EF6AW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W9P8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79GA3M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C43NQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFCU6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G95YVJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCHK29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LU1UG8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX91RN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGB4B1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8DA0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9H7JI' => 'arhy', 'AT3G09320' => 'ath', 'AT3G60800' => 'ath', 'AT4G00840' => 'ath', 'AT4G22750' => 'ath', 'AT5G04270' => 'ath', 'ATR0090G003' => 'atr', 'ATR0559G349' => 'atr', 'ATR0680G261' => 'atr', 'ATR0810G048' => 'atr', 'Atru.chr12.831' => 'acertr', 'Atru.chr5.303' => 'acertr', 'Atru.chr5.748' => 'acertr', 'Atru.chr8.1999' => 'acertr', 'Atru.chr9.1436' => 'acertr', 'AUR62004211' => 'cqu', 'AUR62004548' => 'cqu', 'AUR62013637' => 'cqu', 'AUR62022662' => 'cqu', 'AUR62025777' => 'cqu', 'AUR62042386' => 'cqu', 'BcaB01g02310' => 'bca', 'BcaB01g06062' => 'bca', 'BcaB02g08975' => 'bca', 'BcaB02g08980' => 'bca', 'BcaC01g04228' => 'bca', 'BcaC01g06830' => 'bca', 'BcaC02g10186' => 'bca', 'BcaC02g12214' => 'bca', 'BcaC04g24101' => 'bca', 'BcaC05g29520' => 'bca', 'BcaC05g29661' => 'bca', 'BcaC06g32130' => 'bca', 'BcaC06g32131' => 'bca', 'BcaC07g40601' => 'bca', 'BcaC07g42641' => 'bca', 'BcaNung01038' => 'bca', 'BcaNung01676' => 'bca', 'BcaNung02480' => 'bca', 'BcaNung07376' => 'bca', 'BolC3t16146H' => 'bol', 'BolC3t16637H' => 'bol', 'BolC4t22257H' => 'bol', 'BolC4t24728H' => 'bol', 'BolC5t34517H' => 'bol', 'BolC7t45703H' => 'bol', 'BolC8t51166H' => 'bol', 'BolC9t53038H' => 'bol', 'BolC9t60000H' => 'bol', 'BraA01t01345Z' => 'bra', 'BraA01t01346Z' => 'bra', 'BraA01t01348Z' => 'bra', 'BraA03t12347Z' => 'bra', 'BraA03t12775Z' => 'bra', 'BraA03t14439Z' => 'bra', 'BraA04t15860Z' => 'bra', 'BraA05t19511Z' => 'bra', 'BraA05t22746Z' => 'bra', 'BraA09t35767Z' => 'bra', 'BraA09t40732Z' => 'bra', 'BraA10t45233Z' => 'bra', 'C03p38720' => 'bna', 'C03p43680' => 'bna', 'C04p06350' => 'bna', 'C04p31800' => 'bna', 'C05p58680' => 'bna', 'C07p52110' => 'bna', 'C08p35760' => 'bna', 'C09p01050' => 'bna', 'C09p72600' => 'bna', 'CAN.G106.2' => 'can', 'CAN.G1482.1' => 'can', 'CAN.G324.12' => 'can', 'CAN.G388.20' => 'can', 'CAN.G412.7' => 'can', 'CAN.G694.32' => 'can', 'CAN.G92.12' => 'can', 'CANSAT11G2353' => 'cansat', 'CANSAT21G1398' => 'cansat', 'CANSAT56G2456' => 'cansat', 'CANSAT56G3031' => 'cansat', 'CANSAT56G4539' => 'cansat', 'CARHR083680' => 'chi', 'CARHR171190' => 'chi', 'CARHR209010' => 'chi', 'CARHR229680' => 'chi', 'CARHR249490' => 'chi', 'Carub.0003s0844' => 'cru', 'Carub.0005s2755' => 'cru', 'Carub.0006s0322' => 'cru', 'Carub.0006s3586' => 'cru', 'Carub.0007s1855' => 'cru', 'Ca_07808_v3' => 'car', 'Ca_09535_v3' => 'car', 'Ca_10548_v3' => 'car', 'Ca_19913_v3' => 'car', 'Ca_19916_v3' => 'car', 'Ca_19975_v3' => 'car', 'CBR_g22876' => 'cbr', 'CBR_g22879' => 'cbr', 'CBR_g38491' => 'cbr', 'CBR_g54185' => 'cbr', 'CBR_g54190' => 'cbr', 'Cc02_g11020' => 'ccan', 'Cc02_g23920' => 'ccan', 'Cc02_g39860' => 'ccan', 'Cc02_g39870' => 'ccan', 'Cc03_g06760' => 'ccan', 'Cc06_g02450' => 'ccan', 'Cc09_g09450' => 'ccan', 'CDE02G1959' => 'cde', 'CDE04G0600' => 'cde', 'CDE07G1996' => 'cde', 'CDE07G2078' => 'cde', 'CDE11G0611' => 'cde', 'Cfa001683' => 'cfa', 'Cfa001734' => 'cfa', 'Cfa001737' => 'cfa', 'Cfa003751' => 'cfa', 'Cfa012019' => 'cfa', 'Cfa017353' => 'cfa', 'Cfa017732' => 'cfa', 'Cfa022464' => 'cfa', 'Ciclev10012400m.g' => 'ccl', 'Ciclev10021242m.g' => 'ccl', 'Ciclev10021302m.g' => 'ccl', 'Ciclev10021463m.g' => 'ccl', 'Ciclev10032359m.g' => 'ccl', 'CiPaw.01G081000' => 'cil', 'CiPaw.01G262500' => 'cil', 'CiPaw.01G269800' => 'cil', 'CiPaw.02G168400' => 'cil', 'CiPaw.05G119500' => 'cil', 'CiPaw.11G147300' => 'cil', 'ClCG01G003630' => 'cla', 'ClCG05G000510' => 'cla', 'ClCG05G002300' => 'cla', 'ClCG08G007650' => 'cla', 'ClCG10G021250' => 'cla', 'COL.COLO4_06218' => 'col', 'COL.COLO4_12538' => 'col', 'COL.COLO4_14775' => 'col', 'COL.COLO4_23875' => 'col', 'Cpa.g.sc141.16' => 'cpa', 'Cpa.g.sc169.16' => 'cpa', 'Cpa.g.sc244.4' => 'cpa', 'Cpa.g.sc244.5' => 'cpa', 'Cpa.g.sc29.87' => 'cpa', 'Cpa.g.sc53.115' => 'cpa', 'Cre03.g207502' => 'cre', 'Cre06.g277000' => 'cre', 'Cre09.g394050' => 'cre', 'CsaV3_3G007680' => 'csa', 'CsaV3_3G009710' => 'csa', 'CsaV3_3G034790' => 'csa', 'CsaV3_5G003750' => 'csa', 'CsaV3_6G036620' => 'csa', 'CSS0002288' => 'camsi', 'CSS0011250' => 'camsi', 'CSS0021619' => 'camsi', 'CSS0046701' => 'camsi', 'DCAR_006420' => 'dca', 'DCAR_006865' => 'dca', 'DCAR_008558' => 'dca', 'DCAR_028754' => 'dca', 'DCAR_028755' => 'dca', 'Dinv31218' => 'din', 'Dinv32371' => 'din', 'Dinv34250' => 'din', 'Dinv37156' => 'din', 'Dinv43704' => 'din', 'Duzib093G1811' => 'dzi', 'Duzib106G1622' => 'dzi', 'Duzib114G0504' => 'dzi', 'Duzib128G0338' => 'dzi', 'Duzib128G1577' => 'dzi', 'Duzib133G0104' => 'dzi', 'Duzib133G1080' => 'dzi', 'Duzib138G0324' => 'dzi', 'Duzib138G0394' => 'dzi', 'Duzib205G0122' => 'dzi', 'Duzib268G1020' => 'dzi', 'Duzib268G1359' => 'dzi', 'ECA232G3929' => 'eca', 'ECA236G2210' => 'eca', 'ECA236G2287' => 'eca', 'ECA240G4568' => 'eca', 'ECA247G0894' => 'eca', 'EL10Ac1g00200' => 'bvu', 'EL10Ac1g00886' => 'bvu', 'EL10As1g23091' => 'bvu', 'EL10As1g23092' => 'bvu', 'Eucgr.A01284' => 'egr', 'Eucgr.A01285' => 'egr', 'Eucgr.D02456' => 'egr', 'Eucgr.E00018' => 'egr', 'Eucgr.E01439' => 'egr', 'Eucgr.G02859' => 'egr', 'FAN01G0168' => 'fan', 'FAN01G0453' => 'fan', 'FAN01G2761' => 'fan', 'FAN02G1239' => 'fan', 'FAN03G0645' => 'fan', 'FAN03G2707' => 'fan', 'FAN03G2978' => 'fan', 'FAN04G0227' => 'fan', 'FAN06G0091' => 'fan', 'FAN06G1418' => 'fan', 'FAN06G1512' => 'fan', 'FAN06G1986' => 'fan', 'FAN06G2905' => 'fan', 'FAN06G4325' => 'fan', 'FAN08G0033' => 'fan', 'FAN09G0642' => 'fan', 'FAN10G1763' => 'fan', 'FAN10G2026' => 'fan', 'FAN10G2513' => 'fan', 'FAN10G3402' => 'fan', 'FAN10G3564' => 'fan', 'FAN10G3987' => 'fan', 'FAN13G1490' => 'fan', 'FAN14G5857' => 'fan', 'FAN18G1188' => 'fan', 'FvH4_5g00750' => 'fve', 'FvH4_6g13410' => 'fve', 'FvH4_7g11740' => 'fve', 'FvH4_7g17410' => 'fve', 'FvH4_7g18860' => 'fve', 'Glyma.01G099100' => 'gma', 'Glyma.01G142300' => 'gma', 'Glyma.03G025500' => 'gma', 'Glyma.03G069700' => 'gma', 'Glyma.03G260000' => 'gma', 'Glyma.09G269800' => 'gma', 'Glyma.10G208700' => 'gma', 'Glyma.18G220400' => 'gma', 'Glyma.20G182000' => 'gma', 'Gohir.A01G221726' => 'ghi', 'Gohir.A07G134600' => 'ghi', 'Gohir.A07G146000' => 'ghi', 'Gohir.A08G173900' => 'ghi', 'Gohir.A09G194900' => 'ghi', 'Gohir.A10G204100' => 'ghi', 'Gohir.A11G080600' => 'ghi', 'Gohir.A11G327500' => 'ghi', 'Gohir.A12G101800' => 'ghi', 'Gohir.D01G211200' => 'ghi', 'Gohir.D07G139200' => 'ghi', 'Gohir.D07G152100' => 'ghi', 'Gohir.D08G192600' => 'ghi', 'Gohir.D09G189200' => 'ghi', 'Gohir.D10G212000' => 'ghi', 'Gohir.D11G085200' => 'ghi', 'Gohir.D11G346400' => 'ghi', 'Gohir.D12G104800' => 'ghi', 'Gorai.001G151300' => 'gra', 'Gorai.001G174100' => 'gra', 'Gorai.002G257000' => 'gra', 'Gorai.004G202600' => 'gra', 'Gorai.007G090900' => 'gra', 'Gorai.007G376700' => 'gra', 'Gorai.008G114100' => 'gra', 'Gorai.011G237900' => 'gra', 'GSVIVG01005450001' => 'vvi', 'GSVIVG01016232001' => 'vvi', 'GSVIVG01026157001' => 'vvi', 'GSVIVG01027419001' => 'vvi', 'GSVIVG01027631001' => 'vvi', 'GSVIVG01034143001' => 'vvi', 'HanXRQChr03g0093921' => 'han', 'HanXRQChr04g0120001' => 'han', 'HanXRQChr04g0122561' => 'han', 'HanXRQChr09g0246851' => 'han', 'HanXRQChr10g0293311' => 'han', 'HanXRQChr13g0425231' => 'han', 'HanXRQChr16g0532571' => 'han', 'Haze_09050' => 'cav', 'Haze_15715' => 'cav', 'Haze_15716' => 'cav', 'Haze_16803' => 'cav', 'Haze_16850' => 'cav', 'Hma1.2p1_0301F.1_g118655' => 'hma', 'Hma1.2p1_0309F.1_g120590' => 'hma', 'Hma1.2p1_0936F.1_g238900' => 'hma', 'Hma1.2p1_3552F.1_g336740' => 'hma', 'HPP92_003520' => 'vpl', 'HPP92_006628' => 'vpl', 'HPP92_006645' => 'vpl', 'HPP92_014669' => 'vpl', 'HPP92_015077' => 'vpl', 'Hund16742' => 'sun', 'Hund17022' => 'sun', 'Lalb_Chr02g0152131' => 'lal', 'Lalb_Chr05g0225371' => 'lal', 'Lalb_Chr07g0189841' => 'lal', 'Lalb_Chr07g0192961' => 'lal', 'Lalb_Chr12g0208221' => 'lal', 'Lalb_Chr13g0291211' => 'lal', 'Lalb_Chr13g0291781' => 'lal', 'Lalb_Chr18g0044651' => 'lal', 'Lalb_Chr21g0313731' => 'lal', 'Lj1g0022533' => 'lja', 'Lj2A18T50' => 'lonja', 'Lj2A92G93' => 'lonja', 'Lj3A965T73' => 'lonja', 'Lj3g0000673' => 'lja', 'Lj3g0002666' => 'lja', 'Lj4g0016985' => 'lja', 'Lj5g0003625' => 'lja', 'Lj7A529G36' => 'lonja', 'Lj9A569T49' => 'lonja', 'Lj9A604T63' => 'lonja', 'Lsat_1_v5_gn_3_132060' => 'lsa', 'Lsat_1_v5_gn_4_68941' => 'lsa', 'Lsat_1_v5_gn_5_95580' => 'lsa', 'Lsat_1_v5_gn_7_161' => 'lsa', 'Lsat_1_v5_gn_7_7041' => 'lsa', 'Lsat_1_v5_gn_9_33481' => 'lsa', 'Lsat_1_v5_gn_9_68260' => 'lsa', 'Manes.01G073100' => 'mes', 'Manes.01G266300' => 'mes', 'Manes.02G033300' => 'mes', 'Manes.05G017900' => 'mes', 'Manes.05G046100' => 'mes', 'Manes.08G080900' => 'mes', 'Manes.10G049400' => 'mes', 'Mapoly0009s0186' => 'mpo', 'Mapoly0036s0118' => 'mpo', 'Mapoly0101s0046' => 'mpo', 'MBI04_g30218_MAGBIO' => 'mbi', 'MBI04_g35564_MAGBIO' => 'mbi', 'MBI12_g34011_MAGBIO' => 'mbi', 'MBI14_g04655_MAGBIO' => 'mbi', 'MCO07G653' => 'mco', 'MCO10G173' => 'mco', 'MD01G1087100' => 'mdo', 'MD01G1104200' => 'mdo', 'MD02G1205100' => 'mdo', 'MD04G1079200' => 'mdo', 'MD04G1131400' => 'mdo', 'MD07G1121600' => 'mdo', 'MD07G1157300' => 'mdo', 'MD07G1171000' => 'mdo', 'MD12G1144500' => 'mdo', 'Medtr1g094610' => 'mtr', 'Medtr4g021795' => 'mtr', 'Medtr4g023760' => 'mtr', 'Medtr7g118050' => 'mtr', 'MELO3C005582.2' => 'cme', 'MELO3C005989.2' => 'cme', 'MELO3C006192.2' => 'cme', 'MELO3C009248.2' => 'cme', 'MELO3C019817.2' => 'cme', 'Migut.B01625' => 'egut', 'Migut.B01915' => 'egut', 'Migut.F01721' => 'egut', 'Migut.J00314' => 'egut', 'MSTRG.20742' => 'ama', 'MSTRG.8134' => 'ama', 'Nitab4.5_0000096g0010' => 'nta', 'Nitab4.5_0000202g0030' => 'nta', 'Nitab4.5_0000216g0370' => 'nta', 'Nitab4.5_0000457g0230' => 'nta', 'Nitab4.5_0001702g0170' => 'nta', 'Nitab4.5_0003607g0010' => 'nta', 'Nitab4.5_0004917g0020' => 'nta', 'Nitab4.5_0007059g0010' => 'nta', 'Nitab4.5_0007184g0010' => 'nta', 'Nitab4.5_0007346g0020' => 'nta', 'Nn1g00410' => 'nnu', 'Nn1g01252' => 'nnu', 'Nn2g11168' => 'nnu', 'Nn2g13403' => 'nnu', 'Nn2g13760' => 'nnu', 'Nn4g26380' => 'nnu', 'Oeu000806.2' => 'oeu', 'Oeu005788.1' => 'oeu', 'Oeu006900.3' => 'oeu', 'Oeu007797.1' => 'oeu', 'Oeu011932.1' => 'oeu', 'Oeu022739.1' => 'oeu', 'Oeu037918.1' => 'oeu', 'Oeu055490.2' => 'oeu', 'Os01g0844400' => 'osa', 'Os02g0819100' => 'osa', 'Os03g0804300' => 'osa', 'Os05g0458000' => 'osa', 'Os07g0467800' => 'osa', 'Os12g0602200' => 'osa', 'Peaxi162Scf00013g03444' => 'pax', 'Peaxi162Scf00094g01120' => 'pax', 'Peaxi162Scf00191g01211' => 'pax', 'Peaxi162Scf00238g01110' => 'pax', 'Peaxi162Scf00330g00719' => 'pax', 'Peaxi162Scf00627g00018' => 'pax', 'PGR031G2686' => 'pgr', 'PGR042G0809' => 'pgr', 'PGR142G0193' => 'pgr', 'PGSC0003DMG400011066' => 'stu', 'PGSC0003DMG400012041' => 'stu', 'PGSC0003DMG400013678' => 'stu', 'PGSC0003DMG400023477' => 'stu', 'PGSC0003DMG400025956' => 'stu', 'PGSC0003DMG401019151' => 'stu', 'Phvul.006G116400' => 'pvu', 'Phvul.007G097300' => 'pvu', 'Phvul.010G015000' => 'pvu', 'Phvul.010G083900' => 'pvu', 'Potri.001G117100' => 'ptr', 'Potri.002G147300' => 'ptr', 'Potri.003G115600' => 'ptr', 'Potri.006G087400' => 'ptr', 'Potri.010G226100' => 'ptr', 'Potri.014G069200' => 'ptr', 'Potri.014G104000' => 'ptr', 'Potri.016G100200' => 'ptr', 'Pp3c10_20450' => 'ppa', 'Pp3c1_42400' => 'ppa', 'Pp3c3_24390' => 'ppa', 'Pp3c3_2860' => 'ppa', 'PRCOL_00003193' => 'pco', 'Prupe.2G144500' => 'ppe', 'Prupe.2G195700' => 'ppe', 'Prupe.2G209800' => 'ppe', 'Prupe.5G080000' => 'ppe', 'Prupe.6G257900' => 'ppe', 'Psat3g001160' => 'psa', 'Psat6g181880' => 'psa', 'Psat7g233720' => 'psa', 'PSO063G7587' => 'pso', 'PSO339G2145' => 'pso', 'PSO339G3369' => 'pso', 'PSO478G2747' => 'pso', 'PSO513G0140' => 'pso', 'PSO782G1614' => 'pso', 'PSO782G4889' => 'pso', 'PSO782G5485' => 'pso', 'PSO801G0241' => 'pso', 'QL07p048854' => 'qlo', 'QL08p046745' => 'qlo', 'QL08p052606' => 'qlo', 'QL08p053414' => 'qlo', 'QL08p054868' => 'qlo', 'RcHm_v2.0_Chr1g0350251' => 'rch', 'RcHm_v2.0_Chr1g0360851' => 'rch', 'RcHm_v2.0_Chr1g0362791' => 'rch', 'RcHm_v2.0_Chr3g0466281' => 'rch', 'RcHm_v2.0_Chr7g0201481' => 'rch', 'Rhsim01G0148600' => 'rsi', 'Rhsim05G0194400' => 'rsi', 'Rhsim07G0000700' => 'rsi', 'Rhsim07G0000800' => 'rsi', 'Rhsim07G0027900' => 'rsi', 'Rhsim09G0149500' => 'rsi', 'RhsimUnG0186900' => 'rsi', 'Sabra01G0089900' => 'sbr', 'Sabra02G0114700' => 'sbr', 'Sabra02G0116300' => 'sbr', 'Sabra03G0080100' => 'sbr', 'Sabra08G0024300' => 'sbr', 'Sabra10G0174300' => 'sbr', 'Sabra14G0048900' => 'sbr', 'Sabra14G0076500' => 'sbr', 'SalBow5G2513' => 'sbo', 'Sc01g0002300' => 'sci', 'Sc01g0004450' => 'sci', 'Sc06g0001680' => 'sci', 'Sc23g0003580' => 'sci', 'Sed0000913' => 'sed', 'Sed0001655' => 'sed', 'Sed0007745' => 'sed', 'Sed0010951' => 'sed', 'Sed0017599' => 'sed', 'Sed0021405' => 'sed', 'Sed0022810' => 'sed', 'SEGI_07099' => 'sgi', 'SEGI_11931' => 'sgi', 'SEGI_13187' => 'sgi', 'SEGI_29958' => 'sgi', 'SEGI_36351' => 'sgi', 'SGA_v2.0_scaffold126G33770' => 'sas', 'SGA_v2.0_scaffold153G37003' => 'sas', 'SGA_v2.0_scaffold2G01359' => 'sas', 'SGA_v2.0_scaffold5G03064' => 'sas', 'SGA_v2.0_scaffold95G28903' => 'sas', 'SHI12701' => 'shi', 'SHI26410' => 'shi', 'SHI38997' => 'shi', 'SHI53759' => 'shi', 'SHI53886' => 'shi', 'SHI54714' => 'shi', 'SMO011G0041' => 'smo', 'SMO146G0251' => 'smo', 'SMO160G0004' => 'smo', 'SMO174G0057' => 'smo', 'SMO244G0089' => 'smo', 'SMO296G0011' => 'smo', 'Solyc01g091280.3' => 'sly', 'Solyc05g047610.3' => 'sly', 'Solyc05g047640.3' => 'sly', 'Solyc05g055630.3' => 'sly', 'Solyc10g018160.2' => 'sly', 'Solyc10g084820.2' => 'sly', 'Solyc10g086565.2' => 'sly', 'Sopen01g037030' => 'spe', 'Sopen05g027920' => 'spe', 'Sopen05g034070' => 'spe', 'Sopen10g007260' => 'spe', 'Sopen10g034260' => 'spe', 'Sopen10g035950' => 'spe', 'Sp3g07710' => 'spa', 'Sp4g27420' => 'spa', 'Sp5g02450' => 'spa', 'Sp6g01280' => 'spa', 'Sp6g38480' => 'spa', 'Sp7g20780' => 'spa', 'TAR374G1413' => 'tar', 'TAR623G1777' => 'tar', 'TAR629G2370' => 'tar', 'TAR633G1759' => 'tar', 'TAR636G3387' => 'tar', 'THA.LOC104802447' => 'tha', 'THA.LOC104813916' => 'tha', 'THA.LOC104816423' => 'tha', 'THA.LOC104817246' => 'tha', 'THA.LOC104825895' => 'tha', 'Thecc.01G335200' => 'tca', 'Thecc.01G377400' => 'tca', 'Thecc.03G262200' => 'tca', 'Thecc.05G036800' => 'tca', 'Thecc.10G080500' => 'tca', 'Thecc.10G080800' => 'tca', 'Thhalv10001560m.g' => 'esa', 'Thhalv10006120m.g' => 'esa', 'Thhalv10014375m.g' => 'esa', 'Thhalv10021264m.g' => 'esa', 'Thhalv10028856m.g' => 'esa', 'TPR.G1914' => 'tpr', 'TPR.G4757' => 'tpr', 'TPR.G5595' => 'tpr', 'TWI14G0952' => 'twi', 'TWI14G1307' => 'twi', 'TWI38G2143' => 'twi', 'TWI59G0826' => 'twi', 'TWI77G0527' => 'twi', 'TWI81G0150' => 'twi', 'unitig_21.g21018' => 'ugi', 'unitig_26.g9725' => 'ugi', 'unitig_744.g24653' => 'ugi', 'unitig_749.g13778' => 'ugi', 'unitig_899.g15035' => 'ugi', 'vmacro04296' => 'vma', 'vmacro04852' => 'vma', 'vmacro13404' => 'vma', 'vmacro20169' => 'vma', 'vmacro21014' => 'vma', 'VMungo0331G0237' => 'vmu', 'VMungo0331G0706' => 'vmu', 'VMungo0331G1361' => 'vmu', 'VMungo0331G1489' => 'vmu', 'VMungo0540G1037' => 'vmu', 'VMungo0720G2487' => 'vmu', 'VMungo0720G2721' => 'vmu', 'Zm00001eb086860' => 'zma', 'Zm00001eb104760' => 'zma', 'Zm00001eb148220' => 'zma', 'Zm00001eb259030' => 'zma', 'Zm00001eb289590' => 'zma', 'Zm00001eb420150' => 'zma' ), 'gf_id' => 'HOM05D000968', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000968' ), 'data_identifier' => 'HOM05D000968', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000968', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p31690' => 'bna', 'A03p36040' => 'bna', 'A03p53730' => 'bna', 'A04p01410' => 'bna', 'A05p05420' => 'bna', 'A05p39630' => 'bna', 'A05p39640' => 'bna', 'A09p00970' => 'bna', 'A09p53060' => 'bna', 'A10p31890' => 'bna', 'Aa31LG10G15040' => 'aar', 'Aa31LG1G21090' => 'aar', 'Aa31LG1G26900' => 'aar', 'Aa31LG3G1820' => 'aar', 'Aa31LG5G1100' => 'aar', 'Aa31LG6G4740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2265' => 'aag', 'Actinidia07998' => 'ach', 'Actinidia11266' => 'ach', 'Actinidia12682' => 'ach', 'Actinidia26479' => 'ach', 'Actinidia31406' => 'ach', 'Actinidia32437' => 'ach', 'Actinidia38862' => 'ach', 'Ah.05g174230' => 'amhyb', 'Ah.05g179070' => 'amhyb', 'Ah.05g179090' => 'amhyb', 'Ah.12g059950' => 'amhyb', 'AL3G20480' => 'aly', 'AL4G44520' => 'aly', 'AL5G43110' => 'aly', 'AL6G13890' => 'aly', 'AL6G52620' => 'aly', 'AL7G30830' => 'aly', 'Aqoxy1G00899' => 'aox', 'Aqoxy5G04333' => 'aox', 'Aqoxy7G00641' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3IZ0NN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4EF6AW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W9P8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79GA3M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C43NQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFCU6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G95YVJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCHK29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LU1UG8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX91RN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGB4B1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8DA0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9H7JI' => 'arhy', 'AT3G09320' => 'ath', 'AT3G60800' => 'ath', 'AT4G00840' => 'ath', 'AT4G22750' => 'ath', 'AT5G04270' => 'ath', 'ATR0090G003' => 'atr', 'ATR0559G349' => 'atr', 'ATR0680G261' => 'atr', 'ATR0810G048' => 'atr', 'Atru.chr12.831' => 'acertr', 'Atru.chr5.303' => 'acertr', 'Atru.chr5.748' => 'acertr', 'Atru.chr8.1999' => 'acertr', 'Atru.chr9.1436' => 'acertr', 'AUR62004211' => 'cqu', 'AUR62004548' => 'cqu', 'AUR62013637' => 'cqu', 'AUR62022662' => 'cqu', 'AUR62025777' => 'cqu', 'AUR62042386' => 'cqu', 'BcaB01g02310' => 'bca', 'BcaB01g06062' => 'bca', 'BcaB02g08975' => 'bca', 'BcaB02g08980' => 'bca', 'BcaC01g04228' => 'bca', 'BcaC01g06830' => 'bca', 'BcaC02g10186' => 'bca', 'BcaC02g12214' => 'bca', 'BcaC04g24101' => 'bca', 'BcaC05g29520' => 'bca', 'BcaC05g29661' => 'bca', 'BcaC06g32130' => 'bca', 'BcaC06g32131' => 'bca', 'BcaC07g40601' => 'bca', 'BcaC07g42641' => 'bca', 'BcaNung01038' => 'bca', 'BcaNung01676' => 'bca', 'BcaNung02480' => 'bca', 'BcaNung07376' => 'bca', 'BolC3t16146H' => 'bol', 'BolC3t16637H' => 'bol', 'BolC4t22257H' => 'bol', 'BolC4t24728H' => 'bol', 'BolC5t34517H' => 'bol', 'BolC7t45703H' => 'bol', 'BolC8t51166H' => 'bol', 'BolC9t53038H' => 'bol', 'BolC9t60000H' => 'bol', 'BraA01t01345Z' => 'bra', 'BraA01t01346Z' => 'bra', 'BraA01t01348Z' => 'bra', 'BraA03t12347Z' => 'bra', 'BraA03t12775Z' => 'bra', 'BraA03t14439Z' => 'bra', 'BraA04t15860Z' => 'bra', 'BraA05t19511Z' => 'bra', 'BraA05t22746Z' => 'bra', 'BraA09t35767Z' => 'bra', 'BraA09t40732Z' => 'bra', 'BraA10t45233Z' => 'bra', 'C03p38720' => 'bna', 'C03p43680' => 'bna', 'C04p06350' => 'bna', 'C04p31800' => 'bna', 'C05p58680' => 'bna', 'C07p52110' => 'bna', 'C08p35760' => 'bna', 'C09p01050' => 'bna', 'C09p72600' => 'bna', 'CAN.G106.2' => 'can', 'CAN.G1482.1' => 'can', 'CAN.G324.12' => 'can', 'CAN.G388.20' => 'can', 'CAN.G412.7' => 'can', 'CAN.G694.32' => 'can', 'CAN.G92.12' => 'can', 'CANSAT11G2353' => 'cansat', 'CANSAT21G1398' => 'cansat', 'CANSAT56G2456' => 'cansat', 'CANSAT56G3031' => 'cansat', 'CANSAT56G4539' => 'cansat', 'CARHR083680' => 'chi', 'CARHR171190' => 'chi', 'CARHR209010' => 'chi', 'CARHR229680' => 'chi', 'CARHR249490' => 'chi', 'Carub.0003s0844' => 'cru', 'Carub.0005s2755' => 'cru', 'Carub.0006s0322' => 'cru', 'Carub.0006s3586' => 'cru', 'Carub.0007s1855' => 'cru', 'Ca_07808_v3' => 'car', 'Ca_09535_v3' => 'car', 'Ca_10548_v3' => 'car', 'Ca_19913_v3' => 'car', 'Ca_19916_v3' => 'car', 'Ca_19975_v3' => 'car', 'CBR_g22876' => 'cbr', 'CBR_g22879' => 'cbr', 'CBR_g38491' => 'cbr', 'CBR_g54185' => 'cbr', 'CBR_g54190' => 'cbr', 'Cc02_g11020' => 'ccan', 'Cc02_g23920' => 'ccan', 'Cc02_g39860' => 'ccan', 'Cc02_g39870' => 'ccan', 'Cc03_g06760' => 'ccan', 'Cc06_g02450' => 'ccan', 'Cc09_g09450' => 'ccan', 'CDE02G1959' => 'cde', 'CDE04G0600' => 'cde', 'CDE07G1996' => 'cde', 'CDE07G2078' => 'cde', 'CDE11G0611' => 'cde', 'Cfa001683' => 'cfa', 'Cfa001734' => 'cfa', 'Cfa001737' => 'cfa', 'Cfa003751' => 'cfa', 'Cfa012019' => 'cfa', 'Cfa017353' => 'cfa', 'Cfa017732' => 'cfa', 'Cfa022464' => 'cfa', 'Ciclev10012400m.g' => 'ccl', 'Ciclev10021242m.g' => 'ccl', 'Ciclev10021302m.g' => 'ccl', 'Ciclev10021463m.g' => 'ccl', 'Ciclev10032359m.g' => 'ccl', 'CiPaw.01G081000' => 'cil', 'CiPaw.01G262500' => 'cil', 'CiPaw.01G269800' => 'cil', 'CiPaw.02G168400' => 'cil', 'CiPaw.05G119500' => 'cil', 'CiPaw.11G147300' => 'cil', 'ClCG01G003630' => 'cla', 'ClCG05G000510' => 'cla', 'ClCG05G002300' => 'cla', 'ClCG08G007650' => 'cla', 'ClCG10G021250' => 'cla', 'COL.COLO4_06218' => 'col', 'COL.COLO4_12538' => 'col', 'COL.COLO4_14775' => 'col', 'COL.COLO4_23875' => 'col', 'Cpa.g.sc141.16' => 'cpa', 'Cpa.g.sc169.16' => 'cpa', 'Cpa.g.sc244.4' => 'cpa', 'Cpa.g.sc244.5' => 'cpa', 'Cpa.g.sc29.87' => 'cpa', 'Cpa.g.sc53.115' => 'cpa', 'Cre03.g207502' => 'cre', 'Cre06.g277000' => 'cre', 'Cre09.g394050' => 'cre', 'CsaV3_3G007680' => 'csa', 'CsaV3_3G009710' => 'csa', 'CsaV3_3G034790' => 'csa', 'CsaV3_5G003750' => 'csa', 'CsaV3_6G036620' => 'csa', 'CSS0002288' => 'camsi', 'CSS0011250' => 'camsi', 'CSS0021619' => 'camsi', 'CSS0046701' => 'camsi', 'DCAR_006420' => 'dca', 'DCAR_006865' => 'dca', 'DCAR_008558' => 'dca', 'DCAR_028754' => 'dca', 'DCAR_028755' => 'dca', 'Dinv31218' => 'din', 'Dinv32371' => 'din', 'Dinv34250' => 'din', 'Dinv37156' => 'din', 'Dinv43704' => 'din', 'Duzib093G1811' => 'dzi', 'Duzib106G1622' => 'dzi', 'Duzib114G0504' => 'dzi', 'Duzib128G0338' => 'dzi', 'Duzib128G1577' => 'dzi', 'Duzib133G0104' => 'dzi', 'Duzib133G1080' => 'dzi', 'Duzib138G0324' => 'dzi', 'Duzib138G0394' => 'dzi', 'Duzib205G0122' => 'dzi', 'Duzib268G1020' => 'dzi', 'Duzib268G1359' => 'dzi', 'ECA232G3929' => 'eca', 'ECA236G2210' => 'eca', 'ECA236G2287' => 'eca', 'ECA240G4568' => 'eca', 'ECA247G0894' => 'eca', 'EL10Ac1g00200' => 'bvu', 'EL10Ac1g00886' => 'bvu', 'EL10As1g23091' => 'bvu', 'EL10As1g23092' => 'bvu', 'Eucgr.A01284' => 'egr', 'Eucgr.A01285' => 'egr', 'Eucgr.D02456' => 'egr', 'Eucgr.E00018' => 'egr', 'Eucgr.E01439' => 'egr', 'Eucgr.G02859' => 'egr', 'FAN01G0168' => 'fan', 'FAN01G0453' => 'fan', 'FAN01G2761' => 'fan', 'FAN02G1239' => 'fan', 'FAN03G0645' => 'fan', 'FAN03G2707' => 'fan', 'FAN03G2978' => 'fan', 'FAN04G0227' => 'fan', 'FAN06G0091' => 'fan', 'FAN06G1418' => 'fan', 'FAN06G1512' => 'fan', 'FAN06G1986' => 'fan', 'FAN06G2905' => 'fan', 'FAN06G4325' => 'fan', 'FAN08G0033' => 'fan', 'FAN09G0642' => 'fan', 'FAN10G1763' => 'fan', 'FAN10G2026' => 'fan', 'FAN10G2513' => 'fan', 'FAN10G3402' => 'fan', 'FAN10G3564' => 'fan', 'FAN10G3987' => 'fan', 'FAN13G1490' => 'fan', 'FAN14G5857' => 'fan', 'FAN18G1188' => 'fan', 'FvH4_5g00750' => 'fve', 'FvH4_6g13410' => 'fve', 'FvH4_7g11740' => 'fve', 'FvH4_7g17410' => 'fve', 'FvH4_7g18860' => 'fve', 'Glyma.01G099100' => 'gma', 'Glyma.01G142300' => 'gma', 'Glyma.03G025500' => 'gma', 'Glyma.03G069700' => 'gma', 'Glyma.03G260000' => 'gma', 'Glyma.09G269800' => 'gma', 'Glyma.10G208700' => 'gma', 'Glyma.18G220400' => 'gma', 'Glyma.20G182000' => 'gma', 'Gohir.A01G221726' => 'ghi', 'Gohir.A07G134600' => 'ghi', 'Gohir.A07G146000' => 'ghi', 'Gohir.A08G173900' => 'ghi', 'Gohir.A09G194900' => 'ghi', 'Gohir.A10G204100' => 'ghi', 'Gohir.A11G080600' => 'ghi', 'Gohir.A11G327500' => 'ghi', 'Gohir.A12G101800' => 'ghi', 'Gohir.D01G211200' => 'ghi', 'Gohir.D07G139200' => 'ghi', 'Gohir.D07G152100' => 'ghi', 'Gohir.D08G192600' => 'ghi', 'Gohir.D09G189200' => 'ghi', 'Gohir.D10G212000' => 'ghi', 'Gohir.D11G085200' => 'ghi', 'Gohir.D11G346400' => 'ghi', 'Gohir.D12G104800' => 'ghi', 'Gorai.001G151300' => 'gra', 'Gorai.001G174100' => 'gra', 'Gorai.002G257000' => 'gra', 'Gorai.004G202600' => 'gra', 'Gorai.007G090900' => 'gra', 'Gorai.007G376700' => 'gra', 'Gorai.008G114100' => 'gra', 'Gorai.011G237900' => 'gra', 'GSVIVG01005450001' => 'vvi', 'GSVIVG01016232001' => 'vvi', 'GSVIVG01026157001' => 'vvi', 'GSVIVG01027419001' => 'vvi', 'GSVIVG01027631001' => 'vvi', 'GSVIVG01034143001' => 'vvi', 'HanXRQChr03g0093921' => 'han', 'HanXRQChr04g0120001' => 'han', 'HanXRQChr04g0122561' => 'han', 'HanXRQChr09g0246851' => 'han', 'HanXRQChr10g0293311' => 'han', 'HanXRQChr13g0425231' => 'han', 'HanXRQChr16g0532571' => 'han', 'Haze_09050' => 'cav', 'Haze_15715' => 'cav', 'Haze_15716' => 'cav', 'Haze_16803' => 'cav', 'Haze_16850' => 'cav', 'Hma1.2p1_0301F.1_g118655' => 'hma', 'Hma1.2p1_0309F.1_g120590' => 'hma', 'Hma1.2p1_0936F.1_g238900' => 'hma', 'Hma1.2p1_3552F.1_g336740' => 'hma', 'HPP92_003520' => 'vpl', 'HPP92_006628' => 'vpl', 'HPP92_006645' => 'vpl', 'HPP92_014669' => 'vpl', 'HPP92_015077' => 'vpl', 'Hund16742' => 'sun', 'Hund17022' => 'sun', 'Lalb_Chr02g0152131' => 'lal', 'Lalb_Chr05g0225371' => 'lal', 'Lalb_Chr07g0189841' => 'lal', 'Lalb_Chr07g0192961' => 'lal', 'Lalb_Chr12g0208221' => 'lal', 'Lalb_Chr13g0291211' => 'lal', 'Lalb_Chr13g0291781' => 'lal', 'Lalb_Chr18g0044651' => 'lal', 'Lalb_Chr21g0313731' => 'lal', 'Lj1g0022533' => 'lja', 'Lj2A18T50' => 'lonja', 'Lj2A92G93' => 'lonja', 'Lj3A965T73' => 'lonja', 'Lj3g0000673' => 'lja', 'Lj3g0002666' => 'lja', 'Lj4g0016985' => 'lja', 'Lj5g0003625' => 'lja', 'Lj7A529G36' => 'lonja', 'Lj9A569T49' => 'lonja', 'Lj9A604T63' => 'lonja', 'Lsat_1_v5_gn_3_132060' => 'lsa', 'Lsat_1_v5_gn_4_68941' => 'lsa', 'Lsat_1_v5_gn_5_95580' => 'lsa', 'Lsat_1_v5_gn_7_161' => 'lsa', 'Lsat_1_v5_gn_7_7041' => 'lsa', 'Lsat_1_v5_gn_9_33481' => 'lsa', 'Lsat_1_v5_gn_9_68260' => 'lsa', 'Manes.01G073100' => 'mes', 'Manes.01G266300' => 'mes', 'Manes.02G033300' => 'mes', 'Manes.05G017900' => 'mes', 'Manes.05G046100' => 'mes', 'Manes.08G080900' => 'mes', 'Manes.10G049400' => 'mes', 'Mapoly0009s0186' => 'mpo', 'Mapoly0036s0118' => 'mpo', 'Mapoly0101s0046' => 'mpo', 'MBI04_g30218_MAGBIO' => 'mbi', 'MBI04_g35564_MAGBIO' => 'mbi', 'MBI12_g34011_MAGBIO' => 'mbi', 'MBI14_g04655_MAGBIO' => 'mbi', 'MCO07G653' => 'mco', 'MCO10G173' => 'mco', 'MD01G1087100' => 'mdo', 'MD01G1104200' => 'mdo', 'MD02G1205100' => 'mdo', 'MD04G1079200' => 'mdo', 'MD04G1131400' => 'mdo', 'MD07G1121600' => 'mdo', 'MD07G1157300' => 'mdo', 'MD07G1171000' => 'mdo', 'MD12G1144500' => 'mdo', 'Medtr1g094610' => 'mtr', 'Medtr4g021795' => 'mtr', 'Medtr4g023760' => 'mtr', 'Medtr7g118050' => 'mtr', 'MELO3C005582.2' => 'cme', 'MELO3C005989.2' => 'cme', 'MELO3C006192.2' => 'cme', 'MELO3C009248.2' => 'cme', 'MELO3C019817.2' => 'cme', 'Migut.B01625' => 'egut', 'Migut.B01915' => 'egut', 'Migut.F01721' => 'egut', 'Migut.J00314' => 'egut', 'MSTRG.20742' => 'ama', 'MSTRG.8134' => 'ama', 'Nitab4.5_0000096g0010' => 'nta', 'Nitab4.5_0000202g0030' => 'nta', 'Nitab4.5_0000216g0370' => 'nta', 'Nitab4.5_0000457g0230' => 'nta', 'Nitab4.5_0001702g0170' => 'nta', 'Nitab4.5_0003607g0010' => 'nta', 'Nitab4.5_0004917g0020' => 'nta', 'Nitab4.5_0007059g0010' => 'nta', 'Nitab4.5_0007184g0010' => 'nta', 'Nitab4.5_0007346g0020' => 'nta', 'Nn1g00410' => 'nnu', 'Nn1g01252' => 'nnu', 'Nn2g11168' => 'nnu', 'Nn2g13403' => 'nnu', 'Nn2g13760' => 'nnu', 'Nn4g26380' => 'nnu', 'Oeu000806.2' => 'oeu', 'Oeu005788.1' => 'oeu', 'Oeu006900.3' => 'oeu', 'Oeu007797.1' => 'oeu', 'Oeu011932.1' => 'oeu', 'Oeu022739.1' => 'oeu', 'Oeu037918.1' => 'oeu', 'Oeu055490.2' => 'oeu', 'Os01g0844400' => 'osa', 'Os02g0819100' => 'osa', 'Os03g0804300' => 'osa', 'Os05g0458000' => 'osa', 'Os07g0467800' => 'osa', 'Os12g0602200' => 'osa', 'Peaxi162Scf00013g03444' => 'pax', 'Peaxi162Scf00094g01120' => 'pax', 'Peaxi162Scf00191g01211' => 'pax', 'Peaxi162Scf00238g01110' => 'pax', 'Peaxi162Scf00330g00719' => 'pax', 'Peaxi162Scf00627g00018' => 'pax', 'PGR031G2686' => 'pgr', 'PGR042G0809' => 'pgr', 'PGR142G0193' => 'pgr', 'PGSC0003DMG400011066' => 'stu', 'PGSC0003DMG400012041' => 'stu', 'PGSC0003DMG400013678' => 'stu', 'PGSC0003DMG400023477' => 'stu', 'PGSC0003DMG400025956' => 'stu', 'PGSC0003DMG401019151' => 'stu', 'Phvul.006G116400' => 'pvu', 'Phvul.007G097300' => 'pvu', 'Phvul.010G015000' => 'pvu', 'Phvul.010G083900' => 'pvu', 'Potri.001G117100' => 'ptr', 'Potri.002G147300' => 'ptr', 'Potri.003G115600' => 'ptr', 'Potri.006G087400' => 'ptr', 'Potri.010G226100' => 'ptr', 'Potri.014G069200' => 'ptr', 'Potri.014G104000' => 'ptr', 'Potri.016G100200' => 'ptr', 'Pp3c10_20450' => 'ppa', 'Pp3c1_42400' => 'ppa', 'Pp3c3_24390' => 'ppa', 'Pp3c3_2860' => 'ppa', 'PRCOL_00003193' => 'pco', 'Prupe.2G144500' => 'ppe', 'Prupe.2G195700' => 'ppe', 'Prupe.2G209800' => 'ppe', 'Prupe.5G080000' => 'ppe', 'Prupe.6G257900' => 'ppe', 'Psat3g001160' => 'psa', 'Psat6g181880' => 'psa', 'Psat7g233720' => 'psa', 'PSO063G7587' => 'pso', 'PSO339G2145' => 'pso', 'PSO339G3369' => 'pso', 'PSO478G2747' => 'pso', 'PSO513G0140' => 'pso', 'PSO782G1614' => 'pso', 'PSO782G4889' => 'pso', 'PSO782G5485' => 'pso', 'PSO801G0241' => 'pso', 'QL07p048854' => 'qlo', 'QL08p046745' => 'qlo', 'QL08p052606' => 'qlo', 'QL08p053414' => 'qlo', 'QL08p054868' => 'qlo', 'RcHm_v2.0_Chr1g0350251' => 'rch', 'RcHm_v2.0_Chr1g0360851' => 'rch', 'RcHm_v2.0_Chr1g0362791' => 'rch', 'RcHm_v2.0_Chr3g0466281' => 'rch', 'RcHm_v2.0_Chr7g0201481' => 'rch', 'Rhsim01G0148600' => 'rsi', 'Rhsim05G0194400' => 'rsi', 'Rhsim07G0000700' => 'rsi', 'Rhsim07G0000800' => 'rsi', 'Rhsim07G0027900' => 'rsi', 'Rhsim09G0149500' => 'rsi', 'RhsimUnG0186900' => 'rsi', 'Sabra01G0089900' => 'sbr', 'Sabra02G0114700' => 'sbr', 'Sabra02G0116300' => 'sbr', 'Sabra03G0080100' => 'sbr', 'Sabra08G0024300' => 'sbr', 'Sabra10G0174300' => 'sbr', 'Sabra14G0048900' => 'sbr', 'Sabra14G0076500' => 'sbr', 'SalBow5G2513' => 'sbo', 'Sc01g0002300' => 'sci', 'Sc01g0004450' => 'sci', 'Sc06g0001680' => 'sci', 'Sc23g0003580' => 'sci', 'Sed0000913' => 'sed', 'Sed0001655' => 'sed', 'Sed0007745' => 'sed', 'Sed0010951' => 'sed', 'Sed0017599' => 'sed', 'Sed0021405' => 'sed', 'Sed0022810' => 'sed', 'SEGI_07099' => 'sgi', 'SEGI_11931' => 'sgi', 'SEGI_13187' => 'sgi', 'SEGI_29958' => 'sgi', 'SEGI_36351' => 'sgi', 'SGA_v2.0_scaffold126G33770' => 'sas', 'SGA_v2.0_scaffold153G37003' => 'sas', 'SGA_v2.0_scaffold2G01359' => 'sas', 'SGA_v2.0_scaffold5G03064' => 'sas', 'SGA_v2.0_scaffold95G28903' => 'sas', 'SHI12701' => 'shi', 'SHI26410' => 'shi', 'SHI38997' => 'shi', 'SHI53759' => 'shi', 'SHI53886' => 'shi', 'SHI54714' => 'shi', 'SMO011G0041' => 'smo', 'SMO146G0251' => 'smo', 'SMO160G0004' => 'smo', 'SMO174G0057' => 'smo', 'SMO244G0089' => 'smo', 'SMO296G0011' => 'smo', 'Solyc01g091280.3' => 'sly', 'Solyc05g047610.3' => 'sly', 'Solyc05g047640.3' => 'sly', 'Solyc05g055630.3' => 'sly', 'Solyc10g018160.2' => 'sly', 'Solyc10g084820.2' => 'sly', 'Solyc10g086565.2' => 'sly', 'Sopen01g037030' => 'spe', 'Sopen05g027920' => 'spe', 'Sopen05g034070' => 'spe', 'Sopen10g007260' => 'spe', 'Sopen10g034260' => 'spe', 'Sopen10g035950' => 'spe', 'Sp3g07710' => 'spa', 'Sp4g27420' => 'spa', 'Sp5g02450' => 'spa', 'Sp6g01280' => 'spa', 'Sp6g38480' => 'spa', 'Sp7g20780' => 'spa', 'TAR374G1413' => 'tar', 'TAR623G1777' => 'tar', 'TAR629G2370' => 'tar', 'TAR633G1759' => 'tar', 'TAR636G3387' => 'tar', 'THA.LOC104802447' => 'tha', 'THA.LOC104813916' => 'tha', 'THA.LOC104816423' => 'tha', 'THA.LOC104817246' => 'tha', 'THA.LOC104825895' => 'tha', 'Thecc.01G335200' => 'tca', 'Thecc.01G377400' => 'tca', 'Thecc.03G262200' => 'tca', 'Thecc.05G036800' => 'tca', 'Thecc.10G080500' => 'tca', 'Thecc.10G080800' => 'tca', 'Thhalv10001560m.g' => 'esa', 'Thhalv10006120m.g' => 'esa', 'Thhalv10014375m.g' => 'esa', 'Thhalv10021264m.g' => 'esa', 'Thhalv10028856m.g' => 'esa', 'TPR.G1914' => 'tpr', 'TPR.G4757' => 'tpr', 'TPR.G5595' => 'tpr', 'TWI14G0952' => 'twi', 'TWI14G1307' => 'twi', 'TWI38G2143' => 'twi', 'TWI59G0826' => 'twi', 'TWI77G0527' => 'twi', 'TWI81G0150' => 'twi', 'unitig_21.g21018' => 'ugi', 'unitig_26.g9725' => 'ugi', 'unitig_744.g24653' => 'ugi', 'unitig_749.g13778' => 'ugi', 'unitig_899.g15035' => 'ugi', 'vmacro04296' => 'vma', 'vmacro04852' => 'vma', 'vmacro13404' => 'vma', 'vmacro20169' => 'vma', 'vmacro21014' => 'vma', 'VMungo0331G0237' => 'vmu', 'VMungo0331G0706' => 'vmu', 'VMungo0331G1361' => 'vmu', 'VMungo0331G1489' => 'vmu', 'VMungo0540G1037' => 'vmu', 'VMungo0720G2487' => 'vmu', 'VMungo0720G2721' => 'vmu', 'Zm00001eb086860' => 'zma', 'Zm00001eb104760' => 'zma', 'Zm00001eb148220' => 'zma', 'Zm00001eb259030' => 'zma', 'Zm00001eb289590' => 'zma', 'Zm00001eb420150' => 'zma' ) $gf_id = 'HOM05D000968' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000968' ) $data_identifier = 'HOM05D000968' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 19, 'bol' => (int) 9, 'bra' => (int) 12, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 5, 'ccan' => (int) 7, 'cde' => (int) 5, 'cfa' => (int) 8, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 4, 'dca' => (int) 5, 'din' => (int) 5, 'dzi' => (int) 12, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 25, 'fve' => (int) 5, 'gma' => (int) 9, 'ghi' => (int) 18, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 7, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 5, 'sun' => (int) 2, 'lal' => (int) 9, 'lja' => (int) 5, 'lonja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 9, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 2, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 3, 'stu' => (int) 6, 'pvu' => (int) 4, 'ptr' => (int) 8, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 3, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 1, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 5, 'sas' => (int) 5, 'shi' => (int) 6, 'smo' => (int) 6, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 3, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420150' $species_info = array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ) $local_species = 'acertr' $disabled = '' $selected = ''
include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000968', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p31690' => 'bna', 'A03p36040' => 'bna', 'A03p53730' => 'bna', 'A04p01410' => 'bna', 'A05p05420' => 'bna', 'A05p39630' => 'bna', 'A05p39640' => 'bna', 'A09p00970' => 'bna', 'A09p53060' => 'bna', 'A10p31890' => 'bna', 'Aa31LG10G15040' => 'aar', 'Aa31LG1G21090' => 'aar', 'Aa31LG1G26900' => 'aar', 'Aa31LG3G1820' => 'aar', 'Aa31LG5G1100' => 'aar', 'Aa31LG6G4740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2265' => 'aag', 'Actinidia07998' => 'ach', 'Actinidia11266' => 'ach', 'Actinidia12682' => 'ach', 'Actinidia26479' => 'ach', 'Actinidia31406' => 'ach', 'Actinidia32437' => 'ach', 'Actinidia38862' => 'ach', 'Ah.05g174230' => 'amhyb', 'Ah.05g179070' => 'amhyb', 'Ah.05g179090' => 'amhyb', 'Ah.12g059950' => 'amhyb', 'AL3G20480' => 'aly', 'AL4G44520' => 'aly', 'AL5G43110' => 'aly', 'AL6G13890' => 'aly', 'AL6G52620' => 'aly', 'AL7G30830' => 'aly', 'Aqoxy1G00899' => 'aox', 'Aqoxy5G04333' => 'aox', 'Aqoxy7G00641' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3IZ0NN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4EF6AW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W9P8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79GA3M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C43NQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFCU6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G95YVJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCHK29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LU1UG8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX91RN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGB4B1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8DA0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9H7JI' => 'arhy', 'AT3G09320' => 'ath', 'AT3G60800' => 'ath', 'AT4G00840' => 'ath', 'AT4G22750' => 'ath', 'AT5G04270' => 'ath', 'ATR0090G003' => 'atr', 'ATR0559G349' => 'atr', 'ATR0680G261' => 'atr', 'ATR0810G048' => 'atr', 'Atru.chr12.831' => 'acertr', 'Atru.chr5.303' => 'acertr', 'Atru.chr5.748' => 'acertr', 'Atru.chr8.1999' => 'acertr', 'Atru.chr9.1436' => 'acertr', 'AUR62004211' => 'cqu', 'AUR62004548' => 'cqu', 'AUR62013637' => 'cqu', 'AUR62022662' => 'cqu', 'AUR62025777' => 'cqu', 'AUR62042386' => 'cqu', 'BcaB01g02310' => 'bca', 'BcaB01g06062' => 'bca', 'BcaB02g08975' => 'bca', 'BcaB02g08980' => 'bca', 'BcaC01g04228' => 'bca', 'BcaC01g06830' => 'bca', 'BcaC02g10186' => 'bca', 'BcaC02g12214' => 'bca', 'BcaC04g24101' => 'bca', 'BcaC05g29520' => 'bca', 'BcaC05g29661' => 'bca', 'BcaC06g32130' => 'bca', 'BcaC06g32131' => 'bca', 'BcaC07g40601' => 'bca', 'BcaC07g42641' => 'bca', 'BcaNung01038' => 'bca', 'BcaNung01676' => 'bca', 'BcaNung02480' => 'bca', 'BcaNung07376' => 'bca', 'BolC3t16146H' => 'bol', 'BolC3t16637H' => 'bol', 'BolC4t22257H' => 'bol', 'BolC4t24728H' => 'bol', 'BolC5t34517H' => 'bol', 'BolC7t45703H' => 'bol', 'BolC8t51166H' => 'bol', 'BolC9t53038H' => 'bol', 'BolC9t60000H' => 'bol', 'BraA01t01345Z' => 'bra', 'BraA01t01346Z' => 'bra', 'BraA01t01348Z' => 'bra', 'BraA03t12347Z' => 'bra', 'BraA03t12775Z' => 'bra', 'BraA03t14439Z' => 'bra', 'BraA04t15860Z' => 'bra', 'BraA05t19511Z' => 'bra', 'BraA05t22746Z' => 'bra', 'BraA09t35767Z' => 'bra', 'BraA09t40732Z' => 'bra', 'BraA10t45233Z' => 'bra', 'C03p38720' => 'bna', 'C03p43680' => 'bna', 'C04p06350' => 'bna', 'C04p31800' => 'bna', 'C05p58680' => 'bna', 'C07p52110' => 'bna', 'C08p35760' => 'bna', 'C09p01050' => 'bna', 'C09p72600' => 'bna', 'CAN.G106.2' => 'can', 'CAN.G1482.1' => 'can', 'CAN.G324.12' => 'can', 'CAN.G388.20' => 'can', 'CAN.G412.7' => 'can', 'CAN.G694.32' => 'can', 'CAN.G92.12' => 'can', 'CANSAT11G2353' => 'cansat', 'CANSAT21G1398' => 'cansat', 'CANSAT56G2456' => 'cansat', 'CANSAT56G3031' => 'cansat', 'CANSAT56G4539' => 'cansat', 'CARHR083680' => 'chi', 'CARHR171190' => 'chi', 'CARHR209010' => 'chi', 'CARHR229680' => 'chi', 'CARHR249490' => 'chi', 'Carub.0003s0844' => 'cru', 'Carub.0005s2755' => 'cru', 'Carub.0006s0322' => 'cru', 'Carub.0006s3586' => 'cru', 'Carub.0007s1855' => 'cru', 'Ca_07808_v3' => 'car', 'Ca_09535_v3' => 'car', 'Ca_10548_v3' => 'car', 'Ca_19913_v3' => 'car', 'Ca_19916_v3' => 'car', 'Ca_19975_v3' => 'car', 'CBR_g22876' => 'cbr', 'CBR_g22879' => 'cbr', 'CBR_g38491' => 'cbr', 'CBR_g54185' => 'cbr', 'CBR_g54190' => 'cbr', 'Cc02_g11020' => 'ccan', 'Cc02_g23920' => 'ccan', 'Cc02_g39860' => 'ccan', 'Cc02_g39870' => 'ccan', 'Cc03_g06760' => 'ccan', 'Cc06_g02450' => 'ccan', 'Cc09_g09450' => 'ccan', 'CDE02G1959' => 'cde', 'CDE04G0600' => 'cde', 'CDE07G1996' => 'cde', 'CDE07G2078' => 'cde', 'CDE11G0611' => 'cde', 'Cfa001683' => 'cfa', 'Cfa001734' => 'cfa', 'Cfa001737' => 'cfa', 'Cfa003751' => 'cfa', 'Cfa012019' => 'cfa', 'Cfa017353' => 'cfa', 'Cfa017732' => 'cfa', 'Cfa022464' => 'cfa', 'Ciclev10012400m.g' => 'ccl', 'Ciclev10021242m.g' => 'ccl', 'Ciclev10021302m.g' => 'ccl', 'Ciclev10021463m.g' => 'ccl', 'Ciclev10032359m.g' => 'ccl', 'CiPaw.01G081000' => 'cil', 'CiPaw.01G262500' => 'cil', 'CiPaw.01G269800' => 'cil', 'CiPaw.02G168400' => 'cil', 'CiPaw.05G119500' => 'cil', 'CiPaw.11G147300' => 'cil', 'ClCG01G003630' => 'cla', 'ClCG05G000510' => 'cla', 'ClCG05G002300' => 'cla', 'ClCG08G007650' => 'cla', 'ClCG10G021250' => 'cla', 'COL.COLO4_06218' => 'col', 'COL.COLO4_12538' => 'col', 'COL.COLO4_14775' => 'col', 'COL.COLO4_23875' => 'col', 'Cpa.g.sc141.16' => 'cpa', 'Cpa.g.sc169.16' => 'cpa', 'Cpa.g.sc244.4' => 'cpa', 'Cpa.g.sc244.5' => 'cpa', 'Cpa.g.sc29.87' => 'cpa', 'Cpa.g.sc53.115' => 'cpa', 'Cre03.g207502' => 'cre', 'Cre06.g277000' => 'cre', 'Cre09.g394050' => 'cre', 'CsaV3_3G007680' => 'csa', 'CsaV3_3G009710' => 'csa', 'CsaV3_3G034790' => 'csa', 'CsaV3_5G003750' => 'csa', 'CsaV3_6G036620' => 'csa', 'CSS0002288' => 'camsi', 'CSS0011250' => 'camsi', 'CSS0021619' => 'camsi', 'CSS0046701' => 'camsi', 'DCAR_006420' => 'dca', 'DCAR_006865' => 'dca', 'DCAR_008558' => 'dca', 'DCAR_028754' => 'dca', 'DCAR_028755' => 'dca', 'Dinv31218' => 'din', 'Dinv32371' => 'din', 'Dinv34250' => 'din', 'Dinv37156' => 'din', 'Dinv43704' => 'din', 'Duzib093G1811' => 'dzi', 'Duzib106G1622' => 'dzi', 'Duzib114G0504' => 'dzi', 'Duzib128G0338' => 'dzi', 'Duzib128G1577' => 'dzi', 'Duzib133G0104' => 'dzi', 'Duzib133G1080' => 'dzi', 'Duzib138G0324' => 'dzi', 'Duzib138G0394' => 'dzi', 'Duzib205G0122' => 'dzi', 'Duzib268G1020' => 'dzi', 'Duzib268G1359' => 'dzi', 'ECA232G3929' => 'eca', 'ECA236G2210' => 'eca', 'ECA236G2287' => 'eca', 'ECA240G4568' => 'eca', 'ECA247G0894' => 'eca', 'EL10Ac1g00200' => 'bvu', 'EL10Ac1g00886' => 'bvu', 'EL10As1g23091' => 'bvu', 'EL10As1g23092' => 'bvu', 'Eucgr.A01284' => 'egr', 'Eucgr.A01285' => 'egr', 'Eucgr.D02456' => 'egr', 'Eucgr.E00018' => 'egr', 'Eucgr.E01439' => 'egr', 'Eucgr.G02859' => 'egr', 'FAN01G0168' => 'fan', 'FAN01G0453' => 'fan', 'FAN01G2761' => 'fan', 'FAN02G1239' => 'fan', 'FAN03G0645' => 'fan', 'FAN03G2707' => 'fan', 'FAN03G2978' => 'fan', 'FAN04G0227' => 'fan', 'FAN06G0091' => 'fan', 'FAN06G1418' => 'fan', 'FAN06G1512' => 'fan', 'FAN06G1986' => 'fan', 'FAN06G2905' => 'fan', 'FAN06G4325' => 'fan', 'FAN08G0033' => 'fan', 'FAN09G0642' => 'fan', 'FAN10G1763' => 'fan', 'FAN10G2026' => 'fan', 'FAN10G2513' => 'fan', 'FAN10G3402' => 'fan', 'FAN10G3564' => 'fan', 'FAN10G3987' => 'fan', 'FAN13G1490' => 'fan', 'FAN14G5857' => 'fan', 'FAN18G1188' => 'fan', 'FvH4_5g00750' => 'fve', 'FvH4_6g13410' => 'fve', 'FvH4_7g11740' => 'fve', 'FvH4_7g17410' => 'fve', 'FvH4_7g18860' => 'fve', 'Glyma.01G099100' => 'gma', 'Glyma.01G142300' => 'gma', 'Glyma.03G025500' => 'gma', 'Glyma.03G069700' => 'gma', 'Glyma.03G260000' => 'gma', 'Glyma.09G269800' => 'gma', 'Glyma.10G208700' => 'gma', 'Glyma.18G220400' => 'gma', 'Glyma.20G182000' => 'gma', 'Gohir.A01G221726' => 'ghi', 'Gohir.A07G134600' => 'ghi', 'Gohir.A07G146000' => 'ghi', 'Gohir.A08G173900' => 'ghi', 'Gohir.A09G194900' => 'ghi', 'Gohir.A10G204100' => 'ghi', 'Gohir.A11G080600' => 'ghi', 'Gohir.A11G327500' => 'ghi', 'Gohir.A12G101800' => 'ghi', 'Gohir.D01G211200' => 'ghi', 'Gohir.D07G139200' => 'ghi', 'Gohir.D07G152100' => 'ghi', 'Gohir.D08G192600' => 'ghi', 'Gohir.D09G189200' => 'ghi', 'Gohir.D10G212000' => 'ghi', 'Gohir.D11G085200' => 'ghi', 'Gohir.D11G346400' => 'ghi', 'Gohir.D12G104800' => 'ghi', 'Gorai.001G151300' => 'gra', 'Gorai.001G174100' => 'gra', 'Gorai.002G257000' => 'gra', 'Gorai.004G202600' => 'gra', 'Gorai.007G090900' => 'gra', 'Gorai.007G376700' => 'gra', 'Gorai.008G114100' => 'gra', 'Gorai.011G237900' => 'gra', 'GSVIVG01005450001' => 'vvi', 'GSVIVG01016232001' => 'vvi', 'GSVIVG01026157001' => 'vvi', 'GSVIVG01027419001' => 'vvi', 'GSVIVG01027631001' => 'vvi', 'GSVIVG01034143001' => 'vvi', 'HanXRQChr03g0093921' => 'han', 'HanXRQChr04g0120001' => 'han', 'HanXRQChr04g0122561' => 'han', 'HanXRQChr09g0246851' => 'han', 'HanXRQChr10g0293311' => 'han', 'HanXRQChr13g0425231' => 'han', 'HanXRQChr16g0532571' => 'han', 'Haze_09050' => 'cav', 'Haze_15715' => 'cav', 'Haze_15716' => 'cav', 'Haze_16803' => 'cav', 'Haze_16850' => 'cav', 'Hma1.2p1_0301F.1_g118655' => 'hma', 'Hma1.2p1_0309F.1_g120590' => 'hma', 'Hma1.2p1_0936F.1_g238900' => 'hma', 'Hma1.2p1_3552F.1_g336740' => 'hma', 'HPP92_003520' => 'vpl', 'HPP92_006628' => 'vpl', 'HPP92_006645' => 'vpl', 'HPP92_014669' => 'vpl', 'HPP92_015077' => 'vpl', 'Hund16742' => 'sun', 'Hund17022' => 'sun', 'Lalb_Chr02g0152131' => 'lal', 'Lalb_Chr05g0225371' => 'lal', 'Lalb_Chr07g0189841' => 'lal', 'Lalb_Chr07g0192961' => 'lal', 'Lalb_Chr12g0208221' => 'lal', 'Lalb_Chr13g0291211' => 'lal', 'Lalb_Chr13g0291781' => 'lal', 'Lalb_Chr18g0044651' => 'lal', 'Lalb_Chr21g0313731' => 'lal', 'Lj1g0022533' => 'lja', 'Lj2A18T50' => 'lonja', 'Lj2A92G93' => 'lonja', 'Lj3A965T73' => 'lonja', 'Lj3g0000673' => 'lja', 'Lj3g0002666' => 'lja', 'Lj4g0016985' => 'lja', 'Lj5g0003625' => 'lja', 'Lj7A529G36' => 'lonja', 'Lj9A569T49' => 'lonja', 'Lj9A604T63' => 'lonja', 'Lsat_1_v5_gn_3_132060' => 'lsa', 'Lsat_1_v5_gn_4_68941' => 'lsa', 'Lsat_1_v5_gn_5_95580' => 'lsa', 'Lsat_1_v5_gn_7_161' => 'lsa', 'Lsat_1_v5_gn_7_7041' => 'lsa', 'Lsat_1_v5_gn_9_33481' => 'lsa', 'Lsat_1_v5_gn_9_68260' => 'lsa', 'Manes.01G073100' => 'mes', 'Manes.01G266300' => 'mes', 'Manes.02G033300' => 'mes', 'Manes.05G017900' => 'mes', 'Manes.05G046100' => 'mes', 'Manes.08G080900' => 'mes', 'Manes.10G049400' => 'mes', 'Mapoly0009s0186' => 'mpo', 'Mapoly0036s0118' => 'mpo', 'Mapoly0101s0046' => 'mpo', 'MBI04_g30218_MAGBIO' => 'mbi', 'MBI04_g35564_MAGBIO' => 'mbi', 'MBI12_g34011_MAGBIO' => 'mbi', 'MBI14_g04655_MAGBIO' => 'mbi', 'MCO07G653' => 'mco', 'MCO10G173' => 'mco', 'MD01G1087100' => 'mdo', 'MD01G1104200' => 'mdo', 'MD02G1205100' => 'mdo', 'MD04G1079200' => 'mdo', 'MD04G1131400' => 'mdo', 'MD07G1121600' => 'mdo', 'MD07G1157300' => 'mdo', 'MD07G1171000' => 'mdo', 'MD12G1144500' => 'mdo', 'Medtr1g094610' => 'mtr', 'Medtr4g021795' => 'mtr', 'Medtr4g023760' => 'mtr', 'Medtr7g118050' => 'mtr', 'MELO3C005582.2' => 'cme', 'MELO3C005989.2' => 'cme', 'MELO3C006192.2' => 'cme', 'MELO3C009248.2' => 'cme', 'MELO3C019817.2' => 'cme', 'Migut.B01625' => 'egut', 'Migut.B01915' => 'egut', 'Migut.F01721' => 'egut', 'Migut.J00314' => 'egut', 'MSTRG.20742' => 'ama', 'MSTRG.8134' => 'ama', 'Nitab4.5_0000096g0010' => 'nta', 'Nitab4.5_0000202g0030' => 'nta', 'Nitab4.5_0000216g0370' => 'nta', 'Nitab4.5_0000457g0230' => 'nta', 'Nitab4.5_0001702g0170' => 'nta', 'Nitab4.5_0003607g0010' => 'nta', 'Nitab4.5_0004917g0020' => 'nta', 'Nitab4.5_0007059g0010' => 'nta', 'Nitab4.5_0007184g0010' => 'nta', 'Nitab4.5_0007346g0020' => 'nta', 'Nn1g00410' => 'nnu', 'Nn1g01252' => 'nnu', 'Nn2g11168' => 'nnu', 'Nn2g13403' => 'nnu', 'Nn2g13760' => 'nnu', 'Nn4g26380' => 'nnu', 'Oeu000806.2' => 'oeu', 'Oeu005788.1' => 'oeu', 'Oeu006900.3' => 'oeu', 'Oeu007797.1' => 'oeu', 'Oeu011932.1' => 'oeu', 'Oeu022739.1' => 'oeu', 'Oeu037918.1' => 'oeu', 'Oeu055490.2' => 'oeu', 'Os01g0844400' => 'osa', 'Os02g0819100' => 'osa', 'Os03g0804300' => 'osa', 'Os05g0458000' => 'osa', 'Os07g0467800' => 'osa', 'Os12g0602200' => 'osa', 'Peaxi162Scf00013g03444' => 'pax', 'Peaxi162Scf00094g01120' => 'pax', 'Peaxi162Scf00191g01211' => 'pax', 'Peaxi162Scf00238g01110' => 'pax', 'Peaxi162Scf00330g00719' => 'pax', 'Peaxi162Scf00627g00018' => 'pax', 'PGR031G2686' => 'pgr', 'PGR042G0809' => 'pgr', 'PGR142G0193' => 'pgr', 'PGSC0003DMG400011066' => 'stu', 'PGSC0003DMG400012041' => 'stu', 'PGSC0003DMG400013678' => 'stu', 'PGSC0003DMG400023477' => 'stu', 'PGSC0003DMG400025956' => 'stu', 'PGSC0003DMG401019151' => 'stu', 'Phvul.006G116400' => 'pvu', 'Phvul.007G097300' => 'pvu', 'Phvul.010G015000' => 'pvu', 'Phvul.010G083900' => 'pvu', 'Potri.001G117100' => 'ptr', 'Potri.002G147300' => 'ptr', 'Potri.003G115600' => 'ptr', 'Potri.006G087400' => 'ptr', 'Potri.010G226100' => 'ptr', 'Potri.014G069200' => 'ptr', 'Potri.014G104000' => 'ptr', 'Potri.016G100200' => 'ptr', 'Pp3c10_20450' => 'ppa', 'Pp3c1_42400' => 'ppa', 'Pp3c3_24390' => 'ppa', 'Pp3c3_2860' => 'ppa', 'PRCOL_00003193' => 'pco', 'Prupe.2G144500' => 'ppe', 'Prupe.2G195700' => 'ppe', 'Prupe.2G209800' => 'ppe', 'Prupe.5G080000' => 'ppe', 'Prupe.6G257900' => 'ppe', 'Psat3g001160' => 'psa', 'Psat6g181880' => 'psa', 'Psat7g233720' => 'psa', 'PSO063G7587' => 'pso', 'PSO339G2145' => 'pso', 'PSO339G3369' => 'pso', 'PSO478G2747' => 'pso', 'PSO513G0140' => 'pso', 'PSO782G1614' => 'pso', 'PSO782G4889' => 'pso', 'PSO782G5485' => 'pso', 'PSO801G0241' => 'pso', 'QL07p048854' => 'qlo', 'QL08p046745' => 'qlo', 'QL08p052606' => 'qlo', 'QL08p053414' => 'qlo', 'QL08p054868' => 'qlo', 'RcHm_v2.0_Chr1g0350251' => 'rch', 'RcHm_v2.0_Chr1g0360851' => 'rch', 'RcHm_v2.0_Chr1g0362791' => 'rch', 'RcHm_v2.0_Chr3g0466281' => 'rch', 'RcHm_v2.0_Chr7g0201481' => 'rch', 'Rhsim01G0148600' => 'rsi', 'Rhsim05G0194400' => 'rsi', 'Rhsim07G0000700' => 'rsi', 'Rhsim07G0000800' => 'rsi', 'Rhsim07G0027900' => 'rsi', 'Rhsim09G0149500' => 'rsi', 'RhsimUnG0186900' => 'rsi', 'Sabra01G0089900' => 'sbr', 'Sabra02G0114700' => 'sbr', 'Sabra02G0116300' => 'sbr', 'Sabra03G0080100' => 'sbr', 'Sabra08G0024300' => 'sbr', 'Sabra10G0174300' => 'sbr', 'Sabra14G0048900' => 'sbr', 'Sabra14G0076500' => 'sbr', 'SalBow5G2513' => 'sbo', 'Sc01g0002300' => 'sci', 'Sc01g0004450' => 'sci', 'Sc06g0001680' => 'sci', 'Sc23g0003580' => 'sci', 'Sed0000913' => 'sed', 'Sed0001655' => 'sed', 'Sed0007745' => 'sed', 'Sed0010951' => 'sed', 'Sed0017599' => 'sed', 'Sed0021405' => 'sed', 'Sed0022810' => 'sed', 'SEGI_07099' => 'sgi', 'SEGI_11931' => 'sgi', 'SEGI_13187' => 'sgi', 'SEGI_29958' => 'sgi', 'SEGI_36351' => 'sgi', 'SGA_v2.0_scaffold126G33770' => 'sas', 'SGA_v2.0_scaffold153G37003' => 'sas', 'SGA_v2.0_scaffold2G01359' => 'sas', 'SGA_v2.0_scaffold5G03064' => 'sas', 'SGA_v2.0_scaffold95G28903' => 'sas', 'SHI12701' => 'shi', 'SHI26410' => 'shi', 'SHI38997' => 'shi', 'SHI53759' => 'shi', 'SHI53886' => 'shi', 'SHI54714' => 'shi', 'SMO011G0041' => 'smo', 'SMO146G0251' => 'smo', 'SMO160G0004' => 'smo', 'SMO174G0057' => 'smo', 'SMO244G0089' => 'smo', 'SMO296G0011' => 'smo', 'Solyc01g091280.3' => 'sly', 'Solyc05g047610.3' => 'sly', 'Solyc05g047640.3' => 'sly', 'Solyc05g055630.3' => 'sly', 'Solyc10g018160.2' => 'sly', 'Solyc10g084820.2' => 'sly', 'Solyc10g086565.2' => 'sly', 'Sopen01g037030' => 'spe', 'Sopen05g027920' => 'spe', 'Sopen05g034070' => 'spe', 'Sopen10g007260' => 'spe', 'Sopen10g034260' => 'spe', 'Sopen10g035950' => 'spe', 'Sp3g07710' => 'spa', 'Sp4g27420' => 'spa', 'Sp5g02450' => 'spa', 'Sp6g01280' => 'spa', 'Sp6g38480' => 'spa', 'Sp7g20780' => 'spa', 'TAR374G1413' => 'tar', 'TAR623G1777' => 'tar', 'TAR629G2370' => 'tar', 'TAR633G1759' => 'tar', 'TAR636G3387' => 'tar', 'THA.LOC104802447' => 'tha', 'THA.LOC104813916' => 'tha', 'THA.LOC104816423' => 'tha', 'THA.LOC104817246' => 'tha', 'THA.LOC104825895' => 'tha', 'Thecc.01G335200' => 'tca', 'Thecc.01G377400' => 'tca', 'Thecc.03G262200' => 'tca', 'Thecc.05G036800' => 'tca', 'Thecc.10G080500' => 'tca', 'Thecc.10G080800' => 'tca', 'Thhalv10001560m.g' => 'esa', 'Thhalv10006120m.g' => 'esa', 'Thhalv10014375m.g' => 'esa', 'Thhalv10021264m.g' => 'esa', 'Thhalv10028856m.g' => 'esa', 'TPR.G1914' => 'tpr', 'TPR.G4757' => 'tpr', 'TPR.G5595' => 'tpr', 'TWI14G0952' => 'twi', 'TWI14G1307' => 'twi', 'TWI38G2143' => 'twi', 'TWI59G0826' => 'twi', 'TWI77G0527' => 'twi', 'TWI81G0150' => 'twi', 'unitig_21.g21018' => 'ugi', 'unitig_26.g9725' => 'ugi', 'unitig_744.g24653' => 'ugi', 'unitig_749.g13778' => 'ugi', 'unitig_899.g15035' => 'ugi', 'vmacro04296' => 'vma', 'vmacro04852' => 'vma', 'vmacro13404' => 'vma', 'vmacro20169' => 'vma', 'vmacro21014' => 'vma', 'VMungo0331G0237' => 'vmu', 'VMungo0331G0706' => 'vmu', 'VMungo0331G1361' => 'vmu', 'VMungo0331G1489' => 'vmu', 'VMungo0540G1037' => 'vmu', 'VMungo0720G2487' => 'vmu', 'VMungo0720G2721' => 'vmu', 'Zm00001eb086860' => 'zma', 'Zm00001eb104760' => 'zma', 'Zm00001eb148220' => 'zma', 'Zm00001eb259030' => 'zma', 'Zm00001eb289590' => 'zma', 'Zm00001eb420150' => 'zma' ), 'gf_id' => 'HOM05D000968', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000968' ), 'data_identifier' => 'HOM05D000968', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000968', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p31690' => 'bna', 'A03p36040' => 'bna', 'A03p53730' => 'bna', 'A04p01410' => 'bna', 'A05p05420' => 'bna', 'A05p39630' => 'bna', 'A05p39640' => 'bna', 'A09p00970' => 'bna', 'A09p53060' => 'bna', 'A10p31890' => 'bna', 'Aa31LG10G15040' => 'aar', 'Aa31LG1G21090' => 'aar', 'Aa31LG1G26900' => 'aar', 'Aa31LG3G1820' => 'aar', 'Aa31LG5G1100' => 'aar', 'Aa31LG6G4740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2265' => 'aag', 'Actinidia07998' => 'ach', 'Actinidia11266' => 'ach', 'Actinidia12682' => 'ach', 'Actinidia26479' => 'ach', 'Actinidia31406' => 'ach', 'Actinidia32437' => 'ach', 'Actinidia38862' => 'ach', 'Ah.05g174230' => 'amhyb', 'Ah.05g179070' => 'amhyb', 'Ah.05g179090' => 'amhyb', 'Ah.12g059950' => 'amhyb', 'AL3G20480' => 'aly', 'AL4G44520' => 'aly', 'AL5G43110' => 'aly', 'AL6G13890' => 'aly', 'AL6G52620' => 'aly', 'AL7G30830' => 'aly', 'Aqoxy1G00899' => 'aox', 'Aqoxy5G04333' => 'aox', 'Aqoxy7G00641' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3IZ0NN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4EF6AW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W9P8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79GA3M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C43NQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFCU6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G95YVJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCHK29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LU1UG8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX91RN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGB4B1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8DA0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9H7JI' => 'arhy', 'AT3G09320' => 'ath', 'AT3G60800' => 'ath', 'AT4G00840' => 'ath', 'AT4G22750' => 'ath', 'AT5G04270' => 'ath', 'ATR0090G003' => 'atr', 'ATR0559G349' => 'atr', 'ATR0680G261' => 'atr', 'ATR0810G048' => 'atr', 'Atru.chr12.831' => 'acertr', 'Atru.chr5.303' => 'acertr', 'Atru.chr5.748' => 'acertr', 'Atru.chr8.1999' => 'acertr', 'Atru.chr9.1436' => 'acertr', 'AUR62004211' => 'cqu', 'AUR62004548' => 'cqu', 'AUR62013637' => 'cqu', 'AUR62022662' => 'cqu', 'AUR62025777' => 'cqu', 'AUR62042386' => 'cqu', 'BcaB01g02310' => 'bca', 'BcaB01g06062' => 'bca', 'BcaB02g08975' => 'bca', 'BcaB02g08980' => 'bca', 'BcaC01g04228' => 'bca', 'BcaC01g06830' => 'bca', 'BcaC02g10186' => 'bca', 'BcaC02g12214' => 'bca', 'BcaC04g24101' => 'bca', 'BcaC05g29520' => 'bca', 'BcaC05g29661' => 'bca', 'BcaC06g32130' => 'bca', 'BcaC06g32131' => 'bca', 'BcaC07g40601' => 'bca', 'BcaC07g42641' => 'bca', 'BcaNung01038' => 'bca', 'BcaNung01676' => 'bca', 'BcaNung02480' => 'bca', 'BcaNung07376' => 'bca', 'BolC3t16146H' => 'bol', 'BolC3t16637H' => 'bol', 'BolC4t22257H' => 'bol', 'BolC4t24728H' => 'bol', 'BolC5t34517H' => 'bol', 'BolC7t45703H' => 'bol', 'BolC8t51166H' => 'bol', 'BolC9t53038H' => 'bol', 'BolC9t60000H' => 'bol', 'BraA01t01345Z' => 'bra', 'BraA01t01346Z' => 'bra', 'BraA01t01348Z' => 'bra', 'BraA03t12347Z' => 'bra', 'BraA03t12775Z' => 'bra', 'BraA03t14439Z' => 'bra', 'BraA04t15860Z' => 'bra', 'BraA05t19511Z' => 'bra', 'BraA05t22746Z' => 'bra', 'BraA09t35767Z' => 'bra', 'BraA09t40732Z' => 'bra', 'BraA10t45233Z' => 'bra', 'C03p38720' => 'bna', 'C03p43680' => 'bna', 'C04p06350' => 'bna', 'C04p31800' => 'bna', 'C05p58680' => 'bna', 'C07p52110' => 'bna', 'C08p35760' => 'bna', 'C09p01050' => 'bna', 'C09p72600' => 'bna', 'CAN.G106.2' => 'can', 'CAN.G1482.1' => 'can', 'CAN.G324.12' => 'can', 'CAN.G388.20' => 'can', 'CAN.G412.7' => 'can', 'CAN.G694.32' => 'can', 'CAN.G92.12' => 'can', 'CANSAT11G2353' => 'cansat', 'CANSAT21G1398' => 'cansat', 'CANSAT56G2456' => 'cansat', 'CANSAT56G3031' => 'cansat', 'CANSAT56G4539' => 'cansat', 'CARHR083680' => 'chi', 'CARHR171190' => 'chi', 'CARHR209010' => 'chi', 'CARHR229680' => 'chi', 'CARHR249490' => 'chi', 'Carub.0003s0844' => 'cru', 'Carub.0005s2755' => 'cru', 'Carub.0006s0322' => 'cru', 'Carub.0006s3586' => 'cru', 'Carub.0007s1855' => 'cru', 'Ca_07808_v3' => 'car', 'Ca_09535_v3' => 'car', 'Ca_10548_v3' => 'car', 'Ca_19913_v3' => 'car', 'Ca_19916_v3' => 'car', 'Ca_19975_v3' => 'car', 'CBR_g22876' => 'cbr', 'CBR_g22879' => 'cbr', 'CBR_g38491' => 'cbr', 'CBR_g54185' => 'cbr', 'CBR_g54190' => 'cbr', 'Cc02_g11020' => 'ccan', 'Cc02_g23920' => 'ccan', 'Cc02_g39860' => 'ccan', 'Cc02_g39870' => 'ccan', 'Cc03_g06760' => 'ccan', 'Cc06_g02450' => 'ccan', 'Cc09_g09450' => 'ccan', 'CDE02G1959' => 'cde', 'CDE04G0600' => 'cde', 'CDE07G1996' => 'cde', 'CDE07G2078' => 'cde', 'CDE11G0611' => 'cde', 'Cfa001683' => 'cfa', 'Cfa001734' => 'cfa', 'Cfa001737' => 'cfa', 'Cfa003751' => 'cfa', 'Cfa012019' => 'cfa', 'Cfa017353' => 'cfa', 'Cfa017732' => 'cfa', 'Cfa022464' => 'cfa', 'Ciclev10012400m.g' => 'ccl', 'Ciclev10021242m.g' => 'ccl', 'Ciclev10021302m.g' => 'ccl', 'Ciclev10021463m.g' => 'ccl', 'Ciclev10032359m.g' => 'ccl', 'CiPaw.01G081000' => 'cil', 'CiPaw.01G262500' => 'cil', 'CiPaw.01G269800' => 'cil', 'CiPaw.02G168400' => 'cil', 'CiPaw.05G119500' => 'cil', 'CiPaw.11G147300' => 'cil', 'ClCG01G003630' => 'cla', 'ClCG05G000510' => 'cla', 'ClCG05G002300' => 'cla', 'ClCG08G007650' => 'cla', 'ClCG10G021250' => 'cla', 'COL.COLO4_06218' => 'col', 'COL.COLO4_12538' => 'col', 'COL.COLO4_14775' => 'col', 'COL.COLO4_23875' => 'col', 'Cpa.g.sc141.16' => 'cpa', 'Cpa.g.sc169.16' => 'cpa', 'Cpa.g.sc244.4' => 'cpa', 'Cpa.g.sc244.5' => 'cpa', 'Cpa.g.sc29.87' => 'cpa', 'Cpa.g.sc53.115' => 'cpa', 'Cre03.g207502' => 'cre', 'Cre06.g277000' => 'cre', 'Cre09.g394050' => 'cre', 'CsaV3_3G007680' => 'csa', 'CsaV3_3G009710' => 'csa', 'CsaV3_3G034790' => 'csa', 'CsaV3_5G003750' => 'csa', 'CsaV3_6G036620' => 'csa', 'CSS0002288' => 'camsi', 'CSS0011250' => 'camsi', 'CSS0021619' => 'camsi', 'CSS0046701' => 'camsi', 'DCAR_006420' => 'dca', 'DCAR_006865' => 'dca', 'DCAR_008558' => 'dca', 'DCAR_028754' => 'dca', 'DCAR_028755' => 'dca', 'Dinv31218' => 'din', 'Dinv32371' => 'din', 'Dinv34250' => 'din', 'Dinv37156' => 'din', 'Dinv43704' => 'din', 'Duzib093G1811' => 'dzi', 'Duzib106G1622' => 'dzi', 'Duzib114G0504' => 'dzi', 'Duzib128G0338' => 'dzi', 'Duzib128G1577' => 'dzi', 'Duzib133G0104' => 'dzi', 'Duzib133G1080' => 'dzi', 'Duzib138G0324' => 'dzi', 'Duzib138G0394' => 'dzi', 'Duzib205G0122' => 'dzi', 'Duzib268G1020' => 'dzi', 'Duzib268G1359' => 'dzi', 'ECA232G3929' => 'eca', 'ECA236G2210' => 'eca', 'ECA236G2287' => 'eca', 'ECA240G4568' => 'eca', 'ECA247G0894' => 'eca', 'EL10Ac1g00200' => 'bvu', 'EL10Ac1g00886' => 'bvu', 'EL10As1g23091' => 'bvu', 'EL10As1g23092' => 'bvu', 'Eucgr.A01284' => 'egr', 'Eucgr.A01285' => 'egr', 'Eucgr.D02456' => 'egr', 'Eucgr.E00018' => 'egr', 'Eucgr.E01439' => 'egr', 'Eucgr.G02859' => 'egr', 'FAN01G0168' => 'fan', 'FAN01G0453' => 'fan', 'FAN01G2761' => 'fan', 'FAN02G1239' => 'fan', 'FAN03G0645' => 'fan', 'FAN03G2707' => 'fan', 'FAN03G2978' => 'fan', 'FAN04G0227' => 'fan', 'FAN06G0091' => 'fan', 'FAN06G1418' => 'fan', 'FAN06G1512' => 'fan', 'FAN06G1986' => 'fan', 'FAN06G2905' => 'fan', 'FAN06G4325' => 'fan', 'FAN08G0033' => 'fan', 'FAN09G0642' => 'fan', 'FAN10G1763' => 'fan', 'FAN10G2026' => 'fan', 'FAN10G2513' => 'fan', 'FAN10G3402' => 'fan', 'FAN10G3564' => 'fan', 'FAN10G3987' => 'fan', 'FAN13G1490' => 'fan', 'FAN14G5857' => 'fan', 'FAN18G1188' => 'fan', 'FvH4_5g00750' => 'fve', 'FvH4_6g13410' => 'fve', 'FvH4_7g11740' => 'fve', 'FvH4_7g17410' => 'fve', 'FvH4_7g18860' => 'fve', 'Glyma.01G099100' => 'gma', 'Glyma.01G142300' => 'gma', 'Glyma.03G025500' => 'gma', 'Glyma.03G069700' => 'gma', 'Glyma.03G260000' => 'gma', 'Glyma.09G269800' => 'gma', 'Glyma.10G208700' => 'gma', 'Glyma.18G220400' => 'gma', 'Glyma.20G182000' => 'gma', 'Gohir.A01G221726' => 'ghi', 'Gohir.A07G134600' => 'ghi', 'Gohir.A07G146000' => 'ghi', 'Gohir.A08G173900' => 'ghi', 'Gohir.A09G194900' => 'ghi', 'Gohir.A10G204100' => 'ghi', 'Gohir.A11G080600' => 'ghi', 'Gohir.A11G327500' => 'ghi', 'Gohir.A12G101800' => 'ghi', 'Gohir.D01G211200' => 'ghi', 'Gohir.D07G139200' => 'ghi', 'Gohir.D07G152100' => 'ghi', 'Gohir.D08G192600' => 'ghi', 'Gohir.D09G189200' => 'ghi', 'Gohir.D10G212000' => 'ghi', 'Gohir.D11G085200' => 'ghi', 'Gohir.D11G346400' => 'ghi', 'Gohir.D12G104800' => 'ghi', 'Gorai.001G151300' => 'gra', 'Gorai.001G174100' => 'gra', 'Gorai.002G257000' => 'gra', 'Gorai.004G202600' => 'gra', 'Gorai.007G090900' => 'gra', 'Gorai.007G376700' => 'gra', 'Gorai.008G114100' => 'gra', 'Gorai.011G237900' => 'gra', 'GSVIVG01005450001' => 'vvi', 'GSVIVG01016232001' => 'vvi', 'GSVIVG01026157001' => 'vvi', 'GSVIVG01027419001' => 'vvi', 'GSVIVG01027631001' => 'vvi', 'GSVIVG01034143001' => 'vvi', 'HanXRQChr03g0093921' => 'han', 'HanXRQChr04g0120001' => 'han', 'HanXRQChr04g0122561' => 'han', 'HanXRQChr09g0246851' => 'han', 'HanXRQChr10g0293311' => 'han', 'HanXRQChr13g0425231' => 'han', 'HanXRQChr16g0532571' => 'han', 'Haze_09050' => 'cav', 'Haze_15715' => 'cav', 'Haze_15716' => 'cav', 'Haze_16803' => 'cav', 'Haze_16850' => 'cav', 'Hma1.2p1_0301F.1_g118655' => 'hma', 'Hma1.2p1_0309F.1_g120590' => 'hma', 'Hma1.2p1_0936F.1_g238900' => 'hma', 'Hma1.2p1_3552F.1_g336740' => 'hma', 'HPP92_003520' => 'vpl', 'HPP92_006628' => 'vpl', 'HPP92_006645' => 'vpl', 'HPP92_014669' => 'vpl', 'HPP92_015077' => 'vpl', 'Hund16742' => 'sun', 'Hund17022' => 'sun', 'Lalb_Chr02g0152131' => 'lal', 'Lalb_Chr05g0225371' => 'lal', 'Lalb_Chr07g0189841' => 'lal', 'Lalb_Chr07g0192961' => 'lal', 'Lalb_Chr12g0208221' => 'lal', 'Lalb_Chr13g0291211' => 'lal', 'Lalb_Chr13g0291781' => 'lal', 'Lalb_Chr18g0044651' => 'lal', 'Lalb_Chr21g0313731' => 'lal', 'Lj1g0022533' => 'lja', 'Lj2A18T50' => 'lonja', 'Lj2A92G93' => 'lonja', 'Lj3A965T73' => 'lonja', 'Lj3g0000673' => 'lja', 'Lj3g0002666' => 'lja', 'Lj4g0016985' => 'lja', 'Lj5g0003625' => 'lja', 'Lj7A529G36' => 'lonja', 'Lj9A569T49' => 'lonja', 'Lj9A604T63' => 'lonja', 'Lsat_1_v5_gn_3_132060' => 'lsa', 'Lsat_1_v5_gn_4_68941' => 'lsa', 'Lsat_1_v5_gn_5_95580' => 'lsa', 'Lsat_1_v5_gn_7_161' => 'lsa', 'Lsat_1_v5_gn_7_7041' => 'lsa', 'Lsat_1_v5_gn_9_33481' => 'lsa', 'Lsat_1_v5_gn_9_68260' => 'lsa', 'Manes.01G073100' => 'mes', 'Manes.01G266300' => 'mes', 'Manes.02G033300' => 'mes', 'Manes.05G017900' => 'mes', 'Manes.05G046100' => 'mes', 'Manes.08G080900' => 'mes', 'Manes.10G049400' => 'mes', 'Mapoly0009s0186' => 'mpo', 'Mapoly0036s0118' => 'mpo', 'Mapoly0101s0046' => 'mpo', 'MBI04_g30218_MAGBIO' => 'mbi', 'MBI04_g35564_MAGBIO' => 'mbi', 'MBI12_g34011_MAGBIO' => 'mbi', 'MBI14_g04655_MAGBIO' => 'mbi', 'MCO07G653' => 'mco', 'MCO10G173' => 'mco', 'MD01G1087100' => 'mdo', 'MD01G1104200' => 'mdo', 'MD02G1205100' => 'mdo', 'MD04G1079200' => 'mdo', 'MD04G1131400' => 'mdo', 'MD07G1121600' => 'mdo', 'MD07G1157300' => 'mdo', 'MD07G1171000' => 'mdo', 'MD12G1144500' => 'mdo', 'Medtr1g094610' => 'mtr', 'Medtr4g021795' => 'mtr', 'Medtr4g023760' => 'mtr', 'Medtr7g118050' => 'mtr', 'MELO3C005582.2' => 'cme', 'MELO3C005989.2' => 'cme', 'MELO3C006192.2' => 'cme', 'MELO3C009248.2' => 'cme', 'MELO3C019817.2' => 'cme', 'Migut.B01625' => 'egut', 'Migut.B01915' => 'egut', 'Migut.F01721' => 'egut', 'Migut.J00314' => 'egut', 'MSTRG.20742' => 'ama', 'MSTRG.8134' => 'ama', 'Nitab4.5_0000096g0010' => 'nta', 'Nitab4.5_0000202g0030' => 'nta', 'Nitab4.5_0000216g0370' => 'nta', 'Nitab4.5_0000457g0230' => 'nta', 'Nitab4.5_0001702g0170' => 'nta', 'Nitab4.5_0003607g0010' => 'nta', 'Nitab4.5_0004917g0020' => 'nta', 'Nitab4.5_0007059g0010' => 'nta', 'Nitab4.5_0007184g0010' => 'nta', 'Nitab4.5_0007346g0020' => 'nta', 'Nn1g00410' => 'nnu', 'Nn1g01252' => 'nnu', 'Nn2g11168' => 'nnu', 'Nn2g13403' => 'nnu', 'Nn2g13760' => 'nnu', 'Nn4g26380' => 'nnu', 'Oeu000806.2' => 'oeu', 'Oeu005788.1' => 'oeu', 'Oeu006900.3' => 'oeu', 'Oeu007797.1' => 'oeu', 'Oeu011932.1' => 'oeu', 'Oeu022739.1' => 'oeu', 'Oeu037918.1' => 'oeu', 'Oeu055490.2' => 'oeu', 'Os01g0844400' => 'osa', 'Os02g0819100' => 'osa', 'Os03g0804300' => 'osa', 'Os05g0458000' => 'osa', 'Os07g0467800' => 'osa', 'Os12g0602200' => 'osa', 'Peaxi162Scf00013g03444' => 'pax', 'Peaxi162Scf00094g01120' => 'pax', 'Peaxi162Scf00191g01211' => 'pax', 'Peaxi162Scf00238g01110' => 'pax', 'Peaxi162Scf00330g00719' => 'pax', 'Peaxi162Scf00627g00018' => 'pax', 'PGR031G2686' => 'pgr', 'PGR042G0809' => 'pgr', 'PGR142G0193' => 'pgr', 'PGSC0003DMG400011066' => 'stu', 'PGSC0003DMG400012041' => 'stu', 'PGSC0003DMG400013678' => 'stu', 'PGSC0003DMG400023477' => 'stu', 'PGSC0003DMG400025956' => 'stu', 'PGSC0003DMG401019151' => 'stu', 'Phvul.006G116400' => 'pvu', 'Phvul.007G097300' => 'pvu', 'Phvul.010G015000' => 'pvu', 'Phvul.010G083900' => 'pvu', 'Potri.001G117100' => 'ptr', 'Potri.002G147300' => 'ptr', 'Potri.003G115600' => 'ptr', 'Potri.006G087400' => 'ptr', 'Potri.010G226100' => 'ptr', 'Potri.014G069200' => 'ptr', 'Potri.014G104000' => 'ptr', 'Potri.016G100200' => 'ptr', 'Pp3c10_20450' => 'ppa', 'Pp3c1_42400' => 'ppa', 'Pp3c3_24390' => 'ppa', 'Pp3c3_2860' => 'ppa', 'PRCOL_00003193' => 'pco', 'Prupe.2G144500' => 'ppe', 'Prupe.2G195700' => 'ppe', 'Prupe.2G209800' => 'ppe', 'Prupe.5G080000' => 'ppe', 'Prupe.6G257900' => 'ppe', 'Psat3g001160' => 'psa', 'Psat6g181880' => 'psa', 'Psat7g233720' => 'psa', 'PSO063G7587' => 'pso', 'PSO339G2145' => 'pso', 'PSO339G3369' => 'pso', 'PSO478G2747' => 'pso', 'PSO513G0140' => 'pso', 'PSO782G1614' => 'pso', 'PSO782G4889' => 'pso', 'PSO782G5485' => 'pso', 'PSO801G0241' => 'pso', 'QL07p048854' => 'qlo', 'QL08p046745' => 'qlo', 'QL08p052606' => 'qlo', 'QL08p053414' => 'qlo', 'QL08p054868' => 'qlo', 'RcHm_v2.0_Chr1g0350251' => 'rch', 'RcHm_v2.0_Chr1g0360851' => 'rch', 'RcHm_v2.0_Chr1g0362791' => 'rch', 'RcHm_v2.0_Chr3g0466281' => 'rch', 'RcHm_v2.0_Chr7g0201481' => 'rch', 'Rhsim01G0148600' => 'rsi', 'Rhsim05G0194400' => 'rsi', 'Rhsim07G0000700' => 'rsi', 'Rhsim07G0000800' => 'rsi', 'Rhsim07G0027900' => 'rsi', 'Rhsim09G0149500' => 'rsi', 'RhsimUnG0186900' => 'rsi', 'Sabra01G0089900' => 'sbr', 'Sabra02G0114700' => 'sbr', 'Sabra02G0116300' => 'sbr', 'Sabra03G0080100' => 'sbr', 'Sabra08G0024300' => 'sbr', 'Sabra10G0174300' => 'sbr', 'Sabra14G0048900' => 'sbr', 'Sabra14G0076500' => 'sbr', 'SalBow5G2513' => 'sbo', 'Sc01g0002300' => 'sci', 'Sc01g0004450' => 'sci', 'Sc06g0001680' => 'sci', 'Sc23g0003580' => 'sci', 'Sed0000913' => 'sed', 'Sed0001655' => 'sed', 'Sed0007745' => 'sed', 'Sed0010951' => 'sed', 'Sed0017599' => 'sed', 'Sed0021405' => 'sed', 'Sed0022810' => 'sed', 'SEGI_07099' => 'sgi', 'SEGI_11931' => 'sgi', 'SEGI_13187' => 'sgi', 'SEGI_29958' => 'sgi', 'SEGI_36351' => 'sgi', 'SGA_v2.0_scaffold126G33770' => 'sas', 'SGA_v2.0_scaffold153G37003' => 'sas', 'SGA_v2.0_scaffold2G01359' => 'sas', 'SGA_v2.0_scaffold5G03064' => 'sas', 'SGA_v2.0_scaffold95G28903' => 'sas', 'SHI12701' => 'shi', 'SHI26410' => 'shi', 'SHI38997' => 'shi', 'SHI53759' => 'shi', 'SHI53886' => 'shi', 'SHI54714' => 'shi', 'SMO011G0041' => 'smo', 'SMO146G0251' => 'smo', 'SMO160G0004' => 'smo', 'SMO174G0057' => 'smo', 'SMO244G0089' => 'smo', 'SMO296G0011' => 'smo', 'Solyc01g091280.3' => 'sly', 'Solyc05g047610.3' => 'sly', 'Solyc05g047640.3' => 'sly', 'Solyc05g055630.3' => 'sly', 'Solyc10g018160.2' => 'sly', 'Solyc10g084820.2' => 'sly', 'Solyc10g086565.2' => 'sly', 'Sopen01g037030' => 'spe', 'Sopen05g027920' => 'spe', 'Sopen05g034070' => 'spe', 'Sopen10g007260' => 'spe', 'Sopen10g034260' => 'spe', 'Sopen10g035950' => 'spe', 'Sp3g07710' => 'spa', 'Sp4g27420' => 'spa', 'Sp5g02450' => 'spa', 'Sp6g01280' => 'spa', 'Sp6g38480' => 'spa', 'Sp7g20780' => 'spa', 'TAR374G1413' => 'tar', 'TAR623G1777' => 'tar', 'TAR629G2370' => 'tar', 'TAR633G1759' => 'tar', 'TAR636G3387' => 'tar', 'THA.LOC104802447' => 'tha', 'THA.LOC104813916' => 'tha', 'THA.LOC104816423' => 'tha', 'THA.LOC104817246' => 'tha', 'THA.LOC104825895' => 'tha', 'Thecc.01G335200' => 'tca', 'Thecc.01G377400' => 'tca', 'Thecc.03G262200' => 'tca', 'Thecc.05G036800' => 'tca', 'Thecc.10G080500' => 'tca', 'Thecc.10G080800' => 'tca', 'Thhalv10001560m.g' => 'esa', 'Thhalv10006120m.g' => 'esa', 'Thhalv10014375m.g' => 'esa', 'Thhalv10021264m.g' => 'esa', 'Thhalv10028856m.g' => 'esa', 'TPR.G1914' => 'tpr', 'TPR.G4757' => 'tpr', 'TPR.G5595' => 'tpr', 'TWI14G0952' => 'twi', 'TWI14G1307' => 'twi', 'TWI38G2143' => 'twi', 'TWI59G0826' => 'twi', 'TWI77G0527' => 'twi', 'TWI81G0150' => 'twi', 'unitig_21.g21018' => 'ugi', 'unitig_26.g9725' => 'ugi', 'unitig_744.g24653' => 'ugi', 'unitig_749.g13778' => 'ugi', 'unitig_899.g15035' => 'ugi', 'vmacro04296' => 'vma', 'vmacro04852' => 'vma', 'vmacro13404' => 'vma', 'vmacro20169' => 'vma', 'vmacro21014' => 'vma', 'VMungo0331G0237' => 'vmu', 'VMungo0331G0706' => 'vmu', 'VMungo0331G1361' => 'vmu', 'VMungo0331G1489' => 'vmu', 'VMungo0540G1037' => 'vmu', 'VMungo0720G2487' => 'vmu', 'VMungo0720G2721' => 'vmu', 'Zm00001eb086860' => 'zma', 'Zm00001eb104760' => 'zma', 'Zm00001eb148220' => 'zma', 'Zm00001eb259030' => 'zma', 'Zm00001eb289590' => 'zma', 'Zm00001eb420150' => 'zma' ) $gf_id = 'HOM05D000968' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000968' ) $data_identifier = 'HOM05D000968' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 19, 'bol' => (int) 9, 'bra' => (int) 12, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 5, 'ccan' => (int) 7, 'cde' => (int) 5, 'cfa' => (int) 8, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 4, 'dca' => (int) 5, 'din' => (int) 5, 'dzi' => (int) 12, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 25, 'fve' => (int) 5, 'gma' => (int) 9, 'ghi' => (int) 18, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 7, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 5, 'sun' => (int) 2, 'lal' => (int) 9, 'lja' => (int) 5, 'lonja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 9, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 2, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 3, 'stu' => (int) 6, 'pvu' => (int) 4, 'ptr' => (int) 8, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 3, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 1, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 5, 'sas' => (int) 5, 'shi' => (int) 6, 'smo' => (int) 6, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 3, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420150' $species_info = array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ) $local_species = 'ach' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000968', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p31690' => 'bna', 'A03p36040' => 'bna', 'A03p53730' => 'bna', 'A04p01410' => 'bna', 'A05p05420' => 'bna', 'A05p39630' => 'bna', 'A05p39640' => 'bna', 'A09p00970' => 'bna', 'A09p53060' => 'bna', 'A10p31890' => 'bna', 'Aa31LG10G15040' => 'aar', 'Aa31LG1G21090' => 'aar', 'Aa31LG1G26900' => 'aar', 'Aa31LG3G1820' => 'aar', 'Aa31LG5G1100' => 'aar', 'Aa31LG6G4740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2265' => 'aag', 'Actinidia07998' => 'ach', 'Actinidia11266' => 'ach', 'Actinidia12682' => 'ach', 'Actinidia26479' => 'ach', 'Actinidia31406' => 'ach', 'Actinidia32437' => 'ach', 'Actinidia38862' => 'ach', 'Ah.05g174230' => 'amhyb', 'Ah.05g179070' => 'amhyb', 'Ah.05g179090' => 'amhyb', 'Ah.12g059950' => 'amhyb', 'AL3G20480' => 'aly', 'AL4G44520' => 'aly', 'AL5G43110' => 'aly', 'AL6G13890' => 'aly', 'AL6G52620' => 'aly', 'AL7G30830' => 'aly', 'Aqoxy1G00899' => 'aox', 'Aqoxy5G04333' => 'aox', 'Aqoxy7G00641' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3IZ0NN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4EF6AW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W9P8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79GA3M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C43NQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFCU6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G95YVJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCHK29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LU1UG8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX91RN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGB4B1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8DA0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9H7JI' => 'arhy', 'AT3G09320' => 'ath', 'AT3G60800' => 'ath', 'AT4G00840' => 'ath', 'AT4G22750' => 'ath', 'AT5G04270' => 'ath', 'ATR0090G003' => 'atr', 'ATR0559G349' => 'atr', 'ATR0680G261' => 'atr', 'ATR0810G048' => 'atr', 'Atru.chr12.831' => 'acertr', 'Atru.chr5.303' => 'acertr', 'Atru.chr5.748' => 'acertr', 'Atru.chr8.1999' => 'acertr', 'Atru.chr9.1436' => 'acertr', 'AUR62004211' => 'cqu', 'AUR62004548' => 'cqu', 'AUR62013637' => 'cqu', 'AUR62022662' => 'cqu', 'AUR62025777' => 'cqu', 'AUR62042386' => 'cqu', 'BcaB01g02310' => 'bca', 'BcaB01g06062' => 'bca', 'BcaB02g08975' => 'bca', 'BcaB02g08980' => 'bca', 'BcaC01g04228' => 'bca', 'BcaC01g06830' => 'bca', 'BcaC02g10186' => 'bca', 'BcaC02g12214' => 'bca', 'BcaC04g24101' => 'bca', 'BcaC05g29520' => 'bca', 'BcaC05g29661' => 'bca', 'BcaC06g32130' => 'bca', 'BcaC06g32131' => 'bca', 'BcaC07g40601' => 'bca', 'BcaC07g42641' => 'bca', 'BcaNung01038' => 'bca', 'BcaNung01676' => 'bca', 'BcaNung02480' => 'bca', 'BcaNung07376' => 'bca', 'BolC3t16146H' => 'bol', 'BolC3t16637H' => 'bol', 'BolC4t22257H' => 'bol', 'BolC4t24728H' => 'bol', 'BolC5t34517H' => 'bol', 'BolC7t45703H' => 'bol', 'BolC8t51166H' => 'bol', 'BolC9t53038H' => 'bol', 'BolC9t60000H' => 'bol', 'BraA01t01345Z' => 'bra', 'BraA01t01346Z' => 'bra', 'BraA01t01348Z' => 'bra', 'BraA03t12347Z' => 'bra', 'BraA03t12775Z' => 'bra', 'BraA03t14439Z' => 'bra', 'BraA04t15860Z' => 'bra', 'BraA05t19511Z' => 'bra', 'BraA05t22746Z' => 'bra', 'BraA09t35767Z' => 'bra', 'BraA09t40732Z' => 'bra', 'BraA10t45233Z' => 'bra', 'C03p38720' => 'bna', 'C03p43680' => 'bna', 'C04p06350' => 'bna', 'C04p31800' => 'bna', 'C05p58680' => 'bna', 'C07p52110' => 'bna', 'C08p35760' => 'bna', 'C09p01050' => 'bna', 'C09p72600' => 'bna', 'CAN.G106.2' => 'can', 'CAN.G1482.1' => 'can', 'CAN.G324.12' => 'can', 'CAN.G388.20' => 'can', 'CAN.G412.7' => 'can', 'CAN.G694.32' => 'can', 'CAN.G92.12' => 'can', 'CANSAT11G2353' => 'cansat', 'CANSAT21G1398' => 'cansat', 'CANSAT56G2456' => 'cansat', 'CANSAT56G3031' => 'cansat', 'CANSAT56G4539' => 'cansat', 'CARHR083680' => 'chi', 'CARHR171190' => 'chi', 'CARHR209010' => 'chi', 'CARHR229680' => 'chi', 'CARHR249490' => 'chi', 'Carub.0003s0844' => 'cru', 'Carub.0005s2755' => 'cru', 'Carub.0006s0322' => 'cru', 'Carub.0006s3586' => 'cru', 'Carub.0007s1855' => 'cru', 'Ca_07808_v3' => 'car', 'Ca_09535_v3' => 'car', 'Ca_10548_v3' => 'car', 'Ca_19913_v3' => 'car', 'Ca_19916_v3' => 'car', 'Ca_19975_v3' => 'car', 'CBR_g22876' => 'cbr', 'CBR_g22879' => 'cbr', 'CBR_g38491' => 'cbr', 'CBR_g54185' => 'cbr', 'CBR_g54190' => 'cbr', 'Cc02_g11020' => 'ccan', 'Cc02_g23920' => 'ccan', 'Cc02_g39860' => 'ccan', 'Cc02_g39870' => 'ccan', 'Cc03_g06760' => 'ccan', 'Cc06_g02450' => 'ccan', 'Cc09_g09450' => 'ccan', 'CDE02G1959' => 'cde', 'CDE04G0600' => 'cde', 'CDE07G1996' => 'cde', 'CDE07G2078' => 'cde', 'CDE11G0611' => 'cde', 'Cfa001683' => 'cfa', 'Cfa001734' => 'cfa', 'Cfa001737' => 'cfa', 'Cfa003751' => 'cfa', 'Cfa012019' => 'cfa', 'Cfa017353' => 'cfa', 'Cfa017732' => 'cfa', 'Cfa022464' => 'cfa', 'Ciclev10012400m.g' => 'ccl', 'Ciclev10021242m.g' => 'ccl', 'Ciclev10021302m.g' => 'ccl', 'Ciclev10021463m.g' => 'ccl', 'Ciclev10032359m.g' => 'ccl', 'CiPaw.01G081000' => 'cil', 'CiPaw.01G262500' => 'cil', 'CiPaw.01G269800' => 'cil', 'CiPaw.02G168400' => 'cil', 'CiPaw.05G119500' => 'cil', 'CiPaw.11G147300' => 'cil', 'ClCG01G003630' => 'cla', 'ClCG05G000510' => 'cla', 'ClCG05G002300' => 'cla', 'ClCG08G007650' => 'cla', 'ClCG10G021250' => 'cla', 'COL.COLO4_06218' => 'col', 'COL.COLO4_12538' => 'col', 'COL.COLO4_14775' => 'col', 'COL.COLO4_23875' => 'col', 'Cpa.g.sc141.16' => 'cpa', 'Cpa.g.sc169.16' => 'cpa', 'Cpa.g.sc244.4' => 'cpa', 'Cpa.g.sc244.5' => 'cpa', 'Cpa.g.sc29.87' => 'cpa', 'Cpa.g.sc53.115' => 'cpa', 'Cre03.g207502' => 'cre', 'Cre06.g277000' => 'cre', 'Cre09.g394050' => 'cre', 'CsaV3_3G007680' => 'csa', 'CsaV3_3G009710' => 'csa', 'CsaV3_3G034790' => 'csa', 'CsaV3_5G003750' => 'csa', 'CsaV3_6G036620' => 'csa', 'CSS0002288' => 'camsi', 'CSS0011250' => 'camsi', 'CSS0021619' => 'camsi', 'CSS0046701' => 'camsi', 'DCAR_006420' => 'dca', 'DCAR_006865' => 'dca', 'DCAR_008558' => 'dca', 'DCAR_028754' => 'dca', 'DCAR_028755' => 'dca', 'Dinv31218' => 'din', 'Dinv32371' => 'din', 'Dinv34250' => 'din', 'Dinv37156' => 'din', 'Dinv43704' => 'din', 'Duzib093G1811' => 'dzi', 'Duzib106G1622' => 'dzi', 'Duzib114G0504' => 'dzi', 'Duzib128G0338' => 'dzi', 'Duzib128G1577' => 'dzi', 'Duzib133G0104' => 'dzi', 'Duzib133G1080' => 'dzi', 'Duzib138G0324' => 'dzi', 'Duzib138G0394' => 'dzi', 'Duzib205G0122' => 'dzi', 'Duzib268G1020' => 'dzi', 'Duzib268G1359' => 'dzi', 'ECA232G3929' => 'eca', 'ECA236G2210' => 'eca', 'ECA236G2287' => 'eca', 'ECA240G4568' => 'eca', 'ECA247G0894' => 'eca', 'EL10Ac1g00200' => 'bvu', 'EL10Ac1g00886' => 'bvu', 'EL10As1g23091' => 'bvu', 'EL10As1g23092' => 'bvu', 'Eucgr.A01284' => 'egr', 'Eucgr.A01285' => 'egr', 'Eucgr.D02456' => 'egr', 'Eucgr.E00018' => 'egr', 'Eucgr.E01439' => 'egr', 'Eucgr.G02859' => 'egr', 'FAN01G0168' => 'fan', 'FAN01G0453' => 'fan', 'FAN01G2761' => 'fan', 'FAN02G1239' => 'fan', 'FAN03G0645' => 'fan', 'FAN03G2707' => 'fan', 'FAN03G2978' => 'fan', 'FAN04G0227' => 'fan', 'FAN06G0091' => 'fan', 'FAN06G1418' => 'fan', 'FAN06G1512' => 'fan', 'FAN06G1986' => 'fan', 'FAN06G2905' => 'fan', 'FAN06G4325' => 'fan', 'FAN08G0033' => 'fan', 'FAN09G0642' => 'fan', 'FAN10G1763' => 'fan', 'FAN10G2026' => 'fan', 'FAN10G2513' => 'fan', 'FAN10G3402' => 'fan', 'FAN10G3564' => 'fan', 'FAN10G3987' => 'fan', 'FAN13G1490' => 'fan', 'FAN14G5857' => 'fan', 'FAN18G1188' => 'fan', 'FvH4_5g00750' => 'fve', 'FvH4_6g13410' => 'fve', 'FvH4_7g11740' => 'fve', 'FvH4_7g17410' => 'fve', 'FvH4_7g18860' => 'fve', 'Glyma.01G099100' => 'gma', 'Glyma.01G142300' => 'gma', 'Glyma.03G025500' => 'gma', 'Glyma.03G069700' => 'gma', 'Glyma.03G260000' => 'gma', 'Glyma.09G269800' => 'gma', 'Glyma.10G208700' => 'gma', 'Glyma.18G220400' => 'gma', 'Glyma.20G182000' => 'gma', 'Gohir.A01G221726' => 'ghi', 'Gohir.A07G134600' => 'ghi', 'Gohir.A07G146000' => 'ghi', 'Gohir.A08G173900' => 'ghi', 'Gohir.A09G194900' => 'ghi', 'Gohir.A10G204100' => 'ghi', 'Gohir.A11G080600' => 'ghi', 'Gohir.A11G327500' => 'ghi', 'Gohir.A12G101800' => 'ghi', 'Gohir.D01G211200' => 'ghi', 'Gohir.D07G139200' => 'ghi', 'Gohir.D07G152100' => 'ghi', 'Gohir.D08G192600' => 'ghi', 'Gohir.D09G189200' => 'ghi', 'Gohir.D10G212000' => 'ghi', 'Gohir.D11G085200' => 'ghi', 'Gohir.D11G346400' => 'ghi', 'Gohir.D12G104800' => 'ghi', 'Gorai.001G151300' => 'gra', 'Gorai.001G174100' => 'gra', 'Gorai.002G257000' => 'gra', 'Gorai.004G202600' => 'gra', 'Gorai.007G090900' => 'gra', 'Gorai.007G376700' => 'gra', 'Gorai.008G114100' => 'gra', 'Gorai.011G237900' => 'gra', 'GSVIVG01005450001' => 'vvi', 'GSVIVG01016232001' => 'vvi', 'GSVIVG01026157001' => 'vvi', 'GSVIVG01027419001' => 'vvi', 'GSVIVG01027631001' => 'vvi', 'GSVIVG01034143001' => 'vvi', 'HanXRQChr03g0093921' => 'han', 'HanXRQChr04g0120001' => 'han', 'HanXRQChr04g0122561' => 'han', 'HanXRQChr09g0246851' => 'han', 'HanXRQChr10g0293311' => 'han', 'HanXRQChr13g0425231' => 'han', 'HanXRQChr16g0532571' => 'han', 'Haze_09050' => 'cav', 'Haze_15715' => 'cav', 'Haze_15716' => 'cav', 'Haze_16803' => 'cav', 'Haze_16850' => 'cav', 'Hma1.2p1_0301F.1_g118655' => 'hma', 'Hma1.2p1_0309F.1_g120590' => 'hma', 'Hma1.2p1_0936F.1_g238900' => 'hma', 'Hma1.2p1_3552F.1_g336740' => 'hma', 'HPP92_003520' => 'vpl', 'HPP92_006628' => 'vpl', 'HPP92_006645' => 'vpl', 'HPP92_014669' => 'vpl', 'HPP92_015077' => 'vpl', 'Hund16742' => 'sun', 'Hund17022' => 'sun', 'Lalb_Chr02g0152131' => 'lal', 'Lalb_Chr05g0225371' => 'lal', 'Lalb_Chr07g0189841' => 'lal', 'Lalb_Chr07g0192961' => 'lal', 'Lalb_Chr12g0208221' => 'lal', 'Lalb_Chr13g0291211' => 'lal', 'Lalb_Chr13g0291781' => 'lal', 'Lalb_Chr18g0044651' => 'lal', 'Lalb_Chr21g0313731' => 'lal', 'Lj1g0022533' => 'lja', 'Lj2A18T50' => 'lonja', 'Lj2A92G93' => 'lonja', 'Lj3A965T73' => 'lonja', 'Lj3g0000673' => 'lja', 'Lj3g0002666' => 'lja', 'Lj4g0016985' => 'lja', 'Lj5g0003625' => 'lja', 'Lj7A529G36' => 'lonja', 'Lj9A569T49' => 'lonja', 'Lj9A604T63' => 'lonja', 'Lsat_1_v5_gn_3_132060' => 'lsa', 'Lsat_1_v5_gn_4_68941' => 'lsa', 'Lsat_1_v5_gn_5_95580' => 'lsa', 'Lsat_1_v5_gn_7_161' => 'lsa', 'Lsat_1_v5_gn_7_7041' => 'lsa', 'Lsat_1_v5_gn_9_33481' => 'lsa', 'Lsat_1_v5_gn_9_68260' => 'lsa', 'Manes.01G073100' => 'mes', 'Manes.01G266300' => 'mes', 'Manes.02G033300' => 'mes', 'Manes.05G017900' => 'mes', 'Manes.05G046100' => 'mes', 'Manes.08G080900' => 'mes', 'Manes.10G049400' => 'mes', 'Mapoly0009s0186' => 'mpo', 'Mapoly0036s0118' => 'mpo', 'Mapoly0101s0046' => 'mpo', 'MBI04_g30218_MAGBIO' => 'mbi', 'MBI04_g35564_MAGBIO' => 'mbi', 'MBI12_g34011_MAGBIO' => 'mbi', 'MBI14_g04655_MAGBIO' => 'mbi', 'MCO07G653' => 'mco', 'MCO10G173' => 'mco', 'MD01G1087100' => 'mdo', 'MD01G1104200' => 'mdo', 'MD02G1205100' => 'mdo', 'MD04G1079200' => 'mdo', 'MD04G1131400' => 'mdo', 'MD07G1121600' => 'mdo', 'MD07G1157300' => 'mdo', 'MD07G1171000' => 'mdo', 'MD12G1144500' => 'mdo', 'Medtr1g094610' => 'mtr', 'Medtr4g021795' => 'mtr', 'Medtr4g023760' => 'mtr', 'Medtr7g118050' => 'mtr', 'MELO3C005582.2' => 'cme', 'MELO3C005989.2' => 'cme', 'MELO3C006192.2' => 'cme', 'MELO3C009248.2' => 'cme', 'MELO3C019817.2' => 'cme', 'Migut.B01625' => 'egut', 'Migut.B01915' => 'egut', 'Migut.F01721' => 'egut', 'Migut.J00314' => 'egut', 'MSTRG.20742' => 'ama', 'MSTRG.8134' => 'ama', 'Nitab4.5_0000096g0010' => 'nta', 'Nitab4.5_0000202g0030' => 'nta', 'Nitab4.5_0000216g0370' => 'nta', 'Nitab4.5_0000457g0230' => 'nta', 'Nitab4.5_0001702g0170' => 'nta', 'Nitab4.5_0003607g0010' => 'nta', 'Nitab4.5_0004917g0020' => 'nta', 'Nitab4.5_0007059g0010' => 'nta', 'Nitab4.5_0007184g0010' => 'nta', 'Nitab4.5_0007346g0020' => 'nta', 'Nn1g00410' => 'nnu', 'Nn1g01252' => 'nnu', 'Nn2g11168' => 'nnu', 'Nn2g13403' => 'nnu', 'Nn2g13760' => 'nnu', 'Nn4g26380' => 'nnu', 'Oeu000806.2' => 'oeu', 'Oeu005788.1' => 'oeu', 'Oeu006900.3' => 'oeu', 'Oeu007797.1' => 'oeu', 'Oeu011932.1' => 'oeu', 'Oeu022739.1' => 'oeu', 'Oeu037918.1' => 'oeu', 'Oeu055490.2' => 'oeu', 'Os01g0844400' => 'osa', 'Os02g0819100' => 'osa', 'Os03g0804300' => 'osa', 'Os05g0458000' => 'osa', 'Os07g0467800' => 'osa', 'Os12g0602200' => 'osa', 'Peaxi162Scf00013g03444' => 'pax', 'Peaxi162Scf00094g01120' => 'pax', 'Peaxi162Scf00191g01211' => 'pax', 'Peaxi162Scf00238g01110' => 'pax', 'Peaxi162Scf00330g00719' => 'pax', 'Peaxi162Scf00627g00018' => 'pax', 'PGR031G2686' => 'pgr', 'PGR042G0809' => 'pgr', 'PGR142G0193' => 'pgr', 'PGSC0003DMG400011066' => 'stu', 'PGSC0003DMG400012041' => 'stu', 'PGSC0003DMG400013678' => 'stu', 'PGSC0003DMG400023477' => 'stu', 'PGSC0003DMG400025956' => 'stu', 'PGSC0003DMG401019151' => 'stu', 'Phvul.006G116400' => 'pvu', 'Phvul.007G097300' => 'pvu', 'Phvul.010G015000' => 'pvu', 'Phvul.010G083900' => 'pvu', 'Potri.001G117100' => 'ptr', 'Potri.002G147300' => 'ptr', 'Potri.003G115600' => 'ptr', 'Potri.006G087400' => 'ptr', 'Potri.010G226100' => 'ptr', 'Potri.014G069200' => 'ptr', 'Potri.014G104000' => 'ptr', 'Potri.016G100200' => 'ptr', 'Pp3c10_20450' => 'ppa', 'Pp3c1_42400' => 'ppa', 'Pp3c3_24390' => 'ppa', 'Pp3c3_2860' => 'ppa', 'PRCOL_00003193' => 'pco', 'Prupe.2G144500' => 'ppe', 'Prupe.2G195700' => 'ppe', 'Prupe.2G209800' => 'ppe', 'Prupe.5G080000' => 'ppe', 'Prupe.6G257900' => 'ppe', 'Psat3g001160' => 'psa', 'Psat6g181880' => 'psa', 'Psat7g233720' => 'psa', 'PSO063G7587' => 'pso', 'PSO339G2145' => 'pso', 'PSO339G3369' => 'pso', 'PSO478G2747' => 'pso', 'PSO513G0140' => 'pso', 'PSO782G1614' => 'pso', 'PSO782G4889' => 'pso', 'PSO782G5485' => 'pso', 'PSO801G0241' => 'pso', 'QL07p048854' => 'qlo', 'QL08p046745' => 'qlo', 'QL08p052606' => 'qlo', 'QL08p053414' => 'qlo', 'QL08p054868' => 'qlo', 'RcHm_v2.0_Chr1g0350251' => 'rch', 'RcHm_v2.0_Chr1g0360851' => 'rch', 'RcHm_v2.0_Chr1g0362791' => 'rch', 'RcHm_v2.0_Chr3g0466281' => 'rch', 'RcHm_v2.0_Chr7g0201481' => 'rch', 'Rhsim01G0148600' => 'rsi', 'Rhsim05G0194400' => 'rsi', 'Rhsim07G0000700' => 'rsi', 'Rhsim07G0000800' => 'rsi', 'Rhsim07G0027900' => 'rsi', 'Rhsim09G0149500' => 'rsi', 'RhsimUnG0186900' => 'rsi', 'Sabra01G0089900' => 'sbr', 'Sabra02G0114700' => 'sbr', 'Sabra02G0116300' => 'sbr', 'Sabra03G0080100' => 'sbr', 'Sabra08G0024300' => 'sbr', 'Sabra10G0174300' => 'sbr', 'Sabra14G0048900' => 'sbr', 'Sabra14G0076500' => 'sbr', 'SalBow5G2513' => 'sbo', 'Sc01g0002300' => 'sci', 'Sc01g0004450' => 'sci', 'Sc06g0001680' => 'sci', 'Sc23g0003580' => 'sci', 'Sed0000913' => 'sed', 'Sed0001655' => 'sed', 'Sed0007745' => 'sed', 'Sed0010951' => 'sed', 'Sed0017599' => 'sed', 'Sed0021405' => 'sed', 'Sed0022810' => 'sed', 'SEGI_07099' => 'sgi', 'SEGI_11931' => 'sgi', 'SEGI_13187' => 'sgi', 'SEGI_29958' => 'sgi', 'SEGI_36351' => 'sgi', 'SGA_v2.0_scaffold126G33770' => 'sas', 'SGA_v2.0_scaffold153G37003' => 'sas', 'SGA_v2.0_scaffold2G01359' => 'sas', 'SGA_v2.0_scaffold5G03064' => 'sas', 'SGA_v2.0_scaffold95G28903' => 'sas', 'SHI12701' => 'shi', 'SHI26410' => 'shi', 'SHI38997' => 'shi', 'SHI53759' => 'shi', 'SHI53886' => 'shi', 'SHI54714' => 'shi', 'SMO011G0041' => 'smo', 'SMO146G0251' => 'smo', 'SMO160G0004' => 'smo', 'SMO174G0057' => 'smo', 'SMO244G0089' => 'smo', 'SMO296G0011' => 'smo', 'Solyc01g091280.3' => 'sly', 'Solyc05g047610.3' => 'sly', 'Solyc05g047640.3' => 'sly', 'Solyc05g055630.3' => 'sly', 'Solyc10g018160.2' => 'sly', 'Solyc10g084820.2' => 'sly', 'Solyc10g086565.2' => 'sly', 'Sopen01g037030' => 'spe', 'Sopen05g027920' => 'spe', 'Sopen05g034070' => 'spe', 'Sopen10g007260' => 'spe', 'Sopen10g034260' => 'spe', 'Sopen10g035950' => 'spe', 'Sp3g07710' => 'spa', 'Sp4g27420' => 'spa', 'Sp5g02450' => 'spa', 'Sp6g01280' => 'spa', 'Sp6g38480' => 'spa', 'Sp7g20780' => 'spa', 'TAR374G1413' => 'tar', 'TAR623G1777' => 'tar', 'TAR629G2370' => 'tar', 'TAR633G1759' => 'tar', 'TAR636G3387' => 'tar', 'THA.LOC104802447' => 'tha', 'THA.LOC104813916' => 'tha', 'THA.LOC104816423' => 'tha', 'THA.LOC104817246' => 'tha', 'THA.LOC104825895' => 'tha', 'Thecc.01G335200' => 'tca', 'Thecc.01G377400' => 'tca', 'Thecc.03G262200' => 'tca', 'Thecc.05G036800' => 'tca', 'Thecc.10G080500' => 'tca', 'Thecc.10G080800' => 'tca', 'Thhalv10001560m.g' => 'esa', 'Thhalv10006120m.g' => 'esa', 'Thhalv10014375m.g' => 'esa', 'Thhalv10021264m.g' => 'esa', 'Thhalv10028856m.g' => 'esa', 'TPR.G1914' => 'tpr', 'TPR.G4757' => 'tpr', 'TPR.G5595' => 'tpr', 'TWI14G0952' => 'twi', 'TWI14G1307' => 'twi', 'TWI38G2143' => 'twi', 'TWI59G0826' => 'twi', 'TWI77G0527' => 'twi', 'TWI81G0150' => 'twi', 'unitig_21.g21018' => 'ugi', 'unitig_26.g9725' => 'ugi', 'unitig_744.g24653' => 'ugi', 'unitig_749.g13778' => 'ugi', 'unitig_899.g15035' => 'ugi', 'vmacro04296' => 'vma', 'vmacro04852' => 'vma', 'vmacro13404' => 'vma', 'vmacro20169' => 'vma', 'vmacro21014' => 'vma', 'VMungo0331G0237' => 'vmu', 'VMungo0331G0706' => 'vmu', 'VMungo0331G1361' => 'vmu', 'VMungo0331G1489' => 'vmu', 'VMungo0540G1037' => 'vmu', 'VMungo0720G2487' => 'vmu', 'VMungo0720G2721' => 'vmu', 'Zm00001eb086860' => 'zma', 'Zm00001eb104760' => 'zma', 'Zm00001eb148220' => 'zma', 'Zm00001eb259030' => 'zma', 'Zm00001eb289590' => 'zma', 'Zm00001eb420150' => 'zma' ), 'gf_id' => 'HOM05D000968', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000968' ), 'data_identifier' => 'HOM05D000968', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000968', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p31690' => 'bna', 'A03p36040' => 'bna', 'A03p53730' => 'bna', 'A04p01410' => 'bna', 'A05p05420' => 'bna', 'A05p39630' => 'bna', 'A05p39640' => 'bna', 'A09p00970' => 'bna', 'A09p53060' => 'bna', 'A10p31890' => 'bna', 'Aa31LG10G15040' => 'aar', 'Aa31LG1G21090' => 'aar', 'Aa31LG1G26900' => 'aar', 'Aa31LG3G1820' => 'aar', 'Aa31LG5G1100' => 'aar', 'Aa31LG6G4740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2265' => 'aag', 'Actinidia07998' => 'ach', 'Actinidia11266' => 'ach', 'Actinidia12682' => 'ach', 'Actinidia26479' => 'ach', 'Actinidia31406' => 'ach', 'Actinidia32437' => 'ach', 'Actinidia38862' => 'ach', 'Ah.05g174230' => 'amhyb', 'Ah.05g179070' => 'amhyb', 'Ah.05g179090' => 'amhyb', 'Ah.12g059950' => 'amhyb', 'AL3G20480' => 'aly', 'AL4G44520' => 'aly', 'AL5G43110' => 'aly', 'AL6G13890' => 'aly', 'AL6G52620' => 'aly', 'AL7G30830' => 'aly', 'Aqoxy1G00899' => 'aox', 'Aqoxy5G04333' => 'aox', 'Aqoxy7G00641' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3IZ0NN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4EF6AW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W9P8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79GA3M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C43NQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFCU6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G95YVJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCHK29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LU1UG8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX91RN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGB4B1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8DA0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9H7JI' => 'arhy', 'AT3G09320' => 'ath', 'AT3G60800' => 'ath', 'AT4G00840' => 'ath', 'AT4G22750' => 'ath', 'AT5G04270' => 'ath', 'ATR0090G003' => 'atr', 'ATR0559G349' => 'atr', 'ATR0680G261' => 'atr', 'ATR0810G048' => 'atr', 'Atru.chr12.831' => 'acertr', 'Atru.chr5.303' => 'acertr', 'Atru.chr5.748' => 'acertr', 'Atru.chr8.1999' => 'acertr', 'Atru.chr9.1436' => 'acertr', 'AUR62004211' => 'cqu', 'AUR62004548' => 'cqu', 'AUR62013637' => 'cqu', 'AUR62022662' => 'cqu', 'AUR62025777' => 'cqu', 'AUR62042386' => 'cqu', 'BcaB01g02310' => 'bca', 'BcaB01g06062' => 'bca', 'BcaB02g08975' => 'bca', 'BcaB02g08980' => 'bca', 'BcaC01g04228' => 'bca', 'BcaC01g06830' => 'bca', 'BcaC02g10186' => 'bca', 'BcaC02g12214' => 'bca', 'BcaC04g24101' => 'bca', 'BcaC05g29520' => 'bca', 'BcaC05g29661' => 'bca', 'BcaC06g32130' => 'bca', 'BcaC06g32131' => 'bca', 'BcaC07g40601' => 'bca', 'BcaC07g42641' => 'bca', 'BcaNung01038' => 'bca', 'BcaNung01676' => 'bca', 'BcaNung02480' => 'bca', 'BcaNung07376' => 'bca', 'BolC3t16146H' => 'bol', 'BolC3t16637H' => 'bol', 'BolC4t22257H' => 'bol', 'BolC4t24728H' => 'bol', 'BolC5t34517H' => 'bol', 'BolC7t45703H' => 'bol', 'BolC8t51166H' => 'bol', 'BolC9t53038H' => 'bol', 'BolC9t60000H' => 'bol', 'BraA01t01345Z' => 'bra', 'BraA01t01346Z' => 'bra', 'BraA01t01348Z' => 'bra', 'BraA03t12347Z' => 'bra', 'BraA03t12775Z' => 'bra', 'BraA03t14439Z' => 'bra', 'BraA04t15860Z' => 'bra', 'BraA05t19511Z' => 'bra', 'BraA05t22746Z' => 'bra', 'BraA09t35767Z' => 'bra', 'BraA09t40732Z' => 'bra', 'BraA10t45233Z' => 'bra', 'C03p38720' => 'bna', 'C03p43680' => 'bna', 'C04p06350' => 'bna', 'C04p31800' => 'bna', 'C05p58680' => 'bna', 'C07p52110' => 'bna', 'C08p35760' => 'bna', 'C09p01050' => 'bna', 'C09p72600' => 'bna', 'CAN.G106.2' => 'can', 'CAN.G1482.1' => 'can', 'CAN.G324.12' => 'can', 'CAN.G388.20' => 'can', 'CAN.G412.7' => 'can', 'CAN.G694.32' => 'can', 'CAN.G92.12' => 'can', 'CANSAT11G2353' => 'cansat', 'CANSAT21G1398' => 'cansat', 'CANSAT56G2456' => 'cansat', 'CANSAT56G3031' => 'cansat', 'CANSAT56G4539' => 'cansat', 'CARHR083680' => 'chi', 'CARHR171190' => 'chi', 'CARHR209010' => 'chi', 'CARHR229680' => 'chi', 'CARHR249490' => 'chi', 'Carub.0003s0844' => 'cru', 'Carub.0005s2755' => 'cru', 'Carub.0006s0322' => 'cru', 'Carub.0006s3586' => 'cru', 'Carub.0007s1855' => 'cru', 'Ca_07808_v3' => 'car', 'Ca_09535_v3' => 'car', 'Ca_10548_v3' => 'car', 'Ca_19913_v3' => 'car', 'Ca_19916_v3' => 'car', 'Ca_19975_v3' => 'car', 'CBR_g22876' => 'cbr', 'CBR_g22879' => 'cbr', 'CBR_g38491' => 'cbr', 'CBR_g54185' => 'cbr', 'CBR_g54190' => 'cbr', 'Cc02_g11020' => 'ccan', 'Cc02_g23920' => 'ccan', 'Cc02_g39860' => 'ccan', 'Cc02_g39870' => 'ccan', 'Cc03_g06760' => 'ccan', 'Cc06_g02450' => 'ccan', 'Cc09_g09450' => 'ccan', 'CDE02G1959' => 'cde', 'CDE04G0600' => 'cde', 'CDE07G1996' => 'cde', 'CDE07G2078' => 'cde', 'CDE11G0611' => 'cde', 'Cfa001683' => 'cfa', 'Cfa001734' => 'cfa', 'Cfa001737' => 'cfa', 'Cfa003751' => 'cfa', 'Cfa012019' => 'cfa', 'Cfa017353' => 'cfa', 'Cfa017732' => 'cfa', 'Cfa022464' => 'cfa', 'Ciclev10012400m.g' => 'ccl', 'Ciclev10021242m.g' => 'ccl', 'Ciclev10021302m.g' => 'ccl', 'Ciclev10021463m.g' => 'ccl', 'Ciclev10032359m.g' => 'ccl', 'CiPaw.01G081000' => 'cil', 'CiPaw.01G262500' => 'cil', 'CiPaw.01G269800' => 'cil', 'CiPaw.02G168400' => 'cil', 'CiPaw.05G119500' => 'cil', 'CiPaw.11G147300' => 'cil', 'ClCG01G003630' => 'cla', 'ClCG05G000510' => 'cla', 'ClCG05G002300' => 'cla', 'ClCG08G007650' => 'cla', 'ClCG10G021250' => 'cla', 'COL.COLO4_06218' => 'col', 'COL.COLO4_12538' => 'col', 'COL.COLO4_14775' => 'col', 'COL.COLO4_23875' => 'col', 'Cpa.g.sc141.16' => 'cpa', 'Cpa.g.sc169.16' => 'cpa', 'Cpa.g.sc244.4' => 'cpa', 'Cpa.g.sc244.5' => 'cpa', 'Cpa.g.sc29.87' => 'cpa', 'Cpa.g.sc53.115' => 'cpa', 'Cre03.g207502' => 'cre', 'Cre06.g277000' => 'cre', 'Cre09.g394050' => 'cre', 'CsaV3_3G007680' => 'csa', 'CsaV3_3G009710' => 'csa', 'CsaV3_3G034790' => 'csa', 'CsaV3_5G003750' => 'csa', 'CsaV3_6G036620' => 'csa', 'CSS0002288' => 'camsi', 'CSS0011250' => 'camsi', 'CSS0021619' => 'camsi', 'CSS0046701' => 'camsi', 'DCAR_006420' => 'dca', 'DCAR_006865' => 'dca', 'DCAR_008558' => 'dca', 'DCAR_028754' => 'dca', 'DCAR_028755' => 'dca', 'Dinv31218' => 'din', 'Dinv32371' => 'din', 'Dinv34250' => 'din', 'Dinv37156' => 'din', 'Dinv43704' => 'din', 'Duzib093G1811' => 'dzi', 'Duzib106G1622' => 'dzi', 'Duzib114G0504' => 'dzi', 'Duzib128G0338' => 'dzi', 'Duzib128G1577' => 'dzi', 'Duzib133G0104' => 'dzi', 'Duzib133G1080' => 'dzi', 'Duzib138G0324' => 'dzi', 'Duzib138G0394' => 'dzi', 'Duzib205G0122' => 'dzi', 'Duzib268G1020' => 'dzi', 'Duzib268G1359' => 'dzi', 'ECA232G3929' => 'eca', 'ECA236G2210' => 'eca', 'ECA236G2287' => 'eca', 'ECA240G4568' => 'eca', 'ECA247G0894' => 'eca', 'EL10Ac1g00200' => 'bvu', 'EL10Ac1g00886' => 'bvu', 'EL10As1g23091' => 'bvu', 'EL10As1g23092' => 'bvu', 'Eucgr.A01284' => 'egr', 'Eucgr.A01285' => 'egr', 'Eucgr.D02456' => 'egr', 'Eucgr.E00018' => 'egr', 'Eucgr.E01439' => 'egr', 'Eucgr.G02859' => 'egr', 'FAN01G0168' => 'fan', 'FAN01G0453' => 'fan', 'FAN01G2761' => 'fan', 'FAN02G1239' => 'fan', 'FAN03G0645' => 'fan', 'FAN03G2707' => 'fan', 'FAN03G2978' => 'fan', 'FAN04G0227' => 'fan', 'FAN06G0091' => 'fan', 'FAN06G1418' => 'fan', 'FAN06G1512' => 'fan', 'FAN06G1986' => 'fan', 'FAN06G2905' => 'fan', 'FAN06G4325' => 'fan', 'FAN08G0033' => 'fan', 'FAN09G0642' => 'fan', 'FAN10G1763' => 'fan', 'FAN10G2026' => 'fan', 'FAN10G2513' => 'fan', 'FAN10G3402' => 'fan', 'FAN10G3564' => 'fan', 'FAN10G3987' => 'fan', 'FAN13G1490' => 'fan', 'FAN14G5857' => 'fan', 'FAN18G1188' => 'fan', 'FvH4_5g00750' => 'fve', 'FvH4_6g13410' => 'fve', 'FvH4_7g11740' => 'fve', 'FvH4_7g17410' => 'fve', 'FvH4_7g18860' => 'fve', 'Glyma.01G099100' => 'gma', 'Glyma.01G142300' => 'gma', 'Glyma.03G025500' => 'gma', 'Glyma.03G069700' => 'gma', 'Glyma.03G260000' => 'gma', 'Glyma.09G269800' => 'gma', 'Glyma.10G208700' => 'gma', 'Glyma.18G220400' => 'gma', 'Glyma.20G182000' => 'gma', 'Gohir.A01G221726' => 'ghi', 'Gohir.A07G134600' => 'ghi', 'Gohir.A07G146000' => 'ghi', 'Gohir.A08G173900' => 'ghi', 'Gohir.A09G194900' => 'ghi', 'Gohir.A10G204100' => 'ghi', 'Gohir.A11G080600' => 'ghi', 'Gohir.A11G327500' => 'ghi', 'Gohir.A12G101800' => 'ghi', 'Gohir.D01G211200' => 'ghi', 'Gohir.D07G139200' => 'ghi', 'Gohir.D07G152100' => 'ghi', 'Gohir.D08G192600' => 'ghi', 'Gohir.D09G189200' => 'ghi', 'Gohir.D10G212000' => 'ghi', 'Gohir.D11G085200' => 'ghi', 'Gohir.D11G346400' => 'ghi', 'Gohir.D12G104800' => 'ghi', 'Gorai.001G151300' => 'gra', 'Gorai.001G174100' => 'gra', 'Gorai.002G257000' => 'gra', 'Gorai.004G202600' => 'gra', 'Gorai.007G090900' => 'gra', 'Gorai.007G376700' => 'gra', 'Gorai.008G114100' => 'gra', 'Gorai.011G237900' => 'gra', 'GSVIVG01005450001' => 'vvi', 'GSVIVG01016232001' => 'vvi', 'GSVIVG01026157001' => 'vvi', 'GSVIVG01027419001' => 'vvi', 'GSVIVG01027631001' => 'vvi', 'GSVIVG01034143001' => 'vvi', 'HanXRQChr03g0093921' => 'han', 'HanXRQChr04g0120001' => 'han', 'HanXRQChr04g0122561' => 'han', 'HanXRQChr09g0246851' => 'han', 'HanXRQChr10g0293311' => 'han', 'HanXRQChr13g0425231' => 'han', 'HanXRQChr16g0532571' => 'han', 'Haze_09050' => 'cav', 'Haze_15715' => 'cav', 'Haze_15716' => 'cav', 'Haze_16803' => 'cav', 'Haze_16850' => 'cav', 'Hma1.2p1_0301F.1_g118655' => 'hma', 'Hma1.2p1_0309F.1_g120590' => 'hma', 'Hma1.2p1_0936F.1_g238900' => 'hma', 'Hma1.2p1_3552F.1_g336740' => 'hma', 'HPP92_003520' => 'vpl', 'HPP92_006628' => 'vpl', 'HPP92_006645' => 'vpl', 'HPP92_014669' => 'vpl', 'HPP92_015077' => 'vpl', 'Hund16742' => 'sun', 'Hund17022' => 'sun', 'Lalb_Chr02g0152131' => 'lal', 'Lalb_Chr05g0225371' => 'lal', 'Lalb_Chr07g0189841' => 'lal', 'Lalb_Chr07g0192961' => 'lal', 'Lalb_Chr12g0208221' => 'lal', 'Lalb_Chr13g0291211' => 'lal', 'Lalb_Chr13g0291781' => 'lal', 'Lalb_Chr18g0044651' => 'lal', 'Lalb_Chr21g0313731' => 'lal', 'Lj1g0022533' => 'lja', 'Lj2A18T50' => 'lonja', 'Lj2A92G93' => 'lonja', 'Lj3A965T73' => 'lonja', 'Lj3g0000673' => 'lja', 'Lj3g0002666' => 'lja', 'Lj4g0016985' => 'lja', 'Lj5g0003625' => 'lja', 'Lj7A529G36' => 'lonja', 'Lj9A569T49' => 'lonja', 'Lj9A604T63' => 'lonja', 'Lsat_1_v5_gn_3_132060' => 'lsa', 'Lsat_1_v5_gn_4_68941' => 'lsa', 'Lsat_1_v5_gn_5_95580' => 'lsa', 'Lsat_1_v5_gn_7_161' => 'lsa', 'Lsat_1_v5_gn_7_7041' => 'lsa', 'Lsat_1_v5_gn_9_33481' => 'lsa', 'Lsat_1_v5_gn_9_68260' => 'lsa', 'Manes.01G073100' => 'mes', 'Manes.01G266300' => 'mes', 'Manes.02G033300' => 'mes', 'Manes.05G017900' => 'mes', 'Manes.05G046100' => 'mes', 'Manes.08G080900' => 'mes', 'Manes.10G049400' => 'mes', 'Mapoly0009s0186' => 'mpo', 'Mapoly0036s0118' => 'mpo', 'Mapoly0101s0046' => 'mpo', 'MBI04_g30218_MAGBIO' => 'mbi', 'MBI04_g35564_MAGBIO' => 'mbi', 'MBI12_g34011_MAGBIO' => 'mbi', 'MBI14_g04655_MAGBIO' => 'mbi', 'MCO07G653' => 'mco', 'MCO10G173' => 'mco', 'MD01G1087100' => 'mdo', 'MD01G1104200' => 'mdo', 'MD02G1205100' => 'mdo', 'MD04G1079200' => 'mdo', 'MD04G1131400' => 'mdo', 'MD07G1121600' => 'mdo', 'MD07G1157300' => 'mdo', 'MD07G1171000' => 'mdo', 'MD12G1144500' => 'mdo', 'Medtr1g094610' => 'mtr', 'Medtr4g021795' => 'mtr', 'Medtr4g023760' => 'mtr', 'Medtr7g118050' => 'mtr', 'MELO3C005582.2' => 'cme', 'MELO3C005989.2' => 'cme', 'MELO3C006192.2' => 'cme', 'MELO3C009248.2' => 'cme', 'MELO3C019817.2' => 'cme', 'Migut.B01625' => 'egut', 'Migut.B01915' => 'egut', 'Migut.F01721' => 'egut', 'Migut.J00314' => 'egut', 'MSTRG.20742' => 'ama', 'MSTRG.8134' => 'ama', 'Nitab4.5_0000096g0010' => 'nta', 'Nitab4.5_0000202g0030' => 'nta', 'Nitab4.5_0000216g0370' => 'nta', 'Nitab4.5_0000457g0230' => 'nta', 'Nitab4.5_0001702g0170' => 'nta', 'Nitab4.5_0003607g0010' => 'nta', 'Nitab4.5_0004917g0020' => 'nta', 'Nitab4.5_0007059g0010' => 'nta', 'Nitab4.5_0007184g0010' => 'nta', 'Nitab4.5_0007346g0020' => 'nta', 'Nn1g00410' => 'nnu', 'Nn1g01252' => 'nnu', 'Nn2g11168' => 'nnu', 'Nn2g13403' => 'nnu', 'Nn2g13760' => 'nnu', 'Nn4g26380' => 'nnu', 'Oeu000806.2' => 'oeu', 'Oeu005788.1' => 'oeu', 'Oeu006900.3' => 'oeu', 'Oeu007797.1' => 'oeu', 'Oeu011932.1' => 'oeu', 'Oeu022739.1' => 'oeu', 'Oeu037918.1' => 'oeu', 'Oeu055490.2' => 'oeu', 'Os01g0844400' => 'osa', 'Os02g0819100' => 'osa', 'Os03g0804300' => 'osa', 'Os05g0458000' => 'osa', 'Os07g0467800' => 'osa', 'Os12g0602200' => 'osa', 'Peaxi162Scf00013g03444' => 'pax', 'Peaxi162Scf00094g01120' => 'pax', 'Peaxi162Scf00191g01211' => 'pax', 'Peaxi162Scf00238g01110' => 'pax', 'Peaxi162Scf00330g00719' => 'pax', 'Peaxi162Scf00627g00018' => 'pax', 'PGR031G2686' => 'pgr', 'PGR042G0809' => 'pgr', 'PGR142G0193' => 'pgr', 'PGSC0003DMG400011066' => 'stu', 'PGSC0003DMG400012041' => 'stu', 'PGSC0003DMG400013678' => 'stu', 'PGSC0003DMG400023477' => 'stu', 'PGSC0003DMG400025956' => 'stu', 'PGSC0003DMG401019151' => 'stu', 'Phvul.006G116400' => 'pvu', 'Phvul.007G097300' => 'pvu', 'Phvul.010G015000' => 'pvu', 'Phvul.010G083900' => 'pvu', 'Potri.001G117100' => 'ptr', 'Potri.002G147300' => 'ptr', 'Potri.003G115600' => 'ptr', 'Potri.006G087400' => 'ptr', 'Potri.010G226100' => 'ptr', 'Potri.014G069200' => 'ptr', 'Potri.014G104000' => 'ptr', 'Potri.016G100200' => 'ptr', 'Pp3c10_20450' => 'ppa', 'Pp3c1_42400' => 'ppa', 'Pp3c3_24390' => 'ppa', 'Pp3c3_2860' => 'ppa', 'PRCOL_00003193' => 'pco', 'Prupe.2G144500' => 'ppe', 'Prupe.2G195700' => 'ppe', 'Prupe.2G209800' => 'ppe', 'Prupe.5G080000' => 'ppe', 'Prupe.6G257900' => 'ppe', 'Psat3g001160' => 'psa', 'Psat6g181880' => 'psa', 'Psat7g233720' => 'psa', 'PSO063G7587' => 'pso', 'PSO339G2145' => 'pso', 'PSO339G3369' => 'pso', 'PSO478G2747' => 'pso', 'PSO513G0140' => 'pso', 'PSO782G1614' => 'pso', 'PSO782G4889' => 'pso', 'PSO782G5485' => 'pso', 'PSO801G0241' => 'pso', 'QL07p048854' => 'qlo', 'QL08p046745' => 'qlo', 'QL08p052606' => 'qlo', 'QL08p053414' => 'qlo', 'QL08p054868' => 'qlo', 'RcHm_v2.0_Chr1g0350251' => 'rch', 'RcHm_v2.0_Chr1g0360851' => 'rch', 'RcHm_v2.0_Chr1g0362791' => 'rch', 'RcHm_v2.0_Chr3g0466281' => 'rch', 'RcHm_v2.0_Chr7g0201481' => 'rch', 'Rhsim01G0148600' => 'rsi', 'Rhsim05G0194400' => 'rsi', 'Rhsim07G0000700' => 'rsi', 'Rhsim07G0000800' => 'rsi', 'Rhsim07G0027900' => 'rsi', 'Rhsim09G0149500' => 'rsi', 'RhsimUnG0186900' => 'rsi', 'Sabra01G0089900' => 'sbr', 'Sabra02G0114700' => 'sbr', 'Sabra02G0116300' => 'sbr', 'Sabra03G0080100' => 'sbr', 'Sabra08G0024300' => 'sbr', 'Sabra10G0174300' => 'sbr', 'Sabra14G0048900' => 'sbr', 'Sabra14G0076500' => 'sbr', 'SalBow5G2513' => 'sbo', 'Sc01g0002300' => 'sci', 'Sc01g0004450' => 'sci', 'Sc06g0001680' => 'sci', 'Sc23g0003580' => 'sci', 'Sed0000913' => 'sed', 'Sed0001655' => 'sed', 'Sed0007745' => 'sed', 'Sed0010951' => 'sed', 'Sed0017599' => 'sed', 'Sed0021405' => 'sed', 'Sed0022810' => 'sed', 'SEGI_07099' => 'sgi', 'SEGI_11931' => 'sgi', 'SEGI_13187' => 'sgi', 'SEGI_29958' => 'sgi', 'SEGI_36351' => 'sgi', 'SGA_v2.0_scaffold126G33770' => 'sas', 'SGA_v2.0_scaffold153G37003' => 'sas', 'SGA_v2.0_scaffold2G01359' => 'sas', 'SGA_v2.0_scaffold5G03064' => 'sas', 'SGA_v2.0_scaffold95G28903' => 'sas', 'SHI12701' => 'shi', 'SHI26410' => 'shi', 'SHI38997' => 'shi', 'SHI53759' => 'shi', 'SHI53886' => 'shi', 'SHI54714' => 'shi', 'SMO011G0041' => 'smo', 'SMO146G0251' => 'smo', 'SMO160G0004' => 'smo', 'SMO174G0057' => 'smo', 'SMO244G0089' => 'smo', 'SMO296G0011' => 'smo', 'Solyc01g091280.3' => 'sly', 'Solyc05g047610.3' => 'sly', 'Solyc05g047640.3' => 'sly', 'Solyc05g055630.3' => 'sly', 'Solyc10g018160.2' => 'sly', 'Solyc10g084820.2' => 'sly', 'Solyc10g086565.2' => 'sly', 'Sopen01g037030' => 'spe', 'Sopen05g027920' => 'spe', 'Sopen05g034070' => 'spe', 'Sopen10g007260' => 'spe', 'Sopen10g034260' => 'spe', 'Sopen10g035950' => 'spe', 'Sp3g07710' => 'spa', 'Sp4g27420' => 'spa', 'Sp5g02450' => 'spa', 'Sp6g01280' => 'spa', 'Sp6g38480' => 'spa', 'Sp7g20780' => 'spa', 'TAR374G1413' => 'tar', 'TAR623G1777' => 'tar', 'TAR629G2370' => 'tar', 'TAR633G1759' => 'tar', 'TAR636G3387' => 'tar', 'THA.LOC104802447' => 'tha', 'THA.LOC104813916' => 'tha', 'THA.LOC104816423' => 'tha', 'THA.LOC104817246' => 'tha', 'THA.LOC104825895' => 'tha', 'Thecc.01G335200' => 'tca', 'Thecc.01G377400' => 'tca', 'Thecc.03G262200' => 'tca', 'Thecc.05G036800' => 'tca', 'Thecc.10G080500' => 'tca', 'Thecc.10G080800' => 'tca', 'Thhalv10001560m.g' => 'esa', 'Thhalv10006120m.g' => 'esa', 'Thhalv10014375m.g' => 'esa', 'Thhalv10021264m.g' => 'esa', 'Thhalv10028856m.g' => 'esa', 'TPR.G1914' => 'tpr', 'TPR.G4757' => 'tpr', 'TPR.G5595' => 'tpr', 'TWI14G0952' => 'twi', 'TWI14G1307' => 'twi', 'TWI38G2143' => 'twi', 'TWI59G0826' => 'twi', 'TWI77G0527' => 'twi', 'TWI81G0150' => 'twi', 'unitig_21.g21018' => 'ugi', 'unitig_26.g9725' => 'ugi', 'unitig_744.g24653' => 'ugi', 'unitig_749.g13778' => 'ugi', 'unitig_899.g15035' => 'ugi', 'vmacro04296' => 'vma', 'vmacro04852' => 'vma', 'vmacro13404' => 'vma', 'vmacro20169' => 'vma', 'vmacro21014' => 'vma', 'VMungo0331G0237' => 'vmu', 'VMungo0331G0706' => 'vmu', 'VMungo0331G1361' => 'vmu', 'VMungo0331G1489' => 'vmu', 'VMungo0540G1037' => 'vmu', 'VMungo0720G2487' => 'vmu', 'VMungo0720G2721' => 'vmu', 'Zm00001eb086860' => 'zma', 'Zm00001eb104760' => 'zma', 'Zm00001eb148220' => 'zma', 'Zm00001eb259030' => 'zma', 'Zm00001eb289590' => 'zma', 'Zm00001eb420150' => 'zma' ) $gf_id = 'HOM05D000968' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000968' ) $data_identifier = 'HOM05D000968' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 19, 'bol' => (int) 9, 'bra' => (int) 12, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 5, 'ccan' => (int) 7, 'cde' => (int) 5, 'cfa' => (int) 8, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 4, 'dca' => (int) 5, 'din' => (int) 5, 'dzi' => (int) 12, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 25, 'fve' => (int) 5, 'gma' => (int) 9, 'ghi' => (int) 18, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 7, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 5, 'sun' => (int) 2, 'lal' => (int) 9, 'lja' => (int) 5, 'lonja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 9, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 2, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 3, 'stu' => (int) 6, 'pvu' => (int) 4, 'ptr' => (int) 8, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 3, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 1, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 5, 'sas' => (int) 5, 'shi' => (int) 6, 'smo' => (int) 6, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 3, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420150' $species_info = array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ) $local_species = 'ach' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000968', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p31690' => 'bna', 'A03p36040' => 'bna', 'A03p53730' => 'bna', 'A04p01410' => 'bna', 'A05p05420' => 'bna', 'A05p39630' => 'bna', 'A05p39640' => 'bna', 'A09p00970' => 'bna', 'A09p53060' => 'bna', 'A10p31890' => 'bna', 'Aa31LG10G15040' => 'aar', 'Aa31LG1G21090' => 'aar', 'Aa31LG1G26900' => 'aar', 'Aa31LG3G1820' => 'aar', 'Aa31LG5G1100' => 'aar', 'Aa31LG6G4740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2265' => 'aag', 'Actinidia07998' => 'ach', 'Actinidia11266' => 'ach', 'Actinidia12682' => 'ach', 'Actinidia26479' => 'ach', 'Actinidia31406' => 'ach', 'Actinidia32437' => 'ach', 'Actinidia38862' => 'ach', 'Ah.05g174230' => 'amhyb', 'Ah.05g179070' => 'amhyb', 'Ah.05g179090' => 'amhyb', 'Ah.12g059950' => 'amhyb', 'AL3G20480' => 'aly', 'AL4G44520' => 'aly', 'AL5G43110' => 'aly', 'AL6G13890' => 'aly', 'AL6G52620' => 'aly', 'AL7G30830' => 'aly', 'Aqoxy1G00899' => 'aox', 'Aqoxy5G04333' => 'aox', 'Aqoxy7G00641' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3IZ0NN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4EF6AW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W9P8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79GA3M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C43NQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFCU6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G95YVJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCHK29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LU1UG8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX91RN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGB4B1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8DA0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9H7JI' => 'arhy', 'AT3G09320' => 'ath', 'AT3G60800' => 'ath', 'AT4G00840' => 'ath', 'AT4G22750' => 'ath', 'AT5G04270' => 'ath', 'ATR0090G003' => 'atr', 'ATR0559G349' => 'atr', 'ATR0680G261' => 'atr', 'ATR0810G048' => 'atr', 'Atru.chr12.831' => 'acertr', 'Atru.chr5.303' => 'acertr', 'Atru.chr5.748' => 'acertr', 'Atru.chr8.1999' => 'acertr', 'Atru.chr9.1436' => 'acertr', 'AUR62004211' => 'cqu', 'AUR62004548' => 'cqu', 'AUR62013637' => 'cqu', 'AUR62022662' => 'cqu', 'AUR62025777' => 'cqu', 'AUR62042386' => 'cqu', 'BcaB01g02310' => 'bca', 'BcaB01g06062' => 'bca', 'BcaB02g08975' => 'bca', 'BcaB02g08980' => 'bca', 'BcaC01g04228' => 'bca', 'BcaC01g06830' => 'bca', 'BcaC02g10186' => 'bca', 'BcaC02g12214' => 'bca', 'BcaC04g24101' => 'bca', 'BcaC05g29520' => 'bca', 'BcaC05g29661' => 'bca', 'BcaC06g32130' => 'bca', 'BcaC06g32131' => 'bca', 'BcaC07g40601' => 'bca', 'BcaC07g42641' => 'bca', 'BcaNung01038' => 'bca', 'BcaNung01676' => 'bca', 'BcaNung02480' => 'bca', 'BcaNung07376' => 'bca', 'BolC3t16146H' => 'bol', 'BolC3t16637H' => 'bol', 'BolC4t22257H' => 'bol', 'BolC4t24728H' => 'bol', 'BolC5t34517H' => 'bol', 'BolC7t45703H' => 'bol', 'BolC8t51166H' => 'bol', 'BolC9t53038H' => 'bol', 'BolC9t60000H' => 'bol', 'BraA01t01345Z' => 'bra', 'BraA01t01346Z' => 'bra', 'BraA01t01348Z' => 'bra', 'BraA03t12347Z' => 'bra', 'BraA03t12775Z' => 'bra', 'BraA03t14439Z' => 'bra', 'BraA04t15860Z' => 'bra', 'BraA05t19511Z' => 'bra', 'BraA05t22746Z' => 'bra', 'BraA09t35767Z' => 'bra', 'BraA09t40732Z' => 'bra', 'BraA10t45233Z' => 'bra', 'C03p38720' => 'bna', 'C03p43680' => 'bna', 'C04p06350' => 'bna', 'C04p31800' => 'bna', 'C05p58680' => 'bna', 'C07p52110' => 'bna', 'C08p35760' => 'bna', 'C09p01050' => 'bna', 'C09p72600' => 'bna', 'CAN.G106.2' => 'can', 'CAN.G1482.1' => 'can', 'CAN.G324.12' => 'can', 'CAN.G388.20' => 'can', 'CAN.G412.7' => 'can', 'CAN.G694.32' => 'can', 'CAN.G92.12' => 'can', 'CANSAT11G2353' => 'cansat', 'CANSAT21G1398' => 'cansat', 'CANSAT56G2456' => 'cansat', 'CANSAT56G3031' => 'cansat', 'CANSAT56G4539' => 'cansat', 'CARHR083680' => 'chi', 'CARHR171190' => 'chi', 'CARHR209010' => 'chi', 'CARHR229680' => 'chi', 'CARHR249490' => 'chi', 'Carub.0003s0844' => 'cru', 'Carub.0005s2755' => 'cru', 'Carub.0006s0322' => 'cru', 'Carub.0006s3586' => 'cru', 'Carub.0007s1855' => 'cru', 'Ca_07808_v3' => 'car', 'Ca_09535_v3' => 'car', 'Ca_10548_v3' => 'car', 'Ca_19913_v3' => 'car', 'Ca_19916_v3' => 'car', 'Ca_19975_v3' => 'car', 'CBR_g22876' => 'cbr', 'CBR_g22879' => 'cbr', 'CBR_g38491' => 'cbr', 'CBR_g54185' => 'cbr', 'CBR_g54190' => 'cbr', 'Cc02_g11020' => 'ccan', 'Cc02_g23920' => 'ccan', 'Cc02_g39860' => 'ccan', 'Cc02_g39870' => 'ccan', 'Cc03_g06760' => 'ccan', 'Cc06_g02450' => 'ccan', 'Cc09_g09450' => 'ccan', 'CDE02G1959' => 'cde', 'CDE04G0600' => 'cde', 'CDE07G1996' => 'cde', 'CDE07G2078' => 'cde', 'CDE11G0611' => 'cde', 'Cfa001683' => 'cfa', 'Cfa001734' => 'cfa', 'Cfa001737' => 'cfa', 'Cfa003751' => 'cfa', 'Cfa012019' => 'cfa', 'Cfa017353' => 'cfa', 'Cfa017732' => 'cfa', 'Cfa022464' => 'cfa', 'Ciclev10012400m.g' => 'ccl', 'Ciclev10021242m.g' => 'ccl', 'Ciclev10021302m.g' => 'ccl', 'Ciclev10021463m.g' => 'ccl', 'Ciclev10032359m.g' => 'ccl', 'CiPaw.01G081000' => 'cil', 'CiPaw.01G262500' => 'cil', 'CiPaw.01G269800' => 'cil', 'CiPaw.02G168400' => 'cil', 'CiPaw.05G119500' => 'cil', 'CiPaw.11G147300' => 'cil', 'ClCG01G003630' => 'cla', 'ClCG05G000510' => 'cla', 'ClCG05G002300' => 'cla', 'ClCG08G007650' => 'cla', 'ClCG10G021250' => 'cla', 'COL.COLO4_06218' => 'col', 'COL.COLO4_12538' => 'col', 'COL.COLO4_14775' => 'col', 'COL.COLO4_23875' => 'col', 'Cpa.g.sc141.16' => 'cpa', 'Cpa.g.sc169.16' => 'cpa', 'Cpa.g.sc244.4' => 'cpa', 'Cpa.g.sc244.5' => 'cpa', 'Cpa.g.sc29.87' => 'cpa', 'Cpa.g.sc53.115' => 'cpa', 'Cre03.g207502' => 'cre', 'Cre06.g277000' => 'cre', 'Cre09.g394050' => 'cre', 'CsaV3_3G007680' => 'csa', 'CsaV3_3G009710' => 'csa', 'CsaV3_3G034790' => 'csa', 'CsaV3_5G003750' => 'csa', 'CsaV3_6G036620' => 'csa', 'CSS0002288' => 'camsi', 'CSS0011250' => 'camsi', 'CSS0021619' => 'camsi', 'CSS0046701' => 'camsi', 'DCAR_006420' => 'dca', 'DCAR_006865' => 'dca', 'DCAR_008558' => 'dca', 'DCAR_028754' => 'dca', 'DCAR_028755' => 'dca', 'Dinv31218' => 'din', 'Dinv32371' => 'din', 'Dinv34250' => 'din', 'Dinv37156' => 'din', 'Dinv43704' => 'din', 'Duzib093G1811' => 'dzi', 'Duzib106G1622' => 'dzi', 'Duzib114G0504' => 'dzi', 'Duzib128G0338' => 'dzi', 'Duzib128G1577' => 'dzi', 'Duzib133G0104' => 'dzi', 'Duzib133G1080' => 'dzi', 'Duzib138G0324' => 'dzi', 'Duzib138G0394' => 'dzi', 'Duzib205G0122' => 'dzi', 'Duzib268G1020' => 'dzi', 'Duzib268G1359' => 'dzi', 'ECA232G3929' => 'eca', 'ECA236G2210' => 'eca', 'ECA236G2287' => 'eca', 'ECA240G4568' => 'eca', 'ECA247G0894' => 'eca', 'EL10Ac1g00200' => 'bvu', 'EL10Ac1g00886' => 'bvu', 'EL10As1g23091' => 'bvu', 'EL10As1g23092' => 'bvu', 'Eucgr.A01284' => 'egr', 'Eucgr.A01285' => 'egr', 'Eucgr.D02456' => 'egr', 'Eucgr.E00018' => 'egr', 'Eucgr.E01439' => 'egr', 'Eucgr.G02859' => 'egr', 'FAN01G0168' => 'fan', 'FAN01G0453' => 'fan', 'FAN01G2761' => 'fan', 'FAN02G1239' => 'fan', 'FAN03G0645' => 'fan', 'FAN03G2707' => 'fan', 'FAN03G2978' => 'fan', 'FAN04G0227' => 'fan', 'FAN06G0091' => 'fan', 'FAN06G1418' => 'fan', 'FAN06G1512' => 'fan', 'FAN06G1986' => 'fan', 'FAN06G2905' => 'fan', 'FAN06G4325' => 'fan', 'FAN08G0033' => 'fan', 'FAN09G0642' => 'fan', 'FAN10G1763' => 'fan', 'FAN10G2026' => 'fan', 'FAN10G2513' => 'fan', 'FAN10G3402' => 'fan', 'FAN10G3564' => 'fan', 'FAN10G3987' => 'fan', 'FAN13G1490' => 'fan', 'FAN14G5857' => 'fan', 'FAN18G1188' => 'fan', 'FvH4_5g00750' => 'fve', 'FvH4_6g13410' => 'fve', 'FvH4_7g11740' => 'fve', 'FvH4_7g17410' => 'fve', 'FvH4_7g18860' => 'fve', 'Glyma.01G099100' => 'gma', 'Glyma.01G142300' => 'gma', 'Glyma.03G025500' => 'gma', 'Glyma.03G069700' => 'gma', 'Glyma.03G260000' => 'gma', 'Glyma.09G269800' => 'gma', 'Glyma.10G208700' => 'gma', 'Glyma.18G220400' => 'gma', 'Glyma.20G182000' => 'gma', 'Gohir.A01G221726' => 'ghi', 'Gohir.A07G134600' => 'ghi', 'Gohir.A07G146000' => 'ghi', 'Gohir.A08G173900' => 'ghi', 'Gohir.A09G194900' => 'ghi', 'Gohir.A10G204100' => 'ghi', 'Gohir.A11G080600' => 'ghi', 'Gohir.A11G327500' => 'ghi', 'Gohir.A12G101800' => 'ghi', 'Gohir.D01G211200' => 'ghi', 'Gohir.D07G139200' => 'ghi', 'Gohir.D07G152100' => 'ghi', 'Gohir.D08G192600' => 'ghi', 'Gohir.D09G189200' => 'ghi', 'Gohir.D10G212000' => 'ghi', 'Gohir.D11G085200' => 'ghi', 'Gohir.D11G346400' => 'ghi', 'Gohir.D12G104800' => 'ghi', 'Gorai.001G151300' => 'gra', 'Gorai.001G174100' => 'gra', 'Gorai.002G257000' => 'gra', 'Gorai.004G202600' => 'gra', 'Gorai.007G090900' => 'gra', 'Gorai.007G376700' => 'gra', 'Gorai.008G114100' => 'gra', 'Gorai.011G237900' => 'gra', 'GSVIVG01005450001' => 'vvi', 'GSVIVG01016232001' => 'vvi', 'GSVIVG01026157001' => 'vvi', 'GSVIVG01027419001' => 'vvi', 'GSVIVG01027631001' => 'vvi', 'GSVIVG01034143001' => 'vvi', 'HanXRQChr03g0093921' => 'han', 'HanXRQChr04g0120001' => 'han', 'HanXRQChr04g0122561' => 'han', 'HanXRQChr09g0246851' => 'han', 'HanXRQChr10g0293311' => 'han', 'HanXRQChr13g0425231' => 'han', 'HanXRQChr16g0532571' => 'han', 'Haze_09050' => 'cav', 'Haze_15715' => 'cav', 'Haze_15716' => 'cav', 'Haze_16803' => 'cav', 'Haze_16850' => 'cav', 'Hma1.2p1_0301F.1_g118655' => 'hma', 'Hma1.2p1_0309F.1_g120590' => 'hma', 'Hma1.2p1_0936F.1_g238900' => 'hma', 'Hma1.2p1_3552F.1_g336740' => 'hma', 'HPP92_003520' => 'vpl', 'HPP92_006628' => 'vpl', 'HPP92_006645' => 'vpl', 'HPP92_014669' => 'vpl', 'HPP92_015077' => 'vpl', 'Hund16742' => 'sun', 'Hund17022' => 'sun', 'Lalb_Chr02g0152131' => 'lal', 'Lalb_Chr05g0225371' => 'lal', 'Lalb_Chr07g0189841' => 'lal', 'Lalb_Chr07g0192961' => 'lal', 'Lalb_Chr12g0208221' => 'lal', 'Lalb_Chr13g0291211' => 'lal', 'Lalb_Chr13g0291781' => 'lal', 'Lalb_Chr18g0044651' => 'lal', 'Lalb_Chr21g0313731' => 'lal', 'Lj1g0022533' => 'lja', 'Lj2A18T50' => 'lonja', 'Lj2A92G93' => 'lonja', 'Lj3A965T73' => 'lonja', 'Lj3g0000673' => 'lja', 'Lj3g0002666' => 'lja', 'Lj4g0016985' => 'lja', 'Lj5g0003625' => 'lja', 'Lj7A529G36' => 'lonja', 'Lj9A569T49' => 'lonja', 'Lj9A604T63' => 'lonja', 'Lsat_1_v5_gn_3_132060' => 'lsa', 'Lsat_1_v5_gn_4_68941' => 'lsa', 'Lsat_1_v5_gn_5_95580' => 'lsa', 'Lsat_1_v5_gn_7_161' => 'lsa', 'Lsat_1_v5_gn_7_7041' => 'lsa', 'Lsat_1_v5_gn_9_33481' => 'lsa', 'Lsat_1_v5_gn_9_68260' => 'lsa', 'Manes.01G073100' => 'mes', 'Manes.01G266300' => 'mes', 'Manes.02G033300' => 'mes', 'Manes.05G017900' => 'mes', 'Manes.05G046100' => 'mes', 'Manes.08G080900' => 'mes', 'Manes.10G049400' => 'mes', 'Mapoly0009s0186' => 'mpo', 'Mapoly0036s0118' => 'mpo', 'Mapoly0101s0046' => 'mpo', 'MBI04_g30218_MAGBIO' => 'mbi', 'MBI04_g35564_MAGBIO' => 'mbi', 'MBI12_g34011_MAGBIO' => 'mbi', 'MBI14_g04655_MAGBIO' => 'mbi', 'MCO07G653' => 'mco', 'MCO10G173' => 'mco', 'MD01G1087100' => 'mdo', 'MD01G1104200' => 'mdo', 'MD02G1205100' => 'mdo', 'MD04G1079200' => 'mdo', 'MD04G1131400' => 'mdo', 'MD07G1121600' => 'mdo', 'MD07G1157300' => 'mdo', 'MD07G1171000' => 'mdo', 'MD12G1144500' => 'mdo', 'Medtr1g094610' => 'mtr', 'Medtr4g021795' => 'mtr', 'Medtr4g023760' => 'mtr', 'Medtr7g118050' => 'mtr', 'MELO3C005582.2' => 'cme', 'MELO3C005989.2' => 'cme', 'MELO3C006192.2' => 'cme', 'MELO3C009248.2' => 'cme', 'MELO3C019817.2' => 'cme', 'Migut.B01625' => 'egut', 'Migut.B01915' => 'egut', 'Migut.F01721' => 'egut', 'Migut.J00314' => 'egut', 'MSTRG.20742' => 'ama', 'MSTRG.8134' => 'ama', 'Nitab4.5_0000096g0010' => 'nta', 'Nitab4.5_0000202g0030' => 'nta', 'Nitab4.5_0000216g0370' => 'nta', 'Nitab4.5_0000457g0230' => 'nta', 'Nitab4.5_0001702g0170' => 'nta', 'Nitab4.5_0003607g0010' => 'nta', 'Nitab4.5_0004917g0020' => 'nta', 'Nitab4.5_0007059g0010' => 'nta', 'Nitab4.5_0007184g0010' => 'nta', 'Nitab4.5_0007346g0020' => 'nta', 'Nn1g00410' => 'nnu', 'Nn1g01252' => 'nnu', 'Nn2g11168' => 'nnu', 'Nn2g13403' => 'nnu', 'Nn2g13760' => 'nnu', 'Nn4g26380' => 'nnu', 'Oeu000806.2' => 'oeu', 'Oeu005788.1' => 'oeu', 'Oeu006900.3' => 'oeu', 'Oeu007797.1' => 'oeu', 'Oeu011932.1' => 'oeu', 'Oeu022739.1' => 'oeu', 'Oeu037918.1' => 'oeu', 'Oeu055490.2' => 'oeu', 'Os01g0844400' => 'osa', 'Os02g0819100' => 'osa', 'Os03g0804300' => 'osa', 'Os05g0458000' => 'osa', 'Os07g0467800' => 'osa', 'Os12g0602200' => 'osa', 'Peaxi162Scf00013g03444' => 'pax', 'Peaxi162Scf00094g01120' => 'pax', 'Peaxi162Scf00191g01211' => 'pax', 'Peaxi162Scf00238g01110' => 'pax', 'Peaxi162Scf00330g00719' => 'pax', 'Peaxi162Scf00627g00018' => 'pax', 'PGR031G2686' => 'pgr', 'PGR042G0809' => 'pgr', 'PGR142G0193' => 'pgr', 'PGSC0003DMG400011066' => 'stu', 'PGSC0003DMG400012041' => 'stu', 'PGSC0003DMG400013678' => 'stu', 'PGSC0003DMG400023477' => 'stu', 'PGSC0003DMG400025956' => 'stu', 'PGSC0003DMG401019151' => 'stu', 'Phvul.006G116400' => 'pvu', 'Phvul.007G097300' => 'pvu', 'Phvul.010G015000' => 'pvu', 'Phvul.010G083900' => 'pvu', 'Potri.001G117100' => 'ptr', 'Potri.002G147300' => 'ptr', 'Potri.003G115600' => 'ptr', 'Potri.006G087400' => 'ptr', 'Potri.010G226100' => 'ptr', 'Potri.014G069200' => 'ptr', 'Potri.014G104000' => 'ptr', 'Potri.016G100200' => 'ptr', 'Pp3c10_20450' => 'ppa', 'Pp3c1_42400' => 'ppa', 'Pp3c3_24390' => 'ppa', 'Pp3c3_2860' => 'ppa', 'PRCOL_00003193' => 'pco', 'Prupe.2G144500' => 'ppe', 'Prupe.2G195700' => 'ppe', 'Prupe.2G209800' => 'ppe', 'Prupe.5G080000' => 'ppe', 'Prupe.6G257900' => 'ppe', 'Psat3g001160' => 'psa', 'Psat6g181880' => 'psa', 'Psat7g233720' => 'psa', 'PSO063G7587' => 'pso', 'PSO339G2145' => 'pso', 'PSO339G3369' => 'pso', 'PSO478G2747' => 'pso', 'PSO513G0140' => 'pso', 'PSO782G1614' => 'pso', 'PSO782G4889' => 'pso', 'PSO782G5485' => 'pso', 'PSO801G0241' => 'pso', 'QL07p048854' => 'qlo', 'QL08p046745' => 'qlo', 'QL08p052606' => 'qlo', 'QL08p053414' => 'qlo', 'QL08p054868' => 'qlo', 'RcHm_v2.0_Chr1g0350251' => 'rch', 'RcHm_v2.0_Chr1g0360851' => 'rch', 'RcHm_v2.0_Chr1g0362791' => 'rch', 'RcHm_v2.0_Chr3g0466281' => 'rch', 'RcHm_v2.0_Chr7g0201481' => 'rch', 'Rhsim01G0148600' => 'rsi', 'Rhsim05G0194400' => 'rsi', 'Rhsim07G0000700' => 'rsi', 'Rhsim07G0000800' => 'rsi', 'Rhsim07G0027900' => 'rsi', 'Rhsim09G0149500' => 'rsi', 'RhsimUnG0186900' => 'rsi', 'Sabra01G0089900' => 'sbr', 'Sabra02G0114700' => 'sbr', 'Sabra02G0116300' => 'sbr', 'Sabra03G0080100' => 'sbr', 'Sabra08G0024300' => 'sbr', 'Sabra10G0174300' => 'sbr', 'Sabra14G0048900' => 'sbr', 'Sabra14G0076500' => 'sbr', 'SalBow5G2513' => 'sbo', 'Sc01g0002300' => 'sci', 'Sc01g0004450' => 'sci', 'Sc06g0001680' => 'sci', 'Sc23g0003580' => 'sci', 'Sed0000913' => 'sed', 'Sed0001655' => 'sed', 'Sed0007745' => 'sed', 'Sed0010951' => 'sed', 'Sed0017599' => 'sed', 'Sed0021405' => 'sed', 'Sed0022810' => 'sed', 'SEGI_07099' => 'sgi', 'SEGI_11931' => 'sgi', 'SEGI_13187' => 'sgi', 'SEGI_29958' => 'sgi', 'SEGI_36351' => 'sgi', 'SGA_v2.0_scaffold126G33770' => 'sas', 'SGA_v2.0_scaffold153G37003' => 'sas', 'SGA_v2.0_scaffold2G01359' => 'sas', 'SGA_v2.0_scaffold5G03064' => 'sas', 'SGA_v2.0_scaffold95G28903' => 'sas', 'SHI12701' => 'shi', 'SHI26410' => 'shi', 'SHI38997' => 'shi', 'SHI53759' => 'shi', 'SHI53886' => 'shi', 'SHI54714' => 'shi', 'SMO011G0041' => 'smo', 'SMO146G0251' => 'smo', 'SMO160G0004' => 'smo', 'SMO174G0057' => 'smo', 'SMO244G0089' => 'smo', 'SMO296G0011' => 'smo', 'Solyc01g091280.3' => 'sly', 'Solyc05g047610.3' => 'sly', 'Solyc05g047640.3' => 'sly', 'Solyc05g055630.3' => 'sly', 'Solyc10g018160.2' => 'sly', 'Solyc10g084820.2' => 'sly', 'Solyc10g086565.2' => 'sly', 'Sopen01g037030' => 'spe', 'Sopen05g027920' => 'spe', 'Sopen05g034070' => 'spe', 'Sopen10g007260' => 'spe', 'Sopen10g034260' => 'spe', 'Sopen10g035950' => 'spe', 'Sp3g07710' => 'spa', 'Sp4g27420' => 'spa', 'Sp5g02450' => 'spa', 'Sp6g01280' => 'spa', 'Sp6g38480' => 'spa', 'Sp7g20780' => 'spa', 'TAR374G1413' => 'tar', 'TAR623G1777' => 'tar', 'TAR629G2370' => 'tar', 'TAR633G1759' => 'tar', 'TAR636G3387' => 'tar', 'THA.LOC104802447' => 'tha', 'THA.LOC104813916' => 'tha', 'THA.LOC104816423' => 'tha', 'THA.LOC104817246' => 'tha', 'THA.LOC104825895' => 'tha', 'Thecc.01G335200' => 'tca', 'Thecc.01G377400' => 'tca', 'Thecc.03G262200' => 'tca', 'Thecc.05G036800' => 'tca', 'Thecc.10G080500' => 'tca', 'Thecc.10G080800' => 'tca', 'Thhalv10001560m.g' => 'esa', 'Thhalv10006120m.g' => 'esa', 'Thhalv10014375m.g' => 'esa', 'Thhalv10021264m.g' => 'esa', 'Thhalv10028856m.g' => 'esa', 'TPR.G1914' => 'tpr', 'TPR.G4757' => 'tpr', 'TPR.G5595' => 'tpr', 'TWI14G0952' => 'twi', 'TWI14G1307' => 'twi', 'TWI38G2143' => 'twi', 'TWI59G0826' => 'twi', 'TWI77G0527' => 'twi', 'TWI81G0150' => 'twi', 'unitig_21.g21018' => 'ugi', 'unitig_26.g9725' => 'ugi', 'unitig_744.g24653' => 'ugi', 'unitig_749.g13778' => 'ugi', 'unitig_899.g15035' => 'ugi', 'vmacro04296' => 'vma', 'vmacro04852' => 'vma', 'vmacro13404' => 'vma', 'vmacro20169' => 'vma', 'vmacro21014' => 'vma', 'VMungo0331G0237' => 'vmu', 'VMungo0331G0706' => 'vmu', 'VMungo0331G1361' => 'vmu', 'VMungo0331G1489' => 'vmu', 'VMungo0540G1037' => 'vmu', 'VMungo0720G2487' => 'vmu', 'VMungo0720G2721' => 'vmu', 'Zm00001eb086860' => 'zma', 'Zm00001eb104760' => 'zma', 'Zm00001eb148220' => 'zma', 'Zm00001eb259030' => 'zma', 'Zm00001eb289590' => 'zma', 'Zm00001eb420150' => 'zma' ), 'gf_id' => 'HOM05D000968', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000968' ), 'data_identifier' => 'HOM05D000968', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000968', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p31690' => 'bna', 'A03p36040' => 'bna', 'A03p53730' => 'bna', 'A04p01410' => 'bna', 'A05p05420' => 'bna', 'A05p39630' => 'bna', 'A05p39640' => 'bna', 'A09p00970' => 'bna', 'A09p53060' => 'bna', 'A10p31890' => 'bna', 'Aa31LG10G15040' => 'aar', 'Aa31LG1G21090' => 'aar', 'Aa31LG1G26900' => 'aar', 'Aa31LG3G1820' => 'aar', 'Aa31LG5G1100' => 'aar', 'Aa31LG6G4740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2265' => 'aag', 'Actinidia07998' => 'ach', 'Actinidia11266' => 'ach', 'Actinidia12682' => 'ach', 'Actinidia26479' => 'ach', 'Actinidia31406' => 'ach', 'Actinidia32437' => 'ach', 'Actinidia38862' => 'ach', 'Ah.05g174230' => 'amhyb', 'Ah.05g179070' => 'amhyb', 'Ah.05g179090' => 'amhyb', 'Ah.12g059950' => 'amhyb', 'AL3G20480' => 'aly', 'AL4G44520' => 'aly', 'AL5G43110' => 'aly', 'AL6G13890' => 'aly', 'AL6G52620' => 'aly', 'AL7G30830' => 'aly', 'Aqoxy1G00899' => 'aox', 'Aqoxy5G04333' => 'aox', 'Aqoxy7G00641' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3IZ0NN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4EF6AW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W9P8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79GA3M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C43NQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFCU6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G95YVJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCHK29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LU1UG8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX91RN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGB4B1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8DA0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9H7JI' => 'arhy', 'AT3G09320' => 'ath', 'AT3G60800' => 'ath', 'AT4G00840' => 'ath', 'AT4G22750' => 'ath', 'AT5G04270' => 'ath', 'ATR0090G003' => 'atr', 'ATR0559G349' => 'atr', 'ATR0680G261' => 'atr', 'ATR0810G048' => 'atr', 'Atru.chr12.831' => 'acertr', 'Atru.chr5.303' => 'acertr', 'Atru.chr5.748' => 'acertr', 'Atru.chr8.1999' => 'acertr', 'Atru.chr9.1436' => 'acertr', 'AUR62004211' => 'cqu', 'AUR62004548' => 'cqu', 'AUR62013637' => 'cqu', 'AUR62022662' => 'cqu', 'AUR62025777' => 'cqu', 'AUR62042386' => 'cqu', 'BcaB01g02310' => 'bca', 'BcaB01g06062' => 'bca', 'BcaB02g08975' => 'bca', 'BcaB02g08980' => 'bca', 'BcaC01g04228' => 'bca', 'BcaC01g06830' => 'bca', 'BcaC02g10186' => 'bca', 'BcaC02g12214' => 'bca', 'BcaC04g24101' => 'bca', 'BcaC05g29520' => 'bca', 'BcaC05g29661' => 'bca', 'BcaC06g32130' => 'bca', 'BcaC06g32131' => 'bca', 'BcaC07g40601' => 'bca', 'BcaC07g42641' => 'bca', 'BcaNung01038' => 'bca', 'BcaNung01676' => 'bca', 'BcaNung02480' => 'bca', 'BcaNung07376' => 'bca', 'BolC3t16146H' => 'bol', 'BolC3t16637H' => 'bol', 'BolC4t22257H' => 'bol', 'BolC4t24728H' => 'bol', 'BolC5t34517H' => 'bol', 'BolC7t45703H' => 'bol', 'BolC8t51166H' => 'bol', 'BolC9t53038H' => 'bol', 'BolC9t60000H' => 'bol', 'BraA01t01345Z' => 'bra', 'BraA01t01346Z' => 'bra', 'BraA01t01348Z' => 'bra', 'BraA03t12347Z' => 'bra', 'BraA03t12775Z' => 'bra', 'BraA03t14439Z' => 'bra', 'BraA04t15860Z' => 'bra', 'BraA05t19511Z' => 'bra', 'BraA05t22746Z' => 'bra', 'BraA09t35767Z' => 'bra', 'BraA09t40732Z' => 'bra', 'BraA10t45233Z' => 'bra', 'C03p38720' => 'bna', 'C03p43680' => 'bna', 'C04p06350' => 'bna', 'C04p31800' => 'bna', 'C05p58680' => 'bna', 'C07p52110' => 'bna', 'C08p35760' => 'bna', 'C09p01050' => 'bna', 'C09p72600' => 'bna', 'CAN.G106.2' => 'can', 'CAN.G1482.1' => 'can', 'CAN.G324.12' => 'can', 'CAN.G388.20' => 'can', 'CAN.G412.7' => 'can', 'CAN.G694.32' => 'can', 'CAN.G92.12' => 'can', 'CANSAT11G2353' => 'cansat', 'CANSAT21G1398' => 'cansat', 'CANSAT56G2456' => 'cansat', 'CANSAT56G3031' => 'cansat', 'CANSAT56G4539' => 'cansat', 'CARHR083680' => 'chi', 'CARHR171190' => 'chi', 'CARHR209010' => 'chi', 'CARHR229680' => 'chi', 'CARHR249490' => 'chi', 'Carub.0003s0844' => 'cru', 'Carub.0005s2755' => 'cru', 'Carub.0006s0322' => 'cru', 'Carub.0006s3586' => 'cru', 'Carub.0007s1855' => 'cru', 'Ca_07808_v3' => 'car', 'Ca_09535_v3' => 'car', 'Ca_10548_v3' => 'car', 'Ca_19913_v3' => 'car', 'Ca_19916_v3' => 'car', 'Ca_19975_v3' => 'car', 'CBR_g22876' => 'cbr', 'CBR_g22879' => 'cbr', 'CBR_g38491' => 'cbr', 'CBR_g54185' => 'cbr', 'CBR_g54190' => 'cbr', 'Cc02_g11020' => 'ccan', 'Cc02_g23920' => 'ccan', 'Cc02_g39860' => 'ccan', 'Cc02_g39870' => 'ccan', 'Cc03_g06760' => 'ccan', 'Cc06_g02450' => 'ccan', 'Cc09_g09450' => 'ccan', 'CDE02G1959' => 'cde', 'CDE04G0600' => 'cde', 'CDE07G1996' => 'cde', 'CDE07G2078' => 'cde', 'CDE11G0611' => 'cde', 'Cfa001683' => 'cfa', 'Cfa001734' => 'cfa', 'Cfa001737' => 'cfa', 'Cfa003751' => 'cfa', 'Cfa012019' => 'cfa', 'Cfa017353' => 'cfa', 'Cfa017732' => 'cfa', 'Cfa022464' => 'cfa', 'Ciclev10012400m.g' => 'ccl', 'Ciclev10021242m.g' => 'ccl', 'Ciclev10021302m.g' => 'ccl', 'Ciclev10021463m.g' => 'ccl', 'Ciclev10032359m.g' => 'ccl', 'CiPaw.01G081000' => 'cil', 'CiPaw.01G262500' => 'cil', 'CiPaw.01G269800' => 'cil', 'CiPaw.02G168400' => 'cil', 'CiPaw.05G119500' => 'cil', 'CiPaw.11G147300' => 'cil', 'ClCG01G003630' => 'cla', 'ClCG05G000510' => 'cla', 'ClCG05G002300' => 'cla', 'ClCG08G007650' => 'cla', 'ClCG10G021250' => 'cla', 'COL.COLO4_06218' => 'col', 'COL.COLO4_12538' => 'col', 'COL.COLO4_14775' => 'col', 'COL.COLO4_23875' => 'col', 'Cpa.g.sc141.16' => 'cpa', 'Cpa.g.sc169.16' => 'cpa', 'Cpa.g.sc244.4' => 'cpa', 'Cpa.g.sc244.5' => 'cpa', 'Cpa.g.sc29.87' => 'cpa', 'Cpa.g.sc53.115' => 'cpa', 'Cre03.g207502' => 'cre', 'Cre06.g277000' => 'cre', 'Cre09.g394050' => 'cre', 'CsaV3_3G007680' => 'csa', 'CsaV3_3G009710' => 'csa', 'CsaV3_3G034790' => 'csa', 'CsaV3_5G003750' => 'csa', 'CsaV3_6G036620' => 'csa', 'CSS0002288' => 'camsi', 'CSS0011250' => 'camsi', 'CSS0021619' => 'camsi', 'CSS0046701' => 'camsi', 'DCAR_006420' => 'dca', 'DCAR_006865' => 'dca', 'DCAR_008558' => 'dca', 'DCAR_028754' => 'dca', 'DCAR_028755' => 'dca', 'Dinv31218' => 'din', 'Dinv32371' => 'din', 'Dinv34250' => 'din', 'Dinv37156' => 'din', 'Dinv43704' => 'din', 'Duzib093G1811' => 'dzi', 'Duzib106G1622' => 'dzi', 'Duzib114G0504' => 'dzi', 'Duzib128G0338' => 'dzi', 'Duzib128G1577' => 'dzi', 'Duzib133G0104' => 'dzi', 'Duzib133G1080' => 'dzi', 'Duzib138G0324' => 'dzi', 'Duzib138G0394' => 'dzi', 'Duzib205G0122' => 'dzi', 'Duzib268G1020' => 'dzi', 'Duzib268G1359' => 'dzi', 'ECA232G3929' => 'eca', 'ECA236G2210' => 'eca', 'ECA236G2287' => 'eca', 'ECA240G4568' => 'eca', 'ECA247G0894' => 'eca', 'EL10Ac1g00200' => 'bvu', 'EL10Ac1g00886' => 'bvu', 'EL10As1g23091' => 'bvu', 'EL10As1g23092' => 'bvu', 'Eucgr.A01284' => 'egr', 'Eucgr.A01285' => 'egr', 'Eucgr.D02456' => 'egr', 'Eucgr.E00018' => 'egr', 'Eucgr.E01439' => 'egr', 'Eucgr.G02859' => 'egr', 'FAN01G0168' => 'fan', 'FAN01G0453' => 'fan', 'FAN01G2761' => 'fan', 'FAN02G1239' => 'fan', 'FAN03G0645' => 'fan', 'FAN03G2707' => 'fan', 'FAN03G2978' => 'fan', 'FAN04G0227' => 'fan', 'FAN06G0091' => 'fan', 'FAN06G1418' => 'fan', 'FAN06G1512' => 'fan', 'FAN06G1986' => 'fan', 'FAN06G2905' => 'fan', 'FAN06G4325' => 'fan', 'FAN08G0033' => 'fan', 'FAN09G0642' => 'fan', 'FAN10G1763' => 'fan', 'FAN10G2026' => 'fan', 'FAN10G2513' => 'fan', 'FAN10G3402' => 'fan', 'FAN10G3564' => 'fan', 'FAN10G3987' => 'fan', 'FAN13G1490' => 'fan', 'FAN14G5857' => 'fan', 'FAN18G1188' => 'fan', 'FvH4_5g00750' => 'fve', 'FvH4_6g13410' => 'fve', 'FvH4_7g11740' => 'fve', 'FvH4_7g17410' => 'fve', 'FvH4_7g18860' => 'fve', 'Glyma.01G099100' => 'gma', 'Glyma.01G142300' => 'gma', 'Glyma.03G025500' => 'gma', 'Glyma.03G069700' => 'gma', 'Glyma.03G260000' => 'gma', 'Glyma.09G269800' => 'gma', 'Glyma.10G208700' => 'gma', 'Glyma.18G220400' => 'gma', 'Glyma.20G182000' => 'gma', 'Gohir.A01G221726' => 'ghi', 'Gohir.A07G134600' => 'ghi', 'Gohir.A07G146000' => 'ghi', 'Gohir.A08G173900' => 'ghi', 'Gohir.A09G194900' => 'ghi', 'Gohir.A10G204100' => 'ghi', 'Gohir.A11G080600' => 'ghi', 'Gohir.A11G327500' => 'ghi', 'Gohir.A12G101800' => 'ghi', 'Gohir.D01G211200' => 'ghi', 'Gohir.D07G139200' => 'ghi', 'Gohir.D07G152100' => 'ghi', 'Gohir.D08G192600' => 'ghi', 'Gohir.D09G189200' => 'ghi', 'Gohir.D10G212000' => 'ghi', 'Gohir.D11G085200' => 'ghi', 'Gohir.D11G346400' => 'ghi', 'Gohir.D12G104800' => 'ghi', 'Gorai.001G151300' => 'gra', 'Gorai.001G174100' => 'gra', 'Gorai.002G257000' => 'gra', 'Gorai.004G202600' => 'gra', 'Gorai.007G090900' => 'gra', 'Gorai.007G376700' => 'gra', 'Gorai.008G114100' => 'gra', 'Gorai.011G237900' => 'gra', 'GSVIVG01005450001' => 'vvi', 'GSVIVG01016232001' => 'vvi', 'GSVIVG01026157001' => 'vvi', 'GSVIVG01027419001' => 'vvi', 'GSVIVG01027631001' => 'vvi', 'GSVIVG01034143001' => 'vvi', 'HanXRQChr03g0093921' => 'han', 'HanXRQChr04g0120001' => 'han', 'HanXRQChr04g0122561' => 'han', 'HanXRQChr09g0246851' => 'han', 'HanXRQChr10g0293311' => 'han', 'HanXRQChr13g0425231' => 'han', 'HanXRQChr16g0532571' => 'han', 'Haze_09050' => 'cav', 'Haze_15715' => 'cav', 'Haze_15716' => 'cav', 'Haze_16803' => 'cav', 'Haze_16850' => 'cav', 'Hma1.2p1_0301F.1_g118655' => 'hma', 'Hma1.2p1_0309F.1_g120590' => 'hma', 'Hma1.2p1_0936F.1_g238900' => 'hma', 'Hma1.2p1_3552F.1_g336740' => 'hma', 'HPP92_003520' => 'vpl', 'HPP92_006628' => 'vpl', 'HPP92_006645' => 'vpl', 'HPP92_014669' => 'vpl', 'HPP92_015077' => 'vpl', 'Hund16742' => 'sun', 'Hund17022' => 'sun', 'Lalb_Chr02g0152131' => 'lal', 'Lalb_Chr05g0225371' => 'lal', 'Lalb_Chr07g0189841' => 'lal', 'Lalb_Chr07g0192961' => 'lal', 'Lalb_Chr12g0208221' => 'lal', 'Lalb_Chr13g0291211' => 'lal', 'Lalb_Chr13g0291781' => 'lal', 'Lalb_Chr18g0044651' => 'lal', 'Lalb_Chr21g0313731' => 'lal', 'Lj1g0022533' => 'lja', 'Lj2A18T50' => 'lonja', 'Lj2A92G93' => 'lonja', 'Lj3A965T73' => 'lonja', 'Lj3g0000673' => 'lja', 'Lj3g0002666' => 'lja', 'Lj4g0016985' => 'lja', 'Lj5g0003625' => 'lja', 'Lj7A529G36' => 'lonja', 'Lj9A569T49' => 'lonja', 'Lj9A604T63' => 'lonja', 'Lsat_1_v5_gn_3_132060' => 'lsa', 'Lsat_1_v5_gn_4_68941' => 'lsa', 'Lsat_1_v5_gn_5_95580' => 'lsa', 'Lsat_1_v5_gn_7_161' => 'lsa', 'Lsat_1_v5_gn_7_7041' => 'lsa', 'Lsat_1_v5_gn_9_33481' => 'lsa', 'Lsat_1_v5_gn_9_68260' => 'lsa', 'Manes.01G073100' => 'mes', 'Manes.01G266300' => 'mes', 'Manes.02G033300' => 'mes', 'Manes.05G017900' => 'mes', 'Manes.05G046100' => 'mes', 'Manes.08G080900' => 'mes', 'Manes.10G049400' => 'mes', 'Mapoly0009s0186' => 'mpo', 'Mapoly0036s0118' => 'mpo', 'Mapoly0101s0046' => 'mpo', 'MBI04_g30218_MAGBIO' => 'mbi', 'MBI04_g35564_MAGBIO' => 'mbi', 'MBI12_g34011_MAGBIO' => 'mbi', 'MBI14_g04655_MAGBIO' => 'mbi', 'MCO07G653' => 'mco', 'MCO10G173' => 'mco', 'MD01G1087100' => 'mdo', 'MD01G1104200' => 'mdo', 'MD02G1205100' => 'mdo', 'MD04G1079200' => 'mdo', 'MD04G1131400' => 'mdo', 'MD07G1121600' => 'mdo', 'MD07G1157300' => 'mdo', 'MD07G1171000' => 'mdo', 'MD12G1144500' => 'mdo', 'Medtr1g094610' => 'mtr', 'Medtr4g021795' => 'mtr', 'Medtr4g023760' => 'mtr', 'Medtr7g118050' => 'mtr', 'MELO3C005582.2' => 'cme', 'MELO3C005989.2' => 'cme', 'MELO3C006192.2' => 'cme', 'MELO3C009248.2' => 'cme', 'MELO3C019817.2' => 'cme', 'Migut.B01625' => 'egut', 'Migut.B01915' => 'egut', 'Migut.F01721' => 'egut', 'Migut.J00314' => 'egut', 'MSTRG.20742' => 'ama', 'MSTRG.8134' => 'ama', 'Nitab4.5_0000096g0010' => 'nta', 'Nitab4.5_0000202g0030' => 'nta', 'Nitab4.5_0000216g0370' => 'nta', 'Nitab4.5_0000457g0230' => 'nta', 'Nitab4.5_0001702g0170' => 'nta', 'Nitab4.5_0003607g0010' => 'nta', 'Nitab4.5_0004917g0020' => 'nta', 'Nitab4.5_0007059g0010' => 'nta', 'Nitab4.5_0007184g0010' => 'nta', 'Nitab4.5_0007346g0020' => 'nta', 'Nn1g00410' => 'nnu', 'Nn1g01252' => 'nnu', 'Nn2g11168' => 'nnu', 'Nn2g13403' => 'nnu', 'Nn2g13760' => 'nnu', 'Nn4g26380' => 'nnu', 'Oeu000806.2' => 'oeu', 'Oeu005788.1' => 'oeu', 'Oeu006900.3' => 'oeu', 'Oeu007797.1' => 'oeu', 'Oeu011932.1' => 'oeu', 'Oeu022739.1' => 'oeu', 'Oeu037918.1' => 'oeu', 'Oeu055490.2' => 'oeu', 'Os01g0844400' => 'osa', 'Os02g0819100' => 'osa', 'Os03g0804300' => 'osa', 'Os05g0458000' => 'osa', 'Os07g0467800' => 'osa', 'Os12g0602200' => 'osa', 'Peaxi162Scf00013g03444' => 'pax', 'Peaxi162Scf00094g01120' => 'pax', 'Peaxi162Scf00191g01211' => 'pax', 'Peaxi162Scf00238g01110' => 'pax', 'Peaxi162Scf00330g00719' => 'pax', 'Peaxi162Scf00627g00018' => 'pax', 'PGR031G2686' => 'pgr', 'PGR042G0809' => 'pgr', 'PGR142G0193' => 'pgr', 'PGSC0003DMG400011066' => 'stu', 'PGSC0003DMG400012041' => 'stu', 'PGSC0003DMG400013678' => 'stu', 'PGSC0003DMG400023477' => 'stu', 'PGSC0003DMG400025956' => 'stu', 'PGSC0003DMG401019151' => 'stu', 'Phvul.006G116400' => 'pvu', 'Phvul.007G097300' => 'pvu', 'Phvul.010G015000' => 'pvu', 'Phvul.010G083900' => 'pvu', 'Potri.001G117100' => 'ptr', 'Potri.002G147300' => 'ptr', 'Potri.003G115600' => 'ptr', 'Potri.006G087400' => 'ptr', 'Potri.010G226100' => 'ptr', 'Potri.014G069200' => 'ptr', 'Potri.014G104000' => 'ptr', 'Potri.016G100200' => 'ptr', 'Pp3c10_20450' => 'ppa', 'Pp3c1_42400' => 'ppa', 'Pp3c3_24390' => 'ppa', 'Pp3c3_2860' => 'ppa', 'PRCOL_00003193' => 'pco', 'Prupe.2G144500' => 'ppe', 'Prupe.2G195700' => 'ppe', 'Prupe.2G209800' => 'ppe', 'Prupe.5G080000' => 'ppe', 'Prupe.6G257900' => 'ppe', 'Psat3g001160' => 'psa', 'Psat6g181880' => 'psa', 'Psat7g233720' => 'psa', 'PSO063G7587' => 'pso', 'PSO339G2145' => 'pso', 'PSO339G3369' => 'pso', 'PSO478G2747' => 'pso', 'PSO513G0140' => 'pso', 'PSO782G1614' => 'pso', 'PSO782G4889' => 'pso', 'PSO782G5485' => 'pso', 'PSO801G0241' => 'pso', 'QL07p048854' => 'qlo', 'QL08p046745' => 'qlo', 'QL08p052606' => 'qlo', 'QL08p053414' => 'qlo', 'QL08p054868' => 'qlo', 'RcHm_v2.0_Chr1g0350251' => 'rch', 'RcHm_v2.0_Chr1g0360851' => 'rch', 'RcHm_v2.0_Chr1g0362791' => 'rch', 'RcHm_v2.0_Chr3g0466281' => 'rch', 'RcHm_v2.0_Chr7g0201481' => 'rch', 'Rhsim01G0148600' => 'rsi', 'Rhsim05G0194400' => 'rsi', 'Rhsim07G0000700' => 'rsi', 'Rhsim07G0000800' => 'rsi', 'Rhsim07G0027900' => 'rsi', 'Rhsim09G0149500' => 'rsi', 'RhsimUnG0186900' => 'rsi', 'Sabra01G0089900' => 'sbr', 'Sabra02G0114700' => 'sbr', 'Sabra02G0116300' => 'sbr', 'Sabra03G0080100' => 'sbr', 'Sabra08G0024300' => 'sbr', 'Sabra10G0174300' => 'sbr', 'Sabra14G0048900' => 'sbr', 'Sabra14G0076500' => 'sbr', 'SalBow5G2513' => 'sbo', 'Sc01g0002300' => 'sci', 'Sc01g0004450' => 'sci', 'Sc06g0001680' => 'sci', 'Sc23g0003580' => 'sci', 'Sed0000913' => 'sed', 'Sed0001655' => 'sed', 'Sed0007745' => 'sed', 'Sed0010951' => 'sed', 'Sed0017599' => 'sed', 'Sed0021405' => 'sed', 'Sed0022810' => 'sed', 'SEGI_07099' => 'sgi', 'SEGI_11931' => 'sgi', 'SEGI_13187' => 'sgi', 'SEGI_29958' => 'sgi', 'SEGI_36351' => 'sgi', 'SGA_v2.0_scaffold126G33770' => 'sas', 'SGA_v2.0_scaffold153G37003' => 'sas', 'SGA_v2.0_scaffold2G01359' => 'sas', 'SGA_v2.0_scaffold5G03064' => 'sas', 'SGA_v2.0_scaffold95G28903' => 'sas', 'SHI12701' => 'shi', 'SHI26410' => 'shi', 'SHI38997' => 'shi', 'SHI53759' => 'shi', 'SHI53886' => 'shi', 'SHI54714' => 'shi', 'SMO011G0041' => 'smo', 'SMO146G0251' => 'smo', 'SMO160G0004' => 'smo', 'SMO174G0057' => 'smo', 'SMO244G0089' => 'smo', 'SMO296G0011' => 'smo', 'Solyc01g091280.3' => 'sly', 'Solyc05g047610.3' => 'sly', 'Solyc05g047640.3' => 'sly', 'Solyc05g055630.3' => 'sly', 'Solyc10g018160.2' => 'sly', 'Solyc10g084820.2' => 'sly', 'Solyc10g086565.2' => 'sly', 'Sopen01g037030' => 'spe', 'Sopen05g027920' => 'spe', 'Sopen05g034070' => 'spe', 'Sopen10g007260' => 'spe', 'Sopen10g034260' => 'spe', 'Sopen10g035950' => 'spe', 'Sp3g07710' => 'spa', 'Sp4g27420' => 'spa', 'Sp5g02450' => 'spa', 'Sp6g01280' => 'spa', 'Sp6g38480' => 'spa', 'Sp7g20780' => 'spa', 'TAR374G1413' => 'tar', 'TAR623G1777' => 'tar', 'TAR629G2370' => 'tar', 'TAR633G1759' => 'tar', 'TAR636G3387' => 'tar', 'THA.LOC104802447' => 'tha', 'THA.LOC104813916' => 'tha', 'THA.LOC104816423' => 'tha', 'THA.LOC104817246' => 'tha', 'THA.LOC104825895' => 'tha', 'Thecc.01G335200' => 'tca', 'Thecc.01G377400' => 'tca', 'Thecc.03G262200' => 'tca', 'Thecc.05G036800' => 'tca', 'Thecc.10G080500' => 'tca', 'Thecc.10G080800' => 'tca', 'Thhalv10001560m.g' => 'esa', 'Thhalv10006120m.g' => 'esa', 'Thhalv10014375m.g' => 'esa', 'Thhalv10021264m.g' => 'esa', 'Thhalv10028856m.g' => 'esa', 'TPR.G1914' => 'tpr', 'TPR.G4757' => 'tpr', 'TPR.G5595' => 'tpr', 'TWI14G0952' => 'twi', 'TWI14G1307' => 'twi', 'TWI38G2143' => 'twi', 'TWI59G0826' => 'twi', 'TWI77G0527' => 'twi', 'TWI81G0150' => 'twi', 'unitig_21.g21018' => 'ugi', 'unitig_26.g9725' => 'ugi', 'unitig_744.g24653' => 'ugi', 'unitig_749.g13778' => 'ugi', 'unitig_899.g15035' => 'ugi', 'vmacro04296' => 'vma', 'vmacro04852' => 'vma', 'vmacro13404' => 'vma', 'vmacro20169' => 'vma', 'vmacro21014' => 'vma', 'VMungo0331G0237' => 'vmu', 'VMungo0331G0706' => 'vmu', 'VMungo0331G1361' => 'vmu', 'VMungo0331G1489' => 'vmu', 'VMungo0540G1037' => 'vmu', 'VMungo0720G2487' => 'vmu', 'VMungo0720G2721' => 'vmu', 'Zm00001eb086860' => 'zma', 'Zm00001eb104760' => 'zma', 'Zm00001eb148220' => 'zma', 'Zm00001eb259030' => 'zma', 'Zm00001eb289590' => 'zma', 'Zm00001eb420150' => 'zma' ) $gf_id = 'HOM05D000968' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000968' ) $data_identifier = 'HOM05D000968' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 19, 'bol' => (int) 9, 'bra' => (int) 12, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 5, 'ccan' => (int) 7, 'cde' => (int) 5, 'cfa' => (int) 8, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 4, 'dca' => (int) 5, 'din' => (int) 5, 'dzi' => (int) 12, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 25, 'fve' => (int) 5, 'gma' => (int) 9, 'ghi' => (int) 18, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 7, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 5, 'sun' => (int) 2, 'lal' => (int) 9, 'lja' => (int) 5, 'lonja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 9, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 2, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 3, 'stu' => (int) 6, 'pvu' => (int) 4, 'ptr' => (int) 8, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 3, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 1, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 5, 'sas' => (int) 5, 'shi' => (int) 6, 'smo' => (int) 6, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 3, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420150' $species_info = array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ) $local_species = 'aar' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000968', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p31690' => 'bna', 'A03p36040' => 'bna', 'A03p53730' => 'bna', 'A04p01410' => 'bna', 'A05p05420' => 'bna', 'A05p39630' => 'bna', 'A05p39640' => 'bna', 'A09p00970' => 'bna', 'A09p53060' => 'bna', 'A10p31890' => 'bna', 'Aa31LG10G15040' => 'aar', 'Aa31LG1G21090' => 'aar', 'Aa31LG1G26900' => 'aar', 'Aa31LG3G1820' => 'aar', 'Aa31LG5G1100' => 'aar', 'Aa31LG6G4740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2265' => 'aag', 'Actinidia07998' => 'ach', 'Actinidia11266' => 'ach', 'Actinidia12682' => 'ach', 'Actinidia26479' => 'ach', 'Actinidia31406' => 'ach', 'Actinidia32437' => 'ach', 'Actinidia38862' => 'ach', 'Ah.05g174230' => 'amhyb', 'Ah.05g179070' => 'amhyb', 'Ah.05g179090' => 'amhyb', 'Ah.12g059950' => 'amhyb', 'AL3G20480' => 'aly', 'AL4G44520' => 'aly', 'AL5G43110' => 'aly', 'AL6G13890' => 'aly', 'AL6G52620' => 'aly', 'AL7G30830' => 'aly', 'Aqoxy1G00899' => 'aox', 'Aqoxy5G04333' => 'aox', 'Aqoxy7G00641' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3IZ0NN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4EF6AW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W9P8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79GA3M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C43NQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFCU6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G95YVJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCHK29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LU1UG8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX91RN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGB4B1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8DA0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9H7JI' => 'arhy', 'AT3G09320' => 'ath', 'AT3G60800' => 'ath', 'AT4G00840' => 'ath', 'AT4G22750' => 'ath', 'AT5G04270' => 'ath', 'ATR0090G003' => 'atr', 'ATR0559G349' => 'atr', 'ATR0680G261' => 'atr', 'ATR0810G048' => 'atr', 'Atru.chr12.831' => 'acertr', 'Atru.chr5.303' => 'acertr', 'Atru.chr5.748' => 'acertr', 'Atru.chr8.1999' => 'acertr', 'Atru.chr9.1436' => 'acertr', 'AUR62004211' => 'cqu', 'AUR62004548' => 'cqu', 'AUR62013637' => 'cqu', 'AUR62022662' => 'cqu', 'AUR62025777' => 'cqu', 'AUR62042386' => 'cqu', 'BcaB01g02310' => 'bca', 'BcaB01g06062' => 'bca', 'BcaB02g08975' => 'bca', 'BcaB02g08980' => 'bca', 'BcaC01g04228' => 'bca', 'BcaC01g06830' => 'bca', 'BcaC02g10186' => 'bca', 'BcaC02g12214' => 'bca', 'BcaC04g24101' => 'bca', 'BcaC05g29520' => 'bca', 'BcaC05g29661' => 'bca', 'BcaC06g32130' => 'bca', 'BcaC06g32131' => 'bca', 'BcaC07g40601' => 'bca', 'BcaC07g42641' => 'bca', 'BcaNung01038' => 'bca', 'BcaNung01676' => 'bca', 'BcaNung02480' => 'bca', 'BcaNung07376' => 'bca', 'BolC3t16146H' => 'bol', 'BolC3t16637H' => 'bol', 'BolC4t22257H' => 'bol', 'BolC4t24728H' => 'bol', 'BolC5t34517H' => 'bol', 'BolC7t45703H' => 'bol', 'BolC8t51166H' => 'bol', 'BolC9t53038H' => 'bol', 'BolC9t60000H' => 'bol', 'BraA01t01345Z' => 'bra', 'BraA01t01346Z' => 'bra', 'BraA01t01348Z' => 'bra', 'BraA03t12347Z' => 'bra', 'BraA03t12775Z' => 'bra', 'BraA03t14439Z' => 'bra', 'BraA04t15860Z' => 'bra', 'BraA05t19511Z' => 'bra', 'BraA05t22746Z' => 'bra', 'BraA09t35767Z' => 'bra', 'BraA09t40732Z' => 'bra', 'BraA10t45233Z' => 'bra', 'C03p38720' => 'bna', 'C03p43680' => 'bna', 'C04p06350' => 'bna', 'C04p31800' => 'bna', 'C05p58680' => 'bna', 'C07p52110' => 'bna', 'C08p35760' => 'bna', 'C09p01050' => 'bna', 'C09p72600' => 'bna', 'CAN.G106.2' => 'can', 'CAN.G1482.1' => 'can', 'CAN.G324.12' => 'can', 'CAN.G388.20' => 'can', 'CAN.G412.7' => 'can', 'CAN.G694.32' => 'can', 'CAN.G92.12' => 'can', 'CANSAT11G2353' => 'cansat', 'CANSAT21G1398' => 'cansat', 'CANSAT56G2456' => 'cansat', 'CANSAT56G3031' => 'cansat', 'CANSAT56G4539' => 'cansat', 'CARHR083680' => 'chi', 'CARHR171190' => 'chi', 'CARHR209010' => 'chi', 'CARHR229680' => 'chi', 'CARHR249490' => 'chi', 'Carub.0003s0844' => 'cru', 'Carub.0005s2755' => 'cru', 'Carub.0006s0322' => 'cru', 'Carub.0006s3586' => 'cru', 'Carub.0007s1855' => 'cru', 'Ca_07808_v3' => 'car', 'Ca_09535_v3' => 'car', 'Ca_10548_v3' => 'car', 'Ca_19913_v3' => 'car', 'Ca_19916_v3' => 'car', 'Ca_19975_v3' => 'car', 'CBR_g22876' => 'cbr', 'CBR_g22879' => 'cbr', 'CBR_g38491' => 'cbr', 'CBR_g54185' => 'cbr', 'CBR_g54190' => 'cbr', 'Cc02_g11020' => 'ccan', 'Cc02_g23920' => 'ccan', 'Cc02_g39860' => 'ccan', 'Cc02_g39870' => 'ccan', 'Cc03_g06760' => 'ccan', 'Cc06_g02450' => 'ccan', 'Cc09_g09450' => 'ccan', 'CDE02G1959' => 'cde', 'CDE04G0600' => 'cde', 'CDE07G1996' => 'cde', 'CDE07G2078' => 'cde', 'CDE11G0611' => 'cde', 'Cfa001683' => 'cfa', 'Cfa001734' => 'cfa', 'Cfa001737' => 'cfa', 'Cfa003751' => 'cfa', 'Cfa012019' => 'cfa', 'Cfa017353' => 'cfa', 'Cfa017732' => 'cfa', 'Cfa022464' => 'cfa', 'Ciclev10012400m.g' => 'ccl', 'Ciclev10021242m.g' => 'ccl', 'Ciclev10021302m.g' => 'ccl', 'Ciclev10021463m.g' => 'ccl', 'Ciclev10032359m.g' => 'ccl', 'CiPaw.01G081000' => 'cil', 'CiPaw.01G262500' => 'cil', 'CiPaw.01G269800' => 'cil', 'CiPaw.02G168400' => 'cil', 'CiPaw.05G119500' => 'cil', 'CiPaw.11G147300' => 'cil', 'ClCG01G003630' => 'cla', 'ClCG05G000510' => 'cla', 'ClCG05G002300' => 'cla', 'ClCG08G007650' => 'cla', 'ClCG10G021250' => 'cla', 'COL.COLO4_06218' => 'col', 'COL.COLO4_12538' => 'col', 'COL.COLO4_14775' => 'col', 'COL.COLO4_23875' => 'col', 'Cpa.g.sc141.16' => 'cpa', 'Cpa.g.sc169.16' => 'cpa', 'Cpa.g.sc244.4' => 'cpa', 'Cpa.g.sc244.5' => 'cpa', 'Cpa.g.sc29.87' => 'cpa', 'Cpa.g.sc53.115' => 'cpa', 'Cre03.g207502' => 'cre', 'Cre06.g277000' => 'cre', 'Cre09.g394050' => 'cre', 'CsaV3_3G007680' => 'csa', 'CsaV3_3G009710' => 'csa', 'CsaV3_3G034790' => 'csa', 'CsaV3_5G003750' => 'csa', 'CsaV3_6G036620' => 'csa', 'CSS0002288' => 'camsi', 'CSS0011250' => 'camsi', 'CSS0021619' => 'camsi', 'CSS0046701' => 'camsi', 'DCAR_006420' => 'dca', 'DCAR_006865' => 'dca', 'DCAR_008558' => 'dca', 'DCAR_028754' => 'dca', 'DCAR_028755' => 'dca', 'Dinv31218' => 'din', 'Dinv32371' => 'din', 'Dinv34250' => 'din', 'Dinv37156' => 'din', 'Dinv43704' => 'din', 'Duzib093G1811' => 'dzi', 'Duzib106G1622' => 'dzi', 'Duzib114G0504' => 'dzi', 'Duzib128G0338' => 'dzi', 'Duzib128G1577' => 'dzi', 'Duzib133G0104' => 'dzi', 'Duzib133G1080' => 'dzi', 'Duzib138G0324' => 'dzi', 'Duzib138G0394' => 'dzi', 'Duzib205G0122' => 'dzi', 'Duzib268G1020' => 'dzi', 'Duzib268G1359' => 'dzi', 'ECA232G3929' => 'eca', 'ECA236G2210' => 'eca', 'ECA236G2287' => 'eca', 'ECA240G4568' => 'eca', 'ECA247G0894' => 'eca', 'EL10Ac1g00200' => 'bvu', 'EL10Ac1g00886' => 'bvu', 'EL10As1g23091' => 'bvu', 'EL10As1g23092' => 'bvu', 'Eucgr.A01284' => 'egr', 'Eucgr.A01285' => 'egr', 'Eucgr.D02456' => 'egr', 'Eucgr.E00018' => 'egr', 'Eucgr.E01439' => 'egr', 'Eucgr.G02859' => 'egr', 'FAN01G0168' => 'fan', 'FAN01G0453' => 'fan', 'FAN01G2761' => 'fan', 'FAN02G1239' => 'fan', 'FAN03G0645' => 'fan', 'FAN03G2707' => 'fan', 'FAN03G2978' => 'fan', 'FAN04G0227' => 'fan', 'FAN06G0091' => 'fan', 'FAN06G1418' => 'fan', 'FAN06G1512' => 'fan', 'FAN06G1986' => 'fan', 'FAN06G2905' => 'fan', 'FAN06G4325' => 'fan', 'FAN08G0033' => 'fan', 'FAN09G0642' => 'fan', 'FAN10G1763' => 'fan', 'FAN10G2026' => 'fan', 'FAN10G2513' => 'fan', 'FAN10G3402' => 'fan', 'FAN10G3564' => 'fan', 'FAN10G3987' => 'fan', 'FAN13G1490' => 'fan', 'FAN14G5857' => 'fan', 'FAN18G1188' => 'fan', 'FvH4_5g00750' => 'fve', 'FvH4_6g13410' => 'fve', 'FvH4_7g11740' => 'fve', 'FvH4_7g17410' => 'fve', 'FvH4_7g18860' => 'fve', 'Glyma.01G099100' => 'gma', 'Glyma.01G142300' => 'gma', 'Glyma.03G025500' => 'gma', 'Glyma.03G069700' => 'gma', 'Glyma.03G260000' => 'gma', 'Glyma.09G269800' => 'gma', 'Glyma.10G208700' => 'gma', 'Glyma.18G220400' => 'gma', 'Glyma.20G182000' => 'gma', 'Gohir.A01G221726' => 'ghi', 'Gohir.A07G134600' => 'ghi', 'Gohir.A07G146000' => 'ghi', 'Gohir.A08G173900' => 'ghi', 'Gohir.A09G194900' => 'ghi', 'Gohir.A10G204100' => 'ghi', 'Gohir.A11G080600' => 'ghi', 'Gohir.A11G327500' => 'ghi', 'Gohir.A12G101800' => 'ghi', 'Gohir.D01G211200' => 'ghi', 'Gohir.D07G139200' => 'ghi', 'Gohir.D07G152100' => 'ghi', 'Gohir.D08G192600' => 'ghi', 'Gohir.D09G189200' => 'ghi', 'Gohir.D10G212000' => 'ghi', 'Gohir.D11G085200' => 'ghi', 'Gohir.D11G346400' => 'ghi', 'Gohir.D12G104800' => 'ghi', 'Gorai.001G151300' => 'gra', 'Gorai.001G174100' => 'gra', 'Gorai.002G257000' => 'gra', 'Gorai.004G202600' => 'gra', 'Gorai.007G090900' => 'gra', 'Gorai.007G376700' => 'gra', 'Gorai.008G114100' => 'gra', 'Gorai.011G237900' => 'gra', 'GSVIVG01005450001' => 'vvi', 'GSVIVG01016232001' => 'vvi', 'GSVIVG01026157001' => 'vvi', 'GSVIVG01027419001' => 'vvi', 'GSVIVG01027631001' => 'vvi', 'GSVIVG01034143001' => 'vvi', 'HanXRQChr03g0093921' => 'han', 'HanXRQChr04g0120001' => 'han', 'HanXRQChr04g0122561' => 'han', 'HanXRQChr09g0246851' => 'han', 'HanXRQChr10g0293311' => 'han', 'HanXRQChr13g0425231' => 'han', 'HanXRQChr16g0532571' => 'han', 'Haze_09050' => 'cav', 'Haze_15715' => 'cav', 'Haze_15716' => 'cav', 'Haze_16803' => 'cav', 'Haze_16850' => 'cav', 'Hma1.2p1_0301F.1_g118655' => 'hma', 'Hma1.2p1_0309F.1_g120590' => 'hma', 'Hma1.2p1_0936F.1_g238900' => 'hma', 'Hma1.2p1_3552F.1_g336740' => 'hma', 'HPP92_003520' => 'vpl', 'HPP92_006628' => 'vpl', 'HPP92_006645' => 'vpl', 'HPP92_014669' => 'vpl', 'HPP92_015077' => 'vpl', 'Hund16742' => 'sun', 'Hund17022' => 'sun', 'Lalb_Chr02g0152131' => 'lal', 'Lalb_Chr05g0225371' => 'lal', 'Lalb_Chr07g0189841' => 'lal', 'Lalb_Chr07g0192961' => 'lal', 'Lalb_Chr12g0208221' => 'lal', 'Lalb_Chr13g0291211' => 'lal', 'Lalb_Chr13g0291781' => 'lal', 'Lalb_Chr18g0044651' => 'lal', 'Lalb_Chr21g0313731' => 'lal', 'Lj1g0022533' => 'lja', 'Lj2A18T50' => 'lonja', 'Lj2A92G93' => 'lonja', 'Lj3A965T73' => 'lonja', 'Lj3g0000673' => 'lja', 'Lj3g0002666' => 'lja', 'Lj4g0016985' => 'lja', 'Lj5g0003625' => 'lja', 'Lj7A529G36' => 'lonja', 'Lj9A569T49' => 'lonja', 'Lj9A604T63' => 'lonja', 'Lsat_1_v5_gn_3_132060' => 'lsa', 'Lsat_1_v5_gn_4_68941' => 'lsa', 'Lsat_1_v5_gn_5_95580' => 'lsa', 'Lsat_1_v5_gn_7_161' => 'lsa', 'Lsat_1_v5_gn_7_7041' => 'lsa', 'Lsat_1_v5_gn_9_33481' => 'lsa', 'Lsat_1_v5_gn_9_68260' => 'lsa', 'Manes.01G073100' => 'mes', 'Manes.01G266300' => 'mes', 'Manes.02G033300' => 'mes', 'Manes.05G017900' => 'mes', 'Manes.05G046100' => 'mes', 'Manes.08G080900' => 'mes', 'Manes.10G049400' => 'mes', 'Mapoly0009s0186' => 'mpo', 'Mapoly0036s0118' => 'mpo', 'Mapoly0101s0046' => 'mpo', 'MBI04_g30218_MAGBIO' => 'mbi', 'MBI04_g35564_MAGBIO' => 'mbi', 'MBI12_g34011_MAGBIO' => 'mbi', 'MBI14_g04655_MAGBIO' => 'mbi', 'MCO07G653' => 'mco', 'MCO10G173' => 'mco', 'MD01G1087100' => 'mdo', 'MD01G1104200' => 'mdo', 'MD02G1205100' => 'mdo', 'MD04G1079200' => 'mdo', 'MD04G1131400' => 'mdo', 'MD07G1121600' => 'mdo', 'MD07G1157300' => 'mdo', 'MD07G1171000' => 'mdo', 'MD12G1144500' => 'mdo', 'Medtr1g094610' => 'mtr', 'Medtr4g021795' => 'mtr', 'Medtr4g023760' => 'mtr', 'Medtr7g118050' => 'mtr', 'MELO3C005582.2' => 'cme', 'MELO3C005989.2' => 'cme', 'MELO3C006192.2' => 'cme', 'MELO3C009248.2' => 'cme', 'MELO3C019817.2' => 'cme', 'Migut.B01625' => 'egut', 'Migut.B01915' => 'egut', 'Migut.F01721' => 'egut', 'Migut.J00314' => 'egut', 'MSTRG.20742' => 'ama', 'MSTRG.8134' => 'ama', 'Nitab4.5_0000096g0010' => 'nta', 'Nitab4.5_0000202g0030' => 'nta', 'Nitab4.5_0000216g0370' => 'nta', 'Nitab4.5_0000457g0230' => 'nta', 'Nitab4.5_0001702g0170' => 'nta', 'Nitab4.5_0003607g0010' => 'nta', 'Nitab4.5_0004917g0020' => 'nta', 'Nitab4.5_0007059g0010' => 'nta', 'Nitab4.5_0007184g0010' => 'nta', 'Nitab4.5_0007346g0020' => 'nta', 'Nn1g00410' => 'nnu', 'Nn1g01252' => 'nnu', 'Nn2g11168' => 'nnu', 'Nn2g13403' => 'nnu', 'Nn2g13760' => 'nnu', 'Nn4g26380' => 'nnu', 'Oeu000806.2' => 'oeu', 'Oeu005788.1' => 'oeu', 'Oeu006900.3' => 'oeu', 'Oeu007797.1' => 'oeu', 'Oeu011932.1' => 'oeu', 'Oeu022739.1' => 'oeu', 'Oeu037918.1' => 'oeu', 'Oeu055490.2' => 'oeu', 'Os01g0844400' => 'osa', 'Os02g0819100' => 'osa', 'Os03g0804300' => 'osa', 'Os05g0458000' => 'osa', 'Os07g0467800' => 'osa', 'Os12g0602200' => 'osa', 'Peaxi162Scf00013g03444' => 'pax', 'Peaxi162Scf00094g01120' => 'pax', 'Peaxi162Scf00191g01211' => 'pax', 'Peaxi162Scf00238g01110' => 'pax', 'Peaxi162Scf00330g00719' => 'pax', 'Peaxi162Scf00627g00018' => 'pax', 'PGR031G2686' => 'pgr', 'PGR042G0809' => 'pgr', 'PGR142G0193' => 'pgr', 'PGSC0003DMG400011066' => 'stu', 'PGSC0003DMG400012041' => 'stu', 'PGSC0003DMG400013678' => 'stu', 'PGSC0003DMG400023477' => 'stu', 'PGSC0003DMG400025956' => 'stu', 'PGSC0003DMG401019151' => 'stu', 'Phvul.006G116400' => 'pvu', 'Phvul.007G097300' => 'pvu', 'Phvul.010G015000' => 'pvu', 'Phvul.010G083900' => 'pvu', 'Potri.001G117100' => 'ptr', 'Potri.002G147300' => 'ptr', 'Potri.003G115600' => 'ptr', 'Potri.006G087400' => 'ptr', 'Potri.010G226100' => 'ptr', 'Potri.014G069200' => 'ptr', 'Potri.014G104000' => 'ptr', 'Potri.016G100200' => 'ptr', 'Pp3c10_20450' => 'ppa', 'Pp3c1_42400' => 'ppa', 'Pp3c3_24390' => 'ppa', 'Pp3c3_2860' => 'ppa', 'PRCOL_00003193' => 'pco', 'Prupe.2G144500' => 'ppe', 'Prupe.2G195700' => 'ppe', 'Prupe.2G209800' => 'ppe', 'Prupe.5G080000' => 'ppe', 'Prupe.6G257900' => 'ppe', 'Psat3g001160' => 'psa', 'Psat6g181880' => 'psa', 'Psat7g233720' => 'psa', 'PSO063G7587' => 'pso', 'PSO339G2145' => 'pso', 'PSO339G3369' => 'pso', 'PSO478G2747' => 'pso', 'PSO513G0140' => 'pso', 'PSO782G1614' => 'pso', 'PSO782G4889' => 'pso', 'PSO782G5485' => 'pso', 'PSO801G0241' => 'pso', 'QL07p048854' => 'qlo', 'QL08p046745' => 'qlo', 'QL08p052606' => 'qlo', 'QL08p053414' => 'qlo', 'QL08p054868' => 'qlo', 'RcHm_v2.0_Chr1g0350251' => 'rch', 'RcHm_v2.0_Chr1g0360851' => 'rch', 'RcHm_v2.0_Chr1g0362791' => 'rch', 'RcHm_v2.0_Chr3g0466281' => 'rch', 'RcHm_v2.0_Chr7g0201481' => 'rch', 'Rhsim01G0148600' => 'rsi', 'Rhsim05G0194400' => 'rsi', 'Rhsim07G0000700' => 'rsi', 'Rhsim07G0000800' => 'rsi', 'Rhsim07G0027900' => 'rsi', 'Rhsim09G0149500' => 'rsi', 'RhsimUnG0186900' => 'rsi', 'Sabra01G0089900' => 'sbr', 'Sabra02G0114700' => 'sbr', 'Sabra02G0116300' => 'sbr', 'Sabra03G0080100' => 'sbr', 'Sabra08G0024300' => 'sbr', 'Sabra10G0174300' => 'sbr', 'Sabra14G0048900' => 'sbr', 'Sabra14G0076500' => 'sbr', 'SalBow5G2513' => 'sbo', 'Sc01g0002300' => 'sci', 'Sc01g0004450' => 'sci', 'Sc06g0001680' => 'sci', 'Sc23g0003580' => 'sci', 'Sed0000913' => 'sed', 'Sed0001655' => 'sed', 'Sed0007745' => 'sed', 'Sed0010951' => 'sed', 'Sed0017599' => 'sed', 'Sed0021405' => 'sed', 'Sed0022810' => 'sed', 'SEGI_07099' => 'sgi', 'SEGI_11931' => 'sgi', 'SEGI_13187' => 'sgi', 'SEGI_29958' => 'sgi', 'SEGI_36351' => 'sgi', 'SGA_v2.0_scaffold126G33770' => 'sas', 'SGA_v2.0_scaffold153G37003' => 'sas', 'SGA_v2.0_scaffold2G01359' => 'sas', 'SGA_v2.0_scaffold5G03064' => 'sas', 'SGA_v2.0_scaffold95G28903' => 'sas', 'SHI12701' => 'shi', 'SHI26410' => 'shi', 'SHI38997' => 'shi', 'SHI53759' => 'shi', 'SHI53886' => 'shi', 'SHI54714' => 'shi', 'SMO011G0041' => 'smo', 'SMO146G0251' => 'smo', 'SMO160G0004' => 'smo', 'SMO174G0057' => 'smo', 'SMO244G0089' => 'smo', 'SMO296G0011' => 'smo', 'Solyc01g091280.3' => 'sly', 'Solyc05g047610.3' => 'sly', 'Solyc05g047640.3' => 'sly', 'Solyc05g055630.3' => 'sly', 'Solyc10g018160.2' => 'sly', 'Solyc10g084820.2' => 'sly', 'Solyc10g086565.2' => 'sly', 'Sopen01g037030' => 'spe', 'Sopen05g027920' => 'spe', 'Sopen05g034070' => 'spe', 'Sopen10g007260' => 'spe', 'Sopen10g034260' => 'spe', 'Sopen10g035950' => 'spe', 'Sp3g07710' => 'spa', 'Sp4g27420' => 'spa', 'Sp5g02450' => 'spa', 'Sp6g01280' => 'spa', 'Sp6g38480' => 'spa', 'Sp7g20780' => 'spa', 'TAR374G1413' => 'tar', 'TAR623G1777' => 'tar', 'TAR629G2370' => 'tar', 'TAR633G1759' => 'tar', 'TAR636G3387' => 'tar', 'THA.LOC104802447' => 'tha', 'THA.LOC104813916' => 'tha', 'THA.LOC104816423' => 'tha', 'THA.LOC104817246' => 'tha', 'THA.LOC104825895' => 'tha', 'Thecc.01G335200' => 'tca', 'Thecc.01G377400' => 'tca', 'Thecc.03G262200' => 'tca', 'Thecc.05G036800' => 'tca', 'Thecc.10G080500' => 'tca', 'Thecc.10G080800' => 'tca', 'Thhalv10001560m.g' => 'esa', 'Thhalv10006120m.g' => 'esa', 'Thhalv10014375m.g' => 'esa', 'Thhalv10021264m.g' => 'esa', 'Thhalv10028856m.g' => 'esa', 'TPR.G1914' => 'tpr', 'TPR.G4757' => 'tpr', 'TPR.G5595' => 'tpr', 'TWI14G0952' => 'twi', 'TWI14G1307' => 'twi', 'TWI38G2143' => 'twi', 'TWI59G0826' => 'twi', 'TWI77G0527' => 'twi', 'TWI81G0150' => 'twi', 'unitig_21.g21018' => 'ugi', 'unitig_26.g9725' => 'ugi', 'unitig_744.g24653' => 'ugi', 'unitig_749.g13778' => 'ugi', 'unitig_899.g15035' => 'ugi', 'vmacro04296' => 'vma', 'vmacro04852' => 'vma', 'vmacro13404' => 'vma', 'vmacro20169' => 'vma', 'vmacro21014' => 'vma', 'VMungo0331G0237' => 'vmu', 'VMungo0331G0706' => 'vmu', 'VMungo0331G1361' => 'vmu', 'VMungo0331G1489' => 'vmu', 'VMungo0540G1037' => 'vmu', 'VMungo0720G2487' => 'vmu', 'VMungo0720G2721' => 'vmu', 'Zm00001eb086860' => 'zma', 'Zm00001eb104760' => 'zma', 'Zm00001eb148220' => 'zma', 'Zm00001eb259030' => 'zma', 'Zm00001eb289590' => 'zma', 'Zm00001eb420150' => 'zma' ), 'gf_id' => 'HOM05D000968', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000968' ), 'data_identifier' => 'HOM05D000968', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000968', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p31690' => 'bna', 'A03p36040' => 'bna', 'A03p53730' => 'bna', 'A04p01410' => 'bna', 'A05p05420' => 'bna', 'A05p39630' => 'bna', 'A05p39640' => 'bna', 'A09p00970' => 'bna', 'A09p53060' => 'bna', 'A10p31890' => 'bna', 'Aa31LG10G15040' => 'aar', 'Aa31LG1G21090' => 'aar', 'Aa31LG1G26900' => 'aar', 'Aa31LG3G1820' => 'aar', 'Aa31LG5G1100' => 'aar', 'Aa31LG6G4740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2265' => 'aag', 'Actinidia07998' => 'ach', 'Actinidia11266' => 'ach', 'Actinidia12682' => 'ach', 'Actinidia26479' => 'ach', 'Actinidia31406' => 'ach', 'Actinidia32437' => 'ach', 'Actinidia38862' => 'ach', 'Ah.05g174230' => 'amhyb', 'Ah.05g179070' => 'amhyb', 'Ah.05g179090' => 'amhyb', 'Ah.12g059950' => 'amhyb', 'AL3G20480' => 'aly', 'AL4G44520' => 'aly', 'AL5G43110' => 'aly', 'AL6G13890' => 'aly', 'AL6G52620' => 'aly', 'AL7G30830' => 'aly', 'Aqoxy1G00899' => 'aox', 'Aqoxy5G04333' => 'aox', 'Aqoxy7G00641' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3IZ0NN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4EF6AW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W9P8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79GA3M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C43NQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFCU6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G95YVJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCHK29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LU1UG8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX91RN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGB4B1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8DA0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9H7JI' => 'arhy', 'AT3G09320' => 'ath', 'AT3G60800' => 'ath', 'AT4G00840' => 'ath', 'AT4G22750' => 'ath', 'AT5G04270' => 'ath', 'ATR0090G003' => 'atr', 'ATR0559G349' => 'atr', 'ATR0680G261' => 'atr', 'ATR0810G048' => 'atr', 'Atru.chr12.831' => 'acertr', 'Atru.chr5.303' => 'acertr', 'Atru.chr5.748' => 'acertr', 'Atru.chr8.1999' => 'acertr', 'Atru.chr9.1436' => 'acertr', 'AUR62004211' => 'cqu', 'AUR62004548' => 'cqu', 'AUR62013637' => 'cqu', 'AUR62022662' => 'cqu', 'AUR62025777' => 'cqu', 'AUR62042386' => 'cqu', 'BcaB01g02310' => 'bca', 'BcaB01g06062' => 'bca', 'BcaB02g08975' => 'bca', 'BcaB02g08980' => 'bca', 'BcaC01g04228' => 'bca', 'BcaC01g06830' => 'bca', 'BcaC02g10186' => 'bca', 'BcaC02g12214' => 'bca', 'BcaC04g24101' => 'bca', 'BcaC05g29520' => 'bca', 'BcaC05g29661' => 'bca', 'BcaC06g32130' => 'bca', 'BcaC06g32131' => 'bca', 'BcaC07g40601' => 'bca', 'BcaC07g42641' => 'bca', 'BcaNung01038' => 'bca', 'BcaNung01676' => 'bca', 'BcaNung02480' => 'bca', 'BcaNung07376' => 'bca', 'BolC3t16146H' => 'bol', 'BolC3t16637H' => 'bol', 'BolC4t22257H' => 'bol', 'BolC4t24728H' => 'bol', 'BolC5t34517H' => 'bol', 'BolC7t45703H' => 'bol', 'BolC8t51166H' => 'bol', 'BolC9t53038H' => 'bol', 'BolC9t60000H' => 'bol', 'BraA01t01345Z' => 'bra', 'BraA01t01346Z' => 'bra', 'BraA01t01348Z' => 'bra', 'BraA03t12347Z' => 'bra', 'BraA03t12775Z' => 'bra', 'BraA03t14439Z' => 'bra', 'BraA04t15860Z' => 'bra', 'BraA05t19511Z' => 'bra', 'BraA05t22746Z' => 'bra', 'BraA09t35767Z' => 'bra', 'BraA09t40732Z' => 'bra', 'BraA10t45233Z' => 'bra', 'C03p38720' => 'bna', 'C03p43680' => 'bna', 'C04p06350' => 'bna', 'C04p31800' => 'bna', 'C05p58680' => 'bna', 'C07p52110' => 'bna', 'C08p35760' => 'bna', 'C09p01050' => 'bna', 'C09p72600' => 'bna', 'CAN.G106.2' => 'can', 'CAN.G1482.1' => 'can', 'CAN.G324.12' => 'can', 'CAN.G388.20' => 'can', 'CAN.G412.7' => 'can', 'CAN.G694.32' => 'can', 'CAN.G92.12' => 'can', 'CANSAT11G2353' => 'cansat', 'CANSAT21G1398' => 'cansat', 'CANSAT56G2456' => 'cansat', 'CANSAT56G3031' => 'cansat', 'CANSAT56G4539' => 'cansat', 'CARHR083680' => 'chi', 'CARHR171190' => 'chi', 'CARHR209010' => 'chi', 'CARHR229680' => 'chi', 'CARHR249490' => 'chi', 'Carub.0003s0844' => 'cru', 'Carub.0005s2755' => 'cru', 'Carub.0006s0322' => 'cru', 'Carub.0006s3586' => 'cru', 'Carub.0007s1855' => 'cru', 'Ca_07808_v3' => 'car', 'Ca_09535_v3' => 'car', 'Ca_10548_v3' => 'car', 'Ca_19913_v3' => 'car', 'Ca_19916_v3' => 'car', 'Ca_19975_v3' => 'car', 'CBR_g22876' => 'cbr', 'CBR_g22879' => 'cbr', 'CBR_g38491' => 'cbr', 'CBR_g54185' => 'cbr', 'CBR_g54190' => 'cbr', 'Cc02_g11020' => 'ccan', 'Cc02_g23920' => 'ccan', 'Cc02_g39860' => 'ccan', 'Cc02_g39870' => 'ccan', 'Cc03_g06760' => 'ccan', 'Cc06_g02450' => 'ccan', 'Cc09_g09450' => 'ccan', 'CDE02G1959' => 'cde', 'CDE04G0600' => 'cde', 'CDE07G1996' => 'cde', 'CDE07G2078' => 'cde', 'CDE11G0611' => 'cde', 'Cfa001683' => 'cfa', 'Cfa001734' => 'cfa', 'Cfa001737' => 'cfa', 'Cfa003751' => 'cfa', 'Cfa012019' => 'cfa', 'Cfa017353' => 'cfa', 'Cfa017732' => 'cfa', 'Cfa022464' => 'cfa', 'Ciclev10012400m.g' => 'ccl', 'Ciclev10021242m.g' => 'ccl', 'Ciclev10021302m.g' => 'ccl', 'Ciclev10021463m.g' => 'ccl', 'Ciclev10032359m.g' => 'ccl', 'CiPaw.01G081000' => 'cil', 'CiPaw.01G262500' => 'cil', 'CiPaw.01G269800' => 'cil', 'CiPaw.02G168400' => 'cil', 'CiPaw.05G119500' => 'cil', 'CiPaw.11G147300' => 'cil', 'ClCG01G003630' => 'cla', 'ClCG05G000510' => 'cla', 'ClCG05G002300' => 'cla', 'ClCG08G007650' => 'cla', 'ClCG10G021250' => 'cla', 'COL.COLO4_06218' => 'col', 'COL.COLO4_12538' => 'col', 'COL.COLO4_14775' => 'col', 'COL.COLO4_23875' => 'col', 'Cpa.g.sc141.16' => 'cpa', 'Cpa.g.sc169.16' => 'cpa', 'Cpa.g.sc244.4' => 'cpa', 'Cpa.g.sc244.5' => 'cpa', 'Cpa.g.sc29.87' => 'cpa', 'Cpa.g.sc53.115' => 'cpa', 'Cre03.g207502' => 'cre', 'Cre06.g277000' => 'cre', 'Cre09.g394050' => 'cre', 'CsaV3_3G007680' => 'csa', 'CsaV3_3G009710' => 'csa', 'CsaV3_3G034790' => 'csa', 'CsaV3_5G003750' => 'csa', 'CsaV3_6G036620' => 'csa', 'CSS0002288' => 'camsi', 'CSS0011250' => 'camsi', 'CSS0021619' => 'camsi', 'CSS0046701' => 'camsi', 'DCAR_006420' => 'dca', 'DCAR_006865' => 'dca', 'DCAR_008558' => 'dca', 'DCAR_028754' => 'dca', 'DCAR_028755' => 'dca', 'Dinv31218' => 'din', 'Dinv32371' => 'din', 'Dinv34250' => 'din', 'Dinv37156' => 'din', 'Dinv43704' => 'din', 'Duzib093G1811' => 'dzi', 'Duzib106G1622' => 'dzi', 'Duzib114G0504' => 'dzi', 'Duzib128G0338' => 'dzi', 'Duzib128G1577' => 'dzi', 'Duzib133G0104' => 'dzi', 'Duzib133G1080' => 'dzi', 'Duzib138G0324' => 'dzi', 'Duzib138G0394' => 'dzi', 'Duzib205G0122' => 'dzi', 'Duzib268G1020' => 'dzi', 'Duzib268G1359' => 'dzi', 'ECA232G3929' => 'eca', 'ECA236G2210' => 'eca', 'ECA236G2287' => 'eca', 'ECA240G4568' => 'eca', 'ECA247G0894' => 'eca', 'EL10Ac1g00200' => 'bvu', 'EL10Ac1g00886' => 'bvu', 'EL10As1g23091' => 'bvu', 'EL10As1g23092' => 'bvu', 'Eucgr.A01284' => 'egr', 'Eucgr.A01285' => 'egr', 'Eucgr.D02456' => 'egr', 'Eucgr.E00018' => 'egr', 'Eucgr.E01439' => 'egr', 'Eucgr.G02859' => 'egr', 'FAN01G0168' => 'fan', 'FAN01G0453' => 'fan', 'FAN01G2761' => 'fan', 'FAN02G1239' => 'fan', 'FAN03G0645' => 'fan', 'FAN03G2707' => 'fan', 'FAN03G2978' => 'fan', 'FAN04G0227' => 'fan', 'FAN06G0091' => 'fan', 'FAN06G1418' => 'fan', 'FAN06G1512' => 'fan', 'FAN06G1986' => 'fan', 'FAN06G2905' => 'fan', 'FAN06G4325' => 'fan', 'FAN08G0033' => 'fan', 'FAN09G0642' => 'fan', 'FAN10G1763' => 'fan', 'FAN10G2026' => 'fan', 'FAN10G2513' => 'fan', 'FAN10G3402' => 'fan', 'FAN10G3564' => 'fan', 'FAN10G3987' => 'fan', 'FAN13G1490' => 'fan', 'FAN14G5857' => 'fan', 'FAN18G1188' => 'fan', 'FvH4_5g00750' => 'fve', 'FvH4_6g13410' => 'fve', 'FvH4_7g11740' => 'fve', 'FvH4_7g17410' => 'fve', 'FvH4_7g18860' => 'fve', 'Glyma.01G099100' => 'gma', 'Glyma.01G142300' => 'gma', 'Glyma.03G025500' => 'gma', 'Glyma.03G069700' => 'gma', 'Glyma.03G260000' => 'gma', 'Glyma.09G269800' => 'gma', 'Glyma.10G208700' => 'gma', 'Glyma.18G220400' => 'gma', 'Glyma.20G182000' => 'gma', 'Gohir.A01G221726' => 'ghi', 'Gohir.A07G134600' => 'ghi', 'Gohir.A07G146000' => 'ghi', 'Gohir.A08G173900' => 'ghi', 'Gohir.A09G194900' => 'ghi', 'Gohir.A10G204100' => 'ghi', 'Gohir.A11G080600' => 'ghi', 'Gohir.A11G327500' => 'ghi', 'Gohir.A12G101800' => 'ghi', 'Gohir.D01G211200' => 'ghi', 'Gohir.D07G139200' => 'ghi', 'Gohir.D07G152100' => 'ghi', 'Gohir.D08G192600' => 'ghi', 'Gohir.D09G189200' => 'ghi', 'Gohir.D10G212000' => 'ghi', 'Gohir.D11G085200' => 'ghi', 'Gohir.D11G346400' => 'ghi', 'Gohir.D12G104800' => 'ghi', 'Gorai.001G151300' => 'gra', 'Gorai.001G174100' => 'gra', 'Gorai.002G257000' => 'gra', 'Gorai.004G202600' => 'gra', 'Gorai.007G090900' => 'gra', 'Gorai.007G376700' => 'gra', 'Gorai.008G114100' => 'gra', 'Gorai.011G237900' => 'gra', 'GSVIVG01005450001' => 'vvi', 'GSVIVG01016232001' => 'vvi', 'GSVIVG01026157001' => 'vvi', 'GSVIVG01027419001' => 'vvi', 'GSVIVG01027631001' => 'vvi', 'GSVIVG01034143001' => 'vvi', 'HanXRQChr03g0093921' => 'han', 'HanXRQChr04g0120001' => 'han', 'HanXRQChr04g0122561' => 'han', 'HanXRQChr09g0246851' => 'han', 'HanXRQChr10g0293311' => 'han', 'HanXRQChr13g0425231' => 'han', 'HanXRQChr16g0532571' => 'han', 'Haze_09050' => 'cav', 'Haze_15715' => 'cav', 'Haze_15716' => 'cav', 'Haze_16803' => 'cav', 'Haze_16850' => 'cav', 'Hma1.2p1_0301F.1_g118655' => 'hma', 'Hma1.2p1_0309F.1_g120590' => 'hma', 'Hma1.2p1_0936F.1_g238900' => 'hma', 'Hma1.2p1_3552F.1_g336740' => 'hma', 'HPP92_003520' => 'vpl', 'HPP92_006628' => 'vpl', 'HPP92_006645' => 'vpl', 'HPP92_014669' => 'vpl', 'HPP92_015077' => 'vpl', 'Hund16742' => 'sun', 'Hund17022' => 'sun', 'Lalb_Chr02g0152131' => 'lal', 'Lalb_Chr05g0225371' => 'lal', 'Lalb_Chr07g0189841' => 'lal', 'Lalb_Chr07g0192961' => 'lal', 'Lalb_Chr12g0208221' => 'lal', 'Lalb_Chr13g0291211' => 'lal', 'Lalb_Chr13g0291781' => 'lal', 'Lalb_Chr18g0044651' => 'lal', 'Lalb_Chr21g0313731' => 'lal', 'Lj1g0022533' => 'lja', 'Lj2A18T50' => 'lonja', 'Lj2A92G93' => 'lonja', 'Lj3A965T73' => 'lonja', 'Lj3g0000673' => 'lja', 'Lj3g0002666' => 'lja', 'Lj4g0016985' => 'lja', 'Lj5g0003625' => 'lja', 'Lj7A529G36' => 'lonja', 'Lj9A569T49' => 'lonja', 'Lj9A604T63' => 'lonja', 'Lsat_1_v5_gn_3_132060' => 'lsa', 'Lsat_1_v5_gn_4_68941' => 'lsa', 'Lsat_1_v5_gn_5_95580' => 'lsa', 'Lsat_1_v5_gn_7_161' => 'lsa', 'Lsat_1_v5_gn_7_7041' => 'lsa', 'Lsat_1_v5_gn_9_33481' => 'lsa', 'Lsat_1_v5_gn_9_68260' => 'lsa', 'Manes.01G073100' => 'mes', 'Manes.01G266300' => 'mes', 'Manes.02G033300' => 'mes', 'Manes.05G017900' => 'mes', 'Manes.05G046100' => 'mes', 'Manes.08G080900' => 'mes', 'Manes.10G049400' => 'mes', 'Mapoly0009s0186' => 'mpo', 'Mapoly0036s0118' => 'mpo', 'Mapoly0101s0046' => 'mpo', 'MBI04_g30218_MAGBIO' => 'mbi', 'MBI04_g35564_MAGBIO' => 'mbi', 'MBI12_g34011_MAGBIO' => 'mbi', 'MBI14_g04655_MAGBIO' => 'mbi', 'MCO07G653' => 'mco', 'MCO10G173' => 'mco', 'MD01G1087100' => 'mdo', 'MD01G1104200' => 'mdo', 'MD02G1205100' => 'mdo', 'MD04G1079200' => 'mdo', 'MD04G1131400' => 'mdo', 'MD07G1121600' => 'mdo', 'MD07G1157300' => 'mdo', 'MD07G1171000' => 'mdo', 'MD12G1144500' => 'mdo', 'Medtr1g094610' => 'mtr', 'Medtr4g021795' => 'mtr', 'Medtr4g023760' => 'mtr', 'Medtr7g118050' => 'mtr', 'MELO3C005582.2' => 'cme', 'MELO3C005989.2' => 'cme', 'MELO3C006192.2' => 'cme', 'MELO3C009248.2' => 'cme', 'MELO3C019817.2' => 'cme', 'Migut.B01625' => 'egut', 'Migut.B01915' => 'egut', 'Migut.F01721' => 'egut', 'Migut.J00314' => 'egut', 'MSTRG.20742' => 'ama', 'MSTRG.8134' => 'ama', 'Nitab4.5_0000096g0010' => 'nta', 'Nitab4.5_0000202g0030' => 'nta', 'Nitab4.5_0000216g0370' => 'nta', 'Nitab4.5_0000457g0230' => 'nta', 'Nitab4.5_0001702g0170' => 'nta', 'Nitab4.5_0003607g0010' => 'nta', 'Nitab4.5_0004917g0020' => 'nta', 'Nitab4.5_0007059g0010' => 'nta', 'Nitab4.5_0007184g0010' => 'nta', 'Nitab4.5_0007346g0020' => 'nta', 'Nn1g00410' => 'nnu', 'Nn1g01252' => 'nnu', 'Nn2g11168' => 'nnu', 'Nn2g13403' => 'nnu', 'Nn2g13760' => 'nnu', 'Nn4g26380' => 'nnu', 'Oeu000806.2' => 'oeu', 'Oeu005788.1' => 'oeu', 'Oeu006900.3' => 'oeu', 'Oeu007797.1' => 'oeu', 'Oeu011932.1' => 'oeu', 'Oeu022739.1' => 'oeu', 'Oeu037918.1' => 'oeu', 'Oeu055490.2' => 'oeu', 'Os01g0844400' => 'osa', 'Os02g0819100' => 'osa', 'Os03g0804300' => 'osa', 'Os05g0458000' => 'osa', 'Os07g0467800' => 'osa', 'Os12g0602200' => 'osa', 'Peaxi162Scf00013g03444' => 'pax', 'Peaxi162Scf00094g01120' => 'pax', 'Peaxi162Scf00191g01211' => 'pax', 'Peaxi162Scf00238g01110' => 'pax', 'Peaxi162Scf00330g00719' => 'pax', 'Peaxi162Scf00627g00018' => 'pax', 'PGR031G2686' => 'pgr', 'PGR042G0809' => 'pgr', 'PGR142G0193' => 'pgr', 'PGSC0003DMG400011066' => 'stu', 'PGSC0003DMG400012041' => 'stu', 'PGSC0003DMG400013678' => 'stu', 'PGSC0003DMG400023477' => 'stu', 'PGSC0003DMG400025956' => 'stu', 'PGSC0003DMG401019151' => 'stu', 'Phvul.006G116400' => 'pvu', 'Phvul.007G097300' => 'pvu', 'Phvul.010G015000' => 'pvu', 'Phvul.010G083900' => 'pvu', 'Potri.001G117100' => 'ptr', 'Potri.002G147300' => 'ptr', 'Potri.003G115600' => 'ptr', 'Potri.006G087400' => 'ptr', 'Potri.010G226100' => 'ptr', 'Potri.014G069200' => 'ptr', 'Potri.014G104000' => 'ptr', 'Potri.016G100200' => 'ptr', 'Pp3c10_20450' => 'ppa', 'Pp3c1_42400' => 'ppa', 'Pp3c3_24390' => 'ppa', 'Pp3c3_2860' => 'ppa', 'PRCOL_00003193' => 'pco', 'Prupe.2G144500' => 'ppe', 'Prupe.2G195700' => 'ppe', 'Prupe.2G209800' => 'ppe', 'Prupe.5G080000' => 'ppe', 'Prupe.6G257900' => 'ppe', 'Psat3g001160' => 'psa', 'Psat6g181880' => 'psa', 'Psat7g233720' => 'psa', 'PSO063G7587' => 'pso', 'PSO339G2145' => 'pso', 'PSO339G3369' => 'pso', 'PSO478G2747' => 'pso', 'PSO513G0140' => 'pso', 'PSO782G1614' => 'pso', 'PSO782G4889' => 'pso', 'PSO782G5485' => 'pso', 'PSO801G0241' => 'pso', 'QL07p048854' => 'qlo', 'QL08p046745' => 'qlo', 'QL08p052606' => 'qlo', 'QL08p053414' => 'qlo', 'QL08p054868' => 'qlo', 'RcHm_v2.0_Chr1g0350251' => 'rch', 'RcHm_v2.0_Chr1g0360851' => 'rch', 'RcHm_v2.0_Chr1g0362791' => 'rch', 'RcHm_v2.0_Chr3g0466281' => 'rch', 'RcHm_v2.0_Chr7g0201481' => 'rch', 'Rhsim01G0148600' => 'rsi', 'Rhsim05G0194400' => 'rsi', 'Rhsim07G0000700' => 'rsi', 'Rhsim07G0000800' => 'rsi', 'Rhsim07G0027900' => 'rsi', 'Rhsim09G0149500' => 'rsi', 'RhsimUnG0186900' => 'rsi', 'Sabra01G0089900' => 'sbr', 'Sabra02G0114700' => 'sbr', 'Sabra02G0116300' => 'sbr', 'Sabra03G0080100' => 'sbr', 'Sabra08G0024300' => 'sbr', 'Sabra10G0174300' => 'sbr', 'Sabra14G0048900' => 'sbr', 'Sabra14G0076500' => 'sbr', 'SalBow5G2513' => 'sbo', 'Sc01g0002300' => 'sci', 'Sc01g0004450' => 'sci', 'Sc06g0001680' => 'sci', 'Sc23g0003580' => 'sci', 'Sed0000913' => 'sed', 'Sed0001655' => 'sed', 'Sed0007745' => 'sed', 'Sed0010951' => 'sed', 'Sed0017599' => 'sed', 'Sed0021405' => 'sed', 'Sed0022810' => 'sed', 'SEGI_07099' => 'sgi', 'SEGI_11931' => 'sgi', 'SEGI_13187' => 'sgi', 'SEGI_29958' => 'sgi', 'SEGI_36351' => 'sgi', 'SGA_v2.0_scaffold126G33770' => 'sas', 'SGA_v2.0_scaffold153G37003' => 'sas', 'SGA_v2.0_scaffold2G01359' => 'sas', 'SGA_v2.0_scaffold5G03064' => 'sas', 'SGA_v2.0_scaffold95G28903' => 'sas', 'SHI12701' => 'shi', 'SHI26410' => 'shi', 'SHI38997' => 'shi', 'SHI53759' => 'shi', 'SHI53886' => 'shi', 'SHI54714' => 'shi', 'SMO011G0041' => 'smo', 'SMO146G0251' => 'smo', 'SMO160G0004' => 'smo', 'SMO174G0057' => 'smo', 'SMO244G0089' => 'smo', 'SMO296G0011' => 'smo', 'Solyc01g091280.3' => 'sly', 'Solyc05g047610.3' => 'sly', 'Solyc05g047640.3' => 'sly', 'Solyc05g055630.3' => 'sly', 'Solyc10g018160.2' => 'sly', 'Solyc10g084820.2' => 'sly', 'Solyc10g086565.2' => 'sly', 'Sopen01g037030' => 'spe', 'Sopen05g027920' => 'spe', 'Sopen05g034070' => 'spe', 'Sopen10g007260' => 'spe', 'Sopen10g034260' => 'spe', 'Sopen10g035950' => 'spe', 'Sp3g07710' => 'spa', 'Sp4g27420' => 'spa', 'Sp5g02450' => 'spa', 'Sp6g01280' => 'spa', 'Sp6g38480' => 'spa', 'Sp7g20780' => 'spa', 'TAR374G1413' => 'tar', 'TAR623G1777' => 'tar', 'TAR629G2370' => 'tar', 'TAR633G1759' => 'tar', 'TAR636G3387' => 'tar', 'THA.LOC104802447' => 'tha', 'THA.LOC104813916' => 'tha', 'THA.LOC104816423' => 'tha', 'THA.LOC104817246' => 'tha', 'THA.LOC104825895' => 'tha', 'Thecc.01G335200' => 'tca', 'Thecc.01G377400' => 'tca', 'Thecc.03G262200' => 'tca', 'Thecc.05G036800' => 'tca', 'Thecc.10G080500' => 'tca', 'Thecc.10G080800' => 'tca', 'Thhalv10001560m.g' => 'esa', 'Thhalv10006120m.g' => 'esa', 'Thhalv10014375m.g' => 'esa', 'Thhalv10021264m.g' => 'esa', 'Thhalv10028856m.g' => 'esa', 'TPR.G1914' => 'tpr', 'TPR.G4757' => 'tpr', 'TPR.G5595' => 'tpr', 'TWI14G0952' => 'twi', 'TWI14G1307' => 'twi', 'TWI38G2143' => 'twi', 'TWI59G0826' => 'twi', 'TWI77G0527' => 'twi', 'TWI81G0150' => 'twi', 'unitig_21.g21018' => 'ugi', 'unitig_26.g9725' => 'ugi', 'unitig_744.g24653' => 'ugi', 'unitig_749.g13778' => 'ugi', 'unitig_899.g15035' => 'ugi', 'vmacro04296' => 'vma', 'vmacro04852' => 'vma', 'vmacro13404' => 'vma', 'vmacro20169' => 'vma', 'vmacro21014' => 'vma', 'VMungo0331G0237' => 'vmu', 'VMungo0331G0706' => 'vmu', 'VMungo0331G1361' => 'vmu', 'VMungo0331G1489' => 'vmu', 'VMungo0540G1037' => 'vmu', 'VMungo0720G2487' => 'vmu', 'VMungo0720G2721' => 'vmu', 'Zm00001eb086860' => 'zma', 'Zm00001eb104760' => 'zma', 'Zm00001eb148220' => 'zma', 'Zm00001eb259030' => 'zma', 'Zm00001eb289590' => 'zma', 'Zm00001eb420150' => 'zma' ) $gf_id = 'HOM05D000968' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000968' ) $data_identifier = 'HOM05D000968' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 19, 'bol' => (int) 9, 'bra' => (int) 12, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 5, 'ccan' => (int) 7, 'cde' => (int) 5, 'cfa' => (int) 8, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 4, 'dca' => (int) 5, 'din' => (int) 5, 'dzi' => (int) 12, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 25, 'fve' => (int) 5, 'gma' => (int) 9, 'ghi' => (int) 18, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 7, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 5, 'sun' => (int) 2, 'lal' => (int) 9, 'lja' => (int) 5, 'lonja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 9, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 2, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 3, 'stu' => (int) 6, 'pvu' => (int) 4, 'ptr' => (int) 8, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 3, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 1, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 5, 'sas' => (int) 5, 'shi' => (int) 6, 'smo' => (int) 6, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 3, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420150' $species_info = array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ) $local_species = 'aar' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000968', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p31690' => 'bna', 'A03p36040' => 'bna', 'A03p53730' => 'bna', 'A04p01410' => 'bna', 'A05p05420' => 'bna', 'A05p39630' => 'bna', 'A05p39640' => 'bna', 'A09p00970' => 'bna', 'A09p53060' => 'bna', 'A10p31890' => 'bna', 'Aa31LG10G15040' => 'aar', 'Aa31LG1G21090' => 'aar', 'Aa31LG1G26900' => 'aar', 'Aa31LG3G1820' => 'aar', 'Aa31LG5G1100' => 'aar', 'Aa31LG6G4740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2265' => 'aag', 'Actinidia07998' => 'ach', 'Actinidia11266' => 'ach', 'Actinidia12682' => 'ach', 'Actinidia26479' => 'ach', 'Actinidia31406' => 'ach', 'Actinidia32437' => 'ach', 'Actinidia38862' => 'ach', 'Ah.05g174230' => 'amhyb', 'Ah.05g179070' => 'amhyb', 'Ah.05g179090' => 'amhyb', 'Ah.12g059950' => 'amhyb', 'AL3G20480' => 'aly', 'AL4G44520' => 'aly', 'AL5G43110' => 'aly', 'AL6G13890' => 'aly', 'AL6G52620' => 'aly', 'AL7G30830' => 'aly', 'Aqoxy1G00899' => 'aox', 'Aqoxy5G04333' => 'aox', 'Aqoxy7G00641' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3IZ0NN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4EF6AW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W9P8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79GA3M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C43NQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFCU6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G95YVJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCHK29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LU1UG8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX91RN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGB4B1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8DA0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9H7JI' => 'arhy', 'AT3G09320' => 'ath', 'AT3G60800' => 'ath', 'AT4G00840' => 'ath', 'AT4G22750' => 'ath', 'AT5G04270' => 'ath', 'ATR0090G003' => 'atr', 'ATR0559G349' => 'atr', 'ATR0680G261' => 'atr', 'ATR0810G048' => 'atr', 'Atru.chr12.831' => 'acertr', 'Atru.chr5.303' => 'acertr', 'Atru.chr5.748' => 'acertr', 'Atru.chr8.1999' => 'acertr', 'Atru.chr9.1436' => 'acertr', 'AUR62004211' => 'cqu', 'AUR62004548' => 'cqu', 'AUR62013637' => 'cqu', 'AUR62022662' => 'cqu', 'AUR62025777' => 'cqu', 'AUR62042386' => 'cqu', 'BcaB01g02310' => 'bca', 'BcaB01g06062' => 'bca', 'BcaB02g08975' => 'bca', 'BcaB02g08980' => 'bca', 'BcaC01g04228' => 'bca', 'BcaC01g06830' => 'bca', 'BcaC02g10186' => 'bca', 'BcaC02g12214' => 'bca', 'BcaC04g24101' => 'bca', 'BcaC05g29520' => 'bca', 'BcaC05g29661' => 'bca', 'BcaC06g32130' => 'bca', 'BcaC06g32131' => 'bca', 'BcaC07g40601' => 'bca', 'BcaC07g42641' => 'bca', 'BcaNung01038' => 'bca', 'BcaNung01676' => 'bca', 'BcaNung02480' => 'bca', 'BcaNung07376' => 'bca', 'BolC3t16146H' => 'bol', 'BolC3t16637H' => 'bol', 'BolC4t22257H' => 'bol', 'BolC4t24728H' => 'bol', 'BolC5t34517H' => 'bol', 'BolC7t45703H' => 'bol', 'BolC8t51166H' => 'bol', 'BolC9t53038H' => 'bol', 'BolC9t60000H' => 'bol', 'BraA01t01345Z' => 'bra', 'BraA01t01346Z' => 'bra', 'BraA01t01348Z' => 'bra', 'BraA03t12347Z' => 'bra', 'BraA03t12775Z' => 'bra', 'BraA03t14439Z' => 'bra', 'BraA04t15860Z' => 'bra', 'BraA05t19511Z' => 'bra', 'BraA05t22746Z' => 'bra', 'BraA09t35767Z' => 'bra', 'BraA09t40732Z' => 'bra', 'BraA10t45233Z' => 'bra', 'C03p38720' => 'bna', 'C03p43680' => 'bna', 'C04p06350' => 'bna', 'C04p31800' => 'bna', 'C05p58680' => 'bna', 'C07p52110' => 'bna', 'C08p35760' => 'bna', 'C09p01050' => 'bna', 'C09p72600' => 'bna', 'CAN.G106.2' => 'can', 'CAN.G1482.1' => 'can', 'CAN.G324.12' => 'can', 'CAN.G388.20' => 'can', 'CAN.G412.7' => 'can', 'CAN.G694.32' => 'can', 'CAN.G92.12' => 'can', 'CANSAT11G2353' => 'cansat', 'CANSAT21G1398' => 'cansat', 'CANSAT56G2456' => 'cansat', 'CANSAT56G3031' => 'cansat', 'CANSAT56G4539' => 'cansat', 'CARHR083680' => 'chi', 'CARHR171190' => 'chi', 'CARHR209010' => 'chi', 'CARHR229680' => 'chi', 'CARHR249490' => 'chi', 'Carub.0003s0844' => 'cru', 'Carub.0005s2755' => 'cru', 'Carub.0006s0322' => 'cru', 'Carub.0006s3586' => 'cru', 'Carub.0007s1855' => 'cru', 'Ca_07808_v3' => 'car', 'Ca_09535_v3' => 'car', 'Ca_10548_v3' => 'car', 'Ca_19913_v3' => 'car', 'Ca_19916_v3' => 'car', 'Ca_19975_v3' => 'car', 'CBR_g22876' => 'cbr', 'CBR_g22879' => 'cbr', 'CBR_g38491' => 'cbr', 'CBR_g54185' => 'cbr', 'CBR_g54190' => 'cbr', 'Cc02_g11020' => 'ccan', 'Cc02_g23920' => 'ccan', 'Cc02_g39860' => 'ccan', 'Cc02_g39870' => 'ccan', 'Cc03_g06760' => 'ccan', 'Cc06_g02450' => 'ccan', 'Cc09_g09450' => 'ccan', 'CDE02G1959' => 'cde', 'CDE04G0600' => 'cde', 'CDE07G1996' => 'cde', 'CDE07G2078' => 'cde', 'CDE11G0611' => 'cde', 'Cfa001683' => 'cfa', 'Cfa001734' => 'cfa', 'Cfa001737' => 'cfa', 'Cfa003751' => 'cfa', 'Cfa012019' => 'cfa', 'Cfa017353' => 'cfa', 'Cfa017732' => 'cfa', 'Cfa022464' => 'cfa', 'Ciclev10012400m.g' => 'ccl', 'Ciclev10021242m.g' => 'ccl', 'Ciclev10021302m.g' => 'ccl', 'Ciclev10021463m.g' => 'ccl', 'Ciclev10032359m.g' => 'ccl', 'CiPaw.01G081000' => 'cil', 'CiPaw.01G262500' => 'cil', 'CiPaw.01G269800' => 'cil', 'CiPaw.02G168400' => 'cil', 'CiPaw.05G119500' => 'cil', 'CiPaw.11G147300' => 'cil', 'ClCG01G003630' => 'cla', 'ClCG05G000510' => 'cla', 'ClCG05G002300' => 'cla', 'ClCG08G007650' => 'cla', 'ClCG10G021250' => 'cla', 'COL.COLO4_06218' => 'col', 'COL.COLO4_12538' => 'col', 'COL.COLO4_14775' => 'col', 'COL.COLO4_23875' => 'col', 'Cpa.g.sc141.16' => 'cpa', 'Cpa.g.sc169.16' => 'cpa', 'Cpa.g.sc244.4' => 'cpa', 'Cpa.g.sc244.5' => 'cpa', 'Cpa.g.sc29.87' => 'cpa', 'Cpa.g.sc53.115' => 'cpa', 'Cre03.g207502' => 'cre', 'Cre06.g277000' => 'cre', 'Cre09.g394050' => 'cre', 'CsaV3_3G007680' => 'csa', 'CsaV3_3G009710' => 'csa', 'CsaV3_3G034790' => 'csa', 'CsaV3_5G003750' => 'csa', 'CsaV3_6G036620' => 'csa', 'CSS0002288' => 'camsi', 'CSS0011250' => 'camsi', 'CSS0021619' => 'camsi', 'CSS0046701' => 'camsi', 'DCAR_006420' => 'dca', 'DCAR_006865' => 'dca', 'DCAR_008558' => 'dca', 'DCAR_028754' => 'dca', 'DCAR_028755' => 'dca', 'Dinv31218' => 'din', 'Dinv32371' => 'din', 'Dinv34250' => 'din', 'Dinv37156' => 'din', 'Dinv43704' => 'din', 'Duzib093G1811' => 'dzi', 'Duzib106G1622' => 'dzi', 'Duzib114G0504' => 'dzi', 'Duzib128G0338' => 'dzi', 'Duzib128G1577' => 'dzi', 'Duzib133G0104' => 'dzi', 'Duzib133G1080' => 'dzi', 'Duzib138G0324' => 'dzi', 'Duzib138G0394' => 'dzi', 'Duzib205G0122' => 'dzi', 'Duzib268G1020' => 'dzi', 'Duzib268G1359' => 'dzi', 'ECA232G3929' => 'eca', 'ECA236G2210' => 'eca', 'ECA236G2287' => 'eca', 'ECA240G4568' => 'eca', 'ECA247G0894' => 'eca', 'EL10Ac1g00200' => 'bvu', 'EL10Ac1g00886' => 'bvu', 'EL10As1g23091' => 'bvu', 'EL10As1g23092' => 'bvu', 'Eucgr.A01284' => 'egr', 'Eucgr.A01285' => 'egr', 'Eucgr.D02456' => 'egr', 'Eucgr.E00018' => 'egr', 'Eucgr.E01439' => 'egr', 'Eucgr.G02859' => 'egr', 'FAN01G0168' => 'fan', 'FAN01G0453' => 'fan', 'FAN01G2761' => 'fan', 'FAN02G1239' => 'fan', 'FAN03G0645' => 'fan', 'FAN03G2707' => 'fan', 'FAN03G2978' => 'fan', 'FAN04G0227' => 'fan', 'FAN06G0091' => 'fan', 'FAN06G1418' => 'fan', 'FAN06G1512' => 'fan', 'FAN06G1986' => 'fan', 'FAN06G2905' => 'fan', 'FAN06G4325' => 'fan', 'FAN08G0033' => 'fan', 'FAN09G0642' => 'fan', 'FAN10G1763' => 'fan', 'FAN10G2026' => 'fan', 'FAN10G2513' => 'fan', 'FAN10G3402' => 'fan', 'FAN10G3564' => 'fan', 'FAN10G3987' => 'fan', 'FAN13G1490' => 'fan', 'FAN14G5857' => 'fan', 'FAN18G1188' => 'fan', 'FvH4_5g00750' => 'fve', 'FvH4_6g13410' => 'fve', 'FvH4_7g11740' => 'fve', 'FvH4_7g17410' => 'fve', 'FvH4_7g18860' => 'fve', 'Glyma.01G099100' => 'gma', 'Glyma.01G142300' => 'gma', 'Glyma.03G025500' => 'gma', 'Glyma.03G069700' => 'gma', 'Glyma.03G260000' => 'gma', 'Glyma.09G269800' => 'gma', 'Glyma.10G208700' => 'gma', 'Glyma.18G220400' => 'gma', 'Glyma.20G182000' => 'gma', 'Gohir.A01G221726' => 'ghi', 'Gohir.A07G134600' => 'ghi', 'Gohir.A07G146000' => 'ghi', 'Gohir.A08G173900' => 'ghi', 'Gohir.A09G194900' => 'ghi', 'Gohir.A10G204100' => 'ghi', 'Gohir.A11G080600' => 'ghi', 'Gohir.A11G327500' => 'ghi', 'Gohir.A12G101800' => 'ghi', 'Gohir.D01G211200' => 'ghi', 'Gohir.D07G139200' => 'ghi', 'Gohir.D07G152100' => 'ghi', 'Gohir.D08G192600' => 'ghi', 'Gohir.D09G189200' => 'ghi', 'Gohir.D10G212000' => 'ghi', 'Gohir.D11G085200' => 'ghi', 'Gohir.D11G346400' => 'ghi', 'Gohir.D12G104800' => 'ghi', 'Gorai.001G151300' => 'gra', 'Gorai.001G174100' => 'gra', 'Gorai.002G257000' => 'gra', 'Gorai.004G202600' => 'gra', 'Gorai.007G090900' => 'gra', 'Gorai.007G376700' => 'gra', 'Gorai.008G114100' => 'gra', 'Gorai.011G237900' => 'gra', 'GSVIVG01005450001' => 'vvi', 'GSVIVG01016232001' => 'vvi', 'GSVIVG01026157001' => 'vvi', 'GSVIVG01027419001' => 'vvi', 'GSVIVG01027631001' => 'vvi', 'GSVIVG01034143001' => 'vvi', 'HanXRQChr03g0093921' => 'han', 'HanXRQChr04g0120001' => 'han', 'HanXRQChr04g0122561' => 'han', 'HanXRQChr09g0246851' => 'han', 'HanXRQChr10g0293311' => 'han', 'HanXRQChr13g0425231' => 'han', 'HanXRQChr16g0532571' => 'han', 'Haze_09050' => 'cav', 'Haze_15715' => 'cav', 'Haze_15716' => 'cav', 'Haze_16803' => 'cav', 'Haze_16850' => 'cav', 'Hma1.2p1_0301F.1_g118655' => 'hma', 'Hma1.2p1_0309F.1_g120590' => 'hma', 'Hma1.2p1_0936F.1_g238900' => 'hma', 'Hma1.2p1_3552F.1_g336740' => 'hma', 'HPP92_003520' => 'vpl', 'HPP92_006628' => 'vpl', 'HPP92_006645' => 'vpl', 'HPP92_014669' => 'vpl', 'HPP92_015077' => 'vpl', 'Hund16742' => 'sun', 'Hund17022' => 'sun', 'Lalb_Chr02g0152131' => 'lal', 'Lalb_Chr05g0225371' => 'lal', 'Lalb_Chr07g0189841' => 'lal', 'Lalb_Chr07g0192961' => 'lal', 'Lalb_Chr12g0208221' => 'lal', 'Lalb_Chr13g0291211' => 'lal', 'Lalb_Chr13g0291781' => 'lal', 'Lalb_Chr18g0044651' => 'lal', 'Lalb_Chr21g0313731' => 'lal', 'Lj1g0022533' => 'lja', 'Lj2A18T50' => 'lonja', 'Lj2A92G93' => 'lonja', 'Lj3A965T73' => 'lonja', 'Lj3g0000673' => 'lja', 'Lj3g0002666' => 'lja', 'Lj4g0016985' => 'lja', 'Lj5g0003625' => 'lja', 'Lj7A529G36' => 'lonja', 'Lj9A569T49' => 'lonja', 'Lj9A604T63' => 'lonja', 'Lsat_1_v5_gn_3_132060' => 'lsa', 'Lsat_1_v5_gn_4_68941' => 'lsa', 'Lsat_1_v5_gn_5_95580' => 'lsa', 'Lsat_1_v5_gn_7_161' => 'lsa', 'Lsat_1_v5_gn_7_7041' => 'lsa', 'Lsat_1_v5_gn_9_33481' => 'lsa', 'Lsat_1_v5_gn_9_68260' => 'lsa', 'Manes.01G073100' => 'mes', 'Manes.01G266300' => 'mes', 'Manes.02G033300' => 'mes', 'Manes.05G017900' => 'mes', 'Manes.05G046100' => 'mes', 'Manes.08G080900' => 'mes', 'Manes.10G049400' => 'mes', 'Mapoly0009s0186' => 'mpo', 'Mapoly0036s0118' => 'mpo', 'Mapoly0101s0046' => 'mpo', 'MBI04_g30218_MAGBIO' => 'mbi', 'MBI04_g35564_MAGBIO' => 'mbi', 'MBI12_g34011_MAGBIO' => 'mbi', 'MBI14_g04655_MAGBIO' => 'mbi', 'MCO07G653' => 'mco', 'MCO10G173' => 'mco', 'MD01G1087100' => 'mdo', 'MD01G1104200' => 'mdo', 'MD02G1205100' => 'mdo', 'MD04G1079200' => 'mdo', 'MD04G1131400' => 'mdo', 'MD07G1121600' => 'mdo', 'MD07G1157300' => 'mdo', 'MD07G1171000' => 'mdo', 'MD12G1144500' => 'mdo', 'Medtr1g094610' => 'mtr', 'Medtr4g021795' => 'mtr', 'Medtr4g023760' => 'mtr', 'Medtr7g118050' => 'mtr', 'MELO3C005582.2' => 'cme', 'MELO3C005989.2' => 'cme', 'MELO3C006192.2' => 'cme', 'MELO3C009248.2' => 'cme', 'MELO3C019817.2' => 'cme', 'Migut.B01625' => 'egut', 'Migut.B01915' => 'egut', 'Migut.F01721' => 'egut', 'Migut.J00314' => 'egut', 'MSTRG.20742' => 'ama', 'MSTRG.8134' => 'ama', 'Nitab4.5_0000096g0010' => 'nta', 'Nitab4.5_0000202g0030' => 'nta', 'Nitab4.5_0000216g0370' => 'nta', 'Nitab4.5_0000457g0230' => 'nta', 'Nitab4.5_0001702g0170' => 'nta', 'Nitab4.5_0003607g0010' => 'nta', 'Nitab4.5_0004917g0020' => 'nta', 'Nitab4.5_0007059g0010' => 'nta', 'Nitab4.5_0007184g0010' => 'nta', 'Nitab4.5_0007346g0020' => 'nta', 'Nn1g00410' => 'nnu', 'Nn1g01252' => 'nnu', 'Nn2g11168' => 'nnu', 'Nn2g13403' => 'nnu', 'Nn2g13760' => 'nnu', 'Nn4g26380' => 'nnu', 'Oeu000806.2' => 'oeu', 'Oeu005788.1' => 'oeu', 'Oeu006900.3' => 'oeu', 'Oeu007797.1' => 'oeu', 'Oeu011932.1' => 'oeu', 'Oeu022739.1' => 'oeu', 'Oeu037918.1' => 'oeu', 'Oeu055490.2' => 'oeu', 'Os01g0844400' => 'osa', 'Os02g0819100' => 'osa', 'Os03g0804300' => 'osa', 'Os05g0458000' => 'osa', 'Os07g0467800' => 'osa', 'Os12g0602200' => 'osa', 'Peaxi162Scf00013g03444' => 'pax', 'Peaxi162Scf00094g01120' => 'pax', 'Peaxi162Scf00191g01211' => 'pax', 'Peaxi162Scf00238g01110' => 'pax', 'Peaxi162Scf00330g00719' => 'pax', 'Peaxi162Scf00627g00018' => 'pax', 'PGR031G2686' => 'pgr', 'PGR042G0809' => 'pgr', 'PGR142G0193' => 'pgr', 'PGSC0003DMG400011066' => 'stu', 'PGSC0003DMG400012041' => 'stu', 'PGSC0003DMG400013678' => 'stu', 'PGSC0003DMG400023477' => 'stu', 'PGSC0003DMG400025956' => 'stu', 'PGSC0003DMG401019151' => 'stu', 'Phvul.006G116400' => 'pvu', 'Phvul.007G097300' => 'pvu', 'Phvul.010G015000' => 'pvu', 'Phvul.010G083900' => 'pvu', 'Potri.001G117100' => 'ptr', 'Potri.002G147300' => 'ptr', 'Potri.003G115600' => 'ptr', 'Potri.006G087400' => 'ptr', 'Potri.010G226100' => 'ptr', 'Potri.014G069200' => 'ptr', 'Potri.014G104000' => 'ptr', 'Potri.016G100200' => 'ptr', 'Pp3c10_20450' => 'ppa', 'Pp3c1_42400' => 'ppa', 'Pp3c3_24390' => 'ppa', 'Pp3c3_2860' => 'ppa', 'PRCOL_00003193' => 'pco', 'Prupe.2G144500' => 'ppe', 'Prupe.2G195700' => 'ppe', 'Prupe.2G209800' => 'ppe', 'Prupe.5G080000' => 'ppe', 'Prupe.6G257900' => 'ppe', 'Psat3g001160' => 'psa', 'Psat6g181880' => 'psa', 'Psat7g233720' => 'psa', 'PSO063G7587' => 'pso', 'PSO339G2145' => 'pso', 'PSO339G3369' => 'pso', 'PSO478G2747' => 'pso', 'PSO513G0140' => 'pso', 'PSO782G1614' => 'pso', 'PSO782G4889' => 'pso', 'PSO782G5485' => 'pso', 'PSO801G0241' => 'pso', 'QL07p048854' => 'qlo', 'QL08p046745' => 'qlo', 'QL08p052606' => 'qlo', 'QL08p053414' => 'qlo', 'QL08p054868' => 'qlo', 'RcHm_v2.0_Chr1g0350251' => 'rch', 'RcHm_v2.0_Chr1g0360851' => 'rch', 'RcHm_v2.0_Chr1g0362791' => 'rch', 'RcHm_v2.0_Chr3g0466281' => 'rch', 'RcHm_v2.0_Chr7g0201481' => 'rch', 'Rhsim01G0148600' => 'rsi', 'Rhsim05G0194400' => 'rsi', 'Rhsim07G0000700' => 'rsi', 'Rhsim07G0000800' => 'rsi', 'Rhsim07G0027900' => 'rsi', 'Rhsim09G0149500' => 'rsi', 'RhsimUnG0186900' => 'rsi', 'Sabra01G0089900' => 'sbr', 'Sabra02G0114700' => 'sbr', 'Sabra02G0116300' => 'sbr', 'Sabra03G0080100' => 'sbr', 'Sabra08G0024300' => 'sbr', 'Sabra10G0174300' => 'sbr', 'Sabra14G0048900' => 'sbr', 'Sabra14G0076500' => 'sbr', 'SalBow5G2513' => 'sbo', 'Sc01g0002300' => 'sci', 'Sc01g0004450' => 'sci', 'Sc06g0001680' => 'sci', 'Sc23g0003580' => 'sci', 'Sed0000913' => 'sed', 'Sed0001655' => 'sed', 'Sed0007745' => 'sed', 'Sed0010951' => 'sed', 'Sed0017599' => 'sed', 'Sed0021405' => 'sed', 'Sed0022810' => 'sed', 'SEGI_07099' => 'sgi', 'SEGI_11931' => 'sgi', 'SEGI_13187' => 'sgi', 'SEGI_29958' => 'sgi', 'SEGI_36351' => 'sgi', 'SGA_v2.0_scaffold126G33770' => 'sas', 'SGA_v2.0_scaffold153G37003' => 'sas', 'SGA_v2.0_scaffold2G01359' => 'sas', 'SGA_v2.0_scaffold5G03064' => 'sas', 'SGA_v2.0_scaffold95G28903' => 'sas', 'SHI12701' => 'shi', 'SHI26410' => 'shi', 'SHI38997' => 'shi', 'SHI53759' => 'shi', 'SHI53886' => 'shi', 'SHI54714' => 'shi', 'SMO011G0041' => 'smo', 'SMO146G0251' => 'smo', 'SMO160G0004' => 'smo', 'SMO174G0057' => 'smo', 'SMO244G0089' => 'smo', 'SMO296G0011' => 'smo', 'Solyc01g091280.3' => 'sly', 'Solyc05g047610.3' => 'sly', 'Solyc05g047640.3' => 'sly', 'Solyc05g055630.3' => 'sly', 'Solyc10g018160.2' => 'sly', 'Solyc10g084820.2' => 'sly', 'Solyc10g086565.2' => 'sly', 'Sopen01g037030' => 'spe', 'Sopen05g027920' => 'spe', 'Sopen05g034070' => 'spe', 'Sopen10g007260' => 'spe', 'Sopen10g034260' => 'spe', 'Sopen10g035950' => 'spe', 'Sp3g07710' => 'spa', 'Sp4g27420' => 'spa', 'Sp5g02450' => 'spa', 'Sp6g01280' => 'spa', 'Sp6g38480' => 'spa', 'Sp7g20780' => 'spa', 'TAR374G1413' => 'tar', 'TAR623G1777' => 'tar', 'TAR629G2370' => 'tar', 'TAR633G1759' => 'tar', 'TAR636G3387' => 'tar', 'THA.LOC104802447' => 'tha', 'THA.LOC104813916' => 'tha', 'THA.LOC104816423' => 'tha', 'THA.LOC104817246' => 'tha', 'THA.LOC104825895' => 'tha', 'Thecc.01G335200' => 'tca', 'Thecc.01G377400' => 'tca', 'Thecc.03G262200' => 'tca', 'Thecc.05G036800' => 'tca', 'Thecc.10G080500' => 'tca', 'Thecc.10G080800' => 'tca', 'Thhalv10001560m.g' => 'esa', 'Thhalv10006120m.g' => 'esa', 'Thhalv10014375m.g' => 'esa', 'Thhalv10021264m.g' => 'esa', 'Thhalv10028856m.g' => 'esa', 'TPR.G1914' => 'tpr', 'TPR.G4757' => 'tpr', 'TPR.G5595' => 'tpr', 'TWI14G0952' => 'twi', 'TWI14G1307' => 'twi', 'TWI38G2143' => 'twi', 'TWI59G0826' => 'twi', 'TWI77G0527' => 'twi', 'TWI81G0150' => 'twi', 'unitig_21.g21018' => 'ugi', 'unitig_26.g9725' => 'ugi', 'unitig_744.g24653' => 'ugi', 'unitig_749.g13778' => 'ugi', 'unitig_899.g15035' => 'ugi', 'vmacro04296' => 'vma', 'vmacro04852' => 'vma', 'vmacro13404' => 'vma', 'vmacro20169' => 'vma', 'vmacro21014' => 'vma', 'VMungo0331G0237' => 'vmu', 'VMungo0331G0706' => 'vmu', 'VMungo0331G1361' => 'vmu', 'VMungo0331G1489' => 'vmu', 'VMungo0540G1037' => 'vmu', 'VMungo0720G2487' => 'vmu', 'VMungo0720G2721' => 'vmu', 'Zm00001eb086860' => 'zma', 'Zm00001eb104760' => 'zma', 'Zm00001eb148220' => 'zma', 'Zm00001eb259030' => 'zma', 'Zm00001eb289590' => 'zma', 'Zm00001eb420150' => 'zma' ), 'gf_id' => 'HOM05D000968', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000968' ), 'data_identifier' => 'HOM05D000968', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000968', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p31690' => 'bna', 'A03p36040' => 'bna', 'A03p53730' => 'bna', 'A04p01410' => 'bna', 'A05p05420' => 'bna', 'A05p39630' => 'bna', 'A05p39640' => 'bna', 'A09p00970' => 'bna', 'A09p53060' => 'bna', 'A10p31890' => 'bna', 'Aa31LG10G15040' => 'aar', 'Aa31LG1G21090' => 'aar', 'Aa31LG1G26900' => 'aar', 'Aa31LG3G1820' => 'aar', 'Aa31LG5G1100' => 'aar', 'Aa31LG6G4740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2265' => 'aag', 'Actinidia07998' => 'ach', 'Actinidia11266' => 'ach', 'Actinidia12682' => 'ach', 'Actinidia26479' => 'ach', 'Actinidia31406' => 'ach', 'Actinidia32437' => 'ach', 'Actinidia38862' => 'ach', 'Ah.05g174230' => 'amhyb', 'Ah.05g179070' => 'amhyb', 'Ah.05g179090' => 'amhyb', 'Ah.12g059950' => 'amhyb', 'AL3G20480' => 'aly', 'AL4G44520' => 'aly', 'AL5G43110' => 'aly', 'AL6G13890' => 'aly', 'AL6G52620' => 'aly', 'AL7G30830' => 'aly', 'Aqoxy1G00899' => 'aox', 'Aqoxy5G04333' => 'aox', 'Aqoxy7G00641' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3IZ0NN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4EF6AW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W9P8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79GA3M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C43NQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFCU6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G95YVJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCHK29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LU1UG8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX91RN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGB4B1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8DA0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9H7JI' => 'arhy', 'AT3G09320' => 'ath', 'AT3G60800' => 'ath', 'AT4G00840' => 'ath', 'AT4G22750' => 'ath', 'AT5G04270' => 'ath', 'ATR0090G003' => 'atr', 'ATR0559G349' => 'atr', 'ATR0680G261' => 'atr', 'ATR0810G048' => 'atr', 'Atru.chr12.831' => 'acertr', 'Atru.chr5.303' => 'acertr', 'Atru.chr5.748' => 'acertr', 'Atru.chr8.1999' => 'acertr', 'Atru.chr9.1436' => 'acertr', 'AUR62004211' => 'cqu', 'AUR62004548' => 'cqu', 'AUR62013637' => 'cqu', 'AUR62022662' => 'cqu', 'AUR62025777' => 'cqu', 'AUR62042386' => 'cqu', 'BcaB01g02310' => 'bca', 'BcaB01g06062' => 'bca', 'BcaB02g08975' => 'bca', 'BcaB02g08980' => 'bca', 'BcaC01g04228' => 'bca', 'BcaC01g06830' => 'bca', 'BcaC02g10186' => 'bca', 'BcaC02g12214' => 'bca', 'BcaC04g24101' => 'bca', 'BcaC05g29520' => 'bca', 'BcaC05g29661' => 'bca', 'BcaC06g32130' => 'bca', 'BcaC06g32131' => 'bca', 'BcaC07g40601' => 'bca', 'BcaC07g42641' => 'bca', 'BcaNung01038' => 'bca', 'BcaNung01676' => 'bca', 'BcaNung02480' => 'bca', 'BcaNung07376' => 'bca', 'BolC3t16146H' => 'bol', 'BolC3t16637H' => 'bol', 'BolC4t22257H' => 'bol', 'BolC4t24728H' => 'bol', 'BolC5t34517H' => 'bol', 'BolC7t45703H' => 'bol', 'BolC8t51166H' => 'bol', 'BolC9t53038H' => 'bol', 'BolC9t60000H' => 'bol', 'BraA01t01345Z' => 'bra', 'BraA01t01346Z' => 'bra', 'BraA01t01348Z' => 'bra', 'BraA03t12347Z' => 'bra', 'BraA03t12775Z' => 'bra', 'BraA03t14439Z' => 'bra', 'BraA04t15860Z' => 'bra', 'BraA05t19511Z' => 'bra', 'BraA05t22746Z' => 'bra', 'BraA09t35767Z' => 'bra', 'BraA09t40732Z' => 'bra', 'BraA10t45233Z' => 'bra', 'C03p38720' => 'bna', 'C03p43680' => 'bna', 'C04p06350' => 'bna', 'C04p31800' => 'bna', 'C05p58680' => 'bna', 'C07p52110' => 'bna', 'C08p35760' => 'bna', 'C09p01050' => 'bna', 'C09p72600' => 'bna', 'CAN.G106.2' => 'can', 'CAN.G1482.1' => 'can', 'CAN.G324.12' => 'can', 'CAN.G388.20' => 'can', 'CAN.G412.7' => 'can', 'CAN.G694.32' => 'can', 'CAN.G92.12' => 'can', 'CANSAT11G2353' => 'cansat', 'CANSAT21G1398' => 'cansat', 'CANSAT56G2456' => 'cansat', 'CANSAT56G3031' => 'cansat', 'CANSAT56G4539' => 'cansat', 'CARHR083680' => 'chi', 'CARHR171190' => 'chi', 'CARHR209010' => 'chi', 'CARHR229680' => 'chi', 'CARHR249490' => 'chi', 'Carub.0003s0844' => 'cru', 'Carub.0005s2755' => 'cru', 'Carub.0006s0322' => 'cru', 'Carub.0006s3586' => 'cru', 'Carub.0007s1855' => 'cru', 'Ca_07808_v3' => 'car', 'Ca_09535_v3' => 'car', 'Ca_10548_v3' => 'car', 'Ca_19913_v3' => 'car', 'Ca_19916_v3' => 'car', 'Ca_19975_v3' => 'car', 'CBR_g22876' => 'cbr', 'CBR_g22879' => 'cbr', 'CBR_g38491' => 'cbr', 'CBR_g54185' => 'cbr', 'CBR_g54190' => 'cbr', 'Cc02_g11020' => 'ccan', 'Cc02_g23920' => 'ccan', 'Cc02_g39860' => 'ccan', 'Cc02_g39870' => 'ccan', 'Cc03_g06760' => 'ccan', 'Cc06_g02450' => 'ccan', 'Cc09_g09450' => 'ccan', 'CDE02G1959' => 'cde', 'CDE04G0600' => 'cde', 'CDE07G1996' => 'cde', 'CDE07G2078' => 'cde', 'CDE11G0611' => 'cde', 'Cfa001683' => 'cfa', 'Cfa001734' => 'cfa', 'Cfa001737' => 'cfa', 'Cfa003751' => 'cfa', 'Cfa012019' => 'cfa', 'Cfa017353' => 'cfa', 'Cfa017732' => 'cfa', 'Cfa022464' => 'cfa', 'Ciclev10012400m.g' => 'ccl', 'Ciclev10021242m.g' => 'ccl', 'Ciclev10021302m.g' => 'ccl', 'Ciclev10021463m.g' => 'ccl', 'Ciclev10032359m.g' => 'ccl', 'CiPaw.01G081000' => 'cil', 'CiPaw.01G262500' => 'cil', 'CiPaw.01G269800' => 'cil', 'CiPaw.02G168400' => 'cil', 'CiPaw.05G119500' => 'cil', 'CiPaw.11G147300' => 'cil', 'ClCG01G003630' => 'cla', 'ClCG05G000510' => 'cla', 'ClCG05G002300' => 'cla', 'ClCG08G007650' => 'cla', 'ClCG10G021250' => 'cla', 'COL.COLO4_06218' => 'col', 'COL.COLO4_12538' => 'col', 'COL.COLO4_14775' => 'col', 'COL.COLO4_23875' => 'col', 'Cpa.g.sc141.16' => 'cpa', 'Cpa.g.sc169.16' => 'cpa', 'Cpa.g.sc244.4' => 'cpa', 'Cpa.g.sc244.5' => 'cpa', 'Cpa.g.sc29.87' => 'cpa', 'Cpa.g.sc53.115' => 'cpa', 'Cre03.g207502' => 'cre', 'Cre06.g277000' => 'cre', 'Cre09.g394050' => 'cre', 'CsaV3_3G007680' => 'csa', 'CsaV3_3G009710' => 'csa', 'CsaV3_3G034790' => 'csa', 'CsaV3_5G003750' => 'csa', 'CsaV3_6G036620' => 'csa', 'CSS0002288' => 'camsi', 'CSS0011250' => 'camsi', 'CSS0021619' => 'camsi', 'CSS0046701' => 'camsi', 'DCAR_006420' => 'dca', 'DCAR_006865' => 'dca', 'DCAR_008558' => 'dca', 'DCAR_028754' => 'dca', 'DCAR_028755' => 'dca', 'Dinv31218' => 'din', 'Dinv32371' => 'din', 'Dinv34250' => 'din', 'Dinv37156' => 'din', 'Dinv43704' => 'din', 'Duzib093G1811' => 'dzi', 'Duzib106G1622' => 'dzi', 'Duzib114G0504' => 'dzi', 'Duzib128G0338' => 'dzi', 'Duzib128G1577' => 'dzi', 'Duzib133G0104' => 'dzi', 'Duzib133G1080' => 'dzi', 'Duzib138G0324' => 'dzi', 'Duzib138G0394' => 'dzi', 'Duzib205G0122' => 'dzi', 'Duzib268G1020' => 'dzi', 'Duzib268G1359' => 'dzi', 'ECA232G3929' => 'eca', 'ECA236G2210' => 'eca', 'ECA236G2287' => 'eca', 'ECA240G4568' => 'eca', 'ECA247G0894' => 'eca', 'EL10Ac1g00200' => 'bvu', 'EL10Ac1g00886' => 'bvu', 'EL10As1g23091' => 'bvu', 'EL10As1g23092' => 'bvu', 'Eucgr.A01284' => 'egr', 'Eucgr.A01285' => 'egr', 'Eucgr.D02456' => 'egr', 'Eucgr.E00018' => 'egr', 'Eucgr.E01439' => 'egr', 'Eucgr.G02859' => 'egr', 'FAN01G0168' => 'fan', 'FAN01G0453' => 'fan', 'FAN01G2761' => 'fan', 'FAN02G1239' => 'fan', 'FAN03G0645' => 'fan', 'FAN03G2707' => 'fan', 'FAN03G2978' => 'fan', 'FAN04G0227' => 'fan', 'FAN06G0091' => 'fan', 'FAN06G1418' => 'fan', 'FAN06G1512' => 'fan', 'FAN06G1986' => 'fan', 'FAN06G2905' => 'fan', 'FAN06G4325' => 'fan', 'FAN08G0033' => 'fan', 'FAN09G0642' => 'fan', 'FAN10G1763' => 'fan', 'FAN10G2026' => 'fan', 'FAN10G2513' => 'fan', 'FAN10G3402' => 'fan', 'FAN10G3564' => 'fan', 'FAN10G3987' => 'fan', 'FAN13G1490' => 'fan', 'FAN14G5857' => 'fan', 'FAN18G1188' => 'fan', 'FvH4_5g00750' => 'fve', 'FvH4_6g13410' => 'fve', 'FvH4_7g11740' => 'fve', 'FvH4_7g17410' => 'fve', 'FvH4_7g18860' => 'fve', 'Glyma.01G099100' => 'gma', 'Glyma.01G142300' => 'gma', 'Glyma.03G025500' => 'gma', 'Glyma.03G069700' => 'gma', 'Glyma.03G260000' => 'gma', 'Glyma.09G269800' => 'gma', 'Glyma.10G208700' => 'gma', 'Glyma.18G220400' => 'gma', 'Glyma.20G182000' => 'gma', 'Gohir.A01G221726' => 'ghi', 'Gohir.A07G134600' => 'ghi', 'Gohir.A07G146000' => 'ghi', 'Gohir.A08G173900' => 'ghi', 'Gohir.A09G194900' => 'ghi', 'Gohir.A10G204100' => 'ghi', 'Gohir.A11G080600' => 'ghi', 'Gohir.A11G327500' => 'ghi', 'Gohir.A12G101800' => 'ghi', 'Gohir.D01G211200' => 'ghi', 'Gohir.D07G139200' => 'ghi', 'Gohir.D07G152100' => 'ghi', 'Gohir.D08G192600' => 'ghi', 'Gohir.D09G189200' => 'ghi', 'Gohir.D10G212000' => 'ghi', 'Gohir.D11G085200' => 'ghi', 'Gohir.D11G346400' => 'ghi', 'Gohir.D12G104800' => 'ghi', 'Gorai.001G151300' => 'gra', 'Gorai.001G174100' => 'gra', 'Gorai.002G257000' => 'gra', 'Gorai.004G202600' => 'gra', 'Gorai.007G090900' => 'gra', 'Gorai.007G376700' => 'gra', 'Gorai.008G114100' => 'gra', 'Gorai.011G237900' => 'gra', 'GSVIVG01005450001' => 'vvi', 'GSVIVG01016232001' => 'vvi', 'GSVIVG01026157001' => 'vvi', 'GSVIVG01027419001' => 'vvi', 'GSVIVG01027631001' => 'vvi', 'GSVIVG01034143001' => 'vvi', 'HanXRQChr03g0093921' => 'han', 'HanXRQChr04g0120001' => 'han', 'HanXRQChr04g0122561' => 'han', 'HanXRQChr09g0246851' => 'han', 'HanXRQChr10g0293311' => 'han', 'HanXRQChr13g0425231' => 'han', 'HanXRQChr16g0532571' => 'han', 'Haze_09050' => 'cav', 'Haze_15715' => 'cav', 'Haze_15716' => 'cav', 'Haze_16803' => 'cav', 'Haze_16850' => 'cav', 'Hma1.2p1_0301F.1_g118655' => 'hma', 'Hma1.2p1_0309F.1_g120590' => 'hma', 'Hma1.2p1_0936F.1_g238900' => 'hma', 'Hma1.2p1_3552F.1_g336740' => 'hma', 'HPP92_003520' => 'vpl', 'HPP92_006628' => 'vpl', 'HPP92_006645' => 'vpl', 'HPP92_014669' => 'vpl', 'HPP92_015077' => 'vpl', 'Hund16742' => 'sun', 'Hund17022' => 'sun', 'Lalb_Chr02g0152131' => 'lal', 'Lalb_Chr05g0225371' => 'lal', 'Lalb_Chr07g0189841' => 'lal', 'Lalb_Chr07g0192961' => 'lal', 'Lalb_Chr12g0208221' => 'lal', 'Lalb_Chr13g0291211' => 'lal', 'Lalb_Chr13g0291781' => 'lal', 'Lalb_Chr18g0044651' => 'lal', 'Lalb_Chr21g0313731' => 'lal', 'Lj1g0022533' => 'lja', 'Lj2A18T50' => 'lonja', 'Lj2A92G93' => 'lonja', 'Lj3A965T73' => 'lonja', 'Lj3g0000673' => 'lja', 'Lj3g0002666' => 'lja', 'Lj4g0016985' => 'lja', 'Lj5g0003625' => 'lja', 'Lj7A529G36' => 'lonja', 'Lj9A569T49' => 'lonja', 'Lj9A604T63' => 'lonja', 'Lsat_1_v5_gn_3_132060' => 'lsa', 'Lsat_1_v5_gn_4_68941' => 'lsa', 'Lsat_1_v5_gn_5_95580' => 'lsa', 'Lsat_1_v5_gn_7_161' => 'lsa', 'Lsat_1_v5_gn_7_7041' => 'lsa', 'Lsat_1_v5_gn_9_33481' => 'lsa', 'Lsat_1_v5_gn_9_68260' => 'lsa', 'Manes.01G073100' => 'mes', 'Manes.01G266300' => 'mes', 'Manes.02G033300' => 'mes', 'Manes.05G017900' => 'mes', 'Manes.05G046100' => 'mes', 'Manes.08G080900' => 'mes', 'Manes.10G049400' => 'mes', 'Mapoly0009s0186' => 'mpo', 'Mapoly0036s0118' => 'mpo', 'Mapoly0101s0046' => 'mpo', 'MBI04_g30218_MAGBIO' => 'mbi', 'MBI04_g35564_MAGBIO' => 'mbi', 'MBI12_g34011_MAGBIO' => 'mbi', 'MBI14_g04655_MAGBIO' => 'mbi', 'MCO07G653' => 'mco', 'MCO10G173' => 'mco', 'MD01G1087100' => 'mdo', 'MD01G1104200' => 'mdo', 'MD02G1205100' => 'mdo', 'MD04G1079200' => 'mdo', 'MD04G1131400' => 'mdo', 'MD07G1121600' => 'mdo', 'MD07G1157300' => 'mdo', 'MD07G1171000' => 'mdo', 'MD12G1144500' => 'mdo', 'Medtr1g094610' => 'mtr', 'Medtr4g021795' => 'mtr', 'Medtr4g023760' => 'mtr', 'Medtr7g118050' => 'mtr', 'MELO3C005582.2' => 'cme', 'MELO3C005989.2' => 'cme', 'MELO3C006192.2' => 'cme', 'MELO3C009248.2' => 'cme', 'MELO3C019817.2' => 'cme', 'Migut.B01625' => 'egut', 'Migut.B01915' => 'egut', 'Migut.F01721' => 'egut', 'Migut.J00314' => 'egut', 'MSTRG.20742' => 'ama', 'MSTRG.8134' => 'ama', 'Nitab4.5_0000096g0010' => 'nta', 'Nitab4.5_0000202g0030' => 'nta', 'Nitab4.5_0000216g0370' => 'nta', 'Nitab4.5_0000457g0230' => 'nta', 'Nitab4.5_0001702g0170' => 'nta', 'Nitab4.5_0003607g0010' => 'nta', 'Nitab4.5_0004917g0020' => 'nta', 'Nitab4.5_0007059g0010' => 'nta', 'Nitab4.5_0007184g0010' => 'nta', 'Nitab4.5_0007346g0020' => 'nta', 'Nn1g00410' => 'nnu', 'Nn1g01252' => 'nnu', 'Nn2g11168' => 'nnu', 'Nn2g13403' => 'nnu', 'Nn2g13760' => 'nnu', 'Nn4g26380' => 'nnu', 'Oeu000806.2' => 'oeu', 'Oeu005788.1' => 'oeu', 'Oeu006900.3' => 'oeu', 'Oeu007797.1' => 'oeu', 'Oeu011932.1' => 'oeu', 'Oeu022739.1' => 'oeu', 'Oeu037918.1' => 'oeu', 'Oeu055490.2' => 'oeu', 'Os01g0844400' => 'osa', 'Os02g0819100' => 'osa', 'Os03g0804300' => 'osa', 'Os05g0458000' => 'osa', 'Os07g0467800' => 'osa', 'Os12g0602200' => 'osa', 'Peaxi162Scf00013g03444' => 'pax', 'Peaxi162Scf00094g01120' => 'pax', 'Peaxi162Scf00191g01211' => 'pax', 'Peaxi162Scf00238g01110' => 'pax', 'Peaxi162Scf00330g00719' => 'pax', 'Peaxi162Scf00627g00018' => 'pax', 'PGR031G2686' => 'pgr', 'PGR042G0809' => 'pgr', 'PGR142G0193' => 'pgr', 'PGSC0003DMG400011066' => 'stu', 'PGSC0003DMG400012041' => 'stu', 'PGSC0003DMG400013678' => 'stu', 'PGSC0003DMG400023477' => 'stu', 'PGSC0003DMG400025956' => 'stu', 'PGSC0003DMG401019151' => 'stu', 'Phvul.006G116400' => 'pvu', 'Phvul.007G097300' => 'pvu', 'Phvul.010G015000' => 'pvu', 'Phvul.010G083900' => 'pvu', 'Potri.001G117100' => 'ptr', 'Potri.002G147300' => 'ptr', 'Potri.003G115600' => 'ptr', 'Potri.006G087400' => 'ptr', 'Potri.010G226100' => 'ptr', 'Potri.014G069200' => 'ptr', 'Potri.014G104000' => 'ptr', 'Potri.016G100200' => 'ptr', 'Pp3c10_20450' => 'ppa', 'Pp3c1_42400' => 'ppa', 'Pp3c3_24390' => 'ppa', 'Pp3c3_2860' => 'ppa', 'PRCOL_00003193' => 'pco', 'Prupe.2G144500' => 'ppe', 'Prupe.2G195700' => 'ppe', 'Prupe.2G209800' => 'ppe', 'Prupe.5G080000' => 'ppe', 'Prupe.6G257900' => 'ppe', 'Psat3g001160' => 'psa', 'Psat6g181880' => 'psa', 'Psat7g233720' => 'psa', 'PSO063G7587' => 'pso', 'PSO339G2145' => 'pso', 'PSO339G3369' => 'pso', 'PSO478G2747' => 'pso', 'PSO513G0140' => 'pso', 'PSO782G1614' => 'pso', 'PSO782G4889' => 'pso', 'PSO782G5485' => 'pso', 'PSO801G0241' => 'pso', 'QL07p048854' => 'qlo', 'QL08p046745' => 'qlo', 'QL08p052606' => 'qlo', 'QL08p053414' => 'qlo', 'QL08p054868' => 'qlo', 'RcHm_v2.0_Chr1g0350251' => 'rch', 'RcHm_v2.0_Chr1g0360851' => 'rch', 'RcHm_v2.0_Chr1g0362791' => 'rch', 'RcHm_v2.0_Chr3g0466281' => 'rch', 'RcHm_v2.0_Chr7g0201481' => 'rch', 'Rhsim01G0148600' => 'rsi', 'Rhsim05G0194400' => 'rsi', 'Rhsim07G0000700' => 'rsi', 'Rhsim07G0000800' => 'rsi', 'Rhsim07G0027900' => 'rsi', 'Rhsim09G0149500' => 'rsi', 'RhsimUnG0186900' => 'rsi', 'Sabra01G0089900' => 'sbr', 'Sabra02G0114700' => 'sbr', 'Sabra02G0116300' => 'sbr', 'Sabra03G0080100' => 'sbr', 'Sabra08G0024300' => 'sbr', 'Sabra10G0174300' => 'sbr', 'Sabra14G0048900' => 'sbr', 'Sabra14G0076500' => 'sbr', 'SalBow5G2513' => 'sbo', 'Sc01g0002300' => 'sci', 'Sc01g0004450' => 'sci', 'Sc06g0001680' => 'sci', 'Sc23g0003580' => 'sci', 'Sed0000913' => 'sed', 'Sed0001655' => 'sed', 'Sed0007745' => 'sed', 'Sed0010951' => 'sed', 'Sed0017599' => 'sed', 'Sed0021405' => 'sed', 'Sed0022810' => 'sed', 'SEGI_07099' => 'sgi', 'SEGI_11931' => 'sgi', 'SEGI_13187' => 'sgi', 'SEGI_29958' => 'sgi', 'SEGI_36351' => 'sgi', 'SGA_v2.0_scaffold126G33770' => 'sas', 'SGA_v2.0_scaffold153G37003' => 'sas', 'SGA_v2.0_scaffold2G01359' => 'sas', 'SGA_v2.0_scaffold5G03064' => 'sas', 'SGA_v2.0_scaffold95G28903' => 'sas', 'SHI12701' => 'shi', 'SHI26410' => 'shi', 'SHI38997' => 'shi', 'SHI53759' => 'shi', 'SHI53886' => 'shi', 'SHI54714' => 'shi', 'SMO011G0041' => 'smo', 'SMO146G0251' => 'smo', 'SMO160G0004' => 'smo', 'SMO174G0057' => 'smo', 'SMO244G0089' => 'smo', 'SMO296G0011' => 'smo', 'Solyc01g091280.3' => 'sly', 'Solyc05g047610.3' => 'sly', 'Solyc05g047640.3' => 'sly', 'Solyc05g055630.3' => 'sly', 'Solyc10g018160.2' => 'sly', 'Solyc10g084820.2' => 'sly', 'Solyc10g086565.2' => 'sly', 'Sopen01g037030' => 'spe', 'Sopen05g027920' => 'spe', 'Sopen05g034070' => 'spe', 'Sopen10g007260' => 'spe', 'Sopen10g034260' => 'spe', 'Sopen10g035950' => 'spe', 'Sp3g07710' => 'spa', 'Sp4g27420' => 'spa', 'Sp5g02450' => 'spa', 'Sp6g01280' => 'spa', 'Sp6g38480' => 'spa', 'Sp7g20780' => 'spa', 'TAR374G1413' => 'tar', 'TAR623G1777' => 'tar', 'TAR629G2370' => 'tar', 'TAR633G1759' => 'tar', 'TAR636G3387' => 'tar', 'THA.LOC104802447' => 'tha', 'THA.LOC104813916' => 'tha', 'THA.LOC104816423' => 'tha', 'THA.LOC104817246' => 'tha', 'THA.LOC104825895' => 'tha', 'Thecc.01G335200' => 'tca', 'Thecc.01G377400' => 'tca', 'Thecc.03G262200' => 'tca', 'Thecc.05G036800' => 'tca', 'Thecc.10G080500' => 'tca', 'Thecc.10G080800' => 'tca', 'Thhalv10001560m.g' => 'esa', 'Thhalv10006120m.g' => 'esa', 'Thhalv10014375m.g' => 'esa', 'Thhalv10021264m.g' => 'esa', 'Thhalv10028856m.g' => 'esa', 'TPR.G1914' => 'tpr', 'TPR.G4757' => 'tpr', 'TPR.G5595' => 'tpr', 'TWI14G0952' => 'twi', 'TWI14G1307' => 'twi', 'TWI38G2143' => 'twi', 'TWI59G0826' => 'twi', 'TWI77G0527' => 'twi', 'TWI81G0150' => 'twi', 'unitig_21.g21018' => 'ugi', 'unitig_26.g9725' => 'ugi', 'unitig_744.g24653' => 'ugi', 'unitig_749.g13778' => 'ugi', 'unitig_899.g15035' => 'ugi', 'vmacro04296' => 'vma', 'vmacro04852' => 'vma', 'vmacro13404' => 'vma', 'vmacro20169' => 'vma', 'vmacro21014' => 'vma', 'VMungo0331G0237' => 'vmu', 'VMungo0331G0706' => 'vmu', 'VMungo0331G1361' => 'vmu', 'VMungo0331G1489' => 'vmu', 'VMungo0540G1037' => 'vmu', 'VMungo0720G2487' => 'vmu', 'VMungo0720G2721' => 'vmu', 'Zm00001eb086860' => 'zma', 'Zm00001eb104760' => 'zma', 'Zm00001eb148220' => 'zma', 'Zm00001eb259030' => 'zma', 'Zm00001eb289590' => 'zma', 'Zm00001eb420150' => 'zma' ) $gf_id = 'HOM05D000968' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000968' ) $data_identifier = 'HOM05D000968' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 19, 'bol' => (int) 9, 'bra' => (int) 12, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 5, 'ccan' => (int) 7, 'cde' => (int) 5, 'cfa' => (int) 8, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 4, 'dca' => (int) 5, 'din' => (int) 5, 'dzi' => (int) 12, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 25, 'fve' => (int) 5, 'gma' => (int) 9, 'ghi' => (int) 18, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 7, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 5, 'sun' => (int) 2, 'lal' => (int) 9, 'lja' => (int) 5, 'lonja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 9, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 2, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 3, 'stu' => (int) 6, 'pvu' => (int) 4, 'ptr' => (int) 8, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 3, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 1, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 5, 'sas' => (int) 5, 'shi' => (int) 6, 'smo' => (int) 6, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 3, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420150' $species_info = array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ) $local_species = 'amhyb' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000968', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p31690' => 'bna', 'A03p36040' => 'bna', 'A03p53730' => 'bna', 'A04p01410' => 'bna', 'A05p05420' => 'bna', 'A05p39630' => 'bna', 'A05p39640' => 'bna', 'A09p00970' => 'bna', 'A09p53060' => 'bna', 'A10p31890' => 'bna', 'Aa31LG10G15040' => 'aar', 'Aa31LG1G21090' => 'aar', 'Aa31LG1G26900' => 'aar', 'Aa31LG3G1820' => 'aar', 'Aa31LG5G1100' => 'aar', 'Aa31LG6G4740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2265' => 'aag', 'Actinidia07998' => 'ach', 'Actinidia11266' => 'ach', 'Actinidia12682' => 'ach', 'Actinidia26479' => 'ach', 'Actinidia31406' => 'ach', 'Actinidia32437' => 'ach', 'Actinidia38862' => 'ach', 'Ah.05g174230' => 'amhyb', 'Ah.05g179070' => 'amhyb', 'Ah.05g179090' => 'amhyb', 'Ah.12g059950' => 'amhyb', 'AL3G20480' => 'aly', 'AL4G44520' => 'aly', 'AL5G43110' => 'aly', 'AL6G13890' => 'aly', 'AL6G52620' => 'aly', 'AL7G30830' => 'aly', 'Aqoxy1G00899' => 'aox', 'Aqoxy5G04333' => 'aox', 'Aqoxy7G00641' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3IZ0NN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4EF6AW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W9P8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79GA3M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C43NQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFCU6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G95YVJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCHK29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LU1UG8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX91RN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGB4B1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8DA0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9H7JI' => 'arhy', 'AT3G09320' => 'ath', 'AT3G60800' => 'ath', 'AT4G00840' => 'ath', 'AT4G22750' => 'ath', 'AT5G04270' => 'ath', 'ATR0090G003' => 'atr', 'ATR0559G349' => 'atr', 'ATR0680G261' => 'atr', 'ATR0810G048' => 'atr', 'Atru.chr12.831' => 'acertr', 'Atru.chr5.303' => 'acertr', 'Atru.chr5.748' => 'acertr', 'Atru.chr8.1999' => 'acertr', 'Atru.chr9.1436' => 'acertr', 'AUR62004211' => 'cqu', 'AUR62004548' => 'cqu', 'AUR62013637' => 'cqu', 'AUR62022662' => 'cqu', 'AUR62025777' => 'cqu', 'AUR62042386' => 'cqu', 'BcaB01g02310' => 'bca', 'BcaB01g06062' => 'bca', 'BcaB02g08975' => 'bca', 'BcaB02g08980' => 'bca', 'BcaC01g04228' => 'bca', 'BcaC01g06830' => 'bca', 'BcaC02g10186' => 'bca', 'BcaC02g12214' => 'bca', 'BcaC04g24101' => 'bca', 'BcaC05g29520' => 'bca', 'BcaC05g29661' => 'bca', 'BcaC06g32130' => 'bca', 'BcaC06g32131' => 'bca', 'BcaC07g40601' => 'bca', 'BcaC07g42641' => 'bca', 'BcaNung01038' => 'bca', 'BcaNung01676' => 'bca', 'BcaNung02480' => 'bca', 'BcaNung07376' => 'bca', 'BolC3t16146H' => 'bol', 'BolC3t16637H' => 'bol', 'BolC4t22257H' => 'bol', 'BolC4t24728H' => 'bol', 'BolC5t34517H' => 'bol', 'BolC7t45703H' => 'bol', 'BolC8t51166H' => 'bol', 'BolC9t53038H' => 'bol', 'BolC9t60000H' => 'bol', 'BraA01t01345Z' => 'bra', 'BraA01t01346Z' => 'bra', 'BraA01t01348Z' => 'bra', 'BraA03t12347Z' => 'bra', 'BraA03t12775Z' => 'bra', 'BraA03t14439Z' => 'bra', 'BraA04t15860Z' => 'bra', 'BraA05t19511Z' => 'bra', 'BraA05t22746Z' => 'bra', 'BraA09t35767Z' => 'bra', 'BraA09t40732Z' => 'bra', 'BraA10t45233Z' => 'bra', 'C03p38720' => 'bna', 'C03p43680' => 'bna', 'C04p06350' => 'bna', 'C04p31800' => 'bna', 'C05p58680' => 'bna', 'C07p52110' => 'bna', 'C08p35760' => 'bna', 'C09p01050' => 'bna', 'C09p72600' => 'bna', 'CAN.G106.2' => 'can', 'CAN.G1482.1' => 'can', 'CAN.G324.12' => 'can', 'CAN.G388.20' => 'can', 'CAN.G412.7' => 'can', 'CAN.G694.32' => 'can', 'CAN.G92.12' => 'can', 'CANSAT11G2353' => 'cansat', 'CANSAT21G1398' => 'cansat', 'CANSAT56G2456' => 'cansat', 'CANSAT56G3031' => 'cansat', 'CANSAT56G4539' => 'cansat', 'CARHR083680' => 'chi', 'CARHR171190' => 'chi', 'CARHR209010' => 'chi', 'CARHR229680' => 'chi', 'CARHR249490' => 'chi', 'Carub.0003s0844' => 'cru', 'Carub.0005s2755' => 'cru', 'Carub.0006s0322' => 'cru', 'Carub.0006s3586' => 'cru', 'Carub.0007s1855' => 'cru', 'Ca_07808_v3' => 'car', 'Ca_09535_v3' => 'car', 'Ca_10548_v3' => 'car', 'Ca_19913_v3' => 'car', 'Ca_19916_v3' => 'car', 'Ca_19975_v3' => 'car', 'CBR_g22876' => 'cbr', 'CBR_g22879' => 'cbr', 'CBR_g38491' => 'cbr', 'CBR_g54185' => 'cbr', 'CBR_g54190' => 'cbr', 'Cc02_g11020' => 'ccan', 'Cc02_g23920' => 'ccan', 'Cc02_g39860' => 'ccan', 'Cc02_g39870' => 'ccan', 'Cc03_g06760' => 'ccan', 'Cc06_g02450' => 'ccan', 'Cc09_g09450' => 'ccan', 'CDE02G1959' => 'cde', 'CDE04G0600' => 'cde', 'CDE07G1996' => 'cde', 'CDE07G2078' => 'cde', 'CDE11G0611' => 'cde', 'Cfa001683' => 'cfa', 'Cfa001734' => 'cfa', 'Cfa001737' => 'cfa', 'Cfa003751' => 'cfa', 'Cfa012019' => 'cfa', 'Cfa017353' => 'cfa', 'Cfa017732' => 'cfa', 'Cfa022464' => 'cfa', 'Ciclev10012400m.g' => 'ccl', 'Ciclev10021242m.g' => 'ccl', 'Ciclev10021302m.g' => 'ccl', 'Ciclev10021463m.g' => 'ccl', 'Ciclev10032359m.g' => 'ccl', 'CiPaw.01G081000' => 'cil', 'CiPaw.01G262500' => 'cil', 'CiPaw.01G269800' => 'cil', 'CiPaw.02G168400' => 'cil', 'CiPaw.05G119500' => 'cil', 'CiPaw.11G147300' => 'cil', 'ClCG01G003630' => 'cla', 'ClCG05G000510' => 'cla', 'ClCG05G002300' => 'cla', 'ClCG08G007650' => 'cla', 'ClCG10G021250' => 'cla', 'COL.COLO4_06218' => 'col', 'COL.COLO4_12538' => 'col', 'COL.COLO4_14775' => 'col', 'COL.COLO4_23875' => 'col', 'Cpa.g.sc141.16' => 'cpa', 'Cpa.g.sc169.16' => 'cpa', 'Cpa.g.sc244.4' => 'cpa', 'Cpa.g.sc244.5' => 'cpa', 'Cpa.g.sc29.87' => 'cpa', 'Cpa.g.sc53.115' => 'cpa', 'Cre03.g207502' => 'cre', 'Cre06.g277000' => 'cre', 'Cre09.g394050' => 'cre', 'CsaV3_3G007680' => 'csa', 'CsaV3_3G009710' => 'csa', 'CsaV3_3G034790' => 'csa', 'CsaV3_5G003750' => 'csa', 'CsaV3_6G036620' => 'csa', 'CSS0002288' => 'camsi', 'CSS0011250' => 'camsi', 'CSS0021619' => 'camsi', 'CSS0046701' => 'camsi', 'DCAR_006420' => 'dca', 'DCAR_006865' => 'dca', 'DCAR_008558' => 'dca', 'DCAR_028754' => 'dca', 'DCAR_028755' => 'dca', 'Dinv31218' => 'din', 'Dinv32371' => 'din', 'Dinv34250' => 'din', 'Dinv37156' => 'din', 'Dinv43704' => 'din', 'Duzib093G1811' => 'dzi', 'Duzib106G1622' => 'dzi', 'Duzib114G0504' => 'dzi', 'Duzib128G0338' => 'dzi', 'Duzib128G1577' => 'dzi', 'Duzib133G0104' => 'dzi', 'Duzib133G1080' => 'dzi', 'Duzib138G0324' => 'dzi', 'Duzib138G0394' => 'dzi', 'Duzib205G0122' => 'dzi', 'Duzib268G1020' => 'dzi', 'Duzib268G1359' => 'dzi', 'ECA232G3929' => 'eca', 'ECA236G2210' => 'eca', 'ECA236G2287' => 'eca', 'ECA240G4568' => 'eca', 'ECA247G0894' => 'eca', 'EL10Ac1g00200' => 'bvu', 'EL10Ac1g00886' => 'bvu', 'EL10As1g23091' => 'bvu', 'EL10As1g23092' => 'bvu', 'Eucgr.A01284' => 'egr', 'Eucgr.A01285' => 'egr', 'Eucgr.D02456' => 'egr', 'Eucgr.E00018' => 'egr', 'Eucgr.E01439' => 'egr', 'Eucgr.G02859' => 'egr', 'FAN01G0168' => 'fan', 'FAN01G0453' => 'fan', 'FAN01G2761' => 'fan', 'FAN02G1239' => 'fan', 'FAN03G0645' => 'fan', 'FAN03G2707' => 'fan', 'FAN03G2978' => 'fan', 'FAN04G0227' => 'fan', 'FAN06G0091' => 'fan', 'FAN06G1418' => 'fan', 'FAN06G1512' => 'fan', 'FAN06G1986' => 'fan', 'FAN06G2905' => 'fan', 'FAN06G4325' => 'fan', 'FAN08G0033' => 'fan', 'FAN09G0642' => 'fan', 'FAN10G1763' => 'fan', 'FAN10G2026' => 'fan', 'FAN10G2513' => 'fan', 'FAN10G3402' => 'fan', 'FAN10G3564' => 'fan', 'FAN10G3987' => 'fan', 'FAN13G1490' => 'fan', 'FAN14G5857' => 'fan', 'FAN18G1188' => 'fan', 'FvH4_5g00750' => 'fve', 'FvH4_6g13410' => 'fve', 'FvH4_7g11740' => 'fve', 'FvH4_7g17410' => 'fve', 'FvH4_7g18860' => 'fve', 'Glyma.01G099100' => 'gma', 'Glyma.01G142300' => 'gma', 'Glyma.03G025500' => 'gma', 'Glyma.03G069700' => 'gma', 'Glyma.03G260000' => 'gma', 'Glyma.09G269800' => 'gma', 'Glyma.10G208700' => 'gma', 'Glyma.18G220400' => 'gma', 'Glyma.20G182000' => 'gma', 'Gohir.A01G221726' => 'ghi', 'Gohir.A07G134600' => 'ghi', 'Gohir.A07G146000' => 'ghi', 'Gohir.A08G173900' => 'ghi', 'Gohir.A09G194900' => 'ghi', 'Gohir.A10G204100' => 'ghi', 'Gohir.A11G080600' => 'ghi', 'Gohir.A11G327500' => 'ghi', 'Gohir.A12G101800' => 'ghi', 'Gohir.D01G211200' => 'ghi', 'Gohir.D07G139200' => 'ghi', 'Gohir.D07G152100' => 'ghi', 'Gohir.D08G192600' => 'ghi', 'Gohir.D09G189200' => 'ghi', 'Gohir.D10G212000' => 'ghi', 'Gohir.D11G085200' => 'ghi', 'Gohir.D11G346400' => 'ghi', 'Gohir.D12G104800' => 'ghi', 'Gorai.001G151300' => 'gra', 'Gorai.001G174100' => 'gra', 'Gorai.002G257000' => 'gra', 'Gorai.004G202600' => 'gra', 'Gorai.007G090900' => 'gra', 'Gorai.007G376700' => 'gra', 'Gorai.008G114100' => 'gra', 'Gorai.011G237900' => 'gra', 'GSVIVG01005450001' => 'vvi', 'GSVIVG01016232001' => 'vvi', 'GSVIVG01026157001' => 'vvi', 'GSVIVG01027419001' => 'vvi', 'GSVIVG01027631001' => 'vvi', 'GSVIVG01034143001' => 'vvi', 'HanXRQChr03g0093921' => 'han', 'HanXRQChr04g0120001' => 'han', 'HanXRQChr04g0122561' => 'han', 'HanXRQChr09g0246851' => 'han', 'HanXRQChr10g0293311' => 'han', 'HanXRQChr13g0425231' => 'han', 'HanXRQChr16g0532571' => 'han', 'Haze_09050' => 'cav', 'Haze_15715' => 'cav', 'Haze_15716' => 'cav', 'Haze_16803' => 'cav', 'Haze_16850' => 'cav', 'Hma1.2p1_0301F.1_g118655' => 'hma', 'Hma1.2p1_0309F.1_g120590' => 'hma', 'Hma1.2p1_0936F.1_g238900' => 'hma', 'Hma1.2p1_3552F.1_g336740' => 'hma', 'HPP92_003520' => 'vpl', 'HPP92_006628' => 'vpl', 'HPP92_006645' => 'vpl', 'HPP92_014669' => 'vpl', 'HPP92_015077' => 'vpl', 'Hund16742' => 'sun', 'Hund17022' => 'sun', 'Lalb_Chr02g0152131' => 'lal', 'Lalb_Chr05g0225371' => 'lal', 'Lalb_Chr07g0189841' => 'lal', 'Lalb_Chr07g0192961' => 'lal', 'Lalb_Chr12g0208221' => 'lal', 'Lalb_Chr13g0291211' => 'lal', 'Lalb_Chr13g0291781' => 'lal', 'Lalb_Chr18g0044651' => 'lal', 'Lalb_Chr21g0313731' => 'lal', 'Lj1g0022533' => 'lja', 'Lj2A18T50' => 'lonja', 'Lj2A92G93' => 'lonja', 'Lj3A965T73' => 'lonja', 'Lj3g0000673' => 'lja', 'Lj3g0002666' => 'lja', 'Lj4g0016985' => 'lja', 'Lj5g0003625' => 'lja', 'Lj7A529G36' => 'lonja', 'Lj9A569T49' => 'lonja', 'Lj9A604T63' => 'lonja', 'Lsat_1_v5_gn_3_132060' => 'lsa', 'Lsat_1_v5_gn_4_68941' => 'lsa', 'Lsat_1_v5_gn_5_95580' => 'lsa', 'Lsat_1_v5_gn_7_161' => 'lsa', 'Lsat_1_v5_gn_7_7041' => 'lsa', 'Lsat_1_v5_gn_9_33481' => 'lsa', 'Lsat_1_v5_gn_9_68260' => 'lsa', 'Manes.01G073100' => 'mes', 'Manes.01G266300' => 'mes', 'Manes.02G033300' => 'mes', 'Manes.05G017900' => 'mes', 'Manes.05G046100' => 'mes', 'Manes.08G080900' => 'mes', 'Manes.10G049400' => 'mes', 'Mapoly0009s0186' => 'mpo', 'Mapoly0036s0118' => 'mpo', 'Mapoly0101s0046' => 'mpo', 'MBI04_g30218_MAGBIO' => 'mbi', 'MBI04_g35564_MAGBIO' => 'mbi', 'MBI12_g34011_MAGBIO' => 'mbi', 'MBI14_g04655_MAGBIO' => 'mbi', 'MCO07G653' => 'mco', 'MCO10G173' => 'mco', 'MD01G1087100' => 'mdo', 'MD01G1104200' => 'mdo', 'MD02G1205100' => 'mdo', 'MD04G1079200' => 'mdo', 'MD04G1131400' => 'mdo', 'MD07G1121600' => 'mdo', 'MD07G1157300' => 'mdo', 'MD07G1171000' => 'mdo', 'MD12G1144500' => 'mdo', 'Medtr1g094610' => 'mtr', 'Medtr4g021795' => 'mtr', 'Medtr4g023760' => 'mtr', 'Medtr7g118050' => 'mtr', 'MELO3C005582.2' => 'cme', 'MELO3C005989.2' => 'cme', 'MELO3C006192.2' => 'cme', 'MELO3C009248.2' => 'cme', 'MELO3C019817.2' => 'cme', 'Migut.B01625' => 'egut', 'Migut.B01915' => 'egut', 'Migut.F01721' => 'egut', 'Migut.J00314' => 'egut', 'MSTRG.20742' => 'ama', 'MSTRG.8134' => 'ama', 'Nitab4.5_0000096g0010' => 'nta', 'Nitab4.5_0000202g0030' => 'nta', 'Nitab4.5_0000216g0370' => 'nta', 'Nitab4.5_0000457g0230' => 'nta', 'Nitab4.5_0001702g0170' => 'nta', 'Nitab4.5_0003607g0010' => 'nta', 'Nitab4.5_0004917g0020' => 'nta', 'Nitab4.5_0007059g0010' => 'nta', 'Nitab4.5_0007184g0010' => 'nta', 'Nitab4.5_0007346g0020' => 'nta', 'Nn1g00410' => 'nnu', 'Nn1g01252' => 'nnu', 'Nn2g11168' => 'nnu', 'Nn2g13403' => 'nnu', 'Nn2g13760' => 'nnu', 'Nn4g26380' => 'nnu', 'Oeu000806.2' => 'oeu', 'Oeu005788.1' => 'oeu', 'Oeu006900.3' => 'oeu', 'Oeu007797.1' => 'oeu', 'Oeu011932.1' => 'oeu', 'Oeu022739.1' => 'oeu', 'Oeu037918.1' => 'oeu', 'Oeu055490.2' => 'oeu', 'Os01g0844400' => 'osa', 'Os02g0819100' => 'osa', 'Os03g0804300' => 'osa', 'Os05g0458000' => 'osa', 'Os07g0467800' => 'osa', 'Os12g0602200' => 'osa', 'Peaxi162Scf00013g03444' => 'pax', 'Peaxi162Scf00094g01120' => 'pax', 'Peaxi162Scf00191g01211' => 'pax', 'Peaxi162Scf00238g01110' => 'pax', 'Peaxi162Scf00330g00719' => 'pax', 'Peaxi162Scf00627g00018' => 'pax', 'PGR031G2686' => 'pgr', 'PGR042G0809' => 'pgr', 'PGR142G0193' => 'pgr', 'PGSC0003DMG400011066' => 'stu', 'PGSC0003DMG400012041' => 'stu', 'PGSC0003DMG400013678' => 'stu', 'PGSC0003DMG400023477' => 'stu', 'PGSC0003DMG400025956' => 'stu', 'PGSC0003DMG401019151' => 'stu', 'Phvul.006G116400' => 'pvu', 'Phvul.007G097300' => 'pvu', 'Phvul.010G015000' => 'pvu', 'Phvul.010G083900' => 'pvu', 'Potri.001G117100' => 'ptr', 'Potri.002G147300' => 'ptr', 'Potri.003G115600' => 'ptr', 'Potri.006G087400' => 'ptr', 'Potri.010G226100' => 'ptr', 'Potri.014G069200' => 'ptr', 'Potri.014G104000' => 'ptr', 'Potri.016G100200' => 'ptr', 'Pp3c10_20450' => 'ppa', 'Pp3c1_42400' => 'ppa', 'Pp3c3_24390' => 'ppa', 'Pp3c3_2860' => 'ppa', 'PRCOL_00003193' => 'pco', 'Prupe.2G144500' => 'ppe', 'Prupe.2G195700' => 'ppe', 'Prupe.2G209800' => 'ppe', 'Prupe.5G080000' => 'ppe', 'Prupe.6G257900' => 'ppe', 'Psat3g001160' => 'psa', 'Psat6g181880' => 'psa', 'Psat7g233720' => 'psa', 'PSO063G7587' => 'pso', 'PSO339G2145' => 'pso', 'PSO339G3369' => 'pso', 'PSO478G2747' => 'pso', 'PSO513G0140' => 'pso', 'PSO782G1614' => 'pso', 'PSO782G4889' => 'pso', 'PSO782G5485' => 'pso', 'PSO801G0241' => 'pso', 'QL07p048854' => 'qlo', 'QL08p046745' => 'qlo', 'QL08p052606' => 'qlo', 'QL08p053414' => 'qlo', 'QL08p054868' => 'qlo', 'RcHm_v2.0_Chr1g0350251' => 'rch', 'RcHm_v2.0_Chr1g0360851' => 'rch', 'RcHm_v2.0_Chr1g0362791' => 'rch', 'RcHm_v2.0_Chr3g0466281' => 'rch', 'RcHm_v2.0_Chr7g0201481' => 'rch', 'Rhsim01G0148600' => 'rsi', 'Rhsim05G0194400' => 'rsi', 'Rhsim07G0000700' => 'rsi', 'Rhsim07G0000800' => 'rsi', 'Rhsim07G0027900' => 'rsi', 'Rhsim09G0149500' => 'rsi', 'RhsimUnG0186900' => 'rsi', 'Sabra01G0089900' => 'sbr', 'Sabra02G0114700' => 'sbr', 'Sabra02G0116300' => 'sbr', 'Sabra03G0080100' => 'sbr', 'Sabra08G0024300' => 'sbr', 'Sabra10G0174300' => 'sbr', 'Sabra14G0048900' => 'sbr', 'Sabra14G0076500' => 'sbr', 'SalBow5G2513' => 'sbo', 'Sc01g0002300' => 'sci', 'Sc01g0004450' => 'sci', 'Sc06g0001680' => 'sci', 'Sc23g0003580' => 'sci', 'Sed0000913' => 'sed', 'Sed0001655' => 'sed', 'Sed0007745' => 'sed', 'Sed0010951' => 'sed', 'Sed0017599' => 'sed', 'Sed0021405' => 'sed', 'Sed0022810' => 'sed', 'SEGI_07099' => 'sgi', 'SEGI_11931' => 'sgi', 'SEGI_13187' => 'sgi', 'SEGI_29958' => 'sgi', 'SEGI_36351' => 'sgi', 'SGA_v2.0_scaffold126G33770' => 'sas', 'SGA_v2.0_scaffold153G37003' => 'sas', 'SGA_v2.0_scaffold2G01359' => 'sas', 'SGA_v2.0_scaffold5G03064' => 'sas', 'SGA_v2.0_scaffold95G28903' => 'sas', 'SHI12701' => 'shi', 'SHI26410' => 'shi', 'SHI38997' => 'shi', 'SHI53759' => 'shi', 'SHI53886' => 'shi', 'SHI54714' => 'shi', 'SMO011G0041' => 'smo', 'SMO146G0251' => 'smo', 'SMO160G0004' => 'smo', 'SMO174G0057' => 'smo', 'SMO244G0089' => 'smo', 'SMO296G0011' => 'smo', 'Solyc01g091280.3' => 'sly', 'Solyc05g047610.3' => 'sly', 'Solyc05g047640.3' => 'sly', 'Solyc05g055630.3' => 'sly', 'Solyc10g018160.2' => 'sly', 'Solyc10g084820.2' => 'sly', 'Solyc10g086565.2' => 'sly', 'Sopen01g037030' => 'spe', 'Sopen05g027920' => 'spe', 'Sopen05g034070' => 'spe', 'Sopen10g007260' => 'spe', 'Sopen10g034260' => 'spe', 'Sopen10g035950' => 'spe', 'Sp3g07710' => 'spa', 'Sp4g27420' => 'spa', 'Sp5g02450' => 'spa', 'Sp6g01280' => 'spa', 'Sp6g38480' => 'spa', 'Sp7g20780' => 'spa', 'TAR374G1413' => 'tar', 'TAR623G1777' => 'tar', 'TAR629G2370' => 'tar', 'TAR633G1759' => 'tar', 'TAR636G3387' => 'tar', 'THA.LOC104802447' => 'tha', 'THA.LOC104813916' => 'tha', 'THA.LOC104816423' => 'tha', 'THA.LOC104817246' => 'tha', 'THA.LOC104825895' => 'tha', 'Thecc.01G335200' => 'tca', 'Thecc.01G377400' => 'tca', 'Thecc.03G262200' => 'tca', 'Thecc.05G036800' => 'tca', 'Thecc.10G080500' => 'tca', 'Thecc.10G080800' => 'tca', 'Thhalv10001560m.g' => 'esa', 'Thhalv10006120m.g' => 'esa', 'Thhalv10014375m.g' => 'esa', 'Thhalv10021264m.g' => 'esa', 'Thhalv10028856m.g' => 'esa', 'TPR.G1914' => 'tpr', 'TPR.G4757' => 'tpr', 'TPR.G5595' => 'tpr', 'TWI14G0952' => 'twi', 'TWI14G1307' => 'twi', 'TWI38G2143' => 'twi', 'TWI59G0826' => 'twi', 'TWI77G0527' => 'twi', 'TWI81G0150' => 'twi', 'unitig_21.g21018' => 'ugi', 'unitig_26.g9725' => 'ugi', 'unitig_744.g24653' => 'ugi', 'unitig_749.g13778' => 'ugi', 'unitig_899.g15035' => 'ugi', 'vmacro04296' => 'vma', 'vmacro04852' => 'vma', 'vmacro13404' => 'vma', 'vmacro20169' => 'vma', 'vmacro21014' => 'vma', 'VMungo0331G0237' => 'vmu', 'VMungo0331G0706' => 'vmu', 'VMungo0331G1361' => 'vmu', 'VMungo0331G1489' => 'vmu', 'VMungo0540G1037' => 'vmu', 'VMungo0720G2487' => 'vmu', 'VMungo0720G2721' => 'vmu', 'Zm00001eb086860' => 'zma', 'Zm00001eb104760' => 'zma', 'Zm00001eb148220' => 'zma', 'Zm00001eb259030' => 'zma', 'Zm00001eb289590' => 'zma', 'Zm00001eb420150' => 'zma' ), 'gf_id' => 'HOM05D000968', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000968' ), 'data_identifier' => 'HOM05D000968', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000968', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p31690' => 'bna', 'A03p36040' => 'bna', 'A03p53730' => 'bna', 'A04p01410' => 'bna', 'A05p05420' => 'bna', 'A05p39630' => 'bna', 'A05p39640' => 'bna', 'A09p00970' => 'bna', 'A09p53060' => 'bna', 'A10p31890' => 'bna', 'Aa31LG10G15040' => 'aar', 'Aa31LG1G21090' => 'aar', 'Aa31LG1G26900' => 'aar', 'Aa31LG3G1820' => 'aar', 'Aa31LG5G1100' => 'aar', 'Aa31LG6G4740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2265' => 'aag', 'Actinidia07998' => 'ach', 'Actinidia11266' => 'ach', 'Actinidia12682' => 'ach', 'Actinidia26479' => 'ach', 'Actinidia31406' => 'ach', 'Actinidia32437' => 'ach', 'Actinidia38862' => 'ach', 'Ah.05g174230' => 'amhyb', 'Ah.05g179070' => 'amhyb', 'Ah.05g179090' => 'amhyb', 'Ah.12g059950' => 'amhyb', 'AL3G20480' => 'aly', 'AL4G44520' => 'aly', 'AL5G43110' => 'aly', 'AL6G13890' => 'aly', 'AL6G52620' => 'aly', 'AL7G30830' => 'aly', 'Aqoxy1G00899' => 'aox', 'Aqoxy5G04333' => 'aox', 'Aqoxy7G00641' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3IZ0NN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4EF6AW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W9P8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79GA3M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C43NQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFCU6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G95YVJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCHK29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LU1UG8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX91RN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGB4B1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8DA0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9H7JI' => 'arhy', 'AT3G09320' => 'ath', 'AT3G60800' => 'ath', 'AT4G00840' => 'ath', 'AT4G22750' => 'ath', 'AT5G04270' => 'ath', 'ATR0090G003' => 'atr', 'ATR0559G349' => 'atr', 'ATR0680G261' => 'atr', 'ATR0810G048' => 'atr', 'Atru.chr12.831' => 'acertr', 'Atru.chr5.303' => 'acertr', 'Atru.chr5.748' => 'acertr', 'Atru.chr8.1999' => 'acertr', 'Atru.chr9.1436' => 'acertr', 'AUR62004211' => 'cqu', 'AUR62004548' => 'cqu', 'AUR62013637' => 'cqu', 'AUR62022662' => 'cqu', 'AUR62025777' => 'cqu', 'AUR62042386' => 'cqu', 'BcaB01g02310' => 'bca', 'BcaB01g06062' => 'bca', 'BcaB02g08975' => 'bca', 'BcaB02g08980' => 'bca', 'BcaC01g04228' => 'bca', 'BcaC01g06830' => 'bca', 'BcaC02g10186' => 'bca', 'BcaC02g12214' => 'bca', 'BcaC04g24101' => 'bca', 'BcaC05g29520' => 'bca', 'BcaC05g29661' => 'bca', 'BcaC06g32130' => 'bca', 'BcaC06g32131' => 'bca', 'BcaC07g40601' => 'bca', 'BcaC07g42641' => 'bca', 'BcaNung01038' => 'bca', 'BcaNung01676' => 'bca', 'BcaNung02480' => 'bca', 'BcaNung07376' => 'bca', 'BolC3t16146H' => 'bol', 'BolC3t16637H' => 'bol', 'BolC4t22257H' => 'bol', 'BolC4t24728H' => 'bol', 'BolC5t34517H' => 'bol', 'BolC7t45703H' => 'bol', 'BolC8t51166H' => 'bol', 'BolC9t53038H' => 'bol', 'BolC9t60000H' => 'bol', 'BraA01t01345Z' => 'bra', 'BraA01t01346Z' => 'bra', 'BraA01t01348Z' => 'bra', 'BraA03t12347Z' => 'bra', 'BraA03t12775Z' => 'bra', 'BraA03t14439Z' => 'bra', 'BraA04t15860Z' => 'bra', 'BraA05t19511Z' => 'bra', 'BraA05t22746Z' => 'bra', 'BraA09t35767Z' => 'bra', 'BraA09t40732Z' => 'bra', 'BraA10t45233Z' => 'bra', 'C03p38720' => 'bna', 'C03p43680' => 'bna', 'C04p06350' => 'bna', 'C04p31800' => 'bna', 'C05p58680' => 'bna', 'C07p52110' => 'bna', 'C08p35760' => 'bna', 'C09p01050' => 'bna', 'C09p72600' => 'bna', 'CAN.G106.2' => 'can', 'CAN.G1482.1' => 'can', 'CAN.G324.12' => 'can', 'CAN.G388.20' => 'can', 'CAN.G412.7' => 'can', 'CAN.G694.32' => 'can', 'CAN.G92.12' => 'can', 'CANSAT11G2353' => 'cansat', 'CANSAT21G1398' => 'cansat', 'CANSAT56G2456' => 'cansat', 'CANSAT56G3031' => 'cansat', 'CANSAT56G4539' => 'cansat', 'CARHR083680' => 'chi', 'CARHR171190' => 'chi', 'CARHR209010' => 'chi', 'CARHR229680' => 'chi', 'CARHR249490' => 'chi', 'Carub.0003s0844' => 'cru', 'Carub.0005s2755' => 'cru', 'Carub.0006s0322' => 'cru', 'Carub.0006s3586' => 'cru', 'Carub.0007s1855' => 'cru', 'Ca_07808_v3' => 'car', 'Ca_09535_v3' => 'car', 'Ca_10548_v3' => 'car', 'Ca_19913_v3' => 'car', 'Ca_19916_v3' => 'car', 'Ca_19975_v3' => 'car', 'CBR_g22876' => 'cbr', 'CBR_g22879' => 'cbr', 'CBR_g38491' => 'cbr', 'CBR_g54185' => 'cbr', 'CBR_g54190' => 'cbr', 'Cc02_g11020' => 'ccan', 'Cc02_g23920' => 'ccan', 'Cc02_g39860' => 'ccan', 'Cc02_g39870' => 'ccan', 'Cc03_g06760' => 'ccan', 'Cc06_g02450' => 'ccan', 'Cc09_g09450' => 'ccan', 'CDE02G1959' => 'cde', 'CDE04G0600' => 'cde', 'CDE07G1996' => 'cde', 'CDE07G2078' => 'cde', 'CDE11G0611' => 'cde', 'Cfa001683' => 'cfa', 'Cfa001734' => 'cfa', 'Cfa001737' => 'cfa', 'Cfa003751' => 'cfa', 'Cfa012019' => 'cfa', 'Cfa017353' => 'cfa', 'Cfa017732' => 'cfa', 'Cfa022464' => 'cfa', 'Ciclev10012400m.g' => 'ccl', 'Ciclev10021242m.g' => 'ccl', 'Ciclev10021302m.g' => 'ccl', 'Ciclev10021463m.g' => 'ccl', 'Ciclev10032359m.g' => 'ccl', 'CiPaw.01G081000' => 'cil', 'CiPaw.01G262500' => 'cil', 'CiPaw.01G269800' => 'cil', 'CiPaw.02G168400' => 'cil', 'CiPaw.05G119500' => 'cil', 'CiPaw.11G147300' => 'cil', 'ClCG01G003630' => 'cla', 'ClCG05G000510' => 'cla', 'ClCG05G002300' => 'cla', 'ClCG08G007650' => 'cla', 'ClCG10G021250' => 'cla', 'COL.COLO4_06218' => 'col', 'COL.COLO4_12538' => 'col', 'COL.COLO4_14775' => 'col', 'COL.COLO4_23875' => 'col', 'Cpa.g.sc141.16' => 'cpa', 'Cpa.g.sc169.16' => 'cpa', 'Cpa.g.sc244.4' => 'cpa', 'Cpa.g.sc244.5' => 'cpa', 'Cpa.g.sc29.87' => 'cpa', 'Cpa.g.sc53.115' => 'cpa', 'Cre03.g207502' => 'cre', 'Cre06.g277000' => 'cre', 'Cre09.g394050' => 'cre', 'CsaV3_3G007680' => 'csa', 'CsaV3_3G009710' => 'csa', 'CsaV3_3G034790' => 'csa', 'CsaV3_5G003750' => 'csa', 'CsaV3_6G036620' => 'csa', 'CSS0002288' => 'camsi', 'CSS0011250' => 'camsi', 'CSS0021619' => 'camsi', 'CSS0046701' => 'camsi', 'DCAR_006420' => 'dca', 'DCAR_006865' => 'dca', 'DCAR_008558' => 'dca', 'DCAR_028754' => 'dca', 'DCAR_028755' => 'dca', 'Dinv31218' => 'din', 'Dinv32371' => 'din', 'Dinv34250' => 'din', 'Dinv37156' => 'din', 'Dinv43704' => 'din', 'Duzib093G1811' => 'dzi', 'Duzib106G1622' => 'dzi', 'Duzib114G0504' => 'dzi', 'Duzib128G0338' => 'dzi', 'Duzib128G1577' => 'dzi', 'Duzib133G0104' => 'dzi', 'Duzib133G1080' => 'dzi', 'Duzib138G0324' => 'dzi', 'Duzib138G0394' => 'dzi', 'Duzib205G0122' => 'dzi', 'Duzib268G1020' => 'dzi', 'Duzib268G1359' => 'dzi', 'ECA232G3929' => 'eca', 'ECA236G2210' => 'eca', 'ECA236G2287' => 'eca', 'ECA240G4568' => 'eca', 'ECA247G0894' => 'eca', 'EL10Ac1g00200' => 'bvu', 'EL10Ac1g00886' => 'bvu', 'EL10As1g23091' => 'bvu', 'EL10As1g23092' => 'bvu', 'Eucgr.A01284' => 'egr', 'Eucgr.A01285' => 'egr', 'Eucgr.D02456' => 'egr', 'Eucgr.E00018' => 'egr', 'Eucgr.E01439' => 'egr', 'Eucgr.G02859' => 'egr', 'FAN01G0168' => 'fan', 'FAN01G0453' => 'fan', 'FAN01G2761' => 'fan', 'FAN02G1239' => 'fan', 'FAN03G0645' => 'fan', 'FAN03G2707' => 'fan', 'FAN03G2978' => 'fan', 'FAN04G0227' => 'fan', 'FAN06G0091' => 'fan', 'FAN06G1418' => 'fan', 'FAN06G1512' => 'fan', 'FAN06G1986' => 'fan', 'FAN06G2905' => 'fan', 'FAN06G4325' => 'fan', 'FAN08G0033' => 'fan', 'FAN09G0642' => 'fan', 'FAN10G1763' => 'fan', 'FAN10G2026' => 'fan', 'FAN10G2513' => 'fan', 'FAN10G3402' => 'fan', 'FAN10G3564' => 'fan', 'FAN10G3987' => 'fan', 'FAN13G1490' => 'fan', 'FAN14G5857' => 'fan', 'FAN18G1188' => 'fan', 'FvH4_5g00750' => 'fve', 'FvH4_6g13410' => 'fve', 'FvH4_7g11740' => 'fve', 'FvH4_7g17410' => 'fve', 'FvH4_7g18860' => 'fve', 'Glyma.01G099100' => 'gma', 'Glyma.01G142300' => 'gma', 'Glyma.03G025500' => 'gma', 'Glyma.03G069700' => 'gma', 'Glyma.03G260000' => 'gma', 'Glyma.09G269800' => 'gma', 'Glyma.10G208700' => 'gma', 'Glyma.18G220400' => 'gma', 'Glyma.20G182000' => 'gma', 'Gohir.A01G221726' => 'ghi', 'Gohir.A07G134600' => 'ghi', 'Gohir.A07G146000' => 'ghi', 'Gohir.A08G173900' => 'ghi', 'Gohir.A09G194900' => 'ghi', 'Gohir.A10G204100' => 'ghi', 'Gohir.A11G080600' => 'ghi', 'Gohir.A11G327500' => 'ghi', 'Gohir.A12G101800' => 'ghi', 'Gohir.D01G211200' => 'ghi', 'Gohir.D07G139200' => 'ghi', 'Gohir.D07G152100' => 'ghi', 'Gohir.D08G192600' => 'ghi', 'Gohir.D09G189200' => 'ghi', 'Gohir.D10G212000' => 'ghi', 'Gohir.D11G085200' => 'ghi', 'Gohir.D11G346400' => 'ghi', 'Gohir.D12G104800' => 'ghi', 'Gorai.001G151300' => 'gra', 'Gorai.001G174100' => 'gra', 'Gorai.002G257000' => 'gra', 'Gorai.004G202600' => 'gra', 'Gorai.007G090900' => 'gra', 'Gorai.007G376700' => 'gra', 'Gorai.008G114100' => 'gra', 'Gorai.011G237900' => 'gra', 'GSVIVG01005450001' => 'vvi', 'GSVIVG01016232001' => 'vvi', 'GSVIVG01026157001' => 'vvi', 'GSVIVG01027419001' => 'vvi', 'GSVIVG01027631001' => 'vvi', 'GSVIVG01034143001' => 'vvi', 'HanXRQChr03g0093921' => 'han', 'HanXRQChr04g0120001' => 'han', 'HanXRQChr04g0122561' => 'han', 'HanXRQChr09g0246851' => 'han', 'HanXRQChr10g0293311' => 'han', 'HanXRQChr13g0425231' => 'han', 'HanXRQChr16g0532571' => 'han', 'Haze_09050' => 'cav', 'Haze_15715' => 'cav', 'Haze_15716' => 'cav', 'Haze_16803' => 'cav', 'Haze_16850' => 'cav', 'Hma1.2p1_0301F.1_g118655' => 'hma', 'Hma1.2p1_0309F.1_g120590' => 'hma', 'Hma1.2p1_0936F.1_g238900' => 'hma', 'Hma1.2p1_3552F.1_g336740' => 'hma', 'HPP92_003520' => 'vpl', 'HPP92_006628' => 'vpl', 'HPP92_006645' => 'vpl', 'HPP92_014669' => 'vpl', 'HPP92_015077' => 'vpl', 'Hund16742' => 'sun', 'Hund17022' => 'sun', 'Lalb_Chr02g0152131' => 'lal', 'Lalb_Chr05g0225371' => 'lal', 'Lalb_Chr07g0189841' => 'lal', 'Lalb_Chr07g0192961' => 'lal', 'Lalb_Chr12g0208221' => 'lal', 'Lalb_Chr13g0291211' => 'lal', 'Lalb_Chr13g0291781' => 'lal', 'Lalb_Chr18g0044651' => 'lal', 'Lalb_Chr21g0313731' => 'lal', 'Lj1g0022533' => 'lja', 'Lj2A18T50' => 'lonja', 'Lj2A92G93' => 'lonja', 'Lj3A965T73' => 'lonja', 'Lj3g0000673' => 'lja', 'Lj3g0002666' => 'lja', 'Lj4g0016985' => 'lja', 'Lj5g0003625' => 'lja', 'Lj7A529G36' => 'lonja', 'Lj9A569T49' => 'lonja', 'Lj9A604T63' => 'lonja', 'Lsat_1_v5_gn_3_132060' => 'lsa', 'Lsat_1_v5_gn_4_68941' => 'lsa', 'Lsat_1_v5_gn_5_95580' => 'lsa', 'Lsat_1_v5_gn_7_161' => 'lsa', 'Lsat_1_v5_gn_7_7041' => 'lsa', 'Lsat_1_v5_gn_9_33481' => 'lsa', 'Lsat_1_v5_gn_9_68260' => 'lsa', 'Manes.01G073100' => 'mes', 'Manes.01G266300' => 'mes', 'Manes.02G033300' => 'mes', 'Manes.05G017900' => 'mes', 'Manes.05G046100' => 'mes', 'Manes.08G080900' => 'mes', 'Manes.10G049400' => 'mes', 'Mapoly0009s0186' => 'mpo', 'Mapoly0036s0118' => 'mpo', 'Mapoly0101s0046' => 'mpo', 'MBI04_g30218_MAGBIO' => 'mbi', 'MBI04_g35564_MAGBIO' => 'mbi', 'MBI12_g34011_MAGBIO' => 'mbi', 'MBI14_g04655_MAGBIO' => 'mbi', 'MCO07G653' => 'mco', 'MCO10G173' => 'mco', 'MD01G1087100' => 'mdo', 'MD01G1104200' => 'mdo', 'MD02G1205100' => 'mdo', 'MD04G1079200' => 'mdo', 'MD04G1131400' => 'mdo', 'MD07G1121600' => 'mdo', 'MD07G1157300' => 'mdo', 'MD07G1171000' => 'mdo', 'MD12G1144500' => 'mdo', 'Medtr1g094610' => 'mtr', 'Medtr4g021795' => 'mtr', 'Medtr4g023760' => 'mtr', 'Medtr7g118050' => 'mtr', 'MELO3C005582.2' => 'cme', 'MELO3C005989.2' => 'cme', 'MELO3C006192.2' => 'cme', 'MELO3C009248.2' => 'cme', 'MELO3C019817.2' => 'cme', 'Migut.B01625' => 'egut', 'Migut.B01915' => 'egut', 'Migut.F01721' => 'egut', 'Migut.J00314' => 'egut', 'MSTRG.20742' => 'ama', 'MSTRG.8134' => 'ama', 'Nitab4.5_0000096g0010' => 'nta', 'Nitab4.5_0000202g0030' => 'nta', 'Nitab4.5_0000216g0370' => 'nta', 'Nitab4.5_0000457g0230' => 'nta', 'Nitab4.5_0001702g0170' => 'nta', 'Nitab4.5_0003607g0010' => 'nta', 'Nitab4.5_0004917g0020' => 'nta', 'Nitab4.5_0007059g0010' => 'nta', 'Nitab4.5_0007184g0010' => 'nta', 'Nitab4.5_0007346g0020' => 'nta', 'Nn1g00410' => 'nnu', 'Nn1g01252' => 'nnu', 'Nn2g11168' => 'nnu', 'Nn2g13403' => 'nnu', 'Nn2g13760' => 'nnu', 'Nn4g26380' => 'nnu', 'Oeu000806.2' => 'oeu', 'Oeu005788.1' => 'oeu', 'Oeu006900.3' => 'oeu', 'Oeu007797.1' => 'oeu', 'Oeu011932.1' => 'oeu', 'Oeu022739.1' => 'oeu', 'Oeu037918.1' => 'oeu', 'Oeu055490.2' => 'oeu', 'Os01g0844400' => 'osa', 'Os02g0819100' => 'osa', 'Os03g0804300' => 'osa', 'Os05g0458000' => 'osa', 'Os07g0467800' => 'osa', 'Os12g0602200' => 'osa', 'Peaxi162Scf00013g03444' => 'pax', 'Peaxi162Scf00094g01120' => 'pax', 'Peaxi162Scf00191g01211' => 'pax', 'Peaxi162Scf00238g01110' => 'pax', 'Peaxi162Scf00330g00719' => 'pax', 'Peaxi162Scf00627g00018' => 'pax', 'PGR031G2686' => 'pgr', 'PGR042G0809' => 'pgr', 'PGR142G0193' => 'pgr', 'PGSC0003DMG400011066' => 'stu', 'PGSC0003DMG400012041' => 'stu', 'PGSC0003DMG400013678' => 'stu', 'PGSC0003DMG400023477' => 'stu', 'PGSC0003DMG400025956' => 'stu', 'PGSC0003DMG401019151' => 'stu', 'Phvul.006G116400' => 'pvu', 'Phvul.007G097300' => 'pvu', 'Phvul.010G015000' => 'pvu', 'Phvul.010G083900' => 'pvu', 'Potri.001G117100' => 'ptr', 'Potri.002G147300' => 'ptr', 'Potri.003G115600' => 'ptr', 'Potri.006G087400' => 'ptr', 'Potri.010G226100' => 'ptr', 'Potri.014G069200' => 'ptr', 'Potri.014G104000' => 'ptr', 'Potri.016G100200' => 'ptr', 'Pp3c10_20450' => 'ppa', 'Pp3c1_42400' => 'ppa', 'Pp3c3_24390' => 'ppa', 'Pp3c3_2860' => 'ppa', 'PRCOL_00003193' => 'pco', 'Prupe.2G144500' => 'ppe', 'Prupe.2G195700' => 'ppe', 'Prupe.2G209800' => 'ppe', 'Prupe.5G080000' => 'ppe', 'Prupe.6G257900' => 'ppe', 'Psat3g001160' => 'psa', 'Psat6g181880' => 'psa', 'Psat7g233720' => 'psa', 'PSO063G7587' => 'pso', 'PSO339G2145' => 'pso', 'PSO339G3369' => 'pso', 'PSO478G2747' => 'pso', 'PSO513G0140' => 'pso', 'PSO782G1614' => 'pso', 'PSO782G4889' => 'pso', 'PSO782G5485' => 'pso', 'PSO801G0241' => 'pso', 'QL07p048854' => 'qlo', 'QL08p046745' => 'qlo', 'QL08p052606' => 'qlo', 'QL08p053414' => 'qlo', 'QL08p054868' => 'qlo', 'RcHm_v2.0_Chr1g0350251' => 'rch', 'RcHm_v2.0_Chr1g0360851' => 'rch', 'RcHm_v2.0_Chr1g0362791' => 'rch', 'RcHm_v2.0_Chr3g0466281' => 'rch', 'RcHm_v2.0_Chr7g0201481' => 'rch', 'Rhsim01G0148600' => 'rsi', 'Rhsim05G0194400' => 'rsi', 'Rhsim07G0000700' => 'rsi', 'Rhsim07G0000800' => 'rsi', 'Rhsim07G0027900' => 'rsi', 'Rhsim09G0149500' => 'rsi', 'RhsimUnG0186900' => 'rsi', 'Sabra01G0089900' => 'sbr', 'Sabra02G0114700' => 'sbr', 'Sabra02G0116300' => 'sbr', 'Sabra03G0080100' => 'sbr', 'Sabra08G0024300' => 'sbr', 'Sabra10G0174300' => 'sbr', 'Sabra14G0048900' => 'sbr', 'Sabra14G0076500' => 'sbr', 'SalBow5G2513' => 'sbo', 'Sc01g0002300' => 'sci', 'Sc01g0004450' => 'sci', 'Sc06g0001680' => 'sci', 'Sc23g0003580' => 'sci', 'Sed0000913' => 'sed', 'Sed0001655' => 'sed', 'Sed0007745' => 'sed', 'Sed0010951' => 'sed', 'Sed0017599' => 'sed', 'Sed0021405' => 'sed', 'Sed0022810' => 'sed', 'SEGI_07099' => 'sgi', 'SEGI_11931' => 'sgi', 'SEGI_13187' => 'sgi', 'SEGI_29958' => 'sgi', 'SEGI_36351' => 'sgi', 'SGA_v2.0_scaffold126G33770' => 'sas', 'SGA_v2.0_scaffold153G37003' => 'sas', 'SGA_v2.0_scaffold2G01359' => 'sas', 'SGA_v2.0_scaffold5G03064' => 'sas', 'SGA_v2.0_scaffold95G28903' => 'sas', 'SHI12701' => 'shi', 'SHI26410' => 'shi', 'SHI38997' => 'shi', 'SHI53759' => 'shi', 'SHI53886' => 'shi', 'SHI54714' => 'shi', 'SMO011G0041' => 'smo', 'SMO146G0251' => 'smo', 'SMO160G0004' => 'smo', 'SMO174G0057' => 'smo', 'SMO244G0089' => 'smo', 'SMO296G0011' => 'smo', 'Solyc01g091280.3' => 'sly', 'Solyc05g047610.3' => 'sly', 'Solyc05g047640.3' => 'sly', 'Solyc05g055630.3' => 'sly', 'Solyc10g018160.2' => 'sly', 'Solyc10g084820.2' => 'sly', 'Solyc10g086565.2' => 'sly', 'Sopen01g037030' => 'spe', 'Sopen05g027920' => 'spe', 'Sopen05g034070' => 'spe', 'Sopen10g007260' => 'spe', 'Sopen10g034260' => 'spe', 'Sopen10g035950' => 'spe', 'Sp3g07710' => 'spa', 'Sp4g27420' => 'spa', 'Sp5g02450' => 'spa', 'Sp6g01280' => 'spa', 'Sp6g38480' => 'spa', 'Sp7g20780' => 'spa', 'TAR374G1413' => 'tar', 'TAR623G1777' => 'tar', 'TAR629G2370' => 'tar', 'TAR633G1759' => 'tar', 'TAR636G3387' => 'tar', 'THA.LOC104802447' => 'tha', 'THA.LOC104813916' => 'tha', 'THA.LOC104816423' => 'tha', 'THA.LOC104817246' => 'tha', 'THA.LOC104825895' => 'tha', 'Thecc.01G335200' => 'tca', 'Thecc.01G377400' => 'tca', 'Thecc.03G262200' => 'tca', 'Thecc.05G036800' => 'tca', 'Thecc.10G080500' => 'tca', 'Thecc.10G080800' => 'tca', 'Thhalv10001560m.g' => 'esa', 'Thhalv10006120m.g' => 'esa', 'Thhalv10014375m.g' => 'esa', 'Thhalv10021264m.g' => 'esa', 'Thhalv10028856m.g' => 'esa', 'TPR.G1914' => 'tpr', 'TPR.G4757' => 'tpr', 'TPR.G5595' => 'tpr', 'TWI14G0952' => 'twi', 'TWI14G1307' => 'twi', 'TWI38G2143' => 'twi', 'TWI59G0826' => 'twi', 'TWI77G0527' => 'twi', 'TWI81G0150' => 'twi', 'unitig_21.g21018' => 'ugi', 'unitig_26.g9725' => 'ugi', 'unitig_744.g24653' => 'ugi', 'unitig_749.g13778' => 'ugi', 'unitig_899.g15035' => 'ugi', 'vmacro04296' => 'vma', 'vmacro04852' => 'vma', 'vmacro13404' => 'vma', 'vmacro20169' => 'vma', 'vmacro21014' => 'vma', 'VMungo0331G0237' => 'vmu', 'VMungo0331G0706' => 'vmu', 'VMungo0331G1361' => 'vmu', 'VMungo0331G1489' => 'vmu', 'VMungo0540G1037' => 'vmu', 'VMungo0720G2487' => 'vmu', 'VMungo0720G2721' => 'vmu', 'Zm00001eb086860' => 'zma', 'Zm00001eb104760' => 'zma', 'Zm00001eb148220' => 'zma', 'Zm00001eb259030' => 'zma', 'Zm00001eb289590' => 'zma', 'Zm00001eb420150' => 'zma' ) $gf_id = 'HOM05D000968' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000968' ) $data_identifier = 'HOM05D000968' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 19, 'bol' => (int) 9, 'bra' => (int) 12, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 5, 'ccan' => (int) 7, 'cde' => (int) 5, 'cfa' => (int) 8, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 4, 'dca' => (int) 5, 'din' => (int) 5, 'dzi' => (int) 12, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 25, 'fve' => (int) 5, 'gma' => (int) 9, 'ghi' => (int) 18, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 7, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 5, 'sun' => (int) 2, 'lal' => (int) 9, 'lja' => (int) 5, 'lonja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 9, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 2, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 3, 'stu' => (int) 6, 'pvu' => (int) 4, 'ptr' => (int) 8, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 3, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 1, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 5, 'sas' => (int) 5, 'shi' => (int) 6, 'smo' => (int) 6, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 3, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420150' $species_info = array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ) $local_species = 'amhyb' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000968', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p31690' => 'bna', 'A03p36040' => 'bna', 'A03p53730' => 'bna', 'A04p01410' => 'bna', 'A05p05420' => 'bna', 'A05p39630' => 'bna', 'A05p39640' => 'bna', 'A09p00970' => 'bna', 'A09p53060' => 'bna', 'A10p31890' => 'bna', 'Aa31LG10G15040' => 'aar', 'Aa31LG1G21090' => 'aar', 'Aa31LG1G26900' => 'aar', 'Aa31LG3G1820' => 'aar', 'Aa31LG5G1100' => 'aar', 'Aa31LG6G4740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2265' => 'aag', 'Actinidia07998' => 'ach', 'Actinidia11266' => 'ach', 'Actinidia12682' => 'ach', 'Actinidia26479' => 'ach', 'Actinidia31406' => 'ach', 'Actinidia32437' => 'ach', 'Actinidia38862' => 'ach', 'Ah.05g174230' => 'amhyb', 'Ah.05g179070' => 'amhyb', 'Ah.05g179090' => 'amhyb', 'Ah.12g059950' => 'amhyb', 'AL3G20480' => 'aly', 'AL4G44520' => 'aly', 'AL5G43110' => 'aly', 'AL6G13890' => 'aly', 'AL6G52620' => 'aly', 'AL7G30830' => 'aly', 'Aqoxy1G00899' => 'aox', 'Aqoxy5G04333' => 'aox', 'Aqoxy7G00641' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3IZ0NN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4EF6AW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W9P8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79GA3M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C43NQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFCU6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G95YVJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCHK29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LU1UG8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX91RN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGB4B1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8DA0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9H7JI' => 'arhy', 'AT3G09320' => 'ath', 'AT3G60800' => 'ath', 'AT4G00840' => 'ath', 'AT4G22750' => 'ath', 'AT5G04270' => 'ath', 'ATR0090G003' => 'atr', 'ATR0559G349' => 'atr', 'ATR0680G261' => 'atr', 'ATR0810G048' => 'atr', 'Atru.chr12.831' => 'acertr', 'Atru.chr5.303' => 'acertr', 'Atru.chr5.748' => 'acertr', 'Atru.chr8.1999' => 'acertr', 'Atru.chr9.1436' => 'acertr', 'AUR62004211' => 'cqu', 'AUR62004548' => 'cqu', 'AUR62013637' => 'cqu', 'AUR62022662' => 'cqu', 'AUR62025777' => 'cqu', 'AUR62042386' => 'cqu', 'BcaB01g02310' => 'bca', 'BcaB01g06062' => 'bca', 'BcaB02g08975' => 'bca', 'BcaB02g08980' => 'bca', 'BcaC01g04228' => 'bca', 'BcaC01g06830' => 'bca', 'BcaC02g10186' => 'bca', 'BcaC02g12214' => 'bca', 'BcaC04g24101' => 'bca', 'BcaC05g29520' => 'bca', 'BcaC05g29661' => 'bca', 'BcaC06g32130' => 'bca', 'BcaC06g32131' => 'bca', 'BcaC07g40601' => 'bca', 'BcaC07g42641' => 'bca', 'BcaNung01038' => 'bca', 'BcaNung01676' => 'bca', 'BcaNung02480' => 'bca', 'BcaNung07376' => 'bca', 'BolC3t16146H' => 'bol', 'BolC3t16637H' => 'bol', 'BolC4t22257H' => 'bol', 'BolC4t24728H' => 'bol', 'BolC5t34517H' => 'bol', 'BolC7t45703H' => 'bol', 'BolC8t51166H' => 'bol', 'BolC9t53038H' => 'bol', 'BolC9t60000H' => 'bol', 'BraA01t01345Z' => 'bra', 'BraA01t01346Z' => 'bra', 'BraA01t01348Z' => 'bra', 'BraA03t12347Z' => 'bra', 'BraA03t12775Z' => 'bra', 'BraA03t14439Z' => 'bra', 'BraA04t15860Z' => 'bra', 'BraA05t19511Z' => 'bra', 'BraA05t22746Z' => 'bra', 'BraA09t35767Z' => 'bra', 'BraA09t40732Z' => 'bra', 'BraA10t45233Z' => 'bra', 'C03p38720' => 'bna', 'C03p43680' => 'bna', 'C04p06350' => 'bna', 'C04p31800' => 'bna', 'C05p58680' => 'bna', 'C07p52110' => 'bna', 'C08p35760' => 'bna', 'C09p01050' => 'bna', 'C09p72600' => 'bna', 'CAN.G106.2' => 'can', 'CAN.G1482.1' => 'can', 'CAN.G324.12' => 'can', 'CAN.G388.20' => 'can', 'CAN.G412.7' => 'can', 'CAN.G694.32' => 'can', 'CAN.G92.12' => 'can', 'CANSAT11G2353' => 'cansat', 'CANSAT21G1398' => 'cansat', 'CANSAT56G2456' => 'cansat', 'CANSAT56G3031' => 'cansat', 'CANSAT56G4539' => 'cansat', 'CARHR083680' => 'chi', 'CARHR171190' => 'chi', 'CARHR209010' => 'chi', 'CARHR229680' => 'chi', 'CARHR249490' => 'chi', 'Carub.0003s0844' => 'cru', 'Carub.0005s2755' => 'cru', 'Carub.0006s0322' => 'cru', 'Carub.0006s3586' => 'cru', 'Carub.0007s1855' => 'cru', 'Ca_07808_v3' => 'car', 'Ca_09535_v3' => 'car', 'Ca_10548_v3' => 'car', 'Ca_19913_v3' => 'car', 'Ca_19916_v3' => 'car', 'Ca_19975_v3' => 'car', 'CBR_g22876' => 'cbr', 'CBR_g22879' => 'cbr', 'CBR_g38491' => 'cbr', 'CBR_g54185' => 'cbr', 'CBR_g54190' => 'cbr', 'Cc02_g11020' => 'ccan', 'Cc02_g23920' => 'ccan', 'Cc02_g39860' => 'ccan', 'Cc02_g39870' => 'ccan', 'Cc03_g06760' => 'ccan', 'Cc06_g02450' => 'ccan', 'Cc09_g09450' => 'ccan', 'CDE02G1959' => 'cde', 'CDE04G0600' => 'cde', 'CDE07G1996' => 'cde', 'CDE07G2078' => 'cde', 'CDE11G0611' => 'cde', 'Cfa001683' => 'cfa', 'Cfa001734' => 'cfa', 'Cfa001737' => 'cfa', 'Cfa003751' => 'cfa', 'Cfa012019' => 'cfa', 'Cfa017353' => 'cfa', 'Cfa017732' => 'cfa', 'Cfa022464' => 'cfa', 'Ciclev10012400m.g' => 'ccl', 'Ciclev10021242m.g' => 'ccl', 'Ciclev10021302m.g' => 'ccl', 'Ciclev10021463m.g' => 'ccl', 'Ciclev10032359m.g' => 'ccl', 'CiPaw.01G081000' => 'cil', 'CiPaw.01G262500' => 'cil', 'CiPaw.01G269800' => 'cil', 'CiPaw.02G168400' => 'cil', 'CiPaw.05G119500' => 'cil', 'CiPaw.11G147300' => 'cil', 'ClCG01G003630' => 'cla', 'ClCG05G000510' => 'cla', 'ClCG05G002300' => 'cla', 'ClCG08G007650' => 'cla', 'ClCG10G021250' => 'cla', 'COL.COLO4_06218' => 'col', 'COL.COLO4_12538' => 'col', 'COL.COLO4_14775' => 'col', 'COL.COLO4_23875' => 'col', 'Cpa.g.sc141.16' => 'cpa', 'Cpa.g.sc169.16' => 'cpa', 'Cpa.g.sc244.4' => 'cpa', 'Cpa.g.sc244.5' => 'cpa', 'Cpa.g.sc29.87' => 'cpa', 'Cpa.g.sc53.115' => 'cpa', 'Cre03.g207502' => 'cre', 'Cre06.g277000' => 'cre', 'Cre09.g394050' => 'cre', 'CsaV3_3G007680' => 'csa', 'CsaV3_3G009710' => 'csa', 'CsaV3_3G034790' => 'csa', 'CsaV3_5G003750' => 'csa', 'CsaV3_6G036620' => 'csa', 'CSS0002288' => 'camsi', 'CSS0011250' => 'camsi', 'CSS0021619' => 'camsi', 'CSS0046701' => 'camsi', 'DCAR_006420' => 'dca', 'DCAR_006865' => 'dca', 'DCAR_008558' => 'dca', 'DCAR_028754' => 'dca', 'DCAR_028755' => 'dca', 'Dinv31218' => 'din', 'Dinv32371' => 'din', 'Dinv34250' => 'din', 'Dinv37156' => 'din', 'Dinv43704' => 'din', 'Duzib093G1811' => 'dzi', 'Duzib106G1622' => 'dzi', 'Duzib114G0504' => 'dzi', 'Duzib128G0338' => 'dzi', 'Duzib128G1577' => 'dzi', 'Duzib133G0104' => 'dzi', 'Duzib133G1080' => 'dzi', 'Duzib138G0324' => 'dzi', 'Duzib138G0394' => 'dzi', 'Duzib205G0122' => 'dzi', 'Duzib268G1020' => 'dzi', 'Duzib268G1359' => 'dzi', 'ECA232G3929' => 'eca', 'ECA236G2210' => 'eca', 'ECA236G2287' => 'eca', 'ECA240G4568' => 'eca', 'ECA247G0894' => 'eca', 'EL10Ac1g00200' => 'bvu', 'EL10Ac1g00886' => 'bvu', 'EL10As1g23091' => 'bvu', 'EL10As1g23092' => 'bvu', 'Eucgr.A01284' => 'egr', 'Eucgr.A01285' => 'egr', 'Eucgr.D02456' => 'egr', 'Eucgr.E00018' => 'egr', 'Eucgr.E01439' => 'egr', 'Eucgr.G02859' => 'egr', 'FAN01G0168' => 'fan', 'FAN01G0453' => 'fan', 'FAN01G2761' => 'fan', 'FAN02G1239' => 'fan', 'FAN03G0645' => 'fan', 'FAN03G2707' => 'fan', 'FAN03G2978' => 'fan', 'FAN04G0227' => 'fan', 'FAN06G0091' => 'fan', 'FAN06G1418' => 'fan', 'FAN06G1512' => 'fan', 'FAN06G1986' => 'fan', 'FAN06G2905' => 'fan', 'FAN06G4325' => 'fan', 'FAN08G0033' => 'fan', 'FAN09G0642' => 'fan', 'FAN10G1763' => 'fan', 'FAN10G2026' => 'fan', 'FAN10G2513' => 'fan', 'FAN10G3402' => 'fan', 'FAN10G3564' => 'fan', 'FAN10G3987' => 'fan', 'FAN13G1490' => 'fan', 'FAN14G5857' => 'fan', 'FAN18G1188' => 'fan', 'FvH4_5g00750' => 'fve', 'FvH4_6g13410' => 'fve', 'FvH4_7g11740' => 'fve', 'FvH4_7g17410' => 'fve', 'FvH4_7g18860' => 'fve', 'Glyma.01G099100' => 'gma', 'Glyma.01G142300' => 'gma', 'Glyma.03G025500' => 'gma', 'Glyma.03G069700' => 'gma', 'Glyma.03G260000' => 'gma', 'Glyma.09G269800' => 'gma', 'Glyma.10G208700' => 'gma', 'Glyma.18G220400' => 'gma', 'Glyma.20G182000' => 'gma', 'Gohir.A01G221726' => 'ghi', 'Gohir.A07G134600' => 'ghi', 'Gohir.A07G146000' => 'ghi', 'Gohir.A08G173900' => 'ghi', 'Gohir.A09G194900' => 'ghi', 'Gohir.A10G204100' => 'ghi', 'Gohir.A11G080600' => 'ghi', 'Gohir.A11G327500' => 'ghi', 'Gohir.A12G101800' => 'ghi', 'Gohir.D01G211200' => 'ghi', 'Gohir.D07G139200' => 'ghi', 'Gohir.D07G152100' => 'ghi', 'Gohir.D08G192600' => 'ghi', 'Gohir.D09G189200' => 'ghi', 'Gohir.D10G212000' => 'ghi', 'Gohir.D11G085200' => 'ghi', 'Gohir.D11G346400' => 'ghi', 'Gohir.D12G104800' => 'ghi', 'Gorai.001G151300' => 'gra', 'Gorai.001G174100' => 'gra', 'Gorai.002G257000' => 'gra', 'Gorai.004G202600' => 'gra', 'Gorai.007G090900' => 'gra', 'Gorai.007G376700' => 'gra', 'Gorai.008G114100' => 'gra', 'Gorai.011G237900' => 'gra', 'GSVIVG01005450001' => 'vvi', 'GSVIVG01016232001' => 'vvi', 'GSVIVG01026157001' => 'vvi', 'GSVIVG01027419001' => 'vvi', 'GSVIVG01027631001' => 'vvi', 'GSVIVG01034143001' => 'vvi', 'HanXRQChr03g0093921' => 'han', 'HanXRQChr04g0120001' => 'han', 'HanXRQChr04g0122561' => 'han', 'HanXRQChr09g0246851' => 'han', 'HanXRQChr10g0293311' => 'han', 'HanXRQChr13g0425231' => 'han', 'HanXRQChr16g0532571' => 'han', 'Haze_09050' => 'cav', 'Haze_15715' => 'cav', 'Haze_15716' => 'cav', 'Haze_16803' => 'cav', 'Haze_16850' => 'cav', 'Hma1.2p1_0301F.1_g118655' => 'hma', 'Hma1.2p1_0309F.1_g120590' => 'hma', 'Hma1.2p1_0936F.1_g238900' => 'hma', 'Hma1.2p1_3552F.1_g336740' => 'hma', 'HPP92_003520' => 'vpl', 'HPP92_006628' => 'vpl', 'HPP92_006645' => 'vpl', 'HPP92_014669' => 'vpl', 'HPP92_015077' => 'vpl', 'Hund16742' => 'sun', 'Hund17022' => 'sun', 'Lalb_Chr02g0152131' => 'lal', 'Lalb_Chr05g0225371' => 'lal', 'Lalb_Chr07g0189841' => 'lal', 'Lalb_Chr07g0192961' => 'lal', 'Lalb_Chr12g0208221' => 'lal', 'Lalb_Chr13g0291211' => 'lal', 'Lalb_Chr13g0291781' => 'lal', 'Lalb_Chr18g0044651' => 'lal', 'Lalb_Chr21g0313731' => 'lal', 'Lj1g0022533' => 'lja', 'Lj2A18T50' => 'lonja', 'Lj2A92G93' => 'lonja', 'Lj3A965T73' => 'lonja', 'Lj3g0000673' => 'lja', 'Lj3g0002666' => 'lja', 'Lj4g0016985' => 'lja', 'Lj5g0003625' => 'lja', 'Lj7A529G36' => 'lonja', 'Lj9A569T49' => 'lonja', 'Lj9A604T63' => 'lonja', 'Lsat_1_v5_gn_3_132060' => 'lsa', 'Lsat_1_v5_gn_4_68941' => 'lsa', 'Lsat_1_v5_gn_5_95580' => 'lsa', 'Lsat_1_v5_gn_7_161' => 'lsa', 'Lsat_1_v5_gn_7_7041' => 'lsa', 'Lsat_1_v5_gn_9_33481' => 'lsa', 'Lsat_1_v5_gn_9_68260' => 'lsa', 'Manes.01G073100' => 'mes', 'Manes.01G266300' => 'mes', 'Manes.02G033300' => 'mes', 'Manes.05G017900' => 'mes', 'Manes.05G046100' => 'mes', 'Manes.08G080900' => 'mes', 'Manes.10G049400' => 'mes', 'Mapoly0009s0186' => 'mpo', 'Mapoly0036s0118' => 'mpo', 'Mapoly0101s0046' => 'mpo', 'MBI04_g30218_MAGBIO' => 'mbi', 'MBI04_g35564_MAGBIO' => 'mbi', 'MBI12_g34011_MAGBIO' => 'mbi', 'MBI14_g04655_MAGBIO' => 'mbi', 'MCO07G653' => 'mco', 'MCO10G173' => 'mco', 'MD01G1087100' => 'mdo', 'MD01G1104200' => 'mdo', 'MD02G1205100' => 'mdo', 'MD04G1079200' => 'mdo', 'MD04G1131400' => 'mdo', 'MD07G1121600' => 'mdo', 'MD07G1157300' => 'mdo', 'MD07G1171000' => 'mdo', 'MD12G1144500' => 'mdo', 'Medtr1g094610' => 'mtr', 'Medtr4g021795' => 'mtr', 'Medtr4g023760' => 'mtr', 'Medtr7g118050' => 'mtr', 'MELO3C005582.2' => 'cme', 'MELO3C005989.2' => 'cme', 'MELO3C006192.2' => 'cme', 'MELO3C009248.2' => 'cme', 'MELO3C019817.2' => 'cme', 'Migut.B01625' => 'egut', 'Migut.B01915' => 'egut', 'Migut.F01721' => 'egut', 'Migut.J00314' => 'egut', 'MSTRG.20742' => 'ama', 'MSTRG.8134' => 'ama', 'Nitab4.5_0000096g0010' => 'nta', 'Nitab4.5_0000202g0030' => 'nta', 'Nitab4.5_0000216g0370' => 'nta', 'Nitab4.5_0000457g0230' => 'nta', 'Nitab4.5_0001702g0170' => 'nta', 'Nitab4.5_0003607g0010' => 'nta', 'Nitab4.5_0004917g0020' => 'nta', 'Nitab4.5_0007059g0010' => 'nta', 'Nitab4.5_0007184g0010' => 'nta', 'Nitab4.5_0007346g0020' => 'nta', 'Nn1g00410' => 'nnu', 'Nn1g01252' => 'nnu', 'Nn2g11168' => 'nnu', 'Nn2g13403' => 'nnu', 'Nn2g13760' => 'nnu', 'Nn4g26380' => 'nnu', 'Oeu000806.2' => 'oeu', 'Oeu005788.1' => 'oeu', 'Oeu006900.3' => 'oeu', 'Oeu007797.1' => 'oeu', 'Oeu011932.1' => 'oeu', 'Oeu022739.1' => 'oeu', 'Oeu037918.1' => 'oeu', 'Oeu055490.2' => 'oeu', 'Os01g0844400' => 'osa', 'Os02g0819100' => 'osa', 'Os03g0804300' => 'osa', 'Os05g0458000' => 'osa', 'Os07g0467800' => 'osa', 'Os12g0602200' => 'osa', 'Peaxi162Scf00013g03444' => 'pax', 'Peaxi162Scf00094g01120' => 'pax', 'Peaxi162Scf00191g01211' => 'pax', 'Peaxi162Scf00238g01110' => 'pax', 'Peaxi162Scf00330g00719' => 'pax', 'Peaxi162Scf00627g00018' => 'pax', 'PGR031G2686' => 'pgr', 'PGR042G0809' => 'pgr', 'PGR142G0193' => 'pgr', 'PGSC0003DMG400011066' => 'stu', 'PGSC0003DMG400012041' => 'stu', 'PGSC0003DMG400013678' => 'stu', 'PGSC0003DMG400023477' => 'stu', 'PGSC0003DMG400025956' => 'stu', 'PGSC0003DMG401019151' => 'stu', 'Phvul.006G116400' => 'pvu', 'Phvul.007G097300' => 'pvu', 'Phvul.010G015000' => 'pvu', 'Phvul.010G083900' => 'pvu', 'Potri.001G117100' => 'ptr', 'Potri.002G147300' => 'ptr', 'Potri.003G115600' => 'ptr', 'Potri.006G087400' => 'ptr', 'Potri.010G226100' => 'ptr', 'Potri.014G069200' => 'ptr', 'Potri.014G104000' => 'ptr', 'Potri.016G100200' => 'ptr', 'Pp3c10_20450' => 'ppa', 'Pp3c1_42400' => 'ppa', 'Pp3c3_24390' => 'ppa', 'Pp3c3_2860' => 'ppa', 'PRCOL_00003193' => 'pco', 'Prupe.2G144500' => 'ppe', 'Prupe.2G195700' => 'ppe', 'Prupe.2G209800' => 'ppe', 'Prupe.5G080000' => 'ppe', 'Prupe.6G257900' => 'ppe', 'Psat3g001160' => 'psa', 'Psat6g181880' => 'psa', 'Psat7g233720' => 'psa', 'PSO063G7587' => 'pso', 'PSO339G2145' => 'pso', 'PSO339G3369' => 'pso', 'PSO478G2747' => 'pso', 'PSO513G0140' => 'pso', 'PSO782G1614' => 'pso', 'PSO782G4889' => 'pso', 'PSO782G5485' => 'pso', 'PSO801G0241' => 'pso', 'QL07p048854' => 'qlo', 'QL08p046745' => 'qlo', 'QL08p052606' => 'qlo', 'QL08p053414' => 'qlo', 'QL08p054868' => 'qlo', 'RcHm_v2.0_Chr1g0350251' => 'rch', 'RcHm_v2.0_Chr1g0360851' => 'rch', 'RcHm_v2.0_Chr1g0362791' => 'rch', 'RcHm_v2.0_Chr3g0466281' => 'rch', 'RcHm_v2.0_Chr7g0201481' => 'rch', 'Rhsim01G0148600' => 'rsi', 'Rhsim05G0194400' => 'rsi', 'Rhsim07G0000700' => 'rsi', 'Rhsim07G0000800' => 'rsi', 'Rhsim07G0027900' => 'rsi', 'Rhsim09G0149500' => 'rsi', 'RhsimUnG0186900' => 'rsi', 'Sabra01G0089900' => 'sbr', 'Sabra02G0114700' => 'sbr', 'Sabra02G0116300' => 'sbr', 'Sabra03G0080100' => 'sbr', 'Sabra08G0024300' => 'sbr', 'Sabra10G0174300' => 'sbr', 'Sabra14G0048900' => 'sbr', 'Sabra14G0076500' => 'sbr', 'SalBow5G2513' => 'sbo', 'Sc01g0002300' => 'sci', 'Sc01g0004450' => 'sci', 'Sc06g0001680' => 'sci', 'Sc23g0003580' => 'sci', 'Sed0000913' => 'sed', 'Sed0001655' => 'sed', 'Sed0007745' => 'sed', 'Sed0010951' => 'sed', 'Sed0017599' => 'sed', 'Sed0021405' => 'sed', 'Sed0022810' => 'sed', 'SEGI_07099' => 'sgi', 'SEGI_11931' => 'sgi', 'SEGI_13187' => 'sgi', 'SEGI_29958' => 'sgi', 'SEGI_36351' => 'sgi', 'SGA_v2.0_scaffold126G33770' => 'sas', 'SGA_v2.0_scaffold153G37003' => 'sas', 'SGA_v2.0_scaffold2G01359' => 'sas', 'SGA_v2.0_scaffold5G03064' => 'sas', 'SGA_v2.0_scaffold95G28903' => 'sas', 'SHI12701' => 'shi', 'SHI26410' => 'shi', 'SHI38997' => 'shi', 'SHI53759' => 'shi', 'SHI53886' => 'shi', 'SHI54714' => 'shi', 'SMO011G0041' => 'smo', 'SMO146G0251' => 'smo', 'SMO160G0004' => 'smo', 'SMO174G0057' => 'smo', 'SMO244G0089' => 'smo', 'SMO296G0011' => 'smo', 'Solyc01g091280.3' => 'sly', 'Solyc05g047610.3' => 'sly', 'Solyc05g047640.3' => 'sly', 'Solyc05g055630.3' => 'sly', 'Solyc10g018160.2' => 'sly', 'Solyc10g084820.2' => 'sly', 'Solyc10g086565.2' => 'sly', 'Sopen01g037030' => 'spe', 'Sopen05g027920' => 'spe', 'Sopen05g034070' => 'spe', 'Sopen10g007260' => 'spe', 'Sopen10g034260' => 'spe', 'Sopen10g035950' => 'spe', 'Sp3g07710' => 'spa', 'Sp4g27420' => 'spa', 'Sp5g02450' => 'spa', 'Sp6g01280' => 'spa', 'Sp6g38480' => 'spa', 'Sp7g20780' => 'spa', 'TAR374G1413' => 'tar', 'TAR623G1777' => 'tar', 'TAR629G2370' => 'tar', 'TAR633G1759' => 'tar', 'TAR636G3387' => 'tar', 'THA.LOC104802447' => 'tha', 'THA.LOC104813916' => 'tha', 'THA.LOC104816423' => 'tha', 'THA.LOC104817246' => 'tha', 'THA.LOC104825895' => 'tha', 'Thecc.01G335200' => 'tca', 'Thecc.01G377400' => 'tca', 'Thecc.03G262200' => 'tca', 'Thecc.05G036800' => 'tca', 'Thecc.10G080500' => 'tca', 'Thecc.10G080800' => 'tca', 'Thhalv10001560m.g' => 'esa', 'Thhalv10006120m.g' => 'esa', 'Thhalv10014375m.g' => 'esa', 'Thhalv10021264m.g' => 'esa', 'Thhalv10028856m.g' => 'esa', 'TPR.G1914' => 'tpr', 'TPR.G4757' => 'tpr', 'TPR.G5595' => 'tpr', 'TWI14G0952' => 'twi', 'TWI14G1307' => 'twi', 'TWI38G2143' => 'twi', 'TWI59G0826' => 'twi', 'TWI77G0527' => 'twi', 'TWI81G0150' => 'twi', 'unitig_21.g21018' => 'ugi', 'unitig_26.g9725' => 'ugi', 'unitig_744.g24653' => 'ugi', 'unitig_749.g13778' => 'ugi', 'unitig_899.g15035' => 'ugi', 'vmacro04296' => 'vma', 'vmacro04852' => 'vma', 'vmacro13404' => 'vma', 'vmacro20169' => 'vma', 'vmacro21014' => 'vma', 'VMungo0331G0237' => 'vmu', 'VMungo0331G0706' => 'vmu', 'VMungo0331G1361' => 'vmu', 'VMungo0331G1489' => 'vmu', 'VMungo0540G1037' => 'vmu', 'VMungo0720G2487' => 'vmu', 'VMungo0720G2721' => 'vmu', 'Zm00001eb086860' => 'zma', 'Zm00001eb104760' => 'zma', 'Zm00001eb148220' => 'zma', 'Zm00001eb259030' => 'zma', 'Zm00001eb289590' => 'zma', 'Zm00001eb420150' => 'zma' ), 'gf_id' => 'HOM05D000968', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000968' ), 'data_identifier' => 'HOM05D000968', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000968', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p31690' => 'bna', 'A03p36040' => 'bna', 'A03p53730' => 'bna', 'A04p01410' => 'bna', 'A05p05420' => 'bna', 'A05p39630' => 'bna', 'A05p39640' => 'bna', 'A09p00970' => 'bna', 'A09p53060' => 'bna', 'A10p31890' => 'bna', 'Aa31LG10G15040' => 'aar', 'Aa31LG1G21090' => 'aar', 'Aa31LG1G26900' => 'aar', 'Aa31LG3G1820' => 'aar', 'Aa31LG5G1100' => 'aar', 'Aa31LG6G4740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2265' => 'aag', 'Actinidia07998' => 'ach', 'Actinidia11266' => 'ach', 'Actinidia12682' => 'ach', 'Actinidia26479' => 'ach', 'Actinidia31406' => 'ach', 'Actinidia32437' => 'ach', 'Actinidia38862' => 'ach', 'Ah.05g174230' => 'amhyb', 'Ah.05g179070' => 'amhyb', 'Ah.05g179090' => 'amhyb', 'Ah.12g059950' => 'amhyb', 'AL3G20480' => 'aly', 'AL4G44520' => 'aly', 'AL5G43110' => 'aly', 'AL6G13890' => 'aly', 'AL6G52620' => 'aly', 'AL7G30830' => 'aly', 'Aqoxy1G00899' => 'aox', 'Aqoxy5G04333' => 'aox', 'Aqoxy7G00641' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3IZ0NN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4EF6AW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W9P8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79GA3M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C43NQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFCU6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G95YVJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCHK29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LU1UG8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX91RN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGB4B1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8DA0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9H7JI' => 'arhy', 'AT3G09320' => 'ath', 'AT3G60800' => 'ath', 'AT4G00840' => 'ath', 'AT4G22750' => 'ath', 'AT5G04270' => 'ath', 'ATR0090G003' => 'atr', 'ATR0559G349' => 'atr', 'ATR0680G261' => 'atr', 'ATR0810G048' => 'atr', 'Atru.chr12.831' => 'acertr', 'Atru.chr5.303' => 'acertr', 'Atru.chr5.748' => 'acertr', 'Atru.chr8.1999' => 'acertr', 'Atru.chr9.1436' => 'acertr', 'AUR62004211' => 'cqu', 'AUR62004548' => 'cqu', 'AUR62013637' => 'cqu', 'AUR62022662' => 'cqu', 'AUR62025777' => 'cqu', 'AUR62042386' => 'cqu', 'BcaB01g02310' => 'bca', 'BcaB01g06062' => 'bca', 'BcaB02g08975' => 'bca', 'BcaB02g08980' => 'bca', 'BcaC01g04228' => 'bca', 'BcaC01g06830' => 'bca', 'BcaC02g10186' => 'bca', 'BcaC02g12214' => 'bca', 'BcaC04g24101' => 'bca', 'BcaC05g29520' => 'bca', 'BcaC05g29661' => 'bca', 'BcaC06g32130' => 'bca', 'BcaC06g32131' => 'bca', 'BcaC07g40601' => 'bca', 'BcaC07g42641' => 'bca', 'BcaNung01038' => 'bca', 'BcaNung01676' => 'bca', 'BcaNung02480' => 'bca', 'BcaNung07376' => 'bca', 'BolC3t16146H' => 'bol', 'BolC3t16637H' => 'bol', 'BolC4t22257H' => 'bol', 'BolC4t24728H' => 'bol', 'BolC5t34517H' => 'bol', 'BolC7t45703H' => 'bol', 'BolC8t51166H' => 'bol', 'BolC9t53038H' => 'bol', 'BolC9t60000H' => 'bol', 'BraA01t01345Z' => 'bra', 'BraA01t01346Z' => 'bra', 'BraA01t01348Z' => 'bra', 'BraA03t12347Z' => 'bra', 'BraA03t12775Z' => 'bra', 'BraA03t14439Z' => 'bra', 'BraA04t15860Z' => 'bra', 'BraA05t19511Z' => 'bra', 'BraA05t22746Z' => 'bra', 'BraA09t35767Z' => 'bra', 'BraA09t40732Z' => 'bra', 'BraA10t45233Z' => 'bra', 'C03p38720' => 'bna', 'C03p43680' => 'bna', 'C04p06350' => 'bna', 'C04p31800' => 'bna', 'C05p58680' => 'bna', 'C07p52110' => 'bna', 'C08p35760' => 'bna', 'C09p01050' => 'bna', 'C09p72600' => 'bna', 'CAN.G106.2' => 'can', 'CAN.G1482.1' => 'can', 'CAN.G324.12' => 'can', 'CAN.G388.20' => 'can', 'CAN.G412.7' => 'can', 'CAN.G694.32' => 'can', 'CAN.G92.12' => 'can', 'CANSAT11G2353' => 'cansat', 'CANSAT21G1398' => 'cansat', 'CANSAT56G2456' => 'cansat', 'CANSAT56G3031' => 'cansat', 'CANSAT56G4539' => 'cansat', 'CARHR083680' => 'chi', 'CARHR171190' => 'chi', 'CARHR209010' => 'chi', 'CARHR229680' => 'chi', 'CARHR249490' => 'chi', 'Carub.0003s0844' => 'cru', 'Carub.0005s2755' => 'cru', 'Carub.0006s0322' => 'cru', 'Carub.0006s3586' => 'cru', 'Carub.0007s1855' => 'cru', 'Ca_07808_v3' => 'car', 'Ca_09535_v3' => 'car', 'Ca_10548_v3' => 'car', 'Ca_19913_v3' => 'car', 'Ca_19916_v3' => 'car', 'Ca_19975_v3' => 'car', 'CBR_g22876' => 'cbr', 'CBR_g22879' => 'cbr', 'CBR_g38491' => 'cbr', 'CBR_g54185' => 'cbr', 'CBR_g54190' => 'cbr', 'Cc02_g11020' => 'ccan', 'Cc02_g23920' => 'ccan', 'Cc02_g39860' => 'ccan', 'Cc02_g39870' => 'ccan', 'Cc03_g06760' => 'ccan', 'Cc06_g02450' => 'ccan', 'Cc09_g09450' => 'ccan', 'CDE02G1959' => 'cde', 'CDE04G0600' => 'cde', 'CDE07G1996' => 'cde', 'CDE07G2078' => 'cde', 'CDE11G0611' => 'cde', 'Cfa001683' => 'cfa', 'Cfa001734' => 'cfa', 'Cfa001737' => 'cfa', 'Cfa003751' => 'cfa', 'Cfa012019' => 'cfa', 'Cfa017353' => 'cfa', 'Cfa017732' => 'cfa', 'Cfa022464' => 'cfa', 'Ciclev10012400m.g' => 'ccl', 'Ciclev10021242m.g' => 'ccl', 'Ciclev10021302m.g' => 'ccl', 'Ciclev10021463m.g' => 'ccl', 'Ciclev10032359m.g' => 'ccl', 'CiPaw.01G081000' => 'cil', 'CiPaw.01G262500' => 'cil', 'CiPaw.01G269800' => 'cil', 'CiPaw.02G168400' => 'cil', 'CiPaw.05G119500' => 'cil', 'CiPaw.11G147300' => 'cil', 'ClCG01G003630' => 'cla', 'ClCG05G000510' => 'cla', 'ClCG05G002300' => 'cla', 'ClCG08G007650' => 'cla', 'ClCG10G021250' => 'cla', 'COL.COLO4_06218' => 'col', 'COL.COLO4_12538' => 'col', 'COL.COLO4_14775' => 'col', 'COL.COLO4_23875' => 'col', 'Cpa.g.sc141.16' => 'cpa', 'Cpa.g.sc169.16' => 'cpa', 'Cpa.g.sc244.4' => 'cpa', 'Cpa.g.sc244.5' => 'cpa', 'Cpa.g.sc29.87' => 'cpa', 'Cpa.g.sc53.115' => 'cpa', 'Cre03.g207502' => 'cre', 'Cre06.g277000' => 'cre', 'Cre09.g394050' => 'cre', 'CsaV3_3G007680' => 'csa', 'CsaV3_3G009710' => 'csa', 'CsaV3_3G034790' => 'csa', 'CsaV3_5G003750' => 'csa', 'CsaV3_6G036620' => 'csa', 'CSS0002288' => 'camsi', 'CSS0011250' => 'camsi', 'CSS0021619' => 'camsi', 'CSS0046701' => 'camsi', 'DCAR_006420' => 'dca', 'DCAR_006865' => 'dca', 'DCAR_008558' => 'dca', 'DCAR_028754' => 'dca', 'DCAR_028755' => 'dca', 'Dinv31218' => 'din', 'Dinv32371' => 'din', 'Dinv34250' => 'din', 'Dinv37156' => 'din', 'Dinv43704' => 'din', 'Duzib093G1811' => 'dzi', 'Duzib106G1622' => 'dzi', 'Duzib114G0504' => 'dzi', 'Duzib128G0338' => 'dzi', 'Duzib128G1577' => 'dzi', 'Duzib133G0104' => 'dzi', 'Duzib133G1080' => 'dzi', 'Duzib138G0324' => 'dzi', 'Duzib138G0394' => 'dzi', 'Duzib205G0122' => 'dzi', 'Duzib268G1020' => 'dzi', 'Duzib268G1359' => 'dzi', 'ECA232G3929' => 'eca', 'ECA236G2210' => 'eca', 'ECA236G2287' => 'eca', 'ECA240G4568' => 'eca', 'ECA247G0894' => 'eca', 'EL10Ac1g00200' => 'bvu', 'EL10Ac1g00886' => 'bvu', 'EL10As1g23091' => 'bvu', 'EL10As1g23092' => 'bvu', 'Eucgr.A01284' => 'egr', 'Eucgr.A01285' => 'egr', 'Eucgr.D02456' => 'egr', 'Eucgr.E00018' => 'egr', 'Eucgr.E01439' => 'egr', 'Eucgr.G02859' => 'egr', 'FAN01G0168' => 'fan', 'FAN01G0453' => 'fan', 'FAN01G2761' => 'fan', 'FAN02G1239' => 'fan', 'FAN03G0645' => 'fan', 'FAN03G2707' => 'fan', 'FAN03G2978' => 'fan', 'FAN04G0227' => 'fan', 'FAN06G0091' => 'fan', 'FAN06G1418' => 'fan', 'FAN06G1512' => 'fan', 'FAN06G1986' => 'fan', 'FAN06G2905' => 'fan', 'FAN06G4325' => 'fan', 'FAN08G0033' => 'fan', 'FAN09G0642' => 'fan', 'FAN10G1763' => 'fan', 'FAN10G2026' => 'fan', 'FAN10G2513' => 'fan', 'FAN10G3402' => 'fan', 'FAN10G3564' => 'fan', 'FAN10G3987' => 'fan', 'FAN13G1490' => 'fan', 'FAN14G5857' => 'fan', 'FAN18G1188' => 'fan', 'FvH4_5g00750' => 'fve', 'FvH4_6g13410' => 'fve', 'FvH4_7g11740' => 'fve', 'FvH4_7g17410' => 'fve', 'FvH4_7g18860' => 'fve', 'Glyma.01G099100' => 'gma', 'Glyma.01G142300' => 'gma', 'Glyma.03G025500' => 'gma', 'Glyma.03G069700' => 'gma', 'Glyma.03G260000' => 'gma', 'Glyma.09G269800' => 'gma', 'Glyma.10G208700' => 'gma', 'Glyma.18G220400' => 'gma', 'Glyma.20G182000' => 'gma', 'Gohir.A01G221726' => 'ghi', 'Gohir.A07G134600' => 'ghi', 'Gohir.A07G146000' => 'ghi', 'Gohir.A08G173900' => 'ghi', 'Gohir.A09G194900' => 'ghi', 'Gohir.A10G204100' => 'ghi', 'Gohir.A11G080600' => 'ghi', 'Gohir.A11G327500' => 'ghi', 'Gohir.A12G101800' => 'ghi', 'Gohir.D01G211200' => 'ghi', 'Gohir.D07G139200' => 'ghi', 'Gohir.D07G152100' => 'ghi', 'Gohir.D08G192600' => 'ghi', 'Gohir.D09G189200' => 'ghi', 'Gohir.D10G212000' => 'ghi', 'Gohir.D11G085200' => 'ghi', 'Gohir.D11G346400' => 'ghi', 'Gohir.D12G104800' => 'ghi', 'Gorai.001G151300' => 'gra', 'Gorai.001G174100' => 'gra', 'Gorai.002G257000' => 'gra', 'Gorai.004G202600' => 'gra', 'Gorai.007G090900' => 'gra', 'Gorai.007G376700' => 'gra', 'Gorai.008G114100' => 'gra', 'Gorai.011G237900' => 'gra', 'GSVIVG01005450001' => 'vvi', 'GSVIVG01016232001' => 'vvi', 'GSVIVG01026157001' => 'vvi', 'GSVIVG01027419001' => 'vvi', 'GSVIVG01027631001' => 'vvi', 'GSVIVG01034143001' => 'vvi', 'HanXRQChr03g0093921' => 'han', 'HanXRQChr04g0120001' => 'han', 'HanXRQChr04g0122561' => 'han', 'HanXRQChr09g0246851' => 'han', 'HanXRQChr10g0293311' => 'han', 'HanXRQChr13g0425231' => 'han', 'HanXRQChr16g0532571' => 'han', 'Haze_09050' => 'cav', 'Haze_15715' => 'cav', 'Haze_15716' => 'cav', 'Haze_16803' => 'cav', 'Haze_16850' => 'cav', 'Hma1.2p1_0301F.1_g118655' => 'hma', 'Hma1.2p1_0309F.1_g120590' => 'hma', 'Hma1.2p1_0936F.1_g238900' => 'hma', 'Hma1.2p1_3552F.1_g336740' => 'hma', 'HPP92_003520' => 'vpl', 'HPP92_006628' => 'vpl', 'HPP92_006645' => 'vpl', 'HPP92_014669' => 'vpl', 'HPP92_015077' => 'vpl', 'Hund16742' => 'sun', 'Hund17022' => 'sun', 'Lalb_Chr02g0152131' => 'lal', 'Lalb_Chr05g0225371' => 'lal', 'Lalb_Chr07g0189841' => 'lal', 'Lalb_Chr07g0192961' => 'lal', 'Lalb_Chr12g0208221' => 'lal', 'Lalb_Chr13g0291211' => 'lal', 'Lalb_Chr13g0291781' => 'lal', 'Lalb_Chr18g0044651' => 'lal', 'Lalb_Chr21g0313731' => 'lal', 'Lj1g0022533' => 'lja', 'Lj2A18T50' => 'lonja', 'Lj2A92G93' => 'lonja', 'Lj3A965T73' => 'lonja', 'Lj3g0000673' => 'lja', 'Lj3g0002666' => 'lja', 'Lj4g0016985' => 'lja', 'Lj5g0003625' => 'lja', 'Lj7A529G36' => 'lonja', 'Lj9A569T49' => 'lonja', 'Lj9A604T63' => 'lonja', 'Lsat_1_v5_gn_3_132060' => 'lsa', 'Lsat_1_v5_gn_4_68941' => 'lsa', 'Lsat_1_v5_gn_5_95580' => 'lsa', 'Lsat_1_v5_gn_7_161' => 'lsa', 'Lsat_1_v5_gn_7_7041' => 'lsa', 'Lsat_1_v5_gn_9_33481' => 'lsa', 'Lsat_1_v5_gn_9_68260' => 'lsa', 'Manes.01G073100' => 'mes', 'Manes.01G266300' => 'mes', 'Manes.02G033300' => 'mes', 'Manes.05G017900' => 'mes', 'Manes.05G046100' => 'mes', 'Manes.08G080900' => 'mes', 'Manes.10G049400' => 'mes', 'Mapoly0009s0186' => 'mpo', 'Mapoly0036s0118' => 'mpo', 'Mapoly0101s0046' => 'mpo', 'MBI04_g30218_MAGBIO' => 'mbi', 'MBI04_g35564_MAGBIO' => 'mbi', 'MBI12_g34011_MAGBIO' => 'mbi', 'MBI14_g04655_MAGBIO' => 'mbi', 'MCO07G653' => 'mco', 'MCO10G173' => 'mco', 'MD01G1087100' => 'mdo', 'MD01G1104200' => 'mdo', 'MD02G1205100' => 'mdo', 'MD04G1079200' => 'mdo', 'MD04G1131400' => 'mdo', 'MD07G1121600' => 'mdo', 'MD07G1157300' => 'mdo', 'MD07G1171000' => 'mdo', 'MD12G1144500' => 'mdo', 'Medtr1g094610' => 'mtr', 'Medtr4g021795' => 'mtr', 'Medtr4g023760' => 'mtr', 'Medtr7g118050' => 'mtr', 'MELO3C005582.2' => 'cme', 'MELO3C005989.2' => 'cme', 'MELO3C006192.2' => 'cme', 'MELO3C009248.2' => 'cme', 'MELO3C019817.2' => 'cme', 'Migut.B01625' => 'egut', 'Migut.B01915' => 'egut', 'Migut.F01721' => 'egut', 'Migut.J00314' => 'egut', 'MSTRG.20742' => 'ama', 'MSTRG.8134' => 'ama', 'Nitab4.5_0000096g0010' => 'nta', 'Nitab4.5_0000202g0030' => 'nta', 'Nitab4.5_0000216g0370' => 'nta', 'Nitab4.5_0000457g0230' => 'nta', 'Nitab4.5_0001702g0170' => 'nta', 'Nitab4.5_0003607g0010' => 'nta', 'Nitab4.5_0004917g0020' => 'nta', 'Nitab4.5_0007059g0010' => 'nta', 'Nitab4.5_0007184g0010' => 'nta', 'Nitab4.5_0007346g0020' => 'nta', 'Nn1g00410' => 'nnu', 'Nn1g01252' => 'nnu', 'Nn2g11168' => 'nnu', 'Nn2g13403' => 'nnu', 'Nn2g13760' => 'nnu', 'Nn4g26380' => 'nnu', 'Oeu000806.2' => 'oeu', 'Oeu005788.1' => 'oeu', 'Oeu006900.3' => 'oeu', 'Oeu007797.1' => 'oeu', 'Oeu011932.1' => 'oeu', 'Oeu022739.1' => 'oeu', 'Oeu037918.1' => 'oeu', 'Oeu055490.2' => 'oeu', 'Os01g0844400' => 'osa', 'Os02g0819100' => 'osa', 'Os03g0804300' => 'osa', 'Os05g0458000' => 'osa', 'Os07g0467800' => 'osa', 'Os12g0602200' => 'osa', 'Peaxi162Scf00013g03444' => 'pax', 'Peaxi162Scf00094g01120' => 'pax', 'Peaxi162Scf00191g01211' => 'pax', 'Peaxi162Scf00238g01110' => 'pax', 'Peaxi162Scf00330g00719' => 'pax', 'Peaxi162Scf00627g00018' => 'pax', 'PGR031G2686' => 'pgr', 'PGR042G0809' => 'pgr', 'PGR142G0193' => 'pgr', 'PGSC0003DMG400011066' => 'stu', 'PGSC0003DMG400012041' => 'stu', 'PGSC0003DMG400013678' => 'stu', 'PGSC0003DMG400023477' => 'stu', 'PGSC0003DMG400025956' => 'stu', 'PGSC0003DMG401019151' => 'stu', 'Phvul.006G116400' => 'pvu', 'Phvul.007G097300' => 'pvu', 'Phvul.010G015000' => 'pvu', 'Phvul.010G083900' => 'pvu', 'Potri.001G117100' => 'ptr', 'Potri.002G147300' => 'ptr', 'Potri.003G115600' => 'ptr', 'Potri.006G087400' => 'ptr', 'Potri.010G226100' => 'ptr', 'Potri.014G069200' => 'ptr', 'Potri.014G104000' => 'ptr', 'Potri.016G100200' => 'ptr', 'Pp3c10_20450' => 'ppa', 'Pp3c1_42400' => 'ppa', 'Pp3c3_24390' => 'ppa', 'Pp3c3_2860' => 'ppa', 'PRCOL_00003193' => 'pco', 'Prupe.2G144500' => 'ppe', 'Prupe.2G195700' => 'ppe', 'Prupe.2G209800' => 'ppe', 'Prupe.5G080000' => 'ppe', 'Prupe.6G257900' => 'ppe', 'Psat3g001160' => 'psa', 'Psat6g181880' => 'psa', 'Psat7g233720' => 'psa', 'PSO063G7587' => 'pso', 'PSO339G2145' => 'pso', 'PSO339G3369' => 'pso', 'PSO478G2747' => 'pso', 'PSO513G0140' => 'pso', 'PSO782G1614' => 'pso', 'PSO782G4889' => 'pso', 'PSO782G5485' => 'pso', 'PSO801G0241' => 'pso', 'QL07p048854' => 'qlo', 'QL08p046745' => 'qlo', 'QL08p052606' => 'qlo', 'QL08p053414' => 'qlo', 'QL08p054868' => 'qlo', 'RcHm_v2.0_Chr1g0350251' => 'rch', 'RcHm_v2.0_Chr1g0360851' => 'rch', 'RcHm_v2.0_Chr1g0362791' => 'rch', 'RcHm_v2.0_Chr3g0466281' => 'rch', 'RcHm_v2.0_Chr7g0201481' => 'rch', 'Rhsim01G0148600' => 'rsi', 'Rhsim05G0194400' => 'rsi', 'Rhsim07G0000700' => 'rsi', 'Rhsim07G0000800' => 'rsi', 'Rhsim07G0027900' => 'rsi', 'Rhsim09G0149500' => 'rsi', 'RhsimUnG0186900' => 'rsi', 'Sabra01G0089900' => 'sbr', 'Sabra02G0114700' => 'sbr', 'Sabra02G0116300' => 'sbr', 'Sabra03G0080100' => 'sbr', 'Sabra08G0024300' => 'sbr', 'Sabra10G0174300' => 'sbr', 'Sabra14G0048900' => 'sbr', 'Sabra14G0076500' => 'sbr', 'SalBow5G2513' => 'sbo', 'Sc01g0002300' => 'sci', 'Sc01g0004450' => 'sci', 'Sc06g0001680' => 'sci', 'Sc23g0003580' => 'sci', 'Sed0000913' => 'sed', 'Sed0001655' => 'sed', 'Sed0007745' => 'sed', 'Sed0010951' => 'sed', 'Sed0017599' => 'sed', 'Sed0021405' => 'sed', 'Sed0022810' => 'sed', 'SEGI_07099' => 'sgi', 'SEGI_11931' => 'sgi', 'SEGI_13187' => 'sgi', 'SEGI_29958' => 'sgi', 'SEGI_36351' => 'sgi', 'SGA_v2.0_scaffold126G33770' => 'sas', 'SGA_v2.0_scaffold153G37003' => 'sas', 'SGA_v2.0_scaffold2G01359' => 'sas', 'SGA_v2.0_scaffold5G03064' => 'sas', 'SGA_v2.0_scaffold95G28903' => 'sas', 'SHI12701' => 'shi', 'SHI26410' => 'shi', 'SHI38997' => 'shi', 'SHI53759' => 'shi', 'SHI53886' => 'shi', 'SHI54714' => 'shi', 'SMO011G0041' => 'smo', 'SMO146G0251' => 'smo', 'SMO160G0004' => 'smo', 'SMO174G0057' => 'smo', 'SMO244G0089' => 'smo', 'SMO296G0011' => 'smo', 'Solyc01g091280.3' => 'sly', 'Solyc05g047610.3' => 'sly', 'Solyc05g047640.3' => 'sly', 'Solyc05g055630.3' => 'sly', 'Solyc10g018160.2' => 'sly', 'Solyc10g084820.2' => 'sly', 'Solyc10g086565.2' => 'sly', 'Sopen01g037030' => 'spe', 'Sopen05g027920' => 'spe', 'Sopen05g034070' => 'spe', 'Sopen10g007260' => 'spe', 'Sopen10g034260' => 'spe', 'Sopen10g035950' => 'spe', 'Sp3g07710' => 'spa', 'Sp4g27420' => 'spa', 'Sp5g02450' => 'spa', 'Sp6g01280' => 'spa', 'Sp6g38480' => 'spa', 'Sp7g20780' => 'spa', 'TAR374G1413' => 'tar', 'TAR623G1777' => 'tar', 'TAR629G2370' => 'tar', 'TAR633G1759' => 'tar', 'TAR636G3387' => 'tar', 'THA.LOC104802447' => 'tha', 'THA.LOC104813916' => 'tha', 'THA.LOC104816423' => 'tha', 'THA.LOC104817246' => 'tha', 'THA.LOC104825895' => 'tha', 'Thecc.01G335200' => 'tca', 'Thecc.01G377400' => 'tca', 'Thecc.03G262200' => 'tca', 'Thecc.05G036800' => 'tca', 'Thecc.10G080500' => 'tca', 'Thecc.10G080800' => 'tca', 'Thhalv10001560m.g' => 'esa', 'Thhalv10006120m.g' => 'esa', 'Thhalv10014375m.g' => 'esa', 'Thhalv10021264m.g' => 'esa', 'Thhalv10028856m.g' => 'esa', 'TPR.G1914' => 'tpr', 'TPR.G4757' => 'tpr', 'TPR.G5595' => 'tpr', 'TWI14G0952' => 'twi', 'TWI14G1307' => 'twi', 'TWI38G2143' => 'twi', 'TWI59G0826' => 'twi', 'TWI77G0527' => 'twi', 'TWI81G0150' => 'twi', 'unitig_21.g21018' => 'ugi', 'unitig_26.g9725' => 'ugi', 'unitig_744.g24653' => 'ugi', 'unitig_749.g13778' => 'ugi', 'unitig_899.g15035' => 'ugi', 'vmacro04296' => 'vma', 'vmacro04852' => 'vma', 'vmacro13404' => 'vma', 'vmacro20169' => 'vma', 'vmacro21014' => 'vma', 'VMungo0331G0237' => 'vmu', 'VMungo0331G0706' => 'vmu', 'VMungo0331G1361' => 'vmu', 'VMungo0331G1489' => 'vmu', 'VMungo0540G1037' => 'vmu', 'VMungo0720G2487' => 'vmu', 'VMungo0720G2721' => 'vmu', 'Zm00001eb086860' => 'zma', 'Zm00001eb104760' => 'zma', 'Zm00001eb148220' => 'zma', 'Zm00001eb259030' => 'zma', 'Zm00001eb289590' => 'zma', 'Zm00001eb420150' => 'zma' ) $gf_id = 'HOM05D000968' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000968' ) $data_identifier = 'HOM05D000968' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 19, 'bol' => (int) 9, 'bra' => (int) 12, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 5, 'ccan' => (int) 7, 'cde' => (int) 5, 'cfa' => (int) 8, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 4, 'dca' => (int) 5, 'din' => (int) 5, 'dzi' => (int) 12, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 25, 'fve' => (int) 5, 'gma' => (int) 9, 'ghi' => (int) 18, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 7, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 5, 'sun' => (int) 2, 'lal' => (int) 9, 'lja' => (int) 5, 'lonja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 9, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 2, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 3, 'stu' => (int) 6, 'pvu' => (int) 4, 'ptr' => (int) 8, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 3, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 1, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 5, 'sas' => (int) 5, 'shi' => (int) 6, 'smo' => (int) 6, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 3, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420150' $species_info = array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ) $local_species = 'atr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000968', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p31690' => 'bna', 'A03p36040' => 'bna', 'A03p53730' => 'bna', 'A04p01410' => 'bna', 'A05p05420' => 'bna', 'A05p39630' => 'bna', 'A05p39640' => 'bna', 'A09p00970' => 'bna', 'A09p53060' => 'bna', 'A10p31890' => 'bna', 'Aa31LG10G15040' => 'aar', 'Aa31LG1G21090' => 'aar', 'Aa31LG1G26900' => 'aar', 'Aa31LG3G1820' => 'aar', 'Aa31LG5G1100' => 'aar', 'Aa31LG6G4740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2265' => 'aag', 'Actinidia07998' => 'ach', 'Actinidia11266' => 'ach', 'Actinidia12682' => 'ach', 'Actinidia26479' => 'ach', 'Actinidia31406' => 'ach', 'Actinidia32437' => 'ach', 'Actinidia38862' => 'ach', 'Ah.05g174230' => 'amhyb', 'Ah.05g179070' => 'amhyb', 'Ah.05g179090' => 'amhyb', 'Ah.12g059950' => 'amhyb', 'AL3G20480' => 'aly', 'AL4G44520' => 'aly', 'AL5G43110' => 'aly', 'AL6G13890' => 'aly', 'AL6G52620' => 'aly', 'AL7G30830' => 'aly', 'Aqoxy1G00899' => 'aox', 'Aqoxy5G04333' => 'aox', 'Aqoxy7G00641' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3IZ0NN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4EF6AW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W9P8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79GA3M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C43NQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFCU6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G95YVJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCHK29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LU1UG8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX91RN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGB4B1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8DA0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9H7JI' => 'arhy', 'AT3G09320' => 'ath', 'AT3G60800' => 'ath', 'AT4G00840' => 'ath', 'AT4G22750' => 'ath', 'AT5G04270' => 'ath', 'ATR0090G003' => 'atr', 'ATR0559G349' => 'atr', 'ATR0680G261' => 'atr', 'ATR0810G048' => 'atr', 'Atru.chr12.831' => 'acertr', 'Atru.chr5.303' => 'acertr', 'Atru.chr5.748' => 'acertr', 'Atru.chr8.1999' => 'acertr', 'Atru.chr9.1436' => 'acertr', 'AUR62004211' => 'cqu', 'AUR62004548' => 'cqu', 'AUR62013637' => 'cqu', 'AUR62022662' => 'cqu', 'AUR62025777' => 'cqu', 'AUR62042386' => 'cqu', 'BcaB01g02310' => 'bca', 'BcaB01g06062' => 'bca', 'BcaB02g08975' => 'bca', 'BcaB02g08980' => 'bca', 'BcaC01g04228' => 'bca', 'BcaC01g06830' => 'bca', 'BcaC02g10186' => 'bca', 'BcaC02g12214' => 'bca', 'BcaC04g24101' => 'bca', 'BcaC05g29520' => 'bca', 'BcaC05g29661' => 'bca', 'BcaC06g32130' => 'bca', 'BcaC06g32131' => 'bca', 'BcaC07g40601' => 'bca', 'BcaC07g42641' => 'bca', 'BcaNung01038' => 'bca', 'BcaNung01676' => 'bca', 'BcaNung02480' => 'bca', 'BcaNung07376' => 'bca', 'BolC3t16146H' => 'bol', 'BolC3t16637H' => 'bol', 'BolC4t22257H' => 'bol', 'BolC4t24728H' => 'bol', 'BolC5t34517H' => 'bol', 'BolC7t45703H' => 'bol', 'BolC8t51166H' => 'bol', 'BolC9t53038H' => 'bol', 'BolC9t60000H' => 'bol', 'BraA01t01345Z' => 'bra', 'BraA01t01346Z' => 'bra', 'BraA01t01348Z' => 'bra', 'BraA03t12347Z' => 'bra', 'BraA03t12775Z' => 'bra', 'BraA03t14439Z' => 'bra', 'BraA04t15860Z' => 'bra', 'BraA05t19511Z' => 'bra', 'BraA05t22746Z' => 'bra', 'BraA09t35767Z' => 'bra', 'BraA09t40732Z' => 'bra', 'BraA10t45233Z' => 'bra', 'C03p38720' => 'bna', 'C03p43680' => 'bna', 'C04p06350' => 'bna', 'C04p31800' => 'bna', 'C05p58680' => 'bna', 'C07p52110' => 'bna', 'C08p35760' => 'bna', 'C09p01050' => 'bna', 'C09p72600' => 'bna', 'CAN.G106.2' => 'can', 'CAN.G1482.1' => 'can', 'CAN.G324.12' => 'can', 'CAN.G388.20' => 'can', 'CAN.G412.7' => 'can', 'CAN.G694.32' => 'can', 'CAN.G92.12' => 'can', 'CANSAT11G2353' => 'cansat', 'CANSAT21G1398' => 'cansat', 'CANSAT56G2456' => 'cansat', 'CANSAT56G3031' => 'cansat', 'CANSAT56G4539' => 'cansat', 'CARHR083680' => 'chi', 'CARHR171190' => 'chi', 'CARHR209010' => 'chi', 'CARHR229680' => 'chi', 'CARHR249490' => 'chi', 'Carub.0003s0844' => 'cru', 'Carub.0005s2755' => 'cru', 'Carub.0006s0322' => 'cru', 'Carub.0006s3586' => 'cru', 'Carub.0007s1855' => 'cru', 'Ca_07808_v3' => 'car', 'Ca_09535_v3' => 'car', 'Ca_10548_v3' => 'car', 'Ca_19913_v3' => 'car', 'Ca_19916_v3' => 'car', 'Ca_19975_v3' => 'car', 'CBR_g22876' => 'cbr', 'CBR_g22879' => 'cbr', 'CBR_g38491' => 'cbr', 'CBR_g54185' => 'cbr', 'CBR_g54190' => 'cbr', 'Cc02_g11020' => 'ccan', 'Cc02_g23920' => 'ccan', 'Cc02_g39860' => 'ccan', 'Cc02_g39870' => 'ccan', 'Cc03_g06760' => 'ccan', 'Cc06_g02450' => 'ccan', 'Cc09_g09450' => 'ccan', 'CDE02G1959' => 'cde', 'CDE04G0600' => 'cde', 'CDE07G1996' => 'cde', 'CDE07G2078' => 'cde', 'CDE11G0611' => 'cde', 'Cfa001683' => 'cfa', 'Cfa001734' => 'cfa', 'Cfa001737' => 'cfa', 'Cfa003751' => 'cfa', 'Cfa012019' => 'cfa', 'Cfa017353' => 'cfa', 'Cfa017732' => 'cfa', 'Cfa022464' => 'cfa', 'Ciclev10012400m.g' => 'ccl', 'Ciclev10021242m.g' => 'ccl', 'Ciclev10021302m.g' => 'ccl', 'Ciclev10021463m.g' => 'ccl', 'Ciclev10032359m.g' => 'ccl', 'CiPaw.01G081000' => 'cil', 'CiPaw.01G262500' => 'cil', 'CiPaw.01G269800' => 'cil', 'CiPaw.02G168400' => 'cil', 'CiPaw.05G119500' => 'cil', 'CiPaw.11G147300' => 'cil', 'ClCG01G003630' => 'cla', 'ClCG05G000510' => 'cla', 'ClCG05G002300' => 'cla', 'ClCG08G007650' => 'cla', 'ClCG10G021250' => 'cla', 'COL.COLO4_06218' => 'col', 'COL.COLO4_12538' => 'col', 'COL.COLO4_14775' => 'col', 'COL.COLO4_23875' => 'col', 'Cpa.g.sc141.16' => 'cpa', 'Cpa.g.sc169.16' => 'cpa', 'Cpa.g.sc244.4' => 'cpa', 'Cpa.g.sc244.5' => 'cpa', 'Cpa.g.sc29.87' => 'cpa', 'Cpa.g.sc53.115' => 'cpa', 'Cre03.g207502' => 'cre', 'Cre06.g277000' => 'cre', 'Cre09.g394050' => 'cre', 'CsaV3_3G007680' => 'csa', 'CsaV3_3G009710' => 'csa', 'CsaV3_3G034790' => 'csa', 'CsaV3_5G003750' => 'csa', 'CsaV3_6G036620' => 'csa', 'CSS0002288' => 'camsi', 'CSS0011250' => 'camsi', 'CSS0021619' => 'camsi', 'CSS0046701' => 'camsi', 'DCAR_006420' => 'dca', 'DCAR_006865' => 'dca', 'DCAR_008558' => 'dca', 'DCAR_028754' => 'dca', 'DCAR_028755' => 'dca', 'Dinv31218' => 'din', 'Dinv32371' => 'din', 'Dinv34250' => 'din', 'Dinv37156' => 'din', 'Dinv43704' => 'din', 'Duzib093G1811' => 'dzi', 'Duzib106G1622' => 'dzi', 'Duzib114G0504' => 'dzi', 'Duzib128G0338' => 'dzi', 'Duzib128G1577' => 'dzi', 'Duzib133G0104' => 'dzi', 'Duzib133G1080' => 'dzi', 'Duzib138G0324' => 'dzi', 'Duzib138G0394' => 'dzi', 'Duzib205G0122' => 'dzi', 'Duzib268G1020' => 'dzi', 'Duzib268G1359' => 'dzi', 'ECA232G3929' => 'eca', 'ECA236G2210' => 'eca', 'ECA236G2287' => 'eca', 'ECA240G4568' => 'eca', 'ECA247G0894' => 'eca', 'EL10Ac1g00200' => 'bvu', 'EL10Ac1g00886' => 'bvu', 'EL10As1g23091' => 'bvu', 'EL10As1g23092' => 'bvu', 'Eucgr.A01284' => 'egr', 'Eucgr.A01285' => 'egr', 'Eucgr.D02456' => 'egr', 'Eucgr.E00018' => 'egr', 'Eucgr.E01439' => 'egr', 'Eucgr.G02859' => 'egr', 'FAN01G0168' => 'fan', 'FAN01G0453' => 'fan', 'FAN01G2761' => 'fan', 'FAN02G1239' => 'fan', 'FAN03G0645' => 'fan', 'FAN03G2707' => 'fan', 'FAN03G2978' => 'fan', 'FAN04G0227' => 'fan', 'FAN06G0091' => 'fan', 'FAN06G1418' => 'fan', 'FAN06G1512' => 'fan', 'FAN06G1986' => 'fan', 'FAN06G2905' => 'fan', 'FAN06G4325' => 'fan', 'FAN08G0033' => 'fan', 'FAN09G0642' => 'fan', 'FAN10G1763' => 'fan', 'FAN10G2026' => 'fan', 'FAN10G2513' => 'fan', 'FAN10G3402' => 'fan', 'FAN10G3564' => 'fan', 'FAN10G3987' => 'fan', 'FAN13G1490' => 'fan', 'FAN14G5857' => 'fan', 'FAN18G1188' => 'fan', 'FvH4_5g00750' => 'fve', 'FvH4_6g13410' => 'fve', 'FvH4_7g11740' => 'fve', 'FvH4_7g17410' => 'fve', 'FvH4_7g18860' => 'fve', 'Glyma.01G099100' => 'gma', 'Glyma.01G142300' => 'gma', 'Glyma.03G025500' => 'gma', 'Glyma.03G069700' => 'gma', 'Glyma.03G260000' => 'gma', 'Glyma.09G269800' => 'gma', 'Glyma.10G208700' => 'gma', 'Glyma.18G220400' => 'gma', 'Glyma.20G182000' => 'gma', 'Gohir.A01G221726' => 'ghi', 'Gohir.A07G134600' => 'ghi', 'Gohir.A07G146000' => 'ghi', 'Gohir.A08G173900' => 'ghi', 'Gohir.A09G194900' => 'ghi', 'Gohir.A10G204100' => 'ghi', 'Gohir.A11G080600' => 'ghi', 'Gohir.A11G327500' => 'ghi', 'Gohir.A12G101800' => 'ghi', 'Gohir.D01G211200' => 'ghi', 'Gohir.D07G139200' => 'ghi', 'Gohir.D07G152100' => 'ghi', 'Gohir.D08G192600' => 'ghi', 'Gohir.D09G189200' => 'ghi', 'Gohir.D10G212000' => 'ghi', 'Gohir.D11G085200' => 'ghi', 'Gohir.D11G346400' => 'ghi', 'Gohir.D12G104800' => 'ghi', 'Gorai.001G151300' => 'gra', 'Gorai.001G174100' => 'gra', 'Gorai.002G257000' => 'gra', 'Gorai.004G202600' => 'gra', 'Gorai.007G090900' => 'gra', 'Gorai.007G376700' => 'gra', 'Gorai.008G114100' => 'gra', 'Gorai.011G237900' => 'gra', 'GSVIVG01005450001' => 'vvi', 'GSVIVG01016232001' => 'vvi', 'GSVIVG01026157001' => 'vvi', 'GSVIVG01027419001' => 'vvi', 'GSVIVG01027631001' => 'vvi', 'GSVIVG01034143001' => 'vvi', 'HanXRQChr03g0093921' => 'han', 'HanXRQChr04g0120001' => 'han', 'HanXRQChr04g0122561' => 'han', 'HanXRQChr09g0246851' => 'han', 'HanXRQChr10g0293311' => 'han', 'HanXRQChr13g0425231' => 'han', 'HanXRQChr16g0532571' => 'han', 'Haze_09050' => 'cav', 'Haze_15715' => 'cav', 'Haze_15716' => 'cav', 'Haze_16803' => 'cav', 'Haze_16850' => 'cav', 'Hma1.2p1_0301F.1_g118655' => 'hma', 'Hma1.2p1_0309F.1_g120590' => 'hma', 'Hma1.2p1_0936F.1_g238900' => 'hma', 'Hma1.2p1_3552F.1_g336740' => 'hma', 'HPP92_003520' => 'vpl', 'HPP92_006628' => 'vpl', 'HPP92_006645' => 'vpl', 'HPP92_014669' => 'vpl', 'HPP92_015077' => 'vpl', 'Hund16742' => 'sun', 'Hund17022' => 'sun', 'Lalb_Chr02g0152131' => 'lal', 'Lalb_Chr05g0225371' => 'lal', 'Lalb_Chr07g0189841' => 'lal', 'Lalb_Chr07g0192961' => 'lal', 'Lalb_Chr12g0208221' => 'lal', 'Lalb_Chr13g0291211' => 'lal', 'Lalb_Chr13g0291781' => 'lal', 'Lalb_Chr18g0044651' => 'lal', 'Lalb_Chr21g0313731' => 'lal', 'Lj1g0022533' => 'lja', 'Lj2A18T50' => 'lonja', 'Lj2A92G93' => 'lonja', 'Lj3A965T73' => 'lonja', 'Lj3g0000673' => 'lja', 'Lj3g0002666' => 'lja', 'Lj4g0016985' => 'lja', 'Lj5g0003625' => 'lja', 'Lj7A529G36' => 'lonja', 'Lj9A569T49' => 'lonja', 'Lj9A604T63' => 'lonja', 'Lsat_1_v5_gn_3_132060' => 'lsa', 'Lsat_1_v5_gn_4_68941' => 'lsa', 'Lsat_1_v5_gn_5_95580' => 'lsa', 'Lsat_1_v5_gn_7_161' => 'lsa', 'Lsat_1_v5_gn_7_7041' => 'lsa', 'Lsat_1_v5_gn_9_33481' => 'lsa', 'Lsat_1_v5_gn_9_68260' => 'lsa', 'Manes.01G073100' => 'mes', 'Manes.01G266300' => 'mes', 'Manes.02G033300' => 'mes', 'Manes.05G017900' => 'mes', 'Manes.05G046100' => 'mes', 'Manes.08G080900' => 'mes', 'Manes.10G049400' => 'mes', 'Mapoly0009s0186' => 'mpo', 'Mapoly0036s0118' => 'mpo', 'Mapoly0101s0046' => 'mpo', 'MBI04_g30218_MAGBIO' => 'mbi', 'MBI04_g35564_MAGBIO' => 'mbi', 'MBI12_g34011_MAGBIO' => 'mbi', 'MBI14_g04655_MAGBIO' => 'mbi', 'MCO07G653' => 'mco', 'MCO10G173' => 'mco', 'MD01G1087100' => 'mdo', 'MD01G1104200' => 'mdo', 'MD02G1205100' => 'mdo', 'MD04G1079200' => 'mdo', 'MD04G1131400' => 'mdo', 'MD07G1121600' => 'mdo', 'MD07G1157300' => 'mdo', 'MD07G1171000' => 'mdo', 'MD12G1144500' => 'mdo', 'Medtr1g094610' => 'mtr', 'Medtr4g021795' => 'mtr', 'Medtr4g023760' => 'mtr', 'Medtr7g118050' => 'mtr', 'MELO3C005582.2' => 'cme', 'MELO3C005989.2' => 'cme', 'MELO3C006192.2' => 'cme', 'MELO3C009248.2' => 'cme', 'MELO3C019817.2' => 'cme', 'Migut.B01625' => 'egut', 'Migut.B01915' => 'egut', 'Migut.F01721' => 'egut', 'Migut.J00314' => 'egut', 'MSTRG.20742' => 'ama', 'MSTRG.8134' => 'ama', 'Nitab4.5_0000096g0010' => 'nta', 'Nitab4.5_0000202g0030' => 'nta', 'Nitab4.5_0000216g0370' => 'nta', 'Nitab4.5_0000457g0230' => 'nta', 'Nitab4.5_0001702g0170' => 'nta', 'Nitab4.5_0003607g0010' => 'nta', 'Nitab4.5_0004917g0020' => 'nta', 'Nitab4.5_0007059g0010' => 'nta', 'Nitab4.5_0007184g0010' => 'nta', 'Nitab4.5_0007346g0020' => 'nta', 'Nn1g00410' => 'nnu', 'Nn1g01252' => 'nnu', 'Nn2g11168' => 'nnu', 'Nn2g13403' => 'nnu', 'Nn2g13760' => 'nnu', 'Nn4g26380' => 'nnu', 'Oeu000806.2' => 'oeu', 'Oeu005788.1' => 'oeu', 'Oeu006900.3' => 'oeu', 'Oeu007797.1' => 'oeu', 'Oeu011932.1' => 'oeu', 'Oeu022739.1' => 'oeu', 'Oeu037918.1' => 'oeu', 'Oeu055490.2' => 'oeu', 'Os01g0844400' => 'osa', 'Os02g0819100' => 'osa', 'Os03g0804300' => 'osa', 'Os05g0458000' => 'osa', 'Os07g0467800' => 'osa', 'Os12g0602200' => 'osa', 'Peaxi162Scf00013g03444' => 'pax', 'Peaxi162Scf00094g01120' => 'pax', 'Peaxi162Scf00191g01211' => 'pax', 'Peaxi162Scf00238g01110' => 'pax', 'Peaxi162Scf00330g00719' => 'pax', 'Peaxi162Scf00627g00018' => 'pax', 'PGR031G2686' => 'pgr', 'PGR042G0809' => 'pgr', 'PGR142G0193' => 'pgr', 'PGSC0003DMG400011066' => 'stu', 'PGSC0003DMG400012041' => 'stu', 'PGSC0003DMG400013678' => 'stu', 'PGSC0003DMG400023477' => 'stu', 'PGSC0003DMG400025956' => 'stu', 'PGSC0003DMG401019151' => 'stu', 'Phvul.006G116400' => 'pvu', 'Phvul.007G097300' => 'pvu', 'Phvul.010G015000' => 'pvu', 'Phvul.010G083900' => 'pvu', 'Potri.001G117100' => 'ptr', 'Potri.002G147300' => 'ptr', 'Potri.003G115600' => 'ptr', 'Potri.006G087400' => 'ptr', 'Potri.010G226100' => 'ptr', 'Potri.014G069200' => 'ptr', 'Potri.014G104000' => 'ptr', 'Potri.016G100200' => 'ptr', 'Pp3c10_20450' => 'ppa', 'Pp3c1_42400' => 'ppa', 'Pp3c3_24390' => 'ppa', 'Pp3c3_2860' => 'ppa', 'PRCOL_00003193' => 'pco', 'Prupe.2G144500' => 'ppe', 'Prupe.2G195700' => 'ppe', 'Prupe.2G209800' => 'ppe', 'Prupe.5G080000' => 'ppe', 'Prupe.6G257900' => 'ppe', 'Psat3g001160' => 'psa', 'Psat6g181880' => 'psa', 'Psat7g233720' => 'psa', 'PSO063G7587' => 'pso', 'PSO339G2145' => 'pso', 'PSO339G3369' => 'pso', 'PSO478G2747' => 'pso', 'PSO513G0140' => 'pso', 'PSO782G1614' => 'pso', 'PSO782G4889' => 'pso', 'PSO782G5485' => 'pso', 'PSO801G0241' => 'pso', 'QL07p048854' => 'qlo', 'QL08p046745' => 'qlo', 'QL08p052606' => 'qlo', 'QL08p053414' => 'qlo', 'QL08p054868' => 'qlo', 'RcHm_v2.0_Chr1g0350251' => 'rch', 'RcHm_v2.0_Chr1g0360851' => 'rch', 'RcHm_v2.0_Chr1g0362791' => 'rch', 'RcHm_v2.0_Chr3g0466281' => 'rch', 'RcHm_v2.0_Chr7g0201481' => 'rch', 'Rhsim01G0148600' => 'rsi', 'Rhsim05G0194400' => 'rsi', 'Rhsim07G0000700' => 'rsi', 'Rhsim07G0000800' => 'rsi', 'Rhsim07G0027900' => 'rsi', 'Rhsim09G0149500' => 'rsi', 'RhsimUnG0186900' => 'rsi', 'Sabra01G0089900' => 'sbr', 'Sabra02G0114700' => 'sbr', 'Sabra02G0116300' => 'sbr', 'Sabra03G0080100' => 'sbr', 'Sabra08G0024300' => 'sbr', 'Sabra10G0174300' => 'sbr', 'Sabra14G0048900' => 'sbr', 'Sabra14G0076500' => 'sbr', 'SalBow5G2513' => 'sbo', 'Sc01g0002300' => 'sci', 'Sc01g0004450' => 'sci', 'Sc06g0001680' => 'sci', 'Sc23g0003580' => 'sci', 'Sed0000913' => 'sed', 'Sed0001655' => 'sed', 'Sed0007745' => 'sed', 'Sed0010951' => 'sed', 'Sed0017599' => 'sed', 'Sed0021405' => 'sed', 'Sed0022810' => 'sed', 'SEGI_07099' => 'sgi', 'SEGI_11931' => 'sgi', 'SEGI_13187' => 'sgi', 'SEGI_29958' => 'sgi', 'SEGI_36351' => 'sgi', 'SGA_v2.0_scaffold126G33770' => 'sas', 'SGA_v2.0_scaffold153G37003' => 'sas', 'SGA_v2.0_scaffold2G01359' => 'sas', 'SGA_v2.0_scaffold5G03064' => 'sas', 'SGA_v2.0_scaffold95G28903' => 'sas', 'SHI12701' => 'shi', 'SHI26410' => 'shi', 'SHI38997' => 'shi', 'SHI53759' => 'shi', 'SHI53886' => 'shi', 'SHI54714' => 'shi', 'SMO011G0041' => 'smo', 'SMO146G0251' => 'smo', 'SMO160G0004' => 'smo', 'SMO174G0057' => 'smo', 'SMO244G0089' => 'smo', 'SMO296G0011' => 'smo', 'Solyc01g091280.3' => 'sly', 'Solyc05g047610.3' => 'sly', 'Solyc05g047640.3' => 'sly', 'Solyc05g055630.3' => 'sly', 'Solyc10g018160.2' => 'sly', 'Solyc10g084820.2' => 'sly', 'Solyc10g086565.2' => 'sly', 'Sopen01g037030' => 'spe', 'Sopen05g027920' => 'spe', 'Sopen05g034070' => 'spe', 'Sopen10g007260' => 'spe', 'Sopen10g034260' => 'spe', 'Sopen10g035950' => 'spe', 'Sp3g07710' => 'spa', 'Sp4g27420' => 'spa', 'Sp5g02450' => 'spa', 'Sp6g01280' => 'spa', 'Sp6g38480' => 'spa', 'Sp7g20780' => 'spa', 'TAR374G1413' => 'tar', 'TAR623G1777' => 'tar', 'TAR629G2370' => 'tar', 'TAR633G1759' => 'tar', 'TAR636G3387' => 'tar', 'THA.LOC104802447' => 'tha', 'THA.LOC104813916' => 'tha', 'THA.LOC104816423' => 'tha', 'THA.LOC104817246' => 'tha', 'THA.LOC104825895' => 'tha', 'Thecc.01G335200' => 'tca', 'Thecc.01G377400' => 'tca', 'Thecc.03G262200' => 'tca', 'Thecc.05G036800' => 'tca', 'Thecc.10G080500' => 'tca', 'Thecc.10G080800' => 'tca', 'Thhalv10001560m.g' => 'esa', 'Thhalv10006120m.g' => 'esa', 'Thhalv10014375m.g' => 'esa', 'Thhalv10021264m.g' => 'esa', 'Thhalv10028856m.g' => 'esa', 'TPR.G1914' => 'tpr', 'TPR.G4757' => 'tpr', 'TPR.G5595' => 'tpr', 'TWI14G0952' => 'twi', 'TWI14G1307' => 'twi', 'TWI38G2143' => 'twi', 'TWI59G0826' => 'twi', 'TWI77G0527' => 'twi', 'TWI81G0150' => 'twi', 'unitig_21.g21018' => 'ugi', 'unitig_26.g9725' => 'ugi', 'unitig_744.g24653' => 'ugi', 'unitig_749.g13778' => 'ugi', 'unitig_899.g15035' => 'ugi', 'vmacro04296' => 'vma', 'vmacro04852' => 'vma', 'vmacro13404' => 'vma', 'vmacro20169' => 'vma', 'vmacro21014' => 'vma', 'VMungo0331G0237' => 'vmu', 'VMungo0331G0706' => 'vmu', 'VMungo0331G1361' => 'vmu', 'VMungo0331G1489' => 'vmu', 'VMungo0540G1037' => 'vmu', 'VMungo0720G2487' => 'vmu', 'VMungo0720G2721' => 'vmu', 'Zm00001eb086860' => 'zma', 'Zm00001eb104760' => 'zma', 'Zm00001eb148220' => 'zma', 'Zm00001eb259030' => 'zma', 'Zm00001eb289590' => 'zma', 'Zm00001eb420150' => 'zma' ), 'gf_id' => 'HOM05D000968', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000968' ), 'data_identifier' => 'HOM05D000968', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000968', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p31690' => 'bna', 'A03p36040' => 'bna', 'A03p53730' => 'bna', 'A04p01410' => 'bna', 'A05p05420' => 'bna', 'A05p39630' => 'bna', 'A05p39640' => 'bna', 'A09p00970' => 'bna', 'A09p53060' => 'bna', 'A10p31890' => 'bna', 'Aa31LG10G15040' => 'aar', 'Aa31LG1G21090' => 'aar', 'Aa31LG1G26900' => 'aar', 'Aa31LG3G1820' => 'aar', 'Aa31LG5G1100' => 'aar', 'Aa31LG6G4740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2265' => 'aag', 'Actinidia07998' => 'ach', 'Actinidia11266' => 'ach', 'Actinidia12682' => 'ach', 'Actinidia26479' => 'ach', 'Actinidia31406' => 'ach', 'Actinidia32437' => 'ach', 'Actinidia38862' => 'ach', 'Ah.05g174230' => 'amhyb', 'Ah.05g179070' => 'amhyb', 'Ah.05g179090' => 'amhyb', 'Ah.12g059950' => 'amhyb', 'AL3G20480' => 'aly', 'AL4G44520' => 'aly', 'AL5G43110' => 'aly', 'AL6G13890' => 'aly', 'AL6G52620' => 'aly', 'AL7G30830' => 'aly', 'Aqoxy1G00899' => 'aox', 'Aqoxy5G04333' => 'aox', 'Aqoxy7G00641' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3IZ0NN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4EF6AW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W9P8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79GA3M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C43NQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFCU6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G95YVJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCHK29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LU1UG8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX91RN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGB4B1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8DA0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9H7JI' => 'arhy', 'AT3G09320' => 'ath', 'AT3G60800' => 'ath', 'AT4G00840' => 'ath', 'AT4G22750' => 'ath', 'AT5G04270' => 'ath', 'ATR0090G003' => 'atr', 'ATR0559G349' => 'atr', 'ATR0680G261' => 'atr', 'ATR0810G048' => 'atr', 'Atru.chr12.831' => 'acertr', 'Atru.chr5.303' => 'acertr', 'Atru.chr5.748' => 'acertr', 'Atru.chr8.1999' => 'acertr', 'Atru.chr9.1436' => 'acertr', 'AUR62004211' => 'cqu', 'AUR62004548' => 'cqu', 'AUR62013637' => 'cqu', 'AUR62022662' => 'cqu', 'AUR62025777' => 'cqu', 'AUR62042386' => 'cqu', 'BcaB01g02310' => 'bca', 'BcaB01g06062' => 'bca', 'BcaB02g08975' => 'bca', 'BcaB02g08980' => 'bca', 'BcaC01g04228' => 'bca', 'BcaC01g06830' => 'bca', 'BcaC02g10186' => 'bca', 'BcaC02g12214' => 'bca', 'BcaC04g24101' => 'bca', 'BcaC05g29520' => 'bca', 'BcaC05g29661' => 'bca', 'BcaC06g32130' => 'bca', 'BcaC06g32131' => 'bca', 'BcaC07g40601' => 'bca', 'BcaC07g42641' => 'bca', 'BcaNung01038' => 'bca', 'BcaNung01676' => 'bca', 'BcaNung02480' => 'bca', 'BcaNung07376' => 'bca', 'BolC3t16146H' => 'bol', 'BolC3t16637H' => 'bol', 'BolC4t22257H' => 'bol', 'BolC4t24728H' => 'bol', 'BolC5t34517H' => 'bol', 'BolC7t45703H' => 'bol', 'BolC8t51166H' => 'bol', 'BolC9t53038H' => 'bol', 'BolC9t60000H' => 'bol', 'BraA01t01345Z' => 'bra', 'BraA01t01346Z' => 'bra', 'BraA01t01348Z' => 'bra', 'BraA03t12347Z' => 'bra', 'BraA03t12775Z' => 'bra', 'BraA03t14439Z' => 'bra', 'BraA04t15860Z' => 'bra', 'BraA05t19511Z' => 'bra', 'BraA05t22746Z' => 'bra', 'BraA09t35767Z' => 'bra', 'BraA09t40732Z' => 'bra', 'BraA10t45233Z' => 'bra', 'C03p38720' => 'bna', 'C03p43680' => 'bna', 'C04p06350' => 'bna', 'C04p31800' => 'bna', 'C05p58680' => 'bna', 'C07p52110' => 'bna', 'C08p35760' => 'bna', 'C09p01050' => 'bna', 'C09p72600' => 'bna', 'CAN.G106.2' => 'can', 'CAN.G1482.1' => 'can', 'CAN.G324.12' => 'can', 'CAN.G388.20' => 'can', 'CAN.G412.7' => 'can', 'CAN.G694.32' => 'can', 'CAN.G92.12' => 'can', 'CANSAT11G2353' => 'cansat', 'CANSAT21G1398' => 'cansat', 'CANSAT56G2456' => 'cansat', 'CANSAT56G3031' => 'cansat', 'CANSAT56G4539' => 'cansat', 'CARHR083680' => 'chi', 'CARHR171190' => 'chi', 'CARHR209010' => 'chi', 'CARHR229680' => 'chi', 'CARHR249490' => 'chi', 'Carub.0003s0844' => 'cru', 'Carub.0005s2755' => 'cru', 'Carub.0006s0322' => 'cru', 'Carub.0006s3586' => 'cru', 'Carub.0007s1855' => 'cru', 'Ca_07808_v3' => 'car', 'Ca_09535_v3' => 'car', 'Ca_10548_v3' => 'car', 'Ca_19913_v3' => 'car', 'Ca_19916_v3' => 'car', 'Ca_19975_v3' => 'car', 'CBR_g22876' => 'cbr', 'CBR_g22879' => 'cbr', 'CBR_g38491' => 'cbr', 'CBR_g54185' => 'cbr', 'CBR_g54190' => 'cbr', 'Cc02_g11020' => 'ccan', 'Cc02_g23920' => 'ccan', 'Cc02_g39860' => 'ccan', 'Cc02_g39870' => 'ccan', 'Cc03_g06760' => 'ccan', 'Cc06_g02450' => 'ccan', 'Cc09_g09450' => 'ccan', 'CDE02G1959' => 'cde', 'CDE04G0600' => 'cde', 'CDE07G1996' => 'cde', 'CDE07G2078' => 'cde', 'CDE11G0611' => 'cde', 'Cfa001683' => 'cfa', 'Cfa001734' => 'cfa', 'Cfa001737' => 'cfa', 'Cfa003751' => 'cfa', 'Cfa012019' => 'cfa', 'Cfa017353' => 'cfa', 'Cfa017732' => 'cfa', 'Cfa022464' => 'cfa', 'Ciclev10012400m.g' => 'ccl', 'Ciclev10021242m.g' => 'ccl', 'Ciclev10021302m.g' => 'ccl', 'Ciclev10021463m.g' => 'ccl', 'Ciclev10032359m.g' => 'ccl', 'CiPaw.01G081000' => 'cil', 'CiPaw.01G262500' => 'cil', 'CiPaw.01G269800' => 'cil', 'CiPaw.02G168400' => 'cil', 'CiPaw.05G119500' => 'cil', 'CiPaw.11G147300' => 'cil', 'ClCG01G003630' => 'cla', 'ClCG05G000510' => 'cla', 'ClCG05G002300' => 'cla', 'ClCG08G007650' => 'cla', 'ClCG10G021250' => 'cla', 'COL.COLO4_06218' => 'col', 'COL.COLO4_12538' => 'col', 'COL.COLO4_14775' => 'col', 'COL.COLO4_23875' => 'col', 'Cpa.g.sc141.16' => 'cpa', 'Cpa.g.sc169.16' => 'cpa', 'Cpa.g.sc244.4' => 'cpa', 'Cpa.g.sc244.5' => 'cpa', 'Cpa.g.sc29.87' => 'cpa', 'Cpa.g.sc53.115' => 'cpa', 'Cre03.g207502' => 'cre', 'Cre06.g277000' => 'cre', 'Cre09.g394050' => 'cre', 'CsaV3_3G007680' => 'csa', 'CsaV3_3G009710' => 'csa', 'CsaV3_3G034790' => 'csa', 'CsaV3_5G003750' => 'csa', 'CsaV3_6G036620' => 'csa', 'CSS0002288' => 'camsi', 'CSS0011250' => 'camsi', 'CSS0021619' => 'camsi', 'CSS0046701' => 'camsi', 'DCAR_006420' => 'dca', 'DCAR_006865' => 'dca', 'DCAR_008558' => 'dca', 'DCAR_028754' => 'dca', 'DCAR_028755' => 'dca', 'Dinv31218' => 'din', 'Dinv32371' => 'din', 'Dinv34250' => 'din', 'Dinv37156' => 'din', 'Dinv43704' => 'din', 'Duzib093G1811' => 'dzi', 'Duzib106G1622' => 'dzi', 'Duzib114G0504' => 'dzi', 'Duzib128G0338' => 'dzi', 'Duzib128G1577' => 'dzi', 'Duzib133G0104' => 'dzi', 'Duzib133G1080' => 'dzi', 'Duzib138G0324' => 'dzi', 'Duzib138G0394' => 'dzi', 'Duzib205G0122' => 'dzi', 'Duzib268G1020' => 'dzi', 'Duzib268G1359' => 'dzi', 'ECA232G3929' => 'eca', 'ECA236G2210' => 'eca', 'ECA236G2287' => 'eca', 'ECA240G4568' => 'eca', 'ECA247G0894' => 'eca', 'EL10Ac1g00200' => 'bvu', 'EL10Ac1g00886' => 'bvu', 'EL10As1g23091' => 'bvu', 'EL10As1g23092' => 'bvu', 'Eucgr.A01284' => 'egr', 'Eucgr.A01285' => 'egr', 'Eucgr.D02456' => 'egr', 'Eucgr.E00018' => 'egr', 'Eucgr.E01439' => 'egr', 'Eucgr.G02859' => 'egr', 'FAN01G0168' => 'fan', 'FAN01G0453' => 'fan', 'FAN01G2761' => 'fan', 'FAN02G1239' => 'fan', 'FAN03G0645' => 'fan', 'FAN03G2707' => 'fan', 'FAN03G2978' => 'fan', 'FAN04G0227' => 'fan', 'FAN06G0091' => 'fan', 'FAN06G1418' => 'fan', 'FAN06G1512' => 'fan', 'FAN06G1986' => 'fan', 'FAN06G2905' => 'fan', 'FAN06G4325' => 'fan', 'FAN08G0033' => 'fan', 'FAN09G0642' => 'fan', 'FAN10G1763' => 'fan', 'FAN10G2026' => 'fan', 'FAN10G2513' => 'fan', 'FAN10G3402' => 'fan', 'FAN10G3564' => 'fan', 'FAN10G3987' => 'fan', 'FAN13G1490' => 'fan', 'FAN14G5857' => 'fan', 'FAN18G1188' => 'fan', 'FvH4_5g00750' => 'fve', 'FvH4_6g13410' => 'fve', 'FvH4_7g11740' => 'fve', 'FvH4_7g17410' => 'fve', 'FvH4_7g18860' => 'fve', 'Glyma.01G099100' => 'gma', 'Glyma.01G142300' => 'gma', 'Glyma.03G025500' => 'gma', 'Glyma.03G069700' => 'gma', 'Glyma.03G260000' => 'gma', 'Glyma.09G269800' => 'gma', 'Glyma.10G208700' => 'gma', 'Glyma.18G220400' => 'gma', 'Glyma.20G182000' => 'gma', 'Gohir.A01G221726' => 'ghi', 'Gohir.A07G134600' => 'ghi', 'Gohir.A07G146000' => 'ghi', 'Gohir.A08G173900' => 'ghi', 'Gohir.A09G194900' => 'ghi', 'Gohir.A10G204100' => 'ghi', 'Gohir.A11G080600' => 'ghi', 'Gohir.A11G327500' => 'ghi', 'Gohir.A12G101800' => 'ghi', 'Gohir.D01G211200' => 'ghi', 'Gohir.D07G139200' => 'ghi', 'Gohir.D07G152100' => 'ghi', 'Gohir.D08G192600' => 'ghi', 'Gohir.D09G189200' => 'ghi', 'Gohir.D10G212000' => 'ghi', 'Gohir.D11G085200' => 'ghi', 'Gohir.D11G346400' => 'ghi', 'Gohir.D12G104800' => 'ghi', 'Gorai.001G151300' => 'gra', 'Gorai.001G174100' => 'gra', 'Gorai.002G257000' => 'gra', 'Gorai.004G202600' => 'gra', 'Gorai.007G090900' => 'gra', 'Gorai.007G376700' => 'gra', 'Gorai.008G114100' => 'gra', 'Gorai.011G237900' => 'gra', 'GSVIVG01005450001' => 'vvi', 'GSVIVG01016232001' => 'vvi', 'GSVIVG01026157001' => 'vvi', 'GSVIVG01027419001' => 'vvi', 'GSVIVG01027631001' => 'vvi', 'GSVIVG01034143001' => 'vvi', 'HanXRQChr03g0093921' => 'han', 'HanXRQChr04g0120001' => 'han', 'HanXRQChr04g0122561' => 'han', 'HanXRQChr09g0246851' => 'han', 'HanXRQChr10g0293311' => 'han', 'HanXRQChr13g0425231' => 'han', 'HanXRQChr16g0532571' => 'han', 'Haze_09050' => 'cav', 'Haze_15715' => 'cav', 'Haze_15716' => 'cav', 'Haze_16803' => 'cav', 'Haze_16850' => 'cav', 'Hma1.2p1_0301F.1_g118655' => 'hma', 'Hma1.2p1_0309F.1_g120590' => 'hma', 'Hma1.2p1_0936F.1_g238900' => 'hma', 'Hma1.2p1_3552F.1_g336740' => 'hma', 'HPP92_003520' => 'vpl', 'HPP92_006628' => 'vpl', 'HPP92_006645' => 'vpl', 'HPP92_014669' => 'vpl', 'HPP92_015077' => 'vpl', 'Hund16742' => 'sun', 'Hund17022' => 'sun', 'Lalb_Chr02g0152131' => 'lal', 'Lalb_Chr05g0225371' => 'lal', 'Lalb_Chr07g0189841' => 'lal', 'Lalb_Chr07g0192961' => 'lal', 'Lalb_Chr12g0208221' => 'lal', 'Lalb_Chr13g0291211' => 'lal', 'Lalb_Chr13g0291781' => 'lal', 'Lalb_Chr18g0044651' => 'lal', 'Lalb_Chr21g0313731' => 'lal', 'Lj1g0022533' => 'lja', 'Lj2A18T50' => 'lonja', 'Lj2A92G93' => 'lonja', 'Lj3A965T73' => 'lonja', 'Lj3g0000673' => 'lja', 'Lj3g0002666' => 'lja', 'Lj4g0016985' => 'lja', 'Lj5g0003625' => 'lja', 'Lj7A529G36' => 'lonja', 'Lj9A569T49' => 'lonja', 'Lj9A604T63' => 'lonja', 'Lsat_1_v5_gn_3_132060' => 'lsa', 'Lsat_1_v5_gn_4_68941' => 'lsa', 'Lsat_1_v5_gn_5_95580' => 'lsa', 'Lsat_1_v5_gn_7_161' => 'lsa', 'Lsat_1_v5_gn_7_7041' => 'lsa', 'Lsat_1_v5_gn_9_33481' => 'lsa', 'Lsat_1_v5_gn_9_68260' => 'lsa', 'Manes.01G073100' => 'mes', 'Manes.01G266300' => 'mes', 'Manes.02G033300' => 'mes', 'Manes.05G017900' => 'mes', 'Manes.05G046100' => 'mes', 'Manes.08G080900' => 'mes', 'Manes.10G049400' => 'mes', 'Mapoly0009s0186' => 'mpo', 'Mapoly0036s0118' => 'mpo', 'Mapoly0101s0046' => 'mpo', 'MBI04_g30218_MAGBIO' => 'mbi', 'MBI04_g35564_MAGBIO' => 'mbi', 'MBI12_g34011_MAGBIO' => 'mbi', 'MBI14_g04655_MAGBIO' => 'mbi', 'MCO07G653' => 'mco', 'MCO10G173' => 'mco', 'MD01G1087100' => 'mdo', 'MD01G1104200' => 'mdo', 'MD02G1205100' => 'mdo', 'MD04G1079200' => 'mdo', 'MD04G1131400' => 'mdo', 'MD07G1121600' => 'mdo', 'MD07G1157300' => 'mdo', 'MD07G1171000' => 'mdo', 'MD12G1144500' => 'mdo', 'Medtr1g094610' => 'mtr', 'Medtr4g021795' => 'mtr', 'Medtr4g023760' => 'mtr', 'Medtr7g118050' => 'mtr', 'MELO3C005582.2' => 'cme', 'MELO3C005989.2' => 'cme', 'MELO3C006192.2' => 'cme', 'MELO3C009248.2' => 'cme', 'MELO3C019817.2' => 'cme', 'Migut.B01625' => 'egut', 'Migut.B01915' => 'egut', 'Migut.F01721' => 'egut', 'Migut.J00314' => 'egut', 'MSTRG.20742' => 'ama', 'MSTRG.8134' => 'ama', 'Nitab4.5_0000096g0010' => 'nta', 'Nitab4.5_0000202g0030' => 'nta', 'Nitab4.5_0000216g0370' => 'nta', 'Nitab4.5_0000457g0230' => 'nta', 'Nitab4.5_0001702g0170' => 'nta', 'Nitab4.5_0003607g0010' => 'nta', 'Nitab4.5_0004917g0020' => 'nta', 'Nitab4.5_0007059g0010' => 'nta', 'Nitab4.5_0007184g0010' => 'nta', 'Nitab4.5_0007346g0020' => 'nta', 'Nn1g00410' => 'nnu', 'Nn1g01252' => 'nnu', 'Nn2g11168' => 'nnu', 'Nn2g13403' => 'nnu', 'Nn2g13760' => 'nnu', 'Nn4g26380' => 'nnu', 'Oeu000806.2' => 'oeu', 'Oeu005788.1' => 'oeu', 'Oeu006900.3' => 'oeu', 'Oeu007797.1' => 'oeu', 'Oeu011932.1' => 'oeu', 'Oeu022739.1' => 'oeu', 'Oeu037918.1' => 'oeu', 'Oeu055490.2' => 'oeu', 'Os01g0844400' => 'osa', 'Os02g0819100' => 'osa', 'Os03g0804300' => 'osa', 'Os05g0458000' => 'osa', 'Os07g0467800' => 'osa', 'Os12g0602200' => 'osa', 'Peaxi162Scf00013g03444' => 'pax', 'Peaxi162Scf00094g01120' => 'pax', 'Peaxi162Scf00191g01211' => 'pax', 'Peaxi162Scf00238g01110' => 'pax', 'Peaxi162Scf00330g00719' => 'pax', 'Peaxi162Scf00627g00018' => 'pax', 'PGR031G2686' => 'pgr', 'PGR042G0809' => 'pgr', 'PGR142G0193' => 'pgr', 'PGSC0003DMG400011066' => 'stu', 'PGSC0003DMG400012041' => 'stu', 'PGSC0003DMG400013678' => 'stu', 'PGSC0003DMG400023477' => 'stu', 'PGSC0003DMG400025956' => 'stu', 'PGSC0003DMG401019151' => 'stu', 'Phvul.006G116400' => 'pvu', 'Phvul.007G097300' => 'pvu', 'Phvul.010G015000' => 'pvu', 'Phvul.010G083900' => 'pvu', 'Potri.001G117100' => 'ptr', 'Potri.002G147300' => 'ptr', 'Potri.003G115600' => 'ptr', 'Potri.006G087400' => 'ptr', 'Potri.010G226100' => 'ptr', 'Potri.014G069200' => 'ptr', 'Potri.014G104000' => 'ptr', 'Potri.016G100200' => 'ptr', 'Pp3c10_20450' => 'ppa', 'Pp3c1_42400' => 'ppa', 'Pp3c3_24390' => 'ppa', 'Pp3c3_2860' => 'ppa', 'PRCOL_00003193' => 'pco', 'Prupe.2G144500' => 'ppe', 'Prupe.2G195700' => 'ppe', 'Prupe.2G209800' => 'ppe', 'Prupe.5G080000' => 'ppe', 'Prupe.6G257900' => 'ppe', 'Psat3g001160' => 'psa', 'Psat6g181880' => 'psa', 'Psat7g233720' => 'psa', 'PSO063G7587' => 'pso', 'PSO339G2145' => 'pso', 'PSO339G3369' => 'pso', 'PSO478G2747' => 'pso', 'PSO513G0140' => 'pso', 'PSO782G1614' => 'pso', 'PSO782G4889' => 'pso', 'PSO782G5485' => 'pso', 'PSO801G0241' => 'pso', 'QL07p048854' => 'qlo', 'QL08p046745' => 'qlo', 'QL08p052606' => 'qlo', 'QL08p053414' => 'qlo', 'QL08p054868' => 'qlo', 'RcHm_v2.0_Chr1g0350251' => 'rch', 'RcHm_v2.0_Chr1g0360851' => 'rch', 'RcHm_v2.0_Chr1g0362791' => 'rch', 'RcHm_v2.0_Chr3g0466281' => 'rch', 'RcHm_v2.0_Chr7g0201481' => 'rch', 'Rhsim01G0148600' => 'rsi', 'Rhsim05G0194400' => 'rsi', 'Rhsim07G0000700' => 'rsi', 'Rhsim07G0000800' => 'rsi', 'Rhsim07G0027900' => 'rsi', 'Rhsim09G0149500' => 'rsi', 'RhsimUnG0186900' => 'rsi', 'Sabra01G0089900' => 'sbr', 'Sabra02G0114700' => 'sbr', 'Sabra02G0116300' => 'sbr', 'Sabra03G0080100' => 'sbr', 'Sabra08G0024300' => 'sbr', 'Sabra10G0174300' => 'sbr', 'Sabra14G0048900' => 'sbr', 'Sabra14G0076500' => 'sbr', 'SalBow5G2513' => 'sbo', 'Sc01g0002300' => 'sci', 'Sc01g0004450' => 'sci', 'Sc06g0001680' => 'sci', 'Sc23g0003580' => 'sci', 'Sed0000913' => 'sed', 'Sed0001655' => 'sed', 'Sed0007745' => 'sed', 'Sed0010951' => 'sed', 'Sed0017599' => 'sed', 'Sed0021405' => 'sed', 'Sed0022810' => 'sed', 'SEGI_07099' => 'sgi', 'SEGI_11931' => 'sgi', 'SEGI_13187' => 'sgi', 'SEGI_29958' => 'sgi', 'SEGI_36351' => 'sgi', 'SGA_v2.0_scaffold126G33770' => 'sas', 'SGA_v2.0_scaffold153G37003' => 'sas', 'SGA_v2.0_scaffold2G01359' => 'sas', 'SGA_v2.0_scaffold5G03064' => 'sas', 'SGA_v2.0_scaffold95G28903' => 'sas', 'SHI12701' => 'shi', 'SHI26410' => 'shi', 'SHI38997' => 'shi', 'SHI53759' => 'shi', 'SHI53886' => 'shi', 'SHI54714' => 'shi', 'SMO011G0041' => 'smo', 'SMO146G0251' => 'smo', 'SMO160G0004' => 'smo', 'SMO174G0057' => 'smo', 'SMO244G0089' => 'smo', 'SMO296G0011' => 'smo', 'Solyc01g091280.3' => 'sly', 'Solyc05g047610.3' => 'sly', 'Solyc05g047640.3' => 'sly', 'Solyc05g055630.3' => 'sly', 'Solyc10g018160.2' => 'sly', 'Solyc10g084820.2' => 'sly', 'Solyc10g086565.2' => 'sly', 'Sopen01g037030' => 'spe', 'Sopen05g027920' => 'spe', 'Sopen05g034070' => 'spe', 'Sopen10g007260' => 'spe', 'Sopen10g034260' => 'spe', 'Sopen10g035950' => 'spe', 'Sp3g07710' => 'spa', 'Sp4g27420' => 'spa', 'Sp5g02450' => 'spa', 'Sp6g01280' => 'spa', 'Sp6g38480' => 'spa', 'Sp7g20780' => 'spa', 'TAR374G1413' => 'tar', 'TAR623G1777' => 'tar', 'TAR629G2370' => 'tar', 'TAR633G1759' => 'tar', 'TAR636G3387' => 'tar', 'THA.LOC104802447' => 'tha', 'THA.LOC104813916' => 'tha', 'THA.LOC104816423' => 'tha', 'THA.LOC104817246' => 'tha', 'THA.LOC104825895' => 'tha', 'Thecc.01G335200' => 'tca', 'Thecc.01G377400' => 'tca', 'Thecc.03G262200' => 'tca', 'Thecc.05G036800' => 'tca', 'Thecc.10G080500' => 'tca', 'Thecc.10G080800' => 'tca', 'Thhalv10001560m.g' => 'esa', 'Thhalv10006120m.g' => 'esa', 'Thhalv10014375m.g' => 'esa', 'Thhalv10021264m.g' => 'esa', 'Thhalv10028856m.g' => 'esa', 'TPR.G1914' => 'tpr', 'TPR.G4757' => 'tpr', 'TPR.G5595' => 'tpr', 'TWI14G0952' => 'twi', 'TWI14G1307' => 'twi', 'TWI38G2143' => 'twi', 'TWI59G0826' => 'twi', 'TWI77G0527' => 'twi', 'TWI81G0150' => 'twi', 'unitig_21.g21018' => 'ugi', 'unitig_26.g9725' => 'ugi', 'unitig_744.g24653' => 'ugi', 'unitig_749.g13778' => 'ugi', 'unitig_899.g15035' => 'ugi', 'vmacro04296' => 'vma', 'vmacro04852' => 'vma', 'vmacro13404' => 'vma', 'vmacro20169' => 'vma', 'vmacro21014' => 'vma', 'VMungo0331G0237' => 'vmu', 'VMungo0331G0706' => 'vmu', 'VMungo0331G1361' => 'vmu', 'VMungo0331G1489' => 'vmu', 'VMungo0540G1037' => 'vmu', 'VMungo0720G2487' => 'vmu', 'VMungo0720G2721' => 'vmu', 'Zm00001eb086860' => 'zma', 'Zm00001eb104760' => 'zma', 'Zm00001eb148220' => 'zma', 'Zm00001eb259030' => 'zma', 'Zm00001eb289590' => 'zma', 'Zm00001eb420150' => 'zma' ) $gf_id = 'HOM05D000968' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000968' ) $data_identifier = 'HOM05D000968' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 19, 'bol' => (int) 9, 'bra' => (int) 12, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 5, 'ccan' => (int) 7, 'cde' => (int) 5, 'cfa' => (int) 8, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 4, 'dca' => (int) 5, 'din' => (int) 5, 'dzi' => (int) 12, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 25, 'fve' => (int) 5, 'gma' => (int) 9, 'ghi' => (int) 18, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 7, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 5, 'sun' => (int) 2, 'lal' => (int) 9, 'lja' => (int) 5, 'lonja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 9, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 2, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 3, 'stu' => (int) 6, 'pvu' => (int) 4, 'ptr' => (int) 8, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 3, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 1, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 5, 'sas' => (int) 5, 'shi' => (int) 6, 'smo' => (int) 6, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 3, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420150' $species_info = array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ) $local_species = 'atr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000968', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p31690' => 'bna', 'A03p36040' => 'bna', 'A03p53730' => 'bna', 'A04p01410' => 'bna', 'A05p05420' => 'bna', 'A05p39630' => 'bna', 'A05p39640' => 'bna', 'A09p00970' => 'bna', 'A09p53060' => 'bna', 'A10p31890' => 'bna', 'Aa31LG10G15040' => 'aar', 'Aa31LG1G21090' => 'aar', 'Aa31LG1G26900' => 'aar', 'Aa31LG3G1820' => 'aar', 'Aa31LG5G1100' => 'aar', 'Aa31LG6G4740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2265' => 'aag', 'Actinidia07998' => 'ach', 'Actinidia11266' => 'ach', 'Actinidia12682' => 'ach', 'Actinidia26479' => 'ach', 'Actinidia31406' => 'ach', 'Actinidia32437' => 'ach', 'Actinidia38862' => 'ach', 'Ah.05g174230' => 'amhyb', 'Ah.05g179070' => 'amhyb', 'Ah.05g179090' => 'amhyb', 'Ah.12g059950' => 'amhyb', 'AL3G20480' => 'aly', 'AL4G44520' => 'aly', 'AL5G43110' => 'aly', 'AL6G13890' => 'aly', 'AL6G52620' => 'aly', 'AL7G30830' => 'aly', 'Aqoxy1G00899' => 'aox', 'Aqoxy5G04333' => 'aox', 'Aqoxy7G00641' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3IZ0NN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4EF6AW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W9P8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79GA3M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C43NQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFCU6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G95YVJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCHK29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LU1UG8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX91RN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGB4B1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8DA0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9H7JI' => 'arhy', 'AT3G09320' => 'ath', 'AT3G60800' => 'ath', 'AT4G00840' => 'ath', 'AT4G22750' => 'ath', 'AT5G04270' => 'ath', 'ATR0090G003' => 'atr', 'ATR0559G349' => 'atr', 'ATR0680G261' => 'atr', 'ATR0810G048' => 'atr', 'Atru.chr12.831' => 'acertr', 'Atru.chr5.303' => 'acertr', 'Atru.chr5.748' => 'acertr', 'Atru.chr8.1999' => 'acertr', 'Atru.chr9.1436' => 'acertr', 'AUR62004211' => 'cqu', 'AUR62004548' => 'cqu', 'AUR62013637' => 'cqu', 'AUR62022662' => 'cqu', 'AUR62025777' => 'cqu', 'AUR62042386' => 'cqu', 'BcaB01g02310' => 'bca', 'BcaB01g06062' => 'bca', 'BcaB02g08975' => 'bca', 'BcaB02g08980' => 'bca', 'BcaC01g04228' => 'bca', 'BcaC01g06830' => 'bca', 'BcaC02g10186' => 'bca', 'BcaC02g12214' => 'bca', 'BcaC04g24101' => 'bca', 'BcaC05g29520' => 'bca', 'BcaC05g29661' => 'bca', 'BcaC06g32130' => 'bca', 'BcaC06g32131' => 'bca', 'BcaC07g40601' => 'bca', 'BcaC07g42641' => 'bca', 'BcaNung01038' => 'bca', 'BcaNung01676' => 'bca', 'BcaNung02480' => 'bca', 'BcaNung07376' => 'bca', 'BolC3t16146H' => 'bol', 'BolC3t16637H' => 'bol', 'BolC4t22257H' => 'bol', 'BolC4t24728H' => 'bol', 'BolC5t34517H' => 'bol', 'BolC7t45703H' => 'bol', 'BolC8t51166H' => 'bol', 'BolC9t53038H' => 'bol', 'BolC9t60000H' => 'bol', 'BraA01t01345Z' => 'bra', 'BraA01t01346Z' => 'bra', 'BraA01t01348Z' => 'bra', 'BraA03t12347Z' => 'bra', 'BraA03t12775Z' => 'bra', 'BraA03t14439Z' => 'bra', 'BraA04t15860Z' => 'bra', 'BraA05t19511Z' => 'bra', 'BraA05t22746Z' => 'bra', 'BraA09t35767Z' => 'bra', 'BraA09t40732Z' => 'bra', 'BraA10t45233Z' => 'bra', 'C03p38720' => 'bna', 'C03p43680' => 'bna', 'C04p06350' => 'bna', 'C04p31800' => 'bna', 'C05p58680' => 'bna', 'C07p52110' => 'bna', 'C08p35760' => 'bna', 'C09p01050' => 'bna', 'C09p72600' => 'bna', 'CAN.G106.2' => 'can', 'CAN.G1482.1' => 'can', 'CAN.G324.12' => 'can', 'CAN.G388.20' => 'can', 'CAN.G412.7' => 'can', 'CAN.G694.32' => 'can', 'CAN.G92.12' => 'can', 'CANSAT11G2353' => 'cansat', 'CANSAT21G1398' => 'cansat', 'CANSAT56G2456' => 'cansat', 'CANSAT56G3031' => 'cansat', 'CANSAT56G4539' => 'cansat', 'CARHR083680' => 'chi', 'CARHR171190' => 'chi', 'CARHR209010' => 'chi', 'CARHR229680' => 'chi', 'CARHR249490' => 'chi', 'Carub.0003s0844' => 'cru', 'Carub.0005s2755' => 'cru', 'Carub.0006s0322' => 'cru', 'Carub.0006s3586' => 'cru', 'Carub.0007s1855' => 'cru', 'Ca_07808_v3' => 'car', 'Ca_09535_v3' => 'car', 'Ca_10548_v3' => 'car', 'Ca_19913_v3' => 'car', 'Ca_19916_v3' => 'car', 'Ca_19975_v3' => 'car', 'CBR_g22876' => 'cbr', 'CBR_g22879' => 'cbr', 'CBR_g38491' => 'cbr', 'CBR_g54185' => 'cbr', 'CBR_g54190' => 'cbr', 'Cc02_g11020' => 'ccan', 'Cc02_g23920' => 'ccan', 'Cc02_g39860' => 'ccan', 'Cc02_g39870' => 'ccan', 'Cc03_g06760' => 'ccan', 'Cc06_g02450' => 'ccan', 'Cc09_g09450' => 'ccan', 'CDE02G1959' => 'cde', 'CDE04G0600' => 'cde', 'CDE07G1996' => 'cde', 'CDE07G2078' => 'cde', 'CDE11G0611' => 'cde', 'Cfa001683' => 'cfa', 'Cfa001734' => 'cfa', 'Cfa001737' => 'cfa', 'Cfa003751' => 'cfa', 'Cfa012019' => 'cfa', 'Cfa017353' => 'cfa', 'Cfa017732' => 'cfa', 'Cfa022464' => 'cfa', 'Ciclev10012400m.g' => 'ccl', 'Ciclev10021242m.g' => 'ccl', 'Ciclev10021302m.g' => 'ccl', 'Ciclev10021463m.g' => 'ccl', 'Ciclev10032359m.g' => 'ccl', 'CiPaw.01G081000' => 'cil', 'CiPaw.01G262500' => 'cil', 'CiPaw.01G269800' => 'cil', 'CiPaw.02G168400' => 'cil', 'CiPaw.05G119500' => 'cil', 'CiPaw.11G147300' => 'cil', 'ClCG01G003630' => 'cla', 'ClCG05G000510' => 'cla', 'ClCG05G002300' => 'cla', 'ClCG08G007650' => 'cla', 'ClCG10G021250' => 'cla', 'COL.COLO4_06218' => 'col', 'COL.COLO4_12538' => 'col', 'COL.COLO4_14775' => 'col', 'COL.COLO4_23875' => 'col', 'Cpa.g.sc141.16' => 'cpa', 'Cpa.g.sc169.16' => 'cpa', 'Cpa.g.sc244.4' => 'cpa', 'Cpa.g.sc244.5' => 'cpa', 'Cpa.g.sc29.87' => 'cpa', 'Cpa.g.sc53.115' => 'cpa', 'Cre03.g207502' => 'cre', 'Cre06.g277000' => 'cre', 'Cre09.g394050' => 'cre', 'CsaV3_3G007680' => 'csa', 'CsaV3_3G009710' => 'csa', 'CsaV3_3G034790' => 'csa', 'CsaV3_5G003750' => 'csa', 'CsaV3_6G036620' => 'csa', 'CSS0002288' => 'camsi', 'CSS0011250' => 'camsi', 'CSS0021619' => 'camsi', 'CSS0046701' => 'camsi', 'DCAR_006420' => 'dca', 'DCAR_006865' => 'dca', 'DCAR_008558' => 'dca', 'DCAR_028754' => 'dca', 'DCAR_028755' => 'dca', 'Dinv31218' => 'din', 'Dinv32371' => 'din', 'Dinv34250' => 'din', 'Dinv37156' => 'din', 'Dinv43704' => 'din', 'Duzib093G1811' => 'dzi', 'Duzib106G1622' => 'dzi', 'Duzib114G0504' => 'dzi', 'Duzib128G0338' => 'dzi', 'Duzib128G1577' => 'dzi', 'Duzib133G0104' => 'dzi', 'Duzib133G1080' => 'dzi', 'Duzib138G0324' => 'dzi', 'Duzib138G0394' => 'dzi', 'Duzib205G0122' => 'dzi', 'Duzib268G1020' => 'dzi', 'Duzib268G1359' => 'dzi', 'ECA232G3929' => 'eca', 'ECA236G2210' => 'eca', 'ECA236G2287' => 'eca', 'ECA240G4568' => 'eca', 'ECA247G0894' => 'eca', 'EL10Ac1g00200' => 'bvu', 'EL10Ac1g00886' => 'bvu', 'EL10As1g23091' => 'bvu', 'EL10As1g23092' => 'bvu', 'Eucgr.A01284' => 'egr', 'Eucgr.A01285' => 'egr', 'Eucgr.D02456' => 'egr', 'Eucgr.E00018' => 'egr', 'Eucgr.E01439' => 'egr', 'Eucgr.G02859' => 'egr', 'FAN01G0168' => 'fan', 'FAN01G0453' => 'fan', 'FAN01G2761' => 'fan', 'FAN02G1239' => 'fan', 'FAN03G0645' => 'fan', 'FAN03G2707' => 'fan', 'FAN03G2978' => 'fan', 'FAN04G0227' => 'fan', 'FAN06G0091' => 'fan', 'FAN06G1418' => 'fan', 'FAN06G1512' => 'fan', 'FAN06G1986' => 'fan', 'FAN06G2905' => 'fan', 'FAN06G4325' => 'fan', 'FAN08G0033' => 'fan', 'FAN09G0642' => 'fan', 'FAN10G1763' => 'fan', 'FAN10G2026' => 'fan', 'FAN10G2513' => 'fan', 'FAN10G3402' => 'fan', 'FAN10G3564' => 'fan', 'FAN10G3987' => 'fan', 'FAN13G1490' => 'fan', 'FAN14G5857' => 'fan', 'FAN18G1188' => 'fan', 'FvH4_5g00750' => 'fve', 'FvH4_6g13410' => 'fve', 'FvH4_7g11740' => 'fve', 'FvH4_7g17410' => 'fve', 'FvH4_7g18860' => 'fve', 'Glyma.01G099100' => 'gma', 'Glyma.01G142300' => 'gma', 'Glyma.03G025500' => 'gma', 'Glyma.03G069700' => 'gma', 'Glyma.03G260000' => 'gma', 'Glyma.09G269800' => 'gma', 'Glyma.10G208700' => 'gma', 'Glyma.18G220400' => 'gma', 'Glyma.20G182000' => 'gma', 'Gohir.A01G221726' => 'ghi', 'Gohir.A07G134600' => 'ghi', 'Gohir.A07G146000' => 'ghi', 'Gohir.A08G173900' => 'ghi', 'Gohir.A09G194900' => 'ghi', 'Gohir.A10G204100' => 'ghi', 'Gohir.A11G080600' => 'ghi', 'Gohir.A11G327500' => 'ghi', 'Gohir.A12G101800' => 'ghi', 'Gohir.D01G211200' => 'ghi', 'Gohir.D07G139200' => 'ghi', 'Gohir.D07G152100' => 'ghi', 'Gohir.D08G192600' => 'ghi', 'Gohir.D09G189200' => 'ghi', 'Gohir.D10G212000' => 'ghi', 'Gohir.D11G085200' => 'ghi', 'Gohir.D11G346400' => 'ghi', 'Gohir.D12G104800' => 'ghi', 'Gorai.001G151300' => 'gra', 'Gorai.001G174100' => 'gra', 'Gorai.002G257000' => 'gra', 'Gorai.004G202600' => 'gra', 'Gorai.007G090900' => 'gra', 'Gorai.007G376700' => 'gra', 'Gorai.008G114100' => 'gra', 'Gorai.011G237900' => 'gra', 'GSVIVG01005450001' => 'vvi', 'GSVIVG01016232001' => 'vvi', 'GSVIVG01026157001' => 'vvi', 'GSVIVG01027419001' => 'vvi', 'GSVIVG01027631001' => 'vvi', 'GSVIVG01034143001' => 'vvi', 'HanXRQChr03g0093921' => 'han', 'HanXRQChr04g0120001' => 'han', 'HanXRQChr04g0122561' => 'han', 'HanXRQChr09g0246851' => 'han', 'HanXRQChr10g0293311' => 'han', 'HanXRQChr13g0425231' => 'han', 'HanXRQChr16g0532571' => 'han', 'Haze_09050' => 'cav', 'Haze_15715' => 'cav', 'Haze_15716' => 'cav', 'Haze_16803' => 'cav', 'Haze_16850' => 'cav', 'Hma1.2p1_0301F.1_g118655' => 'hma', 'Hma1.2p1_0309F.1_g120590' => 'hma', 'Hma1.2p1_0936F.1_g238900' => 'hma', 'Hma1.2p1_3552F.1_g336740' => 'hma', 'HPP92_003520' => 'vpl', 'HPP92_006628' => 'vpl', 'HPP92_006645' => 'vpl', 'HPP92_014669' => 'vpl', 'HPP92_015077' => 'vpl', 'Hund16742' => 'sun', 'Hund17022' => 'sun', 'Lalb_Chr02g0152131' => 'lal', 'Lalb_Chr05g0225371' => 'lal', 'Lalb_Chr07g0189841' => 'lal', 'Lalb_Chr07g0192961' => 'lal', 'Lalb_Chr12g0208221' => 'lal', 'Lalb_Chr13g0291211' => 'lal', 'Lalb_Chr13g0291781' => 'lal', 'Lalb_Chr18g0044651' => 'lal', 'Lalb_Chr21g0313731' => 'lal', 'Lj1g0022533' => 'lja', 'Lj2A18T50' => 'lonja', 'Lj2A92G93' => 'lonja', 'Lj3A965T73' => 'lonja', 'Lj3g0000673' => 'lja', 'Lj3g0002666' => 'lja', 'Lj4g0016985' => 'lja', 'Lj5g0003625' => 'lja', 'Lj7A529G36' => 'lonja', 'Lj9A569T49' => 'lonja', 'Lj9A604T63' => 'lonja', 'Lsat_1_v5_gn_3_132060' => 'lsa', 'Lsat_1_v5_gn_4_68941' => 'lsa', 'Lsat_1_v5_gn_5_95580' => 'lsa', 'Lsat_1_v5_gn_7_161' => 'lsa', 'Lsat_1_v5_gn_7_7041' => 'lsa', 'Lsat_1_v5_gn_9_33481' => 'lsa', 'Lsat_1_v5_gn_9_68260' => 'lsa', 'Manes.01G073100' => 'mes', 'Manes.01G266300' => 'mes', 'Manes.02G033300' => 'mes', 'Manes.05G017900' => 'mes', 'Manes.05G046100' => 'mes', 'Manes.08G080900' => 'mes', 'Manes.10G049400' => 'mes', 'Mapoly0009s0186' => 'mpo', 'Mapoly0036s0118' => 'mpo', 'Mapoly0101s0046' => 'mpo', 'MBI04_g30218_MAGBIO' => 'mbi', 'MBI04_g35564_MAGBIO' => 'mbi', 'MBI12_g34011_MAGBIO' => 'mbi', 'MBI14_g04655_MAGBIO' => 'mbi', 'MCO07G653' => 'mco', 'MCO10G173' => 'mco', 'MD01G1087100' => 'mdo', 'MD01G1104200' => 'mdo', 'MD02G1205100' => 'mdo', 'MD04G1079200' => 'mdo', 'MD04G1131400' => 'mdo', 'MD07G1121600' => 'mdo', 'MD07G1157300' => 'mdo', 'MD07G1171000' => 'mdo', 'MD12G1144500' => 'mdo', 'Medtr1g094610' => 'mtr', 'Medtr4g021795' => 'mtr', 'Medtr4g023760' => 'mtr', 'Medtr7g118050' => 'mtr', 'MELO3C005582.2' => 'cme', 'MELO3C005989.2' => 'cme', 'MELO3C006192.2' => 'cme', 'MELO3C009248.2' => 'cme', 'MELO3C019817.2' => 'cme', 'Migut.B01625' => 'egut', 'Migut.B01915' => 'egut', 'Migut.F01721' => 'egut', 'Migut.J00314' => 'egut', 'MSTRG.20742' => 'ama', 'MSTRG.8134' => 'ama', 'Nitab4.5_0000096g0010' => 'nta', 'Nitab4.5_0000202g0030' => 'nta', 'Nitab4.5_0000216g0370' => 'nta', 'Nitab4.5_0000457g0230' => 'nta', 'Nitab4.5_0001702g0170' => 'nta', 'Nitab4.5_0003607g0010' => 'nta', 'Nitab4.5_0004917g0020' => 'nta', 'Nitab4.5_0007059g0010' => 'nta', 'Nitab4.5_0007184g0010' => 'nta', 'Nitab4.5_0007346g0020' => 'nta', 'Nn1g00410' => 'nnu', 'Nn1g01252' => 'nnu', 'Nn2g11168' => 'nnu', 'Nn2g13403' => 'nnu', 'Nn2g13760' => 'nnu', 'Nn4g26380' => 'nnu', 'Oeu000806.2' => 'oeu', 'Oeu005788.1' => 'oeu', 'Oeu006900.3' => 'oeu', 'Oeu007797.1' => 'oeu', 'Oeu011932.1' => 'oeu', 'Oeu022739.1' => 'oeu', 'Oeu037918.1' => 'oeu', 'Oeu055490.2' => 'oeu', 'Os01g0844400' => 'osa', 'Os02g0819100' => 'osa', 'Os03g0804300' => 'osa', 'Os05g0458000' => 'osa', 'Os07g0467800' => 'osa', 'Os12g0602200' => 'osa', 'Peaxi162Scf00013g03444' => 'pax', 'Peaxi162Scf00094g01120' => 'pax', 'Peaxi162Scf00191g01211' => 'pax', 'Peaxi162Scf00238g01110' => 'pax', 'Peaxi162Scf00330g00719' => 'pax', 'Peaxi162Scf00627g00018' => 'pax', 'PGR031G2686' => 'pgr', 'PGR042G0809' => 'pgr', 'PGR142G0193' => 'pgr', 'PGSC0003DMG400011066' => 'stu', 'PGSC0003DMG400012041' => 'stu', 'PGSC0003DMG400013678' => 'stu', 'PGSC0003DMG400023477' => 'stu', 'PGSC0003DMG400025956' => 'stu', 'PGSC0003DMG401019151' => 'stu', 'Phvul.006G116400' => 'pvu', 'Phvul.007G097300' => 'pvu', 'Phvul.010G015000' => 'pvu', 'Phvul.010G083900' => 'pvu', 'Potri.001G117100' => 'ptr', 'Potri.002G147300' => 'ptr', 'Potri.003G115600' => 'ptr', 'Potri.006G087400' => 'ptr', 'Potri.010G226100' => 'ptr', 'Potri.014G069200' => 'ptr', 'Potri.014G104000' => 'ptr', 'Potri.016G100200' => 'ptr', 'Pp3c10_20450' => 'ppa', 'Pp3c1_42400' => 'ppa', 'Pp3c3_24390' => 'ppa', 'Pp3c3_2860' => 'ppa', 'PRCOL_00003193' => 'pco', 'Prupe.2G144500' => 'ppe', 'Prupe.2G195700' => 'ppe', 'Prupe.2G209800' => 'ppe', 'Prupe.5G080000' => 'ppe', 'Prupe.6G257900' => 'ppe', 'Psat3g001160' => 'psa', 'Psat6g181880' => 'psa', 'Psat7g233720' => 'psa', 'PSO063G7587' => 'pso', 'PSO339G2145' => 'pso', 'PSO339G3369' => 'pso', 'PSO478G2747' => 'pso', 'PSO513G0140' => 'pso', 'PSO782G1614' => 'pso', 'PSO782G4889' => 'pso', 'PSO782G5485' => 'pso', 'PSO801G0241' => 'pso', 'QL07p048854' => 'qlo', 'QL08p046745' => 'qlo', 'QL08p052606' => 'qlo', 'QL08p053414' => 'qlo', 'QL08p054868' => 'qlo', 'RcHm_v2.0_Chr1g0350251' => 'rch', 'RcHm_v2.0_Chr1g0360851' => 'rch', 'RcHm_v2.0_Chr1g0362791' => 'rch', 'RcHm_v2.0_Chr3g0466281' => 'rch', 'RcHm_v2.0_Chr7g0201481' => 'rch', 'Rhsim01G0148600' => 'rsi', 'Rhsim05G0194400' => 'rsi', 'Rhsim07G0000700' => 'rsi', 'Rhsim07G0000800' => 'rsi', 'Rhsim07G0027900' => 'rsi', 'Rhsim09G0149500' => 'rsi', 'RhsimUnG0186900' => 'rsi', 'Sabra01G0089900' => 'sbr', 'Sabra02G0114700' => 'sbr', 'Sabra02G0116300' => 'sbr', 'Sabra03G0080100' => 'sbr', 'Sabra08G0024300' => 'sbr', 'Sabra10G0174300' => 'sbr', 'Sabra14G0048900' => 'sbr', 'Sabra14G0076500' => 'sbr', 'SalBow5G2513' => 'sbo', 'Sc01g0002300' => 'sci', 'Sc01g0004450' => 'sci', 'Sc06g0001680' => 'sci', 'Sc23g0003580' => 'sci', 'Sed0000913' => 'sed', 'Sed0001655' => 'sed', 'Sed0007745' => 'sed', 'Sed0010951' => 'sed', 'Sed0017599' => 'sed', 'Sed0021405' => 'sed', 'Sed0022810' => 'sed', 'SEGI_07099' => 'sgi', 'SEGI_11931' => 'sgi', 'SEGI_13187' => 'sgi', 'SEGI_29958' => 'sgi', 'SEGI_36351' => 'sgi', 'SGA_v2.0_scaffold126G33770' => 'sas', 'SGA_v2.0_scaffold153G37003' => 'sas', 'SGA_v2.0_scaffold2G01359' => 'sas', 'SGA_v2.0_scaffold5G03064' => 'sas', 'SGA_v2.0_scaffold95G28903' => 'sas', 'SHI12701' => 'shi', 'SHI26410' => 'shi', 'SHI38997' => 'shi', 'SHI53759' => 'shi', 'SHI53886' => 'shi', 'SHI54714' => 'shi', 'SMO011G0041' => 'smo', 'SMO146G0251' => 'smo', 'SMO160G0004' => 'smo', 'SMO174G0057' => 'smo', 'SMO244G0089' => 'smo', 'SMO296G0011' => 'smo', 'Solyc01g091280.3' => 'sly', 'Solyc05g047610.3' => 'sly', 'Solyc05g047640.3' => 'sly', 'Solyc05g055630.3' => 'sly', 'Solyc10g018160.2' => 'sly', 'Solyc10g084820.2' => 'sly', 'Solyc10g086565.2' => 'sly', 'Sopen01g037030' => 'spe', 'Sopen05g027920' => 'spe', 'Sopen05g034070' => 'spe', 'Sopen10g007260' => 'spe', 'Sopen10g034260' => 'spe', 'Sopen10g035950' => 'spe', 'Sp3g07710' => 'spa', 'Sp4g27420' => 'spa', 'Sp5g02450' => 'spa', 'Sp6g01280' => 'spa', 'Sp6g38480' => 'spa', 'Sp7g20780' => 'spa', 'TAR374G1413' => 'tar', 'TAR623G1777' => 'tar', 'TAR629G2370' => 'tar', 'TAR633G1759' => 'tar', 'TAR636G3387' => 'tar', 'THA.LOC104802447' => 'tha', 'THA.LOC104813916' => 'tha', 'THA.LOC104816423' => 'tha', 'THA.LOC104817246' => 'tha', 'THA.LOC104825895' => 'tha', 'Thecc.01G335200' => 'tca', 'Thecc.01G377400' => 'tca', 'Thecc.03G262200' => 'tca', 'Thecc.05G036800' => 'tca', 'Thecc.10G080500' => 'tca', 'Thecc.10G080800' => 'tca', 'Thhalv10001560m.g' => 'esa', 'Thhalv10006120m.g' => 'esa', 'Thhalv10014375m.g' => 'esa', 'Thhalv10021264m.g' => 'esa', 'Thhalv10028856m.g' => 'esa', 'TPR.G1914' => 'tpr', 'TPR.G4757' => 'tpr', 'TPR.G5595' => 'tpr', 'TWI14G0952' => 'twi', 'TWI14G1307' => 'twi', 'TWI38G2143' => 'twi', 'TWI59G0826' => 'twi', 'TWI77G0527' => 'twi', 'TWI81G0150' => 'twi', 'unitig_21.g21018' => 'ugi', 'unitig_26.g9725' => 'ugi', 'unitig_744.g24653' => 'ugi', 'unitig_749.g13778' => 'ugi', 'unitig_899.g15035' => 'ugi', 'vmacro04296' => 'vma', 'vmacro04852' => 'vma', 'vmacro13404' => 'vma', 'vmacro20169' => 'vma', 'vmacro21014' => 'vma', 'VMungo0331G0237' => 'vmu', 'VMungo0331G0706' => 'vmu', 'VMungo0331G1361' => 'vmu', 'VMungo0331G1489' => 'vmu', 'VMungo0540G1037' => 'vmu', 'VMungo0720G2487' => 'vmu', 'VMungo0720G2721' => 'vmu', 'Zm00001eb086860' => 'zma', 'Zm00001eb104760' => 'zma', 'Zm00001eb148220' => 'zma', 'Zm00001eb259030' => 'zma', 'Zm00001eb289590' => 'zma', 'Zm00001eb420150' => 'zma' ), 'gf_id' => 'HOM05D000968', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000968' ), 'data_identifier' => 'HOM05D000968', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000968', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p31690' => 'bna', 'A03p36040' => 'bna', 'A03p53730' => 'bna', 'A04p01410' => 'bna', 'A05p05420' => 'bna', 'A05p39630' => 'bna', 'A05p39640' => 'bna', 'A09p00970' => 'bna', 'A09p53060' => 'bna', 'A10p31890' => 'bna', 'Aa31LG10G15040' => 'aar', 'Aa31LG1G21090' => 'aar', 'Aa31LG1G26900' => 'aar', 'Aa31LG3G1820' => 'aar', 'Aa31LG5G1100' => 'aar', 'Aa31LG6G4740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2265' => 'aag', 'Actinidia07998' => 'ach', 'Actinidia11266' => 'ach', 'Actinidia12682' => 'ach', 'Actinidia26479' => 'ach', 'Actinidia31406' => 'ach', 'Actinidia32437' => 'ach', 'Actinidia38862' => 'ach', 'Ah.05g174230' => 'amhyb', 'Ah.05g179070' => 'amhyb', 'Ah.05g179090' => 'amhyb', 'Ah.12g059950' => 'amhyb', 'AL3G20480' => 'aly', 'AL4G44520' => 'aly', 'AL5G43110' => 'aly', 'AL6G13890' => 'aly', 'AL6G52620' => 'aly', 'AL7G30830' => 'aly', 'Aqoxy1G00899' => 'aox', 'Aqoxy5G04333' => 'aox', 'Aqoxy7G00641' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3IZ0NN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4EF6AW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W9P8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79GA3M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C43NQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFCU6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G95YVJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCHK29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LU1UG8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX91RN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGB4B1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8DA0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9H7JI' => 'arhy', 'AT3G09320' => 'ath', 'AT3G60800' => 'ath', 'AT4G00840' => 'ath', 'AT4G22750' => 'ath', 'AT5G04270' => 'ath', 'ATR0090G003' => 'atr', 'ATR0559G349' => 'atr', 'ATR0680G261' => 'atr', 'ATR0810G048' => 'atr', 'Atru.chr12.831' => 'acertr', 'Atru.chr5.303' => 'acertr', 'Atru.chr5.748' => 'acertr', 'Atru.chr8.1999' => 'acertr', 'Atru.chr9.1436' => 'acertr', 'AUR62004211' => 'cqu', 'AUR62004548' => 'cqu', 'AUR62013637' => 'cqu', 'AUR62022662' => 'cqu', 'AUR62025777' => 'cqu', 'AUR62042386' => 'cqu', 'BcaB01g02310' => 'bca', 'BcaB01g06062' => 'bca', 'BcaB02g08975' => 'bca', 'BcaB02g08980' => 'bca', 'BcaC01g04228' => 'bca', 'BcaC01g06830' => 'bca', 'BcaC02g10186' => 'bca', 'BcaC02g12214' => 'bca', 'BcaC04g24101' => 'bca', 'BcaC05g29520' => 'bca', 'BcaC05g29661' => 'bca', 'BcaC06g32130' => 'bca', 'BcaC06g32131' => 'bca', 'BcaC07g40601' => 'bca', 'BcaC07g42641' => 'bca', 'BcaNung01038' => 'bca', 'BcaNung01676' => 'bca', 'BcaNung02480' => 'bca', 'BcaNung07376' => 'bca', 'BolC3t16146H' => 'bol', 'BolC3t16637H' => 'bol', 'BolC4t22257H' => 'bol', 'BolC4t24728H' => 'bol', 'BolC5t34517H' => 'bol', 'BolC7t45703H' => 'bol', 'BolC8t51166H' => 'bol', 'BolC9t53038H' => 'bol', 'BolC9t60000H' => 'bol', 'BraA01t01345Z' => 'bra', 'BraA01t01346Z' => 'bra', 'BraA01t01348Z' => 'bra', 'BraA03t12347Z' => 'bra', 'BraA03t12775Z' => 'bra', 'BraA03t14439Z' => 'bra', 'BraA04t15860Z' => 'bra', 'BraA05t19511Z' => 'bra', 'BraA05t22746Z' => 'bra', 'BraA09t35767Z' => 'bra', 'BraA09t40732Z' => 'bra', 'BraA10t45233Z' => 'bra', 'C03p38720' => 'bna', 'C03p43680' => 'bna', 'C04p06350' => 'bna', 'C04p31800' => 'bna', 'C05p58680' => 'bna', 'C07p52110' => 'bna', 'C08p35760' => 'bna', 'C09p01050' => 'bna', 'C09p72600' => 'bna', 'CAN.G106.2' => 'can', 'CAN.G1482.1' => 'can', 'CAN.G324.12' => 'can', 'CAN.G388.20' => 'can', 'CAN.G412.7' => 'can', 'CAN.G694.32' => 'can', 'CAN.G92.12' => 'can', 'CANSAT11G2353' => 'cansat', 'CANSAT21G1398' => 'cansat', 'CANSAT56G2456' => 'cansat', 'CANSAT56G3031' => 'cansat', 'CANSAT56G4539' => 'cansat', 'CARHR083680' => 'chi', 'CARHR171190' => 'chi', 'CARHR209010' => 'chi', 'CARHR229680' => 'chi', 'CARHR249490' => 'chi', 'Carub.0003s0844' => 'cru', 'Carub.0005s2755' => 'cru', 'Carub.0006s0322' => 'cru', 'Carub.0006s3586' => 'cru', 'Carub.0007s1855' => 'cru', 'Ca_07808_v3' => 'car', 'Ca_09535_v3' => 'car', 'Ca_10548_v3' => 'car', 'Ca_19913_v3' => 'car', 'Ca_19916_v3' => 'car', 'Ca_19975_v3' => 'car', 'CBR_g22876' => 'cbr', 'CBR_g22879' => 'cbr', 'CBR_g38491' => 'cbr', 'CBR_g54185' => 'cbr', 'CBR_g54190' => 'cbr', 'Cc02_g11020' => 'ccan', 'Cc02_g23920' => 'ccan', 'Cc02_g39860' => 'ccan', 'Cc02_g39870' => 'ccan', 'Cc03_g06760' => 'ccan', 'Cc06_g02450' => 'ccan', 'Cc09_g09450' => 'ccan', 'CDE02G1959' => 'cde', 'CDE04G0600' => 'cde', 'CDE07G1996' => 'cde', 'CDE07G2078' => 'cde', 'CDE11G0611' => 'cde', 'Cfa001683' => 'cfa', 'Cfa001734' => 'cfa', 'Cfa001737' => 'cfa', 'Cfa003751' => 'cfa', 'Cfa012019' => 'cfa', 'Cfa017353' => 'cfa', 'Cfa017732' => 'cfa', 'Cfa022464' => 'cfa', 'Ciclev10012400m.g' => 'ccl', 'Ciclev10021242m.g' => 'ccl', 'Ciclev10021302m.g' => 'ccl', 'Ciclev10021463m.g' => 'ccl', 'Ciclev10032359m.g' => 'ccl', 'CiPaw.01G081000' => 'cil', 'CiPaw.01G262500' => 'cil', 'CiPaw.01G269800' => 'cil', 'CiPaw.02G168400' => 'cil', 'CiPaw.05G119500' => 'cil', 'CiPaw.11G147300' => 'cil', 'ClCG01G003630' => 'cla', 'ClCG05G000510' => 'cla', 'ClCG05G002300' => 'cla', 'ClCG08G007650' => 'cla', 'ClCG10G021250' => 'cla', 'COL.COLO4_06218' => 'col', 'COL.COLO4_12538' => 'col', 'COL.COLO4_14775' => 'col', 'COL.COLO4_23875' => 'col', 'Cpa.g.sc141.16' => 'cpa', 'Cpa.g.sc169.16' => 'cpa', 'Cpa.g.sc244.4' => 'cpa', 'Cpa.g.sc244.5' => 'cpa', 'Cpa.g.sc29.87' => 'cpa', 'Cpa.g.sc53.115' => 'cpa', 'Cre03.g207502' => 'cre', 'Cre06.g277000' => 'cre', 'Cre09.g394050' => 'cre', 'CsaV3_3G007680' => 'csa', 'CsaV3_3G009710' => 'csa', 'CsaV3_3G034790' => 'csa', 'CsaV3_5G003750' => 'csa', 'CsaV3_6G036620' => 'csa', 'CSS0002288' => 'camsi', 'CSS0011250' => 'camsi', 'CSS0021619' => 'camsi', 'CSS0046701' => 'camsi', 'DCAR_006420' => 'dca', 'DCAR_006865' => 'dca', 'DCAR_008558' => 'dca', 'DCAR_028754' => 'dca', 'DCAR_028755' => 'dca', 'Dinv31218' => 'din', 'Dinv32371' => 'din', 'Dinv34250' => 'din', 'Dinv37156' => 'din', 'Dinv43704' => 'din', 'Duzib093G1811' => 'dzi', 'Duzib106G1622' => 'dzi', 'Duzib114G0504' => 'dzi', 'Duzib128G0338' => 'dzi', 'Duzib128G1577' => 'dzi', 'Duzib133G0104' => 'dzi', 'Duzib133G1080' => 'dzi', 'Duzib138G0324' => 'dzi', 'Duzib138G0394' => 'dzi', 'Duzib205G0122' => 'dzi', 'Duzib268G1020' => 'dzi', 'Duzib268G1359' => 'dzi', 'ECA232G3929' => 'eca', 'ECA236G2210' => 'eca', 'ECA236G2287' => 'eca', 'ECA240G4568' => 'eca', 'ECA247G0894' => 'eca', 'EL10Ac1g00200' => 'bvu', 'EL10Ac1g00886' => 'bvu', 'EL10As1g23091' => 'bvu', 'EL10As1g23092' => 'bvu', 'Eucgr.A01284' => 'egr', 'Eucgr.A01285' => 'egr', 'Eucgr.D02456' => 'egr', 'Eucgr.E00018' => 'egr', 'Eucgr.E01439' => 'egr', 'Eucgr.G02859' => 'egr', 'FAN01G0168' => 'fan', 'FAN01G0453' => 'fan', 'FAN01G2761' => 'fan', 'FAN02G1239' => 'fan', 'FAN03G0645' => 'fan', 'FAN03G2707' => 'fan', 'FAN03G2978' => 'fan', 'FAN04G0227' => 'fan', 'FAN06G0091' => 'fan', 'FAN06G1418' => 'fan', 'FAN06G1512' => 'fan', 'FAN06G1986' => 'fan', 'FAN06G2905' => 'fan', 'FAN06G4325' => 'fan', 'FAN08G0033' => 'fan', 'FAN09G0642' => 'fan', 'FAN10G1763' => 'fan', 'FAN10G2026' => 'fan', 'FAN10G2513' => 'fan', 'FAN10G3402' => 'fan', 'FAN10G3564' => 'fan', 'FAN10G3987' => 'fan', 'FAN13G1490' => 'fan', 'FAN14G5857' => 'fan', 'FAN18G1188' => 'fan', 'FvH4_5g00750' => 'fve', 'FvH4_6g13410' => 'fve', 'FvH4_7g11740' => 'fve', 'FvH4_7g17410' => 'fve', 'FvH4_7g18860' => 'fve', 'Glyma.01G099100' => 'gma', 'Glyma.01G142300' => 'gma', 'Glyma.03G025500' => 'gma', 'Glyma.03G069700' => 'gma', 'Glyma.03G260000' => 'gma', 'Glyma.09G269800' => 'gma', 'Glyma.10G208700' => 'gma', 'Glyma.18G220400' => 'gma', 'Glyma.20G182000' => 'gma', 'Gohir.A01G221726' => 'ghi', 'Gohir.A07G134600' => 'ghi', 'Gohir.A07G146000' => 'ghi', 'Gohir.A08G173900' => 'ghi', 'Gohir.A09G194900' => 'ghi', 'Gohir.A10G204100' => 'ghi', 'Gohir.A11G080600' => 'ghi', 'Gohir.A11G327500' => 'ghi', 'Gohir.A12G101800' => 'ghi', 'Gohir.D01G211200' => 'ghi', 'Gohir.D07G139200' => 'ghi', 'Gohir.D07G152100' => 'ghi', 'Gohir.D08G192600' => 'ghi', 'Gohir.D09G189200' => 'ghi', 'Gohir.D10G212000' => 'ghi', 'Gohir.D11G085200' => 'ghi', 'Gohir.D11G346400' => 'ghi', 'Gohir.D12G104800' => 'ghi', 'Gorai.001G151300' => 'gra', 'Gorai.001G174100' => 'gra', 'Gorai.002G257000' => 'gra', 'Gorai.004G202600' => 'gra', 'Gorai.007G090900' => 'gra', 'Gorai.007G376700' => 'gra', 'Gorai.008G114100' => 'gra', 'Gorai.011G237900' => 'gra', 'GSVIVG01005450001' => 'vvi', 'GSVIVG01016232001' => 'vvi', 'GSVIVG01026157001' => 'vvi', 'GSVIVG01027419001' => 'vvi', 'GSVIVG01027631001' => 'vvi', 'GSVIVG01034143001' => 'vvi', 'HanXRQChr03g0093921' => 'han', 'HanXRQChr04g0120001' => 'han', 'HanXRQChr04g0122561' => 'han', 'HanXRQChr09g0246851' => 'han', 'HanXRQChr10g0293311' => 'han', 'HanXRQChr13g0425231' => 'han', 'HanXRQChr16g0532571' => 'han', 'Haze_09050' => 'cav', 'Haze_15715' => 'cav', 'Haze_15716' => 'cav', 'Haze_16803' => 'cav', 'Haze_16850' => 'cav', 'Hma1.2p1_0301F.1_g118655' => 'hma', 'Hma1.2p1_0309F.1_g120590' => 'hma', 'Hma1.2p1_0936F.1_g238900' => 'hma', 'Hma1.2p1_3552F.1_g336740' => 'hma', 'HPP92_003520' => 'vpl', 'HPP92_006628' => 'vpl', 'HPP92_006645' => 'vpl', 'HPP92_014669' => 'vpl', 'HPP92_015077' => 'vpl', 'Hund16742' => 'sun', 'Hund17022' => 'sun', 'Lalb_Chr02g0152131' => 'lal', 'Lalb_Chr05g0225371' => 'lal', 'Lalb_Chr07g0189841' => 'lal', 'Lalb_Chr07g0192961' => 'lal', 'Lalb_Chr12g0208221' => 'lal', 'Lalb_Chr13g0291211' => 'lal', 'Lalb_Chr13g0291781' => 'lal', 'Lalb_Chr18g0044651' => 'lal', 'Lalb_Chr21g0313731' => 'lal', 'Lj1g0022533' => 'lja', 'Lj2A18T50' => 'lonja', 'Lj2A92G93' => 'lonja', 'Lj3A965T73' => 'lonja', 'Lj3g0000673' => 'lja', 'Lj3g0002666' => 'lja', 'Lj4g0016985' => 'lja', 'Lj5g0003625' => 'lja', 'Lj7A529G36' => 'lonja', 'Lj9A569T49' => 'lonja', 'Lj9A604T63' => 'lonja', 'Lsat_1_v5_gn_3_132060' => 'lsa', 'Lsat_1_v5_gn_4_68941' => 'lsa', 'Lsat_1_v5_gn_5_95580' => 'lsa', 'Lsat_1_v5_gn_7_161' => 'lsa', 'Lsat_1_v5_gn_7_7041' => 'lsa', 'Lsat_1_v5_gn_9_33481' => 'lsa', 'Lsat_1_v5_gn_9_68260' => 'lsa', 'Manes.01G073100' => 'mes', 'Manes.01G266300' => 'mes', 'Manes.02G033300' => 'mes', 'Manes.05G017900' => 'mes', 'Manes.05G046100' => 'mes', 'Manes.08G080900' => 'mes', 'Manes.10G049400' => 'mes', 'Mapoly0009s0186' => 'mpo', 'Mapoly0036s0118' => 'mpo', 'Mapoly0101s0046' => 'mpo', 'MBI04_g30218_MAGBIO' => 'mbi', 'MBI04_g35564_MAGBIO' => 'mbi', 'MBI12_g34011_MAGBIO' => 'mbi', 'MBI14_g04655_MAGBIO' => 'mbi', 'MCO07G653' => 'mco', 'MCO10G173' => 'mco', 'MD01G1087100' => 'mdo', 'MD01G1104200' => 'mdo', 'MD02G1205100' => 'mdo', 'MD04G1079200' => 'mdo', 'MD04G1131400' => 'mdo', 'MD07G1121600' => 'mdo', 'MD07G1157300' => 'mdo', 'MD07G1171000' => 'mdo', 'MD12G1144500' => 'mdo', 'Medtr1g094610' => 'mtr', 'Medtr4g021795' => 'mtr', 'Medtr4g023760' => 'mtr', 'Medtr7g118050' => 'mtr', 'MELO3C005582.2' => 'cme', 'MELO3C005989.2' => 'cme', 'MELO3C006192.2' => 'cme', 'MELO3C009248.2' => 'cme', 'MELO3C019817.2' => 'cme', 'Migut.B01625' => 'egut', 'Migut.B01915' => 'egut', 'Migut.F01721' => 'egut', 'Migut.J00314' => 'egut', 'MSTRG.20742' => 'ama', 'MSTRG.8134' => 'ama', 'Nitab4.5_0000096g0010' => 'nta', 'Nitab4.5_0000202g0030' => 'nta', 'Nitab4.5_0000216g0370' => 'nta', 'Nitab4.5_0000457g0230' => 'nta', 'Nitab4.5_0001702g0170' => 'nta', 'Nitab4.5_0003607g0010' => 'nta', 'Nitab4.5_0004917g0020' => 'nta', 'Nitab4.5_0007059g0010' => 'nta', 'Nitab4.5_0007184g0010' => 'nta', 'Nitab4.5_0007346g0020' => 'nta', 'Nn1g00410' => 'nnu', 'Nn1g01252' => 'nnu', 'Nn2g11168' => 'nnu', 'Nn2g13403' => 'nnu', 'Nn2g13760' => 'nnu', 'Nn4g26380' => 'nnu', 'Oeu000806.2' => 'oeu', 'Oeu005788.1' => 'oeu', 'Oeu006900.3' => 'oeu', 'Oeu007797.1' => 'oeu', 'Oeu011932.1' => 'oeu', 'Oeu022739.1' => 'oeu', 'Oeu037918.1' => 'oeu', 'Oeu055490.2' => 'oeu', 'Os01g0844400' => 'osa', 'Os02g0819100' => 'osa', 'Os03g0804300' => 'osa', 'Os05g0458000' => 'osa', 'Os07g0467800' => 'osa', 'Os12g0602200' => 'osa', 'Peaxi162Scf00013g03444' => 'pax', 'Peaxi162Scf00094g01120' => 'pax', 'Peaxi162Scf00191g01211' => 'pax', 'Peaxi162Scf00238g01110' => 'pax', 'Peaxi162Scf00330g00719' => 'pax', 'Peaxi162Scf00627g00018' => 'pax', 'PGR031G2686' => 'pgr', 'PGR042G0809' => 'pgr', 'PGR142G0193' => 'pgr', 'PGSC0003DMG400011066' => 'stu', 'PGSC0003DMG400012041' => 'stu', 'PGSC0003DMG400013678' => 'stu', 'PGSC0003DMG400023477' => 'stu', 'PGSC0003DMG400025956' => 'stu', 'PGSC0003DMG401019151' => 'stu', 'Phvul.006G116400' => 'pvu', 'Phvul.007G097300' => 'pvu', 'Phvul.010G015000' => 'pvu', 'Phvul.010G083900' => 'pvu', 'Potri.001G117100' => 'ptr', 'Potri.002G147300' => 'ptr', 'Potri.003G115600' => 'ptr', 'Potri.006G087400' => 'ptr', 'Potri.010G226100' => 'ptr', 'Potri.014G069200' => 'ptr', 'Potri.014G104000' => 'ptr', 'Potri.016G100200' => 'ptr', 'Pp3c10_20450' => 'ppa', 'Pp3c1_42400' => 'ppa', 'Pp3c3_24390' => 'ppa', 'Pp3c3_2860' => 'ppa', 'PRCOL_00003193' => 'pco', 'Prupe.2G144500' => 'ppe', 'Prupe.2G195700' => 'ppe', 'Prupe.2G209800' => 'ppe', 'Prupe.5G080000' => 'ppe', 'Prupe.6G257900' => 'ppe', 'Psat3g001160' => 'psa', 'Psat6g181880' => 'psa', 'Psat7g233720' => 'psa', 'PSO063G7587' => 'pso', 'PSO339G2145' => 'pso', 'PSO339G3369' => 'pso', 'PSO478G2747' => 'pso', 'PSO513G0140' => 'pso', 'PSO782G1614' => 'pso', 'PSO782G4889' => 'pso', 'PSO782G5485' => 'pso', 'PSO801G0241' => 'pso', 'QL07p048854' => 'qlo', 'QL08p046745' => 'qlo', 'QL08p052606' => 'qlo', 'QL08p053414' => 'qlo', 'QL08p054868' => 'qlo', 'RcHm_v2.0_Chr1g0350251' => 'rch', 'RcHm_v2.0_Chr1g0360851' => 'rch', 'RcHm_v2.0_Chr1g0362791' => 'rch', 'RcHm_v2.0_Chr3g0466281' => 'rch', 'RcHm_v2.0_Chr7g0201481' => 'rch', 'Rhsim01G0148600' => 'rsi', 'Rhsim05G0194400' => 'rsi', 'Rhsim07G0000700' => 'rsi', 'Rhsim07G0000800' => 'rsi', 'Rhsim07G0027900' => 'rsi', 'Rhsim09G0149500' => 'rsi', 'RhsimUnG0186900' => 'rsi', 'Sabra01G0089900' => 'sbr', 'Sabra02G0114700' => 'sbr', 'Sabra02G0116300' => 'sbr', 'Sabra03G0080100' => 'sbr', 'Sabra08G0024300' => 'sbr', 'Sabra10G0174300' => 'sbr', 'Sabra14G0048900' => 'sbr', 'Sabra14G0076500' => 'sbr', 'SalBow5G2513' => 'sbo', 'Sc01g0002300' => 'sci', 'Sc01g0004450' => 'sci', 'Sc06g0001680' => 'sci', 'Sc23g0003580' => 'sci', 'Sed0000913' => 'sed', 'Sed0001655' => 'sed', 'Sed0007745' => 'sed', 'Sed0010951' => 'sed', 'Sed0017599' => 'sed', 'Sed0021405' => 'sed', 'Sed0022810' => 'sed', 'SEGI_07099' => 'sgi', 'SEGI_11931' => 'sgi', 'SEGI_13187' => 'sgi', 'SEGI_29958' => 'sgi', 'SEGI_36351' => 'sgi', 'SGA_v2.0_scaffold126G33770' => 'sas', 'SGA_v2.0_scaffold153G37003' => 'sas', 'SGA_v2.0_scaffold2G01359' => 'sas', 'SGA_v2.0_scaffold5G03064' => 'sas', 'SGA_v2.0_scaffold95G28903' => 'sas', 'SHI12701' => 'shi', 'SHI26410' => 'shi', 'SHI38997' => 'shi', 'SHI53759' => 'shi', 'SHI53886' => 'shi', 'SHI54714' => 'shi', 'SMO011G0041' => 'smo', 'SMO146G0251' => 'smo', 'SMO160G0004' => 'smo', 'SMO174G0057' => 'smo', 'SMO244G0089' => 'smo', 'SMO296G0011' => 'smo', 'Solyc01g091280.3' => 'sly', 'Solyc05g047610.3' => 'sly', 'Solyc05g047640.3' => 'sly', 'Solyc05g055630.3' => 'sly', 'Solyc10g018160.2' => 'sly', 'Solyc10g084820.2' => 'sly', 'Solyc10g086565.2' => 'sly', 'Sopen01g037030' => 'spe', 'Sopen05g027920' => 'spe', 'Sopen05g034070' => 'spe', 'Sopen10g007260' => 'spe', 'Sopen10g034260' => 'spe', 'Sopen10g035950' => 'spe', 'Sp3g07710' => 'spa', 'Sp4g27420' => 'spa', 'Sp5g02450' => 'spa', 'Sp6g01280' => 'spa', 'Sp6g38480' => 'spa', 'Sp7g20780' => 'spa', 'TAR374G1413' => 'tar', 'TAR623G1777' => 'tar', 'TAR629G2370' => 'tar', 'TAR633G1759' => 'tar', 'TAR636G3387' => 'tar', 'THA.LOC104802447' => 'tha', 'THA.LOC104813916' => 'tha', 'THA.LOC104816423' => 'tha', 'THA.LOC104817246' => 'tha', 'THA.LOC104825895' => 'tha', 'Thecc.01G335200' => 'tca', 'Thecc.01G377400' => 'tca', 'Thecc.03G262200' => 'tca', 'Thecc.05G036800' => 'tca', 'Thecc.10G080500' => 'tca', 'Thecc.10G080800' => 'tca', 'Thhalv10001560m.g' => 'esa', 'Thhalv10006120m.g' => 'esa', 'Thhalv10014375m.g' => 'esa', 'Thhalv10021264m.g' => 'esa', 'Thhalv10028856m.g' => 'esa', 'TPR.G1914' => 'tpr', 'TPR.G4757' => 'tpr', 'TPR.G5595' => 'tpr', 'TWI14G0952' => 'twi', 'TWI14G1307' => 'twi', 'TWI38G2143' => 'twi', 'TWI59G0826' => 'twi', 'TWI77G0527' => 'twi', 'TWI81G0150' => 'twi', 'unitig_21.g21018' => 'ugi', 'unitig_26.g9725' => 'ugi', 'unitig_744.g24653' => 'ugi', 'unitig_749.g13778' => 'ugi', 'unitig_899.g15035' => 'ugi', 'vmacro04296' => 'vma', 'vmacro04852' => 'vma', 'vmacro13404' => 'vma', 'vmacro20169' => 'vma', 'vmacro21014' => 'vma', 'VMungo0331G0237' => 'vmu', 'VMungo0331G0706' => 'vmu', 'VMungo0331G1361' => 'vmu', 'VMungo0331G1489' => 'vmu', 'VMungo0540G1037' => 'vmu', 'VMungo0720G2487' => 'vmu', 'VMungo0720G2721' => 'vmu', 'Zm00001eb086860' => 'zma', 'Zm00001eb104760' => 'zma', 'Zm00001eb148220' => 'zma', 'Zm00001eb259030' => 'zma', 'Zm00001eb289590' => 'zma', 'Zm00001eb420150' => 'zma' ) $gf_id = 'HOM05D000968' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000968' ) $data_identifier = 'HOM05D000968' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 19, 'bol' => (int) 9, 'bra' => (int) 12, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 5, 'ccan' => (int) 7, 'cde' => (int) 5, 'cfa' => (int) 8, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 4, 'dca' => (int) 5, 'din' => (int) 5, 'dzi' => (int) 12, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 25, 'fve' => (int) 5, 'gma' => (int) 9, 'ghi' => (int) 18, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 7, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 5, 'sun' => (int) 2, 'lal' => (int) 9, 'lja' => (int) 5, 'lonja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 9, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 2, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 3, 'stu' => (int) 6, 'pvu' => (int) 4, 'ptr' => (int) 8, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 3, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 1, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 5, 'sas' => (int) 5, 'shi' => (int) 6, 'smo' => (int) 6, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 3, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420150' $species_info = array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ) $local_species = 'aag' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000968', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p31690' => 'bna', 'A03p36040' => 'bna', 'A03p53730' => 'bna', 'A04p01410' => 'bna', 'A05p05420' => 'bna', 'A05p39630' => 'bna', 'A05p39640' => 'bna', 'A09p00970' => 'bna', 'A09p53060' => 'bna', 'A10p31890' => 'bna', 'Aa31LG10G15040' => 'aar', 'Aa31LG1G21090' => 'aar', 'Aa31LG1G26900' => 'aar', 'Aa31LG3G1820' => 'aar', 'Aa31LG5G1100' => 'aar', 'Aa31LG6G4740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2265' => 'aag', 'Actinidia07998' => 'ach', 'Actinidia11266' => 'ach', 'Actinidia12682' => 'ach', 'Actinidia26479' => 'ach', 'Actinidia31406' => 'ach', 'Actinidia32437' => 'ach', 'Actinidia38862' => 'ach', 'Ah.05g174230' => 'amhyb', 'Ah.05g179070' => 'amhyb', 'Ah.05g179090' => 'amhyb', 'Ah.12g059950' => 'amhyb', 'AL3G20480' => 'aly', 'AL4G44520' => 'aly', 'AL5G43110' => 'aly', 'AL6G13890' => 'aly', 'AL6G52620' => 'aly', 'AL7G30830' => 'aly', 'Aqoxy1G00899' => 'aox', 'Aqoxy5G04333' => 'aox', 'Aqoxy7G00641' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3IZ0NN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4EF6AW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W9P8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79GA3M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C43NQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFCU6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G95YVJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCHK29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LU1UG8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX91RN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGB4B1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8DA0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9H7JI' => 'arhy', 'AT3G09320' => 'ath', 'AT3G60800' => 'ath', 'AT4G00840' => 'ath', 'AT4G22750' => 'ath', 'AT5G04270' => 'ath', 'ATR0090G003' => 'atr', 'ATR0559G349' => 'atr', 'ATR0680G261' => 'atr', 'ATR0810G048' => 'atr', 'Atru.chr12.831' => 'acertr', 'Atru.chr5.303' => 'acertr', 'Atru.chr5.748' => 'acertr', 'Atru.chr8.1999' => 'acertr', 'Atru.chr9.1436' => 'acertr', 'AUR62004211' => 'cqu', 'AUR62004548' => 'cqu', 'AUR62013637' => 'cqu', 'AUR62022662' => 'cqu', 'AUR62025777' => 'cqu', 'AUR62042386' => 'cqu', 'BcaB01g02310' => 'bca', 'BcaB01g06062' => 'bca', 'BcaB02g08975' => 'bca', 'BcaB02g08980' => 'bca', 'BcaC01g04228' => 'bca', 'BcaC01g06830' => 'bca', 'BcaC02g10186' => 'bca', 'BcaC02g12214' => 'bca', 'BcaC04g24101' => 'bca', 'BcaC05g29520' => 'bca', 'BcaC05g29661' => 'bca', 'BcaC06g32130' => 'bca', 'BcaC06g32131' => 'bca', 'BcaC07g40601' => 'bca', 'BcaC07g42641' => 'bca', 'BcaNung01038' => 'bca', 'BcaNung01676' => 'bca', 'BcaNung02480' => 'bca', 'BcaNung07376' => 'bca', 'BolC3t16146H' => 'bol', 'BolC3t16637H' => 'bol', 'BolC4t22257H' => 'bol', 'BolC4t24728H' => 'bol', 'BolC5t34517H' => 'bol', 'BolC7t45703H' => 'bol', 'BolC8t51166H' => 'bol', 'BolC9t53038H' => 'bol', 'BolC9t60000H' => 'bol', 'BraA01t01345Z' => 'bra', 'BraA01t01346Z' => 'bra', 'BraA01t01348Z' => 'bra', 'BraA03t12347Z' => 'bra', 'BraA03t12775Z' => 'bra', 'BraA03t14439Z' => 'bra', 'BraA04t15860Z' => 'bra', 'BraA05t19511Z' => 'bra', 'BraA05t22746Z' => 'bra', 'BraA09t35767Z' => 'bra', 'BraA09t40732Z' => 'bra', 'BraA10t45233Z' => 'bra', 'C03p38720' => 'bna', 'C03p43680' => 'bna', 'C04p06350' => 'bna', 'C04p31800' => 'bna', 'C05p58680' => 'bna', 'C07p52110' => 'bna', 'C08p35760' => 'bna', 'C09p01050' => 'bna', 'C09p72600' => 'bna', 'CAN.G106.2' => 'can', 'CAN.G1482.1' => 'can', 'CAN.G324.12' => 'can', 'CAN.G388.20' => 'can', 'CAN.G412.7' => 'can', 'CAN.G694.32' => 'can', 'CAN.G92.12' => 'can', 'CANSAT11G2353' => 'cansat', 'CANSAT21G1398' => 'cansat', 'CANSAT56G2456' => 'cansat', 'CANSAT56G3031' => 'cansat', 'CANSAT56G4539' => 'cansat', 'CARHR083680' => 'chi', 'CARHR171190' => 'chi', 'CARHR209010' => 'chi', 'CARHR229680' => 'chi', 'CARHR249490' => 'chi', 'Carub.0003s0844' => 'cru', 'Carub.0005s2755' => 'cru', 'Carub.0006s0322' => 'cru', 'Carub.0006s3586' => 'cru', 'Carub.0007s1855' => 'cru', 'Ca_07808_v3' => 'car', 'Ca_09535_v3' => 'car', 'Ca_10548_v3' => 'car', 'Ca_19913_v3' => 'car', 'Ca_19916_v3' => 'car', 'Ca_19975_v3' => 'car', 'CBR_g22876' => 'cbr', 'CBR_g22879' => 'cbr', 'CBR_g38491' => 'cbr', 'CBR_g54185' => 'cbr', 'CBR_g54190' => 'cbr', 'Cc02_g11020' => 'ccan', 'Cc02_g23920' => 'ccan', 'Cc02_g39860' => 'ccan', 'Cc02_g39870' => 'ccan', 'Cc03_g06760' => 'ccan', 'Cc06_g02450' => 'ccan', 'Cc09_g09450' => 'ccan', 'CDE02G1959' => 'cde', 'CDE04G0600' => 'cde', 'CDE07G1996' => 'cde', 'CDE07G2078' => 'cde', 'CDE11G0611' => 'cde', 'Cfa001683' => 'cfa', 'Cfa001734' => 'cfa', 'Cfa001737' => 'cfa', 'Cfa003751' => 'cfa', 'Cfa012019' => 'cfa', 'Cfa017353' => 'cfa', 'Cfa017732' => 'cfa', 'Cfa022464' => 'cfa', 'Ciclev10012400m.g' => 'ccl', 'Ciclev10021242m.g' => 'ccl', 'Ciclev10021302m.g' => 'ccl', 'Ciclev10021463m.g' => 'ccl', 'Ciclev10032359m.g' => 'ccl', 'CiPaw.01G081000' => 'cil', 'CiPaw.01G262500' => 'cil', 'CiPaw.01G269800' => 'cil', 'CiPaw.02G168400' => 'cil', 'CiPaw.05G119500' => 'cil', 'CiPaw.11G147300' => 'cil', 'ClCG01G003630' => 'cla', 'ClCG05G000510' => 'cla', 'ClCG05G002300' => 'cla', 'ClCG08G007650' => 'cla', 'ClCG10G021250' => 'cla', 'COL.COLO4_06218' => 'col', 'COL.COLO4_12538' => 'col', 'COL.COLO4_14775' => 'col', 'COL.COLO4_23875' => 'col', 'Cpa.g.sc141.16' => 'cpa', 'Cpa.g.sc169.16' => 'cpa', 'Cpa.g.sc244.4' => 'cpa', 'Cpa.g.sc244.5' => 'cpa', 'Cpa.g.sc29.87' => 'cpa', 'Cpa.g.sc53.115' => 'cpa', 'Cre03.g207502' => 'cre', 'Cre06.g277000' => 'cre', 'Cre09.g394050' => 'cre', 'CsaV3_3G007680' => 'csa', 'CsaV3_3G009710' => 'csa', 'CsaV3_3G034790' => 'csa', 'CsaV3_5G003750' => 'csa', 'CsaV3_6G036620' => 'csa', 'CSS0002288' => 'camsi', 'CSS0011250' => 'camsi', 'CSS0021619' => 'camsi', 'CSS0046701' => 'camsi', 'DCAR_006420' => 'dca', 'DCAR_006865' => 'dca', 'DCAR_008558' => 'dca', 'DCAR_028754' => 'dca', 'DCAR_028755' => 'dca', 'Dinv31218' => 'din', 'Dinv32371' => 'din', 'Dinv34250' => 'din', 'Dinv37156' => 'din', 'Dinv43704' => 'din', 'Duzib093G1811' => 'dzi', 'Duzib106G1622' => 'dzi', 'Duzib114G0504' => 'dzi', 'Duzib128G0338' => 'dzi', 'Duzib128G1577' => 'dzi', 'Duzib133G0104' => 'dzi', 'Duzib133G1080' => 'dzi', 'Duzib138G0324' => 'dzi', 'Duzib138G0394' => 'dzi', 'Duzib205G0122' => 'dzi', 'Duzib268G1020' => 'dzi', 'Duzib268G1359' => 'dzi', 'ECA232G3929' => 'eca', 'ECA236G2210' => 'eca', 'ECA236G2287' => 'eca', 'ECA240G4568' => 'eca', 'ECA247G0894' => 'eca', 'EL10Ac1g00200' => 'bvu', 'EL10Ac1g00886' => 'bvu', 'EL10As1g23091' => 'bvu', 'EL10As1g23092' => 'bvu', 'Eucgr.A01284' => 'egr', 'Eucgr.A01285' => 'egr', 'Eucgr.D02456' => 'egr', 'Eucgr.E00018' => 'egr', 'Eucgr.E01439' => 'egr', 'Eucgr.G02859' => 'egr', 'FAN01G0168' => 'fan', 'FAN01G0453' => 'fan', 'FAN01G2761' => 'fan', 'FAN02G1239' => 'fan', 'FAN03G0645' => 'fan', 'FAN03G2707' => 'fan', 'FAN03G2978' => 'fan', 'FAN04G0227' => 'fan', 'FAN06G0091' => 'fan', 'FAN06G1418' => 'fan', 'FAN06G1512' => 'fan', 'FAN06G1986' => 'fan', 'FAN06G2905' => 'fan', 'FAN06G4325' => 'fan', 'FAN08G0033' => 'fan', 'FAN09G0642' => 'fan', 'FAN10G1763' => 'fan', 'FAN10G2026' => 'fan', 'FAN10G2513' => 'fan', 'FAN10G3402' => 'fan', 'FAN10G3564' => 'fan', 'FAN10G3987' => 'fan', 'FAN13G1490' => 'fan', 'FAN14G5857' => 'fan', 'FAN18G1188' => 'fan', 'FvH4_5g00750' => 'fve', 'FvH4_6g13410' => 'fve', 'FvH4_7g11740' => 'fve', 'FvH4_7g17410' => 'fve', 'FvH4_7g18860' => 'fve', 'Glyma.01G099100' => 'gma', 'Glyma.01G142300' => 'gma', 'Glyma.03G025500' => 'gma', 'Glyma.03G069700' => 'gma', 'Glyma.03G260000' => 'gma', 'Glyma.09G269800' => 'gma', 'Glyma.10G208700' => 'gma', 'Glyma.18G220400' => 'gma', 'Glyma.20G182000' => 'gma', 'Gohir.A01G221726' => 'ghi', 'Gohir.A07G134600' => 'ghi', 'Gohir.A07G146000' => 'ghi', 'Gohir.A08G173900' => 'ghi', 'Gohir.A09G194900' => 'ghi', 'Gohir.A10G204100' => 'ghi', 'Gohir.A11G080600' => 'ghi', 'Gohir.A11G327500' => 'ghi', 'Gohir.A12G101800' => 'ghi', 'Gohir.D01G211200' => 'ghi', 'Gohir.D07G139200' => 'ghi', 'Gohir.D07G152100' => 'ghi', 'Gohir.D08G192600' => 'ghi', 'Gohir.D09G189200' => 'ghi', 'Gohir.D10G212000' => 'ghi', 'Gohir.D11G085200' => 'ghi', 'Gohir.D11G346400' => 'ghi', 'Gohir.D12G104800' => 'ghi', 'Gorai.001G151300' => 'gra', 'Gorai.001G174100' => 'gra', 'Gorai.002G257000' => 'gra', 'Gorai.004G202600' => 'gra', 'Gorai.007G090900' => 'gra', 'Gorai.007G376700' => 'gra', 'Gorai.008G114100' => 'gra', 'Gorai.011G237900' => 'gra', 'GSVIVG01005450001' => 'vvi', 'GSVIVG01016232001' => 'vvi', 'GSVIVG01026157001' => 'vvi', 'GSVIVG01027419001' => 'vvi', 'GSVIVG01027631001' => 'vvi', 'GSVIVG01034143001' => 'vvi', 'HanXRQChr03g0093921' => 'han', 'HanXRQChr04g0120001' => 'han', 'HanXRQChr04g0122561' => 'han', 'HanXRQChr09g0246851' => 'han', 'HanXRQChr10g0293311' => 'han', 'HanXRQChr13g0425231' => 'han', 'HanXRQChr16g0532571' => 'han', 'Haze_09050' => 'cav', 'Haze_15715' => 'cav', 'Haze_15716' => 'cav', 'Haze_16803' => 'cav', 'Haze_16850' => 'cav', 'Hma1.2p1_0301F.1_g118655' => 'hma', 'Hma1.2p1_0309F.1_g120590' => 'hma', 'Hma1.2p1_0936F.1_g238900' => 'hma', 'Hma1.2p1_3552F.1_g336740' => 'hma', 'HPP92_003520' => 'vpl', 'HPP92_006628' => 'vpl', 'HPP92_006645' => 'vpl', 'HPP92_014669' => 'vpl', 'HPP92_015077' => 'vpl', 'Hund16742' => 'sun', 'Hund17022' => 'sun', 'Lalb_Chr02g0152131' => 'lal', 'Lalb_Chr05g0225371' => 'lal', 'Lalb_Chr07g0189841' => 'lal', 'Lalb_Chr07g0192961' => 'lal', 'Lalb_Chr12g0208221' => 'lal', 'Lalb_Chr13g0291211' => 'lal', 'Lalb_Chr13g0291781' => 'lal', 'Lalb_Chr18g0044651' => 'lal', 'Lalb_Chr21g0313731' => 'lal', 'Lj1g0022533' => 'lja', 'Lj2A18T50' => 'lonja', 'Lj2A92G93' => 'lonja', 'Lj3A965T73' => 'lonja', 'Lj3g0000673' => 'lja', 'Lj3g0002666' => 'lja', 'Lj4g0016985' => 'lja', 'Lj5g0003625' => 'lja', 'Lj7A529G36' => 'lonja', 'Lj9A569T49' => 'lonja', 'Lj9A604T63' => 'lonja', 'Lsat_1_v5_gn_3_132060' => 'lsa', 'Lsat_1_v5_gn_4_68941' => 'lsa', 'Lsat_1_v5_gn_5_95580' => 'lsa', 'Lsat_1_v5_gn_7_161' => 'lsa', 'Lsat_1_v5_gn_7_7041' => 'lsa', 'Lsat_1_v5_gn_9_33481' => 'lsa', 'Lsat_1_v5_gn_9_68260' => 'lsa', 'Manes.01G073100' => 'mes', 'Manes.01G266300' => 'mes', 'Manes.02G033300' => 'mes', 'Manes.05G017900' => 'mes', 'Manes.05G046100' => 'mes', 'Manes.08G080900' => 'mes', 'Manes.10G049400' => 'mes', 'Mapoly0009s0186' => 'mpo', 'Mapoly0036s0118' => 'mpo', 'Mapoly0101s0046' => 'mpo', 'MBI04_g30218_MAGBIO' => 'mbi', 'MBI04_g35564_MAGBIO' => 'mbi', 'MBI12_g34011_MAGBIO' => 'mbi', 'MBI14_g04655_MAGBIO' => 'mbi', 'MCO07G653' => 'mco', 'MCO10G173' => 'mco', 'MD01G1087100' => 'mdo', 'MD01G1104200' => 'mdo', 'MD02G1205100' => 'mdo', 'MD04G1079200' => 'mdo', 'MD04G1131400' => 'mdo', 'MD07G1121600' => 'mdo', 'MD07G1157300' => 'mdo', 'MD07G1171000' => 'mdo', 'MD12G1144500' => 'mdo', 'Medtr1g094610' => 'mtr', 'Medtr4g021795' => 'mtr', 'Medtr4g023760' => 'mtr', 'Medtr7g118050' => 'mtr', 'MELO3C005582.2' => 'cme', 'MELO3C005989.2' => 'cme', 'MELO3C006192.2' => 'cme', 'MELO3C009248.2' => 'cme', 'MELO3C019817.2' => 'cme', 'Migut.B01625' => 'egut', 'Migut.B01915' => 'egut', 'Migut.F01721' => 'egut', 'Migut.J00314' => 'egut', 'MSTRG.20742' => 'ama', 'MSTRG.8134' => 'ama', 'Nitab4.5_0000096g0010' => 'nta', 'Nitab4.5_0000202g0030' => 'nta', 'Nitab4.5_0000216g0370' => 'nta', 'Nitab4.5_0000457g0230' => 'nta', 'Nitab4.5_0001702g0170' => 'nta', 'Nitab4.5_0003607g0010' => 'nta', 'Nitab4.5_0004917g0020' => 'nta', 'Nitab4.5_0007059g0010' => 'nta', 'Nitab4.5_0007184g0010' => 'nta', 'Nitab4.5_0007346g0020' => 'nta', 'Nn1g00410' => 'nnu', 'Nn1g01252' => 'nnu', 'Nn2g11168' => 'nnu', 'Nn2g13403' => 'nnu', 'Nn2g13760' => 'nnu', 'Nn4g26380' => 'nnu', 'Oeu000806.2' => 'oeu', 'Oeu005788.1' => 'oeu', 'Oeu006900.3' => 'oeu', 'Oeu007797.1' => 'oeu', 'Oeu011932.1' => 'oeu', 'Oeu022739.1' => 'oeu', 'Oeu037918.1' => 'oeu', 'Oeu055490.2' => 'oeu', 'Os01g0844400' => 'osa', 'Os02g0819100' => 'osa', 'Os03g0804300' => 'osa', 'Os05g0458000' => 'osa', 'Os07g0467800' => 'osa', 'Os12g0602200' => 'osa', 'Peaxi162Scf00013g03444' => 'pax', 'Peaxi162Scf00094g01120' => 'pax', 'Peaxi162Scf00191g01211' => 'pax', 'Peaxi162Scf00238g01110' => 'pax', 'Peaxi162Scf00330g00719' => 'pax', 'Peaxi162Scf00627g00018' => 'pax', 'PGR031G2686' => 'pgr', 'PGR042G0809' => 'pgr', 'PGR142G0193' => 'pgr', 'PGSC0003DMG400011066' => 'stu', 'PGSC0003DMG400012041' => 'stu', 'PGSC0003DMG400013678' => 'stu', 'PGSC0003DMG400023477' => 'stu', 'PGSC0003DMG400025956' => 'stu', 'PGSC0003DMG401019151' => 'stu', 'Phvul.006G116400' => 'pvu', 'Phvul.007G097300' => 'pvu', 'Phvul.010G015000' => 'pvu', 'Phvul.010G083900' => 'pvu', 'Potri.001G117100' => 'ptr', 'Potri.002G147300' => 'ptr', 'Potri.003G115600' => 'ptr', 'Potri.006G087400' => 'ptr', 'Potri.010G226100' => 'ptr', 'Potri.014G069200' => 'ptr', 'Potri.014G104000' => 'ptr', 'Potri.016G100200' => 'ptr', 'Pp3c10_20450' => 'ppa', 'Pp3c1_42400' => 'ppa', 'Pp3c3_24390' => 'ppa', 'Pp3c3_2860' => 'ppa', 'PRCOL_00003193' => 'pco', 'Prupe.2G144500' => 'ppe', 'Prupe.2G195700' => 'ppe', 'Prupe.2G209800' => 'ppe', 'Prupe.5G080000' => 'ppe', 'Prupe.6G257900' => 'ppe', 'Psat3g001160' => 'psa', 'Psat6g181880' => 'psa', 'Psat7g233720' => 'psa', 'PSO063G7587' => 'pso', 'PSO339G2145' => 'pso', 'PSO339G3369' => 'pso', 'PSO478G2747' => 'pso', 'PSO513G0140' => 'pso', 'PSO782G1614' => 'pso', 'PSO782G4889' => 'pso', 'PSO782G5485' => 'pso', 'PSO801G0241' => 'pso', 'QL07p048854' => 'qlo', 'QL08p046745' => 'qlo', 'QL08p052606' => 'qlo', 'QL08p053414' => 'qlo', 'QL08p054868' => 'qlo', 'RcHm_v2.0_Chr1g0350251' => 'rch', 'RcHm_v2.0_Chr1g0360851' => 'rch', 'RcHm_v2.0_Chr1g0362791' => 'rch', 'RcHm_v2.0_Chr3g0466281' => 'rch', 'RcHm_v2.0_Chr7g0201481' => 'rch', 'Rhsim01G0148600' => 'rsi', 'Rhsim05G0194400' => 'rsi', 'Rhsim07G0000700' => 'rsi', 'Rhsim07G0000800' => 'rsi', 'Rhsim07G0027900' => 'rsi', 'Rhsim09G0149500' => 'rsi', 'RhsimUnG0186900' => 'rsi', 'Sabra01G0089900' => 'sbr', 'Sabra02G0114700' => 'sbr', 'Sabra02G0116300' => 'sbr', 'Sabra03G0080100' => 'sbr', 'Sabra08G0024300' => 'sbr', 'Sabra10G0174300' => 'sbr', 'Sabra14G0048900' => 'sbr', 'Sabra14G0076500' => 'sbr', 'SalBow5G2513' => 'sbo', 'Sc01g0002300' => 'sci', 'Sc01g0004450' => 'sci', 'Sc06g0001680' => 'sci', 'Sc23g0003580' => 'sci', 'Sed0000913' => 'sed', 'Sed0001655' => 'sed', 'Sed0007745' => 'sed', 'Sed0010951' => 'sed', 'Sed0017599' => 'sed', 'Sed0021405' => 'sed', 'Sed0022810' => 'sed', 'SEGI_07099' => 'sgi', 'SEGI_11931' => 'sgi', 'SEGI_13187' => 'sgi', 'SEGI_29958' => 'sgi', 'SEGI_36351' => 'sgi', 'SGA_v2.0_scaffold126G33770' => 'sas', 'SGA_v2.0_scaffold153G37003' => 'sas', 'SGA_v2.0_scaffold2G01359' => 'sas', 'SGA_v2.0_scaffold5G03064' => 'sas', 'SGA_v2.0_scaffold95G28903' => 'sas', 'SHI12701' => 'shi', 'SHI26410' => 'shi', 'SHI38997' => 'shi', 'SHI53759' => 'shi', 'SHI53886' => 'shi', 'SHI54714' => 'shi', 'SMO011G0041' => 'smo', 'SMO146G0251' => 'smo', 'SMO160G0004' => 'smo', 'SMO174G0057' => 'smo', 'SMO244G0089' => 'smo', 'SMO296G0011' => 'smo', 'Solyc01g091280.3' => 'sly', 'Solyc05g047610.3' => 'sly', 'Solyc05g047640.3' => 'sly', 'Solyc05g055630.3' => 'sly', 'Solyc10g018160.2' => 'sly', 'Solyc10g084820.2' => 'sly', 'Solyc10g086565.2' => 'sly', 'Sopen01g037030' => 'spe', 'Sopen05g027920' => 'spe', 'Sopen05g034070' => 'spe', 'Sopen10g007260' => 'spe', 'Sopen10g034260' => 'spe', 'Sopen10g035950' => 'spe', 'Sp3g07710' => 'spa', 'Sp4g27420' => 'spa', 'Sp5g02450' => 'spa', 'Sp6g01280' => 'spa', 'Sp6g38480' => 'spa', 'Sp7g20780' => 'spa', 'TAR374G1413' => 'tar', 'TAR623G1777' => 'tar', 'TAR629G2370' => 'tar', 'TAR633G1759' => 'tar', 'TAR636G3387' => 'tar', 'THA.LOC104802447' => 'tha', 'THA.LOC104813916' => 'tha', 'THA.LOC104816423' => 'tha', 'THA.LOC104817246' => 'tha', 'THA.LOC104825895' => 'tha', 'Thecc.01G335200' => 'tca', 'Thecc.01G377400' => 'tca', 'Thecc.03G262200' => 'tca', 'Thecc.05G036800' => 'tca', 'Thecc.10G080500' => 'tca', 'Thecc.10G080800' => 'tca', 'Thhalv10001560m.g' => 'esa', 'Thhalv10006120m.g' => 'esa', 'Thhalv10014375m.g' => 'esa', 'Thhalv10021264m.g' => 'esa', 'Thhalv10028856m.g' => 'esa', 'TPR.G1914' => 'tpr', 'TPR.G4757' => 'tpr', 'TPR.G5595' => 'tpr', 'TWI14G0952' => 'twi', 'TWI14G1307' => 'twi', 'TWI38G2143' => 'twi', 'TWI59G0826' => 'twi', 'TWI77G0527' => 'twi', 'TWI81G0150' => 'twi', 'unitig_21.g21018' => 'ugi', 'unitig_26.g9725' => 'ugi', 'unitig_744.g24653' => 'ugi', 'unitig_749.g13778' => 'ugi', 'unitig_899.g15035' => 'ugi', 'vmacro04296' => 'vma', 'vmacro04852' => 'vma', 'vmacro13404' => 'vma', 'vmacro20169' => 'vma', 'vmacro21014' => 'vma', 'VMungo0331G0237' => 'vmu', 'VMungo0331G0706' => 'vmu', 'VMungo0331G1361' => 'vmu', 'VMungo0331G1489' => 'vmu', 'VMungo0540G1037' => 'vmu', 'VMungo0720G2487' => 'vmu', 'VMungo0720G2721' => 'vmu', 'Zm00001eb086860' => 'zma', 'Zm00001eb104760' => 'zma', 'Zm00001eb148220' => 'zma', 'Zm00001eb259030' => 'zma', 'Zm00001eb289590' => 'zma', 'Zm00001eb420150' => 'zma' ), 'gf_id' => 'HOM05D000968', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000968' ), 'data_identifier' => 'HOM05D000968', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000968', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p31690' => 'bna', 'A03p36040' => 'bna', 'A03p53730' => 'bna', 'A04p01410' => 'bna', 'A05p05420' => 'bna', 'A05p39630' => 'bna', 'A05p39640' => 'bna', 'A09p00970' => 'bna', 'A09p53060' => 'bna', 'A10p31890' => 'bna', 'Aa31LG10G15040' => 'aar', 'Aa31LG1G21090' => 'aar', 'Aa31LG1G26900' => 'aar', 'Aa31LG3G1820' => 'aar', 'Aa31LG5G1100' => 'aar', 'Aa31LG6G4740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2265' => 'aag', 'Actinidia07998' => 'ach', 'Actinidia11266' => 'ach', 'Actinidia12682' => 'ach', 'Actinidia26479' => 'ach', 'Actinidia31406' => 'ach', 'Actinidia32437' => 'ach', 'Actinidia38862' => 'ach', 'Ah.05g174230' => 'amhyb', 'Ah.05g179070' => 'amhyb', 'Ah.05g179090' => 'amhyb', 'Ah.12g059950' => 'amhyb', 'AL3G20480' => 'aly', 'AL4G44520' => 'aly', 'AL5G43110' => 'aly', 'AL6G13890' => 'aly', 'AL6G52620' => 'aly', 'AL7G30830' => 'aly', 'Aqoxy1G00899' => 'aox', 'Aqoxy5G04333' => 'aox', 'Aqoxy7G00641' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3IZ0NN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4EF6AW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W9P8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79GA3M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C43NQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFCU6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G95YVJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCHK29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LU1UG8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX91RN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGB4B1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8DA0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9H7JI' => 'arhy', 'AT3G09320' => 'ath', 'AT3G60800' => 'ath', 'AT4G00840' => 'ath', 'AT4G22750' => 'ath', 'AT5G04270' => 'ath', 'ATR0090G003' => 'atr', 'ATR0559G349' => 'atr', 'ATR0680G261' => 'atr', 'ATR0810G048' => 'atr', 'Atru.chr12.831' => 'acertr', 'Atru.chr5.303' => 'acertr', 'Atru.chr5.748' => 'acertr', 'Atru.chr8.1999' => 'acertr', 'Atru.chr9.1436' => 'acertr', 'AUR62004211' => 'cqu', 'AUR62004548' => 'cqu', 'AUR62013637' => 'cqu', 'AUR62022662' => 'cqu', 'AUR62025777' => 'cqu', 'AUR62042386' => 'cqu', 'BcaB01g02310' => 'bca', 'BcaB01g06062' => 'bca', 'BcaB02g08975' => 'bca', 'BcaB02g08980' => 'bca', 'BcaC01g04228' => 'bca', 'BcaC01g06830' => 'bca', 'BcaC02g10186' => 'bca', 'BcaC02g12214' => 'bca', 'BcaC04g24101' => 'bca', 'BcaC05g29520' => 'bca', 'BcaC05g29661' => 'bca', 'BcaC06g32130' => 'bca', 'BcaC06g32131' => 'bca', 'BcaC07g40601' => 'bca', 'BcaC07g42641' => 'bca', 'BcaNung01038' => 'bca', 'BcaNung01676' => 'bca', 'BcaNung02480' => 'bca', 'BcaNung07376' => 'bca', 'BolC3t16146H' => 'bol', 'BolC3t16637H' => 'bol', 'BolC4t22257H' => 'bol', 'BolC4t24728H' => 'bol', 'BolC5t34517H' => 'bol', 'BolC7t45703H' => 'bol', 'BolC8t51166H' => 'bol', 'BolC9t53038H' => 'bol', 'BolC9t60000H' => 'bol', 'BraA01t01345Z' => 'bra', 'BraA01t01346Z' => 'bra', 'BraA01t01348Z' => 'bra', 'BraA03t12347Z' => 'bra', 'BraA03t12775Z' => 'bra', 'BraA03t14439Z' => 'bra', 'BraA04t15860Z' => 'bra', 'BraA05t19511Z' => 'bra', 'BraA05t22746Z' => 'bra', 'BraA09t35767Z' => 'bra', 'BraA09t40732Z' => 'bra', 'BraA10t45233Z' => 'bra', 'C03p38720' => 'bna', 'C03p43680' => 'bna', 'C04p06350' => 'bna', 'C04p31800' => 'bna', 'C05p58680' => 'bna', 'C07p52110' => 'bna', 'C08p35760' => 'bna', 'C09p01050' => 'bna', 'C09p72600' => 'bna', 'CAN.G106.2' => 'can', 'CAN.G1482.1' => 'can', 'CAN.G324.12' => 'can', 'CAN.G388.20' => 'can', 'CAN.G412.7' => 'can', 'CAN.G694.32' => 'can', 'CAN.G92.12' => 'can', 'CANSAT11G2353' => 'cansat', 'CANSAT21G1398' => 'cansat', 'CANSAT56G2456' => 'cansat', 'CANSAT56G3031' => 'cansat', 'CANSAT56G4539' => 'cansat', 'CARHR083680' => 'chi', 'CARHR171190' => 'chi', 'CARHR209010' => 'chi', 'CARHR229680' => 'chi', 'CARHR249490' => 'chi', 'Carub.0003s0844' => 'cru', 'Carub.0005s2755' => 'cru', 'Carub.0006s0322' => 'cru', 'Carub.0006s3586' => 'cru', 'Carub.0007s1855' => 'cru', 'Ca_07808_v3' => 'car', 'Ca_09535_v3' => 'car', 'Ca_10548_v3' => 'car', 'Ca_19913_v3' => 'car', 'Ca_19916_v3' => 'car', 'Ca_19975_v3' => 'car', 'CBR_g22876' => 'cbr', 'CBR_g22879' => 'cbr', 'CBR_g38491' => 'cbr', 'CBR_g54185' => 'cbr', 'CBR_g54190' => 'cbr', 'Cc02_g11020' => 'ccan', 'Cc02_g23920' => 'ccan', 'Cc02_g39860' => 'ccan', 'Cc02_g39870' => 'ccan', 'Cc03_g06760' => 'ccan', 'Cc06_g02450' => 'ccan', 'Cc09_g09450' => 'ccan', 'CDE02G1959' => 'cde', 'CDE04G0600' => 'cde', 'CDE07G1996' => 'cde', 'CDE07G2078' => 'cde', 'CDE11G0611' => 'cde', 'Cfa001683' => 'cfa', 'Cfa001734' => 'cfa', 'Cfa001737' => 'cfa', 'Cfa003751' => 'cfa', 'Cfa012019' => 'cfa', 'Cfa017353' => 'cfa', 'Cfa017732' => 'cfa', 'Cfa022464' => 'cfa', 'Ciclev10012400m.g' => 'ccl', 'Ciclev10021242m.g' => 'ccl', 'Ciclev10021302m.g' => 'ccl', 'Ciclev10021463m.g' => 'ccl', 'Ciclev10032359m.g' => 'ccl', 'CiPaw.01G081000' => 'cil', 'CiPaw.01G262500' => 'cil', 'CiPaw.01G269800' => 'cil', 'CiPaw.02G168400' => 'cil', 'CiPaw.05G119500' => 'cil', 'CiPaw.11G147300' => 'cil', 'ClCG01G003630' => 'cla', 'ClCG05G000510' => 'cla', 'ClCG05G002300' => 'cla', 'ClCG08G007650' => 'cla', 'ClCG10G021250' => 'cla', 'COL.COLO4_06218' => 'col', 'COL.COLO4_12538' => 'col', 'COL.COLO4_14775' => 'col', 'COL.COLO4_23875' => 'col', 'Cpa.g.sc141.16' => 'cpa', 'Cpa.g.sc169.16' => 'cpa', 'Cpa.g.sc244.4' => 'cpa', 'Cpa.g.sc244.5' => 'cpa', 'Cpa.g.sc29.87' => 'cpa', 'Cpa.g.sc53.115' => 'cpa', 'Cre03.g207502' => 'cre', 'Cre06.g277000' => 'cre', 'Cre09.g394050' => 'cre', 'CsaV3_3G007680' => 'csa', 'CsaV3_3G009710' => 'csa', 'CsaV3_3G034790' => 'csa', 'CsaV3_5G003750' => 'csa', 'CsaV3_6G036620' => 'csa', 'CSS0002288' => 'camsi', 'CSS0011250' => 'camsi', 'CSS0021619' => 'camsi', 'CSS0046701' => 'camsi', 'DCAR_006420' => 'dca', 'DCAR_006865' => 'dca', 'DCAR_008558' => 'dca', 'DCAR_028754' => 'dca', 'DCAR_028755' => 'dca', 'Dinv31218' => 'din', 'Dinv32371' => 'din', 'Dinv34250' => 'din', 'Dinv37156' => 'din', 'Dinv43704' => 'din', 'Duzib093G1811' => 'dzi', 'Duzib106G1622' => 'dzi', 'Duzib114G0504' => 'dzi', 'Duzib128G0338' => 'dzi', 'Duzib128G1577' => 'dzi', 'Duzib133G0104' => 'dzi', 'Duzib133G1080' => 'dzi', 'Duzib138G0324' => 'dzi', 'Duzib138G0394' => 'dzi', 'Duzib205G0122' => 'dzi', 'Duzib268G1020' => 'dzi', 'Duzib268G1359' => 'dzi', 'ECA232G3929' => 'eca', 'ECA236G2210' => 'eca', 'ECA236G2287' => 'eca', 'ECA240G4568' => 'eca', 'ECA247G0894' => 'eca', 'EL10Ac1g00200' => 'bvu', 'EL10Ac1g00886' => 'bvu', 'EL10As1g23091' => 'bvu', 'EL10As1g23092' => 'bvu', 'Eucgr.A01284' => 'egr', 'Eucgr.A01285' => 'egr', 'Eucgr.D02456' => 'egr', 'Eucgr.E00018' => 'egr', 'Eucgr.E01439' => 'egr', 'Eucgr.G02859' => 'egr', 'FAN01G0168' => 'fan', 'FAN01G0453' => 'fan', 'FAN01G2761' => 'fan', 'FAN02G1239' => 'fan', 'FAN03G0645' => 'fan', 'FAN03G2707' => 'fan', 'FAN03G2978' => 'fan', 'FAN04G0227' => 'fan', 'FAN06G0091' => 'fan', 'FAN06G1418' => 'fan', 'FAN06G1512' => 'fan', 'FAN06G1986' => 'fan', 'FAN06G2905' => 'fan', 'FAN06G4325' => 'fan', 'FAN08G0033' => 'fan', 'FAN09G0642' => 'fan', 'FAN10G1763' => 'fan', 'FAN10G2026' => 'fan', 'FAN10G2513' => 'fan', 'FAN10G3402' => 'fan', 'FAN10G3564' => 'fan', 'FAN10G3987' => 'fan', 'FAN13G1490' => 'fan', 'FAN14G5857' => 'fan', 'FAN18G1188' => 'fan', 'FvH4_5g00750' => 'fve', 'FvH4_6g13410' => 'fve', 'FvH4_7g11740' => 'fve', 'FvH4_7g17410' => 'fve', 'FvH4_7g18860' => 'fve', 'Glyma.01G099100' => 'gma', 'Glyma.01G142300' => 'gma', 'Glyma.03G025500' => 'gma', 'Glyma.03G069700' => 'gma', 'Glyma.03G260000' => 'gma', 'Glyma.09G269800' => 'gma', 'Glyma.10G208700' => 'gma', 'Glyma.18G220400' => 'gma', 'Glyma.20G182000' => 'gma', 'Gohir.A01G221726' => 'ghi', 'Gohir.A07G134600' => 'ghi', 'Gohir.A07G146000' => 'ghi', 'Gohir.A08G173900' => 'ghi', 'Gohir.A09G194900' => 'ghi', 'Gohir.A10G204100' => 'ghi', 'Gohir.A11G080600' => 'ghi', 'Gohir.A11G327500' => 'ghi', 'Gohir.A12G101800' => 'ghi', 'Gohir.D01G211200' => 'ghi', 'Gohir.D07G139200' => 'ghi', 'Gohir.D07G152100' => 'ghi', 'Gohir.D08G192600' => 'ghi', 'Gohir.D09G189200' => 'ghi', 'Gohir.D10G212000' => 'ghi', 'Gohir.D11G085200' => 'ghi', 'Gohir.D11G346400' => 'ghi', 'Gohir.D12G104800' => 'ghi', 'Gorai.001G151300' => 'gra', 'Gorai.001G174100' => 'gra', 'Gorai.002G257000' => 'gra', 'Gorai.004G202600' => 'gra', 'Gorai.007G090900' => 'gra', 'Gorai.007G376700' => 'gra', 'Gorai.008G114100' => 'gra', 'Gorai.011G237900' => 'gra', 'GSVIVG01005450001' => 'vvi', 'GSVIVG01016232001' => 'vvi', 'GSVIVG01026157001' => 'vvi', 'GSVIVG01027419001' => 'vvi', 'GSVIVG01027631001' => 'vvi', 'GSVIVG01034143001' => 'vvi', 'HanXRQChr03g0093921' => 'han', 'HanXRQChr04g0120001' => 'han', 'HanXRQChr04g0122561' => 'han', 'HanXRQChr09g0246851' => 'han', 'HanXRQChr10g0293311' => 'han', 'HanXRQChr13g0425231' => 'han', 'HanXRQChr16g0532571' => 'han', 'Haze_09050' => 'cav', 'Haze_15715' => 'cav', 'Haze_15716' => 'cav', 'Haze_16803' => 'cav', 'Haze_16850' => 'cav', 'Hma1.2p1_0301F.1_g118655' => 'hma', 'Hma1.2p1_0309F.1_g120590' => 'hma', 'Hma1.2p1_0936F.1_g238900' => 'hma', 'Hma1.2p1_3552F.1_g336740' => 'hma', 'HPP92_003520' => 'vpl', 'HPP92_006628' => 'vpl', 'HPP92_006645' => 'vpl', 'HPP92_014669' => 'vpl', 'HPP92_015077' => 'vpl', 'Hund16742' => 'sun', 'Hund17022' => 'sun', 'Lalb_Chr02g0152131' => 'lal', 'Lalb_Chr05g0225371' => 'lal', 'Lalb_Chr07g0189841' => 'lal', 'Lalb_Chr07g0192961' => 'lal', 'Lalb_Chr12g0208221' => 'lal', 'Lalb_Chr13g0291211' => 'lal', 'Lalb_Chr13g0291781' => 'lal', 'Lalb_Chr18g0044651' => 'lal', 'Lalb_Chr21g0313731' => 'lal', 'Lj1g0022533' => 'lja', 'Lj2A18T50' => 'lonja', 'Lj2A92G93' => 'lonja', 'Lj3A965T73' => 'lonja', 'Lj3g0000673' => 'lja', 'Lj3g0002666' => 'lja', 'Lj4g0016985' => 'lja', 'Lj5g0003625' => 'lja', 'Lj7A529G36' => 'lonja', 'Lj9A569T49' => 'lonja', 'Lj9A604T63' => 'lonja', 'Lsat_1_v5_gn_3_132060' => 'lsa', 'Lsat_1_v5_gn_4_68941' => 'lsa', 'Lsat_1_v5_gn_5_95580' => 'lsa', 'Lsat_1_v5_gn_7_161' => 'lsa', 'Lsat_1_v5_gn_7_7041' => 'lsa', 'Lsat_1_v5_gn_9_33481' => 'lsa', 'Lsat_1_v5_gn_9_68260' => 'lsa', 'Manes.01G073100' => 'mes', 'Manes.01G266300' => 'mes', 'Manes.02G033300' => 'mes', 'Manes.05G017900' => 'mes', 'Manes.05G046100' => 'mes', 'Manes.08G080900' => 'mes', 'Manes.10G049400' => 'mes', 'Mapoly0009s0186' => 'mpo', 'Mapoly0036s0118' => 'mpo', 'Mapoly0101s0046' => 'mpo', 'MBI04_g30218_MAGBIO' => 'mbi', 'MBI04_g35564_MAGBIO' => 'mbi', 'MBI12_g34011_MAGBIO' => 'mbi', 'MBI14_g04655_MAGBIO' => 'mbi', 'MCO07G653' => 'mco', 'MCO10G173' => 'mco', 'MD01G1087100' => 'mdo', 'MD01G1104200' => 'mdo', 'MD02G1205100' => 'mdo', 'MD04G1079200' => 'mdo', 'MD04G1131400' => 'mdo', 'MD07G1121600' => 'mdo', 'MD07G1157300' => 'mdo', 'MD07G1171000' => 'mdo', 'MD12G1144500' => 'mdo', 'Medtr1g094610' => 'mtr', 'Medtr4g021795' => 'mtr', 'Medtr4g023760' => 'mtr', 'Medtr7g118050' => 'mtr', 'MELO3C005582.2' => 'cme', 'MELO3C005989.2' => 'cme', 'MELO3C006192.2' => 'cme', 'MELO3C009248.2' => 'cme', 'MELO3C019817.2' => 'cme', 'Migut.B01625' => 'egut', 'Migut.B01915' => 'egut', 'Migut.F01721' => 'egut', 'Migut.J00314' => 'egut', 'MSTRG.20742' => 'ama', 'MSTRG.8134' => 'ama', 'Nitab4.5_0000096g0010' => 'nta', 'Nitab4.5_0000202g0030' => 'nta', 'Nitab4.5_0000216g0370' => 'nta', 'Nitab4.5_0000457g0230' => 'nta', 'Nitab4.5_0001702g0170' => 'nta', 'Nitab4.5_0003607g0010' => 'nta', 'Nitab4.5_0004917g0020' => 'nta', 'Nitab4.5_0007059g0010' => 'nta', 'Nitab4.5_0007184g0010' => 'nta', 'Nitab4.5_0007346g0020' => 'nta', 'Nn1g00410' => 'nnu', 'Nn1g01252' => 'nnu', 'Nn2g11168' => 'nnu', 'Nn2g13403' => 'nnu', 'Nn2g13760' => 'nnu', 'Nn4g26380' => 'nnu', 'Oeu000806.2' => 'oeu', 'Oeu005788.1' => 'oeu', 'Oeu006900.3' => 'oeu', 'Oeu007797.1' => 'oeu', 'Oeu011932.1' => 'oeu', 'Oeu022739.1' => 'oeu', 'Oeu037918.1' => 'oeu', 'Oeu055490.2' => 'oeu', 'Os01g0844400' => 'osa', 'Os02g0819100' => 'osa', 'Os03g0804300' => 'osa', 'Os05g0458000' => 'osa', 'Os07g0467800' => 'osa', 'Os12g0602200' => 'osa', 'Peaxi162Scf00013g03444' => 'pax', 'Peaxi162Scf00094g01120' => 'pax', 'Peaxi162Scf00191g01211' => 'pax', 'Peaxi162Scf00238g01110' => 'pax', 'Peaxi162Scf00330g00719' => 'pax', 'Peaxi162Scf00627g00018' => 'pax', 'PGR031G2686' => 'pgr', 'PGR042G0809' => 'pgr', 'PGR142G0193' => 'pgr', 'PGSC0003DMG400011066' => 'stu', 'PGSC0003DMG400012041' => 'stu', 'PGSC0003DMG400013678' => 'stu', 'PGSC0003DMG400023477' => 'stu', 'PGSC0003DMG400025956' => 'stu', 'PGSC0003DMG401019151' => 'stu', 'Phvul.006G116400' => 'pvu', 'Phvul.007G097300' => 'pvu', 'Phvul.010G015000' => 'pvu', 'Phvul.010G083900' => 'pvu', 'Potri.001G117100' => 'ptr', 'Potri.002G147300' => 'ptr', 'Potri.003G115600' => 'ptr', 'Potri.006G087400' => 'ptr', 'Potri.010G226100' => 'ptr', 'Potri.014G069200' => 'ptr', 'Potri.014G104000' => 'ptr', 'Potri.016G100200' => 'ptr', 'Pp3c10_20450' => 'ppa', 'Pp3c1_42400' => 'ppa', 'Pp3c3_24390' => 'ppa', 'Pp3c3_2860' => 'ppa', 'PRCOL_00003193' => 'pco', 'Prupe.2G144500' => 'ppe', 'Prupe.2G195700' => 'ppe', 'Prupe.2G209800' => 'ppe', 'Prupe.5G080000' => 'ppe', 'Prupe.6G257900' => 'ppe', 'Psat3g001160' => 'psa', 'Psat6g181880' => 'psa', 'Psat7g233720' => 'psa', 'PSO063G7587' => 'pso', 'PSO339G2145' => 'pso', 'PSO339G3369' => 'pso', 'PSO478G2747' => 'pso', 'PSO513G0140' => 'pso', 'PSO782G1614' => 'pso', 'PSO782G4889' => 'pso', 'PSO782G5485' => 'pso', 'PSO801G0241' => 'pso', 'QL07p048854' => 'qlo', 'QL08p046745' => 'qlo', 'QL08p052606' => 'qlo', 'QL08p053414' => 'qlo', 'QL08p054868' => 'qlo', 'RcHm_v2.0_Chr1g0350251' => 'rch', 'RcHm_v2.0_Chr1g0360851' => 'rch', 'RcHm_v2.0_Chr1g0362791' => 'rch', 'RcHm_v2.0_Chr3g0466281' => 'rch', 'RcHm_v2.0_Chr7g0201481' => 'rch', 'Rhsim01G0148600' => 'rsi', 'Rhsim05G0194400' => 'rsi', 'Rhsim07G0000700' => 'rsi', 'Rhsim07G0000800' => 'rsi', 'Rhsim07G0027900' => 'rsi', 'Rhsim09G0149500' => 'rsi', 'RhsimUnG0186900' => 'rsi', 'Sabra01G0089900' => 'sbr', 'Sabra02G0114700' => 'sbr', 'Sabra02G0116300' => 'sbr', 'Sabra03G0080100' => 'sbr', 'Sabra08G0024300' => 'sbr', 'Sabra10G0174300' => 'sbr', 'Sabra14G0048900' => 'sbr', 'Sabra14G0076500' => 'sbr', 'SalBow5G2513' => 'sbo', 'Sc01g0002300' => 'sci', 'Sc01g0004450' => 'sci', 'Sc06g0001680' => 'sci', 'Sc23g0003580' => 'sci', 'Sed0000913' => 'sed', 'Sed0001655' => 'sed', 'Sed0007745' => 'sed', 'Sed0010951' => 'sed', 'Sed0017599' => 'sed', 'Sed0021405' => 'sed', 'Sed0022810' => 'sed', 'SEGI_07099' => 'sgi', 'SEGI_11931' => 'sgi', 'SEGI_13187' => 'sgi', 'SEGI_29958' => 'sgi', 'SEGI_36351' => 'sgi', 'SGA_v2.0_scaffold126G33770' => 'sas', 'SGA_v2.0_scaffold153G37003' => 'sas', 'SGA_v2.0_scaffold2G01359' => 'sas', 'SGA_v2.0_scaffold5G03064' => 'sas', 'SGA_v2.0_scaffold95G28903' => 'sas', 'SHI12701' => 'shi', 'SHI26410' => 'shi', 'SHI38997' => 'shi', 'SHI53759' => 'shi', 'SHI53886' => 'shi', 'SHI54714' => 'shi', 'SMO011G0041' => 'smo', 'SMO146G0251' => 'smo', 'SMO160G0004' => 'smo', 'SMO174G0057' => 'smo', 'SMO244G0089' => 'smo', 'SMO296G0011' => 'smo', 'Solyc01g091280.3' => 'sly', 'Solyc05g047610.3' => 'sly', 'Solyc05g047640.3' => 'sly', 'Solyc05g055630.3' => 'sly', 'Solyc10g018160.2' => 'sly', 'Solyc10g084820.2' => 'sly', 'Solyc10g086565.2' => 'sly', 'Sopen01g037030' => 'spe', 'Sopen05g027920' => 'spe', 'Sopen05g034070' => 'spe', 'Sopen10g007260' => 'spe', 'Sopen10g034260' => 'spe', 'Sopen10g035950' => 'spe', 'Sp3g07710' => 'spa', 'Sp4g27420' => 'spa', 'Sp5g02450' => 'spa', 'Sp6g01280' => 'spa', 'Sp6g38480' => 'spa', 'Sp7g20780' => 'spa', 'TAR374G1413' => 'tar', 'TAR623G1777' => 'tar', 'TAR629G2370' => 'tar', 'TAR633G1759' => 'tar', 'TAR636G3387' => 'tar', 'THA.LOC104802447' => 'tha', 'THA.LOC104813916' => 'tha', 'THA.LOC104816423' => 'tha', 'THA.LOC104817246' => 'tha', 'THA.LOC104825895' => 'tha', 'Thecc.01G335200' => 'tca', 'Thecc.01G377400' => 'tca', 'Thecc.03G262200' => 'tca', 'Thecc.05G036800' => 'tca', 'Thecc.10G080500' => 'tca', 'Thecc.10G080800' => 'tca', 'Thhalv10001560m.g' => 'esa', 'Thhalv10006120m.g' => 'esa', 'Thhalv10014375m.g' => 'esa', 'Thhalv10021264m.g' => 'esa', 'Thhalv10028856m.g' => 'esa', 'TPR.G1914' => 'tpr', 'TPR.G4757' => 'tpr', 'TPR.G5595' => 'tpr', 'TWI14G0952' => 'twi', 'TWI14G1307' => 'twi', 'TWI38G2143' => 'twi', 'TWI59G0826' => 'twi', 'TWI77G0527' => 'twi', 'TWI81G0150' => 'twi', 'unitig_21.g21018' => 'ugi', 'unitig_26.g9725' => 'ugi', 'unitig_744.g24653' => 'ugi', 'unitig_749.g13778' => 'ugi', 'unitig_899.g15035' => 'ugi', 'vmacro04296' => 'vma', 'vmacro04852' => 'vma', 'vmacro13404' => 'vma', 'vmacro20169' => 'vma', 'vmacro21014' => 'vma', 'VMungo0331G0237' => 'vmu', 'VMungo0331G0706' => 'vmu', 'VMungo0331G1361' => 'vmu', 'VMungo0331G1489' => 'vmu', 'VMungo0540G1037' => 'vmu', 'VMungo0720G2487' => 'vmu', 'VMungo0720G2721' => 'vmu', 'Zm00001eb086860' => 'zma', 'Zm00001eb104760' => 'zma', 'Zm00001eb148220' => 'zma', 'Zm00001eb259030' => 'zma', 'Zm00001eb289590' => 'zma', 'Zm00001eb420150' => 'zma' ) $gf_id = 'HOM05D000968' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000968' ) $data_identifier = 'HOM05D000968' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 19, 'bol' => (int) 9, 'bra' => (int) 12, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 5, 'ccan' => (int) 7, 'cde' => (int) 5, 'cfa' => (int) 8, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 4, 'dca' => (int) 5, 'din' => (int) 5, 'dzi' => (int) 12, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 25, 'fve' => (int) 5, 'gma' => (int) 9, 'ghi' => (int) 18, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 7, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 5, 'sun' => (int) 2, 'lal' => (int) 9, 'lja' => (int) 5, 'lonja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 9, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 2, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 3, 'stu' => (int) 6, 'pvu' => (int) 4, 'ptr' => (int) 8, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 3, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 1, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 5, 'sas' => (int) 5, 'shi' => (int) 6, 'smo' => (int) 6, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 3, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420150' $species_info = array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ) $local_species = 'aag' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000968', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p31690' => 'bna', 'A03p36040' => 'bna', 'A03p53730' => 'bna', 'A04p01410' => 'bna', 'A05p05420' => 'bna', 'A05p39630' => 'bna', 'A05p39640' => 'bna', 'A09p00970' => 'bna', 'A09p53060' => 'bna', 'A10p31890' => 'bna', 'Aa31LG10G15040' => 'aar', 'Aa31LG1G21090' => 'aar', 'Aa31LG1G26900' => 'aar', 'Aa31LG3G1820' => 'aar', 'Aa31LG5G1100' => 'aar', 'Aa31LG6G4740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2265' => 'aag', 'Actinidia07998' => 'ach', 'Actinidia11266' => 'ach', 'Actinidia12682' => 'ach', 'Actinidia26479' => 'ach', 'Actinidia31406' => 'ach', 'Actinidia32437' => 'ach', 'Actinidia38862' => 'ach', 'Ah.05g174230' => 'amhyb', 'Ah.05g179070' => 'amhyb', 'Ah.05g179090' => 'amhyb', 'Ah.12g059950' => 'amhyb', 'AL3G20480' => 'aly', 'AL4G44520' => 'aly', 'AL5G43110' => 'aly', 'AL6G13890' => 'aly', 'AL6G52620' => 'aly', 'AL7G30830' => 'aly', 'Aqoxy1G00899' => 'aox', 'Aqoxy5G04333' => 'aox', 'Aqoxy7G00641' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3IZ0NN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4EF6AW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W9P8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79GA3M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C43NQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFCU6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G95YVJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCHK29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LU1UG8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX91RN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGB4B1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8DA0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9H7JI' => 'arhy', 'AT3G09320' => 'ath', 'AT3G60800' => 'ath', 'AT4G00840' => 'ath', 'AT4G22750' => 'ath', 'AT5G04270' => 'ath', 'ATR0090G003' => 'atr', 'ATR0559G349' => 'atr', 'ATR0680G261' => 'atr', 'ATR0810G048' => 'atr', 'Atru.chr12.831' => 'acertr', 'Atru.chr5.303' => 'acertr', 'Atru.chr5.748' => 'acertr', 'Atru.chr8.1999' => 'acertr', 'Atru.chr9.1436' => 'acertr', 'AUR62004211' => 'cqu', 'AUR62004548' => 'cqu', 'AUR62013637' => 'cqu', 'AUR62022662' => 'cqu', 'AUR62025777' => 'cqu', 'AUR62042386' => 'cqu', 'BcaB01g02310' => 'bca', 'BcaB01g06062' => 'bca', 'BcaB02g08975' => 'bca', 'BcaB02g08980' => 'bca', 'BcaC01g04228' => 'bca', 'BcaC01g06830' => 'bca', 'BcaC02g10186' => 'bca', 'BcaC02g12214' => 'bca', 'BcaC04g24101' => 'bca', 'BcaC05g29520' => 'bca', 'BcaC05g29661' => 'bca', 'BcaC06g32130' => 'bca', 'BcaC06g32131' => 'bca', 'BcaC07g40601' => 'bca', 'BcaC07g42641' => 'bca', 'BcaNung01038' => 'bca', 'BcaNung01676' => 'bca', 'BcaNung02480' => 'bca', 'BcaNung07376' => 'bca', 'BolC3t16146H' => 'bol', 'BolC3t16637H' => 'bol', 'BolC4t22257H' => 'bol', 'BolC4t24728H' => 'bol', 'BolC5t34517H' => 'bol', 'BolC7t45703H' => 'bol', 'BolC8t51166H' => 'bol', 'BolC9t53038H' => 'bol', 'BolC9t60000H' => 'bol', 'BraA01t01345Z' => 'bra', 'BraA01t01346Z' => 'bra', 'BraA01t01348Z' => 'bra', 'BraA03t12347Z' => 'bra', 'BraA03t12775Z' => 'bra', 'BraA03t14439Z' => 'bra', 'BraA04t15860Z' => 'bra', 'BraA05t19511Z' => 'bra', 'BraA05t22746Z' => 'bra', 'BraA09t35767Z' => 'bra', 'BraA09t40732Z' => 'bra', 'BraA10t45233Z' => 'bra', 'C03p38720' => 'bna', 'C03p43680' => 'bna', 'C04p06350' => 'bna', 'C04p31800' => 'bna', 'C05p58680' => 'bna', 'C07p52110' => 'bna', 'C08p35760' => 'bna', 'C09p01050' => 'bna', 'C09p72600' => 'bna', 'CAN.G106.2' => 'can', 'CAN.G1482.1' => 'can', 'CAN.G324.12' => 'can', 'CAN.G388.20' => 'can', 'CAN.G412.7' => 'can', 'CAN.G694.32' => 'can', 'CAN.G92.12' => 'can', 'CANSAT11G2353' => 'cansat', 'CANSAT21G1398' => 'cansat', 'CANSAT56G2456' => 'cansat', 'CANSAT56G3031' => 'cansat', 'CANSAT56G4539' => 'cansat', 'CARHR083680' => 'chi', 'CARHR171190' => 'chi', 'CARHR209010' => 'chi', 'CARHR229680' => 'chi', 'CARHR249490' => 'chi', 'Carub.0003s0844' => 'cru', 'Carub.0005s2755' => 'cru', 'Carub.0006s0322' => 'cru', 'Carub.0006s3586' => 'cru', 'Carub.0007s1855' => 'cru', 'Ca_07808_v3' => 'car', 'Ca_09535_v3' => 'car', 'Ca_10548_v3' => 'car', 'Ca_19913_v3' => 'car', 'Ca_19916_v3' => 'car', 'Ca_19975_v3' => 'car', 'CBR_g22876' => 'cbr', 'CBR_g22879' => 'cbr', 'CBR_g38491' => 'cbr', 'CBR_g54185' => 'cbr', 'CBR_g54190' => 'cbr', 'Cc02_g11020' => 'ccan', 'Cc02_g23920' => 'ccan', 'Cc02_g39860' => 'ccan', 'Cc02_g39870' => 'ccan', 'Cc03_g06760' => 'ccan', 'Cc06_g02450' => 'ccan', 'Cc09_g09450' => 'ccan', 'CDE02G1959' => 'cde', 'CDE04G0600' => 'cde', 'CDE07G1996' => 'cde', 'CDE07G2078' => 'cde', 'CDE11G0611' => 'cde', 'Cfa001683' => 'cfa', 'Cfa001734' => 'cfa', 'Cfa001737' => 'cfa', 'Cfa003751' => 'cfa', 'Cfa012019' => 'cfa', 'Cfa017353' => 'cfa', 'Cfa017732' => 'cfa', 'Cfa022464' => 'cfa', 'Ciclev10012400m.g' => 'ccl', 'Ciclev10021242m.g' => 'ccl', 'Ciclev10021302m.g' => 'ccl', 'Ciclev10021463m.g' => 'ccl', 'Ciclev10032359m.g' => 'ccl', 'CiPaw.01G081000' => 'cil', 'CiPaw.01G262500' => 'cil', 'CiPaw.01G269800' => 'cil', 'CiPaw.02G168400' => 'cil', 'CiPaw.05G119500' => 'cil', 'CiPaw.11G147300' => 'cil', 'ClCG01G003630' => 'cla', 'ClCG05G000510' => 'cla', 'ClCG05G002300' => 'cla', 'ClCG08G007650' => 'cla', 'ClCG10G021250' => 'cla', 'COL.COLO4_06218' => 'col', 'COL.COLO4_12538' => 'col', 'COL.COLO4_14775' => 'col', 'COL.COLO4_23875' => 'col', 'Cpa.g.sc141.16' => 'cpa', 'Cpa.g.sc169.16' => 'cpa', 'Cpa.g.sc244.4' => 'cpa', 'Cpa.g.sc244.5' => 'cpa', 'Cpa.g.sc29.87' => 'cpa', 'Cpa.g.sc53.115' => 'cpa', 'Cre03.g207502' => 'cre', 'Cre06.g277000' => 'cre', 'Cre09.g394050' => 'cre', 'CsaV3_3G007680' => 'csa', 'CsaV3_3G009710' => 'csa', 'CsaV3_3G034790' => 'csa', 'CsaV3_5G003750' => 'csa', 'CsaV3_6G036620' => 'csa', 'CSS0002288' => 'camsi', 'CSS0011250' => 'camsi', 'CSS0021619' => 'camsi', 'CSS0046701' => 'camsi', 'DCAR_006420' => 'dca', 'DCAR_006865' => 'dca', 'DCAR_008558' => 'dca', 'DCAR_028754' => 'dca', 'DCAR_028755' => 'dca', 'Dinv31218' => 'din', 'Dinv32371' => 'din', 'Dinv34250' => 'din', 'Dinv37156' => 'din', 'Dinv43704' => 'din', 'Duzib093G1811' => 'dzi', 'Duzib106G1622' => 'dzi', 'Duzib114G0504' => 'dzi', 'Duzib128G0338' => 'dzi', 'Duzib128G1577' => 'dzi', 'Duzib133G0104' => 'dzi', 'Duzib133G1080' => 'dzi', 'Duzib138G0324' => 'dzi', 'Duzib138G0394' => 'dzi', 'Duzib205G0122' => 'dzi', 'Duzib268G1020' => 'dzi', 'Duzib268G1359' => 'dzi', 'ECA232G3929' => 'eca', 'ECA236G2210' => 'eca', 'ECA236G2287' => 'eca', 'ECA240G4568' => 'eca', 'ECA247G0894' => 'eca', 'EL10Ac1g00200' => 'bvu', 'EL10Ac1g00886' => 'bvu', 'EL10As1g23091' => 'bvu', 'EL10As1g23092' => 'bvu', 'Eucgr.A01284' => 'egr', 'Eucgr.A01285' => 'egr', 'Eucgr.D02456' => 'egr', 'Eucgr.E00018' => 'egr', 'Eucgr.E01439' => 'egr', 'Eucgr.G02859' => 'egr', 'FAN01G0168' => 'fan', 'FAN01G0453' => 'fan', 'FAN01G2761' => 'fan', 'FAN02G1239' => 'fan', 'FAN03G0645' => 'fan', 'FAN03G2707' => 'fan', 'FAN03G2978' => 'fan', 'FAN04G0227' => 'fan', 'FAN06G0091' => 'fan', 'FAN06G1418' => 'fan', 'FAN06G1512' => 'fan', 'FAN06G1986' => 'fan', 'FAN06G2905' => 'fan', 'FAN06G4325' => 'fan', 'FAN08G0033' => 'fan', 'FAN09G0642' => 'fan', 'FAN10G1763' => 'fan', 'FAN10G2026' => 'fan', 'FAN10G2513' => 'fan', 'FAN10G3402' => 'fan', 'FAN10G3564' => 'fan', 'FAN10G3987' => 'fan', 'FAN13G1490' => 'fan', 'FAN14G5857' => 'fan', 'FAN18G1188' => 'fan', 'FvH4_5g00750' => 'fve', 'FvH4_6g13410' => 'fve', 'FvH4_7g11740' => 'fve', 'FvH4_7g17410' => 'fve', 'FvH4_7g18860' => 'fve', 'Glyma.01G099100' => 'gma', 'Glyma.01G142300' => 'gma', 'Glyma.03G025500' => 'gma', 'Glyma.03G069700' => 'gma', 'Glyma.03G260000' => 'gma', 'Glyma.09G269800' => 'gma', 'Glyma.10G208700' => 'gma', 'Glyma.18G220400' => 'gma', 'Glyma.20G182000' => 'gma', 'Gohir.A01G221726' => 'ghi', 'Gohir.A07G134600' => 'ghi', 'Gohir.A07G146000' => 'ghi', 'Gohir.A08G173900' => 'ghi', 'Gohir.A09G194900' => 'ghi', 'Gohir.A10G204100' => 'ghi', 'Gohir.A11G080600' => 'ghi', 'Gohir.A11G327500' => 'ghi', 'Gohir.A12G101800' => 'ghi', 'Gohir.D01G211200' => 'ghi', 'Gohir.D07G139200' => 'ghi', 'Gohir.D07G152100' => 'ghi', 'Gohir.D08G192600' => 'ghi', 'Gohir.D09G189200' => 'ghi', 'Gohir.D10G212000' => 'ghi', 'Gohir.D11G085200' => 'ghi', 'Gohir.D11G346400' => 'ghi', 'Gohir.D12G104800' => 'ghi', 'Gorai.001G151300' => 'gra', 'Gorai.001G174100' => 'gra', 'Gorai.002G257000' => 'gra', 'Gorai.004G202600' => 'gra', 'Gorai.007G090900' => 'gra', 'Gorai.007G376700' => 'gra', 'Gorai.008G114100' => 'gra', 'Gorai.011G237900' => 'gra', 'GSVIVG01005450001' => 'vvi', 'GSVIVG01016232001' => 'vvi', 'GSVIVG01026157001' => 'vvi', 'GSVIVG01027419001' => 'vvi', 'GSVIVG01027631001' => 'vvi', 'GSVIVG01034143001' => 'vvi', 'HanXRQChr03g0093921' => 'han', 'HanXRQChr04g0120001' => 'han', 'HanXRQChr04g0122561' => 'han', 'HanXRQChr09g0246851' => 'han', 'HanXRQChr10g0293311' => 'han', 'HanXRQChr13g0425231' => 'han', 'HanXRQChr16g0532571' => 'han', 'Haze_09050' => 'cav', 'Haze_15715' => 'cav', 'Haze_15716' => 'cav', 'Haze_16803' => 'cav', 'Haze_16850' => 'cav', 'Hma1.2p1_0301F.1_g118655' => 'hma', 'Hma1.2p1_0309F.1_g120590' => 'hma', 'Hma1.2p1_0936F.1_g238900' => 'hma', 'Hma1.2p1_3552F.1_g336740' => 'hma', 'HPP92_003520' => 'vpl', 'HPP92_006628' => 'vpl', 'HPP92_006645' => 'vpl', 'HPP92_014669' => 'vpl', 'HPP92_015077' => 'vpl', 'Hund16742' => 'sun', 'Hund17022' => 'sun', 'Lalb_Chr02g0152131' => 'lal', 'Lalb_Chr05g0225371' => 'lal', 'Lalb_Chr07g0189841' => 'lal', 'Lalb_Chr07g0192961' => 'lal', 'Lalb_Chr12g0208221' => 'lal', 'Lalb_Chr13g0291211' => 'lal', 'Lalb_Chr13g0291781' => 'lal', 'Lalb_Chr18g0044651' => 'lal', 'Lalb_Chr21g0313731' => 'lal', 'Lj1g0022533' => 'lja', 'Lj2A18T50' => 'lonja', 'Lj2A92G93' => 'lonja', 'Lj3A965T73' => 'lonja', 'Lj3g0000673' => 'lja', 'Lj3g0002666' => 'lja', 'Lj4g0016985' => 'lja', 'Lj5g0003625' => 'lja', 'Lj7A529G36' => 'lonja', 'Lj9A569T49' => 'lonja', 'Lj9A604T63' => 'lonja', 'Lsat_1_v5_gn_3_132060' => 'lsa', 'Lsat_1_v5_gn_4_68941' => 'lsa', 'Lsat_1_v5_gn_5_95580' => 'lsa', 'Lsat_1_v5_gn_7_161' => 'lsa', 'Lsat_1_v5_gn_7_7041' => 'lsa', 'Lsat_1_v5_gn_9_33481' => 'lsa', 'Lsat_1_v5_gn_9_68260' => 'lsa', 'Manes.01G073100' => 'mes', 'Manes.01G266300' => 'mes', 'Manes.02G033300' => 'mes', 'Manes.05G017900' => 'mes', 'Manes.05G046100' => 'mes', 'Manes.08G080900' => 'mes', 'Manes.10G049400' => 'mes', 'Mapoly0009s0186' => 'mpo', 'Mapoly0036s0118' => 'mpo', 'Mapoly0101s0046' => 'mpo', 'MBI04_g30218_MAGBIO' => 'mbi', 'MBI04_g35564_MAGBIO' => 'mbi', 'MBI12_g34011_MAGBIO' => 'mbi', 'MBI14_g04655_MAGBIO' => 'mbi', 'MCO07G653' => 'mco', 'MCO10G173' => 'mco', 'MD01G1087100' => 'mdo', 'MD01G1104200' => 'mdo', 'MD02G1205100' => 'mdo', 'MD04G1079200' => 'mdo', 'MD04G1131400' => 'mdo', 'MD07G1121600' => 'mdo', 'MD07G1157300' => 'mdo', 'MD07G1171000' => 'mdo', 'MD12G1144500' => 'mdo', 'Medtr1g094610' => 'mtr', 'Medtr4g021795' => 'mtr', 'Medtr4g023760' => 'mtr', 'Medtr7g118050' => 'mtr', 'MELO3C005582.2' => 'cme', 'MELO3C005989.2' => 'cme', 'MELO3C006192.2' => 'cme', 'MELO3C009248.2' => 'cme', 'MELO3C019817.2' => 'cme', 'Migut.B01625' => 'egut', 'Migut.B01915' => 'egut', 'Migut.F01721' => 'egut', 'Migut.J00314' => 'egut', 'MSTRG.20742' => 'ama', 'MSTRG.8134' => 'ama', 'Nitab4.5_0000096g0010' => 'nta', 'Nitab4.5_0000202g0030' => 'nta', 'Nitab4.5_0000216g0370' => 'nta', 'Nitab4.5_0000457g0230' => 'nta', 'Nitab4.5_0001702g0170' => 'nta', 'Nitab4.5_0003607g0010' => 'nta', 'Nitab4.5_0004917g0020' => 'nta', 'Nitab4.5_0007059g0010' => 'nta', 'Nitab4.5_0007184g0010' => 'nta', 'Nitab4.5_0007346g0020' => 'nta', 'Nn1g00410' => 'nnu', 'Nn1g01252' => 'nnu', 'Nn2g11168' => 'nnu', 'Nn2g13403' => 'nnu', 'Nn2g13760' => 'nnu', 'Nn4g26380' => 'nnu', 'Oeu000806.2' => 'oeu', 'Oeu005788.1' => 'oeu', 'Oeu006900.3' => 'oeu', 'Oeu007797.1' => 'oeu', 'Oeu011932.1' => 'oeu', 'Oeu022739.1' => 'oeu', 'Oeu037918.1' => 'oeu', 'Oeu055490.2' => 'oeu', 'Os01g0844400' => 'osa', 'Os02g0819100' => 'osa', 'Os03g0804300' => 'osa', 'Os05g0458000' => 'osa', 'Os07g0467800' => 'osa', 'Os12g0602200' => 'osa', 'Peaxi162Scf00013g03444' => 'pax', 'Peaxi162Scf00094g01120' => 'pax', 'Peaxi162Scf00191g01211' => 'pax', 'Peaxi162Scf00238g01110' => 'pax', 'Peaxi162Scf00330g00719' => 'pax', 'Peaxi162Scf00627g00018' => 'pax', 'PGR031G2686' => 'pgr', 'PGR042G0809' => 'pgr', 'PGR142G0193' => 'pgr', 'PGSC0003DMG400011066' => 'stu', 'PGSC0003DMG400012041' => 'stu', 'PGSC0003DMG400013678' => 'stu', 'PGSC0003DMG400023477' => 'stu', 'PGSC0003DMG400025956' => 'stu', 'PGSC0003DMG401019151' => 'stu', 'Phvul.006G116400' => 'pvu', 'Phvul.007G097300' => 'pvu', 'Phvul.010G015000' => 'pvu', 'Phvul.010G083900' => 'pvu', 'Potri.001G117100' => 'ptr', 'Potri.002G147300' => 'ptr', 'Potri.003G115600' => 'ptr', 'Potri.006G087400' => 'ptr', 'Potri.010G226100' => 'ptr', 'Potri.014G069200' => 'ptr', 'Potri.014G104000' => 'ptr', 'Potri.016G100200' => 'ptr', 'Pp3c10_20450' => 'ppa', 'Pp3c1_42400' => 'ppa', 'Pp3c3_24390' => 'ppa', 'Pp3c3_2860' => 'ppa', 'PRCOL_00003193' => 'pco', 'Prupe.2G144500' => 'ppe', 'Prupe.2G195700' => 'ppe', 'Prupe.2G209800' => 'ppe', 'Prupe.5G080000' => 'ppe', 'Prupe.6G257900' => 'ppe', 'Psat3g001160' => 'psa', 'Psat6g181880' => 'psa', 'Psat7g233720' => 'psa', 'PSO063G7587' => 'pso', 'PSO339G2145' => 'pso', 'PSO339G3369' => 'pso', 'PSO478G2747' => 'pso', 'PSO513G0140' => 'pso', 'PSO782G1614' => 'pso', 'PSO782G4889' => 'pso', 'PSO782G5485' => 'pso', 'PSO801G0241' => 'pso', 'QL07p048854' => 'qlo', 'QL08p046745' => 'qlo', 'QL08p052606' => 'qlo', 'QL08p053414' => 'qlo', 'QL08p054868' => 'qlo', 'RcHm_v2.0_Chr1g0350251' => 'rch', 'RcHm_v2.0_Chr1g0360851' => 'rch', 'RcHm_v2.0_Chr1g0362791' => 'rch', 'RcHm_v2.0_Chr3g0466281' => 'rch', 'RcHm_v2.0_Chr7g0201481' => 'rch', 'Rhsim01G0148600' => 'rsi', 'Rhsim05G0194400' => 'rsi', 'Rhsim07G0000700' => 'rsi', 'Rhsim07G0000800' => 'rsi', 'Rhsim07G0027900' => 'rsi', 'Rhsim09G0149500' => 'rsi', 'RhsimUnG0186900' => 'rsi', 'Sabra01G0089900' => 'sbr', 'Sabra02G0114700' => 'sbr', 'Sabra02G0116300' => 'sbr', 'Sabra03G0080100' => 'sbr', 'Sabra08G0024300' => 'sbr', 'Sabra10G0174300' => 'sbr', 'Sabra14G0048900' => 'sbr', 'Sabra14G0076500' => 'sbr', 'SalBow5G2513' => 'sbo', 'Sc01g0002300' => 'sci', 'Sc01g0004450' => 'sci', 'Sc06g0001680' => 'sci', 'Sc23g0003580' => 'sci', 'Sed0000913' => 'sed', 'Sed0001655' => 'sed', 'Sed0007745' => 'sed', 'Sed0010951' => 'sed', 'Sed0017599' => 'sed', 'Sed0021405' => 'sed', 'Sed0022810' => 'sed', 'SEGI_07099' => 'sgi', 'SEGI_11931' => 'sgi', 'SEGI_13187' => 'sgi', 'SEGI_29958' => 'sgi', 'SEGI_36351' => 'sgi', 'SGA_v2.0_scaffold126G33770' => 'sas', 'SGA_v2.0_scaffold153G37003' => 'sas', 'SGA_v2.0_scaffold2G01359' => 'sas', 'SGA_v2.0_scaffold5G03064' => 'sas', 'SGA_v2.0_scaffold95G28903' => 'sas', 'SHI12701' => 'shi', 'SHI26410' => 'shi', 'SHI38997' => 'shi', 'SHI53759' => 'shi', 'SHI53886' => 'shi', 'SHI54714' => 'shi', 'SMO011G0041' => 'smo', 'SMO146G0251' => 'smo', 'SMO160G0004' => 'smo', 'SMO174G0057' => 'smo', 'SMO244G0089' => 'smo', 'SMO296G0011' => 'smo', 'Solyc01g091280.3' => 'sly', 'Solyc05g047610.3' => 'sly', 'Solyc05g047640.3' => 'sly', 'Solyc05g055630.3' => 'sly', 'Solyc10g018160.2' => 'sly', 'Solyc10g084820.2' => 'sly', 'Solyc10g086565.2' => 'sly', 'Sopen01g037030' => 'spe', 'Sopen05g027920' => 'spe', 'Sopen05g034070' => 'spe', 'Sopen10g007260' => 'spe', 'Sopen10g034260' => 'spe', 'Sopen10g035950' => 'spe', 'Sp3g07710' => 'spa', 'Sp4g27420' => 'spa', 'Sp5g02450' => 'spa', 'Sp6g01280' => 'spa', 'Sp6g38480' => 'spa', 'Sp7g20780' => 'spa', 'TAR374G1413' => 'tar', 'TAR623G1777' => 'tar', 'TAR629G2370' => 'tar', 'TAR633G1759' => 'tar', 'TAR636G3387' => 'tar', 'THA.LOC104802447' => 'tha', 'THA.LOC104813916' => 'tha', 'THA.LOC104816423' => 'tha', 'THA.LOC104817246' => 'tha', 'THA.LOC104825895' => 'tha', 'Thecc.01G335200' => 'tca', 'Thecc.01G377400' => 'tca', 'Thecc.03G262200' => 'tca', 'Thecc.05G036800' => 'tca', 'Thecc.10G080500' => 'tca', 'Thecc.10G080800' => 'tca', 'Thhalv10001560m.g' => 'esa', 'Thhalv10006120m.g' => 'esa', 'Thhalv10014375m.g' => 'esa', 'Thhalv10021264m.g' => 'esa', 'Thhalv10028856m.g' => 'esa', 'TPR.G1914' => 'tpr', 'TPR.G4757' => 'tpr', 'TPR.G5595' => 'tpr', 'TWI14G0952' => 'twi', 'TWI14G1307' => 'twi', 'TWI38G2143' => 'twi', 'TWI59G0826' => 'twi', 'TWI77G0527' => 'twi', 'TWI81G0150' => 'twi', 'unitig_21.g21018' => 'ugi', 'unitig_26.g9725' => 'ugi', 'unitig_744.g24653' => 'ugi', 'unitig_749.g13778' => 'ugi', 'unitig_899.g15035' => 'ugi', 'vmacro04296' => 'vma', 'vmacro04852' => 'vma', 'vmacro13404' => 'vma', 'vmacro20169' => 'vma', 'vmacro21014' => 'vma', 'VMungo0331G0237' => 'vmu', 'VMungo0331G0706' => 'vmu', 'VMungo0331G1361' => 'vmu', 'VMungo0331G1489' => 'vmu', 'VMungo0540G1037' => 'vmu', 'VMungo0720G2487' => 'vmu', 'VMungo0720G2721' => 'vmu', 'Zm00001eb086860' => 'zma', 'Zm00001eb104760' => 'zma', 'Zm00001eb148220' => 'zma', 'Zm00001eb259030' => 'zma', 'Zm00001eb289590' => 'zma', 'Zm00001eb420150' => 'zma' ), 'gf_id' => 'HOM05D000968', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000968' ), 'data_identifier' => 'HOM05D000968', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000968', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p31690' => 'bna', 'A03p36040' => 'bna', 'A03p53730' => 'bna', 'A04p01410' => 'bna', 'A05p05420' => 'bna', 'A05p39630' => 'bna', 'A05p39640' => 'bna', 'A09p00970' => 'bna', 'A09p53060' => 'bna', 'A10p31890' => 'bna', 'Aa31LG10G15040' => 'aar', 'Aa31LG1G21090' => 'aar', 'Aa31LG1G26900' => 'aar', 'Aa31LG3G1820' => 'aar', 'Aa31LG5G1100' => 'aar', 'Aa31LG6G4740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2265' => 'aag', 'Actinidia07998' => 'ach', 'Actinidia11266' => 'ach', 'Actinidia12682' => 'ach', 'Actinidia26479' => 'ach', 'Actinidia31406' => 'ach', 'Actinidia32437' => 'ach', 'Actinidia38862' => 'ach', 'Ah.05g174230' => 'amhyb', 'Ah.05g179070' => 'amhyb', 'Ah.05g179090' => 'amhyb', 'Ah.12g059950' => 'amhyb', 'AL3G20480' => 'aly', 'AL4G44520' => 'aly', 'AL5G43110' => 'aly', 'AL6G13890' => 'aly', 'AL6G52620' => 'aly', 'AL7G30830' => 'aly', 'Aqoxy1G00899' => 'aox', 'Aqoxy5G04333' => 'aox', 'Aqoxy7G00641' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3IZ0NN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4EF6AW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W9P8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79GA3M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C43NQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFCU6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G95YVJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCHK29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LU1UG8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX91RN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGB4B1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8DA0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9H7JI' => 'arhy', 'AT3G09320' => 'ath', 'AT3G60800' => 'ath', 'AT4G00840' => 'ath', 'AT4G22750' => 'ath', 'AT5G04270' => 'ath', 'ATR0090G003' => 'atr', 'ATR0559G349' => 'atr', 'ATR0680G261' => 'atr', 'ATR0810G048' => 'atr', 'Atru.chr12.831' => 'acertr', 'Atru.chr5.303' => 'acertr', 'Atru.chr5.748' => 'acertr', 'Atru.chr8.1999' => 'acertr', 'Atru.chr9.1436' => 'acertr', 'AUR62004211' => 'cqu', 'AUR62004548' => 'cqu', 'AUR62013637' => 'cqu', 'AUR62022662' => 'cqu', 'AUR62025777' => 'cqu', 'AUR62042386' => 'cqu', 'BcaB01g02310' => 'bca', 'BcaB01g06062' => 'bca', 'BcaB02g08975' => 'bca', 'BcaB02g08980' => 'bca', 'BcaC01g04228' => 'bca', 'BcaC01g06830' => 'bca', 'BcaC02g10186' => 'bca', 'BcaC02g12214' => 'bca', 'BcaC04g24101' => 'bca', 'BcaC05g29520' => 'bca', 'BcaC05g29661' => 'bca', 'BcaC06g32130' => 'bca', 'BcaC06g32131' => 'bca', 'BcaC07g40601' => 'bca', 'BcaC07g42641' => 'bca', 'BcaNung01038' => 'bca', 'BcaNung01676' => 'bca', 'BcaNung02480' => 'bca', 'BcaNung07376' => 'bca', 'BolC3t16146H' => 'bol', 'BolC3t16637H' => 'bol', 'BolC4t22257H' => 'bol', 'BolC4t24728H' => 'bol', 'BolC5t34517H' => 'bol', 'BolC7t45703H' => 'bol', 'BolC8t51166H' => 'bol', 'BolC9t53038H' => 'bol', 'BolC9t60000H' => 'bol', 'BraA01t01345Z' => 'bra', 'BraA01t01346Z' => 'bra', 'BraA01t01348Z' => 'bra', 'BraA03t12347Z' => 'bra', 'BraA03t12775Z' => 'bra', 'BraA03t14439Z' => 'bra', 'BraA04t15860Z' => 'bra', 'BraA05t19511Z' => 'bra', 'BraA05t22746Z' => 'bra', 'BraA09t35767Z' => 'bra', 'BraA09t40732Z' => 'bra', 'BraA10t45233Z' => 'bra', 'C03p38720' => 'bna', 'C03p43680' => 'bna', 'C04p06350' => 'bna', 'C04p31800' => 'bna', 'C05p58680' => 'bna', 'C07p52110' => 'bna', 'C08p35760' => 'bna', 'C09p01050' => 'bna', 'C09p72600' => 'bna', 'CAN.G106.2' => 'can', 'CAN.G1482.1' => 'can', 'CAN.G324.12' => 'can', 'CAN.G388.20' => 'can', 'CAN.G412.7' => 'can', 'CAN.G694.32' => 'can', 'CAN.G92.12' => 'can', 'CANSAT11G2353' => 'cansat', 'CANSAT21G1398' => 'cansat', 'CANSAT56G2456' => 'cansat', 'CANSAT56G3031' => 'cansat', 'CANSAT56G4539' => 'cansat', 'CARHR083680' => 'chi', 'CARHR171190' => 'chi', 'CARHR209010' => 'chi', 'CARHR229680' => 'chi', 'CARHR249490' => 'chi', 'Carub.0003s0844' => 'cru', 'Carub.0005s2755' => 'cru', 'Carub.0006s0322' => 'cru', 'Carub.0006s3586' => 'cru', 'Carub.0007s1855' => 'cru', 'Ca_07808_v3' => 'car', 'Ca_09535_v3' => 'car', 'Ca_10548_v3' => 'car', 'Ca_19913_v3' => 'car', 'Ca_19916_v3' => 'car', 'Ca_19975_v3' => 'car', 'CBR_g22876' => 'cbr', 'CBR_g22879' => 'cbr', 'CBR_g38491' => 'cbr', 'CBR_g54185' => 'cbr', 'CBR_g54190' => 'cbr', 'Cc02_g11020' => 'ccan', 'Cc02_g23920' => 'ccan', 'Cc02_g39860' => 'ccan', 'Cc02_g39870' => 'ccan', 'Cc03_g06760' => 'ccan', 'Cc06_g02450' => 'ccan', 'Cc09_g09450' => 'ccan', 'CDE02G1959' => 'cde', 'CDE04G0600' => 'cde', 'CDE07G1996' => 'cde', 'CDE07G2078' => 'cde', 'CDE11G0611' => 'cde', 'Cfa001683' => 'cfa', 'Cfa001734' => 'cfa', 'Cfa001737' => 'cfa', 'Cfa003751' => 'cfa', 'Cfa012019' => 'cfa', 'Cfa017353' => 'cfa', 'Cfa017732' => 'cfa', 'Cfa022464' => 'cfa', 'Ciclev10012400m.g' => 'ccl', 'Ciclev10021242m.g' => 'ccl', 'Ciclev10021302m.g' => 'ccl', 'Ciclev10021463m.g' => 'ccl', 'Ciclev10032359m.g' => 'ccl', 'CiPaw.01G081000' => 'cil', 'CiPaw.01G262500' => 'cil', 'CiPaw.01G269800' => 'cil', 'CiPaw.02G168400' => 'cil', 'CiPaw.05G119500' => 'cil', 'CiPaw.11G147300' => 'cil', 'ClCG01G003630' => 'cla', 'ClCG05G000510' => 'cla', 'ClCG05G002300' => 'cla', 'ClCG08G007650' => 'cla', 'ClCG10G021250' => 'cla', 'COL.COLO4_06218' => 'col', 'COL.COLO4_12538' => 'col', 'COL.COLO4_14775' => 'col', 'COL.COLO4_23875' => 'col', 'Cpa.g.sc141.16' => 'cpa', 'Cpa.g.sc169.16' => 'cpa', 'Cpa.g.sc244.4' => 'cpa', 'Cpa.g.sc244.5' => 'cpa', 'Cpa.g.sc29.87' => 'cpa', 'Cpa.g.sc53.115' => 'cpa', 'Cre03.g207502' => 'cre', 'Cre06.g277000' => 'cre', 'Cre09.g394050' => 'cre', 'CsaV3_3G007680' => 'csa', 'CsaV3_3G009710' => 'csa', 'CsaV3_3G034790' => 'csa', 'CsaV3_5G003750' => 'csa', 'CsaV3_6G036620' => 'csa', 'CSS0002288' => 'camsi', 'CSS0011250' => 'camsi', 'CSS0021619' => 'camsi', 'CSS0046701' => 'camsi', 'DCAR_006420' => 'dca', 'DCAR_006865' => 'dca', 'DCAR_008558' => 'dca', 'DCAR_028754' => 'dca', 'DCAR_028755' => 'dca', 'Dinv31218' => 'din', 'Dinv32371' => 'din', 'Dinv34250' => 'din', 'Dinv37156' => 'din', 'Dinv43704' => 'din', 'Duzib093G1811' => 'dzi', 'Duzib106G1622' => 'dzi', 'Duzib114G0504' => 'dzi', 'Duzib128G0338' => 'dzi', 'Duzib128G1577' => 'dzi', 'Duzib133G0104' => 'dzi', 'Duzib133G1080' => 'dzi', 'Duzib138G0324' => 'dzi', 'Duzib138G0394' => 'dzi', 'Duzib205G0122' => 'dzi', 'Duzib268G1020' => 'dzi', 'Duzib268G1359' => 'dzi', 'ECA232G3929' => 'eca', 'ECA236G2210' => 'eca', 'ECA236G2287' => 'eca', 'ECA240G4568' => 'eca', 'ECA247G0894' => 'eca', 'EL10Ac1g00200' => 'bvu', 'EL10Ac1g00886' => 'bvu', 'EL10As1g23091' => 'bvu', 'EL10As1g23092' => 'bvu', 'Eucgr.A01284' => 'egr', 'Eucgr.A01285' => 'egr', 'Eucgr.D02456' => 'egr', 'Eucgr.E00018' => 'egr', 'Eucgr.E01439' => 'egr', 'Eucgr.G02859' => 'egr', 'FAN01G0168' => 'fan', 'FAN01G0453' => 'fan', 'FAN01G2761' => 'fan', 'FAN02G1239' => 'fan', 'FAN03G0645' => 'fan', 'FAN03G2707' => 'fan', 'FAN03G2978' => 'fan', 'FAN04G0227' => 'fan', 'FAN06G0091' => 'fan', 'FAN06G1418' => 'fan', 'FAN06G1512' => 'fan', 'FAN06G1986' => 'fan', 'FAN06G2905' => 'fan', 'FAN06G4325' => 'fan', 'FAN08G0033' => 'fan', 'FAN09G0642' => 'fan', 'FAN10G1763' => 'fan', 'FAN10G2026' => 'fan', 'FAN10G2513' => 'fan', 'FAN10G3402' => 'fan', 'FAN10G3564' => 'fan', 'FAN10G3987' => 'fan', 'FAN13G1490' => 'fan', 'FAN14G5857' => 'fan', 'FAN18G1188' => 'fan', 'FvH4_5g00750' => 'fve', 'FvH4_6g13410' => 'fve', 'FvH4_7g11740' => 'fve', 'FvH4_7g17410' => 'fve', 'FvH4_7g18860' => 'fve', 'Glyma.01G099100' => 'gma', 'Glyma.01G142300' => 'gma', 'Glyma.03G025500' => 'gma', 'Glyma.03G069700' => 'gma', 'Glyma.03G260000' => 'gma', 'Glyma.09G269800' => 'gma', 'Glyma.10G208700' => 'gma', 'Glyma.18G220400' => 'gma', 'Glyma.20G182000' => 'gma', 'Gohir.A01G221726' => 'ghi', 'Gohir.A07G134600' => 'ghi', 'Gohir.A07G146000' => 'ghi', 'Gohir.A08G173900' => 'ghi', 'Gohir.A09G194900' => 'ghi', 'Gohir.A10G204100' => 'ghi', 'Gohir.A11G080600' => 'ghi', 'Gohir.A11G327500' => 'ghi', 'Gohir.A12G101800' => 'ghi', 'Gohir.D01G211200' => 'ghi', 'Gohir.D07G139200' => 'ghi', 'Gohir.D07G152100' => 'ghi', 'Gohir.D08G192600' => 'ghi', 'Gohir.D09G189200' => 'ghi', 'Gohir.D10G212000' => 'ghi', 'Gohir.D11G085200' => 'ghi', 'Gohir.D11G346400' => 'ghi', 'Gohir.D12G104800' => 'ghi', 'Gorai.001G151300' => 'gra', 'Gorai.001G174100' => 'gra', 'Gorai.002G257000' => 'gra', 'Gorai.004G202600' => 'gra', 'Gorai.007G090900' => 'gra', 'Gorai.007G376700' => 'gra', 'Gorai.008G114100' => 'gra', 'Gorai.011G237900' => 'gra', 'GSVIVG01005450001' => 'vvi', 'GSVIVG01016232001' => 'vvi', 'GSVIVG01026157001' => 'vvi', 'GSVIVG01027419001' => 'vvi', 'GSVIVG01027631001' => 'vvi', 'GSVIVG01034143001' => 'vvi', 'HanXRQChr03g0093921' => 'han', 'HanXRQChr04g0120001' => 'han', 'HanXRQChr04g0122561' => 'han', 'HanXRQChr09g0246851' => 'han', 'HanXRQChr10g0293311' => 'han', 'HanXRQChr13g0425231' => 'han', 'HanXRQChr16g0532571' => 'han', 'Haze_09050' => 'cav', 'Haze_15715' => 'cav', 'Haze_15716' => 'cav', 'Haze_16803' => 'cav', 'Haze_16850' => 'cav', 'Hma1.2p1_0301F.1_g118655' => 'hma', 'Hma1.2p1_0309F.1_g120590' => 'hma', 'Hma1.2p1_0936F.1_g238900' => 'hma', 'Hma1.2p1_3552F.1_g336740' => 'hma', 'HPP92_003520' => 'vpl', 'HPP92_006628' => 'vpl', 'HPP92_006645' => 'vpl', 'HPP92_014669' => 'vpl', 'HPP92_015077' => 'vpl', 'Hund16742' => 'sun', 'Hund17022' => 'sun', 'Lalb_Chr02g0152131' => 'lal', 'Lalb_Chr05g0225371' => 'lal', 'Lalb_Chr07g0189841' => 'lal', 'Lalb_Chr07g0192961' => 'lal', 'Lalb_Chr12g0208221' => 'lal', 'Lalb_Chr13g0291211' => 'lal', 'Lalb_Chr13g0291781' => 'lal', 'Lalb_Chr18g0044651' => 'lal', 'Lalb_Chr21g0313731' => 'lal', 'Lj1g0022533' => 'lja', 'Lj2A18T50' => 'lonja', 'Lj2A92G93' => 'lonja', 'Lj3A965T73' => 'lonja', 'Lj3g0000673' => 'lja', 'Lj3g0002666' => 'lja', 'Lj4g0016985' => 'lja', 'Lj5g0003625' => 'lja', 'Lj7A529G36' => 'lonja', 'Lj9A569T49' => 'lonja', 'Lj9A604T63' => 'lonja', 'Lsat_1_v5_gn_3_132060' => 'lsa', 'Lsat_1_v5_gn_4_68941' => 'lsa', 'Lsat_1_v5_gn_5_95580' => 'lsa', 'Lsat_1_v5_gn_7_161' => 'lsa', 'Lsat_1_v5_gn_7_7041' => 'lsa', 'Lsat_1_v5_gn_9_33481' => 'lsa', 'Lsat_1_v5_gn_9_68260' => 'lsa', 'Manes.01G073100' => 'mes', 'Manes.01G266300' => 'mes', 'Manes.02G033300' => 'mes', 'Manes.05G017900' => 'mes', 'Manes.05G046100' => 'mes', 'Manes.08G080900' => 'mes', 'Manes.10G049400' => 'mes', 'Mapoly0009s0186' => 'mpo', 'Mapoly0036s0118' => 'mpo', 'Mapoly0101s0046' => 'mpo', 'MBI04_g30218_MAGBIO' => 'mbi', 'MBI04_g35564_MAGBIO' => 'mbi', 'MBI12_g34011_MAGBIO' => 'mbi', 'MBI14_g04655_MAGBIO' => 'mbi', 'MCO07G653' => 'mco', 'MCO10G173' => 'mco', 'MD01G1087100' => 'mdo', 'MD01G1104200' => 'mdo', 'MD02G1205100' => 'mdo', 'MD04G1079200' => 'mdo', 'MD04G1131400' => 'mdo', 'MD07G1121600' => 'mdo', 'MD07G1157300' => 'mdo', 'MD07G1171000' => 'mdo', 'MD12G1144500' => 'mdo', 'Medtr1g094610' => 'mtr', 'Medtr4g021795' => 'mtr', 'Medtr4g023760' => 'mtr', 'Medtr7g118050' => 'mtr', 'MELO3C005582.2' => 'cme', 'MELO3C005989.2' => 'cme', 'MELO3C006192.2' => 'cme', 'MELO3C009248.2' => 'cme', 'MELO3C019817.2' => 'cme', 'Migut.B01625' => 'egut', 'Migut.B01915' => 'egut', 'Migut.F01721' => 'egut', 'Migut.J00314' => 'egut', 'MSTRG.20742' => 'ama', 'MSTRG.8134' => 'ama', 'Nitab4.5_0000096g0010' => 'nta', 'Nitab4.5_0000202g0030' => 'nta', 'Nitab4.5_0000216g0370' => 'nta', 'Nitab4.5_0000457g0230' => 'nta', 'Nitab4.5_0001702g0170' => 'nta', 'Nitab4.5_0003607g0010' => 'nta', 'Nitab4.5_0004917g0020' => 'nta', 'Nitab4.5_0007059g0010' => 'nta', 'Nitab4.5_0007184g0010' => 'nta', 'Nitab4.5_0007346g0020' => 'nta', 'Nn1g00410' => 'nnu', 'Nn1g01252' => 'nnu', 'Nn2g11168' => 'nnu', 'Nn2g13403' => 'nnu', 'Nn2g13760' => 'nnu', 'Nn4g26380' => 'nnu', 'Oeu000806.2' => 'oeu', 'Oeu005788.1' => 'oeu', 'Oeu006900.3' => 'oeu', 'Oeu007797.1' => 'oeu', 'Oeu011932.1' => 'oeu', 'Oeu022739.1' => 'oeu', 'Oeu037918.1' => 'oeu', 'Oeu055490.2' => 'oeu', 'Os01g0844400' => 'osa', 'Os02g0819100' => 'osa', 'Os03g0804300' => 'osa', 'Os05g0458000' => 'osa', 'Os07g0467800' => 'osa', 'Os12g0602200' => 'osa', 'Peaxi162Scf00013g03444' => 'pax', 'Peaxi162Scf00094g01120' => 'pax', 'Peaxi162Scf00191g01211' => 'pax', 'Peaxi162Scf00238g01110' => 'pax', 'Peaxi162Scf00330g00719' => 'pax', 'Peaxi162Scf00627g00018' => 'pax', 'PGR031G2686' => 'pgr', 'PGR042G0809' => 'pgr', 'PGR142G0193' => 'pgr', 'PGSC0003DMG400011066' => 'stu', 'PGSC0003DMG400012041' => 'stu', 'PGSC0003DMG400013678' => 'stu', 'PGSC0003DMG400023477' => 'stu', 'PGSC0003DMG400025956' => 'stu', 'PGSC0003DMG401019151' => 'stu', 'Phvul.006G116400' => 'pvu', 'Phvul.007G097300' => 'pvu', 'Phvul.010G015000' => 'pvu', 'Phvul.010G083900' => 'pvu', 'Potri.001G117100' => 'ptr', 'Potri.002G147300' => 'ptr', 'Potri.003G115600' => 'ptr', 'Potri.006G087400' => 'ptr', 'Potri.010G226100' => 'ptr', 'Potri.014G069200' => 'ptr', 'Potri.014G104000' => 'ptr', 'Potri.016G100200' => 'ptr', 'Pp3c10_20450' => 'ppa', 'Pp3c1_42400' => 'ppa', 'Pp3c3_24390' => 'ppa', 'Pp3c3_2860' => 'ppa', 'PRCOL_00003193' => 'pco', 'Prupe.2G144500' => 'ppe', 'Prupe.2G195700' => 'ppe', 'Prupe.2G209800' => 'ppe', 'Prupe.5G080000' => 'ppe', 'Prupe.6G257900' => 'ppe', 'Psat3g001160' => 'psa', 'Psat6g181880' => 'psa', 'Psat7g233720' => 'psa', 'PSO063G7587' => 'pso', 'PSO339G2145' => 'pso', 'PSO339G3369' => 'pso', 'PSO478G2747' => 'pso', 'PSO513G0140' => 'pso', 'PSO782G1614' => 'pso', 'PSO782G4889' => 'pso', 'PSO782G5485' => 'pso', 'PSO801G0241' => 'pso', 'QL07p048854' => 'qlo', 'QL08p046745' => 'qlo', 'QL08p052606' => 'qlo', 'QL08p053414' => 'qlo', 'QL08p054868' => 'qlo', 'RcHm_v2.0_Chr1g0350251' => 'rch', 'RcHm_v2.0_Chr1g0360851' => 'rch', 'RcHm_v2.0_Chr1g0362791' => 'rch', 'RcHm_v2.0_Chr3g0466281' => 'rch', 'RcHm_v2.0_Chr7g0201481' => 'rch', 'Rhsim01G0148600' => 'rsi', 'Rhsim05G0194400' => 'rsi', 'Rhsim07G0000700' => 'rsi', 'Rhsim07G0000800' => 'rsi', 'Rhsim07G0027900' => 'rsi', 'Rhsim09G0149500' => 'rsi', 'RhsimUnG0186900' => 'rsi', 'Sabra01G0089900' => 'sbr', 'Sabra02G0114700' => 'sbr', 'Sabra02G0116300' => 'sbr', 'Sabra03G0080100' => 'sbr', 'Sabra08G0024300' => 'sbr', 'Sabra10G0174300' => 'sbr', 'Sabra14G0048900' => 'sbr', 'Sabra14G0076500' => 'sbr', 'SalBow5G2513' => 'sbo', 'Sc01g0002300' => 'sci', 'Sc01g0004450' => 'sci', 'Sc06g0001680' => 'sci', 'Sc23g0003580' => 'sci', 'Sed0000913' => 'sed', 'Sed0001655' => 'sed', 'Sed0007745' => 'sed', 'Sed0010951' => 'sed', 'Sed0017599' => 'sed', 'Sed0021405' => 'sed', 'Sed0022810' => 'sed', 'SEGI_07099' => 'sgi', 'SEGI_11931' => 'sgi', 'SEGI_13187' => 'sgi', 'SEGI_29958' => 'sgi', 'SEGI_36351' => 'sgi', 'SGA_v2.0_scaffold126G33770' => 'sas', 'SGA_v2.0_scaffold153G37003' => 'sas', 'SGA_v2.0_scaffold2G01359' => 'sas', 'SGA_v2.0_scaffold5G03064' => 'sas', 'SGA_v2.0_scaffold95G28903' => 'sas', 'SHI12701' => 'shi', 'SHI26410' => 'shi', 'SHI38997' => 'shi', 'SHI53759' => 'shi', 'SHI53886' => 'shi', 'SHI54714' => 'shi', 'SMO011G0041' => 'smo', 'SMO146G0251' => 'smo', 'SMO160G0004' => 'smo', 'SMO174G0057' => 'smo', 'SMO244G0089' => 'smo', 'SMO296G0011' => 'smo', 'Solyc01g091280.3' => 'sly', 'Solyc05g047610.3' => 'sly', 'Solyc05g047640.3' => 'sly', 'Solyc05g055630.3' => 'sly', 'Solyc10g018160.2' => 'sly', 'Solyc10g084820.2' => 'sly', 'Solyc10g086565.2' => 'sly', 'Sopen01g037030' => 'spe', 'Sopen05g027920' => 'spe', 'Sopen05g034070' => 'spe', 'Sopen10g007260' => 'spe', 'Sopen10g034260' => 'spe', 'Sopen10g035950' => 'spe', 'Sp3g07710' => 'spa', 'Sp4g27420' => 'spa', 'Sp5g02450' => 'spa', 'Sp6g01280' => 'spa', 'Sp6g38480' => 'spa', 'Sp7g20780' => 'spa', 'TAR374G1413' => 'tar', 'TAR623G1777' => 'tar', 'TAR629G2370' => 'tar', 'TAR633G1759' => 'tar', 'TAR636G3387' => 'tar', 'THA.LOC104802447' => 'tha', 'THA.LOC104813916' => 'tha', 'THA.LOC104816423' => 'tha', 'THA.LOC104817246' => 'tha', 'THA.LOC104825895' => 'tha', 'Thecc.01G335200' => 'tca', 'Thecc.01G377400' => 'tca', 'Thecc.03G262200' => 'tca', 'Thecc.05G036800' => 'tca', 'Thecc.10G080500' => 'tca', 'Thecc.10G080800' => 'tca', 'Thhalv10001560m.g' => 'esa', 'Thhalv10006120m.g' => 'esa', 'Thhalv10014375m.g' => 'esa', 'Thhalv10021264m.g' => 'esa', 'Thhalv10028856m.g' => 'esa', 'TPR.G1914' => 'tpr', 'TPR.G4757' => 'tpr', 'TPR.G5595' => 'tpr', 'TWI14G0952' => 'twi', 'TWI14G1307' => 'twi', 'TWI38G2143' => 'twi', 'TWI59G0826' => 'twi', 'TWI77G0527' => 'twi', 'TWI81G0150' => 'twi', 'unitig_21.g21018' => 'ugi', 'unitig_26.g9725' => 'ugi', 'unitig_744.g24653' => 'ugi', 'unitig_749.g13778' => 'ugi', 'unitig_899.g15035' => 'ugi', 'vmacro04296' => 'vma', 'vmacro04852' => 'vma', 'vmacro13404' => 'vma', 'vmacro20169' => 'vma', 'vmacro21014' => 'vma', 'VMungo0331G0237' => 'vmu', 'VMungo0331G0706' => 'vmu', 'VMungo0331G1361' => 'vmu', 'VMungo0331G1489' => 'vmu', 'VMungo0540G1037' => 'vmu', 'VMungo0720G2487' => 'vmu', 'VMungo0720G2721' => 'vmu', 'Zm00001eb086860' => 'zma', 'Zm00001eb104760' => 'zma', 'Zm00001eb148220' => 'zma', 'Zm00001eb259030' => 'zma', 'Zm00001eb289590' => 'zma', 'Zm00001eb420150' => 'zma' ) $gf_id = 'HOM05D000968' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000968' ) $data_identifier = 'HOM05D000968' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 19, 'bol' => (int) 9, 'bra' => (int) 12, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 5, 'ccan' => (int) 7, 'cde' => (int) 5, 'cfa' => (int) 8, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 4, 'dca' => (int) 5, 'din' => (int) 5, 'dzi' => (int) 12, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 25, 'fve' => (int) 5, 'gma' => (int) 9, 'ghi' => (int) 18, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 7, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 5, 'sun' => (int) 2, 'lal' => (int) 9, 'lja' => (int) 5, 'lonja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 9, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 2, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 3, 'stu' => (int) 6, 'pvu' => (int) 4, 'ptr' => (int) 8, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 3, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 1, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 5, 'sas' => (int) 5, 'shi' => (int) 6, 'smo' => (int) 6, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 3, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420150' $species_info = array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ) $local_species = 'aox' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000968', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p31690' => 'bna', 'A03p36040' => 'bna', 'A03p53730' => 'bna', 'A04p01410' => 'bna', 'A05p05420' => 'bna', 'A05p39630' => 'bna', 'A05p39640' => 'bna', 'A09p00970' => 'bna', 'A09p53060' => 'bna', 'A10p31890' => 'bna', 'Aa31LG10G15040' => 'aar', 'Aa31LG1G21090' => 'aar', 'Aa31LG1G26900' => 'aar', 'Aa31LG3G1820' => 'aar', 'Aa31LG5G1100' => 'aar', 'Aa31LG6G4740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2265' => 'aag', 'Actinidia07998' => 'ach', 'Actinidia11266' => 'ach', 'Actinidia12682' => 'ach', 'Actinidia26479' => 'ach', 'Actinidia31406' => 'ach', 'Actinidia32437' => 'ach', 'Actinidia38862' => 'ach', 'Ah.05g174230' => 'amhyb', 'Ah.05g179070' => 'amhyb', 'Ah.05g179090' => 'amhyb', 'Ah.12g059950' => 'amhyb', 'AL3G20480' => 'aly', 'AL4G44520' => 'aly', 'AL5G43110' => 'aly', 'AL6G13890' => 'aly', 'AL6G52620' => 'aly', 'AL7G30830' => 'aly', 'Aqoxy1G00899' => 'aox', 'Aqoxy5G04333' => 'aox', 'Aqoxy7G00641' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3IZ0NN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4EF6AW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W9P8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79GA3M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C43NQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFCU6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G95YVJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCHK29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LU1UG8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX91RN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGB4B1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8DA0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9H7JI' => 'arhy', 'AT3G09320' => 'ath', 'AT3G60800' => 'ath', 'AT4G00840' => 'ath', 'AT4G22750' => 'ath', 'AT5G04270' => 'ath', 'ATR0090G003' => 'atr', 'ATR0559G349' => 'atr', 'ATR0680G261' => 'atr', 'ATR0810G048' => 'atr', 'Atru.chr12.831' => 'acertr', 'Atru.chr5.303' => 'acertr', 'Atru.chr5.748' => 'acertr', 'Atru.chr8.1999' => 'acertr', 'Atru.chr9.1436' => 'acertr', 'AUR62004211' => 'cqu', 'AUR62004548' => 'cqu', 'AUR62013637' => 'cqu', 'AUR62022662' => 'cqu', 'AUR62025777' => 'cqu', 'AUR62042386' => 'cqu', 'BcaB01g02310' => 'bca', 'BcaB01g06062' => 'bca', 'BcaB02g08975' => 'bca', 'BcaB02g08980' => 'bca', 'BcaC01g04228' => 'bca', 'BcaC01g06830' => 'bca', 'BcaC02g10186' => 'bca', 'BcaC02g12214' => 'bca', 'BcaC04g24101' => 'bca', 'BcaC05g29520' => 'bca', 'BcaC05g29661' => 'bca', 'BcaC06g32130' => 'bca', 'BcaC06g32131' => 'bca', 'BcaC07g40601' => 'bca', 'BcaC07g42641' => 'bca', 'BcaNung01038' => 'bca', 'BcaNung01676' => 'bca', 'BcaNung02480' => 'bca', 'BcaNung07376' => 'bca', 'BolC3t16146H' => 'bol', 'BolC3t16637H' => 'bol', 'BolC4t22257H' => 'bol', 'BolC4t24728H' => 'bol', 'BolC5t34517H' => 'bol', 'BolC7t45703H' => 'bol', 'BolC8t51166H' => 'bol', 'BolC9t53038H' => 'bol', 'BolC9t60000H' => 'bol', 'BraA01t01345Z' => 'bra', 'BraA01t01346Z' => 'bra', 'BraA01t01348Z' => 'bra', 'BraA03t12347Z' => 'bra', 'BraA03t12775Z' => 'bra', 'BraA03t14439Z' => 'bra', 'BraA04t15860Z' => 'bra', 'BraA05t19511Z' => 'bra', 'BraA05t22746Z' => 'bra', 'BraA09t35767Z' => 'bra', 'BraA09t40732Z' => 'bra', 'BraA10t45233Z' => 'bra', 'C03p38720' => 'bna', 'C03p43680' => 'bna', 'C04p06350' => 'bna', 'C04p31800' => 'bna', 'C05p58680' => 'bna', 'C07p52110' => 'bna', 'C08p35760' => 'bna', 'C09p01050' => 'bna', 'C09p72600' => 'bna', 'CAN.G106.2' => 'can', 'CAN.G1482.1' => 'can', 'CAN.G324.12' => 'can', 'CAN.G388.20' => 'can', 'CAN.G412.7' => 'can', 'CAN.G694.32' => 'can', 'CAN.G92.12' => 'can', 'CANSAT11G2353' => 'cansat', 'CANSAT21G1398' => 'cansat', 'CANSAT56G2456' => 'cansat', 'CANSAT56G3031' => 'cansat', 'CANSAT56G4539' => 'cansat', 'CARHR083680' => 'chi', 'CARHR171190' => 'chi', 'CARHR209010' => 'chi', 'CARHR229680' => 'chi', 'CARHR249490' => 'chi', 'Carub.0003s0844' => 'cru', 'Carub.0005s2755' => 'cru', 'Carub.0006s0322' => 'cru', 'Carub.0006s3586' => 'cru', 'Carub.0007s1855' => 'cru', 'Ca_07808_v3' => 'car', 'Ca_09535_v3' => 'car', 'Ca_10548_v3' => 'car', 'Ca_19913_v3' => 'car', 'Ca_19916_v3' => 'car', 'Ca_19975_v3' => 'car', 'CBR_g22876' => 'cbr', 'CBR_g22879' => 'cbr', 'CBR_g38491' => 'cbr', 'CBR_g54185' => 'cbr', 'CBR_g54190' => 'cbr', 'Cc02_g11020' => 'ccan', 'Cc02_g23920' => 'ccan', 'Cc02_g39860' => 'ccan', 'Cc02_g39870' => 'ccan', 'Cc03_g06760' => 'ccan', 'Cc06_g02450' => 'ccan', 'Cc09_g09450' => 'ccan', 'CDE02G1959' => 'cde', 'CDE04G0600' => 'cde', 'CDE07G1996' => 'cde', 'CDE07G2078' => 'cde', 'CDE11G0611' => 'cde', 'Cfa001683' => 'cfa', 'Cfa001734' => 'cfa', 'Cfa001737' => 'cfa', 'Cfa003751' => 'cfa', 'Cfa012019' => 'cfa', 'Cfa017353' => 'cfa', 'Cfa017732' => 'cfa', 'Cfa022464' => 'cfa', 'Ciclev10012400m.g' => 'ccl', 'Ciclev10021242m.g' => 'ccl', 'Ciclev10021302m.g' => 'ccl', 'Ciclev10021463m.g' => 'ccl', 'Ciclev10032359m.g' => 'ccl', 'CiPaw.01G081000' => 'cil', 'CiPaw.01G262500' => 'cil', 'CiPaw.01G269800' => 'cil', 'CiPaw.02G168400' => 'cil', 'CiPaw.05G119500' => 'cil', 'CiPaw.11G147300' => 'cil', 'ClCG01G003630' => 'cla', 'ClCG05G000510' => 'cla', 'ClCG05G002300' => 'cla', 'ClCG08G007650' => 'cla', 'ClCG10G021250' => 'cla', 'COL.COLO4_06218' => 'col', 'COL.COLO4_12538' => 'col', 'COL.COLO4_14775' => 'col', 'COL.COLO4_23875' => 'col', 'Cpa.g.sc141.16' => 'cpa', 'Cpa.g.sc169.16' => 'cpa', 'Cpa.g.sc244.4' => 'cpa', 'Cpa.g.sc244.5' => 'cpa', 'Cpa.g.sc29.87' => 'cpa', 'Cpa.g.sc53.115' => 'cpa', 'Cre03.g207502' => 'cre', 'Cre06.g277000' => 'cre', 'Cre09.g394050' => 'cre', 'CsaV3_3G007680' => 'csa', 'CsaV3_3G009710' => 'csa', 'CsaV3_3G034790' => 'csa', 'CsaV3_5G003750' => 'csa', 'CsaV3_6G036620' => 'csa', 'CSS0002288' => 'camsi', 'CSS0011250' => 'camsi', 'CSS0021619' => 'camsi', 'CSS0046701' => 'camsi', 'DCAR_006420' => 'dca', 'DCAR_006865' => 'dca', 'DCAR_008558' => 'dca', 'DCAR_028754' => 'dca', 'DCAR_028755' => 'dca', 'Dinv31218' => 'din', 'Dinv32371' => 'din', 'Dinv34250' => 'din', 'Dinv37156' => 'din', 'Dinv43704' => 'din', 'Duzib093G1811' => 'dzi', 'Duzib106G1622' => 'dzi', 'Duzib114G0504' => 'dzi', 'Duzib128G0338' => 'dzi', 'Duzib128G1577' => 'dzi', 'Duzib133G0104' => 'dzi', 'Duzib133G1080' => 'dzi', 'Duzib138G0324' => 'dzi', 'Duzib138G0394' => 'dzi', 'Duzib205G0122' => 'dzi', 'Duzib268G1020' => 'dzi', 'Duzib268G1359' => 'dzi', 'ECA232G3929' => 'eca', 'ECA236G2210' => 'eca', 'ECA236G2287' => 'eca', 'ECA240G4568' => 'eca', 'ECA247G0894' => 'eca', 'EL10Ac1g00200' => 'bvu', 'EL10Ac1g00886' => 'bvu', 'EL10As1g23091' => 'bvu', 'EL10As1g23092' => 'bvu', 'Eucgr.A01284' => 'egr', 'Eucgr.A01285' => 'egr', 'Eucgr.D02456' => 'egr', 'Eucgr.E00018' => 'egr', 'Eucgr.E01439' => 'egr', 'Eucgr.G02859' => 'egr', 'FAN01G0168' => 'fan', 'FAN01G0453' => 'fan', 'FAN01G2761' => 'fan', 'FAN02G1239' => 'fan', 'FAN03G0645' => 'fan', 'FAN03G2707' => 'fan', 'FAN03G2978' => 'fan', 'FAN04G0227' => 'fan', 'FAN06G0091' => 'fan', 'FAN06G1418' => 'fan', 'FAN06G1512' => 'fan', 'FAN06G1986' => 'fan', 'FAN06G2905' => 'fan', 'FAN06G4325' => 'fan', 'FAN08G0033' => 'fan', 'FAN09G0642' => 'fan', 'FAN10G1763' => 'fan', 'FAN10G2026' => 'fan', 'FAN10G2513' => 'fan', 'FAN10G3402' => 'fan', 'FAN10G3564' => 'fan', 'FAN10G3987' => 'fan', 'FAN13G1490' => 'fan', 'FAN14G5857' => 'fan', 'FAN18G1188' => 'fan', 'FvH4_5g00750' => 'fve', 'FvH4_6g13410' => 'fve', 'FvH4_7g11740' => 'fve', 'FvH4_7g17410' => 'fve', 'FvH4_7g18860' => 'fve', 'Glyma.01G099100' => 'gma', 'Glyma.01G142300' => 'gma', 'Glyma.03G025500' => 'gma', 'Glyma.03G069700' => 'gma', 'Glyma.03G260000' => 'gma', 'Glyma.09G269800' => 'gma', 'Glyma.10G208700' => 'gma', 'Glyma.18G220400' => 'gma', 'Glyma.20G182000' => 'gma', 'Gohir.A01G221726' => 'ghi', 'Gohir.A07G134600' => 'ghi', 'Gohir.A07G146000' => 'ghi', 'Gohir.A08G173900' => 'ghi', 'Gohir.A09G194900' => 'ghi', 'Gohir.A10G204100' => 'ghi', 'Gohir.A11G080600' => 'ghi', 'Gohir.A11G327500' => 'ghi', 'Gohir.A12G101800' => 'ghi', 'Gohir.D01G211200' => 'ghi', 'Gohir.D07G139200' => 'ghi', 'Gohir.D07G152100' => 'ghi', 'Gohir.D08G192600' => 'ghi', 'Gohir.D09G189200' => 'ghi', 'Gohir.D10G212000' => 'ghi', 'Gohir.D11G085200' => 'ghi', 'Gohir.D11G346400' => 'ghi', 'Gohir.D12G104800' => 'ghi', 'Gorai.001G151300' => 'gra', 'Gorai.001G174100' => 'gra', 'Gorai.002G257000' => 'gra', 'Gorai.004G202600' => 'gra', 'Gorai.007G090900' => 'gra', 'Gorai.007G376700' => 'gra', 'Gorai.008G114100' => 'gra', 'Gorai.011G237900' => 'gra', 'GSVIVG01005450001' => 'vvi', 'GSVIVG01016232001' => 'vvi', 'GSVIVG01026157001' => 'vvi', 'GSVIVG01027419001' => 'vvi', 'GSVIVG01027631001' => 'vvi', 'GSVIVG01034143001' => 'vvi', 'HanXRQChr03g0093921' => 'han', 'HanXRQChr04g0120001' => 'han', 'HanXRQChr04g0122561' => 'han', 'HanXRQChr09g0246851' => 'han', 'HanXRQChr10g0293311' => 'han', 'HanXRQChr13g0425231' => 'han', 'HanXRQChr16g0532571' => 'han', 'Haze_09050' => 'cav', 'Haze_15715' => 'cav', 'Haze_15716' => 'cav', 'Haze_16803' => 'cav', 'Haze_16850' => 'cav', 'Hma1.2p1_0301F.1_g118655' => 'hma', 'Hma1.2p1_0309F.1_g120590' => 'hma', 'Hma1.2p1_0936F.1_g238900' => 'hma', 'Hma1.2p1_3552F.1_g336740' => 'hma', 'HPP92_003520' => 'vpl', 'HPP92_006628' => 'vpl', 'HPP92_006645' => 'vpl', 'HPP92_014669' => 'vpl', 'HPP92_015077' => 'vpl', 'Hund16742' => 'sun', 'Hund17022' => 'sun', 'Lalb_Chr02g0152131' => 'lal', 'Lalb_Chr05g0225371' => 'lal', 'Lalb_Chr07g0189841' => 'lal', 'Lalb_Chr07g0192961' => 'lal', 'Lalb_Chr12g0208221' => 'lal', 'Lalb_Chr13g0291211' => 'lal', 'Lalb_Chr13g0291781' => 'lal', 'Lalb_Chr18g0044651' => 'lal', 'Lalb_Chr21g0313731' => 'lal', 'Lj1g0022533' => 'lja', 'Lj2A18T50' => 'lonja', 'Lj2A92G93' => 'lonja', 'Lj3A965T73' => 'lonja', 'Lj3g0000673' => 'lja', 'Lj3g0002666' => 'lja', 'Lj4g0016985' => 'lja', 'Lj5g0003625' => 'lja', 'Lj7A529G36' => 'lonja', 'Lj9A569T49' => 'lonja', 'Lj9A604T63' => 'lonja', 'Lsat_1_v5_gn_3_132060' => 'lsa', 'Lsat_1_v5_gn_4_68941' => 'lsa', 'Lsat_1_v5_gn_5_95580' => 'lsa', 'Lsat_1_v5_gn_7_161' => 'lsa', 'Lsat_1_v5_gn_7_7041' => 'lsa', 'Lsat_1_v5_gn_9_33481' => 'lsa', 'Lsat_1_v5_gn_9_68260' => 'lsa', 'Manes.01G073100' => 'mes', 'Manes.01G266300' => 'mes', 'Manes.02G033300' => 'mes', 'Manes.05G017900' => 'mes', 'Manes.05G046100' => 'mes', 'Manes.08G080900' => 'mes', 'Manes.10G049400' => 'mes', 'Mapoly0009s0186' => 'mpo', 'Mapoly0036s0118' => 'mpo', 'Mapoly0101s0046' => 'mpo', 'MBI04_g30218_MAGBIO' => 'mbi', 'MBI04_g35564_MAGBIO' => 'mbi', 'MBI12_g34011_MAGBIO' => 'mbi', 'MBI14_g04655_MAGBIO' => 'mbi', 'MCO07G653' => 'mco', 'MCO10G173' => 'mco', 'MD01G1087100' => 'mdo', 'MD01G1104200' => 'mdo', 'MD02G1205100' => 'mdo', 'MD04G1079200' => 'mdo', 'MD04G1131400' => 'mdo', 'MD07G1121600' => 'mdo', 'MD07G1157300' => 'mdo', 'MD07G1171000' => 'mdo', 'MD12G1144500' => 'mdo', 'Medtr1g094610' => 'mtr', 'Medtr4g021795' => 'mtr', 'Medtr4g023760' => 'mtr', 'Medtr7g118050' => 'mtr', 'MELO3C005582.2' => 'cme', 'MELO3C005989.2' => 'cme', 'MELO3C006192.2' => 'cme', 'MELO3C009248.2' => 'cme', 'MELO3C019817.2' => 'cme', 'Migut.B01625' => 'egut', 'Migut.B01915' => 'egut', 'Migut.F01721' => 'egut', 'Migut.J00314' => 'egut', 'MSTRG.20742' => 'ama', 'MSTRG.8134' => 'ama', 'Nitab4.5_0000096g0010' => 'nta', 'Nitab4.5_0000202g0030' => 'nta', 'Nitab4.5_0000216g0370' => 'nta', 'Nitab4.5_0000457g0230' => 'nta', 'Nitab4.5_0001702g0170' => 'nta', 'Nitab4.5_0003607g0010' => 'nta', 'Nitab4.5_0004917g0020' => 'nta', 'Nitab4.5_0007059g0010' => 'nta', 'Nitab4.5_0007184g0010' => 'nta', 'Nitab4.5_0007346g0020' => 'nta', 'Nn1g00410' => 'nnu', 'Nn1g01252' => 'nnu', 'Nn2g11168' => 'nnu', 'Nn2g13403' => 'nnu', 'Nn2g13760' => 'nnu', 'Nn4g26380' => 'nnu', 'Oeu000806.2' => 'oeu', 'Oeu005788.1' => 'oeu', 'Oeu006900.3' => 'oeu', 'Oeu007797.1' => 'oeu', 'Oeu011932.1' => 'oeu', 'Oeu022739.1' => 'oeu', 'Oeu037918.1' => 'oeu', 'Oeu055490.2' => 'oeu', 'Os01g0844400' => 'osa', 'Os02g0819100' => 'osa', 'Os03g0804300' => 'osa', 'Os05g0458000' => 'osa', 'Os07g0467800' => 'osa', 'Os12g0602200' => 'osa', 'Peaxi162Scf00013g03444' => 'pax', 'Peaxi162Scf00094g01120' => 'pax', 'Peaxi162Scf00191g01211' => 'pax', 'Peaxi162Scf00238g01110' => 'pax', 'Peaxi162Scf00330g00719' => 'pax', 'Peaxi162Scf00627g00018' => 'pax', 'PGR031G2686' => 'pgr', 'PGR042G0809' => 'pgr', 'PGR142G0193' => 'pgr', 'PGSC0003DMG400011066' => 'stu', 'PGSC0003DMG400012041' => 'stu', 'PGSC0003DMG400013678' => 'stu', 'PGSC0003DMG400023477' => 'stu', 'PGSC0003DMG400025956' => 'stu', 'PGSC0003DMG401019151' => 'stu', 'Phvul.006G116400' => 'pvu', 'Phvul.007G097300' => 'pvu', 'Phvul.010G015000' => 'pvu', 'Phvul.010G083900' => 'pvu', 'Potri.001G117100' => 'ptr', 'Potri.002G147300' => 'ptr', 'Potri.003G115600' => 'ptr', 'Potri.006G087400' => 'ptr', 'Potri.010G226100' => 'ptr', 'Potri.014G069200' => 'ptr', 'Potri.014G104000' => 'ptr', 'Potri.016G100200' => 'ptr', 'Pp3c10_20450' => 'ppa', 'Pp3c1_42400' => 'ppa', 'Pp3c3_24390' => 'ppa', 'Pp3c3_2860' => 'ppa', 'PRCOL_00003193' => 'pco', 'Prupe.2G144500' => 'ppe', 'Prupe.2G195700' => 'ppe', 'Prupe.2G209800' => 'ppe', 'Prupe.5G080000' => 'ppe', 'Prupe.6G257900' => 'ppe', 'Psat3g001160' => 'psa', 'Psat6g181880' => 'psa', 'Psat7g233720' => 'psa', 'PSO063G7587' => 'pso', 'PSO339G2145' => 'pso', 'PSO339G3369' => 'pso', 'PSO478G2747' => 'pso', 'PSO513G0140' => 'pso', 'PSO782G1614' => 'pso', 'PSO782G4889' => 'pso', 'PSO782G5485' => 'pso', 'PSO801G0241' => 'pso', 'QL07p048854' => 'qlo', 'QL08p046745' => 'qlo', 'QL08p052606' => 'qlo', 'QL08p053414' => 'qlo', 'QL08p054868' => 'qlo', 'RcHm_v2.0_Chr1g0350251' => 'rch', 'RcHm_v2.0_Chr1g0360851' => 'rch', 'RcHm_v2.0_Chr1g0362791' => 'rch', 'RcHm_v2.0_Chr3g0466281' => 'rch', 'RcHm_v2.0_Chr7g0201481' => 'rch', 'Rhsim01G0148600' => 'rsi', 'Rhsim05G0194400' => 'rsi', 'Rhsim07G0000700' => 'rsi', 'Rhsim07G0000800' => 'rsi', 'Rhsim07G0027900' => 'rsi', 'Rhsim09G0149500' => 'rsi', 'RhsimUnG0186900' => 'rsi', 'Sabra01G0089900' => 'sbr', 'Sabra02G0114700' => 'sbr', 'Sabra02G0116300' => 'sbr', 'Sabra03G0080100' => 'sbr', 'Sabra08G0024300' => 'sbr', 'Sabra10G0174300' => 'sbr', 'Sabra14G0048900' => 'sbr', 'Sabra14G0076500' => 'sbr', 'SalBow5G2513' => 'sbo', 'Sc01g0002300' => 'sci', 'Sc01g0004450' => 'sci', 'Sc06g0001680' => 'sci', 'Sc23g0003580' => 'sci', 'Sed0000913' => 'sed', 'Sed0001655' => 'sed', 'Sed0007745' => 'sed', 'Sed0010951' => 'sed', 'Sed0017599' => 'sed', 'Sed0021405' => 'sed', 'Sed0022810' => 'sed', 'SEGI_07099' => 'sgi', 'SEGI_11931' => 'sgi', 'SEGI_13187' => 'sgi', 'SEGI_29958' => 'sgi', 'SEGI_36351' => 'sgi', 'SGA_v2.0_scaffold126G33770' => 'sas', 'SGA_v2.0_scaffold153G37003' => 'sas', 'SGA_v2.0_scaffold2G01359' => 'sas', 'SGA_v2.0_scaffold5G03064' => 'sas', 'SGA_v2.0_scaffold95G28903' => 'sas', 'SHI12701' => 'shi', 'SHI26410' => 'shi', 'SHI38997' => 'shi', 'SHI53759' => 'shi', 'SHI53886' => 'shi', 'SHI54714' => 'shi', 'SMO011G0041' => 'smo', 'SMO146G0251' => 'smo', 'SMO160G0004' => 'smo', 'SMO174G0057' => 'smo', 'SMO244G0089' => 'smo', 'SMO296G0011' => 'smo', 'Solyc01g091280.3' => 'sly', 'Solyc05g047610.3' => 'sly', 'Solyc05g047640.3' => 'sly', 'Solyc05g055630.3' => 'sly', 'Solyc10g018160.2' => 'sly', 'Solyc10g084820.2' => 'sly', 'Solyc10g086565.2' => 'sly', 'Sopen01g037030' => 'spe', 'Sopen05g027920' => 'spe', 'Sopen05g034070' => 'spe', 'Sopen10g007260' => 'spe', 'Sopen10g034260' => 'spe', 'Sopen10g035950' => 'spe', 'Sp3g07710' => 'spa', 'Sp4g27420' => 'spa', 'Sp5g02450' => 'spa', 'Sp6g01280' => 'spa', 'Sp6g38480' => 'spa', 'Sp7g20780' => 'spa', 'TAR374G1413' => 'tar', 'TAR623G1777' => 'tar', 'TAR629G2370' => 'tar', 'TAR633G1759' => 'tar', 'TAR636G3387' => 'tar', 'THA.LOC104802447' => 'tha', 'THA.LOC104813916' => 'tha', 'THA.LOC104816423' => 'tha', 'THA.LOC104817246' => 'tha', 'THA.LOC104825895' => 'tha', 'Thecc.01G335200' => 'tca', 'Thecc.01G377400' => 'tca', 'Thecc.03G262200' => 'tca', 'Thecc.05G036800' => 'tca', 'Thecc.10G080500' => 'tca', 'Thecc.10G080800' => 'tca', 'Thhalv10001560m.g' => 'esa', 'Thhalv10006120m.g' => 'esa', 'Thhalv10014375m.g' => 'esa', 'Thhalv10021264m.g' => 'esa', 'Thhalv10028856m.g' => 'esa', 'TPR.G1914' => 'tpr', 'TPR.G4757' => 'tpr', 'TPR.G5595' => 'tpr', 'TWI14G0952' => 'twi', 'TWI14G1307' => 'twi', 'TWI38G2143' => 'twi', 'TWI59G0826' => 'twi', 'TWI77G0527' => 'twi', 'TWI81G0150' => 'twi', 'unitig_21.g21018' => 'ugi', 'unitig_26.g9725' => 'ugi', 'unitig_744.g24653' => 'ugi', 'unitig_749.g13778' => 'ugi', 'unitig_899.g15035' => 'ugi', 'vmacro04296' => 'vma', 'vmacro04852' => 'vma', 'vmacro13404' => 'vma', 'vmacro20169' => 'vma', 'vmacro21014' => 'vma', 'VMungo0331G0237' => 'vmu', 'VMungo0331G0706' => 'vmu', 'VMungo0331G1361' => 'vmu', 'VMungo0331G1489' => 'vmu', 'VMungo0540G1037' => 'vmu', 'VMungo0720G2487' => 'vmu', 'VMungo0720G2721' => 'vmu', 'Zm00001eb086860' => 'zma', 'Zm00001eb104760' => 'zma', 'Zm00001eb148220' => 'zma', 'Zm00001eb259030' => 'zma', 'Zm00001eb289590' => 'zma', 'Zm00001eb420150' => 'zma' ), 'gf_id' => 'HOM05D000968', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000968' ), 'data_identifier' => 'HOM05D000968', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000968', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p31690' => 'bna', 'A03p36040' => 'bna', 'A03p53730' => 'bna', 'A04p01410' => 'bna', 'A05p05420' => 'bna', 'A05p39630' => 'bna', 'A05p39640' => 'bna', 'A09p00970' => 'bna', 'A09p53060' => 'bna', 'A10p31890' => 'bna', 'Aa31LG10G15040' => 'aar', 'Aa31LG1G21090' => 'aar', 'Aa31LG1G26900' => 'aar', 'Aa31LG3G1820' => 'aar', 'Aa31LG5G1100' => 'aar', 'Aa31LG6G4740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2265' => 'aag', 'Actinidia07998' => 'ach', 'Actinidia11266' => 'ach', 'Actinidia12682' => 'ach', 'Actinidia26479' => 'ach', 'Actinidia31406' => 'ach', 'Actinidia32437' => 'ach', 'Actinidia38862' => 'ach', 'Ah.05g174230' => 'amhyb', 'Ah.05g179070' => 'amhyb', 'Ah.05g179090' => 'amhyb', 'Ah.12g059950' => 'amhyb', 'AL3G20480' => 'aly', 'AL4G44520' => 'aly', 'AL5G43110' => 'aly', 'AL6G13890' => 'aly', 'AL6G52620' => 'aly', 'AL7G30830' => 'aly', 'Aqoxy1G00899' => 'aox', 'Aqoxy5G04333' => 'aox', 'Aqoxy7G00641' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3IZ0NN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4EF6AW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W9P8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79GA3M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C43NQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFCU6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G95YVJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCHK29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LU1UG8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX91RN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGB4B1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8DA0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9H7JI' => 'arhy', 'AT3G09320' => 'ath', 'AT3G60800' => 'ath', 'AT4G00840' => 'ath', 'AT4G22750' => 'ath', 'AT5G04270' => 'ath', 'ATR0090G003' => 'atr', 'ATR0559G349' => 'atr', 'ATR0680G261' => 'atr', 'ATR0810G048' => 'atr', 'Atru.chr12.831' => 'acertr', 'Atru.chr5.303' => 'acertr', 'Atru.chr5.748' => 'acertr', 'Atru.chr8.1999' => 'acertr', 'Atru.chr9.1436' => 'acertr', 'AUR62004211' => 'cqu', 'AUR62004548' => 'cqu', 'AUR62013637' => 'cqu', 'AUR62022662' => 'cqu', 'AUR62025777' => 'cqu', 'AUR62042386' => 'cqu', 'BcaB01g02310' => 'bca', 'BcaB01g06062' => 'bca', 'BcaB02g08975' => 'bca', 'BcaB02g08980' => 'bca', 'BcaC01g04228' => 'bca', 'BcaC01g06830' => 'bca', 'BcaC02g10186' => 'bca', 'BcaC02g12214' => 'bca', 'BcaC04g24101' => 'bca', 'BcaC05g29520' => 'bca', 'BcaC05g29661' => 'bca', 'BcaC06g32130' => 'bca', 'BcaC06g32131' => 'bca', 'BcaC07g40601' => 'bca', 'BcaC07g42641' => 'bca', 'BcaNung01038' => 'bca', 'BcaNung01676' => 'bca', 'BcaNung02480' => 'bca', 'BcaNung07376' => 'bca', 'BolC3t16146H' => 'bol', 'BolC3t16637H' => 'bol', 'BolC4t22257H' => 'bol', 'BolC4t24728H' => 'bol', 'BolC5t34517H' => 'bol', 'BolC7t45703H' => 'bol', 'BolC8t51166H' => 'bol', 'BolC9t53038H' => 'bol', 'BolC9t60000H' => 'bol', 'BraA01t01345Z' => 'bra', 'BraA01t01346Z' => 'bra', 'BraA01t01348Z' => 'bra', 'BraA03t12347Z' => 'bra', 'BraA03t12775Z' => 'bra', 'BraA03t14439Z' => 'bra', 'BraA04t15860Z' => 'bra', 'BraA05t19511Z' => 'bra', 'BraA05t22746Z' => 'bra', 'BraA09t35767Z' => 'bra', 'BraA09t40732Z' => 'bra', 'BraA10t45233Z' => 'bra', 'C03p38720' => 'bna', 'C03p43680' => 'bna', 'C04p06350' => 'bna', 'C04p31800' => 'bna', 'C05p58680' => 'bna', 'C07p52110' => 'bna', 'C08p35760' => 'bna', 'C09p01050' => 'bna', 'C09p72600' => 'bna', 'CAN.G106.2' => 'can', 'CAN.G1482.1' => 'can', 'CAN.G324.12' => 'can', 'CAN.G388.20' => 'can', 'CAN.G412.7' => 'can', 'CAN.G694.32' => 'can', 'CAN.G92.12' => 'can', 'CANSAT11G2353' => 'cansat', 'CANSAT21G1398' => 'cansat', 'CANSAT56G2456' => 'cansat', 'CANSAT56G3031' => 'cansat', 'CANSAT56G4539' => 'cansat', 'CARHR083680' => 'chi', 'CARHR171190' => 'chi', 'CARHR209010' => 'chi', 'CARHR229680' => 'chi', 'CARHR249490' => 'chi', 'Carub.0003s0844' => 'cru', 'Carub.0005s2755' => 'cru', 'Carub.0006s0322' => 'cru', 'Carub.0006s3586' => 'cru', 'Carub.0007s1855' => 'cru', 'Ca_07808_v3' => 'car', 'Ca_09535_v3' => 'car', 'Ca_10548_v3' => 'car', 'Ca_19913_v3' => 'car', 'Ca_19916_v3' => 'car', 'Ca_19975_v3' => 'car', 'CBR_g22876' => 'cbr', 'CBR_g22879' => 'cbr', 'CBR_g38491' => 'cbr', 'CBR_g54185' => 'cbr', 'CBR_g54190' => 'cbr', 'Cc02_g11020' => 'ccan', 'Cc02_g23920' => 'ccan', 'Cc02_g39860' => 'ccan', 'Cc02_g39870' => 'ccan', 'Cc03_g06760' => 'ccan', 'Cc06_g02450' => 'ccan', 'Cc09_g09450' => 'ccan', 'CDE02G1959' => 'cde', 'CDE04G0600' => 'cde', 'CDE07G1996' => 'cde', 'CDE07G2078' => 'cde', 'CDE11G0611' => 'cde', 'Cfa001683' => 'cfa', 'Cfa001734' => 'cfa', 'Cfa001737' => 'cfa', 'Cfa003751' => 'cfa', 'Cfa012019' => 'cfa', 'Cfa017353' => 'cfa', 'Cfa017732' => 'cfa', 'Cfa022464' => 'cfa', 'Ciclev10012400m.g' => 'ccl', 'Ciclev10021242m.g' => 'ccl', 'Ciclev10021302m.g' => 'ccl', 'Ciclev10021463m.g' => 'ccl', 'Ciclev10032359m.g' => 'ccl', 'CiPaw.01G081000' => 'cil', 'CiPaw.01G262500' => 'cil', 'CiPaw.01G269800' => 'cil', 'CiPaw.02G168400' => 'cil', 'CiPaw.05G119500' => 'cil', 'CiPaw.11G147300' => 'cil', 'ClCG01G003630' => 'cla', 'ClCG05G000510' => 'cla', 'ClCG05G002300' => 'cla', 'ClCG08G007650' => 'cla', 'ClCG10G021250' => 'cla', 'COL.COLO4_06218' => 'col', 'COL.COLO4_12538' => 'col', 'COL.COLO4_14775' => 'col', 'COL.COLO4_23875' => 'col', 'Cpa.g.sc141.16' => 'cpa', 'Cpa.g.sc169.16' => 'cpa', 'Cpa.g.sc244.4' => 'cpa', 'Cpa.g.sc244.5' => 'cpa', 'Cpa.g.sc29.87' => 'cpa', 'Cpa.g.sc53.115' => 'cpa', 'Cre03.g207502' => 'cre', 'Cre06.g277000' => 'cre', 'Cre09.g394050' => 'cre', 'CsaV3_3G007680' => 'csa', 'CsaV3_3G009710' => 'csa', 'CsaV3_3G034790' => 'csa', 'CsaV3_5G003750' => 'csa', 'CsaV3_6G036620' => 'csa', 'CSS0002288' => 'camsi', 'CSS0011250' => 'camsi', 'CSS0021619' => 'camsi', 'CSS0046701' => 'camsi', 'DCAR_006420' => 'dca', 'DCAR_006865' => 'dca', 'DCAR_008558' => 'dca', 'DCAR_028754' => 'dca', 'DCAR_028755' => 'dca', 'Dinv31218' => 'din', 'Dinv32371' => 'din', 'Dinv34250' => 'din', 'Dinv37156' => 'din', 'Dinv43704' => 'din', 'Duzib093G1811' => 'dzi', 'Duzib106G1622' => 'dzi', 'Duzib114G0504' => 'dzi', 'Duzib128G0338' => 'dzi', 'Duzib128G1577' => 'dzi', 'Duzib133G0104' => 'dzi', 'Duzib133G1080' => 'dzi', 'Duzib138G0324' => 'dzi', 'Duzib138G0394' => 'dzi', 'Duzib205G0122' => 'dzi', 'Duzib268G1020' => 'dzi', 'Duzib268G1359' => 'dzi', 'ECA232G3929' => 'eca', 'ECA236G2210' => 'eca', 'ECA236G2287' => 'eca', 'ECA240G4568' => 'eca', 'ECA247G0894' => 'eca', 'EL10Ac1g00200' => 'bvu', 'EL10Ac1g00886' => 'bvu', 'EL10As1g23091' => 'bvu', 'EL10As1g23092' => 'bvu', 'Eucgr.A01284' => 'egr', 'Eucgr.A01285' => 'egr', 'Eucgr.D02456' => 'egr', 'Eucgr.E00018' => 'egr', 'Eucgr.E01439' => 'egr', 'Eucgr.G02859' => 'egr', 'FAN01G0168' => 'fan', 'FAN01G0453' => 'fan', 'FAN01G2761' => 'fan', 'FAN02G1239' => 'fan', 'FAN03G0645' => 'fan', 'FAN03G2707' => 'fan', 'FAN03G2978' => 'fan', 'FAN04G0227' => 'fan', 'FAN06G0091' => 'fan', 'FAN06G1418' => 'fan', 'FAN06G1512' => 'fan', 'FAN06G1986' => 'fan', 'FAN06G2905' => 'fan', 'FAN06G4325' => 'fan', 'FAN08G0033' => 'fan', 'FAN09G0642' => 'fan', 'FAN10G1763' => 'fan', 'FAN10G2026' => 'fan', 'FAN10G2513' => 'fan', 'FAN10G3402' => 'fan', 'FAN10G3564' => 'fan', 'FAN10G3987' => 'fan', 'FAN13G1490' => 'fan', 'FAN14G5857' => 'fan', 'FAN18G1188' => 'fan', 'FvH4_5g00750' => 'fve', 'FvH4_6g13410' => 'fve', 'FvH4_7g11740' => 'fve', 'FvH4_7g17410' => 'fve', 'FvH4_7g18860' => 'fve', 'Glyma.01G099100' => 'gma', 'Glyma.01G142300' => 'gma', 'Glyma.03G025500' => 'gma', 'Glyma.03G069700' => 'gma', 'Glyma.03G260000' => 'gma', 'Glyma.09G269800' => 'gma', 'Glyma.10G208700' => 'gma', 'Glyma.18G220400' => 'gma', 'Glyma.20G182000' => 'gma', 'Gohir.A01G221726' => 'ghi', 'Gohir.A07G134600' => 'ghi', 'Gohir.A07G146000' => 'ghi', 'Gohir.A08G173900' => 'ghi', 'Gohir.A09G194900' => 'ghi', 'Gohir.A10G204100' => 'ghi', 'Gohir.A11G080600' => 'ghi', 'Gohir.A11G327500' => 'ghi', 'Gohir.A12G101800' => 'ghi', 'Gohir.D01G211200' => 'ghi', 'Gohir.D07G139200' => 'ghi', 'Gohir.D07G152100' => 'ghi', 'Gohir.D08G192600' => 'ghi', 'Gohir.D09G189200' => 'ghi', 'Gohir.D10G212000' => 'ghi', 'Gohir.D11G085200' => 'ghi', 'Gohir.D11G346400' => 'ghi', 'Gohir.D12G104800' => 'ghi', 'Gorai.001G151300' => 'gra', 'Gorai.001G174100' => 'gra', 'Gorai.002G257000' => 'gra', 'Gorai.004G202600' => 'gra', 'Gorai.007G090900' => 'gra', 'Gorai.007G376700' => 'gra', 'Gorai.008G114100' => 'gra', 'Gorai.011G237900' => 'gra', 'GSVIVG01005450001' => 'vvi', 'GSVIVG01016232001' => 'vvi', 'GSVIVG01026157001' => 'vvi', 'GSVIVG01027419001' => 'vvi', 'GSVIVG01027631001' => 'vvi', 'GSVIVG01034143001' => 'vvi', 'HanXRQChr03g0093921' => 'han', 'HanXRQChr04g0120001' => 'han', 'HanXRQChr04g0122561' => 'han', 'HanXRQChr09g0246851' => 'han', 'HanXRQChr10g0293311' => 'han', 'HanXRQChr13g0425231' => 'han', 'HanXRQChr16g0532571' => 'han', 'Haze_09050' => 'cav', 'Haze_15715' => 'cav', 'Haze_15716' => 'cav', 'Haze_16803' => 'cav', 'Haze_16850' => 'cav', 'Hma1.2p1_0301F.1_g118655' => 'hma', 'Hma1.2p1_0309F.1_g120590' => 'hma', 'Hma1.2p1_0936F.1_g238900' => 'hma', 'Hma1.2p1_3552F.1_g336740' => 'hma', 'HPP92_003520' => 'vpl', 'HPP92_006628' => 'vpl', 'HPP92_006645' => 'vpl', 'HPP92_014669' => 'vpl', 'HPP92_015077' => 'vpl', 'Hund16742' => 'sun', 'Hund17022' => 'sun', 'Lalb_Chr02g0152131' => 'lal', 'Lalb_Chr05g0225371' => 'lal', 'Lalb_Chr07g0189841' => 'lal', 'Lalb_Chr07g0192961' => 'lal', 'Lalb_Chr12g0208221' => 'lal', 'Lalb_Chr13g0291211' => 'lal', 'Lalb_Chr13g0291781' => 'lal', 'Lalb_Chr18g0044651' => 'lal', 'Lalb_Chr21g0313731' => 'lal', 'Lj1g0022533' => 'lja', 'Lj2A18T50' => 'lonja', 'Lj2A92G93' => 'lonja', 'Lj3A965T73' => 'lonja', 'Lj3g0000673' => 'lja', 'Lj3g0002666' => 'lja', 'Lj4g0016985' => 'lja', 'Lj5g0003625' => 'lja', 'Lj7A529G36' => 'lonja', 'Lj9A569T49' => 'lonja', 'Lj9A604T63' => 'lonja', 'Lsat_1_v5_gn_3_132060' => 'lsa', 'Lsat_1_v5_gn_4_68941' => 'lsa', 'Lsat_1_v5_gn_5_95580' => 'lsa', 'Lsat_1_v5_gn_7_161' => 'lsa', 'Lsat_1_v5_gn_7_7041' => 'lsa', 'Lsat_1_v5_gn_9_33481' => 'lsa', 'Lsat_1_v5_gn_9_68260' => 'lsa', 'Manes.01G073100' => 'mes', 'Manes.01G266300' => 'mes', 'Manes.02G033300' => 'mes', 'Manes.05G017900' => 'mes', 'Manes.05G046100' => 'mes', 'Manes.08G080900' => 'mes', 'Manes.10G049400' => 'mes', 'Mapoly0009s0186' => 'mpo', 'Mapoly0036s0118' => 'mpo', 'Mapoly0101s0046' => 'mpo', 'MBI04_g30218_MAGBIO' => 'mbi', 'MBI04_g35564_MAGBIO' => 'mbi', 'MBI12_g34011_MAGBIO' => 'mbi', 'MBI14_g04655_MAGBIO' => 'mbi', 'MCO07G653' => 'mco', 'MCO10G173' => 'mco', 'MD01G1087100' => 'mdo', 'MD01G1104200' => 'mdo', 'MD02G1205100' => 'mdo', 'MD04G1079200' => 'mdo', 'MD04G1131400' => 'mdo', 'MD07G1121600' => 'mdo', 'MD07G1157300' => 'mdo', 'MD07G1171000' => 'mdo', 'MD12G1144500' => 'mdo', 'Medtr1g094610' => 'mtr', 'Medtr4g021795' => 'mtr', 'Medtr4g023760' => 'mtr', 'Medtr7g118050' => 'mtr', 'MELO3C005582.2' => 'cme', 'MELO3C005989.2' => 'cme', 'MELO3C006192.2' => 'cme', 'MELO3C009248.2' => 'cme', 'MELO3C019817.2' => 'cme', 'Migut.B01625' => 'egut', 'Migut.B01915' => 'egut', 'Migut.F01721' => 'egut', 'Migut.J00314' => 'egut', 'MSTRG.20742' => 'ama', 'MSTRG.8134' => 'ama', 'Nitab4.5_0000096g0010' => 'nta', 'Nitab4.5_0000202g0030' => 'nta', 'Nitab4.5_0000216g0370' => 'nta', 'Nitab4.5_0000457g0230' => 'nta', 'Nitab4.5_0001702g0170' => 'nta', 'Nitab4.5_0003607g0010' => 'nta', 'Nitab4.5_0004917g0020' => 'nta', 'Nitab4.5_0007059g0010' => 'nta', 'Nitab4.5_0007184g0010' => 'nta', 'Nitab4.5_0007346g0020' => 'nta', 'Nn1g00410' => 'nnu', 'Nn1g01252' => 'nnu', 'Nn2g11168' => 'nnu', 'Nn2g13403' => 'nnu', 'Nn2g13760' => 'nnu', 'Nn4g26380' => 'nnu', 'Oeu000806.2' => 'oeu', 'Oeu005788.1' => 'oeu', 'Oeu006900.3' => 'oeu', 'Oeu007797.1' => 'oeu', 'Oeu011932.1' => 'oeu', 'Oeu022739.1' => 'oeu', 'Oeu037918.1' => 'oeu', 'Oeu055490.2' => 'oeu', 'Os01g0844400' => 'osa', 'Os02g0819100' => 'osa', 'Os03g0804300' => 'osa', 'Os05g0458000' => 'osa', 'Os07g0467800' => 'osa', 'Os12g0602200' => 'osa', 'Peaxi162Scf00013g03444' => 'pax', 'Peaxi162Scf00094g01120' => 'pax', 'Peaxi162Scf00191g01211' => 'pax', 'Peaxi162Scf00238g01110' => 'pax', 'Peaxi162Scf00330g00719' => 'pax', 'Peaxi162Scf00627g00018' => 'pax', 'PGR031G2686' => 'pgr', 'PGR042G0809' => 'pgr', 'PGR142G0193' => 'pgr', 'PGSC0003DMG400011066' => 'stu', 'PGSC0003DMG400012041' => 'stu', 'PGSC0003DMG400013678' => 'stu', 'PGSC0003DMG400023477' => 'stu', 'PGSC0003DMG400025956' => 'stu', 'PGSC0003DMG401019151' => 'stu', 'Phvul.006G116400' => 'pvu', 'Phvul.007G097300' => 'pvu', 'Phvul.010G015000' => 'pvu', 'Phvul.010G083900' => 'pvu', 'Potri.001G117100' => 'ptr', 'Potri.002G147300' => 'ptr', 'Potri.003G115600' => 'ptr', 'Potri.006G087400' => 'ptr', 'Potri.010G226100' => 'ptr', 'Potri.014G069200' => 'ptr', 'Potri.014G104000' => 'ptr', 'Potri.016G100200' => 'ptr', 'Pp3c10_20450' => 'ppa', 'Pp3c1_42400' => 'ppa', 'Pp3c3_24390' => 'ppa', 'Pp3c3_2860' => 'ppa', 'PRCOL_00003193' => 'pco', 'Prupe.2G144500' => 'ppe', 'Prupe.2G195700' => 'ppe', 'Prupe.2G209800' => 'ppe', 'Prupe.5G080000' => 'ppe', 'Prupe.6G257900' => 'ppe', 'Psat3g001160' => 'psa', 'Psat6g181880' => 'psa', 'Psat7g233720' => 'psa', 'PSO063G7587' => 'pso', 'PSO339G2145' => 'pso', 'PSO339G3369' => 'pso', 'PSO478G2747' => 'pso', 'PSO513G0140' => 'pso', 'PSO782G1614' => 'pso', 'PSO782G4889' => 'pso', 'PSO782G5485' => 'pso', 'PSO801G0241' => 'pso', 'QL07p048854' => 'qlo', 'QL08p046745' => 'qlo', 'QL08p052606' => 'qlo', 'QL08p053414' => 'qlo', 'QL08p054868' => 'qlo', 'RcHm_v2.0_Chr1g0350251' => 'rch', 'RcHm_v2.0_Chr1g0360851' => 'rch', 'RcHm_v2.0_Chr1g0362791' => 'rch', 'RcHm_v2.0_Chr3g0466281' => 'rch', 'RcHm_v2.0_Chr7g0201481' => 'rch', 'Rhsim01G0148600' => 'rsi', 'Rhsim05G0194400' => 'rsi', 'Rhsim07G0000700' => 'rsi', 'Rhsim07G0000800' => 'rsi', 'Rhsim07G0027900' => 'rsi', 'Rhsim09G0149500' => 'rsi', 'RhsimUnG0186900' => 'rsi', 'Sabra01G0089900' => 'sbr', 'Sabra02G0114700' => 'sbr', 'Sabra02G0116300' => 'sbr', 'Sabra03G0080100' => 'sbr', 'Sabra08G0024300' => 'sbr', 'Sabra10G0174300' => 'sbr', 'Sabra14G0048900' => 'sbr', 'Sabra14G0076500' => 'sbr', 'SalBow5G2513' => 'sbo', 'Sc01g0002300' => 'sci', 'Sc01g0004450' => 'sci', 'Sc06g0001680' => 'sci', 'Sc23g0003580' => 'sci', 'Sed0000913' => 'sed', 'Sed0001655' => 'sed', 'Sed0007745' => 'sed', 'Sed0010951' => 'sed', 'Sed0017599' => 'sed', 'Sed0021405' => 'sed', 'Sed0022810' => 'sed', 'SEGI_07099' => 'sgi', 'SEGI_11931' => 'sgi', 'SEGI_13187' => 'sgi', 'SEGI_29958' => 'sgi', 'SEGI_36351' => 'sgi', 'SGA_v2.0_scaffold126G33770' => 'sas', 'SGA_v2.0_scaffold153G37003' => 'sas', 'SGA_v2.0_scaffold2G01359' => 'sas', 'SGA_v2.0_scaffold5G03064' => 'sas', 'SGA_v2.0_scaffold95G28903' => 'sas', 'SHI12701' => 'shi', 'SHI26410' => 'shi', 'SHI38997' => 'shi', 'SHI53759' => 'shi', 'SHI53886' => 'shi', 'SHI54714' => 'shi', 'SMO011G0041' => 'smo', 'SMO146G0251' => 'smo', 'SMO160G0004' => 'smo', 'SMO174G0057' => 'smo', 'SMO244G0089' => 'smo', 'SMO296G0011' => 'smo', 'Solyc01g091280.3' => 'sly', 'Solyc05g047610.3' => 'sly', 'Solyc05g047640.3' => 'sly', 'Solyc05g055630.3' => 'sly', 'Solyc10g018160.2' => 'sly', 'Solyc10g084820.2' => 'sly', 'Solyc10g086565.2' => 'sly', 'Sopen01g037030' => 'spe', 'Sopen05g027920' => 'spe', 'Sopen05g034070' => 'spe', 'Sopen10g007260' => 'spe', 'Sopen10g034260' => 'spe', 'Sopen10g035950' => 'spe', 'Sp3g07710' => 'spa', 'Sp4g27420' => 'spa', 'Sp5g02450' => 'spa', 'Sp6g01280' => 'spa', 'Sp6g38480' => 'spa', 'Sp7g20780' => 'spa', 'TAR374G1413' => 'tar', 'TAR623G1777' => 'tar', 'TAR629G2370' => 'tar', 'TAR633G1759' => 'tar', 'TAR636G3387' => 'tar', 'THA.LOC104802447' => 'tha', 'THA.LOC104813916' => 'tha', 'THA.LOC104816423' => 'tha', 'THA.LOC104817246' => 'tha', 'THA.LOC104825895' => 'tha', 'Thecc.01G335200' => 'tca', 'Thecc.01G377400' => 'tca', 'Thecc.03G262200' => 'tca', 'Thecc.05G036800' => 'tca', 'Thecc.10G080500' => 'tca', 'Thecc.10G080800' => 'tca', 'Thhalv10001560m.g' => 'esa', 'Thhalv10006120m.g' => 'esa', 'Thhalv10014375m.g' => 'esa', 'Thhalv10021264m.g' => 'esa', 'Thhalv10028856m.g' => 'esa', 'TPR.G1914' => 'tpr', 'TPR.G4757' => 'tpr', 'TPR.G5595' => 'tpr', 'TWI14G0952' => 'twi', 'TWI14G1307' => 'twi', 'TWI38G2143' => 'twi', 'TWI59G0826' => 'twi', 'TWI77G0527' => 'twi', 'TWI81G0150' => 'twi', 'unitig_21.g21018' => 'ugi', 'unitig_26.g9725' => 'ugi', 'unitig_744.g24653' => 'ugi', 'unitig_749.g13778' => 'ugi', 'unitig_899.g15035' => 'ugi', 'vmacro04296' => 'vma', 'vmacro04852' => 'vma', 'vmacro13404' => 'vma', 'vmacro20169' => 'vma', 'vmacro21014' => 'vma', 'VMungo0331G0237' => 'vmu', 'VMungo0331G0706' => 'vmu', 'VMungo0331G1361' => 'vmu', 'VMungo0331G1489' => 'vmu', 'VMungo0540G1037' => 'vmu', 'VMungo0720G2487' => 'vmu', 'VMungo0720G2721' => 'vmu', 'Zm00001eb086860' => 'zma', 'Zm00001eb104760' => 'zma', 'Zm00001eb148220' => 'zma', 'Zm00001eb259030' => 'zma', 'Zm00001eb289590' => 'zma', 'Zm00001eb420150' => 'zma' ) $gf_id = 'HOM05D000968' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000968' ) $data_identifier = 'HOM05D000968' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 19, 'bol' => (int) 9, 'bra' => (int) 12, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 5, 'ccan' => (int) 7, 'cde' => (int) 5, 'cfa' => (int) 8, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 4, 'dca' => (int) 5, 'din' => (int) 5, 'dzi' => (int) 12, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 25, 'fve' => (int) 5, 'gma' => (int) 9, 'ghi' => (int) 18, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 7, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 5, 'sun' => (int) 2, 'lal' => (int) 9, 'lja' => (int) 5, 'lonja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 9, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 2, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 3, 'stu' => (int) 6, 'pvu' => (int) 4, 'ptr' => (int) 8, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 3, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 1, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 5, 'sas' => (int) 5, 'shi' => (int) 6, 'smo' => (int) 6, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 3, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420150' $species_info = array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ) $local_species = 'aox' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000968', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p31690' => 'bna', 'A03p36040' => 'bna', 'A03p53730' => 'bna', 'A04p01410' => 'bna', 'A05p05420' => 'bna', 'A05p39630' => 'bna', 'A05p39640' => 'bna', 'A09p00970' => 'bna', 'A09p53060' => 'bna', 'A10p31890' => 'bna', 'Aa31LG10G15040' => 'aar', 'Aa31LG1G21090' => 'aar', 'Aa31LG1G26900' => 'aar', 'Aa31LG3G1820' => 'aar', 'Aa31LG5G1100' => 'aar', 'Aa31LG6G4740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2265' => 'aag', 'Actinidia07998' => 'ach', 'Actinidia11266' => 'ach', 'Actinidia12682' => 'ach', 'Actinidia26479' => 'ach', 'Actinidia31406' => 'ach', 'Actinidia32437' => 'ach', 'Actinidia38862' => 'ach', 'Ah.05g174230' => 'amhyb', 'Ah.05g179070' => 'amhyb', 'Ah.05g179090' => 'amhyb', 'Ah.12g059950' => 'amhyb', 'AL3G20480' => 'aly', 'AL4G44520' => 'aly', 'AL5G43110' => 'aly', 'AL6G13890' => 'aly', 'AL6G52620' => 'aly', 'AL7G30830' => 'aly', 'Aqoxy1G00899' => 'aox', 'Aqoxy5G04333' => 'aox', 'Aqoxy7G00641' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3IZ0NN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4EF6AW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W9P8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79GA3M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C43NQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFCU6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G95YVJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCHK29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LU1UG8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX91RN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGB4B1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8DA0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9H7JI' => 'arhy', 'AT3G09320' => 'ath', 'AT3G60800' => 'ath', 'AT4G00840' => 'ath', 'AT4G22750' => 'ath', 'AT5G04270' => 'ath', 'ATR0090G003' => 'atr', 'ATR0559G349' => 'atr', 'ATR0680G261' => 'atr', 'ATR0810G048' => 'atr', 'Atru.chr12.831' => 'acertr', 'Atru.chr5.303' => 'acertr', 'Atru.chr5.748' => 'acertr', 'Atru.chr8.1999' => 'acertr', 'Atru.chr9.1436' => 'acertr', 'AUR62004211' => 'cqu', 'AUR62004548' => 'cqu', 'AUR62013637' => 'cqu', 'AUR62022662' => 'cqu', 'AUR62025777' => 'cqu', 'AUR62042386' => 'cqu', 'BcaB01g02310' => 'bca', 'BcaB01g06062' => 'bca', 'BcaB02g08975' => 'bca', 'BcaB02g08980' => 'bca', 'BcaC01g04228' => 'bca', 'BcaC01g06830' => 'bca', 'BcaC02g10186' => 'bca', 'BcaC02g12214' => 'bca', 'BcaC04g24101' => 'bca', 'BcaC05g29520' => 'bca', 'BcaC05g29661' => 'bca', 'BcaC06g32130' => 'bca', 'BcaC06g32131' => 'bca', 'BcaC07g40601' => 'bca', 'BcaC07g42641' => 'bca', 'BcaNung01038' => 'bca', 'BcaNung01676' => 'bca', 'BcaNung02480' => 'bca', 'BcaNung07376' => 'bca', 'BolC3t16146H' => 'bol', 'BolC3t16637H' => 'bol', 'BolC4t22257H' => 'bol', 'BolC4t24728H' => 'bol', 'BolC5t34517H' => 'bol', 'BolC7t45703H' => 'bol', 'BolC8t51166H' => 'bol', 'BolC9t53038H' => 'bol', 'BolC9t60000H' => 'bol', 'BraA01t01345Z' => 'bra', 'BraA01t01346Z' => 'bra', 'BraA01t01348Z' => 'bra', 'BraA03t12347Z' => 'bra', 'BraA03t12775Z' => 'bra', 'BraA03t14439Z' => 'bra', 'BraA04t15860Z' => 'bra', 'BraA05t19511Z' => 'bra', 'BraA05t22746Z' => 'bra', 'BraA09t35767Z' => 'bra', 'BraA09t40732Z' => 'bra', 'BraA10t45233Z' => 'bra', 'C03p38720' => 'bna', 'C03p43680' => 'bna', 'C04p06350' => 'bna', 'C04p31800' => 'bna', 'C05p58680' => 'bna', 'C07p52110' => 'bna', 'C08p35760' => 'bna', 'C09p01050' => 'bna', 'C09p72600' => 'bna', 'CAN.G106.2' => 'can', 'CAN.G1482.1' => 'can', 'CAN.G324.12' => 'can', 'CAN.G388.20' => 'can', 'CAN.G412.7' => 'can', 'CAN.G694.32' => 'can', 'CAN.G92.12' => 'can', 'CANSAT11G2353' => 'cansat', 'CANSAT21G1398' => 'cansat', 'CANSAT56G2456' => 'cansat', 'CANSAT56G3031' => 'cansat', 'CANSAT56G4539' => 'cansat', 'CARHR083680' => 'chi', 'CARHR171190' => 'chi', 'CARHR209010' => 'chi', 'CARHR229680' => 'chi', 'CARHR249490' => 'chi', 'Carub.0003s0844' => 'cru', 'Carub.0005s2755' => 'cru', 'Carub.0006s0322' => 'cru', 'Carub.0006s3586' => 'cru', 'Carub.0007s1855' => 'cru', 'Ca_07808_v3' => 'car', 'Ca_09535_v3' => 'car', 'Ca_10548_v3' => 'car', 'Ca_19913_v3' => 'car', 'Ca_19916_v3' => 'car', 'Ca_19975_v3' => 'car', 'CBR_g22876' => 'cbr', 'CBR_g22879' => 'cbr', 'CBR_g38491' => 'cbr', 'CBR_g54185' => 'cbr', 'CBR_g54190' => 'cbr', 'Cc02_g11020' => 'ccan', 'Cc02_g23920' => 'ccan', 'Cc02_g39860' => 'ccan', 'Cc02_g39870' => 'ccan', 'Cc03_g06760' => 'ccan', 'Cc06_g02450' => 'ccan', 'Cc09_g09450' => 'ccan', 'CDE02G1959' => 'cde', 'CDE04G0600' => 'cde', 'CDE07G1996' => 'cde', 'CDE07G2078' => 'cde', 'CDE11G0611' => 'cde', 'Cfa001683' => 'cfa', 'Cfa001734' => 'cfa', 'Cfa001737' => 'cfa', 'Cfa003751' => 'cfa', 'Cfa012019' => 'cfa', 'Cfa017353' => 'cfa', 'Cfa017732' => 'cfa', 'Cfa022464' => 'cfa', 'Ciclev10012400m.g' => 'ccl', 'Ciclev10021242m.g' => 'ccl', 'Ciclev10021302m.g' => 'ccl', 'Ciclev10021463m.g' => 'ccl', 'Ciclev10032359m.g' => 'ccl', 'CiPaw.01G081000' => 'cil', 'CiPaw.01G262500' => 'cil', 'CiPaw.01G269800' => 'cil', 'CiPaw.02G168400' => 'cil', 'CiPaw.05G119500' => 'cil', 'CiPaw.11G147300' => 'cil', 'ClCG01G003630' => 'cla', 'ClCG05G000510' => 'cla', 'ClCG05G002300' => 'cla', 'ClCG08G007650' => 'cla', 'ClCG10G021250' => 'cla', 'COL.COLO4_06218' => 'col', 'COL.COLO4_12538' => 'col', 'COL.COLO4_14775' => 'col', 'COL.COLO4_23875' => 'col', 'Cpa.g.sc141.16' => 'cpa', 'Cpa.g.sc169.16' => 'cpa', 'Cpa.g.sc244.4' => 'cpa', 'Cpa.g.sc244.5' => 'cpa', 'Cpa.g.sc29.87' => 'cpa', 'Cpa.g.sc53.115' => 'cpa', 'Cre03.g207502' => 'cre', 'Cre06.g277000' => 'cre', 'Cre09.g394050' => 'cre', 'CsaV3_3G007680' => 'csa', 'CsaV3_3G009710' => 'csa', 'CsaV3_3G034790' => 'csa', 'CsaV3_5G003750' => 'csa', 'CsaV3_6G036620' => 'csa', 'CSS0002288' => 'camsi', 'CSS0011250' => 'camsi', 'CSS0021619' => 'camsi', 'CSS0046701' => 'camsi', 'DCAR_006420' => 'dca', 'DCAR_006865' => 'dca', 'DCAR_008558' => 'dca', 'DCAR_028754' => 'dca', 'DCAR_028755' => 'dca', 'Dinv31218' => 'din', 'Dinv32371' => 'din', 'Dinv34250' => 'din', 'Dinv37156' => 'din', 'Dinv43704' => 'din', 'Duzib093G1811' => 'dzi', 'Duzib106G1622' => 'dzi', 'Duzib114G0504' => 'dzi', 'Duzib128G0338' => 'dzi', 'Duzib128G1577' => 'dzi', 'Duzib133G0104' => 'dzi', 'Duzib133G1080' => 'dzi', 'Duzib138G0324' => 'dzi', 'Duzib138G0394' => 'dzi', 'Duzib205G0122' => 'dzi', 'Duzib268G1020' => 'dzi', 'Duzib268G1359' => 'dzi', 'ECA232G3929' => 'eca', 'ECA236G2210' => 'eca', 'ECA236G2287' => 'eca', 'ECA240G4568' => 'eca', 'ECA247G0894' => 'eca', 'EL10Ac1g00200' => 'bvu', 'EL10Ac1g00886' => 'bvu', 'EL10As1g23091' => 'bvu', 'EL10As1g23092' => 'bvu', 'Eucgr.A01284' => 'egr', 'Eucgr.A01285' => 'egr', 'Eucgr.D02456' => 'egr', 'Eucgr.E00018' => 'egr', 'Eucgr.E01439' => 'egr', 'Eucgr.G02859' => 'egr', 'FAN01G0168' => 'fan', 'FAN01G0453' => 'fan', 'FAN01G2761' => 'fan', 'FAN02G1239' => 'fan', 'FAN03G0645' => 'fan', 'FAN03G2707' => 'fan', 'FAN03G2978' => 'fan', 'FAN04G0227' => 'fan', 'FAN06G0091' => 'fan', 'FAN06G1418' => 'fan', 'FAN06G1512' => 'fan', 'FAN06G1986' => 'fan', 'FAN06G2905' => 'fan', 'FAN06G4325' => 'fan', 'FAN08G0033' => 'fan', 'FAN09G0642' => 'fan', 'FAN10G1763' => 'fan', 'FAN10G2026' => 'fan', 'FAN10G2513' => 'fan', 'FAN10G3402' => 'fan', 'FAN10G3564' => 'fan', 'FAN10G3987' => 'fan', 'FAN13G1490' => 'fan', 'FAN14G5857' => 'fan', 'FAN18G1188' => 'fan', 'FvH4_5g00750' => 'fve', 'FvH4_6g13410' => 'fve', 'FvH4_7g11740' => 'fve', 'FvH4_7g17410' => 'fve', 'FvH4_7g18860' => 'fve', 'Glyma.01G099100' => 'gma', 'Glyma.01G142300' => 'gma', 'Glyma.03G025500' => 'gma', 'Glyma.03G069700' => 'gma', 'Glyma.03G260000' => 'gma', 'Glyma.09G269800' => 'gma', 'Glyma.10G208700' => 'gma', 'Glyma.18G220400' => 'gma', 'Glyma.20G182000' => 'gma', 'Gohir.A01G221726' => 'ghi', 'Gohir.A07G134600' => 'ghi', 'Gohir.A07G146000' => 'ghi', 'Gohir.A08G173900' => 'ghi', 'Gohir.A09G194900' => 'ghi', 'Gohir.A10G204100' => 'ghi', 'Gohir.A11G080600' => 'ghi', 'Gohir.A11G327500' => 'ghi', 'Gohir.A12G101800' => 'ghi', 'Gohir.D01G211200' => 'ghi', 'Gohir.D07G139200' => 'ghi', 'Gohir.D07G152100' => 'ghi', 'Gohir.D08G192600' => 'ghi', 'Gohir.D09G189200' => 'ghi', 'Gohir.D10G212000' => 'ghi', 'Gohir.D11G085200' => 'ghi', 'Gohir.D11G346400' => 'ghi', 'Gohir.D12G104800' => 'ghi', 'Gorai.001G151300' => 'gra', 'Gorai.001G174100' => 'gra', 'Gorai.002G257000' => 'gra', 'Gorai.004G202600' => 'gra', 'Gorai.007G090900' => 'gra', 'Gorai.007G376700' => 'gra', 'Gorai.008G114100' => 'gra', 'Gorai.011G237900' => 'gra', 'GSVIVG01005450001' => 'vvi', 'GSVIVG01016232001' => 'vvi', 'GSVIVG01026157001' => 'vvi', 'GSVIVG01027419001' => 'vvi', 'GSVIVG01027631001' => 'vvi', 'GSVIVG01034143001' => 'vvi', 'HanXRQChr03g0093921' => 'han', 'HanXRQChr04g0120001' => 'han', 'HanXRQChr04g0122561' => 'han', 'HanXRQChr09g0246851' => 'han', 'HanXRQChr10g0293311' => 'han', 'HanXRQChr13g0425231' => 'han', 'HanXRQChr16g0532571' => 'han', 'Haze_09050' => 'cav', 'Haze_15715' => 'cav', 'Haze_15716' => 'cav', 'Haze_16803' => 'cav', 'Haze_16850' => 'cav', 'Hma1.2p1_0301F.1_g118655' => 'hma', 'Hma1.2p1_0309F.1_g120590' => 'hma', 'Hma1.2p1_0936F.1_g238900' => 'hma', 'Hma1.2p1_3552F.1_g336740' => 'hma', 'HPP92_003520' => 'vpl', 'HPP92_006628' => 'vpl', 'HPP92_006645' => 'vpl', 'HPP92_014669' => 'vpl', 'HPP92_015077' => 'vpl', 'Hund16742' => 'sun', 'Hund17022' => 'sun', 'Lalb_Chr02g0152131' => 'lal', 'Lalb_Chr05g0225371' => 'lal', 'Lalb_Chr07g0189841' => 'lal', 'Lalb_Chr07g0192961' => 'lal', 'Lalb_Chr12g0208221' => 'lal', 'Lalb_Chr13g0291211' => 'lal', 'Lalb_Chr13g0291781' => 'lal', 'Lalb_Chr18g0044651' => 'lal', 'Lalb_Chr21g0313731' => 'lal', 'Lj1g0022533' => 'lja', 'Lj2A18T50' => 'lonja', 'Lj2A92G93' => 'lonja', 'Lj3A965T73' => 'lonja', 'Lj3g0000673' => 'lja', 'Lj3g0002666' => 'lja', 'Lj4g0016985' => 'lja', 'Lj5g0003625' => 'lja', 'Lj7A529G36' => 'lonja', 'Lj9A569T49' => 'lonja', 'Lj9A604T63' => 'lonja', 'Lsat_1_v5_gn_3_132060' => 'lsa', 'Lsat_1_v5_gn_4_68941' => 'lsa', 'Lsat_1_v5_gn_5_95580' => 'lsa', 'Lsat_1_v5_gn_7_161' => 'lsa', 'Lsat_1_v5_gn_7_7041' => 'lsa', 'Lsat_1_v5_gn_9_33481' => 'lsa', 'Lsat_1_v5_gn_9_68260' => 'lsa', 'Manes.01G073100' => 'mes', 'Manes.01G266300' => 'mes', 'Manes.02G033300' => 'mes', 'Manes.05G017900' => 'mes', 'Manes.05G046100' => 'mes', 'Manes.08G080900' => 'mes', 'Manes.10G049400' => 'mes', 'Mapoly0009s0186' => 'mpo', 'Mapoly0036s0118' => 'mpo', 'Mapoly0101s0046' => 'mpo', 'MBI04_g30218_MAGBIO' => 'mbi', 'MBI04_g35564_MAGBIO' => 'mbi', 'MBI12_g34011_MAGBIO' => 'mbi', 'MBI14_g04655_MAGBIO' => 'mbi', 'MCO07G653' => 'mco', 'MCO10G173' => 'mco', 'MD01G1087100' => 'mdo', 'MD01G1104200' => 'mdo', 'MD02G1205100' => 'mdo', 'MD04G1079200' => 'mdo', 'MD04G1131400' => 'mdo', 'MD07G1121600' => 'mdo', 'MD07G1157300' => 'mdo', 'MD07G1171000' => 'mdo', 'MD12G1144500' => 'mdo', 'Medtr1g094610' => 'mtr', 'Medtr4g021795' => 'mtr', 'Medtr4g023760' => 'mtr', 'Medtr7g118050' => 'mtr', 'MELO3C005582.2' => 'cme', 'MELO3C005989.2' => 'cme', 'MELO3C006192.2' => 'cme', 'MELO3C009248.2' => 'cme', 'MELO3C019817.2' => 'cme', 'Migut.B01625' => 'egut', 'Migut.B01915' => 'egut', 'Migut.F01721' => 'egut', 'Migut.J00314' => 'egut', 'MSTRG.20742' => 'ama', 'MSTRG.8134' => 'ama', 'Nitab4.5_0000096g0010' => 'nta', 'Nitab4.5_0000202g0030' => 'nta', 'Nitab4.5_0000216g0370' => 'nta', 'Nitab4.5_0000457g0230' => 'nta', 'Nitab4.5_0001702g0170' => 'nta', 'Nitab4.5_0003607g0010' => 'nta', 'Nitab4.5_0004917g0020' => 'nta', 'Nitab4.5_0007059g0010' => 'nta', 'Nitab4.5_0007184g0010' => 'nta', 'Nitab4.5_0007346g0020' => 'nta', 'Nn1g00410' => 'nnu', 'Nn1g01252' => 'nnu', 'Nn2g11168' => 'nnu', 'Nn2g13403' => 'nnu', 'Nn2g13760' => 'nnu', 'Nn4g26380' => 'nnu', 'Oeu000806.2' => 'oeu', 'Oeu005788.1' => 'oeu', 'Oeu006900.3' => 'oeu', 'Oeu007797.1' => 'oeu', 'Oeu011932.1' => 'oeu', 'Oeu022739.1' => 'oeu', 'Oeu037918.1' => 'oeu', 'Oeu055490.2' => 'oeu', 'Os01g0844400' => 'osa', 'Os02g0819100' => 'osa', 'Os03g0804300' => 'osa', 'Os05g0458000' => 'osa', 'Os07g0467800' => 'osa', 'Os12g0602200' => 'osa', 'Peaxi162Scf00013g03444' => 'pax', 'Peaxi162Scf00094g01120' => 'pax', 'Peaxi162Scf00191g01211' => 'pax', 'Peaxi162Scf00238g01110' => 'pax', 'Peaxi162Scf00330g00719' => 'pax', 'Peaxi162Scf00627g00018' => 'pax', 'PGR031G2686' => 'pgr', 'PGR042G0809' => 'pgr', 'PGR142G0193' => 'pgr', 'PGSC0003DMG400011066' => 'stu', 'PGSC0003DMG400012041' => 'stu', 'PGSC0003DMG400013678' => 'stu', 'PGSC0003DMG400023477' => 'stu', 'PGSC0003DMG400025956' => 'stu', 'PGSC0003DMG401019151' => 'stu', 'Phvul.006G116400' => 'pvu', 'Phvul.007G097300' => 'pvu', 'Phvul.010G015000' => 'pvu', 'Phvul.010G083900' => 'pvu', 'Potri.001G117100' => 'ptr', 'Potri.002G147300' => 'ptr', 'Potri.003G115600' => 'ptr', 'Potri.006G087400' => 'ptr', 'Potri.010G226100' => 'ptr', 'Potri.014G069200' => 'ptr', 'Potri.014G104000' => 'ptr', 'Potri.016G100200' => 'ptr', 'Pp3c10_20450' => 'ppa', 'Pp3c1_42400' => 'ppa', 'Pp3c3_24390' => 'ppa', 'Pp3c3_2860' => 'ppa', 'PRCOL_00003193' => 'pco', 'Prupe.2G144500' => 'ppe', 'Prupe.2G195700' => 'ppe', 'Prupe.2G209800' => 'ppe', 'Prupe.5G080000' => 'ppe', 'Prupe.6G257900' => 'ppe', 'Psat3g001160' => 'psa', 'Psat6g181880' => 'psa', 'Psat7g233720' => 'psa', 'PSO063G7587' => 'pso', 'PSO339G2145' => 'pso', 'PSO339G3369' => 'pso', 'PSO478G2747' => 'pso', 'PSO513G0140' => 'pso', 'PSO782G1614' => 'pso', 'PSO782G4889' => 'pso', 'PSO782G5485' => 'pso', 'PSO801G0241' => 'pso', 'QL07p048854' => 'qlo', 'QL08p046745' => 'qlo', 'QL08p052606' => 'qlo', 'QL08p053414' => 'qlo', 'QL08p054868' => 'qlo', 'RcHm_v2.0_Chr1g0350251' => 'rch', 'RcHm_v2.0_Chr1g0360851' => 'rch', 'RcHm_v2.0_Chr1g0362791' => 'rch', 'RcHm_v2.0_Chr3g0466281' => 'rch', 'RcHm_v2.0_Chr7g0201481' => 'rch', 'Rhsim01G0148600' => 'rsi', 'Rhsim05G0194400' => 'rsi', 'Rhsim07G0000700' => 'rsi', 'Rhsim07G0000800' => 'rsi', 'Rhsim07G0027900' => 'rsi', 'Rhsim09G0149500' => 'rsi', 'RhsimUnG0186900' => 'rsi', 'Sabra01G0089900' => 'sbr', 'Sabra02G0114700' => 'sbr', 'Sabra02G0116300' => 'sbr', 'Sabra03G0080100' => 'sbr', 'Sabra08G0024300' => 'sbr', 'Sabra10G0174300' => 'sbr', 'Sabra14G0048900' => 'sbr', 'Sabra14G0076500' => 'sbr', 'SalBow5G2513' => 'sbo', 'Sc01g0002300' => 'sci', 'Sc01g0004450' => 'sci', 'Sc06g0001680' => 'sci', 'Sc23g0003580' => 'sci', 'Sed0000913' => 'sed', 'Sed0001655' => 'sed', 'Sed0007745' => 'sed', 'Sed0010951' => 'sed', 'Sed0017599' => 'sed', 'Sed0021405' => 'sed', 'Sed0022810' => 'sed', 'SEGI_07099' => 'sgi', 'SEGI_11931' => 'sgi', 'SEGI_13187' => 'sgi', 'SEGI_29958' => 'sgi', 'SEGI_36351' => 'sgi', 'SGA_v2.0_scaffold126G33770' => 'sas', 'SGA_v2.0_scaffold153G37003' => 'sas', 'SGA_v2.0_scaffold2G01359' => 'sas', 'SGA_v2.0_scaffold5G03064' => 'sas', 'SGA_v2.0_scaffold95G28903' => 'sas', 'SHI12701' => 'shi', 'SHI26410' => 'shi', 'SHI38997' => 'shi', 'SHI53759' => 'shi', 'SHI53886' => 'shi', 'SHI54714' => 'shi', 'SMO011G0041' => 'smo', 'SMO146G0251' => 'smo', 'SMO160G0004' => 'smo', 'SMO174G0057' => 'smo', 'SMO244G0089' => 'smo', 'SMO296G0011' => 'smo', 'Solyc01g091280.3' => 'sly', 'Solyc05g047610.3' => 'sly', 'Solyc05g047640.3' => 'sly', 'Solyc05g055630.3' => 'sly', 'Solyc10g018160.2' => 'sly', 'Solyc10g084820.2' => 'sly', 'Solyc10g086565.2' => 'sly', 'Sopen01g037030' => 'spe', 'Sopen05g027920' => 'spe', 'Sopen05g034070' => 'spe', 'Sopen10g007260' => 'spe', 'Sopen10g034260' => 'spe', 'Sopen10g035950' => 'spe', 'Sp3g07710' => 'spa', 'Sp4g27420' => 'spa', 'Sp5g02450' => 'spa', 'Sp6g01280' => 'spa', 'Sp6g38480' => 'spa', 'Sp7g20780' => 'spa', 'TAR374G1413' => 'tar', 'TAR623G1777' => 'tar', 'TAR629G2370' => 'tar', 'TAR633G1759' => 'tar', 'TAR636G3387' => 'tar', 'THA.LOC104802447' => 'tha', 'THA.LOC104813916' => 'tha', 'THA.LOC104816423' => 'tha', 'THA.LOC104817246' => 'tha', 'THA.LOC104825895' => 'tha', 'Thecc.01G335200' => 'tca', 'Thecc.01G377400' => 'tca', 'Thecc.03G262200' => 'tca', 'Thecc.05G036800' => 'tca', 'Thecc.10G080500' => 'tca', 'Thecc.10G080800' => 'tca', 'Thhalv10001560m.g' => 'esa', 'Thhalv10006120m.g' => 'esa', 'Thhalv10014375m.g' => 'esa', 'Thhalv10021264m.g' => 'esa', 'Thhalv10028856m.g' => 'esa', 'TPR.G1914' => 'tpr', 'TPR.G4757' => 'tpr', 'TPR.G5595' => 'tpr', 'TWI14G0952' => 'twi', 'TWI14G1307' => 'twi', 'TWI38G2143' => 'twi', 'TWI59G0826' => 'twi', 'TWI77G0527' => 'twi', 'TWI81G0150' => 'twi', 'unitig_21.g21018' => 'ugi', 'unitig_26.g9725' => 'ugi', 'unitig_744.g24653' => 'ugi', 'unitig_749.g13778' => 'ugi', 'unitig_899.g15035' => 'ugi', 'vmacro04296' => 'vma', 'vmacro04852' => 'vma', 'vmacro13404' => 'vma', 'vmacro20169' => 'vma', 'vmacro21014' => 'vma', 'VMungo0331G0237' => 'vmu', 'VMungo0331G0706' => 'vmu', 'VMungo0331G1361' => 'vmu', 'VMungo0331G1489' => 'vmu', 'VMungo0540G1037' => 'vmu', 'VMungo0720G2487' => 'vmu', 'VMungo0720G2721' => 'vmu', 'Zm00001eb086860' => 'zma', 'Zm00001eb104760' => 'zma', 'Zm00001eb148220' => 'zma', 'Zm00001eb259030' => 'zma', 'Zm00001eb289590' => 'zma', 'Zm00001eb420150' => 'zma' ), 'gf_id' => 'HOM05D000968', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000968' ), 'data_identifier' => 'HOM05D000968', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000968', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p31690' => 'bna', 'A03p36040' => 'bna', 'A03p53730' => 'bna', 'A04p01410' => 'bna', 'A05p05420' => 'bna', 'A05p39630' => 'bna', 'A05p39640' => 'bna', 'A09p00970' => 'bna', 'A09p53060' => 'bna', 'A10p31890' => 'bna', 'Aa31LG10G15040' => 'aar', 'Aa31LG1G21090' => 'aar', 'Aa31LG1G26900' => 'aar', 'Aa31LG3G1820' => 'aar', 'Aa31LG5G1100' => 'aar', 'Aa31LG6G4740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2265' => 'aag', 'Actinidia07998' => 'ach', 'Actinidia11266' => 'ach', 'Actinidia12682' => 'ach', 'Actinidia26479' => 'ach', 'Actinidia31406' => 'ach', 'Actinidia32437' => 'ach', 'Actinidia38862' => 'ach', 'Ah.05g174230' => 'amhyb', 'Ah.05g179070' => 'amhyb', 'Ah.05g179090' => 'amhyb', 'Ah.12g059950' => 'amhyb', 'AL3G20480' => 'aly', 'AL4G44520' => 'aly', 'AL5G43110' => 'aly', 'AL6G13890' => 'aly', 'AL6G52620' => 'aly', 'AL7G30830' => 'aly', 'Aqoxy1G00899' => 'aox', 'Aqoxy5G04333' => 'aox', 'Aqoxy7G00641' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3IZ0NN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4EF6AW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W9P8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79GA3M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C43NQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFCU6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G95YVJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCHK29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LU1UG8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX91RN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGB4B1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8DA0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9H7JI' => 'arhy', 'AT3G09320' => 'ath', 'AT3G60800' => 'ath', 'AT4G00840' => 'ath', 'AT4G22750' => 'ath', 'AT5G04270' => 'ath', 'ATR0090G003' => 'atr', 'ATR0559G349' => 'atr', 'ATR0680G261' => 'atr', 'ATR0810G048' => 'atr', 'Atru.chr12.831' => 'acertr', 'Atru.chr5.303' => 'acertr', 'Atru.chr5.748' => 'acertr', 'Atru.chr8.1999' => 'acertr', 'Atru.chr9.1436' => 'acertr', 'AUR62004211' => 'cqu', 'AUR62004548' => 'cqu', 'AUR62013637' => 'cqu', 'AUR62022662' => 'cqu', 'AUR62025777' => 'cqu', 'AUR62042386' => 'cqu', 'BcaB01g02310' => 'bca', 'BcaB01g06062' => 'bca', 'BcaB02g08975' => 'bca', 'BcaB02g08980' => 'bca', 'BcaC01g04228' => 'bca', 'BcaC01g06830' => 'bca', 'BcaC02g10186' => 'bca', 'BcaC02g12214' => 'bca', 'BcaC04g24101' => 'bca', 'BcaC05g29520' => 'bca', 'BcaC05g29661' => 'bca', 'BcaC06g32130' => 'bca', 'BcaC06g32131' => 'bca', 'BcaC07g40601' => 'bca', 'BcaC07g42641' => 'bca', 'BcaNung01038' => 'bca', 'BcaNung01676' => 'bca', 'BcaNung02480' => 'bca', 'BcaNung07376' => 'bca', 'BolC3t16146H' => 'bol', 'BolC3t16637H' => 'bol', 'BolC4t22257H' => 'bol', 'BolC4t24728H' => 'bol', 'BolC5t34517H' => 'bol', 'BolC7t45703H' => 'bol', 'BolC8t51166H' => 'bol', 'BolC9t53038H' => 'bol', 'BolC9t60000H' => 'bol', 'BraA01t01345Z' => 'bra', 'BraA01t01346Z' => 'bra', 'BraA01t01348Z' => 'bra', 'BraA03t12347Z' => 'bra', 'BraA03t12775Z' => 'bra', 'BraA03t14439Z' => 'bra', 'BraA04t15860Z' => 'bra', 'BraA05t19511Z' => 'bra', 'BraA05t22746Z' => 'bra', 'BraA09t35767Z' => 'bra', 'BraA09t40732Z' => 'bra', 'BraA10t45233Z' => 'bra', 'C03p38720' => 'bna', 'C03p43680' => 'bna', 'C04p06350' => 'bna', 'C04p31800' => 'bna', 'C05p58680' => 'bna', 'C07p52110' => 'bna', 'C08p35760' => 'bna', 'C09p01050' => 'bna', 'C09p72600' => 'bna', 'CAN.G106.2' => 'can', 'CAN.G1482.1' => 'can', 'CAN.G324.12' => 'can', 'CAN.G388.20' => 'can', 'CAN.G412.7' => 'can', 'CAN.G694.32' => 'can', 'CAN.G92.12' => 'can', 'CANSAT11G2353' => 'cansat', 'CANSAT21G1398' => 'cansat', 'CANSAT56G2456' => 'cansat', 'CANSAT56G3031' => 'cansat', 'CANSAT56G4539' => 'cansat', 'CARHR083680' => 'chi', 'CARHR171190' => 'chi', 'CARHR209010' => 'chi', 'CARHR229680' => 'chi', 'CARHR249490' => 'chi', 'Carub.0003s0844' => 'cru', 'Carub.0005s2755' => 'cru', 'Carub.0006s0322' => 'cru', 'Carub.0006s3586' => 'cru', 'Carub.0007s1855' => 'cru', 'Ca_07808_v3' => 'car', 'Ca_09535_v3' => 'car', 'Ca_10548_v3' => 'car', 'Ca_19913_v3' => 'car', 'Ca_19916_v3' => 'car', 'Ca_19975_v3' => 'car', 'CBR_g22876' => 'cbr', 'CBR_g22879' => 'cbr', 'CBR_g38491' => 'cbr', 'CBR_g54185' => 'cbr', 'CBR_g54190' => 'cbr', 'Cc02_g11020' => 'ccan', 'Cc02_g23920' => 'ccan', 'Cc02_g39860' => 'ccan', 'Cc02_g39870' => 'ccan', 'Cc03_g06760' => 'ccan', 'Cc06_g02450' => 'ccan', 'Cc09_g09450' => 'ccan', 'CDE02G1959' => 'cde', 'CDE04G0600' => 'cde', 'CDE07G1996' => 'cde', 'CDE07G2078' => 'cde', 'CDE11G0611' => 'cde', 'Cfa001683' => 'cfa', 'Cfa001734' => 'cfa', 'Cfa001737' => 'cfa', 'Cfa003751' => 'cfa', 'Cfa012019' => 'cfa', 'Cfa017353' => 'cfa', 'Cfa017732' => 'cfa', 'Cfa022464' => 'cfa', 'Ciclev10012400m.g' => 'ccl', 'Ciclev10021242m.g' => 'ccl', 'Ciclev10021302m.g' => 'ccl', 'Ciclev10021463m.g' => 'ccl', 'Ciclev10032359m.g' => 'ccl', 'CiPaw.01G081000' => 'cil', 'CiPaw.01G262500' => 'cil', 'CiPaw.01G269800' => 'cil', 'CiPaw.02G168400' => 'cil', 'CiPaw.05G119500' => 'cil', 'CiPaw.11G147300' => 'cil', 'ClCG01G003630' => 'cla', 'ClCG05G000510' => 'cla', 'ClCG05G002300' => 'cla', 'ClCG08G007650' => 'cla', 'ClCG10G021250' => 'cla', 'COL.COLO4_06218' => 'col', 'COL.COLO4_12538' => 'col', 'COL.COLO4_14775' => 'col', 'COL.COLO4_23875' => 'col', 'Cpa.g.sc141.16' => 'cpa', 'Cpa.g.sc169.16' => 'cpa', 'Cpa.g.sc244.4' => 'cpa', 'Cpa.g.sc244.5' => 'cpa', 'Cpa.g.sc29.87' => 'cpa', 'Cpa.g.sc53.115' => 'cpa', 'Cre03.g207502' => 'cre', 'Cre06.g277000' => 'cre', 'Cre09.g394050' => 'cre', 'CsaV3_3G007680' => 'csa', 'CsaV3_3G009710' => 'csa', 'CsaV3_3G034790' => 'csa', 'CsaV3_5G003750' => 'csa', 'CsaV3_6G036620' => 'csa', 'CSS0002288' => 'camsi', 'CSS0011250' => 'camsi', 'CSS0021619' => 'camsi', 'CSS0046701' => 'camsi', 'DCAR_006420' => 'dca', 'DCAR_006865' => 'dca', 'DCAR_008558' => 'dca', 'DCAR_028754' => 'dca', 'DCAR_028755' => 'dca', 'Dinv31218' => 'din', 'Dinv32371' => 'din', 'Dinv34250' => 'din', 'Dinv37156' => 'din', 'Dinv43704' => 'din', 'Duzib093G1811' => 'dzi', 'Duzib106G1622' => 'dzi', 'Duzib114G0504' => 'dzi', 'Duzib128G0338' => 'dzi', 'Duzib128G1577' => 'dzi', 'Duzib133G0104' => 'dzi', 'Duzib133G1080' => 'dzi', 'Duzib138G0324' => 'dzi', 'Duzib138G0394' => 'dzi', 'Duzib205G0122' => 'dzi', 'Duzib268G1020' => 'dzi', 'Duzib268G1359' => 'dzi', 'ECA232G3929' => 'eca', 'ECA236G2210' => 'eca', 'ECA236G2287' => 'eca', 'ECA240G4568' => 'eca', 'ECA247G0894' => 'eca', 'EL10Ac1g00200' => 'bvu', 'EL10Ac1g00886' => 'bvu', 'EL10As1g23091' => 'bvu', 'EL10As1g23092' => 'bvu', 'Eucgr.A01284' => 'egr', 'Eucgr.A01285' => 'egr', 'Eucgr.D02456' => 'egr', 'Eucgr.E00018' => 'egr', 'Eucgr.E01439' => 'egr', 'Eucgr.G02859' => 'egr', 'FAN01G0168' => 'fan', 'FAN01G0453' => 'fan', 'FAN01G2761' => 'fan', 'FAN02G1239' => 'fan', 'FAN03G0645' => 'fan', 'FAN03G2707' => 'fan', 'FAN03G2978' => 'fan', 'FAN04G0227' => 'fan', 'FAN06G0091' => 'fan', 'FAN06G1418' => 'fan', 'FAN06G1512' => 'fan', 'FAN06G1986' => 'fan', 'FAN06G2905' => 'fan', 'FAN06G4325' => 'fan', 'FAN08G0033' => 'fan', 'FAN09G0642' => 'fan', 'FAN10G1763' => 'fan', 'FAN10G2026' => 'fan', 'FAN10G2513' => 'fan', 'FAN10G3402' => 'fan', 'FAN10G3564' => 'fan', 'FAN10G3987' => 'fan', 'FAN13G1490' => 'fan', 'FAN14G5857' => 'fan', 'FAN18G1188' => 'fan', 'FvH4_5g00750' => 'fve', 'FvH4_6g13410' => 'fve', 'FvH4_7g11740' => 'fve', 'FvH4_7g17410' => 'fve', 'FvH4_7g18860' => 'fve', 'Glyma.01G099100' => 'gma', 'Glyma.01G142300' => 'gma', 'Glyma.03G025500' => 'gma', 'Glyma.03G069700' => 'gma', 'Glyma.03G260000' => 'gma', 'Glyma.09G269800' => 'gma', 'Glyma.10G208700' => 'gma', 'Glyma.18G220400' => 'gma', 'Glyma.20G182000' => 'gma', 'Gohir.A01G221726' => 'ghi', 'Gohir.A07G134600' => 'ghi', 'Gohir.A07G146000' => 'ghi', 'Gohir.A08G173900' => 'ghi', 'Gohir.A09G194900' => 'ghi', 'Gohir.A10G204100' => 'ghi', 'Gohir.A11G080600' => 'ghi', 'Gohir.A11G327500' => 'ghi', 'Gohir.A12G101800' => 'ghi', 'Gohir.D01G211200' => 'ghi', 'Gohir.D07G139200' => 'ghi', 'Gohir.D07G152100' => 'ghi', 'Gohir.D08G192600' => 'ghi', 'Gohir.D09G189200' => 'ghi', 'Gohir.D10G212000' => 'ghi', 'Gohir.D11G085200' => 'ghi', 'Gohir.D11G346400' => 'ghi', 'Gohir.D12G104800' => 'ghi', 'Gorai.001G151300' => 'gra', 'Gorai.001G174100' => 'gra', 'Gorai.002G257000' => 'gra', 'Gorai.004G202600' => 'gra', 'Gorai.007G090900' => 'gra', 'Gorai.007G376700' => 'gra', 'Gorai.008G114100' => 'gra', 'Gorai.011G237900' => 'gra', 'GSVIVG01005450001' => 'vvi', 'GSVIVG01016232001' => 'vvi', 'GSVIVG01026157001' => 'vvi', 'GSVIVG01027419001' => 'vvi', 'GSVIVG01027631001' => 'vvi', 'GSVIVG01034143001' => 'vvi', 'HanXRQChr03g0093921' => 'han', 'HanXRQChr04g0120001' => 'han', 'HanXRQChr04g0122561' => 'han', 'HanXRQChr09g0246851' => 'han', 'HanXRQChr10g0293311' => 'han', 'HanXRQChr13g0425231' => 'han', 'HanXRQChr16g0532571' => 'han', 'Haze_09050' => 'cav', 'Haze_15715' => 'cav', 'Haze_15716' => 'cav', 'Haze_16803' => 'cav', 'Haze_16850' => 'cav', 'Hma1.2p1_0301F.1_g118655' => 'hma', 'Hma1.2p1_0309F.1_g120590' => 'hma', 'Hma1.2p1_0936F.1_g238900' => 'hma', 'Hma1.2p1_3552F.1_g336740' => 'hma', 'HPP92_003520' => 'vpl', 'HPP92_006628' => 'vpl', 'HPP92_006645' => 'vpl', 'HPP92_014669' => 'vpl', 'HPP92_015077' => 'vpl', 'Hund16742' => 'sun', 'Hund17022' => 'sun', 'Lalb_Chr02g0152131' => 'lal', 'Lalb_Chr05g0225371' => 'lal', 'Lalb_Chr07g0189841' => 'lal', 'Lalb_Chr07g0192961' => 'lal', 'Lalb_Chr12g0208221' => 'lal', 'Lalb_Chr13g0291211' => 'lal', 'Lalb_Chr13g0291781' => 'lal', 'Lalb_Chr18g0044651' => 'lal', 'Lalb_Chr21g0313731' => 'lal', 'Lj1g0022533' => 'lja', 'Lj2A18T50' => 'lonja', 'Lj2A92G93' => 'lonja', 'Lj3A965T73' => 'lonja', 'Lj3g0000673' => 'lja', 'Lj3g0002666' => 'lja', 'Lj4g0016985' => 'lja', 'Lj5g0003625' => 'lja', 'Lj7A529G36' => 'lonja', 'Lj9A569T49' => 'lonja', 'Lj9A604T63' => 'lonja', 'Lsat_1_v5_gn_3_132060' => 'lsa', 'Lsat_1_v5_gn_4_68941' => 'lsa', 'Lsat_1_v5_gn_5_95580' => 'lsa', 'Lsat_1_v5_gn_7_161' => 'lsa', 'Lsat_1_v5_gn_7_7041' => 'lsa', 'Lsat_1_v5_gn_9_33481' => 'lsa', 'Lsat_1_v5_gn_9_68260' => 'lsa', 'Manes.01G073100' => 'mes', 'Manes.01G266300' => 'mes', 'Manes.02G033300' => 'mes', 'Manes.05G017900' => 'mes', 'Manes.05G046100' => 'mes', 'Manes.08G080900' => 'mes', 'Manes.10G049400' => 'mes', 'Mapoly0009s0186' => 'mpo', 'Mapoly0036s0118' => 'mpo', 'Mapoly0101s0046' => 'mpo', 'MBI04_g30218_MAGBIO' => 'mbi', 'MBI04_g35564_MAGBIO' => 'mbi', 'MBI12_g34011_MAGBIO' => 'mbi', 'MBI14_g04655_MAGBIO' => 'mbi', 'MCO07G653' => 'mco', 'MCO10G173' => 'mco', 'MD01G1087100' => 'mdo', 'MD01G1104200' => 'mdo', 'MD02G1205100' => 'mdo', 'MD04G1079200' => 'mdo', 'MD04G1131400' => 'mdo', 'MD07G1121600' => 'mdo', 'MD07G1157300' => 'mdo', 'MD07G1171000' => 'mdo', 'MD12G1144500' => 'mdo', 'Medtr1g094610' => 'mtr', 'Medtr4g021795' => 'mtr', 'Medtr4g023760' => 'mtr', 'Medtr7g118050' => 'mtr', 'MELO3C005582.2' => 'cme', 'MELO3C005989.2' => 'cme', 'MELO3C006192.2' => 'cme', 'MELO3C009248.2' => 'cme', 'MELO3C019817.2' => 'cme', 'Migut.B01625' => 'egut', 'Migut.B01915' => 'egut', 'Migut.F01721' => 'egut', 'Migut.J00314' => 'egut', 'MSTRG.20742' => 'ama', 'MSTRG.8134' => 'ama', 'Nitab4.5_0000096g0010' => 'nta', 'Nitab4.5_0000202g0030' => 'nta', 'Nitab4.5_0000216g0370' => 'nta', 'Nitab4.5_0000457g0230' => 'nta', 'Nitab4.5_0001702g0170' => 'nta', 'Nitab4.5_0003607g0010' => 'nta', 'Nitab4.5_0004917g0020' => 'nta', 'Nitab4.5_0007059g0010' => 'nta', 'Nitab4.5_0007184g0010' => 'nta', 'Nitab4.5_0007346g0020' => 'nta', 'Nn1g00410' => 'nnu', 'Nn1g01252' => 'nnu', 'Nn2g11168' => 'nnu', 'Nn2g13403' => 'nnu', 'Nn2g13760' => 'nnu', 'Nn4g26380' => 'nnu', 'Oeu000806.2' => 'oeu', 'Oeu005788.1' => 'oeu', 'Oeu006900.3' => 'oeu', 'Oeu007797.1' => 'oeu', 'Oeu011932.1' => 'oeu', 'Oeu022739.1' => 'oeu', 'Oeu037918.1' => 'oeu', 'Oeu055490.2' => 'oeu', 'Os01g0844400' => 'osa', 'Os02g0819100' => 'osa', 'Os03g0804300' => 'osa', 'Os05g0458000' => 'osa', 'Os07g0467800' => 'osa', 'Os12g0602200' => 'osa', 'Peaxi162Scf00013g03444' => 'pax', 'Peaxi162Scf00094g01120' => 'pax', 'Peaxi162Scf00191g01211' => 'pax', 'Peaxi162Scf00238g01110' => 'pax', 'Peaxi162Scf00330g00719' => 'pax', 'Peaxi162Scf00627g00018' => 'pax', 'PGR031G2686' => 'pgr', 'PGR042G0809' => 'pgr', 'PGR142G0193' => 'pgr', 'PGSC0003DMG400011066' => 'stu', 'PGSC0003DMG400012041' => 'stu', 'PGSC0003DMG400013678' => 'stu', 'PGSC0003DMG400023477' => 'stu', 'PGSC0003DMG400025956' => 'stu', 'PGSC0003DMG401019151' => 'stu', 'Phvul.006G116400' => 'pvu', 'Phvul.007G097300' => 'pvu', 'Phvul.010G015000' => 'pvu', 'Phvul.010G083900' => 'pvu', 'Potri.001G117100' => 'ptr', 'Potri.002G147300' => 'ptr', 'Potri.003G115600' => 'ptr', 'Potri.006G087400' => 'ptr', 'Potri.010G226100' => 'ptr', 'Potri.014G069200' => 'ptr', 'Potri.014G104000' => 'ptr', 'Potri.016G100200' => 'ptr', 'Pp3c10_20450' => 'ppa', 'Pp3c1_42400' => 'ppa', 'Pp3c3_24390' => 'ppa', 'Pp3c3_2860' => 'ppa', 'PRCOL_00003193' => 'pco', 'Prupe.2G144500' => 'ppe', 'Prupe.2G195700' => 'ppe', 'Prupe.2G209800' => 'ppe', 'Prupe.5G080000' => 'ppe', 'Prupe.6G257900' => 'ppe', 'Psat3g001160' => 'psa', 'Psat6g181880' => 'psa', 'Psat7g233720' => 'psa', 'PSO063G7587' => 'pso', 'PSO339G2145' => 'pso', 'PSO339G3369' => 'pso', 'PSO478G2747' => 'pso', 'PSO513G0140' => 'pso', 'PSO782G1614' => 'pso', 'PSO782G4889' => 'pso', 'PSO782G5485' => 'pso', 'PSO801G0241' => 'pso', 'QL07p048854' => 'qlo', 'QL08p046745' => 'qlo', 'QL08p052606' => 'qlo', 'QL08p053414' => 'qlo', 'QL08p054868' => 'qlo', 'RcHm_v2.0_Chr1g0350251' => 'rch', 'RcHm_v2.0_Chr1g0360851' => 'rch', 'RcHm_v2.0_Chr1g0362791' => 'rch', 'RcHm_v2.0_Chr3g0466281' => 'rch', 'RcHm_v2.0_Chr7g0201481' => 'rch', 'Rhsim01G0148600' => 'rsi', 'Rhsim05G0194400' => 'rsi', 'Rhsim07G0000700' => 'rsi', 'Rhsim07G0000800' => 'rsi', 'Rhsim07G0027900' => 'rsi', 'Rhsim09G0149500' => 'rsi', 'RhsimUnG0186900' => 'rsi', 'Sabra01G0089900' => 'sbr', 'Sabra02G0114700' => 'sbr', 'Sabra02G0116300' => 'sbr', 'Sabra03G0080100' => 'sbr', 'Sabra08G0024300' => 'sbr', 'Sabra10G0174300' => 'sbr', 'Sabra14G0048900' => 'sbr', 'Sabra14G0076500' => 'sbr', 'SalBow5G2513' => 'sbo', 'Sc01g0002300' => 'sci', 'Sc01g0004450' => 'sci', 'Sc06g0001680' => 'sci', 'Sc23g0003580' => 'sci', 'Sed0000913' => 'sed', 'Sed0001655' => 'sed', 'Sed0007745' => 'sed', 'Sed0010951' => 'sed', 'Sed0017599' => 'sed', 'Sed0021405' => 'sed', 'Sed0022810' => 'sed', 'SEGI_07099' => 'sgi', 'SEGI_11931' => 'sgi', 'SEGI_13187' => 'sgi', 'SEGI_29958' => 'sgi', 'SEGI_36351' => 'sgi', 'SGA_v2.0_scaffold126G33770' => 'sas', 'SGA_v2.0_scaffold153G37003' => 'sas', 'SGA_v2.0_scaffold2G01359' => 'sas', 'SGA_v2.0_scaffold5G03064' => 'sas', 'SGA_v2.0_scaffold95G28903' => 'sas', 'SHI12701' => 'shi', 'SHI26410' => 'shi', 'SHI38997' => 'shi', 'SHI53759' => 'shi', 'SHI53886' => 'shi', 'SHI54714' => 'shi', 'SMO011G0041' => 'smo', 'SMO146G0251' => 'smo', 'SMO160G0004' => 'smo', 'SMO174G0057' => 'smo', 'SMO244G0089' => 'smo', 'SMO296G0011' => 'smo', 'Solyc01g091280.3' => 'sly', 'Solyc05g047610.3' => 'sly', 'Solyc05g047640.3' => 'sly', 'Solyc05g055630.3' => 'sly', 'Solyc10g018160.2' => 'sly', 'Solyc10g084820.2' => 'sly', 'Solyc10g086565.2' => 'sly', 'Sopen01g037030' => 'spe', 'Sopen05g027920' => 'spe', 'Sopen05g034070' => 'spe', 'Sopen10g007260' => 'spe', 'Sopen10g034260' => 'spe', 'Sopen10g035950' => 'spe', 'Sp3g07710' => 'spa', 'Sp4g27420' => 'spa', 'Sp5g02450' => 'spa', 'Sp6g01280' => 'spa', 'Sp6g38480' => 'spa', 'Sp7g20780' => 'spa', 'TAR374G1413' => 'tar', 'TAR623G1777' => 'tar', 'TAR629G2370' => 'tar', 'TAR633G1759' => 'tar', 'TAR636G3387' => 'tar', 'THA.LOC104802447' => 'tha', 'THA.LOC104813916' => 'tha', 'THA.LOC104816423' => 'tha', 'THA.LOC104817246' => 'tha', 'THA.LOC104825895' => 'tha', 'Thecc.01G335200' => 'tca', 'Thecc.01G377400' => 'tca', 'Thecc.03G262200' => 'tca', 'Thecc.05G036800' => 'tca', 'Thecc.10G080500' => 'tca', 'Thecc.10G080800' => 'tca', 'Thhalv10001560m.g' => 'esa', 'Thhalv10006120m.g' => 'esa', 'Thhalv10014375m.g' => 'esa', 'Thhalv10021264m.g' => 'esa', 'Thhalv10028856m.g' => 'esa', 'TPR.G1914' => 'tpr', 'TPR.G4757' => 'tpr', 'TPR.G5595' => 'tpr', 'TWI14G0952' => 'twi', 'TWI14G1307' => 'twi', 'TWI38G2143' => 'twi', 'TWI59G0826' => 'twi', 'TWI77G0527' => 'twi', 'TWI81G0150' => 'twi', 'unitig_21.g21018' => 'ugi', 'unitig_26.g9725' => 'ugi', 'unitig_744.g24653' => 'ugi', 'unitig_749.g13778' => 'ugi', 'unitig_899.g15035' => 'ugi', 'vmacro04296' => 'vma', 'vmacro04852' => 'vma', 'vmacro13404' => 'vma', 'vmacro20169' => 'vma', 'vmacro21014' => 'vma', 'VMungo0331G0237' => 'vmu', 'VMungo0331G0706' => 'vmu', 'VMungo0331G1361' => 'vmu', 'VMungo0331G1489' => 'vmu', 'VMungo0540G1037' => 'vmu', 'VMungo0720G2487' => 'vmu', 'VMungo0720G2721' => 'vmu', 'Zm00001eb086860' => 'zma', 'Zm00001eb104760' => 'zma', 'Zm00001eb148220' => 'zma', 'Zm00001eb259030' => 'zma', 'Zm00001eb289590' => 'zma', 'Zm00001eb420150' => 'zma' ) $gf_id = 'HOM05D000968' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000968' ) $data_identifier = 'HOM05D000968' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 19, 'bol' => (int) 9, 'bra' => (int) 12, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 5, 'ccan' => (int) 7, 'cde' => (int) 5, 'cfa' => (int) 8, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 4, 'dca' => (int) 5, 'din' => (int) 5, 'dzi' => (int) 12, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 25, 'fve' => (int) 5, 'gma' => (int) 9, 'ghi' => (int) 18, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 7, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 5, 'sun' => (int) 2, 'lal' => (int) 9, 'lja' => (int) 5, 'lonja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 9, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 2, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 3, 'stu' => (int) 6, 'pvu' => (int) 4, 'ptr' => (int) 8, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 3, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 1, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 5, 'sas' => (int) 5, 'shi' => (int) 6, 'smo' => (int) 6, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 3, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420150' $species_info = array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ) $local_species = 'aly' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000968', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p31690' => 'bna', 'A03p36040' => 'bna', 'A03p53730' => 'bna', 'A04p01410' => 'bna', 'A05p05420' => 'bna', 'A05p39630' => 'bna', 'A05p39640' => 'bna', 'A09p00970' => 'bna', 'A09p53060' => 'bna', 'A10p31890' => 'bna', 'Aa31LG10G15040' => 'aar', 'Aa31LG1G21090' => 'aar', 'Aa31LG1G26900' => 'aar', 'Aa31LG3G1820' => 'aar', 'Aa31LG5G1100' => 'aar', 'Aa31LG6G4740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2265' => 'aag', 'Actinidia07998' => 'ach', 'Actinidia11266' => 'ach', 'Actinidia12682' => 'ach', 'Actinidia26479' => 'ach', 'Actinidia31406' => 'ach', 'Actinidia32437' => 'ach', 'Actinidia38862' => 'ach', 'Ah.05g174230' => 'amhyb', 'Ah.05g179070' => 'amhyb', 'Ah.05g179090' => 'amhyb', 'Ah.12g059950' => 'amhyb', 'AL3G20480' => 'aly', 'AL4G44520' => 'aly', 'AL5G43110' => 'aly', 'AL6G13890' => 'aly', 'AL6G52620' => 'aly', 'AL7G30830' => 'aly', 'Aqoxy1G00899' => 'aox', 'Aqoxy5G04333' => 'aox', 'Aqoxy7G00641' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3IZ0NN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4EF6AW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W9P8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79GA3M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C43NQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFCU6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G95YVJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCHK29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LU1UG8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX91RN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGB4B1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8DA0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9H7JI' => 'arhy', 'AT3G09320' => 'ath', 'AT3G60800' => 'ath', 'AT4G00840' => 'ath', 'AT4G22750' => 'ath', 'AT5G04270' => 'ath', 'ATR0090G003' => 'atr', 'ATR0559G349' => 'atr', 'ATR0680G261' => 'atr', 'ATR0810G048' => 'atr', 'Atru.chr12.831' => 'acertr', 'Atru.chr5.303' => 'acertr', 'Atru.chr5.748' => 'acertr', 'Atru.chr8.1999' => 'acertr', 'Atru.chr9.1436' => 'acertr', 'AUR62004211' => 'cqu', 'AUR62004548' => 'cqu', 'AUR62013637' => 'cqu', 'AUR62022662' => 'cqu', 'AUR62025777' => 'cqu', 'AUR62042386' => 'cqu', 'BcaB01g02310' => 'bca', 'BcaB01g06062' => 'bca', 'BcaB02g08975' => 'bca', 'BcaB02g08980' => 'bca', 'BcaC01g04228' => 'bca', 'BcaC01g06830' => 'bca', 'BcaC02g10186' => 'bca', 'BcaC02g12214' => 'bca', 'BcaC04g24101' => 'bca', 'BcaC05g29520' => 'bca', 'BcaC05g29661' => 'bca', 'BcaC06g32130' => 'bca', 'BcaC06g32131' => 'bca', 'BcaC07g40601' => 'bca', 'BcaC07g42641' => 'bca', 'BcaNung01038' => 'bca', 'BcaNung01676' => 'bca', 'BcaNung02480' => 'bca', 'BcaNung07376' => 'bca', 'BolC3t16146H' => 'bol', 'BolC3t16637H' => 'bol', 'BolC4t22257H' => 'bol', 'BolC4t24728H' => 'bol', 'BolC5t34517H' => 'bol', 'BolC7t45703H' => 'bol', 'BolC8t51166H' => 'bol', 'BolC9t53038H' => 'bol', 'BolC9t60000H' => 'bol', 'BraA01t01345Z' => 'bra', 'BraA01t01346Z' => 'bra', 'BraA01t01348Z' => 'bra', 'BraA03t12347Z' => 'bra', 'BraA03t12775Z' => 'bra', 'BraA03t14439Z' => 'bra', 'BraA04t15860Z' => 'bra', 'BraA05t19511Z' => 'bra', 'BraA05t22746Z' => 'bra', 'BraA09t35767Z' => 'bra', 'BraA09t40732Z' => 'bra', 'BraA10t45233Z' => 'bra', 'C03p38720' => 'bna', 'C03p43680' => 'bna', 'C04p06350' => 'bna', 'C04p31800' => 'bna', 'C05p58680' => 'bna', 'C07p52110' => 'bna', 'C08p35760' => 'bna', 'C09p01050' => 'bna', 'C09p72600' => 'bna', 'CAN.G106.2' => 'can', 'CAN.G1482.1' => 'can', 'CAN.G324.12' => 'can', 'CAN.G388.20' => 'can', 'CAN.G412.7' => 'can', 'CAN.G694.32' => 'can', 'CAN.G92.12' => 'can', 'CANSAT11G2353' => 'cansat', 'CANSAT21G1398' => 'cansat', 'CANSAT56G2456' => 'cansat', 'CANSAT56G3031' => 'cansat', 'CANSAT56G4539' => 'cansat', 'CARHR083680' => 'chi', 'CARHR171190' => 'chi', 'CARHR209010' => 'chi', 'CARHR229680' => 'chi', 'CARHR249490' => 'chi', 'Carub.0003s0844' => 'cru', 'Carub.0005s2755' => 'cru', 'Carub.0006s0322' => 'cru', 'Carub.0006s3586' => 'cru', 'Carub.0007s1855' => 'cru', 'Ca_07808_v3' => 'car', 'Ca_09535_v3' => 'car', 'Ca_10548_v3' => 'car', 'Ca_19913_v3' => 'car', 'Ca_19916_v3' => 'car', 'Ca_19975_v3' => 'car', 'CBR_g22876' => 'cbr', 'CBR_g22879' => 'cbr', 'CBR_g38491' => 'cbr', 'CBR_g54185' => 'cbr', 'CBR_g54190' => 'cbr', 'Cc02_g11020' => 'ccan', 'Cc02_g23920' => 'ccan', 'Cc02_g39860' => 'ccan', 'Cc02_g39870' => 'ccan', 'Cc03_g06760' => 'ccan', 'Cc06_g02450' => 'ccan', 'Cc09_g09450' => 'ccan', 'CDE02G1959' => 'cde', 'CDE04G0600' => 'cde', 'CDE07G1996' => 'cde', 'CDE07G2078' => 'cde', 'CDE11G0611' => 'cde', 'Cfa001683' => 'cfa', 'Cfa001734' => 'cfa', 'Cfa001737' => 'cfa', 'Cfa003751' => 'cfa', 'Cfa012019' => 'cfa', 'Cfa017353' => 'cfa', 'Cfa017732' => 'cfa', 'Cfa022464' => 'cfa', 'Ciclev10012400m.g' => 'ccl', 'Ciclev10021242m.g' => 'ccl', 'Ciclev10021302m.g' => 'ccl', 'Ciclev10021463m.g' => 'ccl', 'Ciclev10032359m.g' => 'ccl', 'CiPaw.01G081000' => 'cil', 'CiPaw.01G262500' => 'cil', 'CiPaw.01G269800' => 'cil', 'CiPaw.02G168400' => 'cil', 'CiPaw.05G119500' => 'cil', 'CiPaw.11G147300' => 'cil', 'ClCG01G003630' => 'cla', 'ClCG05G000510' => 'cla', 'ClCG05G002300' => 'cla', 'ClCG08G007650' => 'cla', 'ClCG10G021250' => 'cla', 'COL.COLO4_06218' => 'col', 'COL.COLO4_12538' => 'col', 'COL.COLO4_14775' => 'col', 'COL.COLO4_23875' => 'col', 'Cpa.g.sc141.16' => 'cpa', 'Cpa.g.sc169.16' => 'cpa', 'Cpa.g.sc244.4' => 'cpa', 'Cpa.g.sc244.5' => 'cpa', 'Cpa.g.sc29.87' => 'cpa', 'Cpa.g.sc53.115' => 'cpa', 'Cre03.g207502' => 'cre', 'Cre06.g277000' => 'cre', 'Cre09.g394050' => 'cre', 'CsaV3_3G007680' => 'csa', 'CsaV3_3G009710' => 'csa', 'CsaV3_3G034790' => 'csa', 'CsaV3_5G003750' => 'csa', 'CsaV3_6G036620' => 'csa', 'CSS0002288' => 'camsi', 'CSS0011250' => 'camsi', 'CSS0021619' => 'camsi', 'CSS0046701' => 'camsi', 'DCAR_006420' => 'dca', 'DCAR_006865' => 'dca', 'DCAR_008558' => 'dca', 'DCAR_028754' => 'dca', 'DCAR_028755' => 'dca', 'Dinv31218' => 'din', 'Dinv32371' => 'din', 'Dinv34250' => 'din', 'Dinv37156' => 'din', 'Dinv43704' => 'din', 'Duzib093G1811' => 'dzi', 'Duzib106G1622' => 'dzi', 'Duzib114G0504' => 'dzi', 'Duzib128G0338' => 'dzi', 'Duzib128G1577' => 'dzi', 'Duzib133G0104' => 'dzi', 'Duzib133G1080' => 'dzi', 'Duzib138G0324' => 'dzi', 'Duzib138G0394' => 'dzi', 'Duzib205G0122' => 'dzi', 'Duzib268G1020' => 'dzi', 'Duzib268G1359' => 'dzi', 'ECA232G3929' => 'eca', 'ECA236G2210' => 'eca', 'ECA236G2287' => 'eca', 'ECA240G4568' => 'eca', 'ECA247G0894' => 'eca', 'EL10Ac1g00200' => 'bvu', 'EL10Ac1g00886' => 'bvu', 'EL10As1g23091' => 'bvu', 'EL10As1g23092' => 'bvu', 'Eucgr.A01284' => 'egr', 'Eucgr.A01285' => 'egr', 'Eucgr.D02456' => 'egr', 'Eucgr.E00018' => 'egr', 'Eucgr.E01439' => 'egr', 'Eucgr.G02859' => 'egr', 'FAN01G0168' => 'fan', 'FAN01G0453' => 'fan', 'FAN01G2761' => 'fan', 'FAN02G1239' => 'fan', 'FAN03G0645' => 'fan', 'FAN03G2707' => 'fan', 'FAN03G2978' => 'fan', 'FAN04G0227' => 'fan', 'FAN06G0091' => 'fan', 'FAN06G1418' => 'fan', 'FAN06G1512' => 'fan', 'FAN06G1986' => 'fan', 'FAN06G2905' => 'fan', 'FAN06G4325' => 'fan', 'FAN08G0033' => 'fan', 'FAN09G0642' => 'fan', 'FAN10G1763' => 'fan', 'FAN10G2026' => 'fan', 'FAN10G2513' => 'fan', 'FAN10G3402' => 'fan', 'FAN10G3564' => 'fan', 'FAN10G3987' => 'fan', 'FAN13G1490' => 'fan', 'FAN14G5857' => 'fan', 'FAN18G1188' => 'fan', 'FvH4_5g00750' => 'fve', 'FvH4_6g13410' => 'fve', 'FvH4_7g11740' => 'fve', 'FvH4_7g17410' => 'fve', 'FvH4_7g18860' => 'fve', 'Glyma.01G099100' => 'gma', 'Glyma.01G142300' => 'gma', 'Glyma.03G025500' => 'gma', 'Glyma.03G069700' => 'gma', 'Glyma.03G260000' => 'gma', 'Glyma.09G269800' => 'gma', 'Glyma.10G208700' => 'gma', 'Glyma.18G220400' => 'gma', 'Glyma.20G182000' => 'gma', 'Gohir.A01G221726' => 'ghi', 'Gohir.A07G134600' => 'ghi', 'Gohir.A07G146000' => 'ghi', 'Gohir.A08G173900' => 'ghi', 'Gohir.A09G194900' => 'ghi', 'Gohir.A10G204100' => 'ghi', 'Gohir.A11G080600' => 'ghi', 'Gohir.A11G327500' => 'ghi', 'Gohir.A12G101800' => 'ghi', 'Gohir.D01G211200' => 'ghi', 'Gohir.D07G139200' => 'ghi', 'Gohir.D07G152100' => 'ghi', 'Gohir.D08G192600' => 'ghi', 'Gohir.D09G189200' => 'ghi', 'Gohir.D10G212000' => 'ghi', 'Gohir.D11G085200' => 'ghi', 'Gohir.D11G346400' => 'ghi', 'Gohir.D12G104800' => 'ghi', 'Gorai.001G151300' => 'gra', 'Gorai.001G174100' => 'gra', 'Gorai.002G257000' => 'gra', 'Gorai.004G202600' => 'gra', 'Gorai.007G090900' => 'gra', 'Gorai.007G376700' => 'gra', 'Gorai.008G114100' => 'gra', 'Gorai.011G237900' => 'gra', 'GSVIVG01005450001' => 'vvi', 'GSVIVG01016232001' => 'vvi', 'GSVIVG01026157001' => 'vvi', 'GSVIVG01027419001' => 'vvi', 'GSVIVG01027631001' => 'vvi', 'GSVIVG01034143001' => 'vvi', 'HanXRQChr03g0093921' => 'han', 'HanXRQChr04g0120001' => 'han', 'HanXRQChr04g0122561' => 'han', 'HanXRQChr09g0246851' => 'han', 'HanXRQChr10g0293311' => 'han', 'HanXRQChr13g0425231' => 'han', 'HanXRQChr16g0532571' => 'han', 'Haze_09050' => 'cav', 'Haze_15715' => 'cav', 'Haze_15716' => 'cav', 'Haze_16803' => 'cav', 'Haze_16850' => 'cav', 'Hma1.2p1_0301F.1_g118655' => 'hma', 'Hma1.2p1_0309F.1_g120590' => 'hma', 'Hma1.2p1_0936F.1_g238900' => 'hma', 'Hma1.2p1_3552F.1_g336740' => 'hma', 'HPP92_003520' => 'vpl', 'HPP92_006628' => 'vpl', 'HPP92_006645' => 'vpl', 'HPP92_014669' => 'vpl', 'HPP92_015077' => 'vpl', 'Hund16742' => 'sun', 'Hund17022' => 'sun', 'Lalb_Chr02g0152131' => 'lal', 'Lalb_Chr05g0225371' => 'lal', 'Lalb_Chr07g0189841' => 'lal', 'Lalb_Chr07g0192961' => 'lal', 'Lalb_Chr12g0208221' => 'lal', 'Lalb_Chr13g0291211' => 'lal', 'Lalb_Chr13g0291781' => 'lal', 'Lalb_Chr18g0044651' => 'lal', 'Lalb_Chr21g0313731' => 'lal', 'Lj1g0022533' => 'lja', 'Lj2A18T50' => 'lonja', 'Lj2A92G93' => 'lonja', 'Lj3A965T73' => 'lonja', 'Lj3g0000673' => 'lja', 'Lj3g0002666' => 'lja', 'Lj4g0016985' => 'lja', 'Lj5g0003625' => 'lja', 'Lj7A529G36' => 'lonja', 'Lj9A569T49' => 'lonja', 'Lj9A604T63' => 'lonja', 'Lsat_1_v5_gn_3_132060' => 'lsa', 'Lsat_1_v5_gn_4_68941' => 'lsa', 'Lsat_1_v5_gn_5_95580' => 'lsa', 'Lsat_1_v5_gn_7_161' => 'lsa', 'Lsat_1_v5_gn_7_7041' => 'lsa', 'Lsat_1_v5_gn_9_33481' => 'lsa', 'Lsat_1_v5_gn_9_68260' => 'lsa', 'Manes.01G073100' => 'mes', 'Manes.01G266300' => 'mes', 'Manes.02G033300' => 'mes', 'Manes.05G017900' => 'mes', 'Manes.05G046100' => 'mes', 'Manes.08G080900' => 'mes', 'Manes.10G049400' => 'mes', 'Mapoly0009s0186' => 'mpo', 'Mapoly0036s0118' => 'mpo', 'Mapoly0101s0046' => 'mpo', 'MBI04_g30218_MAGBIO' => 'mbi', 'MBI04_g35564_MAGBIO' => 'mbi', 'MBI12_g34011_MAGBIO' => 'mbi', 'MBI14_g04655_MAGBIO' => 'mbi', 'MCO07G653' => 'mco', 'MCO10G173' => 'mco', 'MD01G1087100' => 'mdo', 'MD01G1104200' => 'mdo', 'MD02G1205100' => 'mdo', 'MD04G1079200' => 'mdo', 'MD04G1131400' => 'mdo', 'MD07G1121600' => 'mdo', 'MD07G1157300' => 'mdo', 'MD07G1171000' => 'mdo', 'MD12G1144500' => 'mdo', 'Medtr1g094610' => 'mtr', 'Medtr4g021795' => 'mtr', 'Medtr4g023760' => 'mtr', 'Medtr7g118050' => 'mtr', 'MELO3C005582.2' => 'cme', 'MELO3C005989.2' => 'cme', 'MELO3C006192.2' => 'cme', 'MELO3C009248.2' => 'cme', 'MELO3C019817.2' => 'cme', 'Migut.B01625' => 'egut', 'Migut.B01915' => 'egut', 'Migut.F01721' => 'egut', 'Migut.J00314' => 'egut', 'MSTRG.20742' => 'ama', 'MSTRG.8134' => 'ama', 'Nitab4.5_0000096g0010' => 'nta', 'Nitab4.5_0000202g0030' => 'nta', 'Nitab4.5_0000216g0370' => 'nta', 'Nitab4.5_0000457g0230' => 'nta', 'Nitab4.5_0001702g0170' => 'nta', 'Nitab4.5_0003607g0010' => 'nta', 'Nitab4.5_0004917g0020' => 'nta', 'Nitab4.5_0007059g0010' => 'nta', 'Nitab4.5_0007184g0010' => 'nta', 'Nitab4.5_0007346g0020' => 'nta', 'Nn1g00410' => 'nnu', 'Nn1g01252' => 'nnu', 'Nn2g11168' => 'nnu', 'Nn2g13403' => 'nnu', 'Nn2g13760' => 'nnu', 'Nn4g26380' => 'nnu', 'Oeu000806.2' => 'oeu', 'Oeu005788.1' => 'oeu', 'Oeu006900.3' => 'oeu', 'Oeu007797.1' => 'oeu', 'Oeu011932.1' => 'oeu', 'Oeu022739.1' => 'oeu', 'Oeu037918.1' => 'oeu', 'Oeu055490.2' => 'oeu', 'Os01g0844400' => 'osa', 'Os02g0819100' => 'osa', 'Os03g0804300' => 'osa', 'Os05g0458000' => 'osa', 'Os07g0467800' => 'osa', 'Os12g0602200' => 'osa', 'Peaxi162Scf00013g03444' => 'pax', 'Peaxi162Scf00094g01120' => 'pax', 'Peaxi162Scf00191g01211' => 'pax', 'Peaxi162Scf00238g01110' => 'pax', 'Peaxi162Scf00330g00719' => 'pax', 'Peaxi162Scf00627g00018' => 'pax', 'PGR031G2686' => 'pgr', 'PGR042G0809' => 'pgr', 'PGR142G0193' => 'pgr', 'PGSC0003DMG400011066' => 'stu', 'PGSC0003DMG400012041' => 'stu', 'PGSC0003DMG400013678' => 'stu', 'PGSC0003DMG400023477' => 'stu', 'PGSC0003DMG400025956' => 'stu', 'PGSC0003DMG401019151' => 'stu', 'Phvul.006G116400' => 'pvu', 'Phvul.007G097300' => 'pvu', 'Phvul.010G015000' => 'pvu', 'Phvul.010G083900' => 'pvu', 'Potri.001G117100' => 'ptr', 'Potri.002G147300' => 'ptr', 'Potri.003G115600' => 'ptr', 'Potri.006G087400' => 'ptr', 'Potri.010G226100' => 'ptr', 'Potri.014G069200' => 'ptr', 'Potri.014G104000' => 'ptr', 'Potri.016G100200' => 'ptr', 'Pp3c10_20450' => 'ppa', 'Pp3c1_42400' => 'ppa', 'Pp3c3_24390' => 'ppa', 'Pp3c3_2860' => 'ppa', 'PRCOL_00003193' => 'pco', 'Prupe.2G144500' => 'ppe', 'Prupe.2G195700' => 'ppe', 'Prupe.2G209800' => 'ppe', 'Prupe.5G080000' => 'ppe', 'Prupe.6G257900' => 'ppe', 'Psat3g001160' => 'psa', 'Psat6g181880' => 'psa', 'Psat7g233720' => 'psa', 'PSO063G7587' => 'pso', 'PSO339G2145' => 'pso', 'PSO339G3369' => 'pso', 'PSO478G2747' => 'pso', 'PSO513G0140' => 'pso', 'PSO782G1614' => 'pso', 'PSO782G4889' => 'pso', 'PSO782G5485' => 'pso', 'PSO801G0241' => 'pso', 'QL07p048854' => 'qlo', 'QL08p046745' => 'qlo', 'QL08p052606' => 'qlo', 'QL08p053414' => 'qlo', 'QL08p054868' => 'qlo', 'RcHm_v2.0_Chr1g0350251' => 'rch', 'RcHm_v2.0_Chr1g0360851' => 'rch', 'RcHm_v2.0_Chr1g0362791' => 'rch', 'RcHm_v2.0_Chr3g0466281' => 'rch', 'RcHm_v2.0_Chr7g0201481' => 'rch', 'Rhsim01G0148600' => 'rsi', 'Rhsim05G0194400' => 'rsi', 'Rhsim07G0000700' => 'rsi', 'Rhsim07G0000800' => 'rsi', 'Rhsim07G0027900' => 'rsi', 'Rhsim09G0149500' => 'rsi', 'RhsimUnG0186900' => 'rsi', 'Sabra01G0089900' => 'sbr', 'Sabra02G0114700' => 'sbr', 'Sabra02G0116300' => 'sbr', 'Sabra03G0080100' => 'sbr', 'Sabra08G0024300' => 'sbr', 'Sabra10G0174300' => 'sbr', 'Sabra14G0048900' => 'sbr', 'Sabra14G0076500' => 'sbr', 'SalBow5G2513' => 'sbo', 'Sc01g0002300' => 'sci', 'Sc01g0004450' => 'sci', 'Sc06g0001680' => 'sci', 'Sc23g0003580' => 'sci', 'Sed0000913' => 'sed', 'Sed0001655' => 'sed', 'Sed0007745' => 'sed', 'Sed0010951' => 'sed', 'Sed0017599' => 'sed', 'Sed0021405' => 'sed', 'Sed0022810' => 'sed', 'SEGI_07099' => 'sgi', 'SEGI_11931' => 'sgi', 'SEGI_13187' => 'sgi', 'SEGI_29958' => 'sgi', 'SEGI_36351' => 'sgi', 'SGA_v2.0_scaffold126G33770' => 'sas', 'SGA_v2.0_scaffold153G37003' => 'sas', 'SGA_v2.0_scaffold2G01359' => 'sas', 'SGA_v2.0_scaffold5G03064' => 'sas', 'SGA_v2.0_scaffold95G28903' => 'sas', 'SHI12701' => 'shi', 'SHI26410' => 'shi', 'SHI38997' => 'shi', 'SHI53759' => 'shi', 'SHI53886' => 'shi', 'SHI54714' => 'shi', 'SMO011G0041' => 'smo', 'SMO146G0251' => 'smo', 'SMO160G0004' => 'smo', 'SMO174G0057' => 'smo', 'SMO244G0089' => 'smo', 'SMO296G0011' => 'smo', 'Solyc01g091280.3' => 'sly', 'Solyc05g047610.3' => 'sly', 'Solyc05g047640.3' => 'sly', 'Solyc05g055630.3' => 'sly', 'Solyc10g018160.2' => 'sly', 'Solyc10g084820.2' => 'sly', 'Solyc10g086565.2' => 'sly', 'Sopen01g037030' => 'spe', 'Sopen05g027920' => 'spe', 'Sopen05g034070' => 'spe', 'Sopen10g007260' => 'spe', 'Sopen10g034260' => 'spe', 'Sopen10g035950' => 'spe', 'Sp3g07710' => 'spa', 'Sp4g27420' => 'spa', 'Sp5g02450' => 'spa', 'Sp6g01280' => 'spa', 'Sp6g38480' => 'spa', 'Sp7g20780' => 'spa', 'TAR374G1413' => 'tar', 'TAR623G1777' => 'tar', 'TAR629G2370' => 'tar', 'TAR633G1759' => 'tar', 'TAR636G3387' => 'tar', 'THA.LOC104802447' => 'tha', 'THA.LOC104813916' => 'tha', 'THA.LOC104816423' => 'tha', 'THA.LOC104817246' => 'tha', 'THA.LOC104825895' => 'tha', 'Thecc.01G335200' => 'tca', 'Thecc.01G377400' => 'tca', 'Thecc.03G262200' => 'tca', 'Thecc.05G036800' => 'tca', 'Thecc.10G080500' => 'tca', 'Thecc.10G080800' => 'tca', 'Thhalv10001560m.g' => 'esa', 'Thhalv10006120m.g' => 'esa', 'Thhalv10014375m.g' => 'esa', 'Thhalv10021264m.g' => 'esa', 'Thhalv10028856m.g' => 'esa', 'TPR.G1914' => 'tpr', 'TPR.G4757' => 'tpr', 'TPR.G5595' => 'tpr', 'TWI14G0952' => 'twi', 'TWI14G1307' => 'twi', 'TWI38G2143' => 'twi', 'TWI59G0826' => 'twi', 'TWI77G0527' => 'twi', 'TWI81G0150' => 'twi', 'unitig_21.g21018' => 'ugi', 'unitig_26.g9725' => 'ugi', 'unitig_744.g24653' => 'ugi', 'unitig_749.g13778' => 'ugi', 'unitig_899.g15035' => 'ugi', 'vmacro04296' => 'vma', 'vmacro04852' => 'vma', 'vmacro13404' => 'vma', 'vmacro20169' => 'vma', 'vmacro21014' => 'vma', 'VMungo0331G0237' => 'vmu', 'VMungo0331G0706' => 'vmu', 'VMungo0331G1361' => 'vmu', 'VMungo0331G1489' => 'vmu', 'VMungo0540G1037' => 'vmu', 'VMungo0720G2487' => 'vmu', 'VMungo0720G2721' => 'vmu', 'Zm00001eb086860' => 'zma', 'Zm00001eb104760' => 'zma', 'Zm00001eb148220' => 'zma', 'Zm00001eb259030' => 'zma', 'Zm00001eb289590' => 'zma', 'Zm00001eb420150' => 'zma' ), 'gf_id' => 'HOM05D000968', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000968' ), 'data_identifier' => 'HOM05D000968', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000968', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p31690' => 'bna', 'A03p36040' => 'bna', 'A03p53730' => 'bna', 'A04p01410' => 'bna', 'A05p05420' => 'bna', 'A05p39630' => 'bna', 'A05p39640' => 'bna', 'A09p00970' => 'bna', 'A09p53060' => 'bna', 'A10p31890' => 'bna', 'Aa31LG10G15040' => 'aar', 'Aa31LG1G21090' => 'aar', 'Aa31LG1G26900' => 'aar', 'Aa31LG3G1820' => 'aar', 'Aa31LG5G1100' => 'aar', 'Aa31LG6G4740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2265' => 'aag', 'Actinidia07998' => 'ach', 'Actinidia11266' => 'ach', 'Actinidia12682' => 'ach', 'Actinidia26479' => 'ach', 'Actinidia31406' => 'ach', 'Actinidia32437' => 'ach', 'Actinidia38862' => 'ach', 'Ah.05g174230' => 'amhyb', 'Ah.05g179070' => 'amhyb', 'Ah.05g179090' => 'amhyb', 'Ah.12g059950' => 'amhyb', 'AL3G20480' => 'aly', 'AL4G44520' => 'aly', 'AL5G43110' => 'aly', 'AL6G13890' => 'aly', 'AL6G52620' => 'aly', 'AL7G30830' => 'aly', 'Aqoxy1G00899' => 'aox', 'Aqoxy5G04333' => 'aox', 'Aqoxy7G00641' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3IZ0NN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4EF6AW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W9P8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79GA3M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C43NQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFCU6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G95YVJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCHK29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LU1UG8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX91RN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGB4B1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8DA0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9H7JI' => 'arhy', 'AT3G09320' => 'ath', 'AT3G60800' => 'ath', 'AT4G00840' => 'ath', 'AT4G22750' => 'ath', 'AT5G04270' => 'ath', 'ATR0090G003' => 'atr', 'ATR0559G349' => 'atr', 'ATR0680G261' => 'atr', 'ATR0810G048' => 'atr', 'Atru.chr12.831' => 'acertr', 'Atru.chr5.303' => 'acertr', 'Atru.chr5.748' => 'acertr', 'Atru.chr8.1999' => 'acertr', 'Atru.chr9.1436' => 'acertr', 'AUR62004211' => 'cqu', 'AUR62004548' => 'cqu', 'AUR62013637' => 'cqu', 'AUR62022662' => 'cqu', 'AUR62025777' => 'cqu', 'AUR62042386' => 'cqu', 'BcaB01g02310' => 'bca', 'BcaB01g06062' => 'bca', 'BcaB02g08975' => 'bca', 'BcaB02g08980' => 'bca', 'BcaC01g04228' => 'bca', 'BcaC01g06830' => 'bca', 'BcaC02g10186' => 'bca', 'BcaC02g12214' => 'bca', 'BcaC04g24101' => 'bca', 'BcaC05g29520' => 'bca', 'BcaC05g29661' => 'bca', 'BcaC06g32130' => 'bca', 'BcaC06g32131' => 'bca', 'BcaC07g40601' => 'bca', 'BcaC07g42641' => 'bca', 'BcaNung01038' => 'bca', 'BcaNung01676' => 'bca', 'BcaNung02480' => 'bca', 'BcaNung07376' => 'bca', 'BolC3t16146H' => 'bol', 'BolC3t16637H' => 'bol', 'BolC4t22257H' => 'bol', 'BolC4t24728H' => 'bol', 'BolC5t34517H' => 'bol', 'BolC7t45703H' => 'bol', 'BolC8t51166H' => 'bol', 'BolC9t53038H' => 'bol', 'BolC9t60000H' => 'bol', 'BraA01t01345Z' => 'bra', 'BraA01t01346Z' => 'bra', 'BraA01t01348Z' => 'bra', 'BraA03t12347Z' => 'bra', 'BraA03t12775Z' => 'bra', 'BraA03t14439Z' => 'bra', 'BraA04t15860Z' => 'bra', 'BraA05t19511Z' => 'bra', 'BraA05t22746Z' => 'bra', 'BraA09t35767Z' => 'bra', 'BraA09t40732Z' => 'bra', 'BraA10t45233Z' => 'bra', 'C03p38720' => 'bna', 'C03p43680' => 'bna', 'C04p06350' => 'bna', 'C04p31800' => 'bna', 'C05p58680' => 'bna', 'C07p52110' => 'bna', 'C08p35760' => 'bna', 'C09p01050' => 'bna', 'C09p72600' => 'bna', 'CAN.G106.2' => 'can', 'CAN.G1482.1' => 'can', 'CAN.G324.12' => 'can', 'CAN.G388.20' => 'can', 'CAN.G412.7' => 'can', 'CAN.G694.32' => 'can', 'CAN.G92.12' => 'can', 'CANSAT11G2353' => 'cansat', 'CANSAT21G1398' => 'cansat', 'CANSAT56G2456' => 'cansat', 'CANSAT56G3031' => 'cansat', 'CANSAT56G4539' => 'cansat', 'CARHR083680' => 'chi', 'CARHR171190' => 'chi', 'CARHR209010' => 'chi', 'CARHR229680' => 'chi', 'CARHR249490' => 'chi', 'Carub.0003s0844' => 'cru', 'Carub.0005s2755' => 'cru', 'Carub.0006s0322' => 'cru', 'Carub.0006s3586' => 'cru', 'Carub.0007s1855' => 'cru', 'Ca_07808_v3' => 'car', 'Ca_09535_v3' => 'car', 'Ca_10548_v3' => 'car', 'Ca_19913_v3' => 'car', 'Ca_19916_v3' => 'car', 'Ca_19975_v3' => 'car', 'CBR_g22876' => 'cbr', 'CBR_g22879' => 'cbr', 'CBR_g38491' => 'cbr', 'CBR_g54185' => 'cbr', 'CBR_g54190' => 'cbr', 'Cc02_g11020' => 'ccan', 'Cc02_g23920' => 'ccan', 'Cc02_g39860' => 'ccan', 'Cc02_g39870' => 'ccan', 'Cc03_g06760' => 'ccan', 'Cc06_g02450' => 'ccan', 'Cc09_g09450' => 'ccan', 'CDE02G1959' => 'cde', 'CDE04G0600' => 'cde', 'CDE07G1996' => 'cde', 'CDE07G2078' => 'cde', 'CDE11G0611' => 'cde', 'Cfa001683' => 'cfa', 'Cfa001734' => 'cfa', 'Cfa001737' => 'cfa', 'Cfa003751' => 'cfa', 'Cfa012019' => 'cfa', 'Cfa017353' => 'cfa', 'Cfa017732' => 'cfa', 'Cfa022464' => 'cfa', 'Ciclev10012400m.g' => 'ccl', 'Ciclev10021242m.g' => 'ccl', 'Ciclev10021302m.g' => 'ccl', 'Ciclev10021463m.g' => 'ccl', 'Ciclev10032359m.g' => 'ccl', 'CiPaw.01G081000' => 'cil', 'CiPaw.01G262500' => 'cil', 'CiPaw.01G269800' => 'cil', 'CiPaw.02G168400' => 'cil', 'CiPaw.05G119500' => 'cil', 'CiPaw.11G147300' => 'cil', 'ClCG01G003630' => 'cla', 'ClCG05G000510' => 'cla', 'ClCG05G002300' => 'cla', 'ClCG08G007650' => 'cla', 'ClCG10G021250' => 'cla', 'COL.COLO4_06218' => 'col', 'COL.COLO4_12538' => 'col', 'COL.COLO4_14775' => 'col', 'COL.COLO4_23875' => 'col', 'Cpa.g.sc141.16' => 'cpa', 'Cpa.g.sc169.16' => 'cpa', 'Cpa.g.sc244.4' => 'cpa', 'Cpa.g.sc244.5' => 'cpa', 'Cpa.g.sc29.87' => 'cpa', 'Cpa.g.sc53.115' => 'cpa', 'Cre03.g207502' => 'cre', 'Cre06.g277000' => 'cre', 'Cre09.g394050' => 'cre', 'CsaV3_3G007680' => 'csa', 'CsaV3_3G009710' => 'csa', 'CsaV3_3G034790' => 'csa', 'CsaV3_5G003750' => 'csa', 'CsaV3_6G036620' => 'csa', 'CSS0002288' => 'camsi', 'CSS0011250' => 'camsi', 'CSS0021619' => 'camsi', 'CSS0046701' => 'camsi', 'DCAR_006420' => 'dca', 'DCAR_006865' => 'dca', 'DCAR_008558' => 'dca', 'DCAR_028754' => 'dca', 'DCAR_028755' => 'dca', 'Dinv31218' => 'din', 'Dinv32371' => 'din', 'Dinv34250' => 'din', 'Dinv37156' => 'din', 'Dinv43704' => 'din', 'Duzib093G1811' => 'dzi', 'Duzib106G1622' => 'dzi', 'Duzib114G0504' => 'dzi', 'Duzib128G0338' => 'dzi', 'Duzib128G1577' => 'dzi', 'Duzib133G0104' => 'dzi', 'Duzib133G1080' => 'dzi', 'Duzib138G0324' => 'dzi', 'Duzib138G0394' => 'dzi', 'Duzib205G0122' => 'dzi', 'Duzib268G1020' => 'dzi', 'Duzib268G1359' => 'dzi', 'ECA232G3929' => 'eca', 'ECA236G2210' => 'eca', 'ECA236G2287' => 'eca', 'ECA240G4568' => 'eca', 'ECA247G0894' => 'eca', 'EL10Ac1g00200' => 'bvu', 'EL10Ac1g00886' => 'bvu', 'EL10As1g23091' => 'bvu', 'EL10As1g23092' => 'bvu', 'Eucgr.A01284' => 'egr', 'Eucgr.A01285' => 'egr', 'Eucgr.D02456' => 'egr', 'Eucgr.E00018' => 'egr', 'Eucgr.E01439' => 'egr', 'Eucgr.G02859' => 'egr', 'FAN01G0168' => 'fan', 'FAN01G0453' => 'fan', 'FAN01G2761' => 'fan', 'FAN02G1239' => 'fan', 'FAN03G0645' => 'fan', 'FAN03G2707' => 'fan', 'FAN03G2978' => 'fan', 'FAN04G0227' => 'fan', 'FAN06G0091' => 'fan', 'FAN06G1418' => 'fan', 'FAN06G1512' => 'fan', 'FAN06G1986' => 'fan', 'FAN06G2905' => 'fan', 'FAN06G4325' => 'fan', 'FAN08G0033' => 'fan', 'FAN09G0642' => 'fan', 'FAN10G1763' => 'fan', 'FAN10G2026' => 'fan', 'FAN10G2513' => 'fan', 'FAN10G3402' => 'fan', 'FAN10G3564' => 'fan', 'FAN10G3987' => 'fan', 'FAN13G1490' => 'fan', 'FAN14G5857' => 'fan', 'FAN18G1188' => 'fan', 'FvH4_5g00750' => 'fve', 'FvH4_6g13410' => 'fve', 'FvH4_7g11740' => 'fve', 'FvH4_7g17410' => 'fve', 'FvH4_7g18860' => 'fve', 'Glyma.01G099100' => 'gma', 'Glyma.01G142300' => 'gma', 'Glyma.03G025500' => 'gma', 'Glyma.03G069700' => 'gma', 'Glyma.03G260000' => 'gma', 'Glyma.09G269800' => 'gma', 'Glyma.10G208700' => 'gma', 'Glyma.18G220400' => 'gma', 'Glyma.20G182000' => 'gma', 'Gohir.A01G221726' => 'ghi', 'Gohir.A07G134600' => 'ghi', 'Gohir.A07G146000' => 'ghi', 'Gohir.A08G173900' => 'ghi', 'Gohir.A09G194900' => 'ghi', 'Gohir.A10G204100' => 'ghi', 'Gohir.A11G080600' => 'ghi', 'Gohir.A11G327500' => 'ghi', 'Gohir.A12G101800' => 'ghi', 'Gohir.D01G211200' => 'ghi', 'Gohir.D07G139200' => 'ghi', 'Gohir.D07G152100' => 'ghi', 'Gohir.D08G192600' => 'ghi', 'Gohir.D09G189200' => 'ghi', 'Gohir.D10G212000' => 'ghi', 'Gohir.D11G085200' => 'ghi', 'Gohir.D11G346400' => 'ghi', 'Gohir.D12G104800' => 'ghi', 'Gorai.001G151300' => 'gra', 'Gorai.001G174100' => 'gra', 'Gorai.002G257000' => 'gra', 'Gorai.004G202600' => 'gra', 'Gorai.007G090900' => 'gra', 'Gorai.007G376700' => 'gra', 'Gorai.008G114100' => 'gra', 'Gorai.011G237900' => 'gra', 'GSVIVG01005450001' => 'vvi', 'GSVIVG01016232001' => 'vvi', 'GSVIVG01026157001' => 'vvi', 'GSVIVG01027419001' => 'vvi', 'GSVIVG01027631001' => 'vvi', 'GSVIVG01034143001' => 'vvi', 'HanXRQChr03g0093921' => 'han', 'HanXRQChr04g0120001' => 'han', 'HanXRQChr04g0122561' => 'han', 'HanXRQChr09g0246851' => 'han', 'HanXRQChr10g0293311' => 'han', 'HanXRQChr13g0425231' => 'han', 'HanXRQChr16g0532571' => 'han', 'Haze_09050' => 'cav', 'Haze_15715' => 'cav', 'Haze_15716' => 'cav', 'Haze_16803' => 'cav', 'Haze_16850' => 'cav', 'Hma1.2p1_0301F.1_g118655' => 'hma', 'Hma1.2p1_0309F.1_g120590' => 'hma', 'Hma1.2p1_0936F.1_g238900' => 'hma', 'Hma1.2p1_3552F.1_g336740' => 'hma', 'HPP92_003520' => 'vpl', 'HPP92_006628' => 'vpl', 'HPP92_006645' => 'vpl', 'HPP92_014669' => 'vpl', 'HPP92_015077' => 'vpl', 'Hund16742' => 'sun', 'Hund17022' => 'sun', 'Lalb_Chr02g0152131' => 'lal', 'Lalb_Chr05g0225371' => 'lal', 'Lalb_Chr07g0189841' => 'lal', 'Lalb_Chr07g0192961' => 'lal', 'Lalb_Chr12g0208221' => 'lal', 'Lalb_Chr13g0291211' => 'lal', 'Lalb_Chr13g0291781' => 'lal', 'Lalb_Chr18g0044651' => 'lal', 'Lalb_Chr21g0313731' => 'lal', 'Lj1g0022533' => 'lja', 'Lj2A18T50' => 'lonja', 'Lj2A92G93' => 'lonja', 'Lj3A965T73' => 'lonja', 'Lj3g0000673' => 'lja', 'Lj3g0002666' => 'lja', 'Lj4g0016985' => 'lja', 'Lj5g0003625' => 'lja', 'Lj7A529G36' => 'lonja', 'Lj9A569T49' => 'lonja', 'Lj9A604T63' => 'lonja', 'Lsat_1_v5_gn_3_132060' => 'lsa', 'Lsat_1_v5_gn_4_68941' => 'lsa', 'Lsat_1_v5_gn_5_95580' => 'lsa', 'Lsat_1_v5_gn_7_161' => 'lsa', 'Lsat_1_v5_gn_7_7041' => 'lsa', 'Lsat_1_v5_gn_9_33481' => 'lsa', 'Lsat_1_v5_gn_9_68260' => 'lsa', 'Manes.01G073100' => 'mes', 'Manes.01G266300' => 'mes', 'Manes.02G033300' => 'mes', 'Manes.05G017900' => 'mes', 'Manes.05G046100' => 'mes', 'Manes.08G080900' => 'mes', 'Manes.10G049400' => 'mes', 'Mapoly0009s0186' => 'mpo', 'Mapoly0036s0118' => 'mpo', 'Mapoly0101s0046' => 'mpo', 'MBI04_g30218_MAGBIO' => 'mbi', 'MBI04_g35564_MAGBIO' => 'mbi', 'MBI12_g34011_MAGBIO' => 'mbi', 'MBI14_g04655_MAGBIO' => 'mbi', 'MCO07G653' => 'mco', 'MCO10G173' => 'mco', 'MD01G1087100' => 'mdo', 'MD01G1104200' => 'mdo', 'MD02G1205100' => 'mdo', 'MD04G1079200' => 'mdo', 'MD04G1131400' => 'mdo', 'MD07G1121600' => 'mdo', 'MD07G1157300' => 'mdo', 'MD07G1171000' => 'mdo', 'MD12G1144500' => 'mdo', 'Medtr1g094610' => 'mtr', 'Medtr4g021795' => 'mtr', 'Medtr4g023760' => 'mtr', 'Medtr7g118050' => 'mtr', 'MELO3C005582.2' => 'cme', 'MELO3C005989.2' => 'cme', 'MELO3C006192.2' => 'cme', 'MELO3C009248.2' => 'cme', 'MELO3C019817.2' => 'cme', 'Migut.B01625' => 'egut', 'Migut.B01915' => 'egut', 'Migut.F01721' => 'egut', 'Migut.J00314' => 'egut', 'MSTRG.20742' => 'ama', 'MSTRG.8134' => 'ama', 'Nitab4.5_0000096g0010' => 'nta', 'Nitab4.5_0000202g0030' => 'nta', 'Nitab4.5_0000216g0370' => 'nta', 'Nitab4.5_0000457g0230' => 'nta', 'Nitab4.5_0001702g0170' => 'nta', 'Nitab4.5_0003607g0010' => 'nta', 'Nitab4.5_0004917g0020' => 'nta', 'Nitab4.5_0007059g0010' => 'nta', 'Nitab4.5_0007184g0010' => 'nta', 'Nitab4.5_0007346g0020' => 'nta', 'Nn1g00410' => 'nnu', 'Nn1g01252' => 'nnu', 'Nn2g11168' => 'nnu', 'Nn2g13403' => 'nnu', 'Nn2g13760' => 'nnu', 'Nn4g26380' => 'nnu', 'Oeu000806.2' => 'oeu', 'Oeu005788.1' => 'oeu', 'Oeu006900.3' => 'oeu', 'Oeu007797.1' => 'oeu', 'Oeu011932.1' => 'oeu', 'Oeu022739.1' => 'oeu', 'Oeu037918.1' => 'oeu', 'Oeu055490.2' => 'oeu', 'Os01g0844400' => 'osa', 'Os02g0819100' => 'osa', 'Os03g0804300' => 'osa', 'Os05g0458000' => 'osa', 'Os07g0467800' => 'osa', 'Os12g0602200' => 'osa', 'Peaxi162Scf00013g03444' => 'pax', 'Peaxi162Scf00094g01120' => 'pax', 'Peaxi162Scf00191g01211' => 'pax', 'Peaxi162Scf00238g01110' => 'pax', 'Peaxi162Scf00330g00719' => 'pax', 'Peaxi162Scf00627g00018' => 'pax', 'PGR031G2686' => 'pgr', 'PGR042G0809' => 'pgr', 'PGR142G0193' => 'pgr', 'PGSC0003DMG400011066' => 'stu', 'PGSC0003DMG400012041' => 'stu', 'PGSC0003DMG400013678' => 'stu', 'PGSC0003DMG400023477' => 'stu', 'PGSC0003DMG400025956' => 'stu', 'PGSC0003DMG401019151' => 'stu', 'Phvul.006G116400' => 'pvu', 'Phvul.007G097300' => 'pvu', 'Phvul.010G015000' => 'pvu', 'Phvul.010G083900' => 'pvu', 'Potri.001G117100' => 'ptr', 'Potri.002G147300' => 'ptr', 'Potri.003G115600' => 'ptr', 'Potri.006G087400' => 'ptr', 'Potri.010G226100' => 'ptr', 'Potri.014G069200' => 'ptr', 'Potri.014G104000' => 'ptr', 'Potri.016G100200' => 'ptr', 'Pp3c10_20450' => 'ppa', 'Pp3c1_42400' => 'ppa', 'Pp3c3_24390' => 'ppa', 'Pp3c3_2860' => 'ppa', 'PRCOL_00003193' => 'pco', 'Prupe.2G144500' => 'ppe', 'Prupe.2G195700' => 'ppe', 'Prupe.2G209800' => 'ppe', 'Prupe.5G080000' => 'ppe', 'Prupe.6G257900' => 'ppe', 'Psat3g001160' => 'psa', 'Psat6g181880' => 'psa', 'Psat7g233720' => 'psa', 'PSO063G7587' => 'pso', 'PSO339G2145' => 'pso', 'PSO339G3369' => 'pso', 'PSO478G2747' => 'pso', 'PSO513G0140' => 'pso', 'PSO782G1614' => 'pso', 'PSO782G4889' => 'pso', 'PSO782G5485' => 'pso', 'PSO801G0241' => 'pso', 'QL07p048854' => 'qlo', 'QL08p046745' => 'qlo', 'QL08p052606' => 'qlo', 'QL08p053414' => 'qlo', 'QL08p054868' => 'qlo', 'RcHm_v2.0_Chr1g0350251' => 'rch', 'RcHm_v2.0_Chr1g0360851' => 'rch', 'RcHm_v2.0_Chr1g0362791' => 'rch', 'RcHm_v2.0_Chr3g0466281' => 'rch', 'RcHm_v2.0_Chr7g0201481' => 'rch', 'Rhsim01G0148600' => 'rsi', 'Rhsim05G0194400' => 'rsi', 'Rhsim07G0000700' => 'rsi', 'Rhsim07G0000800' => 'rsi', 'Rhsim07G0027900' => 'rsi', 'Rhsim09G0149500' => 'rsi', 'RhsimUnG0186900' => 'rsi', 'Sabra01G0089900' => 'sbr', 'Sabra02G0114700' => 'sbr', 'Sabra02G0116300' => 'sbr', 'Sabra03G0080100' => 'sbr', 'Sabra08G0024300' => 'sbr', 'Sabra10G0174300' => 'sbr', 'Sabra14G0048900' => 'sbr', 'Sabra14G0076500' => 'sbr', 'SalBow5G2513' => 'sbo', 'Sc01g0002300' => 'sci', 'Sc01g0004450' => 'sci', 'Sc06g0001680' => 'sci', 'Sc23g0003580' => 'sci', 'Sed0000913' => 'sed', 'Sed0001655' => 'sed', 'Sed0007745' => 'sed', 'Sed0010951' => 'sed', 'Sed0017599' => 'sed', 'Sed0021405' => 'sed', 'Sed0022810' => 'sed', 'SEGI_07099' => 'sgi', 'SEGI_11931' => 'sgi', 'SEGI_13187' => 'sgi', 'SEGI_29958' => 'sgi', 'SEGI_36351' => 'sgi', 'SGA_v2.0_scaffold126G33770' => 'sas', 'SGA_v2.0_scaffold153G37003' => 'sas', 'SGA_v2.0_scaffold2G01359' => 'sas', 'SGA_v2.0_scaffold5G03064' => 'sas', 'SGA_v2.0_scaffold95G28903' => 'sas', 'SHI12701' => 'shi', 'SHI26410' => 'shi', 'SHI38997' => 'shi', 'SHI53759' => 'shi', 'SHI53886' => 'shi', 'SHI54714' => 'shi', 'SMO011G0041' => 'smo', 'SMO146G0251' => 'smo', 'SMO160G0004' => 'smo', 'SMO174G0057' => 'smo', 'SMO244G0089' => 'smo', 'SMO296G0011' => 'smo', 'Solyc01g091280.3' => 'sly', 'Solyc05g047610.3' => 'sly', 'Solyc05g047640.3' => 'sly', 'Solyc05g055630.3' => 'sly', 'Solyc10g018160.2' => 'sly', 'Solyc10g084820.2' => 'sly', 'Solyc10g086565.2' => 'sly', 'Sopen01g037030' => 'spe', 'Sopen05g027920' => 'spe', 'Sopen05g034070' => 'spe', 'Sopen10g007260' => 'spe', 'Sopen10g034260' => 'spe', 'Sopen10g035950' => 'spe', 'Sp3g07710' => 'spa', 'Sp4g27420' => 'spa', 'Sp5g02450' => 'spa', 'Sp6g01280' => 'spa', 'Sp6g38480' => 'spa', 'Sp7g20780' => 'spa', 'TAR374G1413' => 'tar', 'TAR623G1777' => 'tar', 'TAR629G2370' => 'tar', 'TAR633G1759' => 'tar', 'TAR636G3387' => 'tar', 'THA.LOC104802447' => 'tha', 'THA.LOC104813916' => 'tha', 'THA.LOC104816423' => 'tha', 'THA.LOC104817246' => 'tha', 'THA.LOC104825895' => 'tha', 'Thecc.01G335200' => 'tca', 'Thecc.01G377400' => 'tca', 'Thecc.03G262200' => 'tca', 'Thecc.05G036800' => 'tca', 'Thecc.10G080500' => 'tca', 'Thecc.10G080800' => 'tca', 'Thhalv10001560m.g' => 'esa', 'Thhalv10006120m.g' => 'esa', 'Thhalv10014375m.g' => 'esa', 'Thhalv10021264m.g' => 'esa', 'Thhalv10028856m.g' => 'esa', 'TPR.G1914' => 'tpr', 'TPR.G4757' => 'tpr', 'TPR.G5595' => 'tpr', 'TWI14G0952' => 'twi', 'TWI14G1307' => 'twi', 'TWI38G2143' => 'twi', 'TWI59G0826' => 'twi', 'TWI77G0527' => 'twi', 'TWI81G0150' => 'twi', 'unitig_21.g21018' => 'ugi', 'unitig_26.g9725' => 'ugi', 'unitig_744.g24653' => 'ugi', 'unitig_749.g13778' => 'ugi', 'unitig_899.g15035' => 'ugi', 'vmacro04296' => 'vma', 'vmacro04852' => 'vma', 'vmacro13404' => 'vma', 'vmacro20169' => 'vma', 'vmacro21014' => 'vma', 'VMungo0331G0237' => 'vmu', 'VMungo0331G0706' => 'vmu', 'VMungo0331G1361' => 'vmu', 'VMungo0331G1489' => 'vmu', 'VMungo0540G1037' => 'vmu', 'VMungo0720G2487' => 'vmu', 'VMungo0720G2721' => 'vmu', 'Zm00001eb086860' => 'zma', 'Zm00001eb104760' => 'zma', 'Zm00001eb148220' => 'zma', 'Zm00001eb259030' => 'zma', 'Zm00001eb289590' => 'zma', 'Zm00001eb420150' => 'zma' ) $gf_id = 'HOM05D000968' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000968' ) $data_identifier = 'HOM05D000968' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 19, 'bol' => (int) 9, 'bra' => (int) 12, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 5, 'ccan' => (int) 7, 'cde' => (int) 5, 'cfa' => (int) 8, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 4, 'dca' => (int) 5, 'din' => (int) 5, 'dzi' => (int) 12, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 25, 'fve' => (int) 5, 'gma' => (int) 9, 'ghi' => (int) 18, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 7, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 5, 'sun' => (int) 2, 'lal' => (int) 9, 'lja' => (int) 5, 'lonja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 9, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 2, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 3, 'stu' => (int) 6, 'pvu' => (int) 4, 'ptr' => (int) 8, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 3, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 1, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 5, 'sas' => (int) 5, 'shi' => (int) 6, 'smo' => (int) 6, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 3, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420150' $species_info = array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ) $local_species = 'aly' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000968', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p31690' => 'bna', 'A03p36040' => 'bna', 'A03p53730' => 'bna', 'A04p01410' => 'bna', 'A05p05420' => 'bna', 'A05p39630' => 'bna', 'A05p39640' => 'bna', 'A09p00970' => 'bna', 'A09p53060' => 'bna', 'A10p31890' => 'bna', 'Aa31LG10G15040' => 'aar', 'Aa31LG1G21090' => 'aar', 'Aa31LG1G26900' => 'aar', 'Aa31LG3G1820' => 'aar', 'Aa31LG5G1100' => 'aar', 'Aa31LG6G4740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2265' => 'aag', 'Actinidia07998' => 'ach', 'Actinidia11266' => 'ach', 'Actinidia12682' => 'ach', 'Actinidia26479' => 'ach', 'Actinidia31406' => 'ach', 'Actinidia32437' => 'ach', 'Actinidia38862' => 'ach', 'Ah.05g174230' => 'amhyb', 'Ah.05g179070' => 'amhyb', 'Ah.05g179090' => 'amhyb', 'Ah.12g059950' => 'amhyb', 'AL3G20480' => 'aly', 'AL4G44520' => 'aly', 'AL5G43110' => 'aly', 'AL6G13890' => 'aly', 'AL6G52620' => 'aly', 'AL7G30830' => 'aly', 'Aqoxy1G00899' => 'aox', 'Aqoxy5G04333' => 'aox', 'Aqoxy7G00641' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3IZ0NN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4EF6AW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W9P8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79GA3M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C43NQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFCU6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G95YVJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCHK29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LU1UG8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX91RN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGB4B1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8DA0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9H7JI' => 'arhy', 'AT3G09320' => 'ath', 'AT3G60800' => 'ath', 'AT4G00840' => 'ath', 'AT4G22750' => 'ath', 'AT5G04270' => 'ath', 'ATR0090G003' => 'atr', 'ATR0559G349' => 'atr', 'ATR0680G261' => 'atr', 'ATR0810G048' => 'atr', 'Atru.chr12.831' => 'acertr', 'Atru.chr5.303' => 'acertr', 'Atru.chr5.748' => 'acertr', 'Atru.chr8.1999' => 'acertr', 'Atru.chr9.1436' => 'acertr', 'AUR62004211' => 'cqu', 'AUR62004548' => 'cqu', 'AUR62013637' => 'cqu', 'AUR62022662' => 'cqu', 'AUR62025777' => 'cqu', 'AUR62042386' => 'cqu', 'BcaB01g02310' => 'bca', 'BcaB01g06062' => 'bca', 'BcaB02g08975' => 'bca', 'BcaB02g08980' => 'bca', 'BcaC01g04228' => 'bca', 'BcaC01g06830' => 'bca', 'BcaC02g10186' => 'bca', 'BcaC02g12214' => 'bca', 'BcaC04g24101' => 'bca', 'BcaC05g29520' => 'bca', 'BcaC05g29661' => 'bca', 'BcaC06g32130' => 'bca', 'BcaC06g32131' => 'bca', 'BcaC07g40601' => 'bca', 'BcaC07g42641' => 'bca', 'BcaNung01038' => 'bca', 'BcaNung01676' => 'bca', 'BcaNung02480' => 'bca', 'BcaNung07376' => 'bca', 'BolC3t16146H' => 'bol', 'BolC3t16637H' => 'bol', 'BolC4t22257H' => 'bol', 'BolC4t24728H' => 'bol', 'BolC5t34517H' => 'bol', 'BolC7t45703H' => 'bol', 'BolC8t51166H' => 'bol', 'BolC9t53038H' => 'bol', 'BolC9t60000H' => 'bol', 'BraA01t01345Z' => 'bra', 'BraA01t01346Z' => 'bra', 'BraA01t01348Z' => 'bra', 'BraA03t12347Z' => 'bra', 'BraA03t12775Z' => 'bra', 'BraA03t14439Z' => 'bra', 'BraA04t15860Z' => 'bra', 'BraA05t19511Z' => 'bra', 'BraA05t22746Z' => 'bra', 'BraA09t35767Z' => 'bra', 'BraA09t40732Z' => 'bra', 'BraA10t45233Z' => 'bra', 'C03p38720' => 'bna', 'C03p43680' => 'bna', 'C04p06350' => 'bna', 'C04p31800' => 'bna', 'C05p58680' => 'bna', 'C07p52110' => 'bna', 'C08p35760' => 'bna', 'C09p01050' => 'bna', 'C09p72600' => 'bna', 'CAN.G106.2' => 'can', 'CAN.G1482.1' => 'can', 'CAN.G324.12' => 'can', 'CAN.G388.20' => 'can', 'CAN.G412.7' => 'can', 'CAN.G694.32' => 'can', 'CAN.G92.12' => 'can', 'CANSAT11G2353' => 'cansat', 'CANSAT21G1398' => 'cansat', 'CANSAT56G2456' => 'cansat', 'CANSAT56G3031' => 'cansat', 'CANSAT56G4539' => 'cansat', 'CARHR083680' => 'chi', 'CARHR171190' => 'chi', 'CARHR209010' => 'chi', 'CARHR229680' => 'chi', 'CARHR249490' => 'chi', 'Carub.0003s0844' => 'cru', 'Carub.0005s2755' => 'cru', 'Carub.0006s0322' => 'cru', 'Carub.0006s3586' => 'cru', 'Carub.0007s1855' => 'cru', 'Ca_07808_v3' => 'car', 'Ca_09535_v3' => 'car', 'Ca_10548_v3' => 'car', 'Ca_19913_v3' => 'car', 'Ca_19916_v3' => 'car', 'Ca_19975_v3' => 'car', 'CBR_g22876' => 'cbr', 'CBR_g22879' => 'cbr', 'CBR_g38491' => 'cbr', 'CBR_g54185' => 'cbr', 'CBR_g54190' => 'cbr', 'Cc02_g11020' => 'ccan', 'Cc02_g23920' => 'ccan', 'Cc02_g39860' => 'ccan', 'Cc02_g39870' => 'ccan', 'Cc03_g06760' => 'ccan', 'Cc06_g02450' => 'ccan', 'Cc09_g09450' => 'ccan', 'CDE02G1959' => 'cde', 'CDE04G0600' => 'cde', 'CDE07G1996' => 'cde', 'CDE07G2078' => 'cde', 'CDE11G0611' => 'cde', 'Cfa001683' => 'cfa', 'Cfa001734' => 'cfa', 'Cfa001737' => 'cfa', 'Cfa003751' => 'cfa', 'Cfa012019' => 'cfa', 'Cfa017353' => 'cfa', 'Cfa017732' => 'cfa', 'Cfa022464' => 'cfa', 'Ciclev10012400m.g' => 'ccl', 'Ciclev10021242m.g' => 'ccl', 'Ciclev10021302m.g' => 'ccl', 'Ciclev10021463m.g' => 'ccl', 'Ciclev10032359m.g' => 'ccl', 'CiPaw.01G081000' => 'cil', 'CiPaw.01G262500' => 'cil', 'CiPaw.01G269800' => 'cil', 'CiPaw.02G168400' => 'cil', 'CiPaw.05G119500' => 'cil', 'CiPaw.11G147300' => 'cil', 'ClCG01G003630' => 'cla', 'ClCG05G000510' => 'cla', 'ClCG05G002300' => 'cla', 'ClCG08G007650' => 'cla', 'ClCG10G021250' => 'cla', 'COL.COLO4_06218' => 'col', 'COL.COLO4_12538' => 'col', 'COL.COLO4_14775' => 'col', 'COL.COLO4_23875' => 'col', 'Cpa.g.sc141.16' => 'cpa', 'Cpa.g.sc169.16' => 'cpa', 'Cpa.g.sc244.4' => 'cpa', 'Cpa.g.sc244.5' => 'cpa', 'Cpa.g.sc29.87' => 'cpa', 'Cpa.g.sc53.115' => 'cpa', 'Cre03.g207502' => 'cre', 'Cre06.g277000' => 'cre', 'Cre09.g394050' => 'cre', 'CsaV3_3G007680' => 'csa', 'CsaV3_3G009710' => 'csa', 'CsaV3_3G034790' => 'csa', 'CsaV3_5G003750' => 'csa', 'CsaV3_6G036620' => 'csa', 'CSS0002288' => 'camsi', 'CSS0011250' => 'camsi', 'CSS0021619' => 'camsi', 'CSS0046701' => 'camsi', 'DCAR_006420' => 'dca', 'DCAR_006865' => 'dca', 'DCAR_008558' => 'dca', 'DCAR_028754' => 'dca', 'DCAR_028755' => 'dca', 'Dinv31218' => 'din', 'Dinv32371' => 'din', 'Dinv34250' => 'din', 'Dinv37156' => 'din', 'Dinv43704' => 'din', 'Duzib093G1811' => 'dzi', 'Duzib106G1622' => 'dzi', 'Duzib114G0504' => 'dzi', 'Duzib128G0338' => 'dzi', 'Duzib128G1577' => 'dzi', 'Duzib133G0104' => 'dzi', 'Duzib133G1080' => 'dzi', 'Duzib138G0324' => 'dzi', 'Duzib138G0394' => 'dzi', 'Duzib205G0122' => 'dzi', 'Duzib268G1020' => 'dzi', 'Duzib268G1359' => 'dzi', 'ECA232G3929' => 'eca', 'ECA236G2210' => 'eca', 'ECA236G2287' => 'eca', 'ECA240G4568' => 'eca', 'ECA247G0894' => 'eca', 'EL10Ac1g00200' => 'bvu', 'EL10Ac1g00886' => 'bvu', 'EL10As1g23091' => 'bvu', 'EL10As1g23092' => 'bvu', 'Eucgr.A01284' => 'egr', 'Eucgr.A01285' => 'egr', 'Eucgr.D02456' => 'egr', 'Eucgr.E00018' => 'egr', 'Eucgr.E01439' => 'egr', 'Eucgr.G02859' => 'egr', 'FAN01G0168' => 'fan', 'FAN01G0453' => 'fan', 'FAN01G2761' => 'fan', 'FAN02G1239' => 'fan', 'FAN03G0645' => 'fan', 'FAN03G2707' => 'fan', 'FAN03G2978' => 'fan', 'FAN04G0227' => 'fan', 'FAN06G0091' => 'fan', 'FAN06G1418' => 'fan', 'FAN06G1512' => 'fan', 'FAN06G1986' => 'fan', 'FAN06G2905' => 'fan', 'FAN06G4325' => 'fan', 'FAN08G0033' => 'fan', 'FAN09G0642' => 'fan', 'FAN10G1763' => 'fan', 'FAN10G2026' => 'fan', 'FAN10G2513' => 'fan', 'FAN10G3402' => 'fan', 'FAN10G3564' => 'fan', 'FAN10G3987' => 'fan', 'FAN13G1490' => 'fan', 'FAN14G5857' => 'fan', 'FAN18G1188' => 'fan', 'FvH4_5g00750' => 'fve', 'FvH4_6g13410' => 'fve', 'FvH4_7g11740' => 'fve', 'FvH4_7g17410' => 'fve', 'FvH4_7g18860' => 'fve', 'Glyma.01G099100' => 'gma', 'Glyma.01G142300' => 'gma', 'Glyma.03G025500' => 'gma', 'Glyma.03G069700' => 'gma', 'Glyma.03G260000' => 'gma', 'Glyma.09G269800' => 'gma', 'Glyma.10G208700' => 'gma', 'Glyma.18G220400' => 'gma', 'Glyma.20G182000' => 'gma', 'Gohir.A01G221726' => 'ghi', 'Gohir.A07G134600' => 'ghi', 'Gohir.A07G146000' => 'ghi', 'Gohir.A08G173900' => 'ghi', 'Gohir.A09G194900' => 'ghi', 'Gohir.A10G204100' => 'ghi', 'Gohir.A11G080600' => 'ghi', 'Gohir.A11G327500' => 'ghi', 'Gohir.A12G101800' => 'ghi', 'Gohir.D01G211200' => 'ghi', 'Gohir.D07G139200' => 'ghi', 'Gohir.D07G152100' => 'ghi', 'Gohir.D08G192600' => 'ghi', 'Gohir.D09G189200' => 'ghi', 'Gohir.D10G212000' => 'ghi', 'Gohir.D11G085200' => 'ghi', 'Gohir.D11G346400' => 'ghi', 'Gohir.D12G104800' => 'ghi', 'Gorai.001G151300' => 'gra', 'Gorai.001G174100' => 'gra', 'Gorai.002G257000' => 'gra', 'Gorai.004G202600' => 'gra', 'Gorai.007G090900' => 'gra', 'Gorai.007G376700' => 'gra', 'Gorai.008G114100' => 'gra', 'Gorai.011G237900' => 'gra', 'GSVIVG01005450001' => 'vvi', 'GSVIVG01016232001' => 'vvi', 'GSVIVG01026157001' => 'vvi', 'GSVIVG01027419001' => 'vvi', 'GSVIVG01027631001' => 'vvi', 'GSVIVG01034143001' => 'vvi', 'HanXRQChr03g0093921' => 'han', 'HanXRQChr04g0120001' => 'han', 'HanXRQChr04g0122561' => 'han', 'HanXRQChr09g0246851' => 'han', 'HanXRQChr10g0293311' => 'han', 'HanXRQChr13g0425231' => 'han', 'HanXRQChr16g0532571' => 'han', 'Haze_09050' => 'cav', 'Haze_15715' => 'cav', 'Haze_15716' => 'cav', 'Haze_16803' => 'cav', 'Haze_16850' => 'cav', 'Hma1.2p1_0301F.1_g118655' => 'hma', 'Hma1.2p1_0309F.1_g120590' => 'hma', 'Hma1.2p1_0936F.1_g238900' => 'hma', 'Hma1.2p1_3552F.1_g336740' => 'hma', 'HPP92_003520' => 'vpl', 'HPP92_006628' => 'vpl', 'HPP92_006645' => 'vpl', 'HPP92_014669' => 'vpl', 'HPP92_015077' => 'vpl', 'Hund16742' => 'sun', 'Hund17022' => 'sun', 'Lalb_Chr02g0152131' => 'lal', 'Lalb_Chr05g0225371' => 'lal', 'Lalb_Chr07g0189841' => 'lal', 'Lalb_Chr07g0192961' => 'lal', 'Lalb_Chr12g0208221' => 'lal', 'Lalb_Chr13g0291211' => 'lal', 'Lalb_Chr13g0291781' => 'lal', 'Lalb_Chr18g0044651' => 'lal', 'Lalb_Chr21g0313731' => 'lal', 'Lj1g0022533' => 'lja', 'Lj2A18T50' => 'lonja', 'Lj2A92G93' => 'lonja', 'Lj3A965T73' => 'lonja', 'Lj3g0000673' => 'lja', 'Lj3g0002666' => 'lja', 'Lj4g0016985' => 'lja', 'Lj5g0003625' => 'lja', 'Lj7A529G36' => 'lonja', 'Lj9A569T49' => 'lonja', 'Lj9A604T63' => 'lonja', 'Lsat_1_v5_gn_3_132060' => 'lsa', 'Lsat_1_v5_gn_4_68941' => 'lsa', 'Lsat_1_v5_gn_5_95580' => 'lsa', 'Lsat_1_v5_gn_7_161' => 'lsa', 'Lsat_1_v5_gn_7_7041' => 'lsa', 'Lsat_1_v5_gn_9_33481' => 'lsa', 'Lsat_1_v5_gn_9_68260' => 'lsa', 'Manes.01G073100' => 'mes', 'Manes.01G266300' => 'mes', 'Manes.02G033300' => 'mes', 'Manes.05G017900' => 'mes', 'Manes.05G046100' => 'mes', 'Manes.08G080900' => 'mes', 'Manes.10G049400' => 'mes', 'Mapoly0009s0186' => 'mpo', 'Mapoly0036s0118' => 'mpo', 'Mapoly0101s0046' => 'mpo', 'MBI04_g30218_MAGBIO' => 'mbi', 'MBI04_g35564_MAGBIO' => 'mbi', 'MBI12_g34011_MAGBIO' => 'mbi', 'MBI14_g04655_MAGBIO' => 'mbi', 'MCO07G653' => 'mco', 'MCO10G173' => 'mco', 'MD01G1087100' => 'mdo', 'MD01G1104200' => 'mdo', 'MD02G1205100' => 'mdo', 'MD04G1079200' => 'mdo', 'MD04G1131400' => 'mdo', 'MD07G1121600' => 'mdo', 'MD07G1157300' => 'mdo', 'MD07G1171000' => 'mdo', 'MD12G1144500' => 'mdo', 'Medtr1g094610' => 'mtr', 'Medtr4g021795' => 'mtr', 'Medtr4g023760' => 'mtr', 'Medtr7g118050' => 'mtr', 'MELO3C005582.2' => 'cme', 'MELO3C005989.2' => 'cme', 'MELO3C006192.2' => 'cme', 'MELO3C009248.2' => 'cme', 'MELO3C019817.2' => 'cme', 'Migut.B01625' => 'egut', 'Migut.B01915' => 'egut', 'Migut.F01721' => 'egut', 'Migut.J00314' => 'egut', 'MSTRG.20742' => 'ama', 'MSTRG.8134' => 'ama', 'Nitab4.5_0000096g0010' => 'nta', 'Nitab4.5_0000202g0030' => 'nta', 'Nitab4.5_0000216g0370' => 'nta', 'Nitab4.5_0000457g0230' => 'nta', 'Nitab4.5_0001702g0170' => 'nta', 'Nitab4.5_0003607g0010' => 'nta', 'Nitab4.5_0004917g0020' => 'nta', 'Nitab4.5_0007059g0010' => 'nta', 'Nitab4.5_0007184g0010' => 'nta', 'Nitab4.5_0007346g0020' => 'nta', 'Nn1g00410' => 'nnu', 'Nn1g01252' => 'nnu', 'Nn2g11168' => 'nnu', 'Nn2g13403' => 'nnu', 'Nn2g13760' => 'nnu', 'Nn4g26380' => 'nnu', 'Oeu000806.2' => 'oeu', 'Oeu005788.1' => 'oeu', 'Oeu006900.3' => 'oeu', 'Oeu007797.1' => 'oeu', 'Oeu011932.1' => 'oeu', 'Oeu022739.1' => 'oeu', 'Oeu037918.1' => 'oeu', 'Oeu055490.2' => 'oeu', 'Os01g0844400' => 'osa', 'Os02g0819100' => 'osa', 'Os03g0804300' => 'osa', 'Os05g0458000' => 'osa', 'Os07g0467800' => 'osa', 'Os12g0602200' => 'osa', 'Peaxi162Scf00013g03444' => 'pax', 'Peaxi162Scf00094g01120' => 'pax', 'Peaxi162Scf00191g01211' => 'pax', 'Peaxi162Scf00238g01110' => 'pax', 'Peaxi162Scf00330g00719' => 'pax', 'Peaxi162Scf00627g00018' => 'pax', 'PGR031G2686' => 'pgr', 'PGR042G0809' => 'pgr', 'PGR142G0193' => 'pgr', 'PGSC0003DMG400011066' => 'stu', 'PGSC0003DMG400012041' => 'stu', 'PGSC0003DMG400013678' => 'stu', 'PGSC0003DMG400023477' => 'stu', 'PGSC0003DMG400025956' => 'stu', 'PGSC0003DMG401019151' => 'stu', 'Phvul.006G116400' => 'pvu', 'Phvul.007G097300' => 'pvu', 'Phvul.010G015000' => 'pvu', 'Phvul.010G083900' => 'pvu', 'Potri.001G117100' => 'ptr', 'Potri.002G147300' => 'ptr', 'Potri.003G115600' => 'ptr', 'Potri.006G087400' => 'ptr', 'Potri.010G226100' => 'ptr', 'Potri.014G069200' => 'ptr', 'Potri.014G104000' => 'ptr', 'Potri.016G100200' => 'ptr', 'Pp3c10_20450' => 'ppa', 'Pp3c1_42400' => 'ppa', 'Pp3c3_24390' => 'ppa', 'Pp3c3_2860' => 'ppa', 'PRCOL_00003193' => 'pco', 'Prupe.2G144500' => 'ppe', 'Prupe.2G195700' => 'ppe', 'Prupe.2G209800' => 'ppe', 'Prupe.5G080000' => 'ppe', 'Prupe.6G257900' => 'ppe', 'Psat3g001160' => 'psa', 'Psat6g181880' => 'psa', 'Psat7g233720' => 'psa', 'PSO063G7587' => 'pso', 'PSO339G2145' => 'pso', 'PSO339G3369' => 'pso', 'PSO478G2747' => 'pso', 'PSO513G0140' => 'pso', 'PSO782G1614' => 'pso', 'PSO782G4889' => 'pso', 'PSO782G5485' => 'pso', 'PSO801G0241' => 'pso', 'QL07p048854' => 'qlo', 'QL08p046745' => 'qlo', 'QL08p052606' => 'qlo', 'QL08p053414' => 'qlo', 'QL08p054868' => 'qlo', 'RcHm_v2.0_Chr1g0350251' => 'rch', 'RcHm_v2.0_Chr1g0360851' => 'rch', 'RcHm_v2.0_Chr1g0362791' => 'rch', 'RcHm_v2.0_Chr3g0466281' => 'rch', 'RcHm_v2.0_Chr7g0201481' => 'rch', 'Rhsim01G0148600' => 'rsi', 'Rhsim05G0194400' => 'rsi', 'Rhsim07G0000700' => 'rsi', 'Rhsim07G0000800' => 'rsi', 'Rhsim07G0027900' => 'rsi', 'Rhsim09G0149500' => 'rsi', 'RhsimUnG0186900' => 'rsi', 'Sabra01G0089900' => 'sbr', 'Sabra02G0114700' => 'sbr', 'Sabra02G0116300' => 'sbr', 'Sabra03G0080100' => 'sbr', 'Sabra08G0024300' => 'sbr', 'Sabra10G0174300' => 'sbr', 'Sabra14G0048900' => 'sbr', 'Sabra14G0076500' => 'sbr', 'SalBow5G2513' => 'sbo', 'Sc01g0002300' => 'sci', 'Sc01g0004450' => 'sci', 'Sc06g0001680' => 'sci', 'Sc23g0003580' => 'sci', 'Sed0000913' => 'sed', 'Sed0001655' => 'sed', 'Sed0007745' => 'sed', 'Sed0010951' => 'sed', 'Sed0017599' => 'sed', 'Sed0021405' => 'sed', 'Sed0022810' => 'sed', 'SEGI_07099' => 'sgi', 'SEGI_11931' => 'sgi', 'SEGI_13187' => 'sgi', 'SEGI_29958' => 'sgi', 'SEGI_36351' => 'sgi', 'SGA_v2.0_scaffold126G33770' => 'sas', 'SGA_v2.0_scaffold153G37003' => 'sas', 'SGA_v2.0_scaffold2G01359' => 'sas', 'SGA_v2.0_scaffold5G03064' => 'sas', 'SGA_v2.0_scaffold95G28903' => 'sas', 'SHI12701' => 'shi', 'SHI26410' => 'shi', 'SHI38997' => 'shi', 'SHI53759' => 'shi', 'SHI53886' => 'shi', 'SHI54714' => 'shi', 'SMO011G0041' => 'smo', 'SMO146G0251' => 'smo', 'SMO160G0004' => 'smo', 'SMO174G0057' => 'smo', 'SMO244G0089' => 'smo', 'SMO296G0011' => 'smo', 'Solyc01g091280.3' => 'sly', 'Solyc05g047610.3' => 'sly', 'Solyc05g047640.3' => 'sly', 'Solyc05g055630.3' => 'sly', 'Solyc10g018160.2' => 'sly', 'Solyc10g084820.2' => 'sly', 'Solyc10g086565.2' => 'sly', 'Sopen01g037030' => 'spe', 'Sopen05g027920' => 'spe', 'Sopen05g034070' => 'spe', 'Sopen10g007260' => 'spe', 'Sopen10g034260' => 'spe', 'Sopen10g035950' => 'spe', 'Sp3g07710' => 'spa', 'Sp4g27420' => 'spa', 'Sp5g02450' => 'spa', 'Sp6g01280' => 'spa', 'Sp6g38480' => 'spa', 'Sp7g20780' => 'spa', 'TAR374G1413' => 'tar', 'TAR623G1777' => 'tar', 'TAR629G2370' => 'tar', 'TAR633G1759' => 'tar', 'TAR636G3387' => 'tar', 'THA.LOC104802447' => 'tha', 'THA.LOC104813916' => 'tha', 'THA.LOC104816423' => 'tha', 'THA.LOC104817246' => 'tha', 'THA.LOC104825895' => 'tha', 'Thecc.01G335200' => 'tca', 'Thecc.01G377400' => 'tca', 'Thecc.03G262200' => 'tca', 'Thecc.05G036800' => 'tca', 'Thecc.10G080500' => 'tca', 'Thecc.10G080800' => 'tca', 'Thhalv10001560m.g' => 'esa', 'Thhalv10006120m.g' => 'esa', 'Thhalv10014375m.g' => 'esa', 'Thhalv10021264m.g' => 'esa', 'Thhalv10028856m.g' => 'esa', 'TPR.G1914' => 'tpr', 'TPR.G4757' => 'tpr', 'TPR.G5595' => 'tpr', 'TWI14G0952' => 'twi', 'TWI14G1307' => 'twi', 'TWI38G2143' => 'twi', 'TWI59G0826' => 'twi', 'TWI77G0527' => 'twi', 'TWI81G0150' => 'twi', 'unitig_21.g21018' => 'ugi', 'unitig_26.g9725' => 'ugi', 'unitig_744.g24653' => 'ugi', 'unitig_749.g13778' => 'ugi', 'unitig_899.g15035' => 'ugi', 'vmacro04296' => 'vma', 'vmacro04852' => 'vma', 'vmacro13404' => 'vma', 'vmacro20169' => 'vma', 'vmacro21014' => 'vma', 'VMungo0331G0237' => 'vmu', 'VMungo0331G0706' => 'vmu', 'VMungo0331G1361' => 'vmu', 'VMungo0331G1489' => 'vmu', 'VMungo0540G1037' => 'vmu', 'VMungo0720G2487' => 'vmu', 'VMungo0720G2721' => 'vmu', 'Zm00001eb086860' => 'zma', 'Zm00001eb104760' => 'zma', 'Zm00001eb148220' => 'zma', 'Zm00001eb259030' => 'zma', 'Zm00001eb289590' => 'zma', 'Zm00001eb420150' => 'zma' ), 'gf_id' => 'HOM05D000968', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000968' ), 'data_identifier' => 'HOM05D000968', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000968', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p31690' => 'bna', 'A03p36040' => 'bna', 'A03p53730' => 'bna', 'A04p01410' => 'bna', 'A05p05420' => 'bna', 'A05p39630' => 'bna', 'A05p39640' => 'bna', 'A09p00970' => 'bna', 'A09p53060' => 'bna', 'A10p31890' => 'bna', 'Aa31LG10G15040' => 'aar', 'Aa31LG1G21090' => 'aar', 'Aa31LG1G26900' => 'aar', 'Aa31LG3G1820' => 'aar', 'Aa31LG5G1100' => 'aar', 'Aa31LG6G4740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2265' => 'aag', 'Actinidia07998' => 'ach', 'Actinidia11266' => 'ach', 'Actinidia12682' => 'ach', 'Actinidia26479' => 'ach', 'Actinidia31406' => 'ach', 'Actinidia32437' => 'ach', 'Actinidia38862' => 'ach', 'Ah.05g174230' => 'amhyb', 'Ah.05g179070' => 'amhyb', 'Ah.05g179090' => 'amhyb', 'Ah.12g059950' => 'amhyb', 'AL3G20480' => 'aly', 'AL4G44520' => 'aly', 'AL5G43110' => 'aly', 'AL6G13890' => 'aly', 'AL6G52620' => 'aly', 'AL7G30830' => 'aly', 'Aqoxy1G00899' => 'aox', 'Aqoxy5G04333' => 'aox', 'Aqoxy7G00641' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3IZ0NN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4EF6AW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W9P8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79GA3M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C43NQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFCU6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G95YVJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCHK29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LU1UG8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX91RN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGB4B1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8DA0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9H7JI' => 'arhy', 'AT3G09320' => 'ath', 'AT3G60800' => 'ath', 'AT4G00840' => 'ath', 'AT4G22750' => 'ath', 'AT5G04270' => 'ath', 'ATR0090G003' => 'atr', 'ATR0559G349' => 'atr', 'ATR0680G261' => 'atr', 'ATR0810G048' => 'atr', 'Atru.chr12.831' => 'acertr', 'Atru.chr5.303' => 'acertr', 'Atru.chr5.748' => 'acertr', 'Atru.chr8.1999' => 'acertr', 'Atru.chr9.1436' => 'acertr', 'AUR62004211' => 'cqu', 'AUR62004548' => 'cqu', 'AUR62013637' => 'cqu', 'AUR62022662' => 'cqu', 'AUR62025777' => 'cqu', 'AUR62042386' => 'cqu', 'BcaB01g02310' => 'bca', 'BcaB01g06062' => 'bca', 'BcaB02g08975' => 'bca', 'BcaB02g08980' => 'bca', 'BcaC01g04228' => 'bca', 'BcaC01g06830' => 'bca', 'BcaC02g10186' => 'bca', 'BcaC02g12214' => 'bca', 'BcaC04g24101' => 'bca', 'BcaC05g29520' => 'bca', 'BcaC05g29661' => 'bca', 'BcaC06g32130' => 'bca', 'BcaC06g32131' => 'bca', 'BcaC07g40601' => 'bca', 'BcaC07g42641' => 'bca', 'BcaNung01038' => 'bca', 'BcaNung01676' => 'bca', 'BcaNung02480' => 'bca', 'BcaNung07376' => 'bca', 'BolC3t16146H' => 'bol', 'BolC3t16637H' => 'bol', 'BolC4t22257H' => 'bol', 'BolC4t24728H' => 'bol', 'BolC5t34517H' => 'bol', 'BolC7t45703H' => 'bol', 'BolC8t51166H' => 'bol', 'BolC9t53038H' => 'bol', 'BolC9t60000H' => 'bol', 'BraA01t01345Z' => 'bra', 'BraA01t01346Z' => 'bra', 'BraA01t01348Z' => 'bra', 'BraA03t12347Z' => 'bra', 'BraA03t12775Z' => 'bra', 'BraA03t14439Z' => 'bra', 'BraA04t15860Z' => 'bra', 'BraA05t19511Z' => 'bra', 'BraA05t22746Z' => 'bra', 'BraA09t35767Z' => 'bra', 'BraA09t40732Z' => 'bra', 'BraA10t45233Z' => 'bra', 'C03p38720' => 'bna', 'C03p43680' => 'bna', 'C04p06350' => 'bna', 'C04p31800' => 'bna', 'C05p58680' => 'bna', 'C07p52110' => 'bna', 'C08p35760' => 'bna', 'C09p01050' => 'bna', 'C09p72600' => 'bna', 'CAN.G106.2' => 'can', 'CAN.G1482.1' => 'can', 'CAN.G324.12' => 'can', 'CAN.G388.20' => 'can', 'CAN.G412.7' => 'can', 'CAN.G694.32' => 'can', 'CAN.G92.12' => 'can', 'CANSAT11G2353' => 'cansat', 'CANSAT21G1398' => 'cansat', 'CANSAT56G2456' => 'cansat', 'CANSAT56G3031' => 'cansat', 'CANSAT56G4539' => 'cansat', 'CARHR083680' => 'chi', 'CARHR171190' => 'chi', 'CARHR209010' => 'chi', 'CARHR229680' => 'chi', 'CARHR249490' => 'chi', 'Carub.0003s0844' => 'cru', 'Carub.0005s2755' => 'cru', 'Carub.0006s0322' => 'cru', 'Carub.0006s3586' => 'cru', 'Carub.0007s1855' => 'cru', 'Ca_07808_v3' => 'car', 'Ca_09535_v3' => 'car', 'Ca_10548_v3' => 'car', 'Ca_19913_v3' => 'car', 'Ca_19916_v3' => 'car', 'Ca_19975_v3' => 'car', 'CBR_g22876' => 'cbr', 'CBR_g22879' => 'cbr', 'CBR_g38491' => 'cbr', 'CBR_g54185' => 'cbr', 'CBR_g54190' => 'cbr', 'Cc02_g11020' => 'ccan', 'Cc02_g23920' => 'ccan', 'Cc02_g39860' => 'ccan', 'Cc02_g39870' => 'ccan', 'Cc03_g06760' => 'ccan', 'Cc06_g02450' => 'ccan', 'Cc09_g09450' => 'ccan', 'CDE02G1959' => 'cde', 'CDE04G0600' => 'cde', 'CDE07G1996' => 'cde', 'CDE07G2078' => 'cde', 'CDE11G0611' => 'cde', 'Cfa001683' => 'cfa', 'Cfa001734' => 'cfa', 'Cfa001737' => 'cfa', 'Cfa003751' => 'cfa', 'Cfa012019' => 'cfa', 'Cfa017353' => 'cfa', 'Cfa017732' => 'cfa', 'Cfa022464' => 'cfa', 'Ciclev10012400m.g' => 'ccl', 'Ciclev10021242m.g' => 'ccl', 'Ciclev10021302m.g' => 'ccl', 'Ciclev10021463m.g' => 'ccl', 'Ciclev10032359m.g' => 'ccl', 'CiPaw.01G081000' => 'cil', 'CiPaw.01G262500' => 'cil', 'CiPaw.01G269800' => 'cil', 'CiPaw.02G168400' => 'cil', 'CiPaw.05G119500' => 'cil', 'CiPaw.11G147300' => 'cil', 'ClCG01G003630' => 'cla', 'ClCG05G000510' => 'cla', 'ClCG05G002300' => 'cla', 'ClCG08G007650' => 'cla', 'ClCG10G021250' => 'cla', 'COL.COLO4_06218' => 'col', 'COL.COLO4_12538' => 'col', 'COL.COLO4_14775' => 'col', 'COL.COLO4_23875' => 'col', 'Cpa.g.sc141.16' => 'cpa', 'Cpa.g.sc169.16' => 'cpa', 'Cpa.g.sc244.4' => 'cpa', 'Cpa.g.sc244.5' => 'cpa', 'Cpa.g.sc29.87' => 'cpa', 'Cpa.g.sc53.115' => 'cpa', 'Cre03.g207502' => 'cre', 'Cre06.g277000' => 'cre', 'Cre09.g394050' => 'cre', 'CsaV3_3G007680' => 'csa', 'CsaV3_3G009710' => 'csa', 'CsaV3_3G034790' => 'csa', 'CsaV3_5G003750' => 'csa', 'CsaV3_6G036620' => 'csa', 'CSS0002288' => 'camsi', 'CSS0011250' => 'camsi', 'CSS0021619' => 'camsi', 'CSS0046701' => 'camsi', 'DCAR_006420' => 'dca', 'DCAR_006865' => 'dca', 'DCAR_008558' => 'dca', 'DCAR_028754' => 'dca', 'DCAR_028755' => 'dca', 'Dinv31218' => 'din', 'Dinv32371' => 'din', 'Dinv34250' => 'din', 'Dinv37156' => 'din', 'Dinv43704' => 'din', 'Duzib093G1811' => 'dzi', 'Duzib106G1622' => 'dzi', 'Duzib114G0504' => 'dzi', 'Duzib128G0338' => 'dzi', 'Duzib128G1577' => 'dzi', 'Duzib133G0104' => 'dzi', 'Duzib133G1080' => 'dzi', 'Duzib138G0324' => 'dzi', 'Duzib138G0394' => 'dzi', 'Duzib205G0122' => 'dzi', 'Duzib268G1020' => 'dzi', 'Duzib268G1359' => 'dzi', 'ECA232G3929' => 'eca', 'ECA236G2210' => 'eca', 'ECA236G2287' => 'eca', 'ECA240G4568' => 'eca', 'ECA247G0894' => 'eca', 'EL10Ac1g00200' => 'bvu', 'EL10Ac1g00886' => 'bvu', 'EL10As1g23091' => 'bvu', 'EL10As1g23092' => 'bvu', 'Eucgr.A01284' => 'egr', 'Eucgr.A01285' => 'egr', 'Eucgr.D02456' => 'egr', 'Eucgr.E00018' => 'egr', 'Eucgr.E01439' => 'egr', 'Eucgr.G02859' => 'egr', 'FAN01G0168' => 'fan', 'FAN01G0453' => 'fan', 'FAN01G2761' => 'fan', 'FAN02G1239' => 'fan', 'FAN03G0645' => 'fan', 'FAN03G2707' => 'fan', 'FAN03G2978' => 'fan', 'FAN04G0227' => 'fan', 'FAN06G0091' => 'fan', 'FAN06G1418' => 'fan', 'FAN06G1512' => 'fan', 'FAN06G1986' => 'fan', 'FAN06G2905' => 'fan', 'FAN06G4325' => 'fan', 'FAN08G0033' => 'fan', 'FAN09G0642' => 'fan', 'FAN10G1763' => 'fan', 'FAN10G2026' => 'fan', 'FAN10G2513' => 'fan', 'FAN10G3402' => 'fan', 'FAN10G3564' => 'fan', 'FAN10G3987' => 'fan', 'FAN13G1490' => 'fan', 'FAN14G5857' => 'fan', 'FAN18G1188' => 'fan', 'FvH4_5g00750' => 'fve', 'FvH4_6g13410' => 'fve', 'FvH4_7g11740' => 'fve', 'FvH4_7g17410' => 'fve', 'FvH4_7g18860' => 'fve', 'Glyma.01G099100' => 'gma', 'Glyma.01G142300' => 'gma', 'Glyma.03G025500' => 'gma', 'Glyma.03G069700' => 'gma', 'Glyma.03G260000' => 'gma', 'Glyma.09G269800' => 'gma', 'Glyma.10G208700' => 'gma', 'Glyma.18G220400' => 'gma', 'Glyma.20G182000' => 'gma', 'Gohir.A01G221726' => 'ghi', 'Gohir.A07G134600' => 'ghi', 'Gohir.A07G146000' => 'ghi', 'Gohir.A08G173900' => 'ghi', 'Gohir.A09G194900' => 'ghi', 'Gohir.A10G204100' => 'ghi', 'Gohir.A11G080600' => 'ghi', 'Gohir.A11G327500' => 'ghi', 'Gohir.A12G101800' => 'ghi', 'Gohir.D01G211200' => 'ghi', 'Gohir.D07G139200' => 'ghi', 'Gohir.D07G152100' => 'ghi', 'Gohir.D08G192600' => 'ghi', 'Gohir.D09G189200' => 'ghi', 'Gohir.D10G212000' => 'ghi', 'Gohir.D11G085200' => 'ghi', 'Gohir.D11G346400' => 'ghi', 'Gohir.D12G104800' => 'ghi', 'Gorai.001G151300' => 'gra', 'Gorai.001G174100' => 'gra', 'Gorai.002G257000' => 'gra', 'Gorai.004G202600' => 'gra', 'Gorai.007G090900' => 'gra', 'Gorai.007G376700' => 'gra', 'Gorai.008G114100' => 'gra', 'Gorai.011G237900' => 'gra', 'GSVIVG01005450001' => 'vvi', 'GSVIVG01016232001' => 'vvi', 'GSVIVG01026157001' => 'vvi', 'GSVIVG01027419001' => 'vvi', 'GSVIVG01027631001' => 'vvi', 'GSVIVG01034143001' => 'vvi', 'HanXRQChr03g0093921' => 'han', 'HanXRQChr04g0120001' => 'han', 'HanXRQChr04g0122561' => 'han', 'HanXRQChr09g0246851' => 'han', 'HanXRQChr10g0293311' => 'han', 'HanXRQChr13g0425231' => 'han', 'HanXRQChr16g0532571' => 'han', 'Haze_09050' => 'cav', 'Haze_15715' => 'cav', 'Haze_15716' => 'cav', 'Haze_16803' => 'cav', 'Haze_16850' => 'cav', 'Hma1.2p1_0301F.1_g118655' => 'hma', 'Hma1.2p1_0309F.1_g120590' => 'hma', 'Hma1.2p1_0936F.1_g238900' => 'hma', 'Hma1.2p1_3552F.1_g336740' => 'hma', 'HPP92_003520' => 'vpl', 'HPP92_006628' => 'vpl', 'HPP92_006645' => 'vpl', 'HPP92_014669' => 'vpl', 'HPP92_015077' => 'vpl', 'Hund16742' => 'sun', 'Hund17022' => 'sun', 'Lalb_Chr02g0152131' => 'lal', 'Lalb_Chr05g0225371' => 'lal', 'Lalb_Chr07g0189841' => 'lal', 'Lalb_Chr07g0192961' => 'lal', 'Lalb_Chr12g0208221' => 'lal', 'Lalb_Chr13g0291211' => 'lal', 'Lalb_Chr13g0291781' => 'lal', 'Lalb_Chr18g0044651' => 'lal', 'Lalb_Chr21g0313731' => 'lal', 'Lj1g0022533' => 'lja', 'Lj2A18T50' => 'lonja', 'Lj2A92G93' => 'lonja', 'Lj3A965T73' => 'lonja', 'Lj3g0000673' => 'lja', 'Lj3g0002666' => 'lja', 'Lj4g0016985' => 'lja', 'Lj5g0003625' => 'lja', 'Lj7A529G36' => 'lonja', 'Lj9A569T49' => 'lonja', 'Lj9A604T63' => 'lonja', 'Lsat_1_v5_gn_3_132060' => 'lsa', 'Lsat_1_v5_gn_4_68941' => 'lsa', 'Lsat_1_v5_gn_5_95580' => 'lsa', 'Lsat_1_v5_gn_7_161' => 'lsa', 'Lsat_1_v5_gn_7_7041' => 'lsa', 'Lsat_1_v5_gn_9_33481' => 'lsa', 'Lsat_1_v5_gn_9_68260' => 'lsa', 'Manes.01G073100' => 'mes', 'Manes.01G266300' => 'mes', 'Manes.02G033300' => 'mes', 'Manes.05G017900' => 'mes', 'Manes.05G046100' => 'mes', 'Manes.08G080900' => 'mes', 'Manes.10G049400' => 'mes', 'Mapoly0009s0186' => 'mpo', 'Mapoly0036s0118' => 'mpo', 'Mapoly0101s0046' => 'mpo', 'MBI04_g30218_MAGBIO' => 'mbi', 'MBI04_g35564_MAGBIO' => 'mbi', 'MBI12_g34011_MAGBIO' => 'mbi', 'MBI14_g04655_MAGBIO' => 'mbi', 'MCO07G653' => 'mco', 'MCO10G173' => 'mco', 'MD01G1087100' => 'mdo', 'MD01G1104200' => 'mdo', 'MD02G1205100' => 'mdo', 'MD04G1079200' => 'mdo', 'MD04G1131400' => 'mdo', 'MD07G1121600' => 'mdo', 'MD07G1157300' => 'mdo', 'MD07G1171000' => 'mdo', 'MD12G1144500' => 'mdo', 'Medtr1g094610' => 'mtr', 'Medtr4g021795' => 'mtr', 'Medtr4g023760' => 'mtr', 'Medtr7g118050' => 'mtr', 'MELO3C005582.2' => 'cme', 'MELO3C005989.2' => 'cme', 'MELO3C006192.2' => 'cme', 'MELO3C009248.2' => 'cme', 'MELO3C019817.2' => 'cme', 'Migut.B01625' => 'egut', 'Migut.B01915' => 'egut', 'Migut.F01721' => 'egut', 'Migut.J00314' => 'egut', 'MSTRG.20742' => 'ama', 'MSTRG.8134' => 'ama', 'Nitab4.5_0000096g0010' => 'nta', 'Nitab4.5_0000202g0030' => 'nta', 'Nitab4.5_0000216g0370' => 'nta', 'Nitab4.5_0000457g0230' => 'nta', 'Nitab4.5_0001702g0170' => 'nta', 'Nitab4.5_0003607g0010' => 'nta', 'Nitab4.5_0004917g0020' => 'nta', 'Nitab4.5_0007059g0010' => 'nta', 'Nitab4.5_0007184g0010' => 'nta', 'Nitab4.5_0007346g0020' => 'nta', 'Nn1g00410' => 'nnu', 'Nn1g01252' => 'nnu', 'Nn2g11168' => 'nnu', 'Nn2g13403' => 'nnu', 'Nn2g13760' => 'nnu', 'Nn4g26380' => 'nnu', 'Oeu000806.2' => 'oeu', 'Oeu005788.1' => 'oeu', 'Oeu006900.3' => 'oeu', 'Oeu007797.1' => 'oeu', 'Oeu011932.1' => 'oeu', 'Oeu022739.1' => 'oeu', 'Oeu037918.1' => 'oeu', 'Oeu055490.2' => 'oeu', 'Os01g0844400' => 'osa', 'Os02g0819100' => 'osa', 'Os03g0804300' => 'osa', 'Os05g0458000' => 'osa', 'Os07g0467800' => 'osa', 'Os12g0602200' => 'osa', 'Peaxi162Scf00013g03444' => 'pax', 'Peaxi162Scf00094g01120' => 'pax', 'Peaxi162Scf00191g01211' => 'pax', 'Peaxi162Scf00238g01110' => 'pax', 'Peaxi162Scf00330g00719' => 'pax', 'Peaxi162Scf00627g00018' => 'pax', 'PGR031G2686' => 'pgr', 'PGR042G0809' => 'pgr', 'PGR142G0193' => 'pgr', 'PGSC0003DMG400011066' => 'stu', 'PGSC0003DMG400012041' => 'stu', 'PGSC0003DMG400013678' => 'stu', 'PGSC0003DMG400023477' => 'stu', 'PGSC0003DMG400025956' => 'stu', 'PGSC0003DMG401019151' => 'stu', 'Phvul.006G116400' => 'pvu', 'Phvul.007G097300' => 'pvu', 'Phvul.010G015000' => 'pvu', 'Phvul.010G083900' => 'pvu', 'Potri.001G117100' => 'ptr', 'Potri.002G147300' => 'ptr', 'Potri.003G115600' => 'ptr', 'Potri.006G087400' => 'ptr', 'Potri.010G226100' => 'ptr', 'Potri.014G069200' => 'ptr', 'Potri.014G104000' => 'ptr', 'Potri.016G100200' => 'ptr', 'Pp3c10_20450' => 'ppa', 'Pp3c1_42400' => 'ppa', 'Pp3c3_24390' => 'ppa', 'Pp3c3_2860' => 'ppa', 'PRCOL_00003193' => 'pco', 'Prupe.2G144500' => 'ppe', 'Prupe.2G195700' => 'ppe', 'Prupe.2G209800' => 'ppe', 'Prupe.5G080000' => 'ppe', 'Prupe.6G257900' => 'ppe', 'Psat3g001160' => 'psa', 'Psat6g181880' => 'psa', 'Psat7g233720' => 'psa', 'PSO063G7587' => 'pso', 'PSO339G2145' => 'pso', 'PSO339G3369' => 'pso', 'PSO478G2747' => 'pso', 'PSO513G0140' => 'pso', 'PSO782G1614' => 'pso', 'PSO782G4889' => 'pso', 'PSO782G5485' => 'pso', 'PSO801G0241' => 'pso', 'QL07p048854' => 'qlo', 'QL08p046745' => 'qlo', 'QL08p052606' => 'qlo', 'QL08p053414' => 'qlo', 'QL08p054868' => 'qlo', 'RcHm_v2.0_Chr1g0350251' => 'rch', 'RcHm_v2.0_Chr1g0360851' => 'rch', 'RcHm_v2.0_Chr1g0362791' => 'rch', 'RcHm_v2.0_Chr3g0466281' => 'rch', 'RcHm_v2.0_Chr7g0201481' => 'rch', 'Rhsim01G0148600' => 'rsi', 'Rhsim05G0194400' => 'rsi', 'Rhsim07G0000700' => 'rsi', 'Rhsim07G0000800' => 'rsi', 'Rhsim07G0027900' => 'rsi', 'Rhsim09G0149500' => 'rsi', 'RhsimUnG0186900' => 'rsi', 'Sabra01G0089900' => 'sbr', 'Sabra02G0114700' => 'sbr', 'Sabra02G0116300' => 'sbr', 'Sabra03G0080100' => 'sbr', 'Sabra08G0024300' => 'sbr', 'Sabra10G0174300' => 'sbr', 'Sabra14G0048900' => 'sbr', 'Sabra14G0076500' => 'sbr', 'SalBow5G2513' => 'sbo', 'Sc01g0002300' => 'sci', 'Sc01g0004450' => 'sci', 'Sc06g0001680' => 'sci', 'Sc23g0003580' => 'sci', 'Sed0000913' => 'sed', 'Sed0001655' => 'sed', 'Sed0007745' => 'sed', 'Sed0010951' => 'sed', 'Sed0017599' => 'sed', 'Sed0021405' => 'sed', 'Sed0022810' => 'sed', 'SEGI_07099' => 'sgi', 'SEGI_11931' => 'sgi', 'SEGI_13187' => 'sgi', 'SEGI_29958' => 'sgi', 'SEGI_36351' => 'sgi', 'SGA_v2.0_scaffold126G33770' => 'sas', 'SGA_v2.0_scaffold153G37003' => 'sas', 'SGA_v2.0_scaffold2G01359' => 'sas', 'SGA_v2.0_scaffold5G03064' => 'sas', 'SGA_v2.0_scaffold95G28903' => 'sas', 'SHI12701' => 'shi', 'SHI26410' => 'shi', 'SHI38997' => 'shi', 'SHI53759' => 'shi', 'SHI53886' => 'shi', 'SHI54714' => 'shi', 'SMO011G0041' => 'smo', 'SMO146G0251' => 'smo', 'SMO160G0004' => 'smo', 'SMO174G0057' => 'smo', 'SMO244G0089' => 'smo', 'SMO296G0011' => 'smo', 'Solyc01g091280.3' => 'sly', 'Solyc05g047610.3' => 'sly', 'Solyc05g047640.3' => 'sly', 'Solyc05g055630.3' => 'sly', 'Solyc10g018160.2' => 'sly', 'Solyc10g084820.2' => 'sly', 'Solyc10g086565.2' => 'sly', 'Sopen01g037030' => 'spe', 'Sopen05g027920' => 'spe', 'Sopen05g034070' => 'spe', 'Sopen10g007260' => 'spe', 'Sopen10g034260' => 'spe', 'Sopen10g035950' => 'spe', 'Sp3g07710' => 'spa', 'Sp4g27420' => 'spa', 'Sp5g02450' => 'spa', 'Sp6g01280' => 'spa', 'Sp6g38480' => 'spa', 'Sp7g20780' => 'spa', 'TAR374G1413' => 'tar', 'TAR623G1777' => 'tar', 'TAR629G2370' => 'tar', 'TAR633G1759' => 'tar', 'TAR636G3387' => 'tar', 'THA.LOC104802447' => 'tha', 'THA.LOC104813916' => 'tha', 'THA.LOC104816423' => 'tha', 'THA.LOC104817246' => 'tha', 'THA.LOC104825895' => 'tha', 'Thecc.01G335200' => 'tca', 'Thecc.01G377400' => 'tca', 'Thecc.03G262200' => 'tca', 'Thecc.05G036800' => 'tca', 'Thecc.10G080500' => 'tca', 'Thecc.10G080800' => 'tca', 'Thhalv10001560m.g' => 'esa', 'Thhalv10006120m.g' => 'esa', 'Thhalv10014375m.g' => 'esa', 'Thhalv10021264m.g' => 'esa', 'Thhalv10028856m.g' => 'esa', 'TPR.G1914' => 'tpr', 'TPR.G4757' => 'tpr', 'TPR.G5595' => 'tpr', 'TWI14G0952' => 'twi', 'TWI14G1307' => 'twi', 'TWI38G2143' => 'twi', 'TWI59G0826' => 'twi', 'TWI77G0527' => 'twi', 'TWI81G0150' => 'twi', 'unitig_21.g21018' => 'ugi', 'unitig_26.g9725' => 'ugi', 'unitig_744.g24653' => 'ugi', 'unitig_749.g13778' => 'ugi', 'unitig_899.g15035' => 'ugi', 'vmacro04296' => 'vma', 'vmacro04852' => 'vma', 'vmacro13404' => 'vma', 'vmacro20169' => 'vma', 'vmacro21014' => 'vma', 'VMungo0331G0237' => 'vmu', 'VMungo0331G0706' => 'vmu', 'VMungo0331G1361' => 'vmu', 'VMungo0331G1489' => 'vmu', 'VMungo0540G1037' => 'vmu', 'VMungo0720G2487' => 'vmu', 'VMungo0720G2721' => 'vmu', 'Zm00001eb086860' => 'zma', 'Zm00001eb104760' => 'zma', 'Zm00001eb148220' => 'zma', 'Zm00001eb259030' => 'zma', 'Zm00001eb289590' => 'zma', 'Zm00001eb420150' => 'zma' ) $gf_id = 'HOM05D000968' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000968' ) $data_identifier = 'HOM05D000968' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 19, 'bol' => (int) 9, 'bra' => (int) 12, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 5, 'ccan' => (int) 7, 'cde' => (int) 5, 'cfa' => (int) 8, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 4, 'dca' => (int) 5, 'din' => (int) 5, 'dzi' => (int) 12, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 25, 'fve' => (int) 5, 'gma' => (int) 9, 'ghi' => (int) 18, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 7, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 5, 'sun' => (int) 2, 'lal' => (int) 9, 'lja' => (int) 5, 'lonja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 9, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 2, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 3, 'stu' => (int) 6, 'pvu' => (int) 4, 'ptr' => (int) 8, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 3, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 1, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 5, 'sas' => (int) 5, 'shi' => (int) 6, 'smo' => (int) 6, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 3, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420150' $species_info = array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ) $local_species = 'ath' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000968', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p31690' => 'bna', 'A03p36040' => 'bna', 'A03p53730' => 'bna', 'A04p01410' => 'bna', 'A05p05420' => 'bna', 'A05p39630' => 'bna', 'A05p39640' => 'bna', 'A09p00970' => 'bna', 'A09p53060' => 'bna', 'A10p31890' => 'bna', 'Aa31LG10G15040' => 'aar', 'Aa31LG1G21090' => 'aar', 'Aa31LG1G26900' => 'aar', 'Aa31LG3G1820' => 'aar', 'Aa31LG5G1100' => 'aar', 'Aa31LG6G4740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2265' => 'aag', 'Actinidia07998' => 'ach', 'Actinidia11266' => 'ach', 'Actinidia12682' => 'ach', 'Actinidia26479' => 'ach', 'Actinidia31406' => 'ach', 'Actinidia32437' => 'ach', 'Actinidia38862' => 'ach', 'Ah.05g174230' => 'amhyb', 'Ah.05g179070' => 'amhyb', 'Ah.05g179090' => 'amhyb', 'Ah.12g059950' => 'amhyb', 'AL3G20480' => 'aly', 'AL4G44520' => 'aly', 'AL5G43110' => 'aly', 'AL6G13890' => 'aly', 'AL6G52620' => 'aly', 'AL7G30830' => 'aly', 'Aqoxy1G00899' => 'aox', 'Aqoxy5G04333' => 'aox', 'Aqoxy7G00641' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3IZ0NN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4EF6AW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W9P8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79GA3M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C43NQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFCU6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G95YVJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCHK29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LU1UG8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX91RN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGB4B1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8DA0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9H7JI' => 'arhy', 'AT3G09320' => 'ath', 'AT3G60800' => 'ath', 'AT4G00840' => 'ath', 'AT4G22750' => 'ath', 'AT5G04270' => 'ath', 'ATR0090G003' => 'atr', 'ATR0559G349' => 'atr', 'ATR0680G261' => 'atr', 'ATR0810G048' => 'atr', 'Atru.chr12.831' => 'acertr', 'Atru.chr5.303' => 'acertr', 'Atru.chr5.748' => 'acertr', 'Atru.chr8.1999' => 'acertr', 'Atru.chr9.1436' => 'acertr', 'AUR62004211' => 'cqu', 'AUR62004548' => 'cqu', 'AUR62013637' => 'cqu', 'AUR62022662' => 'cqu', 'AUR62025777' => 'cqu', 'AUR62042386' => 'cqu', 'BcaB01g02310' => 'bca', 'BcaB01g06062' => 'bca', 'BcaB02g08975' => 'bca', 'BcaB02g08980' => 'bca', 'BcaC01g04228' => 'bca', 'BcaC01g06830' => 'bca', 'BcaC02g10186' => 'bca', 'BcaC02g12214' => 'bca', 'BcaC04g24101' => 'bca', 'BcaC05g29520' => 'bca', 'BcaC05g29661' => 'bca', 'BcaC06g32130' => 'bca', 'BcaC06g32131' => 'bca', 'BcaC07g40601' => 'bca', 'BcaC07g42641' => 'bca', 'BcaNung01038' => 'bca', 'BcaNung01676' => 'bca', 'BcaNung02480' => 'bca', 'BcaNung07376' => 'bca', 'BolC3t16146H' => 'bol', 'BolC3t16637H' => 'bol', 'BolC4t22257H' => 'bol', 'BolC4t24728H' => 'bol', 'BolC5t34517H' => 'bol', 'BolC7t45703H' => 'bol', 'BolC8t51166H' => 'bol', 'BolC9t53038H' => 'bol', 'BolC9t60000H' => 'bol', 'BraA01t01345Z' => 'bra', 'BraA01t01346Z' => 'bra', 'BraA01t01348Z' => 'bra', 'BraA03t12347Z' => 'bra', 'BraA03t12775Z' => 'bra', 'BraA03t14439Z' => 'bra', 'BraA04t15860Z' => 'bra', 'BraA05t19511Z' => 'bra', 'BraA05t22746Z' => 'bra', 'BraA09t35767Z' => 'bra', 'BraA09t40732Z' => 'bra', 'BraA10t45233Z' => 'bra', 'C03p38720' => 'bna', 'C03p43680' => 'bna', 'C04p06350' => 'bna', 'C04p31800' => 'bna', 'C05p58680' => 'bna', 'C07p52110' => 'bna', 'C08p35760' => 'bna', 'C09p01050' => 'bna', 'C09p72600' => 'bna', 'CAN.G106.2' => 'can', 'CAN.G1482.1' => 'can', 'CAN.G324.12' => 'can', 'CAN.G388.20' => 'can', 'CAN.G412.7' => 'can', 'CAN.G694.32' => 'can', 'CAN.G92.12' => 'can', 'CANSAT11G2353' => 'cansat', 'CANSAT21G1398' => 'cansat', 'CANSAT56G2456' => 'cansat', 'CANSAT56G3031' => 'cansat', 'CANSAT56G4539' => 'cansat', 'CARHR083680' => 'chi', 'CARHR171190' => 'chi', 'CARHR209010' => 'chi', 'CARHR229680' => 'chi', 'CARHR249490' => 'chi', 'Carub.0003s0844' => 'cru', 'Carub.0005s2755' => 'cru', 'Carub.0006s0322' => 'cru', 'Carub.0006s3586' => 'cru', 'Carub.0007s1855' => 'cru', 'Ca_07808_v3' => 'car', 'Ca_09535_v3' => 'car', 'Ca_10548_v3' => 'car', 'Ca_19913_v3' => 'car', 'Ca_19916_v3' => 'car', 'Ca_19975_v3' => 'car', 'CBR_g22876' => 'cbr', 'CBR_g22879' => 'cbr', 'CBR_g38491' => 'cbr', 'CBR_g54185' => 'cbr', 'CBR_g54190' => 'cbr', 'Cc02_g11020' => 'ccan', 'Cc02_g23920' => 'ccan', 'Cc02_g39860' => 'ccan', 'Cc02_g39870' => 'ccan', 'Cc03_g06760' => 'ccan', 'Cc06_g02450' => 'ccan', 'Cc09_g09450' => 'ccan', 'CDE02G1959' => 'cde', 'CDE04G0600' => 'cde', 'CDE07G1996' => 'cde', 'CDE07G2078' => 'cde', 'CDE11G0611' => 'cde', 'Cfa001683' => 'cfa', 'Cfa001734' => 'cfa', 'Cfa001737' => 'cfa', 'Cfa003751' => 'cfa', 'Cfa012019' => 'cfa', 'Cfa017353' => 'cfa', 'Cfa017732' => 'cfa', 'Cfa022464' => 'cfa', 'Ciclev10012400m.g' => 'ccl', 'Ciclev10021242m.g' => 'ccl', 'Ciclev10021302m.g' => 'ccl', 'Ciclev10021463m.g' => 'ccl', 'Ciclev10032359m.g' => 'ccl', 'CiPaw.01G081000' => 'cil', 'CiPaw.01G262500' => 'cil', 'CiPaw.01G269800' => 'cil', 'CiPaw.02G168400' => 'cil', 'CiPaw.05G119500' => 'cil', 'CiPaw.11G147300' => 'cil', 'ClCG01G003630' => 'cla', 'ClCG05G000510' => 'cla', 'ClCG05G002300' => 'cla', 'ClCG08G007650' => 'cla', 'ClCG10G021250' => 'cla', 'COL.COLO4_06218' => 'col', 'COL.COLO4_12538' => 'col', 'COL.COLO4_14775' => 'col', 'COL.COLO4_23875' => 'col', 'Cpa.g.sc141.16' => 'cpa', 'Cpa.g.sc169.16' => 'cpa', 'Cpa.g.sc244.4' => 'cpa', 'Cpa.g.sc244.5' => 'cpa', 'Cpa.g.sc29.87' => 'cpa', 'Cpa.g.sc53.115' => 'cpa', 'Cre03.g207502' => 'cre', 'Cre06.g277000' => 'cre', 'Cre09.g394050' => 'cre', 'CsaV3_3G007680' => 'csa', 'CsaV3_3G009710' => 'csa', 'CsaV3_3G034790' => 'csa', 'CsaV3_5G003750' => 'csa', 'CsaV3_6G036620' => 'csa', 'CSS0002288' => 'camsi', 'CSS0011250' => 'camsi', 'CSS0021619' => 'camsi', 'CSS0046701' => 'camsi', 'DCAR_006420' => 'dca', 'DCAR_006865' => 'dca', 'DCAR_008558' => 'dca', 'DCAR_028754' => 'dca', 'DCAR_028755' => 'dca', 'Dinv31218' => 'din', 'Dinv32371' => 'din', 'Dinv34250' => 'din', 'Dinv37156' => 'din', 'Dinv43704' => 'din', 'Duzib093G1811' => 'dzi', 'Duzib106G1622' => 'dzi', 'Duzib114G0504' => 'dzi', 'Duzib128G0338' => 'dzi', 'Duzib128G1577' => 'dzi', 'Duzib133G0104' => 'dzi', 'Duzib133G1080' => 'dzi', 'Duzib138G0324' => 'dzi', 'Duzib138G0394' => 'dzi', 'Duzib205G0122' => 'dzi', 'Duzib268G1020' => 'dzi', 'Duzib268G1359' => 'dzi', 'ECA232G3929' => 'eca', 'ECA236G2210' => 'eca', 'ECA236G2287' => 'eca', 'ECA240G4568' => 'eca', 'ECA247G0894' => 'eca', 'EL10Ac1g00200' => 'bvu', 'EL10Ac1g00886' => 'bvu', 'EL10As1g23091' => 'bvu', 'EL10As1g23092' => 'bvu', 'Eucgr.A01284' => 'egr', 'Eucgr.A01285' => 'egr', 'Eucgr.D02456' => 'egr', 'Eucgr.E00018' => 'egr', 'Eucgr.E01439' => 'egr', 'Eucgr.G02859' => 'egr', 'FAN01G0168' => 'fan', 'FAN01G0453' => 'fan', 'FAN01G2761' => 'fan', 'FAN02G1239' => 'fan', 'FAN03G0645' => 'fan', 'FAN03G2707' => 'fan', 'FAN03G2978' => 'fan', 'FAN04G0227' => 'fan', 'FAN06G0091' => 'fan', 'FAN06G1418' => 'fan', 'FAN06G1512' => 'fan', 'FAN06G1986' => 'fan', 'FAN06G2905' => 'fan', 'FAN06G4325' => 'fan', 'FAN08G0033' => 'fan', 'FAN09G0642' => 'fan', 'FAN10G1763' => 'fan', 'FAN10G2026' => 'fan', 'FAN10G2513' => 'fan', 'FAN10G3402' => 'fan', 'FAN10G3564' => 'fan', 'FAN10G3987' => 'fan', 'FAN13G1490' => 'fan', 'FAN14G5857' => 'fan', 'FAN18G1188' => 'fan', 'FvH4_5g00750' => 'fve', 'FvH4_6g13410' => 'fve', 'FvH4_7g11740' => 'fve', 'FvH4_7g17410' => 'fve', 'FvH4_7g18860' => 'fve', 'Glyma.01G099100' => 'gma', 'Glyma.01G142300' => 'gma', 'Glyma.03G025500' => 'gma', 'Glyma.03G069700' => 'gma', 'Glyma.03G260000' => 'gma', 'Glyma.09G269800' => 'gma', 'Glyma.10G208700' => 'gma', 'Glyma.18G220400' => 'gma', 'Glyma.20G182000' => 'gma', 'Gohir.A01G221726' => 'ghi', 'Gohir.A07G134600' => 'ghi', 'Gohir.A07G146000' => 'ghi', 'Gohir.A08G173900' => 'ghi', 'Gohir.A09G194900' => 'ghi', 'Gohir.A10G204100' => 'ghi', 'Gohir.A11G080600' => 'ghi', 'Gohir.A11G327500' => 'ghi', 'Gohir.A12G101800' => 'ghi', 'Gohir.D01G211200' => 'ghi', 'Gohir.D07G139200' => 'ghi', 'Gohir.D07G152100' => 'ghi', 'Gohir.D08G192600' => 'ghi', 'Gohir.D09G189200' => 'ghi', 'Gohir.D10G212000' => 'ghi', 'Gohir.D11G085200' => 'ghi', 'Gohir.D11G346400' => 'ghi', 'Gohir.D12G104800' => 'ghi', 'Gorai.001G151300' => 'gra', 'Gorai.001G174100' => 'gra', 'Gorai.002G257000' => 'gra', 'Gorai.004G202600' => 'gra', 'Gorai.007G090900' => 'gra', 'Gorai.007G376700' => 'gra', 'Gorai.008G114100' => 'gra', 'Gorai.011G237900' => 'gra', 'GSVIVG01005450001' => 'vvi', 'GSVIVG01016232001' => 'vvi', 'GSVIVG01026157001' => 'vvi', 'GSVIVG01027419001' => 'vvi', 'GSVIVG01027631001' => 'vvi', 'GSVIVG01034143001' => 'vvi', 'HanXRQChr03g0093921' => 'han', 'HanXRQChr04g0120001' => 'han', 'HanXRQChr04g0122561' => 'han', 'HanXRQChr09g0246851' => 'han', 'HanXRQChr10g0293311' => 'han', 'HanXRQChr13g0425231' => 'han', 'HanXRQChr16g0532571' => 'han', 'Haze_09050' => 'cav', 'Haze_15715' => 'cav', 'Haze_15716' => 'cav', 'Haze_16803' => 'cav', 'Haze_16850' => 'cav', 'Hma1.2p1_0301F.1_g118655' => 'hma', 'Hma1.2p1_0309F.1_g120590' => 'hma', 'Hma1.2p1_0936F.1_g238900' => 'hma', 'Hma1.2p1_3552F.1_g336740' => 'hma', 'HPP92_003520' => 'vpl', 'HPP92_006628' => 'vpl', 'HPP92_006645' => 'vpl', 'HPP92_014669' => 'vpl', 'HPP92_015077' => 'vpl', 'Hund16742' => 'sun', 'Hund17022' => 'sun', 'Lalb_Chr02g0152131' => 'lal', 'Lalb_Chr05g0225371' => 'lal', 'Lalb_Chr07g0189841' => 'lal', 'Lalb_Chr07g0192961' => 'lal', 'Lalb_Chr12g0208221' => 'lal', 'Lalb_Chr13g0291211' => 'lal', 'Lalb_Chr13g0291781' => 'lal', 'Lalb_Chr18g0044651' => 'lal', 'Lalb_Chr21g0313731' => 'lal', 'Lj1g0022533' => 'lja', 'Lj2A18T50' => 'lonja', 'Lj2A92G93' => 'lonja', 'Lj3A965T73' => 'lonja', 'Lj3g0000673' => 'lja', 'Lj3g0002666' => 'lja', 'Lj4g0016985' => 'lja', 'Lj5g0003625' => 'lja', 'Lj7A529G36' => 'lonja', 'Lj9A569T49' => 'lonja', 'Lj9A604T63' => 'lonja', 'Lsat_1_v5_gn_3_132060' => 'lsa', 'Lsat_1_v5_gn_4_68941' => 'lsa', 'Lsat_1_v5_gn_5_95580' => 'lsa', 'Lsat_1_v5_gn_7_161' => 'lsa', 'Lsat_1_v5_gn_7_7041' => 'lsa', 'Lsat_1_v5_gn_9_33481' => 'lsa', 'Lsat_1_v5_gn_9_68260' => 'lsa', 'Manes.01G073100' => 'mes', 'Manes.01G266300' => 'mes', 'Manes.02G033300' => 'mes', 'Manes.05G017900' => 'mes', 'Manes.05G046100' => 'mes', 'Manes.08G080900' => 'mes', 'Manes.10G049400' => 'mes', 'Mapoly0009s0186' => 'mpo', 'Mapoly0036s0118' => 'mpo', 'Mapoly0101s0046' => 'mpo', 'MBI04_g30218_MAGBIO' => 'mbi', 'MBI04_g35564_MAGBIO' => 'mbi', 'MBI12_g34011_MAGBIO' => 'mbi', 'MBI14_g04655_MAGBIO' => 'mbi', 'MCO07G653' => 'mco', 'MCO10G173' => 'mco', 'MD01G1087100' => 'mdo', 'MD01G1104200' => 'mdo', 'MD02G1205100' => 'mdo', 'MD04G1079200' => 'mdo', 'MD04G1131400' => 'mdo', 'MD07G1121600' => 'mdo', 'MD07G1157300' => 'mdo', 'MD07G1171000' => 'mdo', 'MD12G1144500' => 'mdo', 'Medtr1g094610' => 'mtr', 'Medtr4g021795' => 'mtr', 'Medtr4g023760' => 'mtr', 'Medtr7g118050' => 'mtr', 'MELO3C005582.2' => 'cme', 'MELO3C005989.2' => 'cme', 'MELO3C006192.2' => 'cme', 'MELO3C009248.2' => 'cme', 'MELO3C019817.2' => 'cme', 'Migut.B01625' => 'egut', 'Migut.B01915' => 'egut', 'Migut.F01721' => 'egut', 'Migut.J00314' => 'egut', 'MSTRG.20742' => 'ama', 'MSTRG.8134' => 'ama', 'Nitab4.5_0000096g0010' => 'nta', 'Nitab4.5_0000202g0030' => 'nta', 'Nitab4.5_0000216g0370' => 'nta', 'Nitab4.5_0000457g0230' => 'nta', 'Nitab4.5_0001702g0170' => 'nta', 'Nitab4.5_0003607g0010' => 'nta', 'Nitab4.5_0004917g0020' => 'nta', 'Nitab4.5_0007059g0010' => 'nta', 'Nitab4.5_0007184g0010' => 'nta', 'Nitab4.5_0007346g0020' => 'nta', 'Nn1g00410' => 'nnu', 'Nn1g01252' => 'nnu', 'Nn2g11168' => 'nnu', 'Nn2g13403' => 'nnu', 'Nn2g13760' => 'nnu', 'Nn4g26380' => 'nnu', 'Oeu000806.2' => 'oeu', 'Oeu005788.1' => 'oeu', 'Oeu006900.3' => 'oeu', 'Oeu007797.1' => 'oeu', 'Oeu011932.1' => 'oeu', 'Oeu022739.1' => 'oeu', 'Oeu037918.1' => 'oeu', 'Oeu055490.2' => 'oeu', 'Os01g0844400' => 'osa', 'Os02g0819100' => 'osa', 'Os03g0804300' => 'osa', 'Os05g0458000' => 'osa', 'Os07g0467800' => 'osa', 'Os12g0602200' => 'osa', 'Peaxi162Scf00013g03444' => 'pax', 'Peaxi162Scf00094g01120' => 'pax', 'Peaxi162Scf00191g01211' => 'pax', 'Peaxi162Scf00238g01110' => 'pax', 'Peaxi162Scf00330g00719' => 'pax', 'Peaxi162Scf00627g00018' => 'pax', 'PGR031G2686' => 'pgr', 'PGR042G0809' => 'pgr', 'PGR142G0193' => 'pgr', 'PGSC0003DMG400011066' => 'stu', 'PGSC0003DMG400012041' => 'stu', 'PGSC0003DMG400013678' => 'stu', 'PGSC0003DMG400023477' => 'stu', 'PGSC0003DMG400025956' => 'stu', 'PGSC0003DMG401019151' => 'stu', 'Phvul.006G116400' => 'pvu', 'Phvul.007G097300' => 'pvu', 'Phvul.010G015000' => 'pvu', 'Phvul.010G083900' => 'pvu', 'Potri.001G117100' => 'ptr', 'Potri.002G147300' => 'ptr', 'Potri.003G115600' => 'ptr', 'Potri.006G087400' => 'ptr', 'Potri.010G226100' => 'ptr', 'Potri.014G069200' => 'ptr', 'Potri.014G104000' => 'ptr', 'Potri.016G100200' => 'ptr', 'Pp3c10_20450' => 'ppa', 'Pp3c1_42400' => 'ppa', 'Pp3c3_24390' => 'ppa', 'Pp3c3_2860' => 'ppa', 'PRCOL_00003193' => 'pco', 'Prupe.2G144500' => 'ppe', 'Prupe.2G195700' => 'ppe', 'Prupe.2G209800' => 'ppe', 'Prupe.5G080000' => 'ppe', 'Prupe.6G257900' => 'ppe', 'Psat3g001160' => 'psa', 'Psat6g181880' => 'psa', 'Psat7g233720' => 'psa', 'PSO063G7587' => 'pso', 'PSO339G2145' => 'pso', 'PSO339G3369' => 'pso', 'PSO478G2747' => 'pso', 'PSO513G0140' => 'pso', 'PSO782G1614' => 'pso', 'PSO782G4889' => 'pso', 'PSO782G5485' => 'pso', 'PSO801G0241' => 'pso', 'QL07p048854' => 'qlo', 'QL08p046745' => 'qlo', 'QL08p052606' => 'qlo', 'QL08p053414' => 'qlo', 'QL08p054868' => 'qlo', 'RcHm_v2.0_Chr1g0350251' => 'rch', 'RcHm_v2.0_Chr1g0360851' => 'rch', 'RcHm_v2.0_Chr1g0362791' => 'rch', 'RcHm_v2.0_Chr3g0466281' => 'rch', 'RcHm_v2.0_Chr7g0201481' => 'rch', 'Rhsim01G0148600' => 'rsi', 'Rhsim05G0194400' => 'rsi', 'Rhsim07G0000700' => 'rsi', 'Rhsim07G0000800' => 'rsi', 'Rhsim07G0027900' => 'rsi', 'Rhsim09G0149500' => 'rsi', 'RhsimUnG0186900' => 'rsi', 'Sabra01G0089900' => 'sbr', 'Sabra02G0114700' => 'sbr', 'Sabra02G0116300' => 'sbr', 'Sabra03G0080100' => 'sbr', 'Sabra08G0024300' => 'sbr', 'Sabra10G0174300' => 'sbr', 'Sabra14G0048900' => 'sbr', 'Sabra14G0076500' => 'sbr', 'SalBow5G2513' => 'sbo', 'Sc01g0002300' => 'sci', 'Sc01g0004450' => 'sci', 'Sc06g0001680' => 'sci', 'Sc23g0003580' => 'sci', 'Sed0000913' => 'sed', 'Sed0001655' => 'sed', 'Sed0007745' => 'sed', 'Sed0010951' => 'sed', 'Sed0017599' => 'sed', 'Sed0021405' => 'sed', 'Sed0022810' => 'sed', 'SEGI_07099' => 'sgi', 'SEGI_11931' => 'sgi', 'SEGI_13187' => 'sgi', 'SEGI_29958' => 'sgi', 'SEGI_36351' => 'sgi', 'SGA_v2.0_scaffold126G33770' => 'sas', 'SGA_v2.0_scaffold153G37003' => 'sas', 'SGA_v2.0_scaffold2G01359' => 'sas', 'SGA_v2.0_scaffold5G03064' => 'sas', 'SGA_v2.0_scaffold95G28903' => 'sas', 'SHI12701' => 'shi', 'SHI26410' => 'shi', 'SHI38997' => 'shi', 'SHI53759' => 'shi', 'SHI53886' => 'shi', 'SHI54714' => 'shi', 'SMO011G0041' => 'smo', 'SMO146G0251' => 'smo', 'SMO160G0004' => 'smo', 'SMO174G0057' => 'smo', 'SMO244G0089' => 'smo', 'SMO296G0011' => 'smo', 'Solyc01g091280.3' => 'sly', 'Solyc05g047610.3' => 'sly', 'Solyc05g047640.3' => 'sly', 'Solyc05g055630.3' => 'sly', 'Solyc10g018160.2' => 'sly', 'Solyc10g084820.2' => 'sly', 'Solyc10g086565.2' => 'sly', 'Sopen01g037030' => 'spe', 'Sopen05g027920' => 'spe', 'Sopen05g034070' => 'spe', 'Sopen10g007260' => 'spe', 'Sopen10g034260' => 'spe', 'Sopen10g035950' => 'spe', 'Sp3g07710' => 'spa', 'Sp4g27420' => 'spa', 'Sp5g02450' => 'spa', 'Sp6g01280' => 'spa', 'Sp6g38480' => 'spa', 'Sp7g20780' => 'spa', 'TAR374G1413' => 'tar', 'TAR623G1777' => 'tar', 'TAR629G2370' => 'tar', 'TAR633G1759' => 'tar', 'TAR636G3387' => 'tar', 'THA.LOC104802447' => 'tha', 'THA.LOC104813916' => 'tha', 'THA.LOC104816423' => 'tha', 'THA.LOC104817246' => 'tha', 'THA.LOC104825895' => 'tha', 'Thecc.01G335200' => 'tca', 'Thecc.01G377400' => 'tca', 'Thecc.03G262200' => 'tca', 'Thecc.05G036800' => 'tca', 'Thecc.10G080500' => 'tca', 'Thecc.10G080800' => 'tca', 'Thhalv10001560m.g' => 'esa', 'Thhalv10006120m.g' => 'esa', 'Thhalv10014375m.g' => 'esa', 'Thhalv10021264m.g' => 'esa', 'Thhalv10028856m.g' => 'esa', 'TPR.G1914' => 'tpr', 'TPR.G4757' => 'tpr', 'TPR.G5595' => 'tpr', 'TWI14G0952' => 'twi', 'TWI14G1307' => 'twi', 'TWI38G2143' => 'twi', 'TWI59G0826' => 'twi', 'TWI77G0527' => 'twi', 'TWI81G0150' => 'twi', 'unitig_21.g21018' => 'ugi', 'unitig_26.g9725' => 'ugi', 'unitig_744.g24653' => 'ugi', 'unitig_749.g13778' => 'ugi', 'unitig_899.g15035' => 'ugi', 'vmacro04296' => 'vma', 'vmacro04852' => 'vma', 'vmacro13404' => 'vma', 'vmacro20169' => 'vma', 'vmacro21014' => 'vma', 'VMungo0331G0237' => 'vmu', 'VMungo0331G0706' => 'vmu', 'VMungo0331G1361' => 'vmu', 'VMungo0331G1489' => 'vmu', 'VMungo0540G1037' => 'vmu', 'VMungo0720G2487' => 'vmu', 'VMungo0720G2721' => 'vmu', 'Zm00001eb086860' => 'zma', 'Zm00001eb104760' => 'zma', 'Zm00001eb148220' => 'zma', 'Zm00001eb259030' => 'zma', 'Zm00001eb289590' => 'zma', 'Zm00001eb420150' => 'zma' ), 'gf_id' => 'HOM05D000968', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000968' ), 'data_identifier' => 'HOM05D000968', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000968', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p31690' => 'bna', 'A03p36040' => 'bna', 'A03p53730' => 'bna', 'A04p01410' => 'bna', 'A05p05420' => 'bna', 'A05p39630' => 'bna', 'A05p39640' => 'bna', 'A09p00970' => 'bna', 'A09p53060' => 'bna', 'A10p31890' => 'bna', 'Aa31LG10G15040' => 'aar', 'Aa31LG1G21090' => 'aar', 'Aa31LG1G26900' => 'aar', 'Aa31LG3G1820' => 'aar', 'Aa31LG5G1100' => 'aar', 'Aa31LG6G4740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2265' => 'aag', 'Actinidia07998' => 'ach', 'Actinidia11266' => 'ach', 'Actinidia12682' => 'ach', 'Actinidia26479' => 'ach', 'Actinidia31406' => 'ach', 'Actinidia32437' => 'ach', 'Actinidia38862' => 'ach', 'Ah.05g174230' => 'amhyb', 'Ah.05g179070' => 'amhyb', 'Ah.05g179090' => 'amhyb', 'Ah.12g059950' => 'amhyb', 'AL3G20480' => 'aly', 'AL4G44520' => 'aly', 'AL5G43110' => 'aly', 'AL6G13890' => 'aly', 'AL6G52620' => 'aly', 'AL7G30830' => 'aly', 'Aqoxy1G00899' => 'aox', 'Aqoxy5G04333' => 'aox', 'Aqoxy7G00641' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3IZ0NN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4EF6AW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W9P8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79GA3M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C43NQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFCU6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G95YVJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCHK29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LU1UG8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX91RN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGB4B1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8DA0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9H7JI' => 'arhy', 'AT3G09320' => 'ath', 'AT3G60800' => 'ath', 'AT4G00840' => 'ath', 'AT4G22750' => 'ath', 'AT5G04270' => 'ath', 'ATR0090G003' => 'atr', 'ATR0559G349' => 'atr', 'ATR0680G261' => 'atr', 'ATR0810G048' => 'atr', 'Atru.chr12.831' => 'acertr', 'Atru.chr5.303' => 'acertr', 'Atru.chr5.748' => 'acertr', 'Atru.chr8.1999' => 'acertr', 'Atru.chr9.1436' => 'acertr', 'AUR62004211' => 'cqu', 'AUR62004548' => 'cqu', 'AUR62013637' => 'cqu', 'AUR62022662' => 'cqu', 'AUR62025777' => 'cqu', 'AUR62042386' => 'cqu', 'BcaB01g02310' => 'bca', 'BcaB01g06062' => 'bca', 'BcaB02g08975' => 'bca', 'BcaB02g08980' => 'bca', 'BcaC01g04228' => 'bca', 'BcaC01g06830' => 'bca', 'BcaC02g10186' => 'bca', 'BcaC02g12214' => 'bca', 'BcaC04g24101' => 'bca', 'BcaC05g29520' => 'bca', 'BcaC05g29661' => 'bca', 'BcaC06g32130' => 'bca', 'BcaC06g32131' => 'bca', 'BcaC07g40601' => 'bca', 'BcaC07g42641' => 'bca', 'BcaNung01038' => 'bca', 'BcaNung01676' => 'bca', 'BcaNung02480' => 'bca', 'BcaNung07376' => 'bca', 'BolC3t16146H' => 'bol', 'BolC3t16637H' => 'bol', 'BolC4t22257H' => 'bol', 'BolC4t24728H' => 'bol', 'BolC5t34517H' => 'bol', 'BolC7t45703H' => 'bol', 'BolC8t51166H' => 'bol', 'BolC9t53038H' => 'bol', 'BolC9t60000H' => 'bol', 'BraA01t01345Z' => 'bra', 'BraA01t01346Z' => 'bra', 'BraA01t01348Z' => 'bra', 'BraA03t12347Z' => 'bra', 'BraA03t12775Z' => 'bra', 'BraA03t14439Z' => 'bra', 'BraA04t15860Z' => 'bra', 'BraA05t19511Z' => 'bra', 'BraA05t22746Z' => 'bra', 'BraA09t35767Z' => 'bra', 'BraA09t40732Z' => 'bra', 'BraA10t45233Z' => 'bra', 'C03p38720' => 'bna', 'C03p43680' => 'bna', 'C04p06350' => 'bna', 'C04p31800' => 'bna', 'C05p58680' => 'bna', 'C07p52110' => 'bna', 'C08p35760' => 'bna', 'C09p01050' => 'bna', 'C09p72600' => 'bna', 'CAN.G106.2' => 'can', 'CAN.G1482.1' => 'can', 'CAN.G324.12' => 'can', 'CAN.G388.20' => 'can', 'CAN.G412.7' => 'can', 'CAN.G694.32' => 'can', 'CAN.G92.12' => 'can', 'CANSAT11G2353' => 'cansat', 'CANSAT21G1398' => 'cansat', 'CANSAT56G2456' => 'cansat', 'CANSAT56G3031' => 'cansat', 'CANSAT56G4539' => 'cansat', 'CARHR083680' => 'chi', 'CARHR171190' => 'chi', 'CARHR209010' => 'chi', 'CARHR229680' => 'chi', 'CARHR249490' => 'chi', 'Carub.0003s0844' => 'cru', 'Carub.0005s2755' => 'cru', 'Carub.0006s0322' => 'cru', 'Carub.0006s3586' => 'cru', 'Carub.0007s1855' => 'cru', 'Ca_07808_v3' => 'car', 'Ca_09535_v3' => 'car', 'Ca_10548_v3' => 'car', 'Ca_19913_v3' => 'car', 'Ca_19916_v3' => 'car', 'Ca_19975_v3' => 'car', 'CBR_g22876' => 'cbr', 'CBR_g22879' => 'cbr', 'CBR_g38491' => 'cbr', 'CBR_g54185' => 'cbr', 'CBR_g54190' => 'cbr', 'Cc02_g11020' => 'ccan', 'Cc02_g23920' => 'ccan', 'Cc02_g39860' => 'ccan', 'Cc02_g39870' => 'ccan', 'Cc03_g06760' => 'ccan', 'Cc06_g02450' => 'ccan', 'Cc09_g09450' => 'ccan', 'CDE02G1959' => 'cde', 'CDE04G0600' => 'cde', 'CDE07G1996' => 'cde', 'CDE07G2078' => 'cde', 'CDE11G0611' => 'cde', 'Cfa001683' => 'cfa', 'Cfa001734' => 'cfa', 'Cfa001737' => 'cfa', 'Cfa003751' => 'cfa', 'Cfa012019' => 'cfa', 'Cfa017353' => 'cfa', 'Cfa017732' => 'cfa', 'Cfa022464' => 'cfa', 'Ciclev10012400m.g' => 'ccl', 'Ciclev10021242m.g' => 'ccl', 'Ciclev10021302m.g' => 'ccl', 'Ciclev10021463m.g' => 'ccl', 'Ciclev10032359m.g' => 'ccl', 'CiPaw.01G081000' => 'cil', 'CiPaw.01G262500' => 'cil', 'CiPaw.01G269800' => 'cil', 'CiPaw.02G168400' => 'cil', 'CiPaw.05G119500' => 'cil', 'CiPaw.11G147300' => 'cil', 'ClCG01G003630' => 'cla', 'ClCG05G000510' => 'cla', 'ClCG05G002300' => 'cla', 'ClCG08G007650' => 'cla', 'ClCG10G021250' => 'cla', 'COL.COLO4_06218' => 'col', 'COL.COLO4_12538' => 'col', 'COL.COLO4_14775' => 'col', 'COL.COLO4_23875' => 'col', 'Cpa.g.sc141.16' => 'cpa', 'Cpa.g.sc169.16' => 'cpa', 'Cpa.g.sc244.4' => 'cpa', 'Cpa.g.sc244.5' => 'cpa', 'Cpa.g.sc29.87' => 'cpa', 'Cpa.g.sc53.115' => 'cpa', 'Cre03.g207502' => 'cre', 'Cre06.g277000' => 'cre', 'Cre09.g394050' => 'cre', 'CsaV3_3G007680' => 'csa', 'CsaV3_3G009710' => 'csa', 'CsaV3_3G034790' => 'csa', 'CsaV3_5G003750' => 'csa', 'CsaV3_6G036620' => 'csa', 'CSS0002288' => 'camsi', 'CSS0011250' => 'camsi', 'CSS0021619' => 'camsi', 'CSS0046701' => 'camsi', 'DCAR_006420' => 'dca', 'DCAR_006865' => 'dca', 'DCAR_008558' => 'dca', 'DCAR_028754' => 'dca', 'DCAR_028755' => 'dca', 'Dinv31218' => 'din', 'Dinv32371' => 'din', 'Dinv34250' => 'din', 'Dinv37156' => 'din', 'Dinv43704' => 'din', 'Duzib093G1811' => 'dzi', 'Duzib106G1622' => 'dzi', 'Duzib114G0504' => 'dzi', 'Duzib128G0338' => 'dzi', 'Duzib128G1577' => 'dzi', 'Duzib133G0104' => 'dzi', 'Duzib133G1080' => 'dzi', 'Duzib138G0324' => 'dzi', 'Duzib138G0394' => 'dzi', 'Duzib205G0122' => 'dzi', 'Duzib268G1020' => 'dzi', 'Duzib268G1359' => 'dzi', 'ECA232G3929' => 'eca', 'ECA236G2210' => 'eca', 'ECA236G2287' => 'eca', 'ECA240G4568' => 'eca', 'ECA247G0894' => 'eca', 'EL10Ac1g00200' => 'bvu', 'EL10Ac1g00886' => 'bvu', 'EL10As1g23091' => 'bvu', 'EL10As1g23092' => 'bvu', 'Eucgr.A01284' => 'egr', 'Eucgr.A01285' => 'egr', 'Eucgr.D02456' => 'egr', 'Eucgr.E00018' => 'egr', 'Eucgr.E01439' => 'egr', 'Eucgr.G02859' => 'egr', 'FAN01G0168' => 'fan', 'FAN01G0453' => 'fan', 'FAN01G2761' => 'fan', 'FAN02G1239' => 'fan', 'FAN03G0645' => 'fan', 'FAN03G2707' => 'fan', 'FAN03G2978' => 'fan', 'FAN04G0227' => 'fan', 'FAN06G0091' => 'fan', 'FAN06G1418' => 'fan', 'FAN06G1512' => 'fan', 'FAN06G1986' => 'fan', 'FAN06G2905' => 'fan', 'FAN06G4325' => 'fan', 'FAN08G0033' => 'fan', 'FAN09G0642' => 'fan', 'FAN10G1763' => 'fan', 'FAN10G2026' => 'fan', 'FAN10G2513' => 'fan', 'FAN10G3402' => 'fan', 'FAN10G3564' => 'fan', 'FAN10G3987' => 'fan', 'FAN13G1490' => 'fan', 'FAN14G5857' => 'fan', 'FAN18G1188' => 'fan', 'FvH4_5g00750' => 'fve', 'FvH4_6g13410' => 'fve', 'FvH4_7g11740' => 'fve', 'FvH4_7g17410' => 'fve', 'FvH4_7g18860' => 'fve', 'Glyma.01G099100' => 'gma', 'Glyma.01G142300' => 'gma', 'Glyma.03G025500' => 'gma', 'Glyma.03G069700' => 'gma', 'Glyma.03G260000' => 'gma', 'Glyma.09G269800' => 'gma', 'Glyma.10G208700' => 'gma', 'Glyma.18G220400' => 'gma', 'Glyma.20G182000' => 'gma', 'Gohir.A01G221726' => 'ghi', 'Gohir.A07G134600' => 'ghi', 'Gohir.A07G146000' => 'ghi', 'Gohir.A08G173900' => 'ghi', 'Gohir.A09G194900' => 'ghi', 'Gohir.A10G204100' => 'ghi', 'Gohir.A11G080600' => 'ghi', 'Gohir.A11G327500' => 'ghi', 'Gohir.A12G101800' => 'ghi', 'Gohir.D01G211200' => 'ghi', 'Gohir.D07G139200' => 'ghi', 'Gohir.D07G152100' => 'ghi', 'Gohir.D08G192600' => 'ghi', 'Gohir.D09G189200' => 'ghi', 'Gohir.D10G212000' => 'ghi', 'Gohir.D11G085200' => 'ghi', 'Gohir.D11G346400' => 'ghi', 'Gohir.D12G104800' => 'ghi', 'Gorai.001G151300' => 'gra', 'Gorai.001G174100' => 'gra', 'Gorai.002G257000' => 'gra', 'Gorai.004G202600' => 'gra', 'Gorai.007G090900' => 'gra', 'Gorai.007G376700' => 'gra', 'Gorai.008G114100' => 'gra', 'Gorai.011G237900' => 'gra', 'GSVIVG01005450001' => 'vvi', 'GSVIVG01016232001' => 'vvi', 'GSVIVG01026157001' => 'vvi', 'GSVIVG01027419001' => 'vvi', 'GSVIVG01027631001' => 'vvi', 'GSVIVG01034143001' => 'vvi', 'HanXRQChr03g0093921' => 'han', 'HanXRQChr04g0120001' => 'han', 'HanXRQChr04g0122561' => 'han', 'HanXRQChr09g0246851' => 'han', 'HanXRQChr10g0293311' => 'han', 'HanXRQChr13g0425231' => 'han', 'HanXRQChr16g0532571' => 'han', 'Haze_09050' => 'cav', 'Haze_15715' => 'cav', 'Haze_15716' => 'cav', 'Haze_16803' => 'cav', 'Haze_16850' => 'cav', 'Hma1.2p1_0301F.1_g118655' => 'hma', 'Hma1.2p1_0309F.1_g120590' => 'hma', 'Hma1.2p1_0936F.1_g238900' => 'hma', 'Hma1.2p1_3552F.1_g336740' => 'hma', 'HPP92_003520' => 'vpl', 'HPP92_006628' => 'vpl', 'HPP92_006645' => 'vpl', 'HPP92_014669' => 'vpl', 'HPP92_015077' => 'vpl', 'Hund16742' => 'sun', 'Hund17022' => 'sun', 'Lalb_Chr02g0152131' => 'lal', 'Lalb_Chr05g0225371' => 'lal', 'Lalb_Chr07g0189841' => 'lal', 'Lalb_Chr07g0192961' => 'lal', 'Lalb_Chr12g0208221' => 'lal', 'Lalb_Chr13g0291211' => 'lal', 'Lalb_Chr13g0291781' => 'lal', 'Lalb_Chr18g0044651' => 'lal', 'Lalb_Chr21g0313731' => 'lal', 'Lj1g0022533' => 'lja', 'Lj2A18T50' => 'lonja', 'Lj2A92G93' => 'lonja', 'Lj3A965T73' => 'lonja', 'Lj3g0000673' => 'lja', 'Lj3g0002666' => 'lja', 'Lj4g0016985' => 'lja', 'Lj5g0003625' => 'lja', 'Lj7A529G36' => 'lonja', 'Lj9A569T49' => 'lonja', 'Lj9A604T63' => 'lonja', 'Lsat_1_v5_gn_3_132060' => 'lsa', 'Lsat_1_v5_gn_4_68941' => 'lsa', 'Lsat_1_v5_gn_5_95580' => 'lsa', 'Lsat_1_v5_gn_7_161' => 'lsa', 'Lsat_1_v5_gn_7_7041' => 'lsa', 'Lsat_1_v5_gn_9_33481' => 'lsa', 'Lsat_1_v5_gn_9_68260' => 'lsa', 'Manes.01G073100' => 'mes', 'Manes.01G266300' => 'mes', 'Manes.02G033300' => 'mes', 'Manes.05G017900' => 'mes', 'Manes.05G046100' => 'mes', 'Manes.08G080900' => 'mes', 'Manes.10G049400' => 'mes', 'Mapoly0009s0186' => 'mpo', 'Mapoly0036s0118' => 'mpo', 'Mapoly0101s0046' => 'mpo', 'MBI04_g30218_MAGBIO' => 'mbi', 'MBI04_g35564_MAGBIO' => 'mbi', 'MBI12_g34011_MAGBIO' => 'mbi', 'MBI14_g04655_MAGBIO' => 'mbi', 'MCO07G653' => 'mco', 'MCO10G173' => 'mco', 'MD01G1087100' => 'mdo', 'MD01G1104200' => 'mdo', 'MD02G1205100' => 'mdo', 'MD04G1079200' => 'mdo', 'MD04G1131400' => 'mdo', 'MD07G1121600' => 'mdo', 'MD07G1157300' => 'mdo', 'MD07G1171000' => 'mdo', 'MD12G1144500' => 'mdo', 'Medtr1g094610' => 'mtr', 'Medtr4g021795' => 'mtr', 'Medtr4g023760' => 'mtr', 'Medtr7g118050' => 'mtr', 'MELO3C005582.2' => 'cme', 'MELO3C005989.2' => 'cme', 'MELO3C006192.2' => 'cme', 'MELO3C009248.2' => 'cme', 'MELO3C019817.2' => 'cme', 'Migut.B01625' => 'egut', 'Migut.B01915' => 'egut', 'Migut.F01721' => 'egut', 'Migut.J00314' => 'egut', 'MSTRG.20742' => 'ama', 'MSTRG.8134' => 'ama', 'Nitab4.5_0000096g0010' => 'nta', 'Nitab4.5_0000202g0030' => 'nta', 'Nitab4.5_0000216g0370' => 'nta', 'Nitab4.5_0000457g0230' => 'nta', 'Nitab4.5_0001702g0170' => 'nta', 'Nitab4.5_0003607g0010' => 'nta', 'Nitab4.5_0004917g0020' => 'nta', 'Nitab4.5_0007059g0010' => 'nta', 'Nitab4.5_0007184g0010' => 'nta', 'Nitab4.5_0007346g0020' => 'nta', 'Nn1g00410' => 'nnu', 'Nn1g01252' => 'nnu', 'Nn2g11168' => 'nnu', 'Nn2g13403' => 'nnu', 'Nn2g13760' => 'nnu', 'Nn4g26380' => 'nnu', 'Oeu000806.2' => 'oeu', 'Oeu005788.1' => 'oeu', 'Oeu006900.3' => 'oeu', 'Oeu007797.1' => 'oeu', 'Oeu011932.1' => 'oeu', 'Oeu022739.1' => 'oeu', 'Oeu037918.1' => 'oeu', 'Oeu055490.2' => 'oeu', 'Os01g0844400' => 'osa', 'Os02g0819100' => 'osa', 'Os03g0804300' => 'osa', 'Os05g0458000' => 'osa', 'Os07g0467800' => 'osa', 'Os12g0602200' => 'osa', 'Peaxi162Scf00013g03444' => 'pax', 'Peaxi162Scf00094g01120' => 'pax', 'Peaxi162Scf00191g01211' => 'pax', 'Peaxi162Scf00238g01110' => 'pax', 'Peaxi162Scf00330g00719' => 'pax', 'Peaxi162Scf00627g00018' => 'pax', 'PGR031G2686' => 'pgr', 'PGR042G0809' => 'pgr', 'PGR142G0193' => 'pgr', 'PGSC0003DMG400011066' => 'stu', 'PGSC0003DMG400012041' => 'stu', 'PGSC0003DMG400013678' => 'stu', 'PGSC0003DMG400023477' => 'stu', 'PGSC0003DMG400025956' => 'stu', 'PGSC0003DMG401019151' => 'stu', 'Phvul.006G116400' => 'pvu', 'Phvul.007G097300' => 'pvu', 'Phvul.010G015000' => 'pvu', 'Phvul.010G083900' => 'pvu', 'Potri.001G117100' => 'ptr', 'Potri.002G147300' => 'ptr', 'Potri.003G115600' => 'ptr', 'Potri.006G087400' => 'ptr', 'Potri.010G226100' => 'ptr', 'Potri.014G069200' => 'ptr', 'Potri.014G104000' => 'ptr', 'Potri.016G100200' => 'ptr', 'Pp3c10_20450' => 'ppa', 'Pp3c1_42400' => 'ppa', 'Pp3c3_24390' => 'ppa', 'Pp3c3_2860' => 'ppa', 'PRCOL_00003193' => 'pco', 'Prupe.2G144500' => 'ppe', 'Prupe.2G195700' => 'ppe', 'Prupe.2G209800' => 'ppe', 'Prupe.5G080000' => 'ppe', 'Prupe.6G257900' => 'ppe', 'Psat3g001160' => 'psa', 'Psat6g181880' => 'psa', 'Psat7g233720' => 'psa', 'PSO063G7587' => 'pso', 'PSO339G2145' => 'pso', 'PSO339G3369' => 'pso', 'PSO478G2747' => 'pso', 'PSO513G0140' => 'pso', 'PSO782G1614' => 'pso', 'PSO782G4889' => 'pso', 'PSO782G5485' => 'pso', 'PSO801G0241' => 'pso', 'QL07p048854' => 'qlo', 'QL08p046745' => 'qlo', 'QL08p052606' => 'qlo', 'QL08p053414' => 'qlo', 'QL08p054868' => 'qlo', 'RcHm_v2.0_Chr1g0350251' => 'rch', 'RcHm_v2.0_Chr1g0360851' => 'rch', 'RcHm_v2.0_Chr1g0362791' => 'rch', 'RcHm_v2.0_Chr3g0466281' => 'rch', 'RcHm_v2.0_Chr7g0201481' => 'rch', 'Rhsim01G0148600' => 'rsi', 'Rhsim05G0194400' => 'rsi', 'Rhsim07G0000700' => 'rsi', 'Rhsim07G0000800' => 'rsi', 'Rhsim07G0027900' => 'rsi', 'Rhsim09G0149500' => 'rsi', 'RhsimUnG0186900' => 'rsi', 'Sabra01G0089900' => 'sbr', 'Sabra02G0114700' => 'sbr', 'Sabra02G0116300' => 'sbr', 'Sabra03G0080100' => 'sbr', 'Sabra08G0024300' => 'sbr', 'Sabra10G0174300' => 'sbr', 'Sabra14G0048900' => 'sbr', 'Sabra14G0076500' => 'sbr', 'SalBow5G2513' => 'sbo', 'Sc01g0002300' => 'sci', 'Sc01g0004450' => 'sci', 'Sc06g0001680' => 'sci', 'Sc23g0003580' => 'sci', 'Sed0000913' => 'sed', 'Sed0001655' => 'sed', 'Sed0007745' => 'sed', 'Sed0010951' => 'sed', 'Sed0017599' => 'sed', 'Sed0021405' => 'sed', 'Sed0022810' => 'sed', 'SEGI_07099' => 'sgi', 'SEGI_11931' => 'sgi', 'SEGI_13187' => 'sgi', 'SEGI_29958' => 'sgi', 'SEGI_36351' => 'sgi', 'SGA_v2.0_scaffold126G33770' => 'sas', 'SGA_v2.0_scaffold153G37003' => 'sas', 'SGA_v2.0_scaffold2G01359' => 'sas', 'SGA_v2.0_scaffold5G03064' => 'sas', 'SGA_v2.0_scaffold95G28903' => 'sas', 'SHI12701' => 'shi', 'SHI26410' => 'shi', 'SHI38997' => 'shi', 'SHI53759' => 'shi', 'SHI53886' => 'shi', 'SHI54714' => 'shi', 'SMO011G0041' => 'smo', 'SMO146G0251' => 'smo', 'SMO160G0004' => 'smo', 'SMO174G0057' => 'smo', 'SMO244G0089' => 'smo', 'SMO296G0011' => 'smo', 'Solyc01g091280.3' => 'sly', 'Solyc05g047610.3' => 'sly', 'Solyc05g047640.3' => 'sly', 'Solyc05g055630.3' => 'sly', 'Solyc10g018160.2' => 'sly', 'Solyc10g084820.2' => 'sly', 'Solyc10g086565.2' => 'sly', 'Sopen01g037030' => 'spe', 'Sopen05g027920' => 'spe', 'Sopen05g034070' => 'spe', 'Sopen10g007260' => 'spe', 'Sopen10g034260' => 'spe', 'Sopen10g035950' => 'spe', 'Sp3g07710' => 'spa', 'Sp4g27420' => 'spa', 'Sp5g02450' => 'spa', 'Sp6g01280' => 'spa', 'Sp6g38480' => 'spa', 'Sp7g20780' => 'spa', 'TAR374G1413' => 'tar', 'TAR623G1777' => 'tar', 'TAR629G2370' => 'tar', 'TAR633G1759' => 'tar', 'TAR636G3387' => 'tar', 'THA.LOC104802447' => 'tha', 'THA.LOC104813916' => 'tha', 'THA.LOC104816423' => 'tha', 'THA.LOC104817246' => 'tha', 'THA.LOC104825895' => 'tha', 'Thecc.01G335200' => 'tca', 'Thecc.01G377400' => 'tca', 'Thecc.03G262200' => 'tca', 'Thecc.05G036800' => 'tca', 'Thecc.10G080500' => 'tca', 'Thecc.10G080800' => 'tca', 'Thhalv10001560m.g' => 'esa', 'Thhalv10006120m.g' => 'esa', 'Thhalv10014375m.g' => 'esa', 'Thhalv10021264m.g' => 'esa', 'Thhalv10028856m.g' => 'esa', 'TPR.G1914' => 'tpr', 'TPR.G4757' => 'tpr', 'TPR.G5595' => 'tpr', 'TWI14G0952' => 'twi', 'TWI14G1307' => 'twi', 'TWI38G2143' => 'twi', 'TWI59G0826' => 'twi', 'TWI77G0527' => 'twi', 'TWI81G0150' => 'twi', 'unitig_21.g21018' => 'ugi', 'unitig_26.g9725' => 'ugi', 'unitig_744.g24653' => 'ugi', 'unitig_749.g13778' => 'ugi', 'unitig_899.g15035' => 'ugi', 'vmacro04296' => 'vma', 'vmacro04852' => 'vma', 'vmacro13404' => 'vma', 'vmacro20169' => 'vma', 'vmacro21014' => 'vma', 'VMungo0331G0237' => 'vmu', 'VMungo0331G0706' => 'vmu', 'VMungo0331G1361' => 'vmu', 'VMungo0331G1489' => 'vmu', 'VMungo0540G1037' => 'vmu', 'VMungo0720G2487' => 'vmu', 'VMungo0720G2721' => 'vmu', 'Zm00001eb086860' => 'zma', 'Zm00001eb104760' => 'zma', 'Zm00001eb148220' => 'zma', 'Zm00001eb259030' => 'zma', 'Zm00001eb289590' => 'zma', 'Zm00001eb420150' => 'zma' ) $gf_id = 'HOM05D000968' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000968' ) $data_identifier = 'HOM05D000968' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 19, 'bol' => (int) 9, 'bra' => (int) 12, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 5, 'ccan' => (int) 7, 'cde' => (int) 5, 'cfa' => (int) 8, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 4, 'dca' => (int) 5, 'din' => (int) 5, 'dzi' => (int) 12, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 25, 'fve' => (int) 5, 'gma' => (int) 9, 'ghi' => (int) 18, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 7, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 5, 'sun' => (int) 2, 'lal' => (int) 9, 'lja' => (int) 5, 'lonja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 9, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 2, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 3, 'stu' => (int) 6, 'pvu' => (int) 4, 'ptr' => (int) 8, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 3, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 1, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 5, 'sas' => (int) 5, 'shi' => (int) 6, 'smo' => (int) 6, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 3, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420150' $species_info = array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ) $local_species = 'ath' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000968', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p31690' => 'bna', 'A03p36040' => 'bna', 'A03p53730' => 'bna', 'A04p01410' => 'bna', 'A05p05420' => 'bna', 'A05p39630' => 'bna', 'A05p39640' => 'bna', 'A09p00970' => 'bna', 'A09p53060' => 'bna', 'A10p31890' => 'bna', 'Aa31LG10G15040' => 'aar', 'Aa31LG1G21090' => 'aar', 'Aa31LG1G26900' => 'aar', 'Aa31LG3G1820' => 'aar', 'Aa31LG5G1100' => 'aar', 'Aa31LG6G4740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2265' => 'aag', 'Actinidia07998' => 'ach', 'Actinidia11266' => 'ach', 'Actinidia12682' => 'ach', 'Actinidia26479' => 'ach', 'Actinidia31406' => 'ach', 'Actinidia32437' => 'ach', 'Actinidia38862' => 'ach', 'Ah.05g174230' => 'amhyb', 'Ah.05g179070' => 'amhyb', 'Ah.05g179090' => 'amhyb', 'Ah.12g059950' => 'amhyb', 'AL3G20480' => 'aly', 'AL4G44520' => 'aly', 'AL5G43110' => 'aly', 'AL6G13890' => 'aly', 'AL6G52620' => 'aly', 'AL7G30830' => 'aly', 'Aqoxy1G00899' => 'aox', 'Aqoxy5G04333' => 'aox', 'Aqoxy7G00641' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3IZ0NN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4EF6AW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W9P8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79GA3M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C43NQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFCU6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G95YVJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCHK29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LU1UG8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX91RN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGB4B1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8DA0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9H7JI' => 'arhy', 'AT3G09320' => 'ath', 'AT3G60800' => 'ath', 'AT4G00840' => 'ath', 'AT4G22750' => 'ath', 'AT5G04270' => 'ath', 'ATR0090G003' => 'atr', 'ATR0559G349' => 'atr', 'ATR0680G261' => 'atr', 'ATR0810G048' => 'atr', 'Atru.chr12.831' => 'acertr', 'Atru.chr5.303' => 'acertr', 'Atru.chr5.748' => 'acertr', 'Atru.chr8.1999' => 'acertr', 'Atru.chr9.1436' => 'acertr', 'AUR62004211' => 'cqu', 'AUR62004548' => 'cqu', 'AUR62013637' => 'cqu', 'AUR62022662' => 'cqu', 'AUR62025777' => 'cqu', 'AUR62042386' => 'cqu', 'BcaB01g02310' => 'bca', 'BcaB01g06062' => 'bca', 'BcaB02g08975' => 'bca', 'BcaB02g08980' => 'bca', 'BcaC01g04228' => 'bca', 'BcaC01g06830' => 'bca', 'BcaC02g10186' => 'bca', 'BcaC02g12214' => 'bca', 'BcaC04g24101' => 'bca', 'BcaC05g29520' => 'bca', 'BcaC05g29661' => 'bca', 'BcaC06g32130' => 'bca', 'BcaC06g32131' => 'bca', 'BcaC07g40601' => 'bca', 'BcaC07g42641' => 'bca', 'BcaNung01038' => 'bca', 'BcaNung01676' => 'bca', 'BcaNung02480' => 'bca', 'BcaNung07376' => 'bca', 'BolC3t16146H' => 'bol', 'BolC3t16637H' => 'bol', 'BolC4t22257H' => 'bol', 'BolC4t24728H' => 'bol', 'BolC5t34517H' => 'bol', 'BolC7t45703H' => 'bol', 'BolC8t51166H' => 'bol', 'BolC9t53038H' => 'bol', 'BolC9t60000H' => 'bol', 'BraA01t01345Z' => 'bra', 'BraA01t01346Z' => 'bra', 'BraA01t01348Z' => 'bra', 'BraA03t12347Z' => 'bra', 'BraA03t12775Z' => 'bra', 'BraA03t14439Z' => 'bra', 'BraA04t15860Z' => 'bra', 'BraA05t19511Z' => 'bra', 'BraA05t22746Z' => 'bra', 'BraA09t35767Z' => 'bra', 'BraA09t40732Z' => 'bra', 'BraA10t45233Z' => 'bra', 'C03p38720' => 'bna', 'C03p43680' => 'bna', 'C04p06350' => 'bna', 'C04p31800' => 'bna', 'C05p58680' => 'bna', 'C07p52110' => 'bna', 'C08p35760' => 'bna', 'C09p01050' => 'bna', 'C09p72600' => 'bna', 'CAN.G106.2' => 'can', 'CAN.G1482.1' => 'can', 'CAN.G324.12' => 'can', 'CAN.G388.20' => 'can', 'CAN.G412.7' => 'can', 'CAN.G694.32' => 'can', 'CAN.G92.12' => 'can', 'CANSAT11G2353' => 'cansat', 'CANSAT21G1398' => 'cansat', 'CANSAT56G2456' => 'cansat', 'CANSAT56G3031' => 'cansat', 'CANSAT56G4539' => 'cansat', 'CARHR083680' => 'chi', 'CARHR171190' => 'chi', 'CARHR209010' => 'chi', 'CARHR229680' => 'chi', 'CARHR249490' => 'chi', 'Carub.0003s0844' => 'cru', 'Carub.0005s2755' => 'cru', 'Carub.0006s0322' => 'cru', 'Carub.0006s3586' => 'cru', 'Carub.0007s1855' => 'cru', 'Ca_07808_v3' => 'car', 'Ca_09535_v3' => 'car', 'Ca_10548_v3' => 'car', 'Ca_19913_v3' => 'car', 'Ca_19916_v3' => 'car', 'Ca_19975_v3' => 'car', 'CBR_g22876' => 'cbr', 'CBR_g22879' => 'cbr', 'CBR_g38491' => 'cbr', 'CBR_g54185' => 'cbr', 'CBR_g54190' => 'cbr', 'Cc02_g11020' => 'ccan', 'Cc02_g23920' => 'ccan', 'Cc02_g39860' => 'ccan', 'Cc02_g39870' => 'ccan', 'Cc03_g06760' => 'ccan', 'Cc06_g02450' => 'ccan', 'Cc09_g09450' => 'ccan', 'CDE02G1959' => 'cde', 'CDE04G0600' => 'cde', 'CDE07G1996' => 'cde', 'CDE07G2078' => 'cde', 'CDE11G0611' => 'cde', 'Cfa001683' => 'cfa', 'Cfa001734' => 'cfa', 'Cfa001737' => 'cfa', 'Cfa003751' => 'cfa', 'Cfa012019' => 'cfa', 'Cfa017353' => 'cfa', 'Cfa017732' => 'cfa', 'Cfa022464' => 'cfa', 'Ciclev10012400m.g' => 'ccl', 'Ciclev10021242m.g' => 'ccl', 'Ciclev10021302m.g' => 'ccl', 'Ciclev10021463m.g' => 'ccl', 'Ciclev10032359m.g' => 'ccl', 'CiPaw.01G081000' => 'cil', 'CiPaw.01G262500' => 'cil', 'CiPaw.01G269800' => 'cil', 'CiPaw.02G168400' => 'cil', 'CiPaw.05G119500' => 'cil', 'CiPaw.11G147300' => 'cil', 'ClCG01G003630' => 'cla', 'ClCG05G000510' => 'cla', 'ClCG05G002300' => 'cla', 'ClCG08G007650' => 'cla', 'ClCG10G021250' => 'cla', 'COL.COLO4_06218' => 'col', 'COL.COLO4_12538' => 'col', 'COL.COLO4_14775' => 'col', 'COL.COLO4_23875' => 'col', 'Cpa.g.sc141.16' => 'cpa', 'Cpa.g.sc169.16' => 'cpa', 'Cpa.g.sc244.4' => 'cpa', 'Cpa.g.sc244.5' => 'cpa', 'Cpa.g.sc29.87' => 'cpa', 'Cpa.g.sc53.115' => 'cpa', 'Cre03.g207502' => 'cre', 'Cre06.g277000' => 'cre', 'Cre09.g394050' => 'cre', 'CsaV3_3G007680' => 'csa', 'CsaV3_3G009710' => 'csa', 'CsaV3_3G034790' => 'csa', 'CsaV3_5G003750' => 'csa', 'CsaV3_6G036620' => 'csa', 'CSS0002288' => 'camsi', 'CSS0011250' => 'camsi', 'CSS0021619' => 'camsi', 'CSS0046701' => 'camsi', 'DCAR_006420' => 'dca', 'DCAR_006865' => 'dca', 'DCAR_008558' => 'dca', 'DCAR_028754' => 'dca', 'DCAR_028755' => 'dca', 'Dinv31218' => 'din', 'Dinv32371' => 'din', 'Dinv34250' => 'din', 'Dinv37156' => 'din', 'Dinv43704' => 'din', 'Duzib093G1811' => 'dzi', 'Duzib106G1622' => 'dzi', 'Duzib114G0504' => 'dzi', 'Duzib128G0338' => 'dzi', 'Duzib128G1577' => 'dzi', 'Duzib133G0104' => 'dzi', 'Duzib133G1080' => 'dzi', 'Duzib138G0324' => 'dzi', 'Duzib138G0394' => 'dzi', 'Duzib205G0122' => 'dzi', 'Duzib268G1020' => 'dzi', 'Duzib268G1359' => 'dzi', 'ECA232G3929' => 'eca', 'ECA236G2210' => 'eca', 'ECA236G2287' => 'eca', 'ECA240G4568' => 'eca', 'ECA247G0894' => 'eca', 'EL10Ac1g00200' => 'bvu', 'EL10Ac1g00886' => 'bvu', 'EL10As1g23091' => 'bvu', 'EL10As1g23092' => 'bvu', 'Eucgr.A01284' => 'egr', 'Eucgr.A01285' => 'egr', 'Eucgr.D02456' => 'egr', 'Eucgr.E00018' => 'egr', 'Eucgr.E01439' => 'egr', 'Eucgr.G02859' => 'egr', 'FAN01G0168' => 'fan', 'FAN01G0453' => 'fan', 'FAN01G2761' => 'fan', 'FAN02G1239' => 'fan', 'FAN03G0645' => 'fan', 'FAN03G2707' => 'fan', 'FAN03G2978' => 'fan', 'FAN04G0227' => 'fan', 'FAN06G0091' => 'fan', 'FAN06G1418' => 'fan', 'FAN06G1512' => 'fan', 'FAN06G1986' => 'fan', 'FAN06G2905' => 'fan', 'FAN06G4325' => 'fan', 'FAN08G0033' => 'fan', 'FAN09G0642' => 'fan', 'FAN10G1763' => 'fan', 'FAN10G2026' => 'fan', 'FAN10G2513' => 'fan', 'FAN10G3402' => 'fan', 'FAN10G3564' => 'fan', 'FAN10G3987' => 'fan', 'FAN13G1490' => 'fan', 'FAN14G5857' => 'fan', 'FAN18G1188' => 'fan', 'FvH4_5g00750' => 'fve', 'FvH4_6g13410' => 'fve', 'FvH4_7g11740' => 'fve', 'FvH4_7g17410' => 'fve', 'FvH4_7g18860' => 'fve', 'Glyma.01G099100' => 'gma', 'Glyma.01G142300' => 'gma', 'Glyma.03G025500' => 'gma', 'Glyma.03G069700' => 'gma', 'Glyma.03G260000' => 'gma', 'Glyma.09G269800' => 'gma', 'Glyma.10G208700' => 'gma', 'Glyma.18G220400' => 'gma', 'Glyma.20G182000' => 'gma', 'Gohir.A01G221726' => 'ghi', 'Gohir.A07G134600' => 'ghi', 'Gohir.A07G146000' => 'ghi', 'Gohir.A08G173900' => 'ghi', 'Gohir.A09G194900' => 'ghi', 'Gohir.A10G204100' => 'ghi', 'Gohir.A11G080600' => 'ghi', 'Gohir.A11G327500' => 'ghi', 'Gohir.A12G101800' => 'ghi', 'Gohir.D01G211200' => 'ghi', 'Gohir.D07G139200' => 'ghi', 'Gohir.D07G152100' => 'ghi', 'Gohir.D08G192600' => 'ghi', 'Gohir.D09G189200' => 'ghi', 'Gohir.D10G212000' => 'ghi', 'Gohir.D11G085200' => 'ghi', 'Gohir.D11G346400' => 'ghi', 'Gohir.D12G104800' => 'ghi', 'Gorai.001G151300' => 'gra', 'Gorai.001G174100' => 'gra', 'Gorai.002G257000' => 'gra', 'Gorai.004G202600' => 'gra', 'Gorai.007G090900' => 'gra', 'Gorai.007G376700' => 'gra', 'Gorai.008G114100' => 'gra', 'Gorai.011G237900' => 'gra', 'GSVIVG01005450001' => 'vvi', 'GSVIVG01016232001' => 'vvi', 'GSVIVG01026157001' => 'vvi', 'GSVIVG01027419001' => 'vvi', 'GSVIVG01027631001' => 'vvi', 'GSVIVG01034143001' => 'vvi', 'HanXRQChr03g0093921' => 'han', 'HanXRQChr04g0120001' => 'han', 'HanXRQChr04g0122561' => 'han', 'HanXRQChr09g0246851' => 'han', 'HanXRQChr10g0293311' => 'han', 'HanXRQChr13g0425231' => 'han', 'HanXRQChr16g0532571' => 'han', 'Haze_09050' => 'cav', 'Haze_15715' => 'cav', 'Haze_15716' => 'cav', 'Haze_16803' => 'cav', 'Haze_16850' => 'cav', 'Hma1.2p1_0301F.1_g118655' => 'hma', 'Hma1.2p1_0309F.1_g120590' => 'hma', 'Hma1.2p1_0936F.1_g238900' => 'hma', 'Hma1.2p1_3552F.1_g336740' => 'hma', 'HPP92_003520' => 'vpl', 'HPP92_006628' => 'vpl', 'HPP92_006645' => 'vpl', 'HPP92_014669' => 'vpl', 'HPP92_015077' => 'vpl', 'Hund16742' => 'sun', 'Hund17022' => 'sun', 'Lalb_Chr02g0152131' => 'lal', 'Lalb_Chr05g0225371' => 'lal', 'Lalb_Chr07g0189841' => 'lal', 'Lalb_Chr07g0192961' => 'lal', 'Lalb_Chr12g0208221' => 'lal', 'Lalb_Chr13g0291211' => 'lal', 'Lalb_Chr13g0291781' => 'lal', 'Lalb_Chr18g0044651' => 'lal', 'Lalb_Chr21g0313731' => 'lal', 'Lj1g0022533' => 'lja', 'Lj2A18T50' => 'lonja', 'Lj2A92G93' => 'lonja', 'Lj3A965T73' => 'lonja', 'Lj3g0000673' => 'lja', 'Lj3g0002666' => 'lja', 'Lj4g0016985' => 'lja', 'Lj5g0003625' => 'lja', 'Lj7A529G36' => 'lonja', 'Lj9A569T49' => 'lonja', 'Lj9A604T63' => 'lonja', 'Lsat_1_v5_gn_3_132060' => 'lsa', 'Lsat_1_v5_gn_4_68941' => 'lsa', 'Lsat_1_v5_gn_5_95580' => 'lsa', 'Lsat_1_v5_gn_7_161' => 'lsa', 'Lsat_1_v5_gn_7_7041' => 'lsa', 'Lsat_1_v5_gn_9_33481' => 'lsa', 'Lsat_1_v5_gn_9_68260' => 'lsa', 'Manes.01G073100' => 'mes', 'Manes.01G266300' => 'mes', 'Manes.02G033300' => 'mes', 'Manes.05G017900' => 'mes', 'Manes.05G046100' => 'mes', 'Manes.08G080900' => 'mes', 'Manes.10G049400' => 'mes', 'Mapoly0009s0186' => 'mpo', 'Mapoly0036s0118' => 'mpo', 'Mapoly0101s0046' => 'mpo', 'MBI04_g30218_MAGBIO' => 'mbi', 'MBI04_g35564_MAGBIO' => 'mbi', 'MBI12_g34011_MAGBIO' => 'mbi', 'MBI14_g04655_MAGBIO' => 'mbi', 'MCO07G653' => 'mco', 'MCO10G173' => 'mco', 'MD01G1087100' => 'mdo', 'MD01G1104200' => 'mdo', 'MD02G1205100' => 'mdo', 'MD04G1079200' => 'mdo', 'MD04G1131400' => 'mdo', 'MD07G1121600' => 'mdo', 'MD07G1157300' => 'mdo', 'MD07G1171000' => 'mdo', 'MD12G1144500' => 'mdo', 'Medtr1g094610' => 'mtr', 'Medtr4g021795' => 'mtr', 'Medtr4g023760' => 'mtr', 'Medtr7g118050' => 'mtr', 'MELO3C005582.2' => 'cme', 'MELO3C005989.2' => 'cme', 'MELO3C006192.2' => 'cme', 'MELO3C009248.2' => 'cme', 'MELO3C019817.2' => 'cme', 'Migut.B01625' => 'egut', 'Migut.B01915' => 'egut', 'Migut.F01721' => 'egut', 'Migut.J00314' => 'egut', 'MSTRG.20742' => 'ama', 'MSTRG.8134' => 'ama', 'Nitab4.5_0000096g0010' => 'nta', 'Nitab4.5_0000202g0030' => 'nta', 'Nitab4.5_0000216g0370' => 'nta', 'Nitab4.5_0000457g0230' => 'nta', 'Nitab4.5_0001702g0170' => 'nta', 'Nitab4.5_0003607g0010' => 'nta', 'Nitab4.5_0004917g0020' => 'nta', 'Nitab4.5_0007059g0010' => 'nta', 'Nitab4.5_0007184g0010' => 'nta', 'Nitab4.5_0007346g0020' => 'nta', 'Nn1g00410' => 'nnu', 'Nn1g01252' => 'nnu', 'Nn2g11168' => 'nnu', 'Nn2g13403' => 'nnu', 'Nn2g13760' => 'nnu', 'Nn4g26380' => 'nnu', 'Oeu000806.2' => 'oeu', 'Oeu005788.1' => 'oeu', 'Oeu006900.3' => 'oeu', 'Oeu007797.1' => 'oeu', 'Oeu011932.1' => 'oeu', 'Oeu022739.1' => 'oeu', 'Oeu037918.1' => 'oeu', 'Oeu055490.2' => 'oeu', 'Os01g0844400' => 'osa', 'Os02g0819100' => 'osa', 'Os03g0804300' => 'osa', 'Os05g0458000' => 'osa', 'Os07g0467800' => 'osa', 'Os12g0602200' => 'osa', 'Peaxi162Scf00013g03444' => 'pax', 'Peaxi162Scf00094g01120' => 'pax', 'Peaxi162Scf00191g01211' => 'pax', 'Peaxi162Scf00238g01110' => 'pax', 'Peaxi162Scf00330g00719' => 'pax', 'Peaxi162Scf00627g00018' => 'pax', 'PGR031G2686' => 'pgr', 'PGR042G0809' => 'pgr', 'PGR142G0193' => 'pgr', 'PGSC0003DMG400011066' => 'stu', 'PGSC0003DMG400012041' => 'stu', 'PGSC0003DMG400013678' => 'stu', 'PGSC0003DMG400023477' => 'stu', 'PGSC0003DMG400025956' => 'stu', 'PGSC0003DMG401019151' => 'stu', 'Phvul.006G116400' => 'pvu', 'Phvul.007G097300' => 'pvu', 'Phvul.010G015000' => 'pvu', 'Phvul.010G083900' => 'pvu', 'Potri.001G117100' => 'ptr', 'Potri.002G147300' => 'ptr', 'Potri.003G115600' => 'ptr', 'Potri.006G087400' => 'ptr', 'Potri.010G226100' => 'ptr', 'Potri.014G069200' => 'ptr', 'Potri.014G104000' => 'ptr', 'Potri.016G100200' => 'ptr', 'Pp3c10_20450' => 'ppa', 'Pp3c1_42400' => 'ppa', 'Pp3c3_24390' => 'ppa', 'Pp3c3_2860' => 'ppa', 'PRCOL_00003193' => 'pco', 'Prupe.2G144500' => 'ppe', 'Prupe.2G195700' => 'ppe', 'Prupe.2G209800' => 'ppe', 'Prupe.5G080000' => 'ppe', 'Prupe.6G257900' => 'ppe', 'Psat3g001160' => 'psa', 'Psat6g181880' => 'psa', 'Psat7g233720' => 'psa', 'PSO063G7587' => 'pso', 'PSO339G2145' => 'pso', 'PSO339G3369' => 'pso', 'PSO478G2747' => 'pso', 'PSO513G0140' => 'pso', 'PSO782G1614' => 'pso', 'PSO782G4889' => 'pso', 'PSO782G5485' => 'pso', 'PSO801G0241' => 'pso', 'QL07p048854' => 'qlo', 'QL08p046745' => 'qlo', 'QL08p052606' => 'qlo', 'QL08p053414' => 'qlo', 'QL08p054868' => 'qlo', 'RcHm_v2.0_Chr1g0350251' => 'rch', 'RcHm_v2.0_Chr1g0360851' => 'rch', 'RcHm_v2.0_Chr1g0362791' => 'rch', 'RcHm_v2.0_Chr3g0466281' => 'rch', 'RcHm_v2.0_Chr7g0201481' => 'rch', 'Rhsim01G0148600' => 'rsi', 'Rhsim05G0194400' => 'rsi', 'Rhsim07G0000700' => 'rsi', 'Rhsim07G0000800' => 'rsi', 'Rhsim07G0027900' => 'rsi', 'Rhsim09G0149500' => 'rsi', 'RhsimUnG0186900' => 'rsi', 'Sabra01G0089900' => 'sbr', 'Sabra02G0114700' => 'sbr', 'Sabra02G0116300' => 'sbr', 'Sabra03G0080100' => 'sbr', 'Sabra08G0024300' => 'sbr', 'Sabra10G0174300' => 'sbr', 'Sabra14G0048900' => 'sbr', 'Sabra14G0076500' => 'sbr', 'SalBow5G2513' => 'sbo', 'Sc01g0002300' => 'sci', 'Sc01g0004450' => 'sci', 'Sc06g0001680' => 'sci', 'Sc23g0003580' => 'sci', 'Sed0000913' => 'sed', 'Sed0001655' => 'sed', 'Sed0007745' => 'sed', 'Sed0010951' => 'sed', 'Sed0017599' => 'sed', 'Sed0021405' => 'sed', 'Sed0022810' => 'sed', 'SEGI_07099' => 'sgi', 'SEGI_11931' => 'sgi', 'SEGI_13187' => 'sgi', 'SEGI_29958' => 'sgi', 'SEGI_36351' => 'sgi', 'SGA_v2.0_scaffold126G33770' => 'sas', 'SGA_v2.0_scaffold153G37003' => 'sas', 'SGA_v2.0_scaffold2G01359' => 'sas', 'SGA_v2.0_scaffold5G03064' => 'sas', 'SGA_v2.0_scaffold95G28903' => 'sas', 'SHI12701' => 'shi', 'SHI26410' => 'shi', 'SHI38997' => 'shi', 'SHI53759' => 'shi', 'SHI53886' => 'shi', 'SHI54714' => 'shi', 'SMO011G0041' => 'smo', 'SMO146G0251' => 'smo', 'SMO160G0004' => 'smo', 'SMO174G0057' => 'smo', 'SMO244G0089' => 'smo', 'SMO296G0011' => 'smo', 'Solyc01g091280.3' => 'sly', 'Solyc05g047610.3' => 'sly', 'Solyc05g047640.3' => 'sly', 'Solyc05g055630.3' => 'sly', 'Solyc10g018160.2' => 'sly', 'Solyc10g084820.2' => 'sly', 'Solyc10g086565.2' => 'sly', 'Sopen01g037030' => 'spe', 'Sopen05g027920' => 'spe', 'Sopen05g034070' => 'spe', 'Sopen10g007260' => 'spe', 'Sopen10g034260' => 'spe', 'Sopen10g035950' => 'spe', 'Sp3g07710' => 'spa', 'Sp4g27420' => 'spa', 'Sp5g02450' => 'spa', 'Sp6g01280' => 'spa', 'Sp6g38480' => 'spa', 'Sp7g20780' => 'spa', 'TAR374G1413' => 'tar', 'TAR623G1777' => 'tar', 'TAR629G2370' => 'tar', 'TAR633G1759' => 'tar', 'TAR636G3387' => 'tar', 'THA.LOC104802447' => 'tha', 'THA.LOC104813916' => 'tha', 'THA.LOC104816423' => 'tha', 'THA.LOC104817246' => 'tha', 'THA.LOC104825895' => 'tha', 'Thecc.01G335200' => 'tca', 'Thecc.01G377400' => 'tca', 'Thecc.03G262200' => 'tca', 'Thecc.05G036800' => 'tca', 'Thecc.10G080500' => 'tca', 'Thecc.10G080800' => 'tca', 'Thhalv10001560m.g' => 'esa', 'Thhalv10006120m.g' => 'esa', 'Thhalv10014375m.g' => 'esa', 'Thhalv10021264m.g' => 'esa', 'Thhalv10028856m.g' => 'esa', 'TPR.G1914' => 'tpr', 'TPR.G4757' => 'tpr', 'TPR.G5595' => 'tpr', 'TWI14G0952' => 'twi', 'TWI14G1307' => 'twi', 'TWI38G2143' => 'twi', 'TWI59G0826' => 'twi', 'TWI77G0527' => 'twi', 'TWI81G0150' => 'twi', 'unitig_21.g21018' => 'ugi', 'unitig_26.g9725' => 'ugi', 'unitig_744.g24653' => 'ugi', 'unitig_749.g13778' => 'ugi', 'unitig_899.g15035' => 'ugi', 'vmacro04296' => 'vma', 'vmacro04852' => 'vma', 'vmacro13404' => 'vma', 'vmacro20169' => 'vma', 'vmacro21014' => 'vma', 'VMungo0331G0237' => 'vmu', 'VMungo0331G0706' => 'vmu', 'VMungo0331G1361' => 'vmu', 'VMungo0331G1489' => 'vmu', 'VMungo0540G1037' => 'vmu', 'VMungo0720G2487' => 'vmu', 'VMungo0720G2721' => 'vmu', 'Zm00001eb086860' => 'zma', 'Zm00001eb104760' => 'zma', 'Zm00001eb148220' => 'zma', 'Zm00001eb259030' => 'zma', 'Zm00001eb289590' => 'zma', 'Zm00001eb420150' => 'zma' ), 'gf_id' => 'HOM05D000968', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000968' ), 'data_identifier' => 'HOM05D000968', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000968', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p31690' => 'bna', 'A03p36040' => 'bna', 'A03p53730' => 'bna', 'A04p01410' => 'bna', 'A05p05420' => 'bna', 'A05p39630' => 'bna', 'A05p39640' => 'bna', 'A09p00970' => 'bna', 'A09p53060' => 'bna', 'A10p31890' => 'bna', 'Aa31LG10G15040' => 'aar', 'Aa31LG1G21090' => 'aar', 'Aa31LG1G26900' => 'aar', 'Aa31LG3G1820' => 'aar', 'Aa31LG5G1100' => 'aar', 'Aa31LG6G4740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2265' => 'aag', 'Actinidia07998' => 'ach', 'Actinidia11266' => 'ach', 'Actinidia12682' => 'ach', 'Actinidia26479' => 'ach', 'Actinidia31406' => 'ach', 'Actinidia32437' => 'ach', 'Actinidia38862' => 'ach', 'Ah.05g174230' => 'amhyb', 'Ah.05g179070' => 'amhyb', 'Ah.05g179090' => 'amhyb', 'Ah.12g059950' => 'amhyb', 'AL3G20480' => 'aly', 'AL4G44520' => 'aly', 'AL5G43110' => 'aly', 'AL6G13890' => 'aly', 'AL6G52620' => 'aly', 'AL7G30830' => 'aly', 'Aqoxy1G00899' => 'aox', 'Aqoxy5G04333' => 'aox', 'Aqoxy7G00641' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3IZ0NN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4EF6AW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W9P8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79GA3M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C43NQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFCU6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G95YVJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCHK29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LU1UG8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX91RN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGB4B1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8DA0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9H7JI' => 'arhy', 'AT3G09320' => 'ath', 'AT3G60800' => 'ath', 'AT4G00840' => 'ath', 'AT4G22750' => 'ath', 'AT5G04270' => 'ath', 'ATR0090G003' => 'atr', 'ATR0559G349' => 'atr', 'ATR0680G261' => 'atr', 'ATR0810G048' => 'atr', 'Atru.chr12.831' => 'acertr', 'Atru.chr5.303' => 'acertr', 'Atru.chr5.748' => 'acertr', 'Atru.chr8.1999' => 'acertr', 'Atru.chr9.1436' => 'acertr', 'AUR62004211' => 'cqu', 'AUR62004548' => 'cqu', 'AUR62013637' => 'cqu', 'AUR62022662' => 'cqu', 'AUR62025777' => 'cqu', 'AUR62042386' => 'cqu', 'BcaB01g02310' => 'bca', 'BcaB01g06062' => 'bca', 'BcaB02g08975' => 'bca', 'BcaB02g08980' => 'bca', 'BcaC01g04228' => 'bca', 'BcaC01g06830' => 'bca', 'BcaC02g10186' => 'bca', 'BcaC02g12214' => 'bca', 'BcaC04g24101' => 'bca', 'BcaC05g29520' => 'bca', 'BcaC05g29661' => 'bca', 'BcaC06g32130' => 'bca', 'BcaC06g32131' => 'bca', 'BcaC07g40601' => 'bca', 'BcaC07g42641' => 'bca', 'BcaNung01038' => 'bca', 'BcaNung01676' => 'bca', 'BcaNung02480' => 'bca', 'BcaNung07376' => 'bca', 'BolC3t16146H' => 'bol', 'BolC3t16637H' => 'bol', 'BolC4t22257H' => 'bol', 'BolC4t24728H' => 'bol', 'BolC5t34517H' => 'bol', 'BolC7t45703H' => 'bol', 'BolC8t51166H' => 'bol', 'BolC9t53038H' => 'bol', 'BolC9t60000H' => 'bol', 'BraA01t01345Z' => 'bra', 'BraA01t01346Z' => 'bra', 'BraA01t01348Z' => 'bra', 'BraA03t12347Z' => 'bra', 'BraA03t12775Z' => 'bra', 'BraA03t14439Z' => 'bra', 'BraA04t15860Z' => 'bra', 'BraA05t19511Z' => 'bra', 'BraA05t22746Z' => 'bra', 'BraA09t35767Z' => 'bra', 'BraA09t40732Z' => 'bra', 'BraA10t45233Z' => 'bra', 'C03p38720' => 'bna', 'C03p43680' => 'bna', 'C04p06350' => 'bna', 'C04p31800' => 'bna', 'C05p58680' => 'bna', 'C07p52110' => 'bna', 'C08p35760' => 'bna', 'C09p01050' => 'bna', 'C09p72600' => 'bna', 'CAN.G106.2' => 'can', 'CAN.G1482.1' => 'can', 'CAN.G324.12' => 'can', 'CAN.G388.20' => 'can', 'CAN.G412.7' => 'can', 'CAN.G694.32' => 'can', 'CAN.G92.12' => 'can', 'CANSAT11G2353' => 'cansat', 'CANSAT21G1398' => 'cansat', 'CANSAT56G2456' => 'cansat', 'CANSAT56G3031' => 'cansat', 'CANSAT56G4539' => 'cansat', 'CARHR083680' => 'chi', 'CARHR171190' => 'chi', 'CARHR209010' => 'chi', 'CARHR229680' => 'chi', 'CARHR249490' => 'chi', 'Carub.0003s0844' => 'cru', 'Carub.0005s2755' => 'cru', 'Carub.0006s0322' => 'cru', 'Carub.0006s3586' => 'cru', 'Carub.0007s1855' => 'cru', 'Ca_07808_v3' => 'car', 'Ca_09535_v3' => 'car', 'Ca_10548_v3' => 'car', 'Ca_19913_v3' => 'car', 'Ca_19916_v3' => 'car', 'Ca_19975_v3' => 'car', 'CBR_g22876' => 'cbr', 'CBR_g22879' => 'cbr', 'CBR_g38491' => 'cbr', 'CBR_g54185' => 'cbr', 'CBR_g54190' => 'cbr', 'Cc02_g11020' => 'ccan', 'Cc02_g23920' => 'ccan', 'Cc02_g39860' => 'ccan', 'Cc02_g39870' => 'ccan', 'Cc03_g06760' => 'ccan', 'Cc06_g02450' => 'ccan', 'Cc09_g09450' => 'ccan', 'CDE02G1959' => 'cde', 'CDE04G0600' => 'cde', 'CDE07G1996' => 'cde', 'CDE07G2078' => 'cde', 'CDE11G0611' => 'cde', 'Cfa001683' => 'cfa', 'Cfa001734' => 'cfa', 'Cfa001737' => 'cfa', 'Cfa003751' => 'cfa', 'Cfa012019' => 'cfa', 'Cfa017353' => 'cfa', 'Cfa017732' => 'cfa', 'Cfa022464' => 'cfa', 'Ciclev10012400m.g' => 'ccl', 'Ciclev10021242m.g' => 'ccl', 'Ciclev10021302m.g' => 'ccl', 'Ciclev10021463m.g' => 'ccl', 'Ciclev10032359m.g' => 'ccl', 'CiPaw.01G081000' => 'cil', 'CiPaw.01G262500' => 'cil', 'CiPaw.01G269800' => 'cil', 'CiPaw.02G168400' => 'cil', 'CiPaw.05G119500' => 'cil', 'CiPaw.11G147300' => 'cil', 'ClCG01G003630' => 'cla', 'ClCG05G000510' => 'cla', 'ClCG05G002300' => 'cla', 'ClCG08G007650' => 'cla', 'ClCG10G021250' => 'cla', 'COL.COLO4_06218' => 'col', 'COL.COLO4_12538' => 'col', 'COL.COLO4_14775' => 'col', 'COL.COLO4_23875' => 'col', 'Cpa.g.sc141.16' => 'cpa', 'Cpa.g.sc169.16' => 'cpa', 'Cpa.g.sc244.4' => 'cpa', 'Cpa.g.sc244.5' => 'cpa', 'Cpa.g.sc29.87' => 'cpa', 'Cpa.g.sc53.115' => 'cpa', 'Cre03.g207502' => 'cre', 'Cre06.g277000' => 'cre', 'Cre09.g394050' => 'cre', 'CsaV3_3G007680' => 'csa', 'CsaV3_3G009710' => 'csa', 'CsaV3_3G034790' => 'csa', 'CsaV3_5G003750' => 'csa', 'CsaV3_6G036620' => 'csa', 'CSS0002288' => 'camsi', 'CSS0011250' => 'camsi', 'CSS0021619' => 'camsi', 'CSS0046701' => 'camsi', 'DCAR_006420' => 'dca', 'DCAR_006865' => 'dca', 'DCAR_008558' => 'dca', 'DCAR_028754' => 'dca', 'DCAR_028755' => 'dca', 'Dinv31218' => 'din', 'Dinv32371' => 'din', 'Dinv34250' => 'din', 'Dinv37156' => 'din', 'Dinv43704' => 'din', 'Duzib093G1811' => 'dzi', 'Duzib106G1622' => 'dzi', 'Duzib114G0504' => 'dzi', 'Duzib128G0338' => 'dzi', 'Duzib128G1577' => 'dzi', 'Duzib133G0104' => 'dzi', 'Duzib133G1080' => 'dzi', 'Duzib138G0324' => 'dzi', 'Duzib138G0394' => 'dzi', 'Duzib205G0122' => 'dzi', 'Duzib268G1020' => 'dzi', 'Duzib268G1359' => 'dzi', 'ECA232G3929' => 'eca', 'ECA236G2210' => 'eca', 'ECA236G2287' => 'eca', 'ECA240G4568' => 'eca', 'ECA247G0894' => 'eca', 'EL10Ac1g00200' => 'bvu', 'EL10Ac1g00886' => 'bvu', 'EL10As1g23091' => 'bvu', 'EL10As1g23092' => 'bvu', 'Eucgr.A01284' => 'egr', 'Eucgr.A01285' => 'egr', 'Eucgr.D02456' => 'egr', 'Eucgr.E00018' => 'egr', 'Eucgr.E01439' => 'egr', 'Eucgr.G02859' => 'egr', 'FAN01G0168' => 'fan', 'FAN01G0453' => 'fan', 'FAN01G2761' => 'fan', 'FAN02G1239' => 'fan', 'FAN03G0645' => 'fan', 'FAN03G2707' => 'fan', 'FAN03G2978' => 'fan', 'FAN04G0227' => 'fan', 'FAN06G0091' => 'fan', 'FAN06G1418' => 'fan', 'FAN06G1512' => 'fan', 'FAN06G1986' => 'fan', 'FAN06G2905' => 'fan', 'FAN06G4325' => 'fan', 'FAN08G0033' => 'fan', 'FAN09G0642' => 'fan', 'FAN10G1763' => 'fan', 'FAN10G2026' => 'fan', 'FAN10G2513' => 'fan', 'FAN10G3402' => 'fan', 'FAN10G3564' => 'fan', 'FAN10G3987' => 'fan', 'FAN13G1490' => 'fan', 'FAN14G5857' => 'fan', 'FAN18G1188' => 'fan', 'FvH4_5g00750' => 'fve', 'FvH4_6g13410' => 'fve', 'FvH4_7g11740' => 'fve', 'FvH4_7g17410' => 'fve', 'FvH4_7g18860' => 'fve', 'Glyma.01G099100' => 'gma', 'Glyma.01G142300' => 'gma', 'Glyma.03G025500' => 'gma', 'Glyma.03G069700' => 'gma', 'Glyma.03G260000' => 'gma', 'Glyma.09G269800' => 'gma', 'Glyma.10G208700' => 'gma', 'Glyma.18G220400' => 'gma', 'Glyma.20G182000' => 'gma', 'Gohir.A01G221726' => 'ghi', 'Gohir.A07G134600' => 'ghi', 'Gohir.A07G146000' => 'ghi', 'Gohir.A08G173900' => 'ghi', 'Gohir.A09G194900' => 'ghi', 'Gohir.A10G204100' => 'ghi', 'Gohir.A11G080600' => 'ghi', 'Gohir.A11G327500' => 'ghi', 'Gohir.A12G101800' => 'ghi', 'Gohir.D01G211200' => 'ghi', 'Gohir.D07G139200' => 'ghi', 'Gohir.D07G152100' => 'ghi', 'Gohir.D08G192600' => 'ghi', 'Gohir.D09G189200' => 'ghi', 'Gohir.D10G212000' => 'ghi', 'Gohir.D11G085200' => 'ghi', 'Gohir.D11G346400' => 'ghi', 'Gohir.D12G104800' => 'ghi', 'Gorai.001G151300' => 'gra', 'Gorai.001G174100' => 'gra', 'Gorai.002G257000' => 'gra', 'Gorai.004G202600' => 'gra', 'Gorai.007G090900' => 'gra', 'Gorai.007G376700' => 'gra', 'Gorai.008G114100' => 'gra', 'Gorai.011G237900' => 'gra', 'GSVIVG01005450001' => 'vvi', 'GSVIVG01016232001' => 'vvi', 'GSVIVG01026157001' => 'vvi', 'GSVIVG01027419001' => 'vvi', 'GSVIVG01027631001' => 'vvi', 'GSVIVG01034143001' => 'vvi', 'HanXRQChr03g0093921' => 'han', 'HanXRQChr04g0120001' => 'han', 'HanXRQChr04g0122561' => 'han', 'HanXRQChr09g0246851' => 'han', 'HanXRQChr10g0293311' => 'han', 'HanXRQChr13g0425231' => 'han', 'HanXRQChr16g0532571' => 'han', 'Haze_09050' => 'cav', 'Haze_15715' => 'cav', 'Haze_15716' => 'cav', 'Haze_16803' => 'cav', 'Haze_16850' => 'cav', 'Hma1.2p1_0301F.1_g118655' => 'hma', 'Hma1.2p1_0309F.1_g120590' => 'hma', 'Hma1.2p1_0936F.1_g238900' => 'hma', 'Hma1.2p1_3552F.1_g336740' => 'hma', 'HPP92_003520' => 'vpl', 'HPP92_006628' => 'vpl', 'HPP92_006645' => 'vpl', 'HPP92_014669' => 'vpl', 'HPP92_015077' => 'vpl', 'Hund16742' => 'sun', 'Hund17022' => 'sun', 'Lalb_Chr02g0152131' => 'lal', 'Lalb_Chr05g0225371' => 'lal', 'Lalb_Chr07g0189841' => 'lal', 'Lalb_Chr07g0192961' => 'lal', 'Lalb_Chr12g0208221' => 'lal', 'Lalb_Chr13g0291211' => 'lal', 'Lalb_Chr13g0291781' => 'lal', 'Lalb_Chr18g0044651' => 'lal', 'Lalb_Chr21g0313731' => 'lal', 'Lj1g0022533' => 'lja', 'Lj2A18T50' => 'lonja', 'Lj2A92G93' => 'lonja', 'Lj3A965T73' => 'lonja', 'Lj3g0000673' => 'lja', 'Lj3g0002666' => 'lja', 'Lj4g0016985' => 'lja', 'Lj5g0003625' => 'lja', 'Lj7A529G36' => 'lonja', 'Lj9A569T49' => 'lonja', 'Lj9A604T63' => 'lonja', 'Lsat_1_v5_gn_3_132060' => 'lsa', 'Lsat_1_v5_gn_4_68941' => 'lsa', 'Lsat_1_v5_gn_5_95580' => 'lsa', 'Lsat_1_v5_gn_7_161' => 'lsa', 'Lsat_1_v5_gn_7_7041' => 'lsa', 'Lsat_1_v5_gn_9_33481' => 'lsa', 'Lsat_1_v5_gn_9_68260' => 'lsa', 'Manes.01G073100' => 'mes', 'Manes.01G266300' => 'mes', 'Manes.02G033300' => 'mes', 'Manes.05G017900' => 'mes', 'Manes.05G046100' => 'mes', 'Manes.08G080900' => 'mes', 'Manes.10G049400' => 'mes', 'Mapoly0009s0186' => 'mpo', 'Mapoly0036s0118' => 'mpo', 'Mapoly0101s0046' => 'mpo', 'MBI04_g30218_MAGBIO' => 'mbi', 'MBI04_g35564_MAGBIO' => 'mbi', 'MBI12_g34011_MAGBIO' => 'mbi', 'MBI14_g04655_MAGBIO' => 'mbi', 'MCO07G653' => 'mco', 'MCO10G173' => 'mco', 'MD01G1087100' => 'mdo', 'MD01G1104200' => 'mdo', 'MD02G1205100' => 'mdo', 'MD04G1079200' => 'mdo', 'MD04G1131400' => 'mdo', 'MD07G1121600' => 'mdo', 'MD07G1157300' => 'mdo', 'MD07G1171000' => 'mdo', 'MD12G1144500' => 'mdo', 'Medtr1g094610' => 'mtr', 'Medtr4g021795' => 'mtr', 'Medtr4g023760' => 'mtr', 'Medtr7g118050' => 'mtr', 'MELO3C005582.2' => 'cme', 'MELO3C005989.2' => 'cme', 'MELO3C006192.2' => 'cme', 'MELO3C009248.2' => 'cme', 'MELO3C019817.2' => 'cme', 'Migut.B01625' => 'egut', 'Migut.B01915' => 'egut', 'Migut.F01721' => 'egut', 'Migut.J00314' => 'egut', 'MSTRG.20742' => 'ama', 'MSTRG.8134' => 'ama', 'Nitab4.5_0000096g0010' => 'nta', 'Nitab4.5_0000202g0030' => 'nta', 'Nitab4.5_0000216g0370' => 'nta', 'Nitab4.5_0000457g0230' => 'nta', 'Nitab4.5_0001702g0170' => 'nta', 'Nitab4.5_0003607g0010' => 'nta', 'Nitab4.5_0004917g0020' => 'nta', 'Nitab4.5_0007059g0010' => 'nta', 'Nitab4.5_0007184g0010' => 'nta', 'Nitab4.5_0007346g0020' => 'nta', 'Nn1g00410' => 'nnu', 'Nn1g01252' => 'nnu', 'Nn2g11168' => 'nnu', 'Nn2g13403' => 'nnu', 'Nn2g13760' => 'nnu', 'Nn4g26380' => 'nnu', 'Oeu000806.2' => 'oeu', 'Oeu005788.1' => 'oeu', 'Oeu006900.3' => 'oeu', 'Oeu007797.1' => 'oeu', 'Oeu011932.1' => 'oeu', 'Oeu022739.1' => 'oeu', 'Oeu037918.1' => 'oeu', 'Oeu055490.2' => 'oeu', 'Os01g0844400' => 'osa', 'Os02g0819100' => 'osa', 'Os03g0804300' => 'osa', 'Os05g0458000' => 'osa', 'Os07g0467800' => 'osa', 'Os12g0602200' => 'osa', 'Peaxi162Scf00013g03444' => 'pax', 'Peaxi162Scf00094g01120' => 'pax', 'Peaxi162Scf00191g01211' => 'pax', 'Peaxi162Scf00238g01110' => 'pax', 'Peaxi162Scf00330g00719' => 'pax', 'Peaxi162Scf00627g00018' => 'pax', 'PGR031G2686' => 'pgr', 'PGR042G0809' => 'pgr', 'PGR142G0193' => 'pgr', 'PGSC0003DMG400011066' => 'stu', 'PGSC0003DMG400012041' => 'stu', 'PGSC0003DMG400013678' => 'stu', 'PGSC0003DMG400023477' => 'stu', 'PGSC0003DMG400025956' => 'stu', 'PGSC0003DMG401019151' => 'stu', 'Phvul.006G116400' => 'pvu', 'Phvul.007G097300' => 'pvu', 'Phvul.010G015000' => 'pvu', 'Phvul.010G083900' => 'pvu', 'Potri.001G117100' => 'ptr', 'Potri.002G147300' => 'ptr', 'Potri.003G115600' => 'ptr', 'Potri.006G087400' => 'ptr', 'Potri.010G226100' => 'ptr', 'Potri.014G069200' => 'ptr', 'Potri.014G104000' => 'ptr', 'Potri.016G100200' => 'ptr', 'Pp3c10_20450' => 'ppa', 'Pp3c1_42400' => 'ppa', 'Pp3c3_24390' => 'ppa', 'Pp3c3_2860' => 'ppa', 'PRCOL_00003193' => 'pco', 'Prupe.2G144500' => 'ppe', 'Prupe.2G195700' => 'ppe', 'Prupe.2G209800' => 'ppe', 'Prupe.5G080000' => 'ppe', 'Prupe.6G257900' => 'ppe', 'Psat3g001160' => 'psa', 'Psat6g181880' => 'psa', 'Psat7g233720' => 'psa', 'PSO063G7587' => 'pso', 'PSO339G2145' => 'pso', 'PSO339G3369' => 'pso', 'PSO478G2747' => 'pso', 'PSO513G0140' => 'pso', 'PSO782G1614' => 'pso', 'PSO782G4889' => 'pso', 'PSO782G5485' => 'pso', 'PSO801G0241' => 'pso', 'QL07p048854' => 'qlo', 'QL08p046745' => 'qlo', 'QL08p052606' => 'qlo', 'QL08p053414' => 'qlo', 'QL08p054868' => 'qlo', 'RcHm_v2.0_Chr1g0350251' => 'rch', 'RcHm_v2.0_Chr1g0360851' => 'rch', 'RcHm_v2.0_Chr1g0362791' => 'rch', 'RcHm_v2.0_Chr3g0466281' => 'rch', 'RcHm_v2.0_Chr7g0201481' => 'rch', 'Rhsim01G0148600' => 'rsi', 'Rhsim05G0194400' => 'rsi', 'Rhsim07G0000700' => 'rsi', 'Rhsim07G0000800' => 'rsi', 'Rhsim07G0027900' => 'rsi', 'Rhsim09G0149500' => 'rsi', 'RhsimUnG0186900' => 'rsi', 'Sabra01G0089900' => 'sbr', 'Sabra02G0114700' => 'sbr', 'Sabra02G0116300' => 'sbr', 'Sabra03G0080100' => 'sbr', 'Sabra08G0024300' => 'sbr', 'Sabra10G0174300' => 'sbr', 'Sabra14G0048900' => 'sbr', 'Sabra14G0076500' => 'sbr', 'SalBow5G2513' => 'sbo', 'Sc01g0002300' => 'sci', 'Sc01g0004450' => 'sci', 'Sc06g0001680' => 'sci', 'Sc23g0003580' => 'sci', 'Sed0000913' => 'sed', 'Sed0001655' => 'sed', 'Sed0007745' => 'sed', 'Sed0010951' => 'sed', 'Sed0017599' => 'sed', 'Sed0021405' => 'sed', 'Sed0022810' => 'sed', 'SEGI_07099' => 'sgi', 'SEGI_11931' => 'sgi', 'SEGI_13187' => 'sgi', 'SEGI_29958' => 'sgi', 'SEGI_36351' => 'sgi', 'SGA_v2.0_scaffold126G33770' => 'sas', 'SGA_v2.0_scaffold153G37003' => 'sas', 'SGA_v2.0_scaffold2G01359' => 'sas', 'SGA_v2.0_scaffold5G03064' => 'sas', 'SGA_v2.0_scaffold95G28903' => 'sas', 'SHI12701' => 'shi', 'SHI26410' => 'shi', 'SHI38997' => 'shi', 'SHI53759' => 'shi', 'SHI53886' => 'shi', 'SHI54714' => 'shi', 'SMO011G0041' => 'smo', 'SMO146G0251' => 'smo', 'SMO160G0004' => 'smo', 'SMO174G0057' => 'smo', 'SMO244G0089' => 'smo', 'SMO296G0011' => 'smo', 'Solyc01g091280.3' => 'sly', 'Solyc05g047610.3' => 'sly', 'Solyc05g047640.3' => 'sly', 'Solyc05g055630.3' => 'sly', 'Solyc10g018160.2' => 'sly', 'Solyc10g084820.2' => 'sly', 'Solyc10g086565.2' => 'sly', 'Sopen01g037030' => 'spe', 'Sopen05g027920' => 'spe', 'Sopen05g034070' => 'spe', 'Sopen10g007260' => 'spe', 'Sopen10g034260' => 'spe', 'Sopen10g035950' => 'spe', 'Sp3g07710' => 'spa', 'Sp4g27420' => 'spa', 'Sp5g02450' => 'spa', 'Sp6g01280' => 'spa', 'Sp6g38480' => 'spa', 'Sp7g20780' => 'spa', 'TAR374G1413' => 'tar', 'TAR623G1777' => 'tar', 'TAR629G2370' => 'tar', 'TAR633G1759' => 'tar', 'TAR636G3387' => 'tar', 'THA.LOC104802447' => 'tha', 'THA.LOC104813916' => 'tha', 'THA.LOC104816423' => 'tha', 'THA.LOC104817246' => 'tha', 'THA.LOC104825895' => 'tha', 'Thecc.01G335200' => 'tca', 'Thecc.01G377400' => 'tca', 'Thecc.03G262200' => 'tca', 'Thecc.05G036800' => 'tca', 'Thecc.10G080500' => 'tca', 'Thecc.10G080800' => 'tca', 'Thhalv10001560m.g' => 'esa', 'Thhalv10006120m.g' => 'esa', 'Thhalv10014375m.g' => 'esa', 'Thhalv10021264m.g' => 'esa', 'Thhalv10028856m.g' => 'esa', 'TPR.G1914' => 'tpr', 'TPR.G4757' => 'tpr', 'TPR.G5595' => 'tpr', 'TWI14G0952' => 'twi', 'TWI14G1307' => 'twi', 'TWI38G2143' => 'twi', 'TWI59G0826' => 'twi', 'TWI77G0527' => 'twi', 'TWI81G0150' => 'twi', 'unitig_21.g21018' => 'ugi', 'unitig_26.g9725' => 'ugi', 'unitig_744.g24653' => 'ugi', 'unitig_749.g13778' => 'ugi', 'unitig_899.g15035' => 'ugi', 'vmacro04296' => 'vma', 'vmacro04852' => 'vma', 'vmacro13404' => 'vma', 'vmacro20169' => 'vma', 'vmacro21014' => 'vma', 'VMungo0331G0237' => 'vmu', 'VMungo0331G0706' => 'vmu', 'VMungo0331G1361' => 'vmu', 'VMungo0331G1489' => 'vmu', 'VMungo0540G1037' => 'vmu', 'VMungo0720G2487' => 'vmu', 'VMungo0720G2721' => 'vmu', 'Zm00001eb086860' => 'zma', 'Zm00001eb104760' => 'zma', 'Zm00001eb148220' => 'zma', 'Zm00001eb259030' => 'zma', 'Zm00001eb289590' => 'zma', 'Zm00001eb420150' => 'zma' ) $gf_id = 'HOM05D000968' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000968' ) $data_identifier = 'HOM05D000968' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 19, 'bol' => (int) 9, 'bra' => (int) 12, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 5, 'ccan' => (int) 7, 'cde' => (int) 5, 'cfa' => (int) 8, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 4, 'dca' => (int) 5, 'din' => (int) 5, 'dzi' => (int) 12, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 25, 'fve' => (int) 5, 'gma' => (int) 9, 'ghi' => (int) 18, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 7, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 5, 'sun' => (int) 2, 'lal' => (int) 9, 'lja' => (int) 5, 'lonja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 9, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 2, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 3, 'stu' => (int) 6, 'pvu' => (int) 4, 'ptr' => (int) 8, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 3, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 1, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 5, 'sas' => (int) 5, 'shi' => (int) 6, 'smo' => (int) 6, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 3, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420150' $species_info = array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ) $local_species = 'arhy' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000968', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p31690' => 'bna', 'A03p36040' => 'bna', 'A03p53730' => 'bna', 'A04p01410' => 'bna', 'A05p05420' => 'bna', 'A05p39630' => 'bna', 'A05p39640' => 'bna', 'A09p00970' => 'bna', 'A09p53060' => 'bna', 'A10p31890' => 'bna', 'Aa31LG10G15040' => 'aar', 'Aa31LG1G21090' => 'aar', 'Aa31LG1G26900' => 'aar', 'Aa31LG3G1820' => 'aar', 'Aa31LG5G1100' => 'aar', 'Aa31LG6G4740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2265' => 'aag', 'Actinidia07998' => 'ach', 'Actinidia11266' => 'ach', 'Actinidia12682' => 'ach', 'Actinidia26479' => 'ach', 'Actinidia31406' => 'ach', 'Actinidia32437' => 'ach', 'Actinidia38862' => 'ach', 'Ah.05g174230' => 'amhyb', 'Ah.05g179070' => 'amhyb', 'Ah.05g179090' => 'amhyb', 'Ah.12g059950' => 'amhyb', 'AL3G20480' => 'aly', 'AL4G44520' => 'aly', 'AL5G43110' => 'aly', 'AL6G13890' => 'aly', 'AL6G52620' => 'aly', 'AL7G30830' => 'aly', 'Aqoxy1G00899' => 'aox', 'Aqoxy5G04333' => 'aox', 'Aqoxy7G00641' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3IZ0NN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4EF6AW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W9P8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79GA3M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C43NQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFCU6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G95YVJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCHK29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LU1UG8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX91RN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGB4B1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8DA0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9H7JI' => 'arhy', 'AT3G09320' => 'ath', 'AT3G60800' => 'ath', 'AT4G00840' => 'ath', 'AT4G22750' => 'ath', 'AT5G04270' => 'ath', 'ATR0090G003' => 'atr', 'ATR0559G349' => 'atr', 'ATR0680G261' => 'atr', 'ATR0810G048' => 'atr', 'Atru.chr12.831' => 'acertr', 'Atru.chr5.303' => 'acertr', 'Atru.chr5.748' => 'acertr', 'Atru.chr8.1999' => 'acertr', 'Atru.chr9.1436' => 'acertr', 'AUR62004211' => 'cqu', 'AUR62004548' => 'cqu', 'AUR62013637' => 'cqu', 'AUR62022662' => 'cqu', 'AUR62025777' => 'cqu', 'AUR62042386' => 'cqu', 'BcaB01g02310' => 'bca', 'BcaB01g06062' => 'bca', 'BcaB02g08975' => 'bca', 'BcaB02g08980' => 'bca', 'BcaC01g04228' => 'bca', 'BcaC01g06830' => 'bca', 'BcaC02g10186' => 'bca', 'BcaC02g12214' => 'bca', 'BcaC04g24101' => 'bca', 'BcaC05g29520' => 'bca', 'BcaC05g29661' => 'bca', 'BcaC06g32130' => 'bca', 'BcaC06g32131' => 'bca', 'BcaC07g40601' => 'bca', 'BcaC07g42641' => 'bca', 'BcaNung01038' => 'bca', 'BcaNung01676' => 'bca', 'BcaNung02480' => 'bca', 'BcaNung07376' => 'bca', 'BolC3t16146H' => 'bol', 'BolC3t16637H' => 'bol', 'BolC4t22257H' => 'bol', 'BolC4t24728H' => 'bol', 'BolC5t34517H' => 'bol', 'BolC7t45703H' => 'bol', 'BolC8t51166H' => 'bol', 'BolC9t53038H' => 'bol', 'BolC9t60000H' => 'bol', 'BraA01t01345Z' => 'bra', 'BraA01t01346Z' => 'bra', 'BraA01t01348Z' => 'bra', 'BraA03t12347Z' => 'bra', 'BraA03t12775Z' => 'bra', 'BraA03t14439Z' => 'bra', 'BraA04t15860Z' => 'bra', 'BraA05t19511Z' => 'bra', 'BraA05t22746Z' => 'bra', 'BraA09t35767Z' => 'bra', 'BraA09t40732Z' => 'bra', 'BraA10t45233Z' => 'bra', 'C03p38720' => 'bna', 'C03p43680' => 'bna', 'C04p06350' => 'bna', 'C04p31800' => 'bna', 'C05p58680' => 'bna', 'C07p52110' => 'bna', 'C08p35760' => 'bna', 'C09p01050' => 'bna', 'C09p72600' => 'bna', 'CAN.G106.2' => 'can', 'CAN.G1482.1' => 'can', 'CAN.G324.12' => 'can', 'CAN.G388.20' => 'can', 'CAN.G412.7' => 'can', 'CAN.G694.32' => 'can', 'CAN.G92.12' => 'can', 'CANSAT11G2353' => 'cansat', 'CANSAT21G1398' => 'cansat', 'CANSAT56G2456' => 'cansat', 'CANSAT56G3031' => 'cansat', 'CANSAT56G4539' => 'cansat', 'CARHR083680' => 'chi', 'CARHR171190' => 'chi', 'CARHR209010' => 'chi', 'CARHR229680' => 'chi', 'CARHR249490' => 'chi', 'Carub.0003s0844' => 'cru', 'Carub.0005s2755' => 'cru', 'Carub.0006s0322' => 'cru', 'Carub.0006s3586' => 'cru', 'Carub.0007s1855' => 'cru', 'Ca_07808_v3' => 'car', 'Ca_09535_v3' => 'car', 'Ca_10548_v3' => 'car', 'Ca_19913_v3' => 'car', 'Ca_19916_v3' => 'car', 'Ca_19975_v3' => 'car', 'CBR_g22876' => 'cbr', 'CBR_g22879' => 'cbr', 'CBR_g38491' => 'cbr', 'CBR_g54185' => 'cbr', 'CBR_g54190' => 'cbr', 'Cc02_g11020' => 'ccan', 'Cc02_g23920' => 'ccan', 'Cc02_g39860' => 'ccan', 'Cc02_g39870' => 'ccan', 'Cc03_g06760' => 'ccan', 'Cc06_g02450' => 'ccan', 'Cc09_g09450' => 'ccan', 'CDE02G1959' => 'cde', 'CDE04G0600' => 'cde', 'CDE07G1996' => 'cde', 'CDE07G2078' => 'cde', 'CDE11G0611' => 'cde', 'Cfa001683' => 'cfa', 'Cfa001734' => 'cfa', 'Cfa001737' => 'cfa', 'Cfa003751' => 'cfa', 'Cfa012019' => 'cfa', 'Cfa017353' => 'cfa', 'Cfa017732' => 'cfa', 'Cfa022464' => 'cfa', 'Ciclev10012400m.g' => 'ccl', 'Ciclev10021242m.g' => 'ccl', 'Ciclev10021302m.g' => 'ccl', 'Ciclev10021463m.g' => 'ccl', 'Ciclev10032359m.g' => 'ccl', 'CiPaw.01G081000' => 'cil', 'CiPaw.01G262500' => 'cil', 'CiPaw.01G269800' => 'cil', 'CiPaw.02G168400' => 'cil', 'CiPaw.05G119500' => 'cil', 'CiPaw.11G147300' => 'cil', 'ClCG01G003630' => 'cla', 'ClCG05G000510' => 'cla', 'ClCG05G002300' => 'cla', 'ClCG08G007650' => 'cla', 'ClCG10G021250' => 'cla', 'COL.COLO4_06218' => 'col', 'COL.COLO4_12538' => 'col', 'COL.COLO4_14775' => 'col', 'COL.COLO4_23875' => 'col', 'Cpa.g.sc141.16' => 'cpa', 'Cpa.g.sc169.16' => 'cpa', 'Cpa.g.sc244.4' => 'cpa', 'Cpa.g.sc244.5' => 'cpa', 'Cpa.g.sc29.87' => 'cpa', 'Cpa.g.sc53.115' => 'cpa', 'Cre03.g207502' => 'cre', 'Cre06.g277000' => 'cre', 'Cre09.g394050' => 'cre', 'CsaV3_3G007680' => 'csa', 'CsaV3_3G009710' => 'csa', 'CsaV3_3G034790' => 'csa', 'CsaV3_5G003750' => 'csa', 'CsaV3_6G036620' => 'csa', 'CSS0002288' => 'camsi', 'CSS0011250' => 'camsi', 'CSS0021619' => 'camsi', 'CSS0046701' => 'camsi', 'DCAR_006420' => 'dca', 'DCAR_006865' => 'dca', 'DCAR_008558' => 'dca', 'DCAR_028754' => 'dca', 'DCAR_028755' => 'dca', 'Dinv31218' => 'din', 'Dinv32371' => 'din', 'Dinv34250' => 'din', 'Dinv37156' => 'din', 'Dinv43704' => 'din', 'Duzib093G1811' => 'dzi', 'Duzib106G1622' => 'dzi', 'Duzib114G0504' => 'dzi', 'Duzib128G0338' => 'dzi', 'Duzib128G1577' => 'dzi', 'Duzib133G0104' => 'dzi', 'Duzib133G1080' => 'dzi', 'Duzib138G0324' => 'dzi', 'Duzib138G0394' => 'dzi', 'Duzib205G0122' => 'dzi', 'Duzib268G1020' => 'dzi', 'Duzib268G1359' => 'dzi', 'ECA232G3929' => 'eca', 'ECA236G2210' => 'eca', 'ECA236G2287' => 'eca', 'ECA240G4568' => 'eca', 'ECA247G0894' => 'eca', 'EL10Ac1g00200' => 'bvu', 'EL10Ac1g00886' => 'bvu', 'EL10As1g23091' => 'bvu', 'EL10As1g23092' => 'bvu', 'Eucgr.A01284' => 'egr', 'Eucgr.A01285' => 'egr', 'Eucgr.D02456' => 'egr', 'Eucgr.E00018' => 'egr', 'Eucgr.E01439' => 'egr', 'Eucgr.G02859' => 'egr', 'FAN01G0168' => 'fan', 'FAN01G0453' => 'fan', 'FAN01G2761' => 'fan', 'FAN02G1239' => 'fan', 'FAN03G0645' => 'fan', 'FAN03G2707' => 'fan', 'FAN03G2978' => 'fan', 'FAN04G0227' => 'fan', 'FAN06G0091' => 'fan', 'FAN06G1418' => 'fan', 'FAN06G1512' => 'fan', 'FAN06G1986' => 'fan', 'FAN06G2905' => 'fan', 'FAN06G4325' => 'fan', 'FAN08G0033' => 'fan', 'FAN09G0642' => 'fan', 'FAN10G1763' => 'fan', 'FAN10G2026' => 'fan', 'FAN10G2513' => 'fan', 'FAN10G3402' => 'fan', 'FAN10G3564' => 'fan', 'FAN10G3987' => 'fan', 'FAN13G1490' => 'fan', 'FAN14G5857' => 'fan', 'FAN18G1188' => 'fan', 'FvH4_5g00750' => 'fve', 'FvH4_6g13410' => 'fve', 'FvH4_7g11740' => 'fve', 'FvH4_7g17410' => 'fve', 'FvH4_7g18860' => 'fve', 'Glyma.01G099100' => 'gma', 'Glyma.01G142300' => 'gma', 'Glyma.03G025500' => 'gma', 'Glyma.03G069700' => 'gma', 'Glyma.03G260000' => 'gma', 'Glyma.09G269800' => 'gma', 'Glyma.10G208700' => 'gma', 'Glyma.18G220400' => 'gma', 'Glyma.20G182000' => 'gma', 'Gohir.A01G221726' => 'ghi', 'Gohir.A07G134600' => 'ghi', 'Gohir.A07G146000' => 'ghi', 'Gohir.A08G173900' => 'ghi', 'Gohir.A09G194900' => 'ghi', 'Gohir.A10G204100' => 'ghi', 'Gohir.A11G080600' => 'ghi', 'Gohir.A11G327500' => 'ghi', 'Gohir.A12G101800' => 'ghi', 'Gohir.D01G211200' => 'ghi', 'Gohir.D07G139200' => 'ghi', 'Gohir.D07G152100' => 'ghi', 'Gohir.D08G192600' => 'ghi', 'Gohir.D09G189200' => 'ghi', 'Gohir.D10G212000' => 'ghi', 'Gohir.D11G085200' => 'ghi', 'Gohir.D11G346400' => 'ghi', 'Gohir.D12G104800' => 'ghi', 'Gorai.001G151300' => 'gra', 'Gorai.001G174100' => 'gra', 'Gorai.002G257000' => 'gra', 'Gorai.004G202600' => 'gra', 'Gorai.007G090900' => 'gra', 'Gorai.007G376700' => 'gra', 'Gorai.008G114100' => 'gra', 'Gorai.011G237900' => 'gra', 'GSVIVG01005450001' => 'vvi', 'GSVIVG01016232001' => 'vvi', 'GSVIVG01026157001' => 'vvi', 'GSVIVG01027419001' => 'vvi', 'GSVIVG01027631001' => 'vvi', 'GSVIVG01034143001' => 'vvi', 'HanXRQChr03g0093921' => 'han', 'HanXRQChr04g0120001' => 'han', 'HanXRQChr04g0122561' => 'han', 'HanXRQChr09g0246851' => 'han', 'HanXRQChr10g0293311' => 'han', 'HanXRQChr13g0425231' => 'han', 'HanXRQChr16g0532571' => 'han', 'Haze_09050' => 'cav', 'Haze_15715' => 'cav', 'Haze_15716' => 'cav', 'Haze_16803' => 'cav', 'Haze_16850' => 'cav', 'Hma1.2p1_0301F.1_g118655' => 'hma', 'Hma1.2p1_0309F.1_g120590' => 'hma', 'Hma1.2p1_0936F.1_g238900' => 'hma', 'Hma1.2p1_3552F.1_g336740' => 'hma', 'HPP92_003520' => 'vpl', 'HPP92_006628' => 'vpl', 'HPP92_006645' => 'vpl', 'HPP92_014669' => 'vpl', 'HPP92_015077' => 'vpl', 'Hund16742' => 'sun', 'Hund17022' => 'sun', 'Lalb_Chr02g0152131' => 'lal', 'Lalb_Chr05g0225371' => 'lal', 'Lalb_Chr07g0189841' => 'lal', 'Lalb_Chr07g0192961' => 'lal', 'Lalb_Chr12g0208221' => 'lal', 'Lalb_Chr13g0291211' => 'lal', 'Lalb_Chr13g0291781' => 'lal', 'Lalb_Chr18g0044651' => 'lal', 'Lalb_Chr21g0313731' => 'lal', 'Lj1g0022533' => 'lja', 'Lj2A18T50' => 'lonja', 'Lj2A92G93' => 'lonja', 'Lj3A965T73' => 'lonja', 'Lj3g0000673' => 'lja', 'Lj3g0002666' => 'lja', 'Lj4g0016985' => 'lja', 'Lj5g0003625' => 'lja', 'Lj7A529G36' => 'lonja', 'Lj9A569T49' => 'lonja', 'Lj9A604T63' => 'lonja', 'Lsat_1_v5_gn_3_132060' => 'lsa', 'Lsat_1_v5_gn_4_68941' => 'lsa', 'Lsat_1_v5_gn_5_95580' => 'lsa', 'Lsat_1_v5_gn_7_161' => 'lsa', 'Lsat_1_v5_gn_7_7041' => 'lsa', 'Lsat_1_v5_gn_9_33481' => 'lsa', 'Lsat_1_v5_gn_9_68260' => 'lsa', 'Manes.01G073100' => 'mes', 'Manes.01G266300' => 'mes', 'Manes.02G033300' => 'mes', 'Manes.05G017900' => 'mes', 'Manes.05G046100' => 'mes', 'Manes.08G080900' => 'mes', 'Manes.10G049400' => 'mes', 'Mapoly0009s0186' => 'mpo', 'Mapoly0036s0118' => 'mpo', 'Mapoly0101s0046' => 'mpo', 'MBI04_g30218_MAGBIO' => 'mbi', 'MBI04_g35564_MAGBIO' => 'mbi', 'MBI12_g34011_MAGBIO' => 'mbi', 'MBI14_g04655_MAGBIO' => 'mbi', 'MCO07G653' => 'mco', 'MCO10G173' => 'mco', 'MD01G1087100' => 'mdo', 'MD01G1104200' => 'mdo', 'MD02G1205100' => 'mdo', 'MD04G1079200' => 'mdo', 'MD04G1131400' => 'mdo', 'MD07G1121600' => 'mdo', 'MD07G1157300' => 'mdo', 'MD07G1171000' => 'mdo', 'MD12G1144500' => 'mdo', 'Medtr1g094610' => 'mtr', 'Medtr4g021795' => 'mtr', 'Medtr4g023760' => 'mtr', 'Medtr7g118050' => 'mtr', 'MELO3C005582.2' => 'cme', 'MELO3C005989.2' => 'cme', 'MELO3C006192.2' => 'cme', 'MELO3C009248.2' => 'cme', 'MELO3C019817.2' => 'cme', 'Migut.B01625' => 'egut', 'Migut.B01915' => 'egut', 'Migut.F01721' => 'egut', 'Migut.J00314' => 'egut', 'MSTRG.20742' => 'ama', 'MSTRG.8134' => 'ama', 'Nitab4.5_0000096g0010' => 'nta', 'Nitab4.5_0000202g0030' => 'nta', 'Nitab4.5_0000216g0370' => 'nta', 'Nitab4.5_0000457g0230' => 'nta', 'Nitab4.5_0001702g0170' => 'nta', 'Nitab4.5_0003607g0010' => 'nta', 'Nitab4.5_0004917g0020' => 'nta', 'Nitab4.5_0007059g0010' => 'nta', 'Nitab4.5_0007184g0010' => 'nta', 'Nitab4.5_0007346g0020' => 'nta', 'Nn1g00410' => 'nnu', 'Nn1g01252' => 'nnu', 'Nn2g11168' => 'nnu', 'Nn2g13403' => 'nnu', 'Nn2g13760' => 'nnu', 'Nn4g26380' => 'nnu', 'Oeu000806.2' => 'oeu', 'Oeu005788.1' => 'oeu', 'Oeu006900.3' => 'oeu', 'Oeu007797.1' => 'oeu', 'Oeu011932.1' => 'oeu', 'Oeu022739.1' => 'oeu', 'Oeu037918.1' => 'oeu', 'Oeu055490.2' => 'oeu', 'Os01g0844400' => 'osa', 'Os02g0819100' => 'osa', 'Os03g0804300' => 'osa', 'Os05g0458000' => 'osa', 'Os07g0467800' => 'osa', 'Os12g0602200' => 'osa', 'Peaxi162Scf00013g03444' => 'pax', 'Peaxi162Scf00094g01120' => 'pax', 'Peaxi162Scf00191g01211' => 'pax', 'Peaxi162Scf00238g01110' => 'pax', 'Peaxi162Scf00330g00719' => 'pax', 'Peaxi162Scf00627g00018' => 'pax', 'PGR031G2686' => 'pgr', 'PGR042G0809' => 'pgr', 'PGR142G0193' => 'pgr', 'PGSC0003DMG400011066' => 'stu', 'PGSC0003DMG400012041' => 'stu', 'PGSC0003DMG400013678' => 'stu', 'PGSC0003DMG400023477' => 'stu', 'PGSC0003DMG400025956' => 'stu', 'PGSC0003DMG401019151' => 'stu', 'Phvul.006G116400' => 'pvu', 'Phvul.007G097300' => 'pvu', 'Phvul.010G015000' => 'pvu', 'Phvul.010G083900' => 'pvu', 'Potri.001G117100' => 'ptr', 'Potri.002G147300' => 'ptr', 'Potri.003G115600' => 'ptr', 'Potri.006G087400' => 'ptr', 'Potri.010G226100' => 'ptr', 'Potri.014G069200' => 'ptr', 'Potri.014G104000' => 'ptr', 'Potri.016G100200' => 'ptr', 'Pp3c10_20450' => 'ppa', 'Pp3c1_42400' => 'ppa', 'Pp3c3_24390' => 'ppa', 'Pp3c3_2860' => 'ppa', 'PRCOL_00003193' => 'pco', 'Prupe.2G144500' => 'ppe', 'Prupe.2G195700' => 'ppe', 'Prupe.2G209800' => 'ppe', 'Prupe.5G080000' => 'ppe', 'Prupe.6G257900' => 'ppe', 'Psat3g001160' => 'psa', 'Psat6g181880' => 'psa', 'Psat7g233720' => 'psa', 'PSO063G7587' => 'pso', 'PSO339G2145' => 'pso', 'PSO339G3369' => 'pso', 'PSO478G2747' => 'pso', 'PSO513G0140' => 'pso', 'PSO782G1614' => 'pso', 'PSO782G4889' => 'pso', 'PSO782G5485' => 'pso', 'PSO801G0241' => 'pso', 'QL07p048854' => 'qlo', 'QL08p046745' => 'qlo', 'QL08p052606' => 'qlo', 'QL08p053414' => 'qlo', 'QL08p054868' => 'qlo', 'RcHm_v2.0_Chr1g0350251' => 'rch', 'RcHm_v2.0_Chr1g0360851' => 'rch', 'RcHm_v2.0_Chr1g0362791' => 'rch', 'RcHm_v2.0_Chr3g0466281' => 'rch', 'RcHm_v2.0_Chr7g0201481' => 'rch', 'Rhsim01G0148600' => 'rsi', 'Rhsim05G0194400' => 'rsi', 'Rhsim07G0000700' => 'rsi', 'Rhsim07G0000800' => 'rsi', 'Rhsim07G0027900' => 'rsi', 'Rhsim09G0149500' => 'rsi', 'RhsimUnG0186900' => 'rsi', 'Sabra01G0089900' => 'sbr', 'Sabra02G0114700' => 'sbr', 'Sabra02G0116300' => 'sbr', 'Sabra03G0080100' => 'sbr', 'Sabra08G0024300' => 'sbr', 'Sabra10G0174300' => 'sbr', 'Sabra14G0048900' => 'sbr', 'Sabra14G0076500' => 'sbr', 'SalBow5G2513' => 'sbo', 'Sc01g0002300' => 'sci', 'Sc01g0004450' => 'sci', 'Sc06g0001680' => 'sci', 'Sc23g0003580' => 'sci', 'Sed0000913' => 'sed', 'Sed0001655' => 'sed', 'Sed0007745' => 'sed', 'Sed0010951' => 'sed', 'Sed0017599' => 'sed', 'Sed0021405' => 'sed', 'Sed0022810' => 'sed', 'SEGI_07099' => 'sgi', 'SEGI_11931' => 'sgi', 'SEGI_13187' => 'sgi', 'SEGI_29958' => 'sgi', 'SEGI_36351' => 'sgi', 'SGA_v2.0_scaffold126G33770' => 'sas', 'SGA_v2.0_scaffold153G37003' => 'sas', 'SGA_v2.0_scaffold2G01359' => 'sas', 'SGA_v2.0_scaffold5G03064' => 'sas', 'SGA_v2.0_scaffold95G28903' => 'sas', 'SHI12701' => 'shi', 'SHI26410' => 'shi', 'SHI38997' => 'shi', 'SHI53759' => 'shi', 'SHI53886' => 'shi', 'SHI54714' => 'shi', 'SMO011G0041' => 'smo', 'SMO146G0251' => 'smo', 'SMO160G0004' => 'smo', 'SMO174G0057' => 'smo', 'SMO244G0089' => 'smo', 'SMO296G0011' => 'smo', 'Solyc01g091280.3' => 'sly', 'Solyc05g047610.3' => 'sly', 'Solyc05g047640.3' => 'sly', 'Solyc05g055630.3' => 'sly', 'Solyc10g018160.2' => 'sly', 'Solyc10g084820.2' => 'sly', 'Solyc10g086565.2' => 'sly', 'Sopen01g037030' => 'spe', 'Sopen05g027920' => 'spe', 'Sopen05g034070' => 'spe', 'Sopen10g007260' => 'spe', 'Sopen10g034260' => 'spe', 'Sopen10g035950' => 'spe', 'Sp3g07710' => 'spa', 'Sp4g27420' => 'spa', 'Sp5g02450' => 'spa', 'Sp6g01280' => 'spa', 'Sp6g38480' => 'spa', 'Sp7g20780' => 'spa', 'TAR374G1413' => 'tar', 'TAR623G1777' => 'tar', 'TAR629G2370' => 'tar', 'TAR633G1759' => 'tar', 'TAR636G3387' => 'tar', 'THA.LOC104802447' => 'tha', 'THA.LOC104813916' => 'tha', 'THA.LOC104816423' => 'tha', 'THA.LOC104817246' => 'tha', 'THA.LOC104825895' => 'tha', 'Thecc.01G335200' => 'tca', 'Thecc.01G377400' => 'tca', 'Thecc.03G262200' => 'tca', 'Thecc.05G036800' => 'tca', 'Thecc.10G080500' => 'tca', 'Thecc.10G080800' => 'tca', 'Thhalv10001560m.g' => 'esa', 'Thhalv10006120m.g' => 'esa', 'Thhalv10014375m.g' => 'esa', 'Thhalv10021264m.g' => 'esa', 'Thhalv10028856m.g' => 'esa', 'TPR.G1914' => 'tpr', 'TPR.G4757' => 'tpr', 'TPR.G5595' => 'tpr', 'TWI14G0952' => 'twi', 'TWI14G1307' => 'twi', 'TWI38G2143' => 'twi', 'TWI59G0826' => 'twi', 'TWI77G0527' => 'twi', 'TWI81G0150' => 'twi', 'unitig_21.g21018' => 'ugi', 'unitig_26.g9725' => 'ugi', 'unitig_744.g24653' => 'ugi', 'unitig_749.g13778' => 'ugi', 'unitig_899.g15035' => 'ugi', 'vmacro04296' => 'vma', 'vmacro04852' => 'vma', 'vmacro13404' => 'vma', 'vmacro20169' => 'vma', 'vmacro21014' => 'vma', 'VMungo0331G0237' => 'vmu', 'VMungo0331G0706' => 'vmu', 'VMungo0331G1361' => 'vmu', 'VMungo0331G1489' => 'vmu', 'VMungo0540G1037' => 'vmu', 'VMungo0720G2487' => 'vmu', 'VMungo0720G2721' => 'vmu', 'Zm00001eb086860' => 'zma', 'Zm00001eb104760' => 'zma', 'Zm00001eb148220' => 'zma', 'Zm00001eb259030' => 'zma', 'Zm00001eb289590' => 'zma', 'Zm00001eb420150' => 'zma' ), 'gf_id' => 'HOM05D000968', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000968' ), 'data_identifier' => 'HOM05D000968', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000968', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p31690' => 'bna', 'A03p36040' => 'bna', 'A03p53730' => 'bna', 'A04p01410' => 'bna', 'A05p05420' => 'bna', 'A05p39630' => 'bna', 'A05p39640' => 'bna', 'A09p00970' => 'bna', 'A09p53060' => 'bna', 'A10p31890' => 'bna', 'Aa31LG10G15040' => 'aar', 'Aa31LG1G21090' => 'aar', 'Aa31LG1G26900' => 'aar', 'Aa31LG3G1820' => 'aar', 'Aa31LG5G1100' => 'aar', 'Aa31LG6G4740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2265' => 'aag', 'Actinidia07998' => 'ach', 'Actinidia11266' => 'ach', 'Actinidia12682' => 'ach', 'Actinidia26479' => 'ach', 'Actinidia31406' => 'ach', 'Actinidia32437' => 'ach', 'Actinidia38862' => 'ach', 'Ah.05g174230' => 'amhyb', 'Ah.05g179070' => 'amhyb', 'Ah.05g179090' => 'amhyb', 'Ah.12g059950' => 'amhyb', 'AL3G20480' => 'aly', 'AL4G44520' => 'aly', 'AL5G43110' => 'aly', 'AL6G13890' => 'aly', 'AL6G52620' => 'aly', 'AL7G30830' => 'aly', 'Aqoxy1G00899' => 'aox', 'Aqoxy5G04333' => 'aox', 'Aqoxy7G00641' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3IZ0NN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4EF6AW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W9P8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79GA3M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C43NQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFCU6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G95YVJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCHK29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LU1UG8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX91RN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGB4B1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8DA0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9H7JI' => 'arhy', 'AT3G09320' => 'ath', 'AT3G60800' => 'ath', 'AT4G00840' => 'ath', 'AT4G22750' => 'ath', 'AT5G04270' => 'ath', 'ATR0090G003' => 'atr', 'ATR0559G349' => 'atr', 'ATR0680G261' => 'atr', 'ATR0810G048' => 'atr', 'Atru.chr12.831' => 'acertr', 'Atru.chr5.303' => 'acertr', 'Atru.chr5.748' => 'acertr', 'Atru.chr8.1999' => 'acertr', 'Atru.chr9.1436' => 'acertr', 'AUR62004211' => 'cqu', 'AUR62004548' => 'cqu', 'AUR62013637' => 'cqu', 'AUR62022662' => 'cqu', 'AUR62025777' => 'cqu', 'AUR62042386' => 'cqu', 'BcaB01g02310' => 'bca', 'BcaB01g06062' => 'bca', 'BcaB02g08975' => 'bca', 'BcaB02g08980' => 'bca', 'BcaC01g04228' => 'bca', 'BcaC01g06830' => 'bca', 'BcaC02g10186' => 'bca', 'BcaC02g12214' => 'bca', 'BcaC04g24101' => 'bca', 'BcaC05g29520' => 'bca', 'BcaC05g29661' => 'bca', 'BcaC06g32130' => 'bca', 'BcaC06g32131' => 'bca', 'BcaC07g40601' => 'bca', 'BcaC07g42641' => 'bca', 'BcaNung01038' => 'bca', 'BcaNung01676' => 'bca', 'BcaNung02480' => 'bca', 'BcaNung07376' => 'bca', 'BolC3t16146H' => 'bol', 'BolC3t16637H' => 'bol', 'BolC4t22257H' => 'bol', 'BolC4t24728H' => 'bol', 'BolC5t34517H' => 'bol', 'BolC7t45703H' => 'bol', 'BolC8t51166H' => 'bol', 'BolC9t53038H' => 'bol', 'BolC9t60000H' => 'bol', 'BraA01t01345Z' => 'bra', 'BraA01t01346Z' => 'bra', 'BraA01t01348Z' => 'bra', 'BraA03t12347Z' => 'bra', 'BraA03t12775Z' => 'bra', 'BraA03t14439Z' => 'bra', 'BraA04t15860Z' => 'bra', 'BraA05t19511Z' => 'bra', 'BraA05t22746Z' => 'bra', 'BraA09t35767Z' => 'bra', 'BraA09t40732Z' => 'bra', 'BraA10t45233Z' => 'bra', 'C03p38720' => 'bna', 'C03p43680' => 'bna', 'C04p06350' => 'bna', 'C04p31800' => 'bna', 'C05p58680' => 'bna', 'C07p52110' => 'bna', 'C08p35760' => 'bna', 'C09p01050' => 'bna', 'C09p72600' => 'bna', 'CAN.G106.2' => 'can', 'CAN.G1482.1' => 'can', 'CAN.G324.12' => 'can', 'CAN.G388.20' => 'can', 'CAN.G412.7' => 'can', 'CAN.G694.32' => 'can', 'CAN.G92.12' => 'can', 'CANSAT11G2353' => 'cansat', 'CANSAT21G1398' => 'cansat', 'CANSAT56G2456' => 'cansat', 'CANSAT56G3031' => 'cansat', 'CANSAT56G4539' => 'cansat', 'CARHR083680' => 'chi', 'CARHR171190' => 'chi', 'CARHR209010' => 'chi', 'CARHR229680' => 'chi', 'CARHR249490' => 'chi', 'Carub.0003s0844' => 'cru', 'Carub.0005s2755' => 'cru', 'Carub.0006s0322' => 'cru', 'Carub.0006s3586' => 'cru', 'Carub.0007s1855' => 'cru', 'Ca_07808_v3' => 'car', 'Ca_09535_v3' => 'car', 'Ca_10548_v3' => 'car', 'Ca_19913_v3' => 'car', 'Ca_19916_v3' => 'car', 'Ca_19975_v3' => 'car', 'CBR_g22876' => 'cbr', 'CBR_g22879' => 'cbr', 'CBR_g38491' => 'cbr', 'CBR_g54185' => 'cbr', 'CBR_g54190' => 'cbr', 'Cc02_g11020' => 'ccan', 'Cc02_g23920' => 'ccan', 'Cc02_g39860' => 'ccan', 'Cc02_g39870' => 'ccan', 'Cc03_g06760' => 'ccan', 'Cc06_g02450' => 'ccan', 'Cc09_g09450' => 'ccan', 'CDE02G1959' => 'cde', 'CDE04G0600' => 'cde', 'CDE07G1996' => 'cde', 'CDE07G2078' => 'cde', 'CDE11G0611' => 'cde', 'Cfa001683' => 'cfa', 'Cfa001734' => 'cfa', 'Cfa001737' => 'cfa', 'Cfa003751' => 'cfa', 'Cfa012019' => 'cfa', 'Cfa017353' => 'cfa', 'Cfa017732' => 'cfa', 'Cfa022464' => 'cfa', 'Ciclev10012400m.g' => 'ccl', 'Ciclev10021242m.g' => 'ccl', 'Ciclev10021302m.g' => 'ccl', 'Ciclev10021463m.g' => 'ccl', 'Ciclev10032359m.g' => 'ccl', 'CiPaw.01G081000' => 'cil', 'CiPaw.01G262500' => 'cil', 'CiPaw.01G269800' => 'cil', 'CiPaw.02G168400' => 'cil', 'CiPaw.05G119500' => 'cil', 'CiPaw.11G147300' => 'cil', 'ClCG01G003630' => 'cla', 'ClCG05G000510' => 'cla', 'ClCG05G002300' => 'cla', 'ClCG08G007650' => 'cla', 'ClCG10G021250' => 'cla', 'COL.COLO4_06218' => 'col', 'COL.COLO4_12538' => 'col', 'COL.COLO4_14775' => 'col', 'COL.COLO4_23875' => 'col', 'Cpa.g.sc141.16' => 'cpa', 'Cpa.g.sc169.16' => 'cpa', 'Cpa.g.sc244.4' => 'cpa', 'Cpa.g.sc244.5' => 'cpa', 'Cpa.g.sc29.87' => 'cpa', 'Cpa.g.sc53.115' => 'cpa', 'Cre03.g207502' => 'cre', 'Cre06.g277000' => 'cre', 'Cre09.g394050' => 'cre', 'CsaV3_3G007680' => 'csa', 'CsaV3_3G009710' => 'csa', 'CsaV3_3G034790' => 'csa', 'CsaV3_5G003750' => 'csa', 'CsaV3_6G036620' => 'csa', 'CSS0002288' => 'camsi', 'CSS0011250' => 'camsi', 'CSS0021619' => 'camsi', 'CSS0046701' => 'camsi', 'DCAR_006420' => 'dca', 'DCAR_006865' => 'dca', 'DCAR_008558' => 'dca', 'DCAR_028754' => 'dca', 'DCAR_028755' => 'dca', 'Dinv31218' => 'din', 'Dinv32371' => 'din', 'Dinv34250' => 'din', 'Dinv37156' => 'din', 'Dinv43704' => 'din', 'Duzib093G1811' => 'dzi', 'Duzib106G1622' => 'dzi', 'Duzib114G0504' => 'dzi', 'Duzib128G0338' => 'dzi', 'Duzib128G1577' => 'dzi', 'Duzib133G0104' => 'dzi', 'Duzib133G1080' => 'dzi', 'Duzib138G0324' => 'dzi', 'Duzib138G0394' => 'dzi', 'Duzib205G0122' => 'dzi', 'Duzib268G1020' => 'dzi', 'Duzib268G1359' => 'dzi', 'ECA232G3929' => 'eca', 'ECA236G2210' => 'eca', 'ECA236G2287' => 'eca', 'ECA240G4568' => 'eca', 'ECA247G0894' => 'eca', 'EL10Ac1g00200' => 'bvu', 'EL10Ac1g00886' => 'bvu', 'EL10As1g23091' => 'bvu', 'EL10As1g23092' => 'bvu', 'Eucgr.A01284' => 'egr', 'Eucgr.A01285' => 'egr', 'Eucgr.D02456' => 'egr', 'Eucgr.E00018' => 'egr', 'Eucgr.E01439' => 'egr', 'Eucgr.G02859' => 'egr', 'FAN01G0168' => 'fan', 'FAN01G0453' => 'fan', 'FAN01G2761' => 'fan', 'FAN02G1239' => 'fan', 'FAN03G0645' => 'fan', 'FAN03G2707' => 'fan', 'FAN03G2978' => 'fan', 'FAN04G0227' => 'fan', 'FAN06G0091' => 'fan', 'FAN06G1418' => 'fan', 'FAN06G1512' => 'fan', 'FAN06G1986' => 'fan', 'FAN06G2905' => 'fan', 'FAN06G4325' => 'fan', 'FAN08G0033' => 'fan', 'FAN09G0642' => 'fan', 'FAN10G1763' => 'fan', 'FAN10G2026' => 'fan', 'FAN10G2513' => 'fan', 'FAN10G3402' => 'fan', 'FAN10G3564' => 'fan', 'FAN10G3987' => 'fan', 'FAN13G1490' => 'fan', 'FAN14G5857' => 'fan', 'FAN18G1188' => 'fan', 'FvH4_5g00750' => 'fve', 'FvH4_6g13410' => 'fve', 'FvH4_7g11740' => 'fve', 'FvH4_7g17410' => 'fve', 'FvH4_7g18860' => 'fve', 'Glyma.01G099100' => 'gma', 'Glyma.01G142300' => 'gma', 'Glyma.03G025500' => 'gma', 'Glyma.03G069700' => 'gma', 'Glyma.03G260000' => 'gma', 'Glyma.09G269800' => 'gma', 'Glyma.10G208700' => 'gma', 'Glyma.18G220400' => 'gma', 'Glyma.20G182000' => 'gma', 'Gohir.A01G221726' => 'ghi', 'Gohir.A07G134600' => 'ghi', 'Gohir.A07G146000' => 'ghi', 'Gohir.A08G173900' => 'ghi', 'Gohir.A09G194900' => 'ghi', 'Gohir.A10G204100' => 'ghi', 'Gohir.A11G080600' => 'ghi', 'Gohir.A11G327500' => 'ghi', 'Gohir.A12G101800' => 'ghi', 'Gohir.D01G211200' => 'ghi', 'Gohir.D07G139200' => 'ghi', 'Gohir.D07G152100' => 'ghi', 'Gohir.D08G192600' => 'ghi', 'Gohir.D09G189200' => 'ghi', 'Gohir.D10G212000' => 'ghi', 'Gohir.D11G085200' => 'ghi', 'Gohir.D11G346400' => 'ghi', 'Gohir.D12G104800' => 'ghi', 'Gorai.001G151300' => 'gra', 'Gorai.001G174100' => 'gra', 'Gorai.002G257000' => 'gra', 'Gorai.004G202600' => 'gra', 'Gorai.007G090900' => 'gra', 'Gorai.007G376700' => 'gra', 'Gorai.008G114100' => 'gra', 'Gorai.011G237900' => 'gra', 'GSVIVG01005450001' => 'vvi', 'GSVIVG01016232001' => 'vvi', 'GSVIVG01026157001' => 'vvi', 'GSVIVG01027419001' => 'vvi', 'GSVIVG01027631001' => 'vvi', 'GSVIVG01034143001' => 'vvi', 'HanXRQChr03g0093921' => 'han', 'HanXRQChr04g0120001' => 'han', 'HanXRQChr04g0122561' => 'han', 'HanXRQChr09g0246851' => 'han', 'HanXRQChr10g0293311' => 'han', 'HanXRQChr13g0425231' => 'han', 'HanXRQChr16g0532571' => 'han', 'Haze_09050' => 'cav', 'Haze_15715' => 'cav', 'Haze_15716' => 'cav', 'Haze_16803' => 'cav', 'Haze_16850' => 'cav', 'Hma1.2p1_0301F.1_g118655' => 'hma', 'Hma1.2p1_0309F.1_g120590' => 'hma', 'Hma1.2p1_0936F.1_g238900' => 'hma', 'Hma1.2p1_3552F.1_g336740' => 'hma', 'HPP92_003520' => 'vpl', 'HPP92_006628' => 'vpl', 'HPP92_006645' => 'vpl', 'HPP92_014669' => 'vpl', 'HPP92_015077' => 'vpl', 'Hund16742' => 'sun', 'Hund17022' => 'sun', 'Lalb_Chr02g0152131' => 'lal', 'Lalb_Chr05g0225371' => 'lal', 'Lalb_Chr07g0189841' => 'lal', 'Lalb_Chr07g0192961' => 'lal', 'Lalb_Chr12g0208221' => 'lal', 'Lalb_Chr13g0291211' => 'lal', 'Lalb_Chr13g0291781' => 'lal', 'Lalb_Chr18g0044651' => 'lal', 'Lalb_Chr21g0313731' => 'lal', 'Lj1g0022533' => 'lja', 'Lj2A18T50' => 'lonja', 'Lj2A92G93' => 'lonja', 'Lj3A965T73' => 'lonja', 'Lj3g0000673' => 'lja', 'Lj3g0002666' => 'lja', 'Lj4g0016985' => 'lja', 'Lj5g0003625' => 'lja', 'Lj7A529G36' => 'lonja', 'Lj9A569T49' => 'lonja', 'Lj9A604T63' => 'lonja', 'Lsat_1_v5_gn_3_132060' => 'lsa', 'Lsat_1_v5_gn_4_68941' => 'lsa', 'Lsat_1_v5_gn_5_95580' => 'lsa', 'Lsat_1_v5_gn_7_161' => 'lsa', 'Lsat_1_v5_gn_7_7041' => 'lsa', 'Lsat_1_v5_gn_9_33481' => 'lsa', 'Lsat_1_v5_gn_9_68260' => 'lsa', 'Manes.01G073100' => 'mes', 'Manes.01G266300' => 'mes', 'Manes.02G033300' => 'mes', 'Manes.05G017900' => 'mes', 'Manes.05G046100' => 'mes', 'Manes.08G080900' => 'mes', 'Manes.10G049400' => 'mes', 'Mapoly0009s0186' => 'mpo', 'Mapoly0036s0118' => 'mpo', 'Mapoly0101s0046' => 'mpo', 'MBI04_g30218_MAGBIO' => 'mbi', 'MBI04_g35564_MAGBIO' => 'mbi', 'MBI12_g34011_MAGBIO' => 'mbi', 'MBI14_g04655_MAGBIO' => 'mbi', 'MCO07G653' => 'mco', 'MCO10G173' => 'mco', 'MD01G1087100' => 'mdo', 'MD01G1104200' => 'mdo', 'MD02G1205100' => 'mdo', 'MD04G1079200' => 'mdo', 'MD04G1131400' => 'mdo', 'MD07G1121600' => 'mdo', 'MD07G1157300' => 'mdo', 'MD07G1171000' => 'mdo', 'MD12G1144500' => 'mdo', 'Medtr1g094610' => 'mtr', 'Medtr4g021795' => 'mtr', 'Medtr4g023760' => 'mtr', 'Medtr7g118050' => 'mtr', 'MELO3C005582.2' => 'cme', 'MELO3C005989.2' => 'cme', 'MELO3C006192.2' => 'cme', 'MELO3C009248.2' => 'cme', 'MELO3C019817.2' => 'cme', 'Migut.B01625' => 'egut', 'Migut.B01915' => 'egut', 'Migut.F01721' => 'egut', 'Migut.J00314' => 'egut', 'MSTRG.20742' => 'ama', 'MSTRG.8134' => 'ama', 'Nitab4.5_0000096g0010' => 'nta', 'Nitab4.5_0000202g0030' => 'nta', 'Nitab4.5_0000216g0370' => 'nta', 'Nitab4.5_0000457g0230' => 'nta', 'Nitab4.5_0001702g0170' => 'nta', 'Nitab4.5_0003607g0010' => 'nta', 'Nitab4.5_0004917g0020' => 'nta', 'Nitab4.5_0007059g0010' => 'nta', 'Nitab4.5_0007184g0010' => 'nta', 'Nitab4.5_0007346g0020' => 'nta', 'Nn1g00410' => 'nnu', 'Nn1g01252' => 'nnu', 'Nn2g11168' => 'nnu', 'Nn2g13403' => 'nnu', 'Nn2g13760' => 'nnu', 'Nn4g26380' => 'nnu', 'Oeu000806.2' => 'oeu', 'Oeu005788.1' => 'oeu', 'Oeu006900.3' => 'oeu', 'Oeu007797.1' => 'oeu', 'Oeu011932.1' => 'oeu', 'Oeu022739.1' => 'oeu', 'Oeu037918.1' => 'oeu', 'Oeu055490.2' => 'oeu', 'Os01g0844400' => 'osa', 'Os02g0819100' => 'osa', 'Os03g0804300' => 'osa', 'Os05g0458000' => 'osa', 'Os07g0467800' => 'osa', 'Os12g0602200' => 'osa', 'Peaxi162Scf00013g03444' => 'pax', 'Peaxi162Scf00094g01120' => 'pax', 'Peaxi162Scf00191g01211' => 'pax', 'Peaxi162Scf00238g01110' => 'pax', 'Peaxi162Scf00330g00719' => 'pax', 'Peaxi162Scf00627g00018' => 'pax', 'PGR031G2686' => 'pgr', 'PGR042G0809' => 'pgr', 'PGR142G0193' => 'pgr', 'PGSC0003DMG400011066' => 'stu', 'PGSC0003DMG400012041' => 'stu', 'PGSC0003DMG400013678' => 'stu', 'PGSC0003DMG400023477' => 'stu', 'PGSC0003DMG400025956' => 'stu', 'PGSC0003DMG401019151' => 'stu', 'Phvul.006G116400' => 'pvu', 'Phvul.007G097300' => 'pvu', 'Phvul.010G015000' => 'pvu', 'Phvul.010G083900' => 'pvu', 'Potri.001G117100' => 'ptr', 'Potri.002G147300' => 'ptr', 'Potri.003G115600' => 'ptr', 'Potri.006G087400' => 'ptr', 'Potri.010G226100' => 'ptr', 'Potri.014G069200' => 'ptr', 'Potri.014G104000' => 'ptr', 'Potri.016G100200' => 'ptr', 'Pp3c10_20450' => 'ppa', 'Pp3c1_42400' => 'ppa', 'Pp3c3_24390' => 'ppa', 'Pp3c3_2860' => 'ppa', 'PRCOL_00003193' => 'pco', 'Prupe.2G144500' => 'ppe', 'Prupe.2G195700' => 'ppe', 'Prupe.2G209800' => 'ppe', 'Prupe.5G080000' => 'ppe', 'Prupe.6G257900' => 'ppe', 'Psat3g001160' => 'psa', 'Psat6g181880' => 'psa', 'Psat7g233720' => 'psa', 'PSO063G7587' => 'pso', 'PSO339G2145' => 'pso', 'PSO339G3369' => 'pso', 'PSO478G2747' => 'pso', 'PSO513G0140' => 'pso', 'PSO782G1614' => 'pso', 'PSO782G4889' => 'pso', 'PSO782G5485' => 'pso', 'PSO801G0241' => 'pso', 'QL07p048854' => 'qlo', 'QL08p046745' => 'qlo', 'QL08p052606' => 'qlo', 'QL08p053414' => 'qlo', 'QL08p054868' => 'qlo', 'RcHm_v2.0_Chr1g0350251' => 'rch', 'RcHm_v2.0_Chr1g0360851' => 'rch', 'RcHm_v2.0_Chr1g0362791' => 'rch', 'RcHm_v2.0_Chr3g0466281' => 'rch', 'RcHm_v2.0_Chr7g0201481' => 'rch', 'Rhsim01G0148600' => 'rsi', 'Rhsim05G0194400' => 'rsi', 'Rhsim07G0000700' => 'rsi', 'Rhsim07G0000800' => 'rsi', 'Rhsim07G0027900' => 'rsi', 'Rhsim09G0149500' => 'rsi', 'RhsimUnG0186900' => 'rsi', 'Sabra01G0089900' => 'sbr', 'Sabra02G0114700' => 'sbr', 'Sabra02G0116300' => 'sbr', 'Sabra03G0080100' => 'sbr', 'Sabra08G0024300' => 'sbr', 'Sabra10G0174300' => 'sbr', 'Sabra14G0048900' => 'sbr', 'Sabra14G0076500' => 'sbr', 'SalBow5G2513' => 'sbo', 'Sc01g0002300' => 'sci', 'Sc01g0004450' => 'sci', 'Sc06g0001680' => 'sci', 'Sc23g0003580' => 'sci', 'Sed0000913' => 'sed', 'Sed0001655' => 'sed', 'Sed0007745' => 'sed', 'Sed0010951' => 'sed', 'Sed0017599' => 'sed', 'Sed0021405' => 'sed', 'Sed0022810' => 'sed', 'SEGI_07099' => 'sgi', 'SEGI_11931' => 'sgi', 'SEGI_13187' => 'sgi', 'SEGI_29958' => 'sgi', 'SEGI_36351' => 'sgi', 'SGA_v2.0_scaffold126G33770' => 'sas', 'SGA_v2.0_scaffold153G37003' => 'sas', 'SGA_v2.0_scaffold2G01359' => 'sas', 'SGA_v2.0_scaffold5G03064' => 'sas', 'SGA_v2.0_scaffold95G28903' => 'sas', 'SHI12701' => 'shi', 'SHI26410' => 'shi', 'SHI38997' => 'shi', 'SHI53759' => 'shi', 'SHI53886' => 'shi', 'SHI54714' => 'shi', 'SMO011G0041' => 'smo', 'SMO146G0251' => 'smo', 'SMO160G0004' => 'smo', 'SMO174G0057' => 'smo', 'SMO244G0089' => 'smo', 'SMO296G0011' => 'smo', 'Solyc01g091280.3' => 'sly', 'Solyc05g047610.3' => 'sly', 'Solyc05g047640.3' => 'sly', 'Solyc05g055630.3' => 'sly', 'Solyc10g018160.2' => 'sly', 'Solyc10g084820.2' => 'sly', 'Solyc10g086565.2' => 'sly', 'Sopen01g037030' => 'spe', 'Sopen05g027920' => 'spe', 'Sopen05g034070' => 'spe', 'Sopen10g007260' => 'spe', 'Sopen10g034260' => 'spe', 'Sopen10g035950' => 'spe', 'Sp3g07710' => 'spa', 'Sp4g27420' => 'spa', 'Sp5g02450' => 'spa', 'Sp6g01280' => 'spa', 'Sp6g38480' => 'spa', 'Sp7g20780' => 'spa', 'TAR374G1413' => 'tar', 'TAR623G1777' => 'tar', 'TAR629G2370' => 'tar', 'TAR633G1759' => 'tar', 'TAR636G3387' => 'tar', 'THA.LOC104802447' => 'tha', 'THA.LOC104813916' => 'tha', 'THA.LOC104816423' => 'tha', 'THA.LOC104817246' => 'tha', 'THA.LOC104825895' => 'tha', 'Thecc.01G335200' => 'tca', 'Thecc.01G377400' => 'tca', 'Thecc.03G262200' => 'tca', 'Thecc.05G036800' => 'tca', 'Thecc.10G080500' => 'tca', 'Thecc.10G080800' => 'tca', 'Thhalv10001560m.g' => 'esa', 'Thhalv10006120m.g' => 'esa', 'Thhalv10014375m.g' => 'esa', 'Thhalv10021264m.g' => 'esa', 'Thhalv10028856m.g' => 'esa', 'TPR.G1914' => 'tpr', 'TPR.G4757' => 'tpr', 'TPR.G5595' => 'tpr', 'TWI14G0952' => 'twi', 'TWI14G1307' => 'twi', 'TWI38G2143' => 'twi', 'TWI59G0826' => 'twi', 'TWI77G0527' => 'twi', 'TWI81G0150' => 'twi', 'unitig_21.g21018' => 'ugi', 'unitig_26.g9725' => 'ugi', 'unitig_744.g24653' => 'ugi', 'unitig_749.g13778' => 'ugi', 'unitig_899.g15035' => 'ugi', 'vmacro04296' => 'vma', 'vmacro04852' => 'vma', 'vmacro13404' => 'vma', 'vmacro20169' => 'vma', 'vmacro21014' => 'vma', 'VMungo0331G0237' => 'vmu', 'VMungo0331G0706' => 'vmu', 'VMungo0331G1361' => 'vmu', 'VMungo0331G1489' => 'vmu', 'VMungo0540G1037' => 'vmu', 'VMungo0720G2487' => 'vmu', 'VMungo0720G2721' => 'vmu', 'Zm00001eb086860' => 'zma', 'Zm00001eb104760' => 'zma', 'Zm00001eb148220' => 'zma', 'Zm00001eb259030' => 'zma', 'Zm00001eb289590' => 'zma', 'Zm00001eb420150' => 'zma' ) $gf_id = 'HOM05D000968' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000968' ) $data_identifier = 'HOM05D000968' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 19, 'bol' => (int) 9, 'bra' => (int) 12, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 5, 'ccan' => (int) 7, 'cde' => (int) 5, 'cfa' => (int) 8, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 4, 'dca' => (int) 5, 'din' => (int) 5, 'dzi' => (int) 12, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 25, 'fve' => (int) 5, 'gma' => (int) 9, 'ghi' => (int) 18, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 7, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 5, 'sun' => (int) 2, 'lal' => (int) 9, 'lja' => (int) 5, 'lonja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 9, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 2, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 3, 'stu' => (int) 6, 'pvu' => (int) 4, 'ptr' => (int) 8, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 3, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 1, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 5, 'sas' => (int) 5, 'shi' => (int) 6, 'smo' => (int) 6, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 3, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420150' $species_info = array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ) $local_species = 'arhy' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000968', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p31690' => 'bna', 'A03p36040' => 'bna', 'A03p53730' => 'bna', 'A04p01410' => 'bna', 'A05p05420' => 'bna', 'A05p39630' => 'bna', 'A05p39640' => 'bna', 'A09p00970' => 'bna', 'A09p53060' => 'bna', 'A10p31890' => 'bna', 'Aa31LG10G15040' => 'aar', 'Aa31LG1G21090' => 'aar', 'Aa31LG1G26900' => 'aar', 'Aa31LG3G1820' => 'aar', 'Aa31LG5G1100' => 'aar', 'Aa31LG6G4740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2265' => 'aag', 'Actinidia07998' => 'ach', 'Actinidia11266' => 'ach', 'Actinidia12682' => 'ach', 'Actinidia26479' => 'ach', 'Actinidia31406' => 'ach', 'Actinidia32437' => 'ach', 'Actinidia38862' => 'ach', 'Ah.05g174230' => 'amhyb', 'Ah.05g179070' => 'amhyb', 'Ah.05g179090' => 'amhyb', 'Ah.12g059950' => 'amhyb', 'AL3G20480' => 'aly', 'AL4G44520' => 'aly', 'AL5G43110' => 'aly', 'AL6G13890' => 'aly', 'AL6G52620' => 'aly', 'AL7G30830' => 'aly', 'Aqoxy1G00899' => 'aox', 'Aqoxy5G04333' => 'aox', 'Aqoxy7G00641' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3IZ0NN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4EF6AW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W9P8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79GA3M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C43NQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFCU6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G95YVJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCHK29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LU1UG8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX91RN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGB4B1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8DA0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9H7JI' => 'arhy', 'AT3G09320' => 'ath', 'AT3G60800' => 'ath', 'AT4G00840' => 'ath', 'AT4G22750' => 'ath', 'AT5G04270' => 'ath', 'ATR0090G003' => 'atr', 'ATR0559G349' => 'atr', 'ATR0680G261' => 'atr', 'ATR0810G048' => 'atr', 'Atru.chr12.831' => 'acertr', 'Atru.chr5.303' => 'acertr', 'Atru.chr5.748' => 'acertr', 'Atru.chr8.1999' => 'acertr', 'Atru.chr9.1436' => 'acertr', 'AUR62004211' => 'cqu', 'AUR62004548' => 'cqu', 'AUR62013637' => 'cqu', 'AUR62022662' => 'cqu', 'AUR62025777' => 'cqu', 'AUR62042386' => 'cqu', 'BcaB01g02310' => 'bca', 'BcaB01g06062' => 'bca', 'BcaB02g08975' => 'bca', 'BcaB02g08980' => 'bca', 'BcaC01g04228' => 'bca', 'BcaC01g06830' => 'bca', 'BcaC02g10186' => 'bca', 'BcaC02g12214' => 'bca', 'BcaC04g24101' => 'bca', 'BcaC05g29520' => 'bca', 'BcaC05g29661' => 'bca', 'BcaC06g32130' => 'bca', 'BcaC06g32131' => 'bca', 'BcaC07g40601' => 'bca', 'BcaC07g42641' => 'bca', 'BcaNung01038' => 'bca', 'BcaNung01676' => 'bca', 'BcaNung02480' => 'bca', 'BcaNung07376' => 'bca', 'BolC3t16146H' => 'bol', 'BolC3t16637H' => 'bol', 'BolC4t22257H' => 'bol', 'BolC4t24728H' => 'bol', 'BolC5t34517H' => 'bol', 'BolC7t45703H' => 'bol', 'BolC8t51166H' => 'bol', 'BolC9t53038H' => 'bol', 'BolC9t60000H' => 'bol', 'BraA01t01345Z' => 'bra', 'BraA01t01346Z' => 'bra', 'BraA01t01348Z' => 'bra', 'BraA03t12347Z' => 'bra', 'BraA03t12775Z' => 'bra', 'BraA03t14439Z' => 'bra', 'BraA04t15860Z' => 'bra', 'BraA05t19511Z' => 'bra', 'BraA05t22746Z' => 'bra', 'BraA09t35767Z' => 'bra', 'BraA09t40732Z' => 'bra', 'BraA10t45233Z' => 'bra', 'C03p38720' => 'bna', 'C03p43680' => 'bna', 'C04p06350' => 'bna', 'C04p31800' => 'bna', 'C05p58680' => 'bna', 'C07p52110' => 'bna', 'C08p35760' => 'bna', 'C09p01050' => 'bna', 'C09p72600' => 'bna', 'CAN.G106.2' => 'can', 'CAN.G1482.1' => 'can', 'CAN.G324.12' => 'can', 'CAN.G388.20' => 'can', 'CAN.G412.7' => 'can', 'CAN.G694.32' => 'can', 'CAN.G92.12' => 'can', 'CANSAT11G2353' => 'cansat', 'CANSAT21G1398' => 'cansat', 'CANSAT56G2456' => 'cansat', 'CANSAT56G3031' => 'cansat', 'CANSAT56G4539' => 'cansat', 'CARHR083680' => 'chi', 'CARHR171190' => 'chi', 'CARHR209010' => 'chi', 'CARHR229680' => 'chi', 'CARHR249490' => 'chi', 'Carub.0003s0844' => 'cru', 'Carub.0005s2755' => 'cru', 'Carub.0006s0322' => 'cru', 'Carub.0006s3586' => 'cru', 'Carub.0007s1855' => 'cru', 'Ca_07808_v3' => 'car', 'Ca_09535_v3' => 'car', 'Ca_10548_v3' => 'car', 'Ca_19913_v3' => 'car', 'Ca_19916_v3' => 'car', 'Ca_19975_v3' => 'car', 'CBR_g22876' => 'cbr', 'CBR_g22879' => 'cbr', 'CBR_g38491' => 'cbr', 'CBR_g54185' => 'cbr', 'CBR_g54190' => 'cbr', 'Cc02_g11020' => 'ccan', 'Cc02_g23920' => 'ccan', 'Cc02_g39860' => 'ccan', 'Cc02_g39870' => 'ccan', 'Cc03_g06760' => 'ccan', 'Cc06_g02450' => 'ccan', 'Cc09_g09450' => 'ccan', 'CDE02G1959' => 'cde', 'CDE04G0600' => 'cde', 'CDE07G1996' => 'cde', 'CDE07G2078' => 'cde', 'CDE11G0611' => 'cde', 'Cfa001683' => 'cfa', 'Cfa001734' => 'cfa', 'Cfa001737' => 'cfa', 'Cfa003751' => 'cfa', 'Cfa012019' => 'cfa', 'Cfa017353' => 'cfa', 'Cfa017732' => 'cfa', 'Cfa022464' => 'cfa', 'Ciclev10012400m.g' => 'ccl', 'Ciclev10021242m.g' => 'ccl', 'Ciclev10021302m.g' => 'ccl', 'Ciclev10021463m.g' => 'ccl', 'Ciclev10032359m.g' => 'ccl', 'CiPaw.01G081000' => 'cil', 'CiPaw.01G262500' => 'cil', 'CiPaw.01G269800' => 'cil', 'CiPaw.02G168400' => 'cil', 'CiPaw.05G119500' => 'cil', 'CiPaw.11G147300' => 'cil', 'ClCG01G003630' => 'cla', 'ClCG05G000510' => 'cla', 'ClCG05G002300' => 'cla', 'ClCG08G007650' => 'cla', 'ClCG10G021250' => 'cla', 'COL.COLO4_06218' => 'col', 'COL.COLO4_12538' => 'col', 'COL.COLO4_14775' => 'col', 'COL.COLO4_23875' => 'col', 'Cpa.g.sc141.16' => 'cpa', 'Cpa.g.sc169.16' => 'cpa', 'Cpa.g.sc244.4' => 'cpa', 'Cpa.g.sc244.5' => 'cpa', 'Cpa.g.sc29.87' => 'cpa', 'Cpa.g.sc53.115' => 'cpa', 'Cre03.g207502' => 'cre', 'Cre06.g277000' => 'cre', 'Cre09.g394050' => 'cre', 'CsaV3_3G007680' => 'csa', 'CsaV3_3G009710' => 'csa', 'CsaV3_3G034790' => 'csa', 'CsaV3_5G003750' => 'csa', 'CsaV3_6G036620' => 'csa', 'CSS0002288' => 'camsi', 'CSS0011250' => 'camsi', 'CSS0021619' => 'camsi', 'CSS0046701' => 'camsi', 'DCAR_006420' => 'dca', 'DCAR_006865' => 'dca', 'DCAR_008558' => 'dca', 'DCAR_028754' => 'dca', 'DCAR_028755' => 'dca', 'Dinv31218' => 'din', 'Dinv32371' => 'din', 'Dinv34250' => 'din', 'Dinv37156' => 'din', 'Dinv43704' => 'din', 'Duzib093G1811' => 'dzi', 'Duzib106G1622' => 'dzi', 'Duzib114G0504' => 'dzi', 'Duzib128G0338' => 'dzi', 'Duzib128G1577' => 'dzi', 'Duzib133G0104' => 'dzi', 'Duzib133G1080' => 'dzi', 'Duzib138G0324' => 'dzi', 'Duzib138G0394' => 'dzi', 'Duzib205G0122' => 'dzi', 'Duzib268G1020' => 'dzi', 'Duzib268G1359' => 'dzi', 'ECA232G3929' => 'eca', 'ECA236G2210' => 'eca', 'ECA236G2287' => 'eca', 'ECA240G4568' => 'eca', 'ECA247G0894' => 'eca', 'EL10Ac1g00200' => 'bvu', 'EL10Ac1g00886' => 'bvu', 'EL10As1g23091' => 'bvu', 'EL10As1g23092' => 'bvu', 'Eucgr.A01284' => 'egr', 'Eucgr.A01285' => 'egr', 'Eucgr.D02456' => 'egr', 'Eucgr.E00018' => 'egr', 'Eucgr.E01439' => 'egr', 'Eucgr.G02859' => 'egr', 'FAN01G0168' => 'fan', 'FAN01G0453' => 'fan', 'FAN01G2761' => 'fan', 'FAN02G1239' => 'fan', 'FAN03G0645' => 'fan', 'FAN03G2707' => 'fan', 'FAN03G2978' => 'fan', 'FAN04G0227' => 'fan', 'FAN06G0091' => 'fan', 'FAN06G1418' => 'fan', 'FAN06G1512' => 'fan', 'FAN06G1986' => 'fan', 'FAN06G2905' => 'fan', 'FAN06G4325' => 'fan', 'FAN08G0033' => 'fan', 'FAN09G0642' => 'fan', 'FAN10G1763' => 'fan', 'FAN10G2026' => 'fan', 'FAN10G2513' => 'fan', 'FAN10G3402' => 'fan', 'FAN10G3564' => 'fan', 'FAN10G3987' => 'fan', 'FAN13G1490' => 'fan', 'FAN14G5857' => 'fan', 'FAN18G1188' => 'fan', 'FvH4_5g00750' => 'fve', 'FvH4_6g13410' => 'fve', 'FvH4_7g11740' => 'fve', 'FvH4_7g17410' => 'fve', 'FvH4_7g18860' => 'fve', 'Glyma.01G099100' => 'gma', 'Glyma.01G142300' => 'gma', 'Glyma.03G025500' => 'gma', 'Glyma.03G069700' => 'gma', 'Glyma.03G260000' => 'gma', 'Glyma.09G269800' => 'gma', 'Glyma.10G208700' => 'gma', 'Glyma.18G220400' => 'gma', 'Glyma.20G182000' => 'gma', 'Gohir.A01G221726' => 'ghi', 'Gohir.A07G134600' => 'ghi', 'Gohir.A07G146000' => 'ghi', 'Gohir.A08G173900' => 'ghi', 'Gohir.A09G194900' => 'ghi', 'Gohir.A10G204100' => 'ghi', 'Gohir.A11G080600' => 'ghi', 'Gohir.A11G327500' => 'ghi', 'Gohir.A12G101800' => 'ghi', 'Gohir.D01G211200' => 'ghi', 'Gohir.D07G139200' => 'ghi', 'Gohir.D07G152100' => 'ghi', 'Gohir.D08G192600' => 'ghi', 'Gohir.D09G189200' => 'ghi', 'Gohir.D10G212000' => 'ghi', 'Gohir.D11G085200' => 'ghi', 'Gohir.D11G346400' => 'ghi', 'Gohir.D12G104800' => 'ghi', 'Gorai.001G151300' => 'gra', 'Gorai.001G174100' => 'gra', 'Gorai.002G257000' => 'gra', 'Gorai.004G202600' => 'gra', 'Gorai.007G090900' => 'gra', 'Gorai.007G376700' => 'gra', 'Gorai.008G114100' => 'gra', 'Gorai.011G237900' => 'gra', 'GSVIVG01005450001' => 'vvi', 'GSVIVG01016232001' => 'vvi', 'GSVIVG01026157001' => 'vvi', 'GSVIVG01027419001' => 'vvi', 'GSVIVG01027631001' => 'vvi', 'GSVIVG01034143001' => 'vvi', 'HanXRQChr03g0093921' => 'han', 'HanXRQChr04g0120001' => 'han', 'HanXRQChr04g0122561' => 'han', 'HanXRQChr09g0246851' => 'han', 'HanXRQChr10g0293311' => 'han', 'HanXRQChr13g0425231' => 'han', 'HanXRQChr16g0532571' => 'han', 'Haze_09050' => 'cav', 'Haze_15715' => 'cav', 'Haze_15716' => 'cav', 'Haze_16803' => 'cav', 'Haze_16850' => 'cav', 'Hma1.2p1_0301F.1_g118655' => 'hma', 'Hma1.2p1_0309F.1_g120590' => 'hma', 'Hma1.2p1_0936F.1_g238900' => 'hma', 'Hma1.2p1_3552F.1_g336740' => 'hma', 'HPP92_003520' => 'vpl', 'HPP92_006628' => 'vpl', 'HPP92_006645' => 'vpl', 'HPP92_014669' => 'vpl', 'HPP92_015077' => 'vpl', 'Hund16742' => 'sun', 'Hund17022' => 'sun', 'Lalb_Chr02g0152131' => 'lal', 'Lalb_Chr05g0225371' => 'lal', 'Lalb_Chr07g0189841' => 'lal', 'Lalb_Chr07g0192961' => 'lal', 'Lalb_Chr12g0208221' => 'lal', 'Lalb_Chr13g0291211' => 'lal', 'Lalb_Chr13g0291781' => 'lal', 'Lalb_Chr18g0044651' => 'lal', 'Lalb_Chr21g0313731' => 'lal', 'Lj1g0022533' => 'lja', 'Lj2A18T50' => 'lonja', 'Lj2A92G93' => 'lonja', 'Lj3A965T73' => 'lonja', 'Lj3g0000673' => 'lja', 'Lj3g0002666' => 'lja', 'Lj4g0016985' => 'lja', 'Lj5g0003625' => 'lja', 'Lj7A529G36' => 'lonja', 'Lj9A569T49' => 'lonja', 'Lj9A604T63' => 'lonja', 'Lsat_1_v5_gn_3_132060' => 'lsa', 'Lsat_1_v5_gn_4_68941' => 'lsa', 'Lsat_1_v5_gn_5_95580' => 'lsa', 'Lsat_1_v5_gn_7_161' => 'lsa', 'Lsat_1_v5_gn_7_7041' => 'lsa', 'Lsat_1_v5_gn_9_33481' => 'lsa', 'Lsat_1_v5_gn_9_68260' => 'lsa', 'Manes.01G073100' => 'mes', 'Manes.01G266300' => 'mes', 'Manes.02G033300' => 'mes', 'Manes.05G017900' => 'mes', 'Manes.05G046100' => 'mes', 'Manes.08G080900' => 'mes', 'Manes.10G049400' => 'mes', 'Mapoly0009s0186' => 'mpo', 'Mapoly0036s0118' => 'mpo', 'Mapoly0101s0046' => 'mpo', 'MBI04_g30218_MAGBIO' => 'mbi', 'MBI04_g35564_MAGBIO' => 'mbi', 'MBI12_g34011_MAGBIO' => 'mbi', 'MBI14_g04655_MAGBIO' => 'mbi', 'MCO07G653' => 'mco', 'MCO10G173' => 'mco', 'MD01G1087100' => 'mdo', 'MD01G1104200' => 'mdo', 'MD02G1205100' => 'mdo', 'MD04G1079200' => 'mdo', 'MD04G1131400' => 'mdo', 'MD07G1121600' => 'mdo', 'MD07G1157300' => 'mdo', 'MD07G1171000' => 'mdo', 'MD12G1144500' => 'mdo', 'Medtr1g094610' => 'mtr', 'Medtr4g021795' => 'mtr', 'Medtr4g023760' => 'mtr', 'Medtr7g118050' => 'mtr', 'MELO3C005582.2' => 'cme', 'MELO3C005989.2' => 'cme', 'MELO3C006192.2' => 'cme', 'MELO3C009248.2' => 'cme', 'MELO3C019817.2' => 'cme', 'Migut.B01625' => 'egut', 'Migut.B01915' => 'egut', 'Migut.F01721' => 'egut', 'Migut.J00314' => 'egut', 'MSTRG.20742' => 'ama', 'MSTRG.8134' => 'ama', 'Nitab4.5_0000096g0010' => 'nta', 'Nitab4.5_0000202g0030' => 'nta', 'Nitab4.5_0000216g0370' => 'nta', 'Nitab4.5_0000457g0230' => 'nta', 'Nitab4.5_0001702g0170' => 'nta', 'Nitab4.5_0003607g0010' => 'nta', 'Nitab4.5_0004917g0020' => 'nta', 'Nitab4.5_0007059g0010' => 'nta', 'Nitab4.5_0007184g0010' => 'nta', 'Nitab4.5_0007346g0020' => 'nta', 'Nn1g00410' => 'nnu', 'Nn1g01252' => 'nnu', 'Nn2g11168' => 'nnu', 'Nn2g13403' => 'nnu', 'Nn2g13760' => 'nnu', 'Nn4g26380' => 'nnu', 'Oeu000806.2' => 'oeu', 'Oeu005788.1' => 'oeu', 'Oeu006900.3' => 'oeu', 'Oeu007797.1' => 'oeu', 'Oeu011932.1' => 'oeu', 'Oeu022739.1' => 'oeu', 'Oeu037918.1' => 'oeu', 'Oeu055490.2' => 'oeu', 'Os01g0844400' => 'osa', 'Os02g0819100' => 'osa', 'Os03g0804300' => 'osa', 'Os05g0458000' => 'osa', 'Os07g0467800' => 'osa', 'Os12g0602200' => 'osa', 'Peaxi162Scf00013g03444' => 'pax', 'Peaxi162Scf00094g01120' => 'pax', 'Peaxi162Scf00191g01211' => 'pax', 'Peaxi162Scf00238g01110' => 'pax', 'Peaxi162Scf00330g00719' => 'pax', 'Peaxi162Scf00627g00018' => 'pax', 'PGR031G2686' => 'pgr', 'PGR042G0809' => 'pgr', 'PGR142G0193' => 'pgr', 'PGSC0003DMG400011066' => 'stu', 'PGSC0003DMG400012041' => 'stu', 'PGSC0003DMG400013678' => 'stu', 'PGSC0003DMG400023477' => 'stu', 'PGSC0003DMG400025956' => 'stu', 'PGSC0003DMG401019151' => 'stu', 'Phvul.006G116400' => 'pvu', 'Phvul.007G097300' => 'pvu', 'Phvul.010G015000' => 'pvu', 'Phvul.010G083900' => 'pvu', 'Potri.001G117100' => 'ptr', 'Potri.002G147300' => 'ptr', 'Potri.003G115600' => 'ptr', 'Potri.006G087400' => 'ptr', 'Potri.010G226100' => 'ptr', 'Potri.014G069200' => 'ptr', 'Potri.014G104000' => 'ptr', 'Potri.016G100200' => 'ptr', 'Pp3c10_20450' => 'ppa', 'Pp3c1_42400' => 'ppa', 'Pp3c3_24390' => 'ppa', 'Pp3c3_2860' => 'ppa', 'PRCOL_00003193' => 'pco', 'Prupe.2G144500' => 'ppe', 'Prupe.2G195700' => 'ppe', 'Prupe.2G209800' => 'ppe', 'Prupe.5G080000' => 'ppe', 'Prupe.6G257900' => 'ppe', 'Psat3g001160' => 'psa', 'Psat6g181880' => 'psa', 'Psat7g233720' => 'psa', 'PSO063G7587' => 'pso', 'PSO339G2145' => 'pso', 'PSO339G3369' => 'pso', 'PSO478G2747' => 'pso', 'PSO513G0140' => 'pso', 'PSO782G1614' => 'pso', 'PSO782G4889' => 'pso', 'PSO782G5485' => 'pso', 'PSO801G0241' => 'pso', 'QL07p048854' => 'qlo', 'QL08p046745' => 'qlo', 'QL08p052606' => 'qlo', 'QL08p053414' => 'qlo', 'QL08p054868' => 'qlo', 'RcHm_v2.0_Chr1g0350251' => 'rch', 'RcHm_v2.0_Chr1g0360851' => 'rch', 'RcHm_v2.0_Chr1g0362791' => 'rch', 'RcHm_v2.0_Chr3g0466281' => 'rch', 'RcHm_v2.0_Chr7g0201481' => 'rch', 'Rhsim01G0148600' => 'rsi', 'Rhsim05G0194400' => 'rsi', 'Rhsim07G0000700' => 'rsi', 'Rhsim07G0000800' => 'rsi', 'Rhsim07G0027900' => 'rsi', 'Rhsim09G0149500' => 'rsi', 'RhsimUnG0186900' => 'rsi', 'Sabra01G0089900' => 'sbr', 'Sabra02G0114700' => 'sbr', 'Sabra02G0116300' => 'sbr', 'Sabra03G0080100' => 'sbr', 'Sabra08G0024300' => 'sbr', 'Sabra10G0174300' => 'sbr', 'Sabra14G0048900' => 'sbr', 'Sabra14G0076500' => 'sbr', 'SalBow5G2513' => 'sbo', 'Sc01g0002300' => 'sci', 'Sc01g0004450' => 'sci', 'Sc06g0001680' => 'sci', 'Sc23g0003580' => 'sci', 'Sed0000913' => 'sed', 'Sed0001655' => 'sed', 'Sed0007745' => 'sed', 'Sed0010951' => 'sed', 'Sed0017599' => 'sed', 'Sed0021405' => 'sed', 'Sed0022810' => 'sed', 'SEGI_07099' => 'sgi', 'SEGI_11931' => 'sgi', 'SEGI_13187' => 'sgi', 'SEGI_29958' => 'sgi', 'SEGI_36351' => 'sgi', 'SGA_v2.0_scaffold126G33770' => 'sas', 'SGA_v2.0_scaffold153G37003' => 'sas', 'SGA_v2.0_scaffold2G01359' => 'sas', 'SGA_v2.0_scaffold5G03064' => 'sas', 'SGA_v2.0_scaffold95G28903' => 'sas', 'SHI12701' => 'shi', 'SHI26410' => 'shi', 'SHI38997' => 'shi', 'SHI53759' => 'shi', 'SHI53886' => 'shi', 'SHI54714' => 'shi', 'SMO011G0041' => 'smo', 'SMO146G0251' => 'smo', 'SMO160G0004' => 'smo', 'SMO174G0057' => 'smo', 'SMO244G0089' => 'smo', 'SMO296G0011' => 'smo', 'Solyc01g091280.3' => 'sly', 'Solyc05g047610.3' => 'sly', 'Solyc05g047640.3' => 'sly', 'Solyc05g055630.3' => 'sly', 'Solyc10g018160.2' => 'sly', 'Solyc10g084820.2' => 'sly', 'Solyc10g086565.2' => 'sly', 'Sopen01g037030' => 'spe', 'Sopen05g027920' => 'spe', 'Sopen05g034070' => 'spe', 'Sopen10g007260' => 'spe', 'Sopen10g034260' => 'spe', 'Sopen10g035950' => 'spe', 'Sp3g07710' => 'spa', 'Sp4g27420' => 'spa', 'Sp5g02450' => 'spa', 'Sp6g01280' => 'spa', 'Sp6g38480' => 'spa', 'Sp7g20780' => 'spa', 'TAR374G1413' => 'tar', 'TAR623G1777' => 'tar', 'TAR629G2370' => 'tar', 'TAR633G1759' => 'tar', 'TAR636G3387' => 'tar', 'THA.LOC104802447' => 'tha', 'THA.LOC104813916' => 'tha', 'THA.LOC104816423' => 'tha', 'THA.LOC104817246' => 'tha', 'THA.LOC104825895' => 'tha', 'Thecc.01G335200' => 'tca', 'Thecc.01G377400' => 'tca', 'Thecc.03G262200' => 'tca', 'Thecc.05G036800' => 'tca', 'Thecc.10G080500' => 'tca', 'Thecc.10G080800' => 'tca', 'Thhalv10001560m.g' => 'esa', 'Thhalv10006120m.g' => 'esa', 'Thhalv10014375m.g' => 'esa', 'Thhalv10021264m.g' => 'esa', 'Thhalv10028856m.g' => 'esa', 'TPR.G1914' => 'tpr', 'TPR.G4757' => 'tpr', 'TPR.G5595' => 'tpr', 'TWI14G0952' => 'twi', 'TWI14G1307' => 'twi', 'TWI38G2143' => 'twi', 'TWI59G0826' => 'twi', 'TWI77G0527' => 'twi', 'TWI81G0150' => 'twi', 'unitig_21.g21018' => 'ugi', 'unitig_26.g9725' => 'ugi', 'unitig_744.g24653' => 'ugi', 'unitig_749.g13778' => 'ugi', 'unitig_899.g15035' => 'ugi', 'vmacro04296' => 'vma', 'vmacro04852' => 'vma', 'vmacro13404' => 'vma', 'vmacro20169' => 'vma', 'vmacro21014' => 'vma', 'VMungo0331G0237' => 'vmu', 'VMungo0331G0706' => 'vmu', 'VMungo0331G1361' => 'vmu', 'VMungo0331G1489' => 'vmu', 'VMungo0540G1037' => 'vmu', 'VMungo0720G2487' => 'vmu', 'VMungo0720G2721' => 'vmu', 'Zm00001eb086860' => 'zma', 'Zm00001eb104760' => 'zma', 'Zm00001eb148220' => 'zma', 'Zm00001eb259030' => 'zma', 'Zm00001eb289590' => 'zma', 'Zm00001eb420150' => 'zma' ), 'gf_id' => 'HOM05D000968', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000968' ), 'data_identifier' => 'HOM05D000968', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000968', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p31690' => 'bna', 'A03p36040' => 'bna', 'A03p53730' => 'bna', 'A04p01410' => 'bna', 'A05p05420' => 'bna', 'A05p39630' => 'bna', 'A05p39640' => 'bna', 'A09p00970' => 'bna', 'A09p53060' => 'bna', 'A10p31890' => 'bna', 'Aa31LG10G15040' => 'aar', 'Aa31LG1G21090' => 'aar', 'Aa31LG1G26900' => 'aar', 'Aa31LG3G1820' => 'aar', 'Aa31LG5G1100' => 'aar', 'Aa31LG6G4740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2265' => 'aag', 'Actinidia07998' => 'ach', 'Actinidia11266' => 'ach', 'Actinidia12682' => 'ach', 'Actinidia26479' => 'ach', 'Actinidia31406' => 'ach', 'Actinidia32437' => 'ach', 'Actinidia38862' => 'ach', 'Ah.05g174230' => 'amhyb', 'Ah.05g179070' => 'amhyb', 'Ah.05g179090' => 'amhyb', 'Ah.12g059950' => 'amhyb', 'AL3G20480' => 'aly', 'AL4G44520' => 'aly', 'AL5G43110' => 'aly', 'AL6G13890' => 'aly', 'AL6G52620' => 'aly', 'AL7G30830' => 'aly', 'Aqoxy1G00899' => 'aox', 'Aqoxy5G04333' => 'aox', 'Aqoxy7G00641' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3IZ0NN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4EF6AW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W9P8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79GA3M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C43NQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFCU6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G95YVJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCHK29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LU1UG8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX91RN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGB4B1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8DA0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9H7JI' => 'arhy', 'AT3G09320' => 'ath', 'AT3G60800' => 'ath', 'AT4G00840' => 'ath', 'AT4G22750' => 'ath', 'AT5G04270' => 'ath', 'ATR0090G003' => 'atr', 'ATR0559G349' => 'atr', 'ATR0680G261' => 'atr', 'ATR0810G048' => 'atr', 'Atru.chr12.831' => 'acertr', 'Atru.chr5.303' => 'acertr', 'Atru.chr5.748' => 'acertr', 'Atru.chr8.1999' => 'acertr', 'Atru.chr9.1436' => 'acertr', 'AUR62004211' => 'cqu', 'AUR62004548' => 'cqu', 'AUR62013637' => 'cqu', 'AUR62022662' => 'cqu', 'AUR62025777' => 'cqu', 'AUR62042386' => 'cqu', 'BcaB01g02310' => 'bca', 'BcaB01g06062' => 'bca', 'BcaB02g08975' => 'bca', 'BcaB02g08980' => 'bca', 'BcaC01g04228' => 'bca', 'BcaC01g06830' => 'bca', 'BcaC02g10186' => 'bca', 'BcaC02g12214' => 'bca', 'BcaC04g24101' => 'bca', 'BcaC05g29520' => 'bca', 'BcaC05g29661' => 'bca', 'BcaC06g32130' => 'bca', 'BcaC06g32131' => 'bca', 'BcaC07g40601' => 'bca', 'BcaC07g42641' => 'bca', 'BcaNung01038' => 'bca', 'BcaNung01676' => 'bca', 'BcaNung02480' => 'bca', 'BcaNung07376' => 'bca', 'BolC3t16146H' => 'bol', 'BolC3t16637H' => 'bol', 'BolC4t22257H' => 'bol', 'BolC4t24728H' => 'bol', 'BolC5t34517H' => 'bol', 'BolC7t45703H' => 'bol', 'BolC8t51166H' => 'bol', 'BolC9t53038H' => 'bol', 'BolC9t60000H' => 'bol', 'BraA01t01345Z' => 'bra', 'BraA01t01346Z' => 'bra', 'BraA01t01348Z' => 'bra', 'BraA03t12347Z' => 'bra', 'BraA03t12775Z' => 'bra', 'BraA03t14439Z' => 'bra', 'BraA04t15860Z' => 'bra', 'BraA05t19511Z' => 'bra', 'BraA05t22746Z' => 'bra', 'BraA09t35767Z' => 'bra', 'BraA09t40732Z' => 'bra', 'BraA10t45233Z' => 'bra', 'C03p38720' => 'bna', 'C03p43680' => 'bna', 'C04p06350' => 'bna', 'C04p31800' => 'bna', 'C05p58680' => 'bna', 'C07p52110' => 'bna', 'C08p35760' => 'bna', 'C09p01050' => 'bna', 'C09p72600' => 'bna', 'CAN.G106.2' => 'can', 'CAN.G1482.1' => 'can', 'CAN.G324.12' => 'can', 'CAN.G388.20' => 'can', 'CAN.G412.7' => 'can', 'CAN.G694.32' => 'can', 'CAN.G92.12' => 'can', 'CANSAT11G2353' => 'cansat', 'CANSAT21G1398' => 'cansat', 'CANSAT56G2456' => 'cansat', 'CANSAT56G3031' => 'cansat', 'CANSAT56G4539' => 'cansat', 'CARHR083680' => 'chi', 'CARHR171190' => 'chi', 'CARHR209010' => 'chi', 'CARHR229680' => 'chi', 'CARHR249490' => 'chi', 'Carub.0003s0844' => 'cru', 'Carub.0005s2755' => 'cru', 'Carub.0006s0322' => 'cru', 'Carub.0006s3586' => 'cru', 'Carub.0007s1855' => 'cru', 'Ca_07808_v3' => 'car', 'Ca_09535_v3' => 'car', 'Ca_10548_v3' => 'car', 'Ca_19913_v3' => 'car', 'Ca_19916_v3' => 'car', 'Ca_19975_v3' => 'car', 'CBR_g22876' => 'cbr', 'CBR_g22879' => 'cbr', 'CBR_g38491' => 'cbr', 'CBR_g54185' => 'cbr', 'CBR_g54190' => 'cbr', 'Cc02_g11020' => 'ccan', 'Cc02_g23920' => 'ccan', 'Cc02_g39860' => 'ccan', 'Cc02_g39870' => 'ccan', 'Cc03_g06760' => 'ccan', 'Cc06_g02450' => 'ccan', 'Cc09_g09450' => 'ccan', 'CDE02G1959' => 'cde', 'CDE04G0600' => 'cde', 'CDE07G1996' => 'cde', 'CDE07G2078' => 'cde', 'CDE11G0611' => 'cde', 'Cfa001683' => 'cfa', 'Cfa001734' => 'cfa', 'Cfa001737' => 'cfa', 'Cfa003751' => 'cfa', 'Cfa012019' => 'cfa', 'Cfa017353' => 'cfa', 'Cfa017732' => 'cfa', 'Cfa022464' => 'cfa', 'Ciclev10012400m.g' => 'ccl', 'Ciclev10021242m.g' => 'ccl', 'Ciclev10021302m.g' => 'ccl', 'Ciclev10021463m.g' => 'ccl', 'Ciclev10032359m.g' => 'ccl', 'CiPaw.01G081000' => 'cil', 'CiPaw.01G262500' => 'cil', 'CiPaw.01G269800' => 'cil', 'CiPaw.02G168400' => 'cil', 'CiPaw.05G119500' => 'cil', 'CiPaw.11G147300' => 'cil', 'ClCG01G003630' => 'cla', 'ClCG05G000510' => 'cla', 'ClCG05G002300' => 'cla', 'ClCG08G007650' => 'cla', 'ClCG10G021250' => 'cla', 'COL.COLO4_06218' => 'col', 'COL.COLO4_12538' => 'col', 'COL.COLO4_14775' => 'col', 'COL.COLO4_23875' => 'col', 'Cpa.g.sc141.16' => 'cpa', 'Cpa.g.sc169.16' => 'cpa', 'Cpa.g.sc244.4' => 'cpa', 'Cpa.g.sc244.5' => 'cpa', 'Cpa.g.sc29.87' => 'cpa', 'Cpa.g.sc53.115' => 'cpa', 'Cre03.g207502' => 'cre', 'Cre06.g277000' => 'cre', 'Cre09.g394050' => 'cre', 'CsaV3_3G007680' => 'csa', 'CsaV3_3G009710' => 'csa', 'CsaV3_3G034790' => 'csa', 'CsaV3_5G003750' => 'csa', 'CsaV3_6G036620' => 'csa', 'CSS0002288' => 'camsi', 'CSS0011250' => 'camsi', 'CSS0021619' => 'camsi', 'CSS0046701' => 'camsi', 'DCAR_006420' => 'dca', 'DCAR_006865' => 'dca', 'DCAR_008558' => 'dca', 'DCAR_028754' => 'dca', 'DCAR_028755' => 'dca', 'Dinv31218' => 'din', 'Dinv32371' => 'din', 'Dinv34250' => 'din', 'Dinv37156' => 'din', 'Dinv43704' => 'din', 'Duzib093G1811' => 'dzi', 'Duzib106G1622' => 'dzi', 'Duzib114G0504' => 'dzi', 'Duzib128G0338' => 'dzi', 'Duzib128G1577' => 'dzi', 'Duzib133G0104' => 'dzi', 'Duzib133G1080' => 'dzi', 'Duzib138G0324' => 'dzi', 'Duzib138G0394' => 'dzi', 'Duzib205G0122' => 'dzi', 'Duzib268G1020' => 'dzi', 'Duzib268G1359' => 'dzi', 'ECA232G3929' => 'eca', 'ECA236G2210' => 'eca', 'ECA236G2287' => 'eca', 'ECA240G4568' => 'eca', 'ECA247G0894' => 'eca', 'EL10Ac1g00200' => 'bvu', 'EL10Ac1g00886' => 'bvu', 'EL10As1g23091' => 'bvu', 'EL10As1g23092' => 'bvu', 'Eucgr.A01284' => 'egr', 'Eucgr.A01285' => 'egr', 'Eucgr.D02456' => 'egr', 'Eucgr.E00018' => 'egr', 'Eucgr.E01439' => 'egr', 'Eucgr.G02859' => 'egr', 'FAN01G0168' => 'fan', 'FAN01G0453' => 'fan', 'FAN01G2761' => 'fan', 'FAN02G1239' => 'fan', 'FAN03G0645' => 'fan', 'FAN03G2707' => 'fan', 'FAN03G2978' => 'fan', 'FAN04G0227' => 'fan', 'FAN06G0091' => 'fan', 'FAN06G1418' => 'fan', 'FAN06G1512' => 'fan', 'FAN06G1986' => 'fan', 'FAN06G2905' => 'fan', 'FAN06G4325' => 'fan', 'FAN08G0033' => 'fan', 'FAN09G0642' => 'fan', 'FAN10G1763' => 'fan', 'FAN10G2026' => 'fan', 'FAN10G2513' => 'fan', 'FAN10G3402' => 'fan', 'FAN10G3564' => 'fan', 'FAN10G3987' => 'fan', 'FAN13G1490' => 'fan', 'FAN14G5857' => 'fan', 'FAN18G1188' => 'fan', 'FvH4_5g00750' => 'fve', 'FvH4_6g13410' => 'fve', 'FvH4_7g11740' => 'fve', 'FvH4_7g17410' => 'fve', 'FvH4_7g18860' => 'fve', 'Glyma.01G099100' => 'gma', 'Glyma.01G142300' => 'gma', 'Glyma.03G025500' => 'gma', 'Glyma.03G069700' => 'gma', 'Glyma.03G260000' => 'gma', 'Glyma.09G269800' => 'gma', 'Glyma.10G208700' => 'gma', 'Glyma.18G220400' => 'gma', 'Glyma.20G182000' => 'gma', 'Gohir.A01G221726' => 'ghi', 'Gohir.A07G134600' => 'ghi', 'Gohir.A07G146000' => 'ghi', 'Gohir.A08G173900' => 'ghi', 'Gohir.A09G194900' => 'ghi', 'Gohir.A10G204100' => 'ghi', 'Gohir.A11G080600' => 'ghi', 'Gohir.A11G327500' => 'ghi', 'Gohir.A12G101800' => 'ghi', 'Gohir.D01G211200' => 'ghi', 'Gohir.D07G139200' => 'ghi', 'Gohir.D07G152100' => 'ghi', 'Gohir.D08G192600' => 'ghi', 'Gohir.D09G189200' => 'ghi', 'Gohir.D10G212000' => 'ghi', 'Gohir.D11G085200' => 'ghi', 'Gohir.D11G346400' => 'ghi', 'Gohir.D12G104800' => 'ghi', 'Gorai.001G151300' => 'gra', 'Gorai.001G174100' => 'gra', 'Gorai.002G257000' => 'gra', 'Gorai.004G202600' => 'gra', 'Gorai.007G090900' => 'gra', 'Gorai.007G376700' => 'gra', 'Gorai.008G114100' => 'gra', 'Gorai.011G237900' => 'gra', 'GSVIVG01005450001' => 'vvi', 'GSVIVG01016232001' => 'vvi', 'GSVIVG01026157001' => 'vvi', 'GSVIVG01027419001' => 'vvi', 'GSVIVG01027631001' => 'vvi', 'GSVIVG01034143001' => 'vvi', 'HanXRQChr03g0093921' => 'han', 'HanXRQChr04g0120001' => 'han', 'HanXRQChr04g0122561' => 'han', 'HanXRQChr09g0246851' => 'han', 'HanXRQChr10g0293311' => 'han', 'HanXRQChr13g0425231' => 'han', 'HanXRQChr16g0532571' => 'han', 'Haze_09050' => 'cav', 'Haze_15715' => 'cav', 'Haze_15716' => 'cav', 'Haze_16803' => 'cav', 'Haze_16850' => 'cav', 'Hma1.2p1_0301F.1_g118655' => 'hma', 'Hma1.2p1_0309F.1_g120590' => 'hma', 'Hma1.2p1_0936F.1_g238900' => 'hma', 'Hma1.2p1_3552F.1_g336740' => 'hma', 'HPP92_003520' => 'vpl', 'HPP92_006628' => 'vpl', 'HPP92_006645' => 'vpl', 'HPP92_014669' => 'vpl', 'HPP92_015077' => 'vpl', 'Hund16742' => 'sun', 'Hund17022' => 'sun', 'Lalb_Chr02g0152131' => 'lal', 'Lalb_Chr05g0225371' => 'lal', 'Lalb_Chr07g0189841' => 'lal', 'Lalb_Chr07g0192961' => 'lal', 'Lalb_Chr12g0208221' => 'lal', 'Lalb_Chr13g0291211' => 'lal', 'Lalb_Chr13g0291781' => 'lal', 'Lalb_Chr18g0044651' => 'lal', 'Lalb_Chr21g0313731' => 'lal', 'Lj1g0022533' => 'lja', 'Lj2A18T50' => 'lonja', 'Lj2A92G93' => 'lonja', 'Lj3A965T73' => 'lonja', 'Lj3g0000673' => 'lja', 'Lj3g0002666' => 'lja', 'Lj4g0016985' => 'lja', 'Lj5g0003625' => 'lja', 'Lj7A529G36' => 'lonja', 'Lj9A569T49' => 'lonja', 'Lj9A604T63' => 'lonja', 'Lsat_1_v5_gn_3_132060' => 'lsa', 'Lsat_1_v5_gn_4_68941' => 'lsa', 'Lsat_1_v5_gn_5_95580' => 'lsa', 'Lsat_1_v5_gn_7_161' => 'lsa', 'Lsat_1_v5_gn_7_7041' => 'lsa', 'Lsat_1_v5_gn_9_33481' => 'lsa', 'Lsat_1_v5_gn_9_68260' => 'lsa', 'Manes.01G073100' => 'mes', 'Manes.01G266300' => 'mes', 'Manes.02G033300' => 'mes', 'Manes.05G017900' => 'mes', 'Manes.05G046100' => 'mes', 'Manes.08G080900' => 'mes', 'Manes.10G049400' => 'mes', 'Mapoly0009s0186' => 'mpo', 'Mapoly0036s0118' => 'mpo', 'Mapoly0101s0046' => 'mpo', 'MBI04_g30218_MAGBIO' => 'mbi', 'MBI04_g35564_MAGBIO' => 'mbi', 'MBI12_g34011_MAGBIO' => 'mbi', 'MBI14_g04655_MAGBIO' => 'mbi', 'MCO07G653' => 'mco', 'MCO10G173' => 'mco', 'MD01G1087100' => 'mdo', 'MD01G1104200' => 'mdo', 'MD02G1205100' => 'mdo', 'MD04G1079200' => 'mdo', 'MD04G1131400' => 'mdo', 'MD07G1121600' => 'mdo', 'MD07G1157300' => 'mdo', 'MD07G1171000' => 'mdo', 'MD12G1144500' => 'mdo', 'Medtr1g094610' => 'mtr', 'Medtr4g021795' => 'mtr', 'Medtr4g023760' => 'mtr', 'Medtr7g118050' => 'mtr', 'MELO3C005582.2' => 'cme', 'MELO3C005989.2' => 'cme', 'MELO3C006192.2' => 'cme', 'MELO3C009248.2' => 'cme', 'MELO3C019817.2' => 'cme', 'Migut.B01625' => 'egut', 'Migut.B01915' => 'egut', 'Migut.F01721' => 'egut', 'Migut.J00314' => 'egut', 'MSTRG.20742' => 'ama', 'MSTRG.8134' => 'ama', 'Nitab4.5_0000096g0010' => 'nta', 'Nitab4.5_0000202g0030' => 'nta', 'Nitab4.5_0000216g0370' => 'nta', 'Nitab4.5_0000457g0230' => 'nta', 'Nitab4.5_0001702g0170' => 'nta', 'Nitab4.5_0003607g0010' => 'nta', 'Nitab4.5_0004917g0020' => 'nta', 'Nitab4.5_0007059g0010' => 'nta', 'Nitab4.5_0007184g0010' => 'nta', 'Nitab4.5_0007346g0020' => 'nta', 'Nn1g00410' => 'nnu', 'Nn1g01252' => 'nnu', 'Nn2g11168' => 'nnu', 'Nn2g13403' => 'nnu', 'Nn2g13760' => 'nnu', 'Nn4g26380' => 'nnu', 'Oeu000806.2' => 'oeu', 'Oeu005788.1' => 'oeu', 'Oeu006900.3' => 'oeu', 'Oeu007797.1' => 'oeu', 'Oeu011932.1' => 'oeu', 'Oeu022739.1' => 'oeu', 'Oeu037918.1' => 'oeu', 'Oeu055490.2' => 'oeu', 'Os01g0844400' => 'osa', 'Os02g0819100' => 'osa', 'Os03g0804300' => 'osa', 'Os05g0458000' => 'osa', 'Os07g0467800' => 'osa', 'Os12g0602200' => 'osa', 'Peaxi162Scf00013g03444' => 'pax', 'Peaxi162Scf00094g01120' => 'pax', 'Peaxi162Scf00191g01211' => 'pax', 'Peaxi162Scf00238g01110' => 'pax', 'Peaxi162Scf00330g00719' => 'pax', 'Peaxi162Scf00627g00018' => 'pax', 'PGR031G2686' => 'pgr', 'PGR042G0809' => 'pgr', 'PGR142G0193' => 'pgr', 'PGSC0003DMG400011066' => 'stu', 'PGSC0003DMG400012041' => 'stu', 'PGSC0003DMG400013678' => 'stu', 'PGSC0003DMG400023477' => 'stu', 'PGSC0003DMG400025956' => 'stu', 'PGSC0003DMG401019151' => 'stu', 'Phvul.006G116400' => 'pvu', 'Phvul.007G097300' => 'pvu', 'Phvul.010G015000' => 'pvu', 'Phvul.010G083900' => 'pvu', 'Potri.001G117100' => 'ptr', 'Potri.002G147300' => 'ptr', 'Potri.003G115600' => 'ptr', 'Potri.006G087400' => 'ptr', 'Potri.010G226100' => 'ptr', 'Potri.014G069200' => 'ptr', 'Potri.014G104000' => 'ptr', 'Potri.016G100200' => 'ptr', 'Pp3c10_20450' => 'ppa', 'Pp3c1_42400' => 'ppa', 'Pp3c3_24390' => 'ppa', 'Pp3c3_2860' => 'ppa', 'PRCOL_00003193' => 'pco', 'Prupe.2G144500' => 'ppe', 'Prupe.2G195700' => 'ppe', 'Prupe.2G209800' => 'ppe', 'Prupe.5G080000' => 'ppe', 'Prupe.6G257900' => 'ppe', 'Psat3g001160' => 'psa', 'Psat6g181880' => 'psa', 'Psat7g233720' => 'psa', 'PSO063G7587' => 'pso', 'PSO339G2145' => 'pso', 'PSO339G3369' => 'pso', 'PSO478G2747' => 'pso', 'PSO513G0140' => 'pso', 'PSO782G1614' => 'pso', 'PSO782G4889' => 'pso', 'PSO782G5485' => 'pso', 'PSO801G0241' => 'pso', 'QL07p048854' => 'qlo', 'QL08p046745' => 'qlo', 'QL08p052606' => 'qlo', 'QL08p053414' => 'qlo', 'QL08p054868' => 'qlo', 'RcHm_v2.0_Chr1g0350251' => 'rch', 'RcHm_v2.0_Chr1g0360851' => 'rch', 'RcHm_v2.0_Chr1g0362791' => 'rch', 'RcHm_v2.0_Chr3g0466281' => 'rch', 'RcHm_v2.0_Chr7g0201481' => 'rch', 'Rhsim01G0148600' => 'rsi', 'Rhsim05G0194400' => 'rsi', 'Rhsim07G0000700' => 'rsi', 'Rhsim07G0000800' => 'rsi', 'Rhsim07G0027900' => 'rsi', 'Rhsim09G0149500' => 'rsi', 'RhsimUnG0186900' => 'rsi', 'Sabra01G0089900' => 'sbr', 'Sabra02G0114700' => 'sbr', 'Sabra02G0116300' => 'sbr', 'Sabra03G0080100' => 'sbr', 'Sabra08G0024300' => 'sbr', 'Sabra10G0174300' => 'sbr', 'Sabra14G0048900' => 'sbr', 'Sabra14G0076500' => 'sbr', 'SalBow5G2513' => 'sbo', 'Sc01g0002300' => 'sci', 'Sc01g0004450' => 'sci', 'Sc06g0001680' => 'sci', 'Sc23g0003580' => 'sci', 'Sed0000913' => 'sed', 'Sed0001655' => 'sed', 'Sed0007745' => 'sed', 'Sed0010951' => 'sed', 'Sed0017599' => 'sed', 'Sed0021405' => 'sed', 'Sed0022810' => 'sed', 'SEGI_07099' => 'sgi', 'SEGI_11931' => 'sgi', 'SEGI_13187' => 'sgi', 'SEGI_29958' => 'sgi', 'SEGI_36351' => 'sgi', 'SGA_v2.0_scaffold126G33770' => 'sas', 'SGA_v2.0_scaffold153G37003' => 'sas', 'SGA_v2.0_scaffold2G01359' => 'sas', 'SGA_v2.0_scaffold5G03064' => 'sas', 'SGA_v2.0_scaffold95G28903' => 'sas', 'SHI12701' => 'shi', 'SHI26410' => 'shi', 'SHI38997' => 'shi', 'SHI53759' => 'shi', 'SHI53886' => 'shi', 'SHI54714' => 'shi', 'SMO011G0041' => 'smo', 'SMO146G0251' => 'smo', 'SMO160G0004' => 'smo', 'SMO174G0057' => 'smo', 'SMO244G0089' => 'smo', 'SMO296G0011' => 'smo', 'Solyc01g091280.3' => 'sly', 'Solyc05g047610.3' => 'sly', 'Solyc05g047640.3' => 'sly', 'Solyc05g055630.3' => 'sly', 'Solyc10g018160.2' => 'sly', 'Solyc10g084820.2' => 'sly', 'Solyc10g086565.2' => 'sly', 'Sopen01g037030' => 'spe', 'Sopen05g027920' => 'spe', 'Sopen05g034070' => 'spe', 'Sopen10g007260' => 'spe', 'Sopen10g034260' => 'spe', 'Sopen10g035950' => 'spe', 'Sp3g07710' => 'spa', 'Sp4g27420' => 'spa', 'Sp5g02450' => 'spa', 'Sp6g01280' => 'spa', 'Sp6g38480' => 'spa', 'Sp7g20780' => 'spa', 'TAR374G1413' => 'tar', 'TAR623G1777' => 'tar', 'TAR629G2370' => 'tar', 'TAR633G1759' => 'tar', 'TAR636G3387' => 'tar', 'THA.LOC104802447' => 'tha', 'THA.LOC104813916' => 'tha', 'THA.LOC104816423' => 'tha', 'THA.LOC104817246' => 'tha', 'THA.LOC104825895' => 'tha', 'Thecc.01G335200' => 'tca', 'Thecc.01G377400' => 'tca', 'Thecc.03G262200' => 'tca', 'Thecc.05G036800' => 'tca', 'Thecc.10G080500' => 'tca', 'Thecc.10G080800' => 'tca', 'Thhalv10001560m.g' => 'esa', 'Thhalv10006120m.g' => 'esa', 'Thhalv10014375m.g' => 'esa', 'Thhalv10021264m.g' => 'esa', 'Thhalv10028856m.g' => 'esa', 'TPR.G1914' => 'tpr', 'TPR.G4757' => 'tpr', 'TPR.G5595' => 'tpr', 'TWI14G0952' => 'twi', 'TWI14G1307' => 'twi', 'TWI38G2143' => 'twi', 'TWI59G0826' => 'twi', 'TWI77G0527' => 'twi', 'TWI81G0150' => 'twi', 'unitig_21.g21018' => 'ugi', 'unitig_26.g9725' => 'ugi', 'unitig_744.g24653' => 'ugi', 'unitig_749.g13778' => 'ugi', 'unitig_899.g15035' => 'ugi', 'vmacro04296' => 'vma', 'vmacro04852' => 'vma', 'vmacro13404' => 'vma', 'vmacro20169' => 'vma', 'vmacro21014' => 'vma', 'VMungo0331G0237' => 'vmu', 'VMungo0331G0706' => 'vmu', 'VMungo0331G1361' => 'vmu', 'VMungo0331G1489' => 'vmu', 'VMungo0540G1037' => 'vmu', 'VMungo0720G2487' => 'vmu', 'VMungo0720G2721' => 'vmu', 'Zm00001eb086860' => 'zma', 'Zm00001eb104760' => 'zma', 'Zm00001eb148220' => 'zma', 'Zm00001eb259030' => 'zma', 'Zm00001eb289590' => 'zma', 'Zm00001eb420150' => 'zma' ) $gf_id = 'HOM05D000968' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000968' ) $data_identifier = 'HOM05D000968' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 19, 'bol' => (int) 9, 'bra' => (int) 12, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 5, 'ccan' => (int) 7, 'cde' => (int) 5, 'cfa' => (int) 8, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 4, 'dca' => (int) 5, 'din' => (int) 5, 'dzi' => (int) 12, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 25, 'fve' => (int) 5, 'gma' => (int) 9, 'ghi' => (int) 18, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 7, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 5, 'sun' => (int) 2, 'lal' => (int) 9, 'lja' => (int) 5, 'lonja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 9, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 2, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 3, 'stu' => (int) 6, 'pvu' => (int) 4, 'ptr' => (int) 8, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 3, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 1, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 5, 'sas' => (int) 5, 'shi' => (int) 6, 'smo' => (int) 6, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 3, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420150' $species_info = array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ) $local_species = 'ama' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000968', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p31690' => 'bna', 'A03p36040' => 'bna', 'A03p53730' => 'bna', 'A04p01410' => 'bna', 'A05p05420' => 'bna', 'A05p39630' => 'bna', 'A05p39640' => 'bna', 'A09p00970' => 'bna', 'A09p53060' => 'bna', 'A10p31890' => 'bna', 'Aa31LG10G15040' => 'aar', 'Aa31LG1G21090' => 'aar', 'Aa31LG1G26900' => 'aar', 'Aa31LG3G1820' => 'aar', 'Aa31LG5G1100' => 'aar', 'Aa31LG6G4740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2265' => 'aag', 'Actinidia07998' => 'ach', 'Actinidia11266' => 'ach', 'Actinidia12682' => 'ach', 'Actinidia26479' => 'ach', 'Actinidia31406' => 'ach', 'Actinidia32437' => 'ach', 'Actinidia38862' => 'ach', 'Ah.05g174230' => 'amhyb', 'Ah.05g179070' => 'amhyb', 'Ah.05g179090' => 'amhyb', 'Ah.12g059950' => 'amhyb', 'AL3G20480' => 'aly', 'AL4G44520' => 'aly', 'AL5G43110' => 'aly', 'AL6G13890' => 'aly', 'AL6G52620' => 'aly', 'AL7G30830' => 'aly', 'Aqoxy1G00899' => 'aox', 'Aqoxy5G04333' => 'aox', 'Aqoxy7G00641' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3IZ0NN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4EF6AW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W9P8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79GA3M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C43NQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFCU6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G95YVJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCHK29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LU1UG8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX91RN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGB4B1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8DA0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9H7JI' => 'arhy', 'AT3G09320' => 'ath', 'AT3G60800' => 'ath', 'AT4G00840' => 'ath', 'AT4G22750' => 'ath', 'AT5G04270' => 'ath', 'ATR0090G003' => 'atr', 'ATR0559G349' => 'atr', 'ATR0680G261' => 'atr', 'ATR0810G048' => 'atr', 'Atru.chr12.831' => 'acertr', 'Atru.chr5.303' => 'acertr', 'Atru.chr5.748' => 'acertr', 'Atru.chr8.1999' => 'acertr', 'Atru.chr9.1436' => 'acertr', 'AUR62004211' => 'cqu', 'AUR62004548' => 'cqu', 'AUR62013637' => 'cqu', 'AUR62022662' => 'cqu', 'AUR62025777' => 'cqu', 'AUR62042386' => 'cqu', 'BcaB01g02310' => 'bca', 'BcaB01g06062' => 'bca', 'BcaB02g08975' => 'bca', 'BcaB02g08980' => 'bca', 'BcaC01g04228' => 'bca', 'BcaC01g06830' => 'bca', 'BcaC02g10186' => 'bca', 'BcaC02g12214' => 'bca', 'BcaC04g24101' => 'bca', 'BcaC05g29520' => 'bca', 'BcaC05g29661' => 'bca', 'BcaC06g32130' => 'bca', 'BcaC06g32131' => 'bca', 'BcaC07g40601' => 'bca', 'BcaC07g42641' => 'bca', 'BcaNung01038' => 'bca', 'BcaNung01676' => 'bca', 'BcaNung02480' => 'bca', 'BcaNung07376' => 'bca', 'BolC3t16146H' => 'bol', 'BolC3t16637H' => 'bol', 'BolC4t22257H' => 'bol', 'BolC4t24728H' => 'bol', 'BolC5t34517H' => 'bol', 'BolC7t45703H' => 'bol', 'BolC8t51166H' => 'bol', 'BolC9t53038H' => 'bol', 'BolC9t60000H' => 'bol', 'BraA01t01345Z' => 'bra', 'BraA01t01346Z' => 'bra', 'BraA01t01348Z' => 'bra', 'BraA03t12347Z' => 'bra', 'BraA03t12775Z' => 'bra', 'BraA03t14439Z' => 'bra', 'BraA04t15860Z' => 'bra', 'BraA05t19511Z' => 'bra', 'BraA05t22746Z' => 'bra', 'BraA09t35767Z' => 'bra', 'BraA09t40732Z' => 'bra', 'BraA10t45233Z' => 'bra', 'C03p38720' => 'bna', 'C03p43680' => 'bna', 'C04p06350' => 'bna', 'C04p31800' => 'bna', 'C05p58680' => 'bna', 'C07p52110' => 'bna', 'C08p35760' => 'bna', 'C09p01050' => 'bna', 'C09p72600' => 'bna', 'CAN.G106.2' => 'can', 'CAN.G1482.1' => 'can', 'CAN.G324.12' => 'can', 'CAN.G388.20' => 'can', 'CAN.G412.7' => 'can', 'CAN.G694.32' => 'can', 'CAN.G92.12' => 'can', 'CANSAT11G2353' => 'cansat', 'CANSAT21G1398' => 'cansat', 'CANSAT56G2456' => 'cansat', 'CANSAT56G3031' => 'cansat', 'CANSAT56G4539' => 'cansat', 'CARHR083680' => 'chi', 'CARHR171190' => 'chi', 'CARHR209010' => 'chi', 'CARHR229680' => 'chi', 'CARHR249490' => 'chi', 'Carub.0003s0844' => 'cru', 'Carub.0005s2755' => 'cru', 'Carub.0006s0322' => 'cru', 'Carub.0006s3586' => 'cru', 'Carub.0007s1855' => 'cru', 'Ca_07808_v3' => 'car', 'Ca_09535_v3' => 'car', 'Ca_10548_v3' => 'car', 'Ca_19913_v3' => 'car', 'Ca_19916_v3' => 'car', 'Ca_19975_v3' => 'car', 'CBR_g22876' => 'cbr', 'CBR_g22879' => 'cbr', 'CBR_g38491' => 'cbr', 'CBR_g54185' => 'cbr', 'CBR_g54190' => 'cbr', 'Cc02_g11020' => 'ccan', 'Cc02_g23920' => 'ccan', 'Cc02_g39860' => 'ccan', 'Cc02_g39870' => 'ccan', 'Cc03_g06760' => 'ccan', 'Cc06_g02450' => 'ccan', 'Cc09_g09450' => 'ccan', 'CDE02G1959' => 'cde', 'CDE04G0600' => 'cde', 'CDE07G1996' => 'cde', 'CDE07G2078' => 'cde', 'CDE11G0611' => 'cde', 'Cfa001683' => 'cfa', 'Cfa001734' => 'cfa', 'Cfa001737' => 'cfa', 'Cfa003751' => 'cfa', 'Cfa012019' => 'cfa', 'Cfa017353' => 'cfa', 'Cfa017732' => 'cfa', 'Cfa022464' => 'cfa', 'Ciclev10012400m.g' => 'ccl', 'Ciclev10021242m.g' => 'ccl', 'Ciclev10021302m.g' => 'ccl', 'Ciclev10021463m.g' => 'ccl', 'Ciclev10032359m.g' => 'ccl', 'CiPaw.01G081000' => 'cil', 'CiPaw.01G262500' => 'cil', 'CiPaw.01G269800' => 'cil', 'CiPaw.02G168400' => 'cil', 'CiPaw.05G119500' => 'cil', 'CiPaw.11G147300' => 'cil', 'ClCG01G003630' => 'cla', 'ClCG05G000510' => 'cla', 'ClCG05G002300' => 'cla', 'ClCG08G007650' => 'cla', 'ClCG10G021250' => 'cla', 'COL.COLO4_06218' => 'col', 'COL.COLO4_12538' => 'col', 'COL.COLO4_14775' => 'col', 'COL.COLO4_23875' => 'col', 'Cpa.g.sc141.16' => 'cpa', 'Cpa.g.sc169.16' => 'cpa', 'Cpa.g.sc244.4' => 'cpa', 'Cpa.g.sc244.5' => 'cpa', 'Cpa.g.sc29.87' => 'cpa', 'Cpa.g.sc53.115' => 'cpa', 'Cre03.g207502' => 'cre', 'Cre06.g277000' => 'cre', 'Cre09.g394050' => 'cre', 'CsaV3_3G007680' => 'csa', 'CsaV3_3G009710' => 'csa', 'CsaV3_3G034790' => 'csa', 'CsaV3_5G003750' => 'csa', 'CsaV3_6G036620' => 'csa', 'CSS0002288' => 'camsi', 'CSS0011250' => 'camsi', 'CSS0021619' => 'camsi', 'CSS0046701' => 'camsi', 'DCAR_006420' => 'dca', 'DCAR_006865' => 'dca', 'DCAR_008558' => 'dca', 'DCAR_028754' => 'dca', 'DCAR_028755' => 'dca', 'Dinv31218' => 'din', 'Dinv32371' => 'din', 'Dinv34250' => 'din', 'Dinv37156' => 'din', 'Dinv43704' => 'din', 'Duzib093G1811' => 'dzi', 'Duzib106G1622' => 'dzi', 'Duzib114G0504' => 'dzi', 'Duzib128G0338' => 'dzi', 'Duzib128G1577' => 'dzi', 'Duzib133G0104' => 'dzi', 'Duzib133G1080' => 'dzi', 'Duzib138G0324' => 'dzi', 'Duzib138G0394' => 'dzi', 'Duzib205G0122' => 'dzi', 'Duzib268G1020' => 'dzi', 'Duzib268G1359' => 'dzi', 'ECA232G3929' => 'eca', 'ECA236G2210' => 'eca', 'ECA236G2287' => 'eca', 'ECA240G4568' => 'eca', 'ECA247G0894' => 'eca', 'EL10Ac1g00200' => 'bvu', 'EL10Ac1g00886' => 'bvu', 'EL10As1g23091' => 'bvu', 'EL10As1g23092' => 'bvu', 'Eucgr.A01284' => 'egr', 'Eucgr.A01285' => 'egr', 'Eucgr.D02456' => 'egr', 'Eucgr.E00018' => 'egr', 'Eucgr.E01439' => 'egr', 'Eucgr.G02859' => 'egr', 'FAN01G0168' => 'fan', 'FAN01G0453' => 'fan', 'FAN01G2761' => 'fan', 'FAN02G1239' => 'fan', 'FAN03G0645' => 'fan', 'FAN03G2707' => 'fan', 'FAN03G2978' => 'fan', 'FAN04G0227' => 'fan', 'FAN06G0091' => 'fan', 'FAN06G1418' => 'fan', 'FAN06G1512' => 'fan', 'FAN06G1986' => 'fan', 'FAN06G2905' => 'fan', 'FAN06G4325' => 'fan', 'FAN08G0033' => 'fan', 'FAN09G0642' => 'fan', 'FAN10G1763' => 'fan', 'FAN10G2026' => 'fan', 'FAN10G2513' => 'fan', 'FAN10G3402' => 'fan', 'FAN10G3564' => 'fan', 'FAN10G3987' => 'fan', 'FAN13G1490' => 'fan', 'FAN14G5857' => 'fan', 'FAN18G1188' => 'fan', 'FvH4_5g00750' => 'fve', 'FvH4_6g13410' => 'fve', 'FvH4_7g11740' => 'fve', 'FvH4_7g17410' => 'fve', 'FvH4_7g18860' => 'fve', 'Glyma.01G099100' => 'gma', 'Glyma.01G142300' => 'gma', 'Glyma.03G025500' => 'gma', 'Glyma.03G069700' => 'gma', 'Glyma.03G260000' => 'gma', 'Glyma.09G269800' => 'gma', 'Glyma.10G208700' => 'gma', 'Glyma.18G220400' => 'gma', 'Glyma.20G182000' => 'gma', 'Gohir.A01G221726' => 'ghi', 'Gohir.A07G134600' => 'ghi', 'Gohir.A07G146000' => 'ghi', 'Gohir.A08G173900' => 'ghi', 'Gohir.A09G194900' => 'ghi', 'Gohir.A10G204100' => 'ghi', 'Gohir.A11G080600' => 'ghi', 'Gohir.A11G327500' => 'ghi', 'Gohir.A12G101800' => 'ghi', 'Gohir.D01G211200' => 'ghi', 'Gohir.D07G139200' => 'ghi', 'Gohir.D07G152100' => 'ghi', 'Gohir.D08G192600' => 'ghi', 'Gohir.D09G189200' => 'ghi', 'Gohir.D10G212000' => 'ghi', 'Gohir.D11G085200' => 'ghi', 'Gohir.D11G346400' => 'ghi', 'Gohir.D12G104800' => 'ghi', 'Gorai.001G151300' => 'gra', 'Gorai.001G174100' => 'gra', 'Gorai.002G257000' => 'gra', 'Gorai.004G202600' => 'gra', 'Gorai.007G090900' => 'gra', 'Gorai.007G376700' => 'gra', 'Gorai.008G114100' => 'gra', 'Gorai.011G237900' => 'gra', 'GSVIVG01005450001' => 'vvi', 'GSVIVG01016232001' => 'vvi', 'GSVIVG01026157001' => 'vvi', 'GSVIVG01027419001' => 'vvi', 'GSVIVG01027631001' => 'vvi', 'GSVIVG01034143001' => 'vvi', 'HanXRQChr03g0093921' => 'han', 'HanXRQChr04g0120001' => 'han', 'HanXRQChr04g0122561' => 'han', 'HanXRQChr09g0246851' => 'han', 'HanXRQChr10g0293311' => 'han', 'HanXRQChr13g0425231' => 'han', 'HanXRQChr16g0532571' => 'han', 'Haze_09050' => 'cav', 'Haze_15715' => 'cav', 'Haze_15716' => 'cav', 'Haze_16803' => 'cav', 'Haze_16850' => 'cav', 'Hma1.2p1_0301F.1_g118655' => 'hma', 'Hma1.2p1_0309F.1_g120590' => 'hma', 'Hma1.2p1_0936F.1_g238900' => 'hma', 'Hma1.2p1_3552F.1_g336740' => 'hma', 'HPP92_003520' => 'vpl', 'HPP92_006628' => 'vpl', 'HPP92_006645' => 'vpl', 'HPP92_014669' => 'vpl', 'HPP92_015077' => 'vpl', 'Hund16742' => 'sun', 'Hund17022' => 'sun', 'Lalb_Chr02g0152131' => 'lal', 'Lalb_Chr05g0225371' => 'lal', 'Lalb_Chr07g0189841' => 'lal', 'Lalb_Chr07g0192961' => 'lal', 'Lalb_Chr12g0208221' => 'lal', 'Lalb_Chr13g0291211' => 'lal', 'Lalb_Chr13g0291781' => 'lal', 'Lalb_Chr18g0044651' => 'lal', 'Lalb_Chr21g0313731' => 'lal', 'Lj1g0022533' => 'lja', 'Lj2A18T50' => 'lonja', 'Lj2A92G93' => 'lonja', 'Lj3A965T73' => 'lonja', 'Lj3g0000673' => 'lja', 'Lj3g0002666' => 'lja', 'Lj4g0016985' => 'lja', 'Lj5g0003625' => 'lja', 'Lj7A529G36' => 'lonja', 'Lj9A569T49' => 'lonja', 'Lj9A604T63' => 'lonja', 'Lsat_1_v5_gn_3_132060' => 'lsa', 'Lsat_1_v5_gn_4_68941' => 'lsa', 'Lsat_1_v5_gn_5_95580' => 'lsa', 'Lsat_1_v5_gn_7_161' => 'lsa', 'Lsat_1_v5_gn_7_7041' => 'lsa', 'Lsat_1_v5_gn_9_33481' => 'lsa', 'Lsat_1_v5_gn_9_68260' => 'lsa', 'Manes.01G073100' => 'mes', 'Manes.01G266300' => 'mes', 'Manes.02G033300' => 'mes', 'Manes.05G017900' => 'mes', 'Manes.05G046100' => 'mes', 'Manes.08G080900' => 'mes', 'Manes.10G049400' => 'mes', 'Mapoly0009s0186' => 'mpo', 'Mapoly0036s0118' => 'mpo', 'Mapoly0101s0046' => 'mpo', 'MBI04_g30218_MAGBIO' => 'mbi', 'MBI04_g35564_MAGBIO' => 'mbi', 'MBI12_g34011_MAGBIO' => 'mbi', 'MBI14_g04655_MAGBIO' => 'mbi', 'MCO07G653' => 'mco', 'MCO10G173' => 'mco', 'MD01G1087100' => 'mdo', 'MD01G1104200' => 'mdo', 'MD02G1205100' => 'mdo', 'MD04G1079200' => 'mdo', 'MD04G1131400' => 'mdo', 'MD07G1121600' => 'mdo', 'MD07G1157300' => 'mdo', 'MD07G1171000' => 'mdo', 'MD12G1144500' => 'mdo', 'Medtr1g094610' => 'mtr', 'Medtr4g021795' => 'mtr', 'Medtr4g023760' => 'mtr', 'Medtr7g118050' => 'mtr', 'MELO3C005582.2' => 'cme', 'MELO3C005989.2' => 'cme', 'MELO3C006192.2' => 'cme', 'MELO3C009248.2' => 'cme', 'MELO3C019817.2' => 'cme', 'Migut.B01625' => 'egut', 'Migut.B01915' => 'egut', 'Migut.F01721' => 'egut', 'Migut.J00314' => 'egut', 'MSTRG.20742' => 'ama', 'MSTRG.8134' => 'ama', 'Nitab4.5_0000096g0010' => 'nta', 'Nitab4.5_0000202g0030' => 'nta', 'Nitab4.5_0000216g0370' => 'nta', 'Nitab4.5_0000457g0230' => 'nta', 'Nitab4.5_0001702g0170' => 'nta', 'Nitab4.5_0003607g0010' => 'nta', 'Nitab4.5_0004917g0020' => 'nta', 'Nitab4.5_0007059g0010' => 'nta', 'Nitab4.5_0007184g0010' => 'nta', 'Nitab4.5_0007346g0020' => 'nta', 'Nn1g00410' => 'nnu', 'Nn1g01252' => 'nnu', 'Nn2g11168' => 'nnu', 'Nn2g13403' => 'nnu', 'Nn2g13760' => 'nnu', 'Nn4g26380' => 'nnu', 'Oeu000806.2' => 'oeu', 'Oeu005788.1' => 'oeu', 'Oeu006900.3' => 'oeu', 'Oeu007797.1' => 'oeu', 'Oeu011932.1' => 'oeu', 'Oeu022739.1' => 'oeu', 'Oeu037918.1' => 'oeu', 'Oeu055490.2' => 'oeu', 'Os01g0844400' => 'osa', 'Os02g0819100' => 'osa', 'Os03g0804300' => 'osa', 'Os05g0458000' => 'osa', 'Os07g0467800' => 'osa', 'Os12g0602200' => 'osa', 'Peaxi162Scf00013g03444' => 'pax', 'Peaxi162Scf00094g01120' => 'pax', 'Peaxi162Scf00191g01211' => 'pax', 'Peaxi162Scf00238g01110' => 'pax', 'Peaxi162Scf00330g00719' => 'pax', 'Peaxi162Scf00627g00018' => 'pax', 'PGR031G2686' => 'pgr', 'PGR042G0809' => 'pgr', 'PGR142G0193' => 'pgr', 'PGSC0003DMG400011066' => 'stu', 'PGSC0003DMG400012041' => 'stu', 'PGSC0003DMG400013678' => 'stu', 'PGSC0003DMG400023477' => 'stu', 'PGSC0003DMG400025956' => 'stu', 'PGSC0003DMG401019151' => 'stu', 'Phvul.006G116400' => 'pvu', 'Phvul.007G097300' => 'pvu', 'Phvul.010G015000' => 'pvu', 'Phvul.010G083900' => 'pvu', 'Potri.001G117100' => 'ptr', 'Potri.002G147300' => 'ptr', 'Potri.003G115600' => 'ptr', 'Potri.006G087400' => 'ptr', 'Potri.010G226100' => 'ptr', 'Potri.014G069200' => 'ptr', 'Potri.014G104000' => 'ptr', 'Potri.016G100200' => 'ptr', 'Pp3c10_20450' => 'ppa', 'Pp3c1_42400' => 'ppa', 'Pp3c3_24390' => 'ppa', 'Pp3c3_2860' => 'ppa', 'PRCOL_00003193' => 'pco', 'Prupe.2G144500' => 'ppe', 'Prupe.2G195700' => 'ppe', 'Prupe.2G209800' => 'ppe', 'Prupe.5G080000' => 'ppe', 'Prupe.6G257900' => 'ppe', 'Psat3g001160' => 'psa', 'Psat6g181880' => 'psa', 'Psat7g233720' => 'psa', 'PSO063G7587' => 'pso', 'PSO339G2145' => 'pso', 'PSO339G3369' => 'pso', 'PSO478G2747' => 'pso', 'PSO513G0140' => 'pso', 'PSO782G1614' => 'pso', 'PSO782G4889' => 'pso', 'PSO782G5485' => 'pso', 'PSO801G0241' => 'pso', 'QL07p048854' => 'qlo', 'QL08p046745' => 'qlo', 'QL08p052606' => 'qlo', 'QL08p053414' => 'qlo', 'QL08p054868' => 'qlo', 'RcHm_v2.0_Chr1g0350251' => 'rch', 'RcHm_v2.0_Chr1g0360851' => 'rch', 'RcHm_v2.0_Chr1g0362791' => 'rch', 'RcHm_v2.0_Chr3g0466281' => 'rch', 'RcHm_v2.0_Chr7g0201481' => 'rch', 'Rhsim01G0148600' => 'rsi', 'Rhsim05G0194400' => 'rsi', 'Rhsim07G0000700' => 'rsi', 'Rhsim07G0000800' => 'rsi', 'Rhsim07G0027900' => 'rsi', 'Rhsim09G0149500' => 'rsi', 'RhsimUnG0186900' => 'rsi', 'Sabra01G0089900' => 'sbr', 'Sabra02G0114700' => 'sbr', 'Sabra02G0116300' => 'sbr', 'Sabra03G0080100' => 'sbr', 'Sabra08G0024300' => 'sbr', 'Sabra10G0174300' => 'sbr', 'Sabra14G0048900' => 'sbr', 'Sabra14G0076500' => 'sbr', 'SalBow5G2513' => 'sbo', 'Sc01g0002300' => 'sci', 'Sc01g0004450' => 'sci', 'Sc06g0001680' => 'sci', 'Sc23g0003580' => 'sci', 'Sed0000913' => 'sed', 'Sed0001655' => 'sed', 'Sed0007745' => 'sed', 'Sed0010951' => 'sed', 'Sed0017599' => 'sed', 'Sed0021405' => 'sed', 'Sed0022810' => 'sed', 'SEGI_07099' => 'sgi', 'SEGI_11931' => 'sgi', 'SEGI_13187' => 'sgi', 'SEGI_29958' => 'sgi', 'SEGI_36351' => 'sgi', 'SGA_v2.0_scaffold126G33770' => 'sas', 'SGA_v2.0_scaffold153G37003' => 'sas', 'SGA_v2.0_scaffold2G01359' => 'sas', 'SGA_v2.0_scaffold5G03064' => 'sas', 'SGA_v2.0_scaffold95G28903' => 'sas', 'SHI12701' => 'shi', 'SHI26410' => 'shi', 'SHI38997' => 'shi', 'SHI53759' => 'shi', 'SHI53886' => 'shi', 'SHI54714' => 'shi', 'SMO011G0041' => 'smo', 'SMO146G0251' => 'smo', 'SMO160G0004' => 'smo', 'SMO174G0057' => 'smo', 'SMO244G0089' => 'smo', 'SMO296G0011' => 'smo', 'Solyc01g091280.3' => 'sly', 'Solyc05g047610.3' => 'sly', 'Solyc05g047640.3' => 'sly', 'Solyc05g055630.3' => 'sly', 'Solyc10g018160.2' => 'sly', 'Solyc10g084820.2' => 'sly', 'Solyc10g086565.2' => 'sly', 'Sopen01g037030' => 'spe', 'Sopen05g027920' => 'spe', 'Sopen05g034070' => 'spe', 'Sopen10g007260' => 'spe', 'Sopen10g034260' => 'spe', 'Sopen10g035950' => 'spe', 'Sp3g07710' => 'spa', 'Sp4g27420' => 'spa', 'Sp5g02450' => 'spa', 'Sp6g01280' => 'spa', 'Sp6g38480' => 'spa', 'Sp7g20780' => 'spa', 'TAR374G1413' => 'tar', 'TAR623G1777' => 'tar', 'TAR629G2370' => 'tar', 'TAR633G1759' => 'tar', 'TAR636G3387' => 'tar', 'THA.LOC104802447' => 'tha', 'THA.LOC104813916' => 'tha', 'THA.LOC104816423' => 'tha', 'THA.LOC104817246' => 'tha', 'THA.LOC104825895' => 'tha', 'Thecc.01G335200' => 'tca', 'Thecc.01G377400' => 'tca', 'Thecc.03G262200' => 'tca', 'Thecc.05G036800' => 'tca', 'Thecc.10G080500' => 'tca', 'Thecc.10G080800' => 'tca', 'Thhalv10001560m.g' => 'esa', 'Thhalv10006120m.g' => 'esa', 'Thhalv10014375m.g' => 'esa', 'Thhalv10021264m.g' => 'esa', 'Thhalv10028856m.g' => 'esa', 'TPR.G1914' => 'tpr', 'TPR.G4757' => 'tpr', 'TPR.G5595' => 'tpr', 'TWI14G0952' => 'twi', 'TWI14G1307' => 'twi', 'TWI38G2143' => 'twi', 'TWI59G0826' => 'twi', 'TWI77G0527' => 'twi', 'TWI81G0150' => 'twi', 'unitig_21.g21018' => 'ugi', 'unitig_26.g9725' => 'ugi', 'unitig_744.g24653' => 'ugi', 'unitig_749.g13778' => 'ugi', 'unitig_899.g15035' => 'ugi', 'vmacro04296' => 'vma', 'vmacro04852' => 'vma', 'vmacro13404' => 'vma', 'vmacro20169' => 'vma', 'vmacro21014' => 'vma', 'VMungo0331G0237' => 'vmu', 'VMungo0331G0706' => 'vmu', 'VMungo0331G1361' => 'vmu', 'VMungo0331G1489' => 'vmu', 'VMungo0540G1037' => 'vmu', 'VMungo0720G2487' => 'vmu', 'VMungo0720G2721' => 'vmu', 'Zm00001eb086860' => 'zma', 'Zm00001eb104760' => 'zma', 'Zm00001eb148220' => 'zma', 'Zm00001eb259030' => 'zma', 'Zm00001eb289590' => 'zma', 'Zm00001eb420150' => 'zma' ), 'gf_id' => 'HOM05D000968', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000968' ), 'data_identifier' => 'HOM05D000968', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000968', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p31690' => 'bna', 'A03p36040' => 'bna', 'A03p53730' => 'bna', 'A04p01410' => 'bna', 'A05p05420' => 'bna', 'A05p39630' => 'bna', 'A05p39640' => 'bna', 'A09p00970' => 'bna', 'A09p53060' => 'bna', 'A10p31890' => 'bna', 'Aa31LG10G15040' => 'aar', 'Aa31LG1G21090' => 'aar', 'Aa31LG1G26900' => 'aar', 'Aa31LG3G1820' => 'aar', 'Aa31LG5G1100' => 'aar', 'Aa31LG6G4740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2265' => 'aag', 'Actinidia07998' => 'ach', 'Actinidia11266' => 'ach', 'Actinidia12682' => 'ach', 'Actinidia26479' => 'ach', 'Actinidia31406' => 'ach', 'Actinidia32437' => 'ach', 'Actinidia38862' => 'ach', 'Ah.05g174230' => 'amhyb', 'Ah.05g179070' => 'amhyb', 'Ah.05g179090' => 'amhyb', 'Ah.12g059950' => 'amhyb', 'AL3G20480' => 'aly', 'AL4G44520' => 'aly', 'AL5G43110' => 'aly', 'AL6G13890' => 'aly', 'AL6G52620' => 'aly', 'AL7G30830' => 'aly', 'Aqoxy1G00899' => 'aox', 'Aqoxy5G04333' => 'aox', 'Aqoxy7G00641' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3IZ0NN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4EF6AW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W9P8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79GA3M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C43NQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFCU6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G95YVJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCHK29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LU1UG8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX91RN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGB4B1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8DA0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9H7JI' => 'arhy', 'AT3G09320' => 'ath', 'AT3G60800' => 'ath', 'AT4G00840' => 'ath', 'AT4G22750' => 'ath', 'AT5G04270' => 'ath', 'ATR0090G003' => 'atr', 'ATR0559G349' => 'atr', 'ATR0680G261' => 'atr', 'ATR0810G048' => 'atr', 'Atru.chr12.831' => 'acertr', 'Atru.chr5.303' => 'acertr', 'Atru.chr5.748' => 'acertr', 'Atru.chr8.1999' => 'acertr', 'Atru.chr9.1436' => 'acertr', 'AUR62004211' => 'cqu', 'AUR62004548' => 'cqu', 'AUR62013637' => 'cqu', 'AUR62022662' => 'cqu', 'AUR62025777' => 'cqu', 'AUR62042386' => 'cqu', 'BcaB01g02310' => 'bca', 'BcaB01g06062' => 'bca', 'BcaB02g08975' => 'bca', 'BcaB02g08980' => 'bca', 'BcaC01g04228' => 'bca', 'BcaC01g06830' => 'bca', 'BcaC02g10186' => 'bca', 'BcaC02g12214' => 'bca', 'BcaC04g24101' => 'bca', 'BcaC05g29520' => 'bca', 'BcaC05g29661' => 'bca', 'BcaC06g32130' => 'bca', 'BcaC06g32131' => 'bca', 'BcaC07g40601' => 'bca', 'BcaC07g42641' => 'bca', 'BcaNung01038' => 'bca', 'BcaNung01676' => 'bca', 'BcaNung02480' => 'bca', 'BcaNung07376' => 'bca', 'BolC3t16146H' => 'bol', 'BolC3t16637H' => 'bol', 'BolC4t22257H' => 'bol', 'BolC4t24728H' => 'bol', 'BolC5t34517H' => 'bol', 'BolC7t45703H' => 'bol', 'BolC8t51166H' => 'bol', 'BolC9t53038H' => 'bol', 'BolC9t60000H' => 'bol', 'BraA01t01345Z' => 'bra', 'BraA01t01346Z' => 'bra', 'BraA01t01348Z' => 'bra', 'BraA03t12347Z' => 'bra', 'BraA03t12775Z' => 'bra', 'BraA03t14439Z' => 'bra', 'BraA04t15860Z' => 'bra', 'BraA05t19511Z' => 'bra', 'BraA05t22746Z' => 'bra', 'BraA09t35767Z' => 'bra', 'BraA09t40732Z' => 'bra', 'BraA10t45233Z' => 'bra', 'C03p38720' => 'bna', 'C03p43680' => 'bna', 'C04p06350' => 'bna', 'C04p31800' => 'bna', 'C05p58680' => 'bna', 'C07p52110' => 'bna', 'C08p35760' => 'bna', 'C09p01050' => 'bna', 'C09p72600' => 'bna', 'CAN.G106.2' => 'can', 'CAN.G1482.1' => 'can', 'CAN.G324.12' => 'can', 'CAN.G388.20' => 'can', 'CAN.G412.7' => 'can', 'CAN.G694.32' => 'can', 'CAN.G92.12' => 'can', 'CANSAT11G2353' => 'cansat', 'CANSAT21G1398' => 'cansat', 'CANSAT56G2456' => 'cansat', 'CANSAT56G3031' => 'cansat', 'CANSAT56G4539' => 'cansat', 'CARHR083680' => 'chi', 'CARHR171190' => 'chi', 'CARHR209010' => 'chi', 'CARHR229680' => 'chi', 'CARHR249490' => 'chi', 'Carub.0003s0844' => 'cru', 'Carub.0005s2755' => 'cru', 'Carub.0006s0322' => 'cru', 'Carub.0006s3586' => 'cru', 'Carub.0007s1855' => 'cru', 'Ca_07808_v3' => 'car', 'Ca_09535_v3' => 'car', 'Ca_10548_v3' => 'car', 'Ca_19913_v3' => 'car', 'Ca_19916_v3' => 'car', 'Ca_19975_v3' => 'car', 'CBR_g22876' => 'cbr', 'CBR_g22879' => 'cbr', 'CBR_g38491' => 'cbr', 'CBR_g54185' => 'cbr', 'CBR_g54190' => 'cbr', 'Cc02_g11020' => 'ccan', 'Cc02_g23920' => 'ccan', 'Cc02_g39860' => 'ccan', 'Cc02_g39870' => 'ccan', 'Cc03_g06760' => 'ccan', 'Cc06_g02450' => 'ccan', 'Cc09_g09450' => 'ccan', 'CDE02G1959' => 'cde', 'CDE04G0600' => 'cde', 'CDE07G1996' => 'cde', 'CDE07G2078' => 'cde', 'CDE11G0611' => 'cde', 'Cfa001683' => 'cfa', 'Cfa001734' => 'cfa', 'Cfa001737' => 'cfa', 'Cfa003751' => 'cfa', 'Cfa012019' => 'cfa', 'Cfa017353' => 'cfa', 'Cfa017732' => 'cfa', 'Cfa022464' => 'cfa', 'Ciclev10012400m.g' => 'ccl', 'Ciclev10021242m.g' => 'ccl', 'Ciclev10021302m.g' => 'ccl', 'Ciclev10021463m.g' => 'ccl', 'Ciclev10032359m.g' => 'ccl', 'CiPaw.01G081000' => 'cil', 'CiPaw.01G262500' => 'cil', 'CiPaw.01G269800' => 'cil', 'CiPaw.02G168400' => 'cil', 'CiPaw.05G119500' => 'cil', 'CiPaw.11G147300' => 'cil', 'ClCG01G003630' => 'cla', 'ClCG05G000510' => 'cla', 'ClCG05G002300' => 'cla', 'ClCG08G007650' => 'cla', 'ClCG10G021250' => 'cla', 'COL.COLO4_06218' => 'col', 'COL.COLO4_12538' => 'col', 'COL.COLO4_14775' => 'col', 'COL.COLO4_23875' => 'col', 'Cpa.g.sc141.16' => 'cpa', 'Cpa.g.sc169.16' => 'cpa', 'Cpa.g.sc244.4' => 'cpa', 'Cpa.g.sc244.5' => 'cpa', 'Cpa.g.sc29.87' => 'cpa', 'Cpa.g.sc53.115' => 'cpa', 'Cre03.g207502' => 'cre', 'Cre06.g277000' => 'cre', 'Cre09.g394050' => 'cre', 'CsaV3_3G007680' => 'csa', 'CsaV3_3G009710' => 'csa', 'CsaV3_3G034790' => 'csa', 'CsaV3_5G003750' => 'csa', 'CsaV3_6G036620' => 'csa', 'CSS0002288' => 'camsi', 'CSS0011250' => 'camsi', 'CSS0021619' => 'camsi', 'CSS0046701' => 'camsi', 'DCAR_006420' => 'dca', 'DCAR_006865' => 'dca', 'DCAR_008558' => 'dca', 'DCAR_028754' => 'dca', 'DCAR_028755' => 'dca', 'Dinv31218' => 'din', 'Dinv32371' => 'din', 'Dinv34250' => 'din', 'Dinv37156' => 'din', 'Dinv43704' => 'din', 'Duzib093G1811' => 'dzi', 'Duzib106G1622' => 'dzi', 'Duzib114G0504' => 'dzi', 'Duzib128G0338' => 'dzi', 'Duzib128G1577' => 'dzi', 'Duzib133G0104' => 'dzi', 'Duzib133G1080' => 'dzi', 'Duzib138G0324' => 'dzi', 'Duzib138G0394' => 'dzi', 'Duzib205G0122' => 'dzi', 'Duzib268G1020' => 'dzi', 'Duzib268G1359' => 'dzi', 'ECA232G3929' => 'eca', 'ECA236G2210' => 'eca', 'ECA236G2287' => 'eca', 'ECA240G4568' => 'eca', 'ECA247G0894' => 'eca', 'EL10Ac1g00200' => 'bvu', 'EL10Ac1g00886' => 'bvu', 'EL10As1g23091' => 'bvu', 'EL10As1g23092' => 'bvu', 'Eucgr.A01284' => 'egr', 'Eucgr.A01285' => 'egr', 'Eucgr.D02456' => 'egr', 'Eucgr.E00018' => 'egr', 'Eucgr.E01439' => 'egr', 'Eucgr.G02859' => 'egr', 'FAN01G0168' => 'fan', 'FAN01G0453' => 'fan', 'FAN01G2761' => 'fan', 'FAN02G1239' => 'fan', 'FAN03G0645' => 'fan', 'FAN03G2707' => 'fan', 'FAN03G2978' => 'fan', 'FAN04G0227' => 'fan', 'FAN06G0091' => 'fan', 'FAN06G1418' => 'fan', 'FAN06G1512' => 'fan', 'FAN06G1986' => 'fan', 'FAN06G2905' => 'fan', 'FAN06G4325' => 'fan', 'FAN08G0033' => 'fan', 'FAN09G0642' => 'fan', 'FAN10G1763' => 'fan', 'FAN10G2026' => 'fan', 'FAN10G2513' => 'fan', 'FAN10G3402' => 'fan', 'FAN10G3564' => 'fan', 'FAN10G3987' => 'fan', 'FAN13G1490' => 'fan', 'FAN14G5857' => 'fan', 'FAN18G1188' => 'fan', 'FvH4_5g00750' => 'fve', 'FvH4_6g13410' => 'fve', 'FvH4_7g11740' => 'fve', 'FvH4_7g17410' => 'fve', 'FvH4_7g18860' => 'fve', 'Glyma.01G099100' => 'gma', 'Glyma.01G142300' => 'gma', 'Glyma.03G025500' => 'gma', 'Glyma.03G069700' => 'gma', 'Glyma.03G260000' => 'gma', 'Glyma.09G269800' => 'gma', 'Glyma.10G208700' => 'gma', 'Glyma.18G220400' => 'gma', 'Glyma.20G182000' => 'gma', 'Gohir.A01G221726' => 'ghi', 'Gohir.A07G134600' => 'ghi', 'Gohir.A07G146000' => 'ghi', 'Gohir.A08G173900' => 'ghi', 'Gohir.A09G194900' => 'ghi', 'Gohir.A10G204100' => 'ghi', 'Gohir.A11G080600' => 'ghi', 'Gohir.A11G327500' => 'ghi', 'Gohir.A12G101800' => 'ghi', 'Gohir.D01G211200' => 'ghi', 'Gohir.D07G139200' => 'ghi', 'Gohir.D07G152100' => 'ghi', 'Gohir.D08G192600' => 'ghi', 'Gohir.D09G189200' => 'ghi', 'Gohir.D10G212000' => 'ghi', 'Gohir.D11G085200' => 'ghi', 'Gohir.D11G346400' => 'ghi', 'Gohir.D12G104800' => 'ghi', 'Gorai.001G151300' => 'gra', 'Gorai.001G174100' => 'gra', 'Gorai.002G257000' => 'gra', 'Gorai.004G202600' => 'gra', 'Gorai.007G090900' => 'gra', 'Gorai.007G376700' => 'gra', 'Gorai.008G114100' => 'gra', 'Gorai.011G237900' => 'gra', 'GSVIVG01005450001' => 'vvi', 'GSVIVG01016232001' => 'vvi', 'GSVIVG01026157001' => 'vvi', 'GSVIVG01027419001' => 'vvi', 'GSVIVG01027631001' => 'vvi', 'GSVIVG01034143001' => 'vvi', 'HanXRQChr03g0093921' => 'han', 'HanXRQChr04g0120001' => 'han', 'HanXRQChr04g0122561' => 'han', 'HanXRQChr09g0246851' => 'han', 'HanXRQChr10g0293311' => 'han', 'HanXRQChr13g0425231' => 'han', 'HanXRQChr16g0532571' => 'han', 'Haze_09050' => 'cav', 'Haze_15715' => 'cav', 'Haze_15716' => 'cav', 'Haze_16803' => 'cav', 'Haze_16850' => 'cav', 'Hma1.2p1_0301F.1_g118655' => 'hma', 'Hma1.2p1_0309F.1_g120590' => 'hma', 'Hma1.2p1_0936F.1_g238900' => 'hma', 'Hma1.2p1_3552F.1_g336740' => 'hma', 'HPP92_003520' => 'vpl', 'HPP92_006628' => 'vpl', 'HPP92_006645' => 'vpl', 'HPP92_014669' => 'vpl', 'HPP92_015077' => 'vpl', 'Hund16742' => 'sun', 'Hund17022' => 'sun', 'Lalb_Chr02g0152131' => 'lal', 'Lalb_Chr05g0225371' => 'lal', 'Lalb_Chr07g0189841' => 'lal', 'Lalb_Chr07g0192961' => 'lal', 'Lalb_Chr12g0208221' => 'lal', 'Lalb_Chr13g0291211' => 'lal', 'Lalb_Chr13g0291781' => 'lal', 'Lalb_Chr18g0044651' => 'lal', 'Lalb_Chr21g0313731' => 'lal', 'Lj1g0022533' => 'lja', 'Lj2A18T50' => 'lonja', 'Lj2A92G93' => 'lonja', 'Lj3A965T73' => 'lonja', 'Lj3g0000673' => 'lja', 'Lj3g0002666' => 'lja', 'Lj4g0016985' => 'lja', 'Lj5g0003625' => 'lja', 'Lj7A529G36' => 'lonja', 'Lj9A569T49' => 'lonja', 'Lj9A604T63' => 'lonja', 'Lsat_1_v5_gn_3_132060' => 'lsa', 'Lsat_1_v5_gn_4_68941' => 'lsa', 'Lsat_1_v5_gn_5_95580' => 'lsa', 'Lsat_1_v5_gn_7_161' => 'lsa', 'Lsat_1_v5_gn_7_7041' => 'lsa', 'Lsat_1_v5_gn_9_33481' => 'lsa', 'Lsat_1_v5_gn_9_68260' => 'lsa', 'Manes.01G073100' => 'mes', 'Manes.01G266300' => 'mes', 'Manes.02G033300' => 'mes', 'Manes.05G017900' => 'mes', 'Manes.05G046100' => 'mes', 'Manes.08G080900' => 'mes', 'Manes.10G049400' => 'mes', 'Mapoly0009s0186' => 'mpo', 'Mapoly0036s0118' => 'mpo', 'Mapoly0101s0046' => 'mpo', 'MBI04_g30218_MAGBIO' => 'mbi', 'MBI04_g35564_MAGBIO' => 'mbi', 'MBI12_g34011_MAGBIO' => 'mbi', 'MBI14_g04655_MAGBIO' => 'mbi', 'MCO07G653' => 'mco', 'MCO10G173' => 'mco', 'MD01G1087100' => 'mdo', 'MD01G1104200' => 'mdo', 'MD02G1205100' => 'mdo', 'MD04G1079200' => 'mdo', 'MD04G1131400' => 'mdo', 'MD07G1121600' => 'mdo', 'MD07G1157300' => 'mdo', 'MD07G1171000' => 'mdo', 'MD12G1144500' => 'mdo', 'Medtr1g094610' => 'mtr', 'Medtr4g021795' => 'mtr', 'Medtr4g023760' => 'mtr', 'Medtr7g118050' => 'mtr', 'MELO3C005582.2' => 'cme', 'MELO3C005989.2' => 'cme', 'MELO3C006192.2' => 'cme', 'MELO3C009248.2' => 'cme', 'MELO3C019817.2' => 'cme', 'Migut.B01625' => 'egut', 'Migut.B01915' => 'egut', 'Migut.F01721' => 'egut', 'Migut.J00314' => 'egut', 'MSTRG.20742' => 'ama', 'MSTRG.8134' => 'ama', 'Nitab4.5_0000096g0010' => 'nta', 'Nitab4.5_0000202g0030' => 'nta', 'Nitab4.5_0000216g0370' => 'nta', 'Nitab4.5_0000457g0230' => 'nta', 'Nitab4.5_0001702g0170' => 'nta', 'Nitab4.5_0003607g0010' => 'nta', 'Nitab4.5_0004917g0020' => 'nta', 'Nitab4.5_0007059g0010' => 'nta', 'Nitab4.5_0007184g0010' => 'nta', 'Nitab4.5_0007346g0020' => 'nta', 'Nn1g00410' => 'nnu', 'Nn1g01252' => 'nnu', 'Nn2g11168' => 'nnu', 'Nn2g13403' => 'nnu', 'Nn2g13760' => 'nnu', 'Nn4g26380' => 'nnu', 'Oeu000806.2' => 'oeu', 'Oeu005788.1' => 'oeu', 'Oeu006900.3' => 'oeu', 'Oeu007797.1' => 'oeu', 'Oeu011932.1' => 'oeu', 'Oeu022739.1' => 'oeu', 'Oeu037918.1' => 'oeu', 'Oeu055490.2' => 'oeu', 'Os01g0844400' => 'osa', 'Os02g0819100' => 'osa', 'Os03g0804300' => 'osa', 'Os05g0458000' => 'osa', 'Os07g0467800' => 'osa', 'Os12g0602200' => 'osa', 'Peaxi162Scf00013g03444' => 'pax', 'Peaxi162Scf00094g01120' => 'pax', 'Peaxi162Scf00191g01211' => 'pax', 'Peaxi162Scf00238g01110' => 'pax', 'Peaxi162Scf00330g00719' => 'pax', 'Peaxi162Scf00627g00018' => 'pax', 'PGR031G2686' => 'pgr', 'PGR042G0809' => 'pgr', 'PGR142G0193' => 'pgr', 'PGSC0003DMG400011066' => 'stu', 'PGSC0003DMG400012041' => 'stu', 'PGSC0003DMG400013678' => 'stu', 'PGSC0003DMG400023477' => 'stu', 'PGSC0003DMG400025956' => 'stu', 'PGSC0003DMG401019151' => 'stu', 'Phvul.006G116400' => 'pvu', 'Phvul.007G097300' => 'pvu', 'Phvul.010G015000' => 'pvu', 'Phvul.010G083900' => 'pvu', 'Potri.001G117100' => 'ptr', 'Potri.002G147300' => 'ptr', 'Potri.003G115600' => 'ptr', 'Potri.006G087400' => 'ptr', 'Potri.010G226100' => 'ptr', 'Potri.014G069200' => 'ptr', 'Potri.014G104000' => 'ptr', 'Potri.016G100200' => 'ptr', 'Pp3c10_20450' => 'ppa', 'Pp3c1_42400' => 'ppa', 'Pp3c3_24390' => 'ppa', 'Pp3c3_2860' => 'ppa', 'PRCOL_00003193' => 'pco', 'Prupe.2G144500' => 'ppe', 'Prupe.2G195700' => 'ppe', 'Prupe.2G209800' => 'ppe', 'Prupe.5G080000' => 'ppe', 'Prupe.6G257900' => 'ppe', 'Psat3g001160' => 'psa', 'Psat6g181880' => 'psa', 'Psat7g233720' => 'psa', 'PSO063G7587' => 'pso', 'PSO339G2145' => 'pso', 'PSO339G3369' => 'pso', 'PSO478G2747' => 'pso', 'PSO513G0140' => 'pso', 'PSO782G1614' => 'pso', 'PSO782G4889' => 'pso', 'PSO782G5485' => 'pso', 'PSO801G0241' => 'pso', 'QL07p048854' => 'qlo', 'QL08p046745' => 'qlo', 'QL08p052606' => 'qlo', 'QL08p053414' => 'qlo', 'QL08p054868' => 'qlo', 'RcHm_v2.0_Chr1g0350251' => 'rch', 'RcHm_v2.0_Chr1g0360851' => 'rch', 'RcHm_v2.0_Chr1g0362791' => 'rch', 'RcHm_v2.0_Chr3g0466281' => 'rch', 'RcHm_v2.0_Chr7g0201481' => 'rch', 'Rhsim01G0148600' => 'rsi', 'Rhsim05G0194400' => 'rsi', 'Rhsim07G0000700' => 'rsi', 'Rhsim07G0000800' => 'rsi', 'Rhsim07G0027900' => 'rsi', 'Rhsim09G0149500' => 'rsi', 'RhsimUnG0186900' => 'rsi', 'Sabra01G0089900' => 'sbr', 'Sabra02G0114700' => 'sbr', 'Sabra02G0116300' => 'sbr', 'Sabra03G0080100' => 'sbr', 'Sabra08G0024300' => 'sbr', 'Sabra10G0174300' => 'sbr', 'Sabra14G0048900' => 'sbr', 'Sabra14G0076500' => 'sbr', 'SalBow5G2513' => 'sbo', 'Sc01g0002300' => 'sci', 'Sc01g0004450' => 'sci', 'Sc06g0001680' => 'sci', 'Sc23g0003580' => 'sci', 'Sed0000913' => 'sed', 'Sed0001655' => 'sed', 'Sed0007745' => 'sed', 'Sed0010951' => 'sed', 'Sed0017599' => 'sed', 'Sed0021405' => 'sed', 'Sed0022810' => 'sed', 'SEGI_07099' => 'sgi', 'SEGI_11931' => 'sgi', 'SEGI_13187' => 'sgi', 'SEGI_29958' => 'sgi', 'SEGI_36351' => 'sgi', 'SGA_v2.0_scaffold126G33770' => 'sas', 'SGA_v2.0_scaffold153G37003' => 'sas', 'SGA_v2.0_scaffold2G01359' => 'sas', 'SGA_v2.0_scaffold5G03064' => 'sas', 'SGA_v2.0_scaffold95G28903' => 'sas', 'SHI12701' => 'shi', 'SHI26410' => 'shi', 'SHI38997' => 'shi', 'SHI53759' => 'shi', 'SHI53886' => 'shi', 'SHI54714' => 'shi', 'SMO011G0041' => 'smo', 'SMO146G0251' => 'smo', 'SMO160G0004' => 'smo', 'SMO174G0057' => 'smo', 'SMO244G0089' => 'smo', 'SMO296G0011' => 'smo', 'Solyc01g091280.3' => 'sly', 'Solyc05g047610.3' => 'sly', 'Solyc05g047640.3' => 'sly', 'Solyc05g055630.3' => 'sly', 'Solyc10g018160.2' => 'sly', 'Solyc10g084820.2' => 'sly', 'Solyc10g086565.2' => 'sly', 'Sopen01g037030' => 'spe', 'Sopen05g027920' => 'spe', 'Sopen05g034070' => 'spe', 'Sopen10g007260' => 'spe', 'Sopen10g034260' => 'spe', 'Sopen10g035950' => 'spe', 'Sp3g07710' => 'spa', 'Sp4g27420' => 'spa', 'Sp5g02450' => 'spa', 'Sp6g01280' => 'spa', 'Sp6g38480' => 'spa', 'Sp7g20780' => 'spa', 'TAR374G1413' => 'tar', 'TAR623G1777' => 'tar', 'TAR629G2370' => 'tar', 'TAR633G1759' => 'tar', 'TAR636G3387' => 'tar', 'THA.LOC104802447' => 'tha', 'THA.LOC104813916' => 'tha', 'THA.LOC104816423' => 'tha', 'THA.LOC104817246' => 'tha', 'THA.LOC104825895' => 'tha', 'Thecc.01G335200' => 'tca', 'Thecc.01G377400' => 'tca', 'Thecc.03G262200' => 'tca', 'Thecc.05G036800' => 'tca', 'Thecc.10G080500' => 'tca', 'Thecc.10G080800' => 'tca', 'Thhalv10001560m.g' => 'esa', 'Thhalv10006120m.g' => 'esa', 'Thhalv10014375m.g' => 'esa', 'Thhalv10021264m.g' => 'esa', 'Thhalv10028856m.g' => 'esa', 'TPR.G1914' => 'tpr', 'TPR.G4757' => 'tpr', 'TPR.G5595' => 'tpr', 'TWI14G0952' => 'twi', 'TWI14G1307' => 'twi', 'TWI38G2143' => 'twi', 'TWI59G0826' => 'twi', 'TWI77G0527' => 'twi', 'TWI81G0150' => 'twi', 'unitig_21.g21018' => 'ugi', 'unitig_26.g9725' => 'ugi', 'unitig_744.g24653' => 'ugi', 'unitig_749.g13778' => 'ugi', 'unitig_899.g15035' => 'ugi', 'vmacro04296' => 'vma', 'vmacro04852' => 'vma', 'vmacro13404' => 'vma', 'vmacro20169' => 'vma', 'vmacro21014' => 'vma', 'VMungo0331G0237' => 'vmu', 'VMungo0331G0706' => 'vmu', 'VMungo0331G1361' => 'vmu', 'VMungo0331G1489' => 'vmu', 'VMungo0540G1037' => 'vmu', 'VMungo0720G2487' => 'vmu', 'VMungo0720G2721' => 'vmu', 'Zm00001eb086860' => 'zma', 'Zm00001eb104760' => 'zma', 'Zm00001eb148220' => 'zma', 'Zm00001eb259030' => 'zma', 'Zm00001eb289590' => 'zma', 'Zm00001eb420150' => 'zma' ) $gf_id = 'HOM05D000968' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000968' ) $data_identifier = 'HOM05D000968' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 19, 'bol' => (int) 9, 'bra' => (int) 12, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 5, 'ccan' => (int) 7, 'cde' => (int) 5, 'cfa' => (int) 8, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 4, 'dca' => (int) 5, 'din' => (int) 5, 'dzi' => (int) 12, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 25, 'fve' => (int) 5, 'gma' => (int) 9, 'ghi' => (int) 18, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 7, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 5, 'sun' => (int) 2, 'lal' => (int) 9, 'lja' => (int) 5, 'lonja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 9, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 2, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 3, 'stu' => (int) 6, 'pvu' => (int) 4, 'ptr' => (int) 8, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 3, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 1, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 5, 'sas' => (int) 5, 'shi' => (int) 6, 'smo' => (int) 6, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 3, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420150' $species_info = array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ) $local_species = 'ama' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000968', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p31690' => 'bna', 'A03p36040' => 'bna', 'A03p53730' => 'bna', 'A04p01410' => 'bna', 'A05p05420' => 'bna', 'A05p39630' => 'bna', 'A05p39640' => 'bna', 'A09p00970' => 'bna', 'A09p53060' => 'bna', 'A10p31890' => 'bna', 'Aa31LG10G15040' => 'aar', 'Aa31LG1G21090' => 'aar', 'Aa31LG1G26900' => 'aar', 'Aa31LG3G1820' => 'aar', 'Aa31LG5G1100' => 'aar', 'Aa31LG6G4740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2265' => 'aag', 'Actinidia07998' => 'ach', 'Actinidia11266' => 'ach', 'Actinidia12682' => 'ach', 'Actinidia26479' => 'ach', 'Actinidia31406' => 'ach', 'Actinidia32437' => 'ach', 'Actinidia38862' => 'ach', 'Ah.05g174230' => 'amhyb', 'Ah.05g179070' => 'amhyb', 'Ah.05g179090' => 'amhyb', 'Ah.12g059950' => 'amhyb', 'AL3G20480' => 'aly', 'AL4G44520' => 'aly', 'AL5G43110' => 'aly', 'AL6G13890' => 'aly', 'AL6G52620' => 'aly', 'AL7G30830' => 'aly', 'Aqoxy1G00899' => 'aox', 'Aqoxy5G04333' => 'aox', 'Aqoxy7G00641' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3IZ0NN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4EF6AW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W9P8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79GA3M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C43NQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFCU6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G95YVJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCHK29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LU1UG8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX91RN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGB4B1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8DA0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9H7JI' => 'arhy', 'AT3G09320' => 'ath', 'AT3G60800' => 'ath', 'AT4G00840' => 'ath', 'AT4G22750' => 'ath', 'AT5G04270' => 'ath', 'ATR0090G003' => 'atr', 'ATR0559G349' => 'atr', 'ATR0680G261' => 'atr', 'ATR0810G048' => 'atr', 'Atru.chr12.831' => 'acertr', 'Atru.chr5.303' => 'acertr', 'Atru.chr5.748' => 'acertr', 'Atru.chr8.1999' => 'acertr', 'Atru.chr9.1436' => 'acertr', 'AUR62004211' => 'cqu', 'AUR62004548' => 'cqu', 'AUR62013637' => 'cqu', 'AUR62022662' => 'cqu', 'AUR62025777' => 'cqu', 'AUR62042386' => 'cqu', 'BcaB01g02310' => 'bca', 'BcaB01g06062' => 'bca', 'BcaB02g08975' => 'bca', 'BcaB02g08980' => 'bca', 'BcaC01g04228' => 'bca', 'BcaC01g06830' => 'bca', 'BcaC02g10186' => 'bca', 'BcaC02g12214' => 'bca', 'BcaC04g24101' => 'bca', 'BcaC05g29520' => 'bca', 'BcaC05g29661' => 'bca', 'BcaC06g32130' => 'bca', 'BcaC06g32131' => 'bca', 'BcaC07g40601' => 'bca', 'BcaC07g42641' => 'bca', 'BcaNung01038' => 'bca', 'BcaNung01676' => 'bca', 'BcaNung02480' => 'bca', 'BcaNung07376' => 'bca', 'BolC3t16146H' => 'bol', 'BolC3t16637H' => 'bol', 'BolC4t22257H' => 'bol', 'BolC4t24728H' => 'bol', 'BolC5t34517H' => 'bol', 'BolC7t45703H' => 'bol', 'BolC8t51166H' => 'bol', 'BolC9t53038H' => 'bol', 'BolC9t60000H' => 'bol', 'BraA01t01345Z' => 'bra', 'BraA01t01346Z' => 'bra', 'BraA01t01348Z' => 'bra', 'BraA03t12347Z' => 'bra', 'BraA03t12775Z' => 'bra', 'BraA03t14439Z' => 'bra', 'BraA04t15860Z' => 'bra', 'BraA05t19511Z' => 'bra', 'BraA05t22746Z' => 'bra', 'BraA09t35767Z' => 'bra', 'BraA09t40732Z' => 'bra', 'BraA10t45233Z' => 'bra', 'C03p38720' => 'bna', 'C03p43680' => 'bna', 'C04p06350' => 'bna', 'C04p31800' => 'bna', 'C05p58680' => 'bna', 'C07p52110' => 'bna', 'C08p35760' => 'bna', 'C09p01050' => 'bna', 'C09p72600' => 'bna', 'CAN.G106.2' => 'can', 'CAN.G1482.1' => 'can', 'CAN.G324.12' => 'can', 'CAN.G388.20' => 'can', 'CAN.G412.7' => 'can', 'CAN.G694.32' => 'can', 'CAN.G92.12' => 'can', 'CANSAT11G2353' => 'cansat', 'CANSAT21G1398' => 'cansat', 'CANSAT56G2456' => 'cansat', 'CANSAT56G3031' => 'cansat', 'CANSAT56G4539' => 'cansat', 'CARHR083680' => 'chi', 'CARHR171190' => 'chi', 'CARHR209010' => 'chi', 'CARHR229680' => 'chi', 'CARHR249490' => 'chi', 'Carub.0003s0844' => 'cru', 'Carub.0005s2755' => 'cru', 'Carub.0006s0322' => 'cru', 'Carub.0006s3586' => 'cru', 'Carub.0007s1855' => 'cru', 'Ca_07808_v3' => 'car', 'Ca_09535_v3' => 'car', 'Ca_10548_v3' => 'car', 'Ca_19913_v3' => 'car', 'Ca_19916_v3' => 'car', 'Ca_19975_v3' => 'car', 'CBR_g22876' => 'cbr', 'CBR_g22879' => 'cbr', 'CBR_g38491' => 'cbr', 'CBR_g54185' => 'cbr', 'CBR_g54190' => 'cbr', 'Cc02_g11020' => 'ccan', 'Cc02_g23920' => 'ccan', 'Cc02_g39860' => 'ccan', 'Cc02_g39870' => 'ccan', 'Cc03_g06760' => 'ccan', 'Cc06_g02450' => 'ccan', 'Cc09_g09450' => 'ccan', 'CDE02G1959' => 'cde', 'CDE04G0600' => 'cde', 'CDE07G1996' => 'cde', 'CDE07G2078' => 'cde', 'CDE11G0611' => 'cde', 'Cfa001683' => 'cfa', 'Cfa001734' => 'cfa', 'Cfa001737' => 'cfa', 'Cfa003751' => 'cfa', 'Cfa012019' => 'cfa', 'Cfa017353' => 'cfa', 'Cfa017732' => 'cfa', 'Cfa022464' => 'cfa', 'Ciclev10012400m.g' => 'ccl', 'Ciclev10021242m.g' => 'ccl', 'Ciclev10021302m.g' => 'ccl', 'Ciclev10021463m.g' => 'ccl', 'Ciclev10032359m.g' => 'ccl', 'CiPaw.01G081000' => 'cil', 'CiPaw.01G262500' => 'cil', 'CiPaw.01G269800' => 'cil', 'CiPaw.02G168400' => 'cil', 'CiPaw.05G119500' => 'cil', 'CiPaw.11G147300' => 'cil', 'ClCG01G003630' => 'cla', 'ClCG05G000510' => 'cla', 'ClCG05G002300' => 'cla', 'ClCG08G007650' => 'cla', 'ClCG10G021250' => 'cla', 'COL.COLO4_06218' => 'col', 'COL.COLO4_12538' => 'col', 'COL.COLO4_14775' => 'col', 'COL.COLO4_23875' => 'col', 'Cpa.g.sc141.16' => 'cpa', 'Cpa.g.sc169.16' => 'cpa', 'Cpa.g.sc244.4' => 'cpa', 'Cpa.g.sc244.5' => 'cpa', 'Cpa.g.sc29.87' => 'cpa', 'Cpa.g.sc53.115' => 'cpa', 'Cre03.g207502' => 'cre', 'Cre06.g277000' => 'cre', 'Cre09.g394050' => 'cre', 'CsaV3_3G007680' => 'csa', 'CsaV3_3G009710' => 'csa', 'CsaV3_3G034790' => 'csa', 'CsaV3_5G003750' => 'csa', 'CsaV3_6G036620' => 'csa', 'CSS0002288' => 'camsi', 'CSS0011250' => 'camsi', 'CSS0021619' => 'camsi', 'CSS0046701' => 'camsi', 'DCAR_006420' => 'dca', 'DCAR_006865' => 'dca', 'DCAR_008558' => 'dca', 'DCAR_028754' => 'dca', 'DCAR_028755' => 'dca', 'Dinv31218' => 'din', 'Dinv32371' => 'din', 'Dinv34250' => 'din', 'Dinv37156' => 'din', 'Dinv43704' => 'din', 'Duzib093G1811' => 'dzi', 'Duzib106G1622' => 'dzi', 'Duzib114G0504' => 'dzi', 'Duzib128G0338' => 'dzi', 'Duzib128G1577' => 'dzi', 'Duzib133G0104' => 'dzi', 'Duzib133G1080' => 'dzi', 'Duzib138G0324' => 'dzi', 'Duzib138G0394' => 'dzi', 'Duzib205G0122' => 'dzi', 'Duzib268G1020' => 'dzi', 'Duzib268G1359' => 'dzi', 'ECA232G3929' => 'eca', 'ECA236G2210' => 'eca', 'ECA236G2287' => 'eca', 'ECA240G4568' => 'eca', 'ECA247G0894' => 'eca', 'EL10Ac1g00200' => 'bvu', 'EL10Ac1g00886' => 'bvu', 'EL10As1g23091' => 'bvu', 'EL10As1g23092' => 'bvu', 'Eucgr.A01284' => 'egr', 'Eucgr.A01285' => 'egr', 'Eucgr.D02456' => 'egr', 'Eucgr.E00018' => 'egr', 'Eucgr.E01439' => 'egr', 'Eucgr.G02859' => 'egr', 'FAN01G0168' => 'fan', 'FAN01G0453' => 'fan', 'FAN01G2761' => 'fan', 'FAN02G1239' => 'fan', 'FAN03G0645' => 'fan', 'FAN03G2707' => 'fan', 'FAN03G2978' => 'fan', 'FAN04G0227' => 'fan', 'FAN06G0091' => 'fan', 'FAN06G1418' => 'fan', 'FAN06G1512' => 'fan', 'FAN06G1986' => 'fan', 'FAN06G2905' => 'fan', 'FAN06G4325' => 'fan', 'FAN08G0033' => 'fan', 'FAN09G0642' => 'fan', 'FAN10G1763' => 'fan', 'FAN10G2026' => 'fan', 'FAN10G2513' => 'fan', 'FAN10G3402' => 'fan', 'FAN10G3564' => 'fan', 'FAN10G3987' => 'fan', 'FAN13G1490' => 'fan', 'FAN14G5857' => 'fan', 'FAN18G1188' => 'fan', 'FvH4_5g00750' => 'fve', 'FvH4_6g13410' => 'fve', 'FvH4_7g11740' => 'fve', 'FvH4_7g17410' => 'fve', 'FvH4_7g18860' => 'fve', 'Glyma.01G099100' => 'gma', 'Glyma.01G142300' => 'gma', 'Glyma.03G025500' => 'gma', 'Glyma.03G069700' => 'gma', 'Glyma.03G260000' => 'gma', 'Glyma.09G269800' => 'gma', 'Glyma.10G208700' => 'gma', 'Glyma.18G220400' => 'gma', 'Glyma.20G182000' => 'gma', 'Gohir.A01G221726' => 'ghi', 'Gohir.A07G134600' => 'ghi', 'Gohir.A07G146000' => 'ghi', 'Gohir.A08G173900' => 'ghi', 'Gohir.A09G194900' => 'ghi', 'Gohir.A10G204100' => 'ghi', 'Gohir.A11G080600' => 'ghi', 'Gohir.A11G327500' => 'ghi', 'Gohir.A12G101800' => 'ghi', 'Gohir.D01G211200' => 'ghi', 'Gohir.D07G139200' => 'ghi', 'Gohir.D07G152100' => 'ghi', 'Gohir.D08G192600' => 'ghi', 'Gohir.D09G189200' => 'ghi', 'Gohir.D10G212000' => 'ghi', 'Gohir.D11G085200' => 'ghi', 'Gohir.D11G346400' => 'ghi', 'Gohir.D12G104800' => 'ghi', 'Gorai.001G151300' => 'gra', 'Gorai.001G174100' => 'gra', 'Gorai.002G257000' => 'gra', 'Gorai.004G202600' => 'gra', 'Gorai.007G090900' => 'gra', 'Gorai.007G376700' => 'gra', 'Gorai.008G114100' => 'gra', 'Gorai.011G237900' => 'gra', 'GSVIVG01005450001' => 'vvi', 'GSVIVG01016232001' => 'vvi', 'GSVIVG01026157001' => 'vvi', 'GSVIVG01027419001' => 'vvi', 'GSVIVG01027631001' => 'vvi', 'GSVIVG01034143001' => 'vvi', 'HanXRQChr03g0093921' => 'han', 'HanXRQChr04g0120001' => 'han', 'HanXRQChr04g0122561' => 'han', 'HanXRQChr09g0246851' => 'han', 'HanXRQChr10g0293311' => 'han', 'HanXRQChr13g0425231' => 'han', 'HanXRQChr16g0532571' => 'han', 'Haze_09050' => 'cav', 'Haze_15715' => 'cav', 'Haze_15716' => 'cav', 'Haze_16803' => 'cav', 'Haze_16850' => 'cav', 'Hma1.2p1_0301F.1_g118655' => 'hma', 'Hma1.2p1_0309F.1_g120590' => 'hma', 'Hma1.2p1_0936F.1_g238900' => 'hma', 'Hma1.2p1_3552F.1_g336740' => 'hma', 'HPP92_003520' => 'vpl', 'HPP92_006628' => 'vpl', 'HPP92_006645' => 'vpl', 'HPP92_014669' => 'vpl', 'HPP92_015077' => 'vpl', 'Hund16742' => 'sun', 'Hund17022' => 'sun', 'Lalb_Chr02g0152131' => 'lal', 'Lalb_Chr05g0225371' => 'lal', 'Lalb_Chr07g0189841' => 'lal', 'Lalb_Chr07g0192961' => 'lal', 'Lalb_Chr12g0208221' => 'lal', 'Lalb_Chr13g0291211' => 'lal', 'Lalb_Chr13g0291781' => 'lal', 'Lalb_Chr18g0044651' => 'lal', 'Lalb_Chr21g0313731' => 'lal', 'Lj1g0022533' => 'lja', 'Lj2A18T50' => 'lonja', 'Lj2A92G93' => 'lonja', 'Lj3A965T73' => 'lonja', 'Lj3g0000673' => 'lja', 'Lj3g0002666' => 'lja', 'Lj4g0016985' => 'lja', 'Lj5g0003625' => 'lja', 'Lj7A529G36' => 'lonja', 'Lj9A569T49' => 'lonja', 'Lj9A604T63' => 'lonja', 'Lsat_1_v5_gn_3_132060' => 'lsa', 'Lsat_1_v5_gn_4_68941' => 'lsa', 'Lsat_1_v5_gn_5_95580' => 'lsa', 'Lsat_1_v5_gn_7_161' => 'lsa', 'Lsat_1_v5_gn_7_7041' => 'lsa', 'Lsat_1_v5_gn_9_33481' => 'lsa', 'Lsat_1_v5_gn_9_68260' => 'lsa', 'Manes.01G073100' => 'mes', 'Manes.01G266300' => 'mes', 'Manes.02G033300' => 'mes', 'Manes.05G017900' => 'mes', 'Manes.05G046100' => 'mes', 'Manes.08G080900' => 'mes', 'Manes.10G049400' => 'mes', 'Mapoly0009s0186' => 'mpo', 'Mapoly0036s0118' => 'mpo', 'Mapoly0101s0046' => 'mpo', 'MBI04_g30218_MAGBIO' => 'mbi', 'MBI04_g35564_MAGBIO' => 'mbi', 'MBI12_g34011_MAGBIO' => 'mbi', 'MBI14_g04655_MAGBIO' => 'mbi', 'MCO07G653' => 'mco', 'MCO10G173' => 'mco', 'MD01G1087100' => 'mdo', 'MD01G1104200' => 'mdo', 'MD02G1205100' => 'mdo', 'MD04G1079200' => 'mdo', 'MD04G1131400' => 'mdo', 'MD07G1121600' => 'mdo', 'MD07G1157300' => 'mdo', 'MD07G1171000' => 'mdo', 'MD12G1144500' => 'mdo', 'Medtr1g094610' => 'mtr', 'Medtr4g021795' => 'mtr', 'Medtr4g023760' => 'mtr', 'Medtr7g118050' => 'mtr', 'MELO3C005582.2' => 'cme', 'MELO3C005989.2' => 'cme', 'MELO3C006192.2' => 'cme', 'MELO3C009248.2' => 'cme', 'MELO3C019817.2' => 'cme', 'Migut.B01625' => 'egut', 'Migut.B01915' => 'egut', 'Migut.F01721' => 'egut', 'Migut.J00314' => 'egut', 'MSTRG.20742' => 'ama', 'MSTRG.8134' => 'ama', 'Nitab4.5_0000096g0010' => 'nta', 'Nitab4.5_0000202g0030' => 'nta', 'Nitab4.5_0000216g0370' => 'nta', 'Nitab4.5_0000457g0230' => 'nta', 'Nitab4.5_0001702g0170' => 'nta', 'Nitab4.5_0003607g0010' => 'nta', 'Nitab4.5_0004917g0020' => 'nta', 'Nitab4.5_0007059g0010' => 'nta', 'Nitab4.5_0007184g0010' => 'nta', 'Nitab4.5_0007346g0020' => 'nta', 'Nn1g00410' => 'nnu', 'Nn1g01252' => 'nnu', 'Nn2g11168' => 'nnu', 'Nn2g13403' => 'nnu', 'Nn2g13760' => 'nnu', 'Nn4g26380' => 'nnu', 'Oeu000806.2' => 'oeu', 'Oeu005788.1' => 'oeu', 'Oeu006900.3' => 'oeu', 'Oeu007797.1' => 'oeu', 'Oeu011932.1' => 'oeu', 'Oeu022739.1' => 'oeu', 'Oeu037918.1' => 'oeu', 'Oeu055490.2' => 'oeu', 'Os01g0844400' => 'osa', 'Os02g0819100' => 'osa', 'Os03g0804300' => 'osa', 'Os05g0458000' => 'osa', 'Os07g0467800' => 'osa', 'Os12g0602200' => 'osa', 'Peaxi162Scf00013g03444' => 'pax', 'Peaxi162Scf00094g01120' => 'pax', 'Peaxi162Scf00191g01211' => 'pax', 'Peaxi162Scf00238g01110' => 'pax', 'Peaxi162Scf00330g00719' => 'pax', 'Peaxi162Scf00627g00018' => 'pax', 'PGR031G2686' => 'pgr', 'PGR042G0809' => 'pgr', 'PGR142G0193' => 'pgr', 'PGSC0003DMG400011066' => 'stu', 'PGSC0003DMG400012041' => 'stu', 'PGSC0003DMG400013678' => 'stu', 'PGSC0003DMG400023477' => 'stu', 'PGSC0003DMG400025956' => 'stu', 'PGSC0003DMG401019151' => 'stu', 'Phvul.006G116400' => 'pvu', 'Phvul.007G097300' => 'pvu', 'Phvul.010G015000' => 'pvu', 'Phvul.010G083900' => 'pvu', 'Potri.001G117100' => 'ptr', 'Potri.002G147300' => 'ptr', 'Potri.003G115600' => 'ptr', 'Potri.006G087400' => 'ptr', 'Potri.010G226100' => 'ptr', 'Potri.014G069200' => 'ptr', 'Potri.014G104000' => 'ptr', 'Potri.016G100200' => 'ptr', 'Pp3c10_20450' => 'ppa', 'Pp3c1_42400' => 'ppa', 'Pp3c3_24390' => 'ppa', 'Pp3c3_2860' => 'ppa', 'PRCOL_00003193' => 'pco', 'Prupe.2G144500' => 'ppe', 'Prupe.2G195700' => 'ppe', 'Prupe.2G209800' => 'ppe', 'Prupe.5G080000' => 'ppe', 'Prupe.6G257900' => 'ppe', 'Psat3g001160' => 'psa', 'Psat6g181880' => 'psa', 'Psat7g233720' => 'psa', 'PSO063G7587' => 'pso', 'PSO339G2145' => 'pso', 'PSO339G3369' => 'pso', 'PSO478G2747' => 'pso', 'PSO513G0140' => 'pso', 'PSO782G1614' => 'pso', 'PSO782G4889' => 'pso', 'PSO782G5485' => 'pso', 'PSO801G0241' => 'pso', 'QL07p048854' => 'qlo', 'QL08p046745' => 'qlo', 'QL08p052606' => 'qlo', 'QL08p053414' => 'qlo', 'QL08p054868' => 'qlo', 'RcHm_v2.0_Chr1g0350251' => 'rch', 'RcHm_v2.0_Chr1g0360851' => 'rch', 'RcHm_v2.0_Chr1g0362791' => 'rch', 'RcHm_v2.0_Chr3g0466281' => 'rch', 'RcHm_v2.0_Chr7g0201481' => 'rch', 'Rhsim01G0148600' => 'rsi', 'Rhsim05G0194400' => 'rsi', 'Rhsim07G0000700' => 'rsi', 'Rhsim07G0000800' => 'rsi', 'Rhsim07G0027900' => 'rsi', 'Rhsim09G0149500' => 'rsi', 'RhsimUnG0186900' => 'rsi', 'Sabra01G0089900' => 'sbr', 'Sabra02G0114700' => 'sbr', 'Sabra02G0116300' => 'sbr', 'Sabra03G0080100' => 'sbr', 'Sabra08G0024300' => 'sbr', 'Sabra10G0174300' => 'sbr', 'Sabra14G0048900' => 'sbr', 'Sabra14G0076500' => 'sbr', 'SalBow5G2513' => 'sbo', 'Sc01g0002300' => 'sci', 'Sc01g0004450' => 'sci', 'Sc06g0001680' => 'sci', 'Sc23g0003580' => 'sci', 'Sed0000913' => 'sed', 'Sed0001655' => 'sed', 'Sed0007745' => 'sed', 'Sed0010951' => 'sed', 'Sed0017599' => 'sed', 'Sed0021405' => 'sed', 'Sed0022810' => 'sed', 'SEGI_07099' => 'sgi', 'SEGI_11931' => 'sgi', 'SEGI_13187' => 'sgi', 'SEGI_29958' => 'sgi', 'SEGI_36351' => 'sgi', 'SGA_v2.0_scaffold126G33770' => 'sas', 'SGA_v2.0_scaffold153G37003' => 'sas', 'SGA_v2.0_scaffold2G01359' => 'sas', 'SGA_v2.0_scaffold5G03064' => 'sas', 'SGA_v2.0_scaffold95G28903' => 'sas', 'SHI12701' => 'shi', 'SHI26410' => 'shi', 'SHI38997' => 'shi', 'SHI53759' => 'shi', 'SHI53886' => 'shi', 'SHI54714' => 'shi', 'SMO011G0041' => 'smo', 'SMO146G0251' => 'smo', 'SMO160G0004' => 'smo', 'SMO174G0057' => 'smo', 'SMO244G0089' => 'smo', 'SMO296G0011' => 'smo', 'Solyc01g091280.3' => 'sly', 'Solyc05g047610.3' => 'sly', 'Solyc05g047640.3' => 'sly', 'Solyc05g055630.3' => 'sly', 'Solyc10g018160.2' => 'sly', 'Solyc10g084820.2' => 'sly', 'Solyc10g086565.2' => 'sly', 'Sopen01g037030' => 'spe', 'Sopen05g027920' => 'spe', 'Sopen05g034070' => 'spe', 'Sopen10g007260' => 'spe', 'Sopen10g034260' => 'spe', 'Sopen10g035950' => 'spe', 'Sp3g07710' => 'spa', 'Sp4g27420' => 'spa', 'Sp5g02450' => 'spa', 'Sp6g01280' => 'spa', 'Sp6g38480' => 'spa', 'Sp7g20780' => 'spa', 'TAR374G1413' => 'tar', 'TAR623G1777' => 'tar', 'TAR629G2370' => 'tar', 'TAR633G1759' => 'tar', 'TAR636G3387' => 'tar', 'THA.LOC104802447' => 'tha', 'THA.LOC104813916' => 'tha', 'THA.LOC104816423' => 'tha', 'THA.LOC104817246' => 'tha', 'THA.LOC104825895' => 'tha', 'Thecc.01G335200' => 'tca', 'Thecc.01G377400' => 'tca', 'Thecc.03G262200' => 'tca', 'Thecc.05G036800' => 'tca', 'Thecc.10G080500' => 'tca', 'Thecc.10G080800' => 'tca', 'Thhalv10001560m.g' => 'esa', 'Thhalv10006120m.g' => 'esa', 'Thhalv10014375m.g' => 'esa', 'Thhalv10021264m.g' => 'esa', 'Thhalv10028856m.g' => 'esa', 'TPR.G1914' => 'tpr', 'TPR.G4757' => 'tpr', 'TPR.G5595' => 'tpr', 'TWI14G0952' => 'twi', 'TWI14G1307' => 'twi', 'TWI38G2143' => 'twi', 'TWI59G0826' => 'twi', 'TWI77G0527' => 'twi', 'TWI81G0150' => 'twi', 'unitig_21.g21018' => 'ugi', 'unitig_26.g9725' => 'ugi', 'unitig_744.g24653' => 'ugi', 'unitig_749.g13778' => 'ugi', 'unitig_899.g15035' => 'ugi', 'vmacro04296' => 'vma', 'vmacro04852' => 'vma', 'vmacro13404' => 'vma', 'vmacro20169' => 'vma', 'vmacro21014' => 'vma', 'VMungo0331G0237' => 'vmu', 'VMungo0331G0706' => 'vmu', 'VMungo0331G1361' => 'vmu', 'VMungo0331G1489' => 'vmu', 'VMungo0540G1037' => 'vmu', 'VMungo0720G2487' => 'vmu', 'VMungo0720G2721' => 'vmu', 'Zm00001eb086860' => 'zma', 'Zm00001eb104760' => 'zma', 'Zm00001eb148220' => 'zma', 'Zm00001eb259030' => 'zma', 'Zm00001eb289590' => 'zma', 'Zm00001eb420150' => 'zma' ), 'gf_id' => 'HOM05D000968', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000968' ), 'data_identifier' => 'HOM05D000968', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000968', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p31690' => 'bna', 'A03p36040' => 'bna', 'A03p53730' => 'bna', 'A04p01410' => 'bna', 'A05p05420' => 'bna', 'A05p39630' => 'bna', 'A05p39640' => 'bna', 'A09p00970' => 'bna', 'A09p53060' => 'bna', 'A10p31890' => 'bna', 'Aa31LG10G15040' => 'aar', 'Aa31LG1G21090' => 'aar', 'Aa31LG1G26900' => 'aar', 'Aa31LG3G1820' => 'aar', 'Aa31LG5G1100' => 'aar', 'Aa31LG6G4740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2265' => 'aag', 'Actinidia07998' => 'ach', 'Actinidia11266' => 'ach', 'Actinidia12682' => 'ach', 'Actinidia26479' => 'ach', 'Actinidia31406' => 'ach', 'Actinidia32437' => 'ach', 'Actinidia38862' => 'ach', 'Ah.05g174230' => 'amhyb', 'Ah.05g179070' => 'amhyb', 'Ah.05g179090' => 'amhyb', 'Ah.12g059950' => 'amhyb', 'AL3G20480' => 'aly', 'AL4G44520' => 'aly', 'AL5G43110' => 'aly', 'AL6G13890' => 'aly', 'AL6G52620' => 'aly', 'AL7G30830' => 'aly', 'Aqoxy1G00899' => 'aox', 'Aqoxy5G04333' => 'aox', 'Aqoxy7G00641' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3IZ0NN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4EF6AW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W9P8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79GA3M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C43NQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFCU6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G95YVJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCHK29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LU1UG8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX91RN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGB4B1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8DA0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9H7JI' => 'arhy', 'AT3G09320' => 'ath', 'AT3G60800' => 'ath', 'AT4G00840' => 'ath', 'AT4G22750' => 'ath', 'AT5G04270' => 'ath', 'ATR0090G003' => 'atr', 'ATR0559G349' => 'atr', 'ATR0680G261' => 'atr', 'ATR0810G048' => 'atr', 'Atru.chr12.831' => 'acertr', 'Atru.chr5.303' => 'acertr', 'Atru.chr5.748' => 'acertr', 'Atru.chr8.1999' => 'acertr', 'Atru.chr9.1436' => 'acertr', 'AUR62004211' => 'cqu', 'AUR62004548' => 'cqu', 'AUR62013637' => 'cqu', 'AUR62022662' => 'cqu', 'AUR62025777' => 'cqu', 'AUR62042386' => 'cqu', 'BcaB01g02310' => 'bca', 'BcaB01g06062' => 'bca', 'BcaB02g08975' => 'bca', 'BcaB02g08980' => 'bca', 'BcaC01g04228' => 'bca', 'BcaC01g06830' => 'bca', 'BcaC02g10186' => 'bca', 'BcaC02g12214' => 'bca', 'BcaC04g24101' => 'bca', 'BcaC05g29520' => 'bca', 'BcaC05g29661' => 'bca', 'BcaC06g32130' => 'bca', 'BcaC06g32131' => 'bca', 'BcaC07g40601' => 'bca', 'BcaC07g42641' => 'bca', 'BcaNung01038' => 'bca', 'BcaNung01676' => 'bca', 'BcaNung02480' => 'bca', 'BcaNung07376' => 'bca', 'BolC3t16146H' => 'bol', 'BolC3t16637H' => 'bol', 'BolC4t22257H' => 'bol', 'BolC4t24728H' => 'bol', 'BolC5t34517H' => 'bol', 'BolC7t45703H' => 'bol', 'BolC8t51166H' => 'bol', 'BolC9t53038H' => 'bol', 'BolC9t60000H' => 'bol', 'BraA01t01345Z' => 'bra', 'BraA01t01346Z' => 'bra', 'BraA01t01348Z' => 'bra', 'BraA03t12347Z' => 'bra', 'BraA03t12775Z' => 'bra', 'BraA03t14439Z' => 'bra', 'BraA04t15860Z' => 'bra', 'BraA05t19511Z' => 'bra', 'BraA05t22746Z' => 'bra', 'BraA09t35767Z' => 'bra', 'BraA09t40732Z' => 'bra', 'BraA10t45233Z' => 'bra', 'C03p38720' => 'bna', 'C03p43680' => 'bna', 'C04p06350' => 'bna', 'C04p31800' => 'bna', 'C05p58680' => 'bna', 'C07p52110' => 'bna', 'C08p35760' => 'bna', 'C09p01050' => 'bna', 'C09p72600' => 'bna', 'CAN.G106.2' => 'can', 'CAN.G1482.1' => 'can', 'CAN.G324.12' => 'can', 'CAN.G388.20' => 'can', 'CAN.G412.7' => 'can', 'CAN.G694.32' => 'can', 'CAN.G92.12' => 'can', 'CANSAT11G2353' => 'cansat', 'CANSAT21G1398' => 'cansat', 'CANSAT56G2456' => 'cansat', 'CANSAT56G3031' => 'cansat', 'CANSAT56G4539' => 'cansat', 'CARHR083680' => 'chi', 'CARHR171190' => 'chi', 'CARHR209010' => 'chi', 'CARHR229680' => 'chi', 'CARHR249490' => 'chi', 'Carub.0003s0844' => 'cru', 'Carub.0005s2755' => 'cru', 'Carub.0006s0322' => 'cru', 'Carub.0006s3586' => 'cru', 'Carub.0007s1855' => 'cru', 'Ca_07808_v3' => 'car', 'Ca_09535_v3' => 'car', 'Ca_10548_v3' => 'car', 'Ca_19913_v3' => 'car', 'Ca_19916_v3' => 'car', 'Ca_19975_v3' => 'car', 'CBR_g22876' => 'cbr', 'CBR_g22879' => 'cbr', 'CBR_g38491' => 'cbr', 'CBR_g54185' => 'cbr', 'CBR_g54190' => 'cbr', 'Cc02_g11020' => 'ccan', 'Cc02_g23920' => 'ccan', 'Cc02_g39860' => 'ccan', 'Cc02_g39870' => 'ccan', 'Cc03_g06760' => 'ccan', 'Cc06_g02450' => 'ccan', 'Cc09_g09450' => 'ccan', 'CDE02G1959' => 'cde', 'CDE04G0600' => 'cde', 'CDE07G1996' => 'cde', 'CDE07G2078' => 'cde', 'CDE11G0611' => 'cde', 'Cfa001683' => 'cfa', 'Cfa001734' => 'cfa', 'Cfa001737' => 'cfa', 'Cfa003751' => 'cfa', 'Cfa012019' => 'cfa', 'Cfa017353' => 'cfa', 'Cfa017732' => 'cfa', 'Cfa022464' => 'cfa', 'Ciclev10012400m.g' => 'ccl', 'Ciclev10021242m.g' => 'ccl', 'Ciclev10021302m.g' => 'ccl', 'Ciclev10021463m.g' => 'ccl', 'Ciclev10032359m.g' => 'ccl', 'CiPaw.01G081000' => 'cil', 'CiPaw.01G262500' => 'cil', 'CiPaw.01G269800' => 'cil', 'CiPaw.02G168400' => 'cil', 'CiPaw.05G119500' => 'cil', 'CiPaw.11G147300' => 'cil', 'ClCG01G003630' => 'cla', 'ClCG05G000510' => 'cla', 'ClCG05G002300' => 'cla', 'ClCG08G007650' => 'cla', 'ClCG10G021250' => 'cla', 'COL.COLO4_06218' => 'col', 'COL.COLO4_12538' => 'col', 'COL.COLO4_14775' => 'col', 'COL.COLO4_23875' => 'col', 'Cpa.g.sc141.16' => 'cpa', 'Cpa.g.sc169.16' => 'cpa', 'Cpa.g.sc244.4' => 'cpa', 'Cpa.g.sc244.5' => 'cpa', 'Cpa.g.sc29.87' => 'cpa', 'Cpa.g.sc53.115' => 'cpa', 'Cre03.g207502' => 'cre', 'Cre06.g277000' => 'cre', 'Cre09.g394050' => 'cre', 'CsaV3_3G007680' => 'csa', 'CsaV3_3G009710' => 'csa', 'CsaV3_3G034790' => 'csa', 'CsaV3_5G003750' => 'csa', 'CsaV3_6G036620' => 'csa', 'CSS0002288' => 'camsi', 'CSS0011250' => 'camsi', 'CSS0021619' => 'camsi', 'CSS0046701' => 'camsi', 'DCAR_006420' => 'dca', 'DCAR_006865' => 'dca', 'DCAR_008558' => 'dca', 'DCAR_028754' => 'dca', 'DCAR_028755' => 'dca', 'Dinv31218' => 'din', 'Dinv32371' => 'din', 'Dinv34250' => 'din', 'Dinv37156' => 'din', 'Dinv43704' => 'din', 'Duzib093G1811' => 'dzi', 'Duzib106G1622' => 'dzi', 'Duzib114G0504' => 'dzi', 'Duzib128G0338' => 'dzi', 'Duzib128G1577' => 'dzi', 'Duzib133G0104' => 'dzi', 'Duzib133G1080' => 'dzi', 'Duzib138G0324' => 'dzi', 'Duzib138G0394' => 'dzi', 'Duzib205G0122' => 'dzi', 'Duzib268G1020' => 'dzi', 'Duzib268G1359' => 'dzi', 'ECA232G3929' => 'eca', 'ECA236G2210' => 'eca', 'ECA236G2287' => 'eca', 'ECA240G4568' => 'eca', 'ECA247G0894' => 'eca', 'EL10Ac1g00200' => 'bvu', 'EL10Ac1g00886' => 'bvu', 'EL10As1g23091' => 'bvu', 'EL10As1g23092' => 'bvu', 'Eucgr.A01284' => 'egr', 'Eucgr.A01285' => 'egr', 'Eucgr.D02456' => 'egr', 'Eucgr.E00018' => 'egr', 'Eucgr.E01439' => 'egr', 'Eucgr.G02859' => 'egr', 'FAN01G0168' => 'fan', 'FAN01G0453' => 'fan', 'FAN01G2761' => 'fan', 'FAN02G1239' => 'fan', 'FAN03G0645' => 'fan', 'FAN03G2707' => 'fan', 'FAN03G2978' => 'fan', 'FAN04G0227' => 'fan', 'FAN06G0091' => 'fan', 'FAN06G1418' => 'fan', 'FAN06G1512' => 'fan', 'FAN06G1986' => 'fan', 'FAN06G2905' => 'fan', 'FAN06G4325' => 'fan', 'FAN08G0033' => 'fan', 'FAN09G0642' => 'fan', 'FAN10G1763' => 'fan', 'FAN10G2026' => 'fan', 'FAN10G2513' => 'fan', 'FAN10G3402' => 'fan', 'FAN10G3564' => 'fan', 'FAN10G3987' => 'fan', 'FAN13G1490' => 'fan', 'FAN14G5857' => 'fan', 'FAN18G1188' => 'fan', 'FvH4_5g00750' => 'fve', 'FvH4_6g13410' => 'fve', 'FvH4_7g11740' => 'fve', 'FvH4_7g17410' => 'fve', 'FvH4_7g18860' => 'fve', 'Glyma.01G099100' => 'gma', 'Glyma.01G142300' => 'gma', 'Glyma.03G025500' => 'gma', 'Glyma.03G069700' => 'gma', 'Glyma.03G260000' => 'gma', 'Glyma.09G269800' => 'gma', 'Glyma.10G208700' => 'gma', 'Glyma.18G220400' => 'gma', 'Glyma.20G182000' => 'gma', 'Gohir.A01G221726' => 'ghi', 'Gohir.A07G134600' => 'ghi', 'Gohir.A07G146000' => 'ghi', 'Gohir.A08G173900' => 'ghi', 'Gohir.A09G194900' => 'ghi', 'Gohir.A10G204100' => 'ghi', 'Gohir.A11G080600' => 'ghi', 'Gohir.A11G327500' => 'ghi', 'Gohir.A12G101800' => 'ghi', 'Gohir.D01G211200' => 'ghi', 'Gohir.D07G139200' => 'ghi', 'Gohir.D07G152100' => 'ghi', 'Gohir.D08G192600' => 'ghi', 'Gohir.D09G189200' => 'ghi', 'Gohir.D10G212000' => 'ghi', 'Gohir.D11G085200' => 'ghi', 'Gohir.D11G346400' => 'ghi', 'Gohir.D12G104800' => 'ghi', 'Gorai.001G151300' => 'gra', 'Gorai.001G174100' => 'gra', 'Gorai.002G257000' => 'gra', 'Gorai.004G202600' => 'gra', 'Gorai.007G090900' => 'gra', 'Gorai.007G376700' => 'gra', 'Gorai.008G114100' => 'gra', 'Gorai.011G237900' => 'gra', 'GSVIVG01005450001' => 'vvi', 'GSVIVG01016232001' => 'vvi', 'GSVIVG01026157001' => 'vvi', 'GSVIVG01027419001' => 'vvi', 'GSVIVG01027631001' => 'vvi', 'GSVIVG01034143001' => 'vvi', 'HanXRQChr03g0093921' => 'han', 'HanXRQChr04g0120001' => 'han', 'HanXRQChr04g0122561' => 'han', 'HanXRQChr09g0246851' => 'han', 'HanXRQChr10g0293311' => 'han', 'HanXRQChr13g0425231' => 'han', 'HanXRQChr16g0532571' => 'han', 'Haze_09050' => 'cav', 'Haze_15715' => 'cav', 'Haze_15716' => 'cav', 'Haze_16803' => 'cav', 'Haze_16850' => 'cav', 'Hma1.2p1_0301F.1_g118655' => 'hma', 'Hma1.2p1_0309F.1_g120590' => 'hma', 'Hma1.2p1_0936F.1_g238900' => 'hma', 'Hma1.2p1_3552F.1_g336740' => 'hma', 'HPP92_003520' => 'vpl', 'HPP92_006628' => 'vpl', 'HPP92_006645' => 'vpl', 'HPP92_014669' => 'vpl', 'HPP92_015077' => 'vpl', 'Hund16742' => 'sun', 'Hund17022' => 'sun', 'Lalb_Chr02g0152131' => 'lal', 'Lalb_Chr05g0225371' => 'lal', 'Lalb_Chr07g0189841' => 'lal', 'Lalb_Chr07g0192961' => 'lal', 'Lalb_Chr12g0208221' => 'lal', 'Lalb_Chr13g0291211' => 'lal', 'Lalb_Chr13g0291781' => 'lal', 'Lalb_Chr18g0044651' => 'lal', 'Lalb_Chr21g0313731' => 'lal', 'Lj1g0022533' => 'lja', 'Lj2A18T50' => 'lonja', 'Lj2A92G93' => 'lonja', 'Lj3A965T73' => 'lonja', 'Lj3g0000673' => 'lja', 'Lj3g0002666' => 'lja', 'Lj4g0016985' => 'lja', 'Lj5g0003625' => 'lja', 'Lj7A529G36' => 'lonja', 'Lj9A569T49' => 'lonja', 'Lj9A604T63' => 'lonja', 'Lsat_1_v5_gn_3_132060' => 'lsa', 'Lsat_1_v5_gn_4_68941' => 'lsa', 'Lsat_1_v5_gn_5_95580' => 'lsa', 'Lsat_1_v5_gn_7_161' => 'lsa', 'Lsat_1_v5_gn_7_7041' => 'lsa', 'Lsat_1_v5_gn_9_33481' => 'lsa', 'Lsat_1_v5_gn_9_68260' => 'lsa', 'Manes.01G073100' => 'mes', 'Manes.01G266300' => 'mes', 'Manes.02G033300' => 'mes', 'Manes.05G017900' => 'mes', 'Manes.05G046100' => 'mes', 'Manes.08G080900' => 'mes', 'Manes.10G049400' => 'mes', 'Mapoly0009s0186' => 'mpo', 'Mapoly0036s0118' => 'mpo', 'Mapoly0101s0046' => 'mpo', 'MBI04_g30218_MAGBIO' => 'mbi', 'MBI04_g35564_MAGBIO' => 'mbi', 'MBI12_g34011_MAGBIO' => 'mbi', 'MBI14_g04655_MAGBIO' => 'mbi', 'MCO07G653' => 'mco', 'MCO10G173' => 'mco', 'MD01G1087100' => 'mdo', 'MD01G1104200' => 'mdo', 'MD02G1205100' => 'mdo', 'MD04G1079200' => 'mdo', 'MD04G1131400' => 'mdo', 'MD07G1121600' => 'mdo', 'MD07G1157300' => 'mdo', 'MD07G1171000' => 'mdo', 'MD12G1144500' => 'mdo', 'Medtr1g094610' => 'mtr', 'Medtr4g021795' => 'mtr', 'Medtr4g023760' => 'mtr', 'Medtr7g118050' => 'mtr', 'MELO3C005582.2' => 'cme', 'MELO3C005989.2' => 'cme', 'MELO3C006192.2' => 'cme', 'MELO3C009248.2' => 'cme', 'MELO3C019817.2' => 'cme', 'Migut.B01625' => 'egut', 'Migut.B01915' => 'egut', 'Migut.F01721' => 'egut', 'Migut.J00314' => 'egut', 'MSTRG.20742' => 'ama', 'MSTRG.8134' => 'ama', 'Nitab4.5_0000096g0010' => 'nta', 'Nitab4.5_0000202g0030' => 'nta', 'Nitab4.5_0000216g0370' => 'nta', 'Nitab4.5_0000457g0230' => 'nta', 'Nitab4.5_0001702g0170' => 'nta', 'Nitab4.5_0003607g0010' => 'nta', 'Nitab4.5_0004917g0020' => 'nta', 'Nitab4.5_0007059g0010' => 'nta', 'Nitab4.5_0007184g0010' => 'nta', 'Nitab4.5_0007346g0020' => 'nta', 'Nn1g00410' => 'nnu', 'Nn1g01252' => 'nnu', 'Nn2g11168' => 'nnu', 'Nn2g13403' => 'nnu', 'Nn2g13760' => 'nnu', 'Nn4g26380' => 'nnu', 'Oeu000806.2' => 'oeu', 'Oeu005788.1' => 'oeu', 'Oeu006900.3' => 'oeu', 'Oeu007797.1' => 'oeu', 'Oeu011932.1' => 'oeu', 'Oeu022739.1' => 'oeu', 'Oeu037918.1' => 'oeu', 'Oeu055490.2' => 'oeu', 'Os01g0844400' => 'osa', 'Os02g0819100' => 'osa', 'Os03g0804300' => 'osa', 'Os05g0458000' => 'osa', 'Os07g0467800' => 'osa', 'Os12g0602200' => 'osa', 'Peaxi162Scf00013g03444' => 'pax', 'Peaxi162Scf00094g01120' => 'pax', 'Peaxi162Scf00191g01211' => 'pax', 'Peaxi162Scf00238g01110' => 'pax', 'Peaxi162Scf00330g00719' => 'pax', 'Peaxi162Scf00627g00018' => 'pax', 'PGR031G2686' => 'pgr', 'PGR042G0809' => 'pgr', 'PGR142G0193' => 'pgr', 'PGSC0003DMG400011066' => 'stu', 'PGSC0003DMG400012041' => 'stu', 'PGSC0003DMG400013678' => 'stu', 'PGSC0003DMG400023477' => 'stu', 'PGSC0003DMG400025956' => 'stu', 'PGSC0003DMG401019151' => 'stu', 'Phvul.006G116400' => 'pvu', 'Phvul.007G097300' => 'pvu', 'Phvul.010G015000' => 'pvu', 'Phvul.010G083900' => 'pvu', 'Potri.001G117100' => 'ptr', 'Potri.002G147300' => 'ptr', 'Potri.003G115600' => 'ptr', 'Potri.006G087400' => 'ptr', 'Potri.010G226100' => 'ptr', 'Potri.014G069200' => 'ptr', 'Potri.014G104000' => 'ptr', 'Potri.016G100200' => 'ptr', 'Pp3c10_20450' => 'ppa', 'Pp3c1_42400' => 'ppa', 'Pp3c3_24390' => 'ppa', 'Pp3c3_2860' => 'ppa', 'PRCOL_00003193' => 'pco', 'Prupe.2G144500' => 'ppe', 'Prupe.2G195700' => 'ppe', 'Prupe.2G209800' => 'ppe', 'Prupe.5G080000' => 'ppe', 'Prupe.6G257900' => 'ppe', 'Psat3g001160' => 'psa', 'Psat6g181880' => 'psa', 'Psat7g233720' => 'psa', 'PSO063G7587' => 'pso', 'PSO339G2145' => 'pso', 'PSO339G3369' => 'pso', 'PSO478G2747' => 'pso', 'PSO513G0140' => 'pso', 'PSO782G1614' => 'pso', 'PSO782G4889' => 'pso', 'PSO782G5485' => 'pso', 'PSO801G0241' => 'pso', 'QL07p048854' => 'qlo', 'QL08p046745' => 'qlo', 'QL08p052606' => 'qlo', 'QL08p053414' => 'qlo', 'QL08p054868' => 'qlo', 'RcHm_v2.0_Chr1g0350251' => 'rch', 'RcHm_v2.0_Chr1g0360851' => 'rch', 'RcHm_v2.0_Chr1g0362791' => 'rch', 'RcHm_v2.0_Chr3g0466281' => 'rch', 'RcHm_v2.0_Chr7g0201481' => 'rch', 'Rhsim01G0148600' => 'rsi', 'Rhsim05G0194400' => 'rsi', 'Rhsim07G0000700' => 'rsi', 'Rhsim07G0000800' => 'rsi', 'Rhsim07G0027900' => 'rsi', 'Rhsim09G0149500' => 'rsi', 'RhsimUnG0186900' => 'rsi', 'Sabra01G0089900' => 'sbr', 'Sabra02G0114700' => 'sbr', 'Sabra02G0116300' => 'sbr', 'Sabra03G0080100' => 'sbr', 'Sabra08G0024300' => 'sbr', 'Sabra10G0174300' => 'sbr', 'Sabra14G0048900' => 'sbr', 'Sabra14G0076500' => 'sbr', 'SalBow5G2513' => 'sbo', 'Sc01g0002300' => 'sci', 'Sc01g0004450' => 'sci', 'Sc06g0001680' => 'sci', 'Sc23g0003580' => 'sci', 'Sed0000913' => 'sed', 'Sed0001655' => 'sed', 'Sed0007745' => 'sed', 'Sed0010951' => 'sed', 'Sed0017599' => 'sed', 'Sed0021405' => 'sed', 'Sed0022810' => 'sed', 'SEGI_07099' => 'sgi', 'SEGI_11931' => 'sgi', 'SEGI_13187' => 'sgi', 'SEGI_29958' => 'sgi', 'SEGI_36351' => 'sgi', 'SGA_v2.0_scaffold126G33770' => 'sas', 'SGA_v2.0_scaffold153G37003' => 'sas', 'SGA_v2.0_scaffold2G01359' => 'sas', 'SGA_v2.0_scaffold5G03064' => 'sas', 'SGA_v2.0_scaffold95G28903' => 'sas', 'SHI12701' => 'shi', 'SHI26410' => 'shi', 'SHI38997' => 'shi', 'SHI53759' => 'shi', 'SHI53886' => 'shi', 'SHI54714' => 'shi', 'SMO011G0041' => 'smo', 'SMO146G0251' => 'smo', 'SMO160G0004' => 'smo', 'SMO174G0057' => 'smo', 'SMO244G0089' => 'smo', 'SMO296G0011' => 'smo', 'Solyc01g091280.3' => 'sly', 'Solyc05g047610.3' => 'sly', 'Solyc05g047640.3' => 'sly', 'Solyc05g055630.3' => 'sly', 'Solyc10g018160.2' => 'sly', 'Solyc10g084820.2' => 'sly', 'Solyc10g086565.2' => 'sly', 'Sopen01g037030' => 'spe', 'Sopen05g027920' => 'spe', 'Sopen05g034070' => 'spe', 'Sopen10g007260' => 'spe', 'Sopen10g034260' => 'spe', 'Sopen10g035950' => 'spe', 'Sp3g07710' => 'spa', 'Sp4g27420' => 'spa', 'Sp5g02450' => 'spa', 'Sp6g01280' => 'spa', 'Sp6g38480' => 'spa', 'Sp7g20780' => 'spa', 'TAR374G1413' => 'tar', 'TAR623G1777' => 'tar', 'TAR629G2370' => 'tar', 'TAR633G1759' => 'tar', 'TAR636G3387' => 'tar', 'THA.LOC104802447' => 'tha', 'THA.LOC104813916' => 'tha', 'THA.LOC104816423' => 'tha', 'THA.LOC104817246' => 'tha', 'THA.LOC104825895' => 'tha', 'Thecc.01G335200' => 'tca', 'Thecc.01G377400' => 'tca', 'Thecc.03G262200' => 'tca', 'Thecc.05G036800' => 'tca', 'Thecc.10G080500' => 'tca', 'Thecc.10G080800' => 'tca', 'Thhalv10001560m.g' => 'esa', 'Thhalv10006120m.g' => 'esa', 'Thhalv10014375m.g' => 'esa', 'Thhalv10021264m.g' => 'esa', 'Thhalv10028856m.g' => 'esa', 'TPR.G1914' => 'tpr', 'TPR.G4757' => 'tpr', 'TPR.G5595' => 'tpr', 'TWI14G0952' => 'twi', 'TWI14G1307' => 'twi', 'TWI38G2143' => 'twi', 'TWI59G0826' => 'twi', 'TWI77G0527' => 'twi', 'TWI81G0150' => 'twi', 'unitig_21.g21018' => 'ugi', 'unitig_26.g9725' => 'ugi', 'unitig_744.g24653' => 'ugi', 'unitig_749.g13778' => 'ugi', 'unitig_899.g15035' => 'ugi', 'vmacro04296' => 'vma', 'vmacro04852' => 'vma', 'vmacro13404' => 'vma', 'vmacro20169' => 'vma', 'vmacro21014' => 'vma', 'VMungo0331G0237' => 'vmu', 'VMungo0331G0706' => 'vmu', 'VMungo0331G1361' => 'vmu', 'VMungo0331G1489' => 'vmu', 'VMungo0540G1037' => 'vmu', 'VMungo0720G2487' => 'vmu', 'VMungo0720G2721' => 'vmu', 'Zm00001eb086860' => 'zma', 'Zm00001eb104760' => 'zma', 'Zm00001eb148220' => 'zma', 'Zm00001eb259030' => 'zma', 'Zm00001eb289590' => 'zma', 'Zm00001eb420150' => 'zma' ) $gf_id = 'HOM05D000968' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000968' ) $data_identifier = 'HOM05D000968' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 19, 'bol' => (int) 9, 'bra' => (int) 12, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 5, 'ccan' => (int) 7, 'cde' => (int) 5, 'cfa' => (int) 8, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 4, 'dca' => (int) 5, 'din' => (int) 5, 'dzi' => (int) 12, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 25, 'fve' => (int) 5, 'gma' => (int) 9, 'ghi' => (int) 18, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 7, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 5, 'sun' => (int) 2, 'lal' => (int) 9, 'lja' => (int) 5, 'lonja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 9, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 2, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 3, 'stu' => (int) 6, 'pvu' => (int) 4, 'ptr' => (int) 8, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 3, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 1, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 5, 'sas' => (int) 5, 'shi' => (int) 6, 'smo' => (int) 6, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 3, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420150' $species_info = array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ) $local_species = 'bvu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000968', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p31690' => 'bna', 'A03p36040' => 'bna', 'A03p53730' => 'bna', 'A04p01410' => 'bna', 'A05p05420' => 'bna', 'A05p39630' => 'bna', 'A05p39640' => 'bna', 'A09p00970' => 'bna', 'A09p53060' => 'bna', 'A10p31890' => 'bna', 'Aa31LG10G15040' => 'aar', 'Aa31LG1G21090' => 'aar', 'Aa31LG1G26900' => 'aar', 'Aa31LG3G1820' => 'aar', 'Aa31LG5G1100' => 'aar', 'Aa31LG6G4740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2265' => 'aag', 'Actinidia07998' => 'ach', 'Actinidia11266' => 'ach', 'Actinidia12682' => 'ach', 'Actinidia26479' => 'ach', 'Actinidia31406' => 'ach', 'Actinidia32437' => 'ach', 'Actinidia38862' => 'ach', 'Ah.05g174230' => 'amhyb', 'Ah.05g179070' => 'amhyb', 'Ah.05g179090' => 'amhyb', 'Ah.12g059950' => 'amhyb', 'AL3G20480' => 'aly', 'AL4G44520' => 'aly', 'AL5G43110' => 'aly', 'AL6G13890' => 'aly', 'AL6G52620' => 'aly', 'AL7G30830' => 'aly', 'Aqoxy1G00899' => 'aox', 'Aqoxy5G04333' => 'aox', 'Aqoxy7G00641' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3IZ0NN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4EF6AW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W9P8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79GA3M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C43NQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFCU6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G95YVJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCHK29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LU1UG8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX91RN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGB4B1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8DA0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9H7JI' => 'arhy', 'AT3G09320' => 'ath', 'AT3G60800' => 'ath', 'AT4G00840' => 'ath', 'AT4G22750' => 'ath', 'AT5G04270' => 'ath', 'ATR0090G003' => 'atr', 'ATR0559G349' => 'atr', 'ATR0680G261' => 'atr', 'ATR0810G048' => 'atr', 'Atru.chr12.831' => 'acertr', 'Atru.chr5.303' => 'acertr', 'Atru.chr5.748' => 'acertr', 'Atru.chr8.1999' => 'acertr', 'Atru.chr9.1436' => 'acertr', 'AUR62004211' => 'cqu', 'AUR62004548' => 'cqu', 'AUR62013637' => 'cqu', 'AUR62022662' => 'cqu', 'AUR62025777' => 'cqu', 'AUR62042386' => 'cqu', 'BcaB01g02310' => 'bca', 'BcaB01g06062' => 'bca', 'BcaB02g08975' => 'bca', 'BcaB02g08980' => 'bca', 'BcaC01g04228' => 'bca', 'BcaC01g06830' => 'bca', 'BcaC02g10186' => 'bca', 'BcaC02g12214' => 'bca', 'BcaC04g24101' => 'bca', 'BcaC05g29520' => 'bca', 'BcaC05g29661' => 'bca', 'BcaC06g32130' => 'bca', 'BcaC06g32131' => 'bca', 'BcaC07g40601' => 'bca', 'BcaC07g42641' => 'bca', 'BcaNung01038' => 'bca', 'BcaNung01676' => 'bca', 'BcaNung02480' => 'bca', 'BcaNung07376' => 'bca', 'BolC3t16146H' => 'bol', 'BolC3t16637H' => 'bol', 'BolC4t22257H' => 'bol', 'BolC4t24728H' => 'bol', 'BolC5t34517H' => 'bol', 'BolC7t45703H' => 'bol', 'BolC8t51166H' => 'bol', 'BolC9t53038H' => 'bol', 'BolC9t60000H' => 'bol', 'BraA01t01345Z' => 'bra', 'BraA01t01346Z' => 'bra', 'BraA01t01348Z' => 'bra', 'BraA03t12347Z' => 'bra', 'BraA03t12775Z' => 'bra', 'BraA03t14439Z' => 'bra', 'BraA04t15860Z' => 'bra', 'BraA05t19511Z' => 'bra', 'BraA05t22746Z' => 'bra', 'BraA09t35767Z' => 'bra', 'BraA09t40732Z' => 'bra', 'BraA10t45233Z' => 'bra', 'C03p38720' => 'bna', 'C03p43680' => 'bna', 'C04p06350' => 'bna', 'C04p31800' => 'bna', 'C05p58680' => 'bna', 'C07p52110' => 'bna', 'C08p35760' => 'bna', 'C09p01050' => 'bna', 'C09p72600' => 'bna', 'CAN.G106.2' => 'can', 'CAN.G1482.1' => 'can', 'CAN.G324.12' => 'can', 'CAN.G388.20' => 'can', 'CAN.G412.7' => 'can', 'CAN.G694.32' => 'can', 'CAN.G92.12' => 'can', 'CANSAT11G2353' => 'cansat', 'CANSAT21G1398' => 'cansat', 'CANSAT56G2456' => 'cansat', 'CANSAT56G3031' => 'cansat', 'CANSAT56G4539' => 'cansat', 'CARHR083680' => 'chi', 'CARHR171190' => 'chi', 'CARHR209010' => 'chi', 'CARHR229680' => 'chi', 'CARHR249490' => 'chi', 'Carub.0003s0844' => 'cru', 'Carub.0005s2755' => 'cru', 'Carub.0006s0322' => 'cru', 'Carub.0006s3586' => 'cru', 'Carub.0007s1855' => 'cru', 'Ca_07808_v3' => 'car', 'Ca_09535_v3' => 'car', 'Ca_10548_v3' => 'car', 'Ca_19913_v3' => 'car', 'Ca_19916_v3' => 'car', 'Ca_19975_v3' => 'car', 'CBR_g22876' => 'cbr', 'CBR_g22879' => 'cbr', 'CBR_g38491' => 'cbr', 'CBR_g54185' => 'cbr', 'CBR_g54190' => 'cbr', 'Cc02_g11020' => 'ccan', 'Cc02_g23920' => 'ccan', 'Cc02_g39860' => 'ccan', 'Cc02_g39870' => 'ccan', 'Cc03_g06760' => 'ccan', 'Cc06_g02450' => 'ccan', 'Cc09_g09450' => 'ccan', 'CDE02G1959' => 'cde', 'CDE04G0600' => 'cde', 'CDE07G1996' => 'cde', 'CDE07G2078' => 'cde', 'CDE11G0611' => 'cde', 'Cfa001683' => 'cfa', 'Cfa001734' => 'cfa', 'Cfa001737' => 'cfa', 'Cfa003751' => 'cfa', 'Cfa012019' => 'cfa', 'Cfa017353' => 'cfa', 'Cfa017732' => 'cfa', 'Cfa022464' => 'cfa', 'Ciclev10012400m.g' => 'ccl', 'Ciclev10021242m.g' => 'ccl', 'Ciclev10021302m.g' => 'ccl', 'Ciclev10021463m.g' => 'ccl', 'Ciclev10032359m.g' => 'ccl', 'CiPaw.01G081000' => 'cil', 'CiPaw.01G262500' => 'cil', 'CiPaw.01G269800' => 'cil', 'CiPaw.02G168400' => 'cil', 'CiPaw.05G119500' => 'cil', 'CiPaw.11G147300' => 'cil', 'ClCG01G003630' => 'cla', 'ClCG05G000510' => 'cla', 'ClCG05G002300' => 'cla', 'ClCG08G007650' => 'cla', 'ClCG10G021250' => 'cla', 'COL.COLO4_06218' => 'col', 'COL.COLO4_12538' => 'col', 'COL.COLO4_14775' => 'col', 'COL.COLO4_23875' => 'col', 'Cpa.g.sc141.16' => 'cpa', 'Cpa.g.sc169.16' => 'cpa', 'Cpa.g.sc244.4' => 'cpa', 'Cpa.g.sc244.5' => 'cpa', 'Cpa.g.sc29.87' => 'cpa', 'Cpa.g.sc53.115' => 'cpa', 'Cre03.g207502' => 'cre', 'Cre06.g277000' => 'cre', 'Cre09.g394050' => 'cre', 'CsaV3_3G007680' => 'csa', 'CsaV3_3G009710' => 'csa', 'CsaV3_3G034790' => 'csa', 'CsaV3_5G003750' => 'csa', 'CsaV3_6G036620' => 'csa', 'CSS0002288' => 'camsi', 'CSS0011250' => 'camsi', 'CSS0021619' => 'camsi', 'CSS0046701' => 'camsi', 'DCAR_006420' => 'dca', 'DCAR_006865' => 'dca', 'DCAR_008558' => 'dca', 'DCAR_028754' => 'dca', 'DCAR_028755' => 'dca', 'Dinv31218' => 'din', 'Dinv32371' => 'din', 'Dinv34250' => 'din', 'Dinv37156' => 'din', 'Dinv43704' => 'din', 'Duzib093G1811' => 'dzi', 'Duzib106G1622' => 'dzi', 'Duzib114G0504' => 'dzi', 'Duzib128G0338' => 'dzi', 'Duzib128G1577' => 'dzi', 'Duzib133G0104' => 'dzi', 'Duzib133G1080' => 'dzi', 'Duzib138G0324' => 'dzi', 'Duzib138G0394' => 'dzi', 'Duzib205G0122' => 'dzi', 'Duzib268G1020' => 'dzi', 'Duzib268G1359' => 'dzi', 'ECA232G3929' => 'eca', 'ECA236G2210' => 'eca', 'ECA236G2287' => 'eca', 'ECA240G4568' => 'eca', 'ECA247G0894' => 'eca', 'EL10Ac1g00200' => 'bvu', 'EL10Ac1g00886' => 'bvu', 'EL10As1g23091' => 'bvu', 'EL10As1g23092' => 'bvu', 'Eucgr.A01284' => 'egr', 'Eucgr.A01285' => 'egr', 'Eucgr.D02456' => 'egr', 'Eucgr.E00018' => 'egr', 'Eucgr.E01439' => 'egr', 'Eucgr.G02859' => 'egr', 'FAN01G0168' => 'fan', 'FAN01G0453' => 'fan', 'FAN01G2761' => 'fan', 'FAN02G1239' => 'fan', 'FAN03G0645' => 'fan', 'FAN03G2707' => 'fan', 'FAN03G2978' => 'fan', 'FAN04G0227' => 'fan', 'FAN06G0091' => 'fan', 'FAN06G1418' => 'fan', 'FAN06G1512' => 'fan', 'FAN06G1986' => 'fan', 'FAN06G2905' => 'fan', 'FAN06G4325' => 'fan', 'FAN08G0033' => 'fan', 'FAN09G0642' => 'fan', 'FAN10G1763' => 'fan', 'FAN10G2026' => 'fan', 'FAN10G2513' => 'fan', 'FAN10G3402' => 'fan', 'FAN10G3564' => 'fan', 'FAN10G3987' => 'fan', 'FAN13G1490' => 'fan', 'FAN14G5857' => 'fan', 'FAN18G1188' => 'fan', 'FvH4_5g00750' => 'fve', 'FvH4_6g13410' => 'fve', 'FvH4_7g11740' => 'fve', 'FvH4_7g17410' => 'fve', 'FvH4_7g18860' => 'fve', 'Glyma.01G099100' => 'gma', 'Glyma.01G142300' => 'gma', 'Glyma.03G025500' => 'gma', 'Glyma.03G069700' => 'gma', 'Glyma.03G260000' => 'gma', 'Glyma.09G269800' => 'gma', 'Glyma.10G208700' => 'gma', 'Glyma.18G220400' => 'gma', 'Glyma.20G182000' => 'gma', 'Gohir.A01G221726' => 'ghi', 'Gohir.A07G134600' => 'ghi', 'Gohir.A07G146000' => 'ghi', 'Gohir.A08G173900' => 'ghi', 'Gohir.A09G194900' => 'ghi', 'Gohir.A10G204100' => 'ghi', 'Gohir.A11G080600' => 'ghi', 'Gohir.A11G327500' => 'ghi', 'Gohir.A12G101800' => 'ghi', 'Gohir.D01G211200' => 'ghi', 'Gohir.D07G139200' => 'ghi', 'Gohir.D07G152100' => 'ghi', 'Gohir.D08G192600' => 'ghi', 'Gohir.D09G189200' => 'ghi', 'Gohir.D10G212000' => 'ghi', 'Gohir.D11G085200' => 'ghi', 'Gohir.D11G346400' => 'ghi', 'Gohir.D12G104800' => 'ghi', 'Gorai.001G151300' => 'gra', 'Gorai.001G174100' => 'gra', 'Gorai.002G257000' => 'gra', 'Gorai.004G202600' => 'gra', 'Gorai.007G090900' => 'gra', 'Gorai.007G376700' => 'gra', 'Gorai.008G114100' => 'gra', 'Gorai.011G237900' => 'gra', 'GSVIVG01005450001' => 'vvi', 'GSVIVG01016232001' => 'vvi', 'GSVIVG01026157001' => 'vvi', 'GSVIVG01027419001' => 'vvi', 'GSVIVG01027631001' => 'vvi', 'GSVIVG01034143001' => 'vvi', 'HanXRQChr03g0093921' => 'han', 'HanXRQChr04g0120001' => 'han', 'HanXRQChr04g0122561' => 'han', 'HanXRQChr09g0246851' => 'han', 'HanXRQChr10g0293311' => 'han', 'HanXRQChr13g0425231' => 'han', 'HanXRQChr16g0532571' => 'han', 'Haze_09050' => 'cav', 'Haze_15715' => 'cav', 'Haze_15716' => 'cav', 'Haze_16803' => 'cav', 'Haze_16850' => 'cav', 'Hma1.2p1_0301F.1_g118655' => 'hma', 'Hma1.2p1_0309F.1_g120590' => 'hma', 'Hma1.2p1_0936F.1_g238900' => 'hma', 'Hma1.2p1_3552F.1_g336740' => 'hma', 'HPP92_003520' => 'vpl', 'HPP92_006628' => 'vpl', 'HPP92_006645' => 'vpl', 'HPP92_014669' => 'vpl', 'HPP92_015077' => 'vpl', 'Hund16742' => 'sun', 'Hund17022' => 'sun', 'Lalb_Chr02g0152131' => 'lal', 'Lalb_Chr05g0225371' => 'lal', 'Lalb_Chr07g0189841' => 'lal', 'Lalb_Chr07g0192961' => 'lal', 'Lalb_Chr12g0208221' => 'lal', 'Lalb_Chr13g0291211' => 'lal', 'Lalb_Chr13g0291781' => 'lal', 'Lalb_Chr18g0044651' => 'lal', 'Lalb_Chr21g0313731' => 'lal', 'Lj1g0022533' => 'lja', 'Lj2A18T50' => 'lonja', 'Lj2A92G93' => 'lonja', 'Lj3A965T73' => 'lonja', 'Lj3g0000673' => 'lja', 'Lj3g0002666' => 'lja', 'Lj4g0016985' => 'lja', 'Lj5g0003625' => 'lja', 'Lj7A529G36' => 'lonja', 'Lj9A569T49' => 'lonja', 'Lj9A604T63' => 'lonja', 'Lsat_1_v5_gn_3_132060' => 'lsa', 'Lsat_1_v5_gn_4_68941' => 'lsa', 'Lsat_1_v5_gn_5_95580' => 'lsa', 'Lsat_1_v5_gn_7_161' => 'lsa', 'Lsat_1_v5_gn_7_7041' => 'lsa', 'Lsat_1_v5_gn_9_33481' => 'lsa', 'Lsat_1_v5_gn_9_68260' => 'lsa', 'Manes.01G073100' => 'mes', 'Manes.01G266300' => 'mes', 'Manes.02G033300' => 'mes', 'Manes.05G017900' => 'mes', 'Manes.05G046100' => 'mes', 'Manes.08G080900' => 'mes', 'Manes.10G049400' => 'mes', 'Mapoly0009s0186' => 'mpo', 'Mapoly0036s0118' => 'mpo', 'Mapoly0101s0046' => 'mpo', 'MBI04_g30218_MAGBIO' => 'mbi', 'MBI04_g35564_MAGBIO' => 'mbi', 'MBI12_g34011_MAGBIO' => 'mbi', 'MBI14_g04655_MAGBIO' => 'mbi', 'MCO07G653' => 'mco', 'MCO10G173' => 'mco', 'MD01G1087100' => 'mdo', 'MD01G1104200' => 'mdo', 'MD02G1205100' => 'mdo', 'MD04G1079200' => 'mdo', 'MD04G1131400' => 'mdo', 'MD07G1121600' => 'mdo', 'MD07G1157300' => 'mdo', 'MD07G1171000' => 'mdo', 'MD12G1144500' => 'mdo', 'Medtr1g094610' => 'mtr', 'Medtr4g021795' => 'mtr', 'Medtr4g023760' => 'mtr', 'Medtr7g118050' => 'mtr', 'MELO3C005582.2' => 'cme', 'MELO3C005989.2' => 'cme', 'MELO3C006192.2' => 'cme', 'MELO3C009248.2' => 'cme', 'MELO3C019817.2' => 'cme', 'Migut.B01625' => 'egut', 'Migut.B01915' => 'egut', 'Migut.F01721' => 'egut', 'Migut.J00314' => 'egut', 'MSTRG.20742' => 'ama', 'MSTRG.8134' => 'ama', 'Nitab4.5_0000096g0010' => 'nta', 'Nitab4.5_0000202g0030' => 'nta', 'Nitab4.5_0000216g0370' => 'nta', 'Nitab4.5_0000457g0230' => 'nta', 'Nitab4.5_0001702g0170' => 'nta', 'Nitab4.5_0003607g0010' => 'nta', 'Nitab4.5_0004917g0020' => 'nta', 'Nitab4.5_0007059g0010' => 'nta', 'Nitab4.5_0007184g0010' => 'nta', 'Nitab4.5_0007346g0020' => 'nta', 'Nn1g00410' => 'nnu', 'Nn1g01252' => 'nnu', 'Nn2g11168' => 'nnu', 'Nn2g13403' => 'nnu', 'Nn2g13760' => 'nnu', 'Nn4g26380' => 'nnu', 'Oeu000806.2' => 'oeu', 'Oeu005788.1' => 'oeu', 'Oeu006900.3' => 'oeu', 'Oeu007797.1' => 'oeu', 'Oeu011932.1' => 'oeu', 'Oeu022739.1' => 'oeu', 'Oeu037918.1' => 'oeu', 'Oeu055490.2' => 'oeu', 'Os01g0844400' => 'osa', 'Os02g0819100' => 'osa', 'Os03g0804300' => 'osa', 'Os05g0458000' => 'osa', 'Os07g0467800' => 'osa', 'Os12g0602200' => 'osa', 'Peaxi162Scf00013g03444' => 'pax', 'Peaxi162Scf00094g01120' => 'pax', 'Peaxi162Scf00191g01211' => 'pax', 'Peaxi162Scf00238g01110' => 'pax', 'Peaxi162Scf00330g00719' => 'pax', 'Peaxi162Scf00627g00018' => 'pax', 'PGR031G2686' => 'pgr', 'PGR042G0809' => 'pgr', 'PGR142G0193' => 'pgr', 'PGSC0003DMG400011066' => 'stu', 'PGSC0003DMG400012041' => 'stu', 'PGSC0003DMG400013678' => 'stu', 'PGSC0003DMG400023477' => 'stu', 'PGSC0003DMG400025956' => 'stu', 'PGSC0003DMG401019151' => 'stu', 'Phvul.006G116400' => 'pvu', 'Phvul.007G097300' => 'pvu', 'Phvul.010G015000' => 'pvu', 'Phvul.010G083900' => 'pvu', 'Potri.001G117100' => 'ptr', 'Potri.002G147300' => 'ptr', 'Potri.003G115600' => 'ptr', 'Potri.006G087400' => 'ptr', 'Potri.010G226100' => 'ptr', 'Potri.014G069200' => 'ptr', 'Potri.014G104000' => 'ptr', 'Potri.016G100200' => 'ptr', 'Pp3c10_20450' => 'ppa', 'Pp3c1_42400' => 'ppa', 'Pp3c3_24390' => 'ppa', 'Pp3c3_2860' => 'ppa', 'PRCOL_00003193' => 'pco', 'Prupe.2G144500' => 'ppe', 'Prupe.2G195700' => 'ppe', 'Prupe.2G209800' => 'ppe', 'Prupe.5G080000' => 'ppe', 'Prupe.6G257900' => 'ppe', 'Psat3g001160' => 'psa', 'Psat6g181880' => 'psa', 'Psat7g233720' => 'psa', 'PSO063G7587' => 'pso', 'PSO339G2145' => 'pso', 'PSO339G3369' => 'pso', 'PSO478G2747' => 'pso', 'PSO513G0140' => 'pso', 'PSO782G1614' => 'pso', 'PSO782G4889' => 'pso', 'PSO782G5485' => 'pso', 'PSO801G0241' => 'pso', 'QL07p048854' => 'qlo', 'QL08p046745' => 'qlo', 'QL08p052606' => 'qlo', 'QL08p053414' => 'qlo', 'QL08p054868' => 'qlo', 'RcHm_v2.0_Chr1g0350251' => 'rch', 'RcHm_v2.0_Chr1g0360851' => 'rch', 'RcHm_v2.0_Chr1g0362791' => 'rch', 'RcHm_v2.0_Chr3g0466281' => 'rch', 'RcHm_v2.0_Chr7g0201481' => 'rch', 'Rhsim01G0148600' => 'rsi', 'Rhsim05G0194400' => 'rsi', 'Rhsim07G0000700' => 'rsi', 'Rhsim07G0000800' => 'rsi', 'Rhsim07G0027900' => 'rsi', 'Rhsim09G0149500' => 'rsi', 'RhsimUnG0186900' => 'rsi', 'Sabra01G0089900' => 'sbr', 'Sabra02G0114700' => 'sbr', 'Sabra02G0116300' => 'sbr', 'Sabra03G0080100' => 'sbr', 'Sabra08G0024300' => 'sbr', 'Sabra10G0174300' => 'sbr', 'Sabra14G0048900' => 'sbr', 'Sabra14G0076500' => 'sbr', 'SalBow5G2513' => 'sbo', 'Sc01g0002300' => 'sci', 'Sc01g0004450' => 'sci', 'Sc06g0001680' => 'sci', 'Sc23g0003580' => 'sci', 'Sed0000913' => 'sed', 'Sed0001655' => 'sed', 'Sed0007745' => 'sed', 'Sed0010951' => 'sed', 'Sed0017599' => 'sed', 'Sed0021405' => 'sed', 'Sed0022810' => 'sed', 'SEGI_07099' => 'sgi', 'SEGI_11931' => 'sgi', 'SEGI_13187' => 'sgi', 'SEGI_29958' => 'sgi', 'SEGI_36351' => 'sgi', 'SGA_v2.0_scaffold126G33770' => 'sas', 'SGA_v2.0_scaffold153G37003' => 'sas', 'SGA_v2.0_scaffold2G01359' => 'sas', 'SGA_v2.0_scaffold5G03064' => 'sas', 'SGA_v2.0_scaffold95G28903' => 'sas', 'SHI12701' => 'shi', 'SHI26410' => 'shi', 'SHI38997' => 'shi', 'SHI53759' => 'shi', 'SHI53886' => 'shi', 'SHI54714' => 'shi', 'SMO011G0041' => 'smo', 'SMO146G0251' => 'smo', 'SMO160G0004' => 'smo', 'SMO174G0057' => 'smo', 'SMO244G0089' => 'smo', 'SMO296G0011' => 'smo', 'Solyc01g091280.3' => 'sly', 'Solyc05g047610.3' => 'sly', 'Solyc05g047640.3' => 'sly', 'Solyc05g055630.3' => 'sly', 'Solyc10g018160.2' => 'sly', 'Solyc10g084820.2' => 'sly', 'Solyc10g086565.2' => 'sly', 'Sopen01g037030' => 'spe', 'Sopen05g027920' => 'spe', 'Sopen05g034070' => 'spe', 'Sopen10g007260' => 'spe', 'Sopen10g034260' => 'spe', 'Sopen10g035950' => 'spe', 'Sp3g07710' => 'spa', 'Sp4g27420' => 'spa', 'Sp5g02450' => 'spa', 'Sp6g01280' => 'spa', 'Sp6g38480' => 'spa', 'Sp7g20780' => 'spa', 'TAR374G1413' => 'tar', 'TAR623G1777' => 'tar', 'TAR629G2370' => 'tar', 'TAR633G1759' => 'tar', 'TAR636G3387' => 'tar', 'THA.LOC104802447' => 'tha', 'THA.LOC104813916' => 'tha', 'THA.LOC104816423' => 'tha', 'THA.LOC104817246' => 'tha', 'THA.LOC104825895' => 'tha', 'Thecc.01G335200' => 'tca', 'Thecc.01G377400' => 'tca', 'Thecc.03G262200' => 'tca', 'Thecc.05G036800' => 'tca', 'Thecc.10G080500' => 'tca', 'Thecc.10G080800' => 'tca', 'Thhalv10001560m.g' => 'esa', 'Thhalv10006120m.g' => 'esa', 'Thhalv10014375m.g' => 'esa', 'Thhalv10021264m.g' => 'esa', 'Thhalv10028856m.g' => 'esa', 'TPR.G1914' => 'tpr', 'TPR.G4757' => 'tpr', 'TPR.G5595' => 'tpr', 'TWI14G0952' => 'twi', 'TWI14G1307' => 'twi', 'TWI38G2143' => 'twi', 'TWI59G0826' => 'twi', 'TWI77G0527' => 'twi', 'TWI81G0150' => 'twi', 'unitig_21.g21018' => 'ugi', 'unitig_26.g9725' => 'ugi', 'unitig_744.g24653' => 'ugi', 'unitig_749.g13778' => 'ugi', 'unitig_899.g15035' => 'ugi', 'vmacro04296' => 'vma', 'vmacro04852' => 'vma', 'vmacro13404' => 'vma', 'vmacro20169' => 'vma', 'vmacro21014' => 'vma', 'VMungo0331G0237' => 'vmu', 'VMungo0331G0706' => 'vmu', 'VMungo0331G1361' => 'vmu', 'VMungo0331G1489' => 'vmu', 'VMungo0540G1037' => 'vmu', 'VMungo0720G2487' => 'vmu', 'VMungo0720G2721' => 'vmu', 'Zm00001eb086860' => 'zma', 'Zm00001eb104760' => 'zma', 'Zm00001eb148220' => 'zma', 'Zm00001eb259030' => 'zma', 'Zm00001eb289590' => 'zma', 'Zm00001eb420150' => 'zma' ), 'gf_id' => 'HOM05D000968', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000968' ), 'data_identifier' => 'HOM05D000968', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000968', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p31690' => 'bna', 'A03p36040' => 'bna', 'A03p53730' => 'bna', 'A04p01410' => 'bna', 'A05p05420' => 'bna', 'A05p39630' => 'bna', 'A05p39640' => 'bna', 'A09p00970' => 'bna', 'A09p53060' => 'bna', 'A10p31890' => 'bna', 'Aa31LG10G15040' => 'aar', 'Aa31LG1G21090' => 'aar', 'Aa31LG1G26900' => 'aar', 'Aa31LG3G1820' => 'aar', 'Aa31LG5G1100' => 'aar', 'Aa31LG6G4740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2265' => 'aag', 'Actinidia07998' => 'ach', 'Actinidia11266' => 'ach', 'Actinidia12682' => 'ach', 'Actinidia26479' => 'ach', 'Actinidia31406' => 'ach', 'Actinidia32437' => 'ach', 'Actinidia38862' => 'ach', 'Ah.05g174230' => 'amhyb', 'Ah.05g179070' => 'amhyb', 'Ah.05g179090' => 'amhyb', 'Ah.12g059950' => 'amhyb', 'AL3G20480' => 'aly', 'AL4G44520' => 'aly', 'AL5G43110' => 'aly', 'AL6G13890' => 'aly', 'AL6G52620' => 'aly', 'AL7G30830' => 'aly', 'Aqoxy1G00899' => 'aox', 'Aqoxy5G04333' => 'aox', 'Aqoxy7G00641' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3IZ0NN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4EF6AW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W9P8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79GA3M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C43NQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFCU6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G95YVJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCHK29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LU1UG8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX91RN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGB4B1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8DA0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9H7JI' => 'arhy', 'AT3G09320' => 'ath', 'AT3G60800' => 'ath', 'AT4G00840' => 'ath', 'AT4G22750' => 'ath', 'AT5G04270' => 'ath', 'ATR0090G003' => 'atr', 'ATR0559G349' => 'atr', 'ATR0680G261' => 'atr', 'ATR0810G048' => 'atr', 'Atru.chr12.831' => 'acertr', 'Atru.chr5.303' => 'acertr', 'Atru.chr5.748' => 'acertr', 'Atru.chr8.1999' => 'acertr', 'Atru.chr9.1436' => 'acertr', 'AUR62004211' => 'cqu', 'AUR62004548' => 'cqu', 'AUR62013637' => 'cqu', 'AUR62022662' => 'cqu', 'AUR62025777' => 'cqu', 'AUR62042386' => 'cqu', 'BcaB01g02310' => 'bca', 'BcaB01g06062' => 'bca', 'BcaB02g08975' => 'bca', 'BcaB02g08980' => 'bca', 'BcaC01g04228' => 'bca', 'BcaC01g06830' => 'bca', 'BcaC02g10186' => 'bca', 'BcaC02g12214' => 'bca', 'BcaC04g24101' => 'bca', 'BcaC05g29520' => 'bca', 'BcaC05g29661' => 'bca', 'BcaC06g32130' => 'bca', 'BcaC06g32131' => 'bca', 'BcaC07g40601' => 'bca', 'BcaC07g42641' => 'bca', 'BcaNung01038' => 'bca', 'BcaNung01676' => 'bca', 'BcaNung02480' => 'bca', 'BcaNung07376' => 'bca', 'BolC3t16146H' => 'bol', 'BolC3t16637H' => 'bol', 'BolC4t22257H' => 'bol', 'BolC4t24728H' => 'bol', 'BolC5t34517H' => 'bol', 'BolC7t45703H' => 'bol', 'BolC8t51166H' => 'bol', 'BolC9t53038H' => 'bol', 'BolC9t60000H' => 'bol', 'BraA01t01345Z' => 'bra', 'BraA01t01346Z' => 'bra', 'BraA01t01348Z' => 'bra', 'BraA03t12347Z' => 'bra', 'BraA03t12775Z' => 'bra', 'BraA03t14439Z' => 'bra', 'BraA04t15860Z' => 'bra', 'BraA05t19511Z' => 'bra', 'BraA05t22746Z' => 'bra', 'BraA09t35767Z' => 'bra', 'BraA09t40732Z' => 'bra', 'BraA10t45233Z' => 'bra', 'C03p38720' => 'bna', 'C03p43680' => 'bna', 'C04p06350' => 'bna', 'C04p31800' => 'bna', 'C05p58680' => 'bna', 'C07p52110' => 'bna', 'C08p35760' => 'bna', 'C09p01050' => 'bna', 'C09p72600' => 'bna', 'CAN.G106.2' => 'can', 'CAN.G1482.1' => 'can', 'CAN.G324.12' => 'can', 'CAN.G388.20' => 'can', 'CAN.G412.7' => 'can', 'CAN.G694.32' => 'can', 'CAN.G92.12' => 'can', 'CANSAT11G2353' => 'cansat', 'CANSAT21G1398' => 'cansat', 'CANSAT56G2456' => 'cansat', 'CANSAT56G3031' => 'cansat', 'CANSAT56G4539' => 'cansat', 'CARHR083680' => 'chi', 'CARHR171190' => 'chi', 'CARHR209010' => 'chi', 'CARHR229680' => 'chi', 'CARHR249490' => 'chi', 'Carub.0003s0844' => 'cru', 'Carub.0005s2755' => 'cru', 'Carub.0006s0322' => 'cru', 'Carub.0006s3586' => 'cru', 'Carub.0007s1855' => 'cru', 'Ca_07808_v3' => 'car', 'Ca_09535_v3' => 'car', 'Ca_10548_v3' => 'car', 'Ca_19913_v3' => 'car', 'Ca_19916_v3' => 'car', 'Ca_19975_v3' => 'car', 'CBR_g22876' => 'cbr', 'CBR_g22879' => 'cbr', 'CBR_g38491' => 'cbr', 'CBR_g54185' => 'cbr', 'CBR_g54190' => 'cbr', 'Cc02_g11020' => 'ccan', 'Cc02_g23920' => 'ccan', 'Cc02_g39860' => 'ccan', 'Cc02_g39870' => 'ccan', 'Cc03_g06760' => 'ccan', 'Cc06_g02450' => 'ccan', 'Cc09_g09450' => 'ccan', 'CDE02G1959' => 'cde', 'CDE04G0600' => 'cde', 'CDE07G1996' => 'cde', 'CDE07G2078' => 'cde', 'CDE11G0611' => 'cde', 'Cfa001683' => 'cfa', 'Cfa001734' => 'cfa', 'Cfa001737' => 'cfa', 'Cfa003751' => 'cfa', 'Cfa012019' => 'cfa', 'Cfa017353' => 'cfa', 'Cfa017732' => 'cfa', 'Cfa022464' => 'cfa', 'Ciclev10012400m.g' => 'ccl', 'Ciclev10021242m.g' => 'ccl', 'Ciclev10021302m.g' => 'ccl', 'Ciclev10021463m.g' => 'ccl', 'Ciclev10032359m.g' => 'ccl', 'CiPaw.01G081000' => 'cil', 'CiPaw.01G262500' => 'cil', 'CiPaw.01G269800' => 'cil', 'CiPaw.02G168400' => 'cil', 'CiPaw.05G119500' => 'cil', 'CiPaw.11G147300' => 'cil', 'ClCG01G003630' => 'cla', 'ClCG05G000510' => 'cla', 'ClCG05G002300' => 'cla', 'ClCG08G007650' => 'cla', 'ClCG10G021250' => 'cla', 'COL.COLO4_06218' => 'col', 'COL.COLO4_12538' => 'col', 'COL.COLO4_14775' => 'col', 'COL.COLO4_23875' => 'col', 'Cpa.g.sc141.16' => 'cpa', 'Cpa.g.sc169.16' => 'cpa', 'Cpa.g.sc244.4' => 'cpa', 'Cpa.g.sc244.5' => 'cpa', 'Cpa.g.sc29.87' => 'cpa', 'Cpa.g.sc53.115' => 'cpa', 'Cre03.g207502' => 'cre', 'Cre06.g277000' => 'cre', 'Cre09.g394050' => 'cre', 'CsaV3_3G007680' => 'csa', 'CsaV3_3G009710' => 'csa', 'CsaV3_3G034790' => 'csa', 'CsaV3_5G003750' => 'csa', 'CsaV3_6G036620' => 'csa', 'CSS0002288' => 'camsi', 'CSS0011250' => 'camsi', 'CSS0021619' => 'camsi', 'CSS0046701' => 'camsi', 'DCAR_006420' => 'dca', 'DCAR_006865' => 'dca', 'DCAR_008558' => 'dca', 'DCAR_028754' => 'dca', 'DCAR_028755' => 'dca', 'Dinv31218' => 'din', 'Dinv32371' => 'din', 'Dinv34250' => 'din', 'Dinv37156' => 'din', 'Dinv43704' => 'din', 'Duzib093G1811' => 'dzi', 'Duzib106G1622' => 'dzi', 'Duzib114G0504' => 'dzi', 'Duzib128G0338' => 'dzi', 'Duzib128G1577' => 'dzi', 'Duzib133G0104' => 'dzi', 'Duzib133G1080' => 'dzi', 'Duzib138G0324' => 'dzi', 'Duzib138G0394' => 'dzi', 'Duzib205G0122' => 'dzi', 'Duzib268G1020' => 'dzi', 'Duzib268G1359' => 'dzi', 'ECA232G3929' => 'eca', 'ECA236G2210' => 'eca', 'ECA236G2287' => 'eca', 'ECA240G4568' => 'eca', 'ECA247G0894' => 'eca', 'EL10Ac1g00200' => 'bvu', 'EL10Ac1g00886' => 'bvu', 'EL10As1g23091' => 'bvu', 'EL10As1g23092' => 'bvu', 'Eucgr.A01284' => 'egr', 'Eucgr.A01285' => 'egr', 'Eucgr.D02456' => 'egr', 'Eucgr.E00018' => 'egr', 'Eucgr.E01439' => 'egr', 'Eucgr.G02859' => 'egr', 'FAN01G0168' => 'fan', 'FAN01G0453' => 'fan', 'FAN01G2761' => 'fan', 'FAN02G1239' => 'fan', 'FAN03G0645' => 'fan', 'FAN03G2707' => 'fan', 'FAN03G2978' => 'fan', 'FAN04G0227' => 'fan', 'FAN06G0091' => 'fan', 'FAN06G1418' => 'fan', 'FAN06G1512' => 'fan', 'FAN06G1986' => 'fan', 'FAN06G2905' => 'fan', 'FAN06G4325' => 'fan', 'FAN08G0033' => 'fan', 'FAN09G0642' => 'fan', 'FAN10G1763' => 'fan', 'FAN10G2026' => 'fan', 'FAN10G2513' => 'fan', 'FAN10G3402' => 'fan', 'FAN10G3564' => 'fan', 'FAN10G3987' => 'fan', 'FAN13G1490' => 'fan', 'FAN14G5857' => 'fan', 'FAN18G1188' => 'fan', 'FvH4_5g00750' => 'fve', 'FvH4_6g13410' => 'fve', 'FvH4_7g11740' => 'fve', 'FvH4_7g17410' => 'fve', 'FvH4_7g18860' => 'fve', 'Glyma.01G099100' => 'gma', 'Glyma.01G142300' => 'gma', 'Glyma.03G025500' => 'gma', 'Glyma.03G069700' => 'gma', 'Glyma.03G260000' => 'gma', 'Glyma.09G269800' => 'gma', 'Glyma.10G208700' => 'gma', 'Glyma.18G220400' => 'gma', 'Glyma.20G182000' => 'gma', 'Gohir.A01G221726' => 'ghi', 'Gohir.A07G134600' => 'ghi', 'Gohir.A07G146000' => 'ghi', 'Gohir.A08G173900' => 'ghi', 'Gohir.A09G194900' => 'ghi', 'Gohir.A10G204100' => 'ghi', 'Gohir.A11G080600' => 'ghi', 'Gohir.A11G327500' => 'ghi', 'Gohir.A12G101800' => 'ghi', 'Gohir.D01G211200' => 'ghi', 'Gohir.D07G139200' => 'ghi', 'Gohir.D07G152100' => 'ghi', 'Gohir.D08G192600' => 'ghi', 'Gohir.D09G189200' => 'ghi', 'Gohir.D10G212000' => 'ghi', 'Gohir.D11G085200' => 'ghi', 'Gohir.D11G346400' => 'ghi', 'Gohir.D12G104800' => 'ghi', 'Gorai.001G151300' => 'gra', 'Gorai.001G174100' => 'gra', 'Gorai.002G257000' => 'gra', 'Gorai.004G202600' => 'gra', 'Gorai.007G090900' => 'gra', 'Gorai.007G376700' => 'gra', 'Gorai.008G114100' => 'gra', 'Gorai.011G237900' => 'gra', 'GSVIVG01005450001' => 'vvi', 'GSVIVG01016232001' => 'vvi', 'GSVIVG01026157001' => 'vvi', 'GSVIVG01027419001' => 'vvi', 'GSVIVG01027631001' => 'vvi', 'GSVIVG01034143001' => 'vvi', 'HanXRQChr03g0093921' => 'han', 'HanXRQChr04g0120001' => 'han', 'HanXRQChr04g0122561' => 'han', 'HanXRQChr09g0246851' => 'han', 'HanXRQChr10g0293311' => 'han', 'HanXRQChr13g0425231' => 'han', 'HanXRQChr16g0532571' => 'han', 'Haze_09050' => 'cav', 'Haze_15715' => 'cav', 'Haze_15716' => 'cav', 'Haze_16803' => 'cav', 'Haze_16850' => 'cav', 'Hma1.2p1_0301F.1_g118655' => 'hma', 'Hma1.2p1_0309F.1_g120590' => 'hma', 'Hma1.2p1_0936F.1_g238900' => 'hma', 'Hma1.2p1_3552F.1_g336740' => 'hma', 'HPP92_003520' => 'vpl', 'HPP92_006628' => 'vpl', 'HPP92_006645' => 'vpl', 'HPP92_014669' => 'vpl', 'HPP92_015077' => 'vpl', 'Hund16742' => 'sun', 'Hund17022' => 'sun', 'Lalb_Chr02g0152131' => 'lal', 'Lalb_Chr05g0225371' => 'lal', 'Lalb_Chr07g0189841' => 'lal', 'Lalb_Chr07g0192961' => 'lal', 'Lalb_Chr12g0208221' => 'lal', 'Lalb_Chr13g0291211' => 'lal', 'Lalb_Chr13g0291781' => 'lal', 'Lalb_Chr18g0044651' => 'lal', 'Lalb_Chr21g0313731' => 'lal', 'Lj1g0022533' => 'lja', 'Lj2A18T50' => 'lonja', 'Lj2A92G93' => 'lonja', 'Lj3A965T73' => 'lonja', 'Lj3g0000673' => 'lja', 'Lj3g0002666' => 'lja', 'Lj4g0016985' => 'lja', 'Lj5g0003625' => 'lja', 'Lj7A529G36' => 'lonja', 'Lj9A569T49' => 'lonja', 'Lj9A604T63' => 'lonja', 'Lsat_1_v5_gn_3_132060' => 'lsa', 'Lsat_1_v5_gn_4_68941' => 'lsa', 'Lsat_1_v5_gn_5_95580' => 'lsa', 'Lsat_1_v5_gn_7_161' => 'lsa', 'Lsat_1_v5_gn_7_7041' => 'lsa', 'Lsat_1_v5_gn_9_33481' => 'lsa', 'Lsat_1_v5_gn_9_68260' => 'lsa', 'Manes.01G073100' => 'mes', 'Manes.01G266300' => 'mes', 'Manes.02G033300' => 'mes', 'Manes.05G017900' => 'mes', 'Manes.05G046100' => 'mes', 'Manes.08G080900' => 'mes', 'Manes.10G049400' => 'mes', 'Mapoly0009s0186' => 'mpo', 'Mapoly0036s0118' => 'mpo', 'Mapoly0101s0046' => 'mpo', 'MBI04_g30218_MAGBIO' => 'mbi', 'MBI04_g35564_MAGBIO' => 'mbi', 'MBI12_g34011_MAGBIO' => 'mbi', 'MBI14_g04655_MAGBIO' => 'mbi', 'MCO07G653' => 'mco', 'MCO10G173' => 'mco', 'MD01G1087100' => 'mdo', 'MD01G1104200' => 'mdo', 'MD02G1205100' => 'mdo', 'MD04G1079200' => 'mdo', 'MD04G1131400' => 'mdo', 'MD07G1121600' => 'mdo', 'MD07G1157300' => 'mdo', 'MD07G1171000' => 'mdo', 'MD12G1144500' => 'mdo', 'Medtr1g094610' => 'mtr', 'Medtr4g021795' => 'mtr', 'Medtr4g023760' => 'mtr', 'Medtr7g118050' => 'mtr', 'MELO3C005582.2' => 'cme', 'MELO3C005989.2' => 'cme', 'MELO3C006192.2' => 'cme', 'MELO3C009248.2' => 'cme', 'MELO3C019817.2' => 'cme', 'Migut.B01625' => 'egut', 'Migut.B01915' => 'egut', 'Migut.F01721' => 'egut', 'Migut.J00314' => 'egut', 'MSTRG.20742' => 'ama', 'MSTRG.8134' => 'ama', 'Nitab4.5_0000096g0010' => 'nta', 'Nitab4.5_0000202g0030' => 'nta', 'Nitab4.5_0000216g0370' => 'nta', 'Nitab4.5_0000457g0230' => 'nta', 'Nitab4.5_0001702g0170' => 'nta', 'Nitab4.5_0003607g0010' => 'nta', 'Nitab4.5_0004917g0020' => 'nta', 'Nitab4.5_0007059g0010' => 'nta', 'Nitab4.5_0007184g0010' => 'nta', 'Nitab4.5_0007346g0020' => 'nta', 'Nn1g00410' => 'nnu', 'Nn1g01252' => 'nnu', 'Nn2g11168' => 'nnu', 'Nn2g13403' => 'nnu', 'Nn2g13760' => 'nnu', 'Nn4g26380' => 'nnu', 'Oeu000806.2' => 'oeu', 'Oeu005788.1' => 'oeu', 'Oeu006900.3' => 'oeu', 'Oeu007797.1' => 'oeu', 'Oeu011932.1' => 'oeu', 'Oeu022739.1' => 'oeu', 'Oeu037918.1' => 'oeu', 'Oeu055490.2' => 'oeu', 'Os01g0844400' => 'osa', 'Os02g0819100' => 'osa', 'Os03g0804300' => 'osa', 'Os05g0458000' => 'osa', 'Os07g0467800' => 'osa', 'Os12g0602200' => 'osa', 'Peaxi162Scf00013g03444' => 'pax', 'Peaxi162Scf00094g01120' => 'pax', 'Peaxi162Scf00191g01211' => 'pax', 'Peaxi162Scf00238g01110' => 'pax', 'Peaxi162Scf00330g00719' => 'pax', 'Peaxi162Scf00627g00018' => 'pax', 'PGR031G2686' => 'pgr', 'PGR042G0809' => 'pgr', 'PGR142G0193' => 'pgr', 'PGSC0003DMG400011066' => 'stu', 'PGSC0003DMG400012041' => 'stu', 'PGSC0003DMG400013678' => 'stu', 'PGSC0003DMG400023477' => 'stu', 'PGSC0003DMG400025956' => 'stu', 'PGSC0003DMG401019151' => 'stu', 'Phvul.006G116400' => 'pvu', 'Phvul.007G097300' => 'pvu', 'Phvul.010G015000' => 'pvu', 'Phvul.010G083900' => 'pvu', 'Potri.001G117100' => 'ptr', 'Potri.002G147300' => 'ptr', 'Potri.003G115600' => 'ptr', 'Potri.006G087400' => 'ptr', 'Potri.010G226100' => 'ptr', 'Potri.014G069200' => 'ptr', 'Potri.014G104000' => 'ptr', 'Potri.016G100200' => 'ptr', 'Pp3c10_20450' => 'ppa', 'Pp3c1_42400' => 'ppa', 'Pp3c3_24390' => 'ppa', 'Pp3c3_2860' => 'ppa', 'PRCOL_00003193' => 'pco', 'Prupe.2G144500' => 'ppe', 'Prupe.2G195700' => 'ppe', 'Prupe.2G209800' => 'ppe', 'Prupe.5G080000' => 'ppe', 'Prupe.6G257900' => 'ppe', 'Psat3g001160' => 'psa', 'Psat6g181880' => 'psa', 'Psat7g233720' => 'psa', 'PSO063G7587' => 'pso', 'PSO339G2145' => 'pso', 'PSO339G3369' => 'pso', 'PSO478G2747' => 'pso', 'PSO513G0140' => 'pso', 'PSO782G1614' => 'pso', 'PSO782G4889' => 'pso', 'PSO782G5485' => 'pso', 'PSO801G0241' => 'pso', 'QL07p048854' => 'qlo', 'QL08p046745' => 'qlo', 'QL08p052606' => 'qlo', 'QL08p053414' => 'qlo', 'QL08p054868' => 'qlo', 'RcHm_v2.0_Chr1g0350251' => 'rch', 'RcHm_v2.0_Chr1g0360851' => 'rch', 'RcHm_v2.0_Chr1g0362791' => 'rch', 'RcHm_v2.0_Chr3g0466281' => 'rch', 'RcHm_v2.0_Chr7g0201481' => 'rch', 'Rhsim01G0148600' => 'rsi', 'Rhsim05G0194400' => 'rsi', 'Rhsim07G0000700' => 'rsi', 'Rhsim07G0000800' => 'rsi', 'Rhsim07G0027900' => 'rsi', 'Rhsim09G0149500' => 'rsi', 'RhsimUnG0186900' => 'rsi', 'Sabra01G0089900' => 'sbr', 'Sabra02G0114700' => 'sbr', 'Sabra02G0116300' => 'sbr', 'Sabra03G0080100' => 'sbr', 'Sabra08G0024300' => 'sbr', 'Sabra10G0174300' => 'sbr', 'Sabra14G0048900' => 'sbr', 'Sabra14G0076500' => 'sbr', 'SalBow5G2513' => 'sbo', 'Sc01g0002300' => 'sci', 'Sc01g0004450' => 'sci', 'Sc06g0001680' => 'sci', 'Sc23g0003580' => 'sci', 'Sed0000913' => 'sed', 'Sed0001655' => 'sed', 'Sed0007745' => 'sed', 'Sed0010951' => 'sed', 'Sed0017599' => 'sed', 'Sed0021405' => 'sed', 'Sed0022810' => 'sed', 'SEGI_07099' => 'sgi', 'SEGI_11931' => 'sgi', 'SEGI_13187' => 'sgi', 'SEGI_29958' => 'sgi', 'SEGI_36351' => 'sgi', 'SGA_v2.0_scaffold126G33770' => 'sas', 'SGA_v2.0_scaffold153G37003' => 'sas', 'SGA_v2.0_scaffold2G01359' => 'sas', 'SGA_v2.0_scaffold5G03064' => 'sas', 'SGA_v2.0_scaffold95G28903' => 'sas', 'SHI12701' => 'shi', 'SHI26410' => 'shi', 'SHI38997' => 'shi', 'SHI53759' => 'shi', 'SHI53886' => 'shi', 'SHI54714' => 'shi', 'SMO011G0041' => 'smo', 'SMO146G0251' => 'smo', 'SMO160G0004' => 'smo', 'SMO174G0057' => 'smo', 'SMO244G0089' => 'smo', 'SMO296G0011' => 'smo', 'Solyc01g091280.3' => 'sly', 'Solyc05g047610.3' => 'sly', 'Solyc05g047640.3' => 'sly', 'Solyc05g055630.3' => 'sly', 'Solyc10g018160.2' => 'sly', 'Solyc10g084820.2' => 'sly', 'Solyc10g086565.2' => 'sly', 'Sopen01g037030' => 'spe', 'Sopen05g027920' => 'spe', 'Sopen05g034070' => 'spe', 'Sopen10g007260' => 'spe', 'Sopen10g034260' => 'spe', 'Sopen10g035950' => 'spe', 'Sp3g07710' => 'spa', 'Sp4g27420' => 'spa', 'Sp5g02450' => 'spa', 'Sp6g01280' => 'spa', 'Sp6g38480' => 'spa', 'Sp7g20780' => 'spa', 'TAR374G1413' => 'tar', 'TAR623G1777' => 'tar', 'TAR629G2370' => 'tar', 'TAR633G1759' => 'tar', 'TAR636G3387' => 'tar', 'THA.LOC104802447' => 'tha', 'THA.LOC104813916' => 'tha', 'THA.LOC104816423' => 'tha', 'THA.LOC104817246' => 'tha', 'THA.LOC104825895' => 'tha', 'Thecc.01G335200' => 'tca', 'Thecc.01G377400' => 'tca', 'Thecc.03G262200' => 'tca', 'Thecc.05G036800' => 'tca', 'Thecc.10G080500' => 'tca', 'Thecc.10G080800' => 'tca', 'Thhalv10001560m.g' => 'esa', 'Thhalv10006120m.g' => 'esa', 'Thhalv10014375m.g' => 'esa', 'Thhalv10021264m.g' => 'esa', 'Thhalv10028856m.g' => 'esa', 'TPR.G1914' => 'tpr', 'TPR.G4757' => 'tpr', 'TPR.G5595' => 'tpr', 'TWI14G0952' => 'twi', 'TWI14G1307' => 'twi', 'TWI38G2143' => 'twi', 'TWI59G0826' => 'twi', 'TWI77G0527' => 'twi', 'TWI81G0150' => 'twi', 'unitig_21.g21018' => 'ugi', 'unitig_26.g9725' => 'ugi', 'unitig_744.g24653' => 'ugi', 'unitig_749.g13778' => 'ugi', 'unitig_899.g15035' => 'ugi', 'vmacro04296' => 'vma', 'vmacro04852' => 'vma', 'vmacro13404' => 'vma', 'vmacro20169' => 'vma', 'vmacro21014' => 'vma', 'VMungo0331G0237' => 'vmu', 'VMungo0331G0706' => 'vmu', 'VMungo0331G1361' => 'vmu', 'VMungo0331G1489' => 'vmu', 'VMungo0540G1037' => 'vmu', 'VMungo0720G2487' => 'vmu', 'VMungo0720G2721' => 'vmu', 'Zm00001eb086860' => 'zma', 'Zm00001eb104760' => 'zma', 'Zm00001eb148220' => 'zma', 'Zm00001eb259030' => 'zma', 'Zm00001eb289590' => 'zma', 'Zm00001eb420150' => 'zma' ) $gf_id = 'HOM05D000968' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000968' ) $data_identifier = 'HOM05D000968' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 19, 'bol' => (int) 9, 'bra' => (int) 12, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 5, 'ccan' => (int) 7, 'cde' => (int) 5, 'cfa' => (int) 8, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 4, 'dca' => (int) 5, 'din' => (int) 5, 'dzi' => (int) 12, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 25, 'fve' => (int) 5, 'gma' => (int) 9, 'ghi' => (int) 18, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 7, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 5, 'sun' => (int) 2, 'lal' => (int) 9, 'lja' => (int) 5, 'lonja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 9, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 2, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 3, 'stu' => (int) 6, 'pvu' => (int) 4, 'ptr' => (int) 8, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 3, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 1, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 5, 'sas' => (int) 5, 'shi' => (int) 6, 'smo' => (int) 6, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 3, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420150' $species_info = array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ) $local_species = 'bvu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000968', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p31690' => 'bna', 'A03p36040' => 'bna', 'A03p53730' => 'bna', 'A04p01410' => 'bna', 'A05p05420' => 'bna', 'A05p39630' => 'bna', 'A05p39640' => 'bna', 'A09p00970' => 'bna', 'A09p53060' => 'bna', 'A10p31890' => 'bna', 'Aa31LG10G15040' => 'aar', 'Aa31LG1G21090' => 'aar', 'Aa31LG1G26900' => 'aar', 'Aa31LG3G1820' => 'aar', 'Aa31LG5G1100' => 'aar', 'Aa31LG6G4740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2265' => 'aag', 'Actinidia07998' => 'ach', 'Actinidia11266' => 'ach', 'Actinidia12682' => 'ach', 'Actinidia26479' => 'ach', 'Actinidia31406' => 'ach', 'Actinidia32437' => 'ach', 'Actinidia38862' => 'ach', 'Ah.05g174230' => 'amhyb', 'Ah.05g179070' => 'amhyb', 'Ah.05g179090' => 'amhyb', 'Ah.12g059950' => 'amhyb', 'AL3G20480' => 'aly', 'AL4G44520' => 'aly', 'AL5G43110' => 'aly', 'AL6G13890' => 'aly', 'AL6G52620' => 'aly', 'AL7G30830' => 'aly', 'Aqoxy1G00899' => 'aox', 'Aqoxy5G04333' => 'aox', 'Aqoxy7G00641' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3IZ0NN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4EF6AW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W9P8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79GA3M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C43NQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFCU6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G95YVJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCHK29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LU1UG8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX91RN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGB4B1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8DA0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9H7JI' => 'arhy', 'AT3G09320' => 'ath', 'AT3G60800' => 'ath', 'AT4G00840' => 'ath', 'AT4G22750' => 'ath', 'AT5G04270' => 'ath', 'ATR0090G003' => 'atr', 'ATR0559G349' => 'atr', 'ATR0680G261' => 'atr', 'ATR0810G048' => 'atr', 'Atru.chr12.831' => 'acertr', 'Atru.chr5.303' => 'acertr', 'Atru.chr5.748' => 'acertr', 'Atru.chr8.1999' => 'acertr', 'Atru.chr9.1436' => 'acertr', 'AUR62004211' => 'cqu', 'AUR62004548' => 'cqu', 'AUR62013637' => 'cqu', 'AUR62022662' => 'cqu', 'AUR62025777' => 'cqu', 'AUR62042386' => 'cqu', 'BcaB01g02310' => 'bca', 'BcaB01g06062' => 'bca', 'BcaB02g08975' => 'bca', 'BcaB02g08980' => 'bca', 'BcaC01g04228' => 'bca', 'BcaC01g06830' => 'bca', 'BcaC02g10186' => 'bca', 'BcaC02g12214' => 'bca', 'BcaC04g24101' => 'bca', 'BcaC05g29520' => 'bca', 'BcaC05g29661' => 'bca', 'BcaC06g32130' => 'bca', 'BcaC06g32131' => 'bca', 'BcaC07g40601' => 'bca', 'BcaC07g42641' => 'bca', 'BcaNung01038' => 'bca', 'BcaNung01676' => 'bca', 'BcaNung02480' => 'bca', 'BcaNung07376' => 'bca', 'BolC3t16146H' => 'bol', 'BolC3t16637H' => 'bol', 'BolC4t22257H' => 'bol', 'BolC4t24728H' => 'bol', 'BolC5t34517H' => 'bol', 'BolC7t45703H' => 'bol', 'BolC8t51166H' => 'bol', 'BolC9t53038H' => 'bol', 'BolC9t60000H' => 'bol', 'BraA01t01345Z' => 'bra', 'BraA01t01346Z' => 'bra', 'BraA01t01348Z' => 'bra', 'BraA03t12347Z' => 'bra', 'BraA03t12775Z' => 'bra', 'BraA03t14439Z' => 'bra', 'BraA04t15860Z' => 'bra', 'BraA05t19511Z' => 'bra', 'BraA05t22746Z' => 'bra', 'BraA09t35767Z' => 'bra', 'BraA09t40732Z' => 'bra', 'BraA10t45233Z' => 'bra', 'C03p38720' => 'bna', 'C03p43680' => 'bna', 'C04p06350' => 'bna', 'C04p31800' => 'bna', 'C05p58680' => 'bna', 'C07p52110' => 'bna', 'C08p35760' => 'bna', 'C09p01050' => 'bna', 'C09p72600' => 'bna', 'CAN.G106.2' => 'can', 'CAN.G1482.1' => 'can', 'CAN.G324.12' => 'can', 'CAN.G388.20' => 'can', 'CAN.G412.7' => 'can', 'CAN.G694.32' => 'can', 'CAN.G92.12' => 'can', 'CANSAT11G2353' => 'cansat', 'CANSAT21G1398' => 'cansat', 'CANSAT56G2456' => 'cansat', 'CANSAT56G3031' => 'cansat', 'CANSAT56G4539' => 'cansat', 'CARHR083680' => 'chi', 'CARHR171190' => 'chi', 'CARHR209010' => 'chi', 'CARHR229680' => 'chi', 'CARHR249490' => 'chi', 'Carub.0003s0844' => 'cru', 'Carub.0005s2755' => 'cru', 'Carub.0006s0322' => 'cru', 'Carub.0006s3586' => 'cru', 'Carub.0007s1855' => 'cru', 'Ca_07808_v3' => 'car', 'Ca_09535_v3' => 'car', 'Ca_10548_v3' => 'car', 'Ca_19913_v3' => 'car', 'Ca_19916_v3' => 'car', 'Ca_19975_v3' => 'car', 'CBR_g22876' => 'cbr', 'CBR_g22879' => 'cbr', 'CBR_g38491' => 'cbr', 'CBR_g54185' => 'cbr', 'CBR_g54190' => 'cbr', 'Cc02_g11020' => 'ccan', 'Cc02_g23920' => 'ccan', 'Cc02_g39860' => 'ccan', 'Cc02_g39870' => 'ccan', 'Cc03_g06760' => 'ccan', 'Cc06_g02450' => 'ccan', 'Cc09_g09450' => 'ccan', 'CDE02G1959' => 'cde', 'CDE04G0600' => 'cde', 'CDE07G1996' => 'cde', 'CDE07G2078' => 'cde', 'CDE11G0611' => 'cde', 'Cfa001683' => 'cfa', 'Cfa001734' => 'cfa', 'Cfa001737' => 'cfa', 'Cfa003751' => 'cfa', 'Cfa012019' => 'cfa', 'Cfa017353' => 'cfa', 'Cfa017732' => 'cfa', 'Cfa022464' => 'cfa', 'Ciclev10012400m.g' => 'ccl', 'Ciclev10021242m.g' => 'ccl', 'Ciclev10021302m.g' => 'ccl', 'Ciclev10021463m.g' => 'ccl', 'Ciclev10032359m.g' => 'ccl', 'CiPaw.01G081000' => 'cil', 'CiPaw.01G262500' => 'cil', 'CiPaw.01G269800' => 'cil', 'CiPaw.02G168400' => 'cil', 'CiPaw.05G119500' => 'cil', 'CiPaw.11G147300' => 'cil', 'ClCG01G003630' => 'cla', 'ClCG05G000510' => 'cla', 'ClCG05G002300' => 'cla', 'ClCG08G007650' => 'cla', 'ClCG10G021250' => 'cla', 'COL.COLO4_06218' => 'col', 'COL.COLO4_12538' => 'col', 'COL.COLO4_14775' => 'col', 'COL.COLO4_23875' => 'col', 'Cpa.g.sc141.16' => 'cpa', 'Cpa.g.sc169.16' => 'cpa', 'Cpa.g.sc244.4' => 'cpa', 'Cpa.g.sc244.5' => 'cpa', 'Cpa.g.sc29.87' => 'cpa', 'Cpa.g.sc53.115' => 'cpa', 'Cre03.g207502' => 'cre', 'Cre06.g277000' => 'cre', 'Cre09.g394050' => 'cre', 'CsaV3_3G007680' => 'csa', 'CsaV3_3G009710' => 'csa', 'CsaV3_3G034790' => 'csa', 'CsaV3_5G003750' => 'csa', 'CsaV3_6G036620' => 'csa', 'CSS0002288' => 'camsi', 'CSS0011250' => 'camsi', 'CSS0021619' => 'camsi', 'CSS0046701' => 'camsi', 'DCAR_006420' => 'dca', 'DCAR_006865' => 'dca', 'DCAR_008558' => 'dca', 'DCAR_028754' => 'dca', 'DCAR_028755' => 'dca', 'Dinv31218' => 'din', 'Dinv32371' => 'din', 'Dinv34250' => 'din', 'Dinv37156' => 'din', 'Dinv43704' => 'din', 'Duzib093G1811' => 'dzi', 'Duzib106G1622' => 'dzi', 'Duzib114G0504' => 'dzi', 'Duzib128G0338' => 'dzi', 'Duzib128G1577' => 'dzi', 'Duzib133G0104' => 'dzi', 'Duzib133G1080' => 'dzi', 'Duzib138G0324' => 'dzi', 'Duzib138G0394' => 'dzi', 'Duzib205G0122' => 'dzi', 'Duzib268G1020' => 'dzi', 'Duzib268G1359' => 'dzi', 'ECA232G3929' => 'eca', 'ECA236G2210' => 'eca', 'ECA236G2287' => 'eca', 'ECA240G4568' => 'eca', 'ECA247G0894' => 'eca', 'EL10Ac1g00200' => 'bvu', 'EL10Ac1g00886' => 'bvu', 'EL10As1g23091' => 'bvu', 'EL10As1g23092' => 'bvu', 'Eucgr.A01284' => 'egr', 'Eucgr.A01285' => 'egr', 'Eucgr.D02456' => 'egr', 'Eucgr.E00018' => 'egr', 'Eucgr.E01439' => 'egr', 'Eucgr.G02859' => 'egr', 'FAN01G0168' => 'fan', 'FAN01G0453' => 'fan', 'FAN01G2761' => 'fan', 'FAN02G1239' => 'fan', 'FAN03G0645' => 'fan', 'FAN03G2707' => 'fan', 'FAN03G2978' => 'fan', 'FAN04G0227' => 'fan', 'FAN06G0091' => 'fan', 'FAN06G1418' => 'fan', 'FAN06G1512' => 'fan', 'FAN06G1986' => 'fan', 'FAN06G2905' => 'fan', 'FAN06G4325' => 'fan', 'FAN08G0033' => 'fan', 'FAN09G0642' => 'fan', 'FAN10G1763' => 'fan', 'FAN10G2026' => 'fan', 'FAN10G2513' => 'fan', 'FAN10G3402' => 'fan', 'FAN10G3564' => 'fan', 'FAN10G3987' => 'fan', 'FAN13G1490' => 'fan', 'FAN14G5857' => 'fan', 'FAN18G1188' => 'fan', 'FvH4_5g00750' => 'fve', 'FvH4_6g13410' => 'fve', 'FvH4_7g11740' => 'fve', 'FvH4_7g17410' => 'fve', 'FvH4_7g18860' => 'fve', 'Glyma.01G099100' => 'gma', 'Glyma.01G142300' => 'gma', 'Glyma.03G025500' => 'gma', 'Glyma.03G069700' => 'gma', 'Glyma.03G260000' => 'gma', 'Glyma.09G269800' => 'gma', 'Glyma.10G208700' => 'gma', 'Glyma.18G220400' => 'gma', 'Glyma.20G182000' => 'gma', 'Gohir.A01G221726' => 'ghi', 'Gohir.A07G134600' => 'ghi', 'Gohir.A07G146000' => 'ghi', 'Gohir.A08G173900' => 'ghi', 'Gohir.A09G194900' => 'ghi', 'Gohir.A10G204100' => 'ghi', 'Gohir.A11G080600' => 'ghi', 'Gohir.A11G327500' => 'ghi', 'Gohir.A12G101800' => 'ghi', 'Gohir.D01G211200' => 'ghi', 'Gohir.D07G139200' => 'ghi', 'Gohir.D07G152100' => 'ghi', 'Gohir.D08G192600' => 'ghi', 'Gohir.D09G189200' => 'ghi', 'Gohir.D10G212000' => 'ghi', 'Gohir.D11G085200' => 'ghi', 'Gohir.D11G346400' => 'ghi', 'Gohir.D12G104800' => 'ghi', 'Gorai.001G151300' => 'gra', 'Gorai.001G174100' => 'gra', 'Gorai.002G257000' => 'gra', 'Gorai.004G202600' => 'gra', 'Gorai.007G090900' => 'gra', 'Gorai.007G376700' => 'gra', 'Gorai.008G114100' => 'gra', 'Gorai.011G237900' => 'gra', 'GSVIVG01005450001' => 'vvi', 'GSVIVG01016232001' => 'vvi', 'GSVIVG01026157001' => 'vvi', 'GSVIVG01027419001' => 'vvi', 'GSVIVG01027631001' => 'vvi', 'GSVIVG01034143001' => 'vvi', 'HanXRQChr03g0093921' => 'han', 'HanXRQChr04g0120001' => 'han', 'HanXRQChr04g0122561' => 'han', 'HanXRQChr09g0246851' => 'han', 'HanXRQChr10g0293311' => 'han', 'HanXRQChr13g0425231' => 'han', 'HanXRQChr16g0532571' => 'han', 'Haze_09050' => 'cav', 'Haze_15715' => 'cav', 'Haze_15716' => 'cav', 'Haze_16803' => 'cav', 'Haze_16850' => 'cav', 'Hma1.2p1_0301F.1_g118655' => 'hma', 'Hma1.2p1_0309F.1_g120590' => 'hma', 'Hma1.2p1_0936F.1_g238900' => 'hma', 'Hma1.2p1_3552F.1_g336740' => 'hma', 'HPP92_003520' => 'vpl', 'HPP92_006628' => 'vpl', 'HPP92_006645' => 'vpl', 'HPP92_014669' => 'vpl', 'HPP92_015077' => 'vpl', 'Hund16742' => 'sun', 'Hund17022' => 'sun', 'Lalb_Chr02g0152131' => 'lal', 'Lalb_Chr05g0225371' => 'lal', 'Lalb_Chr07g0189841' => 'lal', 'Lalb_Chr07g0192961' => 'lal', 'Lalb_Chr12g0208221' => 'lal', 'Lalb_Chr13g0291211' => 'lal', 'Lalb_Chr13g0291781' => 'lal', 'Lalb_Chr18g0044651' => 'lal', 'Lalb_Chr21g0313731' => 'lal', 'Lj1g0022533' => 'lja', 'Lj2A18T50' => 'lonja', 'Lj2A92G93' => 'lonja', 'Lj3A965T73' => 'lonja', 'Lj3g0000673' => 'lja', 'Lj3g0002666' => 'lja', 'Lj4g0016985' => 'lja', 'Lj5g0003625' => 'lja', 'Lj7A529G36' => 'lonja', 'Lj9A569T49' => 'lonja', 'Lj9A604T63' => 'lonja', 'Lsat_1_v5_gn_3_132060' => 'lsa', 'Lsat_1_v5_gn_4_68941' => 'lsa', 'Lsat_1_v5_gn_5_95580' => 'lsa', 'Lsat_1_v5_gn_7_161' => 'lsa', 'Lsat_1_v5_gn_7_7041' => 'lsa', 'Lsat_1_v5_gn_9_33481' => 'lsa', 'Lsat_1_v5_gn_9_68260' => 'lsa', 'Manes.01G073100' => 'mes', 'Manes.01G266300' => 'mes', 'Manes.02G033300' => 'mes', 'Manes.05G017900' => 'mes', 'Manes.05G046100' => 'mes', 'Manes.08G080900' => 'mes', 'Manes.10G049400' => 'mes', 'Mapoly0009s0186' => 'mpo', 'Mapoly0036s0118' => 'mpo', 'Mapoly0101s0046' => 'mpo', 'MBI04_g30218_MAGBIO' => 'mbi', 'MBI04_g35564_MAGBIO' => 'mbi', 'MBI12_g34011_MAGBIO' => 'mbi', 'MBI14_g04655_MAGBIO' => 'mbi', 'MCO07G653' => 'mco', 'MCO10G173' => 'mco', 'MD01G1087100' => 'mdo', 'MD01G1104200' => 'mdo', 'MD02G1205100' => 'mdo', 'MD04G1079200' => 'mdo', 'MD04G1131400' => 'mdo', 'MD07G1121600' => 'mdo', 'MD07G1157300' => 'mdo', 'MD07G1171000' => 'mdo', 'MD12G1144500' => 'mdo', 'Medtr1g094610' => 'mtr', 'Medtr4g021795' => 'mtr', 'Medtr4g023760' => 'mtr', 'Medtr7g118050' => 'mtr', 'MELO3C005582.2' => 'cme', 'MELO3C005989.2' => 'cme', 'MELO3C006192.2' => 'cme', 'MELO3C009248.2' => 'cme', 'MELO3C019817.2' => 'cme', 'Migut.B01625' => 'egut', 'Migut.B01915' => 'egut', 'Migut.F01721' => 'egut', 'Migut.J00314' => 'egut', 'MSTRG.20742' => 'ama', 'MSTRG.8134' => 'ama', 'Nitab4.5_0000096g0010' => 'nta', 'Nitab4.5_0000202g0030' => 'nta', 'Nitab4.5_0000216g0370' => 'nta', 'Nitab4.5_0000457g0230' => 'nta', 'Nitab4.5_0001702g0170' => 'nta', 'Nitab4.5_0003607g0010' => 'nta', 'Nitab4.5_0004917g0020' => 'nta', 'Nitab4.5_0007059g0010' => 'nta', 'Nitab4.5_0007184g0010' => 'nta', 'Nitab4.5_0007346g0020' => 'nta', 'Nn1g00410' => 'nnu', 'Nn1g01252' => 'nnu', 'Nn2g11168' => 'nnu', 'Nn2g13403' => 'nnu', 'Nn2g13760' => 'nnu', 'Nn4g26380' => 'nnu', 'Oeu000806.2' => 'oeu', 'Oeu005788.1' => 'oeu', 'Oeu006900.3' => 'oeu', 'Oeu007797.1' => 'oeu', 'Oeu011932.1' => 'oeu', 'Oeu022739.1' => 'oeu', 'Oeu037918.1' => 'oeu', 'Oeu055490.2' => 'oeu', 'Os01g0844400' => 'osa', 'Os02g0819100' => 'osa', 'Os03g0804300' => 'osa', 'Os05g0458000' => 'osa', 'Os07g0467800' => 'osa', 'Os12g0602200' => 'osa', 'Peaxi162Scf00013g03444' => 'pax', 'Peaxi162Scf00094g01120' => 'pax', 'Peaxi162Scf00191g01211' => 'pax', 'Peaxi162Scf00238g01110' => 'pax', 'Peaxi162Scf00330g00719' => 'pax', 'Peaxi162Scf00627g00018' => 'pax', 'PGR031G2686' => 'pgr', 'PGR042G0809' => 'pgr', 'PGR142G0193' => 'pgr', 'PGSC0003DMG400011066' => 'stu', 'PGSC0003DMG400012041' => 'stu', 'PGSC0003DMG400013678' => 'stu', 'PGSC0003DMG400023477' => 'stu', 'PGSC0003DMG400025956' => 'stu', 'PGSC0003DMG401019151' => 'stu', 'Phvul.006G116400' => 'pvu', 'Phvul.007G097300' => 'pvu', 'Phvul.010G015000' => 'pvu', 'Phvul.010G083900' => 'pvu', 'Potri.001G117100' => 'ptr', 'Potri.002G147300' => 'ptr', 'Potri.003G115600' => 'ptr', 'Potri.006G087400' => 'ptr', 'Potri.010G226100' => 'ptr', 'Potri.014G069200' => 'ptr', 'Potri.014G104000' => 'ptr', 'Potri.016G100200' => 'ptr', 'Pp3c10_20450' => 'ppa', 'Pp3c1_42400' => 'ppa', 'Pp3c3_24390' => 'ppa', 'Pp3c3_2860' => 'ppa', 'PRCOL_00003193' => 'pco', 'Prupe.2G144500' => 'ppe', 'Prupe.2G195700' => 'ppe', 'Prupe.2G209800' => 'ppe', 'Prupe.5G080000' => 'ppe', 'Prupe.6G257900' => 'ppe', 'Psat3g001160' => 'psa', 'Psat6g181880' => 'psa', 'Psat7g233720' => 'psa', 'PSO063G7587' => 'pso', 'PSO339G2145' => 'pso', 'PSO339G3369' => 'pso', 'PSO478G2747' => 'pso', 'PSO513G0140' => 'pso', 'PSO782G1614' => 'pso', 'PSO782G4889' => 'pso', 'PSO782G5485' => 'pso', 'PSO801G0241' => 'pso', 'QL07p048854' => 'qlo', 'QL08p046745' => 'qlo', 'QL08p052606' => 'qlo', 'QL08p053414' => 'qlo', 'QL08p054868' => 'qlo', 'RcHm_v2.0_Chr1g0350251' => 'rch', 'RcHm_v2.0_Chr1g0360851' => 'rch', 'RcHm_v2.0_Chr1g0362791' => 'rch', 'RcHm_v2.0_Chr3g0466281' => 'rch', 'RcHm_v2.0_Chr7g0201481' => 'rch', 'Rhsim01G0148600' => 'rsi', 'Rhsim05G0194400' => 'rsi', 'Rhsim07G0000700' => 'rsi', 'Rhsim07G0000800' => 'rsi', 'Rhsim07G0027900' => 'rsi', 'Rhsim09G0149500' => 'rsi', 'RhsimUnG0186900' => 'rsi', 'Sabra01G0089900' => 'sbr', 'Sabra02G0114700' => 'sbr', 'Sabra02G0116300' => 'sbr', 'Sabra03G0080100' => 'sbr', 'Sabra08G0024300' => 'sbr', 'Sabra10G0174300' => 'sbr', 'Sabra14G0048900' => 'sbr', 'Sabra14G0076500' => 'sbr', 'SalBow5G2513' => 'sbo', 'Sc01g0002300' => 'sci', 'Sc01g0004450' => 'sci', 'Sc06g0001680' => 'sci', 'Sc23g0003580' => 'sci', 'Sed0000913' => 'sed', 'Sed0001655' => 'sed', 'Sed0007745' => 'sed', 'Sed0010951' => 'sed', 'Sed0017599' => 'sed', 'Sed0021405' => 'sed', 'Sed0022810' => 'sed', 'SEGI_07099' => 'sgi', 'SEGI_11931' => 'sgi', 'SEGI_13187' => 'sgi', 'SEGI_29958' => 'sgi', 'SEGI_36351' => 'sgi', 'SGA_v2.0_scaffold126G33770' => 'sas', 'SGA_v2.0_scaffold153G37003' => 'sas', 'SGA_v2.0_scaffold2G01359' => 'sas', 'SGA_v2.0_scaffold5G03064' => 'sas', 'SGA_v2.0_scaffold95G28903' => 'sas', 'SHI12701' => 'shi', 'SHI26410' => 'shi', 'SHI38997' => 'shi', 'SHI53759' => 'shi', 'SHI53886' => 'shi', 'SHI54714' => 'shi', 'SMO011G0041' => 'smo', 'SMO146G0251' => 'smo', 'SMO160G0004' => 'smo', 'SMO174G0057' => 'smo', 'SMO244G0089' => 'smo', 'SMO296G0011' => 'smo', 'Solyc01g091280.3' => 'sly', 'Solyc05g047610.3' => 'sly', 'Solyc05g047640.3' => 'sly', 'Solyc05g055630.3' => 'sly', 'Solyc10g018160.2' => 'sly', 'Solyc10g084820.2' => 'sly', 'Solyc10g086565.2' => 'sly', 'Sopen01g037030' => 'spe', 'Sopen05g027920' => 'spe', 'Sopen05g034070' => 'spe', 'Sopen10g007260' => 'spe', 'Sopen10g034260' => 'spe', 'Sopen10g035950' => 'spe', 'Sp3g07710' => 'spa', 'Sp4g27420' => 'spa', 'Sp5g02450' => 'spa', 'Sp6g01280' => 'spa', 'Sp6g38480' => 'spa', 'Sp7g20780' => 'spa', 'TAR374G1413' => 'tar', 'TAR623G1777' => 'tar', 'TAR629G2370' => 'tar', 'TAR633G1759' => 'tar', 'TAR636G3387' => 'tar', 'THA.LOC104802447' => 'tha', 'THA.LOC104813916' => 'tha', 'THA.LOC104816423' => 'tha', 'THA.LOC104817246' => 'tha', 'THA.LOC104825895' => 'tha', 'Thecc.01G335200' => 'tca', 'Thecc.01G377400' => 'tca', 'Thecc.03G262200' => 'tca', 'Thecc.05G036800' => 'tca', 'Thecc.10G080500' => 'tca', 'Thecc.10G080800' => 'tca', 'Thhalv10001560m.g' => 'esa', 'Thhalv10006120m.g' => 'esa', 'Thhalv10014375m.g' => 'esa', 'Thhalv10021264m.g' => 'esa', 'Thhalv10028856m.g' => 'esa', 'TPR.G1914' => 'tpr', 'TPR.G4757' => 'tpr', 'TPR.G5595' => 'tpr', 'TWI14G0952' => 'twi', 'TWI14G1307' => 'twi', 'TWI38G2143' => 'twi', 'TWI59G0826' => 'twi', 'TWI77G0527' => 'twi', 'TWI81G0150' => 'twi', 'unitig_21.g21018' => 'ugi', 'unitig_26.g9725' => 'ugi', 'unitig_744.g24653' => 'ugi', 'unitig_749.g13778' => 'ugi', 'unitig_899.g15035' => 'ugi', 'vmacro04296' => 'vma', 'vmacro04852' => 'vma', 'vmacro13404' => 'vma', 'vmacro20169' => 'vma', 'vmacro21014' => 'vma', 'VMungo0331G0237' => 'vmu', 'VMungo0331G0706' => 'vmu', 'VMungo0331G1361' => 'vmu', 'VMungo0331G1489' => 'vmu', 'VMungo0540G1037' => 'vmu', 'VMungo0720G2487' => 'vmu', 'VMungo0720G2721' => 'vmu', 'Zm00001eb086860' => 'zma', 'Zm00001eb104760' => 'zma', 'Zm00001eb148220' => 'zma', 'Zm00001eb259030' => 'zma', 'Zm00001eb289590' => 'zma', 'Zm00001eb420150' => 'zma' ), 'gf_id' => 'HOM05D000968', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000968' ), 'data_identifier' => 'HOM05D000968', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000968', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p31690' => 'bna', 'A03p36040' => 'bna', 'A03p53730' => 'bna', 'A04p01410' => 'bna', 'A05p05420' => 'bna', 'A05p39630' => 'bna', 'A05p39640' => 'bna', 'A09p00970' => 'bna', 'A09p53060' => 'bna', 'A10p31890' => 'bna', 'Aa31LG10G15040' => 'aar', 'Aa31LG1G21090' => 'aar', 'Aa31LG1G26900' => 'aar', 'Aa31LG3G1820' => 'aar', 'Aa31LG5G1100' => 'aar', 'Aa31LG6G4740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2265' => 'aag', 'Actinidia07998' => 'ach', 'Actinidia11266' => 'ach', 'Actinidia12682' => 'ach', 'Actinidia26479' => 'ach', 'Actinidia31406' => 'ach', 'Actinidia32437' => 'ach', 'Actinidia38862' => 'ach', 'Ah.05g174230' => 'amhyb', 'Ah.05g179070' => 'amhyb', 'Ah.05g179090' => 'amhyb', 'Ah.12g059950' => 'amhyb', 'AL3G20480' => 'aly', 'AL4G44520' => 'aly', 'AL5G43110' => 'aly', 'AL6G13890' => 'aly', 'AL6G52620' => 'aly', 'AL7G30830' => 'aly', 'Aqoxy1G00899' => 'aox', 'Aqoxy5G04333' => 'aox', 'Aqoxy7G00641' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3IZ0NN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4EF6AW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W9P8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79GA3M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C43NQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFCU6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G95YVJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCHK29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LU1UG8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX91RN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGB4B1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8DA0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9H7JI' => 'arhy', 'AT3G09320' => 'ath', 'AT3G60800' => 'ath', 'AT4G00840' => 'ath', 'AT4G22750' => 'ath', 'AT5G04270' => 'ath', 'ATR0090G003' => 'atr', 'ATR0559G349' => 'atr', 'ATR0680G261' => 'atr', 'ATR0810G048' => 'atr', 'Atru.chr12.831' => 'acertr', 'Atru.chr5.303' => 'acertr', 'Atru.chr5.748' => 'acertr', 'Atru.chr8.1999' => 'acertr', 'Atru.chr9.1436' => 'acertr', 'AUR62004211' => 'cqu', 'AUR62004548' => 'cqu', 'AUR62013637' => 'cqu', 'AUR62022662' => 'cqu', 'AUR62025777' => 'cqu', 'AUR62042386' => 'cqu', 'BcaB01g02310' => 'bca', 'BcaB01g06062' => 'bca', 'BcaB02g08975' => 'bca', 'BcaB02g08980' => 'bca', 'BcaC01g04228' => 'bca', 'BcaC01g06830' => 'bca', 'BcaC02g10186' => 'bca', 'BcaC02g12214' => 'bca', 'BcaC04g24101' => 'bca', 'BcaC05g29520' => 'bca', 'BcaC05g29661' => 'bca', 'BcaC06g32130' => 'bca', 'BcaC06g32131' => 'bca', 'BcaC07g40601' => 'bca', 'BcaC07g42641' => 'bca', 'BcaNung01038' => 'bca', 'BcaNung01676' => 'bca', 'BcaNung02480' => 'bca', 'BcaNung07376' => 'bca', 'BolC3t16146H' => 'bol', 'BolC3t16637H' => 'bol', 'BolC4t22257H' => 'bol', 'BolC4t24728H' => 'bol', 'BolC5t34517H' => 'bol', 'BolC7t45703H' => 'bol', 'BolC8t51166H' => 'bol', 'BolC9t53038H' => 'bol', 'BolC9t60000H' => 'bol', 'BraA01t01345Z' => 'bra', 'BraA01t01346Z' => 'bra', 'BraA01t01348Z' => 'bra', 'BraA03t12347Z' => 'bra', 'BraA03t12775Z' => 'bra', 'BraA03t14439Z' => 'bra', 'BraA04t15860Z' => 'bra', 'BraA05t19511Z' => 'bra', 'BraA05t22746Z' => 'bra', 'BraA09t35767Z' => 'bra', 'BraA09t40732Z' => 'bra', 'BraA10t45233Z' => 'bra', 'C03p38720' => 'bna', 'C03p43680' => 'bna', 'C04p06350' => 'bna', 'C04p31800' => 'bna', 'C05p58680' => 'bna', 'C07p52110' => 'bna', 'C08p35760' => 'bna', 'C09p01050' => 'bna', 'C09p72600' => 'bna', 'CAN.G106.2' => 'can', 'CAN.G1482.1' => 'can', 'CAN.G324.12' => 'can', 'CAN.G388.20' => 'can', 'CAN.G412.7' => 'can', 'CAN.G694.32' => 'can', 'CAN.G92.12' => 'can', 'CANSAT11G2353' => 'cansat', 'CANSAT21G1398' => 'cansat', 'CANSAT56G2456' => 'cansat', 'CANSAT56G3031' => 'cansat', 'CANSAT56G4539' => 'cansat', 'CARHR083680' => 'chi', 'CARHR171190' => 'chi', 'CARHR209010' => 'chi', 'CARHR229680' => 'chi', 'CARHR249490' => 'chi', 'Carub.0003s0844' => 'cru', 'Carub.0005s2755' => 'cru', 'Carub.0006s0322' => 'cru', 'Carub.0006s3586' => 'cru', 'Carub.0007s1855' => 'cru', 'Ca_07808_v3' => 'car', 'Ca_09535_v3' => 'car', 'Ca_10548_v3' => 'car', 'Ca_19913_v3' => 'car', 'Ca_19916_v3' => 'car', 'Ca_19975_v3' => 'car', 'CBR_g22876' => 'cbr', 'CBR_g22879' => 'cbr', 'CBR_g38491' => 'cbr', 'CBR_g54185' => 'cbr', 'CBR_g54190' => 'cbr', 'Cc02_g11020' => 'ccan', 'Cc02_g23920' => 'ccan', 'Cc02_g39860' => 'ccan', 'Cc02_g39870' => 'ccan', 'Cc03_g06760' => 'ccan', 'Cc06_g02450' => 'ccan', 'Cc09_g09450' => 'ccan', 'CDE02G1959' => 'cde', 'CDE04G0600' => 'cde', 'CDE07G1996' => 'cde', 'CDE07G2078' => 'cde', 'CDE11G0611' => 'cde', 'Cfa001683' => 'cfa', 'Cfa001734' => 'cfa', 'Cfa001737' => 'cfa', 'Cfa003751' => 'cfa', 'Cfa012019' => 'cfa', 'Cfa017353' => 'cfa', 'Cfa017732' => 'cfa', 'Cfa022464' => 'cfa', 'Ciclev10012400m.g' => 'ccl', 'Ciclev10021242m.g' => 'ccl', 'Ciclev10021302m.g' => 'ccl', 'Ciclev10021463m.g' => 'ccl', 'Ciclev10032359m.g' => 'ccl', 'CiPaw.01G081000' => 'cil', 'CiPaw.01G262500' => 'cil', 'CiPaw.01G269800' => 'cil', 'CiPaw.02G168400' => 'cil', 'CiPaw.05G119500' => 'cil', 'CiPaw.11G147300' => 'cil', 'ClCG01G003630' => 'cla', 'ClCG05G000510' => 'cla', 'ClCG05G002300' => 'cla', 'ClCG08G007650' => 'cla', 'ClCG10G021250' => 'cla', 'COL.COLO4_06218' => 'col', 'COL.COLO4_12538' => 'col', 'COL.COLO4_14775' => 'col', 'COL.COLO4_23875' => 'col', 'Cpa.g.sc141.16' => 'cpa', 'Cpa.g.sc169.16' => 'cpa', 'Cpa.g.sc244.4' => 'cpa', 'Cpa.g.sc244.5' => 'cpa', 'Cpa.g.sc29.87' => 'cpa', 'Cpa.g.sc53.115' => 'cpa', 'Cre03.g207502' => 'cre', 'Cre06.g277000' => 'cre', 'Cre09.g394050' => 'cre', 'CsaV3_3G007680' => 'csa', 'CsaV3_3G009710' => 'csa', 'CsaV3_3G034790' => 'csa', 'CsaV3_5G003750' => 'csa', 'CsaV3_6G036620' => 'csa', 'CSS0002288' => 'camsi', 'CSS0011250' => 'camsi', 'CSS0021619' => 'camsi', 'CSS0046701' => 'camsi', 'DCAR_006420' => 'dca', 'DCAR_006865' => 'dca', 'DCAR_008558' => 'dca', 'DCAR_028754' => 'dca', 'DCAR_028755' => 'dca', 'Dinv31218' => 'din', 'Dinv32371' => 'din', 'Dinv34250' => 'din', 'Dinv37156' => 'din', 'Dinv43704' => 'din', 'Duzib093G1811' => 'dzi', 'Duzib106G1622' => 'dzi', 'Duzib114G0504' => 'dzi', 'Duzib128G0338' => 'dzi', 'Duzib128G1577' => 'dzi', 'Duzib133G0104' => 'dzi', 'Duzib133G1080' => 'dzi', 'Duzib138G0324' => 'dzi', 'Duzib138G0394' => 'dzi', 'Duzib205G0122' => 'dzi', 'Duzib268G1020' => 'dzi', 'Duzib268G1359' => 'dzi', 'ECA232G3929' => 'eca', 'ECA236G2210' => 'eca', 'ECA236G2287' => 'eca', 'ECA240G4568' => 'eca', 'ECA247G0894' => 'eca', 'EL10Ac1g00200' => 'bvu', 'EL10Ac1g00886' => 'bvu', 'EL10As1g23091' => 'bvu', 'EL10As1g23092' => 'bvu', 'Eucgr.A01284' => 'egr', 'Eucgr.A01285' => 'egr', 'Eucgr.D02456' => 'egr', 'Eucgr.E00018' => 'egr', 'Eucgr.E01439' => 'egr', 'Eucgr.G02859' => 'egr', 'FAN01G0168' => 'fan', 'FAN01G0453' => 'fan', 'FAN01G2761' => 'fan', 'FAN02G1239' => 'fan', 'FAN03G0645' => 'fan', 'FAN03G2707' => 'fan', 'FAN03G2978' => 'fan', 'FAN04G0227' => 'fan', 'FAN06G0091' => 'fan', 'FAN06G1418' => 'fan', 'FAN06G1512' => 'fan', 'FAN06G1986' => 'fan', 'FAN06G2905' => 'fan', 'FAN06G4325' => 'fan', 'FAN08G0033' => 'fan', 'FAN09G0642' => 'fan', 'FAN10G1763' => 'fan', 'FAN10G2026' => 'fan', 'FAN10G2513' => 'fan', 'FAN10G3402' => 'fan', 'FAN10G3564' => 'fan', 'FAN10G3987' => 'fan', 'FAN13G1490' => 'fan', 'FAN14G5857' => 'fan', 'FAN18G1188' => 'fan', 'FvH4_5g00750' => 'fve', 'FvH4_6g13410' => 'fve', 'FvH4_7g11740' => 'fve', 'FvH4_7g17410' => 'fve', 'FvH4_7g18860' => 'fve', 'Glyma.01G099100' => 'gma', 'Glyma.01G142300' => 'gma', 'Glyma.03G025500' => 'gma', 'Glyma.03G069700' => 'gma', 'Glyma.03G260000' => 'gma', 'Glyma.09G269800' => 'gma', 'Glyma.10G208700' => 'gma', 'Glyma.18G220400' => 'gma', 'Glyma.20G182000' => 'gma', 'Gohir.A01G221726' => 'ghi', 'Gohir.A07G134600' => 'ghi', 'Gohir.A07G146000' => 'ghi', 'Gohir.A08G173900' => 'ghi', 'Gohir.A09G194900' => 'ghi', 'Gohir.A10G204100' => 'ghi', 'Gohir.A11G080600' => 'ghi', 'Gohir.A11G327500' => 'ghi', 'Gohir.A12G101800' => 'ghi', 'Gohir.D01G211200' => 'ghi', 'Gohir.D07G139200' => 'ghi', 'Gohir.D07G152100' => 'ghi', 'Gohir.D08G192600' => 'ghi', 'Gohir.D09G189200' => 'ghi', 'Gohir.D10G212000' => 'ghi', 'Gohir.D11G085200' => 'ghi', 'Gohir.D11G346400' => 'ghi', 'Gohir.D12G104800' => 'ghi', 'Gorai.001G151300' => 'gra', 'Gorai.001G174100' => 'gra', 'Gorai.002G257000' => 'gra', 'Gorai.004G202600' => 'gra', 'Gorai.007G090900' => 'gra', 'Gorai.007G376700' => 'gra', 'Gorai.008G114100' => 'gra', 'Gorai.011G237900' => 'gra', 'GSVIVG01005450001' => 'vvi', 'GSVIVG01016232001' => 'vvi', 'GSVIVG01026157001' => 'vvi', 'GSVIVG01027419001' => 'vvi', 'GSVIVG01027631001' => 'vvi', 'GSVIVG01034143001' => 'vvi', 'HanXRQChr03g0093921' => 'han', 'HanXRQChr04g0120001' => 'han', 'HanXRQChr04g0122561' => 'han', 'HanXRQChr09g0246851' => 'han', 'HanXRQChr10g0293311' => 'han', 'HanXRQChr13g0425231' => 'han', 'HanXRQChr16g0532571' => 'han', 'Haze_09050' => 'cav', 'Haze_15715' => 'cav', 'Haze_15716' => 'cav', 'Haze_16803' => 'cav', 'Haze_16850' => 'cav', 'Hma1.2p1_0301F.1_g118655' => 'hma', 'Hma1.2p1_0309F.1_g120590' => 'hma', 'Hma1.2p1_0936F.1_g238900' => 'hma', 'Hma1.2p1_3552F.1_g336740' => 'hma', 'HPP92_003520' => 'vpl', 'HPP92_006628' => 'vpl', 'HPP92_006645' => 'vpl', 'HPP92_014669' => 'vpl', 'HPP92_015077' => 'vpl', 'Hund16742' => 'sun', 'Hund17022' => 'sun', 'Lalb_Chr02g0152131' => 'lal', 'Lalb_Chr05g0225371' => 'lal', 'Lalb_Chr07g0189841' => 'lal', 'Lalb_Chr07g0192961' => 'lal', 'Lalb_Chr12g0208221' => 'lal', 'Lalb_Chr13g0291211' => 'lal', 'Lalb_Chr13g0291781' => 'lal', 'Lalb_Chr18g0044651' => 'lal', 'Lalb_Chr21g0313731' => 'lal', 'Lj1g0022533' => 'lja', 'Lj2A18T50' => 'lonja', 'Lj2A92G93' => 'lonja', 'Lj3A965T73' => 'lonja', 'Lj3g0000673' => 'lja', 'Lj3g0002666' => 'lja', 'Lj4g0016985' => 'lja', 'Lj5g0003625' => 'lja', 'Lj7A529G36' => 'lonja', 'Lj9A569T49' => 'lonja', 'Lj9A604T63' => 'lonja', 'Lsat_1_v5_gn_3_132060' => 'lsa', 'Lsat_1_v5_gn_4_68941' => 'lsa', 'Lsat_1_v5_gn_5_95580' => 'lsa', 'Lsat_1_v5_gn_7_161' => 'lsa', 'Lsat_1_v5_gn_7_7041' => 'lsa', 'Lsat_1_v5_gn_9_33481' => 'lsa', 'Lsat_1_v5_gn_9_68260' => 'lsa', 'Manes.01G073100' => 'mes', 'Manes.01G266300' => 'mes', 'Manes.02G033300' => 'mes', 'Manes.05G017900' => 'mes', 'Manes.05G046100' => 'mes', 'Manes.08G080900' => 'mes', 'Manes.10G049400' => 'mes', 'Mapoly0009s0186' => 'mpo', 'Mapoly0036s0118' => 'mpo', 'Mapoly0101s0046' => 'mpo', 'MBI04_g30218_MAGBIO' => 'mbi', 'MBI04_g35564_MAGBIO' => 'mbi', 'MBI12_g34011_MAGBIO' => 'mbi', 'MBI14_g04655_MAGBIO' => 'mbi', 'MCO07G653' => 'mco', 'MCO10G173' => 'mco', 'MD01G1087100' => 'mdo', 'MD01G1104200' => 'mdo', 'MD02G1205100' => 'mdo', 'MD04G1079200' => 'mdo', 'MD04G1131400' => 'mdo', 'MD07G1121600' => 'mdo', 'MD07G1157300' => 'mdo', 'MD07G1171000' => 'mdo', 'MD12G1144500' => 'mdo', 'Medtr1g094610' => 'mtr', 'Medtr4g021795' => 'mtr', 'Medtr4g023760' => 'mtr', 'Medtr7g118050' => 'mtr', 'MELO3C005582.2' => 'cme', 'MELO3C005989.2' => 'cme', 'MELO3C006192.2' => 'cme', 'MELO3C009248.2' => 'cme', 'MELO3C019817.2' => 'cme', 'Migut.B01625' => 'egut', 'Migut.B01915' => 'egut', 'Migut.F01721' => 'egut', 'Migut.J00314' => 'egut', 'MSTRG.20742' => 'ama', 'MSTRG.8134' => 'ama', 'Nitab4.5_0000096g0010' => 'nta', 'Nitab4.5_0000202g0030' => 'nta', 'Nitab4.5_0000216g0370' => 'nta', 'Nitab4.5_0000457g0230' => 'nta', 'Nitab4.5_0001702g0170' => 'nta', 'Nitab4.5_0003607g0010' => 'nta', 'Nitab4.5_0004917g0020' => 'nta', 'Nitab4.5_0007059g0010' => 'nta', 'Nitab4.5_0007184g0010' => 'nta', 'Nitab4.5_0007346g0020' => 'nta', 'Nn1g00410' => 'nnu', 'Nn1g01252' => 'nnu', 'Nn2g11168' => 'nnu', 'Nn2g13403' => 'nnu', 'Nn2g13760' => 'nnu', 'Nn4g26380' => 'nnu', 'Oeu000806.2' => 'oeu', 'Oeu005788.1' => 'oeu', 'Oeu006900.3' => 'oeu', 'Oeu007797.1' => 'oeu', 'Oeu011932.1' => 'oeu', 'Oeu022739.1' => 'oeu', 'Oeu037918.1' => 'oeu', 'Oeu055490.2' => 'oeu', 'Os01g0844400' => 'osa', 'Os02g0819100' => 'osa', 'Os03g0804300' => 'osa', 'Os05g0458000' => 'osa', 'Os07g0467800' => 'osa', 'Os12g0602200' => 'osa', 'Peaxi162Scf00013g03444' => 'pax', 'Peaxi162Scf00094g01120' => 'pax', 'Peaxi162Scf00191g01211' => 'pax', 'Peaxi162Scf00238g01110' => 'pax', 'Peaxi162Scf00330g00719' => 'pax', 'Peaxi162Scf00627g00018' => 'pax', 'PGR031G2686' => 'pgr', 'PGR042G0809' => 'pgr', 'PGR142G0193' => 'pgr', 'PGSC0003DMG400011066' => 'stu', 'PGSC0003DMG400012041' => 'stu', 'PGSC0003DMG400013678' => 'stu', 'PGSC0003DMG400023477' => 'stu', 'PGSC0003DMG400025956' => 'stu', 'PGSC0003DMG401019151' => 'stu', 'Phvul.006G116400' => 'pvu', 'Phvul.007G097300' => 'pvu', 'Phvul.010G015000' => 'pvu', 'Phvul.010G083900' => 'pvu', 'Potri.001G117100' => 'ptr', 'Potri.002G147300' => 'ptr', 'Potri.003G115600' => 'ptr', 'Potri.006G087400' => 'ptr', 'Potri.010G226100' => 'ptr', 'Potri.014G069200' => 'ptr', 'Potri.014G104000' => 'ptr', 'Potri.016G100200' => 'ptr', 'Pp3c10_20450' => 'ppa', 'Pp3c1_42400' => 'ppa', 'Pp3c3_24390' => 'ppa', 'Pp3c3_2860' => 'ppa', 'PRCOL_00003193' => 'pco', 'Prupe.2G144500' => 'ppe', 'Prupe.2G195700' => 'ppe', 'Prupe.2G209800' => 'ppe', 'Prupe.5G080000' => 'ppe', 'Prupe.6G257900' => 'ppe', 'Psat3g001160' => 'psa', 'Psat6g181880' => 'psa', 'Psat7g233720' => 'psa', 'PSO063G7587' => 'pso', 'PSO339G2145' => 'pso', 'PSO339G3369' => 'pso', 'PSO478G2747' => 'pso', 'PSO513G0140' => 'pso', 'PSO782G1614' => 'pso', 'PSO782G4889' => 'pso', 'PSO782G5485' => 'pso', 'PSO801G0241' => 'pso', 'QL07p048854' => 'qlo', 'QL08p046745' => 'qlo', 'QL08p052606' => 'qlo', 'QL08p053414' => 'qlo', 'QL08p054868' => 'qlo', 'RcHm_v2.0_Chr1g0350251' => 'rch', 'RcHm_v2.0_Chr1g0360851' => 'rch', 'RcHm_v2.0_Chr1g0362791' => 'rch', 'RcHm_v2.0_Chr3g0466281' => 'rch', 'RcHm_v2.0_Chr7g0201481' => 'rch', 'Rhsim01G0148600' => 'rsi', 'Rhsim05G0194400' => 'rsi', 'Rhsim07G0000700' => 'rsi', 'Rhsim07G0000800' => 'rsi', 'Rhsim07G0027900' => 'rsi', 'Rhsim09G0149500' => 'rsi', 'RhsimUnG0186900' => 'rsi', 'Sabra01G0089900' => 'sbr', 'Sabra02G0114700' => 'sbr', 'Sabra02G0116300' => 'sbr', 'Sabra03G0080100' => 'sbr', 'Sabra08G0024300' => 'sbr', 'Sabra10G0174300' => 'sbr', 'Sabra14G0048900' => 'sbr', 'Sabra14G0076500' => 'sbr', 'SalBow5G2513' => 'sbo', 'Sc01g0002300' => 'sci', 'Sc01g0004450' => 'sci', 'Sc06g0001680' => 'sci', 'Sc23g0003580' => 'sci', 'Sed0000913' => 'sed', 'Sed0001655' => 'sed', 'Sed0007745' => 'sed', 'Sed0010951' => 'sed', 'Sed0017599' => 'sed', 'Sed0021405' => 'sed', 'Sed0022810' => 'sed', 'SEGI_07099' => 'sgi', 'SEGI_11931' => 'sgi', 'SEGI_13187' => 'sgi', 'SEGI_29958' => 'sgi', 'SEGI_36351' => 'sgi', 'SGA_v2.0_scaffold126G33770' => 'sas', 'SGA_v2.0_scaffold153G37003' => 'sas', 'SGA_v2.0_scaffold2G01359' => 'sas', 'SGA_v2.0_scaffold5G03064' => 'sas', 'SGA_v2.0_scaffold95G28903' => 'sas', 'SHI12701' => 'shi', 'SHI26410' => 'shi', 'SHI38997' => 'shi', 'SHI53759' => 'shi', 'SHI53886' => 'shi', 'SHI54714' => 'shi', 'SMO011G0041' => 'smo', 'SMO146G0251' => 'smo', 'SMO160G0004' => 'smo', 'SMO174G0057' => 'smo', 'SMO244G0089' => 'smo', 'SMO296G0011' => 'smo', 'Solyc01g091280.3' => 'sly', 'Solyc05g047610.3' => 'sly', 'Solyc05g047640.3' => 'sly', 'Solyc05g055630.3' => 'sly', 'Solyc10g018160.2' => 'sly', 'Solyc10g084820.2' => 'sly', 'Solyc10g086565.2' => 'sly', 'Sopen01g037030' => 'spe', 'Sopen05g027920' => 'spe', 'Sopen05g034070' => 'spe', 'Sopen10g007260' => 'spe', 'Sopen10g034260' => 'spe', 'Sopen10g035950' => 'spe', 'Sp3g07710' => 'spa', 'Sp4g27420' => 'spa', 'Sp5g02450' => 'spa', 'Sp6g01280' => 'spa', 'Sp6g38480' => 'spa', 'Sp7g20780' => 'spa', 'TAR374G1413' => 'tar', 'TAR623G1777' => 'tar', 'TAR629G2370' => 'tar', 'TAR633G1759' => 'tar', 'TAR636G3387' => 'tar', 'THA.LOC104802447' => 'tha', 'THA.LOC104813916' => 'tha', 'THA.LOC104816423' => 'tha', 'THA.LOC104817246' => 'tha', 'THA.LOC104825895' => 'tha', 'Thecc.01G335200' => 'tca', 'Thecc.01G377400' => 'tca', 'Thecc.03G262200' => 'tca', 'Thecc.05G036800' => 'tca', 'Thecc.10G080500' => 'tca', 'Thecc.10G080800' => 'tca', 'Thhalv10001560m.g' => 'esa', 'Thhalv10006120m.g' => 'esa', 'Thhalv10014375m.g' => 'esa', 'Thhalv10021264m.g' => 'esa', 'Thhalv10028856m.g' => 'esa', 'TPR.G1914' => 'tpr', 'TPR.G4757' => 'tpr', 'TPR.G5595' => 'tpr', 'TWI14G0952' => 'twi', 'TWI14G1307' => 'twi', 'TWI38G2143' => 'twi', 'TWI59G0826' => 'twi', 'TWI77G0527' => 'twi', 'TWI81G0150' => 'twi', 'unitig_21.g21018' => 'ugi', 'unitig_26.g9725' => 'ugi', 'unitig_744.g24653' => 'ugi', 'unitig_749.g13778' => 'ugi', 'unitig_899.g15035' => 'ugi', 'vmacro04296' => 'vma', 'vmacro04852' => 'vma', 'vmacro13404' => 'vma', 'vmacro20169' => 'vma', 'vmacro21014' => 'vma', 'VMungo0331G0237' => 'vmu', 'VMungo0331G0706' => 'vmu', 'VMungo0331G1361' => 'vmu', 'VMungo0331G1489' => 'vmu', 'VMungo0540G1037' => 'vmu', 'VMungo0720G2487' => 'vmu', 'VMungo0720G2721' => 'vmu', 'Zm00001eb086860' => 'zma', 'Zm00001eb104760' => 'zma', 'Zm00001eb148220' => 'zma', 'Zm00001eb259030' => 'zma', 'Zm00001eb289590' => 'zma', 'Zm00001eb420150' => 'zma' ) $gf_id = 'HOM05D000968' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000968' ) $data_identifier = 'HOM05D000968' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 19, 'bol' => (int) 9, 'bra' => (int) 12, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 5, 'ccan' => (int) 7, 'cde' => (int) 5, 'cfa' => (int) 8, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 4, 'dca' => (int) 5, 'din' => (int) 5, 'dzi' => (int) 12, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 25, 'fve' => (int) 5, 'gma' => (int) 9, 'ghi' => (int) 18, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 7, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 5, 'sun' => (int) 2, 'lal' => (int) 9, 'lja' => (int) 5, 'lonja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 9, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 2, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 3, 'stu' => (int) 6, 'pvu' => (int) 4, 'ptr' => (int) 8, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 3, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 1, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 5, 'sas' => (int) 5, 'shi' => (int) 6, 'smo' => (int) 6, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 3, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420150' $species_info = array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ) $local_species = 'bca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000968', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p31690' => 'bna', 'A03p36040' => 'bna', 'A03p53730' => 'bna', 'A04p01410' => 'bna', 'A05p05420' => 'bna', 'A05p39630' => 'bna', 'A05p39640' => 'bna', 'A09p00970' => 'bna', 'A09p53060' => 'bna', 'A10p31890' => 'bna', 'Aa31LG10G15040' => 'aar', 'Aa31LG1G21090' => 'aar', 'Aa31LG1G26900' => 'aar', 'Aa31LG3G1820' => 'aar', 'Aa31LG5G1100' => 'aar', 'Aa31LG6G4740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2265' => 'aag', 'Actinidia07998' => 'ach', 'Actinidia11266' => 'ach', 'Actinidia12682' => 'ach', 'Actinidia26479' => 'ach', 'Actinidia31406' => 'ach', 'Actinidia32437' => 'ach', 'Actinidia38862' => 'ach', 'Ah.05g174230' => 'amhyb', 'Ah.05g179070' => 'amhyb', 'Ah.05g179090' => 'amhyb', 'Ah.12g059950' => 'amhyb', 'AL3G20480' => 'aly', 'AL4G44520' => 'aly', 'AL5G43110' => 'aly', 'AL6G13890' => 'aly', 'AL6G52620' => 'aly', 'AL7G30830' => 'aly', 'Aqoxy1G00899' => 'aox', 'Aqoxy5G04333' => 'aox', 'Aqoxy7G00641' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3IZ0NN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4EF6AW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W9P8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79GA3M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C43NQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFCU6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G95YVJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCHK29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LU1UG8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX91RN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGB4B1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8DA0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9H7JI' => 'arhy', 'AT3G09320' => 'ath', 'AT3G60800' => 'ath', 'AT4G00840' => 'ath', 'AT4G22750' => 'ath', 'AT5G04270' => 'ath', 'ATR0090G003' => 'atr', 'ATR0559G349' => 'atr', 'ATR0680G261' => 'atr', 'ATR0810G048' => 'atr', 'Atru.chr12.831' => 'acertr', 'Atru.chr5.303' => 'acertr', 'Atru.chr5.748' => 'acertr', 'Atru.chr8.1999' => 'acertr', 'Atru.chr9.1436' => 'acertr', 'AUR62004211' => 'cqu', 'AUR62004548' => 'cqu', 'AUR62013637' => 'cqu', 'AUR62022662' => 'cqu', 'AUR62025777' => 'cqu', 'AUR62042386' => 'cqu', 'BcaB01g02310' => 'bca', 'BcaB01g06062' => 'bca', 'BcaB02g08975' => 'bca', 'BcaB02g08980' => 'bca', 'BcaC01g04228' => 'bca', 'BcaC01g06830' => 'bca', 'BcaC02g10186' => 'bca', 'BcaC02g12214' => 'bca', 'BcaC04g24101' => 'bca', 'BcaC05g29520' => 'bca', 'BcaC05g29661' => 'bca', 'BcaC06g32130' => 'bca', 'BcaC06g32131' => 'bca', 'BcaC07g40601' => 'bca', 'BcaC07g42641' => 'bca', 'BcaNung01038' => 'bca', 'BcaNung01676' => 'bca', 'BcaNung02480' => 'bca', 'BcaNung07376' => 'bca', 'BolC3t16146H' => 'bol', 'BolC3t16637H' => 'bol', 'BolC4t22257H' => 'bol', 'BolC4t24728H' => 'bol', 'BolC5t34517H' => 'bol', 'BolC7t45703H' => 'bol', 'BolC8t51166H' => 'bol', 'BolC9t53038H' => 'bol', 'BolC9t60000H' => 'bol', 'BraA01t01345Z' => 'bra', 'BraA01t01346Z' => 'bra', 'BraA01t01348Z' => 'bra', 'BraA03t12347Z' => 'bra', 'BraA03t12775Z' => 'bra', 'BraA03t14439Z' => 'bra', 'BraA04t15860Z' => 'bra', 'BraA05t19511Z' => 'bra', 'BraA05t22746Z' => 'bra', 'BraA09t35767Z' => 'bra', 'BraA09t40732Z' => 'bra', 'BraA10t45233Z' => 'bra', 'C03p38720' => 'bna', 'C03p43680' => 'bna', 'C04p06350' => 'bna', 'C04p31800' => 'bna', 'C05p58680' => 'bna', 'C07p52110' => 'bna', 'C08p35760' => 'bna', 'C09p01050' => 'bna', 'C09p72600' => 'bna', 'CAN.G106.2' => 'can', 'CAN.G1482.1' => 'can', 'CAN.G324.12' => 'can', 'CAN.G388.20' => 'can', 'CAN.G412.7' => 'can', 'CAN.G694.32' => 'can', 'CAN.G92.12' => 'can', 'CANSAT11G2353' => 'cansat', 'CANSAT21G1398' => 'cansat', 'CANSAT56G2456' => 'cansat', 'CANSAT56G3031' => 'cansat', 'CANSAT56G4539' => 'cansat', 'CARHR083680' => 'chi', 'CARHR171190' => 'chi', 'CARHR209010' => 'chi', 'CARHR229680' => 'chi', 'CARHR249490' => 'chi', 'Carub.0003s0844' => 'cru', 'Carub.0005s2755' => 'cru', 'Carub.0006s0322' => 'cru', 'Carub.0006s3586' => 'cru', 'Carub.0007s1855' => 'cru', 'Ca_07808_v3' => 'car', 'Ca_09535_v3' => 'car', 'Ca_10548_v3' => 'car', 'Ca_19913_v3' => 'car', 'Ca_19916_v3' => 'car', 'Ca_19975_v3' => 'car', 'CBR_g22876' => 'cbr', 'CBR_g22879' => 'cbr', 'CBR_g38491' => 'cbr', 'CBR_g54185' => 'cbr', 'CBR_g54190' => 'cbr', 'Cc02_g11020' => 'ccan', 'Cc02_g23920' => 'ccan', 'Cc02_g39860' => 'ccan', 'Cc02_g39870' => 'ccan', 'Cc03_g06760' => 'ccan', 'Cc06_g02450' => 'ccan', 'Cc09_g09450' => 'ccan', 'CDE02G1959' => 'cde', 'CDE04G0600' => 'cde', 'CDE07G1996' => 'cde', 'CDE07G2078' => 'cde', 'CDE11G0611' => 'cde', 'Cfa001683' => 'cfa', 'Cfa001734' => 'cfa', 'Cfa001737' => 'cfa', 'Cfa003751' => 'cfa', 'Cfa012019' => 'cfa', 'Cfa017353' => 'cfa', 'Cfa017732' => 'cfa', 'Cfa022464' => 'cfa', 'Ciclev10012400m.g' => 'ccl', 'Ciclev10021242m.g' => 'ccl', 'Ciclev10021302m.g' => 'ccl', 'Ciclev10021463m.g' => 'ccl', 'Ciclev10032359m.g' => 'ccl', 'CiPaw.01G081000' => 'cil', 'CiPaw.01G262500' => 'cil', 'CiPaw.01G269800' => 'cil', 'CiPaw.02G168400' => 'cil', 'CiPaw.05G119500' => 'cil', 'CiPaw.11G147300' => 'cil', 'ClCG01G003630' => 'cla', 'ClCG05G000510' => 'cla', 'ClCG05G002300' => 'cla', 'ClCG08G007650' => 'cla', 'ClCG10G021250' => 'cla', 'COL.COLO4_06218' => 'col', 'COL.COLO4_12538' => 'col', 'COL.COLO4_14775' => 'col', 'COL.COLO4_23875' => 'col', 'Cpa.g.sc141.16' => 'cpa', 'Cpa.g.sc169.16' => 'cpa', 'Cpa.g.sc244.4' => 'cpa', 'Cpa.g.sc244.5' => 'cpa', 'Cpa.g.sc29.87' => 'cpa', 'Cpa.g.sc53.115' => 'cpa', 'Cre03.g207502' => 'cre', 'Cre06.g277000' => 'cre', 'Cre09.g394050' => 'cre', 'CsaV3_3G007680' => 'csa', 'CsaV3_3G009710' => 'csa', 'CsaV3_3G034790' => 'csa', 'CsaV3_5G003750' => 'csa', 'CsaV3_6G036620' => 'csa', 'CSS0002288' => 'camsi', 'CSS0011250' => 'camsi', 'CSS0021619' => 'camsi', 'CSS0046701' => 'camsi', 'DCAR_006420' => 'dca', 'DCAR_006865' => 'dca', 'DCAR_008558' => 'dca', 'DCAR_028754' => 'dca', 'DCAR_028755' => 'dca', 'Dinv31218' => 'din', 'Dinv32371' => 'din', 'Dinv34250' => 'din', 'Dinv37156' => 'din', 'Dinv43704' => 'din', 'Duzib093G1811' => 'dzi', 'Duzib106G1622' => 'dzi', 'Duzib114G0504' => 'dzi', 'Duzib128G0338' => 'dzi', 'Duzib128G1577' => 'dzi', 'Duzib133G0104' => 'dzi', 'Duzib133G1080' => 'dzi', 'Duzib138G0324' => 'dzi', 'Duzib138G0394' => 'dzi', 'Duzib205G0122' => 'dzi', 'Duzib268G1020' => 'dzi', 'Duzib268G1359' => 'dzi', 'ECA232G3929' => 'eca', 'ECA236G2210' => 'eca', 'ECA236G2287' => 'eca', 'ECA240G4568' => 'eca', 'ECA247G0894' => 'eca', 'EL10Ac1g00200' => 'bvu', 'EL10Ac1g00886' => 'bvu', 'EL10As1g23091' => 'bvu', 'EL10As1g23092' => 'bvu', 'Eucgr.A01284' => 'egr', 'Eucgr.A01285' => 'egr', 'Eucgr.D02456' => 'egr', 'Eucgr.E00018' => 'egr', 'Eucgr.E01439' => 'egr', 'Eucgr.G02859' => 'egr', 'FAN01G0168' => 'fan', 'FAN01G0453' => 'fan', 'FAN01G2761' => 'fan', 'FAN02G1239' => 'fan', 'FAN03G0645' => 'fan', 'FAN03G2707' => 'fan', 'FAN03G2978' => 'fan', 'FAN04G0227' => 'fan', 'FAN06G0091' => 'fan', 'FAN06G1418' => 'fan', 'FAN06G1512' => 'fan', 'FAN06G1986' => 'fan', 'FAN06G2905' => 'fan', 'FAN06G4325' => 'fan', 'FAN08G0033' => 'fan', 'FAN09G0642' => 'fan', 'FAN10G1763' => 'fan', 'FAN10G2026' => 'fan', 'FAN10G2513' => 'fan', 'FAN10G3402' => 'fan', 'FAN10G3564' => 'fan', 'FAN10G3987' => 'fan', 'FAN13G1490' => 'fan', 'FAN14G5857' => 'fan', 'FAN18G1188' => 'fan', 'FvH4_5g00750' => 'fve', 'FvH4_6g13410' => 'fve', 'FvH4_7g11740' => 'fve', 'FvH4_7g17410' => 'fve', 'FvH4_7g18860' => 'fve', 'Glyma.01G099100' => 'gma', 'Glyma.01G142300' => 'gma', 'Glyma.03G025500' => 'gma', 'Glyma.03G069700' => 'gma', 'Glyma.03G260000' => 'gma', 'Glyma.09G269800' => 'gma', 'Glyma.10G208700' => 'gma', 'Glyma.18G220400' => 'gma', 'Glyma.20G182000' => 'gma', 'Gohir.A01G221726' => 'ghi', 'Gohir.A07G134600' => 'ghi', 'Gohir.A07G146000' => 'ghi', 'Gohir.A08G173900' => 'ghi', 'Gohir.A09G194900' => 'ghi', 'Gohir.A10G204100' => 'ghi', 'Gohir.A11G080600' => 'ghi', 'Gohir.A11G327500' => 'ghi', 'Gohir.A12G101800' => 'ghi', 'Gohir.D01G211200' => 'ghi', 'Gohir.D07G139200' => 'ghi', 'Gohir.D07G152100' => 'ghi', 'Gohir.D08G192600' => 'ghi', 'Gohir.D09G189200' => 'ghi', 'Gohir.D10G212000' => 'ghi', 'Gohir.D11G085200' => 'ghi', 'Gohir.D11G346400' => 'ghi', 'Gohir.D12G104800' => 'ghi', 'Gorai.001G151300' => 'gra', 'Gorai.001G174100' => 'gra', 'Gorai.002G257000' => 'gra', 'Gorai.004G202600' => 'gra', 'Gorai.007G090900' => 'gra', 'Gorai.007G376700' => 'gra', 'Gorai.008G114100' => 'gra', 'Gorai.011G237900' => 'gra', 'GSVIVG01005450001' => 'vvi', 'GSVIVG01016232001' => 'vvi', 'GSVIVG01026157001' => 'vvi', 'GSVIVG01027419001' => 'vvi', 'GSVIVG01027631001' => 'vvi', 'GSVIVG01034143001' => 'vvi', 'HanXRQChr03g0093921' => 'han', 'HanXRQChr04g0120001' => 'han', 'HanXRQChr04g0122561' => 'han', 'HanXRQChr09g0246851' => 'han', 'HanXRQChr10g0293311' => 'han', 'HanXRQChr13g0425231' => 'han', 'HanXRQChr16g0532571' => 'han', 'Haze_09050' => 'cav', 'Haze_15715' => 'cav', 'Haze_15716' => 'cav', 'Haze_16803' => 'cav', 'Haze_16850' => 'cav', 'Hma1.2p1_0301F.1_g118655' => 'hma', 'Hma1.2p1_0309F.1_g120590' => 'hma', 'Hma1.2p1_0936F.1_g238900' => 'hma', 'Hma1.2p1_3552F.1_g336740' => 'hma', 'HPP92_003520' => 'vpl', 'HPP92_006628' => 'vpl', 'HPP92_006645' => 'vpl', 'HPP92_014669' => 'vpl', 'HPP92_015077' => 'vpl', 'Hund16742' => 'sun', 'Hund17022' => 'sun', 'Lalb_Chr02g0152131' => 'lal', 'Lalb_Chr05g0225371' => 'lal', 'Lalb_Chr07g0189841' => 'lal', 'Lalb_Chr07g0192961' => 'lal', 'Lalb_Chr12g0208221' => 'lal', 'Lalb_Chr13g0291211' => 'lal', 'Lalb_Chr13g0291781' => 'lal', 'Lalb_Chr18g0044651' => 'lal', 'Lalb_Chr21g0313731' => 'lal', 'Lj1g0022533' => 'lja', 'Lj2A18T50' => 'lonja', 'Lj2A92G93' => 'lonja', 'Lj3A965T73' => 'lonja', 'Lj3g0000673' => 'lja', 'Lj3g0002666' => 'lja', 'Lj4g0016985' => 'lja', 'Lj5g0003625' => 'lja', 'Lj7A529G36' => 'lonja', 'Lj9A569T49' => 'lonja', 'Lj9A604T63' => 'lonja', 'Lsat_1_v5_gn_3_132060' => 'lsa', 'Lsat_1_v5_gn_4_68941' => 'lsa', 'Lsat_1_v5_gn_5_95580' => 'lsa', 'Lsat_1_v5_gn_7_161' => 'lsa', 'Lsat_1_v5_gn_7_7041' => 'lsa', 'Lsat_1_v5_gn_9_33481' => 'lsa', 'Lsat_1_v5_gn_9_68260' => 'lsa', 'Manes.01G073100' => 'mes', 'Manes.01G266300' => 'mes', 'Manes.02G033300' => 'mes', 'Manes.05G017900' => 'mes', 'Manes.05G046100' => 'mes', 'Manes.08G080900' => 'mes', 'Manes.10G049400' => 'mes', 'Mapoly0009s0186' => 'mpo', 'Mapoly0036s0118' => 'mpo', 'Mapoly0101s0046' => 'mpo', 'MBI04_g30218_MAGBIO' => 'mbi', 'MBI04_g35564_MAGBIO' => 'mbi', 'MBI12_g34011_MAGBIO' => 'mbi', 'MBI14_g04655_MAGBIO' => 'mbi', 'MCO07G653' => 'mco', 'MCO10G173' => 'mco', 'MD01G1087100' => 'mdo', 'MD01G1104200' => 'mdo', 'MD02G1205100' => 'mdo', 'MD04G1079200' => 'mdo', 'MD04G1131400' => 'mdo', 'MD07G1121600' => 'mdo', 'MD07G1157300' => 'mdo', 'MD07G1171000' => 'mdo', 'MD12G1144500' => 'mdo', 'Medtr1g094610' => 'mtr', 'Medtr4g021795' => 'mtr', 'Medtr4g023760' => 'mtr', 'Medtr7g118050' => 'mtr', 'MELO3C005582.2' => 'cme', 'MELO3C005989.2' => 'cme', 'MELO3C006192.2' => 'cme', 'MELO3C009248.2' => 'cme', 'MELO3C019817.2' => 'cme', 'Migut.B01625' => 'egut', 'Migut.B01915' => 'egut', 'Migut.F01721' => 'egut', 'Migut.J00314' => 'egut', 'MSTRG.20742' => 'ama', 'MSTRG.8134' => 'ama', 'Nitab4.5_0000096g0010' => 'nta', 'Nitab4.5_0000202g0030' => 'nta', 'Nitab4.5_0000216g0370' => 'nta', 'Nitab4.5_0000457g0230' => 'nta', 'Nitab4.5_0001702g0170' => 'nta', 'Nitab4.5_0003607g0010' => 'nta', 'Nitab4.5_0004917g0020' => 'nta', 'Nitab4.5_0007059g0010' => 'nta', 'Nitab4.5_0007184g0010' => 'nta', 'Nitab4.5_0007346g0020' => 'nta', 'Nn1g00410' => 'nnu', 'Nn1g01252' => 'nnu', 'Nn2g11168' => 'nnu', 'Nn2g13403' => 'nnu', 'Nn2g13760' => 'nnu', 'Nn4g26380' => 'nnu', 'Oeu000806.2' => 'oeu', 'Oeu005788.1' => 'oeu', 'Oeu006900.3' => 'oeu', 'Oeu007797.1' => 'oeu', 'Oeu011932.1' => 'oeu', 'Oeu022739.1' => 'oeu', 'Oeu037918.1' => 'oeu', 'Oeu055490.2' => 'oeu', 'Os01g0844400' => 'osa', 'Os02g0819100' => 'osa', 'Os03g0804300' => 'osa', 'Os05g0458000' => 'osa', 'Os07g0467800' => 'osa', 'Os12g0602200' => 'osa', 'Peaxi162Scf00013g03444' => 'pax', 'Peaxi162Scf00094g01120' => 'pax', 'Peaxi162Scf00191g01211' => 'pax', 'Peaxi162Scf00238g01110' => 'pax', 'Peaxi162Scf00330g00719' => 'pax', 'Peaxi162Scf00627g00018' => 'pax', 'PGR031G2686' => 'pgr', 'PGR042G0809' => 'pgr', 'PGR142G0193' => 'pgr', 'PGSC0003DMG400011066' => 'stu', 'PGSC0003DMG400012041' => 'stu', 'PGSC0003DMG400013678' => 'stu', 'PGSC0003DMG400023477' => 'stu', 'PGSC0003DMG400025956' => 'stu', 'PGSC0003DMG401019151' => 'stu', 'Phvul.006G116400' => 'pvu', 'Phvul.007G097300' => 'pvu', 'Phvul.010G015000' => 'pvu', 'Phvul.010G083900' => 'pvu', 'Potri.001G117100' => 'ptr', 'Potri.002G147300' => 'ptr', 'Potri.003G115600' => 'ptr', 'Potri.006G087400' => 'ptr', 'Potri.010G226100' => 'ptr', 'Potri.014G069200' => 'ptr', 'Potri.014G104000' => 'ptr', 'Potri.016G100200' => 'ptr', 'Pp3c10_20450' => 'ppa', 'Pp3c1_42400' => 'ppa', 'Pp3c3_24390' => 'ppa', 'Pp3c3_2860' => 'ppa', 'PRCOL_00003193' => 'pco', 'Prupe.2G144500' => 'ppe', 'Prupe.2G195700' => 'ppe', 'Prupe.2G209800' => 'ppe', 'Prupe.5G080000' => 'ppe', 'Prupe.6G257900' => 'ppe', 'Psat3g001160' => 'psa', 'Psat6g181880' => 'psa', 'Psat7g233720' => 'psa', 'PSO063G7587' => 'pso', 'PSO339G2145' => 'pso', 'PSO339G3369' => 'pso', 'PSO478G2747' => 'pso', 'PSO513G0140' => 'pso', 'PSO782G1614' => 'pso', 'PSO782G4889' => 'pso', 'PSO782G5485' => 'pso', 'PSO801G0241' => 'pso', 'QL07p048854' => 'qlo', 'QL08p046745' => 'qlo', 'QL08p052606' => 'qlo', 'QL08p053414' => 'qlo', 'QL08p054868' => 'qlo', 'RcHm_v2.0_Chr1g0350251' => 'rch', 'RcHm_v2.0_Chr1g0360851' => 'rch', 'RcHm_v2.0_Chr1g0362791' => 'rch', 'RcHm_v2.0_Chr3g0466281' => 'rch', 'RcHm_v2.0_Chr7g0201481' => 'rch', 'Rhsim01G0148600' => 'rsi', 'Rhsim05G0194400' => 'rsi', 'Rhsim07G0000700' => 'rsi', 'Rhsim07G0000800' => 'rsi', 'Rhsim07G0027900' => 'rsi', 'Rhsim09G0149500' => 'rsi', 'RhsimUnG0186900' => 'rsi', 'Sabra01G0089900' => 'sbr', 'Sabra02G0114700' => 'sbr', 'Sabra02G0116300' => 'sbr', 'Sabra03G0080100' => 'sbr', 'Sabra08G0024300' => 'sbr', 'Sabra10G0174300' => 'sbr', 'Sabra14G0048900' => 'sbr', 'Sabra14G0076500' => 'sbr', 'SalBow5G2513' => 'sbo', 'Sc01g0002300' => 'sci', 'Sc01g0004450' => 'sci', 'Sc06g0001680' => 'sci', 'Sc23g0003580' => 'sci', 'Sed0000913' => 'sed', 'Sed0001655' => 'sed', 'Sed0007745' => 'sed', 'Sed0010951' => 'sed', 'Sed0017599' => 'sed', 'Sed0021405' => 'sed', 'Sed0022810' => 'sed', 'SEGI_07099' => 'sgi', 'SEGI_11931' => 'sgi', 'SEGI_13187' => 'sgi', 'SEGI_29958' => 'sgi', 'SEGI_36351' => 'sgi', 'SGA_v2.0_scaffold126G33770' => 'sas', 'SGA_v2.0_scaffold153G37003' => 'sas', 'SGA_v2.0_scaffold2G01359' => 'sas', 'SGA_v2.0_scaffold5G03064' => 'sas', 'SGA_v2.0_scaffold95G28903' => 'sas', 'SHI12701' => 'shi', 'SHI26410' => 'shi', 'SHI38997' => 'shi', 'SHI53759' => 'shi', 'SHI53886' => 'shi', 'SHI54714' => 'shi', 'SMO011G0041' => 'smo', 'SMO146G0251' => 'smo', 'SMO160G0004' => 'smo', 'SMO174G0057' => 'smo', 'SMO244G0089' => 'smo', 'SMO296G0011' => 'smo', 'Solyc01g091280.3' => 'sly', 'Solyc05g047610.3' => 'sly', 'Solyc05g047640.3' => 'sly', 'Solyc05g055630.3' => 'sly', 'Solyc10g018160.2' => 'sly', 'Solyc10g084820.2' => 'sly', 'Solyc10g086565.2' => 'sly', 'Sopen01g037030' => 'spe', 'Sopen05g027920' => 'spe', 'Sopen05g034070' => 'spe', 'Sopen10g007260' => 'spe', 'Sopen10g034260' => 'spe', 'Sopen10g035950' => 'spe', 'Sp3g07710' => 'spa', 'Sp4g27420' => 'spa', 'Sp5g02450' => 'spa', 'Sp6g01280' => 'spa', 'Sp6g38480' => 'spa', 'Sp7g20780' => 'spa', 'TAR374G1413' => 'tar', 'TAR623G1777' => 'tar', 'TAR629G2370' => 'tar', 'TAR633G1759' => 'tar', 'TAR636G3387' => 'tar', 'THA.LOC104802447' => 'tha', 'THA.LOC104813916' => 'tha', 'THA.LOC104816423' => 'tha', 'THA.LOC104817246' => 'tha', 'THA.LOC104825895' => 'tha', 'Thecc.01G335200' => 'tca', 'Thecc.01G377400' => 'tca', 'Thecc.03G262200' => 'tca', 'Thecc.05G036800' => 'tca', 'Thecc.10G080500' => 'tca', 'Thecc.10G080800' => 'tca', 'Thhalv10001560m.g' => 'esa', 'Thhalv10006120m.g' => 'esa', 'Thhalv10014375m.g' => 'esa', 'Thhalv10021264m.g' => 'esa', 'Thhalv10028856m.g' => 'esa', 'TPR.G1914' => 'tpr', 'TPR.G4757' => 'tpr', 'TPR.G5595' => 'tpr', 'TWI14G0952' => 'twi', 'TWI14G1307' => 'twi', 'TWI38G2143' => 'twi', 'TWI59G0826' => 'twi', 'TWI77G0527' => 'twi', 'TWI81G0150' => 'twi', 'unitig_21.g21018' => 'ugi', 'unitig_26.g9725' => 'ugi', 'unitig_744.g24653' => 'ugi', 'unitig_749.g13778' => 'ugi', 'unitig_899.g15035' => 'ugi', 'vmacro04296' => 'vma', 'vmacro04852' => 'vma', 'vmacro13404' => 'vma', 'vmacro20169' => 'vma', 'vmacro21014' => 'vma', 'VMungo0331G0237' => 'vmu', 'VMungo0331G0706' => 'vmu', 'VMungo0331G1361' => 'vmu', 'VMungo0331G1489' => 'vmu', 'VMungo0540G1037' => 'vmu', 'VMungo0720G2487' => 'vmu', 'VMungo0720G2721' => 'vmu', 'Zm00001eb086860' => 'zma', 'Zm00001eb104760' => 'zma', 'Zm00001eb148220' => 'zma', 'Zm00001eb259030' => 'zma', 'Zm00001eb289590' => 'zma', 'Zm00001eb420150' => 'zma' ), 'gf_id' => 'HOM05D000968', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000968' ), 'data_identifier' => 'HOM05D000968', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000968', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p31690' => 'bna', 'A03p36040' => 'bna', 'A03p53730' => 'bna', 'A04p01410' => 'bna', 'A05p05420' => 'bna', 'A05p39630' => 'bna', 'A05p39640' => 'bna', 'A09p00970' => 'bna', 'A09p53060' => 'bna', 'A10p31890' => 'bna', 'Aa31LG10G15040' => 'aar', 'Aa31LG1G21090' => 'aar', 'Aa31LG1G26900' => 'aar', 'Aa31LG3G1820' => 'aar', 'Aa31LG5G1100' => 'aar', 'Aa31LG6G4740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2265' => 'aag', 'Actinidia07998' => 'ach', 'Actinidia11266' => 'ach', 'Actinidia12682' => 'ach', 'Actinidia26479' => 'ach', 'Actinidia31406' => 'ach', 'Actinidia32437' => 'ach', 'Actinidia38862' => 'ach', 'Ah.05g174230' => 'amhyb', 'Ah.05g179070' => 'amhyb', 'Ah.05g179090' => 'amhyb', 'Ah.12g059950' => 'amhyb', 'AL3G20480' => 'aly', 'AL4G44520' => 'aly', 'AL5G43110' => 'aly', 'AL6G13890' => 'aly', 'AL6G52620' => 'aly', 'AL7G30830' => 'aly', 'Aqoxy1G00899' => 'aox', 'Aqoxy5G04333' => 'aox', 'Aqoxy7G00641' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3IZ0NN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4EF6AW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W9P8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79GA3M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C43NQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFCU6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G95YVJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCHK29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LU1UG8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX91RN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGB4B1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8DA0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9H7JI' => 'arhy', 'AT3G09320' => 'ath', 'AT3G60800' => 'ath', 'AT4G00840' => 'ath', 'AT4G22750' => 'ath', 'AT5G04270' => 'ath', 'ATR0090G003' => 'atr', 'ATR0559G349' => 'atr', 'ATR0680G261' => 'atr', 'ATR0810G048' => 'atr', 'Atru.chr12.831' => 'acertr', 'Atru.chr5.303' => 'acertr', 'Atru.chr5.748' => 'acertr', 'Atru.chr8.1999' => 'acertr', 'Atru.chr9.1436' => 'acertr', 'AUR62004211' => 'cqu', 'AUR62004548' => 'cqu', 'AUR62013637' => 'cqu', 'AUR62022662' => 'cqu', 'AUR62025777' => 'cqu', 'AUR62042386' => 'cqu', 'BcaB01g02310' => 'bca', 'BcaB01g06062' => 'bca', 'BcaB02g08975' => 'bca', 'BcaB02g08980' => 'bca', 'BcaC01g04228' => 'bca', 'BcaC01g06830' => 'bca', 'BcaC02g10186' => 'bca', 'BcaC02g12214' => 'bca', 'BcaC04g24101' => 'bca', 'BcaC05g29520' => 'bca', 'BcaC05g29661' => 'bca', 'BcaC06g32130' => 'bca', 'BcaC06g32131' => 'bca', 'BcaC07g40601' => 'bca', 'BcaC07g42641' => 'bca', 'BcaNung01038' => 'bca', 'BcaNung01676' => 'bca', 'BcaNung02480' => 'bca', 'BcaNung07376' => 'bca', 'BolC3t16146H' => 'bol', 'BolC3t16637H' => 'bol', 'BolC4t22257H' => 'bol', 'BolC4t24728H' => 'bol', 'BolC5t34517H' => 'bol', 'BolC7t45703H' => 'bol', 'BolC8t51166H' => 'bol', 'BolC9t53038H' => 'bol', 'BolC9t60000H' => 'bol', 'BraA01t01345Z' => 'bra', 'BraA01t01346Z' => 'bra', 'BraA01t01348Z' => 'bra', 'BraA03t12347Z' => 'bra', 'BraA03t12775Z' => 'bra', 'BraA03t14439Z' => 'bra', 'BraA04t15860Z' => 'bra', 'BraA05t19511Z' => 'bra', 'BraA05t22746Z' => 'bra', 'BraA09t35767Z' => 'bra', 'BraA09t40732Z' => 'bra', 'BraA10t45233Z' => 'bra', 'C03p38720' => 'bna', 'C03p43680' => 'bna', 'C04p06350' => 'bna', 'C04p31800' => 'bna', 'C05p58680' => 'bna', 'C07p52110' => 'bna', 'C08p35760' => 'bna', 'C09p01050' => 'bna', 'C09p72600' => 'bna', 'CAN.G106.2' => 'can', 'CAN.G1482.1' => 'can', 'CAN.G324.12' => 'can', 'CAN.G388.20' => 'can', 'CAN.G412.7' => 'can', 'CAN.G694.32' => 'can', 'CAN.G92.12' => 'can', 'CANSAT11G2353' => 'cansat', 'CANSAT21G1398' => 'cansat', 'CANSAT56G2456' => 'cansat', 'CANSAT56G3031' => 'cansat', 'CANSAT56G4539' => 'cansat', 'CARHR083680' => 'chi', 'CARHR171190' => 'chi', 'CARHR209010' => 'chi', 'CARHR229680' => 'chi', 'CARHR249490' => 'chi', 'Carub.0003s0844' => 'cru', 'Carub.0005s2755' => 'cru', 'Carub.0006s0322' => 'cru', 'Carub.0006s3586' => 'cru', 'Carub.0007s1855' => 'cru', 'Ca_07808_v3' => 'car', 'Ca_09535_v3' => 'car', 'Ca_10548_v3' => 'car', 'Ca_19913_v3' => 'car', 'Ca_19916_v3' => 'car', 'Ca_19975_v3' => 'car', 'CBR_g22876' => 'cbr', 'CBR_g22879' => 'cbr', 'CBR_g38491' => 'cbr', 'CBR_g54185' => 'cbr', 'CBR_g54190' => 'cbr', 'Cc02_g11020' => 'ccan', 'Cc02_g23920' => 'ccan', 'Cc02_g39860' => 'ccan', 'Cc02_g39870' => 'ccan', 'Cc03_g06760' => 'ccan', 'Cc06_g02450' => 'ccan', 'Cc09_g09450' => 'ccan', 'CDE02G1959' => 'cde', 'CDE04G0600' => 'cde', 'CDE07G1996' => 'cde', 'CDE07G2078' => 'cde', 'CDE11G0611' => 'cde', 'Cfa001683' => 'cfa', 'Cfa001734' => 'cfa', 'Cfa001737' => 'cfa', 'Cfa003751' => 'cfa', 'Cfa012019' => 'cfa', 'Cfa017353' => 'cfa', 'Cfa017732' => 'cfa', 'Cfa022464' => 'cfa', 'Ciclev10012400m.g' => 'ccl', 'Ciclev10021242m.g' => 'ccl', 'Ciclev10021302m.g' => 'ccl', 'Ciclev10021463m.g' => 'ccl', 'Ciclev10032359m.g' => 'ccl', 'CiPaw.01G081000' => 'cil', 'CiPaw.01G262500' => 'cil', 'CiPaw.01G269800' => 'cil', 'CiPaw.02G168400' => 'cil', 'CiPaw.05G119500' => 'cil', 'CiPaw.11G147300' => 'cil', 'ClCG01G003630' => 'cla', 'ClCG05G000510' => 'cla', 'ClCG05G002300' => 'cla', 'ClCG08G007650' => 'cla', 'ClCG10G021250' => 'cla', 'COL.COLO4_06218' => 'col', 'COL.COLO4_12538' => 'col', 'COL.COLO4_14775' => 'col', 'COL.COLO4_23875' => 'col', 'Cpa.g.sc141.16' => 'cpa', 'Cpa.g.sc169.16' => 'cpa', 'Cpa.g.sc244.4' => 'cpa', 'Cpa.g.sc244.5' => 'cpa', 'Cpa.g.sc29.87' => 'cpa', 'Cpa.g.sc53.115' => 'cpa', 'Cre03.g207502' => 'cre', 'Cre06.g277000' => 'cre', 'Cre09.g394050' => 'cre', 'CsaV3_3G007680' => 'csa', 'CsaV3_3G009710' => 'csa', 'CsaV3_3G034790' => 'csa', 'CsaV3_5G003750' => 'csa', 'CsaV3_6G036620' => 'csa', 'CSS0002288' => 'camsi', 'CSS0011250' => 'camsi', 'CSS0021619' => 'camsi', 'CSS0046701' => 'camsi', 'DCAR_006420' => 'dca', 'DCAR_006865' => 'dca', 'DCAR_008558' => 'dca', 'DCAR_028754' => 'dca', 'DCAR_028755' => 'dca', 'Dinv31218' => 'din', 'Dinv32371' => 'din', 'Dinv34250' => 'din', 'Dinv37156' => 'din', 'Dinv43704' => 'din', 'Duzib093G1811' => 'dzi', 'Duzib106G1622' => 'dzi', 'Duzib114G0504' => 'dzi', 'Duzib128G0338' => 'dzi', 'Duzib128G1577' => 'dzi', 'Duzib133G0104' => 'dzi', 'Duzib133G1080' => 'dzi', 'Duzib138G0324' => 'dzi', 'Duzib138G0394' => 'dzi', 'Duzib205G0122' => 'dzi', 'Duzib268G1020' => 'dzi', 'Duzib268G1359' => 'dzi', 'ECA232G3929' => 'eca', 'ECA236G2210' => 'eca', 'ECA236G2287' => 'eca', 'ECA240G4568' => 'eca', 'ECA247G0894' => 'eca', 'EL10Ac1g00200' => 'bvu', 'EL10Ac1g00886' => 'bvu', 'EL10As1g23091' => 'bvu', 'EL10As1g23092' => 'bvu', 'Eucgr.A01284' => 'egr', 'Eucgr.A01285' => 'egr', 'Eucgr.D02456' => 'egr', 'Eucgr.E00018' => 'egr', 'Eucgr.E01439' => 'egr', 'Eucgr.G02859' => 'egr', 'FAN01G0168' => 'fan', 'FAN01G0453' => 'fan', 'FAN01G2761' => 'fan', 'FAN02G1239' => 'fan', 'FAN03G0645' => 'fan', 'FAN03G2707' => 'fan', 'FAN03G2978' => 'fan', 'FAN04G0227' => 'fan', 'FAN06G0091' => 'fan', 'FAN06G1418' => 'fan', 'FAN06G1512' => 'fan', 'FAN06G1986' => 'fan', 'FAN06G2905' => 'fan', 'FAN06G4325' => 'fan', 'FAN08G0033' => 'fan', 'FAN09G0642' => 'fan', 'FAN10G1763' => 'fan', 'FAN10G2026' => 'fan', 'FAN10G2513' => 'fan', 'FAN10G3402' => 'fan', 'FAN10G3564' => 'fan', 'FAN10G3987' => 'fan', 'FAN13G1490' => 'fan', 'FAN14G5857' => 'fan', 'FAN18G1188' => 'fan', 'FvH4_5g00750' => 'fve', 'FvH4_6g13410' => 'fve', 'FvH4_7g11740' => 'fve', 'FvH4_7g17410' => 'fve', 'FvH4_7g18860' => 'fve', 'Glyma.01G099100' => 'gma', 'Glyma.01G142300' => 'gma', 'Glyma.03G025500' => 'gma', 'Glyma.03G069700' => 'gma', 'Glyma.03G260000' => 'gma', 'Glyma.09G269800' => 'gma', 'Glyma.10G208700' => 'gma', 'Glyma.18G220400' => 'gma', 'Glyma.20G182000' => 'gma', 'Gohir.A01G221726' => 'ghi', 'Gohir.A07G134600' => 'ghi', 'Gohir.A07G146000' => 'ghi', 'Gohir.A08G173900' => 'ghi', 'Gohir.A09G194900' => 'ghi', 'Gohir.A10G204100' => 'ghi', 'Gohir.A11G080600' => 'ghi', 'Gohir.A11G327500' => 'ghi', 'Gohir.A12G101800' => 'ghi', 'Gohir.D01G211200' => 'ghi', 'Gohir.D07G139200' => 'ghi', 'Gohir.D07G152100' => 'ghi', 'Gohir.D08G192600' => 'ghi', 'Gohir.D09G189200' => 'ghi', 'Gohir.D10G212000' => 'ghi', 'Gohir.D11G085200' => 'ghi', 'Gohir.D11G346400' => 'ghi', 'Gohir.D12G104800' => 'ghi', 'Gorai.001G151300' => 'gra', 'Gorai.001G174100' => 'gra', 'Gorai.002G257000' => 'gra', 'Gorai.004G202600' => 'gra', 'Gorai.007G090900' => 'gra', 'Gorai.007G376700' => 'gra', 'Gorai.008G114100' => 'gra', 'Gorai.011G237900' => 'gra', 'GSVIVG01005450001' => 'vvi', 'GSVIVG01016232001' => 'vvi', 'GSVIVG01026157001' => 'vvi', 'GSVIVG01027419001' => 'vvi', 'GSVIVG01027631001' => 'vvi', 'GSVIVG01034143001' => 'vvi', 'HanXRQChr03g0093921' => 'han', 'HanXRQChr04g0120001' => 'han', 'HanXRQChr04g0122561' => 'han', 'HanXRQChr09g0246851' => 'han', 'HanXRQChr10g0293311' => 'han', 'HanXRQChr13g0425231' => 'han', 'HanXRQChr16g0532571' => 'han', 'Haze_09050' => 'cav', 'Haze_15715' => 'cav', 'Haze_15716' => 'cav', 'Haze_16803' => 'cav', 'Haze_16850' => 'cav', 'Hma1.2p1_0301F.1_g118655' => 'hma', 'Hma1.2p1_0309F.1_g120590' => 'hma', 'Hma1.2p1_0936F.1_g238900' => 'hma', 'Hma1.2p1_3552F.1_g336740' => 'hma', 'HPP92_003520' => 'vpl', 'HPP92_006628' => 'vpl', 'HPP92_006645' => 'vpl', 'HPP92_014669' => 'vpl', 'HPP92_015077' => 'vpl', 'Hund16742' => 'sun', 'Hund17022' => 'sun', 'Lalb_Chr02g0152131' => 'lal', 'Lalb_Chr05g0225371' => 'lal', 'Lalb_Chr07g0189841' => 'lal', 'Lalb_Chr07g0192961' => 'lal', 'Lalb_Chr12g0208221' => 'lal', 'Lalb_Chr13g0291211' => 'lal', 'Lalb_Chr13g0291781' => 'lal', 'Lalb_Chr18g0044651' => 'lal', 'Lalb_Chr21g0313731' => 'lal', 'Lj1g0022533' => 'lja', 'Lj2A18T50' => 'lonja', 'Lj2A92G93' => 'lonja', 'Lj3A965T73' => 'lonja', 'Lj3g0000673' => 'lja', 'Lj3g0002666' => 'lja', 'Lj4g0016985' => 'lja', 'Lj5g0003625' => 'lja', 'Lj7A529G36' => 'lonja', 'Lj9A569T49' => 'lonja', 'Lj9A604T63' => 'lonja', 'Lsat_1_v5_gn_3_132060' => 'lsa', 'Lsat_1_v5_gn_4_68941' => 'lsa', 'Lsat_1_v5_gn_5_95580' => 'lsa', 'Lsat_1_v5_gn_7_161' => 'lsa', 'Lsat_1_v5_gn_7_7041' => 'lsa', 'Lsat_1_v5_gn_9_33481' => 'lsa', 'Lsat_1_v5_gn_9_68260' => 'lsa', 'Manes.01G073100' => 'mes', 'Manes.01G266300' => 'mes', 'Manes.02G033300' => 'mes', 'Manes.05G017900' => 'mes', 'Manes.05G046100' => 'mes', 'Manes.08G080900' => 'mes', 'Manes.10G049400' => 'mes', 'Mapoly0009s0186' => 'mpo', 'Mapoly0036s0118' => 'mpo', 'Mapoly0101s0046' => 'mpo', 'MBI04_g30218_MAGBIO' => 'mbi', 'MBI04_g35564_MAGBIO' => 'mbi', 'MBI12_g34011_MAGBIO' => 'mbi', 'MBI14_g04655_MAGBIO' => 'mbi', 'MCO07G653' => 'mco', 'MCO10G173' => 'mco', 'MD01G1087100' => 'mdo', 'MD01G1104200' => 'mdo', 'MD02G1205100' => 'mdo', 'MD04G1079200' => 'mdo', 'MD04G1131400' => 'mdo', 'MD07G1121600' => 'mdo', 'MD07G1157300' => 'mdo', 'MD07G1171000' => 'mdo', 'MD12G1144500' => 'mdo', 'Medtr1g094610' => 'mtr', 'Medtr4g021795' => 'mtr', 'Medtr4g023760' => 'mtr', 'Medtr7g118050' => 'mtr', 'MELO3C005582.2' => 'cme', 'MELO3C005989.2' => 'cme', 'MELO3C006192.2' => 'cme', 'MELO3C009248.2' => 'cme', 'MELO3C019817.2' => 'cme', 'Migut.B01625' => 'egut', 'Migut.B01915' => 'egut', 'Migut.F01721' => 'egut', 'Migut.J00314' => 'egut', 'MSTRG.20742' => 'ama', 'MSTRG.8134' => 'ama', 'Nitab4.5_0000096g0010' => 'nta', 'Nitab4.5_0000202g0030' => 'nta', 'Nitab4.5_0000216g0370' => 'nta', 'Nitab4.5_0000457g0230' => 'nta', 'Nitab4.5_0001702g0170' => 'nta', 'Nitab4.5_0003607g0010' => 'nta', 'Nitab4.5_0004917g0020' => 'nta', 'Nitab4.5_0007059g0010' => 'nta', 'Nitab4.5_0007184g0010' => 'nta', 'Nitab4.5_0007346g0020' => 'nta', 'Nn1g00410' => 'nnu', 'Nn1g01252' => 'nnu', 'Nn2g11168' => 'nnu', 'Nn2g13403' => 'nnu', 'Nn2g13760' => 'nnu', 'Nn4g26380' => 'nnu', 'Oeu000806.2' => 'oeu', 'Oeu005788.1' => 'oeu', 'Oeu006900.3' => 'oeu', 'Oeu007797.1' => 'oeu', 'Oeu011932.1' => 'oeu', 'Oeu022739.1' => 'oeu', 'Oeu037918.1' => 'oeu', 'Oeu055490.2' => 'oeu', 'Os01g0844400' => 'osa', 'Os02g0819100' => 'osa', 'Os03g0804300' => 'osa', 'Os05g0458000' => 'osa', 'Os07g0467800' => 'osa', 'Os12g0602200' => 'osa', 'Peaxi162Scf00013g03444' => 'pax', 'Peaxi162Scf00094g01120' => 'pax', 'Peaxi162Scf00191g01211' => 'pax', 'Peaxi162Scf00238g01110' => 'pax', 'Peaxi162Scf00330g00719' => 'pax', 'Peaxi162Scf00627g00018' => 'pax', 'PGR031G2686' => 'pgr', 'PGR042G0809' => 'pgr', 'PGR142G0193' => 'pgr', 'PGSC0003DMG400011066' => 'stu', 'PGSC0003DMG400012041' => 'stu', 'PGSC0003DMG400013678' => 'stu', 'PGSC0003DMG400023477' => 'stu', 'PGSC0003DMG400025956' => 'stu', 'PGSC0003DMG401019151' => 'stu', 'Phvul.006G116400' => 'pvu', 'Phvul.007G097300' => 'pvu', 'Phvul.010G015000' => 'pvu', 'Phvul.010G083900' => 'pvu', 'Potri.001G117100' => 'ptr', 'Potri.002G147300' => 'ptr', 'Potri.003G115600' => 'ptr', 'Potri.006G087400' => 'ptr', 'Potri.010G226100' => 'ptr', 'Potri.014G069200' => 'ptr', 'Potri.014G104000' => 'ptr', 'Potri.016G100200' => 'ptr', 'Pp3c10_20450' => 'ppa', 'Pp3c1_42400' => 'ppa', 'Pp3c3_24390' => 'ppa', 'Pp3c3_2860' => 'ppa', 'PRCOL_00003193' => 'pco', 'Prupe.2G144500' => 'ppe', 'Prupe.2G195700' => 'ppe', 'Prupe.2G209800' => 'ppe', 'Prupe.5G080000' => 'ppe', 'Prupe.6G257900' => 'ppe', 'Psat3g001160' => 'psa', 'Psat6g181880' => 'psa', 'Psat7g233720' => 'psa', 'PSO063G7587' => 'pso', 'PSO339G2145' => 'pso', 'PSO339G3369' => 'pso', 'PSO478G2747' => 'pso', 'PSO513G0140' => 'pso', 'PSO782G1614' => 'pso', 'PSO782G4889' => 'pso', 'PSO782G5485' => 'pso', 'PSO801G0241' => 'pso', 'QL07p048854' => 'qlo', 'QL08p046745' => 'qlo', 'QL08p052606' => 'qlo', 'QL08p053414' => 'qlo', 'QL08p054868' => 'qlo', 'RcHm_v2.0_Chr1g0350251' => 'rch', 'RcHm_v2.0_Chr1g0360851' => 'rch', 'RcHm_v2.0_Chr1g0362791' => 'rch', 'RcHm_v2.0_Chr3g0466281' => 'rch', 'RcHm_v2.0_Chr7g0201481' => 'rch', 'Rhsim01G0148600' => 'rsi', 'Rhsim05G0194400' => 'rsi', 'Rhsim07G0000700' => 'rsi', 'Rhsim07G0000800' => 'rsi', 'Rhsim07G0027900' => 'rsi', 'Rhsim09G0149500' => 'rsi', 'RhsimUnG0186900' => 'rsi', 'Sabra01G0089900' => 'sbr', 'Sabra02G0114700' => 'sbr', 'Sabra02G0116300' => 'sbr', 'Sabra03G0080100' => 'sbr', 'Sabra08G0024300' => 'sbr', 'Sabra10G0174300' => 'sbr', 'Sabra14G0048900' => 'sbr', 'Sabra14G0076500' => 'sbr', 'SalBow5G2513' => 'sbo', 'Sc01g0002300' => 'sci', 'Sc01g0004450' => 'sci', 'Sc06g0001680' => 'sci', 'Sc23g0003580' => 'sci', 'Sed0000913' => 'sed', 'Sed0001655' => 'sed', 'Sed0007745' => 'sed', 'Sed0010951' => 'sed', 'Sed0017599' => 'sed', 'Sed0021405' => 'sed', 'Sed0022810' => 'sed', 'SEGI_07099' => 'sgi', 'SEGI_11931' => 'sgi', 'SEGI_13187' => 'sgi', 'SEGI_29958' => 'sgi', 'SEGI_36351' => 'sgi', 'SGA_v2.0_scaffold126G33770' => 'sas', 'SGA_v2.0_scaffold153G37003' => 'sas', 'SGA_v2.0_scaffold2G01359' => 'sas', 'SGA_v2.0_scaffold5G03064' => 'sas', 'SGA_v2.0_scaffold95G28903' => 'sas', 'SHI12701' => 'shi', 'SHI26410' => 'shi', 'SHI38997' => 'shi', 'SHI53759' => 'shi', 'SHI53886' => 'shi', 'SHI54714' => 'shi', 'SMO011G0041' => 'smo', 'SMO146G0251' => 'smo', 'SMO160G0004' => 'smo', 'SMO174G0057' => 'smo', 'SMO244G0089' => 'smo', 'SMO296G0011' => 'smo', 'Solyc01g091280.3' => 'sly', 'Solyc05g047610.3' => 'sly', 'Solyc05g047640.3' => 'sly', 'Solyc05g055630.3' => 'sly', 'Solyc10g018160.2' => 'sly', 'Solyc10g084820.2' => 'sly', 'Solyc10g086565.2' => 'sly', 'Sopen01g037030' => 'spe', 'Sopen05g027920' => 'spe', 'Sopen05g034070' => 'spe', 'Sopen10g007260' => 'spe', 'Sopen10g034260' => 'spe', 'Sopen10g035950' => 'spe', 'Sp3g07710' => 'spa', 'Sp4g27420' => 'spa', 'Sp5g02450' => 'spa', 'Sp6g01280' => 'spa', 'Sp6g38480' => 'spa', 'Sp7g20780' => 'spa', 'TAR374G1413' => 'tar', 'TAR623G1777' => 'tar', 'TAR629G2370' => 'tar', 'TAR633G1759' => 'tar', 'TAR636G3387' => 'tar', 'THA.LOC104802447' => 'tha', 'THA.LOC104813916' => 'tha', 'THA.LOC104816423' => 'tha', 'THA.LOC104817246' => 'tha', 'THA.LOC104825895' => 'tha', 'Thecc.01G335200' => 'tca', 'Thecc.01G377400' => 'tca', 'Thecc.03G262200' => 'tca', 'Thecc.05G036800' => 'tca', 'Thecc.10G080500' => 'tca', 'Thecc.10G080800' => 'tca', 'Thhalv10001560m.g' => 'esa', 'Thhalv10006120m.g' => 'esa', 'Thhalv10014375m.g' => 'esa', 'Thhalv10021264m.g' => 'esa', 'Thhalv10028856m.g' => 'esa', 'TPR.G1914' => 'tpr', 'TPR.G4757' => 'tpr', 'TPR.G5595' => 'tpr', 'TWI14G0952' => 'twi', 'TWI14G1307' => 'twi', 'TWI38G2143' => 'twi', 'TWI59G0826' => 'twi', 'TWI77G0527' => 'twi', 'TWI81G0150' => 'twi', 'unitig_21.g21018' => 'ugi', 'unitig_26.g9725' => 'ugi', 'unitig_744.g24653' => 'ugi', 'unitig_749.g13778' => 'ugi', 'unitig_899.g15035' => 'ugi', 'vmacro04296' => 'vma', 'vmacro04852' => 'vma', 'vmacro13404' => 'vma', 'vmacro20169' => 'vma', 'vmacro21014' => 'vma', 'VMungo0331G0237' => 'vmu', 'VMungo0331G0706' => 'vmu', 'VMungo0331G1361' => 'vmu', 'VMungo0331G1489' => 'vmu', 'VMungo0540G1037' => 'vmu', 'VMungo0720G2487' => 'vmu', 'VMungo0720G2721' => 'vmu', 'Zm00001eb086860' => 'zma', 'Zm00001eb104760' => 'zma', 'Zm00001eb148220' => 'zma', 'Zm00001eb259030' => 'zma', 'Zm00001eb289590' => 'zma', 'Zm00001eb420150' => 'zma' ) $gf_id = 'HOM05D000968' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000968' ) $data_identifier = 'HOM05D000968' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 19, 'bol' => (int) 9, 'bra' => (int) 12, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 5, 'ccan' => (int) 7, 'cde' => (int) 5, 'cfa' => (int) 8, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 4, 'dca' => (int) 5, 'din' => (int) 5, 'dzi' => (int) 12, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 25, 'fve' => (int) 5, 'gma' => (int) 9, 'ghi' => (int) 18, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 7, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 5, 'sun' => (int) 2, 'lal' => (int) 9, 'lja' => (int) 5, 'lonja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 9, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 2, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 3, 'stu' => (int) 6, 'pvu' => (int) 4, 'ptr' => (int) 8, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 3, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 1, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 5, 'sas' => (int) 5, 'shi' => (int) 6, 'smo' => (int) 6, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 3, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420150' $species_info = array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ) $local_species = 'bca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000968', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p31690' => 'bna', 'A03p36040' => 'bna', 'A03p53730' => 'bna', 'A04p01410' => 'bna', 'A05p05420' => 'bna', 'A05p39630' => 'bna', 'A05p39640' => 'bna', 'A09p00970' => 'bna', 'A09p53060' => 'bna', 'A10p31890' => 'bna', 'Aa31LG10G15040' => 'aar', 'Aa31LG1G21090' => 'aar', 'Aa31LG1G26900' => 'aar', 'Aa31LG3G1820' => 'aar', 'Aa31LG5G1100' => 'aar', 'Aa31LG6G4740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2265' => 'aag', 'Actinidia07998' => 'ach', 'Actinidia11266' => 'ach', 'Actinidia12682' => 'ach', 'Actinidia26479' => 'ach', 'Actinidia31406' => 'ach', 'Actinidia32437' => 'ach', 'Actinidia38862' => 'ach', 'Ah.05g174230' => 'amhyb', 'Ah.05g179070' => 'amhyb', 'Ah.05g179090' => 'amhyb', 'Ah.12g059950' => 'amhyb', 'AL3G20480' => 'aly', 'AL4G44520' => 'aly', 'AL5G43110' => 'aly', 'AL6G13890' => 'aly', 'AL6G52620' => 'aly', 'AL7G30830' => 'aly', 'Aqoxy1G00899' => 'aox', 'Aqoxy5G04333' => 'aox', 'Aqoxy7G00641' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3IZ0NN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4EF6AW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W9P8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79GA3M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C43NQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFCU6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G95YVJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCHK29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LU1UG8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX91RN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGB4B1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8DA0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9H7JI' => 'arhy', 'AT3G09320' => 'ath', 'AT3G60800' => 'ath', 'AT4G00840' => 'ath', 'AT4G22750' => 'ath', 'AT5G04270' => 'ath', 'ATR0090G003' => 'atr', 'ATR0559G349' => 'atr', 'ATR0680G261' => 'atr', 'ATR0810G048' => 'atr', 'Atru.chr12.831' => 'acertr', 'Atru.chr5.303' => 'acertr', 'Atru.chr5.748' => 'acertr', 'Atru.chr8.1999' => 'acertr', 'Atru.chr9.1436' => 'acertr', 'AUR62004211' => 'cqu', 'AUR62004548' => 'cqu', 'AUR62013637' => 'cqu', 'AUR62022662' => 'cqu', 'AUR62025777' => 'cqu', 'AUR62042386' => 'cqu', 'BcaB01g02310' => 'bca', 'BcaB01g06062' => 'bca', 'BcaB02g08975' => 'bca', 'BcaB02g08980' => 'bca', 'BcaC01g04228' => 'bca', 'BcaC01g06830' => 'bca', 'BcaC02g10186' => 'bca', 'BcaC02g12214' => 'bca', 'BcaC04g24101' => 'bca', 'BcaC05g29520' => 'bca', 'BcaC05g29661' => 'bca', 'BcaC06g32130' => 'bca', 'BcaC06g32131' => 'bca', 'BcaC07g40601' => 'bca', 'BcaC07g42641' => 'bca', 'BcaNung01038' => 'bca', 'BcaNung01676' => 'bca', 'BcaNung02480' => 'bca', 'BcaNung07376' => 'bca', 'BolC3t16146H' => 'bol', 'BolC3t16637H' => 'bol', 'BolC4t22257H' => 'bol', 'BolC4t24728H' => 'bol', 'BolC5t34517H' => 'bol', 'BolC7t45703H' => 'bol', 'BolC8t51166H' => 'bol', 'BolC9t53038H' => 'bol', 'BolC9t60000H' => 'bol', 'BraA01t01345Z' => 'bra', 'BraA01t01346Z' => 'bra', 'BraA01t01348Z' => 'bra', 'BraA03t12347Z' => 'bra', 'BraA03t12775Z' => 'bra', 'BraA03t14439Z' => 'bra', 'BraA04t15860Z' => 'bra', 'BraA05t19511Z' => 'bra', 'BraA05t22746Z' => 'bra', 'BraA09t35767Z' => 'bra', 'BraA09t40732Z' => 'bra', 'BraA10t45233Z' => 'bra', 'C03p38720' => 'bna', 'C03p43680' => 'bna', 'C04p06350' => 'bna', 'C04p31800' => 'bna', 'C05p58680' => 'bna', 'C07p52110' => 'bna', 'C08p35760' => 'bna', 'C09p01050' => 'bna', 'C09p72600' => 'bna', 'CAN.G106.2' => 'can', 'CAN.G1482.1' => 'can', 'CAN.G324.12' => 'can', 'CAN.G388.20' => 'can', 'CAN.G412.7' => 'can', 'CAN.G694.32' => 'can', 'CAN.G92.12' => 'can', 'CANSAT11G2353' => 'cansat', 'CANSAT21G1398' => 'cansat', 'CANSAT56G2456' => 'cansat', 'CANSAT56G3031' => 'cansat', 'CANSAT56G4539' => 'cansat', 'CARHR083680' => 'chi', 'CARHR171190' => 'chi', 'CARHR209010' => 'chi', 'CARHR229680' => 'chi', 'CARHR249490' => 'chi', 'Carub.0003s0844' => 'cru', 'Carub.0005s2755' => 'cru', 'Carub.0006s0322' => 'cru', 'Carub.0006s3586' => 'cru', 'Carub.0007s1855' => 'cru', 'Ca_07808_v3' => 'car', 'Ca_09535_v3' => 'car', 'Ca_10548_v3' => 'car', 'Ca_19913_v3' => 'car', 'Ca_19916_v3' => 'car', 'Ca_19975_v3' => 'car', 'CBR_g22876' => 'cbr', 'CBR_g22879' => 'cbr', 'CBR_g38491' => 'cbr', 'CBR_g54185' => 'cbr', 'CBR_g54190' => 'cbr', 'Cc02_g11020' => 'ccan', 'Cc02_g23920' => 'ccan', 'Cc02_g39860' => 'ccan', 'Cc02_g39870' => 'ccan', 'Cc03_g06760' => 'ccan', 'Cc06_g02450' => 'ccan', 'Cc09_g09450' => 'ccan', 'CDE02G1959' => 'cde', 'CDE04G0600' => 'cde', 'CDE07G1996' => 'cde', 'CDE07G2078' => 'cde', 'CDE11G0611' => 'cde', 'Cfa001683' => 'cfa', 'Cfa001734' => 'cfa', 'Cfa001737' => 'cfa', 'Cfa003751' => 'cfa', 'Cfa012019' => 'cfa', 'Cfa017353' => 'cfa', 'Cfa017732' => 'cfa', 'Cfa022464' => 'cfa', 'Ciclev10012400m.g' => 'ccl', 'Ciclev10021242m.g' => 'ccl', 'Ciclev10021302m.g' => 'ccl', 'Ciclev10021463m.g' => 'ccl', 'Ciclev10032359m.g' => 'ccl', 'CiPaw.01G081000' => 'cil', 'CiPaw.01G262500' => 'cil', 'CiPaw.01G269800' => 'cil', 'CiPaw.02G168400' => 'cil', 'CiPaw.05G119500' => 'cil', 'CiPaw.11G147300' => 'cil', 'ClCG01G003630' => 'cla', 'ClCG05G000510' => 'cla', 'ClCG05G002300' => 'cla', 'ClCG08G007650' => 'cla', 'ClCG10G021250' => 'cla', 'COL.COLO4_06218' => 'col', 'COL.COLO4_12538' => 'col', 'COL.COLO4_14775' => 'col', 'COL.COLO4_23875' => 'col', 'Cpa.g.sc141.16' => 'cpa', 'Cpa.g.sc169.16' => 'cpa', 'Cpa.g.sc244.4' => 'cpa', 'Cpa.g.sc244.5' => 'cpa', 'Cpa.g.sc29.87' => 'cpa', 'Cpa.g.sc53.115' => 'cpa', 'Cre03.g207502' => 'cre', 'Cre06.g277000' => 'cre', 'Cre09.g394050' => 'cre', 'CsaV3_3G007680' => 'csa', 'CsaV3_3G009710' => 'csa', 'CsaV3_3G034790' => 'csa', 'CsaV3_5G003750' => 'csa', 'CsaV3_6G036620' => 'csa', 'CSS0002288' => 'camsi', 'CSS0011250' => 'camsi', 'CSS0021619' => 'camsi', 'CSS0046701' => 'camsi', 'DCAR_006420' => 'dca', 'DCAR_006865' => 'dca', 'DCAR_008558' => 'dca', 'DCAR_028754' => 'dca', 'DCAR_028755' => 'dca', 'Dinv31218' => 'din', 'Dinv32371' => 'din', 'Dinv34250' => 'din', 'Dinv37156' => 'din', 'Dinv43704' => 'din', 'Duzib093G1811' => 'dzi', 'Duzib106G1622' => 'dzi', 'Duzib114G0504' => 'dzi', 'Duzib128G0338' => 'dzi', 'Duzib128G1577' => 'dzi', 'Duzib133G0104' => 'dzi', 'Duzib133G1080' => 'dzi', 'Duzib138G0324' => 'dzi', 'Duzib138G0394' => 'dzi', 'Duzib205G0122' => 'dzi', 'Duzib268G1020' => 'dzi', 'Duzib268G1359' => 'dzi', 'ECA232G3929' => 'eca', 'ECA236G2210' => 'eca', 'ECA236G2287' => 'eca', 'ECA240G4568' => 'eca', 'ECA247G0894' => 'eca', 'EL10Ac1g00200' => 'bvu', 'EL10Ac1g00886' => 'bvu', 'EL10As1g23091' => 'bvu', 'EL10As1g23092' => 'bvu', 'Eucgr.A01284' => 'egr', 'Eucgr.A01285' => 'egr', 'Eucgr.D02456' => 'egr', 'Eucgr.E00018' => 'egr', 'Eucgr.E01439' => 'egr', 'Eucgr.G02859' => 'egr', 'FAN01G0168' => 'fan', 'FAN01G0453' => 'fan', 'FAN01G2761' => 'fan', 'FAN02G1239' => 'fan', 'FAN03G0645' => 'fan', 'FAN03G2707' => 'fan', 'FAN03G2978' => 'fan', 'FAN04G0227' => 'fan', 'FAN06G0091' => 'fan', 'FAN06G1418' => 'fan', 'FAN06G1512' => 'fan', 'FAN06G1986' => 'fan', 'FAN06G2905' => 'fan', 'FAN06G4325' => 'fan', 'FAN08G0033' => 'fan', 'FAN09G0642' => 'fan', 'FAN10G1763' => 'fan', 'FAN10G2026' => 'fan', 'FAN10G2513' => 'fan', 'FAN10G3402' => 'fan', 'FAN10G3564' => 'fan', 'FAN10G3987' => 'fan', 'FAN13G1490' => 'fan', 'FAN14G5857' => 'fan', 'FAN18G1188' => 'fan', 'FvH4_5g00750' => 'fve', 'FvH4_6g13410' => 'fve', 'FvH4_7g11740' => 'fve', 'FvH4_7g17410' => 'fve', 'FvH4_7g18860' => 'fve', 'Glyma.01G099100' => 'gma', 'Glyma.01G142300' => 'gma', 'Glyma.03G025500' => 'gma', 'Glyma.03G069700' => 'gma', 'Glyma.03G260000' => 'gma', 'Glyma.09G269800' => 'gma', 'Glyma.10G208700' => 'gma', 'Glyma.18G220400' => 'gma', 'Glyma.20G182000' => 'gma', 'Gohir.A01G221726' => 'ghi', 'Gohir.A07G134600' => 'ghi', 'Gohir.A07G146000' => 'ghi', 'Gohir.A08G173900' => 'ghi', 'Gohir.A09G194900' => 'ghi', 'Gohir.A10G204100' => 'ghi', 'Gohir.A11G080600' => 'ghi', 'Gohir.A11G327500' => 'ghi', 'Gohir.A12G101800' => 'ghi', 'Gohir.D01G211200' => 'ghi', 'Gohir.D07G139200' => 'ghi', 'Gohir.D07G152100' => 'ghi', 'Gohir.D08G192600' => 'ghi', 'Gohir.D09G189200' => 'ghi', 'Gohir.D10G212000' => 'ghi', 'Gohir.D11G085200' => 'ghi', 'Gohir.D11G346400' => 'ghi', 'Gohir.D12G104800' => 'ghi', 'Gorai.001G151300' => 'gra', 'Gorai.001G174100' => 'gra', 'Gorai.002G257000' => 'gra', 'Gorai.004G202600' => 'gra', 'Gorai.007G090900' => 'gra', 'Gorai.007G376700' => 'gra', 'Gorai.008G114100' => 'gra', 'Gorai.011G237900' => 'gra', 'GSVIVG01005450001' => 'vvi', 'GSVIVG01016232001' => 'vvi', 'GSVIVG01026157001' => 'vvi', 'GSVIVG01027419001' => 'vvi', 'GSVIVG01027631001' => 'vvi', 'GSVIVG01034143001' => 'vvi', 'HanXRQChr03g0093921' => 'han', 'HanXRQChr04g0120001' => 'han', 'HanXRQChr04g0122561' => 'han', 'HanXRQChr09g0246851' => 'han', 'HanXRQChr10g0293311' => 'han', 'HanXRQChr13g0425231' => 'han', 'HanXRQChr16g0532571' => 'han', 'Haze_09050' => 'cav', 'Haze_15715' => 'cav', 'Haze_15716' => 'cav', 'Haze_16803' => 'cav', 'Haze_16850' => 'cav', 'Hma1.2p1_0301F.1_g118655' => 'hma', 'Hma1.2p1_0309F.1_g120590' => 'hma', 'Hma1.2p1_0936F.1_g238900' => 'hma', 'Hma1.2p1_3552F.1_g336740' => 'hma', 'HPP92_003520' => 'vpl', 'HPP92_006628' => 'vpl', 'HPP92_006645' => 'vpl', 'HPP92_014669' => 'vpl', 'HPP92_015077' => 'vpl', 'Hund16742' => 'sun', 'Hund17022' => 'sun', 'Lalb_Chr02g0152131' => 'lal', 'Lalb_Chr05g0225371' => 'lal', 'Lalb_Chr07g0189841' => 'lal', 'Lalb_Chr07g0192961' => 'lal', 'Lalb_Chr12g0208221' => 'lal', 'Lalb_Chr13g0291211' => 'lal', 'Lalb_Chr13g0291781' => 'lal', 'Lalb_Chr18g0044651' => 'lal', 'Lalb_Chr21g0313731' => 'lal', 'Lj1g0022533' => 'lja', 'Lj2A18T50' => 'lonja', 'Lj2A92G93' => 'lonja', 'Lj3A965T73' => 'lonja', 'Lj3g0000673' => 'lja', 'Lj3g0002666' => 'lja', 'Lj4g0016985' => 'lja', 'Lj5g0003625' => 'lja', 'Lj7A529G36' => 'lonja', 'Lj9A569T49' => 'lonja', 'Lj9A604T63' => 'lonja', 'Lsat_1_v5_gn_3_132060' => 'lsa', 'Lsat_1_v5_gn_4_68941' => 'lsa', 'Lsat_1_v5_gn_5_95580' => 'lsa', 'Lsat_1_v5_gn_7_161' => 'lsa', 'Lsat_1_v5_gn_7_7041' => 'lsa', 'Lsat_1_v5_gn_9_33481' => 'lsa', 'Lsat_1_v5_gn_9_68260' => 'lsa', 'Manes.01G073100' => 'mes', 'Manes.01G266300' => 'mes', 'Manes.02G033300' => 'mes', 'Manes.05G017900' => 'mes', 'Manes.05G046100' => 'mes', 'Manes.08G080900' => 'mes', 'Manes.10G049400' => 'mes', 'Mapoly0009s0186' => 'mpo', 'Mapoly0036s0118' => 'mpo', 'Mapoly0101s0046' => 'mpo', 'MBI04_g30218_MAGBIO' => 'mbi', 'MBI04_g35564_MAGBIO' => 'mbi', 'MBI12_g34011_MAGBIO' => 'mbi', 'MBI14_g04655_MAGBIO' => 'mbi', 'MCO07G653' => 'mco', 'MCO10G173' => 'mco', 'MD01G1087100' => 'mdo', 'MD01G1104200' => 'mdo', 'MD02G1205100' => 'mdo', 'MD04G1079200' => 'mdo', 'MD04G1131400' => 'mdo', 'MD07G1121600' => 'mdo', 'MD07G1157300' => 'mdo', 'MD07G1171000' => 'mdo', 'MD12G1144500' => 'mdo', 'Medtr1g094610' => 'mtr', 'Medtr4g021795' => 'mtr', 'Medtr4g023760' => 'mtr', 'Medtr7g118050' => 'mtr', 'MELO3C005582.2' => 'cme', 'MELO3C005989.2' => 'cme', 'MELO3C006192.2' => 'cme', 'MELO3C009248.2' => 'cme', 'MELO3C019817.2' => 'cme', 'Migut.B01625' => 'egut', 'Migut.B01915' => 'egut', 'Migut.F01721' => 'egut', 'Migut.J00314' => 'egut', 'MSTRG.20742' => 'ama', 'MSTRG.8134' => 'ama', 'Nitab4.5_0000096g0010' => 'nta', 'Nitab4.5_0000202g0030' => 'nta', 'Nitab4.5_0000216g0370' => 'nta', 'Nitab4.5_0000457g0230' => 'nta', 'Nitab4.5_0001702g0170' => 'nta', 'Nitab4.5_0003607g0010' => 'nta', 'Nitab4.5_0004917g0020' => 'nta', 'Nitab4.5_0007059g0010' => 'nta', 'Nitab4.5_0007184g0010' => 'nta', 'Nitab4.5_0007346g0020' => 'nta', 'Nn1g00410' => 'nnu', 'Nn1g01252' => 'nnu', 'Nn2g11168' => 'nnu', 'Nn2g13403' => 'nnu', 'Nn2g13760' => 'nnu', 'Nn4g26380' => 'nnu', 'Oeu000806.2' => 'oeu', 'Oeu005788.1' => 'oeu', 'Oeu006900.3' => 'oeu', 'Oeu007797.1' => 'oeu', 'Oeu011932.1' => 'oeu', 'Oeu022739.1' => 'oeu', 'Oeu037918.1' => 'oeu', 'Oeu055490.2' => 'oeu', 'Os01g0844400' => 'osa', 'Os02g0819100' => 'osa', 'Os03g0804300' => 'osa', 'Os05g0458000' => 'osa', 'Os07g0467800' => 'osa', 'Os12g0602200' => 'osa', 'Peaxi162Scf00013g03444' => 'pax', 'Peaxi162Scf00094g01120' => 'pax', 'Peaxi162Scf00191g01211' => 'pax', 'Peaxi162Scf00238g01110' => 'pax', 'Peaxi162Scf00330g00719' => 'pax', 'Peaxi162Scf00627g00018' => 'pax', 'PGR031G2686' => 'pgr', 'PGR042G0809' => 'pgr', 'PGR142G0193' => 'pgr', 'PGSC0003DMG400011066' => 'stu', 'PGSC0003DMG400012041' => 'stu', 'PGSC0003DMG400013678' => 'stu', 'PGSC0003DMG400023477' => 'stu', 'PGSC0003DMG400025956' => 'stu', 'PGSC0003DMG401019151' => 'stu', 'Phvul.006G116400' => 'pvu', 'Phvul.007G097300' => 'pvu', 'Phvul.010G015000' => 'pvu', 'Phvul.010G083900' => 'pvu', 'Potri.001G117100' => 'ptr', 'Potri.002G147300' => 'ptr', 'Potri.003G115600' => 'ptr', 'Potri.006G087400' => 'ptr', 'Potri.010G226100' => 'ptr', 'Potri.014G069200' => 'ptr', 'Potri.014G104000' => 'ptr', 'Potri.016G100200' => 'ptr', 'Pp3c10_20450' => 'ppa', 'Pp3c1_42400' => 'ppa', 'Pp3c3_24390' => 'ppa', 'Pp3c3_2860' => 'ppa', 'PRCOL_00003193' => 'pco', 'Prupe.2G144500' => 'ppe', 'Prupe.2G195700' => 'ppe', 'Prupe.2G209800' => 'ppe', 'Prupe.5G080000' => 'ppe', 'Prupe.6G257900' => 'ppe', 'Psat3g001160' => 'psa', 'Psat6g181880' => 'psa', 'Psat7g233720' => 'psa', 'PSO063G7587' => 'pso', 'PSO339G2145' => 'pso', 'PSO339G3369' => 'pso', 'PSO478G2747' => 'pso', 'PSO513G0140' => 'pso', 'PSO782G1614' => 'pso', 'PSO782G4889' => 'pso', 'PSO782G5485' => 'pso', 'PSO801G0241' => 'pso', 'QL07p048854' => 'qlo', 'QL08p046745' => 'qlo', 'QL08p052606' => 'qlo', 'QL08p053414' => 'qlo', 'QL08p054868' => 'qlo', 'RcHm_v2.0_Chr1g0350251' => 'rch', 'RcHm_v2.0_Chr1g0360851' => 'rch', 'RcHm_v2.0_Chr1g0362791' => 'rch', 'RcHm_v2.0_Chr3g0466281' => 'rch', 'RcHm_v2.0_Chr7g0201481' => 'rch', 'Rhsim01G0148600' => 'rsi', 'Rhsim05G0194400' => 'rsi', 'Rhsim07G0000700' => 'rsi', 'Rhsim07G0000800' => 'rsi', 'Rhsim07G0027900' => 'rsi', 'Rhsim09G0149500' => 'rsi', 'RhsimUnG0186900' => 'rsi', 'Sabra01G0089900' => 'sbr', 'Sabra02G0114700' => 'sbr', 'Sabra02G0116300' => 'sbr', 'Sabra03G0080100' => 'sbr', 'Sabra08G0024300' => 'sbr', 'Sabra10G0174300' => 'sbr', 'Sabra14G0048900' => 'sbr', 'Sabra14G0076500' => 'sbr', 'SalBow5G2513' => 'sbo', 'Sc01g0002300' => 'sci', 'Sc01g0004450' => 'sci', 'Sc06g0001680' => 'sci', 'Sc23g0003580' => 'sci', 'Sed0000913' => 'sed', 'Sed0001655' => 'sed', 'Sed0007745' => 'sed', 'Sed0010951' => 'sed', 'Sed0017599' => 'sed', 'Sed0021405' => 'sed', 'Sed0022810' => 'sed', 'SEGI_07099' => 'sgi', 'SEGI_11931' => 'sgi', 'SEGI_13187' => 'sgi', 'SEGI_29958' => 'sgi', 'SEGI_36351' => 'sgi', 'SGA_v2.0_scaffold126G33770' => 'sas', 'SGA_v2.0_scaffold153G37003' => 'sas', 'SGA_v2.0_scaffold2G01359' => 'sas', 'SGA_v2.0_scaffold5G03064' => 'sas', 'SGA_v2.0_scaffold95G28903' => 'sas', 'SHI12701' => 'shi', 'SHI26410' => 'shi', 'SHI38997' => 'shi', 'SHI53759' => 'shi', 'SHI53886' => 'shi', 'SHI54714' => 'shi', 'SMO011G0041' => 'smo', 'SMO146G0251' => 'smo', 'SMO160G0004' => 'smo', 'SMO174G0057' => 'smo', 'SMO244G0089' => 'smo', 'SMO296G0011' => 'smo', 'Solyc01g091280.3' => 'sly', 'Solyc05g047610.3' => 'sly', 'Solyc05g047640.3' => 'sly', 'Solyc05g055630.3' => 'sly', 'Solyc10g018160.2' => 'sly', 'Solyc10g084820.2' => 'sly', 'Solyc10g086565.2' => 'sly', 'Sopen01g037030' => 'spe', 'Sopen05g027920' => 'spe', 'Sopen05g034070' => 'spe', 'Sopen10g007260' => 'spe', 'Sopen10g034260' => 'spe', 'Sopen10g035950' => 'spe', 'Sp3g07710' => 'spa', 'Sp4g27420' => 'spa', 'Sp5g02450' => 'spa', 'Sp6g01280' => 'spa', 'Sp6g38480' => 'spa', 'Sp7g20780' => 'spa', 'TAR374G1413' => 'tar', 'TAR623G1777' => 'tar', 'TAR629G2370' => 'tar', 'TAR633G1759' => 'tar', 'TAR636G3387' => 'tar', 'THA.LOC104802447' => 'tha', 'THA.LOC104813916' => 'tha', 'THA.LOC104816423' => 'tha', 'THA.LOC104817246' => 'tha', 'THA.LOC104825895' => 'tha', 'Thecc.01G335200' => 'tca', 'Thecc.01G377400' => 'tca', 'Thecc.03G262200' => 'tca', 'Thecc.05G036800' => 'tca', 'Thecc.10G080500' => 'tca', 'Thecc.10G080800' => 'tca', 'Thhalv10001560m.g' => 'esa', 'Thhalv10006120m.g' => 'esa', 'Thhalv10014375m.g' => 'esa', 'Thhalv10021264m.g' => 'esa', 'Thhalv10028856m.g' => 'esa', 'TPR.G1914' => 'tpr', 'TPR.G4757' => 'tpr', 'TPR.G5595' => 'tpr', 'TWI14G0952' => 'twi', 'TWI14G1307' => 'twi', 'TWI38G2143' => 'twi', 'TWI59G0826' => 'twi', 'TWI77G0527' => 'twi', 'TWI81G0150' => 'twi', 'unitig_21.g21018' => 'ugi', 'unitig_26.g9725' => 'ugi', 'unitig_744.g24653' => 'ugi', 'unitig_749.g13778' => 'ugi', 'unitig_899.g15035' => 'ugi', 'vmacro04296' => 'vma', 'vmacro04852' => 'vma', 'vmacro13404' => 'vma', 'vmacro20169' => 'vma', 'vmacro21014' => 'vma', 'VMungo0331G0237' => 'vmu', 'VMungo0331G0706' => 'vmu', 'VMungo0331G1361' => 'vmu', 'VMungo0331G1489' => 'vmu', 'VMungo0540G1037' => 'vmu', 'VMungo0720G2487' => 'vmu', 'VMungo0720G2721' => 'vmu', 'Zm00001eb086860' => 'zma', 'Zm00001eb104760' => 'zma', 'Zm00001eb148220' => 'zma', 'Zm00001eb259030' => 'zma', 'Zm00001eb289590' => 'zma', 'Zm00001eb420150' => 'zma' ), 'gf_id' => 'HOM05D000968', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000968' ), 'data_identifier' => 'HOM05D000968', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000968', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p31690' => 'bna', 'A03p36040' => 'bna', 'A03p53730' => 'bna', 'A04p01410' => 'bna', 'A05p05420' => 'bna', 'A05p39630' => 'bna', 'A05p39640' => 'bna', 'A09p00970' => 'bna', 'A09p53060' => 'bna', 'A10p31890' => 'bna', 'Aa31LG10G15040' => 'aar', 'Aa31LG1G21090' => 'aar', 'Aa31LG1G26900' => 'aar', 'Aa31LG3G1820' => 'aar', 'Aa31LG5G1100' => 'aar', 'Aa31LG6G4740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2265' => 'aag', 'Actinidia07998' => 'ach', 'Actinidia11266' => 'ach', 'Actinidia12682' => 'ach', 'Actinidia26479' => 'ach', 'Actinidia31406' => 'ach', 'Actinidia32437' => 'ach', 'Actinidia38862' => 'ach', 'Ah.05g174230' => 'amhyb', 'Ah.05g179070' => 'amhyb', 'Ah.05g179090' => 'amhyb', 'Ah.12g059950' => 'amhyb', 'AL3G20480' => 'aly', 'AL4G44520' => 'aly', 'AL5G43110' => 'aly', 'AL6G13890' => 'aly', 'AL6G52620' => 'aly', 'AL7G30830' => 'aly', 'Aqoxy1G00899' => 'aox', 'Aqoxy5G04333' => 'aox', 'Aqoxy7G00641' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3IZ0NN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4EF6AW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W9P8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79GA3M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C43NQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFCU6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G95YVJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCHK29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LU1UG8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX91RN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGB4B1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8DA0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9H7JI' => 'arhy', 'AT3G09320' => 'ath', 'AT3G60800' => 'ath', 'AT4G00840' => 'ath', 'AT4G22750' => 'ath', 'AT5G04270' => 'ath', 'ATR0090G003' => 'atr', 'ATR0559G349' => 'atr', 'ATR0680G261' => 'atr', 'ATR0810G048' => 'atr', 'Atru.chr12.831' => 'acertr', 'Atru.chr5.303' => 'acertr', 'Atru.chr5.748' => 'acertr', 'Atru.chr8.1999' => 'acertr', 'Atru.chr9.1436' => 'acertr', 'AUR62004211' => 'cqu', 'AUR62004548' => 'cqu', 'AUR62013637' => 'cqu', 'AUR62022662' => 'cqu', 'AUR62025777' => 'cqu', 'AUR62042386' => 'cqu', 'BcaB01g02310' => 'bca', 'BcaB01g06062' => 'bca', 'BcaB02g08975' => 'bca', 'BcaB02g08980' => 'bca', 'BcaC01g04228' => 'bca', 'BcaC01g06830' => 'bca', 'BcaC02g10186' => 'bca', 'BcaC02g12214' => 'bca', 'BcaC04g24101' => 'bca', 'BcaC05g29520' => 'bca', 'BcaC05g29661' => 'bca', 'BcaC06g32130' => 'bca', 'BcaC06g32131' => 'bca', 'BcaC07g40601' => 'bca', 'BcaC07g42641' => 'bca', 'BcaNung01038' => 'bca', 'BcaNung01676' => 'bca', 'BcaNung02480' => 'bca', 'BcaNung07376' => 'bca', 'BolC3t16146H' => 'bol', 'BolC3t16637H' => 'bol', 'BolC4t22257H' => 'bol', 'BolC4t24728H' => 'bol', 'BolC5t34517H' => 'bol', 'BolC7t45703H' => 'bol', 'BolC8t51166H' => 'bol', 'BolC9t53038H' => 'bol', 'BolC9t60000H' => 'bol', 'BraA01t01345Z' => 'bra', 'BraA01t01346Z' => 'bra', 'BraA01t01348Z' => 'bra', 'BraA03t12347Z' => 'bra', 'BraA03t12775Z' => 'bra', 'BraA03t14439Z' => 'bra', 'BraA04t15860Z' => 'bra', 'BraA05t19511Z' => 'bra', 'BraA05t22746Z' => 'bra', 'BraA09t35767Z' => 'bra', 'BraA09t40732Z' => 'bra', 'BraA10t45233Z' => 'bra', 'C03p38720' => 'bna', 'C03p43680' => 'bna', 'C04p06350' => 'bna', 'C04p31800' => 'bna', 'C05p58680' => 'bna', 'C07p52110' => 'bna', 'C08p35760' => 'bna', 'C09p01050' => 'bna', 'C09p72600' => 'bna', 'CAN.G106.2' => 'can', 'CAN.G1482.1' => 'can', 'CAN.G324.12' => 'can', 'CAN.G388.20' => 'can', 'CAN.G412.7' => 'can', 'CAN.G694.32' => 'can', 'CAN.G92.12' => 'can', 'CANSAT11G2353' => 'cansat', 'CANSAT21G1398' => 'cansat', 'CANSAT56G2456' => 'cansat', 'CANSAT56G3031' => 'cansat', 'CANSAT56G4539' => 'cansat', 'CARHR083680' => 'chi', 'CARHR171190' => 'chi', 'CARHR209010' => 'chi', 'CARHR229680' => 'chi', 'CARHR249490' => 'chi', 'Carub.0003s0844' => 'cru', 'Carub.0005s2755' => 'cru', 'Carub.0006s0322' => 'cru', 'Carub.0006s3586' => 'cru', 'Carub.0007s1855' => 'cru', 'Ca_07808_v3' => 'car', 'Ca_09535_v3' => 'car', 'Ca_10548_v3' => 'car', 'Ca_19913_v3' => 'car', 'Ca_19916_v3' => 'car', 'Ca_19975_v3' => 'car', 'CBR_g22876' => 'cbr', 'CBR_g22879' => 'cbr', 'CBR_g38491' => 'cbr', 'CBR_g54185' => 'cbr', 'CBR_g54190' => 'cbr', 'Cc02_g11020' => 'ccan', 'Cc02_g23920' => 'ccan', 'Cc02_g39860' => 'ccan', 'Cc02_g39870' => 'ccan', 'Cc03_g06760' => 'ccan', 'Cc06_g02450' => 'ccan', 'Cc09_g09450' => 'ccan', 'CDE02G1959' => 'cde', 'CDE04G0600' => 'cde', 'CDE07G1996' => 'cde', 'CDE07G2078' => 'cde', 'CDE11G0611' => 'cde', 'Cfa001683' => 'cfa', 'Cfa001734' => 'cfa', 'Cfa001737' => 'cfa', 'Cfa003751' => 'cfa', 'Cfa012019' => 'cfa', 'Cfa017353' => 'cfa', 'Cfa017732' => 'cfa', 'Cfa022464' => 'cfa', 'Ciclev10012400m.g' => 'ccl', 'Ciclev10021242m.g' => 'ccl', 'Ciclev10021302m.g' => 'ccl', 'Ciclev10021463m.g' => 'ccl', 'Ciclev10032359m.g' => 'ccl', 'CiPaw.01G081000' => 'cil', 'CiPaw.01G262500' => 'cil', 'CiPaw.01G269800' => 'cil', 'CiPaw.02G168400' => 'cil', 'CiPaw.05G119500' => 'cil', 'CiPaw.11G147300' => 'cil', 'ClCG01G003630' => 'cla', 'ClCG05G000510' => 'cla', 'ClCG05G002300' => 'cla', 'ClCG08G007650' => 'cla', 'ClCG10G021250' => 'cla', 'COL.COLO4_06218' => 'col', 'COL.COLO4_12538' => 'col', 'COL.COLO4_14775' => 'col', 'COL.COLO4_23875' => 'col', 'Cpa.g.sc141.16' => 'cpa', 'Cpa.g.sc169.16' => 'cpa', 'Cpa.g.sc244.4' => 'cpa', 'Cpa.g.sc244.5' => 'cpa', 'Cpa.g.sc29.87' => 'cpa', 'Cpa.g.sc53.115' => 'cpa', 'Cre03.g207502' => 'cre', 'Cre06.g277000' => 'cre', 'Cre09.g394050' => 'cre', 'CsaV3_3G007680' => 'csa', 'CsaV3_3G009710' => 'csa', 'CsaV3_3G034790' => 'csa', 'CsaV3_5G003750' => 'csa', 'CsaV3_6G036620' => 'csa', 'CSS0002288' => 'camsi', 'CSS0011250' => 'camsi', 'CSS0021619' => 'camsi', 'CSS0046701' => 'camsi', 'DCAR_006420' => 'dca', 'DCAR_006865' => 'dca', 'DCAR_008558' => 'dca', 'DCAR_028754' => 'dca', 'DCAR_028755' => 'dca', 'Dinv31218' => 'din', 'Dinv32371' => 'din', 'Dinv34250' => 'din', 'Dinv37156' => 'din', 'Dinv43704' => 'din', 'Duzib093G1811' => 'dzi', 'Duzib106G1622' => 'dzi', 'Duzib114G0504' => 'dzi', 'Duzib128G0338' => 'dzi', 'Duzib128G1577' => 'dzi', 'Duzib133G0104' => 'dzi', 'Duzib133G1080' => 'dzi', 'Duzib138G0324' => 'dzi', 'Duzib138G0394' => 'dzi', 'Duzib205G0122' => 'dzi', 'Duzib268G1020' => 'dzi', 'Duzib268G1359' => 'dzi', 'ECA232G3929' => 'eca', 'ECA236G2210' => 'eca', 'ECA236G2287' => 'eca', 'ECA240G4568' => 'eca', 'ECA247G0894' => 'eca', 'EL10Ac1g00200' => 'bvu', 'EL10Ac1g00886' => 'bvu', 'EL10As1g23091' => 'bvu', 'EL10As1g23092' => 'bvu', 'Eucgr.A01284' => 'egr', 'Eucgr.A01285' => 'egr', 'Eucgr.D02456' => 'egr', 'Eucgr.E00018' => 'egr', 'Eucgr.E01439' => 'egr', 'Eucgr.G02859' => 'egr', 'FAN01G0168' => 'fan', 'FAN01G0453' => 'fan', 'FAN01G2761' => 'fan', 'FAN02G1239' => 'fan', 'FAN03G0645' => 'fan', 'FAN03G2707' => 'fan', 'FAN03G2978' => 'fan', 'FAN04G0227' => 'fan', 'FAN06G0091' => 'fan', 'FAN06G1418' => 'fan', 'FAN06G1512' => 'fan', 'FAN06G1986' => 'fan', 'FAN06G2905' => 'fan', 'FAN06G4325' => 'fan', 'FAN08G0033' => 'fan', 'FAN09G0642' => 'fan', 'FAN10G1763' => 'fan', 'FAN10G2026' => 'fan', 'FAN10G2513' => 'fan', 'FAN10G3402' => 'fan', 'FAN10G3564' => 'fan', 'FAN10G3987' => 'fan', 'FAN13G1490' => 'fan', 'FAN14G5857' => 'fan', 'FAN18G1188' => 'fan', 'FvH4_5g00750' => 'fve', 'FvH4_6g13410' => 'fve', 'FvH4_7g11740' => 'fve', 'FvH4_7g17410' => 'fve', 'FvH4_7g18860' => 'fve', 'Glyma.01G099100' => 'gma', 'Glyma.01G142300' => 'gma', 'Glyma.03G025500' => 'gma', 'Glyma.03G069700' => 'gma', 'Glyma.03G260000' => 'gma', 'Glyma.09G269800' => 'gma', 'Glyma.10G208700' => 'gma', 'Glyma.18G220400' => 'gma', 'Glyma.20G182000' => 'gma', 'Gohir.A01G221726' => 'ghi', 'Gohir.A07G134600' => 'ghi', 'Gohir.A07G146000' => 'ghi', 'Gohir.A08G173900' => 'ghi', 'Gohir.A09G194900' => 'ghi', 'Gohir.A10G204100' => 'ghi', 'Gohir.A11G080600' => 'ghi', 'Gohir.A11G327500' => 'ghi', 'Gohir.A12G101800' => 'ghi', 'Gohir.D01G211200' => 'ghi', 'Gohir.D07G139200' => 'ghi', 'Gohir.D07G152100' => 'ghi', 'Gohir.D08G192600' => 'ghi', 'Gohir.D09G189200' => 'ghi', 'Gohir.D10G212000' => 'ghi', 'Gohir.D11G085200' => 'ghi', 'Gohir.D11G346400' => 'ghi', 'Gohir.D12G104800' => 'ghi', 'Gorai.001G151300' => 'gra', 'Gorai.001G174100' => 'gra', 'Gorai.002G257000' => 'gra', 'Gorai.004G202600' => 'gra', 'Gorai.007G090900' => 'gra', 'Gorai.007G376700' => 'gra', 'Gorai.008G114100' => 'gra', 'Gorai.011G237900' => 'gra', 'GSVIVG01005450001' => 'vvi', 'GSVIVG01016232001' => 'vvi', 'GSVIVG01026157001' => 'vvi', 'GSVIVG01027419001' => 'vvi', 'GSVIVG01027631001' => 'vvi', 'GSVIVG01034143001' => 'vvi', 'HanXRQChr03g0093921' => 'han', 'HanXRQChr04g0120001' => 'han', 'HanXRQChr04g0122561' => 'han', 'HanXRQChr09g0246851' => 'han', 'HanXRQChr10g0293311' => 'han', 'HanXRQChr13g0425231' => 'han', 'HanXRQChr16g0532571' => 'han', 'Haze_09050' => 'cav', 'Haze_15715' => 'cav', 'Haze_15716' => 'cav', 'Haze_16803' => 'cav', 'Haze_16850' => 'cav', 'Hma1.2p1_0301F.1_g118655' => 'hma', 'Hma1.2p1_0309F.1_g120590' => 'hma', 'Hma1.2p1_0936F.1_g238900' => 'hma', 'Hma1.2p1_3552F.1_g336740' => 'hma', 'HPP92_003520' => 'vpl', 'HPP92_006628' => 'vpl', 'HPP92_006645' => 'vpl', 'HPP92_014669' => 'vpl', 'HPP92_015077' => 'vpl', 'Hund16742' => 'sun', 'Hund17022' => 'sun', 'Lalb_Chr02g0152131' => 'lal', 'Lalb_Chr05g0225371' => 'lal', 'Lalb_Chr07g0189841' => 'lal', 'Lalb_Chr07g0192961' => 'lal', 'Lalb_Chr12g0208221' => 'lal', 'Lalb_Chr13g0291211' => 'lal', 'Lalb_Chr13g0291781' => 'lal', 'Lalb_Chr18g0044651' => 'lal', 'Lalb_Chr21g0313731' => 'lal', 'Lj1g0022533' => 'lja', 'Lj2A18T50' => 'lonja', 'Lj2A92G93' => 'lonja', 'Lj3A965T73' => 'lonja', 'Lj3g0000673' => 'lja', 'Lj3g0002666' => 'lja', 'Lj4g0016985' => 'lja', 'Lj5g0003625' => 'lja', 'Lj7A529G36' => 'lonja', 'Lj9A569T49' => 'lonja', 'Lj9A604T63' => 'lonja', 'Lsat_1_v5_gn_3_132060' => 'lsa', 'Lsat_1_v5_gn_4_68941' => 'lsa', 'Lsat_1_v5_gn_5_95580' => 'lsa', 'Lsat_1_v5_gn_7_161' => 'lsa', 'Lsat_1_v5_gn_7_7041' => 'lsa', 'Lsat_1_v5_gn_9_33481' => 'lsa', 'Lsat_1_v5_gn_9_68260' => 'lsa', 'Manes.01G073100' => 'mes', 'Manes.01G266300' => 'mes', 'Manes.02G033300' => 'mes', 'Manes.05G017900' => 'mes', 'Manes.05G046100' => 'mes', 'Manes.08G080900' => 'mes', 'Manes.10G049400' => 'mes', 'Mapoly0009s0186' => 'mpo', 'Mapoly0036s0118' => 'mpo', 'Mapoly0101s0046' => 'mpo', 'MBI04_g30218_MAGBIO' => 'mbi', 'MBI04_g35564_MAGBIO' => 'mbi', 'MBI12_g34011_MAGBIO' => 'mbi', 'MBI14_g04655_MAGBIO' => 'mbi', 'MCO07G653' => 'mco', 'MCO10G173' => 'mco', 'MD01G1087100' => 'mdo', 'MD01G1104200' => 'mdo', 'MD02G1205100' => 'mdo', 'MD04G1079200' => 'mdo', 'MD04G1131400' => 'mdo', 'MD07G1121600' => 'mdo', 'MD07G1157300' => 'mdo', 'MD07G1171000' => 'mdo', 'MD12G1144500' => 'mdo', 'Medtr1g094610' => 'mtr', 'Medtr4g021795' => 'mtr', 'Medtr4g023760' => 'mtr', 'Medtr7g118050' => 'mtr', 'MELO3C005582.2' => 'cme', 'MELO3C005989.2' => 'cme', 'MELO3C006192.2' => 'cme', 'MELO3C009248.2' => 'cme', 'MELO3C019817.2' => 'cme', 'Migut.B01625' => 'egut', 'Migut.B01915' => 'egut', 'Migut.F01721' => 'egut', 'Migut.J00314' => 'egut', 'MSTRG.20742' => 'ama', 'MSTRG.8134' => 'ama', 'Nitab4.5_0000096g0010' => 'nta', 'Nitab4.5_0000202g0030' => 'nta', 'Nitab4.5_0000216g0370' => 'nta', 'Nitab4.5_0000457g0230' => 'nta', 'Nitab4.5_0001702g0170' => 'nta', 'Nitab4.5_0003607g0010' => 'nta', 'Nitab4.5_0004917g0020' => 'nta', 'Nitab4.5_0007059g0010' => 'nta', 'Nitab4.5_0007184g0010' => 'nta', 'Nitab4.5_0007346g0020' => 'nta', 'Nn1g00410' => 'nnu', 'Nn1g01252' => 'nnu', 'Nn2g11168' => 'nnu', 'Nn2g13403' => 'nnu', 'Nn2g13760' => 'nnu', 'Nn4g26380' => 'nnu', 'Oeu000806.2' => 'oeu', 'Oeu005788.1' => 'oeu', 'Oeu006900.3' => 'oeu', 'Oeu007797.1' => 'oeu', 'Oeu011932.1' => 'oeu', 'Oeu022739.1' => 'oeu', 'Oeu037918.1' => 'oeu', 'Oeu055490.2' => 'oeu', 'Os01g0844400' => 'osa', 'Os02g0819100' => 'osa', 'Os03g0804300' => 'osa', 'Os05g0458000' => 'osa', 'Os07g0467800' => 'osa', 'Os12g0602200' => 'osa', 'Peaxi162Scf00013g03444' => 'pax', 'Peaxi162Scf00094g01120' => 'pax', 'Peaxi162Scf00191g01211' => 'pax', 'Peaxi162Scf00238g01110' => 'pax', 'Peaxi162Scf00330g00719' => 'pax', 'Peaxi162Scf00627g00018' => 'pax', 'PGR031G2686' => 'pgr', 'PGR042G0809' => 'pgr', 'PGR142G0193' => 'pgr', 'PGSC0003DMG400011066' => 'stu', 'PGSC0003DMG400012041' => 'stu', 'PGSC0003DMG400013678' => 'stu', 'PGSC0003DMG400023477' => 'stu', 'PGSC0003DMG400025956' => 'stu', 'PGSC0003DMG401019151' => 'stu', 'Phvul.006G116400' => 'pvu', 'Phvul.007G097300' => 'pvu', 'Phvul.010G015000' => 'pvu', 'Phvul.010G083900' => 'pvu', 'Potri.001G117100' => 'ptr', 'Potri.002G147300' => 'ptr', 'Potri.003G115600' => 'ptr', 'Potri.006G087400' => 'ptr', 'Potri.010G226100' => 'ptr', 'Potri.014G069200' => 'ptr', 'Potri.014G104000' => 'ptr', 'Potri.016G100200' => 'ptr', 'Pp3c10_20450' => 'ppa', 'Pp3c1_42400' => 'ppa', 'Pp3c3_24390' => 'ppa', 'Pp3c3_2860' => 'ppa', 'PRCOL_00003193' => 'pco', 'Prupe.2G144500' => 'ppe', 'Prupe.2G195700' => 'ppe', 'Prupe.2G209800' => 'ppe', 'Prupe.5G080000' => 'ppe', 'Prupe.6G257900' => 'ppe', 'Psat3g001160' => 'psa', 'Psat6g181880' => 'psa', 'Psat7g233720' => 'psa', 'PSO063G7587' => 'pso', 'PSO339G2145' => 'pso', 'PSO339G3369' => 'pso', 'PSO478G2747' => 'pso', 'PSO513G0140' => 'pso', 'PSO782G1614' => 'pso', 'PSO782G4889' => 'pso', 'PSO782G5485' => 'pso', 'PSO801G0241' => 'pso', 'QL07p048854' => 'qlo', 'QL08p046745' => 'qlo', 'QL08p052606' => 'qlo', 'QL08p053414' => 'qlo', 'QL08p054868' => 'qlo', 'RcHm_v2.0_Chr1g0350251' => 'rch', 'RcHm_v2.0_Chr1g0360851' => 'rch', 'RcHm_v2.0_Chr1g0362791' => 'rch', 'RcHm_v2.0_Chr3g0466281' => 'rch', 'RcHm_v2.0_Chr7g0201481' => 'rch', 'Rhsim01G0148600' => 'rsi', 'Rhsim05G0194400' => 'rsi', 'Rhsim07G0000700' => 'rsi', 'Rhsim07G0000800' => 'rsi', 'Rhsim07G0027900' => 'rsi', 'Rhsim09G0149500' => 'rsi', 'RhsimUnG0186900' => 'rsi', 'Sabra01G0089900' => 'sbr', 'Sabra02G0114700' => 'sbr', 'Sabra02G0116300' => 'sbr', 'Sabra03G0080100' => 'sbr', 'Sabra08G0024300' => 'sbr', 'Sabra10G0174300' => 'sbr', 'Sabra14G0048900' => 'sbr', 'Sabra14G0076500' => 'sbr', 'SalBow5G2513' => 'sbo', 'Sc01g0002300' => 'sci', 'Sc01g0004450' => 'sci', 'Sc06g0001680' => 'sci', 'Sc23g0003580' => 'sci', 'Sed0000913' => 'sed', 'Sed0001655' => 'sed', 'Sed0007745' => 'sed', 'Sed0010951' => 'sed', 'Sed0017599' => 'sed', 'Sed0021405' => 'sed', 'Sed0022810' => 'sed', 'SEGI_07099' => 'sgi', 'SEGI_11931' => 'sgi', 'SEGI_13187' => 'sgi', 'SEGI_29958' => 'sgi', 'SEGI_36351' => 'sgi', 'SGA_v2.0_scaffold126G33770' => 'sas', 'SGA_v2.0_scaffold153G37003' => 'sas', 'SGA_v2.0_scaffold2G01359' => 'sas', 'SGA_v2.0_scaffold5G03064' => 'sas', 'SGA_v2.0_scaffold95G28903' => 'sas', 'SHI12701' => 'shi', 'SHI26410' => 'shi', 'SHI38997' => 'shi', 'SHI53759' => 'shi', 'SHI53886' => 'shi', 'SHI54714' => 'shi', 'SMO011G0041' => 'smo', 'SMO146G0251' => 'smo', 'SMO160G0004' => 'smo', 'SMO174G0057' => 'smo', 'SMO244G0089' => 'smo', 'SMO296G0011' => 'smo', 'Solyc01g091280.3' => 'sly', 'Solyc05g047610.3' => 'sly', 'Solyc05g047640.3' => 'sly', 'Solyc05g055630.3' => 'sly', 'Solyc10g018160.2' => 'sly', 'Solyc10g084820.2' => 'sly', 'Solyc10g086565.2' => 'sly', 'Sopen01g037030' => 'spe', 'Sopen05g027920' => 'spe', 'Sopen05g034070' => 'spe', 'Sopen10g007260' => 'spe', 'Sopen10g034260' => 'spe', 'Sopen10g035950' => 'spe', 'Sp3g07710' => 'spa', 'Sp4g27420' => 'spa', 'Sp5g02450' => 'spa', 'Sp6g01280' => 'spa', 'Sp6g38480' => 'spa', 'Sp7g20780' => 'spa', 'TAR374G1413' => 'tar', 'TAR623G1777' => 'tar', 'TAR629G2370' => 'tar', 'TAR633G1759' => 'tar', 'TAR636G3387' => 'tar', 'THA.LOC104802447' => 'tha', 'THA.LOC104813916' => 'tha', 'THA.LOC104816423' => 'tha', 'THA.LOC104817246' => 'tha', 'THA.LOC104825895' => 'tha', 'Thecc.01G335200' => 'tca', 'Thecc.01G377400' => 'tca', 'Thecc.03G262200' => 'tca', 'Thecc.05G036800' => 'tca', 'Thecc.10G080500' => 'tca', 'Thecc.10G080800' => 'tca', 'Thhalv10001560m.g' => 'esa', 'Thhalv10006120m.g' => 'esa', 'Thhalv10014375m.g' => 'esa', 'Thhalv10021264m.g' => 'esa', 'Thhalv10028856m.g' => 'esa', 'TPR.G1914' => 'tpr', 'TPR.G4757' => 'tpr', 'TPR.G5595' => 'tpr', 'TWI14G0952' => 'twi', 'TWI14G1307' => 'twi', 'TWI38G2143' => 'twi', 'TWI59G0826' => 'twi', 'TWI77G0527' => 'twi', 'TWI81G0150' => 'twi', 'unitig_21.g21018' => 'ugi', 'unitig_26.g9725' => 'ugi', 'unitig_744.g24653' => 'ugi', 'unitig_749.g13778' => 'ugi', 'unitig_899.g15035' => 'ugi', 'vmacro04296' => 'vma', 'vmacro04852' => 'vma', 'vmacro13404' => 'vma', 'vmacro20169' => 'vma', 'vmacro21014' => 'vma', 'VMungo0331G0237' => 'vmu', 'VMungo0331G0706' => 'vmu', 'VMungo0331G1361' => 'vmu', 'VMungo0331G1489' => 'vmu', 'VMungo0540G1037' => 'vmu', 'VMungo0720G2487' => 'vmu', 'VMungo0720G2721' => 'vmu', 'Zm00001eb086860' => 'zma', 'Zm00001eb104760' => 'zma', 'Zm00001eb148220' => 'zma', 'Zm00001eb259030' => 'zma', 'Zm00001eb289590' => 'zma', 'Zm00001eb420150' => 'zma' ) $gf_id = 'HOM05D000968' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000968' ) $data_identifier = 'HOM05D000968' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 19, 'bol' => (int) 9, 'bra' => (int) 12, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 5, 'ccan' => (int) 7, 'cde' => (int) 5, 'cfa' => (int) 8, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 4, 'dca' => (int) 5, 'din' => (int) 5, 'dzi' => (int) 12, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 25, 'fve' => (int) 5, 'gma' => (int) 9, 'ghi' => (int) 18, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 7, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 5, 'sun' => (int) 2, 'lal' => (int) 9, 'lja' => (int) 5, 'lonja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 9, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 2, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 3, 'stu' => (int) 6, 'pvu' => (int) 4, 'ptr' => (int) 8, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 3, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 1, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 5, 'sas' => (int) 5, 'shi' => (int) 6, 'smo' => (int) 6, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 3, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420150' $species_info = array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ) $local_species = 'bna' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000968', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p31690' => 'bna', 'A03p36040' => 'bna', 'A03p53730' => 'bna', 'A04p01410' => 'bna', 'A05p05420' => 'bna', 'A05p39630' => 'bna', 'A05p39640' => 'bna', 'A09p00970' => 'bna', 'A09p53060' => 'bna', 'A10p31890' => 'bna', 'Aa31LG10G15040' => 'aar', 'Aa31LG1G21090' => 'aar', 'Aa31LG1G26900' => 'aar', 'Aa31LG3G1820' => 'aar', 'Aa31LG5G1100' => 'aar', 'Aa31LG6G4740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2265' => 'aag', 'Actinidia07998' => 'ach', 'Actinidia11266' => 'ach', 'Actinidia12682' => 'ach', 'Actinidia26479' => 'ach', 'Actinidia31406' => 'ach', 'Actinidia32437' => 'ach', 'Actinidia38862' => 'ach', 'Ah.05g174230' => 'amhyb', 'Ah.05g179070' => 'amhyb', 'Ah.05g179090' => 'amhyb', 'Ah.12g059950' => 'amhyb', 'AL3G20480' => 'aly', 'AL4G44520' => 'aly', 'AL5G43110' => 'aly', 'AL6G13890' => 'aly', 'AL6G52620' => 'aly', 'AL7G30830' => 'aly', 'Aqoxy1G00899' => 'aox', 'Aqoxy5G04333' => 'aox', 'Aqoxy7G00641' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3IZ0NN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4EF6AW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W9P8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79GA3M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C43NQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFCU6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G95YVJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCHK29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LU1UG8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX91RN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGB4B1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8DA0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9H7JI' => 'arhy', 'AT3G09320' => 'ath', 'AT3G60800' => 'ath', 'AT4G00840' => 'ath', 'AT4G22750' => 'ath', 'AT5G04270' => 'ath', 'ATR0090G003' => 'atr', 'ATR0559G349' => 'atr', 'ATR0680G261' => 'atr', 'ATR0810G048' => 'atr', 'Atru.chr12.831' => 'acertr', 'Atru.chr5.303' => 'acertr', 'Atru.chr5.748' => 'acertr', 'Atru.chr8.1999' => 'acertr', 'Atru.chr9.1436' => 'acertr', 'AUR62004211' => 'cqu', 'AUR62004548' => 'cqu', 'AUR62013637' => 'cqu', 'AUR62022662' => 'cqu', 'AUR62025777' => 'cqu', 'AUR62042386' => 'cqu', 'BcaB01g02310' => 'bca', 'BcaB01g06062' => 'bca', 'BcaB02g08975' => 'bca', 'BcaB02g08980' => 'bca', 'BcaC01g04228' => 'bca', 'BcaC01g06830' => 'bca', 'BcaC02g10186' => 'bca', 'BcaC02g12214' => 'bca', 'BcaC04g24101' => 'bca', 'BcaC05g29520' => 'bca', 'BcaC05g29661' => 'bca', 'BcaC06g32130' => 'bca', 'BcaC06g32131' => 'bca', 'BcaC07g40601' => 'bca', 'BcaC07g42641' => 'bca', 'BcaNung01038' => 'bca', 'BcaNung01676' => 'bca', 'BcaNung02480' => 'bca', 'BcaNung07376' => 'bca', 'BolC3t16146H' => 'bol', 'BolC3t16637H' => 'bol', 'BolC4t22257H' => 'bol', 'BolC4t24728H' => 'bol', 'BolC5t34517H' => 'bol', 'BolC7t45703H' => 'bol', 'BolC8t51166H' => 'bol', 'BolC9t53038H' => 'bol', 'BolC9t60000H' => 'bol', 'BraA01t01345Z' => 'bra', 'BraA01t01346Z' => 'bra', 'BraA01t01348Z' => 'bra', 'BraA03t12347Z' => 'bra', 'BraA03t12775Z' => 'bra', 'BraA03t14439Z' => 'bra', 'BraA04t15860Z' => 'bra', 'BraA05t19511Z' => 'bra', 'BraA05t22746Z' => 'bra', 'BraA09t35767Z' => 'bra', 'BraA09t40732Z' => 'bra', 'BraA10t45233Z' => 'bra', 'C03p38720' => 'bna', 'C03p43680' => 'bna', 'C04p06350' => 'bna', 'C04p31800' => 'bna', 'C05p58680' => 'bna', 'C07p52110' => 'bna', 'C08p35760' => 'bna', 'C09p01050' => 'bna', 'C09p72600' => 'bna', 'CAN.G106.2' => 'can', 'CAN.G1482.1' => 'can', 'CAN.G324.12' => 'can', 'CAN.G388.20' => 'can', 'CAN.G412.7' => 'can', 'CAN.G694.32' => 'can', 'CAN.G92.12' => 'can', 'CANSAT11G2353' => 'cansat', 'CANSAT21G1398' => 'cansat', 'CANSAT56G2456' => 'cansat', 'CANSAT56G3031' => 'cansat', 'CANSAT56G4539' => 'cansat', 'CARHR083680' => 'chi', 'CARHR171190' => 'chi', 'CARHR209010' => 'chi', 'CARHR229680' => 'chi', 'CARHR249490' => 'chi', 'Carub.0003s0844' => 'cru', 'Carub.0005s2755' => 'cru', 'Carub.0006s0322' => 'cru', 'Carub.0006s3586' => 'cru', 'Carub.0007s1855' => 'cru', 'Ca_07808_v3' => 'car', 'Ca_09535_v3' => 'car', 'Ca_10548_v3' => 'car', 'Ca_19913_v3' => 'car', 'Ca_19916_v3' => 'car', 'Ca_19975_v3' => 'car', 'CBR_g22876' => 'cbr', 'CBR_g22879' => 'cbr', 'CBR_g38491' => 'cbr', 'CBR_g54185' => 'cbr', 'CBR_g54190' => 'cbr', 'Cc02_g11020' => 'ccan', 'Cc02_g23920' => 'ccan', 'Cc02_g39860' => 'ccan', 'Cc02_g39870' => 'ccan', 'Cc03_g06760' => 'ccan', 'Cc06_g02450' => 'ccan', 'Cc09_g09450' => 'ccan', 'CDE02G1959' => 'cde', 'CDE04G0600' => 'cde', 'CDE07G1996' => 'cde', 'CDE07G2078' => 'cde', 'CDE11G0611' => 'cde', 'Cfa001683' => 'cfa', 'Cfa001734' => 'cfa', 'Cfa001737' => 'cfa', 'Cfa003751' => 'cfa', 'Cfa012019' => 'cfa', 'Cfa017353' => 'cfa', 'Cfa017732' => 'cfa', 'Cfa022464' => 'cfa', 'Ciclev10012400m.g' => 'ccl', 'Ciclev10021242m.g' => 'ccl', 'Ciclev10021302m.g' => 'ccl', 'Ciclev10021463m.g' => 'ccl', 'Ciclev10032359m.g' => 'ccl', 'CiPaw.01G081000' => 'cil', 'CiPaw.01G262500' => 'cil', 'CiPaw.01G269800' => 'cil', 'CiPaw.02G168400' => 'cil', 'CiPaw.05G119500' => 'cil', 'CiPaw.11G147300' => 'cil', 'ClCG01G003630' => 'cla', 'ClCG05G000510' => 'cla', 'ClCG05G002300' => 'cla', 'ClCG08G007650' => 'cla', 'ClCG10G021250' => 'cla', 'COL.COLO4_06218' => 'col', 'COL.COLO4_12538' => 'col', 'COL.COLO4_14775' => 'col', 'COL.COLO4_23875' => 'col', 'Cpa.g.sc141.16' => 'cpa', 'Cpa.g.sc169.16' => 'cpa', 'Cpa.g.sc244.4' => 'cpa', 'Cpa.g.sc244.5' => 'cpa', 'Cpa.g.sc29.87' => 'cpa', 'Cpa.g.sc53.115' => 'cpa', 'Cre03.g207502' => 'cre', 'Cre06.g277000' => 'cre', 'Cre09.g394050' => 'cre', 'CsaV3_3G007680' => 'csa', 'CsaV3_3G009710' => 'csa', 'CsaV3_3G034790' => 'csa', 'CsaV3_5G003750' => 'csa', 'CsaV3_6G036620' => 'csa', 'CSS0002288' => 'camsi', 'CSS0011250' => 'camsi', 'CSS0021619' => 'camsi', 'CSS0046701' => 'camsi', 'DCAR_006420' => 'dca', 'DCAR_006865' => 'dca', 'DCAR_008558' => 'dca', 'DCAR_028754' => 'dca', 'DCAR_028755' => 'dca', 'Dinv31218' => 'din', 'Dinv32371' => 'din', 'Dinv34250' => 'din', 'Dinv37156' => 'din', 'Dinv43704' => 'din', 'Duzib093G1811' => 'dzi', 'Duzib106G1622' => 'dzi', 'Duzib114G0504' => 'dzi', 'Duzib128G0338' => 'dzi', 'Duzib128G1577' => 'dzi', 'Duzib133G0104' => 'dzi', 'Duzib133G1080' => 'dzi', 'Duzib138G0324' => 'dzi', 'Duzib138G0394' => 'dzi', 'Duzib205G0122' => 'dzi', 'Duzib268G1020' => 'dzi', 'Duzib268G1359' => 'dzi', 'ECA232G3929' => 'eca', 'ECA236G2210' => 'eca', 'ECA236G2287' => 'eca', 'ECA240G4568' => 'eca', 'ECA247G0894' => 'eca', 'EL10Ac1g00200' => 'bvu', 'EL10Ac1g00886' => 'bvu', 'EL10As1g23091' => 'bvu', 'EL10As1g23092' => 'bvu', 'Eucgr.A01284' => 'egr', 'Eucgr.A01285' => 'egr', 'Eucgr.D02456' => 'egr', 'Eucgr.E00018' => 'egr', 'Eucgr.E01439' => 'egr', 'Eucgr.G02859' => 'egr', 'FAN01G0168' => 'fan', 'FAN01G0453' => 'fan', 'FAN01G2761' => 'fan', 'FAN02G1239' => 'fan', 'FAN03G0645' => 'fan', 'FAN03G2707' => 'fan', 'FAN03G2978' => 'fan', 'FAN04G0227' => 'fan', 'FAN06G0091' => 'fan', 'FAN06G1418' => 'fan', 'FAN06G1512' => 'fan', 'FAN06G1986' => 'fan', 'FAN06G2905' => 'fan', 'FAN06G4325' => 'fan', 'FAN08G0033' => 'fan', 'FAN09G0642' => 'fan', 'FAN10G1763' => 'fan', 'FAN10G2026' => 'fan', 'FAN10G2513' => 'fan', 'FAN10G3402' => 'fan', 'FAN10G3564' => 'fan', 'FAN10G3987' => 'fan', 'FAN13G1490' => 'fan', 'FAN14G5857' => 'fan', 'FAN18G1188' => 'fan', 'FvH4_5g00750' => 'fve', 'FvH4_6g13410' => 'fve', 'FvH4_7g11740' => 'fve', 'FvH4_7g17410' => 'fve', 'FvH4_7g18860' => 'fve', 'Glyma.01G099100' => 'gma', 'Glyma.01G142300' => 'gma', 'Glyma.03G025500' => 'gma', 'Glyma.03G069700' => 'gma', 'Glyma.03G260000' => 'gma', 'Glyma.09G269800' => 'gma', 'Glyma.10G208700' => 'gma', 'Glyma.18G220400' => 'gma', 'Glyma.20G182000' => 'gma', 'Gohir.A01G221726' => 'ghi', 'Gohir.A07G134600' => 'ghi', 'Gohir.A07G146000' => 'ghi', 'Gohir.A08G173900' => 'ghi', 'Gohir.A09G194900' => 'ghi', 'Gohir.A10G204100' => 'ghi', 'Gohir.A11G080600' => 'ghi', 'Gohir.A11G327500' => 'ghi', 'Gohir.A12G101800' => 'ghi', 'Gohir.D01G211200' => 'ghi', 'Gohir.D07G139200' => 'ghi', 'Gohir.D07G152100' => 'ghi', 'Gohir.D08G192600' => 'ghi', 'Gohir.D09G189200' => 'ghi', 'Gohir.D10G212000' => 'ghi', 'Gohir.D11G085200' => 'ghi', 'Gohir.D11G346400' => 'ghi', 'Gohir.D12G104800' => 'ghi', 'Gorai.001G151300' => 'gra', 'Gorai.001G174100' => 'gra', 'Gorai.002G257000' => 'gra', 'Gorai.004G202600' => 'gra', 'Gorai.007G090900' => 'gra', 'Gorai.007G376700' => 'gra', 'Gorai.008G114100' => 'gra', 'Gorai.011G237900' => 'gra', 'GSVIVG01005450001' => 'vvi', 'GSVIVG01016232001' => 'vvi', 'GSVIVG01026157001' => 'vvi', 'GSVIVG01027419001' => 'vvi', 'GSVIVG01027631001' => 'vvi', 'GSVIVG01034143001' => 'vvi', 'HanXRQChr03g0093921' => 'han', 'HanXRQChr04g0120001' => 'han', 'HanXRQChr04g0122561' => 'han', 'HanXRQChr09g0246851' => 'han', 'HanXRQChr10g0293311' => 'han', 'HanXRQChr13g0425231' => 'han', 'HanXRQChr16g0532571' => 'han', 'Haze_09050' => 'cav', 'Haze_15715' => 'cav', 'Haze_15716' => 'cav', 'Haze_16803' => 'cav', 'Haze_16850' => 'cav', 'Hma1.2p1_0301F.1_g118655' => 'hma', 'Hma1.2p1_0309F.1_g120590' => 'hma', 'Hma1.2p1_0936F.1_g238900' => 'hma', 'Hma1.2p1_3552F.1_g336740' => 'hma', 'HPP92_003520' => 'vpl', 'HPP92_006628' => 'vpl', 'HPP92_006645' => 'vpl', 'HPP92_014669' => 'vpl', 'HPP92_015077' => 'vpl', 'Hund16742' => 'sun', 'Hund17022' => 'sun', 'Lalb_Chr02g0152131' => 'lal', 'Lalb_Chr05g0225371' => 'lal', 'Lalb_Chr07g0189841' => 'lal', 'Lalb_Chr07g0192961' => 'lal', 'Lalb_Chr12g0208221' => 'lal', 'Lalb_Chr13g0291211' => 'lal', 'Lalb_Chr13g0291781' => 'lal', 'Lalb_Chr18g0044651' => 'lal', 'Lalb_Chr21g0313731' => 'lal', 'Lj1g0022533' => 'lja', 'Lj2A18T50' => 'lonja', 'Lj2A92G93' => 'lonja', 'Lj3A965T73' => 'lonja', 'Lj3g0000673' => 'lja', 'Lj3g0002666' => 'lja', 'Lj4g0016985' => 'lja', 'Lj5g0003625' => 'lja', 'Lj7A529G36' => 'lonja', 'Lj9A569T49' => 'lonja', 'Lj9A604T63' => 'lonja', 'Lsat_1_v5_gn_3_132060' => 'lsa', 'Lsat_1_v5_gn_4_68941' => 'lsa', 'Lsat_1_v5_gn_5_95580' => 'lsa', 'Lsat_1_v5_gn_7_161' => 'lsa', 'Lsat_1_v5_gn_7_7041' => 'lsa', 'Lsat_1_v5_gn_9_33481' => 'lsa', 'Lsat_1_v5_gn_9_68260' => 'lsa', 'Manes.01G073100' => 'mes', 'Manes.01G266300' => 'mes', 'Manes.02G033300' => 'mes', 'Manes.05G017900' => 'mes', 'Manes.05G046100' => 'mes', 'Manes.08G080900' => 'mes', 'Manes.10G049400' => 'mes', 'Mapoly0009s0186' => 'mpo', 'Mapoly0036s0118' => 'mpo', 'Mapoly0101s0046' => 'mpo', 'MBI04_g30218_MAGBIO' => 'mbi', 'MBI04_g35564_MAGBIO' => 'mbi', 'MBI12_g34011_MAGBIO' => 'mbi', 'MBI14_g04655_MAGBIO' => 'mbi', 'MCO07G653' => 'mco', 'MCO10G173' => 'mco', 'MD01G1087100' => 'mdo', 'MD01G1104200' => 'mdo', 'MD02G1205100' => 'mdo', 'MD04G1079200' => 'mdo', 'MD04G1131400' => 'mdo', 'MD07G1121600' => 'mdo', 'MD07G1157300' => 'mdo', 'MD07G1171000' => 'mdo', 'MD12G1144500' => 'mdo', 'Medtr1g094610' => 'mtr', 'Medtr4g021795' => 'mtr', 'Medtr4g023760' => 'mtr', 'Medtr7g118050' => 'mtr', 'MELO3C005582.2' => 'cme', 'MELO3C005989.2' => 'cme', 'MELO3C006192.2' => 'cme', 'MELO3C009248.2' => 'cme', 'MELO3C019817.2' => 'cme', 'Migut.B01625' => 'egut', 'Migut.B01915' => 'egut', 'Migut.F01721' => 'egut', 'Migut.J00314' => 'egut', 'MSTRG.20742' => 'ama', 'MSTRG.8134' => 'ama', 'Nitab4.5_0000096g0010' => 'nta', 'Nitab4.5_0000202g0030' => 'nta', 'Nitab4.5_0000216g0370' => 'nta', 'Nitab4.5_0000457g0230' => 'nta', 'Nitab4.5_0001702g0170' => 'nta', 'Nitab4.5_0003607g0010' => 'nta', 'Nitab4.5_0004917g0020' => 'nta', 'Nitab4.5_0007059g0010' => 'nta', 'Nitab4.5_0007184g0010' => 'nta', 'Nitab4.5_0007346g0020' => 'nta', 'Nn1g00410' => 'nnu', 'Nn1g01252' => 'nnu', 'Nn2g11168' => 'nnu', 'Nn2g13403' => 'nnu', 'Nn2g13760' => 'nnu', 'Nn4g26380' => 'nnu', 'Oeu000806.2' => 'oeu', 'Oeu005788.1' => 'oeu', 'Oeu006900.3' => 'oeu', 'Oeu007797.1' => 'oeu', 'Oeu011932.1' => 'oeu', 'Oeu022739.1' => 'oeu', 'Oeu037918.1' => 'oeu', 'Oeu055490.2' => 'oeu', 'Os01g0844400' => 'osa', 'Os02g0819100' => 'osa', 'Os03g0804300' => 'osa', 'Os05g0458000' => 'osa', 'Os07g0467800' => 'osa', 'Os12g0602200' => 'osa', 'Peaxi162Scf00013g03444' => 'pax', 'Peaxi162Scf00094g01120' => 'pax', 'Peaxi162Scf00191g01211' => 'pax', 'Peaxi162Scf00238g01110' => 'pax', 'Peaxi162Scf00330g00719' => 'pax', 'Peaxi162Scf00627g00018' => 'pax', 'PGR031G2686' => 'pgr', 'PGR042G0809' => 'pgr', 'PGR142G0193' => 'pgr', 'PGSC0003DMG400011066' => 'stu', 'PGSC0003DMG400012041' => 'stu', 'PGSC0003DMG400013678' => 'stu', 'PGSC0003DMG400023477' => 'stu', 'PGSC0003DMG400025956' => 'stu', 'PGSC0003DMG401019151' => 'stu', 'Phvul.006G116400' => 'pvu', 'Phvul.007G097300' => 'pvu', 'Phvul.010G015000' => 'pvu', 'Phvul.010G083900' => 'pvu', 'Potri.001G117100' => 'ptr', 'Potri.002G147300' => 'ptr', 'Potri.003G115600' => 'ptr', 'Potri.006G087400' => 'ptr', 'Potri.010G226100' => 'ptr', 'Potri.014G069200' => 'ptr', 'Potri.014G104000' => 'ptr', 'Potri.016G100200' => 'ptr', 'Pp3c10_20450' => 'ppa', 'Pp3c1_42400' => 'ppa', 'Pp3c3_24390' => 'ppa', 'Pp3c3_2860' => 'ppa', 'PRCOL_00003193' => 'pco', 'Prupe.2G144500' => 'ppe', 'Prupe.2G195700' => 'ppe', 'Prupe.2G209800' => 'ppe', 'Prupe.5G080000' => 'ppe', 'Prupe.6G257900' => 'ppe', 'Psat3g001160' => 'psa', 'Psat6g181880' => 'psa', 'Psat7g233720' => 'psa', 'PSO063G7587' => 'pso', 'PSO339G2145' => 'pso', 'PSO339G3369' => 'pso', 'PSO478G2747' => 'pso', 'PSO513G0140' => 'pso', 'PSO782G1614' => 'pso', 'PSO782G4889' => 'pso', 'PSO782G5485' => 'pso', 'PSO801G0241' => 'pso', 'QL07p048854' => 'qlo', 'QL08p046745' => 'qlo', 'QL08p052606' => 'qlo', 'QL08p053414' => 'qlo', 'QL08p054868' => 'qlo', 'RcHm_v2.0_Chr1g0350251' => 'rch', 'RcHm_v2.0_Chr1g0360851' => 'rch', 'RcHm_v2.0_Chr1g0362791' => 'rch', 'RcHm_v2.0_Chr3g0466281' => 'rch', 'RcHm_v2.0_Chr7g0201481' => 'rch', 'Rhsim01G0148600' => 'rsi', 'Rhsim05G0194400' => 'rsi', 'Rhsim07G0000700' => 'rsi', 'Rhsim07G0000800' => 'rsi', 'Rhsim07G0027900' => 'rsi', 'Rhsim09G0149500' => 'rsi', 'RhsimUnG0186900' => 'rsi', 'Sabra01G0089900' => 'sbr', 'Sabra02G0114700' => 'sbr', 'Sabra02G0116300' => 'sbr', 'Sabra03G0080100' => 'sbr', 'Sabra08G0024300' => 'sbr', 'Sabra10G0174300' => 'sbr', 'Sabra14G0048900' => 'sbr', 'Sabra14G0076500' => 'sbr', 'SalBow5G2513' => 'sbo', 'Sc01g0002300' => 'sci', 'Sc01g0004450' => 'sci', 'Sc06g0001680' => 'sci', 'Sc23g0003580' => 'sci', 'Sed0000913' => 'sed', 'Sed0001655' => 'sed', 'Sed0007745' => 'sed', 'Sed0010951' => 'sed', 'Sed0017599' => 'sed', 'Sed0021405' => 'sed', 'Sed0022810' => 'sed', 'SEGI_07099' => 'sgi', 'SEGI_11931' => 'sgi', 'SEGI_13187' => 'sgi', 'SEGI_29958' => 'sgi', 'SEGI_36351' => 'sgi', 'SGA_v2.0_scaffold126G33770' => 'sas', 'SGA_v2.0_scaffold153G37003' => 'sas', 'SGA_v2.0_scaffold2G01359' => 'sas', 'SGA_v2.0_scaffold5G03064' => 'sas', 'SGA_v2.0_scaffold95G28903' => 'sas', 'SHI12701' => 'shi', 'SHI26410' => 'shi', 'SHI38997' => 'shi', 'SHI53759' => 'shi', 'SHI53886' => 'shi', 'SHI54714' => 'shi', 'SMO011G0041' => 'smo', 'SMO146G0251' => 'smo', 'SMO160G0004' => 'smo', 'SMO174G0057' => 'smo', 'SMO244G0089' => 'smo', 'SMO296G0011' => 'smo', 'Solyc01g091280.3' => 'sly', 'Solyc05g047610.3' => 'sly', 'Solyc05g047640.3' => 'sly', 'Solyc05g055630.3' => 'sly', 'Solyc10g018160.2' => 'sly', 'Solyc10g084820.2' => 'sly', 'Solyc10g086565.2' => 'sly', 'Sopen01g037030' => 'spe', 'Sopen05g027920' => 'spe', 'Sopen05g034070' => 'spe', 'Sopen10g007260' => 'spe', 'Sopen10g034260' => 'spe', 'Sopen10g035950' => 'spe', 'Sp3g07710' => 'spa', 'Sp4g27420' => 'spa', 'Sp5g02450' => 'spa', 'Sp6g01280' => 'spa', 'Sp6g38480' => 'spa', 'Sp7g20780' => 'spa', 'TAR374G1413' => 'tar', 'TAR623G1777' => 'tar', 'TAR629G2370' => 'tar', 'TAR633G1759' => 'tar', 'TAR636G3387' => 'tar', 'THA.LOC104802447' => 'tha', 'THA.LOC104813916' => 'tha', 'THA.LOC104816423' => 'tha', 'THA.LOC104817246' => 'tha', 'THA.LOC104825895' => 'tha', 'Thecc.01G335200' => 'tca', 'Thecc.01G377400' => 'tca', 'Thecc.03G262200' => 'tca', 'Thecc.05G036800' => 'tca', 'Thecc.10G080500' => 'tca', 'Thecc.10G080800' => 'tca', 'Thhalv10001560m.g' => 'esa', 'Thhalv10006120m.g' => 'esa', 'Thhalv10014375m.g' => 'esa', 'Thhalv10021264m.g' => 'esa', 'Thhalv10028856m.g' => 'esa', 'TPR.G1914' => 'tpr', 'TPR.G4757' => 'tpr', 'TPR.G5595' => 'tpr', 'TWI14G0952' => 'twi', 'TWI14G1307' => 'twi', 'TWI38G2143' => 'twi', 'TWI59G0826' => 'twi', 'TWI77G0527' => 'twi', 'TWI81G0150' => 'twi', 'unitig_21.g21018' => 'ugi', 'unitig_26.g9725' => 'ugi', 'unitig_744.g24653' => 'ugi', 'unitig_749.g13778' => 'ugi', 'unitig_899.g15035' => 'ugi', 'vmacro04296' => 'vma', 'vmacro04852' => 'vma', 'vmacro13404' => 'vma', 'vmacro20169' => 'vma', 'vmacro21014' => 'vma', 'VMungo0331G0237' => 'vmu', 'VMungo0331G0706' => 'vmu', 'VMungo0331G1361' => 'vmu', 'VMungo0331G1489' => 'vmu', 'VMungo0540G1037' => 'vmu', 'VMungo0720G2487' => 'vmu', 'VMungo0720G2721' => 'vmu', 'Zm00001eb086860' => 'zma', 'Zm00001eb104760' => 'zma', 'Zm00001eb148220' => 'zma', 'Zm00001eb259030' => 'zma', 'Zm00001eb289590' => 'zma', 'Zm00001eb420150' => 'zma' ), 'gf_id' => 'HOM05D000968', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000968' ), 'data_identifier' => 'HOM05D000968', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000968', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p31690' => 'bna', 'A03p36040' => 'bna', 'A03p53730' => 'bna', 'A04p01410' => 'bna', 'A05p05420' => 'bna', 'A05p39630' => 'bna', 'A05p39640' => 'bna', 'A09p00970' => 'bna', 'A09p53060' => 'bna', 'A10p31890' => 'bna', 'Aa31LG10G15040' => 'aar', 'Aa31LG1G21090' => 'aar', 'Aa31LG1G26900' => 'aar', 'Aa31LG3G1820' => 'aar', 'Aa31LG5G1100' => 'aar', 'Aa31LG6G4740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2265' => 'aag', 'Actinidia07998' => 'ach', 'Actinidia11266' => 'ach', 'Actinidia12682' => 'ach', 'Actinidia26479' => 'ach', 'Actinidia31406' => 'ach', 'Actinidia32437' => 'ach', 'Actinidia38862' => 'ach', 'Ah.05g174230' => 'amhyb', 'Ah.05g179070' => 'amhyb', 'Ah.05g179090' => 'amhyb', 'Ah.12g059950' => 'amhyb', 'AL3G20480' => 'aly', 'AL4G44520' => 'aly', 'AL5G43110' => 'aly', 'AL6G13890' => 'aly', 'AL6G52620' => 'aly', 'AL7G30830' => 'aly', 'Aqoxy1G00899' => 'aox', 'Aqoxy5G04333' => 'aox', 'Aqoxy7G00641' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3IZ0NN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4EF6AW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W9P8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79GA3M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C43NQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFCU6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G95YVJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCHK29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LU1UG8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX91RN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGB4B1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8DA0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9H7JI' => 'arhy', 'AT3G09320' => 'ath', 'AT3G60800' => 'ath', 'AT4G00840' => 'ath', 'AT4G22750' => 'ath', 'AT5G04270' => 'ath', 'ATR0090G003' => 'atr', 'ATR0559G349' => 'atr', 'ATR0680G261' => 'atr', 'ATR0810G048' => 'atr', 'Atru.chr12.831' => 'acertr', 'Atru.chr5.303' => 'acertr', 'Atru.chr5.748' => 'acertr', 'Atru.chr8.1999' => 'acertr', 'Atru.chr9.1436' => 'acertr', 'AUR62004211' => 'cqu', 'AUR62004548' => 'cqu', 'AUR62013637' => 'cqu', 'AUR62022662' => 'cqu', 'AUR62025777' => 'cqu', 'AUR62042386' => 'cqu', 'BcaB01g02310' => 'bca', 'BcaB01g06062' => 'bca', 'BcaB02g08975' => 'bca', 'BcaB02g08980' => 'bca', 'BcaC01g04228' => 'bca', 'BcaC01g06830' => 'bca', 'BcaC02g10186' => 'bca', 'BcaC02g12214' => 'bca', 'BcaC04g24101' => 'bca', 'BcaC05g29520' => 'bca', 'BcaC05g29661' => 'bca', 'BcaC06g32130' => 'bca', 'BcaC06g32131' => 'bca', 'BcaC07g40601' => 'bca', 'BcaC07g42641' => 'bca', 'BcaNung01038' => 'bca', 'BcaNung01676' => 'bca', 'BcaNung02480' => 'bca', 'BcaNung07376' => 'bca', 'BolC3t16146H' => 'bol', 'BolC3t16637H' => 'bol', 'BolC4t22257H' => 'bol', 'BolC4t24728H' => 'bol', 'BolC5t34517H' => 'bol', 'BolC7t45703H' => 'bol', 'BolC8t51166H' => 'bol', 'BolC9t53038H' => 'bol', 'BolC9t60000H' => 'bol', 'BraA01t01345Z' => 'bra', 'BraA01t01346Z' => 'bra', 'BraA01t01348Z' => 'bra', 'BraA03t12347Z' => 'bra', 'BraA03t12775Z' => 'bra', 'BraA03t14439Z' => 'bra', 'BraA04t15860Z' => 'bra', 'BraA05t19511Z' => 'bra', 'BraA05t22746Z' => 'bra', 'BraA09t35767Z' => 'bra', 'BraA09t40732Z' => 'bra', 'BraA10t45233Z' => 'bra', 'C03p38720' => 'bna', 'C03p43680' => 'bna', 'C04p06350' => 'bna', 'C04p31800' => 'bna', 'C05p58680' => 'bna', 'C07p52110' => 'bna', 'C08p35760' => 'bna', 'C09p01050' => 'bna', 'C09p72600' => 'bna', 'CAN.G106.2' => 'can', 'CAN.G1482.1' => 'can', 'CAN.G324.12' => 'can', 'CAN.G388.20' => 'can', 'CAN.G412.7' => 'can', 'CAN.G694.32' => 'can', 'CAN.G92.12' => 'can', 'CANSAT11G2353' => 'cansat', 'CANSAT21G1398' => 'cansat', 'CANSAT56G2456' => 'cansat', 'CANSAT56G3031' => 'cansat', 'CANSAT56G4539' => 'cansat', 'CARHR083680' => 'chi', 'CARHR171190' => 'chi', 'CARHR209010' => 'chi', 'CARHR229680' => 'chi', 'CARHR249490' => 'chi', 'Carub.0003s0844' => 'cru', 'Carub.0005s2755' => 'cru', 'Carub.0006s0322' => 'cru', 'Carub.0006s3586' => 'cru', 'Carub.0007s1855' => 'cru', 'Ca_07808_v3' => 'car', 'Ca_09535_v3' => 'car', 'Ca_10548_v3' => 'car', 'Ca_19913_v3' => 'car', 'Ca_19916_v3' => 'car', 'Ca_19975_v3' => 'car', 'CBR_g22876' => 'cbr', 'CBR_g22879' => 'cbr', 'CBR_g38491' => 'cbr', 'CBR_g54185' => 'cbr', 'CBR_g54190' => 'cbr', 'Cc02_g11020' => 'ccan', 'Cc02_g23920' => 'ccan', 'Cc02_g39860' => 'ccan', 'Cc02_g39870' => 'ccan', 'Cc03_g06760' => 'ccan', 'Cc06_g02450' => 'ccan', 'Cc09_g09450' => 'ccan', 'CDE02G1959' => 'cde', 'CDE04G0600' => 'cde', 'CDE07G1996' => 'cde', 'CDE07G2078' => 'cde', 'CDE11G0611' => 'cde', 'Cfa001683' => 'cfa', 'Cfa001734' => 'cfa', 'Cfa001737' => 'cfa', 'Cfa003751' => 'cfa', 'Cfa012019' => 'cfa', 'Cfa017353' => 'cfa', 'Cfa017732' => 'cfa', 'Cfa022464' => 'cfa', 'Ciclev10012400m.g' => 'ccl', 'Ciclev10021242m.g' => 'ccl', 'Ciclev10021302m.g' => 'ccl', 'Ciclev10021463m.g' => 'ccl', 'Ciclev10032359m.g' => 'ccl', 'CiPaw.01G081000' => 'cil', 'CiPaw.01G262500' => 'cil', 'CiPaw.01G269800' => 'cil', 'CiPaw.02G168400' => 'cil', 'CiPaw.05G119500' => 'cil', 'CiPaw.11G147300' => 'cil', 'ClCG01G003630' => 'cla', 'ClCG05G000510' => 'cla', 'ClCG05G002300' => 'cla', 'ClCG08G007650' => 'cla', 'ClCG10G021250' => 'cla', 'COL.COLO4_06218' => 'col', 'COL.COLO4_12538' => 'col', 'COL.COLO4_14775' => 'col', 'COL.COLO4_23875' => 'col', 'Cpa.g.sc141.16' => 'cpa', 'Cpa.g.sc169.16' => 'cpa', 'Cpa.g.sc244.4' => 'cpa', 'Cpa.g.sc244.5' => 'cpa', 'Cpa.g.sc29.87' => 'cpa', 'Cpa.g.sc53.115' => 'cpa', 'Cre03.g207502' => 'cre', 'Cre06.g277000' => 'cre', 'Cre09.g394050' => 'cre', 'CsaV3_3G007680' => 'csa', 'CsaV3_3G009710' => 'csa', 'CsaV3_3G034790' => 'csa', 'CsaV3_5G003750' => 'csa', 'CsaV3_6G036620' => 'csa', 'CSS0002288' => 'camsi', 'CSS0011250' => 'camsi', 'CSS0021619' => 'camsi', 'CSS0046701' => 'camsi', 'DCAR_006420' => 'dca', 'DCAR_006865' => 'dca', 'DCAR_008558' => 'dca', 'DCAR_028754' => 'dca', 'DCAR_028755' => 'dca', 'Dinv31218' => 'din', 'Dinv32371' => 'din', 'Dinv34250' => 'din', 'Dinv37156' => 'din', 'Dinv43704' => 'din', 'Duzib093G1811' => 'dzi', 'Duzib106G1622' => 'dzi', 'Duzib114G0504' => 'dzi', 'Duzib128G0338' => 'dzi', 'Duzib128G1577' => 'dzi', 'Duzib133G0104' => 'dzi', 'Duzib133G1080' => 'dzi', 'Duzib138G0324' => 'dzi', 'Duzib138G0394' => 'dzi', 'Duzib205G0122' => 'dzi', 'Duzib268G1020' => 'dzi', 'Duzib268G1359' => 'dzi', 'ECA232G3929' => 'eca', 'ECA236G2210' => 'eca', 'ECA236G2287' => 'eca', 'ECA240G4568' => 'eca', 'ECA247G0894' => 'eca', 'EL10Ac1g00200' => 'bvu', 'EL10Ac1g00886' => 'bvu', 'EL10As1g23091' => 'bvu', 'EL10As1g23092' => 'bvu', 'Eucgr.A01284' => 'egr', 'Eucgr.A01285' => 'egr', 'Eucgr.D02456' => 'egr', 'Eucgr.E00018' => 'egr', 'Eucgr.E01439' => 'egr', 'Eucgr.G02859' => 'egr', 'FAN01G0168' => 'fan', 'FAN01G0453' => 'fan', 'FAN01G2761' => 'fan', 'FAN02G1239' => 'fan', 'FAN03G0645' => 'fan', 'FAN03G2707' => 'fan', 'FAN03G2978' => 'fan', 'FAN04G0227' => 'fan', 'FAN06G0091' => 'fan', 'FAN06G1418' => 'fan', 'FAN06G1512' => 'fan', 'FAN06G1986' => 'fan', 'FAN06G2905' => 'fan', 'FAN06G4325' => 'fan', 'FAN08G0033' => 'fan', 'FAN09G0642' => 'fan', 'FAN10G1763' => 'fan', 'FAN10G2026' => 'fan', 'FAN10G2513' => 'fan', 'FAN10G3402' => 'fan', 'FAN10G3564' => 'fan', 'FAN10G3987' => 'fan', 'FAN13G1490' => 'fan', 'FAN14G5857' => 'fan', 'FAN18G1188' => 'fan', 'FvH4_5g00750' => 'fve', 'FvH4_6g13410' => 'fve', 'FvH4_7g11740' => 'fve', 'FvH4_7g17410' => 'fve', 'FvH4_7g18860' => 'fve', 'Glyma.01G099100' => 'gma', 'Glyma.01G142300' => 'gma', 'Glyma.03G025500' => 'gma', 'Glyma.03G069700' => 'gma', 'Glyma.03G260000' => 'gma', 'Glyma.09G269800' => 'gma', 'Glyma.10G208700' => 'gma', 'Glyma.18G220400' => 'gma', 'Glyma.20G182000' => 'gma', 'Gohir.A01G221726' => 'ghi', 'Gohir.A07G134600' => 'ghi', 'Gohir.A07G146000' => 'ghi', 'Gohir.A08G173900' => 'ghi', 'Gohir.A09G194900' => 'ghi', 'Gohir.A10G204100' => 'ghi', 'Gohir.A11G080600' => 'ghi', 'Gohir.A11G327500' => 'ghi', 'Gohir.A12G101800' => 'ghi', 'Gohir.D01G211200' => 'ghi', 'Gohir.D07G139200' => 'ghi', 'Gohir.D07G152100' => 'ghi', 'Gohir.D08G192600' => 'ghi', 'Gohir.D09G189200' => 'ghi', 'Gohir.D10G212000' => 'ghi', 'Gohir.D11G085200' => 'ghi', 'Gohir.D11G346400' => 'ghi', 'Gohir.D12G104800' => 'ghi', 'Gorai.001G151300' => 'gra', 'Gorai.001G174100' => 'gra', 'Gorai.002G257000' => 'gra', 'Gorai.004G202600' => 'gra', 'Gorai.007G090900' => 'gra', 'Gorai.007G376700' => 'gra', 'Gorai.008G114100' => 'gra', 'Gorai.011G237900' => 'gra', 'GSVIVG01005450001' => 'vvi', 'GSVIVG01016232001' => 'vvi', 'GSVIVG01026157001' => 'vvi', 'GSVIVG01027419001' => 'vvi', 'GSVIVG01027631001' => 'vvi', 'GSVIVG01034143001' => 'vvi', 'HanXRQChr03g0093921' => 'han', 'HanXRQChr04g0120001' => 'han', 'HanXRQChr04g0122561' => 'han', 'HanXRQChr09g0246851' => 'han', 'HanXRQChr10g0293311' => 'han', 'HanXRQChr13g0425231' => 'han', 'HanXRQChr16g0532571' => 'han', 'Haze_09050' => 'cav', 'Haze_15715' => 'cav', 'Haze_15716' => 'cav', 'Haze_16803' => 'cav', 'Haze_16850' => 'cav', 'Hma1.2p1_0301F.1_g118655' => 'hma', 'Hma1.2p1_0309F.1_g120590' => 'hma', 'Hma1.2p1_0936F.1_g238900' => 'hma', 'Hma1.2p1_3552F.1_g336740' => 'hma', 'HPP92_003520' => 'vpl', 'HPP92_006628' => 'vpl', 'HPP92_006645' => 'vpl', 'HPP92_014669' => 'vpl', 'HPP92_015077' => 'vpl', 'Hund16742' => 'sun', 'Hund17022' => 'sun', 'Lalb_Chr02g0152131' => 'lal', 'Lalb_Chr05g0225371' => 'lal', 'Lalb_Chr07g0189841' => 'lal', 'Lalb_Chr07g0192961' => 'lal', 'Lalb_Chr12g0208221' => 'lal', 'Lalb_Chr13g0291211' => 'lal', 'Lalb_Chr13g0291781' => 'lal', 'Lalb_Chr18g0044651' => 'lal', 'Lalb_Chr21g0313731' => 'lal', 'Lj1g0022533' => 'lja', 'Lj2A18T50' => 'lonja', 'Lj2A92G93' => 'lonja', 'Lj3A965T73' => 'lonja', 'Lj3g0000673' => 'lja', 'Lj3g0002666' => 'lja', 'Lj4g0016985' => 'lja', 'Lj5g0003625' => 'lja', 'Lj7A529G36' => 'lonja', 'Lj9A569T49' => 'lonja', 'Lj9A604T63' => 'lonja', 'Lsat_1_v5_gn_3_132060' => 'lsa', 'Lsat_1_v5_gn_4_68941' => 'lsa', 'Lsat_1_v5_gn_5_95580' => 'lsa', 'Lsat_1_v5_gn_7_161' => 'lsa', 'Lsat_1_v5_gn_7_7041' => 'lsa', 'Lsat_1_v5_gn_9_33481' => 'lsa', 'Lsat_1_v5_gn_9_68260' => 'lsa', 'Manes.01G073100' => 'mes', 'Manes.01G266300' => 'mes', 'Manes.02G033300' => 'mes', 'Manes.05G017900' => 'mes', 'Manes.05G046100' => 'mes', 'Manes.08G080900' => 'mes', 'Manes.10G049400' => 'mes', 'Mapoly0009s0186' => 'mpo', 'Mapoly0036s0118' => 'mpo', 'Mapoly0101s0046' => 'mpo', 'MBI04_g30218_MAGBIO' => 'mbi', 'MBI04_g35564_MAGBIO' => 'mbi', 'MBI12_g34011_MAGBIO' => 'mbi', 'MBI14_g04655_MAGBIO' => 'mbi', 'MCO07G653' => 'mco', 'MCO10G173' => 'mco', 'MD01G1087100' => 'mdo', 'MD01G1104200' => 'mdo', 'MD02G1205100' => 'mdo', 'MD04G1079200' => 'mdo', 'MD04G1131400' => 'mdo', 'MD07G1121600' => 'mdo', 'MD07G1157300' => 'mdo', 'MD07G1171000' => 'mdo', 'MD12G1144500' => 'mdo', 'Medtr1g094610' => 'mtr', 'Medtr4g021795' => 'mtr', 'Medtr4g023760' => 'mtr', 'Medtr7g118050' => 'mtr', 'MELO3C005582.2' => 'cme', 'MELO3C005989.2' => 'cme', 'MELO3C006192.2' => 'cme', 'MELO3C009248.2' => 'cme', 'MELO3C019817.2' => 'cme', 'Migut.B01625' => 'egut', 'Migut.B01915' => 'egut', 'Migut.F01721' => 'egut', 'Migut.J00314' => 'egut', 'MSTRG.20742' => 'ama', 'MSTRG.8134' => 'ama', 'Nitab4.5_0000096g0010' => 'nta', 'Nitab4.5_0000202g0030' => 'nta', 'Nitab4.5_0000216g0370' => 'nta', 'Nitab4.5_0000457g0230' => 'nta', 'Nitab4.5_0001702g0170' => 'nta', 'Nitab4.5_0003607g0010' => 'nta', 'Nitab4.5_0004917g0020' => 'nta', 'Nitab4.5_0007059g0010' => 'nta', 'Nitab4.5_0007184g0010' => 'nta', 'Nitab4.5_0007346g0020' => 'nta', 'Nn1g00410' => 'nnu', 'Nn1g01252' => 'nnu', 'Nn2g11168' => 'nnu', 'Nn2g13403' => 'nnu', 'Nn2g13760' => 'nnu', 'Nn4g26380' => 'nnu', 'Oeu000806.2' => 'oeu', 'Oeu005788.1' => 'oeu', 'Oeu006900.3' => 'oeu', 'Oeu007797.1' => 'oeu', 'Oeu011932.1' => 'oeu', 'Oeu022739.1' => 'oeu', 'Oeu037918.1' => 'oeu', 'Oeu055490.2' => 'oeu', 'Os01g0844400' => 'osa', 'Os02g0819100' => 'osa', 'Os03g0804300' => 'osa', 'Os05g0458000' => 'osa', 'Os07g0467800' => 'osa', 'Os12g0602200' => 'osa', 'Peaxi162Scf00013g03444' => 'pax', 'Peaxi162Scf00094g01120' => 'pax', 'Peaxi162Scf00191g01211' => 'pax', 'Peaxi162Scf00238g01110' => 'pax', 'Peaxi162Scf00330g00719' => 'pax', 'Peaxi162Scf00627g00018' => 'pax', 'PGR031G2686' => 'pgr', 'PGR042G0809' => 'pgr', 'PGR142G0193' => 'pgr', 'PGSC0003DMG400011066' => 'stu', 'PGSC0003DMG400012041' => 'stu', 'PGSC0003DMG400013678' => 'stu', 'PGSC0003DMG400023477' => 'stu', 'PGSC0003DMG400025956' => 'stu', 'PGSC0003DMG401019151' => 'stu', 'Phvul.006G116400' => 'pvu', 'Phvul.007G097300' => 'pvu', 'Phvul.010G015000' => 'pvu', 'Phvul.010G083900' => 'pvu', 'Potri.001G117100' => 'ptr', 'Potri.002G147300' => 'ptr', 'Potri.003G115600' => 'ptr', 'Potri.006G087400' => 'ptr', 'Potri.010G226100' => 'ptr', 'Potri.014G069200' => 'ptr', 'Potri.014G104000' => 'ptr', 'Potri.016G100200' => 'ptr', 'Pp3c10_20450' => 'ppa', 'Pp3c1_42400' => 'ppa', 'Pp3c3_24390' => 'ppa', 'Pp3c3_2860' => 'ppa', 'PRCOL_00003193' => 'pco', 'Prupe.2G144500' => 'ppe', 'Prupe.2G195700' => 'ppe', 'Prupe.2G209800' => 'ppe', 'Prupe.5G080000' => 'ppe', 'Prupe.6G257900' => 'ppe', 'Psat3g001160' => 'psa', 'Psat6g181880' => 'psa', 'Psat7g233720' => 'psa', 'PSO063G7587' => 'pso', 'PSO339G2145' => 'pso', 'PSO339G3369' => 'pso', 'PSO478G2747' => 'pso', 'PSO513G0140' => 'pso', 'PSO782G1614' => 'pso', 'PSO782G4889' => 'pso', 'PSO782G5485' => 'pso', 'PSO801G0241' => 'pso', 'QL07p048854' => 'qlo', 'QL08p046745' => 'qlo', 'QL08p052606' => 'qlo', 'QL08p053414' => 'qlo', 'QL08p054868' => 'qlo', 'RcHm_v2.0_Chr1g0350251' => 'rch', 'RcHm_v2.0_Chr1g0360851' => 'rch', 'RcHm_v2.0_Chr1g0362791' => 'rch', 'RcHm_v2.0_Chr3g0466281' => 'rch', 'RcHm_v2.0_Chr7g0201481' => 'rch', 'Rhsim01G0148600' => 'rsi', 'Rhsim05G0194400' => 'rsi', 'Rhsim07G0000700' => 'rsi', 'Rhsim07G0000800' => 'rsi', 'Rhsim07G0027900' => 'rsi', 'Rhsim09G0149500' => 'rsi', 'RhsimUnG0186900' => 'rsi', 'Sabra01G0089900' => 'sbr', 'Sabra02G0114700' => 'sbr', 'Sabra02G0116300' => 'sbr', 'Sabra03G0080100' => 'sbr', 'Sabra08G0024300' => 'sbr', 'Sabra10G0174300' => 'sbr', 'Sabra14G0048900' => 'sbr', 'Sabra14G0076500' => 'sbr', 'SalBow5G2513' => 'sbo', 'Sc01g0002300' => 'sci', 'Sc01g0004450' => 'sci', 'Sc06g0001680' => 'sci', 'Sc23g0003580' => 'sci', 'Sed0000913' => 'sed', 'Sed0001655' => 'sed', 'Sed0007745' => 'sed', 'Sed0010951' => 'sed', 'Sed0017599' => 'sed', 'Sed0021405' => 'sed', 'Sed0022810' => 'sed', 'SEGI_07099' => 'sgi', 'SEGI_11931' => 'sgi', 'SEGI_13187' => 'sgi', 'SEGI_29958' => 'sgi', 'SEGI_36351' => 'sgi', 'SGA_v2.0_scaffold126G33770' => 'sas', 'SGA_v2.0_scaffold153G37003' => 'sas', 'SGA_v2.0_scaffold2G01359' => 'sas', 'SGA_v2.0_scaffold5G03064' => 'sas', 'SGA_v2.0_scaffold95G28903' => 'sas', 'SHI12701' => 'shi', 'SHI26410' => 'shi', 'SHI38997' => 'shi', 'SHI53759' => 'shi', 'SHI53886' => 'shi', 'SHI54714' => 'shi', 'SMO011G0041' => 'smo', 'SMO146G0251' => 'smo', 'SMO160G0004' => 'smo', 'SMO174G0057' => 'smo', 'SMO244G0089' => 'smo', 'SMO296G0011' => 'smo', 'Solyc01g091280.3' => 'sly', 'Solyc05g047610.3' => 'sly', 'Solyc05g047640.3' => 'sly', 'Solyc05g055630.3' => 'sly', 'Solyc10g018160.2' => 'sly', 'Solyc10g084820.2' => 'sly', 'Solyc10g086565.2' => 'sly', 'Sopen01g037030' => 'spe', 'Sopen05g027920' => 'spe', 'Sopen05g034070' => 'spe', 'Sopen10g007260' => 'spe', 'Sopen10g034260' => 'spe', 'Sopen10g035950' => 'spe', 'Sp3g07710' => 'spa', 'Sp4g27420' => 'spa', 'Sp5g02450' => 'spa', 'Sp6g01280' => 'spa', 'Sp6g38480' => 'spa', 'Sp7g20780' => 'spa', 'TAR374G1413' => 'tar', 'TAR623G1777' => 'tar', 'TAR629G2370' => 'tar', 'TAR633G1759' => 'tar', 'TAR636G3387' => 'tar', 'THA.LOC104802447' => 'tha', 'THA.LOC104813916' => 'tha', 'THA.LOC104816423' => 'tha', 'THA.LOC104817246' => 'tha', 'THA.LOC104825895' => 'tha', 'Thecc.01G335200' => 'tca', 'Thecc.01G377400' => 'tca', 'Thecc.03G262200' => 'tca', 'Thecc.05G036800' => 'tca', 'Thecc.10G080500' => 'tca', 'Thecc.10G080800' => 'tca', 'Thhalv10001560m.g' => 'esa', 'Thhalv10006120m.g' => 'esa', 'Thhalv10014375m.g' => 'esa', 'Thhalv10021264m.g' => 'esa', 'Thhalv10028856m.g' => 'esa', 'TPR.G1914' => 'tpr', 'TPR.G4757' => 'tpr', 'TPR.G5595' => 'tpr', 'TWI14G0952' => 'twi', 'TWI14G1307' => 'twi', 'TWI38G2143' => 'twi', 'TWI59G0826' => 'twi', 'TWI77G0527' => 'twi', 'TWI81G0150' => 'twi', 'unitig_21.g21018' => 'ugi', 'unitig_26.g9725' => 'ugi', 'unitig_744.g24653' => 'ugi', 'unitig_749.g13778' => 'ugi', 'unitig_899.g15035' => 'ugi', 'vmacro04296' => 'vma', 'vmacro04852' => 'vma', 'vmacro13404' => 'vma', 'vmacro20169' => 'vma', 'vmacro21014' => 'vma', 'VMungo0331G0237' => 'vmu', 'VMungo0331G0706' => 'vmu', 'VMungo0331G1361' => 'vmu', 'VMungo0331G1489' => 'vmu', 'VMungo0540G1037' => 'vmu', 'VMungo0720G2487' => 'vmu', 'VMungo0720G2721' => 'vmu', 'Zm00001eb086860' => 'zma', 'Zm00001eb104760' => 'zma', 'Zm00001eb148220' => 'zma', 'Zm00001eb259030' => 'zma', 'Zm00001eb289590' => 'zma', 'Zm00001eb420150' => 'zma' ) $gf_id = 'HOM05D000968' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000968' ) $data_identifier = 'HOM05D000968' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 19, 'bol' => (int) 9, 'bra' => (int) 12, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 5, 'ccan' => (int) 7, 'cde' => (int) 5, 'cfa' => (int) 8, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 4, 'dca' => (int) 5, 'din' => (int) 5, 'dzi' => (int) 12, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 25, 'fve' => (int) 5, 'gma' => (int) 9, 'ghi' => (int) 18, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 7, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 5, 'sun' => (int) 2, 'lal' => (int) 9, 'lja' => (int) 5, 'lonja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 9, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 2, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 3, 'stu' => (int) 6, 'pvu' => (int) 4, 'ptr' => (int) 8, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 3, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 1, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 5, 'sas' => (int) 5, 'shi' => (int) 6, 'smo' => (int) 6, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 3, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420150' $species_info = array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ) $local_species = 'bna' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000968', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p31690' => 'bna', 'A03p36040' => 'bna', 'A03p53730' => 'bna', 'A04p01410' => 'bna', 'A05p05420' => 'bna', 'A05p39630' => 'bna', 'A05p39640' => 'bna', 'A09p00970' => 'bna', 'A09p53060' => 'bna', 'A10p31890' => 'bna', 'Aa31LG10G15040' => 'aar', 'Aa31LG1G21090' => 'aar', 'Aa31LG1G26900' => 'aar', 'Aa31LG3G1820' => 'aar', 'Aa31LG5G1100' => 'aar', 'Aa31LG6G4740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2265' => 'aag', 'Actinidia07998' => 'ach', 'Actinidia11266' => 'ach', 'Actinidia12682' => 'ach', 'Actinidia26479' => 'ach', 'Actinidia31406' => 'ach', 'Actinidia32437' => 'ach', 'Actinidia38862' => 'ach', 'Ah.05g174230' => 'amhyb', 'Ah.05g179070' => 'amhyb', 'Ah.05g179090' => 'amhyb', 'Ah.12g059950' => 'amhyb', 'AL3G20480' => 'aly', 'AL4G44520' => 'aly', 'AL5G43110' => 'aly', 'AL6G13890' => 'aly', 'AL6G52620' => 'aly', 'AL7G30830' => 'aly', 'Aqoxy1G00899' => 'aox', 'Aqoxy5G04333' => 'aox', 'Aqoxy7G00641' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3IZ0NN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4EF6AW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W9P8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79GA3M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C43NQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFCU6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G95YVJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCHK29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LU1UG8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX91RN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGB4B1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8DA0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9H7JI' => 'arhy', 'AT3G09320' => 'ath', 'AT3G60800' => 'ath', 'AT4G00840' => 'ath', 'AT4G22750' => 'ath', 'AT5G04270' => 'ath', 'ATR0090G003' => 'atr', 'ATR0559G349' => 'atr', 'ATR0680G261' => 'atr', 'ATR0810G048' => 'atr', 'Atru.chr12.831' => 'acertr', 'Atru.chr5.303' => 'acertr', 'Atru.chr5.748' => 'acertr', 'Atru.chr8.1999' => 'acertr', 'Atru.chr9.1436' => 'acertr', 'AUR62004211' => 'cqu', 'AUR62004548' => 'cqu', 'AUR62013637' => 'cqu', 'AUR62022662' => 'cqu', 'AUR62025777' => 'cqu', 'AUR62042386' => 'cqu', 'BcaB01g02310' => 'bca', 'BcaB01g06062' => 'bca', 'BcaB02g08975' => 'bca', 'BcaB02g08980' => 'bca', 'BcaC01g04228' => 'bca', 'BcaC01g06830' => 'bca', 'BcaC02g10186' => 'bca', 'BcaC02g12214' => 'bca', 'BcaC04g24101' => 'bca', 'BcaC05g29520' => 'bca', 'BcaC05g29661' => 'bca', 'BcaC06g32130' => 'bca', 'BcaC06g32131' => 'bca', 'BcaC07g40601' => 'bca', 'BcaC07g42641' => 'bca', 'BcaNung01038' => 'bca', 'BcaNung01676' => 'bca', 'BcaNung02480' => 'bca', 'BcaNung07376' => 'bca', 'BolC3t16146H' => 'bol', 'BolC3t16637H' => 'bol', 'BolC4t22257H' => 'bol', 'BolC4t24728H' => 'bol', 'BolC5t34517H' => 'bol', 'BolC7t45703H' => 'bol', 'BolC8t51166H' => 'bol', 'BolC9t53038H' => 'bol', 'BolC9t60000H' => 'bol', 'BraA01t01345Z' => 'bra', 'BraA01t01346Z' => 'bra', 'BraA01t01348Z' => 'bra', 'BraA03t12347Z' => 'bra', 'BraA03t12775Z' => 'bra', 'BraA03t14439Z' => 'bra', 'BraA04t15860Z' => 'bra', 'BraA05t19511Z' => 'bra', 'BraA05t22746Z' => 'bra', 'BraA09t35767Z' => 'bra', 'BraA09t40732Z' => 'bra', 'BraA10t45233Z' => 'bra', 'C03p38720' => 'bna', 'C03p43680' => 'bna', 'C04p06350' => 'bna', 'C04p31800' => 'bna', 'C05p58680' => 'bna', 'C07p52110' => 'bna', 'C08p35760' => 'bna', 'C09p01050' => 'bna', 'C09p72600' => 'bna', 'CAN.G106.2' => 'can', 'CAN.G1482.1' => 'can', 'CAN.G324.12' => 'can', 'CAN.G388.20' => 'can', 'CAN.G412.7' => 'can', 'CAN.G694.32' => 'can', 'CAN.G92.12' => 'can', 'CANSAT11G2353' => 'cansat', 'CANSAT21G1398' => 'cansat', 'CANSAT56G2456' => 'cansat', 'CANSAT56G3031' => 'cansat', 'CANSAT56G4539' => 'cansat', 'CARHR083680' => 'chi', 'CARHR171190' => 'chi', 'CARHR209010' => 'chi', 'CARHR229680' => 'chi', 'CARHR249490' => 'chi', 'Carub.0003s0844' => 'cru', 'Carub.0005s2755' => 'cru', 'Carub.0006s0322' => 'cru', 'Carub.0006s3586' => 'cru', 'Carub.0007s1855' => 'cru', 'Ca_07808_v3' => 'car', 'Ca_09535_v3' => 'car', 'Ca_10548_v3' => 'car', 'Ca_19913_v3' => 'car', 'Ca_19916_v3' => 'car', 'Ca_19975_v3' => 'car', 'CBR_g22876' => 'cbr', 'CBR_g22879' => 'cbr', 'CBR_g38491' => 'cbr', 'CBR_g54185' => 'cbr', 'CBR_g54190' => 'cbr', 'Cc02_g11020' => 'ccan', 'Cc02_g23920' => 'ccan', 'Cc02_g39860' => 'ccan', 'Cc02_g39870' => 'ccan', 'Cc03_g06760' => 'ccan', 'Cc06_g02450' => 'ccan', 'Cc09_g09450' => 'ccan', 'CDE02G1959' => 'cde', 'CDE04G0600' => 'cde', 'CDE07G1996' => 'cde', 'CDE07G2078' => 'cde', 'CDE11G0611' => 'cde', 'Cfa001683' => 'cfa', 'Cfa001734' => 'cfa', 'Cfa001737' => 'cfa', 'Cfa003751' => 'cfa', 'Cfa012019' => 'cfa', 'Cfa017353' => 'cfa', 'Cfa017732' => 'cfa', 'Cfa022464' => 'cfa', 'Ciclev10012400m.g' => 'ccl', 'Ciclev10021242m.g' => 'ccl', 'Ciclev10021302m.g' => 'ccl', 'Ciclev10021463m.g' => 'ccl', 'Ciclev10032359m.g' => 'ccl', 'CiPaw.01G081000' => 'cil', 'CiPaw.01G262500' => 'cil', 'CiPaw.01G269800' => 'cil', 'CiPaw.02G168400' => 'cil', 'CiPaw.05G119500' => 'cil', 'CiPaw.11G147300' => 'cil', 'ClCG01G003630' => 'cla', 'ClCG05G000510' => 'cla', 'ClCG05G002300' => 'cla', 'ClCG08G007650' => 'cla', 'ClCG10G021250' => 'cla', 'COL.COLO4_06218' => 'col', 'COL.COLO4_12538' => 'col', 'COL.COLO4_14775' => 'col', 'COL.COLO4_23875' => 'col', 'Cpa.g.sc141.16' => 'cpa', 'Cpa.g.sc169.16' => 'cpa', 'Cpa.g.sc244.4' => 'cpa', 'Cpa.g.sc244.5' => 'cpa', 'Cpa.g.sc29.87' => 'cpa', 'Cpa.g.sc53.115' => 'cpa', 'Cre03.g207502' => 'cre', 'Cre06.g277000' => 'cre', 'Cre09.g394050' => 'cre', 'CsaV3_3G007680' => 'csa', 'CsaV3_3G009710' => 'csa', 'CsaV3_3G034790' => 'csa', 'CsaV3_5G003750' => 'csa', 'CsaV3_6G036620' => 'csa', 'CSS0002288' => 'camsi', 'CSS0011250' => 'camsi', 'CSS0021619' => 'camsi', 'CSS0046701' => 'camsi', 'DCAR_006420' => 'dca', 'DCAR_006865' => 'dca', 'DCAR_008558' => 'dca', 'DCAR_028754' => 'dca', 'DCAR_028755' => 'dca', 'Dinv31218' => 'din', 'Dinv32371' => 'din', 'Dinv34250' => 'din', 'Dinv37156' => 'din', 'Dinv43704' => 'din', 'Duzib093G1811' => 'dzi', 'Duzib106G1622' => 'dzi', 'Duzib114G0504' => 'dzi', 'Duzib128G0338' => 'dzi', 'Duzib128G1577' => 'dzi', 'Duzib133G0104' => 'dzi', 'Duzib133G1080' => 'dzi', 'Duzib138G0324' => 'dzi', 'Duzib138G0394' => 'dzi', 'Duzib205G0122' => 'dzi', 'Duzib268G1020' => 'dzi', 'Duzib268G1359' => 'dzi', 'ECA232G3929' => 'eca', 'ECA236G2210' => 'eca', 'ECA236G2287' => 'eca', 'ECA240G4568' => 'eca', 'ECA247G0894' => 'eca', 'EL10Ac1g00200' => 'bvu', 'EL10Ac1g00886' => 'bvu', 'EL10As1g23091' => 'bvu', 'EL10As1g23092' => 'bvu', 'Eucgr.A01284' => 'egr', 'Eucgr.A01285' => 'egr', 'Eucgr.D02456' => 'egr', 'Eucgr.E00018' => 'egr', 'Eucgr.E01439' => 'egr', 'Eucgr.G02859' => 'egr', 'FAN01G0168' => 'fan', 'FAN01G0453' => 'fan', 'FAN01G2761' => 'fan', 'FAN02G1239' => 'fan', 'FAN03G0645' => 'fan', 'FAN03G2707' => 'fan', 'FAN03G2978' => 'fan', 'FAN04G0227' => 'fan', 'FAN06G0091' => 'fan', 'FAN06G1418' => 'fan', 'FAN06G1512' => 'fan', 'FAN06G1986' => 'fan', 'FAN06G2905' => 'fan', 'FAN06G4325' => 'fan', 'FAN08G0033' => 'fan', 'FAN09G0642' => 'fan', 'FAN10G1763' => 'fan', 'FAN10G2026' => 'fan', 'FAN10G2513' => 'fan', 'FAN10G3402' => 'fan', 'FAN10G3564' => 'fan', 'FAN10G3987' => 'fan', 'FAN13G1490' => 'fan', 'FAN14G5857' => 'fan', 'FAN18G1188' => 'fan', 'FvH4_5g00750' => 'fve', 'FvH4_6g13410' => 'fve', 'FvH4_7g11740' => 'fve', 'FvH4_7g17410' => 'fve', 'FvH4_7g18860' => 'fve', 'Glyma.01G099100' => 'gma', 'Glyma.01G142300' => 'gma', 'Glyma.03G025500' => 'gma', 'Glyma.03G069700' => 'gma', 'Glyma.03G260000' => 'gma', 'Glyma.09G269800' => 'gma', 'Glyma.10G208700' => 'gma', 'Glyma.18G220400' => 'gma', 'Glyma.20G182000' => 'gma', 'Gohir.A01G221726' => 'ghi', 'Gohir.A07G134600' => 'ghi', 'Gohir.A07G146000' => 'ghi', 'Gohir.A08G173900' => 'ghi', 'Gohir.A09G194900' => 'ghi', 'Gohir.A10G204100' => 'ghi', 'Gohir.A11G080600' => 'ghi', 'Gohir.A11G327500' => 'ghi', 'Gohir.A12G101800' => 'ghi', 'Gohir.D01G211200' => 'ghi', 'Gohir.D07G139200' => 'ghi', 'Gohir.D07G152100' => 'ghi', 'Gohir.D08G192600' => 'ghi', 'Gohir.D09G189200' => 'ghi', 'Gohir.D10G212000' => 'ghi', 'Gohir.D11G085200' => 'ghi', 'Gohir.D11G346400' => 'ghi', 'Gohir.D12G104800' => 'ghi', 'Gorai.001G151300' => 'gra', 'Gorai.001G174100' => 'gra', 'Gorai.002G257000' => 'gra', 'Gorai.004G202600' => 'gra', 'Gorai.007G090900' => 'gra', 'Gorai.007G376700' => 'gra', 'Gorai.008G114100' => 'gra', 'Gorai.011G237900' => 'gra', 'GSVIVG01005450001' => 'vvi', 'GSVIVG01016232001' => 'vvi', 'GSVIVG01026157001' => 'vvi', 'GSVIVG01027419001' => 'vvi', 'GSVIVG01027631001' => 'vvi', 'GSVIVG01034143001' => 'vvi', 'HanXRQChr03g0093921' => 'han', 'HanXRQChr04g0120001' => 'han', 'HanXRQChr04g0122561' => 'han', 'HanXRQChr09g0246851' => 'han', 'HanXRQChr10g0293311' => 'han', 'HanXRQChr13g0425231' => 'han', 'HanXRQChr16g0532571' => 'han', 'Haze_09050' => 'cav', 'Haze_15715' => 'cav', 'Haze_15716' => 'cav', 'Haze_16803' => 'cav', 'Haze_16850' => 'cav', 'Hma1.2p1_0301F.1_g118655' => 'hma', 'Hma1.2p1_0309F.1_g120590' => 'hma', 'Hma1.2p1_0936F.1_g238900' => 'hma', 'Hma1.2p1_3552F.1_g336740' => 'hma', 'HPP92_003520' => 'vpl', 'HPP92_006628' => 'vpl', 'HPP92_006645' => 'vpl', 'HPP92_014669' => 'vpl', 'HPP92_015077' => 'vpl', 'Hund16742' => 'sun', 'Hund17022' => 'sun', 'Lalb_Chr02g0152131' => 'lal', 'Lalb_Chr05g0225371' => 'lal', 'Lalb_Chr07g0189841' => 'lal', 'Lalb_Chr07g0192961' => 'lal', 'Lalb_Chr12g0208221' => 'lal', 'Lalb_Chr13g0291211' => 'lal', 'Lalb_Chr13g0291781' => 'lal', 'Lalb_Chr18g0044651' => 'lal', 'Lalb_Chr21g0313731' => 'lal', 'Lj1g0022533' => 'lja', 'Lj2A18T50' => 'lonja', 'Lj2A92G93' => 'lonja', 'Lj3A965T73' => 'lonja', 'Lj3g0000673' => 'lja', 'Lj3g0002666' => 'lja', 'Lj4g0016985' => 'lja', 'Lj5g0003625' => 'lja', 'Lj7A529G36' => 'lonja', 'Lj9A569T49' => 'lonja', 'Lj9A604T63' => 'lonja', 'Lsat_1_v5_gn_3_132060' => 'lsa', 'Lsat_1_v5_gn_4_68941' => 'lsa', 'Lsat_1_v5_gn_5_95580' => 'lsa', 'Lsat_1_v5_gn_7_161' => 'lsa', 'Lsat_1_v5_gn_7_7041' => 'lsa', 'Lsat_1_v5_gn_9_33481' => 'lsa', 'Lsat_1_v5_gn_9_68260' => 'lsa', 'Manes.01G073100' => 'mes', 'Manes.01G266300' => 'mes', 'Manes.02G033300' => 'mes', 'Manes.05G017900' => 'mes', 'Manes.05G046100' => 'mes', 'Manes.08G080900' => 'mes', 'Manes.10G049400' => 'mes', 'Mapoly0009s0186' => 'mpo', 'Mapoly0036s0118' => 'mpo', 'Mapoly0101s0046' => 'mpo', 'MBI04_g30218_MAGBIO' => 'mbi', 'MBI04_g35564_MAGBIO' => 'mbi', 'MBI12_g34011_MAGBIO' => 'mbi', 'MBI14_g04655_MAGBIO' => 'mbi', 'MCO07G653' => 'mco', 'MCO10G173' => 'mco', 'MD01G1087100' => 'mdo', 'MD01G1104200' => 'mdo', 'MD02G1205100' => 'mdo', 'MD04G1079200' => 'mdo', 'MD04G1131400' => 'mdo', 'MD07G1121600' => 'mdo', 'MD07G1157300' => 'mdo', 'MD07G1171000' => 'mdo', 'MD12G1144500' => 'mdo', 'Medtr1g094610' => 'mtr', 'Medtr4g021795' => 'mtr', 'Medtr4g023760' => 'mtr', 'Medtr7g118050' => 'mtr', 'MELO3C005582.2' => 'cme', 'MELO3C005989.2' => 'cme', 'MELO3C006192.2' => 'cme', 'MELO3C009248.2' => 'cme', 'MELO3C019817.2' => 'cme', 'Migut.B01625' => 'egut', 'Migut.B01915' => 'egut', 'Migut.F01721' => 'egut', 'Migut.J00314' => 'egut', 'MSTRG.20742' => 'ama', 'MSTRG.8134' => 'ama', 'Nitab4.5_0000096g0010' => 'nta', 'Nitab4.5_0000202g0030' => 'nta', 'Nitab4.5_0000216g0370' => 'nta', 'Nitab4.5_0000457g0230' => 'nta', 'Nitab4.5_0001702g0170' => 'nta', 'Nitab4.5_0003607g0010' => 'nta', 'Nitab4.5_0004917g0020' => 'nta', 'Nitab4.5_0007059g0010' => 'nta', 'Nitab4.5_0007184g0010' => 'nta', 'Nitab4.5_0007346g0020' => 'nta', 'Nn1g00410' => 'nnu', 'Nn1g01252' => 'nnu', 'Nn2g11168' => 'nnu', 'Nn2g13403' => 'nnu', 'Nn2g13760' => 'nnu', 'Nn4g26380' => 'nnu', 'Oeu000806.2' => 'oeu', 'Oeu005788.1' => 'oeu', 'Oeu006900.3' => 'oeu', 'Oeu007797.1' => 'oeu', 'Oeu011932.1' => 'oeu', 'Oeu022739.1' => 'oeu', 'Oeu037918.1' => 'oeu', 'Oeu055490.2' => 'oeu', 'Os01g0844400' => 'osa', 'Os02g0819100' => 'osa', 'Os03g0804300' => 'osa', 'Os05g0458000' => 'osa', 'Os07g0467800' => 'osa', 'Os12g0602200' => 'osa', 'Peaxi162Scf00013g03444' => 'pax', 'Peaxi162Scf00094g01120' => 'pax', 'Peaxi162Scf00191g01211' => 'pax', 'Peaxi162Scf00238g01110' => 'pax', 'Peaxi162Scf00330g00719' => 'pax', 'Peaxi162Scf00627g00018' => 'pax', 'PGR031G2686' => 'pgr', 'PGR042G0809' => 'pgr', 'PGR142G0193' => 'pgr', 'PGSC0003DMG400011066' => 'stu', 'PGSC0003DMG400012041' => 'stu', 'PGSC0003DMG400013678' => 'stu', 'PGSC0003DMG400023477' => 'stu', 'PGSC0003DMG400025956' => 'stu', 'PGSC0003DMG401019151' => 'stu', 'Phvul.006G116400' => 'pvu', 'Phvul.007G097300' => 'pvu', 'Phvul.010G015000' => 'pvu', 'Phvul.010G083900' => 'pvu', 'Potri.001G117100' => 'ptr', 'Potri.002G147300' => 'ptr', 'Potri.003G115600' => 'ptr', 'Potri.006G087400' => 'ptr', 'Potri.010G226100' => 'ptr', 'Potri.014G069200' => 'ptr', 'Potri.014G104000' => 'ptr', 'Potri.016G100200' => 'ptr', 'Pp3c10_20450' => 'ppa', 'Pp3c1_42400' => 'ppa', 'Pp3c3_24390' => 'ppa', 'Pp3c3_2860' => 'ppa', 'PRCOL_00003193' => 'pco', 'Prupe.2G144500' => 'ppe', 'Prupe.2G195700' => 'ppe', 'Prupe.2G209800' => 'ppe', 'Prupe.5G080000' => 'ppe', 'Prupe.6G257900' => 'ppe', 'Psat3g001160' => 'psa', 'Psat6g181880' => 'psa', 'Psat7g233720' => 'psa', 'PSO063G7587' => 'pso', 'PSO339G2145' => 'pso', 'PSO339G3369' => 'pso', 'PSO478G2747' => 'pso', 'PSO513G0140' => 'pso', 'PSO782G1614' => 'pso', 'PSO782G4889' => 'pso', 'PSO782G5485' => 'pso', 'PSO801G0241' => 'pso', 'QL07p048854' => 'qlo', 'QL08p046745' => 'qlo', 'QL08p052606' => 'qlo', 'QL08p053414' => 'qlo', 'QL08p054868' => 'qlo', 'RcHm_v2.0_Chr1g0350251' => 'rch', 'RcHm_v2.0_Chr1g0360851' => 'rch', 'RcHm_v2.0_Chr1g0362791' => 'rch', 'RcHm_v2.0_Chr3g0466281' => 'rch', 'RcHm_v2.0_Chr7g0201481' => 'rch', 'Rhsim01G0148600' => 'rsi', 'Rhsim05G0194400' => 'rsi', 'Rhsim07G0000700' => 'rsi', 'Rhsim07G0000800' => 'rsi', 'Rhsim07G0027900' => 'rsi', 'Rhsim09G0149500' => 'rsi', 'RhsimUnG0186900' => 'rsi', 'Sabra01G0089900' => 'sbr', 'Sabra02G0114700' => 'sbr', 'Sabra02G0116300' => 'sbr', 'Sabra03G0080100' => 'sbr', 'Sabra08G0024300' => 'sbr', 'Sabra10G0174300' => 'sbr', 'Sabra14G0048900' => 'sbr', 'Sabra14G0076500' => 'sbr', 'SalBow5G2513' => 'sbo', 'Sc01g0002300' => 'sci', 'Sc01g0004450' => 'sci', 'Sc06g0001680' => 'sci', 'Sc23g0003580' => 'sci', 'Sed0000913' => 'sed', 'Sed0001655' => 'sed', 'Sed0007745' => 'sed', 'Sed0010951' => 'sed', 'Sed0017599' => 'sed', 'Sed0021405' => 'sed', 'Sed0022810' => 'sed', 'SEGI_07099' => 'sgi', 'SEGI_11931' => 'sgi', 'SEGI_13187' => 'sgi', 'SEGI_29958' => 'sgi', 'SEGI_36351' => 'sgi', 'SGA_v2.0_scaffold126G33770' => 'sas', 'SGA_v2.0_scaffold153G37003' => 'sas', 'SGA_v2.0_scaffold2G01359' => 'sas', 'SGA_v2.0_scaffold5G03064' => 'sas', 'SGA_v2.0_scaffold95G28903' => 'sas', 'SHI12701' => 'shi', 'SHI26410' => 'shi', 'SHI38997' => 'shi', 'SHI53759' => 'shi', 'SHI53886' => 'shi', 'SHI54714' => 'shi', 'SMO011G0041' => 'smo', 'SMO146G0251' => 'smo', 'SMO160G0004' => 'smo', 'SMO174G0057' => 'smo', 'SMO244G0089' => 'smo', 'SMO296G0011' => 'smo', 'Solyc01g091280.3' => 'sly', 'Solyc05g047610.3' => 'sly', 'Solyc05g047640.3' => 'sly', 'Solyc05g055630.3' => 'sly', 'Solyc10g018160.2' => 'sly', 'Solyc10g084820.2' => 'sly', 'Solyc10g086565.2' => 'sly', 'Sopen01g037030' => 'spe', 'Sopen05g027920' => 'spe', 'Sopen05g034070' => 'spe', 'Sopen10g007260' => 'spe', 'Sopen10g034260' => 'spe', 'Sopen10g035950' => 'spe', 'Sp3g07710' => 'spa', 'Sp4g27420' => 'spa', 'Sp5g02450' => 'spa', 'Sp6g01280' => 'spa', 'Sp6g38480' => 'spa', 'Sp7g20780' => 'spa', 'TAR374G1413' => 'tar', 'TAR623G1777' => 'tar', 'TAR629G2370' => 'tar', 'TAR633G1759' => 'tar', 'TAR636G3387' => 'tar', 'THA.LOC104802447' => 'tha', 'THA.LOC104813916' => 'tha', 'THA.LOC104816423' => 'tha', 'THA.LOC104817246' => 'tha', 'THA.LOC104825895' => 'tha', 'Thecc.01G335200' => 'tca', 'Thecc.01G377400' => 'tca', 'Thecc.03G262200' => 'tca', 'Thecc.05G036800' => 'tca', 'Thecc.10G080500' => 'tca', 'Thecc.10G080800' => 'tca', 'Thhalv10001560m.g' => 'esa', 'Thhalv10006120m.g' => 'esa', 'Thhalv10014375m.g' => 'esa', 'Thhalv10021264m.g' => 'esa', 'Thhalv10028856m.g' => 'esa', 'TPR.G1914' => 'tpr', 'TPR.G4757' => 'tpr', 'TPR.G5595' => 'tpr', 'TWI14G0952' => 'twi', 'TWI14G1307' => 'twi', 'TWI38G2143' => 'twi', 'TWI59G0826' => 'twi', 'TWI77G0527' => 'twi', 'TWI81G0150' => 'twi', 'unitig_21.g21018' => 'ugi', 'unitig_26.g9725' => 'ugi', 'unitig_744.g24653' => 'ugi', 'unitig_749.g13778' => 'ugi', 'unitig_899.g15035' => 'ugi', 'vmacro04296' => 'vma', 'vmacro04852' => 'vma', 'vmacro13404' => 'vma', 'vmacro20169' => 'vma', 'vmacro21014' => 'vma', 'VMungo0331G0237' => 'vmu', 'VMungo0331G0706' => 'vmu', 'VMungo0331G1361' => 'vmu', 'VMungo0331G1489' => 'vmu', 'VMungo0540G1037' => 'vmu', 'VMungo0720G2487' => 'vmu', 'VMungo0720G2721' => 'vmu', 'Zm00001eb086860' => 'zma', 'Zm00001eb104760' => 'zma', 'Zm00001eb148220' => 'zma', 'Zm00001eb259030' => 'zma', 'Zm00001eb289590' => 'zma', 'Zm00001eb420150' => 'zma' ), 'gf_id' => 'HOM05D000968', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000968' ), 'data_identifier' => 'HOM05D000968', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000968', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p31690' => 'bna', 'A03p36040' => 'bna', 'A03p53730' => 'bna', 'A04p01410' => 'bna', 'A05p05420' => 'bna', 'A05p39630' => 'bna', 'A05p39640' => 'bna', 'A09p00970' => 'bna', 'A09p53060' => 'bna', 'A10p31890' => 'bna', 'Aa31LG10G15040' => 'aar', 'Aa31LG1G21090' => 'aar', 'Aa31LG1G26900' => 'aar', 'Aa31LG3G1820' => 'aar', 'Aa31LG5G1100' => 'aar', 'Aa31LG6G4740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2265' => 'aag', 'Actinidia07998' => 'ach', 'Actinidia11266' => 'ach', 'Actinidia12682' => 'ach', 'Actinidia26479' => 'ach', 'Actinidia31406' => 'ach', 'Actinidia32437' => 'ach', 'Actinidia38862' => 'ach', 'Ah.05g174230' => 'amhyb', 'Ah.05g179070' => 'amhyb', 'Ah.05g179090' => 'amhyb', 'Ah.12g059950' => 'amhyb', 'AL3G20480' => 'aly', 'AL4G44520' => 'aly', 'AL5G43110' => 'aly', 'AL6G13890' => 'aly', 'AL6G52620' => 'aly', 'AL7G30830' => 'aly', 'Aqoxy1G00899' => 'aox', 'Aqoxy5G04333' => 'aox', 'Aqoxy7G00641' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3IZ0NN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4EF6AW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W9P8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79GA3M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C43NQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFCU6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G95YVJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCHK29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LU1UG8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX91RN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGB4B1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8DA0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9H7JI' => 'arhy', 'AT3G09320' => 'ath', 'AT3G60800' => 'ath', 'AT4G00840' => 'ath', 'AT4G22750' => 'ath', 'AT5G04270' => 'ath', 'ATR0090G003' => 'atr', 'ATR0559G349' => 'atr', 'ATR0680G261' => 'atr', 'ATR0810G048' => 'atr', 'Atru.chr12.831' => 'acertr', 'Atru.chr5.303' => 'acertr', 'Atru.chr5.748' => 'acertr', 'Atru.chr8.1999' => 'acertr', 'Atru.chr9.1436' => 'acertr', 'AUR62004211' => 'cqu', 'AUR62004548' => 'cqu', 'AUR62013637' => 'cqu', 'AUR62022662' => 'cqu', 'AUR62025777' => 'cqu', 'AUR62042386' => 'cqu', 'BcaB01g02310' => 'bca', 'BcaB01g06062' => 'bca', 'BcaB02g08975' => 'bca', 'BcaB02g08980' => 'bca', 'BcaC01g04228' => 'bca', 'BcaC01g06830' => 'bca', 'BcaC02g10186' => 'bca', 'BcaC02g12214' => 'bca', 'BcaC04g24101' => 'bca', 'BcaC05g29520' => 'bca', 'BcaC05g29661' => 'bca', 'BcaC06g32130' => 'bca', 'BcaC06g32131' => 'bca', 'BcaC07g40601' => 'bca', 'BcaC07g42641' => 'bca', 'BcaNung01038' => 'bca', 'BcaNung01676' => 'bca', 'BcaNung02480' => 'bca', 'BcaNung07376' => 'bca', 'BolC3t16146H' => 'bol', 'BolC3t16637H' => 'bol', 'BolC4t22257H' => 'bol', 'BolC4t24728H' => 'bol', 'BolC5t34517H' => 'bol', 'BolC7t45703H' => 'bol', 'BolC8t51166H' => 'bol', 'BolC9t53038H' => 'bol', 'BolC9t60000H' => 'bol', 'BraA01t01345Z' => 'bra', 'BraA01t01346Z' => 'bra', 'BraA01t01348Z' => 'bra', 'BraA03t12347Z' => 'bra', 'BraA03t12775Z' => 'bra', 'BraA03t14439Z' => 'bra', 'BraA04t15860Z' => 'bra', 'BraA05t19511Z' => 'bra', 'BraA05t22746Z' => 'bra', 'BraA09t35767Z' => 'bra', 'BraA09t40732Z' => 'bra', 'BraA10t45233Z' => 'bra', 'C03p38720' => 'bna', 'C03p43680' => 'bna', 'C04p06350' => 'bna', 'C04p31800' => 'bna', 'C05p58680' => 'bna', 'C07p52110' => 'bna', 'C08p35760' => 'bna', 'C09p01050' => 'bna', 'C09p72600' => 'bna', 'CAN.G106.2' => 'can', 'CAN.G1482.1' => 'can', 'CAN.G324.12' => 'can', 'CAN.G388.20' => 'can', 'CAN.G412.7' => 'can', 'CAN.G694.32' => 'can', 'CAN.G92.12' => 'can', 'CANSAT11G2353' => 'cansat', 'CANSAT21G1398' => 'cansat', 'CANSAT56G2456' => 'cansat', 'CANSAT56G3031' => 'cansat', 'CANSAT56G4539' => 'cansat', 'CARHR083680' => 'chi', 'CARHR171190' => 'chi', 'CARHR209010' => 'chi', 'CARHR229680' => 'chi', 'CARHR249490' => 'chi', 'Carub.0003s0844' => 'cru', 'Carub.0005s2755' => 'cru', 'Carub.0006s0322' => 'cru', 'Carub.0006s3586' => 'cru', 'Carub.0007s1855' => 'cru', 'Ca_07808_v3' => 'car', 'Ca_09535_v3' => 'car', 'Ca_10548_v3' => 'car', 'Ca_19913_v3' => 'car', 'Ca_19916_v3' => 'car', 'Ca_19975_v3' => 'car', 'CBR_g22876' => 'cbr', 'CBR_g22879' => 'cbr', 'CBR_g38491' => 'cbr', 'CBR_g54185' => 'cbr', 'CBR_g54190' => 'cbr', 'Cc02_g11020' => 'ccan', 'Cc02_g23920' => 'ccan', 'Cc02_g39860' => 'ccan', 'Cc02_g39870' => 'ccan', 'Cc03_g06760' => 'ccan', 'Cc06_g02450' => 'ccan', 'Cc09_g09450' => 'ccan', 'CDE02G1959' => 'cde', 'CDE04G0600' => 'cde', 'CDE07G1996' => 'cde', 'CDE07G2078' => 'cde', 'CDE11G0611' => 'cde', 'Cfa001683' => 'cfa', 'Cfa001734' => 'cfa', 'Cfa001737' => 'cfa', 'Cfa003751' => 'cfa', 'Cfa012019' => 'cfa', 'Cfa017353' => 'cfa', 'Cfa017732' => 'cfa', 'Cfa022464' => 'cfa', 'Ciclev10012400m.g' => 'ccl', 'Ciclev10021242m.g' => 'ccl', 'Ciclev10021302m.g' => 'ccl', 'Ciclev10021463m.g' => 'ccl', 'Ciclev10032359m.g' => 'ccl', 'CiPaw.01G081000' => 'cil', 'CiPaw.01G262500' => 'cil', 'CiPaw.01G269800' => 'cil', 'CiPaw.02G168400' => 'cil', 'CiPaw.05G119500' => 'cil', 'CiPaw.11G147300' => 'cil', 'ClCG01G003630' => 'cla', 'ClCG05G000510' => 'cla', 'ClCG05G002300' => 'cla', 'ClCG08G007650' => 'cla', 'ClCG10G021250' => 'cla', 'COL.COLO4_06218' => 'col', 'COL.COLO4_12538' => 'col', 'COL.COLO4_14775' => 'col', 'COL.COLO4_23875' => 'col', 'Cpa.g.sc141.16' => 'cpa', 'Cpa.g.sc169.16' => 'cpa', 'Cpa.g.sc244.4' => 'cpa', 'Cpa.g.sc244.5' => 'cpa', 'Cpa.g.sc29.87' => 'cpa', 'Cpa.g.sc53.115' => 'cpa', 'Cre03.g207502' => 'cre', 'Cre06.g277000' => 'cre', 'Cre09.g394050' => 'cre', 'CsaV3_3G007680' => 'csa', 'CsaV3_3G009710' => 'csa', 'CsaV3_3G034790' => 'csa', 'CsaV3_5G003750' => 'csa', 'CsaV3_6G036620' => 'csa', 'CSS0002288' => 'camsi', 'CSS0011250' => 'camsi', 'CSS0021619' => 'camsi', 'CSS0046701' => 'camsi', 'DCAR_006420' => 'dca', 'DCAR_006865' => 'dca', 'DCAR_008558' => 'dca', 'DCAR_028754' => 'dca', 'DCAR_028755' => 'dca', 'Dinv31218' => 'din', 'Dinv32371' => 'din', 'Dinv34250' => 'din', 'Dinv37156' => 'din', 'Dinv43704' => 'din', 'Duzib093G1811' => 'dzi', 'Duzib106G1622' => 'dzi', 'Duzib114G0504' => 'dzi', 'Duzib128G0338' => 'dzi', 'Duzib128G1577' => 'dzi', 'Duzib133G0104' => 'dzi', 'Duzib133G1080' => 'dzi', 'Duzib138G0324' => 'dzi', 'Duzib138G0394' => 'dzi', 'Duzib205G0122' => 'dzi', 'Duzib268G1020' => 'dzi', 'Duzib268G1359' => 'dzi', 'ECA232G3929' => 'eca', 'ECA236G2210' => 'eca', 'ECA236G2287' => 'eca', 'ECA240G4568' => 'eca', 'ECA247G0894' => 'eca', 'EL10Ac1g00200' => 'bvu', 'EL10Ac1g00886' => 'bvu', 'EL10As1g23091' => 'bvu', 'EL10As1g23092' => 'bvu', 'Eucgr.A01284' => 'egr', 'Eucgr.A01285' => 'egr', 'Eucgr.D02456' => 'egr', 'Eucgr.E00018' => 'egr', 'Eucgr.E01439' => 'egr', 'Eucgr.G02859' => 'egr', 'FAN01G0168' => 'fan', 'FAN01G0453' => 'fan', 'FAN01G2761' => 'fan', 'FAN02G1239' => 'fan', 'FAN03G0645' => 'fan', 'FAN03G2707' => 'fan', 'FAN03G2978' => 'fan', 'FAN04G0227' => 'fan', 'FAN06G0091' => 'fan', 'FAN06G1418' => 'fan', 'FAN06G1512' => 'fan', 'FAN06G1986' => 'fan', 'FAN06G2905' => 'fan', 'FAN06G4325' => 'fan', 'FAN08G0033' => 'fan', 'FAN09G0642' => 'fan', 'FAN10G1763' => 'fan', 'FAN10G2026' => 'fan', 'FAN10G2513' => 'fan', 'FAN10G3402' => 'fan', 'FAN10G3564' => 'fan', 'FAN10G3987' => 'fan', 'FAN13G1490' => 'fan', 'FAN14G5857' => 'fan', 'FAN18G1188' => 'fan', 'FvH4_5g00750' => 'fve', 'FvH4_6g13410' => 'fve', 'FvH4_7g11740' => 'fve', 'FvH4_7g17410' => 'fve', 'FvH4_7g18860' => 'fve', 'Glyma.01G099100' => 'gma', 'Glyma.01G142300' => 'gma', 'Glyma.03G025500' => 'gma', 'Glyma.03G069700' => 'gma', 'Glyma.03G260000' => 'gma', 'Glyma.09G269800' => 'gma', 'Glyma.10G208700' => 'gma', 'Glyma.18G220400' => 'gma', 'Glyma.20G182000' => 'gma', 'Gohir.A01G221726' => 'ghi', 'Gohir.A07G134600' => 'ghi', 'Gohir.A07G146000' => 'ghi', 'Gohir.A08G173900' => 'ghi', 'Gohir.A09G194900' => 'ghi', 'Gohir.A10G204100' => 'ghi', 'Gohir.A11G080600' => 'ghi', 'Gohir.A11G327500' => 'ghi', 'Gohir.A12G101800' => 'ghi', 'Gohir.D01G211200' => 'ghi', 'Gohir.D07G139200' => 'ghi', 'Gohir.D07G152100' => 'ghi', 'Gohir.D08G192600' => 'ghi', 'Gohir.D09G189200' => 'ghi', 'Gohir.D10G212000' => 'ghi', 'Gohir.D11G085200' => 'ghi', 'Gohir.D11G346400' => 'ghi', 'Gohir.D12G104800' => 'ghi', 'Gorai.001G151300' => 'gra', 'Gorai.001G174100' => 'gra', 'Gorai.002G257000' => 'gra', 'Gorai.004G202600' => 'gra', 'Gorai.007G090900' => 'gra', 'Gorai.007G376700' => 'gra', 'Gorai.008G114100' => 'gra', 'Gorai.011G237900' => 'gra', 'GSVIVG01005450001' => 'vvi', 'GSVIVG01016232001' => 'vvi', 'GSVIVG01026157001' => 'vvi', 'GSVIVG01027419001' => 'vvi', 'GSVIVG01027631001' => 'vvi', 'GSVIVG01034143001' => 'vvi', 'HanXRQChr03g0093921' => 'han', 'HanXRQChr04g0120001' => 'han', 'HanXRQChr04g0122561' => 'han', 'HanXRQChr09g0246851' => 'han', 'HanXRQChr10g0293311' => 'han', 'HanXRQChr13g0425231' => 'han', 'HanXRQChr16g0532571' => 'han', 'Haze_09050' => 'cav', 'Haze_15715' => 'cav', 'Haze_15716' => 'cav', 'Haze_16803' => 'cav', 'Haze_16850' => 'cav', 'Hma1.2p1_0301F.1_g118655' => 'hma', 'Hma1.2p1_0309F.1_g120590' => 'hma', 'Hma1.2p1_0936F.1_g238900' => 'hma', 'Hma1.2p1_3552F.1_g336740' => 'hma', 'HPP92_003520' => 'vpl', 'HPP92_006628' => 'vpl', 'HPP92_006645' => 'vpl', 'HPP92_014669' => 'vpl', 'HPP92_015077' => 'vpl', 'Hund16742' => 'sun', 'Hund17022' => 'sun', 'Lalb_Chr02g0152131' => 'lal', 'Lalb_Chr05g0225371' => 'lal', 'Lalb_Chr07g0189841' => 'lal', 'Lalb_Chr07g0192961' => 'lal', 'Lalb_Chr12g0208221' => 'lal', 'Lalb_Chr13g0291211' => 'lal', 'Lalb_Chr13g0291781' => 'lal', 'Lalb_Chr18g0044651' => 'lal', 'Lalb_Chr21g0313731' => 'lal', 'Lj1g0022533' => 'lja', 'Lj2A18T50' => 'lonja', 'Lj2A92G93' => 'lonja', 'Lj3A965T73' => 'lonja', 'Lj3g0000673' => 'lja', 'Lj3g0002666' => 'lja', 'Lj4g0016985' => 'lja', 'Lj5g0003625' => 'lja', 'Lj7A529G36' => 'lonja', 'Lj9A569T49' => 'lonja', 'Lj9A604T63' => 'lonja', 'Lsat_1_v5_gn_3_132060' => 'lsa', 'Lsat_1_v5_gn_4_68941' => 'lsa', 'Lsat_1_v5_gn_5_95580' => 'lsa', 'Lsat_1_v5_gn_7_161' => 'lsa', 'Lsat_1_v5_gn_7_7041' => 'lsa', 'Lsat_1_v5_gn_9_33481' => 'lsa', 'Lsat_1_v5_gn_9_68260' => 'lsa', 'Manes.01G073100' => 'mes', 'Manes.01G266300' => 'mes', 'Manes.02G033300' => 'mes', 'Manes.05G017900' => 'mes', 'Manes.05G046100' => 'mes', 'Manes.08G080900' => 'mes', 'Manes.10G049400' => 'mes', 'Mapoly0009s0186' => 'mpo', 'Mapoly0036s0118' => 'mpo', 'Mapoly0101s0046' => 'mpo', 'MBI04_g30218_MAGBIO' => 'mbi', 'MBI04_g35564_MAGBIO' => 'mbi', 'MBI12_g34011_MAGBIO' => 'mbi', 'MBI14_g04655_MAGBIO' => 'mbi', 'MCO07G653' => 'mco', 'MCO10G173' => 'mco', 'MD01G1087100' => 'mdo', 'MD01G1104200' => 'mdo', 'MD02G1205100' => 'mdo', 'MD04G1079200' => 'mdo', 'MD04G1131400' => 'mdo', 'MD07G1121600' => 'mdo', 'MD07G1157300' => 'mdo', 'MD07G1171000' => 'mdo', 'MD12G1144500' => 'mdo', 'Medtr1g094610' => 'mtr', 'Medtr4g021795' => 'mtr', 'Medtr4g023760' => 'mtr', 'Medtr7g118050' => 'mtr', 'MELO3C005582.2' => 'cme', 'MELO3C005989.2' => 'cme', 'MELO3C006192.2' => 'cme', 'MELO3C009248.2' => 'cme', 'MELO3C019817.2' => 'cme', 'Migut.B01625' => 'egut', 'Migut.B01915' => 'egut', 'Migut.F01721' => 'egut', 'Migut.J00314' => 'egut', 'MSTRG.20742' => 'ama', 'MSTRG.8134' => 'ama', 'Nitab4.5_0000096g0010' => 'nta', 'Nitab4.5_0000202g0030' => 'nta', 'Nitab4.5_0000216g0370' => 'nta', 'Nitab4.5_0000457g0230' => 'nta', 'Nitab4.5_0001702g0170' => 'nta', 'Nitab4.5_0003607g0010' => 'nta', 'Nitab4.5_0004917g0020' => 'nta', 'Nitab4.5_0007059g0010' => 'nta', 'Nitab4.5_0007184g0010' => 'nta', 'Nitab4.5_0007346g0020' => 'nta', 'Nn1g00410' => 'nnu', 'Nn1g01252' => 'nnu', 'Nn2g11168' => 'nnu', 'Nn2g13403' => 'nnu', 'Nn2g13760' => 'nnu', 'Nn4g26380' => 'nnu', 'Oeu000806.2' => 'oeu', 'Oeu005788.1' => 'oeu', 'Oeu006900.3' => 'oeu', 'Oeu007797.1' => 'oeu', 'Oeu011932.1' => 'oeu', 'Oeu022739.1' => 'oeu', 'Oeu037918.1' => 'oeu', 'Oeu055490.2' => 'oeu', 'Os01g0844400' => 'osa', 'Os02g0819100' => 'osa', 'Os03g0804300' => 'osa', 'Os05g0458000' => 'osa', 'Os07g0467800' => 'osa', 'Os12g0602200' => 'osa', 'Peaxi162Scf00013g03444' => 'pax', 'Peaxi162Scf00094g01120' => 'pax', 'Peaxi162Scf00191g01211' => 'pax', 'Peaxi162Scf00238g01110' => 'pax', 'Peaxi162Scf00330g00719' => 'pax', 'Peaxi162Scf00627g00018' => 'pax', 'PGR031G2686' => 'pgr', 'PGR042G0809' => 'pgr', 'PGR142G0193' => 'pgr', 'PGSC0003DMG400011066' => 'stu', 'PGSC0003DMG400012041' => 'stu', 'PGSC0003DMG400013678' => 'stu', 'PGSC0003DMG400023477' => 'stu', 'PGSC0003DMG400025956' => 'stu', 'PGSC0003DMG401019151' => 'stu', 'Phvul.006G116400' => 'pvu', 'Phvul.007G097300' => 'pvu', 'Phvul.010G015000' => 'pvu', 'Phvul.010G083900' => 'pvu', 'Potri.001G117100' => 'ptr', 'Potri.002G147300' => 'ptr', 'Potri.003G115600' => 'ptr', 'Potri.006G087400' => 'ptr', 'Potri.010G226100' => 'ptr', 'Potri.014G069200' => 'ptr', 'Potri.014G104000' => 'ptr', 'Potri.016G100200' => 'ptr', 'Pp3c10_20450' => 'ppa', 'Pp3c1_42400' => 'ppa', 'Pp3c3_24390' => 'ppa', 'Pp3c3_2860' => 'ppa', 'PRCOL_00003193' => 'pco', 'Prupe.2G144500' => 'ppe', 'Prupe.2G195700' => 'ppe', 'Prupe.2G209800' => 'ppe', 'Prupe.5G080000' => 'ppe', 'Prupe.6G257900' => 'ppe', 'Psat3g001160' => 'psa', 'Psat6g181880' => 'psa', 'Psat7g233720' => 'psa', 'PSO063G7587' => 'pso', 'PSO339G2145' => 'pso', 'PSO339G3369' => 'pso', 'PSO478G2747' => 'pso', 'PSO513G0140' => 'pso', 'PSO782G1614' => 'pso', 'PSO782G4889' => 'pso', 'PSO782G5485' => 'pso', 'PSO801G0241' => 'pso', 'QL07p048854' => 'qlo', 'QL08p046745' => 'qlo', 'QL08p052606' => 'qlo', 'QL08p053414' => 'qlo', 'QL08p054868' => 'qlo', 'RcHm_v2.0_Chr1g0350251' => 'rch', 'RcHm_v2.0_Chr1g0360851' => 'rch', 'RcHm_v2.0_Chr1g0362791' => 'rch', 'RcHm_v2.0_Chr3g0466281' => 'rch', 'RcHm_v2.0_Chr7g0201481' => 'rch', 'Rhsim01G0148600' => 'rsi', 'Rhsim05G0194400' => 'rsi', 'Rhsim07G0000700' => 'rsi', 'Rhsim07G0000800' => 'rsi', 'Rhsim07G0027900' => 'rsi', 'Rhsim09G0149500' => 'rsi', 'RhsimUnG0186900' => 'rsi', 'Sabra01G0089900' => 'sbr', 'Sabra02G0114700' => 'sbr', 'Sabra02G0116300' => 'sbr', 'Sabra03G0080100' => 'sbr', 'Sabra08G0024300' => 'sbr', 'Sabra10G0174300' => 'sbr', 'Sabra14G0048900' => 'sbr', 'Sabra14G0076500' => 'sbr', 'SalBow5G2513' => 'sbo', 'Sc01g0002300' => 'sci', 'Sc01g0004450' => 'sci', 'Sc06g0001680' => 'sci', 'Sc23g0003580' => 'sci', 'Sed0000913' => 'sed', 'Sed0001655' => 'sed', 'Sed0007745' => 'sed', 'Sed0010951' => 'sed', 'Sed0017599' => 'sed', 'Sed0021405' => 'sed', 'Sed0022810' => 'sed', 'SEGI_07099' => 'sgi', 'SEGI_11931' => 'sgi', 'SEGI_13187' => 'sgi', 'SEGI_29958' => 'sgi', 'SEGI_36351' => 'sgi', 'SGA_v2.0_scaffold126G33770' => 'sas', 'SGA_v2.0_scaffold153G37003' => 'sas', 'SGA_v2.0_scaffold2G01359' => 'sas', 'SGA_v2.0_scaffold5G03064' => 'sas', 'SGA_v2.0_scaffold95G28903' => 'sas', 'SHI12701' => 'shi', 'SHI26410' => 'shi', 'SHI38997' => 'shi', 'SHI53759' => 'shi', 'SHI53886' => 'shi', 'SHI54714' => 'shi', 'SMO011G0041' => 'smo', 'SMO146G0251' => 'smo', 'SMO160G0004' => 'smo', 'SMO174G0057' => 'smo', 'SMO244G0089' => 'smo', 'SMO296G0011' => 'smo', 'Solyc01g091280.3' => 'sly', 'Solyc05g047610.3' => 'sly', 'Solyc05g047640.3' => 'sly', 'Solyc05g055630.3' => 'sly', 'Solyc10g018160.2' => 'sly', 'Solyc10g084820.2' => 'sly', 'Solyc10g086565.2' => 'sly', 'Sopen01g037030' => 'spe', 'Sopen05g027920' => 'spe', 'Sopen05g034070' => 'spe', 'Sopen10g007260' => 'spe', 'Sopen10g034260' => 'spe', 'Sopen10g035950' => 'spe', 'Sp3g07710' => 'spa', 'Sp4g27420' => 'spa', 'Sp5g02450' => 'spa', 'Sp6g01280' => 'spa', 'Sp6g38480' => 'spa', 'Sp7g20780' => 'spa', 'TAR374G1413' => 'tar', 'TAR623G1777' => 'tar', 'TAR629G2370' => 'tar', 'TAR633G1759' => 'tar', 'TAR636G3387' => 'tar', 'THA.LOC104802447' => 'tha', 'THA.LOC104813916' => 'tha', 'THA.LOC104816423' => 'tha', 'THA.LOC104817246' => 'tha', 'THA.LOC104825895' => 'tha', 'Thecc.01G335200' => 'tca', 'Thecc.01G377400' => 'tca', 'Thecc.03G262200' => 'tca', 'Thecc.05G036800' => 'tca', 'Thecc.10G080500' => 'tca', 'Thecc.10G080800' => 'tca', 'Thhalv10001560m.g' => 'esa', 'Thhalv10006120m.g' => 'esa', 'Thhalv10014375m.g' => 'esa', 'Thhalv10021264m.g' => 'esa', 'Thhalv10028856m.g' => 'esa', 'TPR.G1914' => 'tpr', 'TPR.G4757' => 'tpr', 'TPR.G5595' => 'tpr', 'TWI14G0952' => 'twi', 'TWI14G1307' => 'twi', 'TWI38G2143' => 'twi', 'TWI59G0826' => 'twi', 'TWI77G0527' => 'twi', 'TWI81G0150' => 'twi', 'unitig_21.g21018' => 'ugi', 'unitig_26.g9725' => 'ugi', 'unitig_744.g24653' => 'ugi', 'unitig_749.g13778' => 'ugi', 'unitig_899.g15035' => 'ugi', 'vmacro04296' => 'vma', 'vmacro04852' => 'vma', 'vmacro13404' => 'vma', 'vmacro20169' => 'vma', 'vmacro21014' => 'vma', 'VMungo0331G0237' => 'vmu', 'VMungo0331G0706' => 'vmu', 'VMungo0331G1361' => 'vmu', 'VMungo0331G1489' => 'vmu', 'VMungo0540G1037' => 'vmu', 'VMungo0720G2487' => 'vmu', 'VMungo0720G2721' => 'vmu', 'Zm00001eb086860' => 'zma', 'Zm00001eb104760' => 'zma', 'Zm00001eb148220' => 'zma', 'Zm00001eb259030' => 'zma', 'Zm00001eb289590' => 'zma', 'Zm00001eb420150' => 'zma' ) $gf_id = 'HOM05D000968' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000968' ) $data_identifier = 'HOM05D000968' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 19, 'bol' => (int) 9, 'bra' => (int) 12, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 5, 'ccan' => (int) 7, 'cde' => (int) 5, 'cfa' => (int) 8, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 4, 'dca' => (int) 5, 'din' => (int) 5, 'dzi' => (int) 12, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 25, 'fve' => (int) 5, 'gma' => (int) 9, 'ghi' => (int) 18, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 7, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 5, 'sun' => (int) 2, 'lal' => (int) 9, 'lja' => (int) 5, 'lonja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 9, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 2, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 3, 'stu' => (int) 6, 'pvu' => (int) 4, 'ptr' => (int) 8, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 3, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 1, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 5, 'sas' => (int) 5, 'shi' => (int) 6, 'smo' => (int) 6, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 3, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420150' $species_info = array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ) $local_species = 'bol' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000968', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p31690' => 'bna', 'A03p36040' => 'bna', 'A03p53730' => 'bna', 'A04p01410' => 'bna', 'A05p05420' => 'bna', 'A05p39630' => 'bna', 'A05p39640' => 'bna', 'A09p00970' => 'bna', 'A09p53060' => 'bna', 'A10p31890' => 'bna', 'Aa31LG10G15040' => 'aar', 'Aa31LG1G21090' => 'aar', 'Aa31LG1G26900' => 'aar', 'Aa31LG3G1820' => 'aar', 'Aa31LG5G1100' => 'aar', 'Aa31LG6G4740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2265' => 'aag', 'Actinidia07998' => 'ach', 'Actinidia11266' => 'ach', 'Actinidia12682' => 'ach', 'Actinidia26479' => 'ach', 'Actinidia31406' => 'ach', 'Actinidia32437' => 'ach', 'Actinidia38862' => 'ach', 'Ah.05g174230' => 'amhyb', 'Ah.05g179070' => 'amhyb', 'Ah.05g179090' => 'amhyb', 'Ah.12g059950' => 'amhyb', 'AL3G20480' => 'aly', 'AL4G44520' => 'aly', 'AL5G43110' => 'aly', 'AL6G13890' => 'aly', 'AL6G52620' => 'aly', 'AL7G30830' => 'aly', 'Aqoxy1G00899' => 'aox', 'Aqoxy5G04333' => 'aox', 'Aqoxy7G00641' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3IZ0NN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4EF6AW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W9P8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79GA3M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C43NQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFCU6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G95YVJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCHK29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LU1UG8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX91RN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGB4B1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8DA0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9H7JI' => 'arhy', 'AT3G09320' => 'ath', 'AT3G60800' => 'ath', 'AT4G00840' => 'ath', 'AT4G22750' => 'ath', 'AT5G04270' => 'ath', 'ATR0090G003' => 'atr', 'ATR0559G349' => 'atr', 'ATR0680G261' => 'atr', 'ATR0810G048' => 'atr', 'Atru.chr12.831' => 'acertr', 'Atru.chr5.303' => 'acertr', 'Atru.chr5.748' => 'acertr', 'Atru.chr8.1999' => 'acertr', 'Atru.chr9.1436' => 'acertr', 'AUR62004211' => 'cqu', 'AUR62004548' => 'cqu', 'AUR62013637' => 'cqu', 'AUR62022662' => 'cqu', 'AUR62025777' => 'cqu', 'AUR62042386' => 'cqu', 'BcaB01g02310' => 'bca', 'BcaB01g06062' => 'bca', 'BcaB02g08975' => 'bca', 'BcaB02g08980' => 'bca', 'BcaC01g04228' => 'bca', 'BcaC01g06830' => 'bca', 'BcaC02g10186' => 'bca', 'BcaC02g12214' => 'bca', 'BcaC04g24101' => 'bca', 'BcaC05g29520' => 'bca', 'BcaC05g29661' => 'bca', 'BcaC06g32130' => 'bca', 'BcaC06g32131' => 'bca', 'BcaC07g40601' => 'bca', 'BcaC07g42641' => 'bca', 'BcaNung01038' => 'bca', 'BcaNung01676' => 'bca', 'BcaNung02480' => 'bca', 'BcaNung07376' => 'bca', 'BolC3t16146H' => 'bol', 'BolC3t16637H' => 'bol', 'BolC4t22257H' => 'bol', 'BolC4t24728H' => 'bol', 'BolC5t34517H' => 'bol', 'BolC7t45703H' => 'bol', 'BolC8t51166H' => 'bol', 'BolC9t53038H' => 'bol', 'BolC9t60000H' => 'bol', 'BraA01t01345Z' => 'bra', 'BraA01t01346Z' => 'bra', 'BraA01t01348Z' => 'bra', 'BraA03t12347Z' => 'bra', 'BraA03t12775Z' => 'bra', 'BraA03t14439Z' => 'bra', 'BraA04t15860Z' => 'bra', 'BraA05t19511Z' => 'bra', 'BraA05t22746Z' => 'bra', 'BraA09t35767Z' => 'bra', 'BraA09t40732Z' => 'bra', 'BraA10t45233Z' => 'bra', 'C03p38720' => 'bna', 'C03p43680' => 'bna', 'C04p06350' => 'bna', 'C04p31800' => 'bna', 'C05p58680' => 'bna', 'C07p52110' => 'bna', 'C08p35760' => 'bna', 'C09p01050' => 'bna', 'C09p72600' => 'bna', 'CAN.G106.2' => 'can', 'CAN.G1482.1' => 'can', 'CAN.G324.12' => 'can', 'CAN.G388.20' => 'can', 'CAN.G412.7' => 'can', 'CAN.G694.32' => 'can', 'CAN.G92.12' => 'can', 'CANSAT11G2353' => 'cansat', 'CANSAT21G1398' => 'cansat', 'CANSAT56G2456' => 'cansat', 'CANSAT56G3031' => 'cansat', 'CANSAT56G4539' => 'cansat', 'CARHR083680' => 'chi', 'CARHR171190' => 'chi', 'CARHR209010' => 'chi', 'CARHR229680' => 'chi', 'CARHR249490' => 'chi', 'Carub.0003s0844' => 'cru', 'Carub.0005s2755' => 'cru', 'Carub.0006s0322' => 'cru', 'Carub.0006s3586' => 'cru', 'Carub.0007s1855' => 'cru', 'Ca_07808_v3' => 'car', 'Ca_09535_v3' => 'car', 'Ca_10548_v3' => 'car', 'Ca_19913_v3' => 'car', 'Ca_19916_v3' => 'car', 'Ca_19975_v3' => 'car', 'CBR_g22876' => 'cbr', 'CBR_g22879' => 'cbr', 'CBR_g38491' => 'cbr', 'CBR_g54185' => 'cbr', 'CBR_g54190' => 'cbr', 'Cc02_g11020' => 'ccan', 'Cc02_g23920' => 'ccan', 'Cc02_g39860' => 'ccan', 'Cc02_g39870' => 'ccan', 'Cc03_g06760' => 'ccan', 'Cc06_g02450' => 'ccan', 'Cc09_g09450' => 'ccan', 'CDE02G1959' => 'cde', 'CDE04G0600' => 'cde', 'CDE07G1996' => 'cde', 'CDE07G2078' => 'cde', 'CDE11G0611' => 'cde', 'Cfa001683' => 'cfa', 'Cfa001734' => 'cfa', 'Cfa001737' => 'cfa', 'Cfa003751' => 'cfa', 'Cfa012019' => 'cfa', 'Cfa017353' => 'cfa', 'Cfa017732' => 'cfa', 'Cfa022464' => 'cfa', 'Ciclev10012400m.g' => 'ccl', 'Ciclev10021242m.g' => 'ccl', 'Ciclev10021302m.g' => 'ccl', 'Ciclev10021463m.g' => 'ccl', 'Ciclev10032359m.g' => 'ccl', 'CiPaw.01G081000' => 'cil', 'CiPaw.01G262500' => 'cil', 'CiPaw.01G269800' => 'cil', 'CiPaw.02G168400' => 'cil', 'CiPaw.05G119500' => 'cil', 'CiPaw.11G147300' => 'cil', 'ClCG01G003630' => 'cla', 'ClCG05G000510' => 'cla', 'ClCG05G002300' => 'cla', 'ClCG08G007650' => 'cla', 'ClCG10G021250' => 'cla', 'COL.COLO4_06218' => 'col', 'COL.COLO4_12538' => 'col', 'COL.COLO4_14775' => 'col', 'COL.COLO4_23875' => 'col', 'Cpa.g.sc141.16' => 'cpa', 'Cpa.g.sc169.16' => 'cpa', 'Cpa.g.sc244.4' => 'cpa', 'Cpa.g.sc244.5' => 'cpa', 'Cpa.g.sc29.87' => 'cpa', 'Cpa.g.sc53.115' => 'cpa', 'Cre03.g207502' => 'cre', 'Cre06.g277000' => 'cre', 'Cre09.g394050' => 'cre', 'CsaV3_3G007680' => 'csa', 'CsaV3_3G009710' => 'csa', 'CsaV3_3G034790' => 'csa', 'CsaV3_5G003750' => 'csa', 'CsaV3_6G036620' => 'csa', 'CSS0002288' => 'camsi', 'CSS0011250' => 'camsi', 'CSS0021619' => 'camsi', 'CSS0046701' => 'camsi', 'DCAR_006420' => 'dca', 'DCAR_006865' => 'dca', 'DCAR_008558' => 'dca', 'DCAR_028754' => 'dca', 'DCAR_028755' => 'dca', 'Dinv31218' => 'din', 'Dinv32371' => 'din', 'Dinv34250' => 'din', 'Dinv37156' => 'din', 'Dinv43704' => 'din', 'Duzib093G1811' => 'dzi', 'Duzib106G1622' => 'dzi', 'Duzib114G0504' => 'dzi', 'Duzib128G0338' => 'dzi', 'Duzib128G1577' => 'dzi', 'Duzib133G0104' => 'dzi', 'Duzib133G1080' => 'dzi', 'Duzib138G0324' => 'dzi', 'Duzib138G0394' => 'dzi', 'Duzib205G0122' => 'dzi', 'Duzib268G1020' => 'dzi', 'Duzib268G1359' => 'dzi', 'ECA232G3929' => 'eca', 'ECA236G2210' => 'eca', 'ECA236G2287' => 'eca', 'ECA240G4568' => 'eca', 'ECA247G0894' => 'eca', 'EL10Ac1g00200' => 'bvu', 'EL10Ac1g00886' => 'bvu', 'EL10As1g23091' => 'bvu', 'EL10As1g23092' => 'bvu', 'Eucgr.A01284' => 'egr', 'Eucgr.A01285' => 'egr', 'Eucgr.D02456' => 'egr', 'Eucgr.E00018' => 'egr', 'Eucgr.E01439' => 'egr', 'Eucgr.G02859' => 'egr', 'FAN01G0168' => 'fan', 'FAN01G0453' => 'fan', 'FAN01G2761' => 'fan', 'FAN02G1239' => 'fan', 'FAN03G0645' => 'fan', 'FAN03G2707' => 'fan', 'FAN03G2978' => 'fan', 'FAN04G0227' => 'fan', 'FAN06G0091' => 'fan', 'FAN06G1418' => 'fan', 'FAN06G1512' => 'fan', 'FAN06G1986' => 'fan', 'FAN06G2905' => 'fan', 'FAN06G4325' => 'fan', 'FAN08G0033' => 'fan', 'FAN09G0642' => 'fan', 'FAN10G1763' => 'fan', 'FAN10G2026' => 'fan', 'FAN10G2513' => 'fan', 'FAN10G3402' => 'fan', 'FAN10G3564' => 'fan', 'FAN10G3987' => 'fan', 'FAN13G1490' => 'fan', 'FAN14G5857' => 'fan', 'FAN18G1188' => 'fan', 'FvH4_5g00750' => 'fve', 'FvH4_6g13410' => 'fve', 'FvH4_7g11740' => 'fve', 'FvH4_7g17410' => 'fve', 'FvH4_7g18860' => 'fve', 'Glyma.01G099100' => 'gma', 'Glyma.01G142300' => 'gma', 'Glyma.03G025500' => 'gma', 'Glyma.03G069700' => 'gma', 'Glyma.03G260000' => 'gma', 'Glyma.09G269800' => 'gma', 'Glyma.10G208700' => 'gma', 'Glyma.18G220400' => 'gma', 'Glyma.20G182000' => 'gma', 'Gohir.A01G221726' => 'ghi', 'Gohir.A07G134600' => 'ghi', 'Gohir.A07G146000' => 'ghi', 'Gohir.A08G173900' => 'ghi', 'Gohir.A09G194900' => 'ghi', 'Gohir.A10G204100' => 'ghi', 'Gohir.A11G080600' => 'ghi', 'Gohir.A11G327500' => 'ghi', 'Gohir.A12G101800' => 'ghi', 'Gohir.D01G211200' => 'ghi', 'Gohir.D07G139200' => 'ghi', 'Gohir.D07G152100' => 'ghi', 'Gohir.D08G192600' => 'ghi', 'Gohir.D09G189200' => 'ghi', 'Gohir.D10G212000' => 'ghi', 'Gohir.D11G085200' => 'ghi', 'Gohir.D11G346400' => 'ghi', 'Gohir.D12G104800' => 'ghi', 'Gorai.001G151300' => 'gra', 'Gorai.001G174100' => 'gra', 'Gorai.002G257000' => 'gra', 'Gorai.004G202600' => 'gra', 'Gorai.007G090900' => 'gra', 'Gorai.007G376700' => 'gra', 'Gorai.008G114100' => 'gra', 'Gorai.011G237900' => 'gra', 'GSVIVG01005450001' => 'vvi', 'GSVIVG01016232001' => 'vvi', 'GSVIVG01026157001' => 'vvi', 'GSVIVG01027419001' => 'vvi', 'GSVIVG01027631001' => 'vvi', 'GSVIVG01034143001' => 'vvi', 'HanXRQChr03g0093921' => 'han', 'HanXRQChr04g0120001' => 'han', 'HanXRQChr04g0122561' => 'han', 'HanXRQChr09g0246851' => 'han', 'HanXRQChr10g0293311' => 'han', 'HanXRQChr13g0425231' => 'han', 'HanXRQChr16g0532571' => 'han', 'Haze_09050' => 'cav', 'Haze_15715' => 'cav', 'Haze_15716' => 'cav', 'Haze_16803' => 'cav', 'Haze_16850' => 'cav', 'Hma1.2p1_0301F.1_g118655' => 'hma', 'Hma1.2p1_0309F.1_g120590' => 'hma', 'Hma1.2p1_0936F.1_g238900' => 'hma', 'Hma1.2p1_3552F.1_g336740' => 'hma', 'HPP92_003520' => 'vpl', 'HPP92_006628' => 'vpl', 'HPP92_006645' => 'vpl', 'HPP92_014669' => 'vpl', 'HPP92_015077' => 'vpl', 'Hund16742' => 'sun', 'Hund17022' => 'sun', 'Lalb_Chr02g0152131' => 'lal', 'Lalb_Chr05g0225371' => 'lal', 'Lalb_Chr07g0189841' => 'lal', 'Lalb_Chr07g0192961' => 'lal', 'Lalb_Chr12g0208221' => 'lal', 'Lalb_Chr13g0291211' => 'lal', 'Lalb_Chr13g0291781' => 'lal', 'Lalb_Chr18g0044651' => 'lal', 'Lalb_Chr21g0313731' => 'lal', 'Lj1g0022533' => 'lja', 'Lj2A18T50' => 'lonja', 'Lj2A92G93' => 'lonja', 'Lj3A965T73' => 'lonja', 'Lj3g0000673' => 'lja', 'Lj3g0002666' => 'lja', 'Lj4g0016985' => 'lja', 'Lj5g0003625' => 'lja', 'Lj7A529G36' => 'lonja', 'Lj9A569T49' => 'lonja', 'Lj9A604T63' => 'lonja', 'Lsat_1_v5_gn_3_132060' => 'lsa', 'Lsat_1_v5_gn_4_68941' => 'lsa', 'Lsat_1_v5_gn_5_95580' => 'lsa', 'Lsat_1_v5_gn_7_161' => 'lsa', 'Lsat_1_v5_gn_7_7041' => 'lsa', 'Lsat_1_v5_gn_9_33481' => 'lsa', 'Lsat_1_v5_gn_9_68260' => 'lsa', 'Manes.01G073100' => 'mes', 'Manes.01G266300' => 'mes', 'Manes.02G033300' => 'mes', 'Manes.05G017900' => 'mes', 'Manes.05G046100' => 'mes', 'Manes.08G080900' => 'mes', 'Manes.10G049400' => 'mes', 'Mapoly0009s0186' => 'mpo', 'Mapoly0036s0118' => 'mpo', 'Mapoly0101s0046' => 'mpo', 'MBI04_g30218_MAGBIO' => 'mbi', 'MBI04_g35564_MAGBIO' => 'mbi', 'MBI12_g34011_MAGBIO' => 'mbi', 'MBI14_g04655_MAGBIO' => 'mbi', 'MCO07G653' => 'mco', 'MCO10G173' => 'mco', 'MD01G1087100' => 'mdo', 'MD01G1104200' => 'mdo', 'MD02G1205100' => 'mdo', 'MD04G1079200' => 'mdo', 'MD04G1131400' => 'mdo', 'MD07G1121600' => 'mdo', 'MD07G1157300' => 'mdo', 'MD07G1171000' => 'mdo', 'MD12G1144500' => 'mdo', 'Medtr1g094610' => 'mtr', 'Medtr4g021795' => 'mtr', 'Medtr4g023760' => 'mtr', 'Medtr7g118050' => 'mtr', 'MELO3C005582.2' => 'cme', 'MELO3C005989.2' => 'cme', 'MELO3C006192.2' => 'cme', 'MELO3C009248.2' => 'cme', 'MELO3C019817.2' => 'cme', 'Migut.B01625' => 'egut', 'Migut.B01915' => 'egut', 'Migut.F01721' => 'egut', 'Migut.J00314' => 'egut', 'MSTRG.20742' => 'ama', 'MSTRG.8134' => 'ama', 'Nitab4.5_0000096g0010' => 'nta', 'Nitab4.5_0000202g0030' => 'nta', 'Nitab4.5_0000216g0370' => 'nta', 'Nitab4.5_0000457g0230' => 'nta', 'Nitab4.5_0001702g0170' => 'nta', 'Nitab4.5_0003607g0010' => 'nta', 'Nitab4.5_0004917g0020' => 'nta', 'Nitab4.5_0007059g0010' => 'nta', 'Nitab4.5_0007184g0010' => 'nta', 'Nitab4.5_0007346g0020' => 'nta', 'Nn1g00410' => 'nnu', 'Nn1g01252' => 'nnu', 'Nn2g11168' => 'nnu', 'Nn2g13403' => 'nnu', 'Nn2g13760' => 'nnu', 'Nn4g26380' => 'nnu', 'Oeu000806.2' => 'oeu', 'Oeu005788.1' => 'oeu', 'Oeu006900.3' => 'oeu', 'Oeu007797.1' => 'oeu', 'Oeu011932.1' => 'oeu', 'Oeu022739.1' => 'oeu', 'Oeu037918.1' => 'oeu', 'Oeu055490.2' => 'oeu', 'Os01g0844400' => 'osa', 'Os02g0819100' => 'osa', 'Os03g0804300' => 'osa', 'Os05g0458000' => 'osa', 'Os07g0467800' => 'osa', 'Os12g0602200' => 'osa', 'Peaxi162Scf00013g03444' => 'pax', 'Peaxi162Scf00094g01120' => 'pax', 'Peaxi162Scf00191g01211' => 'pax', 'Peaxi162Scf00238g01110' => 'pax', 'Peaxi162Scf00330g00719' => 'pax', 'Peaxi162Scf00627g00018' => 'pax', 'PGR031G2686' => 'pgr', 'PGR042G0809' => 'pgr', 'PGR142G0193' => 'pgr', 'PGSC0003DMG400011066' => 'stu', 'PGSC0003DMG400012041' => 'stu', 'PGSC0003DMG400013678' => 'stu', 'PGSC0003DMG400023477' => 'stu', 'PGSC0003DMG400025956' => 'stu', 'PGSC0003DMG401019151' => 'stu', 'Phvul.006G116400' => 'pvu', 'Phvul.007G097300' => 'pvu', 'Phvul.010G015000' => 'pvu', 'Phvul.010G083900' => 'pvu', 'Potri.001G117100' => 'ptr', 'Potri.002G147300' => 'ptr', 'Potri.003G115600' => 'ptr', 'Potri.006G087400' => 'ptr', 'Potri.010G226100' => 'ptr', 'Potri.014G069200' => 'ptr', 'Potri.014G104000' => 'ptr', 'Potri.016G100200' => 'ptr', 'Pp3c10_20450' => 'ppa', 'Pp3c1_42400' => 'ppa', 'Pp3c3_24390' => 'ppa', 'Pp3c3_2860' => 'ppa', 'PRCOL_00003193' => 'pco', 'Prupe.2G144500' => 'ppe', 'Prupe.2G195700' => 'ppe', 'Prupe.2G209800' => 'ppe', 'Prupe.5G080000' => 'ppe', 'Prupe.6G257900' => 'ppe', 'Psat3g001160' => 'psa', 'Psat6g181880' => 'psa', 'Psat7g233720' => 'psa', 'PSO063G7587' => 'pso', 'PSO339G2145' => 'pso', 'PSO339G3369' => 'pso', 'PSO478G2747' => 'pso', 'PSO513G0140' => 'pso', 'PSO782G1614' => 'pso', 'PSO782G4889' => 'pso', 'PSO782G5485' => 'pso', 'PSO801G0241' => 'pso', 'QL07p048854' => 'qlo', 'QL08p046745' => 'qlo', 'QL08p052606' => 'qlo', 'QL08p053414' => 'qlo', 'QL08p054868' => 'qlo', 'RcHm_v2.0_Chr1g0350251' => 'rch', 'RcHm_v2.0_Chr1g0360851' => 'rch', 'RcHm_v2.0_Chr1g0362791' => 'rch', 'RcHm_v2.0_Chr3g0466281' => 'rch', 'RcHm_v2.0_Chr7g0201481' => 'rch', 'Rhsim01G0148600' => 'rsi', 'Rhsim05G0194400' => 'rsi', 'Rhsim07G0000700' => 'rsi', 'Rhsim07G0000800' => 'rsi', 'Rhsim07G0027900' => 'rsi', 'Rhsim09G0149500' => 'rsi', 'RhsimUnG0186900' => 'rsi', 'Sabra01G0089900' => 'sbr', 'Sabra02G0114700' => 'sbr', 'Sabra02G0116300' => 'sbr', 'Sabra03G0080100' => 'sbr', 'Sabra08G0024300' => 'sbr', 'Sabra10G0174300' => 'sbr', 'Sabra14G0048900' => 'sbr', 'Sabra14G0076500' => 'sbr', 'SalBow5G2513' => 'sbo', 'Sc01g0002300' => 'sci', 'Sc01g0004450' => 'sci', 'Sc06g0001680' => 'sci', 'Sc23g0003580' => 'sci', 'Sed0000913' => 'sed', 'Sed0001655' => 'sed', 'Sed0007745' => 'sed', 'Sed0010951' => 'sed', 'Sed0017599' => 'sed', 'Sed0021405' => 'sed', 'Sed0022810' => 'sed', 'SEGI_07099' => 'sgi', 'SEGI_11931' => 'sgi', 'SEGI_13187' => 'sgi', 'SEGI_29958' => 'sgi', 'SEGI_36351' => 'sgi', 'SGA_v2.0_scaffold126G33770' => 'sas', 'SGA_v2.0_scaffold153G37003' => 'sas', 'SGA_v2.0_scaffold2G01359' => 'sas', 'SGA_v2.0_scaffold5G03064' => 'sas', 'SGA_v2.0_scaffold95G28903' => 'sas', 'SHI12701' => 'shi', 'SHI26410' => 'shi', 'SHI38997' => 'shi', 'SHI53759' => 'shi', 'SHI53886' => 'shi', 'SHI54714' => 'shi', 'SMO011G0041' => 'smo', 'SMO146G0251' => 'smo', 'SMO160G0004' => 'smo', 'SMO174G0057' => 'smo', 'SMO244G0089' => 'smo', 'SMO296G0011' => 'smo', 'Solyc01g091280.3' => 'sly', 'Solyc05g047610.3' => 'sly', 'Solyc05g047640.3' => 'sly', 'Solyc05g055630.3' => 'sly', 'Solyc10g018160.2' => 'sly', 'Solyc10g084820.2' => 'sly', 'Solyc10g086565.2' => 'sly', 'Sopen01g037030' => 'spe', 'Sopen05g027920' => 'spe', 'Sopen05g034070' => 'spe', 'Sopen10g007260' => 'spe', 'Sopen10g034260' => 'spe', 'Sopen10g035950' => 'spe', 'Sp3g07710' => 'spa', 'Sp4g27420' => 'spa', 'Sp5g02450' => 'spa', 'Sp6g01280' => 'spa', 'Sp6g38480' => 'spa', 'Sp7g20780' => 'spa', 'TAR374G1413' => 'tar', 'TAR623G1777' => 'tar', 'TAR629G2370' => 'tar', 'TAR633G1759' => 'tar', 'TAR636G3387' => 'tar', 'THA.LOC104802447' => 'tha', 'THA.LOC104813916' => 'tha', 'THA.LOC104816423' => 'tha', 'THA.LOC104817246' => 'tha', 'THA.LOC104825895' => 'tha', 'Thecc.01G335200' => 'tca', 'Thecc.01G377400' => 'tca', 'Thecc.03G262200' => 'tca', 'Thecc.05G036800' => 'tca', 'Thecc.10G080500' => 'tca', 'Thecc.10G080800' => 'tca', 'Thhalv10001560m.g' => 'esa', 'Thhalv10006120m.g' => 'esa', 'Thhalv10014375m.g' => 'esa', 'Thhalv10021264m.g' => 'esa', 'Thhalv10028856m.g' => 'esa', 'TPR.G1914' => 'tpr', 'TPR.G4757' => 'tpr', 'TPR.G5595' => 'tpr', 'TWI14G0952' => 'twi', 'TWI14G1307' => 'twi', 'TWI38G2143' => 'twi', 'TWI59G0826' => 'twi', 'TWI77G0527' => 'twi', 'TWI81G0150' => 'twi', 'unitig_21.g21018' => 'ugi', 'unitig_26.g9725' => 'ugi', 'unitig_744.g24653' => 'ugi', 'unitig_749.g13778' => 'ugi', 'unitig_899.g15035' => 'ugi', 'vmacro04296' => 'vma', 'vmacro04852' => 'vma', 'vmacro13404' => 'vma', 'vmacro20169' => 'vma', 'vmacro21014' => 'vma', 'VMungo0331G0237' => 'vmu', 'VMungo0331G0706' => 'vmu', 'VMungo0331G1361' => 'vmu', 'VMungo0331G1489' => 'vmu', 'VMungo0540G1037' => 'vmu', 'VMungo0720G2487' => 'vmu', 'VMungo0720G2721' => 'vmu', 'Zm00001eb086860' => 'zma', 'Zm00001eb104760' => 'zma', 'Zm00001eb148220' => 'zma', 'Zm00001eb259030' => 'zma', 'Zm00001eb289590' => 'zma', 'Zm00001eb420150' => 'zma' ), 'gf_id' => 'HOM05D000968', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000968' ), 'data_identifier' => 'HOM05D000968', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000968', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p31690' => 'bna', 'A03p36040' => 'bna', 'A03p53730' => 'bna', 'A04p01410' => 'bna', 'A05p05420' => 'bna', 'A05p39630' => 'bna', 'A05p39640' => 'bna', 'A09p00970' => 'bna', 'A09p53060' => 'bna', 'A10p31890' => 'bna', 'Aa31LG10G15040' => 'aar', 'Aa31LG1G21090' => 'aar', 'Aa31LG1G26900' => 'aar', 'Aa31LG3G1820' => 'aar', 'Aa31LG5G1100' => 'aar', 'Aa31LG6G4740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2265' => 'aag', 'Actinidia07998' => 'ach', 'Actinidia11266' => 'ach', 'Actinidia12682' => 'ach', 'Actinidia26479' => 'ach', 'Actinidia31406' => 'ach', 'Actinidia32437' => 'ach', 'Actinidia38862' => 'ach', 'Ah.05g174230' => 'amhyb', 'Ah.05g179070' => 'amhyb', 'Ah.05g179090' => 'amhyb', 'Ah.12g059950' => 'amhyb', 'AL3G20480' => 'aly', 'AL4G44520' => 'aly', 'AL5G43110' => 'aly', 'AL6G13890' => 'aly', 'AL6G52620' => 'aly', 'AL7G30830' => 'aly', 'Aqoxy1G00899' => 'aox', 'Aqoxy5G04333' => 'aox', 'Aqoxy7G00641' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3IZ0NN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4EF6AW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W9P8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79GA3M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C43NQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFCU6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G95YVJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCHK29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LU1UG8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX91RN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGB4B1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8DA0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9H7JI' => 'arhy', 'AT3G09320' => 'ath', 'AT3G60800' => 'ath', 'AT4G00840' => 'ath', 'AT4G22750' => 'ath', 'AT5G04270' => 'ath', 'ATR0090G003' => 'atr', 'ATR0559G349' => 'atr', 'ATR0680G261' => 'atr', 'ATR0810G048' => 'atr', 'Atru.chr12.831' => 'acertr', 'Atru.chr5.303' => 'acertr', 'Atru.chr5.748' => 'acertr', 'Atru.chr8.1999' => 'acertr', 'Atru.chr9.1436' => 'acertr', 'AUR62004211' => 'cqu', 'AUR62004548' => 'cqu', 'AUR62013637' => 'cqu', 'AUR62022662' => 'cqu', 'AUR62025777' => 'cqu', 'AUR62042386' => 'cqu', 'BcaB01g02310' => 'bca', 'BcaB01g06062' => 'bca', 'BcaB02g08975' => 'bca', 'BcaB02g08980' => 'bca', 'BcaC01g04228' => 'bca', 'BcaC01g06830' => 'bca', 'BcaC02g10186' => 'bca', 'BcaC02g12214' => 'bca', 'BcaC04g24101' => 'bca', 'BcaC05g29520' => 'bca', 'BcaC05g29661' => 'bca', 'BcaC06g32130' => 'bca', 'BcaC06g32131' => 'bca', 'BcaC07g40601' => 'bca', 'BcaC07g42641' => 'bca', 'BcaNung01038' => 'bca', 'BcaNung01676' => 'bca', 'BcaNung02480' => 'bca', 'BcaNung07376' => 'bca', 'BolC3t16146H' => 'bol', 'BolC3t16637H' => 'bol', 'BolC4t22257H' => 'bol', 'BolC4t24728H' => 'bol', 'BolC5t34517H' => 'bol', 'BolC7t45703H' => 'bol', 'BolC8t51166H' => 'bol', 'BolC9t53038H' => 'bol', 'BolC9t60000H' => 'bol', 'BraA01t01345Z' => 'bra', 'BraA01t01346Z' => 'bra', 'BraA01t01348Z' => 'bra', 'BraA03t12347Z' => 'bra', 'BraA03t12775Z' => 'bra', 'BraA03t14439Z' => 'bra', 'BraA04t15860Z' => 'bra', 'BraA05t19511Z' => 'bra', 'BraA05t22746Z' => 'bra', 'BraA09t35767Z' => 'bra', 'BraA09t40732Z' => 'bra', 'BraA10t45233Z' => 'bra', 'C03p38720' => 'bna', 'C03p43680' => 'bna', 'C04p06350' => 'bna', 'C04p31800' => 'bna', 'C05p58680' => 'bna', 'C07p52110' => 'bna', 'C08p35760' => 'bna', 'C09p01050' => 'bna', 'C09p72600' => 'bna', 'CAN.G106.2' => 'can', 'CAN.G1482.1' => 'can', 'CAN.G324.12' => 'can', 'CAN.G388.20' => 'can', 'CAN.G412.7' => 'can', 'CAN.G694.32' => 'can', 'CAN.G92.12' => 'can', 'CANSAT11G2353' => 'cansat', 'CANSAT21G1398' => 'cansat', 'CANSAT56G2456' => 'cansat', 'CANSAT56G3031' => 'cansat', 'CANSAT56G4539' => 'cansat', 'CARHR083680' => 'chi', 'CARHR171190' => 'chi', 'CARHR209010' => 'chi', 'CARHR229680' => 'chi', 'CARHR249490' => 'chi', 'Carub.0003s0844' => 'cru', 'Carub.0005s2755' => 'cru', 'Carub.0006s0322' => 'cru', 'Carub.0006s3586' => 'cru', 'Carub.0007s1855' => 'cru', 'Ca_07808_v3' => 'car', 'Ca_09535_v3' => 'car', 'Ca_10548_v3' => 'car', 'Ca_19913_v3' => 'car', 'Ca_19916_v3' => 'car', 'Ca_19975_v3' => 'car', 'CBR_g22876' => 'cbr', 'CBR_g22879' => 'cbr', 'CBR_g38491' => 'cbr', 'CBR_g54185' => 'cbr', 'CBR_g54190' => 'cbr', 'Cc02_g11020' => 'ccan', 'Cc02_g23920' => 'ccan', 'Cc02_g39860' => 'ccan', 'Cc02_g39870' => 'ccan', 'Cc03_g06760' => 'ccan', 'Cc06_g02450' => 'ccan', 'Cc09_g09450' => 'ccan', 'CDE02G1959' => 'cde', 'CDE04G0600' => 'cde', 'CDE07G1996' => 'cde', 'CDE07G2078' => 'cde', 'CDE11G0611' => 'cde', 'Cfa001683' => 'cfa', 'Cfa001734' => 'cfa', 'Cfa001737' => 'cfa', 'Cfa003751' => 'cfa', 'Cfa012019' => 'cfa', 'Cfa017353' => 'cfa', 'Cfa017732' => 'cfa', 'Cfa022464' => 'cfa', 'Ciclev10012400m.g' => 'ccl', 'Ciclev10021242m.g' => 'ccl', 'Ciclev10021302m.g' => 'ccl', 'Ciclev10021463m.g' => 'ccl', 'Ciclev10032359m.g' => 'ccl', 'CiPaw.01G081000' => 'cil', 'CiPaw.01G262500' => 'cil', 'CiPaw.01G269800' => 'cil', 'CiPaw.02G168400' => 'cil', 'CiPaw.05G119500' => 'cil', 'CiPaw.11G147300' => 'cil', 'ClCG01G003630' => 'cla', 'ClCG05G000510' => 'cla', 'ClCG05G002300' => 'cla', 'ClCG08G007650' => 'cla', 'ClCG10G021250' => 'cla', 'COL.COLO4_06218' => 'col', 'COL.COLO4_12538' => 'col', 'COL.COLO4_14775' => 'col', 'COL.COLO4_23875' => 'col', 'Cpa.g.sc141.16' => 'cpa', 'Cpa.g.sc169.16' => 'cpa', 'Cpa.g.sc244.4' => 'cpa', 'Cpa.g.sc244.5' => 'cpa', 'Cpa.g.sc29.87' => 'cpa', 'Cpa.g.sc53.115' => 'cpa', 'Cre03.g207502' => 'cre', 'Cre06.g277000' => 'cre', 'Cre09.g394050' => 'cre', 'CsaV3_3G007680' => 'csa', 'CsaV3_3G009710' => 'csa', 'CsaV3_3G034790' => 'csa', 'CsaV3_5G003750' => 'csa', 'CsaV3_6G036620' => 'csa', 'CSS0002288' => 'camsi', 'CSS0011250' => 'camsi', 'CSS0021619' => 'camsi', 'CSS0046701' => 'camsi', 'DCAR_006420' => 'dca', 'DCAR_006865' => 'dca', 'DCAR_008558' => 'dca', 'DCAR_028754' => 'dca', 'DCAR_028755' => 'dca', 'Dinv31218' => 'din', 'Dinv32371' => 'din', 'Dinv34250' => 'din', 'Dinv37156' => 'din', 'Dinv43704' => 'din', 'Duzib093G1811' => 'dzi', 'Duzib106G1622' => 'dzi', 'Duzib114G0504' => 'dzi', 'Duzib128G0338' => 'dzi', 'Duzib128G1577' => 'dzi', 'Duzib133G0104' => 'dzi', 'Duzib133G1080' => 'dzi', 'Duzib138G0324' => 'dzi', 'Duzib138G0394' => 'dzi', 'Duzib205G0122' => 'dzi', 'Duzib268G1020' => 'dzi', 'Duzib268G1359' => 'dzi', 'ECA232G3929' => 'eca', 'ECA236G2210' => 'eca', 'ECA236G2287' => 'eca', 'ECA240G4568' => 'eca', 'ECA247G0894' => 'eca', 'EL10Ac1g00200' => 'bvu', 'EL10Ac1g00886' => 'bvu', 'EL10As1g23091' => 'bvu', 'EL10As1g23092' => 'bvu', 'Eucgr.A01284' => 'egr', 'Eucgr.A01285' => 'egr', 'Eucgr.D02456' => 'egr', 'Eucgr.E00018' => 'egr', 'Eucgr.E01439' => 'egr', 'Eucgr.G02859' => 'egr', 'FAN01G0168' => 'fan', 'FAN01G0453' => 'fan', 'FAN01G2761' => 'fan', 'FAN02G1239' => 'fan', 'FAN03G0645' => 'fan', 'FAN03G2707' => 'fan', 'FAN03G2978' => 'fan', 'FAN04G0227' => 'fan', 'FAN06G0091' => 'fan', 'FAN06G1418' => 'fan', 'FAN06G1512' => 'fan', 'FAN06G1986' => 'fan', 'FAN06G2905' => 'fan', 'FAN06G4325' => 'fan', 'FAN08G0033' => 'fan', 'FAN09G0642' => 'fan', 'FAN10G1763' => 'fan', 'FAN10G2026' => 'fan', 'FAN10G2513' => 'fan', 'FAN10G3402' => 'fan', 'FAN10G3564' => 'fan', 'FAN10G3987' => 'fan', 'FAN13G1490' => 'fan', 'FAN14G5857' => 'fan', 'FAN18G1188' => 'fan', 'FvH4_5g00750' => 'fve', 'FvH4_6g13410' => 'fve', 'FvH4_7g11740' => 'fve', 'FvH4_7g17410' => 'fve', 'FvH4_7g18860' => 'fve', 'Glyma.01G099100' => 'gma', 'Glyma.01G142300' => 'gma', 'Glyma.03G025500' => 'gma', 'Glyma.03G069700' => 'gma', 'Glyma.03G260000' => 'gma', 'Glyma.09G269800' => 'gma', 'Glyma.10G208700' => 'gma', 'Glyma.18G220400' => 'gma', 'Glyma.20G182000' => 'gma', 'Gohir.A01G221726' => 'ghi', 'Gohir.A07G134600' => 'ghi', 'Gohir.A07G146000' => 'ghi', 'Gohir.A08G173900' => 'ghi', 'Gohir.A09G194900' => 'ghi', 'Gohir.A10G204100' => 'ghi', 'Gohir.A11G080600' => 'ghi', 'Gohir.A11G327500' => 'ghi', 'Gohir.A12G101800' => 'ghi', 'Gohir.D01G211200' => 'ghi', 'Gohir.D07G139200' => 'ghi', 'Gohir.D07G152100' => 'ghi', 'Gohir.D08G192600' => 'ghi', 'Gohir.D09G189200' => 'ghi', 'Gohir.D10G212000' => 'ghi', 'Gohir.D11G085200' => 'ghi', 'Gohir.D11G346400' => 'ghi', 'Gohir.D12G104800' => 'ghi', 'Gorai.001G151300' => 'gra', 'Gorai.001G174100' => 'gra', 'Gorai.002G257000' => 'gra', 'Gorai.004G202600' => 'gra', 'Gorai.007G090900' => 'gra', 'Gorai.007G376700' => 'gra', 'Gorai.008G114100' => 'gra', 'Gorai.011G237900' => 'gra', 'GSVIVG01005450001' => 'vvi', 'GSVIVG01016232001' => 'vvi', 'GSVIVG01026157001' => 'vvi', 'GSVIVG01027419001' => 'vvi', 'GSVIVG01027631001' => 'vvi', 'GSVIVG01034143001' => 'vvi', 'HanXRQChr03g0093921' => 'han', 'HanXRQChr04g0120001' => 'han', 'HanXRQChr04g0122561' => 'han', 'HanXRQChr09g0246851' => 'han', 'HanXRQChr10g0293311' => 'han', 'HanXRQChr13g0425231' => 'han', 'HanXRQChr16g0532571' => 'han', 'Haze_09050' => 'cav', 'Haze_15715' => 'cav', 'Haze_15716' => 'cav', 'Haze_16803' => 'cav', 'Haze_16850' => 'cav', 'Hma1.2p1_0301F.1_g118655' => 'hma', 'Hma1.2p1_0309F.1_g120590' => 'hma', 'Hma1.2p1_0936F.1_g238900' => 'hma', 'Hma1.2p1_3552F.1_g336740' => 'hma', 'HPP92_003520' => 'vpl', 'HPP92_006628' => 'vpl', 'HPP92_006645' => 'vpl', 'HPP92_014669' => 'vpl', 'HPP92_015077' => 'vpl', 'Hund16742' => 'sun', 'Hund17022' => 'sun', 'Lalb_Chr02g0152131' => 'lal', 'Lalb_Chr05g0225371' => 'lal', 'Lalb_Chr07g0189841' => 'lal', 'Lalb_Chr07g0192961' => 'lal', 'Lalb_Chr12g0208221' => 'lal', 'Lalb_Chr13g0291211' => 'lal', 'Lalb_Chr13g0291781' => 'lal', 'Lalb_Chr18g0044651' => 'lal', 'Lalb_Chr21g0313731' => 'lal', 'Lj1g0022533' => 'lja', 'Lj2A18T50' => 'lonja', 'Lj2A92G93' => 'lonja', 'Lj3A965T73' => 'lonja', 'Lj3g0000673' => 'lja', 'Lj3g0002666' => 'lja', 'Lj4g0016985' => 'lja', 'Lj5g0003625' => 'lja', 'Lj7A529G36' => 'lonja', 'Lj9A569T49' => 'lonja', 'Lj9A604T63' => 'lonja', 'Lsat_1_v5_gn_3_132060' => 'lsa', 'Lsat_1_v5_gn_4_68941' => 'lsa', 'Lsat_1_v5_gn_5_95580' => 'lsa', 'Lsat_1_v5_gn_7_161' => 'lsa', 'Lsat_1_v5_gn_7_7041' => 'lsa', 'Lsat_1_v5_gn_9_33481' => 'lsa', 'Lsat_1_v5_gn_9_68260' => 'lsa', 'Manes.01G073100' => 'mes', 'Manes.01G266300' => 'mes', 'Manes.02G033300' => 'mes', 'Manes.05G017900' => 'mes', 'Manes.05G046100' => 'mes', 'Manes.08G080900' => 'mes', 'Manes.10G049400' => 'mes', 'Mapoly0009s0186' => 'mpo', 'Mapoly0036s0118' => 'mpo', 'Mapoly0101s0046' => 'mpo', 'MBI04_g30218_MAGBIO' => 'mbi', 'MBI04_g35564_MAGBIO' => 'mbi', 'MBI12_g34011_MAGBIO' => 'mbi', 'MBI14_g04655_MAGBIO' => 'mbi', 'MCO07G653' => 'mco', 'MCO10G173' => 'mco', 'MD01G1087100' => 'mdo', 'MD01G1104200' => 'mdo', 'MD02G1205100' => 'mdo', 'MD04G1079200' => 'mdo', 'MD04G1131400' => 'mdo', 'MD07G1121600' => 'mdo', 'MD07G1157300' => 'mdo', 'MD07G1171000' => 'mdo', 'MD12G1144500' => 'mdo', 'Medtr1g094610' => 'mtr', 'Medtr4g021795' => 'mtr', 'Medtr4g023760' => 'mtr', 'Medtr7g118050' => 'mtr', 'MELO3C005582.2' => 'cme', 'MELO3C005989.2' => 'cme', 'MELO3C006192.2' => 'cme', 'MELO3C009248.2' => 'cme', 'MELO3C019817.2' => 'cme', 'Migut.B01625' => 'egut', 'Migut.B01915' => 'egut', 'Migut.F01721' => 'egut', 'Migut.J00314' => 'egut', 'MSTRG.20742' => 'ama', 'MSTRG.8134' => 'ama', 'Nitab4.5_0000096g0010' => 'nta', 'Nitab4.5_0000202g0030' => 'nta', 'Nitab4.5_0000216g0370' => 'nta', 'Nitab4.5_0000457g0230' => 'nta', 'Nitab4.5_0001702g0170' => 'nta', 'Nitab4.5_0003607g0010' => 'nta', 'Nitab4.5_0004917g0020' => 'nta', 'Nitab4.5_0007059g0010' => 'nta', 'Nitab4.5_0007184g0010' => 'nta', 'Nitab4.5_0007346g0020' => 'nta', 'Nn1g00410' => 'nnu', 'Nn1g01252' => 'nnu', 'Nn2g11168' => 'nnu', 'Nn2g13403' => 'nnu', 'Nn2g13760' => 'nnu', 'Nn4g26380' => 'nnu', 'Oeu000806.2' => 'oeu', 'Oeu005788.1' => 'oeu', 'Oeu006900.3' => 'oeu', 'Oeu007797.1' => 'oeu', 'Oeu011932.1' => 'oeu', 'Oeu022739.1' => 'oeu', 'Oeu037918.1' => 'oeu', 'Oeu055490.2' => 'oeu', 'Os01g0844400' => 'osa', 'Os02g0819100' => 'osa', 'Os03g0804300' => 'osa', 'Os05g0458000' => 'osa', 'Os07g0467800' => 'osa', 'Os12g0602200' => 'osa', 'Peaxi162Scf00013g03444' => 'pax', 'Peaxi162Scf00094g01120' => 'pax', 'Peaxi162Scf00191g01211' => 'pax', 'Peaxi162Scf00238g01110' => 'pax', 'Peaxi162Scf00330g00719' => 'pax', 'Peaxi162Scf00627g00018' => 'pax', 'PGR031G2686' => 'pgr', 'PGR042G0809' => 'pgr', 'PGR142G0193' => 'pgr', 'PGSC0003DMG400011066' => 'stu', 'PGSC0003DMG400012041' => 'stu', 'PGSC0003DMG400013678' => 'stu', 'PGSC0003DMG400023477' => 'stu', 'PGSC0003DMG400025956' => 'stu', 'PGSC0003DMG401019151' => 'stu', 'Phvul.006G116400' => 'pvu', 'Phvul.007G097300' => 'pvu', 'Phvul.010G015000' => 'pvu', 'Phvul.010G083900' => 'pvu', 'Potri.001G117100' => 'ptr', 'Potri.002G147300' => 'ptr', 'Potri.003G115600' => 'ptr', 'Potri.006G087400' => 'ptr', 'Potri.010G226100' => 'ptr', 'Potri.014G069200' => 'ptr', 'Potri.014G104000' => 'ptr', 'Potri.016G100200' => 'ptr', 'Pp3c10_20450' => 'ppa', 'Pp3c1_42400' => 'ppa', 'Pp3c3_24390' => 'ppa', 'Pp3c3_2860' => 'ppa', 'PRCOL_00003193' => 'pco', 'Prupe.2G144500' => 'ppe', 'Prupe.2G195700' => 'ppe', 'Prupe.2G209800' => 'ppe', 'Prupe.5G080000' => 'ppe', 'Prupe.6G257900' => 'ppe', 'Psat3g001160' => 'psa', 'Psat6g181880' => 'psa', 'Psat7g233720' => 'psa', 'PSO063G7587' => 'pso', 'PSO339G2145' => 'pso', 'PSO339G3369' => 'pso', 'PSO478G2747' => 'pso', 'PSO513G0140' => 'pso', 'PSO782G1614' => 'pso', 'PSO782G4889' => 'pso', 'PSO782G5485' => 'pso', 'PSO801G0241' => 'pso', 'QL07p048854' => 'qlo', 'QL08p046745' => 'qlo', 'QL08p052606' => 'qlo', 'QL08p053414' => 'qlo', 'QL08p054868' => 'qlo', 'RcHm_v2.0_Chr1g0350251' => 'rch', 'RcHm_v2.0_Chr1g0360851' => 'rch', 'RcHm_v2.0_Chr1g0362791' => 'rch', 'RcHm_v2.0_Chr3g0466281' => 'rch', 'RcHm_v2.0_Chr7g0201481' => 'rch', 'Rhsim01G0148600' => 'rsi', 'Rhsim05G0194400' => 'rsi', 'Rhsim07G0000700' => 'rsi', 'Rhsim07G0000800' => 'rsi', 'Rhsim07G0027900' => 'rsi', 'Rhsim09G0149500' => 'rsi', 'RhsimUnG0186900' => 'rsi', 'Sabra01G0089900' => 'sbr', 'Sabra02G0114700' => 'sbr', 'Sabra02G0116300' => 'sbr', 'Sabra03G0080100' => 'sbr', 'Sabra08G0024300' => 'sbr', 'Sabra10G0174300' => 'sbr', 'Sabra14G0048900' => 'sbr', 'Sabra14G0076500' => 'sbr', 'SalBow5G2513' => 'sbo', 'Sc01g0002300' => 'sci', 'Sc01g0004450' => 'sci', 'Sc06g0001680' => 'sci', 'Sc23g0003580' => 'sci', 'Sed0000913' => 'sed', 'Sed0001655' => 'sed', 'Sed0007745' => 'sed', 'Sed0010951' => 'sed', 'Sed0017599' => 'sed', 'Sed0021405' => 'sed', 'Sed0022810' => 'sed', 'SEGI_07099' => 'sgi', 'SEGI_11931' => 'sgi', 'SEGI_13187' => 'sgi', 'SEGI_29958' => 'sgi', 'SEGI_36351' => 'sgi', 'SGA_v2.0_scaffold126G33770' => 'sas', 'SGA_v2.0_scaffold153G37003' => 'sas', 'SGA_v2.0_scaffold2G01359' => 'sas', 'SGA_v2.0_scaffold5G03064' => 'sas', 'SGA_v2.0_scaffold95G28903' => 'sas', 'SHI12701' => 'shi', 'SHI26410' => 'shi', 'SHI38997' => 'shi', 'SHI53759' => 'shi', 'SHI53886' => 'shi', 'SHI54714' => 'shi', 'SMO011G0041' => 'smo', 'SMO146G0251' => 'smo', 'SMO160G0004' => 'smo', 'SMO174G0057' => 'smo', 'SMO244G0089' => 'smo', 'SMO296G0011' => 'smo', 'Solyc01g091280.3' => 'sly', 'Solyc05g047610.3' => 'sly', 'Solyc05g047640.3' => 'sly', 'Solyc05g055630.3' => 'sly', 'Solyc10g018160.2' => 'sly', 'Solyc10g084820.2' => 'sly', 'Solyc10g086565.2' => 'sly', 'Sopen01g037030' => 'spe', 'Sopen05g027920' => 'spe', 'Sopen05g034070' => 'spe', 'Sopen10g007260' => 'spe', 'Sopen10g034260' => 'spe', 'Sopen10g035950' => 'spe', 'Sp3g07710' => 'spa', 'Sp4g27420' => 'spa', 'Sp5g02450' => 'spa', 'Sp6g01280' => 'spa', 'Sp6g38480' => 'spa', 'Sp7g20780' => 'spa', 'TAR374G1413' => 'tar', 'TAR623G1777' => 'tar', 'TAR629G2370' => 'tar', 'TAR633G1759' => 'tar', 'TAR636G3387' => 'tar', 'THA.LOC104802447' => 'tha', 'THA.LOC104813916' => 'tha', 'THA.LOC104816423' => 'tha', 'THA.LOC104817246' => 'tha', 'THA.LOC104825895' => 'tha', 'Thecc.01G335200' => 'tca', 'Thecc.01G377400' => 'tca', 'Thecc.03G262200' => 'tca', 'Thecc.05G036800' => 'tca', 'Thecc.10G080500' => 'tca', 'Thecc.10G080800' => 'tca', 'Thhalv10001560m.g' => 'esa', 'Thhalv10006120m.g' => 'esa', 'Thhalv10014375m.g' => 'esa', 'Thhalv10021264m.g' => 'esa', 'Thhalv10028856m.g' => 'esa', 'TPR.G1914' => 'tpr', 'TPR.G4757' => 'tpr', 'TPR.G5595' => 'tpr', 'TWI14G0952' => 'twi', 'TWI14G1307' => 'twi', 'TWI38G2143' => 'twi', 'TWI59G0826' => 'twi', 'TWI77G0527' => 'twi', 'TWI81G0150' => 'twi', 'unitig_21.g21018' => 'ugi', 'unitig_26.g9725' => 'ugi', 'unitig_744.g24653' => 'ugi', 'unitig_749.g13778' => 'ugi', 'unitig_899.g15035' => 'ugi', 'vmacro04296' => 'vma', 'vmacro04852' => 'vma', 'vmacro13404' => 'vma', 'vmacro20169' => 'vma', 'vmacro21014' => 'vma', 'VMungo0331G0237' => 'vmu', 'VMungo0331G0706' => 'vmu', 'VMungo0331G1361' => 'vmu', 'VMungo0331G1489' => 'vmu', 'VMungo0540G1037' => 'vmu', 'VMungo0720G2487' => 'vmu', 'VMungo0720G2721' => 'vmu', 'Zm00001eb086860' => 'zma', 'Zm00001eb104760' => 'zma', 'Zm00001eb148220' => 'zma', 'Zm00001eb259030' => 'zma', 'Zm00001eb289590' => 'zma', 'Zm00001eb420150' => 'zma' ) $gf_id = 'HOM05D000968' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000968' ) $data_identifier = 'HOM05D000968' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 19, 'bol' => (int) 9, 'bra' => (int) 12, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 5, 'ccan' => (int) 7, 'cde' => (int) 5, 'cfa' => (int) 8, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 4, 'dca' => (int) 5, 'din' => (int) 5, 'dzi' => (int) 12, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 25, 'fve' => (int) 5, 'gma' => (int) 9, 'ghi' => (int) 18, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 7, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 5, 'sun' => (int) 2, 'lal' => (int) 9, 'lja' => (int) 5, 'lonja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 9, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 2, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 3, 'stu' => (int) 6, 'pvu' => (int) 4, 'ptr' => (int) 8, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 3, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 1, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 5, 'sas' => (int) 5, 'shi' => (int) 6, 'smo' => (int) 6, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 3, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420150' $species_info = array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ) $local_species = 'bol' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000968', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p31690' => 'bna', 'A03p36040' => 'bna', 'A03p53730' => 'bna', 'A04p01410' => 'bna', 'A05p05420' => 'bna', 'A05p39630' => 'bna', 'A05p39640' => 'bna', 'A09p00970' => 'bna', 'A09p53060' => 'bna', 'A10p31890' => 'bna', 'Aa31LG10G15040' => 'aar', 'Aa31LG1G21090' => 'aar', 'Aa31LG1G26900' => 'aar', 'Aa31LG3G1820' => 'aar', 'Aa31LG5G1100' => 'aar', 'Aa31LG6G4740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2265' => 'aag', 'Actinidia07998' => 'ach', 'Actinidia11266' => 'ach', 'Actinidia12682' => 'ach', 'Actinidia26479' => 'ach', 'Actinidia31406' => 'ach', 'Actinidia32437' => 'ach', 'Actinidia38862' => 'ach', 'Ah.05g174230' => 'amhyb', 'Ah.05g179070' => 'amhyb', 'Ah.05g179090' => 'amhyb', 'Ah.12g059950' => 'amhyb', 'AL3G20480' => 'aly', 'AL4G44520' => 'aly', 'AL5G43110' => 'aly', 'AL6G13890' => 'aly', 'AL6G52620' => 'aly', 'AL7G30830' => 'aly', 'Aqoxy1G00899' => 'aox', 'Aqoxy5G04333' => 'aox', 'Aqoxy7G00641' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3IZ0NN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4EF6AW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W9P8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79GA3M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C43NQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFCU6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G95YVJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCHK29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LU1UG8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX91RN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGB4B1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8DA0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9H7JI' => 'arhy', 'AT3G09320' => 'ath', 'AT3G60800' => 'ath', 'AT4G00840' => 'ath', 'AT4G22750' => 'ath', 'AT5G04270' => 'ath', 'ATR0090G003' => 'atr', 'ATR0559G349' => 'atr', 'ATR0680G261' => 'atr', 'ATR0810G048' => 'atr', 'Atru.chr12.831' => 'acertr', 'Atru.chr5.303' => 'acertr', 'Atru.chr5.748' => 'acertr', 'Atru.chr8.1999' => 'acertr', 'Atru.chr9.1436' => 'acertr', 'AUR62004211' => 'cqu', 'AUR62004548' => 'cqu', 'AUR62013637' => 'cqu', 'AUR62022662' => 'cqu', 'AUR62025777' => 'cqu', 'AUR62042386' => 'cqu', 'BcaB01g02310' => 'bca', 'BcaB01g06062' => 'bca', 'BcaB02g08975' => 'bca', 'BcaB02g08980' => 'bca', 'BcaC01g04228' => 'bca', 'BcaC01g06830' => 'bca', 'BcaC02g10186' => 'bca', 'BcaC02g12214' => 'bca', 'BcaC04g24101' => 'bca', 'BcaC05g29520' => 'bca', 'BcaC05g29661' => 'bca', 'BcaC06g32130' => 'bca', 'BcaC06g32131' => 'bca', 'BcaC07g40601' => 'bca', 'BcaC07g42641' => 'bca', 'BcaNung01038' => 'bca', 'BcaNung01676' => 'bca', 'BcaNung02480' => 'bca', 'BcaNung07376' => 'bca', 'BolC3t16146H' => 'bol', 'BolC3t16637H' => 'bol', 'BolC4t22257H' => 'bol', 'BolC4t24728H' => 'bol', 'BolC5t34517H' => 'bol', 'BolC7t45703H' => 'bol', 'BolC8t51166H' => 'bol', 'BolC9t53038H' => 'bol', 'BolC9t60000H' => 'bol', 'BraA01t01345Z' => 'bra', 'BraA01t01346Z' => 'bra', 'BraA01t01348Z' => 'bra', 'BraA03t12347Z' => 'bra', 'BraA03t12775Z' => 'bra', 'BraA03t14439Z' => 'bra', 'BraA04t15860Z' => 'bra', 'BraA05t19511Z' => 'bra', 'BraA05t22746Z' => 'bra', 'BraA09t35767Z' => 'bra', 'BraA09t40732Z' => 'bra', 'BraA10t45233Z' => 'bra', 'C03p38720' => 'bna', 'C03p43680' => 'bna', 'C04p06350' => 'bna', 'C04p31800' => 'bna', 'C05p58680' => 'bna', 'C07p52110' => 'bna', 'C08p35760' => 'bna', 'C09p01050' => 'bna', 'C09p72600' => 'bna', 'CAN.G106.2' => 'can', 'CAN.G1482.1' => 'can', 'CAN.G324.12' => 'can', 'CAN.G388.20' => 'can', 'CAN.G412.7' => 'can', 'CAN.G694.32' => 'can', 'CAN.G92.12' => 'can', 'CANSAT11G2353' => 'cansat', 'CANSAT21G1398' => 'cansat', 'CANSAT56G2456' => 'cansat', 'CANSAT56G3031' => 'cansat', 'CANSAT56G4539' => 'cansat', 'CARHR083680' => 'chi', 'CARHR171190' => 'chi', 'CARHR209010' => 'chi', 'CARHR229680' => 'chi', 'CARHR249490' => 'chi', 'Carub.0003s0844' => 'cru', 'Carub.0005s2755' => 'cru', 'Carub.0006s0322' => 'cru', 'Carub.0006s3586' => 'cru', 'Carub.0007s1855' => 'cru', 'Ca_07808_v3' => 'car', 'Ca_09535_v3' => 'car', 'Ca_10548_v3' => 'car', 'Ca_19913_v3' => 'car', 'Ca_19916_v3' => 'car', 'Ca_19975_v3' => 'car', 'CBR_g22876' => 'cbr', 'CBR_g22879' => 'cbr', 'CBR_g38491' => 'cbr', 'CBR_g54185' => 'cbr', 'CBR_g54190' => 'cbr', 'Cc02_g11020' => 'ccan', 'Cc02_g23920' => 'ccan', 'Cc02_g39860' => 'ccan', 'Cc02_g39870' => 'ccan', 'Cc03_g06760' => 'ccan', 'Cc06_g02450' => 'ccan', 'Cc09_g09450' => 'ccan', 'CDE02G1959' => 'cde', 'CDE04G0600' => 'cde', 'CDE07G1996' => 'cde', 'CDE07G2078' => 'cde', 'CDE11G0611' => 'cde', 'Cfa001683' => 'cfa', 'Cfa001734' => 'cfa', 'Cfa001737' => 'cfa', 'Cfa003751' => 'cfa', 'Cfa012019' => 'cfa', 'Cfa017353' => 'cfa', 'Cfa017732' => 'cfa', 'Cfa022464' => 'cfa', 'Ciclev10012400m.g' => 'ccl', 'Ciclev10021242m.g' => 'ccl', 'Ciclev10021302m.g' => 'ccl', 'Ciclev10021463m.g' => 'ccl', 'Ciclev10032359m.g' => 'ccl', 'CiPaw.01G081000' => 'cil', 'CiPaw.01G262500' => 'cil', 'CiPaw.01G269800' => 'cil', 'CiPaw.02G168400' => 'cil', 'CiPaw.05G119500' => 'cil', 'CiPaw.11G147300' => 'cil', 'ClCG01G003630' => 'cla', 'ClCG05G000510' => 'cla', 'ClCG05G002300' => 'cla', 'ClCG08G007650' => 'cla', 'ClCG10G021250' => 'cla', 'COL.COLO4_06218' => 'col', 'COL.COLO4_12538' => 'col', 'COL.COLO4_14775' => 'col', 'COL.COLO4_23875' => 'col', 'Cpa.g.sc141.16' => 'cpa', 'Cpa.g.sc169.16' => 'cpa', 'Cpa.g.sc244.4' => 'cpa', 'Cpa.g.sc244.5' => 'cpa', 'Cpa.g.sc29.87' => 'cpa', 'Cpa.g.sc53.115' => 'cpa', 'Cre03.g207502' => 'cre', 'Cre06.g277000' => 'cre', 'Cre09.g394050' => 'cre', 'CsaV3_3G007680' => 'csa', 'CsaV3_3G009710' => 'csa', 'CsaV3_3G034790' => 'csa', 'CsaV3_5G003750' => 'csa', 'CsaV3_6G036620' => 'csa', 'CSS0002288' => 'camsi', 'CSS0011250' => 'camsi', 'CSS0021619' => 'camsi', 'CSS0046701' => 'camsi', 'DCAR_006420' => 'dca', 'DCAR_006865' => 'dca', 'DCAR_008558' => 'dca', 'DCAR_028754' => 'dca', 'DCAR_028755' => 'dca', 'Dinv31218' => 'din', 'Dinv32371' => 'din', 'Dinv34250' => 'din', 'Dinv37156' => 'din', 'Dinv43704' => 'din', 'Duzib093G1811' => 'dzi', 'Duzib106G1622' => 'dzi', 'Duzib114G0504' => 'dzi', 'Duzib128G0338' => 'dzi', 'Duzib128G1577' => 'dzi', 'Duzib133G0104' => 'dzi', 'Duzib133G1080' => 'dzi', 'Duzib138G0324' => 'dzi', 'Duzib138G0394' => 'dzi', 'Duzib205G0122' => 'dzi', 'Duzib268G1020' => 'dzi', 'Duzib268G1359' => 'dzi', 'ECA232G3929' => 'eca', 'ECA236G2210' => 'eca', 'ECA236G2287' => 'eca', 'ECA240G4568' => 'eca', 'ECA247G0894' => 'eca', 'EL10Ac1g00200' => 'bvu', 'EL10Ac1g00886' => 'bvu', 'EL10As1g23091' => 'bvu', 'EL10As1g23092' => 'bvu', 'Eucgr.A01284' => 'egr', 'Eucgr.A01285' => 'egr', 'Eucgr.D02456' => 'egr', 'Eucgr.E00018' => 'egr', 'Eucgr.E01439' => 'egr', 'Eucgr.G02859' => 'egr', 'FAN01G0168' => 'fan', 'FAN01G0453' => 'fan', 'FAN01G2761' => 'fan', 'FAN02G1239' => 'fan', 'FAN03G0645' => 'fan', 'FAN03G2707' => 'fan', 'FAN03G2978' => 'fan', 'FAN04G0227' => 'fan', 'FAN06G0091' => 'fan', 'FAN06G1418' => 'fan', 'FAN06G1512' => 'fan', 'FAN06G1986' => 'fan', 'FAN06G2905' => 'fan', 'FAN06G4325' => 'fan', 'FAN08G0033' => 'fan', 'FAN09G0642' => 'fan', 'FAN10G1763' => 'fan', 'FAN10G2026' => 'fan', 'FAN10G2513' => 'fan', 'FAN10G3402' => 'fan', 'FAN10G3564' => 'fan', 'FAN10G3987' => 'fan', 'FAN13G1490' => 'fan', 'FAN14G5857' => 'fan', 'FAN18G1188' => 'fan', 'FvH4_5g00750' => 'fve', 'FvH4_6g13410' => 'fve', 'FvH4_7g11740' => 'fve', 'FvH4_7g17410' => 'fve', 'FvH4_7g18860' => 'fve', 'Glyma.01G099100' => 'gma', 'Glyma.01G142300' => 'gma', 'Glyma.03G025500' => 'gma', 'Glyma.03G069700' => 'gma', 'Glyma.03G260000' => 'gma', 'Glyma.09G269800' => 'gma', 'Glyma.10G208700' => 'gma', 'Glyma.18G220400' => 'gma', 'Glyma.20G182000' => 'gma', 'Gohir.A01G221726' => 'ghi', 'Gohir.A07G134600' => 'ghi', 'Gohir.A07G146000' => 'ghi', 'Gohir.A08G173900' => 'ghi', 'Gohir.A09G194900' => 'ghi', 'Gohir.A10G204100' => 'ghi', 'Gohir.A11G080600' => 'ghi', 'Gohir.A11G327500' => 'ghi', 'Gohir.A12G101800' => 'ghi', 'Gohir.D01G211200' => 'ghi', 'Gohir.D07G139200' => 'ghi', 'Gohir.D07G152100' => 'ghi', 'Gohir.D08G192600' => 'ghi', 'Gohir.D09G189200' => 'ghi', 'Gohir.D10G212000' => 'ghi', 'Gohir.D11G085200' => 'ghi', 'Gohir.D11G346400' => 'ghi', 'Gohir.D12G104800' => 'ghi', 'Gorai.001G151300' => 'gra', 'Gorai.001G174100' => 'gra', 'Gorai.002G257000' => 'gra', 'Gorai.004G202600' => 'gra', 'Gorai.007G090900' => 'gra', 'Gorai.007G376700' => 'gra', 'Gorai.008G114100' => 'gra', 'Gorai.011G237900' => 'gra', 'GSVIVG01005450001' => 'vvi', 'GSVIVG01016232001' => 'vvi', 'GSVIVG01026157001' => 'vvi', 'GSVIVG01027419001' => 'vvi', 'GSVIVG01027631001' => 'vvi', 'GSVIVG01034143001' => 'vvi', 'HanXRQChr03g0093921' => 'han', 'HanXRQChr04g0120001' => 'han', 'HanXRQChr04g0122561' => 'han', 'HanXRQChr09g0246851' => 'han', 'HanXRQChr10g0293311' => 'han', 'HanXRQChr13g0425231' => 'han', 'HanXRQChr16g0532571' => 'han', 'Haze_09050' => 'cav', 'Haze_15715' => 'cav', 'Haze_15716' => 'cav', 'Haze_16803' => 'cav', 'Haze_16850' => 'cav', 'Hma1.2p1_0301F.1_g118655' => 'hma', 'Hma1.2p1_0309F.1_g120590' => 'hma', 'Hma1.2p1_0936F.1_g238900' => 'hma', 'Hma1.2p1_3552F.1_g336740' => 'hma', 'HPP92_003520' => 'vpl', 'HPP92_006628' => 'vpl', 'HPP92_006645' => 'vpl', 'HPP92_014669' => 'vpl', 'HPP92_015077' => 'vpl', 'Hund16742' => 'sun', 'Hund17022' => 'sun', 'Lalb_Chr02g0152131' => 'lal', 'Lalb_Chr05g0225371' => 'lal', 'Lalb_Chr07g0189841' => 'lal', 'Lalb_Chr07g0192961' => 'lal', 'Lalb_Chr12g0208221' => 'lal', 'Lalb_Chr13g0291211' => 'lal', 'Lalb_Chr13g0291781' => 'lal', 'Lalb_Chr18g0044651' => 'lal', 'Lalb_Chr21g0313731' => 'lal', 'Lj1g0022533' => 'lja', 'Lj2A18T50' => 'lonja', 'Lj2A92G93' => 'lonja', 'Lj3A965T73' => 'lonja', 'Lj3g0000673' => 'lja', 'Lj3g0002666' => 'lja', 'Lj4g0016985' => 'lja', 'Lj5g0003625' => 'lja', 'Lj7A529G36' => 'lonja', 'Lj9A569T49' => 'lonja', 'Lj9A604T63' => 'lonja', 'Lsat_1_v5_gn_3_132060' => 'lsa', 'Lsat_1_v5_gn_4_68941' => 'lsa', 'Lsat_1_v5_gn_5_95580' => 'lsa', 'Lsat_1_v5_gn_7_161' => 'lsa', 'Lsat_1_v5_gn_7_7041' => 'lsa', 'Lsat_1_v5_gn_9_33481' => 'lsa', 'Lsat_1_v5_gn_9_68260' => 'lsa', 'Manes.01G073100' => 'mes', 'Manes.01G266300' => 'mes', 'Manes.02G033300' => 'mes', 'Manes.05G017900' => 'mes', 'Manes.05G046100' => 'mes', 'Manes.08G080900' => 'mes', 'Manes.10G049400' => 'mes', 'Mapoly0009s0186' => 'mpo', 'Mapoly0036s0118' => 'mpo', 'Mapoly0101s0046' => 'mpo', 'MBI04_g30218_MAGBIO' => 'mbi', 'MBI04_g35564_MAGBIO' => 'mbi', 'MBI12_g34011_MAGBIO' => 'mbi', 'MBI14_g04655_MAGBIO' => 'mbi', 'MCO07G653' => 'mco', 'MCO10G173' => 'mco', 'MD01G1087100' => 'mdo', 'MD01G1104200' => 'mdo', 'MD02G1205100' => 'mdo', 'MD04G1079200' => 'mdo', 'MD04G1131400' => 'mdo', 'MD07G1121600' => 'mdo', 'MD07G1157300' => 'mdo', 'MD07G1171000' => 'mdo', 'MD12G1144500' => 'mdo', 'Medtr1g094610' => 'mtr', 'Medtr4g021795' => 'mtr', 'Medtr4g023760' => 'mtr', 'Medtr7g118050' => 'mtr', 'MELO3C005582.2' => 'cme', 'MELO3C005989.2' => 'cme', 'MELO3C006192.2' => 'cme', 'MELO3C009248.2' => 'cme', 'MELO3C019817.2' => 'cme', 'Migut.B01625' => 'egut', 'Migut.B01915' => 'egut', 'Migut.F01721' => 'egut', 'Migut.J00314' => 'egut', 'MSTRG.20742' => 'ama', 'MSTRG.8134' => 'ama', 'Nitab4.5_0000096g0010' => 'nta', 'Nitab4.5_0000202g0030' => 'nta', 'Nitab4.5_0000216g0370' => 'nta', 'Nitab4.5_0000457g0230' => 'nta', 'Nitab4.5_0001702g0170' => 'nta', 'Nitab4.5_0003607g0010' => 'nta', 'Nitab4.5_0004917g0020' => 'nta', 'Nitab4.5_0007059g0010' => 'nta', 'Nitab4.5_0007184g0010' => 'nta', 'Nitab4.5_0007346g0020' => 'nta', 'Nn1g00410' => 'nnu', 'Nn1g01252' => 'nnu', 'Nn2g11168' => 'nnu', 'Nn2g13403' => 'nnu', 'Nn2g13760' => 'nnu', 'Nn4g26380' => 'nnu', 'Oeu000806.2' => 'oeu', 'Oeu005788.1' => 'oeu', 'Oeu006900.3' => 'oeu', 'Oeu007797.1' => 'oeu', 'Oeu011932.1' => 'oeu', 'Oeu022739.1' => 'oeu', 'Oeu037918.1' => 'oeu', 'Oeu055490.2' => 'oeu', 'Os01g0844400' => 'osa', 'Os02g0819100' => 'osa', 'Os03g0804300' => 'osa', 'Os05g0458000' => 'osa', 'Os07g0467800' => 'osa', 'Os12g0602200' => 'osa', 'Peaxi162Scf00013g03444' => 'pax', 'Peaxi162Scf00094g01120' => 'pax', 'Peaxi162Scf00191g01211' => 'pax', 'Peaxi162Scf00238g01110' => 'pax', 'Peaxi162Scf00330g00719' => 'pax', 'Peaxi162Scf00627g00018' => 'pax', 'PGR031G2686' => 'pgr', 'PGR042G0809' => 'pgr', 'PGR142G0193' => 'pgr', 'PGSC0003DMG400011066' => 'stu', 'PGSC0003DMG400012041' => 'stu', 'PGSC0003DMG400013678' => 'stu', 'PGSC0003DMG400023477' => 'stu', 'PGSC0003DMG400025956' => 'stu', 'PGSC0003DMG401019151' => 'stu', 'Phvul.006G116400' => 'pvu', 'Phvul.007G097300' => 'pvu', 'Phvul.010G015000' => 'pvu', 'Phvul.010G083900' => 'pvu', 'Potri.001G117100' => 'ptr', 'Potri.002G147300' => 'ptr', 'Potri.003G115600' => 'ptr', 'Potri.006G087400' => 'ptr', 'Potri.010G226100' => 'ptr', 'Potri.014G069200' => 'ptr', 'Potri.014G104000' => 'ptr', 'Potri.016G100200' => 'ptr', 'Pp3c10_20450' => 'ppa', 'Pp3c1_42400' => 'ppa', 'Pp3c3_24390' => 'ppa', 'Pp3c3_2860' => 'ppa', 'PRCOL_00003193' => 'pco', 'Prupe.2G144500' => 'ppe', 'Prupe.2G195700' => 'ppe', 'Prupe.2G209800' => 'ppe', 'Prupe.5G080000' => 'ppe', 'Prupe.6G257900' => 'ppe', 'Psat3g001160' => 'psa', 'Psat6g181880' => 'psa', 'Psat7g233720' => 'psa', 'PSO063G7587' => 'pso', 'PSO339G2145' => 'pso', 'PSO339G3369' => 'pso', 'PSO478G2747' => 'pso', 'PSO513G0140' => 'pso', 'PSO782G1614' => 'pso', 'PSO782G4889' => 'pso', 'PSO782G5485' => 'pso', 'PSO801G0241' => 'pso', 'QL07p048854' => 'qlo', 'QL08p046745' => 'qlo', 'QL08p052606' => 'qlo', 'QL08p053414' => 'qlo', 'QL08p054868' => 'qlo', 'RcHm_v2.0_Chr1g0350251' => 'rch', 'RcHm_v2.0_Chr1g0360851' => 'rch', 'RcHm_v2.0_Chr1g0362791' => 'rch', 'RcHm_v2.0_Chr3g0466281' => 'rch', 'RcHm_v2.0_Chr7g0201481' => 'rch', 'Rhsim01G0148600' => 'rsi', 'Rhsim05G0194400' => 'rsi', 'Rhsim07G0000700' => 'rsi', 'Rhsim07G0000800' => 'rsi', 'Rhsim07G0027900' => 'rsi', 'Rhsim09G0149500' => 'rsi', 'RhsimUnG0186900' => 'rsi', 'Sabra01G0089900' => 'sbr', 'Sabra02G0114700' => 'sbr', 'Sabra02G0116300' => 'sbr', 'Sabra03G0080100' => 'sbr', 'Sabra08G0024300' => 'sbr', 'Sabra10G0174300' => 'sbr', 'Sabra14G0048900' => 'sbr', 'Sabra14G0076500' => 'sbr', 'SalBow5G2513' => 'sbo', 'Sc01g0002300' => 'sci', 'Sc01g0004450' => 'sci', 'Sc06g0001680' => 'sci', 'Sc23g0003580' => 'sci', 'Sed0000913' => 'sed', 'Sed0001655' => 'sed', 'Sed0007745' => 'sed', 'Sed0010951' => 'sed', 'Sed0017599' => 'sed', 'Sed0021405' => 'sed', 'Sed0022810' => 'sed', 'SEGI_07099' => 'sgi', 'SEGI_11931' => 'sgi', 'SEGI_13187' => 'sgi', 'SEGI_29958' => 'sgi', 'SEGI_36351' => 'sgi', 'SGA_v2.0_scaffold126G33770' => 'sas', 'SGA_v2.0_scaffold153G37003' => 'sas', 'SGA_v2.0_scaffold2G01359' => 'sas', 'SGA_v2.0_scaffold5G03064' => 'sas', 'SGA_v2.0_scaffold95G28903' => 'sas', 'SHI12701' => 'shi', 'SHI26410' => 'shi', 'SHI38997' => 'shi', 'SHI53759' => 'shi', 'SHI53886' => 'shi', 'SHI54714' => 'shi', 'SMO011G0041' => 'smo', 'SMO146G0251' => 'smo', 'SMO160G0004' => 'smo', 'SMO174G0057' => 'smo', 'SMO244G0089' => 'smo', 'SMO296G0011' => 'smo', 'Solyc01g091280.3' => 'sly', 'Solyc05g047610.3' => 'sly', 'Solyc05g047640.3' => 'sly', 'Solyc05g055630.3' => 'sly', 'Solyc10g018160.2' => 'sly', 'Solyc10g084820.2' => 'sly', 'Solyc10g086565.2' => 'sly', 'Sopen01g037030' => 'spe', 'Sopen05g027920' => 'spe', 'Sopen05g034070' => 'spe', 'Sopen10g007260' => 'spe', 'Sopen10g034260' => 'spe', 'Sopen10g035950' => 'spe', 'Sp3g07710' => 'spa', 'Sp4g27420' => 'spa', 'Sp5g02450' => 'spa', 'Sp6g01280' => 'spa', 'Sp6g38480' => 'spa', 'Sp7g20780' => 'spa', 'TAR374G1413' => 'tar', 'TAR623G1777' => 'tar', 'TAR629G2370' => 'tar', 'TAR633G1759' => 'tar', 'TAR636G3387' => 'tar', 'THA.LOC104802447' => 'tha', 'THA.LOC104813916' => 'tha', 'THA.LOC104816423' => 'tha', 'THA.LOC104817246' => 'tha', 'THA.LOC104825895' => 'tha', 'Thecc.01G335200' => 'tca', 'Thecc.01G377400' => 'tca', 'Thecc.03G262200' => 'tca', 'Thecc.05G036800' => 'tca', 'Thecc.10G080500' => 'tca', 'Thecc.10G080800' => 'tca', 'Thhalv10001560m.g' => 'esa', 'Thhalv10006120m.g' => 'esa', 'Thhalv10014375m.g' => 'esa', 'Thhalv10021264m.g' => 'esa', 'Thhalv10028856m.g' => 'esa', 'TPR.G1914' => 'tpr', 'TPR.G4757' => 'tpr', 'TPR.G5595' => 'tpr', 'TWI14G0952' => 'twi', 'TWI14G1307' => 'twi', 'TWI38G2143' => 'twi', 'TWI59G0826' => 'twi', 'TWI77G0527' => 'twi', 'TWI81G0150' => 'twi', 'unitig_21.g21018' => 'ugi', 'unitig_26.g9725' => 'ugi', 'unitig_744.g24653' => 'ugi', 'unitig_749.g13778' => 'ugi', 'unitig_899.g15035' => 'ugi', 'vmacro04296' => 'vma', 'vmacro04852' => 'vma', 'vmacro13404' => 'vma', 'vmacro20169' => 'vma', 'vmacro21014' => 'vma', 'VMungo0331G0237' => 'vmu', 'VMungo0331G0706' => 'vmu', 'VMungo0331G1361' => 'vmu', 'VMungo0331G1489' => 'vmu', 'VMungo0540G1037' => 'vmu', 'VMungo0720G2487' => 'vmu', 'VMungo0720G2721' => 'vmu', 'Zm00001eb086860' => 'zma', 'Zm00001eb104760' => 'zma', 'Zm00001eb148220' => 'zma', 'Zm00001eb259030' => 'zma', 'Zm00001eb289590' => 'zma', 'Zm00001eb420150' => 'zma' ), 'gf_id' => 'HOM05D000968', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000968' ), 'data_identifier' => 'HOM05D000968', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000968', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p31690' => 'bna', 'A03p36040' => 'bna', 'A03p53730' => 'bna', 'A04p01410' => 'bna', 'A05p05420' => 'bna', 'A05p39630' => 'bna', 'A05p39640' => 'bna', 'A09p00970' => 'bna', 'A09p53060' => 'bna', 'A10p31890' => 'bna', 'Aa31LG10G15040' => 'aar', 'Aa31LG1G21090' => 'aar', 'Aa31LG1G26900' => 'aar', 'Aa31LG3G1820' => 'aar', 'Aa31LG5G1100' => 'aar', 'Aa31LG6G4740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2265' => 'aag', 'Actinidia07998' => 'ach', 'Actinidia11266' => 'ach', 'Actinidia12682' => 'ach', 'Actinidia26479' => 'ach', 'Actinidia31406' => 'ach', 'Actinidia32437' => 'ach', 'Actinidia38862' => 'ach', 'Ah.05g174230' => 'amhyb', 'Ah.05g179070' => 'amhyb', 'Ah.05g179090' => 'amhyb', 'Ah.12g059950' => 'amhyb', 'AL3G20480' => 'aly', 'AL4G44520' => 'aly', 'AL5G43110' => 'aly', 'AL6G13890' => 'aly', 'AL6G52620' => 'aly', 'AL7G30830' => 'aly', 'Aqoxy1G00899' => 'aox', 'Aqoxy5G04333' => 'aox', 'Aqoxy7G00641' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3IZ0NN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4EF6AW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W9P8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79GA3M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C43NQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFCU6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G95YVJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCHK29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LU1UG8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX91RN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGB4B1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8DA0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9H7JI' => 'arhy', 'AT3G09320' => 'ath', 'AT3G60800' => 'ath', 'AT4G00840' => 'ath', 'AT4G22750' => 'ath', 'AT5G04270' => 'ath', 'ATR0090G003' => 'atr', 'ATR0559G349' => 'atr', 'ATR0680G261' => 'atr', 'ATR0810G048' => 'atr', 'Atru.chr12.831' => 'acertr', 'Atru.chr5.303' => 'acertr', 'Atru.chr5.748' => 'acertr', 'Atru.chr8.1999' => 'acertr', 'Atru.chr9.1436' => 'acertr', 'AUR62004211' => 'cqu', 'AUR62004548' => 'cqu', 'AUR62013637' => 'cqu', 'AUR62022662' => 'cqu', 'AUR62025777' => 'cqu', 'AUR62042386' => 'cqu', 'BcaB01g02310' => 'bca', 'BcaB01g06062' => 'bca', 'BcaB02g08975' => 'bca', 'BcaB02g08980' => 'bca', 'BcaC01g04228' => 'bca', 'BcaC01g06830' => 'bca', 'BcaC02g10186' => 'bca', 'BcaC02g12214' => 'bca', 'BcaC04g24101' => 'bca', 'BcaC05g29520' => 'bca', 'BcaC05g29661' => 'bca', 'BcaC06g32130' => 'bca', 'BcaC06g32131' => 'bca', 'BcaC07g40601' => 'bca', 'BcaC07g42641' => 'bca', 'BcaNung01038' => 'bca', 'BcaNung01676' => 'bca', 'BcaNung02480' => 'bca', 'BcaNung07376' => 'bca', 'BolC3t16146H' => 'bol', 'BolC3t16637H' => 'bol', 'BolC4t22257H' => 'bol', 'BolC4t24728H' => 'bol', 'BolC5t34517H' => 'bol', 'BolC7t45703H' => 'bol', 'BolC8t51166H' => 'bol', 'BolC9t53038H' => 'bol', 'BolC9t60000H' => 'bol', 'BraA01t01345Z' => 'bra', 'BraA01t01346Z' => 'bra', 'BraA01t01348Z' => 'bra', 'BraA03t12347Z' => 'bra', 'BraA03t12775Z' => 'bra', 'BraA03t14439Z' => 'bra', 'BraA04t15860Z' => 'bra', 'BraA05t19511Z' => 'bra', 'BraA05t22746Z' => 'bra', 'BraA09t35767Z' => 'bra', 'BraA09t40732Z' => 'bra', 'BraA10t45233Z' => 'bra', 'C03p38720' => 'bna', 'C03p43680' => 'bna', 'C04p06350' => 'bna', 'C04p31800' => 'bna', 'C05p58680' => 'bna', 'C07p52110' => 'bna', 'C08p35760' => 'bna', 'C09p01050' => 'bna', 'C09p72600' => 'bna', 'CAN.G106.2' => 'can', 'CAN.G1482.1' => 'can', 'CAN.G324.12' => 'can', 'CAN.G388.20' => 'can', 'CAN.G412.7' => 'can', 'CAN.G694.32' => 'can', 'CAN.G92.12' => 'can', 'CANSAT11G2353' => 'cansat', 'CANSAT21G1398' => 'cansat', 'CANSAT56G2456' => 'cansat', 'CANSAT56G3031' => 'cansat', 'CANSAT56G4539' => 'cansat', 'CARHR083680' => 'chi', 'CARHR171190' => 'chi', 'CARHR209010' => 'chi', 'CARHR229680' => 'chi', 'CARHR249490' => 'chi', 'Carub.0003s0844' => 'cru', 'Carub.0005s2755' => 'cru', 'Carub.0006s0322' => 'cru', 'Carub.0006s3586' => 'cru', 'Carub.0007s1855' => 'cru', 'Ca_07808_v3' => 'car', 'Ca_09535_v3' => 'car', 'Ca_10548_v3' => 'car', 'Ca_19913_v3' => 'car', 'Ca_19916_v3' => 'car', 'Ca_19975_v3' => 'car', 'CBR_g22876' => 'cbr', 'CBR_g22879' => 'cbr', 'CBR_g38491' => 'cbr', 'CBR_g54185' => 'cbr', 'CBR_g54190' => 'cbr', 'Cc02_g11020' => 'ccan', 'Cc02_g23920' => 'ccan', 'Cc02_g39860' => 'ccan', 'Cc02_g39870' => 'ccan', 'Cc03_g06760' => 'ccan', 'Cc06_g02450' => 'ccan', 'Cc09_g09450' => 'ccan', 'CDE02G1959' => 'cde', 'CDE04G0600' => 'cde', 'CDE07G1996' => 'cde', 'CDE07G2078' => 'cde', 'CDE11G0611' => 'cde', 'Cfa001683' => 'cfa', 'Cfa001734' => 'cfa', 'Cfa001737' => 'cfa', 'Cfa003751' => 'cfa', 'Cfa012019' => 'cfa', 'Cfa017353' => 'cfa', 'Cfa017732' => 'cfa', 'Cfa022464' => 'cfa', 'Ciclev10012400m.g' => 'ccl', 'Ciclev10021242m.g' => 'ccl', 'Ciclev10021302m.g' => 'ccl', 'Ciclev10021463m.g' => 'ccl', 'Ciclev10032359m.g' => 'ccl', 'CiPaw.01G081000' => 'cil', 'CiPaw.01G262500' => 'cil', 'CiPaw.01G269800' => 'cil', 'CiPaw.02G168400' => 'cil', 'CiPaw.05G119500' => 'cil', 'CiPaw.11G147300' => 'cil', 'ClCG01G003630' => 'cla', 'ClCG05G000510' => 'cla', 'ClCG05G002300' => 'cla', 'ClCG08G007650' => 'cla', 'ClCG10G021250' => 'cla', 'COL.COLO4_06218' => 'col', 'COL.COLO4_12538' => 'col', 'COL.COLO4_14775' => 'col', 'COL.COLO4_23875' => 'col', 'Cpa.g.sc141.16' => 'cpa', 'Cpa.g.sc169.16' => 'cpa', 'Cpa.g.sc244.4' => 'cpa', 'Cpa.g.sc244.5' => 'cpa', 'Cpa.g.sc29.87' => 'cpa', 'Cpa.g.sc53.115' => 'cpa', 'Cre03.g207502' => 'cre', 'Cre06.g277000' => 'cre', 'Cre09.g394050' => 'cre', 'CsaV3_3G007680' => 'csa', 'CsaV3_3G009710' => 'csa', 'CsaV3_3G034790' => 'csa', 'CsaV3_5G003750' => 'csa', 'CsaV3_6G036620' => 'csa', 'CSS0002288' => 'camsi', 'CSS0011250' => 'camsi', 'CSS0021619' => 'camsi', 'CSS0046701' => 'camsi', 'DCAR_006420' => 'dca', 'DCAR_006865' => 'dca', 'DCAR_008558' => 'dca', 'DCAR_028754' => 'dca', 'DCAR_028755' => 'dca', 'Dinv31218' => 'din', 'Dinv32371' => 'din', 'Dinv34250' => 'din', 'Dinv37156' => 'din', 'Dinv43704' => 'din', 'Duzib093G1811' => 'dzi', 'Duzib106G1622' => 'dzi', 'Duzib114G0504' => 'dzi', 'Duzib128G0338' => 'dzi', 'Duzib128G1577' => 'dzi', 'Duzib133G0104' => 'dzi', 'Duzib133G1080' => 'dzi', 'Duzib138G0324' => 'dzi', 'Duzib138G0394' => 'dzi', 'Duzib205G0122' => 'dzi', 'Duzib268G1020' => 'dzi', 'Duzib268G1359' => 'dzi', 'ECA232G3929' => 'eca', 'ECA236G2210' => 'eca', 'ECA236G2287' => 'eca', 'ECA240G4568' => 'eca', 'ECA247G0894' => 'eca', 'EL10Ac1g00200' => 'bvu', 'EL10Ac1g00886' => 'bvu', 'EL10As1g23091' => 'bvu', 'EL10As1g23092' => 'bvu', 'Eucgr.A01284' => 'egr', 'Eucgr.A01285' => 'egr', 'Eucgr.D02456' => 'egr', 'Eucgr.E00018' => 'egr', 'Eucgr.E01439' => 'egr', 'Eucgr.G02859' => 'egr', 'FAN01G0168' => 'fan', 'FAN01G0453' => 'fan', 'FAN01G2761' => 'fan', 'FAN02G1239' => 'fan', 'FAN03G0645' => 'fan', 'FAN03G2707' => 'fan', 'FAN03G2978' => 'fan', 'FAN04G0227' => 'fan', 'FAN06G0091' => 'fan', 'FAN06G1418' => 'fan', 'FAN06G1512' => 'fan', 'FAN06G1986' => 'fan', 'FAN06G2905' => 'fan', 'FAN06G4325' => 'fan', 'FAN08G0033' => 'fan', 'FAN09G0642' => 'fan', 'FAN10G1763' => 'fan', 'FAN10G2026' => 'fan', 'FAN10G2513' => 'fan', 'FAN10G3402' => 'fan', 'FAN10G3564' => 'fan', 'FAN10G3987' => 'fan', 'FAN13G1490' => 'fan', 'FAN14G5857' => 'fan', 'FAN18G1188' => 'fan', 'FvH4_5g00750' => 'fve', 'FvH4_6g13410' => 'fve', 'FvH4_7g11740' => 'fve', 'FvH4_7g17410' => 'fve', 'FvH4_7g18860' => 'fve', 'Glyma.01G099100' => 'gma', 'Glyma.01G142300' => 'gma', 'Glyma.03G025500' => 'gma', 'Glyma.03G069700' => 'gma', 'Glyma.03G260000' => 'gma', 'Glyma.09G269800' => 'gma', 'Glyma.10G208700' => 'gma', 'Glyma.18G220400' => 'gma', 'Glyma.20G182000' => 'gma', 'Gohir.A01G221726' => 'ghi', 'Gohir.A07G134600' => 'ghi', 'Gohir.A07G146000' => 'ghi', 'Gohir.A08G173900' => 'ghi', 'Gohir.A09G194900' => 'ghi', 'Gohir.A10G204100' => 'ghi', 'Gohir.A11G080600' => 'ghi', 'Gohir.A11G327500' => 'ghi', 'Gohir.A12G101800' => 'ghi', 'Gohir.D01G211200' => 'ghi', 'Gohir.D07G139200' => 'ghi', 'Gohir.D07G152100' => 'ghi', 'Gohir.D08G192600' => 'ghi', 'Gohir.D09G189200' => 'ghi', 'Gohir.D10G212000' => 'ghi', 'Gohir.D11G085200' => 'ghi', 'Gohir.D11G346400' => 'ghi', 'Gohir.D12G104800' => 'ghi', 'Gorai.001G151300' => 'gra', 'Gorai.001G174100' => 'gra', 'Gorai.002G257000' => 'gra', 'Gorai.004G202600' => 'gra', 'Gorai.007G090900' => 'gra', 'Gorai.007G376700' => 'gra', 'Gorai.008G114100' => 'gra', 'Gorai.011G237900' => 'gra', 'GSVIVG01005450001' => 'vvi', 'GSVIVG01016232001' => 'vvi', 'GSVIVG01026157001' => 'vvi', 'GSVIVG01027419001' => 'vvi', 'GSVIVG01027631001' => 'vvi', 'GSVIVG01034143001' => 'vvi', 'HanXRQChr03g0093921' => 'han', 'HanXRQChr04g0120001' => 'han', 'HanXRQChr04g0122561' => 'han', 'HanXRQChr09g0246851' => 'han', 'HanXRQChr10g0293311' => 'han', 'HanXRQChr13g0425231' => 'han', 'HanXRQChr16g0532571' => 'han', 'Haze_09050' => 'cav', 'Haze_15715' => 'cav', 'Haze_15716' => 'cav', 'Haze_16803' => 'cav', 'Haze_16850' => 'cav', 'Hma1.2p1_0301F.1_g118655' => 'hma', 'Hma1.2p1_0309F.1_g120590' => 'hma', 'Hma1.2p1_0936F.1_g238900' => 'hma', 'Hma1.2p1_3552F.1_g336740' => 'hma', 'HPP92_003520' => 'vpl', 'HPP92_006628' => 'vpl', 'HPP92_006645' => 'vpl', 'HPP92_014669' => 'vpl', 'HPP92_015077' => 'vpl', 'Hund16742' => 'sun', 'Hund17022' => 'sun', 'Lalb_Chr02g0152131' => 'lal', 'Lalb_Chr05g0225371' => 'lal', 'Lalb_Chr07g0189841' => 'lal', 'Lalb_Chr07g0192961' => 'lal', 'Lalb_Chr12g0208221' => 'lal', 'Lalb_Chr13g0291211' => 'lal', 'Lalb_Chr13g0291781' => 'lal', 'Lalb_Chr18g0044651' => 'lal', 'Lalb_Chr21g0313731' => 'lal', 'Lj1g0022533' => 'lja', 'Lj2A18T50' => 'lonja', 'Lj2A92G93' => 'lonja', 'Lj3A965T73' => 'lonja', 'Lj3g0000673' => 'lja', 'Lj3g0002666' => 'lja', 'Lj4g0016985' => 'lja', 'Lj5g0003625' => 'lja', 'Lj7A529G36' => 'lonja', 'Lj9A569T49' => 'lonja', 'Lj9A604T63' => 'lonja', 'Lsat_1_v5_gn_3_132060' => 'lsa', 'Lsat_1_v5_gn_4_68941' => 'lsa', 'Lsat_1_v5_gn_5_95580' => 'lsa', 'Lsat_1_v5_gn_7_161' => 'lsa', 'Lsat_1_v5_gn_7_7041' => 'lsa', 'Lsat_1_v5_gn_9_33481' => 'lsa', 'Lsat_1_v5_gn_9_68260' => 'lsa', 'Manes.01G073100' => 'mes', 'Manes.01G266300' => 'mes', 'Manes.02G033300' => 'mes', 'Manes.05G017900' => 'mes', 'Manes.05G046100' => 'mes', 'Manes.08G080900' => 'mes', 'Manes.10G049400' => 'mes', 'Mapoly0009s0186' => 'mpo', 'Mapoly0036s0118' => 'mpo', 'Mapoly0101s0046' => 'mpo', 'MBI04_g30218_MAGBIO' => 'mbi', 'MBI04_g35564_MAGBIO' => 'mbi', 'MBI12_g34011_MAGBIO' => 'mbi', 'MBI14_g04655_MAGBIO' => 'mbi', 'MCO07G653' => 'mco', 'MCO10G173' => 'mco', 'MD01G1087100' => 'mdo', 'MD01G1104200' => 'mdo', 'MD02G1205100' => 'mdo', 'MD04G1079200' => 'mdo', 'MD04G1131400' => 'mdo', 'MD07G1121600' => 'mdo', 'MD07G1157300' => 'mdo', 'MD07G1171000' => 'mdo', 'MD12G1144500' => 'mdo', 'Medtr1g094610' => 'mtr', 'Medtr4g021795' => 'mtr', 'Medtr4g023760' => 'mtr', 'Medtr7g118050' => 'mtr', 'MELO3C005582.2' => 'cme', 'MELO3C005989.2' => 'cme', 'MELO3C006192.2' => 'cme', 'MELO3C009248.2' => 'cme', 'MELO3C019817.2' => 'cme', 'Migut.B01625' => 'egut', 'Migut.B01915' => 'egut', 'Migut.F01721' => 'egut', 'Migut.J00314' => 'egut', 'MSTRG.20742' => 'ama', 'MSTRG.8134' => 'ama', 'Nitab4.5_0000096g0010' => 'nta', 'Nitab4.5_0000202g0030' => 'nta', 'Nitab4.5_0000216g0370' => 'nta', 'Nitab4.5_0000457g0230' => 'nta', 'Nitab4.5_0001702g0170' => 'nta', 'Nitab4.5_0003607g0010' => 'nta', 'Nitab4.5_0004917g0020' => 'nta', 'Nitab4.5_0007059g0010' => 'nta', 'Nitab4.5_0007184g0010' => 'nta', 'Nitab4.5_0007346g0020' => 'nta', 'Nn1g00410' => 'nnu', 'Nn1g01252' => 'nnu', 'Nn2g11168' => 'nnu', 'Nn2g13403' => 'nnu', 'Nn2g13760' => 'nnu', 'Nn4g26380' => 'nnu', 'Oeu000806.2' => 'oeu', 'Oeu005788.1' => 'oeu', 'Oeu006900.3' => 'oeu', 'Oeu007797.1' => 'oeu', 'Oeu011932.1' => 'oeu', 'Oeu022739.1' => 'oeu', 'Oeu037918.1' => 'oeu', 'Oeu055490.2' => 'oeu', 'Os01g0844400' => 'osa', 'Os02g0819100' => 'osa', 'Os03g0804300' => 'osa', 'Os05g0458000' => 'osa', 'Os07g0467800' => 'osa', 'Os12g0602200' => 'osa', 'Peaxi162Scf00013g03444' => 'pax', 'Peaxi162Scf00094g01120' => 'pax', 'Peaxi162Scf00191g01211' => 'pax', 'Peaxi162Scf00238g01110' => 'pax', 'Peaxi162Scf00330g00719' => 'pax', 'Peaxi162Scf00627g00018' => 'pax', 'PGR031G2686' => 'pgr', 'PGR042G0809' => 'pgr', 'PGR142G0193' => 'pgr', 'PGSC0003DMG400011066' => 'stu', 'PGSC0003DMG400012041' => 'stu', 'PGSC0003DMG400013678' => 'stu', 'PGSC0003DMG400023477' => 'stu', 'PGSC0003DMG400025956' => 'stu', 'PGSC0003DMG401019151' => 'stu', 'Phvul.006G116400' => 'pvu', 'Phvul.007G097300' => 'pvu', 'Phvul.010G015000' => 'pvu', 'Phvul.010G083900' => 'pvu', 'Potri.001G117100' => 'ptr', 'Potri.002G147300' => 'ptr', 'Potri.003G115600' => 'ptr', 'Potri.006G087400' => 'ptr', 'Potri.010G226100' => 'ptr', 'Potri.014G069200' => 'ptr', 'Potri.014G104000' => 'ptr', 'Potri.016G100200' => 'ptr', 'Pp3c10_20450' => 'ppa', 'Pp3c1_42400' => 'ppa', 'Pp3c3_24390' => 'ppa', 'Pp3c3_2860' => 'ppa', 'PRCOL_00003193' => 'pco', 'Prupe.2G144500' => 'ppe', 'Prupe.2G195700' => 'ppe', 'Prupe.2G209800' => 'ppe', 'Prupe.5G080000' => 'ppe', 'Prupe.6G257900' => 'ppe', 'Psat3g001160' => 'psa', 'Psat6g181880' => 'psa', 'Psat7g233720' => 'psa', 'PSO063G7587' => 'pso', 'PSO339G2145' => 'pso', 'PSO339G3369' => 'pso', 'PSO478G2747' => 'pso', 'PSO513G0140' => 'pso', 'PSO782G1614' => 'pso', 'PSO782G4889' => 'pso', 'PSO782G5485' => 'pso', 'PSO801G0241' => 'pso', 'QL07p048854' => 'qlo', 'QL08p046745' => 'qlo', 'QL08p052606' => 'qlo', 'QL08p053414' => 'qlo', 'QL08p054868' => 'qlo', 'RcHm_v2.0_Chr1g0350251' => 'rch', 'RcHm_v2.0_Chr1g0360851' => 'rch', 'RcHm_v2.0_Chr1g0362791' => 'rch', 'RcHm_v2.0_Chr3g0466281' => 'rch', 'RcHm_v2.0_Chr7g0201481' => 'rch', 'Rhsim01G0148600' => 'rsi', 'Rhsim05G0194400' => 'rsi', 'Rhsim07G0000700' => 'rsi', 'Rhsim07G0000800' => 'rsi', 'Rhsim07G0027900' => 'rsi', 'Rhsim09G0149500' => 'rsi', 'RhsimUnG0186900' => 'rsi', 'Sabra01G0089900' => 'sbr', 'Sabra02G0114700' => 'sbr', 'Sabra02G0116300' => 'sbr', 'Sabra03G0080100' => 'sbr', 'Sabra08G0024300' => 'sbr', 'Sabra10G0174300' => 'sbr', 'Sabra14G0048900' => 'sbr', 'Sabra14G0076500' => 'sbr', 'SalBow5G2513' => 'sbo', 'Sc01g0002300' => 'sci', 'Sc01g0004450' => 'sci', 'Sc06g0001680' => 'sci', 'Sc23g0003580' => 'sci', 'Sed0000913' => 'sed', 'Sed0001655' => 'sed', 'Sed0007745' => 'sed', 'Sed0010951' => 'sed', 'Sed0017599' => 'sed', 'Sed0021405' => 'sed', 'Sed0022810' => 'sed', 'SEGI_07099' => 'sgi', 'SEGI_11931' => 'sgi', 'SEGI_13187' => 'sgi', 'SEGI_29958' => 'sgi', 'SEGI_36351' => 'sgi', 'SGA_v2.0_scaffold126G33770' => 'sas', 'SGA_v2.0_scaffold153G37003' => 'sas', 'SGA_v2.0_scaffold2G01359' => 'sas', 'SGA_v2.0_scaffold5G03064' => 'sas', 'SGA_v2.0_scaffold95G28903' => 'sas', 'SHI12701' => 'shi', 'SHI26410' => 'shi', 'SHI38997' => 'shi', 'SHI53759' => 'shi', 'SHI53886' => 'shi', 'SHI54714' => 'shi', 'SMO011G0041' => 'smo', 'SMO146G0251' => 'smo', 'SMO160G0004' => 'smo', 'SMO174G0057' => 'smo', 'SMO244G0089' => 'smo', 'SMO296G0011' => 'smo', 'Solyc01g091280.3' => 'sly', 'Solyc05g047610.3' => 'sly', 'Solyc05g047640.3' => 'sly', 'Solyc05g055630.3' => 'sly', 'Solyc10g018160.2' => 'sly', 'Solyc10g084820.2' => 'sly', 'Solyc10g086565.2' => 'sly', 'Sopen01g037030' => 'spe', 'Sopen05g027920' => 'spe', 'Sopen05g034070' => 'spe', 'Sopen10g007260' => 'spe', 'Sopen10g034260' => 'spe', 'Sopen10g035950' => 'spe', 'Sp3g07710' => 'spa', 'Sp4g27420' => 'spa', 'Sp5g02450' => 'spa', 'Sp6g01280' => 'spa', 'Sp6g38480' => 'spa', 'Sp7g20780' => 'spa', 'TAR374G1413' => 'tar', 'TAR623G1777' => 'tar', 'TAR629G2370' => 'tar', 'TAR633G1759' => 'tar', 'TAR636G3387' => 'tar', 'THA.LOC104802447' => 'tha', 'THA.LOC104813916' => 'tha', 'THA.LOC104816423' => 'tha', 'THA.LOC104817246' => 'tha', 'THA.LOC104825895' => 'tha', 'Thecc.01G335200' => 'tca', 'Thecc.01G377400' => 'tca', 'Thecc.03G262200' => 'tca', 'Thecc.05G036800' => 'tca', 'Thecc.10G080500' => 'tca', 'Thecc.10G080800' => 'tca', 'Thhalv10001560m.g' => 'esa', 'Thhalv10006120m.g' => 'esa', 'Thhalv10014375m.g' => 'esa', 'Thhalv10021264m.g' => 'esa', 'Thhalv10028856m.g' => 'esa', 'TPR.G1914' => 'tpr', 'TPR.G4757' => 'tpr', 'TPR.G5595' => 'tpr', 'TWI14G0952' => 'twi', 'TWI14G1307' => 'twi', 'TWI38G2143' => 'twi', 'TWI59G0826' => 'twi', 'TWI77G0527' => 'twi', 'TWI81G0150' => 'twi', 'unitig_21.g21018' => 'ugi', 'unitig_26.g9725' => 'ugi', 'unitig_744.g24653' => 'ugi', 'unitig_749.g13778' => 'ugi', 'unitig_899.g15035' => 'ugi', 'vmacro04296' => 'vma', 'vmacro04852' => 'vma', 'vmacro13404' => 'vma', 'vmacro20169' => 'vma', 'vmacro21014' => 'vma', 'VMungo0331G0237' => 'vmu', 'VMungo0331G0706' => 'vmu', 'VMungo0331G1361' => 'vmu', 'VMungo0331G1489' => 'vmu', 'VMungo0540G1037' => 'vmu', 'VMungo0720G2487' => 'vmu', 'VMungo0720G2721' => 'vmu', 'Zm00001eb086860' => 'zma', 'Zm00001eb104760' => 'zma', 'Zm00001eb148220' => 'zma', 'Zm00001eb259030' => 'zma', 'Zm00001eb289590' => 'zma', 'Zm00001eb420150' => 'zma' ) $gf_id = 'HOM05D000968' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000968' ) $data_identifier = 'HOM05D000968' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 19, 'bol' => (int) 9, 'bra' => (int) 12, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 5, 'ccan' => (int) 7, 'cde' => (int) 5, 'cfa' => (int) 8, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 4, 'dca' => (int) 5, 'din' => (int) 5, 'dzi' => (int) 12, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 25, 'fve' => (int) 5, 'gma' => (int) 9, 'ghi' => (int) 18, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 7, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 5, 'sun' => (int) 2, 'lal' => (int) 9, 'lja' => (int) 5, 'lonja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 9, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 2, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 3, 'stu' => (int) 6, 'pvu' => (int) 4, 'ptr' => (int) 8, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 3, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 1, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 5, 'sas' => (int) 5, 'shi' => (int) 6, 'smo' => (int) 6, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 3, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420150' $species_info = array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ) $local_species = 'bra' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000968', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p31690' => 'bna', 'A03p36040' => 'bna', 'A03p53730' => 'bna', 'A04p01410' => 'bna', 'A05p05420' => 'bna', 'A05p39630' => 'bna', 'A05p39640' => 'bna', 'A09p00970' => 'bna', 'A09p53060' => 'bna', 'A10p31890' => 'bna', 'Aa31LG10G15040' => 'aar', 'Aa31LG1G21090' => 'aar', 'Aa31LG1G26900' => 'aar', 'Aa31LG3G1820' => 'aar', 'Aa31LG5G1100' => 'aar', 'Aa31LG6G4740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2265' => 'aag', 'Actinidia07998' => 'ach', 'Actinidia11266' => 'ach', 'Actinidia12682' => 'ach', 'Actinidia26479' => 'ach', 'Actinidia31406' => 'ach', 'Actinidia32437' => 'ach', 'Actinidia38862' => 'ach', 'Ah.05g174230' => 'amhyb', 'Ah.05g179070' => 'amhyb', 'Ah.05g179090' => 'amhyb', 'Ah.12g059950' => 'amhyb', 'AL3G20480' => 'aly', 'AL4G44520' => 'aly', 'AL5G43110' => 'aly', 'AL6G13890' => 'aly', 'AL6G52620' => 'aly', 'AL7G30830' => 'aly', 'Aqoxy1G00899' => 'aox', 'Aqoxy5G04333' => 'aox', 'Aqoxy7G00641' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3IZ0NN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4EF6AW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W9P8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79GA3M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C43NQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFCU6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G95YVJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCHK29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LU1UG8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX91RN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGB4B1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8DA0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9H7JI' => 'arhy', 'AT3G09320' => 'ath', 'AT3G60800' => 'ath', 'AT4G00840' => 'ath', 'AT4G22750' => 'ath', 'AT5G04270' => 'ath', 'ATR0090G003' => 'atr', 'ATR0559G349' => 'atr', 'ATR0680G261' => 'atr', 'ATR0810G048' => 'atr', 'Atru.chr12.831' => 'acertr', 'Atru.chr5.303' => 'acertr', 'Atru.chr5.748' => 'acertr', 'Atru.chr8.1999' => 'acertr', 'Atru.chr9.1436' => 'acertr', 'AUR62004211' => 'cqu', 'AUR62004548' => 'cqu', 'AUR62013637' => 'cqu', 'AUR62022662' => 'cqu', 'AUR62025777' => 'cqu', 'AUR62042386' => 'cqu', 'BcaB01g02310' => 'bca', 'BcaB01g06062' => 'bca', 'BcaB02g08975' => 'bca', 'BcaB02g08980' => 'bca', 'BcaC01g04228' => 'bca', 'BcaC01g06830' => 'bca', 'BcaC02g10186' => 'bca', 'BcaC02g12214' => 'bca', 'BcaC04g24101' => 'bca', 'BcaC05g29520' => 'bca', 'BcaC05g29661' => 'bca', 'BcaC06g32130' => 'bca', 'BcaC06g32131' => 'bca', 'BcaC07g40601' => 'bca', 'BcaC07g42641' => 'bca', 'BcaNung01038' => 'bca', 'BcaNung01676' => 'bca', 'BcaNung02480' => 'bca', 'BcaNung07376' => 'bca', 'BolC3t16146H' => 'bol', 'BolC3t16637H' => 'bol', 'BolC4t22257H' => 'bol', 'BolC4t24728H' => 'bol', 'BolC5t34517H' => 'bol', 'BolC7t45703H' => 'bol', 'BolC8t51166H' => 'bol', 'BolC9t53038H' => 'bol', 'BolC9t60000H' => 'bol', 'BraA01t01345Z' => 'bra', 'BraA01t01346Z' => 'bra', 'BraA01t01348Z' => 'bra', 'BraA03t12347Z' => 'bra', 'BraA03t12775Z' => 'bra', 'BraA03t14439Z' => 'bra', 'BraA04t15860Z' => 'bra', 'BraA05t19511Z' => 'bra', 'BraA05t22746Z' => 'bra', 'BraA09t35767Z' => 'bra', 'BraA09t40732Z' => 'bra', 'BraA10t45233Z' => 'bra', 'C03p38720' => 'bna', 'C03p43680' => 'bna', 'C04p06350' => 'bna', 'C04p31800' => 'bna', 'C05p58680' => 'bna', 'C07p52110' => 'bna', 'C08p35760' => 'bna', 'C09p01050' => 'bna', 'C09p72600' => 'bna', 'CAN.G106.2' => 'can', 'CAN.G1482.1' => 'can', 'CAN.G324.12' => 'can', 'CAN.G388.20' => 'can', 'CAN.G412.7' => 'can', 'CAN.G694.32' => 'can', 'CAN.G92.12' => 'can', 'CANSAT11G2353' => 'cansat', 'CANSAT21G1398' => 'cansat', 'CANSAT56G2456' => 'cansat', 'CANSAT56G3031' => 'cansat', 'CANSAT56G4539' => 'cansat', 'CARHR083680' => 'chi', 'CARHR171190' => 'chi', 'CARHR209010' => 'chi', 'CARHR229680' => 'chi', 'CARHR249490' => 'chi', 'Carub.0003s0844' => 'cru', 'Carub.0005s2755' => 'cru', 'Carub.0006s0322' => 'cru', 'Carub.0006s3586' => 'cru', 'Carub.0007s1855' => 'cru', 'Ca_07808_v3' => 'car', 'Ca_09535_v3' => 'car', 'Ca_10548_v3' => 'car', 'Ca_19913_v3' => 'car', 'Ca_19916_v3' => 'car', 'Ca_19975_v3' => 'car', 'CBR_g22876' => 'cbr', 'CBR_g22879' => 'cbr', 'CBR_g38491' => 'cbr', 'CBR_g54185' => 'cbr', 'CBR_g54190' => 'cbr', 'Cc02_g11020' => 'ccan', 'Cc02_g23920' => 'ccan', 'Cc02_g39860' => 'ccan', 'Cc02_g39870' => 'ccan', 'Cc03_g06760' => 'ccan', 'Cc06_g02450' => 'ccan', 'Cc09_g09450' => 'ccan', 'CDE02G1959' => 'cde', 'CDE04G0600' => 'cde', 'CDE07G1996' => 'cde', 'CDE07G2078' => 'cde', 'CDE11G0611' => 'cde', 'Cfa001683' => 'cfa', 'Cfa001734' => 'cfa', 'Cfa001737' => 'cfa', 'Cfa003751' => 'cfa', 'Cfa012019' => 'cfa', 'Cfa017353' => 'cfa', 'Cfa017732' => 'cfa', 'Cfa022464' => 'cfa', 'Ciclev10012400m.g' => 'ccl', 'Ciclev10021242m.g' => 'ccl', 'Ciclev10021302m.g' => 'ccl', 'Ciclev10021463m.g' => 'ccl', 'Ciclev10032359m.g' => 'ccl', 'CiPaw.01G081000' => 'cil', 'CiPaw.01G262500' => 'cil', 'CiPaw.01G269800' => 'cil', 'CiPaw.02G168400' => 'cil', 'CiPaw.05G119500' => 'cil', 'CiPaw.11G147300' => 'cil', 'ClCG01G003630' => 'cla', 'ClCG05G000510' => 'cla', 'ClCG05G002300' => 'cla', 'ClCG08G007650' => 'cla', 'ClCG10G021250' => 'cla', 'COL.COLO4_06218' => 'col', 'COL.COLO4_12538' => 'col', 'COL.COLO4_14775' => 'col', 'COL.COLO4_23875' => 'col', 'Cpa.g.sc141.16' => 'cpa', 'Cpa.g.sc169.16' => 'cpa', 'Cpa.g.sc244.4' => 'cpa', 'Cpa.g.sc244.5' => 'cpa', 'Cpa.g.sc29.87' => 'cpa', 'Cpa.g.sc53.115' => 'cpa', 'Cre03.g207502' => 'cre', 'Cre06.g277000' => 'cre', 'Cre09.g394050' => 'cre', 'CsaV3_3G007680' => 'csa', 'CsaV3_3G009710' => 'csa', 'CsaV3_3G034790' => 'csa', 'CsaV3_5G003750' => 'csa', 'CsaV3_6G036620' => 'csa', 'CSS0002288' => 'camsi', 'CSS0011250' => 'camsi', 'CSS0021619' => 'camsi', 'CSS0046701' => 'camsi', 'DCAR_006420' => 'dca', 'DCAR_006865' => 'dca', 'DCAR_008558' => 'dca', 'DCAR_028754' => 'dca', 'DCAR_028755' => 'dca', 'Dinv31218' => 'din', 'Dinv32371' => 'din', 'Dinv34250' => 'din', 'Dinv37156' => 'din', 'Dinv43704' => 'din', 'Duzib093G1811' => 'dzi', 'Duzib106G1622' => 'dzi', 'Duzib114G0504' => 'dzi', 'Duzib128G0338' => 'dzi', 'Duzib128G1577' => 'dzi', 'Duzib133G0104' => 'dzi', 'Duzib133G1080' => 'dzi', 'Duzib138G0324' => 'dzi', 'Duzib138G0394' => 'dzi', 'Duzib205G0122' => 'dzi', 'Duzib268G1020' => 'dzi', 'Duzib268G1359' => 'dzi', 'ECA232G3929' => 'eca', 'ECA236G2210' => 'eca', 'ECA236G2287' => 'eca', 'ECA240G4568' => 'eca', 'ECA247G0894' => 'eca', 'EL10Ac1g00200' => 'bvu', 'EL10Ac1g00886' => 'bvu', 'EL10As1g23091' => 'bvu', 'EL10As1g23092' => 'bvu', 'Eucgr.A01284' => 'egr', 'Eucgr.A01285' => 'egr', 'Eucgr.D02456' => 'egr', 'Eucgr.E00018' => 'egr', 'Eucgr.E01439' => 'egr', 'Eucgr.G02859' => 'egr', 'FAN01G0168' => 'fan', 'FAN01G0453' => 'fan', 'FAN01G2761' => 'fan', 'FAN02G1239' => 'fan', 'FAN03G0645' => 'fan', 'FAN03G2707' => 'fan', 'FAN03G2978' => 'fan', 'FAN04G0227' => 'fan', 'FAN06G0091' => 'fan', 'FAN06G1418' => 'fan', 'FAN06G1512' => 'fan', 'FAN06G1986' => 'fan', 'FAN06G2905' => 'fan', 'FAN06G4325' => 'fan', 'FAN08G0033' => 'fan', 'FAN09G0642' => 'fan', 'FAN10G1763' => 'fan', 'FAN10G2026' => 'fan', 'FAN10G2513' => 'fan', 'FAN10G3402' => 'fan', 'FAN10G3564' => 'fan', 'FAN10G3987' => 'fan', 'FAN13G1490' => 'fan', 'FAN14G5857' => 'fan', 'FAN18G1188' => 'fan', 'FvH4_5g00750' => 'fve', 'FvH4_6g13410' => 'fve', 'FvH4_7g11740' => 'fve', 'FvH4_7g17410' => 'fve', 'FvH4_7g18860' => 'fve', 'Glyma.01G099100' => 'gma', 'Glyma.01G142300' => 'gma', 'Glyma.03G025500' => 'gma', 'Glyma.03G069700' => 'gma', 'Glyma.03G260000' => 'gma', 'Glyma.09G269800' => 'gma', 'Glyma.10G208700' => 'gma', 'Glyma.18G220400' => 'gma', 'Glyma.20G182000' => 'gma', 'Gohir.A01G221726' => 'ghi', 'Gohir.A07G134600' => 'ghi', 'Gohir.A07G146000' => 'ghi', 'Gohir.A08G173900' => 'ghi', 'Gohir.A09G194900' => 'ghi', 'Gohir.A10G204100' => 'ghi', 'Gohir.A11G080600' => 'ghi', 'Gohir.A11G327500' => 'ghi', 'Gohir.A12G101800' => 'ghi', 'Gohir.D01G211200' => 'ghi', 'Gohir.D07G139200' => 'ghi', 'Gohir.D07G152100' => 'ghi', 'Gohir.D08G192600' => 'ghi', 'Gohir.D09G189200' => 'ghi', 'Gohir.D10G212000' => 'ghi', 'Gohir.D11G085200' => 'ghi', 'Gohir.D11G346400' => 'ghi', 'Gohir.D12G104800' => 'ghi', 'Gorai.001G151300' => 'gra', 'Gorai.001G174100' => 'gra', 'Gorai.002G257000' => 'gra', 'Gorai.004G202600' => 'gra', 'Gorai.007G090900' => 'gra', 'Gorai.007G376700' => 'gra', 'Gorai.008G114100' => 'gra', 'Gorai.011G237900' => 'gra', 'GSVIVG01005450001' => 'vvi', 'GSVIVG01016232001' => 'vvi', 'GSVIVG01026157001' => 'vvi', 'GSVIVG01027419001' => 'vvi', 'GSVIVG01027631001' => 'vvi', 'GSVIVG01034143001' => 'vvi', 'HanXRQChr03g0093921' => 'han', 'HanXRQChr04g0120001' => 'han', 'HanXRQChr04g0122561' => 'han', 'HanXRQChr09g0246851' => 'han', 'HanXRQChr10g0293311' => 'han', 'HanXRQChr13g0425231' => 'han', 'HanXRQChr16g0532571' => 'han', 'Haze_09050' => 'cav', 'Haze_15715' => 'cav', 'Haze_15716' => 'cav', 'Haze_16803' => 'cav', 'Haze_16850' => 'cav', 'Hma1.2p1_0301F.1_g118655' => 'hma', 'Hma1.2p1_0309F.1_g120590' => 'hma', 'Hma1.2p1_0936F.1_g238900' => 'hma', 'Hma1.2p1_3552F.1_g336740' => 'hma', 'HPP92_003520' => 'vpl', 'HPP92_006628' => 'vpl', 'HPP92_006645' => 'vpl', 'HPP92_014669' => 'vpl', 'HPP92_015077' => 'vpl', 'Hund16742' => 'sun', 'Hund17022' => 'sun', 'Lalb_Chr02g0152131' => 'lal', 'Lalb_Chr05g0225371' => 'lal', 'Lalb_Chr07g0189841' => 'lal', 'Lalb_Chr07g0192961' => 'lal', 'Lalb_Chr12g0208221' => 'lal', 'Lalb_Chr13g0291211' => 'lal', 'Lalb_Chr13g0291781' => 'lal', 'Lalb_Chr18g0044651' => 'lal', 'Lalb_Chr21g0313731' => 'lal', 'Lj1g0022533' => 'lja', 'Lj2A18T50' => 'lonja', 'Lj2A92G93' => 'lonja', 'Lj3A965T73' => 'lonja', 'Lj3g0000673' => 'lja', 'Lj3g0002666' => 'lja', 'Lj4g0016985' => 'lja', 'Lj5g0003625' => 'lja', 'Lj7A529G36' => 'lonja', 'Lj9A569T49' => 'lonja', 'Lj9A604T63' => 'lonja', 'Lsat_1_v5_gn_3_132060' => 'lsa', 'Lsat_1_v5_gn_4_68941' => 'lsa', 'Lsat_1_v5_gn_5_95580' => 'lsa', 'Lsat_1_v5_gn_7_161' => 'lsa', 'Lsat_1_v5_gn_7_7041' => 'lsa', 'Lsat_1_v5_gn_9_33481' => 'lsa', 'Lsat_1_v5_gn_9_68260' => 'lsa', 'Manes.01G073100' => 'mes', 'Manes.01G266300' => 'mes', 'Manes.02G033300' => 'mes', 'Manes.05G017900' => 'mes', 'Manes.05G046100' => 'mes', 'Manes.08G080900' => 'mes', 'Manes.10G049400' => 'mes', 'Mapoly0009s0186' => 'mpo', 'Mapoly0036s0118' => 'mpo', 'Mapoly0101s0046' => 'mpo', 'MBI04_g30218_MAGBIO' => 'mbi', 'MBI04_g35564_MAGBIO' => 'mbi', 'MBI12_g34011_MAGBIO' => 'mbi', 'MBI14_g04655_MAGBIO' => 'mbi', 'MCO07G653' => 'mco', 'MCO10G173' => 'mco', 'MD01G1087100' => 'mdo', 'MD01G1104200' => 'mdo', 'MD02G1205100' => 'mdo', 'MD04G1079200' => 'mdo', 'MD04G1131400' => 'mdo', 'MD07G1121600' => 'mdo', 'MD07G1157300' => 'mdo', 'MD07G1171000' => 'mdo', 'MD12G1144500' => 'mdo', 'Medtr1g094610' => 'mtr', 'Medtr4g021795' => 'mtr', 'Medtr4g023760' => 'mtr', 'Medtr7g118050' => 'mtr', 'MELO3C005582.2' => 'cme', 'MELO3C005989.2' => 'cme', 'MELO3C006192.2' => 'cme', 'MELO3C009248.2' => 'cme', 'MELO3C019817.2' => 'cme', 'Migut.B01625' => 'egut', 'Migut.B01915' => 'egut', 'Migut.F01721' => 'egut', 'Migut.J00314' => 'egut', 'MSTRG.20742' => 'ama', 'MSTRG.8134' => 'ama', 'Nitab4.5_0000096g0010' => 'nta', 'Nitab4.5_0000202g0030' => 'nta', 'Nitab4.5_0000216g0370' => 'nta', 'Nitab4.5_0000457g0230' => 'nta', 'Nitab4.5_0001702g0170' => 'nta', 'Nitab4.5_0003607g0010' => 'nta', 'Nitab4.5_0004917g0020' => 'nta', 'Nitab4.5_0007059g0010' => 'nta', 'Nitab4.5_0007184g0010' => 'nta', 'Nitab4.5_0007346g0020' => 'nta', 'Nn1g00410' => 'nnu', 'Nn1g01252' => 'nnu', 'Nn2g11168' => 'nnu', 'Nn2g13403' => 'nnu', 'Nn2g13760' => 'nnu', 'Nn4g26380' => 'nnu', 'Oeu000806.2' => 'oeu', 'Oeu005788.1' => 'oeu', 'Oeu006900.3' => 'oeu', 'Oeu007797.1' => 'oeu', 'Oeu011932.1' => 'oeu', 'Oeu022739.1' => 'oeu', 'Oeu037918.1' => 'oeu', 'Oeu055490.2' => 'oeu', 'Os01g0844400' => 'osa', 'Os02g0819100' => 'osa', 'Os03g0804300' => 'osa', 'Os05g0458000' => 'osa', 'Os07g0467800' => 'osa', 'Os12g0602200' => 'osa', 'Peaxi162Scf00013g03444' => 'pax', 'Peaxi162Scf00094g01120' => 'pax', 'Peaxi162Scf00191g01211' => 'pax', 'Peaxi162Scf00238g01110' => 'pax', 'Peaxi162Scf00330g00719' => 'pax', 'Peaxi162Scf00627g00018' => 'pax', 'PGR031G2686' => 'pgr', 'PGR042G0809' => 'pgr', 'PGR142G0193' => 'pgr', 'PGSC0003DMG400011066' => 'stu', 'PGSC0003DMG400012041' => 'stu', 'PGSC0003DMG400013678' => 'stu', 'PGSC0003DMG400023477' => 'stu', 'PGSC0003DMG400025956' => 'stu', 'PGSC0003DMG401019151' => 'stu', 'Phvul.006G116400' => 'pvu', 'Phvul.007G097300' => 'pvu', 'Phvul.010G015000' => 'pvu', 'Phvul.010G083900' => 'pvu', 'Potri.001G117100' => 'ptr', 'Potri.002G147300' => 'ptr', 'Potri.003G115600' => 'ptr', 'Potri.006G087400' => 'ptr', 'Potri.010G226100' => 'ptr', 'Potri.014G069200' => 'ptr', 'Potri.014G104000' => 'ptr', 'Potri.016G100200' => 'ptr', 'Pp3c10_20450' => 'ppa', 'Pp3c1_42400' => 'ppa', 'Pp3c3_24390' => 'ppa', 'Pp3c3_2860' => 'ppa', 'PRCOL_00003193' => 'pco', 'Prupe.2G144500' => 'ppe', 'Prupe.2G195700' => 'ppe', 'Prupe.2G209800' => 'ppe', 'Prupe.5G080000' => 'ppe', 'Prupe.6G257900' => 'ppe', 'Psat3g001160' => 'psa', 'Psat6g181880' => 'psa', 'Psat7g233720' => 'psa', 'PSO063G7587' => 'pso', 'PSO339G2145' => 'pso', 'PSO339G3369' => 'pso', 'PSO478G2747' => 'pso', 'PSO513G0140' => 'pso', 'PSO782G1614' => 'pso', 'PSO782G4889' => 'pso', 'PSO782G5485' => 'pso', 'PSO801G0241' => 'pso', 'QL07p048854' => 'qlo', 'QL08p046745' => 'qlo', 'QL08p052606' => 'qlo', 'QL08p053414' => 'qlo', 'QL08p054868' => 'qlo', 'RcHm_v2.0_Chr1g0350251' => 'rch', 'RcHm_v2.0_Chr1g0360851' => 'rch', 'RcHm_v2.0_Chr1g0362791' => 'rch', 'RcHm_v2.0_Chr3g0466281' => 'rch', 'RcHm_v2.0_Chr7g0201481' => 'rch', 'Rhsim01G0148600' => 'rsi', 'Rhsim05G0194400' => 'rsi', 'Rhsim07G0000700' => 'rsi', 'Rhsim07G0000800' => 'rsi', 'Rhsim07G0027900' => 'rsi', 'Rhsim09G0149500' => 'rsi', 'RhsimUnG0186900' => 'rsi', 'Sabra01G0089900' => 'sbr', 'Sabra02G0114700' => 'sbr', 'Sabra02G0116300' => 'sbr', 'Sabra03G0080100' => 'sbr', 'Sabra08G0024300' => 'sbr', 'Sabra10G0174300' => 'sbr', 'Sabra14G0048900' => 'sbr', 'Sabra14G0076500' => 'sbr', 'SalBow5G2513' => 'sbo', 'Sc01g0002300' => 'sci', 'Sc01g0004450' => 'sci', 'Sc06g0001680' => 'sci', 'Sc23g0003580' => 'sci', 'Sed0000913' => 'sed', 'Sed0001655' => 'sed', 'Sed0007745' => 'sed', 'Sed0010951' => 'sed', 'Sed0017599' => 'sed', 'Sed0021405' => 'sed', 'Sed0022810' => 'sed', 'SEGI_07099' => 'sgi', 'SEGI_11931' => 'sgi', 'SEGI_13187' => 'sgi', 'SEGI_29958' => 'sgi', 'SEGI_36351' => 'sgi', 'SGA_v2.0_scaffold126G33770' => 'sas', 'SGA_v2.0_scaffold153G37003' => 'sas', 'SGA_v2.0_scaffold2G01359' => 'sas', 'SGA_v2.0_scaffold5G03064' => 'sas', 'SGA_v2.0_scaffold95G28903' => 'sas', 'SHI12701' => 'shi', 'SHI26410' => 'shi', 'SHI38997' => 'shi', 'SHI53759' => 'shi', 'SHI53886' => 'shi', 'SHI54714' => 'shi', 'SMO011G0041' => 'smo', 'SMO146G0251' => 'smo', 'SMO160G0004' => 'smo', 'SMO174G0057' => 'smo', 'SMO244G0089' => 'smo', 'SMO296G0011' => 'smo', 'Solyc01g091280.3' => 'sly', 'Solyc05g047610.3' => 'sly', 'Solyc05g047640.3' => 'sly', 'Solyc05g055630.3' => 'sly', 'Solyc10g018160.2' => 'sly', 'Solyc10g084820.2' => 'sly', 'Solyc10g086565.2' => 'sly', 'Sopen01g037030' => 'spe', 'Sopen05g027920' => 'spe', 'Sopen05g034070' => 'spe', 'Sopen10g007260' => 'spe', 'Sopen10g034260' => 'spe', 'Sopen10g035950' => 'spe', 'Sp3g07710' => 'spa', 'Sp4g27420' => 'spa', 'Sp5g02450' => 'spa', 'Sp6g01280' => 'spa', 'Sp6g38480' => 'spa', 'Sp7g20780' => 'spa', 'TAR374G1413' => 'tar', 'TAR623G1777' => 'tar', 'TAR629G2370' => 'tar', 'TAR633G1759' => 'tar', 'TAR636G3387' => 'tar', 'THA.LOC104802447' => 'tha', 'THA.LOC104813916' => 'tha', 'THA.LOC104816423' => 'tha', 'THA.LOC104817246' => 'tha', 'THA.LOC104825895' => 'tha', 'Thecc.01G335200' => 'tca', 'Thecc.01G377400' => 'tca', 'Thecc.03G262200' => 'tca', 'Thecc.05G036800' => 'tca', 'Thecc.10G080500' => 'tca', 'Thecc.10G080800' => 'tca', 'Thhalv10001560m.g' => 'esa', 'Thhalv10006120m.g' => 'esa', 'Thhalv10014375m.g' => 'esa', 'Thhalv10021264m.g' => 'esa', 'Thhalv10028856m.g' => 'esa', 'TPR.G1914' => 'tpr', 'TPR.G4757' => 'tpr', 'TPR.G5595' => 'tpr', 'TWI14G0952' => 'twi', 'TWI14G1307' => 'twi', 'TWI38G2143' => 'twi', 'TWI59G0826' => 'twi', 'TWI77G0527' => 'twi', 'TWI81G0150' => 'twi', 'unitig_21.g21018' => 'ugi', 'unitig_26.g9725' => 'ugi', 'unitig_744.g24653' => 'ugi', 'unitig_749.g13778' => 'ugi', 'unitig_899.g15035' => 'ugi', 'vmacro04296' => 'vma', 'vmacro04852' => 'vma', 'vmacro13404' => 'vma', 'vmacro20169' => 'vma', 'vmacro21014' => 'vma', 'VMungo0331G0237' => 'vmu', 'VMungo0331G0706' => 'vmu', 'VMungo0331G1361' => 'vmu', 'VMungo0331G1489' => 'vmu', 'VMungo0540G1037' => 'vmu', 'VMungo0720G2487' => 'vmu', 'VMungo0720G2721' => 'vmu', 'Zm00001eb086860' => 'zma', 'Zm00001eb104760' => 'zma', 'Zm00001eb148220' => 'zma', 'Zm00001eb259030' => 'zma', 'Zm00001eb289590' => 'zma', 'Zm00001eb420150' => 'zma' ), 'gf_id' => 'HOM05D000968', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000968' ), 'data_identifier' => 'HOM05D000968', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000968', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p31690' => 'bna', 'A03p36040' => 'bna', 'A03p53730' => 'bna', 'A04p01410' => 'bna', 'A05p05420' => 'bna', 'A05p39630' => 'bna', 'A05p39640' => 'bna', 'A09p00970' => 'bna', 'A09p53060' => 'bna', 'A10p31890' => 'bna', 'Aa31LG10G15040' => 'aar', 'Aa31LG1G21090' => 'aar', 'Aa31LG1G26900' => 'aar', 'Aa31LG3G1820' => 'aar', 'Aa31LG5G1100' => 'aar', 'Aa31LG6G4740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2265' => 'aag', 'Actinidia07998' => 'ach', 'Actinidia11266' => 'ach', 'Actinidia12682' => 'ach', 'Actinidia26479' => 'ach', 'Actinidia31406' => 'ach', 'Actinidia32437' => 'ach', 'Actinidia38862' => 'ach', 'Ah.05g174230' => 'amhyb', 'Ah.05g179070' => 'amhyb', 'Ah.05g179090' => 'amhyb', 'Ah.12g059950' => 'amhyb', 'AL3G20480' => 'aly', 'AL4G44520' => 'aly', 'AL5G43110' => 'aly', 'AL6G13890' => 'aly', 'AL6G52620' => 'aly', 'AL7G30830' => 'aly', 'Aqoxy1G00899' => 'aox', 'Aqoxy5G04333' => 'aox', 'Aqoxy7G00641' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3IZ0NN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4EF6AW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W9P8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79GA3M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C43NQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFCU6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G95YVJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCHK29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LU1UG8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX91RN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGB4B1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8DA0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9H7JI' => 'arhy', 'AT3G09320' => 'ath', 'AT3G60800' => 'ath', 'AT4G00840' => 'ath', 'AT4G22750' => 'ath', 'AT5G04270' => 'ath', 'ATR0090G003' => 'atr', 'ATR0559G349' => 'atr', 'ATR0680G261' => 'atr', 'ATR0810G048' => 'atr', 'Atru.chr12.831' => 'acertr', 'Atru.chr5.303' => 'acertr', 'Atru.chr5.748' => 'acertr', 'Atru.chr8.1999' => 'acertr', 'Atru.chr9.1436' => 'acertr', 'AUR62004211' => 'cqu', 'AUR62004548' => 'cqu', 'AUR62013637' => 'cqu', 'AUR62022662' => 'cqu', 'AUR62025777' => 'cqu', 'AUR62042386' => 'cqu', 'BcaB01g02310' => 'bca', 'BcaB01g06062' => 'bca', 'BcaB02g08975' => 'bca', 'BcaB02g08980' => 'bca', 'BcaC01g04228' => 'bca', 'BcaC01g06830' => 'bca', 'BcaC02g10186' => 'bca', 'BcaC02g12214' => 'bca', 'BcaC04g24101' => 'bca', 'BcaC05g29520' => 'bca', 'BcaC05g29661' => 'bca', 'BcaC06g32130' => 'bca', 'BcaC06g32131' => 'bca', 'BcaC07g40601' => 'bca', 'BcaC07g42641' => 'bca', 'BcaNung01038' => 'bca', 'BcaNung01676' => 'bca', 'BcaNung02480' => 'bca', 'BcaNung07376' => 'bca', 'BolC3t16146H' => 'bol', 'BolC3t16637H' => 'bol', 'BolC4t22257H' => 'bol', 'BolC4t24728H' => 'bol', 'BolC5t34517H' => 'bol', 'BolC7t45703H' => 'bol', 'BolC8t51166H' => 'bol', 'BolC9t53038H' => 'bol', 'BolC9t60000H' => 'bol', 'BraA01t01345Z' => 'bra', 'BraA01t01346Z' => 'bra', 'BraA01t01348Z' => 'bra', 'BraA03t12347Z' => 'bra', 'BraA03t12775Z' => 'bra', 'BraA03t14439Z' => 'bra', 'BraA04t15860Z' => 'bra', 'BraA05t19511Z' => 'bra', 'BraA05t22746Z' => 'bra', 'BraA09t35767Z' => 'bra', 'BraA09t40732Z' => 'bra', 'BraA10t45233Z' => 'bra', 'C03p38720' => 'bna', 'C03p43680' => 'bna', 'C04p06350' => 'bna', 'C04p31800' => 'bna', 'C05p58680' => 'bna', 'C07p52110' => 'bna', 'C08p35760' => 'bna', 'C09p01050' => 'bna', 'C09p72600' => 'bna', 'CAN.G106.2' => 'can', 'CAN.G1482.1' => 'can', 'CAN.G324.12' => 'can', 'CAN.G388.20' => 'can', 'CAN.G412.7' => 'can', 'CAN.G694.32' => 'can', 'CAN.G92.12' => 'can', 'CANSAT11G2353' => 'cansat', 'CANSAT21G1398' => 'cansat', 'CANSAT56G2456' => 'cansat', 'CANSAT56G3031' => 'cansat', 'CANSAT56G4539' => 'cansat', 'CARHR083680' => 'chi', 'CARHR171190' => 'chi', 'CARHR209010' => 'chi', 'CARHR229680' => 'chi', 'CARHR249490' => 'chi', 'Carub.0003s0844' => 'cru', 'Carub.0005s2755' => 'cru', 'Carub.0006s0322' => 'cru', 'Carub.0006s3586' => 'cru', 'Carub.0007s1855' => 'cru', 'Ca_07808_v3' => 'car', 'Ca_09535_v3' => 'car', 'Ca_10548_v3' => 'car', 'Ca_19913_v3' => 'car', 'Ca_19916_v3' => 'car', 'Ca_19975_v3' => 'car', 'CBR_g22876' => 'cbr', 'CBR_g22879' => 'cbr', 'CBR_g38491' => 'cbr', 'CBR_g54185' => 'cbr', 'CBR_g54190' => 'cbr', 'Cc02_g11020' => 'ccan', 'Cc02_g23920' => 'ccan', 'Cc02_g39860' => 'ccan', 'Cc02_g39870' => 'ccan', 'Cc03_g06760' => 'ccan', 'Cc06_g02450' => 'ccan', 'Cc09_g09450' => 'ccan', 'CDE02G1959' => 'cde', 'CDE04G0600' => 'cde', 'CDE07G1996' => 'cde', 'CDE07G2078' => 'cde', 'CDE11G0611' => 'cde', 'Cfa001683' => 'cfa', 'Cfa001734' => 'cfa', 'Cfa001737' => 'cfa', 'Cfa003751' => 'cfa', 'Cfa012019' => 'cfa', 'Cfa017353' => 'cfa', 'Cfa017732' => 'cfa', 'Cfa022464' => 'cfa', 'Ciclev10012400m.g' => 'ccl', 'Ciclev10021242m.g' => 'ccl', 'Ciclev10021302m.g' => 'ccl', 'Ciclev10021463m.g' => 'ccl', 'Ciclev10032359m.g' => 'ccl', 'CiPaw.01G081000' => 'cil', 'CiPaw.01G262500' => 'cil', 'CiPaw.01G269800' => 'cil', 'CiPaw.02G168400' => 'cil', 'CiPaw.05G119500' => 'cil', 'CiPaw.11G147300' => 'cil', 'ClCG01G003630' => 'cla', 'ClCG05G000510' => 'cla', 'ClCG05G002300' => 'cla', 'ClCG08G007650' => 'cla', 'ClCG10G021250' => 'cla', 'COL.COLO4_06218' => 'col', 'COL.COLO4_12538' => 'col', 'COL.COLO4_14775' => 'col', 'COL.COLO4_23875' => 'col', 'Cpa.g.sc141.16' => 'cpa', 'Cpa.g.sc169.16' => 'cpa', 'Cpa.g.sc244.4' => 'cpa', 'Cpa.g.sc244.5' => 'cpa', 'Cpa.g.sc29.87' => 'cpa', 'Cpa.g.sc53.115' => 'cpa', 'Cre03.g207502' => 'cre', 'Cre06.g277000' => 'cre', 'Cre09.g394050' => 'cre', 'CsaV3_3G007680' => 'csa', 'CsaV3_3G009710' => 'csa', 'CsaV3_3G034790' => 'csa', 'CsaV3_5G003750' => 'csa', 'CsaV3_6G036620' => 'csa', 'CSS0002288' => 'camsi', 'CSS0011250' => 'camsi', 'CSS0021619' => 'camsi', 'CSS0046701' => 'camsi', 'DCAR_006420' => 'dca', 'DCAR_006865' => 'dca', 'DCAR_008558' => 'dca', 'DCAR_028754' => 'dca', 'DCAR_028755' => 'dca', 'Dinv31218' => 'din', 'Dinv32371' => 'din', 'Dinv34250' => 'din', 'Dinv37156' => 'din', 'Dinv43704' => 'din', 'Duzib093G1811' => 'dzi', 'Duzib106G1622' => 'dzi', 'Duzib114G0504' => 'dzi', 'Duzib128G0338' => 'dzi', 'Duzib128G1577' => 'dzi', 'Duzib133G0104' => 'dzi', 'Duzib133G1080' => 'dzi', 'Duzib138G0324' => 'dzi', 'Duzib138G0394' => 'dzi', 'Duzib205G0122' => 'dzi', 'Duzib268G1020' => 'dzi', 'Duzib268G1359' => 'dzi', 'ECA232G3929' => 'eca', 'ECA236G2210' => 'eca', 'ECA236G2287' => 'eca', 'ECA240G4568' => 'eca', 'ECA247G0894' => 'eca', 'EL10Ac1g00200' => 'bvu', 'EL10Ac1g00886' => 'bvu', 'EL10As1g23091' => 'bvu', 'EL10As1g23092' => 'bvu', 'Eucgr.A01284' => 'egr', 'Eucgr.A01285' => 'egr', 'Eucgr.D02456' => 'egr', 'Eucgr.E00018' => 'egr', 'Eucgr.E01439' => 'egr', 'Eucgr.G02859' => 'egr', 'FAN01G0168' => 'fan', 'FAN01G0453' => 'fan', 'FAN01G2761' => 'fan', 'FAN02G1239' => 'fan', 'FAN03G0645' => 'fan', 'FAN03G2707' => 'fan', 'FAN03G2978' => 'fan', 'FAN04G0227' => 'fan', 'FAN06G0091' => 'fan', 'FAN06G1418' => 'fan', 'FAN06G1512' => 'fan', 'FAN06G1986' => 'fan', 'FAN06G2905' => 'fan', 'FAN06G4325' => 'fan', 'FAN08G0033' => 'fan', 'FAN09G0642' => 'fan', 'FAN10G1763' => 'fan', 'FAN10G2026' => 'fan', 'FAN10G2513' => 'fan', 'FAN10G3402' => 'fan', 'FAN10G3564' => 'fan', 'FAN10G3987' => 'fan', 'FAN13G1490' => 'fan', 'FAN14G5857' => 'fan', 'FAN18G1188' => 'fan', 'FvH4_5g00750' => 'fve', 'FvH4_6g13410' => 'fve', 'FvH4_7g11740' => 'fve', 'FvH4_7g17410' => 'fve', 'FvH4_7g18860' => 'fve', 'Glyma.01G099100' => 'gma', 'Glyma.01G142300' => 'gma', 'Glyma.03G025500' => 'gma', 'Glyma.03G069700' => 'gma', 'Glyma.03G260000' => 'gma', 'Glyma.09G269800' => 'gma', 'Glyma.10G208700' => 'gma', 'Glyma.18G220400' => 'gma', 'Glyma.20G182000' => 'gma', 'Gohir.A01G221726' => 'ghi', 'Gohir.A07G134600' => 'ghi', 'Gohir.A07G146000' => 'ghi', 'Gohir.A08G173900' => 'ghi', 'Gohir.A09G194900' => 'ghi', 'Gohir.A10G204100' => 'ghi', 'Gohir.A11G080600' => 'ghi', 'Gohir.A11G327500' => 'ghi', 'Gohir.A12G101800' => 'ghi', 'Gohir.D01G211200' => 'ghi', 'Gohir.D07G139200' => 'ghi', 'Gohir.D07G152100' => 'ghi', 'Gohir.D08G192600' => 'ghi', 'Gohir.D09G189200' => 'ghi', 'Gohir.D10G212000' => 'ghi', 'Gohir.D11G085200' => 'ghi', 'Gohir.D11G346400' => 'ghi', 'Gohir.D12G104800' => 'ghi', 'Gorai.001G151300' => 'gra', 'Gorai.001G174100' => 'gra', 'Gorai.002G257000' => 'gra', 'Gorai.004G202600' => 'gra', 'Gorai.007G090900' => 'gra', 'Gorai.007G376700' => 'gra', 'Gorai.008G114100' => 'gra', 'Gorai.011G237900' => 'gra', 'GSVIVG01005450001' => 'vvi', 'GSVIVG01016232001' => 'vvi', 'GSVIVG01026157001' => 'vvi', 'GSVIVG01027419001' => 'vvi', 'GSVIVG01027631001' => 'vvi', 'GSVIVG01034143001' => 'vvi', 'HanXRQChr03g0093921' => 'han', 'HanXRQChr04g0120001' => 'han', 'HanXRQChr04g0122561' => 'han', 'HanXRQChr09g0246851' => 'han', 'HanXRQChr10g0293311' => 'han', 'HanXRQChr13g0425231' => 'han', 'HanXRQChr16g0532571' => 'han', 'Haze_09050' => 'cav', 'Haze_15715' => 'cav', 'Haze_15716' => 'cav', 'Haze_16803' => 'cav', 'Haze_16850' => 'cav', 'Hma1.2p1_0301F.1_g118655' => 'hma', 'Hma1.2p1_0309F.1_g120590' => 'hma', 'Hma1.2p1_0936F.1_g238900' => 'hma', 'Hma1.2p1_3552F.1_g336740' => 'hma', 'HPP92_003520' => 'vpl', 'HPP92_006628' => 'vpl', 'HPP92_006645' => 'vpl', 'HPP92_014669' => 'vpl', 'HPP92_015077' => 'vpl', 'Hund16742' => 'sun', 'Hund17022' => 'sun', 'Lalb_Chr02g0152131' => 'lal', 'Lalb_Chr05g0225371' => 'lal', 'Lalb_Chr07g0189841' => 'lal', 'Lalb_Chr07g0192961' => 'lal', 'Lalb_Chr12g0208221' => 'lal', 'Lalb_Chr13g0291211' => 'lal', 'Lalb_Chr13g0291781' => 'lal', 'Lalb_Chr18g0044651' => 'lal', 'Lalb_Chr21g0313731' => 'lal', 'Lj1g0022533' => 'lja', 'Lj2A18T50' => 'lonja', 'Lj2A92G93' => 'lonja', 'Lj3A965T73' => 'lonja', 'Lj3g0000673' => 'lja', 'Lj3g0002666' => 'lja', 'Lj4g0016985' => 'lja', 'Lj5g0003625' => 'lja', 'Lj7A529G36' => 'lonja', 'Lj9A569T49' => 'lonja', 'Lj9A604T63' => 'lonja', 'Lsat_1_v5_gn_3_132060' => 'lsa', 'Lsat_1_v5_gn_4_68941' => 'lsa', 'Lsat_1_v5_gn_5_95580' => 'lsa', 'Lsat_1_v5_gn_7_161' => 'lsa', 'Lsat_1_v5_gn_7_7041' => 'lsa', 'Lsat_1_v5_gn_9_33481' => 'lsa', 'Lsat_1_v5_gn_9_68260' => 'lsa', 'Manes.01G073100' => 'mes', 'Manes.01G266300' => 'mes', 'Manes.02G033300' => 'mes', 'Manes.05G017900' => 'mes', 'Manes.05G046100' => 'mes', 'Manes.08G080900' => 'mes', 'Manes.10G049400' => 'mes', 'Mapoly0009s0186' => 'mpo', 'Mapoly0036s0118' => 'mpo', 'Mapoly0101s0046' => 'mpo', 'MBI04_g30218_MAGBIO' => 'mbi', 'MBI04_g35564_MAGBIO' => 'mbi', 'MBI12_g34011_MAGBIO' => 'mbi', 'MBI14_g04655_MAGBIO' => 'mbi', 'MCO07G653' => 'mco', 'MCO10G173' => 'mco', 'MD01G1087100' => 'mdo', 'MD01G1104200' => 'mdo', 'MD02G1205100' => 'mdo', 'MD04G1079200' => 'mdo', 'MD04G1131400' => 'mdo', 'MD07G1121600' => 'mdo', 'MD07G1157300' => 'mdo', 'MD07G1171000' => 'mdo', 'MD12G1144500' => 'mdo', 'Medtr1g094610' => 'mtr', 'Medtr4g021795' => 'mtr', 'Medtr4g023760' => 'mtr', 'Medtr7g118050' => 'mtr', 'MELO3C005582.2' => 'cme', 'MELO3C005989.2' => 'cme', 'MELO3C006192.2' => 'cme', 'MELO3C009248.2' => 'cme', 'MELO3C019817.2' => 'cme', 'Migut.B01625' => 'egut', 'Migut.B01915' => 'egut', 'Migut.F01721' => 'egut', 'Migut.J00314' => 'egut', 'MSTRG.20742' => 'ama', 'MSTRG.8134' => 'ama', 'Nitab4.5_0000096g0010' => 'nta', 'Nitab4.5_0000202g0030' => 'nta', 'Nitab4.5_0000216g0370' => 'nta', 'Nitab4.5_0000457g0230' => 'nta', 'Nitab4.5_0001702g0170' => 'nta', 'Nitab4.5_0003607g0010' => 'nta', 'Nitab4.5_0004917g0020' => 'nta', 'Nitab4.5_0007059g0010' => 'nta', 'Nitab4.5_0007184g0010' => 'nta', 'Nitab4.5_0007346g0020' => 'nta', 'Nn1g00410' => 'nnu', 'Nn1g01252' => 'nnu', 'Nn2g11168' => 'nnu', 'Nn2g13403' => 'nnu', 'Nn2g13760' => 'nnu', 'Nn4g26380' => 'nnu', 'Oeu000806.2' => 'oeu', 'Oeu005788.1' => 'oeu', 'Oeu006900.3' => 'oeu', 'Oeu007797.1' => 'oeu', 'Oeu011932.1' => 'oeu', 'Oeu022739.1' => 'oeu', 'Oeu037918.1' => 'oeu', 'Oeu055490.2' => 'oeu', 'Os01g0844400' => 'osa', 'Os02g0819100' => 'osa', 'Os03g0804300' => 'osa', 'Os05g0458000' => 'osa', 'Os07g0467800' => 'osa', 'Os12g0602200' => 'osa', 'Peaxi162Scf00013g03444' => 'pax', 'Peaxi162Scf00094g01120' => 'pax', 'Peaxi162Scf00191g01211' => 'pax', 'Peaxi162Scf00238g01110' => 'pax', 'Peaxi162Scf00330g00719' => 'pax', 'Peaxi162Scf00627g00018' => 'pax', 'PGR031G2686' => 'pgr', 'PGR042G0809' => 'pgr', 'PGR142G0193' => 'pgr', 'PGSC0003DMG400011066' => 'stu', 'PGSC0003DMG400012041' => 'stu', 'PGSC0003DMG400013678' => 'stu', 'PGSC0003DMG400023477' => 'stu', 'PGSC0003DMG400025956' => 'stu', 'PGSC0003DMG401019151' => 'stu', 'Phvul.006G116400' => 'pvu', 'Phvul.007G097300' => 'pvu', 'Phvul.010G015000' => 'pvu', 'Phvul.010G083900' => 'pvu', 'Potri.001G117100' => 'ptr', 'Potri.002G147300' => 'ptr', 'Potri.003G115600' => 'ptr', 'Potri.006G087400' => 'ptr', 'Potri.010G226100' => 'ptr', 'Potri.014G069200' => 'ptr', 'Potri.014G104000' => 'ptr', 'Potri.016G100200' => 'ptr', 'Pp3c10_20450' => 'ppa', 'Pp3c1_42400' => 'ppa', 'Pp3c3_24390' => 'ppa', 'Pp3c3_2860' => 'ppa', 'PRCOL_00003193' => 'pco', 'Prupe.2G144500' => 'ppe', 'Prupe.2G195700' => 'ppe', 'Prupe.2G209800' => 'ppe', 'Prupe.5G080000' => 'ppe', 'Prupe.6G257900' => 'ppe', 'Psat3g001160' => 'psa', 'Psat6g181880' => 'psa', 'Psat7g233720' => 'psa', 'PSO063G7587' => 'pso', 'PSO339G2145' => 'pso', 'PSO339G3369' => 'pso', 'PSO478G2747' => 'pso', 'PSO513G0140' => 'pso', 'PSO782G1614' => 'pso', 'PSO782G4889' => 'pso', 'PSO782G5485' => 'pso', 'PSO801G0241' => 'pso', 'QL07p048854' => 'qlo', 'QL08p046745' => 'qlo', 'QL08p052606' => 'qlo', 'QL08p053414' => 'qlo', 'QL08p054868' => 'qlo', 'RcHm_v2.0_Chr1g0350251' => 'rch', 'RcHm_v2.0_Chr1g0360851' => 'rch', 'RcHm_v2.0_Chr1g0362791' => 'rch', 'RcHm_v2.0_Chr3g0466281' => 'rch', 'RcHm_v2.0_Chr7g0201481' => 'rch', 'Rhsim01G0148600' => 'rsi', 'Rhsim05G0194400' => 'rsi', 'Rhsim07G0000700' => 'rsi', 'Rhsim07G0000800' => 'rsi', 'Rhsim07G0027900' => 'rsi', 'Rhsim09G0149500' => 'rsi', 'RhsimUnG0186900' => 'rsi', 'Sabra01G0089900' => 'sbr', 'Sabra02G0114700' => 'sbr', 'Sabra02G0116300' => 'sbr', 'Sabra03G0080100' => 'sbr', 'Sabra08G0024300' => 'sbr', 'Sabra10G0174300' => 'sbr', 'Sabra14G0048900' => 'sbr', 'Sabra14G0076500' => 'sbr', 'SalBow5G2513' => 'sbo', 'Sc01g0002300' => 'sci', 'Sc01g0004450' => 'sci', 'Sc06g0001680' => 'sci', 'Sc23g0003580' => 'sci', 'Sed0000913' => 'sed', 'Sed0001655' => 'sed', 'Sed0007745' => 'sed', 'Sed0010951' => 'sed', 'Sed0017599' => 'sed', 'Sed0021405' => 'sed', 'Sed0022810' => 'sed', 'SEGI_07099' => 'sgi', 'SEGI_11931' => 'sgi', 'SEGI_13187' => 'sgi', 'SEGI_29958' => 'sgi', 'SEGI_36351' => 'sgi', 'SGA_v2.0_scaffold126G33770' => 'sas', 'SGA_v2.0_scaffold153G37003' => 'sas', 'SGA_v2.0_scaffold2G01359' => 'sas', 'SGA_v2.0_scaffold5G03064' => 'sas', 'SGA_v2.0_scaffold95G28903' => 'sas', 'SHI12701' => 'shi', 'SHI26410' => 'shi', 'SHI38997' => 'shi', 'SHI53759' => 'shi', 'SHI53886' => 'shi', 'SHI54714' => 'shi', 'SMO011G0041' => 'smo', 'SMO146G0251' => 'smo', 'SMO160G0004' => 'smo', 'SMO174G0057' => 'smo', 'SMO244G0089' => 'smo', 'SMO296G0011' => 'smo', 'Solyc01g091280.3' => 'sly', 'Solyc05g047610.3' => 'sly', 'Solyc05g047640.3' => 'sly', 'Solyc05g055630.3' => 'sly', 'Solyc10g018160.2' => 'sly', 'Solyc10g084820.2' => 'sly', 'Solyc10g086565.2' => 'sly', 'Sopen01g037030' => 'spe', 'Sopen05g027920' => 'spe', 'Sopen05g034070' => 'spe', 'Sopen10g007260' => 'spe', 'Sopen10g034260' => 'spe', 'Sopen10g035950' => 'spe', 'Sp3g07710' => 'spa', 'Sp4g27420' => 'spa', 'Sp5g02450' => 'spa', 'Sp6g01280' => 'spa', 'Sp6g38480' => 'spa', 'Sp7g20780' => 'spa', 'TAR374G1413' => 'tar', 'TAR623G1777' => 'tar', 'TAR629G2370' => 'tar', 'TAR633G1759' => 'tar', 'TAR636G3387' => 'tar', 'THA.LOC104802447' => 'tha', 'THA.LOC104813916' => 'tha', 'THA.LOC104816423' => 'tha', 'THA.LOC104817246' => 'tha', 'THA.LOC104825895' => 'tha', 'Thecc.01G335200' => 'tca', 'Thecc.01G377400' => 'tca', 'Thecc.03G262200' => 'tca', 'Thecc.05G036800' => 'tca', 'Thecc.10G080500' => 'tca', 'Thecc.10G080800' => 'tca', 'Thhalv10001560m.g' => 'esa', 'Thhalv10006120m.g' => 'esa', 'Thhalv10014375m.g' => 'esa', 'Thhalv10021264m.g' => 'esa', 'Thhalv10028856m.g' => 'esa', 'TPR.G1914' => 'tpr', 'TPR.G4757' => 'tpr', 'TPR.G5595' => 'tpr', 'TWI14G0952' => 'twi', 'TWI14G1307' => 'twi', 'TWI38G2143' => 'twi', 'TWI59G0826' => 'twi', 'TWI77G0527' => 'twi', 'TWI81G0150' => 'twi', 'unitig_21.g21018' => 'ugi', 'unitig_26.g9725' => 'ugi', 'unitig_744.g24653' => 'ugi', 'unitig_749.g13778' => 'ugi', 'unitig_899.g15035' => 'ugi', 'vmacro04296' => 'vma', 'vmacro04852' => 'vma', 'vmacro13404' => 'vma', 'vmacro20169' => 'vma', 'vmacro21014' => 'vma', 'VMungo0331G0237' => 'vmu', 'VMungo0331G0706' => 'vmu', 'VMungo0331G1361' => 'vmu', 'VMungo0331G1489' => 'vmu', 'VMungo0540G1037' => 'vmu', 'VMungo0720G2487' => 'vmu', 'VMungo0720G2721' => 'vmu', 'Zm00001eb086860' => 'zma', 'Zm00001eb104760' => 'zma', 'Zm00001eb148220' => 'zma', 'Zm00001eb259030' => 'zma', 'Zm00001eb289590' => 'zma', 'Zm00001eb420150' => 'zma' ) $gf_id = 'HOM05D000968' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000968' ) $data_identifier = 'HOM05D000968' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 19, 'bol' => (int) 9, 'bra' => (int) 12, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 5, 'ccan' => (int) 7, 'cde' => (int) 5, 'cfa' => (int) 8, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 4, 'dca' => (int) 5, 'din' => (int) 5, 'dzi' => (int) 12, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 25, 'fve' => (int) 5, 'gma' => (int) 9, 'ghi' => (int) 18, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 7, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 5, 'sun' => (int) 2, 'lal' => (int) 9, 'lja' => (int) 5, 'lonja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 9, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 2, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 3, 'stu' => (int) 6, 'pvu' => (int) 4, 'ptr' => (int) 8, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 3, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 1, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 5, 'sas' => (int) 5, 'shi' => (int) 6, 'smo' => (int) 6, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 3, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420150' $species_info = array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ) $local_species = 'bra' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000968', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p31690' => 'bna', 'A03p36040' => 'bna', 'A03p53730' => 'bna', 'A04p01410' => 'bna', 'A05p05420' => 'bna', 'A05p39630' => 'bna', 'A05p39640' => 'bna', 'A09p00970' => 'bna', 'A09p53060' => 'bna', 'A10p31890' => 'bna', 'Aa31LG10G15040' => 'aar', 'Aa31LG1G21090' => 'aar', 'Aa31LG1G26900' => 'aar', 'Aa31LG3G1820' => 'aar', 'Aa31LG5G1100' => 'aar', 'Aa31LG6G4740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2265' => 'aag', 'Actinidia07998' => 'ach', 'Actinidia11266' => 'ach', 'Actinidia12682' => 'ach', 'Actinidia26479' => 'ach', 'Actinidia31406' => 'ach', 'Actinidia32437' => 'ach', 'Actinidia38862' => 'ach', 'Ah.05g174230' => 'amhyb', 'Ah.05g179070' => 'amhyb', 'Ah.05g179090' => 'amhyb', 'Ah.12g059950' => 'amhyb', 'AL3G20480' => 'aly', 'AL4G44520' => 'aly', 'AL5G43110' => 'aly', 'AL6G13890' => 'aly', 'AL6G52620' => 'aly', 'AL7G30830' => 'aly', 'Aqoxy1G00899' => 'aox', 'Aqoxy5G04333' => 'aox', 'Aqoxy7G00641' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3IZ0NN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4EF6AW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W9P8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79GA3M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C43NQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFCU6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G95YVJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCHK29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LU1UG8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX91RN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGB4B1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8DA0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9H7JI' => 'arhy', 'AT3G09320' => 'ath', 'AT3G60800' => 'ath', 'AT4G00840' => 'ath', 'AT4G22750' => 'ath', 'AT5G04270' => 'ath', 'ATR0090G003' => 'atr', 'ATR0559G349' => 'atr', 'ATR0680G261' => 'atr', 'ATR0810G048' => 'atr', 'Atru.chr12.831' => 'acertr', 'Atru.chr5.303' => 'acertr', 'Atru.chr5.748' => 'acertr', 'Atru.chr8.1999' => 'acertr', 'Atru.chr9.1436' => 'acertr', 'AUR62004211' => 'cqu', 'AUR62004548' => 'cqu', 'AUR62013637' => 'cqu', 'AUR62022662' => 'cqu', 'AUR62025777' => 'cqu', 'AUR62042386' => 'cqu', 'BcaB01g02310' => 'bca', 'BcaB01g06062' => 'bca', 'BcaB02g08975' => 'bca', 'BcaB02g08980' => 'bca', 'BcaC01g04228' => 'bca', 'BcaC01g06830' => 'bca', 'BcaC02g10186' => 'bca', 'BcaC02g12214' => 'bca', 'BcaC04g24101' => 'bca', 'BcaC05g29520' => 'bca', 'BcaC05g29661' => 'bca', 'BcaC06g32130' => 'bca', 'BcaC06g32131' => 'bca', 'BcaC07g40601' => 'bca', 'BcaC07g42641' => 'bca', 'BcaNung01038' => 'bca', 'BcaNung01676' => 'bca', 'BcaNung02480' => 'bca', 'BcaNung07376' => 'bca', 'BolC3t16146H' => 'bol', 'BolC3t16637H' => 'bol', 'BolC4t22257H' => 'bol', 'BolC4t24728H' => 'bol', 'BolC5t34517H' => 'bol', 'BolC7t45703H' => 'bol', 'BolC8t51166H' => 'bol', 'BolC9t53038H' => 'bol', 'BolC9t60000H' => 'bol', 'BraA01t01345Z' => 'bra', 'BraA01t01346Z' => 'bra', 'BraA01t01348Z' => 'bra', 'BraA03t12347Z' => 'bra', 'BraA03t12775Z' => 'bra', 'BraA03t14439Z' => 'bra', 'BraA04t15860Z' => 'bra', 'BraA05t19511Z' => 'bra', 'BraA05t22746Z' => 'bra', 'BraA09t35767Z' => 'bra', 'BraA09t40732Z' => 'bra', 'BraA10t45233Z' => 'bra', 'C03p38720' => 'bna', 'C03p43680' => 'bna', 'C04p06350' => 'bna', 'C04p31800' => 'bna', 'C05p58680' => 'bna', 'C07p52110' => 'bna', 'C08p35760' => 'bna', 'C09p01050' => 'bna', 'C09p72600' => 'bna', 'CAN.G106.2' => 'can', 'CAN.G1482.1' => 'can', 'CAN.G324.12' => 'can', 'CAN.G388.20' => 'can', 'CAN.G412.7' => 'can', 'CAN.G694.32' => 'can', 'CAN.G92.12' => 'can', 'CANSAT11G2353' => 'cansat', 'CANSAT21G1398' => 'cansat', 'CANSAT56G2456' => 'cansat', 'CANSAT56G3031' => 'cansat', 'CANSAT56G4539' => 'cansat', 'CARHR083680' => 'chi', 'CARHR171190' => 'chi', 'CARHR209010' => 'chi', 'CARHR229680' => 'chi', 'CARHR249490' => 'chi', 'Carub.0003s0844' => 'cru', 'Carub.0005s2755' => 'cru', 'Carub.0006s0322' => 'cru', 'Carub.0006s3586' => 'cru', 'Carub.0007s1855' => 'cru', 'Ca_07808_v3' => 'car', 'Ca_09535_v3' => 'car', 'Ca_10548_v3' => 'car', 'Ca_19913_v3' => 'car', 'Ca_19916_v3' => 'car', 'Ca_19975_v3' => 'car', 'CBR_g22876' => 'cbr', 'CBR_g22879' => 'cbr', 'CBR_g38491' => 'cbr', 'CBR_g54185' => 'cbr', 'CBR_g54190' => 'cbr', 'Cc02_g11020' => 'ccan', 'Cc02_g23920' => 'ccan', 'Cc02_g39860' => 'ccan', 'Cc02_g39870' => 'ccan', 'Cc03_g06760' => 'ccan', 'Cc06_g02450' => 'ccan', 'Cc09_g09450' => 'ccan', 'CDE02G1959' => 'cde', 'CDE04G0600' => 'cde', 'CDE07G1996' => 'cde', 'CDE07G2078' => 'cde', 'CDE11G0611' => 'cde', 'Cfa001683' => 'cfa', 'Cfa001734' => 'cfa', 'Cfa001737' => 'cfa', 'Cfa003751' => 'cfa', 'Cfa012019' => 'cfa', 'Cfa017353' => 'cfa', 'Cfa017732' => 'cfa', 'Cfa022464' => 'cfa', 'Ciclev10012400m.g' => 'ccl', 'Ciclev10021242m.g' => 'ccl', 'Ciclev10021302m.g' => 'ccl', 'Ciclev10021463m.g' => 'ccl', 'Ciclev10032359m.g' => 'ccl', 'CiPaw.01G081000' => 'cil', 'CiPaw.01G262500' => 'cil', 'CiPaw.01G269800' => 'cil', 'CiPaw.02G168400' => 'cil', 'CiPaw.05G119500' => 'cil', 'CiPaw.11G147300' => 'cil', 'ClCG01G003630' => 'cla', 'ClCG05G000510' => 'cla', 'ClCG05G002300' => 'cla', 'ClCG08G007650' => 'cla', 'ClCG10G021250' => 'cla', 'COL.COLO4_06218' => 'col', 'COL.COLO4_12538' => 'col', 'COL.COLO4_14775' => 'col', 'COL.COLO4_23875' => 'col', 'Cpa.g.sc141.16' => 'cpa', 'Cpa.g.sc169.16' => 'cpa', 'Cpa.g.sc244.4' => 'cpa', 'Cpa.g.sc244.5' => 'cpa', 'Cpa.g.sc29.87' => 'cpa', 'Cpa.g.sc53.115' => 'cpa', 'Cre03.g207502' => 'cre', 'Cre06.g277000' => 'cre', 'Cre09.g394050' => 'cre', 'CsaV3_3G007680' => 'csa', 'CsaV3_3G009710' => 'csa', 'CsaV3_3G034790' => 'csa', 'CsaV3_5G003750' => 'csa', 'CsaV3_6G036620' => 'csa', 'CSS0002288' => 'camsi', 'CSS0011250' => 'camsi', 'CSS0021619' => 'camsi', 'CSS0046701' => 'camsi', 'DCAR_006420' => 'dca', 'DCAR_006865' => 'dca', 'DCAR_008558' => 'dca', 'DCAR_028754' => 'dca', 'DCAR_028755' => 'dca', 'Dinv31218' => 'din', 'Dinv32371' => 'din', 'Dinv34250' => 'din', 'Dinv37156' => 'din', 'Dinv43704' => 'din', 'Duzib093G1811' => 'dzi', 'Duzib106G1622' => 'dzi', 'Duzib114G0504' => 'dzi', 'Duzib128G0338' => 'dzi', 'Duzib128G1577' => 'dzi', 'Duzib133G0104' => 'dzi', 'Duzib133G1080' => 'dzi', 'Duzib138G0324' => 'dzi', 'Duzib138G0394' => 'dzi', 'Duzib205G0122' => 'dzi', 'Duzib268G1020' => 'dzi', 'Duzib268G1359' => 'dzi', 'ECA232G3929' => 'eca', 'ECA236G2210' => 'eca', 'ECA236G2287' => 'eca', 'ECA240G4568' => 'eca', 'ECA247G0894' => 'eca', 'EL10Ac1g00200' => 'bvu', 'EL10Ac1g00886' => 'bvu', 'EL10As1g23091' => 'bvu', 'EL10As1g23092' => 'bvu', 'Eucgr.A01284' => 'egr', 'Eucgr.A01285' => 'egr', 'Eucgr.D02456' => 'egr', 'Eucgr.E00018' => 'egr', 'Eucgr.E01439' => 'egr', 'Eucgr.G02859' => 'egr', 'FAN01G0168' => 'fan', 'FAN01G0453' => 'fan', 'FAN01G2761' => 'fan', 'FAN02G1239' => 'fan', 'FAN03G0645' => 'fan', 'FAN03G2707' => 'fan', 'FAN03G2978' => 'fan', 'FAN04G0227' => 'fan', 'FAN06G0091' => 'fan', 'FAN06G1418' => 'fan', 'FAN06G1512' => 'fan', 'FAN06G1986' => 'fan', 'FAN06G2905' => 'fan', 'FAN06G4325' => 'fan', 'FAN08G0033' => 'fan', 'FAN09G0642' => 'fan', 'FAN10G1763' => 'fan', 'FAN10G2026' => 'fan', 'FAN10G2513' => 'fan', 'FAN10G3402' => 'fan', 'FAN10G3564' => 'fan', 'FAN10G3987' => 'fan', 'FAN13G1490' => 'fan', 'FAN14G5857' => 'fan', 'FAN18G1188' => 'fan', 'FvH4_5g00750' => 'fve', 'FvH4_6g13410' => 'fve', 'FvH4_7g11740' => 'fve', 'FvH4_7g17410' => 'fve', 'FvH4_7g18860' => 'fve', 'Glyma.01G099100' => 'gma', 'Glyma.01G142300' => 'gma', 'Glyma.03G025500' => 'gma', 'Glyma.03G069700' => 'gma', 'Glyma.03G260000' => 'gma', 'Glyma.09G269800' => 'gma', 'Glyma.10G208700' => 'gma', 'Glyma.18G220400' => 'gma', 'Glyma.20G182000' => 'gma', 'Gohir.A01G221726' => 'ghi', 'Gohir.A07G134600' => 'ghi', 'Gohir.A07G146000' => 'ghi', 'Gohir.A08G173900' => 'ghi', 'Gohir.A09G194900' => 'ghi', 'Gohir.A10G204100' => 'ghi', 'Gohir.A11G080600' => 'ghi', 'Gohir.A11G327500' => 'ghi', 'Gohir.A12G101800' => 'ghi', 'Gohir.D01G211200' => 'ghi', 'Gohir.D07G139200' => 'ghi', 'Gohir.D07G152100' => 'ghi', 'Gohir.D08G192600' => 'ghi', 'Gohir.D09G189200' => 'ghi', 'Gohir.D10G212000' => 'ghi', 'Gohir.D11G085200' => 'ghi', 'Gohir.D11G346400' => 'ghi', 'Gohir.D12G104800' => 'ghi', 'Gorai.001G151300' => 'gra', 'Gorai.001G174100' => 'gra', 'Gorai.002G257000' => 'gra', 'Gorai.004G202600' => 'gra', 'Gorai.007G090900' => 'gra', 'Gorai.007G376700' => 'gra', 'Gorai.008G114100' => 'gra', 'Gorai.011G237900' => 'gra', 'GSVIVG01005450001' => 'vvi', 'GSVIVG01016232001' => 'vvi', 'GSVIVG01026157001' => 'vvi', 'GSVIVG01027419001' => 'vvi', 'GSVIVG01027631001' => 'vvi', 'GSVIVG01034143001' => 'vvi', 'HanXRQChr03g0093921' => 'han', 'HanXRQChr04g0120001' => 'han', 'HanXRQChr04g0122561' => 'han', 'HanXRQChr09g0246851' => 'han', 'HanXRQChr10g0293311' => 'han', 'HanXRQChr13g0425231' => 'han', 'HanXRQChr16g0532571' => 'han', 'Haze_09050' => 'cav', 'Haze_15715' => 'cav', 'Haze_15716' => 'cav', 'Haze_16803' => 'cav', 'Haze_16850' => 'cav', 'Hma1.2p1_0301F.1_g118655' => 'hma', 'Hma1.2p1_0309F.1_g120590' => 'hma', 'Hma1.2p1_0936F.1_g238900' => 'hma', 'Hma1.2p1_3552F.1_g336740' => 'hma', 'HPP92_003520' => 'vpl', 'HPP92_006628' => 'vpl', 'HPP92_006645' => 'vpl', 'HPP92_014669' => 'vpl', 'HPP92_015077' => 'vpl', 'Hund16742' => 'sun', 'Hund17022' => 'sun', 'Lalb_Chr02g0152131' => 'lal', 'Lalb_Chr05g0225371' => 'lal', 'Lalb_Chr07g0189841' => 'lal', 'Lalb_Chr07g0192961' => 'lal', 'Lalb_Chr12g0208221' => 'lal', 'Lalb_Chr13g0291211' => 'lal', 'Lalb_Chr13g0291781' => 'lal', 'Lalb_Chr18g0044651' => 'lal', 'Lalb_Chr21g0313731' => 'lal', 'Lj1g0022533' => 'lja', 'Lj2A18T50' => 'lonja', 'Lj2A92G93' => 'lonja', 'Lj3A965T73' => 'lonja', 'Lj3g0000673' => 'lja', 'Lj3g0002666' => 'lja', 'Lj4g0016985' => 'lja', 'Lj5g0003625' => 'lja', 'Lj7A529G36' => 'lonja', 'Lj9A569T49' => 'lonja', 'Lj9A604T63' => 'lonja', 'Lsat_1_v5_gn_3_132060' => 'lsa', 'Lsat_1_v5_gn_4_68941' => 'lsa', 'Lsat_1_v5_gn_5_95580' => 'lsa', 'Lsat_1_v5_gn_7_161' => 'lsa', 'Lsat_1_v5_gn_7_7041' => 'lsa', 'Lsat_1_v5_gn_9_33481' => 'lsa', 'Lsat_1_v5_gn_9_68260' => 'lsa', 'Manes.01G073100' => 'mes', 'Manes.01G266300' => 'mes', 'Manes.02G033300' => 'mes', 'Manes.05G017900' => 'mes', 'Manes.05G046100' => 'mes', 'Manes.08G080900' => 'mes', 'Manes.10G049400' => 'mes', 'Mapoly0009s0186' => 'mpo', 'Mapoly0036s0118' => 'mpo', 'Mapoly0101s0046' => 'mpo', 'MBI04_g30218_MAGBIO' => 'mbi', 'MBI04_g35564_MAGBIO' => 'mbi', 'MBI12_g34011_MAGBIO' => 'mbi', 'MBI14_g04655_MAGBIO' => 'mbi', 'MCO07G653' => 'mco', 'MCO10G173' => 'mco', 'MD01G1087100' => 'mdo', 'MD01G1104200' => 'mdo', 'MD02G1205100' => 'mdo', 'MD04G1079200' => 'mdo', 'MD04G1131400' => 'mdo', 'MD07G1121600' => 'mdo', 'MD07G1157300' => 'mdo', 'MD07G1171000' => 'mdo', 'MD12G1144500' => 'mdo', 'Medtr1g094610' => 'mtr', 'Medtr4g021795' => 'mtr', 'Medtr4g023760' => 'mtr', 'Medtr7g118050' => 'mtr', 'MELO3C005582.2' => 'cme', 'MELO3C005989.2' => 'cme', 'MELO3C006192.2' => 'cme', 'MELO3C009248.2' => 'cme', 'MELO3C019817.2' => 'cme', 'Migut.B01625' => 'egut', 'Migut.B01915' => 'egut', 'Migut.F01721' => 'egut', 'Migut.J00314' => 'egut', 'MSTRG.20742' => 'ama', 'MSTRG.8134' => 'ama', 'Nitab4.5_0000096g0010' => 'nta', 'Nitab4.5_0000202g0030' => 'nta', 'Nitab4.5_0000216g0370' => 'nta', 'Nitab4.5_0000457g0230' => 'nta', 'Nitab4.5_0001702g0170' => 'nta', 'Nitab4.5_0003607g0010' => 'nta', 'Nitab4.5_0004917g0020' => 'nta', 'Nitab4.5_0007059g0010' => 'nta', 'Nitab4.5_0007184g0010' => 'nta', 'Nitab4.5_0007346g0020' => 'nta', 'Nn1g00410' => 'nnu', 'Nn1g01252' => 'nnu', 'Nn2g11168' => 'nnu', 'Nn2g13403' => 'nnu', 'Nn2g13760' => 'nnu', 'Nn4g26380' => 'nnu', 'Oeu000806.2' => 'oeu', 'Oeu005788.1' => 'oeu', 'Oeu006900.3' => 'oeu', 'Oeu007797.1' => 'oeu', 'Oeu011932.1' => 'oeu', 'Oeu022739.1' => 'oeu', 'Oeu037918.1' => 'oeu', 'Oeu055490.2' => 'oeu', 'Os01g0844400' => 'osa', 'Os02g0819100' => 'osa', 'Os03g0804300' => 'osa', 'Os05g0458000' => 'osa', 'Os07g0467800' => 'osa', 'Os12g0602200' => 'osa', 'Peaxi162Scf00013g03444' => 'pax', 'Peaxi162Scf00094g01120' => 'pax', 'Peaxi162Scf00191g01211' => 'pax', 'Peaxi162Scf00238g01110' => 'pax', 'Peaxi162Scf00330g00719' => 'pax', 'Peaxi162Scf00627g00018' => 'pax', 'PGR031G2686' => 'pgr', 'PGR042G0809' => 'pgr', 'PGR142G0193' => 'pgr', 'PGSC0003DMG400011066' => 'stu', 'PGSC0003DMG400012041' => 'stu', 'PGSC0003DMG400013678' => 'stu', 'PGSC0003DMG400023477' => 'stu', 'PGSC0003DMG400025956' => 'stu', 'PGSC0003DMG401019151' => 'stu', 'Phvul.006G116400' => 'pvu', 'Phvul.007G097300' => 'pvu', 'Phvul.010G015000' => 'pvu', 'Phvul.010G083900' => 'pvu', 'Potri.001G117100' => 'ptr', 'Potri.002G147300' => 'ptr', 'Potri.003G115600' => 'ptr', 'Potri.006G087400' => 'ptr', 'Potri.010G226100' => 'ptr', 'Potri.014G069200' => 'ptr', 'Potri.014G104000' => 'ptr', 'Potri.016G100200' => 'ptr', 'Pp3c10_20450' => 'ppa', 'Pp3c1_42400' => 'ppa', 'Pp3c3_24390' => 'ppa', 'Pp3c3_2860' => 'ppa', 'PRCOL_00003193' => 'pco', 'Prupe.2G144500' => 'ppe', 'Prupe.2G195700' => 'ppe', 'Prupe.2G209800' => 'ppe', 'Prupe.5G080000' => 'ppe', 'Prupe.6G257900' => 'ppe', 'Psat3g001160' => 'psa', 'Psat6g181880' => 'psa', 'Psat7g233720' => 'psa', 'PSO063G7587' => 'pso', 'PSO339G2145' => 'pso', 'PSO339G3369' => 'pso', 'PSO478G2747' => 'pso', 'PSO513G0140' => 'pso', 'PSO782G1614' => 'pso', 'PSO782G4889' => 'pso', 'PSO782G5485' => 'pso', 'PSO801G0241' => 'pso', 'QL07p048854' => 'qlo', 'QL08p046745' => 'qlo', 'QL08p052606' => 'qlo', 'QL08p053414' => 'qlo', 'QL08p054868' => 'qlo', 'RcHm_v2.0_Chr1g0350251' => 'rch', 'RcHm_v2.0_Chr1g0360851' => 'rch', 'RcHm_v2.0_Chr1g0362791' => 'rch', 'RcHm_v2.0_Chr3g0466281' => 'rch', 'RcHm_v2.0_Chr7g0201481' => 'rch', 'Rhsim01G0148600' => 'rsi', 'Rhsim05G0194400' => 'rsi', 'Rhsim07G0000700' => 'rsi', 'Rhsim07G0000800' => 'rsi', 'Rhsim07G0027900' => 'rsi', 'Rhsim09G0149500' => 'rsi', 'RhsimUnG0186900' => 'rsi', 'Sabra01G0089900' => 'sbr', 'Sabra02G0114700' => 'sbr', 'Sabra02G0116300' => 'sbr', 'Sabra03G0080100' => 'sbr', 'Sabra08G0024300' => 'sbr', 'Sabra10G0174300' => 'sbr', 'Sabra14G0048900' => 'sbr', 'Sabra14G0076500' => 'sbr', 'SalBow5G2513' => 'sbo', 'Sc01g0002300' => 'sci', 'Sc01g0004450' => 'sci', 'Sc06g0001680' => 'sci', 'Sc23g0003580' => 'sci', 'Sed0000913' => 'sed', 'Sed0001655' => 'sed', 'Sed0007745' => 'sed', 'Sed0010951' => 'sed', 'Sed0017599' => 'sed', 'Sed0021405' => 'sed', 'Sed0022810' => 'sed', 'SEGI_07099' => 'sgi', 'SEGI_11931' => 'sgi', 'SEGI_13187' => 'sgi', 'SEGI_29958' => 'sgi', 'SEGI_36351' => 'sgi', 'SGA_v2.0_scaffold126G33770' => 'sas', 'SGA_v2.0_scaffold153G37003' => 'sas', 'SGA_v2.0_scaffold2G01359' => 'sas', 'SGA_v2.0_scaffold5G03064' => 'sas', 'SGA_v2.0_scaffold95G28903' => 'sas', 'SHI12701' => 'shi', 'SHI26410' => 'shi', 'SHI38997' => 'shi', 'SHI53759' => 'shi', 'SHI53886' => 'shi', 'SHI54714' => 'shi', 'SMO011G0041' => 'smo', 'SMO146G0251' => 'smo', 'SMO160G0004' => 'smo', 'SMO174G0057' => 'smo', 'SMO244G0089' => 'smo', 'SMO296G0011' => 'smo', 'Solyc01g091280.3' => 'sly', 'Solyc05g047610.3' => 'sly', 'Solyc05g047640.3' => 'sly', 'Solyc05g055630.3' => 'sly', 'Solyc10g018160.2' => 'sly', 'Solyc10g084820.2' => 'sly', 'Solyc10g086565.2' => 'sly', 'Sopen01g037030' => 'spe', 'Sopen05g027920' => 'spe', 'Sopen05g034070' => 'spe', 'Sopen10g007260' => 'spe', 'Sopen10g034260' => 'spe', 'Sopen10g035950' => 'spe', 'Sp3g07710' => 'spa', 'Sp4g27420' => 'spa', 'Sp5g02450' => 'spa', 'Sp6g01280' => 'spa', 'Sp6g38480' => 'spa', 'Sp7g20780' => 'spa', 'TAR374G1413' => 'tar', 'TAR623G1777' => 'tar', 'TAR629G2370' => 'tar', 'TAR633G1759' => 'tar', 'TAR636G3387' => 'tar', 'THA.LOC104802447' => 'tha', 'THA.LOC104813916' => 'tha', 'THA.LOC104816423' => 'tha', 'THA.LOC104817246' => 'tha', 'THA.LOC104825895' => 'tha', 'Thecc.01G335200' => 'tca', 'Thecc.01G377400' => 'tca', 'Thecc.03G262200' => 'tca', 'Thecc.05G036800' => 'tca', 'Thecc.10G080500' => 'tca', 'Thecc.10G080800' => 'tca', 'Thhalv10001560m.g' => 'esa', 'Thhalv10006120m.g' => 'esa', 'Thhalv10014375m.g' => 'esa', 'Thhalv10021264m.g' => 'esa', 'Thhalv10028856m.g' => 'esa', 'TPR.G1914' => 'tpr', 'TPR.G4757' => 'tpr', 'TPR.G5595' => 'tpr', 'TWI14G0952' => 'twi', 'TWI14G1307' => 'twi', 'TWI38G2143' => 'twi', 'TWI59G0826' => 'twi', 'TWI77G0527' => 'twi', 'TWI81G0150' => 'twi', 'unitig_21.g21018' => 'ugi', 'unitig_26.g9725' => 'ugi', 'unitig_744.g24653' => 'ugi', 'unitig_749.g13778' => 'ugi', 'unitig_899.g15035' => 'ugi', 'vmacro04296' => 'vma', 'vmacro04852' => 'vma', 'vmacro13404' => 'vma', 'vmacro20169' => 'vma', 'vmacro21014' => 'vma', 'VMungo0331G0237' => 'vmu', 'VMungo0331G0706' => 'vmu', 'VMungo0331G1361' => 'vmu', 'VMungo0331G1489' => 'vmu', 'VMungo0540G1037' => 'vmu', 'VMungo0720G2487' => 'vmu', 'VMungo0720G2721' => 'vmu', 'Zm00001eb086860' => 'zma', 'Zm00001eb104760' => 'zma', 'Zm00001eb148220' => 'zma', 'Zm00001eb259030' => 'zma', 'Zm00001eb289590' => 'zma', 'Zm00001eb420150' => 'zma' ), 'gf_id' => 'HOM05D000968', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000968' ), 'data_identifier' => 'HOM05D000968', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000968', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p31690' => 'bna', 'A03p36040' => 'bna', 'A03p53730' => 'bna', 'A04p01410' => 'bna', 'A05p05420' => 'bna', 'A05p39630' => 'bna', 'A05p39640' => 'bna', 'A09p00970' => 'bna', 'A09p53060' => 'bna', 'A10p31890' => 'bna', 'Aa31LG10G15040' => 'aar', 'Aa31LG1G21090' => 'aar', 'Aa31LG1G26900' => 'aar', 'Aa31LG3G1820' => 'aar', 'Aa31LG5G1100' => 'aar', 'Aa31LG6G4740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2265' => 'aag', 'Actinidia07998' => 'ach', 'Actinidia11266' => 'ach', 'Actinidia12682' => 'ach', 'Actinidia26479' => 'ach', 'Actinidia31406' => 'ach', 'Actinidia32437' => 'ach', 'Actinidia38862' => 'ach', 'Ah.05g174230' => 'amhyb', 'Ah.05g179070' => 'amhyb', 'Ah.05g179090' => 'amhyb', 'Ah.12g059950' => 'amhyb', 'AL3G20480' => 'aly', 'AL4G44520' => 'aly', 'AL5G43110' => 'aly', 'AL6G13890' => 'aly', 'AL6G52620' => 'aly', 'AL7G30830' => 'aly', 'Aqoxy1G00899' => 'aox', 'Aqoxy5G04333' => 'aox', 'Aqoxy7G00641' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3IZ0NN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4EF6AW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W9P8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79GA3M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C43NQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFCU6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G95YVJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCHK29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LU1UG8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX91RN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGB4B1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8DA0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9H7JI' => 'arhy', 'AT3G09320' => 'ath', 'AT3G60800' => 'ath', 'AT4G00840' => 'ath', 'AT4G22750' => 'ath', 'AT5G04270' => 'ath', 'ATR0090G003' => 'atr', 'ATR0559G349' => 'atr', 'ATR0680G261' => 'atr', 'ATR0810G048' => 'atr', 'Atru.chr12.831' => 'acertr', 'Atru.chr5.303' => 'acertr', 'Atru.chr5.748' => 'acertr', 'Atru.chr8.1999' => 'acertr', 'Atru.chr9.1436' => 'acertr', 'AUR62004211' => 'cqu', 'AUR62004548' => 'cqu', 'AUR62013637' => 'cqu', 'AUR62022662' => 'cqu', 'AUR62025777' => 'cqu', 'AUR62042386' => 'cqu', 'BcaB01g02310' => 'bca', 'BcaB01g06062' => 'bca', 'BcaB02g08975' => 'bca', 'BcaB02g08980' => 'bca', 'BcaC01g04228' => 'bca', 'BcaC01g06830' => 'bca', 'BcaC02g10186' => 'bca', 'BcaC02g12214' => 'bca', 'BcaC04g24101' => 'bca', 'BcaC05g29520' => 'bca', 'BcaC05g29661' => 'bca', 'BcaC06g32130' => 'bca', 'BcaC06g32131' => 'bca', 'BcaC07g40601' => 'bca', 'BcaC07g42641' => 'bca', 'BcaNung01038' => 'bca', 'BcaNung01676' => 'bca', 'BcaNung02480' => 'bca', 'BcaNung07376' => 'bca', 'BolC3t16146H' => 'bol', 'BolC3t16637H' => 'bol', 'BolC4t22257H' => 'bol', 'BolC4t24728H' => 'bol', 'BolC5t34517H' => 'bol', 'BolC7t45703H' => 'bol', 'BolC8t51166H' => 'bol', 'BolC9t53038H' => 'bol', 'BolC9t60000H' => 'bol', 'BraA01t01345Z' => 'bra', 'BraA01t01346Z' => 'bra', 'BraA01t01348Z' => 'bra', 'BraA03t12347Z' => 'bra', 'BraA03t12775Z' => 'bra', 'BraA03t14439Z' => 'bra', 'BraA04t15860Z' => 'bra', 'BraA05t19511Z' => 'bra', 'BraA05t22746Z' => 'bra', 'BraA09t35767Z' => 'bra', 'BraA09t40732Z' => 'bra', 'BraA10t45233Z' => 'bra', 'C03p38720' => 'bna', 'C03p43680' => 'bna', 'C04p06350' => 'bna', 'C04p31800' => 'bna', 'C05p58680' => 'bna', 'C07p52110' => 'bna', 'C08p35760' => 'bna', 'C09p01050' => 'bna', 'C09p72600' => 'bna', 'CAN.G106.2' => 'can', 'CAN.G1482.1' => 'can', 'CAN.G324.12' => 'can', 'CAN.G388.20' => 'can', 'CAN.G412.7' => 'can', 'CAN.G694.32' => 'can', 'CAN.G92.12' => 'can', 'CANSAT11G2353' => 'cansat', 'CANSAT21G1398' => 'cansat', 'CANSAT56G2456' => 'cansat', 'CANSAT56G3031' => 'cansat', 'CANSAT56G4539' => 'cansat', 'CARHR083680' => 'chi', 'CARHR171190' => 'chi', 'CARHR209010' => 'chi', 'CARHR229680' => 'chi', 'CARHR249490' => 'chi', 'Carub.0003s0844' => 'cru', 'Carub.0005s2755' => 'cru', 'Carub.0006s0322' => 'cru', 'Carub.0006s3586' => 'cru', 'Carub.0007s1855' => 'cru', 'Ca_07808_v3' => 'car', 'Ca_09535_v3' => 'car', 'Ca_10548_v3' => 'car', 'Ca_19913_v3' => 'car', 'Ca_19916_v3' => 'car', 'Ca_19975_v3' => 'car', 'CBR_g22876' => 'cbr', 'CBR_g22879' => 'cbr', 'CBR_g38491' => 'cbr', 'CBR_g54185' => 'cbr', 'CBR_g54190' => 'cbr', 'Cc02_g11020' => 'ccan', 'Cc02_g23920' => 'ccan', 'Cc02_g39860' => 'ccan', 'Cc02_g39870' => 'ccan', 'Cc03_g06760' => 'ccan', 'Cc06_g02450' => 'ccan', 'Cc09_g09450' => 'ccan', 'CDE02G1959' => 'cde', 'CDE04G0600' => 'cde', 'CDE07G1996' => 'cde', 'CDE07G2078' => 'cde', 'CDE11G0611' => 'cde', 'Cfa001683' => 'cfa', 'Cfa001734' => 'cfa', 'Cfa001737' => 'cfa', 'Cfa003751' => 'cfa', 'Cfa012019' => 'cfa', 'Cfa017353' => 'cfa', 'Cfa017732' => 'cfa', 'Cfa022464' => 'cfa', 'Ciclev10012400m.g' => 'ccl', 'Ciclev10021242m.g' => 'ccl', 'Ciclev10021302m.g' => 'ccl', 'Ciclev10021463m.g' => 'ccl', 'Ciclev10032359m.g' => 'ccl', 'CiPaw.01G081000' => 'cil', 'CiPaw.01G262500' => 'cil', 'CiPaw.01G269800' => 'cil', 'CiPaw.02G168400' => 'cil', 'CiPaw.05G119500' => 'cil', 'CiPaw.11G147300' => 'cil', 'ClCG01G003630' => 'cla', 'ClCG05G000510' => 'cla', 'ClCG05G002300' => 'cla', 'ClCG08G007650' => 'cla', 'ClCG10G021250' => 'cla', 'COL.COLO4_06218' => 'col', 'COL.COLO4_12538' => 'col', 'COL.COLO4_14775' => 'col', 'COL.COLO4_23875' => 'col', 'Cpa.g.sc141.16' => 'cpa', 'Cpa.g.sc169.16' => 'cpa', 'Cpa.g.sc244.4' => 'cpa', 'Cpa.g.sc244.5' => 'cpa', 'Cpa.g.sc29.87' => 'cpa', 'Cpa.g.sc53.115' => 'cpa', 'Cre03.g207502' => 'cre', 'Cre06.g277000' => 'cre', 'Cre09.g394050' => 'cre', 'CsaV3_3G007680' => 'csa', 'CsaV3_3G009710' => 'csa', 'CsaV3_3G034790' => 'csa', 'CsaV3_5G003750' => 'csa', 'CsaV3_6G036620' => 'csa', 'CSS0002288' => 'camsi', 'CSS0011250' => 'camsi', 'CSS0021619' => 'camsi', 'CSS0046701' => 'camsi', 'DCAR_006420' => 'dca', 'DCAR_006865' => 'dca', 'DCAR_008558' => 'dca', 'DCAR_028754' => 'dca', 'DCAR_028755' => 'dca', 'Dinv31218' => 'din', 'Dinv32371' => 'din', 'Dinv34250' => 'din', 'Dinv37156' => 'din', 'Dinv43704' => 'din', 'Duzib093G1811' => 'dzi', 'Duzib106G1622' => 'dzi', 'Duzib114G0504' => 'dzi', 'Duzib128G0338' => 'dzi', 'Duzib128G1577' => 'dzi', 'Duzib133G0104' => 'dzi', 'Duzib133G1080' => 'dzi', 'Duzib138G0324' => 'dzi', 'Duzib138G0394' => 'dzi', 'Duzib205G0122' => 'dzi', 'Duzib268G1020' => 'dzi', 'Duzib268G1359' => 'dzi', 'ECA232G3929' => 'eca', 'ECA236G2210' => 'eca', 'ECA236G2287' => 'eca', 'ECA240G4568' => 'eca', 'ECA247G0894' => 'eca', 'EL10Ac1g00200' => 'bvu', 'EL10Ac1g00886' => 'bvu', 'EL10As1g23091' => 'bvu', 'EL10As1g23092' => 'bvu', 'Eucgr.A01284' => 'egr', 'Eucgr.A01285' => 'egr', 'Eucgr.D02456' => 'egr', 'Eucgr.E00018' => 'egr', 'Eucgr.E01439' => 'egr', 'Eucgr.G02859' => 'egr', 'FAN01G0168' => 'fan', 'FAN01G0453' => 'fan', 'FAN01G2761' => 'fan', 'FAN02G1239' => 'fan', 'FAN03G0645' => 'fan', 'FAN03G2707' => 'fan', 'FAN03G2978' => 'fan', 'FAN04G0227' => 'fan', 'FAN06G0091' => 'fan', 'FAN06G1418' => 'fan', 'FAN06G1512' => 'fan', 'FAN06G1986' => 'fan', 'FAN06G2905' => 'fan', 'FAN06G4325' => 'fan', 'FAN08G0033' => 'fan', 'FAN09G0642' => 'fan', 'FAN10G1763' => 'fan', 'FAN10G2026' => 'fan', 'FAN10G2513' => 'fan', 'FAN10G3402' => 'fan', 'FAN10G3564' => 'fan', 'FAN10G3987' => 'fan', 'FAN13G1490' => 'fan', 'FAN14G5857' => 'fan', 'FAN18G1188' => 'fan', 'FvH4_5g00750' => 'fve', 'FvH4_6g13410' => 'fve', 'FvH4_7g11740' => 'fve', 'FvH4_7g17410' => 'fve', 'FvH4_7g18860' => 'fve', 'Glyma.01G099100' => 'gma', 'Glyma.01G142300' => 'gma', 'Glyma.03G025500' => 'gma', 'Glyma.03G069700' => 'gma', 'Glyma.03G260000' => 'gma', 'Glyma.09G269800' => 'gma', 'Glyma.10G208700' => 'gma', 'Glyma.18G220400' => 'gma', 'Glyma.20G182000' => 'gma', 'Gohir.A01G221726' => 'ghi', 'Gohir.A07G134600' => 'ghi', 'Gohir.A07G146000' => 'ghi', 'Gohir.A08G173900' => 'ghi', 'Gohir.A09G194900' => 'ghi', 'Gohir.A10G204100' => 'ghi', 'Gohir.A11G080600' => 'ghi', 'Gohir.A11G327500' => 'ghi', 'Gohir.A12G101800' => 'ghi', 'Gohir.D01G211200' => 'ghi', 'Gohir.D07G139200' => 'ghi', 'Gohir.D07G152100' => 'ghi', 'Gohir.D08G192600' => 'ghi', 'Gohir.D09G189200' => 'ghi', 'Gohir.D10G212000' => 'ghi', 'Gohir.D11G085200' => 'ghi', 'Gohir.D11G346400' => 'ghi', 'Gohir.D12G104800' => 'ghi', 'Gorai.001G151300' => 'gra', 'Gorai.001G174100' => 'gra', 'Gorai.002G257000' => 'gra', 'Gorai.004G202600' => 'gra', 'Gorai.007G090900' => 'gra', 'Gorai.007G376700' => 'gra', 'Gorai.008G114100' => 'gra', 'Gorai.011G237900' => 'gra', 'GSVIVG01005450001' => 'vvi', 'GSVIVG01016232001' => 'vvi', 'GSVIVG01026157001' => 'vvi', 'GSVIVG01027419001' => 'vvi', 'GSVIVG01027631001' => 'vvi', 'GSVIVG01034143001' => 'vvi', 'HanXRQChr03g0093921' => 'han', 'HanXRQChr04g0120001' => 'han', 'HanXRQChr04g0122561' => 'han', 'HanXRQChr09g0246851' => 'han', 'HanXRQChr10g0293311' => 'han', 'HanXRQChr13g0425231' => 'han', 'HanXRQChr16g0532571' => 'han', 'Haze_09050' => 'cav', 'Haze_15715' => 'cav', 'Haze_15716' => 'cav', 'Haze_16803' => 'cav', 'Haze_16850' => 'cav', 'Hma1.2p1_0301F.1_g118655' => 'hma', 'Hma1.2p1_0309F.1_g120590' => 'hma', 'Hma1.2p1_0936F.1_g238900' => 'hma', 'Hma1.2p1_3552F.1_g336740' => 'hma', 'HPP92_003520' => 'vpl', 'HPP92_006628' => 'vpl', 'HPP92_006645' => 'vpl', 'HPP92_014669' => 'vpl', 'HPP92_015077' => 'vpl', 'Hund16742' => 'sun', 'Hund17022' => 'sun', 'Lalb_Chr02g0152131' => 'lal', 'Lalb_Chr05g0225371' => 'lal', 'Lalb_Chr07g0189841' => 'lal', 'Lalb_Chr07g0192961' => 'lal', 'Lalb_Chr12g0208221' => 'lal', 'Lalb_Chr13g0291211' => 'lal', 'Lalb_Chr13g0291781' => 'lal', 'Lalb_Chr18g0044651' => 'lal', 'Lalb_Chr21g0313731' => 'lal', 'Lj1g0022533' => 'lja', 'Lj2A18T50' => 'lonja', 'Lj2A92G93' => 'lonja', 'Lj3A965T73' => 'lonja', 'Lj3g0000673' => 'lja', 'Lj3g0002666' => 'lja', 'Lj4g0016985' => 'lja', 'Lj5g0003625' => 'lja', 'Lj7A529G36' => 'lonja', 'Lj9A569T49' => 'lonja', 'Lj9A604T63' => 'lonja', 'Lsat_1_v5_gn_3_132060' => 'lsa', 'Lsat_1_v5_gn_4_68941' => 'lsa', 'Lsat_1_v5_gn_5_95580' => 'lsa', 'Lsat_1_v5_gn_7_161' => 'lsa', 'Lsat_1_v5_gn_7_7041' => 'lsa', 'Lsat_1_v5_gn_9_33481' => 'lsa', 'Lsat_1_v5_gn_9_68260' => 'lsa', 'Manes.01G073100' => 'mes', 'Manes.01G266300' => 'mes', 'Manes.02G033300' => 'mes', 'Manes.05G017900' => 'mes', 'Manes.05G046100' => 'mes', 'Manes.08G080900' => 'mes', 'Manes.10G049400' => 'mes', 'Mapoly0009s0186' => 'mpo', 'Mapoly0036s0118' => 'mpo', 'Mapoly0101s0046' => 'mpo', 'MBI04_g30218_MAGBIO' => 'mbi', 'MBI04_g35564_MAGBIO' => 'mbi', 'MBI12_g34011_MAGBIO' => 'mbi', 'MBI14_g04655_MAGBIO' => 'mbi', 'MCO07G653' => 'mco', 'MCO10G173' => 'mco', 'MD01G1087100' => 'mdo', 'MD01G1104200' => 'mdo', 'MD02G1205100' => 'mdo', 'MD04G1079200' => 'mdo', 'MD04G1131400' => 'mdo', 'MD07G1121600' => 'mdo', 'MD07G1157300' => 'mdo', 'MD07G1171000' => 'mdo', 'MD12G1144500' => 'mdo', 'Medtr1g094610' => 'mtr', 'Medtr4g021795' => 'mtr', 'Medtr4g023760' => 'mtr', 'Medtr7g118050' => 'mtr', 'MELO3C005582.2' => 'cme', 'MELO3C005989.2' => 'cme', 'MELO3C006192.2' => 'cme', 'MELO3C009248.2' => 'cme', 'MELO3C019817.2' => 'cme', 'Migut.B01625' => 'egut', 'Migut.B01915' => 'egut', 'Migut.F01721' => 'egut', 'Migut.J00314' => 'egut', 'MSTRG.20742' => 'ama', 'MSTRG.8134' => 'ama', 'Nitab4.5_0000096g0010' => 'nta', 'Nitab4.5_0000202g0030' => 'nta', 'Nitab4.5_0000216g0370' => 'nta', 'Nitab4.5_0000457g0230' => 'nta', 'Nitab4.5_0001702g0170' => 'nta', 'Nitab4.5_0003607g0010' => 'nta', 'Nitab4.5_0004917g0020' => 'nta', 'Nitab4.5_0007059g0010' => 'nta', 'Nitab4.5_0007184g0010' => 'nta', 'Nitab4.5_0007346g0020' => 'nta', 'Nn1g00410' => 'nnu', 'Nn1g01252' => 'nnu', 'Nn2g11168' => 'nnu', 'Nn2g13403' => 'nnu', 'Nn2g13760' => 'nnu', 'Nn4g26380' => 'nnu', 'Oeu000806.2' => 'oeu', 'Oeu005788.1' => 'oeu', 'Oeu006900.3' => 'oeu', 'Oeu007797.1' => 'oeu', 'Oeu011932.1' => 'oeu', 'Oeu022739.1' => 'oeu', 'Oeu037918.1' => 'oeu', 'Oeu055490.2' => 'oeu', 'Os01g0844400' => 'osa', 'Os02g0819100' => 'osa', 'Os03g0804300' => 'osa', 'Os05g0458000' => 'osa', 'Os07g0467800' => 'osa', 'Os12g0602200' => 'osa', 'Peaxi162Scf00013g03444' => 'pax', 'Peaxi162Scf00094g01120' => 'pax', 'Peaxi162Scf00191g01211' => 'pax', 'Peaxi162Scf00238g01110' => 'pax', 'Peaxi162Scf00330g00719' => 'pax', 'Peaxi162Scf00627g00018' => 'pax', 'PGR031G2686' => 'pgr', 'PGR042G0809' => 'pgr', 'PGR142G0193' => 'pgr', 'PGSC0003DMG400011066' => 'stu', 'PGSC0003DMG400012041' => 'stu', 'PGSC0003DMG400013678' => 'stu', 'PGSC0003DMG400023477' => 'stu', 'PGSC0003DMG400025956' => 'stu', 'PGSC0003DMG401019151' => 'stu', 'Phvul.006G116400' => 'pvu', 'Phvul.007G097300' => 'pvu', 'Phvul.010G015000' => 'pvu', 'Phvul.010G083900' => 'pvu', 'Potri.001G117100' => 'ptr', 'Potri.002G147300' => 'ptr', 'Potri.003G115600' => 'ptr', 'Potri.006G087400' => 'ptr', 'Potri.010G226100' => 'ptr', 'Potri.014G069200' => 'ptr', 'Potri.014G104000' => 'ptr', 'Potri.016G100200' => 'ptr', 'Pp3c10_20450' => 'ppa', 'Pp3c1_42400' => 'ppa', 'Pp3c3_24390' => 'ppa', 'Pp3c3_2860' => 'ppa', 'PRCOL_00003193' => 'pco', 'Prupe.2G144500' => 'ppe', 'Prupe.2G195700' => 'ppe', 'Prupe.2G209800' => 'ppe', 'Prupe.5G080000' => 'ppe', 'Prupe.6G257900' => 'ppe', 'Psat3g001160' => 'psa', 'Psat6g181880' => 'psa', 'Psat7g233720' => 'psa', 'PSO063G7587' => 'pso', 'PSO339G2145' => 'pso', 'PSO339G3369' => 'pso', 'PSO478G2747' => 'pso', 'PSO513G0140' => 'pso', 'PSO782G1614' => 'pso', 'PSO782G4889' => 'pso', 'PSO782G5485' => 'pso', 'PSO801G0241' => 'pso', 'QL07p048854' => 'qlo', 'QL08p046745' => 'qlo', 'QL08p052606' => 'qlo', 'QL08p053414' => 'qlo', 'QL08p054868' => 'qlo', 'RcHm_v2.0_Chr1g0350251' => 'rch', 'RcHm_v2.0_Chr1g0360851' => 'rch', 'RcHm_v2.0_Chr1g0362791' => 'rch', 'RcHm_v2.0_Chr3g0466281' => 'rch', 'RcHm_v2.0_Chr7g0201481' => 'rch', 'Rhsim01G0148600' => 'rsi', 'Rhsim05G0194400' => 'rsi', 'Rhsim07G0000700' => 'rsi', 'Rhsim07G0000800' => 'rsi', 'Rhsim07G0027900' => 'rsi', 'Rhsim09G0149500' => 'rsi', 'RhsimUnG0186900' => 'rsi', 'Sabra01G0089900' => 'sbr', 'Sabra02G0114700' => 'sbr', 'Sabra02G0116300' => 'sbr', 'Sabra03G0080100' => 'sbr', 'Sabra08G0024300' => 'sbr', 'Sabra10G0174300' => 'sbr', 'Sabra14G0048900' => 'sbr', 'Sabra14G0076500' => 'sbr', 'SalBow5G2513' => 'sbo', 'Sc01g0002300' => 'sci', 'Sc01g0004450' => 'sci', 'Sc06g0001680' => 'sci', 'Sc23g0003580' => 'sci', 'Sed0000913' => 'sed', 'Sed0001655' => 'sed', 'Sed0007745' => 'sed', 'Sed0010951' => 'sed', 'Sed0017599' => 'sed', 'Sed0021405' => 'sed', 'Sed0022810' => 'sed', 'SEGI_07099' => 'sgi', 'SEGI_11931' => 'sgi', 'SEGI_13187' => 'sgi', 'SEGI_29958' => 'sgi', 'SEGI_36351' => 'sgi', 'SGA_v2.0_scaffold126G33770' => 'sas', 'SGA_v2.0_scaffold153G37003' => 'sas', 'SGA_v2.0_scaffold2G01359' => 'sas', 'SGA_v2.0_scaffold5G03064' => 'sas', 'SGA_v2.0_scaffold95G28903' => 'sas', 'SHI12701' => 'shi', 'SHI26410' => 'shi', 'SHI38997' => 'shi', 'SHI53759' => 'shi', 'SHI53886' => 'shi', 'SHI54714' => 'shi', 'SMO011G0041' => 'smo', 'SMO146G0251' => 'smo', 'SMO160G0004' => 'smo', 'SMO174G0057' => 'smo', 'SMO244G0089' => 'smo', 'SMO296G0011' => 'smo', 'Solyc01g091280.3' => 'sly', 'Solyc05g047610.3' => 'sly', 'Solyc05g047640.3' => 'sly', 'Solyc05g055630.3' => 'sly', 'Solyc10g018160.2' => 'sly', 'Solyc10g084820.2' => 'sly', 'Solyc10g086565.2' => 'sly', 'Sopen01g037030' => 'spe', 'Sopen05g027920' => 'spe', 'Sopen05g034070' => 'spe', 'Sopen10g007260' => 'spe', 'Sopen10g034260' => 'spe', 'Sopen10g035950' => 'spe', 'Sp3g07710' => 'spa', 'Sp4g27420' => 'spa', 'Sp5g02450' => 'spa', 'Sp6g01280' => 'spa', 'Sp6g38480' => 'spa', 'Sp7g20780' => 'spa', 'TAR374G1413' => 'tar', 'TAR623G1777' => 'tar', 'TAR629G2370' => 'tar', 'TAR633G1759' => 'tar', 'TAR636G3387' => 'tar', 'THA.LOC104802447' => 'tha', 'THA.LOC104813916' => 'tha', 'THA.LOC104816423' => 'tha', 'THA.LOC104817246' => 'tha', 'THA.LOC104825895' => 'tha', 'Thecc.01G335200' => 'tca', 'Thecc.01G377400' => 'tca', 'Thecc.03G262200' => 'tca', 'Thecc.05G036800' => 'tca', 'Thecc.10G080500' => 'tca', 'Thecc.10G080800' => 'tca', 'Thhalv10001560m.g' => 'esa', 'Thhalv10006120m.g' => 'esa', 'Thhalv10014375m.g' => 'esa', 'Thhalv10021264m.g' => 'esa', 'Thhalv10028856m.g' => 'esa', 'TPR.G1914' => 'tpr', 'TPR.G4757' => 'tpr', 'TPR.G5595' => 'tpr', 'TWI14G0952' => 'twi', 'TWI14G1307' => 'twi', 'TWI38G2143' => 'twi', 'TWI59G0826' => 'twi', 'TWI77G0527' => 'twi', 'TWI81G0150' => 'twi', 'unitig_21.g21018' => 'ugi', 'unitig_26.g9725' => 'ugi', 'unitig_744.g24653' => 'ugi', 'unitig_749.g13778' => 'ugi', 'unitig_899.g15035' => 'ugi', 'vmacro04296' => 'vma', 'vmacro04852' => 'vma', 'vmacro13404' => 'vma', 'vmacro20169' => 'vma', 'vmacro21014' => 'vma', 'VMungo0331G0237' => 'vmu', 'VMungo0331G0706' => 'vmu', 'VMungo0331G1361' => 'vmu', 'VMungo0331G1489' => 'vmu', 'VMungo0540G1037' => 'vmu', 'VMungo0720G2487' => 'vmu', 'VMungo0720G2721' => 'vmu', 'Zm00001eb086860' => 'zma', 'Zm00001eb104760' => 'zma', 'Zm00001eb148220' => 'zma', 'Zm00001eb259030' => 'zma', 'Zm00001eb289590' => 'zma', 'Zm00001eb420150' => 'zma' ) $gf_id = 'HOM05D000968' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000968' ) $data_identifier = 'HOM05D000968' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 19, 'bol' => (int) 9, 'bra' => (int) 12, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 5, 'ccan' => (int) 7, 'cde' => (int) 5, 'cfa' => (int) 8, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 4, 'dca' => (int) 5, 'din' => (int) 5, 'dzi' => (int) 12, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 25, 'fve' => (int) 5, 'gma' => (int) 9, 'ghi' => (int) 18, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 7, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 5, 'sun' => (int) 2, 'lal' => (int) 9, 'lja' => (int) 5, 'lonja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 9, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 2, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 3, 'stu' => (int) 6, 'pvu' => (int) 4, 'ptr' => (int) 8, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 3, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 1, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 5, 'sas' => (int) 5, 'shi' => (int) 6, 'smo' => (int) 6, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 3, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420150' $species_info = array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ) $local_species = 'camsi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000968', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p31690' => 'bna', 'A03p36040' => 'bna', 'A03p53730' => 'bna', 'A04p01410' => 'bna', 'A05p05420' => 'bna', 'A05p39630' => 'bna', 'A05p39640' => 'bna', 'A09p00970' => 'bna', 'A09p53060' => 'bna', 'A10p31890' => 'bna', 'Aa31LG10G15040' => 'aar', 'Aa31LG1G21090' => 'aar', 'Aa31LG1G26900' => 'aar', 'Aa31LG3G1820' => 'aar', 'Aa31LG5G1100' => 'aar', 'Aa31LG6G4740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2265' => 'aag', 'Actinidia07998' => 'ach', 'Actinidia11266' => 'ach', 'Actinidia12682' => 'ach', 'Actinidia26479' => 'ach', 'Actinidia31406' => 'ach', 'Actinidia32437' => 'ach', 'Actinidia38862' => 'ach', 'Ah.05g174230' => 'amhyb', 'Ah.05g179070' => 'amhyb', 'Ah.05g179090' => 'amhyb', 'Ah.12g059950' => 'amhyb', 'AL3G20480' => 'aly', 'AL4G44520' => 'aly', 'AL5G43110' => 'aly', 'AL6G13890' => 'aly', 'AL6G52620' => 'aly', 'AL7G30830' => 'aly', 'Aqoxy1G00899' => 'aox', 'Aqoxy5G04333' => 'aox', 'Aqoxy7G00641' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3IZ0NN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4EF6AW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W9P8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79GA3M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C43NQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFCU6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G95YVJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCHK29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LU1UG8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX91RN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGB4B1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8DA0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9H7JI' => 'arhy', 'AT3G09320' => 'ath', 'AT3G60800' => 'ath', 'AT4G00840' => 'ath', 'AT4G22750' => 'ath', 'AT5G04270' => 'ath', 'ATR0090G003' => 'atr', 'ATR0559G349' => 'atr', 'ATR0680G261' => 'atr', 'ATR0810G048' => 'atr', 'Atru.chr12.831' => 'acertr', 'Atru.chr5.303' => 'acertr', 'Atru.chr5.748' => 'acertr', 'Atru.chr8.1999' => 'acertr', 'Atru.chr9.1436' => 'acertr', 'AUR62004211' => 'cqu', 'AUR62004548' => 'cqu', 'AUR62013637' => 'cqu', 'AUR62022662' => 'cqu', 'AUR62025777' => 'cqu', 'AUR62042386' => 'cqu', 'BcaB01g02310' => 'bca', 'BcaB01g06062' => 'bca', 'BcaB02g08975' => 'bca', 'BcaB02g08980' => 'bca', 'BcaC01g04228' => 'bca', 'BcaC01g06830' => 'bca', 'BcaC02g10186' => 'bca', 'BcaC02g12214' => 'bca', 'BcaC04g24101' => 'bca', 'BcaC05g29520' => 'bca', 'BcaC05g29661' => 'bca', 'BcaC06g32130' => 'bca', 'BcaC06g32131' => 'bca', 'BcaC07g40601' => 'bca', 'BcaC07g42641' => 'bca', 'BcaNung01038' => 'bca', 'BcaNung01676' => 'bca', 'BcaNung02480' => 'bca', 'BcaNung07376' => 'bca', 'BolC3t16146H' => 'bol', 'BolC3t16637H' => 'bol', 'BolC4t22257H' => 'bol', 'BolC4t24728H' => 'bol', 'BolC5t34517H' => 'bol', 'BolC7t45703H' => 'bol', 'BolC8t51166H' => 'bol', 'BolC9t53038H' => 'bol', 'BolC9t60000H' => 'bol', 'BraA01t01345Z' => 'bra', 'BraA01t01346Z' => 'bra', 'BraA01t01348Z' => 'bra', 'BraA03t12347Z' => 'bra', 'BraA03t12775Z' => 'bra', 'BraA03t14439Z' => 'bra', 'BraA04t15860Z' => 'bra', 'BraA05t19511Z' => 'bra', 'BraA05t22746Z' => 'bra', 'BraA09t35767Z' => 'bra', 'BraA09t40732Z' => 'bra', 'BraA10t45233Z' => 'bra', 'C03p38720' => 'bna', 'C03p43680' => 'bna', 'C04p06350' => 'bna', 'C04p31800' => 'bna', 'C05p58680' => 'bna', 'C07p52110' => 'bna', 'C08p35760' => 'bna', 'C09p01050' => 'bna', 'C09p72600' => 'bna', 'CAN.G106.2' => 'can', 'CAN.G1482.1' => 'can', 'CAN.G324.12' => 'can', 'CAN.G388.20' => 'can', 'CAN.G412.7' => 'can', 'CAN.G694.32' => 'can', 'CAN.G92.12' => 'can', 'CANSAT11G2353' => 'cansat', 'CANSAT21G1398' => 'cansat', 'CANSAT56G2456' => 'cansat', 'CANSAT56G3031' => 'cansat', 'CANSAT56G4539' => 'cansat', 'CARHR083680' => 'chi', 'CARHR171190' => 'chi', 'CARHR209010' => 'chi', 'CARHR229680' => 'chi', 'CARHR249490' => 'chi', 'Carub.0003s0844' => 'cru', 'Carub.0005s2755' => 'cru', 'Carub.0006s0322' => 'cru', 'Carub.0006s3586' => 'cru', 'Carub.0007s1855' => 'cru', 'Ca_07808_v3' => 'car', 'Ca_09535_v3' => 'car', 'Ca_10548_v3' => 'car', 'Ca_19913_v3' => 'car', 'Ca_19916_v3' => 'car', 'Ca_19975_v3' => 'car', 'CBR_g22876' => 'cbr', 'CBR_g22879' => 'cbr', 'CBR_g38491' => 'cbr', 'CBR_g54185' => 'cbr', 'CBR_g54190' => 'cbr', 'Cc02_g11020' => 'ccan', 'Cc02_g23920' => 'ccan', 'Cc02_g39860' => 'ccan', 'Cc02_g39870' => 'ccan', 'Cc03_g06760' => 'ccan', 'Cc06_g02450' => 'ccan', 'Cc09_g09450' => 'ccan', 'CDE02G1959' => 'cde', 'CDE04G0600' => 'cde', 'CDE07G1996' => 'cde', 'CDE07G2078' => 'cde', 'CDE11G0611' => 'cde', 'Cfa001683' => 'cfa', 'Cfa001734' => 'cfa', 'Cfa001737' => 'cfa', 'Cfa003751' => 'cfa', 'Cfa012019' => 'cfa', 'Cfa017353' => 'cfa', 'Cfa017732' => 'cfa', 'Cfa022464' => 'cfa', 'Ciclev10012400m.g' => 'ccl', 'Ciclev10021242m.g' => 'ccl', 'Ciclev10021302m.g' => 'ccl', 'Ciclev10021463m.g' => 'ccl', 'Ciclev10032359m.g' => 'ccl', 'CiPaw.01G081000' => 'cil', 'CiPaw.01G262500' => 'cil', 'CiPaw.01G269800' => 'cil', 'CiPaw.02G168400' => 'cil', 'CiPaw.05G119500' => 'cil', 'CiPaw.11G147300' => 'cil', 'ClCG01G003630' => 'cla', 'ClCG05G000510' => 'cla', 'ClCG05G002300' => 'cla', 'ClCG08G007650' => 'cla', 'ClCG10G021250' => 'cla', 'COL.COLO4_06218' => 'col', 'COL.COLO4_12538' => 'col', 'COL.COLO4_14775' => 'col', 'COL.COLO4_23875' => 'col', 'Cpa.g.sc141.16' => 'cpa', 'Cpa.g.sc169.16' => 'cpa', 'Cpa.g.sc244.4' => 'cpa', 'Cpa.g.sc244.5' => 'cpa', 'Cpa.g.sc29.87' => 'cpa', 'Cpa.g.sc53.115' => 'cpa', 'Cre03.g207502' => 'cre', 'Cre06.g277000' => 'cre', 'Cre09.g394050' => 'cre', 'CsaV3_3G007680' => 'csa', 'CsaV3_3G009710' => 'csa', 'CsaV3_3G034790' => 'csa', 'CsaV3_5G003750' => 'csa', 'CsaV3_6G036620' => 'csa', 'CSS0002288' => 'camsi', 'CSS0011250' => 'camsi', 'CSS0021619' => 'camsi', 'CSS0046701' => 'camsi', 'DCAR_006420' => 'dca', 'DCAR_006865' => 'dca', 'DCAR_008558' => 'dca', 'DCAR_028754' => 'dca', 'DCAR_028755' => 'dca', 'Dinv31218' => 'din', 'Dinv32371' => 'din', 'Dinv34250' => 'din', 'Dinv37156' => 'din', 'Dinv43704' => 'din', 'Duzib093G1811' => 'dzi', 'Duzib106G1622' => 'dzi', 'Duzib114G0504' => 'dzi', 'Duzib128G0338' => 'dzi', 'Duzib128G1577' => 'dzi', 'Duzib133G0104' => 'dzi', 'Duzib133G1080' => 'dzi', 'Duzib138G0324' => 'dzi', 'Duzib138G0394' => 'dzi', 'Duzib205G0122' => 'dzi', 'Duzib268G1020' => 'dzi', 'Duzib268G1359' => 'dzi', 'ECA232G3929' => 'eca', 'ECA236G2210' => 'eca', 'ECA236G2287' => 'eca', 'ECA240G4568' => 'eca', 'ECA247G0894' => 'eca', 'EL10Ac1g00200' => 'bvu', 'EL10Ac1g00886' => 'bvu', 'EL10As1g23091' => 'bvu', 'EL10As1g23092' => 'bvu', 'Eucgr.A01284' => 'egr', 'Eucgr.A01285' => 'egr', 'Eucgr.D02456' => 'egr', 'Eucgr.E00018' => 'egr', 'Eucgr.E01439' => 'egr', 'Eucgr.G02859' => 'egr', 'FAN01G0168' => 'fan', 'FAN01G0453' => 'fan', 'FAN01G2761' => 'fan', 'FAN02G1239' => 'fan', 'FAN03G0645' => 'fan', 'FAN03G2707' => 'fan', 'FAN03G2978' => 'fan', 'FAN04G0227' => 'fan', 'FAN06G0091' => 'fan', 'FAN06G1418' => 'fan', 'FAN06G1512' => 'fan', 'FAN06G1986' => 'fan', 'FAN06G2905' => 'fan', 'FAN06G4325' => 'fan', 'FAN08G0033' => 'fan', 'FAN09G0642' => 'fan', 'FAN10G1763' => 'fan', 'FAN10G2026' => 'fan', 'FAN10G2513' => 'fan', 'FAN10G3402' => 'fan', 'FAN10G3564' => 'fan', 'FAN10G3987' => 'fan', 'FAN13G1490' => 'fan', 'FAN14G5857' => 'fan', 'FAN18G1188' => 'fan', 'FvH4_5g00750' => 'fve', 'FvH4_6g13410' => 'fve', 'FvH4_7g11740' => 'fve', 'FvH4_7g17410' => 'fve', 'FvH4_7g18860' => 'fve', 'Glyma.01G099100' => 'gma', 'Glyma.01G142300' => 'gma', 'Glyma.03G025500' => 'gma', 'Glyma.03G069700' => 'gma', 'Glyma.03G260000' => 'gma', 'Glyma.09G269800' => 'gma', 'Glyma.10G208700' => 'gma', 'Glyma.18G220400' => 'gma', 'Glyma.20G182000' => 'gma', 'Gohir.A01G221726' => 'ghi', 'Gohir.A07G134600' => 'ghi', 'Gohir.A07G146000' => 'ghi', 'Gohir.A08G173900' => 'ghi', 'Gohir.A09G194900' => 'ghi', 'Gohir.A10G204100' => 'ghi', 'Gohir.A11G080600' => 'ghi', 'Gohir.A11G327500' => 'ghi', 'Gohir.A12G101800' => 'ghi', 'Gohir.D01G211200' => 'ghi', 'Gohir.D07G139200' => 'ghi', 'Gohir.D07G152100' => 'ghi', 'Gohir.D08G192600' => 'ghi', 'Gohir.D09G189200' => 'ghi', 'Gohir.D10G212000' => 'ghi', 'Gohir.D11G085200' => 'ghi', 'Gohir.D11G346400' => 'ghi', 'Gohir.D12G104800' => 'ghi', 'Gorai.001G151300' => 'gra', 'Gorai.001G174100' => 'gra', 'Gorai.002G257000' => 'gra', 'Gorai.004G202600' => 'gra', 'Gorai.007G090900' => 'gra', 'Gorai.007G376700' => 'gra', 'Gorai.008G114100' => 'gra', 'Gorai.011G237900' => 'gra', 'GSVIVG01005450001' => 'vvi', 'GSVIVG01016232001' => 'vvi', 'GSVIVG01026157001' => 'vvi', 'GSVIVG01027419001' => 'vvi', 'GSVIVG01027631001' => 'vvi', 'GSVIVG01034143001' => 'vvi', 'HanXRQChr03g0093921' => 'han', 'HanXRQChr04g0120001' => 'han', 'HanXRQChr04g0122561' => 'han', 'HanXRQChr09g0246851' => 'han', 'HanXRQChr10g0293311' => 'han', 'HanXRQChr13g0425231' => 'han', 'HanXRQChr16g0532571' => 'han', 'Haze_09050' => 'cav', 'Haze_15715' => 'cav', 'Haze_15716' => 'cav', 'Haze_16803' => 'cav', 'Haze_16850' => 'cav', 'Hma1.2p1_0301F.1_g118655' => 'hma', 'Hma1.2p1_0309F.1_g120590' => 'hma', 'Hma1.2p1_0936F.1_g238900' => 'hma', 'Hma1.2p1_3552F.1_g336740' => 'hma', 'HPP92_003520' => 'vpl', 'HPP92_006628' => 'vpl', 'HPP92_006645' => 'vpl', 'HPP92_014669' => 'vpl', 'HPP92_015077' => 'vpl', 'Hund16742' => 'sun', 'Hund17022' => 'sun', 'Lalb_Chr02g0152131' => 'lal', 'Lalb_Chr05g0225371' => 'lal', 'Lalb_Chr07g0189841' => 'lal', 'Lalb_Chr07g0192961' => 'lal', 'Lalb_Chr12g0208221' => 'lal', 'Lalb_Chr13g0291211' => 'lal', 'Lalb_Chr13g0291781' => 'lal', 'Lalb_Chr18g0044651' => 'lal', 'Lalb_Chr21g0313731' => 'lal', 'Lj1g0022533' => 'lja', 'Lj2A18T50' => 'lonja', 'Lj2A92G93' => 'lonja', 'Lj3A965T73' => 'lonja', 'Lj3g0000673' => 'lja', 'Lj3g0002666' => 'lja', 'Lj4g0016985' => 'lja', 'Lj5g0003625' => 'lja', 'Lj7A529G36' => 'lonja', 'Lj9A569T49' => 'lonja', 'Lj9A604T63' => 'lonja', 'Lsat_1_v5_gn_3_132060' => 'lsa', 'Lsat_1_v5_gn_4_68941' => 'lsa', 'Lsat_1_v5_gn_5_95580' => 'lsa', 'Lsat_1_v5_gn_7_161' => 'lsa', 'Lsat_1_v5_gn_7_7041' => 'lsa', 'Lsat_1_v5_gn_9_33481' => 'lsa', 'Lsat_1_v5_gn_9_68260' => 'lsa', 'Manes.01G073100' => 'mes', 'Manes.01G266300' => 'mes', 'Manes.02G033300' => 'mes', 'Manes.05G017900' => 'mes', 'Manes.05G046100' => 'mes', 'Manes.08G080900' => 'mes', 'Manes.10G049400' => 'mes', 'Mapoly0009s0186' => 'mpo', 'Mapoly0036s0118' => 'mpo', 'Mapoly0101s0046' => 'mpo', 'MBI04_g30218_MAGBIO' => 'mbi', 'MBI04_g35564_MAGBIO' => 'mbi', 'MBI12_g34011_MAGBIO' => 'mbi', 'MBI14_g04655_MAGBIO' => 'mbi', 'MCO07G653' => 'mco', 'MCO10G173' => 'mco', 'MD01G1087100' => 'mdo', 'MD01G1104200' => 'mdo', 'MD02G1205100' => 'mdo', 'MD04G1079200' => 'mdo', 'MD04G1131400' => 'mdo', 'MD07G1121600' => 'mdo', 'MD07G1157300' => 'mdo', 'MD07G1171000' => 'mdo', 'MD12G1144500' => 'mdo', 'Medtr1g094610' => 'mtr', 'Medtr4g021795' => 'mtr', 'Medtr4g023760' => 'mtr', 'Medtr7g118050' => 'mtr', 'MELO3C005582.2' => 'cme', 'MELO3C005989.2' => 'cme', 'MELO3C006192.2' => 'cme', 'MELO3C009248.2' => 'cme', 'MELO3C019817.2' => 'cme', 'Migut.B01625' => 'egut', 'Migut.B01915' => 'egut', 'Migut.F01721' => 'egut', 'Migut.J00314' => 'egut', 'MSTRG.20742' => 'ama', 'MSTRG.8134' => 'ama', 'Nitab4.5_0000096g0010' => 'nta', 'Nitab4.5_0000202g0030' => 'nta', 'Nitab4.5_0000216g0370' => 'nta', 'Nitab4.5_0000457g0230' => 'nta', 'Nitab4.5_0001702g0170' => 'nta', 'Nitab4.5_0003607g0010' => 'nta', 'Nitab4.5_0004917g0020' => 'nta', 'Nitab4.5_0007059g0010' => 'nta', 'Nitab4.5_0007184g0010' => 'nta', 'Nitab4.5_0007346g0020' => 'nta', 'Nn1g00410' => 'nnu', 'Nn1g01252' => 'nnu', 'Nn2g11168' => 'nnu', 'Nn2g13403' => 'nnu', 'Nn2g13760' => 'nnu', 'Nn4g26380' => 'nnu', 'Oeu000806.2' => 'oeu', 'Oeu005788.1' => 'oeu', 'Oeu006900.3' => 'oeu', 'Oeu007797.1' => 'oeu', 'Oeu011932.1' => 'oeu', 'Oeu022739.1' => 'oeu', 'Oeu037918.1' => 'oeu', 'Oeu055490.2' => 'oeu', 'Os01g0844400' => 'osa', 'Os02g0819100' => 'osa', 'Os03g0804300' => 'osa', 'Os05g0458000' => 'osa', 'Os07g0467800' => 'osa', 'Os12g0602200' => 'osa', 'Peaxi162Scf00013g03444' => 'pax', 'Peaxi162Scf00094g01120' => 'pax', 'Peaxi162Scf00191g01211' => 'pax', 'Peaxi162Scf00238g01110' => 'pax', 'Peaxi162Scf00330g00719' => 'pax', 'Peaxi162Scf00627g00018' => 'pax', 'PGR031G2686' => 'pgr', 'PGR042G0809' => 'pgr', 'PGR142G0193' => 'pgr', 'PGSC0003DMG400011066' => 'stu', 'PGSC0003DMG400012041' => 'stu', 'PGSC0003DMG400013678' => 'stu', 'PGSC0003DMG400023477' => 'stu', 'PGSC0003DMG400025956' => 'stu', 'PGSC0003DMG401019151' => 'stu', 'Phvul.006G116400' => 'pvu', 'Phvul.007G097300' => 'pvu', 'Phvul.010G015000' => 'pvu', 'Phvul.010G083900' => 'pvu', 'Potri.001G117100' => 'ptr', 'Potri.002G147300' => 'ptr', 'Potri.003G115600' => 'ptr', 'Potri.006G087400' => 'ptr', 'Potri.010G226100' => 'ptr', 'Potri.014G069200' => 'ptr', 'Potri.014G104000' => 'ptr', 'Potri.016G100200' => 'ptr', 'Pp3c10_20450' => 'ppa', 'Pp3c1_42400' => 'ppa', 'Pp3c3_24390' => 'ppa', 'Pp3c3_2860' => 'ppa', 'PRCOL_00003193' => 'pco', 'Prupe.2G144500' => 'ppe', 'Prupe.2G195700' => 'ppe', 'Prupe.2G209800' => 'ppe', 'Prupe.5G080000' => 'ppe', 'Prupe.6G257900' => 'ppe', 'Psat3g001160' => 'psa', 'Psat6g181880' => 'psa', 'Psat7g233720' => 'psa', 'PSO063G7587' => 'pso', 'PSO339G2145' => 'pso', 'PSO339G3369' => 'pso', 'PSO478G2747' => 'pso', 'PSO513G0140' => 'pso', 'PSO782G1614' => 'pso', 'PSO782G4889' => 'pso', 'PSO782G5485' => 'pso', 'PSO801G0241' => 'pso', 'QL07p048854' => 'qlo', 'QL08p046745' => 'qlo', 'QL08p052606' => 'qlo', 'QL08p053414' => 'qlo', 'QL08p054868' => 'qlo', 'RcHm_v2.0_Chr1g0350251' => 'rch', 'RcHm_v2.0_Chr1g0360851' => 'rch', 'RcHm_v2.0_Chr1g0362791' => 'rch', 'RcHm_v2.0_Chr3g0466281' => 'rch', 'RcHm_v2.0_Chr7g0201481' => 'rch', 'Rhsim01G0148600' => 'rsi', 'Rhsim05G0194400' => 'rsi', 'Rhsim07G0000700' => 'rsi', 'Rhsim07G0000800' => 'rsi', 'Rhsim07G0027900' => 'rsi', 'Rhsim09G0149500' => 'rsi', 'RhsimUnG0186900' => 'rsi', 'Sabra01G0089900' => 'sbr', 'Sabra02G0114700' => 'sbr', 'Sabra02G0116300' => 'sbr', 'Sabra03G0080100' => 'sbr', 'Sabra08G0024300' => 'sbr', 'Sabra10G0174300' => 'sbr', 'Sabra14G0048900' => 'sbr', 'Sabra14G0076500' => 'sbr', 'SalBow5G2513' => 'sbo', 'Sc01g0002300' => 'sci', 'Sc01g0004450' => 'sci', 'Sc06g0001680' => 'sci', 'Sc23g0003580' => 'sci', 'Sed0000913' => 'sed', 'Sed0001655' => 'sed', 'Sed0007745' => 'sed', 'Sed0010951' => 'sed', 'Sed0017599' => 'sed', 'Sed0021405' => 'sed', 'Sed0022810' => 'sed', 'SEGI_07099' => 'sgi', 'SEGI_11931' => 'sgi', 'SEGI_13187' => 'sgi', 'SEGI_29958' => 'sgi', 'SEGI_36351' => 'sgi', 'SGA_v2.0_scaffold126G33770' => 'sas', 'SGA_v2.0_scaffold153G37003' => 'sas', 'SGA_v2.0_scaffold2G01359' => 'sas', 'SGA_v2.0_scaffold5G03064' => 'sas', 'SGA_v2.0_scaffold95G28903' => 'sas', 'SHI12701' => 'shi', 'SHI26410' => 'shi', 'SHI38997' => 'shi', 'SHI53759' => 'shi', 'SHI53886' => 'shi', 'SHI54714' => 'shi', 'SMO011G0041' => 'smo', 'SMO146G0251' => 'smo', 'SMO160G0004' => 'smo', 'SMO174G0057' => 'smo', 'SMO244G0089' => 'smo', 'SMO296G0011' => 'smo', 'Solyc01g091280.3' => 'sly', 'Solyc05g047610.3' => 'sly', 'Solyc05g047640.3' => 'sly', 'Solyc05g055630.3' => 'sly', 'Solyc10g018160.2' => 'sly', 'Solyc10g084820.2' => 'sly', 'Solyc10g086565.2' => 'sly', 'Sopen01g037030' => 'spe', 'Sopen05g027920' => 'spe', 'Sopen05g034070' => 'spe', 'Sopen10g007260' => 'spe', 'Sopen10g034260' => 'spe', 'Sopen10g035950' => 'spe', 'Sp3g07710' => 'spa', 'Sp4g27420' => 'spa', 'Sp5g02450' => 'spa', 'Sp6g01280' => 'spa', 'Sp6g38480' => 'spa', 'Sp7g20780' => 'spa', 'TAR374G1413' => 'tar', 'TAR623G1777' => 'tar', 'TAR629G2370' => 'tar', 'TAR633G1759' => 'tar', 'TAR636G3387' => 'tar', 'THA.LOC104802447' => 'tha', 'THA.LOC104813916' => 'tha', 'THA.LOC104816423' => 'tha', 'THA.LOC104817246' => 'tha', 'THA.LOC104825895' => 'tha', 'Thecc.01G335200' => 'tca', 'Thecc.01G377400' => 'tca', 'Thecc.03G262200' => 'tca', 'Thecc.05G036800' => 'tca', 'Thecc.10G080500' => 'tca', 'Thecc.10G080800' => 'tca', 'Thhalv10001560m.g' => 'esa', 'Thhalv10006120m.g' => 'esa', 'Thhalv10014375m.g' => 'esa', 'Thhalv10021264m.g' => 'esa', 'Thhalv10028856m.g' => 'esa', 'TPR.G1914' => 'tpr', 'TPR.G4757' => 'tpr', 'TPR.G5595' => 'tpr', 'TWI14G0952' => 'twi', 'TWI14G1307' => 'twi', 'TWI38G2143' => 'twi', 'TWI59G0826' => 'twi', 'TWI77G0527' => 'twi', 'TWI81G0150' => 'twi', 'unitig_21.g21018' => 'ugi', 'unitig_26.g9725' => 'ugi', 'unitig_744.g24653' => 'ugi', 'unitig_749.g13778' => 'ugi', 'unitig_899.g15035' => 'ugi', 'vmacro04296' => 'vma', 'vmacro04852' => 'vma', 'vmacro13404' => 'vma', 'vmacro20169' => 'vma', 'vmacro21014' => 'vma', 'VMungo0331G0237' => 'vmu', 'VMungo0331G0706' => 'vmu', 'VMungo0331G1361' => 'vmu', 'VMungo0331G1489' => 'vmu', 'VMungo0540G1037' => 'vmu', 'VMungo0720G2487' => 'vmu', 'VMungo0720G2721' => 'vmu', 'Zm00001eb086860' => 'zma', 'Zm00001eb104760' => 'zma', 'Zm00001eb148220' => 'zma', 'Zm00001eb259030' => 'zma', 'Zm00001eb289590' => 'zma', 'Zm00001eb420150' => 'zma' ), 'gf_id' => 'HOM05D000968', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000968' ), 'data_identifier' => 'HOM05D000968', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000968', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p31690' => 'bna', 'A03p36040' => 'bna', 'A03p53730' => 'bna', 'A04p01410' => 'bna', 'A05p05420' => 'bna', 'A05p39630' => 'bna', 'A05p39640' => 'bna', 'A09p00970' => 'bna', 'A09p53060' => 'bna', 'A10p31890' => 'bna', 'Aa31LG10G15040' => 'aar', 'Aa31LG1G21090' => 'aar', 'Aa31LG1G26900' => 'aar', 'Aa31LG3G1820' => 'aar', 'Aa31LG5G1100' => 'aar', 'Aa31LG6G4740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2265' => 'aag', 'Actinidia07998' => 'ach', 'Actinidia11266' => 'ach', 'Actinidia12682' => 'ach', 'Actinidia26479' => 'ach', 'Actinidia31406' => 'ach', 'Actinidia32437' => 'ach', 'Actinidia38862' => 'ach', 'Ah.05g174230' => 'amhyb', 'Ah.05g179070' => 'amhyb', 'Ah.05g179090' => 'amhyb', 'Ah.12g059950' => 'amhyb', 'AL3G20480' => 'aly', 'AL4G44520' => 'aly', 'AL5G43110' => 'aly', 'AL6G13890' => 'aly', 'AL6G52620' => 'aly', 'AL7G30830' => 'aly', 'Aqoxy1G00899' => 'aox', 'Aqoxy5G04333' => 'aox', 'Aqoxy7G00641' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3IZ0NN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4EF6AW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W9P8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79GA3M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C43NQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFCU6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G95YVJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCHK29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LU1UG8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX91RN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGB4B1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8DA0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9H7JI' => 'arhy', 'AT3G09320' => 'ath', 'AT3G60800' => 'ath', 'AT4G00840' => 'ath', 'AT4G22750' => 'ath', 'AT5G04270' => 'ath', 'ATR0090G003' => 'atr', 'ATR0559G349' => 'atr', 'ATR0680G261' => 'atr', 'ATR0810G048' => 'atr', 'Atru.chr12.831' => 'acertr', 'Atru.chr5.303' => 'acertr', 'Atru.chr5.748' => 'acertr', 'Atru.chr8.1999' => 'acertr', 'Atru.chr9.1436' => 'acertr', 'AUR62004211' => 'cqu', 'AUR62004548' => 'cqu', 'AUR62013637' => 'cqu', 'AUR62022662' => 'cqu', 'AUR62025777' => 'cqu', 'AUR62042386' => 'cqu', 'BcaB01g02310' => 'bca', 'BcaB01g06062' => 'bca', 'BcaB02g08975' => 'bca', 'BcaB02g08980' => 'bca', 'BcaC01g04228' => 'bca', 'BcaC01g06830' => 'bca', 'BcaC02g10186' => 'bca', 'BcaC02g12214' => 'bca', 'BcaC04g24101' => 'bca', 'BcaC05g29520' => 'bca', 'BcaC05g29661' => 'bca', 'BcaC06g32130' => 'bca', 'BcaC06g32131' => 'bca', 'BcaC07g40601' => 'bca', 'BcaC07g42641' => 'bca', 'BcaNung01038' => 'bca', 'BcaNung01676' => 'bca', 'BcaNung02480' => 'bca', 'BcaNung07376' => 'bca', 'BolC3t16146H' => 'bol', 'BolC3t16637H' => 'bol', 'BolC4t22257H' => 'bol', 'BolC4t24728H' => 'bol', 'BolC5t34517H' => 'bol', 'BolC7t45703H' => 'bol', 'BolC8t51166H' => 'bol', 'BolC9t53038H' => 'bol', 'BolC9t60000H' => 'bol', 'BraA01t01345Z' => 'bra', 'BraA01t01346Z' => 'bra', 'BraA01t01348Z' => 'bra', 'BraA03t12347Z' => 'bra', 'BraA03t12775Z' => 'bra', 'BraA03t14439Z' => 'bra', 'BraA04t15860Z' => 'bra', 'BraA05t19511Z' => 'bra', 'BraA05t22746Z' => 'bra', 'BraA09t35767Z' => 'bra', 'BraA09t40732Z' => 'bra', 'BraA10t45233Z' => 'bra', 'C03p38720' => 'bna', 'C03p43680' => 'bna', 'C04p06350' => 'bna', 'C04p31800' => 'bna', 'C05p58680' => 'bna', 'C07p52110' => 'bna', 'C08p35760' => 'bna', 'C09p01050' => 'bna', 'C09p72600' => 'bna', 'CAN.G106.2' => 'can', 'CAN.G1482.1' => 'can', 'CAN.G324.12' => 'can', 'CAN.G388.20' => 'can', 'CAN.G412.7' => 'can', 'CAN.G694.32' => 'can', 'CAN.G92.12' => 'can', 'CANSAT11G2353' => 'cansat', 'CANSAT21G1398' => 'cansat', 'CANSAT56G2456' => 'cansat', 'CANSAT56G3031' => 'cansat', 'CANSAT56G4539' => 'cansat', 'CARHR083680' => 'chi', 'CARHR171190' => 'chi', 'CARHR209010' => 'chi', 'CARHR229680' => 'chi', 'CARHR249490' => 'chi', 'Carub.0003s0844' => 'cru', 'Carub.0005s2755' => 'cru', 'Carub.0006s0322' => 'cru', 'Carub.0006s3586' => 'cru', 'Carub.0007s1855' => 'cru', 'Ca_07808_v3' => 'car', 'Ca_09535_v3' => 'car', 'Ca_10548_v3' => 'car', 'Ca_19913_v3' => 'car', 'Ca_19916_v3' => 'car', 'Ca_19975_v3' => 'car', 'CBR_g22876' => 'cbr', 'CBR_g22879' => 'cbr', 'CBR_g38491' => 'cbr', 'CBR_g54185' => 'cbr', 'CBR_g54190' => 'cbr', 'Cc02_g11020' => 'ccan', 'Cc02_g23920' => 'ccan', 'Cc02_g39860' => 'ccan', 'Cc02_g39870' => 'ccan', 'Cc03_g06760' => 'ccan', 'Cc06_g02450' => 'ccan', 'Cc09_g09450' => 'ccan', 'CDE02G1959' => 'cde', 'CDE04G0600' => 'cde', 'CDE07G1996' => 'cde', 'CDE07G2078' => 'cde', 'CDE11G0611' => 'cde', 'Cfa001683' => 'cfa', 'Cfa001734' => 'cfa', 'Cfa001737' => 'cfa', 'Cfa003751' => 'cfa', 'Cfa012019' => 'cfa', 'Cfa017353' => 'cfa', 'Cfa017732' => 'cfa', 'Cfa022464' => 'cfa', 'Ciclev10012400m.g' => 'ccl', 'Ciclev10021242m.g' => 'ccl', 'Ciclev10021302m.g' => 'ccl', 'Ciclev10021463m.g' => 'ccl', 'Ciclev10032359m.g' => 'ccl', 'CiPaw.01G081000' => 'cil', 'CiPaw.01G262500' => 'cil', 'CiPaw.01G269800' => 'cil', 'CiPaw.02G168400' => 'cil', 'CiPaw.05G119500' => 'cil', 'CiPaw.11G147300' => 'cil', 'ClCG01G003630' => 'cla', 'ClCG05G000510' => 'cla', 'ClCG05G002300' => 'cla', 'ClCG08G007650' => 'cla', 'ClCG10G021250' => 'cla', 'COL.COLO4_06218' => 'col', 'COL.COLO4_12538' => 'col', 'COL.COLO4_14775' => 'col', 'COL.COLO4_23875' => 'col', 'Cpa.g.sc141.16' => 'cpa', 'Cpa.g.sc169.16' => 'cpa', 'Cpa.g.sc244.4' => 'cpa', 'Cpa.g.sc244.5' => 'cpa', 'Cpa.g.sc29.87' => 'cpa', 'Cpa.g.sc53.115' => 'cpa', 'Cre03.g207502' => 'cre', 'Cre06.g277000' => 'cre', 'Cre09.g394050' => 'cre', 'CsaV3_3G007680' => 'csa', 'CsaV3_3G009710' => 'csa', 'CsaV3_3G034790' => 'csa', 'CsaV3_5G003750' => 'csa', 'CsaV3_6G036620' => 'csa', 'CSS0002288' => 'camsi', 'CSS0011250' => 'camsi', 'CSS0021619' => 'camsi', 'CSS0046701' => 'camsi', 'DCAR_006420' => 'dca', 'DCAR_006865' => 'dca', 'DCAR_008558' => 'dca', 'DCAR_028754' => 'dca', 'DCAR_028755' => 'dca', 'Dinv31218' => 'din', 'Dinv32371' => 'din', 'Dinv34250' => 'din', 'Dinv37156' => 'din', 'Dinv43704' => 'din', 'Duzib093G1811' => 'dzi', 'Duzib106G1622' => 'dzi', 'Duzib114G0504' => 'dzi', 'Duzib128G0338' => 'dzi', 'Duzib128G1577' => 'dzi', 'Duzib133G0104' => 'dzi', 'Duzib133G1080' => 'dzi', 'Duzib138G0324' => 'dzi', 'Duzib138G0394' => 'dzi', 'Duzib205G0122' => 'dzi', 'Duzib268G1020' => 'dzi', 'Duzib268G1359' => 'dzi', 'ECA232G3929' => 'eca', 'ECA236G2210' => 'eca', 'ECA236G2287' => 'eca', 'ECA240G4568' => 'eca', 'ECA247G0894' => 'eca', 'EL10Ac1g00200' => 'bvu', 'EL10Ac1g00886' => 'bvu', 'EL10As1g23091' => 'bvu', 'EL10As1g23092' => 'bvu', 'Eucgr.A01284' => 'egr', 'Eucgr.A01285' => 'egr', 'Eucgr.D02456' => 'egr', 'Eucgr.E00018' => 'egr', 'Eucgr.E01439' => 'egr', 'Eucgr.G02859' => 'egr', 'FAN01G0168' => 'fan', 'FAN01G0453' => 'fan', 'FAN01G2761' => 'fan', 'FAN02G1239' => 'fan', 'FAN03G0645' => 'fan', 'FAN03G2707' => 'fan', 'FAN03G2978' => 'fan', 'FAN04G0227' => 'fan', 'FAN06G0091' => 'fan', 'FAN06G1418' => 'fan', 'FAN06G1512' => 'fan', 'FAN06G1986' => 'fan', 'FAN06G2905' => 'fan', 'FAN06G4325' => 'fan', 'FAN08G0033' => 'fan', 'FAN09G0642' => 'fan', 'FAN10G1763' => 'fan', 'FAN10G2026' => 'fan', 'FAN10G2513' => 'fan', 'FAN10G3402' => 'fan', 'FAN10G3564' => 'fan', 'FAN10G3987' => 'fan', 'FAN13G1490' => 'fan', 'FAN14G5857' => 'fan', 'FAN18G1188' => 'fan', 'FvH4_5g00750' => 'fve', 'FvH4_6g13410' => 'fve', 'FvH4_7g11740' => 'fve', 'FvH4_7g17410' => 'fve', 'FvH4_7g18860' => 'fve', 'Glyma.01G099100' => 'gma', 'Glyma.01G142300' => 'gma', 'Glyma.03G025500' => 'gma', 'Glyma.03G069700' => 'gma', 'Glyma.03G260000' => 'gma', 'Glyma.09G269800' => 'gma', 'Glyma.10G208700' => 'gma', 'Glyma.18G220400' => 'gma', 'Glyma.20G182000' => 'gma', 'Gohir.A01G221726' => 'ghi', 'Gohir.A07G134600' => 'ghi', 'Gohir.A07G146000' => 'ghi', 'Gohir.A08G173900' => 'ghi', 'Gohir.A09G194900' => 'ghi', 'Gohir.A10G204100' => 'ghi', 'Gohir.A11G080600' => 'ghi', 'Gohir.A11G327500' => 'ghi', 'Gohir.A12G101800' => 'ghi', 'Gohir.D01G211200' => 'ghi', 'Gohir.D07G139200' => 'ghi', 'Gohir.D07G152100' => 'ghi', 'Gohir.D08G192600' => 'ghi', 'Gohir.D09G189200' => 'ghi', 'Gohir.D10G212000' => 'ghi', 'Gohir.D11G085200' => 'ghi', 'Gohir.D11G346400' => 'ghi', 'Gohir.D12G104800' => 'ghi', 'Gorai.001G151300' => 'gra', 'Gorai.001G174100' => 'gra', 'Gorai.002G257000' => 'gra', 'Gorai.004G202600' => 'gra', 'Gorai.007G090900' => 'gra', 'Gorai.007G376700' => 'gra', 'Gorai.008G114100' => 'gra', 'Gorai.011G237900' => 'gra', 'GSVIVG01005450001' => 'vvi', 'GSVIVG01016232001' => 'vvi', 'GSVIVG01026157001' => 'vvi', 'GSVIVG01027419001' => 'vvi', 'GSVIVG01027631001' => 'vvi', 'GSVIVG01034143001' => 'vvi', 'HanXRQChr03g0093921' => 'han', 'HanXRQChr04g0120001' => 'han', 'HanXRQChr04g0122561' => 'han', 'HanXRQChr09g0246851' => 'han', 'HanXRQChr10g0293311' => 'han', 'HanXRQChr13g0425231' => 'han', 'HanXRQChr16g0532571' => 'han', 'Haze_09050' => 'cav', 'Haze_15715' => 'cav', 'Haze_15716' => 'cav', 'Haze_16803' => 'cav', 'Haze_16850' => 'cav', 'Hma1.2p1_0301F.1_g118655' => 'hma', 'Hma1.2p1_0309F.1_g120590' => 'hma', 'Hma1.2p1_0936F.1_g238900' => 'hma', 'Hma1.2p1_3552F.1_g336740' => 'hma', 'HPP92_003520' => 'vpl', 'HPP92_006628' => 'vpl', 'HPP92_006645' => 'vpl', 'HPP92_014669' => 'vpl', 'HPP92_015077' => 'vpl', 'Hund16742' => 'sun', 'Hund17022' => 'sun', 'Lalb_Chr02g0152131' => 'lal', 'Lalb_Chr05g0225371' => 'lal', 'Lalb_Chr07g0189841' => 'lal', 'Lalb_Chr07g0192961' => 'lal', 'Lalb_Chr12g0208221' => 'lal', 'Lalb_Chr13g0291211' => 'lal', 'Lalb_Chr13g0291781' => 'lal', 'Lalb_Chr18g0044651' => 'lal', 'Lalb_Chr21g0313731' => 'lal', 'Lj1g0022533' => 'lja', 'Lj2A18T50' => 'lonja', 'Lj2A92G93' => 'lonja', 'Lj3A965T73' => 'lonja', 'Lj3g0000673' => 'lja', 'Lj3g0002666' => 'lja', 'Lj4g0016985' => 'lja', 'Lj5g0003625' => 'lja', 'Lj7A529G36' => 'lonja', 'Lj9A569T49' => 'lonja', 'Lj9A604T63' => 'lonja', 'Lsat_1_v5_gn_3_132060' => 'lsa', 'Lsat_1_v5_gn_4_68941' => 'lsa', 'Lsat_1_v5_gn_5_95580' => 'lsa', 'Lsat_1_v5_gn_7_161' => 'lsa', 'Lsat_1_v5_gn_7_7041' => 'lsa', 'Lsat_1_v5_gn_9_33481' => 'lsa', 'Lsat_1_v5_gn_9_68260' => 'lsa', 'Manes.01G073100' => 'mes', 'Manes.01G266300' => 'mes', 'Manes.02G033300' => 'mes', 'Manes.05G017900' => 'mes', 'Manes.05G046100' => 'mes', 'Manes.08G080900' => 'mes', 'Manes.10G049400' => 'mes', 'Mapoly0009s0186' => 'mpo', 'Mapoly0036s0118' => 'mpo', 'Mapoly0101s0046' => 'mpo', 'MBI04_g30218_MAGBIO' => 'mbi', 'MBI04_g35564_MAGBIO' => 'mbi', 'MBI12_g34011_MAGBIO' => 'mbi', 'MBI14_g04655_MAGBIO' => 'mbi', 'MCO07G653' => 'mco', 'MCO10G173' => 'mco', 'MD01G1087100' => 'mdo', 'MD01G1104200' => 'mdo', 'MD02G1205100' => 'mdo', 'MD04G1079200' => 'mdo', 'MD04G1131400' => 'mdo', 'MD07G1121600' => 'mdo', 'MD07G1157300' => 'mdo', 'MD07G1171000' => 'mdo', 'MD12G1144500' => 'mdo', 'Medtr1g094610' => 'mtr', 'Medtr4g021795' => 'mtr', 'Medtr4g023760' => 'mtr', 'Medtr7g118050' => 'mtr', 'MELO3C005582.2' => 'cme', 'MELO3C005989.2' => 'cme', 'MELO3C006192.2' => 'cme', 'MELO3C009248.2' => 'cme', 'MELO3C019817.2' => 'cme', 'Migut.B01625' => 'egut', 'Migut.B01915' => 'egut', 'Migut.F01721' => 'egut', 'Migut.J00314' => 'egut', 'MSTRG.20742' => 'ama', 'MSTRG.8134' => 'ama', 'Nitab4.5_0000096g0010' => 'nta', 'Nitab4.5_0000202g0030' => 'nta', 'Nitab4.5_0000216g0370' => 'nta', 'Nitab4.5_0000457g0230' => 'nta', 'Nitab4.5_0001702g0170' => 'nta', 'Nitab4.5_0003607g0010' => 'nta', 'Nitab4.5_0004917g0020' => 'nta', 'Nitab4.5_0007059g0010' => 'nta', 'Nitab4.5_0007184g0010' => 'nta', 'Nitab4.5_0007346g0020' => 'nta', 'Nn1g00410' => 'nnu', 'Nn1g01252' => 'nnu', 'Nn2g11168' => 'nnu', 'Nn2g13403' => 'nnu', 'Nn2g13760' => 'nnu', 'Nn4g26380' => 'nnu', 'Oeu000806.2' => 'oeu', 'Oeu005788.1' => 'oeu', 'Oeu006900.3' => 'oeu', 'Oeu007797.1' => 'oeu', 'Oeu011932.1' => 'oeu', 'Oeu022739.1' => 'oeu', 'Oeu037918.1' => 'oeu', 'Oeu055490.2' => 'oeu', 'Os01g0844400' => 'osa', 'Os02g0819100' => 'osa', 'Os03g0804300' => 'osa', 'Os05g0458000' => 'osa', 'Os07g0467800' => 'osa', 'Os12g0602200' => 'osa', 'Peaxi162Scf00013g03444' => 'pax', 'Peaxi162Scf00094g01120' => 'pax', 'Peaxi162Scf00191g01211' => 'pax', 'Peaxi162Scf00238g01110' => 'pax', 'Peaxi162Scf00330g00719' => 'pax', 'Peaxi162Scf00627g00018' => 'pax', 'PGR031G2686' => 'pgr', 'PGR042G0809' => 'pgr', 'PGR142G0193' => 'pgr', 'PGSC0003DMG400011066' => 'stu', 'PGSC0003DMG400012041' => 'stu', 'PGSC0003DMG400013678' => 'stu', 'PGSC0003DMG400023477' => 'stu', 'PGSC0003DMG400025956' => 'stu', 'PGSC0003DMG401019151' => 'stu', 'Phvul.006G116400' => 'pvu', 'Phvul.007G097300' => 'pvu', 'Phvul.010G015000' => 'pvu', 'Phvul.010G083900' => 'pvu', 'Potri.001G117100' => 'ptr', 'Potri.002G147300' => 'ptr', 'Potri.003G115600' => 'ptr', 'Potri.006G087400' => 'ptr', 'Potri.010G226100' => 'ptr', 'Potri.014G069200' => 'ptr', 'Potri.014G104000' => 'ptr', 'Potri.016G100200' => 'ptr', 'Pp3c10_20450' => 'ppa', 'Pp3c1_42400' => 'ppa', 'Pp3c3_24390' => 'ppa', 'Pp3c3_2860' => 'ppa', 'PRCOL_00003193' => 'pco', 'Prupe.2G144500' => 'ppe', 'Prupe.2G195700' => 'ppe', 'Prupe.2G209800' => 'ppe', 'Prupe.5G080000' => 'ppe', 'Prupe.6G257900' => 'ppe', 'Psat3g001160' => 'psa', 'Psat6g181880' => 'psa', 'Psat7g233720' => 'psa', 'PSO063G7587' => 'pso', 'PSO339G2145' => 'pso', 'PSO339G3369' => 'pso', 'PSO478G2747' => 'pso', 'PSO513G0140' => 'pso', 'PSO782G1614' => 'pso', 'PSO782G4889' => 'pso', 'PSO782G5485' => 'pso', 'PSO801G0241' => 'pso', 'QL07p048854' => 'qlo', 'QL08p046745' => 'qlo', 'QL08p052606' => 'qlo', 'QL08p053414' => 'qlo', 'QL08p054868' => 'qlo', 'RcHm_v2.0_Chr1g0350251' => 'rch', 'RcHm_v2.0_Chr1g0360851' => 'rch', 'RcHm_v2.0_Chr1g0362791' => 'rch', 'RcHm_v2.0_Chr3g0466281' => 'rch', 'RcHm_v2.0_Chr7g0201481' => 'rch', 'Rhsim01G0148600' => 'rsi', 'Rhsim05G0194400' => 'rsi', 'Rhsim07G0000700' => 'rsi', 'Rhsim07G0000800' => 'rsi', 'Rhsim07G0027900' => 'rsi', 'Rhsim09G0149500' => 'rsi', 'RhsimUnG0186900' => 'rsi', 'Sabra01G0089900' => 'sbr', 'Sabra02G0114700' => 'sbr', 'Sabra02G0116300' => 'sbr', 'Sabra03G0080100' => 'sbr', 'Sabra08G0024300' => 'sbr', 'Sabra10G0174300' => 'sbr', 'Sabra14G0048900' => 'sbr', 'Sabra14G0076500' => 'sbr', 'SalBow5G2513' => 'sbo', 'Sc01g0002300' => 'sci', 'Sc01g0004450' => 'sci', 'Sc06g0001680' => 'sci', 'Sc23g0003580' => 'sci', 'Sed0000913' => 'sed', 'Sed0001655' => 'sed', 'Sed0007745' => 'sed', 'Sed0010951' => 'sed', 'Sed0017599' => 'sed', 'Sed0021405' => 'sed', 'Sed0022810' => 'sed', 'SEGI_07099' => 'sgi', 'SEGI_11931' => 'sgi', 'SEGI_13187' => 'sgi', 'SEGI_29958' => 'sgi', 'SEGI_36351' => 'sgi', 'SGA_v2.0_scaffold126G33770' => 'sas', 'SGA_v2.0_scaffold153G37003' => 'sas', 'SGA_v2.0_scaffold2G01359' => 'sas', 'SGA_v2.0_scaffold5G03064' => 'sas', 'SGA_v2.0_scaffold95G28903' => 'sas', 'SHI12701' => 'shi', 'SHI26410' => 'shi', 'SHI38997' => 'shi', 'SHI53759' => 'shi', 'SHI53886' => 'shi', 'SHI54714' => 'shi', 'SMO011G0041' => 'smo', 'SMO146G0251' => 'smo', 'SMO160G0004' => 'smo', 'SMO174G0057' => 'smo', 'SMO244G0089' => 'smo', 'SMO296G0011' => 'smo', 'Solyc01g091280.3' => 'sly', 'Solyc05g047610.3' => 'sly', 'Solyc05g047640.3' => 'sly', 'Solyc05g055630.3' => 'sly', 'Solyc10g018160.2' => 'sly', 'Solyc10g084820.2' => 'sly', 'Solyc10g086565.2' => 'sly', 'Sopen01g037030' => 'spe', 'Sopen05g027920' => 'spe', 'Sopen05g034070' => 'spe', 'Sopen10g007260' => 'spe', 'Sopen10g034260' => 'spe', 'Sopen10g035950' => 'spe', 'Sp3g07710' => 'spa', 'Sp4g27420' => 'spa', 'Sp5g02450' => 'spa', 'Sp6g01280' => 'spa', 'Sp6g38480' => 'spa', 'Sp7g20780' => 'spa', 'TAR374G1413' => 'tar', 'TAR623G1777' => 'tar', 'TAR629G2370' => 'tar', 'TAR633G1759' => 'tar', 'TAR636G3387' => 'tar', 'THA.LOC104802447' => 'tha', 'THA.LOC104813916' => 'tha', 'THA.LOC104816423' => 'tha', 'THA.LOC104817246' => 'tha', 'THA.LOC104825895' => 'tha', 'Thecc.01G335200' => 'tca', 'Thecc.01G377400' => 'tca', 'Thecc.03G262200' => 'tca', 'Thecc.05G036800' => 'tca', 'Thecc.10G080500' => 'tca', 'Thecc.10G080800' => 'tca', 'Thhalv10001560m.g' => 'esa', 'Thhalv10006120m.g' => 'esa', 'Thhalv10014375m.g' => 'esa', 'Thhalv10021264m.g' => 'esa', 'Thhalv10028856m.g' => 'esa', 'TPR.G1914' => 'tpr', 'TPR.G4757' => 'tpr', 'TPR.G5595' => 'tpr', 'TWI14G0952' => 'twi', 'TWI14G1307' => 'twi', 'TWI38G2143' => 'twi', 'TWI59G0826' => 'twi', 'TWI77G0527' => 'twi', 'TWI81G0150' => 'twi', 'unitig_21.g21018' => 'ugi', 'unitig_26.g9725' => 'ugi', 'unitig_744.g24653' => 'ugi', 'unitig_749.g13778' => 'ugi', 'unitig_899.g15035' => 'ugi', 'vmacro04296' => 'vma', 'vmacro04852' => 'vma', 'vmacro13404' => 'vma', 'vmacro20169' => 'vma', 'vmacro21014' => 'vma', 'VMungo0331G0237' => 'vmu', 'VMungo0331G0706' => 'vmu', 'VMungo0331G1361' => 'vmu', 'VMungo0331G1489' => 'vmu', 'VMungo0540G1037' => 'vmu', 'VMungo0720G2487' => 'vmu', 'VMungo0720G2721' => 'vmu', 'Zm00001eb086860' => 'zma', 'Zm00001eb104760' => 'zma', 'Zm00001eb148220' => 'zma', 'Zm00001eb259030' => 'zma', 'Zm00001eb289590' => 'zma', 'Zm00001eb420150' => 'zma' ) $gf_id = 'HOM05D000968' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000968' ) $data_identifier = 'HOM05D000968' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 19, 'bol' => (int) 9, 'bra' => (int) 12, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 5, 'ccan' => (int) 7, 'cde' => (int) 5, 'cfa' => (int) 8, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 4, 'dca' => (int) 5, 'din' => (int) 5, 'dzi' => (int) 12, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 25, 'fve' => (int) 5, 'gma' => (int) 9, 'ghi' => (int) 18, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 7, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 5, 'sun' => (int) 2, 'lal' => (int) 9, 'lja' => (int) 5, 'lonja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 9, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 2, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 3, 'stu' => (int) 6, 'pvu' => (int) 4, 'ptr' => (int) 8, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 3, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 1, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 5, 'sas' => (int) 5, 'shi' => (int) 6, 'smo' => (int) 6, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 3, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420150' $species_info = array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ) $local_species = 'camsi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000968', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p31690' => 'bna', 'A03p36040' => 'bna', 'A03p53730' => 'bna', 'A04p01410' => 'bna', 'A05p05420' => 'bna', 'A05p39630' => 'bna', 'A05p39640' => 'bna', 'A09p00970' => 'bna', 'A09p53060' => 'bna', 'A10p31890' => 'bna', 'Aa31LG10G15040' => 'aar', 'Aa31LG1G21090' => 'aar', 'Aa31LG1G26900' => 'aar', 'Aa31LG3G1820' => 'aar', 'Aa31LG5G1100' => 'aar', 'Aa31LG6G4740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2265' => 'aag', 'Actinidia07998' => 'ach', 'Actinidia11266' => 'ach', 'Actinidia12682' => 'ach', 'Actinidia26479' => 'ach', 'Actinidia31406' => 'ach', 'Actinidia32437' => 'ach', 'Actinidia38862' => 'ach', 'Ah.05g174230' => 'amhyb', 'Ah.05g179070' => 'amhyb', 'Ah.05g179090' => 'amhyb', 'Ah.12g059950' => 'amhyb', 'AL3G20480' => 'aly', 'AL4G44520' => 'aly', 'AL5G43110' => 'aly', 'AL6G13890' => 'aly', 'AL6G52620' => 'aly', 'AL7G30830' => 'aly', 'Aqoxy1G00899' => 'aox', 'Aqoxy5G04333' => 'aox', 'Aqoxy7G00641' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3IZ0NN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4EF6AW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W9P8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79GA3M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C43NQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFCU6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G95YVJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCHK29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LU1UG8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX91RN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGB4B1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8DA0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9H7JI' => 'arhy', 'AT3G09320' => 'ath', 'AT3G60800' => 'ath', 'AT4G00840' => 'ath', 'AT4G22750' => 'ath', 'AT5G04270' => 'ath', 'ATR0090G003' => 'atr', 'ATR0559G349' => 'atr', 'ATR0680G261' => 'atr', 'ATR0810G048' => 'atr', 'Atru.chr12.831' => 'acertr', 'Atru.chr5.303' => 'acertr', 'Atru.chr5.748' => 'acertr', 'Atru.chr8.1999' => 'acertr', 'Atru.chr9.1436' => 'acertr', 'AUR62004211' => 'cqu', 'AUR62004548' => 'cqu', 'AUR62013637' => 'cqu', 'AUR62022662' => 'cqu', 'AUR62025777' => 'cqu', 'AUR62042386' => 'cqu', 'BcaB01g02310' => 'bca', 'BcaB01g06062' => 'bca', 'BcaB02g08975' => 'bca', 'BcaB02g08980' => 'bca', 'BcaC01g04228' => 'bca', 'BcaC01g06830' => 'bca', 'BcaC02g10186' => 'bca', 'BcaC02g12214' => 'bca', 'BcaC04g24101' => 'bca', 'BcaC05g29520' => 'bca', 'BcaC05g29661' => 'bca', 'BcaC06g32130' => 'bca', 'BcaC06g32131' => 'bca', 'BcaC07g40601' => 'bca', 'BcaC07g42641' => 'bca', 'BcaNung01038' => 'bca', 'BcaNung01676' => 'bca', 'BcaNung02480' => 'bca', 'BcaNung07376' => 'bca', 'BolC3t16146H' => 'bol', 'BolC3t16637H' => 'bol', 'BolC4t22257H' => 'bol', 'BolC4t24728H' => 'bol', 'BolC5t34517H' => 'bol', 'BolC7t45703H' => 'bol', 'BolC8t51166H' => 'bol', 'BolC9t53038H' => 'bol', 'BolC9t60000H' => 'bol', 'BraA01t01345Z' => 'bra', 'BraA01t01346Z' => 'bra', 'BraA01t01348Z' => 'bra', 'BraA03t12347Z' => 'bra', 'BraA03t12775Z' => 'bra', 'BraA03t14439Z' => 'bra', 'BraA04t15860Z' => 'bra', 'BraA05t19511Z' => 'bra', 'BraA05t22746Z' => 'bra', 'BraA09t35767Z' => 'bra', 'BraA09t40732Z' => 'bra', 'BraA10t45233Z' => 'bra', 'C03p38720' => 'bna', 'C03p43680' => 'bna', 'C04p06350' => 'bna', 'C04p31800' => 'bna', 'C05p58680' => 'bna', 'C07p52110' => 'bna', 'C08p35760' => 'bna', 'C09p01050' => 'bna', 'C09p72600' => 'bna', 'CAN.G106.2' => 'can', 'CAN.G1482.1' => 'can', 'CAN.G324.12' => 'can', 'CAN.G388.20' => 'can', 'CAN.G412.7' => 'can', 'CAN.G694.32' => 'can', 'CAN.G92.12' => 'can', 'CANSAT11G2353' => 'cansat', 'CANSAT21G1398' => 'cansat', 'CANSAT56G2456' => 'cansat', 'CANSAT56G3031' => 'cansat', 'CANSAT56G4539' => 'cansat', 'CARHR083680' => 'chi', 'CARHR171190' => 'chi', 'CARHR209010' => 'chi', 'CARHR229680' => 'chi', 'CARHR249490' => 'chi', 'Carub.0003s0844' => 'cru', 'Carub.0005s2755' => 'cru', 'Carub.0006s0322' => 'cru', 'Carub.0006s3586' => 'cru', 'Carub.0007s1855' => 'cru', 'Ca_07808_v3' => 'car', 'Ca_09535_v3' => 'car', 'Ca_10548_v3' => 'car', 'Ca_19913_v3' => 'car', 'Ca_19916_v3' => 'car', 'Ca_19975_v3' => 'car', 'CBR_g22876' => 'cbr', 'CBR_g22879' => 'cbr', 'CBR_g38491' => 'cbr', 'CBR_g54185' => 'cbr', 'CBR_g54190' => 'cbr', 'Cc02_g11020' => 'ccan', 'Cc02_g23920' => 'ccan', 'Cc02_g39860' => 'ccan', 'Cc02_g39870' => 'ccan', 'Cc03_g06760' => 'ccan', 'Cc06_g02450' => 'ccan', 'Cc09_g09450' => 'ccan', 'CDE02G1959' => 'cde', 'CDE04G0600' => 'cde', 'CDE07G1996' => 'cde', 'CDE07G2078' => 'cde', 'CDE11G0611' => 'cde', 'Cfa001683' => 'cfa', 'Cfa001734' => 'cfa', 'Cfa001737' => 'cfa', 'Cfa003751' => 'cfa', 'Cfa012019' => 'cfa', 'Cfa017353' => 'cfa', 'Cfa017732' => 'cfa', 'Cfa022464' => 'cfa', 'Ciclev10012400m.g' => 'ccl', 'Ciclev10021242m.g' => 'ccl', 'Ciclev10021302m.g' => 'ccl', 'Ciclev10021463m.g' => 'ccl', 'Ciclev10032359m.g' => 'ccl', 'CiPaw.01G081000' => 'cil', 'CiPaw.01G262500' => 'cil', 'CiPaw.01G269800' => 'cil', 'CiPaw.02G168400' => 'cil', 'CiPaw.05G119500' => 'cil', 'CiPaw.11G147300' => 'cil', 'ClCG01G003630' => 'cla', 'ClCG05G000510' => 'cla', 'ClCG05G002300' => 'cla', 'ClCG08G007650' => 'cla', 'ClCG10G021250' => 'cla', 'COL.COLO4_06218' => 'col', 'COL.COLO4_12538' => 'col', 'COL.COLO4_14775' => 'col', 'COL.COLO4_23875' => 'col', 'Cpa.g.sc141.16' => 'cpa', 'Cpa.g.sc169.16' => 'cpa', 'Cpa.g.sc244.4' => 'cpa', 'Cpa.g.sc244.5' => 'cpa', 'Cpa.g.sc29.87' => 'cpa', 'Cpa.g.sc53.115' => 'cpa', 'Cre03.g207502' => 'cre', 'Cre06.g277000' => 'cre', 'Cre09.g394050' => 'cre', 'CsaV3_3G007680' => 'csa', 'CsaV3_3G009710' => 'csa', 'CsaV3_3G034790' => 'csa', 'CsaV3_5G003750' => 'csa', 'CsaV3_6G036620' => 'csa', 'CSS0002288' => 'camsi', 'CSS0011250' => 'camsi', 'CSS0021619' => 'camsi', 'CSS0046701' => 'camsi', 'DCAR_006420' => 'dca', 'DCAR_006865' => 'dca', 'DCAR_008558' => 'dca', 'DCAR_028754' => 'dca', 'DCAR_028755' => 'dca', 'Dinv31218' => 'din', 'Dinv32371' => 'din', 'Dinv34250' => 'din', 'Dinv37156' => 'din', 'Dinv43704' => 'din', 'Duzib093G1811' => 'dzi', 'Duzib106G1622' => 'dzi', 'Duzib114G0504' => 'dzi', 'Duzib128G0338' => 'dzi', 'Duzib128G1577' => 'dzi', 'Duzib133G0104' => 'dzi', 'Duzib133G1080' => 'dzi', 'Duzib138G0324' => 'dzi', 'Duzib138G0394' => 'dzi', 'Duzib205G0122' => 'dzi', 'Duzib268G1020' => 'dzi', 'Duzib268G1359' => 'dzi', 'ECA232G3929' => 'eca', 'ECA236G2210' => 'eca', 'ECA236G2287' => 'eca', 'ECA240G4568' => 'eca', 'ECA247G0894' => 'eca', 'EL10Ac1g00200' => 'bvu', 'EL10Ac1g00886' => 'bvu', 'EL10As1g23091' => 'bvu', 'EL10As1g23092' => 'bvu', 'Eucgr.A01284' => 'egr', 'Eucgr.A01285' => 'egr', 'Eucgr.D02456' => 'egr', 'Eucgr.E00018' => 'egr', 'Eucgr.E01439' => 'egr', 'Eucgr.G02859' => 'egr', 'FAN01G0168' => 'fan', 'FAN01G0453' => 'fan', 'FAN01G2761' => 'fan', 'FAN02G1239' => 'fan', 'FAN03G0645' => 'fan', 'FAN03G2707' => 'fan', 'FAN03G2978' => 'fan', 'FAN04G0227' => 'fan', 'FAN06G0091' => 'fan', 'FAN06G1418' => 'fan', 'FAN06G1512' => 'fan', 'FAN06G1986' => 'fan', 'FAN06G2905' => 'fan', 'FAN06G4325' => 'fan', 'FAN08G0033' => 'fan', 'FAN09G0642' => 'fan', 'FAN10G1763' => 'fan', 'FAN10G2026' => 'fan', 'FAN10G2513' => 'fan', 'FAN10G3402' => 'fan', 'FAN10G3564' => 'fan', 'FAN10G3987' => 'fan', 'FAN13G1490' => 'fan', 'FAN14G5857' => 'fan', 'FAN18G1188' => 'fan', 'FvH4_5g00750' => 'fve', 'FvH4_6g13410' => 'fve', 'FvH4_7g11740' => 'fve', 'FvH4_7g17410' => 'fve', 'FvH4_7g18860' => 'fve', 'Glyma.01G099100' => 'gma', 'Glyma.01G142300' => 'gma', 'Glyma.03G025500' => 'gma', 'Glyma.03G069700' => 'gma', 'Glyma.03G260000' => 'gma', 'Glyma.09G269800' => 'gma', 'Glyma.10G208700' => 'gma', 'Glyma.18G220400' => 'gma', 'Glyma.20G182000' => 'gma', 'Gohir.A01G221726' => 'ghi', 'Gohir.A07G134600' => 'ghi', 'Gohir.A07G146000' => 'ghi', 'Gohir.A08G173900' => 'ghi', 'Gohir.A09G194900' => 'ghi', 'Gohir.A10G204100' => 'ghi', 'Gohir.A11G080600' => 'ghi', 'Gohir.A11G327500' => 'ghi', 'Gohir.A12G101800' => 'ghi', 'Gohir.D01G211200' => 'ghi', 'Gohir.D07G139200' => 'ghi', 'Gohir.D07G152100' => 'ghi', 'Gohir.D08G192600' => 'ghi', 'Gohir.D09G189200' => 'ghi', 'Gohir.D10G212000' => 'ghi', 'Gohir.D11G085200' => 'ghi', 'Gohir.D11G346400' => 'ghi', 'Gohir.D12G104800' => 'ghi', 'Gorai.001G151300' => 'gra', 'Gorai.001G174100' => 'gra', 'Gorai.002G257000' => 'gra', 'Gorai.004G202600' => 'gra', 'Gorai.007G090900' => 'gra', 'Gorai.007G376700' => 'gra', 'Gorai.008G114100' => 'gra', 'Gorai.011G237900' => 'gra', 'GSVIVG01005450001' => 'vvi', 'GSVIVG01016232001' => 'vvi', 'GSVIVG01026157001' => 'vvi', 'GSVIVG01027419001' => 'vvi', 'GSVIVG01027631001' => 'vvi', 'GSVIVG01034143001' => 'vvi', 'HanXRQChr03g0093921' => 'han', 'HanXRQChr04g0120001' => 'han', 'HanXRQChr04g0122561' => 'han', 'HanXRQChr09g0246851' => 'han', 'HanXRQChr10g0293311' => 'han', 'HanXRQChr13g0425231' => 'han', 'HanXRQChr16g0532571' => 'han', 'Haze_09050' => 'cav', 'Haze_15715' => 'cav', 'Haze_15716' => 'cav', 'Haze_16803' => 'cav', 'Haze_16850' => 'cav', 'Hma1.2p1_0301F.1_g118655' => 'hma', 'Hma1.2p1_0309F.1_g120590' => 'hma', 'Hma1.2p1_0936F.1_g238900' => 'hma', 'Hma1.2p1_3552F.1_g336740' => 'hma', 'HPP92_003520' => 'vpl', 'HPP92_006628' => 'vpl', 'HPP92_006645' => 'vpl', 'HPP92_014669' => 'vpl', 'HPP92_015077' => 'vpl', 'Hund16742' => 'sun', 'Hund17022' => 'sun', 'Lalb_Chr02g0152131' => 'lal', 'Lalb_Chr05g0225371' => 'lal', 'Lalb_Chr07g0189841' => 'lal', 'Lalb_Chr07g0192961' => 'lal', 'Lalb_Chr12g0208221' => 'lal', 'Lalb_Chr13g0291211' => 'lal', 'Lalb_Chr13g0291781' => 'lal', 'Lalb_Chr18g0044651' => 'lal', 'Lalb_Chr21g0313731' => 'lal', 'Lj1g0022533' => 'lja', 'Lj2A18T50' => 'lonja', 'Lj2A92G93' => 'lonja', 'Lj3A965T73' => 'lonja', 'Lj3g0000673' => 'lja', 'Lj3g0002666' => 'lja', 'Lj4g0016985' => 'lja', 'Lj5g0003625' => 'lja', 'Lj7A529G36' => 'lonja', 'Lj9A569T49' => 'lonja', 'Lj9A604T63' => 'lonja', 'Lsat_1_v5_gn_3_132060' => 'lsa', 'Lsat_1_v5_gn_4_68941' => 'lsa', 'Lsat_1_v5_gn_5_95580' => 'lsa', 'Lsat_1_v5_gn_7_161' => 'lsa', 'Lsat_1_v5_gn_7_7041' => 'lsa', 'Lsat_1_v5_gn_9_33481' => 'lsa', 'Lsat_1_v5_gn_9_68260' => 'lsa', 'Manes.01G073100' => 'mes', 'Manes.01G266300' => 'mes', 'Manes.02G033300' => 'mes', 'Manes.05G017900' => 'mes', 'Manes.05G046100' => 'mes', 'Manes.08G080900' => 'mes', 'Manes.10G049400' => 'mes', 'Mapoly0009s0186' => 'mpo', 'Mapoly0036s0118' => 'mpo', 'Mapoly0101s0046' => 'mpo', 'MBI04_g30218_MAGBIO' => 'mbi', 'MBI04_g35564_MAGBIO' => 'mbi', 'MBI12_g34011_MAGBIO' => 'mbi', 'MBI14_g04655_MAGBIO' => 'mbi', 'MCO07G653' => 'mco', 'MCO10G173' => 'mco', 'MD01G1087100' => 'mdo', 'MD01G1104200' => 'mdo', 'MD02G1205100' => 'mdo', 'MD04G1079200' => 'mdo', 'MD04G1131400' => 'mdo', 'MD07G1121600' => 'mdo', 'MD07G1157300' => 'mdo', 'MD07G1171000' => 'mdo', 'MD12G1144500' => 'mdo', 'Medtr1g094610' => 'mtr', 'Medtr4g021795' => 'mtr', 'Medtr4g023760' => 'mtr', 'Medtr7g118050' => 'mtr', 'MELO3C005582.2' => 'cme', 'MELO3C005989.2' => 'cme', 'MELO3C006192.2' => 'cme', 'MELO3C009248.2' => 'cme', 'MELO3C019817.2' => 'cme', 'Migut.B01625' => 'egut', 'Migut.B01915' => 'egut', 'Migut.F01721' => 'egut', 'Migut.J00314' => 'egut', 'MSTRG.20742' => 'ama', 'MSTRG.8134' => 'ama', 'Nitab4.5_0000096g0010' => 'nta', 'Nitab4.5_0000202g0030' => 'nta', 'Nitab4.5_0000216g0370' => 'nta', 'Nitab4.5_0000457g0230' => 'nta', 'Nitab4.5_0001702g0170' => 'nta', 'Nitab4.5_0003607g0010' => 'nta', 'Nitab4.5_0004917g0020' => 'nta', 'Nitab4.5_0007059g0010' => 'nta', 'Nitab4.5_0007184g0010' => 'nta', 'Nitab4.5_0007346g0020' => 'nta', 'Nn1g00410' => 'nnu', 'Nn1g01252' => 'nnu', 'Nn2g11168' => 'nnu', 'Nn2g13403' => 'nnu', 'Nn2g13760' => 'nnu', 'Nn4g26380' => 'nnu', 'Oeu000806.2' => 'oeu', 'Oeu005788.1' => 'oeu', 'Oeu006900.3' => 'oeu', 'Oeu007797.1' => 'oeu', 'Oeu011932.1' => 'oeu', 'Oeu022739.1' => 'oeu', 'Oeu037918.1' => 'oeu', 'Oeu055490.2' => 'oeu', 'Os01g0844400' => 'osa', 'Os02g0819100' => 'osa', 'Os03g0804300' => 'osa', 'Os05g0458000' => 'osa', 'Os07g0467800' => 'osa', 'Os12g0602200' => 'osa', 'Peaxi162Scf00013g03444' => 'pax', 'Peaxi162Scf00094g01120' => 'pax', 'Peaxi162Scf00191g01211' => 'pax', 'Peaxi162Scf00238g01110' => 'pax', 'Peaxi162Scf00330g00719' => 'pax', 'Peaxi162Scf00627g00018' => 'pax', 'PGR031G2686' => 'pgr', 'PGR042G0809' => 'pgr', 'PGR142G0193' => 'pgr', 'PGSC0003DMG400011066' => 'stu', 'PGSC0003DMG400012041' => 'stu', 'PGSC0003DMG400013678' => 'stu', 'PGSC0003DMG400023477' => 'stu', 'PGSC0003DMG400025956' => 'stu', 'PGSC0003DMG401019151' => 'stu', 'Phvul.006G116400' => 'pvu', 'Phvul.007G097300' => 'pvu', 'Phvul.010G015000' => 'pvu', 'Phvul.010G083900' => 'pvu', 'Potri.001G117100' => 'ptr', 'Potri.002G147300' => 'ptr', 'Potri.003G115600' => 'ptr', 'Potri.006G087400' => 'ptr', 'Potri.010G226100' => 'ptr', 'Potri.014G069200' => 'ptr', 'Potri.014G104000' => 'ptr', 'Potri.016G100200' => 'ptr', 'Pp3c10_20450' => 'ppa', 'Pp3c1_42400' => 'ppa', 'Pp3c3_24390' => 'ppa', 'Pp3c3_2860' => 'ppa', 'PRCOL_00003193' => 'pco', 'Prupe.2G144500' => 'ppe', 'Prupe.2G195700' => 'ppe', 'Prupe.2G209800' => 'ppe', 'Prupe.5G080000' => 'ppe', 'Prupe.6G257900' => 'ppe', 'Psat3g001160' => 'psa', 'Psat6g181880' => 'psa', 'Psat7g233720' => 'psa', 'PSO063G7587' => 'pso', 'PSO339G2145' => 'pso', 'PSO339G3369' => 'pso', 'PSO478G2747' => 'pso', 'PSO513G0140' => 'pso', 'PSO782G1614' => 'pso', 'PSO782G4889' => 'pso', 'PSO782G5485' => 'pso', 'PSO801G0241' => 'pso', 'QL07p048854' => 'qlo', 'QL08p046745' => 'qlo', 'QL08p052606' => 'qlo', 'QL08p053414' => 'qlo', 'QL08p054868' => 'qlo', 'RcHm_v2.0_Chr1g0350251' => 'rch', 'RcHm_v2.0_Chr1g0360851' => 'rch', 'RcHm_v2.0_Chr1g0362791' => 'rch', 'RcHm_v2.0_Chr3g0466281' => 'rch', 'RcHm_v2.0_Chr7g0201481' => 'rch', 'Rhsim01G0148600' => 'rsi', 'Rhsim05G0194400' => 'rsi', 'Rhsim07G0000700' => 'rsi', 'Rhsim07G0000800' => 'rsi', 'Rhsim07G0027900' => 'rsi', 'Rhsim09G0149500' => 'rsi', 'RhsimUnG0186900' => 'rsi', 'Sabra01G0089900' => 'sbr', 'Sabra02G0114700' => 'sbr', 'Sabra02G0116300' => 'sbr', 'Sabra03G0080100' => 'sbr', 'Sabra08G0024300' => 'sbr', 'Sabra10G0174300' => 'sbr', 'Sabra14G0048900' => 'sbr', 'Sabra14G0076500' => 'sbr', 'SalBow5G2513' => 'sbo', 'Sc01g0002300' => 'sci', 'Sc01g0004450' => 'sci', 'Sc06g0001680' => 'sci', 'Sc23g0003580' => 'sci', 'Sed0000913' => 'sed', 'Sed0001655' => 'sed', 'Sed0007745' => 'sed', 'Sed0010951' => 'sed', 'Sed0017599' => 'sed', 'Sed0021405' => 'sed', 'Sed0022810' => 'sed', 'SEGI_07099' => 'sgi', 'SEGI_11931' => 'sgi', 'SEGI_13187' => 'sgi', 'SEGI_29958' => 'sgi', 'SEGI_36351' => 'sgi', 'SGA_v2.0_scaffold126G33770' => 'sas', 'SGA_v2.0_scaffold153G37003' => 'sas', 'SGA_v2.0_scaffold2G01359' => 'sas', 'SGA_v2.0_scaffold5G03064' => 'sas', 'SGA_v2.0_scaffold95G28903' => 'sas', 'SHI12701' => 'shi', 'SHI26410' => 'shi', 'SHI38997' => 'shi', 'SHI53759' => 'shi', 'SHI53886' => 'shi', 'SHI54714' => 'shi', 'SMO011G0041' => 'smo', 'SMO146G0251' => 'smo', 'SMO160G0004' => 'smo', 'SMO174G0057' => 'smo', 'SMO244G0089' => 'smo', 'SMO296G0011' => 'smo', 'Solyc01g091280.3' => 'sly', 'Solyc05g047610.3' => 'sly', 'Solyc05g047640.3' => 'sly', 'Solyc05g055630.3' => 'sly', 'Solyc10g018160.2' => 'sly', 'Solyc10g084820.2' => 'sly', 'Solyc10g086565.2' => 'sly', 'Sopen01g037030' => 'spe', 'Sopen05g027920' => 'spe', 'Sopen05g034070' => 'spe', 'Sopen10g007260' => 'spe', 'Sopen10g034260' => 'spe', 'Sopen10g035950' => 'spe', 'Sp3g07710' => 'spa', 'Sp4g27420' => 'spa', 'Sp5g02450' => 'spa', 'Sp6g01280' => 'spa', 'Sp6g38480' => 'spa', 'Sp7g20780' => 'spa', 'TAR374G1413' => 'tar', 'TAR623G1777' => 'tar', 'TAR629G2370' => 'tar', 'TAR633G1759' => 'tar', 'TAR636G3387' => 'tar', 'THA.LOC104802447' => 'tha', 'THA.LOC104813916' => 'tha', 'THA.LOC104816423' => 'tha', 'THA.LOC104817246' => 'tha', 'THA.LOC104825895' => 'tha', 'Thecc.01G335200' => 'tca', 'Thecc.01G377400' => 'tca', 'Thecc.03G262200' => 'tca', 'Thecc.05G036800' => 'tca', 'Thecc.10G080500' => 'tca', 'Thecc.10G080800' => 'tca', 'Thhalv10001560m.g' => 'esa', 'Thhalv10006120m.g' => 'esa', 'Thhalv10014375m.g' => 'esa', 'Thhalv10021264m.g' => 'esa', 'Thhalv10028856m.g' => 'esa', 'TPR.G1914' => 'tpr', 'TPR.G4757' => 'tpr', 'TPR.G5595' => 'tpr', 'TWI14G0952' => 'twi', 'TWI14G1307' => 'twi', 'TWI38G2143' => 'twi', 'TWI59G0826' => 'twi', 'TWI77G0527' => 'twi', 'TWI81G0150' => 'twi', 'unitig_21.g21018' => 'ugi', 'unitig_26.g9725' => 'ugi', 'unitig_744.g24653' => 'ugi', 'unitig_749.g13778' => 'ugi', 'unitig_899.g15035' => 'ugi', 'vmacro04296' => 'vma', 'vmacro04852' => 'vma', 'vmacro13404' => 'vma', 'vmacro20169' => 'vma', 'vmacro21014' => 'vma', 'VMungo0331G0237' => 'vmu', 'VMungo0331G0706' => 'vmu', 'VMungo0331G1361' => 'vmu', 'VMungo0331G1489' => 'vmu', 'VMungo0540G1037' => 'vmu', 'VMungo0720G2487' => 'vmu', 'VMungo0720G2721' => 'vmu', 'Zm00001eb086860' => 'zma', 'Zm00001eb104760' => 'zma', 'Zm00001eb148220' => 'zma', 'Zm00001eb259030' => 'zma', 'Zm00001eb289590' => 'zma', 'Zm00001eb420150' => 'zma' ), 'gf_id' => 'HOM05D000968', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000968' ), 'data_identifier' => 'HOM05D000968', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000968', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p31690' => 'bna', 'A03p36040' => 'bna', 'A03p53730' => 'bna', 'A04p01410' => 'bna', 'A05p05420' => 'bna', 'A05p39630' => 'bna', 'A05p39640' => 'bna', 'A09p00970' => 'bna', 'A09p53060' => 'bna', 'A10p31890' => 'bna', 'Aa31LG10G15040' => 'aar', 'Aa31LG1G21090' => 'aar', 'Aa31LG1G26900' => 'aar', 'Aa31LG3G1820' => 'aar', 'Aa31LG5G1100' => 'aar', 'Aa31LG6G4740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2265' => 'aag', 'Actinidia07998' => 'ach', 'Actinidia11266' => 'ach', 'Actinidia12682' => 'ach', 'Actinidia26479' => 'ach', 'Actinidia31406' => 'ach', 'Actinidia32437' => 'ach', 'Actinidia38862' => 'ach', 'Ah.05g174230' => 'amhyb', 'Ah.05g179070' => 'amhyb', 'Ah.05g179090' => 'amhyb', 'Ah.12g059950' => 'amhyb', 'AL3G20480' => 'aly', 'AL4G44520' => 'aly', 'AL5G43110' => 'aly', 'AL6G13890' => 'aly', 'AL6G52620' => 'aly', 'AL7G30830' => 'aly', 'Aqoxy1G00899' => 'aox', 'Aqoxy5G04333' => 'aox', 'Aqoxy7G00641' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3IZ0NN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4EF6AW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W9P8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79GA3M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C43NQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFCU6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G95YVJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCHK29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LU1UG8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX91RN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGB4B1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8DA0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9H7JI' => 'arhy', 'AT3G09320' => 'ath', 'AT3G60800' => 'ath', 'AT4G00840' => 'ath', 'AT4G22750' => 'ath', 'AT5G04270' => 'ath', 'ATR0090G003' => 'atr', 'ATR0559G349' => 'atr', 'ATR0680G261' => 'atr', 'ATR0810G048' => 'atr', 'Atru.chr12.831' => 'acertr', 'Atru.chr5.303' => 'acertr', 'Atru.chr5.748' => 'acertr', 'Atru.chr8.1999' => 'acertr', 'Atru.chr9.1436' => 'acertr', 'AUR62004211' => 'cqu', 'AUR62004548' => 'cqu', 'AUR62013637' => 'cqu', 'AUR62022662' => 'cqu', 'AUR62025777' => 'cqu', 'AUR62042386' => 'cqu', 'BcaB01g02310' => 'bca', 'BcaB01g06062' => 'bca', 'BcaB02g08975' => 'bca', 'BcaB02g08980' => 'bca', 'BcaC01g04228' => 'bca', 'BcaC01g06830' => 'bca', 'BcaC02g10186' => 'bca', 'BcaC02g12214' => 'bca', 'BcaC04g24101' => 'bca', 'BcaC05g29520' => 'bca', 'BcaC05g29661' => 'bca', 'BcaC06g32130' => 'bca', 'BcaC06g32131' => 'bca', 'BcaC07g40601' => 'bca', 'BcaC07g42641' => 'bca', 'BcaNung01038' => 'bca', 'BcaNung01676' => 'bca', 'BcaNung02480' => 'bca', 'BcaNung07376' => 'bca', 'BolC3t16146H' => 'bol', 'BolC3t16637H' => 'bol', 'BolC4t22257H' => 'bol', 'BolC4t24728H' => 'bol', 'BolC5t34517H' => 'bol', 'BolC7t45703H' => 'bol', 'BolC8t51166H' => 'bol', 'BolC9t53038H' => 'bol', 'BolC9t60000H' => 'bol', 'BraA01t01345Z' => 'bra', 'BraA01t01346Z' => 'bra', 'BraA01t01348Z' => 'bra', 'BraA03t12347Z' => 'bra', 'BraA03t12775Z' => 'bra', 'BraA03t14439Z' => 'bra', 'BraA04t15860Z' => 'bra', 'BraA05t19511Z' => 'bra', 'BraA05t22746Z' => 'bra', 'BraA09t35767Z' => 'bra', 'BraA09t40732Z' => 'bra', 'BraA10t45233Z' => 'bra', 'C03p38720' => 'bna', 'C03p43680' => 'bna', 'C04p06350' => 'bna', 'C04p31800' => 'bna', 'C05p58680' => 'bna', 'C07p52110' => 'bna', 'C08p35760' => 'bna', 'C09p01050' => 'bna', 'C09p72600' => 'bna', 'CAN.G106.2' => 'can', 'CAN.G1482.1' => 'can', 'CAN.G324.12' => 'can', 'CAN.G388.20' => 'can', 'CAN.G412.7' => 'can', 'CAN.G694.32' => 'can', 'CAN.G92.12' => 'can', 'CANSAT11G2353' => 'cansat', 'CANSAT21G1398' => 'cansat', 'CANSAT56G2456' => 'cansat', 'CANSAT56G3031' => 'cansat', 'CANSAT56G4539' => 'cansat', 'CARHR083680' => 'chi', 'CARHR171190' => 'chi', 'CARHR209010' => 'chi', 'CARHR229680' => 'chi', 'CARHR249490' => 'chi', 'Carub.0003s0844' => 'cru', 'Carub.0005s2755' => 'cru', 'Carub.0006s0322' => 'cru', 'Carub.0006s3586' => 'cru', 'Carub.0007s1855' => 'cru', 'Ca_07808_v3' => 'car', 'Ca_09535_v3' => 'car', 'Ca_10548_v3' => 'car', 'Ca_19913_v3' => 'car', 'Ca_19916_v3' => 'car', 'Ca_19975_v3' => 'car', 'CBR_g22876' => 'cbr', 'CBR_g22879' => 'cbr', 'CBR_g38491' => 'cbr', 'CBR_g54185' => 'cbr', 'CBR_g54190' => 'cbr', 'Cc02_g11020' => 'ccan', 'Cc02_g23920' => 'ccan', 'Cc02_g39860' => 'ccan', 'Cc02_g39870' => 'ccan', 'Cc03_g06760' => 'ccan', 'Cc06_g02450' => 'ccan', 'Cc09_g09450' => 'ccan', 'CDE02G1959' => 'cde', 'CDE04G0600' => 'cde', 'CDE07G1996' => 'cde', 'CDE07G2078' => 'cde', 'CDE11G0611' => 'cde', 'Cfa001683' => 'cfa', 'Cfa001734' => 'cfa', 'Cfa001737' => 'cfa', 'Cfa003751' => 'cfa', 'Cfa012019' => 'cfa', 'Cfa017353' => 'cfa', 'Cfa017732' => 'cfa', 'Cfa022464' => 'cfa', 'Ciclev10012400m.g' => 'ccl', 'Ciclev10021242m.g' => 'ccl', 'Ciclev10021302m.g' => 'ccl', 'Ciclev10021463m.g' => 'ccl', 'Ciclev10032359m.g' => 'ccl', 'CiPaw.01G081000' => 'cil', 'CiPaw.01G262500' => 'cil', 'CiPaw.01G269800' => 'cil', 'CiPaw.02G168400' => 'cil', 'CiPaw.05G119500' => 'cil', 'CiPaw.11G147300' => 'cil', 'ClCG01G003630' => 'cla', 'ClCG05G000510' => 'cla', 'ClCG05G002300' => 'cla', 'ClCG08G007650' => 'cla', 'ClCG10G021250' => 'cla', 'COL.COLO4_06218' => 'col', 'COL.COLO4_12538' => 'col', 'COL.COLO4_14775' => 'col', 'COL.COLO4_23875' => 'col', 'Cpa.g.sc141.16' => 'cpa', 'Cpa.g.sc169.16' => 'cpa', 'Cpa.g.sc244.4' => 'cpa', 'Cpa.g.sc244.5' => 'cpa', 'Cpa.g.sc29.87' => 'cpa', 'Cpa.g.sc53.115' => 'cpa', 'Cre03.g207502' => 'cre', 'Cre06.g277000' => 'cre', 'Cre09.g394050' => 'cre', 'CsaV3_3G007680' => 'csa', 'CsaV3_3G009710' => 'csa', 'CsaV3_3G034790' => 'csa', 'CsaV3_5G003750' => 'csa', 'CsaV3_6G036620' => 'csa', 'CSS0002288' => 'camsi', 'CSS0011250' => 'camsi', 'CSS0021619' => 'camsi', 'CSS0046701' => 'camsi', 'DCAR_006420' => 'dca', 'DCAR_006865' => 'dca', 'DCAR_008558' => 'dca', 'DCAR_028754' => 'dca', 'DCAR_028755' => 'dca', 'Dinv31218' => 'din', 'Dinv32371' => 'din', 'Dinv34250' => 'din', 'Dinv37156' => 'din', 'Dinv43704' => 'din', 'Duzib093G1811' => 'dzi', 'Duzib106G1622' => 'dzi', 'Duzib114G0504' => 'dzi', 'Duzib128G0338' => 'dzi', 'Duzib128G1577' => 'dzi', 'Duzib133G0104' => 'dzi', 'Duzib133G1080' => 'dzi', 'Duzib138G0324' => 'dzi', 'Duzib138G0394' => 'dzi', 'Duzib205G0122' => 'dzi', 'Duzib268G1020' => 'dzi', 'Duzib268G1359' => 'dzi', 'ECA232G3929' => 'eca', 'ECA236G2210' => 'eca', 'ECA236G2287' => 'eca', 'ECA240G4568' => 'eca', 'ECA247G0894' => 'eca', 'EL10Ac1g00200' => 'bvu', 'EL10Ac1g00886' => 'bvu', 'EL10As1g23091' => 'bvu', 'EL10As1g23092' => 'bvu', 'Eucgr.A01284' => 'egr', 'Eucgr.A01285' => 'egr', 'Eucgr.D02456' => 'egr', 'Eucgr.E00018' => 'egr', 'Eucgr.E01439' => 'egr', 'Eucgr.G02859' => 'egr', 'FAN01G0168' => 'fan', 'FAN01G0453' => 'fan', 'FAN01G2761' => 'fan', 'FAN02G1239' => 'fan', 'FAN03G0645' => 'fan', 'FAN03G2707' => 'fan', 'FAN03G2978' => 'fan', 'FAN04G0227' => 'fan', 'FAN06G0091' => 'fan', 'FAN06G1418' => 'fan', 'FAN06G1512' => 'fan', 'FAN06G1986' => 'fan', 'FAN06G2905' => 'fan', 'FAN06G4325' => 'fan', 'FAN08G0033' => 'fan', 'FAN09G0642' => 'fan', 'FAN10G1763' => 'fan', 'FAN10G2026' => 'fan', 'FAN10G2513' => 'fan', 'FAN10G3402' => 'fan', 'FAN10G3564' => 'fan', 'FAN10G3987' => 'fan', 'FAN13G1490' => 'fan', 'FAN14G5857' => 'fan', 'FAN18G1188' => 'fan', 'FvH4_5g00750' => 'fve', 'FvH4_6g13410' => 'fve', 'FvH4_7g11740' => 'fve', 'FvH4_7g17410' => 'fve', 'FvH4_7g18860' => 'fve', 'Glyma.01G099100' => 'gma', 'Glyma.01G142300' => 'gma', 'Glyma.03G025500' => 'gma', 'Glyma.03G069700' => 'gma', 'Glyma.03G260000' => 'gma', 'Glyma.09G269800' => 'gma', 'Glyma.10G208700' => 'gma', 'Glyma.18G220400' => 'gma', 'Glyma.20G182000' => 'gma', 'Gohir.A01G221726' => 'ghi', 'Gohir.A07G134600' => 'ghi', 'Gohir.A07G146000' => 'ghi', 'Gohir.A08G173900' => 'ghi', 'Gohir.A09G194900' => 'ghi', 'Gohir.A10G204100' => 'ghi', 'Gohir.A11G080600' => 'ghi', 'Gohir.A11G327500' => 'ghi', 'Gohir.A12G101800' => 'ghi', 'Gohir.D01G211200' => 'ghi', 'Gohir.D07G139200' => 'ghi', 'Gohir.D07G152100' => 'ghi', 'Gohir.D08G192600' => 'ghi', 'Gohir.D09G189200' => 'ghi', 'Gohir.D10G212000' => 'ghi', 'Gohir.D11G085200' => 'ghi', 'Gohir.D11G346400' => 'ghi', 'Gohir.D12G104800' => 'ghi', 'Gorai.001G151300' => 'gra', 'Gorai.001G174100' => 'gra', 'Gorai.002G257000' => 'gra', 'Gorai.004G202600' => 'gra', 'Gorai.007G090900' => 'gra', 'Gorai.007G376700' => 'gra', 'Gorai.008G114100' => 'gra', 'Gorai.011G237900' => 'gra', 'GSVIVG01005450001' => 'vvi', 'GSVIVG01016232001' => 'vvi', 'GSVIVG01026157001' => 'vvi', 'GSVIVG01027419001' => 'vvi', 'GSVIVG01027631001' => 'vvi', 'GSVIVG01034143001' => 'vvi', 'HanXRQChr03g0093921' => 'han', 'HanXRQChr04g0120001' => 'han', 'HanXRQChr04g0122561' => 'han', 'HanXRQChr09g0246851' => 'han', 'HanXRQChr10g0293311' => 'han', 'HanXRQChr13g0425231' => 'han', 'HanXRQChr16g0532571' => 'han', 'Haze_09050' => 'cav', 'Haze_15715' => 'cav', 'Haze_15716' => 'cav', 'Haze_16803' => 'cav', 'Haze_16850' => 'cav', 'Hma1.2p1_0301F.1_g118655' => 'hma', 'Hma1.2p1_0309F.1_g120590' => 'hma', 'Hma1.2p1_0936F.1_g238900' => 'hma', 'Hma1.2p1_3552F.1_g336740' => 'hma', 'HPP92_003520' => 'vpl', 'HPP92_006628' => 'vpl', 'HPP92_006645' => 'vpl', 'HPP92_014669' => 'vpl', 'HPP92_015077' => 'vpl', 'Hund16742' => 'sun', 'Hund17022' => 'sun', 'Lalb_Chr02g0152131' => 'lal', 'Lalb_Chr05g0225371' => 'lal', 'Lalb_Chr07g0189841' => 'lal', 'Lalb_Chr07g0192961' => 'lal', 'Lalb_Chr12g0208221' => 'lal', 'Lalb_Chr13g0291211' => 'lal', 'Lalb_Chr13g0291781' => 'lal', 'Lalb_Chr18g0044651' => 'lal', 'Lalb_Chr21g0313731' => 'lal', 'Lj1g0022533' => 'lja', 'Lj2A18T50' => 'lonja', 'Lj2A92G93' => 'lonja', 'Lj3A965T73' => 'lonja', 'Lj3g0000673' => 'lja', 'Lj3g0002666' => 'lja', 'Lj4g0016985' => 'lja', 'Lj5g0003625' => 'lja', 'Lj7A529G36' => 'lonja', 'Lj9A569T49' => 'lonja', 'Lj9A604T63' => 'lonja', 'Lsat_1_v5_gn_3_132060' => 'lsa', 'Lsat_1_v5_gn_4_68941' => 'lsa', 'Lsat_1_v5_gn_5_95580' => 'lsa', 'Lsat_1_v5_gn_7_161' => 'lsa', 'Lsat_1_v5_gn_7_7041' => 'lsa', 'Lsat_1_v5_gn_9_33481' => 'lsa', 'Lsat_1_v5_gn_9_68260' => 'lsa', 'Manes.01G073100' => 'mes', 'Manes.01G266300' => 'mes', 'Manes.02G033300' => 'mes', 'Manes.05G017900' => 'mes', 'Manes.05G046100' => 'mes', 'Manes.08G080900' => 'mes', 'Manes.10G049400' => 'mes', 'Mapoly0009s0186' => 'mpo', 'Mapoly0036s0118' => 'mpo', 'Mapoly0101s0046' => 'mpo', 'MBI04_g30218_MAGBIO' => 'mbi', 'MBI04_g35564_MAGBIO' => 'mbi', 'MBI12_g34011_MAGBIO' => 'mbi', 'MBI14_g04655_MAGBIO' => 'mbi', 'MCO07G653' => 'mco', 'MCO10G173' => 'mco', 'MD01G1087100' => 'mdo', 'MD01G1104200' => 'mdo', 'MD02G1205100' => 'mdo', 'MD04G1079200' => 'mdo', 'MD04G1131400' => 'mdo', 'MD07G1121600' => 'mdo', 'MD07G1157300' => 'mdo', 'MD07G1171000' => 'mdo', 'MD12G1144500' => 'mdo', 'Medtr1g094610' => 'mtr', 'Medtr4g021795' => 'mtr', 'Medtr4g023760' => 'mtr', 'Medtr7g118050' => 'mtr', 'MELO3C005582.2' => 'cme', 'MELO3C005989.2' => 'cme', 'MELO3C006192.2' => 'cme', 'MELO3C009248.2' => 'cme', 'MELO3C019817.2' => 'cme', 'Migut.B01625' => 'egut', 'Migut.B01915' => 'egut', 'Migut.F01721' => 'egut', 'Migut.J00314' => 'egut', 'MSTRG.20742' => 'ama', 'MSTRG.8134' => 'ama', 'Nitab4.5_0000096g0010' => 'nta', 'Nitab4.5_0000202g0030' => 'nta', 'Nitab4.5_0000216g0370' => 'nta', 'Nitab4.5_0000457g0230' => 'nta', 'Nitab4.5_0001702g0170' => 'nta', 'Nitab4.5_0003607g0010' => 'nta', 'Nitab4.5_0004917g0020' => 'nta', 'Nitab4.5_0007059g0010' => 'nta', 'Nitab4.5_0007184g0010' => 'nta', 'Nitab4.5_0007346g0020' => 'nta', 'Nn1g00410' => 'nnu', 'Nn1g01252' => 'nnu', 'Nn2g11168' => 'nnu', 'Nn2g13403' => 'nnu', 'Nn2g13760' => 'nnu', 'Nn4g26380' => 'nnu', 'Oeu000806.2' => 'oeu', 'Oeu005788.1' => 'oeu', 'Oeu006900.3' => 'oeu', 'Oeu007797.1' => 'oeu', 'Oeu011932.1' => 'oeu', 'Oeu022739.1' => 'oeu', 'Oeu037918.1' => 'oeu', 'Oeu055490.2' => 'oeu', 'Os01g0844400' => 'osa', 'Os02g0819100' => 'osa', 'Os03g0804300' => 'osa', 'Os05g0458000' => 'osa', 'Os07g0467800' => 'osa', 'Os12g0602200' => 'osa', 'Peaxi162Scf00013g03444' => 'pax', 'Peaxi162Scf00094g01120' => 'pax', 'Peaxi162Scf00191g01211' => 'pax', 'Peaxi162Scf00238g01110' => 'pax', 'Peaxi162Scf00330g00719' => 'pax', 'Peaxi162Scf00627g00018' => 'pax', 'PGR031G2686' => 'pgr', 'PGR042G0809' => 'pgr', 'PGR142G0193' => 'pgr', 'PGSC0003DMG400011066' => 'stu', 'PGSC0003DMG400012041' => 'stu', 'PGSC0003DMG400013678' => 'stu', 'PGSC0003DMG400023477' => 'stu', 'PGSC0003DMG400025956' => 'stu', 'PGSC0003DMG401019151' => 'stu', 'Phvul.006G116400' => 'pvu', 'Phvul.007G097300' => 'pvu', 'Phvul.010G015000' => 'pvu', 'Phvul.010G083900' => 'pvu', 'Potri.001G117100' => 'ptr', 'Potri.002G147300' => 'ptr', 'Potri.003G115600' => 'ptr', 'Potri.006G087400' => 'ptr', 'Potri.010G226100' => 'ptr', 'Potri.014G069200' => 'ptr', 'Potri.014G104000' => 'ptr', 'Potri.016G100200' => 'ptr', 'Pp3c10_20450' => 'ppa', 'Pp3c1_42400' => 'ppa', 'Pp3c3_24390' => 'ppa', 'Pp3c3_2860' => 'ppa', 'PRCOL_00003193' => 'pco', 'Prupe.2G144500' => 'ppe', 'Prupe.2G195700' => 'ppe', 'Prupe.2G209800' => 'ppe', 'Prupe.5G080000' => 'ppe', 'Prupe.6G257900' => 'ppe', 'Psat3g001160' => 'psa', 'Psat6g181880' => 'psa', 'Psat7g233720' => 'psa', 'PSO063G7587' => 'pso', 'PSO339G2145' => 'pso', 'PSO339G3369' => 'pso', 'PSO478G2747' => 'pso', 'PSO513G0140' => 'pso', 'PSO782G1614' => 'pso', 'PSO782G4889' => 'pso', 'PSO782G5485' => 'pso', 'PSO801G0241' => 'pso', 'QL07p048854' => 'qlo', 'QL08p046745' => 'qlo', 'QL08p052606' => 'qlo', 'QL08p053414' => 'qlo', 'QL08p054868' => 'qlo', 'RcHm_v2.0_Chr1g0350251' => 'rch', 'RcHm_v2.0_Chr1g0360851' => 'rch', 'RcHm_v2.0_Chr1g0362791' => 'rch', 'RcHm_v2.0_Chr3g0466281' => 'rch', 'RcHm_v2.0_Chr7g0201481' => 'rch', 'Rhsim01G0148600' => 'rsi', 'Rhsim05G0194400' => 'rsi', 'Rhsim07G0000700' => 'rsi', 'Rhsim07G0000800' => 'rsi', 'Rhsim07G0027900' => 'rsi', 'Rhsim09G0149500' => 'rsi', 'RhsimUnG0186900' => 'rsi', 'Sabra01G0089900' => 'sbr', 'Sabra02G0114700' => 'sbr', 'Sabra02G0116300' => 'sbr', 'Sabra03G0080100' => 'sbr', 'Sabra08G0024300' => 'sbr', 'Sabra10G0174300' => 'sbr', 'Sabra14G0048900' => 'sbr', 'Sabra14G0076500' => 'sbr', 'SalBow5G2513' => 'sbo', 'Sc01g0002300' => 'sci', 'Sc01g0004450' => 'sci', 'Sc06g0001680' => 'sci', 'Sc23g0003580' => 'sci', 'Sed0000913' => 'sed', 'Sed0001655' => 'sed', 'Sed0007745' => 'sed', 'Sed0010951' => 'sed', 'Sed0017599' => 'sed', 'Sed0021405' => 'sed', 'Sed0022810' => 'sed', 'SEGI_07099' => 'sgi', 'SEGI_11931' => 'sgi', 'SEGI_13187' => 'sgi', 'SEGI_29958' => 'sgi', 'SEGI_36351' => 'sgi', 'SGA_v2.0_scaffold126G33770' => 'sas', 'SGA_v2.0_scaffold153G37003' => 'sas', 'SGA_v2.0_scaffold2G01359' => 'sas', 'SGA_v2.0_scaffold5G03064' => 'sas', 'SGA_v2.0_scaffold95G28903' => 'sas', 'SHI12701' => 'shi', 'SHI26410' => 'shi', 'SHI38997' => 'shi', 'SHI53759' => 'shi', 'SHI53886' => 'shi', 'SHI54714' => 'shi', 'SMO011G0041' => 'smo', 'SMO146G0251' => 'smo', 'SMO160G0004' => 'smo', 'SMO174G0057' => 'smo', 'SMO244G0089' => 'smo', 'SMO296G0011' => 'smo', 'Solyc01g091280.3' => 'sly', 'Solyc05g047610.3' => 'sly', 'Solyc05g047640.3' => 'sly', 'Solyc05g055630.3' => 'sly', 'Solyc10g018160.2' => 'sly', 'Solyc10g084820.2' => 'sly', 'Solyc10g086565.2' => 'sly', 'Sopen01g037030' => 'spe', 'Sopen05g027920' => 'spe', 'Sopen05g034070' => 'spe', 'Sopen10g007260' => 'spe', 'Sopen10g034260' => 'spe', 'Sopen10g035950' => 'spe', 'Sp3g07710' => 'spa', 'Sp4g27420' => 'spa', 'Sp5g02450' => 'spa', 'Sp6g01280' => 'spa', 'Sp6g38480' => 'spa', 'Sp7g20780' => 'spa', 'TAR374G1413' => 'tar', 'TAR623G1777' => 'tar', 'TAR629G2370' => 'tar', 'TAR633G1759' => 'tar', 'TAR636G3387' => 'tar', 'THA.LOC104802447' => 'tha', 'THA.LOC104813916' => 'tha', 'THA.LOC104816423' => 'tha', 'THA.LOC104817246' => 'tha', 'THA.LOC104825895' => 'tha', 'Thecc.01G335200' => 'tca', 'Thecc.01G377400' => 'tca', 'Thecc.03G262200' => 'tca', 'Thecc.05G036800' => 'tca', 'Thecc.10G080500' => 'tca', 'Thecc.10G080800' => 'tca', 'Thhalv10001560m.g' => 'esa', 'Thhalv10006120m.g' => 'esa', 'Thhalv10014375m.g' => 'esa', 'Thhalv10021264m.g' => 'esa', 'Thhalv10028856m.g' => 'esa', 'TPR.G1914' => 'tpr', 'TPR.G4757' => 'tpr', 'TPR.G5595' => 'tpr', 'TWI14G0952' => 'twi', 'TWI14G1307' => 'twi', 'TWI38G2143' => 'twi', 'TWI59G0826' => 'twi', 'TWI77G0527' => 'twi', 'TWI81G0150' => 'twi', 'unitig_21.g21018' => 'ugi', 'unitig_26.g9725' => 'ugi', 'unitig_744.g24653' => 'ugi', 'unitig_749.g13778' => 'ugi', 'unitig_899.g15035' => 'ugi', 'vmacro04296' => 'vma', 'vmacro04852' => 'vma', 'vmacro13404' => 'vma', 'vmacro20169' => 'vma', 'vmacro21014' => 'vma', 'VMungo0331G0237' => 'vmu', 'VMungo0331G0706' => 'vmu', 'VMungo0331G1361' => 'vmu', 'VMungo0331G1489' => 'vmu', 'VMungo0540G1037' => 'vmu', 'VMungo0720G2487' => 'vmu', 'VMungo0720G2721' => 'vmu', 'Zm00001eb086860' => 'zma', 'Zm00001eb104760' => 'zma', 'Zm00001eb148220' => 'zma', 'Zm00001eb259030' => 'zma', 'Zm00001eb289590' => 'zma', 'Zm00001eb420150' => 'zma' ) $gf_id = 'HOM05D000968' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000968' ) $data_identifier = 'HOM05D000968' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 19, 'bol' => (int) 9, 'bra' => (int) 12, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 5, 'ccan' => (int) 7, 'cde' => (int) 5, 'cfa' => (int) 8, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 4, 'dca' => (int) 5, 'din' => (int) 5, 'dzi' => (int) 12, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 25, 'fve' => (int) 5, 'gma' => (int) 9, 'ghi' => (int) 18, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 7, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 5, 'sun' => (int) 2, 'lal' => (int) 9, 'lja' => (int) 5, 'lonja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 9, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 2, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 3, 'stu' => (int) 6, 'pvu' => (int) 4, 'ptr' => (int) 8, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 3, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 1, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 5, 'sas' => (int) 5, 'shi' => (int) 6, 'smo' => (int) 6, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 3, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420150' $species_info = array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ) $local_species = 'cansat' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000968', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p31690' => 'bna', 'A03p36040' => 'bna', 'A03p53730' => 'bna', 'A04p01410' => 'bna', 'A05p05420' => 'bna', 'A05p39630' => 'bna', 'A05p39640' => 'bna', 'A09p00970' => 'bna', 'A09p53060' => 'bna', 'A10p31890' => 'bna', 'Aa31LG10G15040' => 'aar', 'Aa31LG1G21090' => 'aar', 'Aa31LG1G26900' => 'aar', 'Aa31LG3G1820' => 'aar', 'Aa31LG5G1100' => 'aar', 'Aa31LG6G4740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2265' => 'aag', 'Actinidia07998' => 'ach', 'Actinidia11266' => 'ach', 'Actinidia12682' => 'ach', 'Actinidia26479' => 'ach', 'Actinidia31406' => 'ach', 'Actinidia32437' => 'ach', 'Actinidia38862' => 'ach', 'Ah.05g174230' => 'amhyb', 'Ah.05g179070' => 'amhyb', 'Ah.05g179090' => 'amhyb', 'Ah.12g059950' => 'amhyb', 'AL3G20480' => 'aly', 'AL4G44520' => 'aly', 'AL5G43110' => 'aly', 'AL6G13890' => 'aly', 'AL6G52620' => 'aly', 'AL7G30830' => 'aly', 'Aqoxy1G00899' => 'aox', 'Aqoxy5G04333' => 'aox', 'Aqoxy7G00641' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3IZ0NN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4EF6AW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W9P8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79GA3M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C43NQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFCU6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G95YVJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCHK29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LU1UG8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX91RN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGB4B1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8DA0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9H7JI' => 'arhy', 'AT3G09320' => 'ath', 'AT3G60800' => 'ath', 'AT4G00840' => 'ath', 'AT4G22750' => 'ath', 'AT5G04270' => 'ath', 'ATR0090G003' => 'atr', 'ATR0559G349' => 'atr', 'ATR0680G261' => 'atr', 'ATR0810G048' => 'atr', 'Atru.chr12.831' => 'acertr', 'Atru.chr5.303' => 'acertr', 'Atru.chr5.748' => 'acertr', 'Atru.chr8.1999' => 'acertr', 'Atru.chr9.1436' => 'acertr', 'AUR62004211' => 'cqu', 'AUR62004548' => 'cqu', 'AUR62013637' => 'cqu', 'AUR62022662' => 'cqu', 'AUR62025777' => 'cqu', 'AUR62042386' => 'cqu', 'BcaB01g02310' => 'bca', 'BcaB01g06062' => 'bca', 'BcaB02g08975' => 'bca', 'BcaB02g08980' => 'bca', 'BcaC01g04228' => 'bca', 'BcaC01g06830' => 'bca', 'BcaC02g10186' => 'bca', 'BcaC02g12214' => 'bca', 'BcaC04g24101' => 'bca', 'BcaC05g29520' => 'bca', 'BcaC05g29661' => 'bca', 'BcaC06g32130' => 'bca', 'BcaC06g32131' => 'bca', 'BcaC07g40601' => 'bca', 'BcaC07g42641' => 'bca', 'BcaNung01038' => 'bca', 'BcaNung01676' => 'bca', 'BcaNung02480' => 'bca', 'BcaNung07376' => 'bca', 'BolC3t16146H' => 'bol', 'BolC3t16637H' => 'bol', 'BolC4t22257H' => 'bol', 'BolC4t24728H' => 'bol', 'BolC5t34517H' => 'bol', 'BolC7t45703H' => 'bol', 'BolC8t51166H' => 'bol', 'BolC9t53038H' => 'bol', 'BolC9t60000H' => 'bol', 'BraA01t01345Z' => 'bra', 'BraA01t01346Z' => 'bra', 'BraA01t01348Z' => 'bra', 'BraA03t12347Z' => 'bra', 'BraA03t12775Z' => 'bra', 'BraA03t14439Z' => 'bra', 'BraA04t15860Z' => 'bra', 'BraA05t19511Z' => 'bra', 'BraA05t22746Z' => 'bra', 'BraA09t35767Z' => 'bra', 'BraA09t40732Z' => 'bra', 'BraA10t45233Z' => 'bra', 'C03p38720' => 'bna', 'C03p43680' => 'bna', 'C04p06350' => 'bna', 'C04p31800' => 'bna', 'C05p58680' => 'bna', 'C07p52110' => 'bna', 'C08p35760' => 'bna', 'C09p01050' => 'bna', 'C09p72600' => 'bna', 'CAN.G106.2' => 'can', 'CAN.G1482.1' => 'can', 'CAN.G324.12' => 'can', 'CAN.G388.20' => 'can', 'CAN.G412.7' => 'can', 'CAN.G694.32' => 'can', 'CAN.G92.12' => 'can', 'CANSAT11G2353' => 'cansat', 'CANSAT21G1398' => 'cansat', 'CANSAT56G2456' => 'cansat', 'CANSAT56G3031' => 'cansat', 'CANSAT56G4539' => 'cansat', 'CARHR083680' => 'chi', 'CARHR171190' => 'chi', 'CARHR209010' => 'chi', 'CARHR229680' => 'chi', 'CARHR249490' => 'chi', 'Carub.0003s0844' => 'cru', 'Carub.0005s2755' => 'cru', 'Carub.0006s0322' => 'cru', 'Carub.0006s3586' => 'cru', 'Carub.0007s1855' => 'cru', 'Ca_07808_v3' => 'car', 'Ca_09535_v3' => 'car', 'Ca_10548_v3' => 'car', 'Ca_19913_v3' => 'car', 'Ca_19916_v3' => 'car', 'Ca_19975_v3' => 'car', 'CBR_g22876' => 'cbr', 'CBR_g22879' => 'cbr', 'CBR_g38491' => 'cbr', 'CBR_g54185' => 'cbr', 'CBR_g54190' => 'cbr', 'Cc02_g11020' => 'ccan', 'Cc02_g23920' => 'ccan', 'Cc02_g39860' => 'ccan', 'Cc02_g39870' => 'ccan', 'Cc03_g06760' => 'ccan', 'Cc06_g02450' => 'ccan', 'Cc09_g09450' => 'ccan', 'CDE02G1959' => 'cde', 'CDE04G0600' => 'cde', 'CDE07G1996' => 'cde', 'CDE07G2078' => 'cde', 'CDE11G0611' => 'cde', 'Cfa001683' => 'cfa', 'Cfa001734' => 'cfa', 'Cfa001737' => 'cfa', 'Cfa003751' => 'cfa', 'Cfa012019' => 'cfa', 'Cfa017353' => 'cfa', 'Cfa017732' => 'cfa', 'Cfa022464' => 'cfa', 'Ciclev10012400m.g' => 'ccl', 'Ciclev10021242m.g' => 'ccl', 'Ciclev10021302m.g' => 'ccl', 'Ciclev10021463m.g' => 'ccl', 'Ciclev10032359m.g' => 'ccl', 'CiPaw.01G081000' => 'cil', 'CiPaw.01G262500' => 'cil', 'CiPaw.01G269800' => 'cil', 'CiPaw.02G168400' => 'cil', 'CiPaw.05G119500' => 'cil', 'CiPaw.11G147300' => 'cil', 'ClCG01G003630' => 'cla', 'ClCG05G000510' => 'cla', 'ClCG05G002300' => 'cla', 'ClCG08G007650' => 'cla', 'ClCG10G021250' => 'cla', 'COL.COLO4_06218' => 'col', 'COL.COLO4_12538' => 'col', 'COL.COLO4_14775' => 'col', 'COL.COLO4_23875' => 'col', 'Cpa.g.sc141.16' => 'cpa', 'Cpa.g.sc169.16' => 'cpa', 'Cpa.g.sc244.4' => 'cpa', 'Cpa.g.sc244.5' => 'cpa', 'Cpa.g.sc29.87' => 'cpa', 'Cpa.g.sc53.115' => 'cpa', 'Cre03.g207502' => 'cre', 'Cre06.g277000' => 'cre', 'Cre09.g394050' => 'cre', 'CsaV3_3G007680' => 'csa', 'CsaV3_3G009710' => 'csa', 'CsaV3_3G034790' => 'csa', 'CsaV3_5G003750' => 'csa', 'CsaV3_6G036620' => 'csa', 'CSS0002288' => 'camsi', 'CSS0011250' => 'camsi', 'CSS0021619' => 'camsi', 'CSS0046701' => 'camsi', 'DCAR_006420' => 'dca', 'DCAR_006865' => 'dca', 'DCAR_008558' => 'dca', 'DCAR_028754' => 'dca', 'DCAR_028755' => 'dca', 'Dinv31218' => 'din', 'Dinv32371' => 'din', 'Dinv34250' => 'din', 'Dinv37156' => 'din', 'Dinv43704' => 'din', 'Duzib093G1811' => 'dzi', 'Duzib106G1622' => 'dzi', 'Duzib114G0504' => 'dzi', 'Duzib128G0338' => 'dzi', 'Duzib128G1577' => 'dzi', 'Duzib133G0104' => 'dzi', 'Duzib133G1080' => 'dzi', 'Duzib138G0324' => 'dzi', 'Duzib138G0394' => 'dzi', 'Duzib205G0122' => 'dzi', 'Duzib268G1020' => 'dzi', 'Duzib268G1359' => 'dzi', 'ECA232G3929' => 'eca', 'ECA236G2210' => 'eca', 'ECA236G2287' => 'eca', 'ECA240G4568' => 'eca', 'ECA247G0894' => 'eca', 'EL10Ac1g00200' => 'bvu', 'EL10Ac1g00886' => 'bvu', 'EL10As1g23091' => 'bvu', 'EL10As1g23092' => 'bvu', 'Eucgr.A01284' => 'egr', 'Eucgr.A01285' => 'egr', 'Eucgr.D02456' => 'egr', 'Eucgr.E00018' => 'egr', 'Eucgr.E01439' => 'egr', 'Eucgr.G02859' => 'egr', 'FAN01G0168' => 'fan', 'FAN01G0453' => 'fan', 'FAN01G2761' => 'fan', 'FAN02G1239' => 'fan', 'FAN03G0645' => 'fan', 'FAN03G2707' => 'fan', 'FAN03G2978' => 'fan', 'FAN04G0227' => 'fan', 'FAN06G0091' => 'fan', 'FAN06G1418' => 'fan', 'FAN06G1512' => 'fan', 'FAN06G1986' => 'fan', 'FAN06G2905' => 'fan', 'FAN06G4325' => 'fan', 'FAN08G0033' => 'fan', 'FAN09G0642' => 'fan', 'FAN10G1763' => 'fan', 'FAN10G2026' => 'fan', 'FAN10G2513' => 'fan', 'FAN10G3402' => 'fan', 'FAN10G3564' => 'fan', 'FAN10G3987' => 'fan', 'FAN13G1490' => 'fan', 'FAN14G5857' => 'fan', 'FAN18G1188' => 'fan', 'FvH4_5g00750' => 'fve', 'FvH4_6g13410' => 'fve', 'FvH4_7g11740' => 'fve', 'FvH4_7g17410' => 'fve', 'FvH4_7g18860' => 'fve', 'Glyma.01G099100' => 'gma', 'Glyma.01G142300' => 'gma', 'Glyma.03G025500' => 'gma', 'Glyma.03G069700' => 'gma', 'Glyma.03G260000' => 'gma', 'Glyma.09G269800' => 'gma', 'Glyma.10G208700' => 'gma', 'Glyma.18G220400' => 'gma', 'Glyma.20G182000' => 'gma', 'Gohir.A01G221726' => 'ghi', 'Gohir.A07G134600' => 'ghi', 'Gohir.A07G146000' => 'ghi', 'Gohir.A08G173900' => 'ghi', 'Gohir.A09G194900' => 'ghi', 'Gohir.A10G204100' => 'ghi', 'Gohir.A11G080600' => 'ghi', 'Gohir.A11G327500' => 'ghi', 'Gohir.A12G101800' => 'ghi', 'Gohir.D01G211200' => 'ghi', 'Gohir.D07G139200' => 'ghi', 'Gohir.D07G152100' => 'ghi', 'Gohir.D08G192600' => 'ghi', 'Gohir.D09G189200' => 'ghi', 'Gohir.D10G212000' => 'ghi', 'Gohir.D11G085200' => 'ghi', 'Gohir.D11G346400' => 'ghi', 'Gohir.D12G104800' => 'ghi', 'Gorai.001G151300' => 'gra', 'Gorai.001G174100' => 'gra', 'Gorai.002G257000' => 'gra', 'Gorai.004G202600' => 'gra', 'Gorai.007G090900' => 'gra', 'Gorai.007G376700' => 'gra', 'Gorai.008G114100' => 'gra', 'Gorai.011G237900' => 'gra', 'GSVIVG01005450001' => 'vvi', 'GSVIVG01016232001' => 'vvi', 'GSVIVG01026157001' => 'vvi', 'GSVIVG01027419001' => 'vvi', 'GSVIVG01027631001' => 'vvi', 'GSVIVG01034143001' => 'vvi', 'HanXRQChr03g0093921' => 'han', 'HanXRQChr04g0120001' => 'han', 'HanXRQChr04g0122561' => 'han', 'HanXRQChr09g0246851' => 'han', 'HanXRQChr10g0293311' => 'han', 'HanXRQChr13g0425231' => 'han', 'HanXRQChr16g0532571' => 'han', 'Haze_09050' => 'cav', 'Haze_15715' => 'cav', 'Haze_15716' => 'cav', 'Haze_16803' => 'cav', 'Haze_16850' => 'cav', 'Hma1.2p1_0301F.1_g118655' => 'hma', 'Hma1.2p1_0309F.1_g120590' => 'hma', 'Hma1.2p1_0936F.1_g238900' => 'hma', 'Hma1.2p1_3552F.1_g336740' => 'hma', 'HPP92_003520' => 'vpl', 'HPP92_006628' => 'vpl', 'HPP92_006645' => 'vpl', 'HPP92_014669' => 'vpl', 'HPP92_015077' => 'vpl', 'Hund16742' => 'sun', 'Hund17022' => 'sun', 'Lalb_Chr02g0152131' => 'lal', 'Lalb_Chr05g0225371' => 'lal', 'Lalb_Chr07g0189841' => 'lal', 'Lalb_Chr07g0192961' => 'lal', 'Lalb_Chr12g0208221' => 'lal', 'Lalb_Chr13g0291211' => 'lal', 'Lalb_Chr13g0291781' => 'lal', 'Lalb_Chr18g0044651' => 'lal', 'Lalb_Chr21g0313731' => 'lal', 'Lj1g0022533' => 'lja', 'Lj2A18T50' => 'lonja', 'Lj2A92G93' => 'lonja', 'Lj3A965T73' => 'lonja', 'Lj3g0000673' => 'lja', 'Lj3g0002666' => 'lja', 'Lj4g0016985' => 'lja', 'Lj5g0003625' => 'lja', 'Lj7A529G36' => 'lonja', 'Lj9A569T49' => 'lonja', 'Lj9A604T63' => 'lonja', 'Lsat_1_v5_gn_3_132060' => 'lsa', 'Lsat_1_v5_gn_4_68941' => 'lsa', 'Lsat_1_v5_gn_5_95580' => 'lsa', 'Lsat_1_v5_gn_7_161' => 'lsa', 'Lsat_1_v5_gn_7_7041' => 'lsa', 'Lsat_1_v5_gn_9_33481' => 'lsa', 'Lsat_1_v5_gn_9_68260' => 'lsa', 'Manes.01G073100' => 'mes', 'Manes.01G266300' => 'mes', 'Manes.02G033300' => 'mes', 'Manes.05G017900' => 'mes', 'Manes.05G046100' => 'mes', 'Manes.08G080900' => 'mes', 'Manes.10G049400' => 'mes', 'Mapoly0009s0186' => 'mpo', 'Mapoly0036s0118' => 'mpo', 'Mapoly0101s0046' => 'mpo', 'MBI04_g30218_MAGBIO' => 'mbi', 'MBI04_g35564_MAGBIO' => 'mbi', 'MBI12_g34011_MAGBIO' => 'mbi', 'MBI14_g04655_MAGBIO' => 'mbi', 'MCO07G653' => 'mco', 'MCO10G173' => 'mco', 'MD01G1087100' => 'mdo', 'MD01G1104200' => 'mdo', 'MD02G1205100' => 'mdo', 'MD04G1079200' => 'mdo', 'MD04G1131400' => 'mdo', 'MD07G1121600' => 'mdo', 'MD07G1157300' => 'mdo', 'MD07G1171000' => 'mdo', 'MD12G1144500' => 'mdo', 'Medtr1g094610' => 'mtr', 'Medtr4g021795' => 'mtr', 'Medtr4g023760' => 'mtr', 'Medtr7g118050' => 'mtr', 'MELO3C005582.2' => 'cme', 'MELO3C005989.2' => 'cme', 'MELO3C006192.2' => 'cme', 'MELO3C009248.2' => 'cme', 'MELO3C019817.2' => 'cme', 'Migut.B01625' => 'egut', 'Migut.B01915' => 'egut', 'Migut.F01721' => 'egut', 'Migut.J00314' => 'egut', 'MSTRG.20742' => 'ama', 'MSTRG.8134' => 'ama', 'Nitab4.5_0000096g0010' => 'nta', 'Nitab4.5_0000202g0030' => 'nta', 'Nitab4.5_0000216g0370' => 'nta', 'Nitab4.5_0000457g0230' => 'nta', 'Nitab4.5_0001702g0170' => 'nta', 'Nitab4.5_0003607g0010' => 'nta', 'Nitab4.5_0004917g0020' => 'nta', 'Nitab4.5_0007059g0010' => 'nta', 'Nitab4.5_0007184g0010' => 'nta', 'Nitab4.5_0007346g0020' => 'nta', 'Nn1g00410' => 'nnu', 'Nn1g01252' => 'nnu', 'Nn2g11168' => 'nnu', 'Nn2g13403' => 'nnu', 'Nn2g13760' => 'nnu', 'Nn4g26380' => 'nnu', 'Oeu000806.2' => 'oeu', 'Oeu005788.1' => 'oeu', 'Oeu006900.3' => 'oeu', 'Oeu007797.1' => 'oeu', 'Oeu011932.1' => 'oeu', 'Oeu022739.1' => 'oeu', 'Oeu037918.1' => 'oeu', 'Oeu055490.2' => 'oeu', 'Os01g0844400' => 'osa', 'Os02g0819100' => 'osa', 'Os03g0804300' => 'osa', 'Os05g0458000' => 'osa', 'Os07g0467800' => 'osa', 'Os12g0602200' => 'osa', 'Peaxi162Scf00013g03444' => 'pax', 'Peaxi162Scf00094g01120' => 'pax', 'Peaxi162Scf00191g01211' => 'pax', 'Peaxi162Scf00238g01110' => 'pax', 'Peaxi162Scf00330g00719' => 'pax', 'Peaxi162Scf00627g00018' => 'pax', 'PGR031G2686' => 'pgr', 'PGR042G0809' => 'pgr', 'PGR142G0193' => 'pgr', 'PGSC0003DMG400011066' => 'stu', 'PGSC0003DMG400012041' => 'stu', 'PGSC0003DMG400013678' => 'stu', 'PGSC0003DMG400023477' => 'stu', 'PGSC0003DMG400025956' => 'stu', 'PGSC0003DMG401019151' => 'stu', 'Phvul.006G116400' => 'pvu', 'Phvul.007G097300' => 'pvu', 'Phvul.010G015000' => 'pvu', 'Phvul.010G083900' => 'pvu', 'Potri.001G117100' => 'ptr', 'Potri.002G147300' => 'ptr', 'Potri.003G115600' => 'ptr', 'Potri.006G087400' => 'ptr', 'Potri.010G226100' => 'ptr', 'Potri.014G069200' => 'ptr', 'Potri.014G104000' => 'ptr', 'Potri.016G100200' => 'ptr', 'Pp3c10_20450' => 'ppa', 'Pp3c1_42400' => 'ppa', 'Pp3c3_24390' => 'ppa', 'Pp3c3_2860' => 'ppa', 'PRCOL_00003193' => 'pco', 'Prupe.2G144500' => 'ppe', 'Prupe.2G195700' => 'ppe', 'Prupe.2G209800' => 'ppe', 'Prupe.5G080000' => 'ppe', 'Prupe.6G257900' => 'ppe', 'Psat3g001160' => 'psa', 'Psat6g181880' => 'psa', 'Psat7g233720' => 'psa', 'PSO063G7587' => 'pso', 'PSO339G2145' => 'pso', 'PSO339G3369' => 'pso', 'PSO478G2747' => 'pso', 'PSO513G0140' => 'pso', 'PSO782G1614' => 'pso', 'PSO782G4889' => 'pso', 'PSO782G5485' => 'pso', 'PSO801G0241' => 'pso', 'QL07p048854' => 'qlo', 'QL08p046745' => 'qlo', 'QL08p052606' => 'qlo', 'QL08p053414' => 'qlo', 'QL08p054868' => 'qlo', 'RcHm_v2.0_Chr1g0350251' => 'rch', 'RcHm_v2.0_Chr1g0360851' => 'rch', 'RcHm_v2.0_Chr1g0362791' => 'rch', 'RcHm_v2.0_Chr3g0466281' => 'rch', 'RcHm_v2.0_Chr7g0201481' => 'rch', 'Rhsim01G0148600' => 'rsi', 'Rhsim05G0194400' => 'rsi', 'Rhsim07G0000700' => 'rsi', 'Rhsim07G0000800' => 'rsi', 'Rhsim07G0027900' => 'rsi', 'Rhsim09G0149500' => 'rsi', 'RhsimUnG0186900' => 'rsi', 'Sabra01G0089900' => 'sbr', 'Sabra02G0114700' => 'sbr', 'Sabra02G0116300' => 'sbr', 'Sabra03G0080100' => 'sbr', 'Sabra08G0024300' => 'sbr', 'Sabra10G0174300' => 'sbr', 'Sabra14G0048900' => 'sbr', 'Sabra14G0076500' => 'sbr', 'SalBow5G2513' => 'sbo', 'Sc01g0002300' => 'sci', 'Sc01g0004450' => 'sci', 'Sc06g0001680' => 'sci', 'Sc23g0003580' => 'sci', 'Sed0000913' => 'sed', 'Sed0001655' => 'sed', 'Sed0007745' => 'sed', 'Sed0010951' => 'sed', 'Sed0017599' => 'sed', 'Sed0021405' => 'sed', 'Sed0022810' => 'sed', 'SEGI_07099' => 'sgi', 'SEGI_11931' => 'sgi', 'SEGI_13187' => 'sgi', 'SEGI_29958' => 'sgi', 'SEGI_36351' => 'sgi', 'SGA_v2.0_scaffold126G33770' => 'sas', 'SGA_v2.0_scaffold153G37003' => 'sas', 'SGA_v2.0_scaffold2G01359' => 'sas', 'SGA_v2.0_scaffold5G03064' => 'sas', 'SGA_v2.0_scaffold95G28903' => 'sas', 'SHI12701' => 'shi', 'SHI26410' => 'shi', 'SHI38997' => 'shi', 'SHI53759' => 'shi', 'SHI53886' => 'shi', 'SHI54714' => 'shi', 'SMO011G0041' => 'smo', 'SMO146G0251' => 'smo', 'SMO160G0004' => 'smo', 'SMO174G0057' => 'smo', 'SMO244G0089' => 'smo', 'SMO296G0011' => 'smo', 'Solyc01g091280.3' => 'sly', 'Solyc05g047610.3' => 'sly', 'Solyc05g047640.3' => 'sly', 'Solyc05g055630.3' => 'sly', 'Solyc10g018160.2' => 'sly', 'Solyc10g084820.2' => 'sly', 'Solyc10g086565.2' => 'sly', 'Sopen01g037030' => 'spe', 'Sopen05g027920' => 'spe', 'Sopen05g034070' => 'spe', 'Sopen10g007260' => 'spe', 'Sopen10g034260' => 'spe', 'Sopen10g035950' => 'spe', 'Sp3g07710' => 'spa', 'Sp4g27420' => 'spa', 'Sp5g02450' => 'spa', 'Sp6g01280' => 'spa', 'Sp6g38480' => 'spa', 'Sp7g20780' => 'spa', 'TAR374G1413' => 'tar', 'TAR623G1777' => 'tar', 'TAR629G2370' => 'tar', 'TAR633G1759' => 'tar', 'TAR636G3387' => 'tar', 'THA.LOC104802447' => 'tha', 'THA.LOC104813916' => 'tha', 'THA.LOC104816423' => 'tha', 'THA.LOC104817246' => 'tha', 'THA.LOC104825895' => 'tha', 'Thecc.01G335200' => 'tca', 'Thecc.01G377400' => 'tca', 'Thecc.03G262200' => 'tca', 'Thecc.05G036800' => 'tca', 'Thecc.10G080500' => 'tca', 'Thecc.10G080800' => 'tca', 'Thhalv10001560m.g' => 'esa', 'Thhalv10006120m.g' => 'esa', 'Thhalv10014375m.g' => 'esa', 'Thhalv10021264m.g' => 'esa', 'Thhalv10028856m.g' => 'esa', 'TPR.G1914' => 'tpr', 'TPR.G4757' => 'tpr', 'TPR.G5595' => 'tpr', 'TWI14G0952' => 'twi', 'TWI14G1307' => 'twi', 'TWI38G2143' => 'twi', 'TWI59G0826' => 'twi', 'TWI77G0527' => 'twi', 'TWI81G0150' => 'twi', 'unitig_21.g21018' => 'ugi', 'unitig_26.g9725' => 'ugi', 'unitig_744.g24653' => 'ugi', 'unitig_749.g13778' => 'ugi', 'unitig_899.g15035' => 'ugi', 'vmacro04296' => 'vma', 'vmacro04852' => 'vma', 'vmacro13404' => 'vma', 'vmacro20169' => 'vma', 'vmacro21014' => 'vma', 'VMungo0331G0237' => 'vmu', 'VMungo0331G0706' => 'vmu', 'VMungo0331G1361' => 'vmu', 'VMungo0331G1489' => 'vmu', 'VMungo0540G1037' => 'vmu', 'VMungo0720G2487' => 'vmu', 'VMungo0720G2721' => 'vmu', 'Zm00001eb086860' => 'zma', 'Zm00001eb104760' => 'zma', 'Zm00001eb148220' => 'zma', 'Zm00001eb259030' => 'zma', 'Zm00001eb289590' => 'zma', 'Zm00001eb420150' => 'zma' ), 'gf_id' => 'HOM05D000968', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000968' ), 'data_identifier' => 'HOM05D000968', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000968', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p31690' => 'bna', 'A03p36040' => 'bna', 'A03p53730' => 'bna', 'A04p01410' => 'bna', 'A05p05420' => 'bna', 'A05p39630' => 'bna', 'A05p39640' => 'bna', 'A09p00970' => 'bna', 'A09p53060' => 'bna', 'A10p31890' => 'bna', 'Aa31LG10G15040' => 'aar', 'Aa31LG1G21090' => 'aar', 'Aa31LG1G26900' => 'aar', 'Aa31LG3G1820' => 'aar', 'Aa31LG5G1100' => 'aar', 'Aa31LG6G4740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2265' => 'aag', 'Actinidia07998' => 'ach', 'Actinidia11266' => 'ach', 'Actinidia12682' => 'ach', 'Actinidia26479' => 'ach', 'Actinidia31406' => 'ach', 'Actinidia32437' => 'ach', 'Actinidia38862' => 'ach', 'Ah.05g174230' => 'amhyb', 'Ah.05g179070' => 'amhyb', 'Ah.05g179090' => 'amhyb', 'Ah.12g059950' => 'amhyb', 'AL3G20480' => 'aly', 'AL4G44520' => 'aly', 'AL5G43110' => 'aly', 'AL6G13890' => 'aly', 'AL6G52620' => 'aly', 'AL7G30830' => 'aly', 'Aqoxy1G00899' => 'aox', 'Aqoxy5G04333' => 'aox', 'Aqoxy7G00641' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3IZ0NN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4EF6AW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W9P8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79GA3M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C43NQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFCU6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G95YVJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCHK29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LU1UG8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX91RN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGB4B1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8DA0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9H7JI' => 'arhy', 'AT3G09320' => 'ath', 'AT3G60800' => 'ath', 'AT4G00840' => 'ath', 'AT4G22750' => 'ath', 'AT5G04270' => 'ath', 'ATR0090G003' => 'atr', 'ATR0559G349' => 'atr', 'ATR0680G261' => 'atr', 'ATR0810G048' => 'atr', 'Atru.chr12.831' => 'acertr', 'Atru.chr5.303' => 'acertr', 'Atru.chr5.748' => 'acertr', 'Atru.chr8.1999' => 'acertr', 'Atru.chr9.1436' => 'acertr', 'AUR62004211' => 'cqu', 'AUR62004548' => 'cqu', 'AUR62013637' => 'cqu', 'AUR62022662' => 'cqu', 'AUR62025777' => 'cqu', 'AUR62042386' => 'cqu', 'BcaB01g02310' => 'bca', 'BcaB01g06062' => 'bca', 'BcaB02g08975' => 'bca', 'BcaB02g08980' => 'bca', 'BcaC01g04228' => 'bca', 'BcaC01g06830' => 'bca', 'BcaC02g10186' => 'bca', 'BcaC02g12214' => 'bca', 'BcaC04g24101' => 'bca', 'BcaC05g29520' => 'bca', 'BcaC05g29661' => 'bca', 'BcaC06g32130' => 'bca', 'BcaC06g32131' => 'bca', 'BcaC07g40601' => 'bca', 'BcaC07g42641' => 'bca', 'BcaNung01038' => 'bca', 'BcaNung01676' => 'bca', 'BcaNung02480' => 'bca', 'BcaNung07376' => 'bca', 'BolC3t16146H' => 'bol', 'BolC3t16637H' => 'bol', 'BolC4t22257H' => 'bol', 'BolC4t24728H' => 'bol', 'BolC5t34517H' => 'bol', 'BolC7t45703H' => 'bol', 'BolC8t51166H' => 'bol', 'BolC9t53038H' => 'bol', 'BolC9t60000H' => 'bol', 'BraA01t01345Z' => 'bra', 'BraA01t01346Z' => 'bra', 'BraA01t01348Z' => 'bra', 'BraA03t12347Z' => 'bra', 'BraA03t12775Z' => 'bra', 'BraA03t14439Z' => 'bra', 'BraA04t15860Z' => 'bra', 'BraA05t19511Z' => 'bra', 'BraA05t22746Z' => 'bra', 'BraA09t35767Z' => 'bra', 'BraA09t40732Z' => 'bra', 'BraA10t45233Z' => 'bra', 'C03p38720' => 'bna', 'C03p43680' => 'bna', 'C04p06350' => 'bna', 'C04p31800' => 'bna', 'C05p58680' => 'bna', 'C07p52110' => 'bna', 'C08p35760' => 'bna', 'C09p01050' => 'bna', 'C09p72600' => 'bna', 'CAN.G106.2' => 'can', 'CAN.G1482.1' => 'can', 'CAN.G324.12' => 'can', 'CAN.G388.20' => 'can', 'CAN.G412.7' => 'can', 'CAN.G694.32' => 'can', 'CAN.G92.12' => 'can', 'CANSAT11G2353' => 'cansat', 'CANSAT21G1398' => 'cansat', 'CANSAT56G2456' => 'cansat', 'CANSAT56G3031' => 'cansat', 'CANSAT56G4539' => 'cansat', 'CARHR083680' => 'chi', 'CARHR171190' => 'chi', 'CARHR209010' => 'chi', 'CARHR229680' => 'chi', 'CARHR249490' => 'chi', 'Carub.0003s0844' => 'cru', 'Carub.0005s2755' => 'cru', 'Carub.0006s0322' => 'cru', 'Carub.0006s3586' => 'cru', 'Carub.0007s1855' => 'cru', 'Ca_07808_v3' => 'car', 'Ca_09535_v3' => 'car', 'Ca_10548_v3' => 'car', 'Ca_19913_v3' => 'car', 'Ca_19916_v3' => 'car', 'Ca_19975_v3' => 'car', 'CBR_g22876' => 'cbr', 'CBR_g22879' => 'cbr', 'CBR_g38491' => 'cbr', 'CBR_g54185' => 'cbr', 'CBR_g54190' => 'cbr', 'Cc02_g11020' => 'ccan', 'Cc02_g23920' => 'ccan', 'Cc02_g39860' => 'ccan', 'Cc02_g39870' => 'ccan', 'Cc03_g06760' => 'ccan', 'Cc06_g02450' => 'ccan', 'Cc09_g09450' => 'ccan', 'CDE02G1959' => 'cde', 'CDE04G0600' => 'cde', 'CDE07G1996' => 'cde', 'CDE07G2078' => 'cde', 'CDE11G0611' => 'cde', 'Cfa001683' => 'cfa', 'Cfa001734' => 'cfa', 'Cfa001737' => 'cfa', 'Cfa003751' => 'cfa', 'Cfa012019' => 'cfa', 'Cfa017353' => 'cfa', 'Cfa017732' => 'cfa', 'Cfa022464' => 'cfa', 'Ciclev10012400m.g' => 'ccl', 'Ciclev10021242m.g' => 'ccl', 'Ciclev10021302m.g' => 'ccl', 'Ciclev10021463m.g' => 'ccl', 'Ciclev10032359m.g' => 'ccl', 'CiPaw.01G081000' => 'cil', 'CiPaw.01G262500' => 'cil', 'CiPaw.01G269800' => 'cil', 'CiPaw.02G168400' => 'cil', 'CiPaw.05G119500' => 'cil', 'CiPaw.11G147300' => 'cil', 'ClCG01G003630' => 'cla', 'ClCG05G000510' => 'cla', 'ClCG05G002300' => 'cla', 'ClCG08G007650' => 'cla', 'ClCG10G021250' => 'cla', 'COL.COLO4_06218' => 'col', 'COL.COLO4_12538' => 'col', 'COL.COLO4_14775' => 'col', 'COL.COLO4_23875' => 'col', 'Cpa.g.sc141.16' => 'cpa', 'Cpa.g.sc169.16' => 'cpa', 'Cpa.g.sc244.4' => 'cpa', 'Cpa.g.sc244.5' => 'cpa', 'Cpa.g.sc29.87' => 'cpa', 'Cpa.g.sc53.115' => 'cpa', 'Cre03.g207502' => 'cre', 'Cre06.g277000' => 'cre', 'Cre09.g394050' => 'cre', 'CsaV3_3G007680' => 'csa', 'CsaV3_3G009710' => 'csa', 'CsaV3_3G034790' => 'csa', 'CsaV3_5G003750' => 'csa', 'CsaV3_6G036620' => 'csa', 'CSS0002288' => 'camsi', 'CSS0011250' => 'camsi', 'CSS0021619' => 'camsi', 'CSS0046701' => 'camsi', 'DCAR_006420' => 'dca', 'DCAR_006865' => 'dca', 'DCAR_008558' => 'dca', 'DCAR_028754' => 'dca', 'DCAR_028755' => 'dca', 'Dinv31218' => 'din', 'Dinv32371' => 'din', 'Dinv34250' => 'din', 'Dinv37156' => 'din', 'Dinv43704' => 'din', 'Duzib093G1811' => 'dzi', 'Duzib106G1622' => 'dzi', 'Duzib114G0504' => 'dzi', 'Duzib128G0338' => 'dzi', 'Duzib128G1577' => 'dzi', 'Duzib133G0104' => 'dzi', 'Duzib133G1080' => 'dzi', 'Duzib138G0324' => 'dzi', 'Duzib138G0394' => 'dzi', 'Duzib205G0122' => 'dzi', 'Duzib268G1020' => 'dzi', 'Duzib268G1359' => 'dzi', 'ECA232G3929' => 'eca', 'ECA236G2210' => 'eca', 'ECA236G2287' => 'eca', 'ECA240G4568' => 'eca', 'ECA247G0894' => 'eca', 'EL10Ac1g00200' => 'bvu', 'EL10Ac1g00886' => 'bvu', 'EL10As1g23091' => 'bvu', 'EL10As1g23092' => 'bvu', 'Eucgr.A01284' => 'egr', 'Eucgr.A01285' => 'egr', 'Eucgr.D02456' => 'egr', 'Eucgr.E00018' => 'egr', 'Eucgr.E01439' => 'egr', 'Eucgr.G02859' => 'egr', 'FAN01G0168' => 'fan', 'FAN01G0453' => 'fan', 'FAN01G2761' => 'fan', 'FAN02G1239' => 'fan', 'FAN03G0645' => 'fan', 'FAN03G2707' => 'fan', 'FAN03G2978' => 'fan', 'FAN04G0227' => 'fan', 'FAN06G0091' => 'fan', 'FAN06G1418' => 'fan', 'FAN06G1512' => 'fan', 'FAN06G1986' => 'fan', 'FAN06G2905' => 'fan', 'FAN06G4325' => 'fan', 'FAN08G0033' => 'fan', 'FAN09G0642' => 'fan', 'FAN10G1763' => 'fan', 'FAN10G2026' => 'fan', 'FAN10G2513' => 'fan', 'FAN10G3402' => 'fan', 'FAN10G3564' => 'fan', 'FAN10G3987' => 'fan', 'FAN13G1490' => 'fan', 'FAN14G5857' => 'fan', 'FAN18G1188' => 'fan', 'FvH4_5g00750' => 'fve', 'FvH4_6g13410' => 'fve', 'FvH4_7g11740' => 'fve', 'FvH4_7g17410' => 'fve', 'FvH4_7g18860' => 'fve', 'Glyma.01G099100' => 'gma', 'Glyma.01G142300' => 'gma', 'Glyma.03G025500' => 'gma', 'Glyma.03G069700' => 'gma', 'Glyma.03G260000' => 'gma', 'Glyma.09G269800' => 'gma', 'Glyma.10G208700' => 'gma', 'Glyma.18G220400' => 'gma', 'Glyma.20G182000' => 'gma', 'Gohir.A01G221726' => 'ghi', 'Gohir.A07G134600' => 'ghi', 'Gohir.A07G146000' => 'ghi', 'Gohir.A08G173900' => 'ghi', 'Gohir.A09G194900' => 'ghi', 'Gohir.A10G204100' => 'ghi', 'Gohir.A11G080600' => 'ghi', 'Gohir.A11G327500' => 'ghi', 'Gohir.A12G101800' => 'ghi', 'Gohir.D01G211200' => 'ghi', 'Gohir.D07G139200' => 'ghi', 'Gohir.D07G152100' => 'ghi', 'Gohir.D08G192600' => 'ghi', 'Gohir.D09G189200' => 'ghi', 'Gohir.D10G212000' => 'ghi', 'Gohir.D11G085200' => 'ghi', 'Gohir.D11G346400' => 'ghi', 'Gohir.D12G104800' => 'ghi', 'Gorai.001G151300' => 'gra', 'Gorai.001G174100' => 'gra', 'Gorai.002G257000' => 'gra', 'Gorai.004G202600' => 'gra', 'Gorai.007G090900' => 'gra', 'Gorai.007G376700' => 'gra', 'Gorai.008G114100' => 'gra', 'Gorai.011G237900' => 'gra', 'GSVIVG01005450001' => 'vvi', 'GSVIVG01016232001' => 'vvi', 'GSVIVG01026157001' => 'vvi', 'GSVIVG01027419001' => 'vvi', 'GSVIVG01027631001' => 'vvi', 'GSVIVG01034143001' => 'vvi', 'HanXRQChr03g0093921' => 'han', 'HanXRQChr04g0120001' => 'han', 'HanXRQChr04g0122561' => 'han', 'HanXRQChr09g0246851' => 'han', 'HanXRQChr10g0293311' => 'han', 'HanXRQChr13g0425231' => 'han', 'HanXRQChr16g0532571' => 'han', 'Haze_09050' => 'cav', 'Haze_15715' => 'cav', 'Haze_15716' => 'cav', 'Haze_16803' => 'cav', 'Haze_16850' => 'cav', 'Hma1.2p1_0301F.1_g118655' => 'hma', 'Hma1.2p1_0309F.1_g120590' => 'hma', 'Hma1.2p1_0936F.1_g238900' => 'hma', 'Hma1.2p1_3552F.1_g336740' => 'hma', 'HPP92_003520' => 'vpl', 'HPP92_006628' => 'vpl', 'HPP92_006645' => 'vpl', 'HPP92_014669' => 'vpl', 'HPP92_015077' => 'vpl', 'Hund16742' => 'sun', 'Hund17022' => 'sun', 'Lalb_Chr02g0152131' => 'lal', 'Lalb_Chr05g0225371' => 'lal', 'Lalb_Chr07g0189841' => 'lal', 'Lalb_Chr07g0192961' => 'lal', 'Lalb_Chr12g0208221' => 'lal', 'Lalb_Chr13g0291211' => 'lal', 'Lalb_Chr13g0291781' => 'lal', 'Lalb_Chr18g0044651' => 'lal', 'Lalb_Chr21g0313731' => 'lal', 'Lj1g0022533' => 'lja', 'Lj2A18T50' => 'lonja', 'Lj2A92G93' => 'lonja', 'Lj3A965T73' => 'lonja', 'Lj3g0000673' => 'lja', 'Lj3g0002666' => 'lja', 'Lj4g0016985' => 'lja', 'Lj5g0003625' => 'lja', 'Lj7A529G36' => 'lonja', 'Lj9A569T49' => 'lonja', 'Lj9A604T63' => 'lonja', 'Lsat_1_v5_gn_3_132060' => 'lsa', 'Lsat_1_v5_gn_4_68941' => 'lsa', 'Lsat_1_v5_gn_5_95580' => 'lsa', 'Lsat_1_v5_gn_7_161' => 'lsa', 'Lsat_1_v5_gn_7_7041' => 'lsa', 'Lsat_1_v5_gn_9_33481' => 'lsa', 'Lsat_1_v5_gn_9_68260' => 'lsa', 'Manes.01G073100' => 'mes', 'Manes.01G266300' => 'mes', 'Manes.02G033300' => 'mes', 'Manes.05G017900' => 'mes', 'Manes.05G046100' => 'mes', 'Manes.08G080900' => 'mes', 'Manes.10G049400' => 'mes', 'Mapoly0009s0186' => 'mpo', 'Mapoly0036s0118' => 'mpo', 'Mapoly0101s0046' => 'mpo', 'MBI04_g30218_MAGBIO' => 'mbi', 'MBI04_g35564_MAGBIO' => 'mbi', 'MBI12_g34011_MAGBIO' => 'mbi', 'MBI14_g04655_MAGBIO' => 'mbi', 'MCO07G653' => 'mco', 'MCO10G173' => 'mco', 'MD01G1087100' => 'mdo', 'MD01G1104200' => 'mdo', 'MD02G1205100' => 'mdo', 'MD04G1079200' => 'mdo', 'MD04G1131400' => 'mdo', 'MD07G1121600' => 'mdo', 'MD07G1157300' => 'mdo', 'MD07G1171000' => 'mdo', 'MD12G1144500' => 'mdo', 'Medtr1g094610' => 'mtr', 'Medtr4g021795' => 'mtr', 'Medtr4g023760' => 'mtr', 'Medtr7g118050' => 'mtr', 'MELO3C005582.2' => 'cme', 'MELO3C005989.2' => 'cme', 'MELO3C006192.2' => 'cme', 'MELO3C009248.2' => 'cme', 'MELO3C019817.2' => 'cme', 'Migut.B01625' => 'egut', 'Migut.B01915' => 'egut', 'Migut.F01721' => 'egut', 'Migut.J00314' => 'egut', 'MSTRG.20742' => 'ama', 'MSTRG.8134' => 'ama', 'Nitab4.5_0000096g0010' => 'nta', 'Nitab4.5_0000202g0030' => 'nta', 'Nitab4.5_0000216g0370' => 'nta', 'Nitab4.5_0000457g0230' => 'nta', 'Nitab4.5_0001702g0170' => 'nta', 'Nitab4.5_0003607g0010' => 'nta', 'Nitab4.5_0004917g0020' => 'nta', 'Nitab4.5_0007059g0010' => 'nta', 'Nitab4.5_0007184g0010' => 'nta', 'Nitab4.5_0007346g0020' => 'nta', 'Nn1g00410' => 'nnu', 'Nn1g01252' => 'nnu', 'Nn2g11168' => 'nnu', 'Nn2g13403' => 'nnu', 'Nn2g13760' => 'nnu', 'Nn4g26380' => 'nnu', 'Oeu000806.2' => 'oeu', 'Oeu005788.1' => 'oeu', 'Oeu006900.3' => 'oeu', 'Oeu007797.1' => 'oeu', 'Oeu011932.1' => 'oeu', 'Oeu022739.1' => 'oeu', 'Oeu037918.1' => 'oeu', 'Oeu055490.2' => 'oeu', 'Os01g0844400' => 'osa', 'Os02g0819100' => 'osa', 'Os03g0804300' => 'osa', 'Os05g0458000' => 'osa', 'Os07g0467800' => 'osa', 'Os12g0602200' => 'osa', 'Peaxi162Scf00013g03444' => 'pax', 'Peaxi162Scf00094g01120' => 'pax', 'Peaxi162Scf00191g01211' => 'pax', 'Peaxi162Scf00238g01110' => 'pax', 'Peaxi162Scf00330g00719' => 'pax', 'Peaxi162Scf00627g00018' => 'pax', 'PGR031G2686' => 'pgr', 'PGR042G0809' => 'pgr', 'PGR142G0193' => 'pgr', 'PGSC0003DMG400011066' => 'stu', 'PGSC0003DMG400012041' => 'stu', 'PGSC0003DMG400013678' => 'stu', 'PGSC0003DMG400023477' => 'stu', 'PGSC0003DMG400025956' => 'stu', 'PGSC0003DMG401019151' => 'stu', 'Phvul.006G116400' => 'pvu', 'Phvul.007G097300' => 'pvu', 'Phvul.010G015000' => 'pvu', 'Phvul.010G083900' => 'pvu', 'Potri.001G117100' => 'ptr', 'Potri.002G147300' => 'ptr', 'Potri.003G115600' => 'ptr', 'Potri.006G087400' => 'ptr', 'Potri.010G226100' => 'ptr', 'Potri.014G069200' => 'ptr', 'Potri.014G104000' => 'ptr', 'Potri.016G100200' => 'ptr', 'Pp3c10_20450' => 'ppa', 'Pp3c1_42400' => 'ppa', 'Pp3c3_24390' => 'ppa', 'Pp3c3_2860' => 'ppa', 'PRCOL_00003193' => 'pco', 'Prupe.2G144500' => 'ppe', 'Prupe.2G195700' => 'ppe', 'Prupe.2G209800' => 'ppe', 'Prupe.5G080000' => 'ppe', 'Prupe.6G257900' => 'ppe', 'Psat3g001160' => 'psa', 'Psat6g181880' => 'psa', 'Psat7g233720' => 'psa', 'PSO063G7587' => 'pso', 'PSO339G2145' => 'pso', 'PSO339G3369' => 'pso', 'PSO478G2747' => 'pso', 'PSO513G0140' => 'pso', 'PSO782G1614' => 'pso', 'PSO782G4889' => 'pso', 'PSO782G5485' => 'pso', 'PSO801G0241' => 'pso', 'QL07p048854' => 'qlo', 'QL08p046745' => 'qlo', 'QL08p052606' => 'qlo', 'QL08p053414' => 'qlo', 'QL08p054868' => 'qlo', 'RcHm_v2.0_Chr1g0350251' => 'rch', 'RcHm_v2.0_Chr1g0360851' => 'rch', 'RcHm_v2.0_Chr1g0362791' => 'rch', 'RcHm_v2.0_Chr3g0466281' => 'rch', 'RcHm_v2.0_Chr7g0201481' => 'rch', 'Rhsim01G0148600' => 'rsi', 'Rhsim05G0194400' => 'rsi', 'Rhsim07G0000700' => 'rsi', 'Rhsim07G0000800' => 'rsi', 'Rhsim07G0027900' => 'rsi', 'Rhsim09G0149500' => 'rsi', 'RhsimUnG0186900' => 'rsi', 'Sabra01G0089900' => 'sbr', 'Sabra02G0114700' => 'sbr', 'Sabra02G0116300' => 'sbr', 'Sabra03G0080100' => 'sbr', 'Sabra08G0024300' => 'sbr', 'Sabra10G0174300' => 'sbr', 'Sabra14G0048900' => 'sbr', 'Sabra14G0076500' => 'sbr', 'SalBow5G2513' => 'sbo', 'Sc01g0002300' => 'sci', 'Sc01g0004450' => 'sci', 'Sc06g0001680' => 'sci', 'Sc23g0003580' => 'sci', 'Sed0000913' => 'sed', 'Sed0001655' => 'sed', 'Sed0007745' => 'sed', 'Sed0010951' => 'sed', 'Sed0017599' => 'sed', 'Sed0021405' => 'sed', 'Sed0022810' => 'sed', 'SEGI_07099' => 'sgi', 'SEGI_11931' => 'sgi', 'SEGI_13187' => 'sgi', 'SEGI_29958' => 'sgi', 'SEGI_36351' => 'sgi', 'SGA_v2.0_scaffold126G33770' => 'sas', 'SGA_v2.0_scaffold153G37003' => 'sas', 'SGA_v2.0_scaffold2G01359' => 'sas', 'SGA_v2.0_scaffold5G03064' => 'sas', 'SGA_v2.0_scaffold95G28903' => 'sas', 'SHI12701' => 'shi', 'SHI26410' => 'shi', 'SHI38997' => 'shi', 'SHI53759' => 'shi', 'SHI53886' => 'shi', 'SHI54714' => 'shi', 'SMO011G0041' => 'smo', 'SMO146G0251' => 'smo', 'SMO160G0004' => 'smo', 'SMO174G0057' => 'smo', 'SMO244G0089' => 'smo', 'SMO296G0011' => 'smo', 'Solyc01g091280.3' => 'sly', 'Solyc05g047610.3' => 'sly', 'Solyc05g047640.3' => 'sly', 'Solyc05g055630.3' => 'sly', 'Solyc10g018160.2' => 'sly', 'Solyc10g084820.2' => 'sly', 'Solyc10g086565.2' => 'sly', 'Sopen01g037030' => 'spe', 'Sopen05g027920' => 'spe', 'Sopen05g034070' => 'spe', 'Sopen10g007260' => 'spe', 'Sopen10g034260' => 'spe', 'Sopen10g035950' => 'spe', 'Sp3g07710' => 'spa', 'Sp4g27420' => 'spa', 'Sp5g02450' => 'spa', 'Sp6g01280' => 'spa', 'Sp6g38480' => 'spa', 'Sp7g20780' => 'spa', 'TAR374G1413' => 'tar', 'TAR623G1777' => 'tar', 'TAR629G2370' => 'tar', 'TAR633G1759' => 'tar', 'TAR636G3387' => 'tar', 'THA.LOC104802447' => 'tha', 'THA.LOC104813916' => 'tha', 'THA.LOC104816423' => 'tha', 'THA.LOC104817246' => 'tha', 'THA.LOC104825895' => 'tha', 'Thecc.01G335200' => 'tca', 'Thecc.01G377400' => 'tca', 'Thecc.03G262200' => 'tca', 'Thecc.05G036800' => 'tca', 'Thecc.10G080500' => 'tca', 'Thecc.10G080800' => 'tca', 'Thhalv10001560m.g' => 'esa', 'Thhalv10006120m.g' => 'esa', 'Thhalv10014375m.g' => 'esa', 'Thhalv10021264m.g' => 'esa', 'Thhalv10028856m.g' => 'esa', 'TPR.G1914' => 'tpr', 'TPR.G4757' => 'tpr', 'TPR.G5595' => 'tpr', 'TWI14G0952' => 'twi', 'TWI14G1307' => 'twi', 'TWI38G2143' => 'twi', 'TWI59G0826' => 'twi', 'TWI77G0527' => 'twi', 'TWI81G0150' => 'twi', 'unitig_21.g21018' => 'ugi', 'unitig_26.g9725' => 'ugi', 'unitig_744.g24653' => 'ugi', 'unitig_749.g13778' => 'ugi', 'unitig_899.g15035' => 'ugi', 'vmacro04296' => 'vma', 'vmacro04852' => 'vma', 'vmacro13404' => 'vma', 'vmacro20169' => 'vma', 'vmacro21014' => 'vma', 'VMungo0331G0237' => 'vmu', 'VMungo0331G0706' => 'vmu', 'VMungo0331G1361' => 'vmu', 'VMungo0331G1489' => 'vmu', 'VMungo0540G1037' => 'vmu', 'VMungo0720G2487' => 'vmu', 'VMungo0720G2721' => 'vmu', 'Zm00001eb086860' => 'zma', 'Zm00001eb104760' => 'zma', 'Zm00001eb148220' => 'zma', 'Zm00001eb259030' => 'zma', 'Zm00001eb289590' => 'zma', 'Zm00001eb420150' => 'zma' ) $gf_id = 'HOM05D000968' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000968' ) $data_identifier = 'HOM05D000968' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 19, 'bol' => (int) 9, 'bra' => (int) 12, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 5, 'ccan' => (int) 7, 'cde' => (int) 5, 'cfa' => (int) 8, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 4, 'dca' => (int) 5, 'din' => (int) 5, 'dzi' => (int) 12, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 25, 'fve' => (int) 5, 'gma' => (int) 9, 'ghi' => (int) 18, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 7, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 5, 'sun' => (int) 2, 'lal' => (int) 9, 'lja' => (int) 5, 'lonja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 9, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 2, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 3, 'stu' => (int) 6, 'pvu' => (int) 4, 'ptr' => (int) 8, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 3, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 1, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 5, 'sas' => (int) 5, 'shi' => (int) 6, 'smo' => (int) 6, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 3, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420150' $species_info = array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ) $local_species = 'cansat' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000968', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p31690' => 'bna', 'A03p36040' => 'bna', 'A03p53730' => 'bna', 'A04p01410' => 'bna', 'A05p05420' => 'bna', 'A05p39630' => 'bna', 'A05p39640' => 'bna', 'A09p00970' => 'bna', 'A09p53060' => 'bna', 'A10p31890' => 'bna', 'Aa31LG10G15040' => 'aar', 'Aa31LG1G21090' => 'aar', 'Aa31LG1G26900' => 'aar', 'Aa31LG3G1820' => 'aar', 'Aa31LG5G1100' => 'aar', 'Aa31LG6G4740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2265' => 'aag', 'Actinidia07998' => 'ach', 'Actinidia11266' => 'ach', 'Actinidia12682' => 'ach', 'Actinidia26479' => 'ach', 'Actinidia31406' => 'ach', 'Actinidia32437' => 'ach', 'Actinidia38862' => 'ach', 'Ah.05g174230' => 'amhyb', 'Ah.05g179070' => 'amhyb', 'Ah.05g179090' => 'amhyb', 'Ah.12g059950' => 'amhyb', 'AL3G20480' => 'aly', 'AL4G44520' => 'aly', 'AL5G43110' => 'aly', 'AL6G13890' => 'aly', 'AL6G52620' => 'aly', 'AL7G30830' => 'aly', 'Aqoxy1G00899' => 'aox', 'Aqoxy5G04333' => 'aox', 'Aqoxy7G00641' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3IZ0NN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4EF6AW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W9P8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79GA3M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C43NQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFCU6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G95YVJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCHK29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LU1UG8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX91RN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGB4B1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8DA0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9H7JI' => 'arhy', 'AT3G09320' => 'ath', 'AT3G60800' => 'ath', 'AT4G00840' => 'ath', 'AT4G22750' => 'ath', 'AT5G04270' => 'ath', 'ATR0090G003' => 'atr', 'ATR0559G349' => 'atr', 'ATR0680G261' => 'atr', 'ATR0810G048' => 'atr', 'Atru.chr12.831' => 'acertr', 'Atru.chr5.303' => 'acertr', 'Atru.chr5.748' => 'acertr', 'Atru.chr8.1999' => 'acertr', 'Atru.chr9.1436' => 'acertr', 'AUR62004211' => 'cqu', 'AUR62004548' => 'cqu', 'AUR62013637' => 'cqu', 'AUR62022662' => 'cqu', 'AUR62025777' => 'cqu', 'AUR62042386' => 'cqu', 'BcaB01g02310' => 'bca', 'BcaB01g06062' => 'bca', 'BcaB02g08975' => 'bca', 'BcaB02g08980' => 'bca', 'BcaC01g04228' => 'bca', 'BcaC01g06830' => 'bca', 'BcaC02g10186' => 'bca', 'BcaC02g12214' => 'bca', 'BcaC04g24101' => 'bca', 'BcaC05g29520' => 'bca', 'BcaC05g29661' => 'bca', 'BcaC06g32130' => 'bca', 'BcaC06g32131' => 'bca', 'BcaC07g40601' => 'bca', 'BcaC07g42641' => 'bca', 'BcaNung01038' => 'bca', 'BcaNung01676' => 'bca', 'BcaNung02480' => 'bca', 'BcaNung07376' => 'bca', 'BolC3t16146H' => 'bol', 'BolC3t16637H' => 'bol', 'BolC4t22257H' => 'bol', 'BolC4t24728H' => 'bol', 'BolC5t34517H' => 'bol', 'BolC7t45703H' => 'bol', 'BolC8t51166H' => 'bol', 'BolC9t53038H' => 'bol', 'BolC9t60000H' => 'bol', 'BraA01t01345Z' => 'bra', 'BraA01t01346Z' => 'bra', 'BraA01t01348Z' => 'bra', 'BraA03t12347Z' => 'bra', 'BraA03t12775Z' => 'bra', 'BraA03t14439Z' => 'bra', 'BraA04t15860Z' => 'bra', 'BraA05t19511Z' => 'bra', 'BraA05t22746Z' => 'bra', 'BraA09t35767Z' => 'bra', 'BraA09t40732Z' => 'bra', 'BraA10t45233Z' => 'bra', 'C03p38720' => 'bna', 'C03p43680' => 'bna', 'C04p06350' => 'bna', 'C04p31800' => 'bna', 'C05p58680' => 'bna', 'C07p52110' => 'bna', 'C08p35760' => 'bna', 'C09p01050' => 'bna', 'C09p72600' => 'bna', 'CAN.G106.2' => 'can', 'CAN.G1482.1' => 'can', 'CAN.G324.12' => 'can', 'CAN.G388.20' => 'can', 'CAN.G412.7' => 'can', 'CAN.G694.32' => 'can', 'CAN.G92.12' => 'can', 'CANSAT11G2353' => 'cansat', 'CANSAT21G1398' => 'cansat', 'CANSAT56G2456' => 'cansat', 'CANSAT56G3031' => 'cansat', 'CANSAT56G4539' => 'cansat', 'CARHR083680' => 'chi', 'CARHR171190' => 'chi', 'CARHR209010' => 'chi', 'CARHR229680' => 'chi', 'CARHR249490' => 'chi', 'Carub.0003s0844' => 'cru', 'Carub.0005s2755' => 'cru', 'Carub.0006s0322' => 'cru', 'Carub.0006s3586' => 'cru', 'Carub.0007s1855' => 'cru', 'Ca_07808_v3' => 'car', 'Ca_09535_v3' => 'car', 'Ca_10548_v3' => 'car', 'Ca_19913_v3' => 'car', 'Ca_19916_v3' => 'car', 'Ca_19975_v3' => 'car', 'CBR_g22876' => 'cbr', 'CBR_g22879' => 'cbr', 'CBR_g38491' => 'cbr', 'CBR_g54185' => 'cbr', 'CBR_g54190' => 'cbr', 'Cc02_g11020' => 'ccan', 'Cc02_g23920' => 'ccan', 'Cc02_g39860' => 'ccan', 'Cc02_g39870' => 'ccan', 'Cc03_g06760' => 'ccan', 'Cc06_g02450' => 'ccan', 'Cc09_g09450' => 'ccan', 'CDE02G1959' => 'cde', 'CDE04G0600' => 'cde', 'CDE07G1996' => 'cde', 'CDE07G2078' => 'cde', 'CDE11G0611' => 'cde', 'Cfa001683' => 'cfa', 'Cfa001734' => 'cfa', 'Cfa001737' => 'cfa', 'Cfa003751' => 'cfa', 'Cfa012019' => 'cfa', 'Cfa017353' => 'cfa', 'Cfa017732' => 'cfa', 'Cfa022464' => 'cfa', 'Ciclev10012400m.g' => 'ccl', 'Ciclev10021242m.g' => 'ccl', 'Ciclev10021302m.g' => 'ccl', 'Ciclev10021463m.g' => 'ccl', 'Ciclev10032359m.g' => 'ccl', 'CiPaw.01G081000' => 'cil', 'CiPaw.01G262500' => 'cil', 'CiPaw.01G269800' => 'cil', 'CiPaw.02G168400' => 'cil', 'CiPaw.05G119500' => 'cil', 'CiPaw.11G147300' => 'cil', 'ClCG01G003630' => 'cla', 'ClCG05G000510' => 'cla', 'ClCG05G002300' => 'cla', 'ClCG08G007650' => 'cla', 'ClCG10G021250' => 'cla', 'COL.COLO4_06218' => 'col', 'COL.COLO4_12538' => 'col', 'COL.COLO4_14775' => 'col', 'COL.COLO4_23875' => 'col', 'Cpa.g.sc141.16' => 'cpa', 'Cpa.g.sc169.16' => 'cpa', 'Cpa.g.sc244.4' => 'cpa', 'Cpa.g.sc244.5' => 'cpa', 'Cpa.g.sc29.87' => 'cpa', 'Cpa.g.sc53.115' => 'cpa', 'Cre03.g207502' => 'cre', 'Cre06.g277000' => 'cre', 'Cre09.g394050' => 'cre', 'CsaV3_3G007680' => 'csa', 'CsaV3_3G009710' => 'csa', 'CsaV3_3G034790' => 'csa', 'CsaV3_5G003750' => 'csa', 'CsaV3_6G036620' => 'csa', 'CSS0002288' => 'camsi', 'CSS0011250' => 'camsi', 'CSS0021619' => 'camsi', 'CSS0046701' => 'camsi', 'DCAR_006420' => 'dca', 'DCAR_006865' => 'dca', 'DCAR_008558' => 'dca', 'DCAR_028754' => 'dca', 'DCAR_028755' => 'dca', 'Dinv31218' => 'din', 'Dinv32371' => 'din', 'Dinv34250' => 'din', 'Dinv37156' => 'din', 'Dinv43704' => 'din', 'Duzib093G1811' => 'dzi', 'Duzib106G1622' => 'dzi', 'Duzib114G0504' => 'dzi', 'Duzib128G0338' => 'dzi', 'Duzib128G1577' => 'dzi', 'Duzib133G0104' => 'dzi', 'Duzib133G1080' => 'dzi', 'Duzib138G0324' => 'dzi', 'Duzib138G0394' => 'dzi', 'Duzib205G0122' => 'dzi', 'Duzib268G1020' => 'dzi', 'Duzib268G1359' => 'dzi', 'ECA232G3929' => 'eca', 'ECA236G2210' => 'eca', 'ECA236G2287' => 'eca', 'ECA240G4568' => 'eca', 'ECA247G0894' => 'eca', 'EL10Ac1g00200' => 'bvu', 'EL10Ac1g00886' => 'bvu', 'EL10As1g23091' => 'bvu', 'EL10As1g23092' => 'bvu', 'Eucgr.A01284' => 'egr', 'Eucgr.A01285' => 'egr', 'Eucgr.D02456' => 'egr', 'Eucgr.E00018' => 'egr', 'Eucgr.E01439' => 'egr', 'Eucgr.G02859' => 'egr', 'FAN01G0168' => 'fan', 'FAN01G0453' => 'fan', 'FAN01G2761' => 'fan', 'FAN02G1239' => 'fan', 'FAN03G0645' => 'fan', 'FAN03G2707' => 'fan', 'FAN03G2978' => 'fan', 'FAN04G0227' => 'fan', 'FAN06G0091' => 'fan', 'FAN06G1418' => 'fan', 'FAN06G1512' => 'fan', 'FAN06G1986' => 'fan', 'FAN06G2905' => 'fan', 'FAN06G4325' => 'fan', 'FAN08G0033' => 'fan', 'FAN09G0642' => 'fan', 'FAN10G1763' => 'fan', 'FAN10G2026' => 'fan', 'FAN10G2513' => 'fan', 'FAN10G3402' => 'fan', 'FAN10G3564' => 'fan', 'FAN10G3987' => 'fan', 'FAN13G1490' => 'fan', 'FAN14G5857' => 'fan', 'FAN18G1188' => 'fan', 'FvH4_5g00750' => 'fve', 'FvH4_6g13410' => 'fve', 'FvH4_7g11740' => 'fve', 'FvH4_7g17410' => 'fve', 'FvH4_7g18860' => 'fve', 'Glyma.01G099100' => 'gma', 'Glyma.01G142300' => 'gma', 'Glyma.03G025500' => 'gma', 'Glyma.03G069700' => 'gma', 'Glyma.03G260000' => 'gma', 'Glyma.09G269800' => 'gma', 'Glyma.10G208700' => 'gma', 'Glyma.18G220400' => 'gma', 'Glyma.20G182000' => 'gma', 'Gohir.A01G221726' => 'ghi', 'Gohir.A07G134600' => 'ghi', 'Gohir.A07G146000' => 'ghi', 'Gohir.A08G173900' => 'ghi', 'Gohir.A09G194900' => 'ghi', 'Gohir.A10G204100' => 'ghi', 'Gohir.A11G080600' => 'ghi', 'Gohir.A11G327500' => 'ghi', 'Gohir.A12G101800' => 'ghi', 'Gohir.D01G211200' => 'ghi', 'Gohir.D07G139200' => 'ghi', 'Gohir.D07G152100' => 'ghi', 'Gohir.D08G192600' => 'ghi', 'Gohir.D09G189200' => 'ghi', 'Gohir.D10G212000' => 'ghi', 'Gohir.D11G085200' => 'ghi', 'Gohir.D11G346400' => 'ghi', 'Gohir.D12G104800' => 'ghi', 'Gorai.001G151300' => 'gra', 'Gorai.001G174100' => 'gra', 'Gorai.002G257000' => 'gra', 'Gorai.004G202600' => 'gra', 'Gorai.007G090900' => 'gra', 'Gorai.007G376700' => 'gra', 'Gorai.008G114100' => 'gra', 'Gorai.011G237900' => 'gra', 'GSVIVG01005450001' => 'vvi', 'GSVIVG01016232001' => 'vvi', 'GSVIVG01026157001' => 'vvi', 'GSVIVG01027419001' => 'vvi', 'GSVIVG01027631001' => 'vvi', 'GSVIVG01034143001' => 'vvi', 'HanXRQChr03g0093921' => 'han', 'HanXRQChr04g0120001' => 'han', 'HanXRQChr04g0122561' => 'han', 'HanXRQChr09g0246851' => 'han', 'HanXRQChr10g0293311' => 'han', 'HanXRQChr13g0425231' => 'han', 'HanXRQChr16g0532571' => 'han', 'Haze_09050' => 'cav', 'Haze_15715' => 'cav', 'Haze_15716' => 'cav', 'Haze_16803' => 'cav', 'Haze_16850' => 'cav', 'Hma1.2p1_0301F.1_g118655' => 'hma', 'Hma1.2p1_0309F.1_g120590' => 'hma', 'Hma1.2p1_0936F.1_g238900' => 'hma', 'Hma1.2p1_3552F.1_g336740' => 'hma', 'HPP92_003520' => 'vpl', 'HPP92_006628' => 'vpl', 'HPP92_006645' => 'vpl', 'HPP92_014669' => 'vpl', 'HPP92_015077' => 'vpl', 'Hund16742' => 'sun', 'Hund17022' => 'sun', 'Lalb_Chr02g0152131' => 'lal', 'Lalb_Chr05g0225371' => 'lal', 'Lalb_Chr07g0189841' => 'lal', 'Lalb_Chr07g0192961' => 'lal', 'Lalb_Chr12g0208221' => 'lal', 'Lalb_Chr13g0291211' => 'lal', 'Lalb_Chr13g0291781' => 'lal', 'Lalb_Chr18g0044651' => 'lal', 'Lalb_Chr21g0313731' => 'lal', 'Lj1g0022533' => 'lja', 'Lj2A18T50' => 'lonja', 'Lj2A92G93' => 'lonja', 'Lj3A965T73' => 'lonja', 'Lj3g0000673' => 'lja', 'Lj3g0002666' => 'lja', 'Lj4g0016985' => 'lja', 'Lj5g0003625' => 'lja', 'Lj7A529G36' => 'lonja', 'Lj9A569T49' => 'lonja', 'Lj9A604T63' => 'lonja', 'Lsat_1_v5_gn_3_132060' => 'lsa', 'Lsat_1_v5_gn_4_68941' => 'lsa', 'Lsat_1_v5_gn_5_95580' => 'lsa', 'Lsat_1_v5_gn_7_161' => 'lsa', 'Lsat_1_v5_gn_7_7041' => 'lsa', 'Lsat_1_v5_gn_9_33481' => 'lsa', 'Lsat_1_v5_gn_9_68260' => 'lsa', 'Manes.01G073100' => 'mes', 'Manes.01G266300' => 'mes', 'Manes.02G033300' => 'mes', 'Manes.05G017900' => 'mes', 'Manes.05G046100' => 'mes', 'Manes.08G080900' => 'mes', 'Manes.10G049400' => 'mes', 'Mapoly0009s0186' => 'mpo', 'Mapoly0036s0118' => 'mpo', 'Mapoly0101s0046' => 'mpo', 'MBI04_g30218_MAGBIO' => 'mbi', 'MBI04_g35564_MAGBIO' => 'mbi', 'MBI12_g34011_MAGBIO' => 'mbi', 'MBI14_g04655_MAGBIO' => 'mbi', 'MCO07G653' => 'mco', 'MCO10G173' => 'mco', 'MD01G1087100' => 'mdo', 'MD01G1104200' => 'mdo', 'MD02G1205100' => 'mdo', 'MD04G1079200' => 'mdo', 'MD04G1131400' => 'mdo', 'MD07G1121600' => 'mdo', 'MD07G1157300' => 'mdo', 'MD07G1171000' => 'mdo', 'MD12G1144500' => 'mdo', 'Medtr1g094610' => 'mtr', 'Medtr4g021795' => 'mtr', 'Medtr4g023760' => 'mtr', 'Medtr7g118050' => 'mtr', 'MELO3C005582.2' => 'cme', 'MELO3C005989.2' => 'cme', 'MELO3C006192.2' => 'cme', 'MELO3C009248.2' => 'cme', 'MELO3C019817.2' => 'cme', 'Migut.B01625' => 'egut', 'Migut.B01915' => 'egut', 'Migut.F01721' => 'egut', 'Migut.J00314' => 'egut', 'MSTRG.20742' => 'ama', 'MSTRG.8134' => 'ama', 'Nitab4.5_0000096g0010' => 'nta', 'Nitab4.5_0000202g0030' => 'nta', 'Nitab4.5_0000216g0370' => 'nta', 'Nitab4.5_0000457g0230' => 'nta', 'Nitab4.5_0001702g0170' => 'nta', 'Nitab4.5_0003607g0010' => 'nta', 'Nitab4.5_0004917g0020' => 'nta', 'Nitab4.5_0007059g0010' => 'nta', 'Nitab4.5_0007184g0010' => 'nta', 'Nitab4.5_0007346g0020' => 'nta', 'Nn1g00410' => 'nnu', 'Nn1g01252' => 'nnu', 'Nn2g11168' => 'nnu', 'Nn2g13403' => 'nnu', 'Nn2g13760' => 'nnu', 'Nn4g26380' => 'nnu', 'Oeu000806.2' => 'oeu', 'Oeu005788.1' => 'oeu', 'Oeu006900.3' => 'oeu', 'Oeu007797.1' => 'oeu', 'Oeu011932.1' => 'oeu', 'Oeu022739.1' => 'oeu', 'Oeu037918.1' => 'oeu', 'Oeu055490.2' => 'oeu', 'Os01g0844400' => 'osa', 'Os02g0819100' => 'osa', 'Os03g0804300' => 'osa', 'Os05g0458000' => 'osa', 'Os07g0467800' => 'osa', 'Os12g0602200' => 'osa', 'Peaxi162Scf00013g03444' => 'pax', 'Peaxi162Scf00094g01120' => 'pax', 'Peaxi162Scf00191g01211' => 'pax', 'Peaxi162Scf00238g01110' => 'pax', 'Peaxi162Scf00330g00719' => 'pax', 'Peaxi162Scf00627g00018' => 'pax', 'PGR031G2686' => 'pgr', 'PGR042G0809' => 'pgr', 'PGR142G0193' => 'pgr', 'PGSC0003DMG400011066' => 'stu', 'PGSC0003DMG400012041' => 'stu', 'PGSC0003DMG400013678' => 'stu', 'PGSC0003DMG400023477' => 'stu', 'PGSC0003DMG400025956' => 'stu', 'PGSC0003DMG401019151' => 'stu', 'Phvul.006G116400' => 'pvu', 'Phvul.007G097300' => 'pvu', 'Phvul.010G015000' => 'pvu', 'Phvul.010G083900' => 'pvu', 'Potri.001G117100' => 'ptr', 'Potri.002G147300' => 'ptr', 'Potri.003G115600' => 'ptr', 'Potri.006G087400' => 'ptr', 'Potri.010G226100' => 'ptr', 'Potri.014G069200' => 'ptr', 'Potri.014G104000' => 'ptr', 'Potri.016G100200' => 'ptr', 'Pp3c10_20450' => 'ppa', 'Pp3c1_42400' => 'ppa', 'Pp3c3_24390' => 'ppa', 'Pp3c3_2860' => 'ppa', 'PRCOL_00003193' => 'pco', 'Prupe.2G144500' => 'ppe', 'Prupe.2G195700' => 'ppe', 'Prupe.2G209800' => 'ppe', 'Prupe.5G080000' => 'ppe', 'Prupe.6G257900' => 'ppe', 'Psat3g001160' => 'psa', 'Psat6g181880' => 'psa', 'Psat7g233720' => 'psa', 'PSO063G7587' => 'pso', 'PSO339G2145' => 'pso', 'PSO339G3369' => 'pso', 'PSO478G2747' => 'pso', 'PSO513G0140' => 'pso', 'PSO782G1614' => 'pso', 'PSO782G4889' => 'pso', 'PSO782G5485' => 'pso', 'PSO801G0241' => 'pso', 'QL07p048854' => 'qlo', 'QL08p046745' => 'qlo', 'QL08p052606' => 'qlo', 'QL08p053414' => 'qlo', 'QL08p054868' => 'qlo', 'RcHm_v2.0_Chr1g0350251' => 'rch', 'RcHm_v2.0_Chr1g0360851' => 'rch', 'RcHm_v2.0_Chr1g0362791' => 'rch', 'RcHm_v2.0_Chr3g0466281' => 'rch', 'RcHm_v2.0_Chr7g0201481' => 'rch', 'Rhsim01G0148600' => 'rsi', 'Rhsim05G0194400' => 'rsi', 'Rhsim07G0000700' => 'rsi', 'Rhsim07G0000800' => 'rsi', 'Rhsim07G0027900' => 'rsi', 'Rhsim09G0149500' => 'rsi', 'RhsimUnG0186900' => 'rsi', 'Sabra01G0089900' => 'sbr', 'Sabra02G0114700' => 'sbr', 'Sabra02G0116300' => 'sbr', 'Sabra03G0080100' => 'sbr', 'Sabra08G0024300' => 'sbr', 'Sabra10G0174300' => 'sbr', 'Sabra14G0048900' => 'sbr', 'Sabra14G0076500' => 'sbr', 'SalBow5G2513' => 'sbo', 'Sc01g0002300' => 'sci', 'Sc01g0004450' => 'sci', 'Sc06g0001680' => 'sci', 'Sc23g0003580' => 'sci', 'Sed0000913' => 'sed', 'Sed0001655' => 'sed', 'Sed0007745' => 'sed', 'Sed0010951' => 'sed', 'Sed0017599' => 'sed', 'Sed0021405' => 'sed', 'Sed0022810' => 'sed', 'SEGI_07099' => 'sgi', 'SEGI_11931' => 'sgi', 'SEGI_13187' => 'sgi', 'SEGI_29958' => 'sgi', 'SEGI_36351' => 'sgi', 'SGA_v2.0_scaffold126G33770' => 'sas', 'SGA_v2.0_scaffold153G37003' => 'sas', 'SGA_v2.0_scaffold2G01359' => 'sas', 'SGA_v2.0_scaffold5G03064' => 'sas', 'SGA_v2.0_scaffold95G28903' => 'sas', 'SHI12701' => 'shi', 'SHI26410' => 'shi', 'SHI38997' => 'shi', 'SHI53759' => 'shi', 'SHI53886' => 'shi', 'SHI54714' => 'shi', 'SMO011G0041' => 'smo', 'SMO146G0251' => 'smo', 'SMO160G0004' => 'smo', 'SMO174G0057' => 'smo', 'SMO244G0089' => 'smo', 'SMO296G0011' => 'smo', 'Solyc01g091280.3' => 'sly', 'Solyc05g047610.3' => 'sly', 'Solyc05g047640.3' => 'sly', 'Solyc05g055630.3' => 'sly', 'Solyc10g018160.2' => 'sly', 'Solyc10g084820.2' => 'sly', 'Solyc10g086565.2' => 'sly', 'Sopen01g037030' => 'spe', 'Sopen05g027920' => 'spe', 'Sopen05g034070' => 'spe', 'Sopen10g007260' => 'spe', 'Sopen10g034260' => 'spe', 'Sopen10g035950' => 'spe', 'Sp3g07710' => 'spa', 'Sp4g27420' => 'spa', 'Sp5g02450' => 'spa', 'Sp6g01280' => 'spa', 'Sp6g38480' => 'spa', 'Sp7g20780' => 'spa', 'TAR374G1413' => 'tar', 'TAR623G1777' => 'tar', 'TAR629G2370' => 'tar', 'TAR633G1759' => 'tar', 'TAR636G3387' => 'tar', 'THA.LOC104802447' => 'tha', 'THA.LOC104813916' => 'tha', 'THA.LOC104816423' => 'tha', 'THA.LOC104817246' => 'tha', 'THA.LOC104825895' => 'tha', 'Thecc.01G335200' => 'tca', 'Thecc.01G377400' => 'tca', 'Thecc.03G262200' => 'tca', 'Thecc.05G036800' => 'tca', 'Thecc.10G080500' => 'tca', 'Thecc.10G080800' => 'tca', 'Thhalv10001560m.g' => 'esa', 'Thhalv10006120m.g' => 'esa', 'Thhalv10014375m.g' => 'esa', 'Thhalv10021264m.g' => 'esa', 'Thhalv10028856m.g' => 'esa', 'TPR.G1914' => 'tpr', 'TPR.G4757' => 'tpr', 'TPR.G5595' => 'tpr', 'TWI14G0952' => 'twi', 'TWI14G1307' => 'twi', 'TWI38G2143' => 'twi', 'TWI59G0826' => 'twi', 'TWI77G0527' => 'twi', 'TWI81G0150' => 'twi', 'unitig_21.g21018' => 'ugi', 'unitig_26.g9725' => 'ugi', 'unitig_744.g24653' => 'ugi', 'unitig_749.g13778' => 'ugi', 'unitig_899.g15035' => 'ugi', 'vmacro04296' => 'vma', 'vmacro04852' => 'vma', 'vmacro13404' => 'vma', 'vmacro20169' => 'vma', 'vmacro21014' => 'vma', 'VMungo0331G0237' => 'vmu', 'VMungo0331G0706' => 'vmu', 'VMungo0331G1361' => 'vmu', 'VMungo0331G1489' => 'vmu', 'VMungo0540G1037' => 'vmu', 'VMungo0720G2487' => 'vmu', 'VMungo0720G2721' => 'vmu', 'Zm00001eb086860' => 'zma', 'Zm00001eb104760' => 'zma', 'Zm00001eb148220' => 'zma', 'Zm00001eb259030' => 'zma', 'Zm00001eb289590' => 'zma', 'Zm00001eb420150' => 'zma' ), 'gf_id' => 'HOM05D000968', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000968' ), 'data_identifier' => 'HOM05D000968', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000968', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p31690' => 'bna', 'A03p36040' => 'bna', 'A03p53730' => 'bna', 'A04p01410' => 'bna', 'A05p05420' => 'bna', 'A05p39630' => 'bna', 'A05p39640' => 'bna', 'A09p00970' => 'bna', 'A09p53060' => 'bna', 'A10p31890' => 'bna', 'Aa31LG10G15040' => 'aar', 'Aa31LG1G21090' => 'aar', 'Aa31LG1G26900' => 'aar', 'Aa31LG3G1820' => 'aar', 'Aa31LG5G1100' => 'aar', 'Aa31LG6G4740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2265' => 'aag', 'Actinidia07998' => 'ach', 'Actinidia11266' => 'ach', 'Actinidia12682' => 'ach', 'Actinidia26479' => 'ach', 'Actinidia31406' => 'ach', 'Actinidia32437' => 'ach', 'Actinidia38862' => 'ach', 'Ah.05g174230' => 'amhyb', 'Ah.05g179070' => 'amhyb', 'Ah.05g179090' => 'amhyb', 'Ah.12g059950' => 'amhyb', 'AL3G20480' => 'aly', 'AL4G44520' => 'aly', 'AL5G43110' => 'aly', 'AL6G13890' => 'aly', 'AL6G52620' => 'aly', 'AL7G30830' => 'aly', 'Aqoxy1G00899' => 'aox', 'Aqoxy5G04333' => 'aox', 'Aqoxy7G00641' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3IZ0NN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4EF6AW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W9P8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79GA3M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C43NQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFCU6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G95YVJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCHK29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LU1UG8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX91RN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGB4B1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8DA0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9H7JI' => 'arhy', 'AT3G09320' => 'ath', 'AT3G60800' => 'ath', 'AT4G00840' => 'ath', 'AT4G22750' => 'ath', 'AT5G04270' => 'ath', 'ATR0090G003' => 'atr', 'ATR0559G349' => 'atr', 'ATR0680G261' => 'atr', 'ATR0810G048' => 'atr', 'Atru.chr12.831' => 'acertr', 'Atru.chr5.303' => 'acertr', 'Atru.chr5.748' => 'acertr', 'Atru.chr8.1999' => 'acertr', 'Atru.chr9.1436' => 'acertr', 'AUR62004211' => 'cqu', 'AUR62004548' => 'cqu', 'AUR62013637' => 'cqu', 'AUR62022662' => 'cqu', 'AUR62025777' => 'cqu', 'AUR62042386' => 'cqu', 'BcaB01g02310' => 'bca', 'BcaB01g06062' => 'bca', 'BcaB02g08975' => 'bca', 'BcaB02g08980' => 'bca', 'BcaC01g04228' => 'bca', 'BcaC01g06830' => 'bca', 'BcaC02g10186' => 'bca', 'BcaC02g12214' => 'bca', 'BcaC04g24101' => 'bca', 'BcaC05g29520' => 'bca', 'BcaC05g29661' => 'bca', 'BcaC06g32130' => 'bca', 'BcaC06g32131' => 'bca', 'BcaC07g40601' => 'bca', 'BcaC07g42641' => 'bca', 'BcaNung01038' => 'bca', 'BcaNung01676' => 'bca', 'BcaNung02480' => 'bca', 'BcaNung07376' => 'bca', 'BolC3t16146H' => 'bol', 'BolC3t16637H' => 'bol', 'BolC4t22257H' => 'bol', 'BolC4t24728H' => 'bol', 'BolC5t34517H' => 'bol', 'BolC7t45703H' => 'bol', 'BolC8t51166H' => 'bol', 'BolC9t53038H' => 'bol', 'BolC9t60000H' => 'bol', 'BraA01t01345Z' => 'bra', 'BraA01t01346Z' => 'bra', 'BraA01t01348Z' => 'bra', 'BraA03t12347Z' => 'bra', 'BraA03t12775Z' => 'bra', 'BraA03t14439Z' => 'bra', 'BraA04t15860Z' => 'bra', 'BraA05t19511Z' => 'bra', 'BraA05t22746Z' => 'bra', 'BraA09t35767Z' => 'bra', 'BraA09t40732Z' => 'bra', 'BraA10t45233Z' => 'bra', 'C03p38720' => 'bna', 'C03p43680' => 'bna', 'C04p06350' => 'bna', 'C04p31800' => 'bna', 'C05p58680' => 'bna', 'C07p52110' => 'bna', 'C08p35760' => 'bna', 'C09p01050' => 'bna', 'C09p72600' => 'bna', 'CAN.G106.2' => 'can', 'CAN.G1482.1' => 'can', 'CAN.G324.12' => 'can', 'CAN.G388.20' => 'can', 'CAN.G412.7' => 'can', 'CAN.G694.32' => 'can', 'CAN.G92.12' => 'can', 'CANSAT11G2353' => 'cansat', 'CANSAT21G1398' => 'cansat', 'CANSAT56G2456' => 'cansat', 'CANSAT56G3031' => 'cansat', 'CANSAT56G4539' => 'cansat', 'CARHR083680' => 'chi', 'CARHR171190' => 'chi', 'CARHR209010' => 'chi', 'CARHR229680' => 'chi', 'CARHR249490' => 'chi', 'Carub.0003s0844' => 'cru', 'Carub.0005s2755' => 'cru', 'Carub.0006s0322' => 'cru', 'Carub.0006s3586' => 'cru', 'Carub.0007s1855' => 'cru', 'Ca_07808_v3' => 'car', 'Ca_09535_v3' => 'car', 'Ca_10548_v3' => 'car', 'Ca_19913_v3' => 'car', 'Ca_19916_v3' => 'car', 'Ca_19975_v3' => 'car', 'CBR_g22876' => 'cbr', 'CBR_g22879' => 'cbr', 'CBR_g38491' => 'cbr', 'CBR_g54185' => 'cbr', 'CBR_g54190' => 'cbr', 'Cc02_g11020' => 'ccan', 'Cc02_g23920' => 'ccan', 'Cc02_g39860' => 'ccan', 'Cc02_g39870' => 'ccan', 'Cc03_g06760' => 'ccan', 'Cc06_g02450' => 'ccan', 'Cc09_g09450' => 'ccan', 'CDE02G1959' => 'cde', 'CDE04G0600' => 'cde', 'CDE07G1996' => 'cde', 'CDE07G2078' => 'cde', 'CDE11G0611' => 'cde', 'Cfa001683' => 'cfa', 'Cfa001734' => 'cfa', 'Cfa001737' => 'cfa', 'Cfa003751' => 'cfa', 'Cfa012019' => 'cfa', 'Cfa017353' => 'cfa', 'Cfa017732' => 'cfa', 'Cfa022464' => 'cfa', 'Ciclev10012400m.g' => 'ccl', 'Ciclev10021242m.g' => 'ccl', 'Ciclev10021302m.g' => 'ccl', 'Ciclev10021463m.g' => 'ccl', 'Ciclev10032359m.g' => 'ccl', 'CiPaw.01G081000' => 'cil', 'CiPaw.01G262500' => 'cil', 'CiPaw.01G269800' => 'cil', 'CiPaw.02G168400' => 'cil', 'CiPaw.05G119500' => 'cil', 'CiPaw.11G147300' => 'cil', 'ClCG01G003630' => 'cla', 'ClCG05G000510' => 'cla', 'ClCG05G002300' => 'cla', 'ClCG08G007650' => 'cla', 'ClCG10G021250' => 'cla', 'COL.COLO4_06218' => 'col', 'COL.COLO4_12538' => 'col', 'COL.COLO4_14775' => 'col', 'COL.COLO4_23875' => 'col', 'Cpa.g.sc141.16' => 'cpa', 'Cpa.g.sc169.16' => 'cpa', 'Cpa.g.sc244.4' => 'cpa', 'Cpa.g.sc244.5' => 'cpa', 'Cpa.g.sc29.87' => 'cpa', 'Cpa.g.sc53.115' => 'cpa', 'Cre03.g207502' => 'cre', 'Cre06.g277000' => 'cre', 'Cre09.g394050' => 'cre', 'CsaV3_3G007680' => 'csa', 'CsaV3_3G009710' => 'csa', 'CsaV3_3G034790' => 'csa', 'CsaV3_5G003750' => 'csa', 'CsaV3_6G036620' => 'csa', 'CSS0002288' => 'camsi', 'CSS0011250' => 'camsi', 'CSS0021619' => 'camsi', 'CSS0046701' => 'camsi', 'DCAR_006420' => 'dca', 'DCAR_006865' => 'dca', 'DCAR_008558' => 'dca', 'DCAR_028754' => 'dca', 'DCAR_028755' => 'dca', 'Dinv31218' => 'din', 'Dinv32371' => 'din', 'Dinv34250' => 'din', 'Dinv37156' => 'din', 'Dinv43704' => 'din', 'Duzib093G1811' => 'dzi', 'Duzib106G1622' => 'dzi', 'Duzib114G0504' => 'dzi', 'Duzib128G0338' => 'dzi', 'Duzib128G1577' => 'dzi', 'Duzib133G0104' => 'dzi', 'Duzib133G1080' => 'dzi', 'Duzib138G0324' => 'dzi', 'Duzib138G0394' => 'dzi', 'Duzib205G0122' => 'dzi', 'Duzib268G1020' => 'dzi', 'Duzib268G1359' => 'dzi', 'ECA232G3929' => 'eca', 'ECA236G2210' => 'eca', 'ECA236G2287' => 'eca', 'ECA240G4568' => 'eca', 'ECA247G0894' => 'eca', 'EL10Ac1g00200' => 'bvu', 'EL10Ac1g00886' => 'bvu', 'EL10As1g23091' => 'bvu', 'EL10As1g23092' => 'bvu', 'Eucgr.A01284' => 'egr', 'Eucgr.A01285' => 'egr', 'Eucgr.D02456' => 'egr', 'Eucgr.E00018' => 'egr', 'Eucgr.E01439' => 'egr', 'Eucgr.G02859' => 'egr', 'FAN01G0168' => 'fan', 'FAN01G0453' => 'fan', 'FAN01G2761' => 'fan', 'FAN02G1239' => 'fan', 'FAN03G0645' => 'fan', 'FAN03G2707' => 'fan', 'FAN03G2978' => 'fan', 'FAN04G0227' => 'fan', 'FAN06G0091' => 'fan', 'FAN06G1418' => 'fan', 'FAN06G1512' => 'fan', 'FAN06G1986' => 'fan', 'FAN06G2905' => 'fan', 'FAN06G4325' => 'fan', 'FAN08G0033' => 'fan', 'FAN09G0642' => 'fan', 'FAN10G1763' => 'fan', 'FAN10G2026' => 'fan', 'FAN10G2513' => 'fan', 'FAN10G3402' => 'fan', 'FAN10G3564' => 'fan', 'FAN10G3987' => 'fan', 'FAN13G1490' => 'fan', 'FAN14G5857' => 'fan', 'FAN18G1188' => 'fan', 'FvH4_5g00750' => 'fve', 'FvH4_6g13410' => 'fve', 'FvH4_7g11740' => 'fve', 'FvH4_7g17410' => 'fve', 'FvH4_7g18860' => 'fve', 'Glyma.01G099100' => 'gma', 'Glyma.01G142300' => 'gma', 'Glyma.03G025500' => 'gma', 'Glyma.03G069700' => 'gma', 'Glyma.03G260000' => 'gma', 'Glyma.09G269800' => 'gma', 'Glyma.10G208700' => 'gma', 'Glyma.18G220400' => 'gma', 'Glyma.20G182000' => 'gma', 'Gohir.A01G221726' => 'ghi', 'Gohir.A07G134600' => 'ghi', 'Gohir.A07G146000' => 'ghi', 'Gohir.A08G173900' => 'ghi', 'Gohir.A09G194900' => 'ghi', 'Gohir.A10G204100' => 'ghi', 'Gohir.A11G080600' => 'ghi', 'Gohir.A11G327500' => 'ghi', 'Gohir.A12G101800' => 'ghi', 'Gohir.D01G211200' => 'ghi', 'Gohir.D07G139200' => 'ghi', 'Gohir.D07G152100' => 'ghi', 'Gohir.D08G192600' => 'ghi', 'Gohir.D09G189200' => 'ghi', 'Gohir.D10G212000' => 'ghi', 'Gohir.D11G085200' => 'ghi', 'Gohir.D11G346400' => 'ghi', 'Gohir.D12G104800' => 'ghi', 'Gorai.001G151300' => 'gra', 'Gorai.001G174100' => 'gra', 'Gorai.002G257000' => 'gra', 'Gorai.004G202600' => 'gra', 'Gorai.007G090900' => 'gra', 'Gorai.007G376700' => 'gra', 'Gorai.008G114100' => 'gra', 'Gorai.011G237900' => 'gra', 'GSVIVG01005450001' => 'vvi', 'GSVIVG01016232001' => 'vvi', 'GSVIVG01026157001' => 'vvi', 'GSVIVG01027419001' => 'vvi', 'GSVIVG01027631001' => 'vvi', 'GSVIVG01034143001' => 'vvi', 'HanXRQChr03g0093921' => 'han', 'HanXRQChr04g0120001' => 'han', 'HanXRQChr04g0122561' => 'han', 'HanXRQChr09g0246851' => 'han', 'HanXRQChr10g0293311' => 'han', 'HanXRQChr13g0425231' => 'han', 'HanXRQChr16g0532571' => 'han', 'Haze_09050' => 'cav', 'Haze_15715' => 'cav', 'Haze_15716' => 'cav', 'Haze_16803' => 'cav', 'Haze_16850' => 'cav', 'Hma1.2p1_0301F.1_g118655' => 'hma', 'Hma1.2p1_0309F.1_g120590' => 'hma', 'Hma1.2p1_0936F.1_g238900' => 'hma', 'Hma1.2p1_3552F.1_g336740' => 'hma', 'HPP92_003520' => 'vpl', 'HPP92_006628' => 'vpl', 'HPP92_006645' => 'vpl', 'HPP92_014669' => 'vpl', 'HPP92_015077' => 'vpl', 'Hund16742' => 'sun', 'Hund17022' => 'sun', 'Lalb_Chr02g0152131' => 'lal', 'Lalb_Chr05g0225371' => 'lal', 'Lalb_Chr07g0189841' => 'lal', 'Lalb_Chr07g0192961' => 'lal', 'Lalb_Chr12g0208221' => 'lal', 'Lalb_Chr13g0291211' => 'lal', 'Lalb_Chr13g0291781' => 'lal', 'Lalb_Chr18g0044651' => 'lal', 'Lalb_Chr21g0313731' => 'lal', 'Lj1g0022533' => 'lja', 'Lj2A18T50' => 'lonja', 'Lj2A92G93' => 'lonja', 'Lj3A965T73' => 'lonja', 'Lj3g0000673' => 'lja', 'Lj3g0002666' => 'lja', 'Lj4g0016985' => 'lja', 'Lj5g0003625' => 'lja', 'Lj7A529G36' => 'lonja', 'Lj9A569T49' => 'lonja', 'Lj9A604T63' => 'lonja', 'Lsat_1_v5_gn_3_132060' => 'lsa', 'Lsat_1_v5_gn_4_68941' => 'lsa', 'Lsat_1_v5_gn_5_95580' => 'lsa', 'Lsat_1_v5_gn_7_161' => 'lsa', 'Lsat_1_v5_gn_7_7041' => 'lsa', 'Lsat_1_v5_gn_9_33481' => 'lsa', 'Lsat_1_v5_gn_9_68260' => 'lsa', 'Manes.01G073100' => 'mes', 'Manes.01G266300' => 'mes', 'Manes.02G033300' => 'mes', 'Manes.05G017900' => 'mes', 'Manes.05G046100' => 'mes', 'Manes.08G080900' => 'mes', 'Manes.10G049400' => 'mes', 'Mapoly0009s0186' => 'mpo', 'Mapoly0036s0118' => 'mpo', 'Mapoly0101s0046' => 'mpo', 'MBI04_g30218_MAGBIO' => 'mbi', 'MBI04_g35564_MAGBIO' => 'mbi', 'MBI12_g34011_MAGBIO' => 'mbi', 'MBI14_g04655_MAGBIO' => 'mbi', 'MCO07G653' => 'mco', 'MCO10G173' => 'mco', 'MD01G1087100' => 'mdo', 'MD01G1104200' => 'mdo', 'MD02G1205100' => 'mdo', 'MD04G1079200' => 'mdo', 'MD04G1131400' => 'mdo', 'MD07G1121600' => 'mdo', 'MD07G1157300' => 'mdo', 'MD07G1171000' => 'mdo', 'MD12G1144500' => 'mdo', 'Medtr1g094610' => 'mtr', 'Medtr4g021795' => 'mtr', 'Medtr4g023760' => 'mtr', 'Medtr7g118050' => 'mtr', 'MELO3C005582.2' => 'cme', 'MELO3C005989.2' => 'cme', 'MELO3C006192.2' => 'cme', 'MELO3C009248.2' => 'cme', 'MELO3C019817.2' => 'cme', 'Migut.B01625' => 'egut', 'Migut.B01915' => 'egut', 'Migut.F01721' => 'egut', 'Migut.J00314' => 'egut', 'MSTRG.20742' => 'ama', 'MSTRG.8134' => 'ama', 'Nitab4.5_0000096g0010' => 'nta', 'Nitab4.5_0000202g0030' => 'nta', 'Nitab4.5_0000216g0370' => 'nta', 'Nitab4.5_0000457g0230' => 'nta', 'Nitab4.5_0001702g0170' => 'nta', 'Nitab4.5_0003607g0010' => 'nta', 'Nitab4.5_0004917g0020' => 'nta', 'Nitab4.5_0007059g0010' => 'nta', 'Nitab4.5_0007184g0010' => 'nta', 'Nitab4.5_0007346g0020' => 'nta', 'Nn1g00410' => 'nnu', 'Nn1g01252' => 'nnu', 'Nn2g11168' => 'nnu', 'Nn2g13403' => 'nnu', 'Nn2g13760' => 'nnu', 'Nn4g26380' => 'nnu', 'Oeu000806.2' => 'oeu', 'Oeu005788.1' => 'oeu', 'Oeu006900.3' => 'oeu', 'Oeu007797.1' => 'oeu', 'Oeu011932.1' => 'oeu', 'Oeu022739.1' => 'oeu', 'Oeu037918.1' => 'oeu', 'Oeu055490.2' => 'oeu', 'Os01g0844400' => 'osa', 'Os02g0819100' => 'osa', 'Os03g0804300' => 'osa', 'Os05g0458000' => 'osa', 'Os07g0467800' => 'osa', 'Os12g0602200' => 'osa', 'Peaxi162Scf00013g03444' => 'pax', 'Peaxi162Scf00094g01120' => 'pax', 'Peaxi162Scf00191g01211' => 'pax', 'Peaxi162Scf00238g01110' => 'pax', 'Peaxi162Scf00330g00719' => 'pax', 'Peaxi162Scf00627g00018' => 'pax', 'PGR031G2686' => 'pgr', 'PGR042G0809' => 'pgr', 'PGR142G0193' => 'pgr', 'PGSC0003DMG400011066' => 'stu', 'PGSC0003DMG400012041' => 'stu', 'PGSC0003DMG400013678' => 'stu', 'PGSC0003DMG400023477' => 'stu', 'PGSC0003DMG400025956' => 'stu', 'PGSC0003DMG401019151' => 'stu', 'Phvul.006G116400' => 'pvu', 'Phvul.007G097300' => 'pvu', 'Phvul.010G015000' => 'pvu', 'Phvul.010G083900' => 'pvu', 'Potri.001G117100' => 'ptr', 'Potri.002G147300' => 'ptr', 'Potri.003G115600' => 'ptr', 'Potri.006G087400' => 'ptr', 'Potri.010G226100' => 'ptr', 'Potri.014G069200' => 'ptr', 'Potri.014G104000' => 'ptr', 'Potri.016G100200' => 'ptr', 'Pp3c10_20450' => 'ppa', 'Pp3c1_42400' => 'ppa', 'Pp3c3_24390' => 'ppa', 'Pp3c3_2860' => 'ppa', 'PRCOL_00003193' => 'pco', 'Prupe.2G144500' => 'ppe', 'Prupe.2G195700' => 'ppe', 'Prupe.2G209800' => 'ppe', 'Prupe.5G080000' => 'ppe', 'Prupe.6G257900' => 'ppe', 'Psat3g001160' => 'psa', 'Psat6g181880' => 'psa', 'Psat7g233720' => 'psa', 'PSO063G7587' => 'pso', 'PSO339G2145' => 'pso', 'PSO339G3369' => 'pso', 'PSO478G2747' => 'pso', 'PSO513G0140' => 'pso', 'PSO782G1614' => 'pso', 'PSO782G4889' => 'pso', 'PSO782G5485' => 'pso', 'PSO801G0241' => 'pso', 'QL07p048854' => 'qlo', 'QL08p046745' => 'qlo', 'QL08p052606' => 'qlo', 'QL08p053414' => 'qlo', 'QL08p054868' => 'qlo', 'RcHm_v2.0_Chr1g0350251' => 'rch', 'RcHm_v2.0_Chr1g0360851' => 'rch', 'RcHm_v2.0_Chr1g0362791' => 'rch', 'RcHm_v2.0_Chr3g0466281' => 'rch', 'RcHm_v2.0_Chr7g0201481' => 'rch', 'Rhsim01G0148600' => 'rsi', 'Rhsim05G0194400' => 'rsi', 'Rhsim07G0000700' => 'rsi', 'Rhsim07G0000800' => 'rsi', 'Rhsim07G0027900' => 'rsi', 'Rhsim09G0149500' => 'rsi', 'RhsimUnG0186900' => 'rsi', 'Sabra01G0089900' => 'sbr', 'Sabra02G0114700' => 'sbr', 'Sabra02G0116300' => 'sbr', 'Sabra03G0080100' => 'sbr', 'Sabra08G0024300' => 'sbr', 'Sabra10G0174300' => 'sbr', 'Sabra14G0048900' => 'sbr', 'Sabra14G0076500' => 'sbr', 'SalBow5G2513' => 'sbo', 'Sc01g0002300' => 'sci', 'Sc01g0004450' => 'sci', 'Sc06g0001680' => 'sci', 'Sc23g0003580' => 'sci', 'Sed0000913' => 'sed', 'Sed0001655' => 'sed', 'Sed0007745' => 'sed', 'Sed0010951' => 'sed', 'Sed0017599' => 'sed', 'Sed0021405' => 'sed', 'Sed0022810' => 'sed', 'SEGI_07099' => 'sgi', 'SEGI_11931' => 'sgi', 'SEGI_13187' => 'sgi', 'SEGI_29958' => 'sgi', 'SEGI_36351' => 'sgi', 'SGA_v2.0_scaffold126G33770' => 'sas', 'SGA_v2.0_scaffold153G37003' => 'sas', 'SGA_v2.0_scaffold2G01359' => 'sas', 'SGA_v2.0_scaffold5G03064' => 'sas', 'SGA_v2.0_scaffold95G28903' => 'sas', 'SHI12701' => 'shi', 'SHI26410' => 'shi', 'SHI38997' => 'shi', 'SHI53759' => 'shi', 'SHI53886' => 'shi', 'SHI54714' => 'shi', 'SMO011G0041' => 'smo', 'SMO146G0251' => 'smo', 'SMO160G0004' => 'smo', 'SMO174G0057' => 'smo', 'SMO244G0089' => 'smo', 'SMO296G0011' => 'smo', 'Solyc01g091280.3' => 'sly', 'Solyc05g047610.3' => 'sly', 'Solyc05g047640.3' => 'sly', 'Solyc05g055630.3' => 'sly', 'Solyc10g018160.2' => 'sly', 'Solyc10g084820.2' => 'sly', 'Solyc10g086565.2' => 'sly', 'Sopen01g037030' => 'spe', 'Sopen05g027920' => 'spe', 'Sopen05g034070' => 'spe', 'Sopen10g007260' => 'spe', 'Sopen10g034260' => 'spe', 'Sopen10g035950' => 'spe', 'Sp3g07710' => 'spa', 'Sp4g27420' => 'spa', 'Sp5g02450' => 'spa', 'Sp6g01280' => 'spa', 'Sp6g38480' => 'spa', 'Sp7g20780' => 'spa', 'TAR374G1413' => 'tar', 'TAR623G1777' => 'tar', 'TAR629G2370' => 'tar', 'TAR633G1759' => 'tar', 'TAR636G3387' => 'tar', 'THA.LOC104802447' => 'tha', 'THA.LOC104813916' => 'tha', 'THA.LOC104816423' => 'tha', 'THA.LOC104817246' => 'tha', 'THA.LOC104825895' => 'tha', 'Thecc.01G335200' => 'tca', 'Thecc.01G377400' => 'tca', 'Thecc.03G262200' => 'tca', 'Thecc.05G036800' => 'tca', 'Thecc.10G080500' => 'tca', 'Thecc.10G080800' => 'tca', 'Thhalv10001560m.g' => 'esa', 'Thhalv10006120m.g' => 'esa', 'Thhalv10014375m.g' => 'esa', 'Thhalv10021264m.g' => 'esa', 'Thhalv10028856m.g' => 'esa', 'TPR.G1914' => 'tpr', 'TPR.G4757' => 'tpr', 'TPR.G5595' => 'tpr', 'TWI14G0952' => 'twi', 'TWI14G1307' => 'twi', 'TWI38G2143' => 'twi', 'TWI59G0826' => 'twi', 'TWI77G0527' => 'twi', 'TWI81G0150' => 'twi', 'unitig_21.g21018' => 'ugi', 'unitig_26.g9725' => 'ugi', 'unitig_744.g24653' => 'ugi', 'unitig_749.g13778' => 'ugi', 'unitig_899.g15035' => 'ugi', 'vmacro04296' => 'vma', 'vmacro04852' => 'vma', 'vmacro13404' => 'vma', 'vmacro20169' => 'vma', 'vmacro21014' => 'vma', 'VMungo0331G0237' => 'vmu', 'VMungo0331G0706' => 'vmu', 'VMungo0331G1361' => 'vmu', 'VMungo0331G1489' => 'vmu', 'VMungo0540G1037' => 'vmu', 'VMungo0720G2487' => 'vmu', 'VMungo0720G2721' => 'vmu', 'Zm00001eb086860' => 'zma', 'Zm00001eb104760' => 'zma', 'Zm00001eb148220' => 'zma', 'Zm00001eb259030' => 'zma', 'Zm00001eb289590' => 'zma', 'Zm00001eb420150' => 'zma' ) $gf_id = 'HOM05D000968' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000968' ) $data_identifier = 'HOM05D000968' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 19, 'bol' => (int) 9, 'bra' => (int) 12, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 5, 'ccan' => (int) 7, 'cde' => (int) 5, 'cfa' => (int) 8, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 4, 'dca' => (int) 5, 'din' => (int) 5, 'dzi' => (int) 12, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 25, 'fve' => (int) 5, 'gma' => (int) 9, 'ghi' => (int) 18, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 7, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 5, 'sun' => (int) 2, 'lal' => (int) 9, 'lja' => (int) 5, 'lonja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 9, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 2, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 3, 'stu' => (int) 6, 'pvu' => (int) 4, 'ptr' => (int) 8, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 3, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 1, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 5, 'sas' => (int) 5, 'shi' => (int) 6, 'smo' => (int) 6, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 3, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420150' $species_info = array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ) $local_species = 'cru' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000968', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p31690' => 'bna', 'A03p36040' => 'bna', 'A03p53730' => 'bna', 'A04p01410' => 'bna', 'A05p05420' => 'bna', 'A05p39630' => 'bna', 'A05p39640' => 'bna', 'A09p00970' => 'bna', 'A09p53060' => 'bna', 'A10p31890' => 'bna', 'Aa31LG10G15040' => 'aar', 'Aa31LG1G21090' => 'aar', 'Aa31LG1G26900' => 'aar', 'Aa31LG3G1820' => 'aar', 'Aa31LG5G1100' => 'aar', 'Aa31LG6G4740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2265' => 'aag', 'Actinidia07998' => 'ach', 'Actinidia11266' => 'ach', 'Actinidia12682' => 'ach', 'Actinidia26479' => 'ach', 'Actinidia31406' => 'ach', 'Actinidia32437' => 'ach', 'Actinidia38862' => 'ach', 'Ah.05g174230' => 'amhyb', 'Ah.05g179070' => 'amhyb', 'Ah.05g179090' => 'amhyb', 'Ah.12g059950' => 'amhyb', 'AL3G20480' => 'aly', 'AL4G44520' => 'aly', 'AL5G43110' => 'aly', 'AL6G13890' => 'aly', 'AL6G52620' => 'aly', 'AL7G30830' => 'aly', 'Aqoxy1G00899' => 'aox', 'Aqoxy5G04333' => 'aox', 'Aqoxy7G00641' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3IZ0NN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4EF6AW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W9P8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79GA3M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C43NQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFCU6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G95YVJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCHK29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LU1UG8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX91RN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGB4B1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8DA0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9H7JI' => 'arhy', 'AT3G09320' => 'ath', 'AT3G60800' => 'ath', 'AT4G00840' => 'ath', 'AT4G22750' => 'ath', 'AT5G04270' => 'ath', 'ATR0090G003' => 'atr', 'ATR0559G349' => 'atr', 'ATR0680G261' => 'atr', 'ATR0810G048' => 'atr', 'Atru.chr12.831' => 'acertr', 'Atru.chr5.303' => 'acertr', 'Atru.chr5.748' => 'acertr', 'Atru.chr8.1999' => 'acertr', 'Atru.chr9.1436' => 'acertr', 'AUR62004211' => 'cqu', 'AUR62004548' => 'cqu', 'AUR62013637' => 'cqu', 'AUR62022662' => 'cqu', 'AUR62025777' => 'cqu', 'AUR62042386' => 'cqu', 'BcaB01g02310' => 'bca', 'BcaB01g06062' => 'bca', 'BcaB02g08975' => 'bca', 'BcaB02g08980' => 'bca', 'BcaC01g04228' => 'bca', 'BcaC01g06830' => 'bca', 'BcaC02g10186' => 'bca', 'BcaC02g12214' => 'bca', 'BcaC04g24101' => 'bca', 'BcaC05g29520' => 'bca', 'BcaC05g29661' => 'bca', 'BcaC06g32130' => 'bca', 'BcaC06g32131' => 'bca', 'BcaC07g40601' => 'bca', 'BcaC07g42641' => 'bca', 'BcaNung01038' => 'bca', 'BcaNung01676' => 'bca', 'BcaNung02480' => 'bca', 'BcaNung07376' => 'bca', 'BolC3t16146H' => 'bol', 'BolC3t16637H' => 'bol', 'BolC4t22257H' => 'bol', 'BolC4t24728H' => 'bol', 'BolC5t34517H' => 'bol', 'BolC7t45703H' => 'bol', 'BolC8t51166H' => 'bol', 'BolC9t53038H' => 'bol', 'BolC9t60000H' => 'bol', 'BraA01t01345Z' => 'bra', 'BraA01t01346Z' => 'bra', 'BraA01t01348Z' => 'bra', 'BraA03t12347Z' => 'bra', 'BraA03t12775Z' => 'bra', 'BraA03t14439Z' => 'bra', 'BraA04t15860Z' => 'bra', 'BraA05t19511Z' => 'bra', 'BraA05t22746Z' => 'bra', 'BraA09t35767Z' => 'bra', 'BraA09t40732Z' => 'bra', 'BraA10t45233Z' => 'bra', 'C03p38720' => 'bna', 'C03p43680' => 'bna', 'C04p06350' => 'bna', 'C04p31800' => 'bna', 'C05p58680' => 'bna', 'C07p52110' => 'bna', 'C08p35760' => 'bna', 'C09p01050' => 'bna', 'C09p72600' => 'bna', 'CAN.G106.2' => 'can', 'CAN.G1482.1' => 'can', 'CAN.G324.12' => 'can', 'CAN.G388.20' => 'can', 'CAN.G412.7' => 'can', 'CAN.G694.32' => 'can', 'CAN.G92.12' => 'can', 'CANSAT11G2353' => 'cansat', 'CANSAT21G1398' => 'cansat', 'CANSAT56G2456' => 'cansat', 'CANSAT56G3031' => 'cansat', 'CANSAT56G4539' => 'cansat', 'CARHR083680' => 'chi', 'CARHR171190' => 'chi', 'CARHR209010' => 'chi', 'CARHR229680' => 'chi', 'CARHR249490' => 'chi', 'Carub.0003s0844' => 'cru', 'Carub.0005s2755' => 'cru', 'Carub.0006s0322' => 'cru', 'Carub.0006s3586' => 'cru', 'Carub.0007s1855' => 'cru', 'Ca_07808_v3' => 'car', 'Ca_09535_v3' => 'car', 'Ca_10548_v3' => 'car', 'Ca_19913_v3' => 'car', 'Ca_19916_v3' => 'car', 'Ca_19975_v3' => 'car', 'CBR_g22876' => 'cbr', 'CBR_g22879' => 'cbr', 'CBR_g38491' => 'cbr', 'CBR_g54185' => 'cbr', 'CBR_g54190' => 'cbr', 'Cc02_g11020' => 'ccan', 'Cc02_g23920' => 'ccan', 'Cc02_g39860' => 'ccan', 'Cc02_g39870' => 'ccan', 'Cc03_g06760' => 'ccan', 'Cc06_g02450' => 'ccan', 'Cc09_g09450' => 'ccan', 'CDE02G1959' => 'cde', 'CDE04G0600' => 'cde', 'CDE07G1996' => 'cde', 'CDE07G2078' => 'cde', 'CDE11G0611' => 'cde', 'Cfa001683' => 'cfa', 'Cfa001734' => 'cfa', 'Cfa001737' => 'cfa', 'Cfa003751' => 'cfa', 'Cfa012019' => 'cfa', 'Cfa017353' => 'cfa', 'Cfa017732' => 'cfa', 'Cfa022464' => 'cfa', 'Ciclev10012400m.g' => 'ccl', 'Ciclev10021242m.g' => 'ccl', 'Ciclev10021302m.g' => 'ccl', 'Ciclev10021463m.g' => 'ccl', 'Ciclev10032359m.g' => 'ccl', 'CiPaw.01G081000' => 'cil', 'CiPaw.01G262500' => 'cil', 'CiPaw.01G269800' => 'cil', 'CiPaw.02G168400' => 'cil', 'CiPaw.05G119500' => 'cil', 'CiPaw.11G147300' => 'cil', 'ClCG01G003630' => 'cla', 'ClCG05G000510' => 'cla', 'ClCG05G002300' => 'cla', 'ClCG08G007650' => 'cla', 'ClCG10G021250' => 'cla', 'COL.COLO4_06218' => 'col', 'COL.COLO4_12538' => 'col', 'COL.COLO4_14775' => 'col', 'COL.COLO4_23875' => 'col', 'Cpa.g.sc141.16' => 'cpa', 'Cpa.g.sc169.16' => 'cpa', 'Cpa.g.sc244.4' => 'cpa', 'Cpa.g.sc244.5' => 'cpa', 'Cpa.g.sc29.87' => 'cpa', 'Cpa.g.sc53.115' => 'cpa', 'Cre03.g207502' => 'cre', 'Cre06.g277000' => 'cre', 'Cre09.g394050' => 'cre', 'CsaV3_3G007680' => 'csa', 'CsaV3_3G009710' => 'csa', 'CsaV3_3G034790' => 'csa', 'CsaV3_5G003750' => 'csa', 'CsaV3_6G036620' => 'csa', 'CSS0002288' => 'camsi', 'CSS0011250' => 'camsi', 'CSS0021619' => 'camsi', 'CSS0046701' => 'camsi', 'DCAR_006420' => 'dca', 'DCAR_006865' => 'dca', 'DCAR_008558' => 'dca', 'DCAR_028754' => 'dca', 'DCAR_028755' => 'dca', 'Dinv31218' => 'din', 'Dinv32371' => 'din', 'Dinv34250' => 'din', 'Dinv37156' => 'din', 'Dinv43704' => 'din', 'Duzib093G1811' => 'dzi', 'Duzib106G1622' => 'dzi', 'Duzib114G0504' => 'dzi', 'Duzib128G0338' => 'dzi', 'Duzib128G1577' => 'dzi', 'Duzib133G0104' => 'dzi', 'Duzib133G1080' => 'dzi', 'Duzib138G0324' => 'dzi', 'Duzib138G0394' => 'dzi', 'Duzib205G0122' => 'dzi', 'Duzib268G1020' => 'dzi', 'Duzib268G1359' => 'dzi', 'ECA232G3929' => 'eca', 'ECA236G2210' => 'eca', 'ECA236G2287' => 'eca', 'ECA240G4568' => 'eca', 'ECA247G0894' => 'eca', 'EL10Ac1g00200' => 'bvu', 'EL10Ac1g00886' => 'bvu', 'EL10As1g23091' => 'bvu', 'EL10As1g23092' => 'bvu', 'Eucgr.A01284' => 'egr', 'Eucgr.A01285' => 'egr', 'Eucgr.D02456' => 'egr', 'Eucgr.E00018' => 'egr', 'Eucgr.E01439' => 'egr', 'Eucgr.G02859' => 'egr', 'FAN01G0168' => 'fan', 'FAN01G0453' => 'fan', 'FAN01G2761' => 'fan', 'FAN02G1239' => 'fan', 'FAN03G0645' => 'fan', 'FAN03G2707' => 'fan', 'FAN03G2978' => 'fan', 'FAN04G0227' => 'fan', 'FAN06G0091' => 'fan', 'FAN06G1418' => 'fan', 'FAN06G1512' => 'fan', 'FAN06G1986' => 'fan', 'FAN06G2905' => 'fan', 'FAN06G4325' => 'fan', 'FAN08G0033' => 'fan', 'FAN09G0642' => 'fan', 'FAN10G1763' => 'fan', 'FAN10G2026' => 'fan', 'FAN10G2513' => 'fan', 'FAN10G3402' => 'fan', 'FAN10G3564' => 'fan', 'FAN10G3987' => 'fan', 'FAN13G1490' => 'fan', 'FAN14G5857' => 'fan', 'FAN18G1188' => 'fan', 'FvH4_5g00750' => 'fve', 'FvH4_6g13410' => 'fve', 'FvH4_7g11740' => 'fve', 'FvH4_7g17410' => 'fve', 'FvH4_7g18860' => 'fve', 'Glyma.01G099100' => 'gma', 'Glyma.01G142300' => 'gma', 'Glyma.03G025500' => 'gma', 'Glyma.03G069700' => 'gma', 'Glyma.03G260000' => 'gma', 'Glyma.09G269800' => 'gma', 'Glyma.10G208700' => 'gma', 'Glyma.18G220400' => 'gma', 'Glyma.20G182000' => 'gma', 'Gohir.A01G221726' => 'ghi', 'Gohir.A07G134600' => 'ghi', 'Gohir.A07G146000' => 'ghi', 'Gohir.A08G173900' => 'ghi', 'Gohir.A09G194900' => 'ghi', 'Gohir.A10G204100' => 'ghi', 'Gohir.A11G080600' => 'ghi', 'Gohir.A11G327500' => 'ghi', 'Gohir.A12G101800' => 'ghi', 'Gohir.D01G211200' => 'ghi', 'Gohir.D07G139200' => 'ghi', 'Gohir.D07G152100' => 'ghi', 'Gohir.D08G192600' => 'ghi', 'Gohir.D09G189200' => 'ghi', 'Gohir.D10G212000' => 'ghi', 'Gohir.D11G085200' => 'ghi', 'Gohir.D11G346400' => 'ghi', 'Gohir.D12G104800' => 'ghi', 'Gorai.001G151300' => 'gra', 'Gorai.001G174100' => 'gra', 'Gorai.002G257000' => 'gra', 'Gorai.004G202600' => 'gra', 'Gorai.007G090900' => 'gra', 'Gorai.007G376700' => 'gra', 'Gorai.008G114100' => 'gra', 'Gorai.011G237900' => 'gra', 'GSVIVG01005450001' => 'vvi', 'GSVIVG01016232001' => 'vvi', 'GSVIVG01026157001' => 'vvi', 'GSVIVG01027419001' => 'vvi', 'GSVIVG01027631001' => 'vvi', 'GSVIVG01034143001' => 'vvi', 'HanXRQChr03g0093921' => 'han', 'HanXRQChr04g0120001' => 'han', 'HanXRQChr04g0122561' => 'han', 'HanXRQChr09g0246851' => 'han', 'HanXRQChr10g0293311' => 'han', 'HanXRQChr13g0425231' => 'han', 'HanXRQChr16g0532571' => 'han', 'Haze_09050' => 'cav', 'Haze_15715' => 'cav', 'Haze_15716' => 'cav', 'Haze_16803' => 'cav', 'Haze_16850' => 'cav', 'Hma1.2p1_0301F.1_g118655' => 'hma', 'Hma1.2p1_0309F.1_g120590' => 'hma', 'Hma1.2p1_0936F.1_g238900' => 'hma', 'Hma1.2p1_3552F.1_g336740' => 'hma', 'HPP92_003520' => 'vpl', 'HPP92_006628' => 'vpl', 'HPP92_006645' => 'vpl', 'HPP92_014669' => 'vpl', 'HPP92_015077' => 'vpl', 'Hund16742' => 'sun', 'Hund17022' => 'sun', 'Lalb_Chr02g0152131' => 'lal', 'Lalb_Chr05g0225371' => 'lal', 'Lalb_Chr07g0189841' => 'lal', 'Lalb_Chr07g0192961' => 'lal', 'Lalb_Chr12g0208221' => 'lal', 'Lalb_Chr13g0291211' => 'lal', 'Lalb_Chr13g0291781' => 'lal', 'Lalb_Chr18g0044651' => 'lal', 'Lalb_Chr21g0313731' => 'lal', 'Lj1g0022533' => 'lja', 'Lj2A18T50' => 'lonja', 'Lj2A92G93' => 'lonja', 'Lj3A965T73' => 'lonja', 'Lj3g0000673' => 'lja', 'Lj3g0002666' => 'lja', 'Lj4g0016985' => 'lja', 'Lj5g0003625' => 'lja', 'Lj7A529G36' => 'lonja', 'Lj9A569T49' => 'lonja', 'Lj9A604T63' => 'lonja', 'Lsat_1_v5_gn_3_132060' => 'lsa', 'Lsat_1_v5_gn_4_68941' => 'lsa', 'Lsat_1_v5_gn_5_95580' => 'lsa', 'Lsat_1_v5_gn_7_161' => 'lsa', 'Lsat_1_v5_gn_7_7041' => 'lsa', 'Lsat_1_v5_gn_9_33481' => 'lsa', 'Lsat_1_v5_gn_9_68260' => 'lsa', 'Manes.01G073100' => 'mes', 'Manes.01G266300' => 'mes', 'Manes.02G033300' => 'mes', 'Manes.05G017900' => 'mes', 'Manes.05G046100' => 'mes', 'Manes.08G080900' => 'mes', 'Manes.10G049400' => 'mes', 'Mapoly0009s0186' => 'mpo', 'Mapoly0036s0118' => 'mpo', 'Mapoly0101s0046' => 'mpo', 'MBI04_g30218_MAGBIO' => 'mbi', 'MBI04_g35564_MAGBIO' => 'mbi', 'MBI12_g34011_MAGBIO' => 'mbi', 'MBI14_g04655_MAGBIO' => 'mbi', 'MCO07G653' => 'mco', 'MCO10G173' => 'mco', 'MD01G1087100' => 'mdo', 'MD01G1104200' => 'mdo', 'MD02G1205100' => 'mdo', 'MD04G1079200' => 'mdo', 'MD04G1131400' => 'mdo', 'MD07G1121600' => 'mdo', 'MD07G1157300' => 'mdo', 'MD07G1171000' => 'mdo', 'MD12G1144500' => 'mdo', 'Medtr1g094610' => 'mtr', 'Medtr4g021795' => 'mtr', 'Medtr4g023760' => 'mtr', 'Medtr7g118050' => 'mtr', 'MELO3C005582.2' => 'cme', 'MELO3C005989.2' => 'cme', 'MELO3C006192.2' => 'cme', 'MELO3C009248.2' => 'cme', 'MELO3C019817.2' => 'cme', 'Migut.B01625' => 'egut', 'Migut.B01915' => 'egut', 'Migut.F01721' => 'egut', 'Migut.J00314' => 'egut', 'MSTRG.20742' => 'ama', 'MSTRG.8134' => 'ama', 'Nitab4.5_0000096g0010' => 'nta', 'Nitab4.5_0000202g0030' => 'nta', 'Nitab4.5_0000216g0370' => 'nta', 'Nitab4.5_0000457g0230' => 'nta', 'Nitab4.5_0001702g0170' => 'nta', 'Nitab4.5_0003607g0010' => 'nta', 'Nitab4.5_0004917g0020' => 'nta', 'Nitab4.5_0007059g0010' => 'nta', 'Nitab4.5_0007184g0010' => 'nta', 'Nitab4.5_0007346g0020' => 'nta', 'Nn1g00410' => 'nnu', 'Nn1g01252' => 'nnu', 'Nn2g11168' => 'nnu', 'Nn2g13403' => 'nnu', 'Nn2g13760' => 'nnu', 'Nn4g26380' => 'nnu', 'Oeu000806.2' => 'oeu', 'Oeu005788.1' => 'oeu', 'Oeu006900.3' => 'oeu', 'Oeu007797.1' => 'oeu', 'Oeu011932.1' => 'oeu', 'Oeu022739.1' => 'oeu', 'Oeu037918.1' => 'oeu', 'Oeu055490.2' => 'oeu', 'Os01g0844400' => 'osa', 'Os02g0819100' => 'osa', 'Os03g0804300' => 'osa', 'Os05g0458000' => 'osa', 'Os07g0467800' => 'osa', 'Os12g0602200' => 'osa', 'Peaxi162Scf00013g03444' => 'pax', 'Peaxi162Scf00094g01120' => 'pax', 'Peaxi162Scf00191g01211' => 'pax', 'Peaxi162Scf00238g01110' => 'pax', 'Peaxi162Scf00330g00719' => 'pax', 'Peaxi162Scf00627g00018' => 'pax', 'PGR031G2686' => 'pgr', 'PGR042G0809' => 'pgr', 'PGR142G0193' => 'pgr', 'PGSC0003DMG400011066' => 'stu', 'PGSC0003DMG400012041' => 'stu', 'PGSC0003DMG400013678' => 'stu', 'PGSC0003DMG400023477' => 'stu', 'PGSC0003DMG400025956' => 'stu', 'PGSC0003DMG401019151' => 'stu', 'Phvul.006G116400' => 'pvu', 'Phvul.007G097300' => 'pvu', 'Phvul.010G015000' => 'pvu', 'Phvul.010G083900' => 'pvu', 'Potri.001G117100' => 'ptr', 'Potri.002G147300' => 'ptr', 'Potri.003G115600' => 'ptr', 'Potri.006G087400' => 'ptr', 'Potri.010G226100' => 'ptr', 'Potri.014G069200' => 'ptr', 'Potri.014G104000' => 'ptr', 'Potri.016G100200' => 'ptr', 'Pp3c10_20450' => 'ppa', 'Pp3c1_42400' => 'ppa', 'Pp3c3_24390' => 'ppa', 'Pp3c3_2860' => 'ppa', 'PRCOL_00003193' => 'pco', 'Prupe.2G144500' => 'ppe', 'Prupe.2G195700' => 'ppe', 'Prupe.2G209800' => 'ppe', 'Prupe.5G080000' => 'ppe', 'Prupe.6G257900' => 'ppe', 'Psat3g001160' => 'psa', 'Psat6g181880' => 'psa', 'Psat7g233720' => 'psa', 'PSO063G7587' => 'pso', 'PSO339G2145' => 'pso', 'PSO339G3369' => 'pso', 'PSO478G2747' => 'pso', 'PSO513G0140' => 'pso', 'PSO782G1614' => 'pso', 'PSO782G4889' => 'pso', 'PSO782G5485' => 'pso', 'PSO801G0241' => 'pso', 'QL07p048854' => 'qlo', 'QL08p046745' => 'qlo', 'QL08p052606' => 'qlo', 'QL08p053414' => 'qlo', 'QL08p054868' => 'qlo', 'RcHm_v2.0_Chr1g0350251' => 'rch', 'RcHm_v2.0_Chr1g0360851' => 'rch', 'RcHm_v2.0_Chr1g0362791' => 'rch', 'RcHm_v2.0_Chr3g0466281' => 'rch', 'RcHm_v2.0_Chr7g0201481' => 'rch', 'Rhsim01G0148600' => 'rsi', 'Rhsim05G0194400' => 'rsi', 'Rhsim07G0000700' => 'rsi', 'Rhsim07G0000800' => 'rsi', 'Rhsim07G0027900' => 'rsi', 'Rhsim09G0149500' => 'rsi', 'RhsimUnG0186900' => 'rsi', 'Sabra01G0089900' => 'sbr', 'Sabra02G0114700' => 'sbr', 'Sabra02G0116300' => 'sbr', 'Sabra03G0080100' => 'sbr', 'Sabra08G0024300' => 'sbr', 'Sabra10G0174300' => 'sbr', 'Sabra14G0048900' => 'sbr', 'Sabra14G0076500' => 'sbr', 'SalBow5G2513' => 'sbo', 'Sc01g0002300' => 'sci', 'Sc01g0004450' => 'sci', 'Sc06g0001680' => 'sci', 'Sc23g0003580' => 'sci', 'Sed0000913' => 'sed', 'Sed0001655' => 'sed', 'Sed0007745' => 'sed', 'Sed0010951' => 'sed', 'Sed0017599' => 'sed', 'Sed0021405' => 'sed', 'Sed0022810' => 'sed', 'SEGI_07099' => 'sgi', 'SEGI_11931' => 'sgi', 'SEGI_13187' => 'sgi', 'SEGI_29958' => 'sgi', 'SEGI_36351' => 'sgi', 'SGA_v2.0_scaffold126G33770' => 'sas', 'SGA_v2.0_scaffold153G37003' => 'sas', 'SGA_v2.0_scaffold2G01359' => 'sas', 'SGA_v2.0_scaffold5G03064' => 'sas', 'SGA_v2.0_scaffold95G28903' => 'sas', 'SHI12701' => 'shi', 'SHI26410' => 'shi', 'SHI38997' => 'shi', 'SHI53759' => 'shi', 'SHI53886' => 'shi', 'SHI54714' => 'shi', 'SMO011G0041' => 'smo', 'SMO146G0251' => 'smo', 'SMO160G0004' => 'smo', 'SMO174G0057' => 'smo', 'SMO244G0089' => 'smo', 'SMO296G0011' => 'smo', 'Solyc01g091280.3' => 'sly', 'Solyc05g047610.3' => 'sly', 'Solyc05g047640.3' => 'sly', 'Solyc05g055630.3' => 'sly', 'Solyc10g018160.2' => 'sly', 'Solyc10g084820.2' => 'sly', 'Solyc10g086565.2' => 'sly', 'Sopen01g037030' => 'spe', 'Sopen05g027920' => 'spe', 'Sopen05g034070' => 'spe', 'Sopen10g007260' => 'spe', 'Sopen10g034260' => 'spe', 'Sopen10g035950' => 'spe', 'Sp3g07710' => 'spa', 'Sp4g27420' => 'spa', 'Sp5g02450' => 'spa', 'Sp6g01280' => 'spa', 'Sp6g38480' => 'spa', 'Sp7g20780' => 'spa', 'TAR374G1413' => 'tar', 'TAR623G1777' => 'tar', 'TAR629G2370' => 'tar', 'TAR633G1759' => 'tar', 'TAR636G3387' => 'tar', 'THA.LOC104802447' => 'tha', 'THA.LOC104813916' => 'tha', 'THA.LOC104816423' => 'tha', 'THA.LOC104817246' => 'tha', 'THA.LOC104825895' => 'tha', 'Thecc.01G335200' => 'tca', 'Thecc.01G377400' => 'tca', 'Thecc.03G262200' => 'tca', 'Thecc.05G036800' => 'tca', 'Thecc.10G080500' => 'tca', 'Thecc.10G080800' => 'tca', 'Thhalv10001560m.g' => 'esa', 'Thhalv10006120m.g' => 'esa', 'Thhalv10014375m.g' => 'esa', 'Thhalv10021264m.g' => 'esa', 'Thhalv10028856m.g' => 'esa', 'TPR.G1914' => 'tpr', 'TPR.G4757' => 'tpr', 'TPR.G5595' => 'tpr', 'TWI14G0952' => 'twi', 'TWI14G1307' => 'twi', 'TWI38G2143' => 'twi', 'TWI59G0826' => 'twi', 'TWI77G0527' => 'twi', 'TWI81G0150' => 'twi', 'unitig_21.g21018' => 'ugi', 'unitig_26.g9725' => 'ugi', 'unitig_744.g24653' => 'ugi', 'unitig_749.g13778' => 'ugi', 'unitig_899.g15035' => 'ugi', 'vmacro04296' => 'vma', 'vmacro04852' => 'vma', 'vmacro13404' => 'vma', 'vmacro20169' => 'vma', 'vmacro21014' => 'vma', 'VMungo0331G0237' => 'vmu', 'VMungo0331G0706' => 'vmu', 'VMungo0331G1361' => 'vmu', 'VMungo0331G1489' => 'vmu', 'VMungo0540G1037' => 'vmu', 'VMungo0720G2487' => 'vmu', 'VMungo0720G2721' => 'vmu', 'Zm00001eb086860' => 'zma', 'Zm00001eb104760' => 'zma', 'Zm00001eb148220' => 'zma', 'Zm00001eb259030' => 'zma', 'Zm00001eb289590' => 'zma', 'Zm00001eb420150' => 'zma' ), 'gf_id' => 'HOM05D000968', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000968' ), 'data_identifier' => 'HOM05D000968', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000968', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p31690' => 'bna', 'A03p36040' => 'bna', 'A03p53730' => 'bna', 'A04p01410' => 'bna', 'A05p05420' => 'bna', 'A05p39630' => 'bna', 'A05p39640' => 'bna', 'A09p00970' => 'bna', 'A09p53060' => 'bna', 'A10p31890' => 'bna', 'Aa31LG10G15040' => 'aar', 'Aa31LG1G21090' => 'aar', 'Aa31LG1G26900' => 'aar', 'Aa31LG3G1820' => 'aar', 'Aa31LG5G1100' => 'aar', 'Aa31LG6G4740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2265' => 'aag', 'Actinidia07998' => 'ach', 'Actinidia11266' => 'ach', 'Actinidia12682' => 'ach', 'Actinidia26479' => 'ach', 'Actinidia31406' => 'ach', 'Actinidia32437' => 'ach', 'Actinidia38862' => 'ach', 'Ah.05g174230' => 'amhyb', 'Ah.05g179070' => 'amhyb', 'Ah.05g179090' => 'amhyb', 'Ah.12g059950' => 'amhyb', 'AL3G20480' => 'aly', 'AL4G44520' => 'aly', 'AL5G43110' => 'aly', 'AL6G13890' => 'aly', 'AL6G52620' => 'aly', 'AL7G30830' => 'aly', 'Aqoxy1G00899' => 'aox', 'Aqoxy5G04333' => 'aox', 'Aqoxy7G00641' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3IZ0NN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4EF6AW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W9P8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79GA3M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C43NQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFCU6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G95YVJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCHK29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LU1UG8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX91RN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGB4B1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8DA0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9H7JI' => 'arhy', 'AT3G09320' => 'ath', 'AT3G60800' => 'ath', 'AT4G00840' => 'ath', 'AT4G22750' => 'ath', 'AT5G04270' => 'ath', 'ATR0090G003' => 'atr', 'ATR0559G349' => 'atr', 'ATR0680G261' => 'atr', 'ATR0810G048' => 'atr', 'Atru.chr12.831' => 'acertr', 'Atru.chr5.303' => 'acertr', 'Atru.chr5.748' => 'acertr', 'Atru.chr8.1999' => 'acertr', 'Atru.chr9.1436' => 'acertr', 'AUR62004211' => 'cqu', 'AUR62004548' => 'cqu', 'AUR62013637' => 'cqu', 'AUR62022662' => 'cqu', 'AUR62025777' => 'cqu', 'AUR62042386' => 'cqu', 'BcaB01g02310' => 'bca', 'BcaB01g06062' => 'bca', 'BcaB02g08975' => 'bca', 'BcaB02g08980' => 'bca', 'BcaC01g04228' => 'bca', 'BcaC01g06830' => 'bca', 'BcaC02g10186' => 'bca', 'BcaC02g12214' => 'bca', 'BcaC04g24101' => 'bca', 'BcaC05g29520' => 'bca', 'BcaC05g29661' => 'bca', 'BcaC06g32130' => 'bca', 'BcaC06g32131' => 'bca', 'BcaC07g40601' => 'bca', 'BcaC07g42641' => 'bca', 'BcaNung01038' => 'bca', 'BcaNung01676' => 'bca', 'BcaNung02480' => 'bca', 'BcaNung07376' => 'bca', 'BolC3t16146H' => 'bol', 'BolC3t16637H' => 'bol', 'BolC4t22257H' => 'bol', 'BolC4t24728H' => 'bol', 'BolC5t34517H' => 'bol', 'BolC7t45703H' => 'bol', 'BolC8t51166H' => 'bol', 'BolC9t53038H' => 'bol', 'BolC9t60000H' => 'bol', 'BraA01t01345Z' => 'bra', 'BraA01t01346Z' => 'bra', 'BraA01t01348Z' => 'bra', 'BraA03t12347Z' => 'bra', 'BraA03t12775Z' => 'bra', 'BraA03t14439Z' => 'bra', 'BraA04t15860Z' => 'bra', 'BraA05t19511Z' => 'bra', 'BraA05t22746Z' => 'bra', 'BraA09t35767Z' => 'bra', 'BraA09t40732Z' => 'bra', 'BraA10t45233Z' => 'bra', 'C03p38720' => 'bna', 'C03p43680' => 'bna', 'C04p06350' => 'bna', 'C04p31800' => 'bna', 'C05p58680' => 'bna', 'C07p52110' => 'bna', 'C08p35760' => 'bna', 'C09p01050' => 'bna', 'C09p72600' => 'bna', 'CAN.G106.2' => 'can', 'CAN.G1482.1' => 'can', 'CAN.G324.12' => 'can', 'CAN.G388.20' => 'can', 'CAN.G412.7' => 'can', 'CAN.G694.32' => 'can', 'CAN.G92.12' => 'can', 'CANSAT11G2353' => 'cansat', 'CANSAT21G1398' => 'cansat', 'CANSAT56G2456' => 'cansat', 'CANSAT56G3031' => 'cansat', 'CANSAT56G4539' => 'cansat', 'CARHR083680' => 'chi', 'CARHR171190' => 'chi', 'CARHR209010' => 'chi', 'CARHR229680' => 'chi', 'CARHR249490' => 'chi', 'Carub.0003s0844' => 'cru', 'Carub.0005s2755' => 'cru', 'Carub.0006s0322' => 'cru', 'Carub.0006s3586' => 'cru', 'Carub.0007s1855' => 'cru', 'Ca_07808_v3' => 'car', 'Ca_09535_v3' => 'car', 'Ca_10548_v3' => 'car', 'Ca_19913_v3' => 'car', 'Ca_19916_v3' => 'car', 'Ca_19975_v3' => 'car', 'CBR_g22876' => 'cbr', 'CBR_g22879' => 'cbr', 'CBR_g38491' => 'cbr', 'CBR_g54185' => 'cbr', 'CBR_g54190' => 'cbr', 'Cc02_g11020' => 'ccan', 'Cc02_g23920' => 'ccan', 'Cc02_g39860' => 'ccan', 'Cc02_g39870' => 'ccan', 'Cc03_g06760' => 'ccan', 'Cc06_g02450' => 'ccan', 'Cc09_g09450' => 'ccan', 'CDE02G1959' => 'cde', 'CDE04G0600' => 'cde', 'CDE07G1996' => 'cde', 'CDE07G2078' => 'cde', 'CDE11G0611' => 'cde', 'Cfa001683' => 'cfa', 'Cfa001734' => 'cfa', 'Cfa001737' => 'cfa', 'Cfa003751' => 'cfa', 'Cfa012019' => 'cfa', 'Cfa017353' => 'cfa', 'Cfa017732' => 'cfa', 'Cfa022464' => 'cfa', 'Ciclev10012400m.g' => 'ccl', 'Ciclev10021242m.g' => 'ccl', 'Ciclev10021302m.g' => 'ccl', 'Ciclev10021463m.g' => 'ccl', 'Ciclev10032359m.g' => 'ccl', 'CiPaw.01G081000' => 'cil', 'CiPaw.01G262500' => 'cil', 'CiPaw.01G269800' => 'cil', 'CiPaw.02G168400' => 'cil', 'CiPaw.05G119500' => 'cil', 'CiPaw.11G147300' => 'cil', 'ClCG01G003630' => 'cla', 'ClCG05G000510' => 'cla', 'ClCG05G002300' => 'cla', 'ClCG08G007650' => 'cla', 'ClCG10G021250' => 'cla', 'COL.COLO4_06218' => 'col', 'COL.COLO4_12538' => 'col', 'COL.COLO4_14775' => 'col', 'COL.COLO4_23875' => 'col', 'Cpa.g.sc141.16' => 'cpa', 'Cpa.g.sc169.16' => 'cpa', 'Cpa.g.sc244.4' => 'cpa', 'Cpa.g.sc244.5' => 'cpa', 'Cpa.g.sc29.87' => 'cpa', 'Cpa.g.sc53.115' => 'cpa', 'Cre03.g207502' => 'cre', 'Cre06.g277000' => 'cre', 'Cre09.g394050' => 'cre', 'CsaV3_3G007680' => 'csa', 'CsaV3_3G009710' => 'csa', 'CsaV3_3G034790' => 'csa', 'CsaV3_5G003750' => 'csa', 'CsaV3_6G036620' => 'csa', 'CSS0002288' => 'camsi', 'CSS0011250' => 'camsi', 'CSS0021619' => 'camsi', 'CSS0046701' => 'camsi', 'DCAR_006420' => 'dca', 'DCAR_006865' => 'dca', 'DCAR_008558' => 'dca', 'DCAR_028754' => 'dca', 'DCAR_028755' => 'dca', 'Dinv31218' => 'din', 'Dinv32371' => 'din', 'Dinv34250' => 'din', 'Dinv37156' => 'din', 'Dinv43704' => 'din', 'Duzib093G1811' => 'dzi', 'Duzib106G1622' => 'dzi', 'Duzib114G0504' => 'dzi', 'Duzib128G0338' => 'dzi', 'Duzib128G1577' => 'dzi', 'Duzib133G0104' => 'dzi', 'Duzib133G1080' => 'dzi', 'Duzib138G0324' => 'dzi', 'Duzib138G0394' => 'dzi', 'Duzib205G0122' => 'dzi', 'Duzib268G1020' => 'dzi', 'Duzib268G1359' => 'dzi', 'ECA232G3929' => 'eca', 'ECA236G2210' => 'eca', 'ECA236G2287' => 'eca', 'ECA240G4568' => 'eca', 'ECA247G0894' => 'eca', 'EL10Ac1g00200' => 'bvu', 'EL10Ac1g00886' => 'bvu', 'EL10As1g23091' => 'bvu', 'EL10As1g23092' => 'bvu', 'Eucgr.A01284' => 'egr', 'Eucgr.A01285' => 'egr', 'Eucgr.D02456' => 'egr', 'Eucgr.E00018' => 'egr', 'Eucgr.E01439' => 'egr', 'Eucgr.G02859' => 'egr', 'FAN01G0168' => 'fan', 'FAN01G0453' => 'fan', 'FAN01G2761' => 'fan', 'FAN02G1239' => 'fan', 'FAN03G0645' => 'fan', 'FAN03G2707' => 'fan', 'FAN03G2978' => 'fan', 'FAN04G0227' => 'fan', 'FAN06G0091' => 'fan', 'FAN06G1418' => 'fan', 'FAN06G1512' => 'fan', 'FAN06G1986' => 'fan', 'FAN06G2905' => 'fan', 'FAN06G4325' => 'fan', 'FAN08G0033' => 'fan', 'FAN09G0642' => 'fan', 'FAN10G1763' => 'fan', 'FAN10G2026' => 'fan', 'FAN10G2513' => 'fan', 'FAN10G3402' => 'fan', 'FAN10G3564' => 'fan', 'FAN10G3987' => 'fan', 'FAN13G1490' => 'fan', 'FAN14G5857' => 'fan', 'FAN18G1188' => 'fan', 'FvH4_5g00750' => 'fve', 'FvH4_6g13410' => 'fve', 'FvH4_7g11740' => 'fve', 'FvH4_7g17410' => 'fve', 'FvH4_7g18860' => 'fve', 'Glyma.01G099100' => 'gma', 'Glyma.01G142300' => 'gma', 'Glyma.03G025500' => 'gma', 'Glyma.03G069700' => 'gma', 'Glyma.03G260000' => 'gma', 'Glyma.09G269800' => 'gma', 'Glyma.10G208700' => 'gma', 'Glyma.18G220400' => 'gma', 'Glyma.20G182000' => 'gma', 'Gohir.A01G221726' => 'ghi', 'Gohir.A07G134600' => 'ghi', 'Gohir.A07G146000' => 'ghi', 'Gohir.A08G173900' => 'ghi', 'Gohir.A09G194900' => 'ghi', 'Gohir.A10G204100' => 'ghi', 'Gohir.A11G080600' => 'ghi', 'Gohir.A11G327500' => 'ghi', 'Gohir.A12G101800' => 'ghi', 'Gohir.D01G211200' => 'ghi', 'Gohir.D07G139200' => 'ghi', 'Gohir.D07G152100' => 'ghi', 'Gohir.D08G192600' => 'ghi', 'Gohir.D09G189200' => 'ghi', 'Gohir.D10G212000' => 'ghi', 'Gohir.D11G085200' => 'ghi', 'Gohir.D11G346400' => 'ghi', 'Gohir.D12G104800' => 'ghi', 'Gorai.001G151300' => 'gra', 'Gorai.001G174100' => 'gra', 'Gorai.002G257000' => 'gra', 'Gorai.004G202600' => 'gra', 'Gorai.007G090900' => 'gra', 'Gorai.007G376700' => 'gra', 'Gorai.008G114100' => 'gra', 'Gorai.011G237900' => 'gra', 'GSVIVG01005450001' => 'vvi', 'GSVIVG01016232001' => 'vvi', 'GSVIVG01026157001' => 'vvi', 'GSVIVG01027419001' => 'vvi', 'GSVIVG01027631001' => 'vvi', 'GSVIVG01034143001' => 'vvi', 'HanXRQChr03g0093921' => 'han', 'HanXRQChr04g0120001' => 'han', 'HanXRQChr04g0122561' => 'han', 'HanXRQChr09g0246851' => 'han', 'HanXRQChr10g0293311' => 'han', 'HanXRQChr13g0425231' => 'han', 'HanXRQChr16g0532571' => 'han', 'Haze_09050' => 'cav', 'Haze_15715' => 'cav', 'Haze_15716' => 'cav', 'Haze_16803' => 'cav', 'Haze_16850' => 'cav', 'Hma1.2p1_0301F.1_g118655' => 'hma', 'Hma1.2p1_0309F.1_g120590' => 'hma', 'Hma1.2p1_0936F.1_g238900' => 'hma', 'Hma1.2p1_3552F.1_g336740' => 'hma', 'HPP92_003520' => 'vpl', 'HPP92_006628' => 'vpl', 'HPP92_006645' => 'vpl', 'HPP92_014669' => 'vpl', 'HPP92_015077' => 'vpl', 'Hund16742' => 'sun', 'Hund17022' => 'sun', 'Lalb_Chr02g0152131' => 'lal', 'Lalb_Chr05g0225371' => 'lal', 'Lalb_Chr07g0189841' => 'lal', 'Lalb_Chr07g0192961' => 'lal', 'Lalb_Chr12g0208221' => 'lal', 'Lalb_Chr13g0291211' => 'lal', 'Lalb_Chr13g0291781' => 'lal', 'Lalb_Chr18g0044651' => 'lal', 'Lalb_Chr21g0313731' => 'lal', 'Lj1g0022533' => 'lja', 'Lj2A18T50' => 'lonja', 'Lj2A92G93' => 'lonja', 'Lj3A965T73' => 'lonja', 'Lj3g0000673' => 'lja', 'Lj3g0002666' => 'lja', 'Lj4g0016985' => 'lja', 'Lj5g0003625' => 'lja', 'Lj7A529G36' => 'lonja', 'Lj9A569T49' => 'lonja', 'Lj9A604T63' => 'lonja', 'Lsat_1_v5_gn_3_132060' => 'lsa', 'Lsat_1_v5_gn_4_68941' => 'lsa', 'Lsat_1_v5_gn_5_95580' => 'lsa', 'Lsat_1_v5_gn_7_161' => 'lsa', 'Lsat_1_v5_gn_7_7041' => 'lsa', 'Lsat_1_v5_gn_9_33481' => 'lsa', 'Lsat_1_v5_gn_9_68260' => 'lsa', 'Manes.01G073100' => 'mes', 'Manes.01G266300' => 'mes', 'Manes.02G033300' => 'mes', 'Manes.05G017900' => 'mes', 'Manes.05G046100' => 'mes', 'Manes.08G080900' => 'mes', 'Manes.10G049400' => 'mes', 'Mapoly0009s0186' => 'mpo', 'Mapoly0036s0118' => 'mpo', 'Mapoly0101s0046' => 'mpo', 'MBI04_g30218_MAGBIO' => 'mbi', 'MBI04_g35564_MAGBIO' => 'mbi', 'MBI12_g34011_MAGBIO' => 'mbi', 'MBI14_g04655_MAGBIO' => 'mbi', 'MCO07G653' => 'mco', 'MCO10G173' => 'mco', 'MD01G1087100' => 'mdo', 'MD01G1104200' => 'mdo', 'MD02G1205100' => 'mdo', 'MD04G1079200' => 'mdo', 'MD04G1131400' => 'mdo', 'MD07G1121600' => 'mdo', 'MD07G1157300' => 'mdo', 'MD07G1171000' => 'mdo', 'MD12G1144500' => 'mdo', 'Medtr1g094610' => 'mtr', 'Medtr4g021795' => 'mtr', 'Medtr4g023760' => 'mtr', 'Medtr7g118050' => 'mtr', 'MELO3C005582.2' => 'cme', 'MELO3C005989.2' => 'cme', 'MELO3C006192.2' => 'cme', 'MELO3C009248.2' => 'cme', 'MELO3C019817.2' => 'cme', 'Migut.B01625' => 'egut', 'Migut.B01915' => 'egut', 'Migut.F01721' => 'egut', 'Migut.J00314' => 'egut', 'MSTRG.20742' => 'ama', 'MSTRG.8134' => 'ama', 'Nitab4.5_0000096g0010' => 'nta', 'Nitab4.5_0000202g0030' => 'nta', 'Nitab4.5_0000216g0370' => 'nta', 'Nitab4.5_0000457g0230' => 'nta', 'Nitab4.5_0001702g0170' => 'nta', 'Nitab4.5_0003607g0010' => 'nta', 'Nitab4.5_0004917g0020' => 'nta', 'Nitab4.5_0007059g0010' => 'nta', 'Nitab4.5_0007184g0010' => 'nta', 'Nitab4.5_0007346g0020' => 'nta', 'Nn1g00410' => 'nnu', 'Nn1g01252' => 'nnu', 'Nn2g11168' => 'nnu', 'Nn2g13403' => 'nnu', 'Nn2g13760' => 'nnu', 'Nn4g26380' => 'nnu', 'Oeu000806.2' => 'oeu', 'Oeu005788.1' => 'oeu', 'Oeu006900.3' => 'oeu', 'Oeu007797.1' => 'oeu', 'Oeu011932.1' => 'oeu', 'Oeu022739.1' => 'oeu', 'Oeu037918.1' => 'oeu', 'Oeu055490.2' => 'oeu', 'Os01g0844400' => 'osa', 'Os02g0819100' => 'osa', 'Os03g0804300' => 'osa', 'Os05g0458000' => 'osa', 'Os07g0467800' => 'osa', 'Os12g0602200' => 'osa', 'Peaxi162Scf00013g03444' => 'pax', 'Peaxi162Scf00094g01120' => 'pax', 'Peaxi162Scf00191g01211' => 'pax', 'Peaxi162Scf00238g01110' => 'pax', 'Peaxi162Scf00330g00719' => 'pax', 'Peaxi162Scf00627g00018' => 'pax', 'PGR031G2686' => 'pgr', 'PGR042G0809' => 'pgr', 'PGR142G0193' => 'pgr', 'PGSC0003DMG400011066' => 'stu', 'PGSC0003DMG400012041' => 'stu', 'PGSC0003DMG400013678' => 'stu', 'PGSC0003DMG400023477' => 'stu', 'PGSC0003DMG400025956' => 'stu', 'PGSC0003DMG401019151' => 'stu', 'Phvul.006G116400' => 'pvu', 'Phvul.007G097300' => 'pvu', 'Phvul.010G015000' => 'pvu', 'Phvul.010G083900' => 'pvu', 'Potri.001G117100' => 'ptr', 'Potri.002G147300' => 'ptr', 'Potri.003G115600' => 'ptr', 'Potri.006G087400' => 'ptr', 'Potri.010G226100' => 'ptr', 'Potri.014G069200' => 'ptr', 'Potri.014G104000' => 'ptr', 'Potri.016G100200' => 'ptr', 'Pp3c10_20450' => 'ppa', 'Pp3c1_42400' => 'ppa', 'Pp3c3_24390' => 'ppa', 'Pp3c3_2860' => 'ppa', 'PRCOL_00003193' => 'pco', 'Prupe.2G144500' => 'ppe', 'Prupe.2G195700' => 'ppe', 'Prupe.2G209800' => 'ppe', 'Prupe.5G080000' => 'ppe', 'Prupe.6G257900' => 'ppe', 'Psat3g001160' => 'psa', 'Psat6g181880' => 'psa', 'Psat7g233720' => 'psa', 'PSO063G7587' => 'pso', 'PSO339G2145' => 'pso', 'PSO339G3369' => 'pso', 'PSO478G2747' => 'pso', 'PSO513G0140' => 'pso', 'PSO782G1614' => 'pso', 'PSO782G4889' => 'pso', 'PSO782G5485' => 'pso', 'PSO801G0241' => 'pso', 'QL07p048854' => 'qlo', 'QL08p046745' => 'qlo', 'QL08p052606' => 'qlo', 'QL08p053414' => 'qlo', 'QL08p054868' => 'qlo', 'RcHm_v2.0_Chr1g0350251' => 'rch', 'RcHm_v2.0_Chr1g0360851' => 'rch', 'RcHm_v2.0_Chr1g0362791' => 'rch', 'RcHm_v2.0_Chr3g0466281' => 'rch', 'RcHm_v2.0_Chr7g0201481' => 'rch', 'Rhsim01G0148600' => 'rsi', 'Rhsim05G0194400' => 'rsi', 'Rhsim07G0000700' => 'rsi', 'Rhsim07G0000800' => 'rsi', 'Rhsim07G0027900' => 'rsi', 'Rhsim09G0149500' => 'rsi', 'RhsimUnG0186900' => 'rsi', 'Sabra01G0089900' => 'sbr', 'Sabra02G0114700' => 'sbr', 'Sabra02G0116300' => 'sbr', 'Sabra03G0080100' => 'sbr', 'Sabra08G0024300' => 'sbr', 'Sabra10G0174300' => 'sbr', 'Sabra14G0048900' => 'sbr', 'Sabra14G0076500' => 'sbr', 'SalBow5G2513' => 'sbo', 'Sc01g0002300' => 'sci', 'Sc01g0004450' => 'sci', 'Sc06g0001680' => 'sci', 'Sc23g0003580' => 'sci', 'Sed0000913' => 'sed', 'Sed0001655' => 'sed', 'Sed0007745' => 'sed', 'Sed0010951' => 'sed', 'Sed0017599' => 'sed', 'Sed0021405' => 'sed', 'Sed0022810' => 'sed', 'SEGI_07099' => 'sgi', 'SEGI_11931' => 'sgi', 'SEGI_13187' => 'sgi', 'SEGI_29958' => 'sgi', 'SEGI_36351' => 'sgi', 'SGA_v2.0_scaffold126G33770' => 'sas', 'SGA_v2.0_scaffold153G37003' => 'sas', 'SGA_v2.0_scaffold2G01359' => 'sas', 'SGA_v2.0_scaffold5G03064' => 'sas', 'SGA_v2.0_scaffold95G28903' => 'sas', 'SHI12701' => 'shi', 'SHI26410' => 'shi', 'SHI38997' => 'shi', 'SHI53759' => 'shi', 'SHI53886' => 'shi', 'SHI54714' => 'shi', 'SMO011G0041' => 'smo', 'SMO146G0251' => 'smo', 'SMO160G0004' => 'smo', 'SMO174G0057' => 'smo', 'SMO244G0089' => 'smo', 'SMO296G0011' => 'smo', 'Solyc01g091280.3' => 'sly', 'Solyc05g047610.3' => 'sly', 'Solyc05g047640.3' => 'sly', 'Solyc05g055630.3' => 'sly', 'Solyc10g018160.2' => 'sly', 'Solyc10g084820.2' => 'sly', 'Solyc10g086565.2' => 'sly', 'Sopen01g037030' => 'spe', 'Sopen05g027920' => 'spe', 'Sopen05g034070' => 'spe', 'Sopen10g007260' => 'spe', 'Sopen10g034260' => 'spe', 'Sopen10g035950' => 'spe', 'Sp3g07710' => 'spa', 'Sp4g27420' => 'spa', 'Sp5g02450' => 'spa', 'Sp6g01280' => 'spa', 'Sp6g38480' => 'spa', 'Sp7g20780' => 'spa', 'TAR374G1413' => 'tar', 'TAR623G1777' => 'tar', 'TAR629G2370' => 'tar', 'TAR633G1759' => 'tar', 'TAR636G3387' => 'tar', 'THA.LOC104802447' => 'tha', 'THA.LOC104813916' => 'tha', 'THA.LOC104816423' => 'tha', 'THA.LOC104817246' => 'tha', 'THA.LOC104825895' => 'tha', 'Thecc.01G335200' => 'tca', 'Thecc.01G377400' => 'tca', 'Thecc.03G262200' => 'tca', 'Thecc.05G036800' => 'tca', 'Thecc.10G080500' => 'tca', 'Thecc.10G080800' => 'tca', 'Thhalv10001560m.g' => 'esa', 'Thhalv10006120m.g' => 'esa', 'Thhalv10014375m.g' => 'esa', 'Thhalv10021264m.g' => 'esa', 'Thhalv10028856m.g' => 'esa', 'TPR.G1914' => 'tpr', 'TPR.G4757' => 'tpr', 'TPR.G5595' => 'tpr', 'TWI14G0952' => 'twi', 'TWI14G1307' => 'twi', 'TWI38G2143' => 'twi', 'TWI59G0826' => 'twi', 'TWI77G0527' => 'twi', 'TWI81G0150' => 'twi', 'unitig_21.g21018' => 'ugi', 'unitig_26.g9725' => 'ugi', 'unitig_744.g24653' => 'ugi', 'unitig_749.g13778' => 'ugi', 'unitig_899.g15035' => 'ugi', 'vmacro04296' => 'vma', 'vmacro04852' => 'vma', 'vmacro13404' => 'vma', 'vmacro20169' => 'vma', 'vmacro21014' => 'vma', 'VMungo0331G0237' => 'vmu', 'VMungo0331G0706' => 'vmu', 'VMungo0331G1361' => 'vmu', 'VMungo0331G1489' => 'vmu', 'VMungo0540G1037' => 'vmu', 'VMungo0720G2487' => 'vmu', 'VMungo0720G2721' => 'vmu', 'Zm00001eb086860' => 'zma', 'Zm00001eb104760' => 'zma', 'Zm00001eb148220' => 'zma', 'Zm00001eb259030' => 'zma', 'Zm00001eb289590' => 'zma', 'Zm00001eb420150' => 'zma' ) $gf_id = 'HOM05D000968' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000968' ) $data_identifier = 'HOM05D000968' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 19, 'bol' => (int) 9, 'bra' => (int) 12, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 5, 'ccan' => (int) 7, 'cde' => (int) 5, 'cfa' => (int) 8, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 4, 'dca' => (int) 5, 'din' => (int) 5, 'dzi' => (int) 12, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 25, 'fve' => (int) 5, 'gma' => (int) 9, 'ghi' => (int) 18, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 7, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 5, 'sun' => (int) 2, 'lal' => (int) 9, 'lja' => (int) 5, 'lonja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 9, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 2, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 3, 'stu' => (int) 6, 'pvu' => (int) 4, 'ptr' => (int) 8, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 3, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 1, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 5, 'sas' => (int) 5, 'shi' => (int) 6, 'smo' => (int) 6, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 3, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420150' $species_info = array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ) $local_species = 'cru' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000968', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p31690' => 'bna', 'A03p36040' => 'bna', 'A03p53730' => 'bna', 'A04p01410' => 'bna', 'A05p05420' => 'bna', 'A05p39630' => 'bna', 'A05p39640' => 'bna', 'A09p00970' => 'bna', 'A09p53060' => 'bna', 'A10p31890' => 'bna', 'Aa31LG10G15040' => 'aar', 'Aa31LG1G21090' => 'aar', 'Aa31LG1G26900' => 'aar', 'Aa31LG3G1820' => 'aar', 'Aa31LG5G1100' => 'aar', 'Aa31LG6G4740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2265' => 'aag', 'Actinidia07998' => 'ach', 'Actinidia11266' => 'ach', 'Actinidia12682' => 'ach', 'Actinidia26479' => 'ach', 'Actinidia31406' => 'ach', 'Actinidia32437' => 'ach', 'Actinidia38862' => 'ach', 'Ah.05g174230' => 'amhyb', 'Ah.05g179070' => 'amhyb', 'Ah.05g179090' => 'amhyb', 'Ah.12g059950' => 'amhyb', 'AL3G20480' => 'aly', 'AL4G44520' => 'aly', 'AL5G43110' => 'aly', 'AL6G13890' => 'aly', 'AL6G52620' => 'aly', 'AL7G30830' => 'aly', 'Aqoxy1G00899' => 'aox', 'Aqoxy5G04333' => 'aox', 'Aqoxy7G00641' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3IZ0NN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4EF6AW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W9P8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79GA3M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C43NQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFCU6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G95YVJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCHK29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LU1UG8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX91RN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGB4B1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8DA0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9H7JI' => 'arhy', 'AT3G09320' => 'ath', 'AT3G60800' => 'ath', 'AT4G00840' => 'ath', 'AT4G22750' => 'ath', 'AT5G04270' => 'ath', 'ATR0090G003' => 'atr', 'ATR0559G349' => 'atr', 'ATR0680G261' => 'atr', 'ATR0810G048' => 'atr', 'Atru.chr12.831' => 'acertr', 'Atru.chr5.303' => 'acertr', 'Atru.chr5.748' => 'acertr', 'Atru.chr8.1999' => 'acertr', 'Atru.chr9.1436' => 'acertr', 'AUR62004211' => 'cqu', 'AUR62004548' => 'cqu', 'AUR62013637' => 'cqu', 'AUR62022662' => 'cqu', 'AUR62025777' => 'cqu', 'AUR62042386' => 'cqu', 'BcaB01g02310' => 'bca', 'BcaB01g06062' => 'bca', 'BcaB02g08975' => 'bca', 'BcaB02g08980' => 'bca', 'BcaC01g04228' => 'bca', 'BcaC01g06830' => 'bca', 'BcaC02g10186' => 'bca', 'BcaC02g12214' => 'bca', 'BcaC04g24101' => 'bca', 'BcaC05g29520' => 'bca', 'BcaC05g29661' => 'bca', 'BcaC06g32130' => 'bca', 'BcaC06g32131' => 'bca', 'BcaC07g40601' => 'bca', 'BcaC07g42641' => 'bca', 'BcaNung01038' => 'bca', 'BcaNung01676' => 'bca', 'BcaNung02480' => 'bca', 'BcaNung07376' => 'bca', 'BolC3t16146H' => 'bol', 'BolC3t16637H' => 'bol', 'BolC4t22257H' => 'bol', 'BolC4t24728H' => 'bol', 'BolC5t34517H' => 'bol', 'BolC7t45703H' => 'bol', 'BolC8t51166H' => 'bol', 'BolC9t53038H' => 'bol', 'BolC9t60000H' => 'bol', 'BraA01t01345Z' => 'bra', 'BraA01t01346Z' => 'bra', 'BraA01t01348Z' => 'bra', 'BraA03t12347Z' => 'bra', 'BraA03t12775Z' => 'bra', 'BraA03t14439Z' => 'bra', 'BraA04t15860Z' => 'bra', 'BraA05t19511Z' => 'bra', 'BraA05t22746Z' => 'bra', 'BraA09t35767Z' => 'bra', 'BraA09t40732Z' => 'bra', 'BraA10t45233Z' => 'bra', 'C03p38720' => 'bna', 'C03p43680' => 'bna', 'C04p06350' => 'bna', 'C04p31800' => 'bna', 'C05p58680' => 'bna', 'C07p52110' => 'bna', 'C08p35760' => 'bna', 'C09p01050' => 'bna', 'C09p72600' => 'bna', 'CAN.G106.2' => 'can', 'CAN.G1482.1' => 'can', 'CAN.G324.12' => 'can', 'CAN.G388.20' => 'can', 'CAN.G412.7' => 'can', 'CAN.G694.32' => 'can', 'CAN.G92.12' => 'can', 'CANSAT11G2353' => 'cansat', 'CANSAT21G1398' => 'cansat', 'CANSAT56G2456' => 'cansat', 'CANSAT56G3031' => 'cansat', 'CANSAT56G4539' => 'cansat', 'CARHR083680' => 'chi', 'CARHR171190' => 'chi', 'CARHR209010' => 'chi', 'CARHR229680' => 'chi', 'CARHR249490' => 'chi', 'Carub.0003s0844' => 'cru', 'Carub.0005s2755' => 'cru', 'Carub.0006s0322' => 'cru', 'Carub.0006s3586' => 'cru', 'Carub.0007s1855' => 'cru', 'Ca_07808_v3' => 'car', 'Ca_09535_v3' => 'car', 'Ca_10548_v3' => 'car', 'Ca_19913_v3' => 'car', 'Ca_19916_v3' => 'car', 'Ca_19975_v3' => 'car', 'CBR_g22876' => 'cbr', 'CBR_g22879' => 'cbr', 'CBR_g38491' => 'cbr', 'CBR_g54185' => 'cbr', 'CBR_g54190' => 'cbr', 'Cc02_g11020' => 'ccan', 'Cc02_g23920' => 'ccan', 'Cc02_g39860' => 'ccan', 'Cc02_g39870' => 'ccan', 'Cc03_g06760' => 'ccan', 'Cc06_g02450' => 'ccan', 'Cc09_g09450' => 'ccan', 'CDE02G1959' => 'cde', 'CDE04G0600' => 'cde', 'CDE07G1996' => 'cde', 'CDE07G2078' => 'cde', 'CDE11G0611' => 'cde', 'Cfa001683' => 'cfa', 'Cfa001734' => 'cfa', 'Cfa001737' => 'cfa', 'Cfa003751' => 'cfa', 'Cfa012019' => 'cfa', 'Cfa017353' => 'cfa', 'Cfa017732' => 'cfa', 'Cfa022464' => 'cfa', 'Ciclev10012400m.g' => 'ccl', 'Ciclev10021242m.g' => 'ccl', 'Ciclev10021302m.g' => 'ccl', 'Ciclev10021463m.g' => 'ccl', 'Ciclev10032359m.g' => 'ccl', 'CiPaw.01G081000' => 'cil', 'CiPaw.01G262500' => 'cil', 'CiPaw.01G269800' => 'cil', 'CiPaw.02G168400' => 'cil', 'CiPaw.05G119500' => 'cil', 'CiPaw.11G147300' => 'cil', 'ClCG01G003630' => 'cla', 'ClCG05G000510' => 'cla', 'ClCG05G002300' => 'cla', 'ClCG08G007650' => 'cla', 'ClCG10G021250' => 'cla', 'COL.COLO4_06218' => 'col', 'COL.COLO4_12538' => 'col', 'COL.COLO4_14775' => 'col', 'COL.COLO4_23875' => 'col', 'Cpa.g.sc141.16' => 'cpa', 'Cpa.g.sc169.16' => 'cpa', 'Cpa.g.sc244.4' => 'cpa', 'Cpa.g.sc244.5' => 'cpa', 'Cpa.g.sc29.87' => 'cpa', 'Cpa.g.sc53.115' => 'cpa', 'Cre03.g207502' => 'cre', 'Cre06.g277000' => 'cre', 'Cre09.g394050' => 'cre', 'CsaV3_3G007680' => 'csa', 'CsaV3_3G009710' => 'csa', 'CsaV3_3G034790' => 'csa', 'CsaV3_5G003750' => 'csa', 'CsaV3_6G036620' => 'csa', 'CSS0002288' => 'camsi', 'CSS0011250' => 'camsi', 'CSS0021619' => 'camsi', 'CSS0046701' => 'camsi', 'DCAR_006420' => 'dca', 'DCAR_006865' => 'dca', 'DCAR_008558' => 'dca', 'DCAR_028754' => 'dca', 'DCAR_028755' => 'dca', 'Dinv31218' => 'din', 'Dinv32371' => 'din', 'Dinv34250' => 'din', 'Dinv37156' => 'din', 'Dinv43704' => 'din', 'Duzib093G1811' => 'dzi', 'Duzib106G1622' => 'dzi', 'Duzib114G0504' => 'dzi', 'Duzib128G0338' => 'dzi', 'Duzib128G1577' => 'dzi', 'Duzib133G0104' => 'dzi', 'Duzib133G1080' => 'dzi', 'Duzib138G0324' => 'dzi', 'Duzib138G0394' => 'dzi', 'Duzib205G0122' => 'dzi', 'Duzib268G1020' => 'dzi', 'Duzib268G1359' => 'dzi', 'ECA232G3929' => 'eca', 'ECA236G2210' => 'eca', 'ECA236G2287' => 'eca', 'ECA240G4568' => 'eca', 'ECA247G0894' => 'eca', 'EL10Ac1g00200' => 'bvu', 'EL10Ac1g00886' => 'bvu', 'EL10As1g23091' => 'bvu', 'EL10As1g23092' => 'bvu', 'Eucgr.A01284' => 'egr', 'Eucgr.A01285' => 'egr', 'Eucgr.D02456' => 'egr', 'Eucgr.E00018' => 'egr', 'Eucgr.E01439' => 'egr', 'Eucgr.G02859' => 'egr', 'FAN01G0168' => 'fan', 'FAN01G0453' => 'fan', 'FAN01G2761' => 'fan', 'FAN02G1239' => 'fan', 'FAN03G0645' => 'fan', 'FAN03G2707' => 'fan', 'FAN03G2978' => 'fan', 'FAN04G0227' => 'fan', 'FAN06G0091' => 'fan', 'FAN06G1418' => 'fan', 'FAN06G1512' => 'fan', 'FAN06G1986' => 'fan', 'FAN06G2905' => 'fan', 'FAN06G4325' => 'fan', 'FAN08G0033' => 'fan', 'FAN09G0642' => 'fan', 'FAN10G1763' => 'fan', 'FAN10G2026' => 'fan', 'FAN10G2513' => 'fan', 'FAN10G3402' => 'fan', 'FAN10G3564' => 'fan', 'FAN10G3987' => 'fan', 'FAN13G1490' => 'fan', 'FAN14G5857' => 'fan', 'FAN18G1188' => 'fan', 'FvH4_5g00750' => 'fve', 'FvH4_6g13410' => 'fve', 'FvH4_7g11740' => 'fve', 'FvH4_7g17410' => 'fve', 'FvH4_7g18860' => 'fve', 'Glyma.01G099100' => 'gma', 'Glyma.01G142300' => 'gma', 'Glyma.03G025500' => 'gma', 'Glyma.03G069700' => 'gma', 'Glyma.03G260000' => 'gma', 'Glyma.09G269800' => 'gma', 'Glyma.10G208700' => 'gma', 'Glyma.18G220400' => 'gma', 'Glyma.20G182000' => 'gma', 'Gohir.A01G221726' => 'ghi', 'Gohir.A07G134600' => 'ghi', 'Gohir.A07G146000' => 'ghi', 'Gohir.A08G173900' => 'ghi', 'Gohir.A09G194900' => 'ghi', 'Gohir.A10G204100' => 'ghi', 'Gohir.A11G080600' => 'ghi', 'Gohir.A11G327500' => 'ghi', 'Gohir.A12G101800' => 'ghi', 'Gohir.D01G211200' => 'ghi', 'Gohir.D07G139200' => 'ghi', 'Gohir.D07G152100' => 'ghi', 'Gohir.D08G192600' => 'ghi', 'Gohir.D09G189200' => 'ghi', 'Gohir.D10G212000' => 'ghi', 'Gohir.D11G085200' => 'ghi', 'Gohir.D11G346400' => 'ghi', 'Gohir.D12G104800' => 'ghi', 'Gorai.001G151300' => 'gra', 'Gorai.001G174100' => 'gra', 'Gorai.002G257000' => 'gra', 'Gorai.004G202600' => 'gra', 'Gorai.007G090900' => 'gra', 'Gorai.007G376700' => 'gra', 'Gorai.008G114100' => 'gra', 'Gorai.011G237900' => 'gra', 'GSVIVG01005450001' => 'vvi', 'GSVIVG01016232001' => 'vvi', 'GSVIVG01026157001' => 'vvi', 'GSVIVG01027419001' => 'vvi', 'GSVIVG01027631001' => 'vvi', 'GSVIVG01034143001' => 'vvi', 'HanXRQChr03g0093921' => 'han', 'HanXRQChr04g0120001' => 'han', 'HanXRQChr04g0122561' => 'han', 'HanXRQChr09g0246851' => 'han', 'HanXRQChr10g0293311' => 'han', 'HanXRQChr13g0425231' => 'han', 'HanXRQChr16g0532571' => 'han', 'Haze_09050' => 'cav', 'Haze_15715' => 'cav', 'Haze_15716' => 'cav', 'Haze_16803' => 'cav', 'Haze_16850' => 'cav', 'Hma1.2p1_0301F.1_g118655' => 'hma', 'Hma1.2p1_0309F.1_g120590' => 'hma', 'Hma1.2p1_0936F.1_g238900' => 'hma', 'Hma1.2p1_3552F.1_g336740' => 'hma', 'HPP92_003520' => 'vpl', 'HPP92_006628' => 'vpl', 'HPP92_006645' => 'vpl', 'HPP92_014669' => 'vpl', 'HPP92_015077' => 'vpl', 'Hund16742' => 'sun', 'Hund17022' => 'sun', 'Lalb_Chr02g0152131' => 'lal', 'Lalb_Chr05g0225371' => 'lal', 'Lalb_Chr07g0189841' => 'lal', 'Lalb_Chr07g0192961' => 'lal', 'Lalb_Chr12g0208221' => 'lal', 'Lalb_Chr13g0291211' => 'lal', 'Lalb_Chr13g0291781' => 'lal', 'Lalb_Chr18g0044651' => 'lal', 'Lalb_Chr21g0313731' => 'lal', 'Lj1g0022533' => 'lja', 'Lj2A18T50' => 'lonja', 'Lj2A92G93' => 'lonja', 'Lj3A965T73' => 'lonja', 'Lj3g0000673' => 'lja', 'Lj3g0002666' => 'lja', 'Lj4g0016985' => 'lja', 'Lj5g0003625' => 'lja', 'Lj7A529G36' => 'lonja', 'Lj9A569T49' => 'lonja', 'Lj9A604T63' => 'lonja', 'Lsat_1_v5_gn_3_132060' => 'lsa', 'Lsat_1_v5_gn_4_68941' => 'lsa', 'Lsat_1_v5_gn_5_95580' => 'lsa', 'Lsat_1_v5_gn_7_161' => 'lsa', 'Lsat_1_v5_gn_7_7041' => 'lsa', 'Lsat_1_v5_gn_9_33481' => 'lsa', 'Lsat_1_v5_gn_9_68260' => 'lsa', 'Manes.01G073100' => 'mes', 'Manes.01G266300' => 'mes', 'Manes.02G033300' => 'mes', 'Manes.05G017900' => 'mes', 'Manes.05G046100' => 'mes', 'Manes.08G080900' => 'mes', 'Manes.10G049400' => 'mes', 'Mapoly0009s0186' => 'mpo', 'Mapoly0036s0118' => 'mpo', 'Mapoly0101s0046' => 'mpo', 'MBI04_g30218_MAGBIO' => 'mbi', 'MBI04_g35564_MAGBIO' => 'mbi', 'MBI12_g34011_MAGBIO' => 'mbi', 'MBI14_g04655_MAGBIO' => 'mbi', 'MCO07G653' => 'mco', 'MCO10G173' => 'mco', 'MD01G1087100' => 'mdo', 'MD01G1104200' => 'mdo', 'MD02G1205100' => 'mdo', 'MD04G1079200' => 'mdo', 'MD04G1131400' => 'mdo', 'MD07G1121600' => 'mdo', 'MD07G1157300' => 'mdo', 'MD07G1171000' => 'mdo', 'MD12G1144500' => 'mdo', 'Medtr1g094610' => 'mtr', 'Medtr4g021795' => 'mtr', 'Medtr4g023760' => 'mtr', 'Medtr7g118050' => 'mtr', 'MELO3C005582.2' => 'cme', 'MELO3C005989.2' => 'cme', 'MELO3C006192.2' => 'cme', 'MELO3C009248.2' => 'cme', 'MELO3C019817.2' => 'cme', 'Migut.B01625' => 'egut', 'Migut.B01915' => 'egut', 'Migut.F01721' => 'egut', 'Migut.J00314' => 'egut', 'MSTRG.20742' => 'ama', 'MSTRG.8134' => 'ama', 'Nitab4.5_0000096g0010' => 'nta', 'Nitab4.5_0000202g0030' => 'nta', 'Nitab4.5_0000216g0370' => 'nta', 'Nitab4.5_0000457g0230' => 'nta', 'Nitab4.5_0001702g0170' => 'nta', 'Nitab4.5_0003607g0010' => 'nta', 'Nitab4.5_0004917g0020' => 'nta', 'Nitab4.5_0007059g0010' => 'nta', 'Nitab4.5_0007184g0010' => 'nta', 'Nitab4.5_0007346g0020' => 'nta', 'Nn1g00410' => 'nnu', 'Nn1g01252' => 'nnu', 'Nn2g11168' => 'nnu', 'Nn2g13403' => 'nnu', 'Nn2g13760' => 'nnu', 'Nn4g26380' => 'nnu', 'Oeu000806.2' => 'oeu', 'Oeu005788.1' => 'oeu', 'Oeu006900.3' => 'oeu', 'Oeu007797.1' => 'oeu', 'Oeu011932.1' => 'oeu', 'Oeu022739.1' => 'oeu', 'Oeu037918.1' => 'oeu', 'Oeu055490.2' => 'oeu', 'Os01g0844400' => 'osa', 'Os02g0819100' => 'osa', 'Os03g0804300' => 'osa', 'Os05g0458000' => 'osa', 'Os07g0467800' => 'osa', 'Os12g0602200' => 'osa', 'Peaxi162Scf00013g03444' => 'pax', 'Peaxi162Scf00094g01120' => 'pax', 'Peaxi162Scf00191g01211' => 'pax', 'Peaxi162Scf00238g01110' => 'pax', 'Peaxi162Scf00330g00719' => 'pax', 'Peaxi162Scf00627g00018' => 'pax', 'PGR031G2686' => 'pgr', 'PGR042G0809' => 'pgr', 'PGR142G0193' => 'pgr', 'PGSC0003DMG400011066' => 'stu', 'PGSC0003DMG400012041' => 'stu', 'PGSC0003DMG400013678' => 'stu', 'PGSC0003DMG400023477' => 'stu', 'PGSC0003DMG400025956' => 'stu', 'PGSC0003DMG401019151' => 'stu', 'Phvul.006G116400' => 'pvu', 'Phvul.007G097300' => 'pvu', 'Phvul.010G015000' => 'pvu', 'Phvul.010G083900' => 'pvu', 'Potri.001G117100' => 'ptr', 'Potri.002G147300' => 'ptr', 'Potri.003G115600' => 'ptr', 'Potri.006G087400' => 'ptr', 'Potri.010G226100' => 'ptr', 'Potri.014G069200' => 'ptr', 'Potri.014G104000' => 'ptr', 'Potri.016G100200' => 'ptr', 'Pp3c10_20450' => 'ppa', 'Pp3c1_42400' => 'ppa', 'Pp3c3_24390' => 'ppa', 'Pp3c3_2860' => 'ppa', 'PRCOL_00003193' => 'pco', 'Prupe.2G144500' => 'ppe', 'Prupe.2G195700' => 'ppe', 'Prupe.2G209800' => 'ppe', 'Prupe.5G080000' => 'ppe', 'Prupe.6G257900' => 'ppe', 'Psat3g001160' => 'psa', 'Psat6g181880' => 'psa', 'Psat7g233720' => 'psa', 'PSO063G7587' => 'pso', 'PSO339G2145' => 'pso', 'PSO339G3369' => 'pso', 'PSO478G2747' => 'pso', 'PSO513G0140' => 'pso', 'PSO782G1614' => 'pso', 'PSO782G4889' => 'pso', 'PSO782G5485' => 'pso', 'PSO801G0241' => 'pso', 'QL07p048854' => 'qlo', 'QL08p046745' => 'qlo', 'QL08p052606' => 'qlo', 'QL08p053414' => 'qlo', 'QL08p054868' => 'qlo', 'RcHm_v2.0_Chr1g0350251' => 'rch', 'RcHm_v2.0_Chr1g0360851' => 'rch', 'RcHm_v2.0_Chr1g0362791' => 'rch', 'RcHm_v2.0_Chr3g0466281' => 'rch', 'RcHm_v2.0_Chr7g0201481' => 'rch', 'Rhsim01G0148600' => 'rsi', 'Rhsim05G0194400' => 'rsi', 'Rhsim07G0000700' => 'rsi', 'Rhsim07G0000800' => 'rsi', 'Rhsim07G0027900' => 'rsi', 'Rhsim09G0149500' => 'rsi', 'RhsimUnG0186900' => 'rsi', 'Sabra01G0089900' => 'sbr', 'Sabra02G0114700' => 'sbr', 'Sabra02G0116300' => 'sbr', 'Sabra03G0080100' => 'sbr', 'Sabra08G0024300' => 'sbr', 'Sabra10G0174300' => 'sbr', 'Sabra14G0048900' => 'sbr', 'Sabra14G0076500' => 'sbr', 'SalBow5G2513' => 'sbo', 'Sc01g0002300' => 'sci', 'Sc01g0004450' => 'sci', 'Sc06g0001680' => 'sci', 'Sc23g0003580' => 'sci', 'Sed0000913' => 'sed', 'Sed0001655' => 'sed', 'Sed0007745' => 'sed', 'Sed0010951' => 'sed', 'Sed0017599' => 'sed', 'Sed0021405' => 'sed', 'Sed0022810' => 'sed', 'SEGI_07099' => 'sgi', 'SEGI_11931' => 'sgi', 'SEGI_13187' => 'sgi', 'SEGI_29958' => 'sgi', 'SEGI_36351' => 'sgi', 'SGA_v2.0_scaffold126G33770' => 'sas', 'SGA_v2.0_scaffold153G37003' => 'sas', 'SGA_v2.0_scaffold2G01359' => 'sas', 'SGA_v2.0_scaffold5G03064' => 'sas', 'SGA_v2.0_scaffold95G28903' => 'sas', 'SHI12701' => 'shi', 'SHI26410' => 'shi', 'SHI38997' => 'shi', 'SHI53759' => 'shi', 'SHI53886' => 'shi', 'SHI54714' => 'shi', 'SMO011G0041' => 'smo', 'SMO146G0251' => 'smo', 'SMO160G0004' => 'smo', 'SMO174G0057' => 'smo', 'SMO244G0089' => 'smo', 'SMO296G0011' => 'smo', 'Solyc01g091280.3' => 'sly', 'Solyc05g047610.3' => 'sly', 'Solyc05g047640.3' => 'sly', 'Solyc05g055630.3' => 'sly', 'Solyc10g018160.2' => 'sly', 'Solyc10g084820.2' => 'sly', 'Solyc10g086565.2' => 'sly', 'Sopen01g037030' => 'spe', 'Sopen05g027920' => 'spe', 'Sopen05g034070' => 'spe', 'Sopen10g007260' => 'spe', 'Sopen10g034260' => 'spe', 'Sopen10g035950' => 'spe', 'Sp3g07710' => 'spa', 'Sp4g27420' => 'spa', 'Sp5g02450' => 'spa', 'Sp6g01280' => 'spa', 'Sp6g38480' => 'spa', 'Sp7g20780' => 'spa', 'TAR374G1413' => 'tar', 'TAR623G1777' => 'tar', 'TAR629G2370' => 'tar', 'TAR633G1759' => 'tar', 'TAR636G3387' => 'tar', 'THA.LOC104802447' => 'tha', 'THA.LOC104813916' => 'tha', 'THA.LOC104816423' => 'tha', 'THA.LOC104817246' => 'tha', 'THA.LOC104825895' => 'tha', 'Thecc.01G335200' => 'tca', 'Thecc.01G377400' => 'tca', 'Thecc.03G262200' => 'tca', 'Thecc.05G036800' => 'tca', 'Thecc.10G080500' => 'tca', 'Thecc.10G080800' => 'tca', 'Thhalv10001560m.g' => 'esa', 'Thhalv10006120m.g' => 'esa', 'Thhalv10014375m.g' => 'esa', 'Thhalv10021264m.g' => 'esa', 'Thhalv10028856m.g' => 'esa', 'TPR.G1914' => 'tpr', 'TPR.G4757' => 'tpr', 'TPR.G5595' => 'tpr', 'TWI14G0952' => 'twi', 'TWI14G1307' => 'twi', 'TWI38G2143' => 'twi', 'TWI59G0826' => 'twi', 'TWI77G0527' => 'twi', 'TWI81G0150' => 'twi', 'unitig_21.g21018' => 'ugi', 'unitig_26.g9725' => 'ugi', 'unitig_744.g24653' => 'ugi', 'unitig_749.g13778' => 'ugi', 'unitig_899.g15035' => 'ugi', 'vmacro04296' => 'vma', 'vmacro04852' => 'vma', 'vmacro13404' => 'vma', 'vmacro20169' => 'vma', 'vmacro21014' => 'vma', 'VMungo0331G0237' => 'vmu', 'VMungo0331G0706' => 'vmu', 'VMungo0331G1361' => 'vmu', 'VMungo0331G1489' => 'vmu', 'VMungo0540G1037' => 'vmu', 'VMungo0720G2487' => 'vmu', 'VMungo0720G2721' => 'vmu', 'Zm00001eb086860' => 'zma', 'Zm00001eb104760' => 'zma', 'Zm00001eb148220' => 'zma', 'Zm00001eb259030' => 'zma', 'Zm00001eb289590' => 'zma', 'Zm00001eb420150' => 'zma' ), 'gf_id' => 'HOM05D000968', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000968' ), 'data_identifier' => 'HOM05D000968', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000968', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p31690' => 'bna', 'A03p36040' => 'bna', 'A03p53730' => 'bna', 'A04p01410' => 'bna', 'A05p05420' => 'bna', 'A05p39630' => 'bna', 'A05p39640' => 'bna', 'A09p00970' => 'bna', 'A09p53060' => 'bna', 'A10p31890' => 'bna', 'Aa31LG10G15040' => 'aar', 'Aa31LG1G21090' => 'aar', 'Aa31LG1G26900' => 'aar', 'Aa31LG3G1820' => 'aar', 'Aa31LG5G1100' => 'aar', 'Aa31LG6G4740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2265' => 'aag', 'Actinidia07998' => 'ach', 'Actinidia11266' => 'ach', 'Actinidia12682' => 'ach', 'Actinidia26479' => 'ach', 'Actinidia31406' => 'ach', 'Actinidia32437' => 'ach', 'Actinidia38862' => 'ach', 'Ah.05g174230' => 'amhyb', 'Ah.05g179070' => 'amhyb', 'Ah.05g179090' => 'amhyb', 'Ah.12g059950' => 'amhyb', 'AL3G20480' => 'aly', 'AL4G44520' => 'aly', 'AL5G43110' => 'aly', 'AL6G13890' => 'aly', 'AL6G52620' => 'aly', 'AL7G30830' => 'aly', 'Aqoxy1G00899' => 'aox', 'Aqoxy5G04333' => 'aox', 'Aqoxy7G00641' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3IZ0NN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4EF6AW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W9P8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79GA3M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C43NQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFCU6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G95YVJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCHK29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LU1UG8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX91RN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGB4B1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8DA0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9H7JI' => 'arhy', 'AT3G09320' => 'ath', 'AT3G60800' => 'ath', 'AT4G00840' => 'ath', 'AT4G22750' => 'ath', 'AT5G04270' => 'ath', 'ATR0090G003' => 'atr', 'ATR0559G349' => 'atr', 'ATR0680G261' => 'atr', 'ATR0810G048' => 'atr', 'Atru.chr12.831' => 'acertr', 'Atru.chr5.303' => 'acertr', 'Atru.chr5.748' => 'acertr', 'Atru.chr8.1999' => 'acertr', 'Atru.chr9.1436' => 'acertr', 'AUR62004211' => 'cqu', 'AUR62004548' => 'cqu', 'AUR62013637' => 'cqu', 'AUR62022662' => 'cqu', 'AUR62025777' => 'cqu', 'AUR62042386' => 'cqu', 'BcaB01g02310' => 'bca', 'BcaB01g06062' => 'bca', 'BcaB02g08975' => 'bca', 'BcaB02g08980' => 'bca', 'BcaC01g04228' => 'bca', 'BcaC01g06830' => 'bca', 'BcaC02g10186' => 'bca', 'BcaC02g12214' => 'bca', 'BcaC04g24101' => 'bca', 'BcaC05g29520' => 'bca', 'BcaC05g29661' => 'bca', 'BcaC06g32130' => 'bca', 'BcaC06g32131' => 'bca', 'BcaC07g40601' => 'bca', 'BcaC07g42641' => 'bca', 'BcaNung01038' => 'bca', 'BcaNung01676' => 'bca', 'BcaNung02480' => 'bca', 'BcaNung07376' => 'bca', 'BolC3t16146H' => 'bol', 'BolC3t16637H' => 'bol', 'BolC4t22257H' => 'bol', 'BolC4t24728H' => 'bol', 'BolC5t34517H' => 'bol', 'BolC7t45703H' => 'bol', 'BolC8t51166H' => 'bol', 'BolC9t53038H' => 'bol', 'BolC9t60000H' => 'bol', 'BraA01t01345Z' => 'bra', 'BraA01t01346Z' => 'bra', 'BraA01t01348Z' => 'bra', 'BraA03t12347Z' => 'bra', 'BraA03t12775Z' => 'bra', 'BraA03t14439Z' => 'bra', 'BraA04t15860Z' => 'bra', 'BraA05t19511Z' => 'bra', 'BraA05t22746Z' => 'bra', 'BraA09t35767Z' => 'bra', 'BraA09t40732Z' => 'bra', 'BraA10t45233Z' => 'bra', 'C03p38720' => 'bna', 'C03p43680' => 'bna', 'C04p06350' => 'bna', 'C04p31800' => 'bna', 'C05p58680' => 'bna', 'C07p52110' => 'bna', 'C08p35760' => 'bna', 'C09p01050' => 'bna', 'C09p72600' => 'bna', 'CAN.G106.2' => 'can', 'CAN.G1482.1' => 'can', 'CAN.G324.12' => 'can', 'CAN.G388.20' => 'can', 'CAN.G412.7' => 'can', 'CAN.G694.32' => 'can', 'CAN.G92.12' => 'can', 'CANSAT11G2353' => 'cansat', 'CANSAT21G1398' => 'cansat', 'CANSAT56G2456' => 'cansat', 'CANSAT56G3031' => 'cansat', 'CANSAT56G4539' => 'cansat', 'CARHR083680' => 'chi', 'CARHR171190' => 'chi', 'CARHR209010' => 'chi', 'CARHR229680' => 'chi', 'CARHR249490' => 'chi', 'Carub.0003s0844' => 'cru', 'Carub.0005s2755' => 'cru', 'Carub.0006s0322' => 'cru', 'Carub.0006s3586' => 'cru', 'Carub.0007s1855' => 'cru', 'Ca_07808_v3' => 'car', 'Ca_09535_v3' => 'car', 'Ca_10548_v3' => 'car', 'Ca_19913_v3' => 'car', 'Ca_19916_v3' => 'car', 'Ca_19975_v3' => 'car', 'CBR_g22876' => 'cbr', 'CBR_g22879' => 'cbr', 'CBR_g38491' => 'cbr', 'CBR_g54185' => 'cbr', 'CBR_g54190' => 'cbr', 'Cc02_g11020' => 'ccan', 'Cc02_g23920' => 'ccan', 'Cc02_g39860' => 'ccan', 'Cc02_g39870' => 'ccan', 'Cc03_g06760' => 'ccan', 'Cc06_g02450' => 'ccan', 'Cc09_g09450' => 'ccan', 'CDE02G1959' => 'cde', 'CDE04G0600' => 'cde', 'CDE07G1996' => 'cde', 'CDE07G2078' => 'cde', 'CDE11G0611' => 'cde', 'Cfa001683' => 'cfa', 'Cfa001734' => 'cfa', 'Cfa001737' => 'cfa', 'Cfa003751' => 'cfa', 'Cfa012019' => 'cfa', 'Cfa017353' => 'cfa', 'Cfa017732' => 'cfa', 'Cfa022464' => 'cfa', 'Ciclev10012400m.g' => 'ccl', 'Ciclev10021242m.g' => 'ccl', 'Ciclev10021302m.g' => 'ccl', 'Ciclev10021463m.g' => 'ccl', 'Ciclev10032359m.g' => 'ccl', 'CiPaw.01G081000' => 'cil', 'CiPaw.01G262500' => 'cil', 'CiPaw.01G269800' => 'cil', 'CiPaw.02G168400' => 'cil', 'CiPaw.05G119500' => 'cil', 'CiPaw.11G147300' => 'cil', 'ClCG01G003630' => 'cla', 'ClCG05G000510' => 'cla', 'ClCG05G002300' => 'cla', 'ClCG08G007650' => 'cla', 'ClCG10G021250' => 'cla', 'COL.COLO4_06218' => 'col', 'COL.COLO4_12538' => 'col', 'COL.COLO4_14775' => 'col', 'COL.COLO4_23875' => 'col', 'Cpa.g.sc141.16' => 'cpa', 'Cpa.g.sc169.16' => 'cpa', 'Cpa.g.sc244.4' => 'cpa', 'Cpa.g.sc244.5' => 'cpa', 'Cpa.g.sc29.87' => 'cpa', 'Cpa.g.sc53.115' => 'cpa', 'Cre03.g207502' => 'cre', 'Cre06.g277000' => 'cre', 'Cre09.g394050' => 'cre', 'CsaV3_3G007680' => 'csa', 'CsaV3_3G009710' => 'csa', 'CsaV3_3G034790' => 'csa', 'CsaV3_5G003750' => 'csa', 'CsaV3_6G036620' => 'csa', 'CSS0002288' => 'camsi', 'CSS0011250' => 'camsi', 'CSS0021619' => 'camsi', 'CSS0046701' => 'camsi', 'DCAR_006420' => 'dca', 'DCAR_006865' => 'dca', 'DCAR_008558' => 'dca', 'DCAR_028754' => 'dca', 'DCAR_028755' => 'dca', 'Dinv31218' => 'din', 'Dinv32371' => 'din', 'Dinv34250' => 'din', 'Dinv37156' => 'din', 'Dinv43704' => 'din', 'Duzib093G1811' => 'dzi', 'Duzib106G1622' => 'dzi', 'Duzib114G0504' => 'dzi', 'Duzib128G0338' => 'dzi', 'Duzib128G1577' => 'dzi', 'Duzib133G0104' => 'dzi', 'Duzib133G1080' => 'dzi', 'Duzib138G0324' => 'dzi', 'Duzib138G0394' => 'dzi', 'Duzib205G0122' => 'dzi', 'Duzib268G1020' => 'dzi', 'Duzib268G1359' => 'dzi', 'ECA232G3929' => 'eca', 'ECA236G2210' => 'eca', 'ECA236G2287' => 'eca', 'ECA240G4568' => 'eca', 'ECA247G0894' => 'eca', 'EL10Ac1g00200' => 'bvu', 'EL10Ac1g00886' => 'bvu', 'EL10As1g23091' => 'bvu', 'EL10As1g23092' => 'bvu', 'Eucgr.A01284' => 'egr', 'Eucgr.A01285' => 'egr', 'Eucgr.D02456' => 'egr', 'Eucgr.E00018' => 'egr', 'Eucgr.E01439' => 'egr', 'Eucgr.G02859' => 'egr', 'FAN01G0168' => 'fan', 'FAN01G0453' => 'fan', 'FAN01G2761' => 'fan', 'FAN02G1239' => 'fan', 'FAN03G0645' => 'fan', 'FAN03G2707' => 'fan', 'FAN03G2978' => 'fan', 'FAN04G0227' => 'fan', 'FAN06G0091' => 'fan', 'FAN06G1418' => 'fan', 'FAN06G1512' => 'fan', 'FAN06G1986' => 'fan', 'FAN06G2905' => 'fan', 'FAN06G4325' => 'fan', 'FAN08G0033' => 'fan', 'FAN09G0642' => 'fan', 'FAN10G1763' => 'fan', 'FAN10G2026' => 'fan', 'FAN10G2513' => 'fan', 'FAN10G3402' => 'fan', 'FAN10G3564' => 'fan', 'FAN10G3987' => 'fan', 'FAN13G1490' => 'fan', 'FAN14G5857' => 'fan', 'FAN18G1188' => 'fan', 'FvH4_5g00750' => 'fve', 'FvH4_6g13410' => 'fve', 'FvH4_7g11740' => 'fve', 'FvH4_7g17410' => 'fve', 'FvH4_7g18860' => 'fve', 'Glyma.01G099100' => 'gma', 'Glyma.01G142300' => 'gma', 'Glyma.03G025500' => 'gma', 'Glyma.03G069700' => 'gma', 'Glyma.03G260000' => 'gma', 'Glyma.09G269800' => 'gma', 'Glyma.10G208700' => 'gma', 'Glyma.18G220400' => 'gma', 'Glyma.20G182000' => 'gma', 'Gohir.A01G221726' => 'ghi', 'Gohir.A07G134600' => 'ghi', 'Gohir.A07G146000' => 'ghi', 'Gohir.A08G173900' => 'ghi', 'Gohir.A09G194900' => 'ghi', 'Gohir.A10G204100' => 'ghi', 'Gohir.A11G080600' => 'ghi', 'Gohir.A11G327500' => 'ghi', 'Gohir.A12G101800' => 'ghi', 'Gohir.D01G211200' => 'ghi', 'Gohir.D07G139200' => 'ghi', 'Gohir.D07G152100' => 'ghi', 'Gohir.D08G192600' => 'ghi', 'Gohir.D09G189200' => 'ghi', 'Gohir.D10G212000' => 'ghi', 'Gohir.D11G085200' => 'ghi', 'Gohir.D11G346400' => 'ghi', 'Gohir.D12G104800' => 'ghi', 'Gorai.001G151300' => 'gra', 'Gorai.001G174100' => 'gra', 'Gorai.002G257000' => 'gra', 'Gorai.004G202600' => 'gra', 'Gorai.007G090900' => 'gra', 'Gorai.007G376700' => 'gra', 'Gorai.008G114100' => 'gra', 'Gorai.011G237900' => 'gra', 'GSVIVG01005450001' => 'vvi', 'GSVIVG01016232001' => 'vvi', 'GSVIVG01026157001' => 'vvi', 'GSVIVG01027419001' => 'vvi', 'GSVIVG01027631001' => 'vvi', 'GSVIVG01034143001' => 'vvi', 'HanXRQChr03g0093921' => 'han', 'HanXRQChr04g0120001' => 'han', 'HanXRQChr04g0122561' => 'han', 'HanXRQChr09g0246851' => 'han', 'HanXRQChr10g0293311' => 'han', 'HanXRQChr13g0425231' => 'han', 'HanXRQChr16g0532571' => 'han', 'Haze_09050' => 'cav', 'Haze_15715' => 'cav', 'Haze_15716' => 'cav', 'Haze_16803' => 'cav', 'Haze_16850' => 'cav', 'Hma1.2p1_0301F.1_g118655' => 'hma', 'Hma1.2p1_0309F.1_g120590' => 'hma', 'Hma1.2p1_0936F.1_g238900' => 'hma', 'Hma1.2p1_3552F.1_g336740' => 'hma', 'HPP92_003520' => 'vpl', 'HPP92_006628' => 'vpl', 'HPP92_006645' => 'vpl', 'HPP92_014669' => 'vpl', 'HPP92_015077' => 'vpl', 'Hund16742' => 'sun', 'Hund17022' => 'sun', 'Lalb_Chr02g0152131' => 'lal', 'Lalb_Chr05g0225371' => 'lal', 'Lalb_Chr07g0189841' => 'lal', 'Lalb_Chr07g0192961' => 'lal', 'Lalb_Chr12g0208221' => 'lal', 'Lalb_Chr13g0291211' => 'lal', 'Lalb_Chr13g0291781' => 'lal', 'Lalb_Chr18g0044651' => 'lal', 'Lalb_Chr21g0313731' => 'lal', 'Lj1g0022533' => 'lja', 'Lj2A18T50' => 'lonja', 'Lj2A92G93' => 'lonja', 'Lj3A965T73' => 'lonja', 'Lj3g0000673' => 'lja', 'Lj3g0002666' => 'lja', 'Lj4g0016985' => 'lja', 'Lj5g0003625' => 'lja', 'Lj7A529G36' => 'lonja', 'Lj9A569T49' => 'lonja', 'Lj9A604T63' => 'lonja', 'Lsat_1_v5_gn_3_132060' => 'lsa', 'Lsat_1_v5_gn_4_68941' => 'lsa', 'Lsat_1_v5_gn_5_95580' => 'lsa', 'Lsat_1_v5_gn_7_161' => 'lsa', 'Lsat_1_v5_gn_7_7041' => 'lsa', 'Lsat_1_v5_gn_9_33481' => 'lsa', 'Lsat_1_v5_gn_9_68260' => 'lsa', 'Manes.01G073100' => 'mes', 'Manes.01G266300' => 'mes', 'Manes.02G033300' => 'mes', 'Manes.05G017900' => 'mes', 'Manes.05G046100' => 'mes', 'Manes.08G080900' => 'mes', 'Manes.10G049400' => 'mes', 'Mapoly0009s0186' => 'mpo', 'Mapoly0036s0118' => 'mpo', 'Mapoly0101s0046' => 'mpo', 'MBI04_g30218_MAGBIO' => 'mbi', 'MBI04_g35564_MAGBIO' => 'mbi', 'MBI12_g34011_MAGBIO' => 'mbi', 'MBI14_g04655_MAGBIO' => 'mbi', 'MCO07G653' => 'mco', 'MCO10G173' => 'mco', 'MD01G1087100' => 'mdo', 'MD01G1104200' => 'mdo', 'MD02G1205100' => 'mdo', 'MD04G1079200' => 'mdo', 'MD04G1131400' => 'mdo', 'MD07G1121600' => 'mdo', 'MD07G1157300' => 'mdo', 'MD07G1171000' => 'mdo', 'MD12G1144500' => 'mdo', 'Medtr1g094610' => 'mtr', 'Medtr4g021795' => 'mtr', 'Medtr4g023760' => 'mtr', 'Medtr7g118050' => 'mtr', 'MELO3C005582.2' => 'cme', 'MELO3C005989.2' => 'cme', 'MELO3C006192.2' => 'cme', 'MELO3C009248.2' => 'cme', 'MELO3C019817.2' => 'cme', 'Migut.B01625' => 'egut', 'Migut.B01915' => 'egut', 'Migut.F01721' => 'egut', 'Migut.J00314' => 'egut', 'MSTRG.20742' => 'ama', 'MSTRG.8134' => 'ama', 'Nitab4.5_0000096g0010' => 'nta', 'Nitab4.5_0000202g0030' => 'nta', 'Nitab4.5_0000216g0370' => 'nta', 'Nitab4.5_0000457g0230' => 'nta', 'Nitab4.5_0001702g0170' => 'nta', 'Nitab4.5_0003607g0010' => 'nta', 'Nitab4.5_0004917g0020' => 'nta', 'Nitab4.5_0007059g0010' => 'nta', 'Nitab4.5_0007184g0010' => 'nta', 'Nitab4.5_0007346g0020' => 'nta', 'Nn1g00410' => 'nnu', 'Nn1g01252' => 'nnu', 'Nn2g11168' => 'nnu', 'Nn2g13403' => 'nnu', 'Nn2g13760' => 'nnu', 'Nn4g26380' => 'nnu', 'Oeu000806.2' => 'oeu', 'Oeu005788.1' => 'oeu', 'Oeu006900.3' => 'oeu', 'Oeu007797.1' => 'oeu', 'Oeu011932.1' => 'oeu', 'Oeu022739.1' => 'oeu', 'Oeu037918.1' => 'oeu', 'Oeu055490.2' => 'oeu', 'Os01g0844400' => 'osa', 'Os02g0819100' => 'osa', 'Os03g0804300' => 'osa', 'Os05g0458000' => 'osa', 'Os07g0467800' => 'osa', 'Os12g0602200' => 'osa', 'Peaxi162Scf00013g03444' => 'pax', 'Peaxi162Scf00094g01120' => 'pax', 'Peaxi162Scf00191g01211' => 'pax', 'Peaxi162Scf00238g01110' => 'pax', 'Peaxi162Scf00330g00719' => 'pax', 'Peaxi162Scf00627g00018' => 'pax', 'PGR031G2686' => 'pgr', 'PGR042G0809' => 'pgr', 'PGR142G0193' => 'pgr', 'PGSC0003DMG400011066' => 'stu', 'PGSC0003DMG400012041' => 'stu', 'PGSC0003DMG400013678' => 'stu', 'PGSC0003DMG400023477' => 'stu', 'PGSC0003DMG400025956' => 'stu', 'PGSC0003DMG401019151' => 'stu', 'Phvul.006G116400' => 'pvu', 'Phvul.007G097300' => 'pvu', 'Phvul.010G015000' => 'pvu', 'Phvul.010G083900' => 'pvu', 'Potri.001G117100' => 'ptr', 'Potri.002G147300' => 'ptr', 'Potri.003G115600' => 'ptr', 'Potri.006G087400' => 'ptr', 'Potri.010G226100' => 'ptr', 'Potri.014G069200' => 'ptr', 'Potri.014G104000' => 'ptr', 'Potri.016G100200' => 'ptr', 'Pp3c10_20450' => 'ppa', 'Pp3c1_42400' => 'ppa', 'Pp3c3_24390' => 'ppa', 'Pp3c3_2860' => 'ppa', 'PRCOL_00003193' => 'pco', 'Prupe.2G144500' => 'ppe', 'Prupe.2G195700' => 'ppe', 'Prupe.2G209800' => 'ppe', 'Prupe.5G080000' => 'ppe', 'Prupe.6G257900' => 'ppe', 'Psat3g001160' => 'psa', 'Psat6g181880' => 'psa', 'Psat7g233720' => 'psa', 'PSO063G7587' => 'pso', 'PSO339G2145' => 'pso', 'PSO339G3369' => 'pso', 'PSO478G2747' => 'pso', 'PSO513G0140' => 'pso', 'PSO782G1614' => 'pso', 'PSO782G4889' => 'pso', 'PSO782G5485' => 'pso', 'PSO801G0241' => 'pso', 'QL07p048854' => 'qlo', 'QL08p046745' => 'qlo', 'QL08p052606' => 'qlo', 'QL08p053414' => 'qlo', 'QL08p054868' => 'qlo', 'RcHm_v2.0_Chr1g0350251' => 'rch', 'RcHm_v2.0_Chr1g0360851' => 'rch', 'RcHm_v2.0_Chr1g0362791' => 'rch', 'RcHm_v2.0_Chr3g0466281' => 'rch', 'RcHm_v2.0_Chr7g0201481' => 'rch', 'Rhsim01G0148600' => 'rsi', 'Rhsim05G0194400' => 'rsi', 'Rhsim07G0000700' => 'rsi', 'Rhsim07G0000800' => 'rsi', 'Rhsim07G0027900' => 'rsi', 'Rhsim09G0149500' => 'rsi', 'RhsimUnG0186900' => 'rsi', 'Sabra01G0089900' => 'sbr', 'Sabra02G0114700' => 'sbr', 'Sabra02G0116300' => 'sbr', 'Sabra03G0080100' => 'sbr', 'Sabra08G0024300' => 'sbr', 'Sabra10G0174300' => 'sbr', 'Sabra14G0048900' => 'sbr', 'Sabra14G0076500' => 'sbr', 'SalBow5G2513' => 'sbo', 'Sc01g0002300' => 'sci', 'Sc01g0004450' => 'sci', 'Sc06g0001680' => 'sci', 'Sc23g0003580' => 'sci', 'Sed0000913' => 'sed', 'Sed0001655' => 'sed', 'Sed0007745' => 'sed', 'Sed0010951' => 'sed', 'Sed0017599' => 'sed', 'Sed0021405' => 'sed', 'Sed0022810' => 'sed', 'SEGI_07099' => 'sgi', 'SEGI_11931' => 'sgi', 'SEGI_13187' => 'sgi', 'SEGI_29958' => 'sgi', 'SEGI_36351' => 'sgi', 'SGA_v2.0_scaffold126G33770' => 'sas', 'SGA_v2.0_scaffold153G37003' => 'sas', 'SGA_v2.0_scaffold2G01359' => 'sas', 'SGA_v2.0_scaffold5G03064' => 'sas', 'SGA_v2.0_scaffold95G28903' => 'sas', 'SHI12701' => 'shi', 'SHI26410' => 'shi', 'SHI38997' => 'shi', 'SHI53759' => 'shi', 'SHI53886' => 'shi', 'SHI54714' => 'shi', 'SMO011G0041' => 'smo', 'SMO146G0251' => 'smo', 'SMO160G0004' => 'smo', 'SMO174G0057' => 'smo', 'SMO244G0089' => 'smo', 'SMO296G0011' => 'smo', 'Solyc01g091280.3' => 'sly', 'Solyc05g047610.3' => 'sly', 'Solyc05g047640.3' => 'sly', 'Solyc05g055630.3' => 'sly', 'Solyc10g018160.2' => 'sly', 'Solyc10g084820.2' => 'sly', 'Solyc10g086565.2' => 'sly', 'Sopen01g037030' => 'spe', 'Sopen05g027920' => 'spe', 'Sopen05g034070' => 'spe', 'Sopen10g007260' => 'spe', 'Sopen10g034260' => 'spe', 'Sopen10g035950' => 'spe', 'Sp3g07710' => 'spa', 'Sp4g27420' => 'spa', 'Sp5g02450' => 'spa', 'Sp6g01280' => 'spa', 'Sp6g38480' => 'spa', 'Sp7g20780' => 'spa', 'TAR374G1413' => 'tar', 'TAR623G1777' => 'tar', 'TAR629G2370' => 'tar', 'TAR633G1759' => 'tar', 'TAR636G3387' => 'tar', 'THA.LOC104802447' => 'tha', 'THA.LOC104813916' => 'tha', 'THA.LOC104816423' => 'tha', 'THA.LOC104817246' => 'tha', 'THA.LOC104825895' => 'tha', 'Thecc.01G335200' => 'tca', 'Thecc.01G377400' => 'tca', 'Thecc.03G262200' => 'tca', 'Thecc.05G036800' => 'tca', 'Thecc.10G080500' => 'tca', 'Thecc.10G080800' => 'tca', 'Thhalv10001560m.g' => 'esa', 'Thhalv10006120m.g' => 'esa', 'Thhalv10014375m.g' => 'esa', 'Thhalv10021264m.g' => 'esa', 'Thhalv10028856m.g' => 'esa', 'TPR.G1914' => 'tpr', 'TPR.G4757' => 'tpr', 'TPR.G5595' => 'tpr', 'TWI14G0952' => 'twi', 'TWI14G1307' => 'twi', 'TWI38G2143' => 'twi', 'TWI59G0826' => 'twi', 'TWI77G0527' => 'twi', 'TWI81G0150' => 'twi', 'unitig_21.g21018' => 'ugi', 'unitig_26.g9725' => 'ugi', 'unitig_744.g24653' => 'ugi', 'unitig_749.g13778' => 'ugi', 'unitig_899.g15035' => 'ugi', 'vmacro04296' => 'vma', 'vmacro04852' => 'vma', 'vmacro13404' => 'vma', 'vmacro20169' => 'vma', 'vmacro21014' => 'vma', 'VMungo0331G0237' => 'vmu', 'VMungo0331G0706' => 'vmu', 'VMungo0331G1361' => 'vmu', 'VMungo0331G1489' => 'vmu', 'VMungo0540G1037' => 'vmu', 'VMungo0720G2487' => 'vmu', 'VMungo0720G2721' => 'vmu', 'Zm00001eb086860' => 'zma', 'Zm00001eb104760' => 'zma', 'Zm00001eb148220' => 'zma', 'Zm00001eb259030' => 'zma', 'Zm00001eb289590' => 'zma', 'Zm00001eb420150' => 'zma' ) $gf_id = 'HOM05D000968' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000968' ) $data_identifier = 'HOM05D000968' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 19, 'bol' => (int) 9, 'bra' => (int) 12, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 5, 'ccan' => (int) 7, 'cde' => (int) 5, 'cfa' => (int) 8, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 4, 'dca' => (int) 5, 'din' => (int) 5, 'dzi' => (int) 12, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 25, 'fve' => (int) 5, 'gma' => (int) 9, 'ghi' => (int) 18, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 7, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 5, 'sun' => (int) 2, 'lal' => (int) 9, 'lja' => (int) 5, 'lonja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 9, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 2, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 3, 'stu' => (int) 6, 'pvu' => (int) 4, 'ptr' => (int) 8, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 3, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 1, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 5, 'sas' => (int) 5, 'shi' => (int) 6, 'smo' => (int) 6, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 3, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420150' $species_info = array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ) $local_species = 'can' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000968', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p31690' => 'bna', 'A03p36040' => 'bna', 'A03p53730' => 'bna', 'A04p01410' => 'bna', 'A05p05420' => 'bna', 'A05p39630' => 'bna', 'A05p39640' => 'bna', 'A09p00970' => 'bna', 'A09p53060' => 'bna', 'A10p31890' => 'bna', 'Aa31LG10G15040' => 'aar', 'Aa31LG1G21090' => 'aar', 'Aa31LG1G26900' => 'aar', 'Aa31LG3G1820' => 'aar', 'Aa31LG5G1100' => 'aar', 'Aa31LG6G4740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2265' => 'aag', 'Actinidia07998' => 'ach', 'Actinidia11266' => 'ach', 'Actinidia12682' => 'ach', 'Actinidia26479' => 'ach', 'Actinidia31406' => 'ach', 'Actinidia32437' => 'ach', 'Actinidia38862' => 'ach', 'Ah.05g174230' => 'amhyb', 'Ah.05g179070' => 'amhyb', 'Ah.05g179090' => 'amhyb', 'Ah.12g059950' => 'amhyb', 'AL3G20480' => 'aly', 'AL4G44520' => 'aly', 'AL5G43110' => 'aly', 'AL6G13890' => 'aly', 'AL6G52620' => 'aly', 'AL7G30830' => 'aly', 'Aqoxy1G00899' => 'aox', 'Aqoxy5G04333' => 'aox', 'Aqoxy7G00641' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3IZ0NN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4EF6AW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W9P8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79GA3M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C43NQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFCU6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G95YVJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCHK29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LU1UG8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX91RN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGB4B1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8DA0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9H7JI' => 'arhy', 'AT3G09320' => 'ath', 'AT3G60800' => 'ath', 'AT4G00840' => 'ath', 'AT4G22750' => 'ath', 'AT5G04270' => 'ath', 'ATR0090G003' => 'atr', 'ATR0559G349' => 'atr', 'ATR0680G261' => 'atr', 'ATR0810G048' => 'atr', 'Atru.chr12.831' => 'acertr', 'Atru.chr5.303' => 'acertr', 'Atru.chr5.748' => 'acertr', 'Atru.chr8.1999' => 'acertr', 'Atru.chr9.1436' => 'acertr', 'AUR62004211' => 'cqu', 'AUR62004548' => 'cqu', 'AUR62013637' => 'cqu', 'AUR62022662' => 'cqu', 'AUR62025777' => 'cqu', 'AUR62042386' => 'cqu', 'BcaB01g02310' => 'bca', 'BcaB01g06062' => 'bca', 'BcaB02g08975' => 'bca', 'BcaB02g08980' => 'bca', 'BcaC01g04228' => 'bca', 'BcaC01g06830' => 'bca', 'BcaC02g10186' => 'bca', 'BcaC02g12214' => 'bca', 'BcaC04g24101' => 'bca', 'BcaC05g29520' => 'bca', 'BcaC05g29661' => 'bca', 'BcaC06g32130' => 'bca', 'BcaC06g32131' => 'bca', 'BcaC07g40601' => 'bca', 'BcaC07g42641' => 'bca', 'BcaNung01038' => 'bca', 'BcaNung01676' => 'bca', 'BcaNung02480' => 'bca', 'BcaNung07376' => 'bca', 'BolC3t16146H' => 'bol', 'BolC3t16637H' => 'bol', 'BolC4t22257H' => 'bol', 'BolC4t24728H' => 'bol', 'BolC5t34517H' => 'bol', 'BolC7t45703H' => 'bol', 'BolC8t51166H' => 'bol', 'BolC9t53038H' => 'bol', 'BolC9t60000H' => 'bol', 'BraA01t01345Z' => 'bra', 'BraA01t01346Z' => 'bra', 'BraA01t01348Z' => 'bra', 'BraA03t12347Z' => 'bra', 'BraA03t12775Z' => 'bra', 'BraA03t14439Z' => 'bra', 'BraA04t15860Z' => 'bra', 'BraA05t19511Z' => 'bra', 'BraA05t22746Z' => 'bra', 'BraA09t35767Z' => 'bra', 'BraA09t40732Z' => 'bra', 'BraA10t45233Z' => 'bra', 'C03p38720' => 'bna', 'C03p43680' => 'bna', 'C04p06350' => 'bna', 'C04p31800' => 'bna', 'C05p58680' => 'bna', 'C07p52110' => 'bna', 'C08p35760' => 'bna', 'C09p01050' => 'bna', 'C09p72600' => 'bna', 'CAN.G106.2' => 'can', 'CAN.G1482.1' => 'can', 'CAN.G324.12' => 'can', 'CAN.G388.20' => 'can', 'CAN.G412.7' => 'can', 'CAN.G694.32' => 'can', 'CAN.G92.12' => 'can', 'CANSAT11G2353' => 'cansat', 'CANSAT21G1398' => 'cansat', 'CANSAT56G2456' => 'cansat', 'CANSAT56G3031' => 'cansat', 'CANSAT56G4539' => 'cansat', 'CARHR083680' => 'chi', 'CARHR171190' => 'chi', 'CARHR209010' => 'chi', 'CARHR229680' => 'chi', 'CARHR249490' => 'chi', 'Carub.0003s0844' => 'cru', 'Carub.0005s2755' => 'cru', 'Carub.0006s0322' => 'cru', 'Carub.0006s3586' => 'cru', 'Carub.0007s1855' => 'cru', 'Ca_07808_v3' => 'car', 'Ca_09535_v3' => 'car', 'Ca_10548_v3' => 'car', 'Ca_19913_v3' => 'car', 'Ca_19916_v3' => 'car', 'Ca_19975_v3' => 'car', 'CBR_g22876' => 'cbr', 'CBR_g22879' => 'cbr', 'CBR_g38491' => 'cbr', 'CBR_g54185' => 'cbr', 'CBR_g54190' => 'cbr', 'Cc02_g11020' => 'ccan', 'Cc02_g23920' => 'ccan', 'Cc02_g39860' => 'ccan', 'Cc02_g39870' => 'ccan', 'Cc03_g06760' => 'ccan', 'Cc06_g02450' => 'ccan', 'Cc09_g09450' => 'ccan', 'CDE02G1959' => 'cde', 'CDE04G0600' => 'cde', 'CDE07G1996' => 'cde', 'CDE07G2078' => 'cde', 'CDE11G0611' => 'cde', 'Cfa001683' => 'cfa', 'Cfa001734' => 'cfa', 'Cfa001737' => 'cfa', 'Cfa003751' => 'cfa', 'Cfa012019' => 'cfa', 'Cfa017353' => 'cfa', 'Cfa017732' => 'cfa', 'Cfa022464' => 'cfa', 'Ciclev10012400m.g' => 'ccl', 'Ciclev10021242m.g' => 'ccl', 'Ciclev10021302m.g' => 'ccl', 'Ciclev10021463m.g' => 'ccl', 'Ciclev10032359m.g' => 'ccl', 'CiPaw.01G081000' => 'cil', 'CiPaw.01G262500' => 'cil', 'CiPaw.01G269800' => 'cil', 'CiPaw.02G168400' => 'cil', 'CiPaw.05G119500' => 'cil', 'CiPaw.11G147300' => 'cil', 'ClCG01G003630' => 'cla', 'ClCG05G000510' => 'cla', 'ClCG05G002300' => 'cla', 'ClCG08G007650' => 'cla', 'ClCG10G021250' => 'cla', 'COL.COLO4_06218' => 'col', 'COL.COLO4_12538' => 'col', 'COL.COLO4_14775' => 'col', 'COL.COLO4_23875' => 'col', 'Cpa.g.sc141.16' => 'cpa', 'Cpa.g.sc169.16' => 'cpa', 'Cpa.g.sc244.4' => 'cpa', 'Cpa.g.sc244.5' => 'cpa', 'Cpa.g.sc29.87' => 'cpa', 'Cpa.g.sc53.115' => 'cpa', 'Cre03.g207502' => 'cre', 'Cre06.g277000' => 'cre', 'Cre09.g394050' => 'cre', 'CsaV3_3G007680' => 'csa', 'CsaV3_3G009710' => 'csa', 'CsaV3_3G034790' => 'csa', 'CsaV3_5G003750' => 'csa', 'CsaV3_6G036620' => 'csa', 'CSS0002288' => 'camsi', 'CSS0011250' => 'camsi', 'CSS0021619' => 'camsi', 'CSS0046701' => 'camsi', 'DCAR_006420' => 'dca', 'DCAR_006865' => 'dca', 'DCAR_008558' => 'dca', 'DCAR_028754' => 'dca', 'DCAR_028755' => 'dca', 'Dinv31218' => 'din', 'Dinv32371' => 'din', 'Dinv34250' => 'din', 'Dinv37156' => 'din', 'Dinv43704' => 'din', 'Duzib093G1811' => 'dzi', 'Duzib106G1622' => 'dzi', 'Duzib114G0504' => 'dzi', 'Duzib128G0338' => 'dzi', 'Duzib128G1577' => 'dzi', 'Duzib133G0104' => 'dzi', 'Duzib133G1080' => 'dzi', 'Duzib138G0324' => 'dzi', 'Duzib138G0394' => 'dzi', 'Duzib205G0122' => 'dzi', 'Duzib268G1020' => 'dzi', 'Duzib268G1359' => 'dzi', 'ECA232G3929' => 'eca', 'ECA236G2210' => 'eca', 'ECA236G2287' => 'eca', 'ECA240G4568' => 'eca', 'ECA247G0894' => 'eca', 'EL10Ac1g00200' => 'bvu', 'EL10Ac1g00886' => 'bvu', 'EL10As1g23091' => 'bvu', 'EL10As1g23092' => 'bvu', 'Eucgr.A01284' => 'egr', 'Eucgr.A01285' => 'egr', 'Eucgr.D02456' => 'egr', 'Eucgr.E00018' => 'egr', 'Eucgr.E01439' => 'egr', 'Eucgr.G02859' => 'egr', 'FAN01G0168' => 'fan', 'FAN01G0453' => 'fan', 'FAN01G2761' => 'fan', 'FAN02G1239' => 'fan', 'FAN03G0645' => 'fan', 'FAN03G2707' => 'fan', 'FAN03G2978' => 'fan', 'FAN04G0227' => 'fan', 'FAN06G0091' => 'fan', 'FAN06G1418' => 'fan', 'FAN06G1512' => 'fan', 'FAN06G1986' => 'fan', 'FAN06G2905' => 'fan', 'FAN06G4325' => 'fan', 'FAN08G0033' => 'fan', 'FAN09G0642' => 'fan', 'FAN10G1763' => 'fan', 'FAN10G2026' => 'fan', 'FAN10G2513' => 'fan', 'FAN10G3402' => 'fan', 'FAN10G3564' => 'fan', 'FAN10G3987' => 'fan', 'FAN13G1490' => 'fan', 'FAN14G5857' => 'fan', 'FAN18G1188' => 'fan', 'FvH4_5g00750' => 'fve', 'FvH4_6g13410' => 'fve', 'FvH4_7g11740' => 'fve', 'FvH4_7g17410' => 'fve', 'FvH4_7g18860' => 'fve', 'Glyma.01G099100' => 'gma', 'Glyma.01G142300' => 'gma', 'Glyma.03G025500' => 'gma', 'Glyma.03G069700' => 'gma', 'Glyma.03G260000' => 'gma', 'Glyma.09G269800' => 'gma', 'Glyma.10G208700' => 'gma', 'Glyma.18G220400' => 'gma', 'Glyma.20G182000' => 'gma', 'Gohir.A01G221726' => 'ghi', 'Gohir.A07G134600' => 'ghi', 'Gohir.A07G146000' => 'ghi', 'Gohir.A08G173900' => 'ghi', 'Gohir.A09G194900' => 'ghi', 'Gohir.A10G204100' => 'ghi', 'Gohir.A11G080600' => 'ghi', 'Gohir.A11G327500' => 'ghi', 'Gohir.A12G101800' => 'ghi', 'Gohir.D01G211200' => 'ghi', 'Gohir.D07G139200' => 'ghi', 'Gohir.D07G152100' => 'ghi', 'Gohir.D08G192600' => 'ghi', 'Gohir.D09G189200' => 'ghi', 'Gohir.D10G212000' => 'ghi', 'Gohir.D11G085200' => 'ghi', 'Gohir.D11G346400' => 'ghi', 'Gohir.D12G104800' => 'ghi', 'Gorai.001G151300' => 'gra', 'Gorai.001G174100' => 'gra', 'Gorai.002G257000' => 'gra', 'Gorai.004G202600' => 'gra', 'Gorai.007G090900' => 'gra', 'Gorai.007G376700' => 'gra', 'Gorai.008G114100' => 'gra', 'Gorai.011G237900' => 'gra', 'GSVIVG01005450001' => 'vvi', 'GSVIVG01016232001' => 'vvi', 'GSVIVG01026157001' => 'vvi', 'GSVIVG01027419001' => 'vvi', 'GSVIVG01027631001' => 'vvi', 'GSVIVG01034143001' => 'vvi', 'HanXRQChr03g0093921' => 'han', 'HanXRQChr04g0120001' => 'han', 'HanXRQChr04g0122561' => 'han', 'HanXRQChr09g0246851' => 'han', 'HanXRQChr10g0293311' => 'han', 'HanXRQChr13g0425231' => 'han', 'HanXRQChr16g0532571' => 'han', 'Haze_09050' => 'cav', 'Haze_15715' => 'cav', 'Haze_15716' => 'cav', 'Haze_16803' => 'cav', 'Haze_16850' => 'cav', 'Hma1.2p1_0301F.1_g118655' => 'hma', 'Hma1.2p1_0309F.1_g120590' => 'hma', 'Hma1.2p1_0936F.1_g238900' => 'hma', 'Hma1.2p1_3552F.1_g336740' => 'hma', 'HPP92_003520' => 'vpl', 'HPP92_006628' => 'vpl', 'HPP92_006645' => 'vpl', 'HPP92_014669' => 'vpl', 'HPP92_015077' => 'vpl', 'Hund16742' => 'sun', 'Hund17022' => 'sun', 'Lalb_Chr02g0152131' => 'lal', 'Lalb_Chr05g0225371' => 'lal', 'Lalb_Chr07g0189841' => 'lal', 'Lalb_Chr07g0192961' => 'lal', 'Lalb_Chr12g0208221' => 'lal', 'Lalb_Chr13g0291211' => 'lal', 'Lalb_Chr13g0291781' => 'lal', 'Lalb_Chr18g0044651' => 'lal', 'Lalb_Chr21g0313731' => 'lal', 'Lj1g0022533' => 'lja', 'Lj2A18T50' => 'lonja', 'Lj2A92G93' => 'lonja', 'Lj3A965T73' => 'lonja', 'Lj3g0000673' => 'lja', 'Lj3g0002666' => 'lja', 'Lj4g0016985' => 'lja', 'Lj5g0003625' => 'lja', 'Lj7A529G36' => 'lonja', 'Lj9A569T49' => 'lonja', 'Lj9A604T63' => 'lonja', 'Lsat_1_v5_gn_3_132060' => 'lsa', 'Lsat_1_v5_gn_4_68941' => 'lsa', 'Lsat_1_v5_gn_5_95580' => 'lsa', 'Lsat_1_v5_gn_7_161' => 'lsa', 'Lsat_1_v5_gn_7_7041' => 'lsa', 'Lsat_1_v5_gn_9_33481' => 'lsa', 'Lsat_1_v5_gn_9_68260' => 'lsa', 'Manes.01G073100' => 'mes', 'Manes.01G266300' => 'mes', 'Manes.02G033300' => 'mes', 'Manes.05G017900' => 'mes', 'Manes.05G046100' => 'mes', 'Manes.08G080900' => 'mes', 'Manes.10G049400' => 'mes', 'Mapoly0009s0186' => 'mpo', 'Mapoly0036s0118' => 'mpo', 'Mapoly0101s0046' => 'mpo', 'MBI04_g30218_MAGBIO' => 'mbi', 'MBI04_g35564_MAGBIO' => 'mbi', 'MBI12_g34011_MAGBIO' => 'mbi', 'MBI14_g04655_MAGBIO' => 'mbi', 'MCO07G653' => 'mco', 'MCO10G173' => 'mco', 'MD01G1087100' => 'mdo', 'MD01G1104200' => 'mdo', 'MD02G1205100' => 'mdo', 'MD04G1079200' => 'mdo', 'MD04G1131400' => 'mdo', 'MD07G1121600' => 'mdo', 'MD07G1157300' => 'mdo', 'MD07G1171000' => 'mdo', 'MD12G1144500' => 'mdo', 'Medtr1g094610' => 'mtr', 'Medtr4g021795' => 'mtr', 'Medtr4g023760' => 'mtr', 'Medtr7g118050' => 'mtr', 'MELO3C005582.2' => 'cme', 'MELO3C005989.2' => 'cme', 'MELO3C006192.2' => 'cme', 'MELO3C009248.2' => 'cme', 'MELO3C019817.2' => 'cme', 'Migut.B01625' => 'egut', 'Migut.B01915' => 'egut', 'Migut.F01721' => 'egut', 'Migut.J00314' => 'egut', 'MSTRG.20742' => 'ama', 'MSTRG.8134' => 'ama', 'Nitab4.5_0000096g0010' => 'nta', 'Nitab4.5_0000202g0030' => 'nta', 'Nitab4.5_0000216g0370' => 'nta', 'Nitab4.5_0000457g0230' => 'nta', 'Nitab4.5_0001702g0170' => 'nta', 'Nitab4.5_0003607g0010' => 'nta', 'Nitab4.5_0004917g0020' => 'nta', 'Nitab4.5_0007059g0010' => 'nta', 'Nitab4.5_0007184g0010' => 'nta', 'Nitab4.5_0007346g0020' => 'nta', 'Nn1g00410' => 'nnu', 'Nn1g01252' => 'nnu', 'Nn2g11168' => 'nnu', 'Nn2g13403' => 'nnu', 'Nn2g13760' => 'nnu', 'Nn4g26380' => 'nnu', 'Oeu000806.2' => 'oeu', 'Oeu005788.1' => 'oeu', 'Oeu006900.3' => 'oeu', 'Oeu007797.1' => 'oeu', 'Oeu011932.1' => 'oeu', 'Oeu022739.1' => 'oeu', 'Oeu037918.1' => 'oeu', 'Oeu055490.2' => 'oeu', 'Os01g0844400' => 'osa', 'Os02g0819100' => 'osa', 'Os03g0804300' => 'osa', 'Os05g0458000' => 'osa', 'Os07g0467800' => 'osa', 'Os12g0602200' => 'osa', 'Peaxi162Scf00013g03444' => 'pax', 'Peaxi162Scf00094g01120' => 'pax', 'Peaxi162Scf00191g01211' => 'pax', 'Peaxi162Scf00238g01110' => 'pax', 'Peaxi162Scf00330g00719' => 'pax', 'Peaxi162Scf00627g00018' => 'pax', 'PGR031G2686' => 'pgr', 'PGR042G0809' => 'pgr', 'PGR142G0193' => 'pgr', 'PGSC0003DMG400011066' => 'stu', 'PGSC0003DMG400012041' => 'stu', 'PGSC0003DMG400013678' => 'stu', 'PGSC0003DMG400023477' => 'stu', 'PGSC0003DMG400025956' => 'stu', 'PGSC0003DMG401019151' => 'stu', 'Phvul.006G116400' => 'pvu', 'Phvul.007G097300' => 'pvu', 'Phvul.010G015000' => 'pvu', 'Phvul.010G083900' => 'pvu', 'Potri.001G117100' => 'ptr', 'Potri.002G147300' => 'ptr', 'Potri.003G115600' => 'ptr', 'Potri.006G087400' => 'ptr', 'Potri.010G226100' => 'ptr', 'Potri.014G069200' => 'ptr', 'Potri.014G104000' => 'ptr', 'Potri.016G100200' => 'ptr', 'Pp3c10_20450' => 'ppa', 'Pp3c1_42400' => 'ppa', 'Pp3c3_24390' => 'ppa', 'Pp3c3_2860' => 'ppa', 'PRCOL_00003193' => 'pco', 'Prupe.2G144500' => 'ppe', 'Prupe.2G195700' => 'ppe', 'Prupe.2G209800' => 'ppe', 'Prupe.5G080000' => 'ppe', 'Prupe.6G257900' => 'ppe', 'Psat3g001160' => 'psa', 'Psat6g181880' => 'psa', 'Psat7g233720' => 'psa', 'PSO063G7587' => 'pso', 'PSO339G2145' => 'pso', 'PSO339G3369' => 'pso', 'PSO478G2747' => 'pso', 'PSO513G0140' => 'pso', 'PSO782G1614' => 'pso', 'PSO782G4889' => 'pso', 'PSO782G5485' => 'pso', 'PSO801G0241' => 'pso', 'QL07p048854' => 'qlo', 'QL08p046745' => 'qlo', 'QL08p052606' => 'qlo', 'QL08p053414' => 'qlo', 'QL08p054868' => 'qlo', 'RcHm_v2.0_Chr1g0350251' => 'rch', 'RcHm_v2.0_Chr1g0360851' => 'rch', 'RcHm_v2.0_Chr1g0362791' => 'rch', 'RcHm_v2.0_Chr3g0466281' => 'rch', 'RcHm_v2.0_Chr7g0201481' => 'rch', 'Rhsim01G0148600' => 'rsi', 'Rhsim05G0194400' => 'rsi', 'Rhsim07G0000700' => 'rsi', 'Rhsim07G0000800' => 'rsi', 'Rhsim07G0027900' => 'rsi', 'Rhsim09G0149500' => 'rsi', 'RhsimUnG0186900' => 'rsi', 'Sabra01G0089900' => 'sbr', 'Sabra02G0114700' => 'sbr', 'Sabra02G0116300' => 'sbr', 'Sabra03G0080100' => 'sbr', 'Sabra08G0024300' => 'sbr', 'Sabra10G0174300' => 'sbr', 'Sabra14G0048900' => 'sbr', 'Sabra14G0076500' => 'sbr', 'SalBow5G2513' => 'sbo', 'Sc01g0002300' => 'sci', 'Sc01g0004450' => 'sci', 'Sc06g0001680' => 'sci', 'Sc23g0003580' => 'sci', 'Sed0000913' => 'sed', 'Sed0001655' => 'sed', 'Sed0007745' => 'sed', 'Sed0010951' => 'sed', 'Sed0017599' => 'sed', 'Sed0021405' => 'sed', 'Sed0022810' => 'sed', 'SEGI_07099' => 'sgi', 'SEGI_11931' => 'sgi', 'SEGI_13187' => 'sgi', 'SEGI_29958' => 'sgi', 'SEGI_36351' => 'sgi', 'SGA_v2.0_scaffold126G33770' => 'sas', 'SGA_v2.0_scaffold153G37003' => 'sas', 'SGA_v2.0_scaffold2G01359' => 'sas', 'SGA_v2.0_scaffold5G03064' => 'sas', 'SGA_v2.0_scaffold95G28903' => 'sas', 'SHI12701' => 'shi', 'SHI26410' => 'shi', 'SHI38997' => 'shi', 'SHI53759' => 'shi', 'SHI53886' => 'shi', 'SHI54714' => 'shi', 'SMO011G0041' => 'smo', 'SMO146G0251' => 'smo', 'SMO160G0004' => 'smo', 'SMO174G0057' => 'smo', 'SMO244G0089' => 'smo', 'SMO296G0011' => 'smo', 'Solyc01g091280.3' => 'sly', 'Solyc05g047610.3' => 'sly', 'Solyc05g047640.3' => 'sly', 'Solyc05g055630.3' => 'sly', 'Solyc10g018160.2' => 'sly', 'Solyc10g084820.2' => 'sly', 'Solyc10g086565.2' => 'sly', 'Sopen01g037030' => 'spe', 'Sopen05g027920' => 'spe', 'Sopen05g034070' => 'spe', 'Sopen10g007260' => 'spe', 'Sopen10g034260' => 'spe', 'Sopen10g035950' => 'spe', 'Sp3g07710' => 'spa', 'Sp4g27420' => 'spa', 'Sp5g02450' => 'spa', 'Sp6g01280' => 'spa', 'Sp6g38480' => 'spa', 'Sp7g20780' => 'spa', 'TAR374G1413' => 'tar', 'TAR623G1777' => 'tar', 'TAR629G2370' => 'tar', 'TAR633G1759' => 'tar', 'TAR636G3387' => 'tar', 'THA.LOC104802447' => 'tha', 'THA.LOC104813916' => 'tha', 'THA.LOC104816423' => 'tha', 'THA.LOC104817246' => 'tha', 'THA.LOC104825895' => 'tha', 'Thecc.01G335200' => 'tca', 'Thecc.01G377400' => 'tca', 'Thecc.03G262200' => 'tca', 'Thecc.05G036800' => 'tca', 'Thecc.10G080500' => 'tca', 'Thecc.10G080800' => 'tca', 'Thhalv10001560m.g' => 'esa', 'Thhalv10006120m.g' => 'esa', 'Thhalv10014375m.g' => 'esa', 'Thhalv10021264m.g' => 'esa', 'Thhalv10028856m.g' => 'esa', 'TPR.G1914' => 'tpr', 'TPR.G4757' => 'tpr', 'TPR.G5595' => 'tpr', 'TWI14G0952' => 'twi', 'TWI14G1307' => 'twi', 'TWI38G2143' => 'twi', 'TWI59G0826' => 'twi', 'TWI77G0527' => 'twi', 'TWI81G0150' => 'twi', 'unitig_21.g21018' => 'ugi', 'unitig_26.g9725' => 'ugi', 'unitig_744.g24653' => 'ugi', 'unitig_749.g13778' => 'ugi', 'unitig_899.g15035' => 'ugi', 'vmacro04296' => 'vma', 'vmacro04852' => 'vma', 'vmacro13404' => 'vma', 'vmacro20169' => 'vma', 'vmacro21014' => 'vma', 'VMungo0331G0237' => 'vmu', 'VMungo0331G0706' => 'vmu', 'VMungo0331G1361' => 'vmu', 'VMungo0331G1489' => 'vmu', 'VMungo0540G1037' => 'vmu', 'VMungo0720G2487' => 'vmu', 'VMungo0720G2721' => 'vmu', 'Zm00001eb086860' => 'zma', 'Zm00001eb104760' => 'zma', 'Zm00001eb148220' => 'zma', 'Zm00001eb259030' => 'zma', 'Zm00001eb289590' => 'zma', 'Zm00001eb420150' => 'zma' ), 'gf_id' => 'HOM05D000968', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000968' ), 'data_identifier' => 'HOM05D000968', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000968', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p31690' => 'bna', 'A03p36040' => 'bna', 'A03p53730' => 'bna', 'A04p01410' => 'bna', 'A05p05420' => 'bna', 'A05p39630' => 'bna', 'A05p39640' => 'bna', 'A09p00970' => 'bna', 'A09p53060' => 'bna', 'A10p31890' => 'bna', 'Aa31LG10G15040' => 'aar', 'Aa31LG1G21090' => 'aar', 'Aa31LG1G26900' => 'aar', 'Aa31LG3G1820' => 'aar', 'Aa31LG5G1100' => 'aar', 'Aa31LG6G4740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2265' => 'aag', 'Actinidia07998' => 'ach', 'Actinidia11266' => 'ach', 'Actinidia12682' => 'ach', 'Actinidia26479' => 'ach', 'Actinidia31406' => 'ach', 'Actinidia32437' => 'ach', 'Actinidia38862' => 'ach', 'Ah.05g174230' => 'amhyb', 'Ah.05g179070' => 'amhyb', 'Ah.05g179090' => 'amhyb', 'Ah.12g059950' => 'amhyb', 'AL3G20480' => 'aly', 'AL4G44520' => 'aly', 'AL5G43110' => 'aly', 'AL6G13890' => 'aly', 'AL6G52620' => 'aly', 'AL7G30830' => 'aly', 'Aqoxy1G00899' => 'aox', 'Aqoxy5G04333' => 'aox', 'Aqoxy7G00641' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3IZ0NN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4EF6AW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W9P8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79GA3M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C43NQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFCU6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G95YVJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCHK29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LU1UG8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX91RN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGB4B1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8DA0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9H7JI' => 'arhy', 'AT3G09320' => 'ath', 'AT3G60800' => 'ath', 'AT4G00840' => 'ath', 'AT4G22750' => 'ath', 'AT5G04270' => 'ath', 'ATR0090G003' => 'atr', 'ATR0559G349' => 'atr', 'ATR0680G261' => 'atr', 'ATR0810G048' => 'atr', 'Atru.chr12.831' => 'acertr', 'Atru.chr5.303' => 'acertr', 'Atru.chr5.748' => 'acertr', 'Atru.chr8.1999' => 'acertr', 'Atru.chr9.1436' => 'acertr', 'AUR62004211' => 'cqu', 'AUR62004548' => 'cqu', 'AUR62013637' => 'cqu', 'AUR62022662' => 'cqu', 'AUR62025777' => 'cqu', 'AUR62042386' => 'cqu', 'BcaB01g02310' => 'bca', 'BcaB01g06062' => 'bca', 'BcaB02g08975' => 'bca', 'BcaB02g08980' => 'bca', 'BcaC01g04228' => 'bca', 'BcaC01g06830' => 'bca', 'BcaC02g10186' => 'bca', 'BcaC02g12214' => 'bca', 'BcaC04g24101' => 'bca', 'BcaC05g29520' => 'bca', 'BcaC05g29661' => 'bca', 'BcaC06g32130' => 'bca', 'BcaC06g32131' => 'bca', 'BcaC07g40601' => 'bca', 'BcaC07g42641' => 'bca', 'BcaNung01038' => 'bca', 'BcaNung01676' => 'bca', 'BcaNung02480' => 'bca', 'BcaNung07376' => 'bca', 'BolC3t16146H' => 'bol', 'BolC3t16637H' => 'bol', 'BolC4t22257H' => 'bol', 'BolC4t24728H' => 'bol', 'BolC5t34517H' => 'bol', 'BolC7t45703H' => 'bol', 'BolC8t51166H' => 'bol', 'BolC9t53038H' => 'bol', 'BolC9t60000H' => 'bol', 'BraA01t01345Z' => 'bra', 'BraA01t01346Z' => 'bra', 'BraA01t01348Z' => 'bra', 'BraA03t12347Z' => 'bra', 'BraA03t12775Z' => 'bra', 'BraA03t14439Z' => 'bra', 'BraA04t15860Z' => 'bra', 'BraA05t19511Z' => 'bra', 'BraA05t22746Z' => 'bra', 'BraA09t35767Z' => 'bra', 'BraA09t40732Z' => 'bra', 'BraA10t45233Z' => 'bra', 'C03p38720' => 'bna', 'C03p43680' => 'bna', 'C04p06350' => 'bna', 'C04p31800' => 'bna', 'C05p58680' => 'bna', 'C07p52110' => 'bna', 'C08p35760' => 'bna', 'C09p01050' => 'bna', 'C09p72600' => 'bna', 'CAN.G106.2' => 'can', 'CAN.G1482.1' => 'can', 'CAN.G324.12' => 'can', 'CAN.G388.20' => 'can', 'CAN.G412.7' => 'can', 'CAN.G694.32' => 'can', 'CAN.G92.12' => 'can', 'CANSAT11G2353' => 'cansat', 'CANSAT21G1398' => 'cansat', 'CANSAT56G2456' => 'cansat', 'CANSAT56G3031' => 'cansat', 'CANSAT56G4539' => 'cansat', 'CARHR083680' => 'chi', 'CARHR171190' => 'chi', 'CARHR209010' => 'chi', 'CARHR229680' => 'chi', 'CARHR249490' => 'chi', 'Carub.0003s0844' => 'cru', 'Carub.0005s2755' => 'cru', 'Carub.0006s0322' => 'cru', 'Carub.0006s3586' => 'cru', 'Carub.0007s1855' => 'cru', 'Ca_07808_v3' => 'car', 'Ca_09535_v3' => 'car', 'Ca_10548_v3' => 'car', 'Ca_19913_v3' => 'car', 'Ca_19916_v3' => 'car', 'Ca_19975_v3' => 'car', 'CBR_g22876' => 'cbr', 'CBR_g22879' => 'cbr', 'CBR_g38491' => 'cbr', 'CBR_g54185' => 'cbr', 'CBR_g54190' => 'cbr', 'Cc02_g11020' => 'ccan', 'Cc02_g23920' => 'ccan', 'Cc02_g39860' => 'ccan', 'Cc02_g39870' => 'ccan', 'Cc03_g06760' => 'ccan', 'Cc06_g02450' => 'ccan', 'Cc09_g09450' => 'ccan', 'CDE02G1959' => 'cde', 'CDE04G0600' => 'cde', 'CDE07G1996' => 'cde', 'CDE07G2078' => 'cde', 'CDE11G0611' => 'cde', 'Cfa001683' => 'cfa', 'Cfa001734' => 'cfa', 'Cfa001737' => 'cfa', 'Cfa003751' => 'cfa', 'Cfa012019' => 'cfa', 'Cfa017353' => 'cfa', 'Cfa017732' => 'cfa', 'Cfa022464' => 'cfa', 'Ciclev10012400m.g' => 'ccl', 'Ciclev10021242m.g' => 'ccl', 'Ciclev10021302m.g' => 'ccl', 'Ciclev10021463m.g' => 'ccl', 'Ciclev10032359m.g' => 'ccl', 'CiPaw.01G081000' => 'cil', 'CiPaw.01G262500' => 'cil', 'CiPaw.01G269800' => 'cil', 'CiPaw.02G168400' => 'cil', 'CiPaw.05G119500' => 'cil', 'CiPaw.11G147300' => 'cil', 'ClCG01G003630' => 'cla', 'ClCG05G000510' => 'cla', 'ClCG05G002300' => 'cla', 'ClCG08G007650' => 'cla', 'ClCG10G021250' => 'cla', 'COL.COLO4_06218' => 'col', 'COL.COLO4_12538' => 'col', 'COL.COLO4_14775' => 'col', 'COL.COLO4_23875' => 'col', 'Cpa.g.sc141.16' => 'cpa', 'Cpa.g.sc169.16' => 'cpa', 'Cpa.g.sc244.4' => 'cpa', 'Cpa.g.sc244.5' => 'cpa', 'Cpa.g.sc29.87' => 'cpa', 'Cpa.g.sc53.115' => 'cpa', 'Cre03.g207502' => 'cre', 'Cre06.g277000' => 'cre', 'Cre09.g394050' => 'cre', 'CsaV3_3G007680' => 'csa', 'CsaV3_3G009710' => 'csa', 'CsaV3_3G034790' => 'csa', 'CsaV3_5G003750' => 'csa', 'CsaV3_6G036620' => 'csa', 'CSS0002288' => 'camsi', 'CSS0011250' => 'camsi', 'CSS0021619' => 'camsi', 'CSS0046701' => 'camsi', 'DCAR_006420' => 'dca', 'DCAR_006865' => 'dca', 'DCAR_008558' => 'dca', 'DCAR_028754' => 'dca', 'DCAR_028755' => 'dca', 'Dinv31218' => 'din', 'Dinv32371' => 'din', 'Dinv34250' => 'din', 'Dinv37156' => 'din', 'Dinv43704' => 'din', 'Duzib093G1811' => 'dzi', 'Duzib106G1622' => 'dzi', 'Duzib114G0504' => 'dzi', 'Duzib128G0338' => 'dzi', 'Duzib128G1577' => 'dzi', 'Duzib133G0104' => 'dzi', 'Duzib133G1080' => 'dzi', 'Duzib138G0324' => 'dzi', 'Duzib138G0394' => 'dzi', 'Duzib205G0122' => 'dzi', 'Duzib268G1020' => 'dzi', 'Duzib268G1359' => 'dzi', 'ECA232G3929' => 'eca', 'ECA236G2210' => 'eca', 'ECA236G2287' => 'eca', 'ECA240G4568' => 'eca', 'ECA247G0894' => 'eca', 'EL10Ac1g00200' => 'bvu', 'EL10Ac1g00886' => 'bvu', 'EL10As1g23091' => 'bvu', 'EL10As1g23092' => 'bvu', 'Eucgr.A01284' => 'egr', 'Eucgr.A01285' => 'egr', 'Eucgr.D02456' => 'egr', 'Eucgr.E00018' => 'egr', 'Eucgr.E01439' => 'egr', 'Eucgr.G02859' => 'egr', 'FAN01G0168' => 'fan', 'FAN01G0453' => 'fan', 'FAN01G2761' => 'fan', 'FAN02G1239' => 'fan', 'FAN03G0645' => 'fan', 'FAN03G2707' => 'fan', 'FAN03G2978' => 'fan', 'FAN04G0227' => 'fan', 'FAN06G0091' => 'fan', 'FAN06G1418' => 'fan', 'FAN06G1512' => 'fan', 'FAN06G1986' => 'fan', 'FAN06G2905' => 'fan', 'FAN06G4325' => 'fan', 'FAN08G0033' => 'fan', 'FAN09G0642' => 'fan', 'FAN10G1763' => 'fan', 'FAN10G2026' => 'fan', 'FAN10G2513' => 'fan', 'FAN10G3402' => 'fan', 'FAN10G3564' => 'fan', 'FAN10G3987' => 'fan', 'FAN13G1490' => 'fan', 'FAN14G5857' => 'fan', 'FAN18G1188' => 'fan', 'FvH4_5g00750' => 'fve', 'FvH4_6g13410' => 'fve', 'FvH4_7g11740' => 'fve', 'FvH4_7g17410' => 'fve', 'FvH4_7g18860' => 'fve', 'Glyma.01G099100' => 'gma', 'Glyma.01G142300' => 'gma', 'Glyma.03G025500' => 'gma', 'Glyma.03G069700' => 'gma', 'Glyma.03G260000' => 'gma', 'Glyma.09G269800' => 'gma', 'Glyma.10G208700' => 'gma', 'Glyma.18G220400' => 'gma', 'Glyma.20G182000' => 'gma', 'Gohir.A01G221726' => 'ghi', 'Gohir.A07G134600' => 'ghi', 'Gohir.A07G146000' => 'ghi', 'Gohir.A08G173900' => 'ghi', 'Gohir.A09G194900' => 'ghi', 'Gohir.A10G204100' => 'ghi', 'Gohir.A11G080600' => 'ghi', 'Gohir.A11G327500' => 'ghi', 'Gohir.A12G101800' => 'ghi', 'Gohir.D01G211200' => 'ghi', 'Gohir.D07G139200' => 'ghi', 'Gohir.D07G152100' => 'ghi', 'Gohir.D08G192600' => 'ghi', 'Gohir.D09G189200' => 'ghi', 'Gohir.D10G212000' => 'ghi', 'Gohir.D11G085200' => 'ghi', 'Gohir.D11G346400' => 'ghi', 'Gohir.D12G104800' => 'ghi', 'Gorai.001G151300' => 'gra', 'Gorai.001G174100' => 'gra', 'Gorai.002G257000' => 'gra', 'Gorai.004G202600' => 'gra', 'Gorai.007G090900' => 'gra', 'Gorai.007G376700' => 'gra', 'Gorai.008G114100' => 'gra', 'Gorai.011G237900' => 'gra', 'GSVIVG01005450001' => 'vvi', 'GSVIVG01016232001' => 'vvi', 'GSVIVG01026157001' => 'vvi', 'GSVIVG01027419001' => 'vvi', 'GSVIVG01027631001' => 'vvi', 'GSVIVG01034143001' => 'vvi', 'HanXRQChr03g0093921' => 'han', 'HanXRQChr04g0120001' => 'han', 'HanXRQChr04g0122561' => 'han', 'HanXRQChr09g0246851' => 'han', 'HanXRQChr10g0293311' => 'han', 'HanXRQChr13g0425231' => 'han', 'HanXRQChr16g0532571' => 'han', 'Haze_09050' => 'cav', 'Haze_15715' => 'cav', 'Haze_15716' => 'cav', 'Haze_16803' => 'cav', 'Haze_16850' => 'cav', 'Hma1.2p1_0301F.1_g118655' => 'hma', 'Hma1.2p1_0309F.1_g120590' => 'hma', 'Hma1.2p1_0936F.1_g238900' => 'hma', 'Hma1.2p1_3552F.1_g336740' => 'hma', 'HPP92_003520' => 'vpl', 'HPP92_006628' => 'vpl', 'HPP92_006645' => 'vpl', 'HPP92_014669' => 'vpl', 'HPP92_015077' => 'vpl', 'Hund16742' => 'sun', 'Hund17022' => 'sun', 'Lalb_Chr02g0152131' => 'lal', 'Lalb_Chr05g0225371' => 'lal', 'Lalb_Chr07g0189841' => 'lal', 'Lalb_Chr07g0192961' => 'lal', 'Lalb_Chr12g0208221' => 'lal', 'Lalb_Chr13g0291211' => 'lal', 'Lalb_Chr13g0291781' => 'lal', 'Lalb_Chr18g0044651' => 'lal', 'Lalb_Chr21g0313731' => 'lal', 'Lj1g0022533' => 'lja', 'Lj2A18T50' => 'lonja', 'Lj2A92G93' => 'lonja', 'Lj3A965T73' => 'lonja', 'Lj3g0000673' => 'lja', 'Lj3g0002666' => 'lja', 'Lj4g0016985' => 'lja', 'Lj5g0003625' => 'lja', 'Lj7A529G36' => 'lonja', 'Lj9A569T49' => 'lonja', 'Lj9A604T63' => 'lonja', 'Lsat_1_v5_gn_3_132060' => 'lsa', 'Lsat_1_v5_gn_4_68941' => 'lsa', 'Lsat_1_v5_gn_5_95580' => 'lsa', 'Lsat_1_v5_gn_7_161' => 'lsa', 'Lsat_1_v5_gn_7_7041' => 'lsa', 'Lsat_1_v5_gn_9_33481' => 'lsa', 'Lsat_1_v5_gn_9_68260' => 'lsa', 'Manes.01G073100' => 'mes', 'Manes.01G266300' => 'mes', 'Manes.02G033300' => 'mes', 'Manes.05G017900' => 'mes', 'Manes.05G046100' => 'mes', 'Manes.08G080900' => 'mes', 'Manes.10G049400' => 'mes', 'Mapoly0009s0186' => 'mpo', 'Mapoly0036s0118' => 'mpo', 'Mapoly0101s0046' => 'mpo', 'MBI04_g30218_MAGBIO' => 'mbi', 'MBI04_g35564_MAGBIO' => 'mbi', 'MBI12_g34011_MAGBIO' => 'mbi', 'MBI14_g04655_MAGBIO' => 'mbi', 'MCO07G653' => 'mco', 'MCO10G173' => 'mco', 'MD01G1087100' => 'mdo', 'MD01G1104200' => 'mdo', 'MD02G1205100' => 'mdo', 'MD04G1079200' => 'mdo', 'MD04G1131400' => 'mdo', 'MD07G1121600' => 'mdo', 'MD07G1157300' => 'mdo', 'MD07G1171000' => 'mdo', 'MD12G1144500' => 'mdo', 'Medtr1g094610' => 'mtr', 'Medtr4g021795' => 'mtr', 'Medtr4g023760' => 'mtr', 'Medtr7g118050' => 'mtr', 'MELO3C005582.2' => 'cme', 'MELO3C005989.2' => 'cme', 'MELO3C006192.2' => 'cme', 'MELO3C009248.2' => 'cme', 'MELO3C019817.2' => 'cme', 'Migut.B01625' => 'egut', 'Migut.B01915' => 'egut', 'Migut.F01721' => 'egut', 'Migut.J00314' => 'egut', 'MSTRG.20742' => 'ama', 'MSTRG.8134' => 'ama', 'Nitab4.5_0000096g0010' => 'nta', 'Nitab4.5_0000202g0030' => 'nta', 'Nitab4.5_0000216g0370' => 'nta', 'Nitab4.5_0000457g0230' => 'nta', 'Nitab4.5_0001702g0170' => 'nta', 'Nitab4.5_0003607g0010' => 'nta', 'Nitab4.5_0004917g0020' => 'nta', 'Nitab4.5_0007059g0010' => 'nta', 'Nitab4.5_0007184g0010' => 'nta', 'Nitab4.5_0007346g0020' => 'nta', 'Nn1g00410' => 'nnu', 'Nn1g01252' => 'nnu', 'Nn2g11168' => 'nnu', 'Nn2g13403' => 'nnu', 'Nn2g13760' => 'nnu', 'Nn4g26380' => 'nnu', 'Oeu000806.2' => 'oeu', 'Oeu005788.1' => 'oeu', 'Oeu006900.3' => 'oeu', 'Oeu007797.1' => 'oeu', 'Oeu011932.1' => 'oeu', 'Oeu022739.1' => 'oeu', 'Oeu037918.1' => 'oeu', 'Oeu055490.2' => 'oeu', 'Os01g0844400' => 'osa', 'Os02g0819100' => 'osa', 'Os03g0804300' => 'osa', 'Os05g0458000' => 'osa', 'Os07g0467800' => 'osa', 'Os12g0602200' => 'osa', 'Peaxi162Scf00013g03444' => 'pax', 'Peaxi162Scf00094g01120' => 'pax', 'Peaxi162Scf00191g01211' => 'pax', 'Peaxi162Scf00238g01110' => 'pax', 'Peaxi162Scf00330g00719' => 'pax', 'Peaxi162Scf00627g00018' => 'pax', 'PGR031G2686' => 'pgr', 'PGR042G0809' => 'pgr', 'PGR142G0193' => 'pgr', 'PGSC0003DMG400011066' => 'stu', 'PGSC0003DMG400012041' => 'stu', 'PGSC0003DMG400013678' => 'stu', 'PGSC0003DMG400023477' => 'stu', 'PGSC0003DMG400025956' => 'stu', 'PGSC0003DMG401019151' => 'stu', 'Phvul.006G116400' => 'pvu', 'Phvul.007G097300' => 'pvu', 'Phvul.010G015000' => 'pvu', 'Phvul.010G083900' => 'pvu', 'Potri.001G117100' => 'ptr', 'Potri.002G147300' => 'ptr', 'Potri.003G115600' => 'ptr', 'Potri.006G087400' => 'ptr', 'Potri.010G226100' => 'ptr', 'Potri.014G069200' => 'ptr', 'Potri.014G104000' => 'ptr', 'Potri.016G100200' => 'ptr', 'Pp3c10_20450' => 'ppa', 'Pp3c1_42400' => 'ppa', 'Pp3c3_24390' => 'ppa', 'Pp3c3_2860' => 'ppa', 'PRCOL_00003193' => 'pco', 'Prupe.2G144500' => 'ppe', 'Prupe.2G195700' => 'ppe', 'Prupe.2G209800' => 'ppe', 'Prupe.5G080000' => 'ppe', 'Prupe.6G257900' => 'ppe', 'Psat3g001160' => 'psa', 'Psat6g181880' => 'psa', 'Psat7g233720' => 'psa', 'PSO063G7587' => 'pso', 'PSO339G2145' => 'pso', 'PSO339G3369' => 'pso', 'PSO478G2747' => 'pso', 'PSO513G0140' => 'pso', 'PSO782G1614' => 'pso', 'PSO782G4889' => 'pso', 'PSO782G5485' => 'pso', 'PSO801G0241' => 'pso', 'QL07p048854' => 'qlo', 'QL08p046745' => 'qlo', 'QL08p052606' => 'qlo', 'QL08p053414' => 'qlo', 'QL08p054868' => 'qlo', 'RcHm_v2.0_Chr1g0350251' => 'rch', 'RcHm_v2.0_Chr1g0360851' => 'rch', 'RcHm_v2.0_Chr1g0362791' => 'rch', 'RcHm_v2.0_Chr3g0466281' => 'rch', 'RcHm_v2.0_Chr7g0201481' => 'rch', 'Rhsim01G0148600' => 'rsi', 'Rhsim05G0194400' => 'rsi', 'Rhsim07G0000700' => 'rsi', 'Rhsim07G0000800' => 'rsi', 'Rhsim07G0027900' => 'rsi', 'Rhsim09G0149500' => 'rsi', 'RhsimUnG0186900' => 'rsi', 'Sabra01G0089900' => 'sbr', 'Sabra02G0114700' => 'sbr', 'Sabra02G0116300' => 'sbr', 'Sabra03G0080100' => 'sbr', 'Sabra08G0024300' => 'sbr', 'Sabra10G0174300' => 'sbr', 'Sabra14G0048900' => 'sbr', 'Sabra14G0076500' => 'sbr', 'SalBow5G2513' => 'sbo', 'Sc01g0002300' => 'sci', 'Sc01g0004450' => 'sci', 'Sc06g0001680' => 'sci', 'Sc23g0003580' => 'sci', 'Sed0000913' => 'sed', 'Sed0001655' => 'sed', 'Sed0007745' => 'sed', 'Sed0010951' => 'sed', 'Sed0017599' => 'sed', 'Sed0021405' => 'sed', 'Sed0022810' => 'sed', 'SEGI_07099' => 'sgi', 'SEGI_11931' => 'sgi', 'SEGI_13187' => 'sgi', 'SEGI_29958' => 'sgi', 'SEGI_36351' => 'sgi', 'SGA_v2.0_scaffold126G33770' => 'sas', 'SGA_v2.0_scaffold153G37003' => 'sas', 'SGA_v2.0_scaffold2G01359' => 'sas', 'SGA_v2.0_scaffold5G03064' => 'sas', 'SGA_v2.0_scaffold95G28903' => 'sas', 'SHI12701' => 'shi', 'SHI26410' => 'shi', 'SHI38997' => 'shi', 'SHI53759' => 'shi', 'SHI53886' => 'shi', 'SHI54714' => 'shi', 'SMO011G0041' => 'smo', 'SMO146G0251' => 'smo', 'SMO160G0004' => 'smo', 'SMO174G0057' => 'smo', 'SMO244G0089' => 'smo', 'SMO296G0011' => 'smo', 'Solyc01g091280.3' => 'sly', 'Solyc05g047610.3' => 'sly', 'Solyc05g047640.3' => 'sly', 'Solyc05g055630.3' => 'sly', 'Solyc10g018160.2' => 'sly', 'Solyc10g084820.2' => 'sly', 'Solyc10g086565.2' => 'sly', 'Sopen01g037030' => 'spe', 'Sopen05g027920' => 'spe', 'Sopen05g034070' => 'spe', 'Sopen10g007260' => 'spe', 'Sopen10g034260' => 'spe', 'Sopen10g035950' => 'spe', 'Sp3g07710' => 'spa', 'Sp4g27420' => 'spa', 'Sp5g02450' => 'spa', 'Sp6g01280' => 'spa', 'Sp6g38480' => 'spa', 'Sp7g20780' => 'spa', 'TAR374G1413' => 'tar', 'TAR623G1777' => 'tar', 'TAR629G2370' => 'tar', 'TAR633G1759' => 'tar', 'TAR636G3387' => 'tar', 'THA.LOC104802447' => 'tha', 'THA.LOC104813916' => 'tha', 'THA.LOC104816423' => 'tha', 'THA.LOC104817246' => 'tha', 'THA.LOC104825895' => 'tha', 'Thecc.01G335200' => 'tca', 'Thecc.01G377400' => 'tca', 'Thecc.03G262200' => 'tca', 'Thecc.05G036800' => 'tca', 'Thecc.10G080500' => 'tca', 'Thecc.10G080800' => 'tca', 'Thhalv10001560m.g' => 'esa', 'Thhalv10006120m.g' => 'esa', 'Thhalv10014375m.g' => 'esa', 'Thhalv10021264m.g' => 'esa', 'Thhalv10028856m.g' => 'esa', 'TPR.G1914' => 'tpr', 'TPR.G4757' => 'tpr', 'TPR.G5595' => 'tpr', 'TWI14G0952' => 'twi', 'TWI14G1307' => 'twi', 'TWI38G2143' => 'twi', 'TWI59G0826' => 'twi', 'TWI77G0527' => 'twi', 'TWI81G0150' => 'twi', 'unitig_21.g21018' => 'ugi', 'unitig_26.g9725' => 'ugi', 'unitig_744.g24653' => 'ugi', 'unitig_749.g13778' => 'ugi', 'unitig_899.g15035' => 'ugi', 'vmacro04296' => 'vma', 'vmacro04852' => 'vma', 'vmacro13404' => 'vma', 'vmacro20169' => 'vma', 'vmacro21014' => 'vma', 'VMungo0331G0237' => 'vmu', 'VMungo0331G0706' => 'vmu', 'VMungo0331G1361' => 'vmu', 'VMungo0331G1489' => 'vmu', 'VMungo0540G1037' => 'vmu', 'VMungo0720G2487' => 'vmu', 'VMungo0720G2721' => 'vmu', 'Zm00001eb086860' => 'zma', 'Zm00001eb104760' => 'zma', 'Zm00001eb148220' => 'zma', 'Zm00001eb259030' => 'zma', 'Zm00001eb289590' => 'zma', 'Zm00001eb420150' => 'zma' ) $gf_id = 'HOM05D000968' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000968' ) $data_identifier = 'HOM05D000968' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 19, 'bol' => (int) 9, 'bra' => (int) 12, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 5, 'ccan' => (int) 7, 'cde' => (int) 5, 'cfa' => (int) 8, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 4, 'dca' => (int) 5, 'din' => (int) 5, 'dzi' => (int) 12, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 25, 'fve' => (int) 5, 'gma' => (int) 9, 'ghi' => (int) 18, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 7, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 5, 'sun' => (int) 2, 'lal' => (int) 9, 'lja' => (int) 5, 'lonja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 9, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 2, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 3, 'stu' => (int) 6, 'pvu' => (int) 4, 'ptr' => (int) 8, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 3, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 1, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 5, 'sas' => (int) 5, 'shi' => (int) 6, 'smo' => (int) 6, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 3, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420150' $species_info = array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ) $local_species = 'can' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000968', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p31690' => 'bna', 'A03p36040' => 'bna', 'A03p53730' => 'bna', 'A04p01410' => 'bna', 'A05p05420' => 'bna', 'A05p39630' => 'bna', 'A05p39640' => 'bna', 'A09p00970' => 'bna', 'A09p53060' => 'bna', 'A10p31890' => 'bna', 'Aa31LG10G15040' => 'aar', 'Aa31LG1G21090' => 'aar', 'Aa31LG1G26900' => 'aar', 'Aa31LG3G1820' => 'aar', 'Aa31LG5G1100' => 'aar', 'Aa31LG6G4740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2265' => 'aag', 'Actinidia07998' => 'ach', 'Actinidia11266' => 'ach', 'Actinidia12682' => 'ach', 'Actinidia26479' => 'ach', 'Actinidia31406' => 'ach', 'Actinidia32437' => 'ach', 'Actinidia38862' => 'ach', 'Ah.05g174230' => 'amhyb', 'Ah.05g179070' => 'amhyb', 'Ah.05g179090' => 'amhyb', 'Ah.12g059950' => 'amhyb', 'AL3G20480' => 'aly', 'AL4G44520' => 'aly', 'AL5G43110' => 'aly', 'AL6G13890' => 'aly', 'AL6G52620' => 'aly', 'AL7G30830' => 'aly', 'Aqoxy1G00899' => 'aox', 'Aqoxy5G04333' => 'aox', 'Aqoxy7G00641' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3IZ0NN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4EF6AW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W9P8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79GA3M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C43NQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFCU6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G95YVJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCHK29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LU1UG8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX91RN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGB4B1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8DA0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9H7JI' => 'arhy', 'AT3G09320' => 'ath', 'AT3G60800' => 'ath', 'AT4G00840' => 'ath', 'AT4G22750' => 'ath', 'AT5G04270' => 'ath', 'ATR0090G003' => 'atr', 'ATR0559G349' => 'atr', 'ATR0680G261' => 'atr', 'ATR0810G048' => 'atr', 'Atru.chr12.831' => 'acertr', 'Atru.chr5.303' => 'acertr', 'Atru.chr5.748' => 'acertr', 'Atru.chr8.1999' => 'acertr', 'Atru.chr9.1436' => 'acertr', 'AUR62004211' => 'cqu', 'AUR62004548' => 'cqu', 'AUR62013637' => 'cqu', 'AUR62022662' => 'cqu', 'AUR62025777' => 'cqu', 'AUR62042386' => 'cqu', 'BcaB01g02310' => 'bca', 'BcaB01g06062' => 'bca', 'BcaB02g08975' => 'bca', 'BcaB02g08980' => 'bca', 'BcaC01g04228' => 'bca', 'BcaC01g06830' => 'bca', 'BcaC02g10186' => 'bca', 'BcaC02g12214' => 'bca', 'BcaC04g24101' => 'bca', 'BcaC05g29520' => 'bca', 'BcaC05g29661' => 'bca', 'BcaC06g32130' => 'bca', 'BcaC06g32131' => 'bca', 'BcaC07g40601' => 'bca', 'BcaC07g42641' => 'bca', 'BcaNung01038' => 'bca', 'BcaNung01676' => 'bca', 'BcaNung02480' => 'bca', 'BcaNung07376' => 'bca', 'BolC3t16146H' => 'bol', 'BolC3t16637H' => 'bol', 'BolC4t22257H' => 'bol', 'BolC4t24728H' => 'bol', 'BolC5t34517H' => 'bol', 'BolC7t45703H' => 'bol', 'BolC8t51166H' => 'bol', 'BolC9t53038H' => 'bol', 'BolC9t60000H' => 'bol', 'BraA01t01345Z' => 'bra', 'BraA01t01346Z' => 'bra', 'BraA01t01348Z' => 'bra', 'BraA03t12347Z' => 'bra', 'BraA03t12775Z' => 'bra', 'BraA03t14439Z' => 'bra', 'BraA04t15860Z' => 'bra', 'BraA05t19511Z' => 'bra', 'BraA05t22746Z' => 'bra', 'BraA09t35767Z' => 'bra', 'BraA09t40732Z' => 'bra', 'BraA10t45233Z' => 'bra', 'C03p38720' => 'bna', 'C03p43680' => 'bna', 'C04p06350' => 'bna', 'C04p31800' => 'bna', 'C05p58680' => 'bna', 'C07p52110' => 'bna', 'C08p35760' => 'bna', 'C09p01050' => 'bna', 'C09p72600' => 'bna', 'CAN.G106.2' => 'can', 'CAN.G1482.1' => 'can', 'CAN.G324.12' => 'can', 'CAN.G388.20' => 'can', 'CAN.G412.7' => 'can', 'CAN.G694.32' => 'can', 'CAN.G92.12' => 'can', 'CANSAT11G2353' => 'cansat', 'CANSAT21G1398' => 'cansat', 'CANSAT56G2456' => 'cansat', 'CANSAT56G3031' => 'cansat', 'CANSAT56G4539' => 'cansat', 'CARHR083680' => 'chi', 'CARHR171190' => 'chi', 'CARHR209010' => 'chi', 'CARHR229680' => 'chi', 'CARHR249490' => 'chi', 'Carub.0003s0844' => 'cru', 'Carub.0005s2755' => 'cru', 'Carub.0006s0322' => 'cru', 'Carub.0006s3586' => 'cru', 'Carub.0007s1855' => 'cru', 'Ca_07808_v3' => 'car', 'Ca_09535_v3' => 'car', 'Ca_10548_v3' => 'car', 'Ca_19913_v3' => 'car', 'Ca_19916_v3' => 'car', 'Ca_19975_v3' => 'car', 'CBR_g22876' => 'cbr', 'CBR_g22879' => 'cbr', 'CBR_g38491' => 'cbr', 'CBR_g54185' => 'cbr', 'CBR_g54190' => 'cbr', 'Cc02_g11020' => 'ccan', 'Cc02_g23920' => 'ccan', 'Cc02_g39860' => 'ccan', 'Cc02_g39870' => 'ccan', 'Cc03_g06760' => 'ccan', 'Cc06_g02450' => 'ccan', 'Cc09_g09450' => 'ccan', 'CDE02G1959' => 'cde', 'CDE04G0600' => 'cde', 'CDE07G1996' => 'cde', 'CDE07G2078' => 'cde', 'CDE11G0611' => 'cde', 'Cfa001683' => 'cfa', 'Cfa001734' => 'cfa', 'Cfa001737' => 'cfa', 'Cfa003751' => 'cfa', 'Cfa012019' => 'cfa', 'Cfa017353' => 'cfa', 'Cfa017732' => 'cfa', 'Cfa022464' => 'cfa', 'Ciclev10012400m.g' => 'ccl', 'Ciclev10021242m.g' => 'ccl', 'Ciclev10021302m.g' => 'ccl', 'Ciclev10021463m.g' => 'ccl', 'Ciclev10032359m.g' => 'ccl', 'CiPaw.01G081000' => 'cil', 'CiPaw.01G262500' => 'cil', 'CiPaw.01G269800' => 'cil', 'CiPaw.02G168400' => 'cil', 'CiPaw.05G119500' => 'cil', 'CiPaw.11G147300' => 'cil', 'ClCG01G003630' => 'cla', 'ClCG05G000510' => 'cla', 'ClCG05G002300' => 'cla', 'ClCG08G007650' => 'cla', 'ClCG10G021250' => 'cla', 'COL.COLO4_06218' => 'col', 'COL.COLO4_12538' => 'col', 'COL.COLO4_14775' => 'col', 'COL.COLO4_23875' => 'col', 'Cpa.g.sc141.16' => 'cpa', 'Cpa.g.sc169.16' => 'cpa', 'Cpa.g.sc244.4' => 'cpa', 'Cpa.g.sc244.5' => 'cpa', 'Cpa.g.sc29.87' => 'cpa', 'Cpa.g.sc53.115' => 'cpa', 'Cre03.g207502' => 'cre', 'Cre06.g277000' => 'cre', 'Cre09.g394050' => 'cre', 'CsaV3_3G007680' => 'csa', 'CsaV3_3G009710' => 'csa', 'CsaV3_3G034790' => 'csa', 'CsaV3_5G003750' => 'csa', 'CsaV3_6G036620' => 'csa', 'CSS0002288' => 'camsi', 'CSS0011250' => 'camsi', 'CSS0021619' => 'camsi', 'CSS0046701' => 'camsi', 'DCAR_006420' => 'dca', 'DCAR_006865' => 'dca', 'DCAR_008558' => 'dca', 'DCAR_028754' => 'dca', 'DCAR_028755' => 'dca', 'Dinv31218' => 'din', 'Dinv32371' => 'din', 'Dinv34250' => 'din', 'Dinv37156' => 'din', 'Dinv43704' => 'din', 'Duzib093G1811' => 'dzi', 'Duzib106G1622' => 'dzi', 'Duzib114G0504' => 'dzi', 'Duzib128G0338' => 'dzi', 'Duzib128G1577' => 'dzi', 'Duzib133G0104' => 'dzi', 'Duzib133G1080' => 'dzi', 'Duzib138G0324' => 'dzi', 'Duzib138G0394' => 'dzi', 'Duzib205G0122' => 'dzi', 'Duzib268G1020' => 'dzi', 'Duzib268G1359' => 'dzi', 'ECA232G3929' => 'eca', 'ECA236G2210' => 'eca', 'ECA236G2287' => 'eca', 'ECA240G4568' => 'eca', 'ECA247G0894' => 'eca', 'EL10Ac1g00200' => 'bvu', 'EL10Ac1g00886' => 'bvu', 'EL10As1g23091' => 'bvu', 'EL10As1g23092' => 'bvu', 'Eucgr.A01284' => 'egr', 'Eucgr.A01285' => 'egr', 'Eucgr.D02456' => 'egr', 'Eucgr.E00018' => 'egr', 'Eucgr.E01439' => 'egr', 'Eucgr.G02859' => 'egr', 'FAN01G0168' => 'fan', 'FAN01G0453' => 'fan', 'FAN01G2761' => 'fan', 'FAN02G1239' => 'fan', 'FAN03G0645' => 'fan', 'FAN03G2707' => 'fan', 'FAN03G2978' => 'fan', 'FAN04G0227' => 'fan', 'FAN06G0091' => 'fan', 'FAN06G1418' => 'fan', 'FAN06G1512' => 'fan', 'FAN06G1986' => 'fan', 'FAN06G2905' => 'fan', 'FAN06G4325' => 'fan', 'FAN08G0033' => 'fan', 'FAN09G0642' => 'fan', 'FAN10G1763' => 'fan', 'FAN10G2026' => 'fan', 'FAN10G2513' => 'fan', 'FAN10G3402' => 'fan', 'FAN10G3564' => 'fan', 'FAN10G3987' => 'fan', 'FAN13G1490' => 'fan', 'FAN14G5857' => 'fan', 'FAN18G1188' => 'fan', 'FvH4_5g00750' => 'fve', 'FvH4_6g13410' => 'fve', 'FvH4_7g11740' => 'fve', 'FvH4_7g17410' => 'fve', 'FvH4_7g18860' => 'fve', 'Glyma.01G099100' => 'gma', 'Glyma.01G142300' => 'gma', 'Glyma.03G025500' => 'gma', 'Glyma.03G069700' => 'gma', 'Glyma.03G260000' => 'gma', 'Glyma.09G269800' => 'gma', 'Glyma.10G208700' => 'gma', 'Glyma.18G220400' => 'gma', 'Glyma.20G182000' => 'gma', 'Gohir.A01G221726' => 'ghi', 'Gohir.A07G134600' => 'ghi', 'Gohir.A07G146000' => 'ghi', 'Gohir.A08G173900' => 'ghi', 'Gohir.A09G194900' => 'ghi', 'Gohir.A10G204100' => 'ghi', 'Gohir.A11G080600' => 'ghi', 'Gohir.A11G327500' => 'ghi', 'Gohir.A12G101800' => 'ghi', 'Gohir.D01G211200' => 'ghi', 'Gohir.D07G139200' => 'ghi', 'Gohir.D07G152100' => 'ghi', 'Gohir.D08G192600' => 'ghi', 'Gohir.D09G189200' => 'ghi', 'Gohir.D10G212000' => 'ghi', 'Gohir.D11G085200' => 'ghi', 'Gohir.D11G346400' => 'ghi', 'Gohir.D12G104800' => 'ghi', 'Gorai.001G151300' => 'gra', 'Gorai.001G174100' => 'gra', 'Gorai.002G257000' => 'gra', 'Gorai.004G202600' => 'gra', 'Gorai.007G090900' => 'gra', 'Gorai.007G376700' => 'gra', 'Gorai.008G114100' => 'gra', 'Gorai.011G237900' => 'gra', 'GSVIVG01005450001' => 'vvi', 'GSVIVG01016232001' => 'vvi', 'GSVIVG01026157001' => 'vvi', 'GSVIVG01027419001' => 'vvi', 'GSVIVG01027631001' => 'vvi', 'GSVIVG01034143001' => 'vvi', 'HanXRQChr03g0093921' => 'han', 'HanXRQChr04g0120001' => 'han', 'HanXRQChr04g0122561' => 'han', 'HanXRQChr09g0246851' => 'han', 'HanXRQChr10g0293311' => 'han', 'HanXRQChr13g0425231' => 'han', 'HanXRQChr16g0532571' => 'han', 'Haze_09050' => 'cav', 'Haze_15715' => 'cav', 'Haze_15716' => 'cav', 'Haze_16803' => 'cav', 'Haze_16850' => 'cav', 'Hma1.2p1_0301F.1_g118655' => 'hma', 'Hma1.2p1_0309F.1_g120590' => 'hma', 'Hma1.2p1_0936F.1_g238900' => 'hma', 'Hma1.2p1_3552F.1_g336740' => 'hma', 'HPP92_003520' => 'vpl', 'HPP92_006628' => 'vpl', 'HPP92_006645' => 'vpl', 'HPP92_014669' => 'vpl', 'HPP92_015077' => 'vpl', 'Hund16742' => 'sun', 'Hund17022' => 'sun', 'Lalb_Chr02g0152131' => 'lal', 'Lalb_Chr05g0225371' => 'lal', 'Lalb_Chr07g0189841' => 'lal', 'Lalb_Chr07g0192961' => 'lal', 'Lalb_Chr12g0208221' => 'lal', 'Lalb_Chr13g0291211' => 'lal', 'Lalb_Chr13g0291781' => 'lal', 'Lalb_Chr18g0044651' => 'lal', 'Lalb_Chr21g0313731' => 'lal', 'Lj1g0022533' => 'lja', 'Lj2A18T50' => 'lonja', 'Lj2A92G93' => 'lonja', 'Lj3A965T73' => 'lonja', 'Lj3g0000673' => 'lja', 'Lj3g0002666' => 'lja', 'Lj4g0016985' => 'lja', 'Lj5g0003625' => 'lja', 'Lj7A529G36' => 'lonja', 'Lj9A569T49' => 'lonja', 'Lj9A604T63' => 'lonja', 'Lsat_1_v5_gn_3_132060' => 'lsa', 'Lsat_1_v5_gn_4_68941' => 'lsa', 'Lsat_1_v5_gn_5_95580' => 'lsa', 'Lsat_1_v5_gn_7_161' => 'lsa', 'Lsat_1_v5_gn_7_7041' => 'lsa', 'Lsat_1_v5_gn_9_33481' => 'lsa', 'Lsat_1_v5_gn_9_68260' => 'lsa', 'Manes.01G073100' => 'mes', 'Manes.01G266300' => 'mes', 'Manes.02G033300' => 'mes', 'Manes.05G017900' => 'mes', 'Manes.05G046100' => 'mes', 'Manes.08G080900' => 'mes', 'Manes.10G049400' => 'mes', 'Mapoly0009s0186' => 'mpo', 'Mapoly0036s0118' => 'mpo', 'Mapoly0101s0046' => 'mpo', 'MBI04_g30218_MAGBIO' => 'mbi', 'MBI04_g35564_MAGBIO' => 'mbi', 'MBI12_g34011_MAGBIO' => 'mbi', 'MBI14_g04655_MAGBIO' => 'mbi', 'MCO07G653' => 'mco', 'MCO10G173' => 'mco', 'MD01G1087100' => 'mdo', 'MD01G1104200' => 'mdo', 'MD02G1205100' => 'mdo', 'MD04G1079200' => 'mdo', 'MD04G1131400' => 'mdo', 'MD07G1121600' => 'mdo', 'MD07G1157300' => 'mdo', 'MD07G1171000' => 'mdo', 'MD12G1144500' => 'mdo', 'Medtr1g094610' => 'mtr', 'Medtr4g021795' => 'mtr', 'Medtr4g023760' => 'mtr', 'Medtr7g118050' => 'mtr', 'MELO3C005582.2' => 'cme', 'MELO3C005989.2' => 'cme', 'MELO3C006192.2' => 'cme', 'MELO3C009248.2' => 'cme', 'MELO3C019817.2' => 'cme', 'Migut.B01625' => 'egut', 'Migut.B01915' => 'egut', 'Migut.F01721' => 'egut', 'Migut.J00314' => 'egut', 'MSTRG.20742' => 'ama', 'MSTRG.8134' => 'ama', 'Nitab4.5_0000096g0010' => 'nta', 'Nitab4.5_0000202g0030' => 'nta', 'Nitab4.5_0000216g0370' => 'nta', 'Nitab4.5_0000457g0230' => 'nta', 'Nitab4.5_0001702g0170' => 'nta', 'Nitab4.5_0003607g0010' => 'nta', 'Nitab4.5_0004917g0020' => 'nta', 'Nitab4.5_0007059g0010' => 'nta', 'Nitab4.5_0007184g0010' => 'nta', 'Nitab4.5_0007346g0020' => 'nta', 'Nn1g00410' => 'nnu', 'Nn1g01252' => 'nnu', 'Nn2g11168' => 'nnu', 'Nn2g13403' => 'nnu', 'Nn2g13760' => 'nnu', 'Nn4g26380' => 'nnu', 'Oeu000806.2' => 'oeu', 'Oeu005788.1' => 'oeu', 'Oeu006900.3' => 'oeu', 'Oeu007797.1' => 'oeu', 'Oeu011932.1' => 'oeu', 'Oeu022739.1' => 'oeu', 'Oeu037918.1' => 'oeu', 'Oeu055490.2' => 'oeu', 'Os01g0844400' => 'osa', 'Os02g0819100' => 'osa', 'Os03g0804300' => 'osa', 'Os05g0458000' => 'osa', 'Os07g0467800' => 'osa', 'Os12g0602200' => 'osa', 'Peaxi162Scf00013g03444' => 'pax', 'Peaxi162Scf00094g01120' => 'pax', 'Peaxi162Scf00191g01211' => 'pax', 'Peaxi162Scf00238g01110' => 'pax', 'Peaxi162Scf00330g00719' => 'pax', 'Peaxi162Scf00627g00018' => 'pax', 'PGR031G2686' => 'pgr', 'PGR042G0809' => 'pgr', 'PGR142G0193' => 'pgr', 'PGSC0003DMG400011066' => 'stu', 'PGSC0003DMG400012041' => 'stu', 'PGSC0003DMG400013678' => 'stu', 'PGSC0003DMG400023477' => 'stu', 'PGSC0003DMG400025956' => 'stu', 'PGSC0003DMG401019151' => 'stu', 'Phvul.006G116400' => 'pvu', 'Phvul.007G097300' => 'pvu', 'Phvul.010G015000' => 'pvu', 'Phvul.010G083900' => 'pvu', 'Potri.001G117100' => 'ptr', 'Potri.002G147300' => 'ptr', 'Potri.003G115600' => 'ptr', 'Potri.006G087400' => 'ptr', 'Potri.010G226100' => 'ptr', 'Potri.014G069200' => 'ptr', 'Potri.014G104000' => 'ptr', 'Potri.016G100200' => 'ptr', 'Pp3c10_20450' => 'ppa', 'Pp3c1_42400' => 'ppa', 'Pp3c3_24390' => 'ppa', 'Pp3c3_2860' => 'ppa', 'PRCOL_00003193' => 'pco', 'Prupe.2G144500' => 'ppe', 'Prupe.2G195700' => 'ppe', 'Prupe.2G209800' => 'ppe', 'Prupe.5G080000' => 'ppe', 'Prupe.6G257900' => 'ppe', 'Psat3g001160' => 'psa', 'Psat6g181880' => 'psa', 'Psat7g233720' => 'psa', 'PSO063G7587' => 'pso', 'PSO339G2145' => 'pso', 'PSO339G3369' => 'pso', 'PSO478G2747' => 'pso', 'PSO513G0140' => 'pso', 'PSO782G1614' => 'pso', 'PSO782G4889' => 'pso', 'PSO782G5485' => 'pso', 'PSO801G0241' => 'pso', 'QL07p048854' => 'qlo', 'QL08p046745' => 'qlo', 'QL08p052606' => 'qlo', 'QL08p053414' => 'qlo', 'QL08p054868' => 'qlo', 'RcHm_v2.0_Chr1g0350251' => 'rch', 'RcHm_v2.0_Chr1g0360851' => 'rch', 'RcHm_v2.0_Chr1g0362791' => 'rch', 'RcHm_v2.0_Chr3g0466281' => 'rch', 'RcHm_v2.0_Chr7g0201481' => 'rch', 'Rhsim01G0148600' => 'rsi', 'Rhsim05G0194400' => 'rsi', 'Rhsim07G0000700' => 'rsi', 'Rhsim07G0000800' => 'rsi', 'Rhsim07G0027900' => 'rsi', 'Rhsim09G0149500' => 'rsi', 'RhsimUnG0186900' => 'rsi', 'Sabra01G0089900' => 'sbr', 'Sabra02G0114700' => 'sbr', 'Sabra02G0116300' => 'sbr', 'Sabra03G0080100' => 'sbr', 'Sabra08G0024300' => 'sbr', 'Sabra10G0174300' => 'sbr', 'Sabra14G0048900' => 'sbr', 'Sabra14G0076500' => 'sbr', 'SalBow5G2513' => 'sbo', 'Sc01g0002300' => 'sci', 'Sc01g0004450' => 'sci', 'Sc06g0001680' => 'sci', 'Sc23g0003580' => 'sci', 'Sed0000913' => 'sed', 'Sed0001655' => 'sed', 'Sed0007745' => 'sed', 'Sed0010951' => 'sed', 'Sed0017599' => 'sed', 'Sed0021405' => 'sed', 'Sed0022810' => 'sed', 'SEGI_07099' => 'sgi', 'SEGI_11931' => 'sgi', 'SEGI_13187' => 'sgi', 'SEGI_29958' => 'sgi', 'SEGI_36351' => 'sgi', 'SGA_v2.0_scaffold126G33770' => 'sas', 'SGA_v2.0_scaffold153G37003' => 'sas', 'SGA_v2.0_scaffold2G01359' => 'sas', 'SGA_v2.0_scaffold5G03064' => 'sas', 'SGA_v2.0_scaffold95G28903' => 'sas', 'SHI12701' => 'shi', 'SHI26410' => 'shi', 'SHI38997' => 'shi', 'SHI53759' => 'shi', 'SHI53886' => 'shi', 'SHI54714' => 'shi', 'SMO011G0041' => 'smo', 'SMO146G0251' => 'smo', 'SMO160G0004' => 'smo', 'SMO174G0057' => 'smo', 'SMO244G0089' => 'smo', 'SMO296G0011' => 'smo', 'Solyc01g091280.3' => 'sly', 'Solyc05g047610.3' => 'sly', 'Solyc05g047640.3' => 'sly', 'Solyc05g055630.3' => 'sly', 'Solyc10g018160.2' => 'sly', 'Solyc10g084820.2' => 'sly', 'Solyc10g086565.2' => 'sly', 'Sopen01g037030' => 'spe', 'Sopen05g027920' => 'spe', 'Sopen05g034070' => 'spe', 'Sopen10g007260' => 'spe', 'Sopen10g034260' => 'spe', 'Sopen10g035950' => 'spe', 'Sp3g07710' => 'spa', 'Sp4g27420' => 'spa', 'Sp5g02450' => 'spa', 'Sp6g01280' => 'spa', 'Sp6g38480' => 'spa', 'Sp7g20780' => 'spa', 'TAR374G1413' => 'tar', 'TAR623G1777' => 'tar', 'TAR629G2370' => 'tar', 'TAR633G1759' => 'tar', 'TAR636G3387' => 'tar', 'THA.LOC104802447' => 'tha', 'THA.LOC104813916' => 'tha', 'THA.LOC104816423' => 'tha', 'THA.LOC104817246' => 'tha', 'THA.LOC104825895' => 'tha', 'Thecc.01G335200' => 'tca', 'Thecc.01G377400' => 'tca', 'Thecc.03G262200' => 'tca', 'Thecc.05G036800' => 'tca', 'Thecc.10G080500' => 'tca', 'Thecc.10G080800' => 'tca', 'Thhalv10001560m.g' => 'esa', 'Thhalv10006120m.g' => 'esa', 'Thhalv10014375m.g' => 'esa', 'Thhalv10021264m.g' => 'esa', 'Thhalv10028856m.g' => 'esa', 'TPR.G1914' => 'tpr', 'TPR.G4757' => 'tpr', 'TPR.G5595' => 'tpr', 'TWI14G0952' => 'twi', 'TWI14G1307' => 'twi', 'TWI38G2143' => 'twi', 'TWI59G0826' => 'twi', 'TWI77G0527' => 'twi', 'TWI81G0150' => 'twi', 'unitig_21.g21018' => 'ugi', 'unitig_26.g9725' => 'ugi', 'unitig_744.g24653' => 'ugi', 'unitig_749.g13778' => 'ugi', 'unitig_899.g15035' => 'ugi', 'vmacro04296' => 'vma', 'vmacro04852' => 'vma', 'vmacro13404' => 'vma', 'vmacro20169' => 'vma', 'vmacro21014' => 'vma', 'VMungo0331G0237' => 'vmu', 'VMungo0331G0706' => 'vmu', 'VMungo0331G1361' => 'vmu', 'VMungo0331G1489' => 'vmu', 'VMungo0540G1037' => 'vmu', 'VMungo0720G2487' => 'vmu', 'VMungo0720G2721' => 'vmu', 'Zm00001eb086860' => 'zma', 'Zm00001eb104760' => 'zma', 'Zm00001eb148220' => 'zma', 'Zm00001eb259030' => 'zma', 'Zm00001eb289590' => 'zma', 'Zm00001eb420150' => 'zma' ), 'gf_id' => 'HOM05D000968', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000968' ), 'data_identifier' => 'HOM05D000968', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000968', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p31690' => 'bna', 'A03p36040' => 'bna', 'A03p53730' => 'bna', 'A04p01410' => 'bna', 'A05p05420' => 'bna', 'A05p39630' => 'bna', 'A05p39640' => 'bna', 'A09p00970' => 'bna', 'A09p53060' => 'bna', 'A10p31890' => 'bna', 'Aa31LG10G15040' => 'aar', 'Aa31LG1G21090' => 'aar', 'Aa31LG1G26900' => 'aar', 'Aa31LG3G1820' => 'aar', 'Aa31LG5G1100' => 'aar', 'Aa31LG6G4740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2265' => 'aag', 'Actinidia07998' => 'ach', 'Actinidia11266' => 'ach', 'Actinidia12682' => 'ach', 'Actinidia26479' => 'ach', 'Actinidia31406' => 'ach', 'Actinidia32437' => 'ach', 'Actinidia38862' => 'ach', 'Ah.05g174230' => 'amhyb', 'Ah.05g179070' => 'amhyb', 'Ah.05g179090' => 'amhyb', 'Ah.12g059950' => 'amhyb', 'AL3G20480' => 'aly', 'AL4G44520' => 'aly', 'AL5G43110' => 'aly', 'AL6G13890' => 'aly', 'AL6G52620' => 'aly', 'AL7G30830' => 'aly', 'Aqoxy1G00899' => 'aox', 'Aqoxy5G04333' => 'aox', 'Aqoxy7G00641' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3IZ0NN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4EF6AW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W9P8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79GA3M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C43NQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFCU6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G95YVJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCHK29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LU1UG8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX91RN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGB4B1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8DA0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9H7JI' => 'arhy', 'AT3G09320' => 'ath', 'AT3G60800' => 'ath', 'AT4G00840' => 'ath', 'AT4G22750' => 'ath', 'AT5G04270' => 'ath', 'ATR0090G003' => 'atr', 'ATR0559G349' => 'atr', 'ATR0680G261' => 'atr', 'ATR0810G048' => 'atr', 'Atru.chr12.831' => 'acertr', 'Atru.chr5.303' => 'acertr', 'Atru.chr5.748' => 'acertr', 'Atru.chr8.1999' => 'acertr', 'Atru.chr9.1436' => 'acertr', 'AUR62004211' => 'cqu', 'AUR62004548' => 'cqu', 'AUR62013637' => 'cqu', 'AUR62022662' => 'cqu', 'AUR62025777' => 'cqu', 'AUR62042386' => 'cqu', 'BcaB01g02310' => 'bca', 'BcaB01g06062' => 'bca', 'BcaB02g08975' => 'bca', 'BcaB02g08980' => 'bca', 'BcaC01g04228' => 'bca', 'BcaC01g06830' => 'bca', 'BcaC02g10186' => 'bca', 'BcaC02g12214' => 'bca', 'BcaC04g24101' => 'bca', 'BcaC05g29520' => 'bca', 'BcaC05g29661' => 'bca', 'BcaC06g32130' => 'bca', 'BcaC06g32131' => 'bca', 'BcaC07g40601' => 'bca', 'BcaC07g42641' => 'bca', 'BcaNung01038' => 'bca', 'BcaNung01676' => 'bca', 'BcaNung02480' => 'bca', 'BcaNung07376' => 'bca', 'BolC3t16146H' => 'bol', 'BolC3t16637H' => 'bol', 'BolC4t22257H' => 'bol', 'BolC4t24728H' => 'bol', 'BolC5t34517H' => 'bol', 'BolC7t45703H' => 'bol', 'BolC8t51166H' => 'bol', 'BolC9t53038H' => 'bol', 'BolC9t60000H' => 'bol', 'BraA01t01345Z' => 'bra', 'BraA01t01346Z' => 'bra', 'BraA01t01348Z' => 'bra', 'BraA03t12347Z' => 'bra', 'BraA03t12775Z' => 'bra', 'BraA03t14439Z' => 'bra', 'BraA04t15860Z' => 'bra', 'BraA05t19511Z' => 'bra', 'BraA05t22746Z' => 'bra', 'BraA09t35767Z' => 'bra', 'BraA09t40732Z' => 'bra', 'BraA10t45233Z' => 'bra', 'C03p38720' => 'bna', 'C03p43680' => 'bna', 'C04p06350' => 'bna', 'C04p31800' => 'bna', 'C05p58680' => 'bna', 'C07p52110' => 'bna', 'C08p35760' => 'bna', 'C09p01050' => 'bna', 'C09p72600' => 'bna', 'CAN.G106.2' => 'can', 'CAN.G1482.1' => 'can', 'CAN.G324.12' => 'can', 'CAN.G388.20' => 'can', 'CAN.G412.7' => 'can', 'CAN.G694.32' => 'can', 'CAN.G92.12' => 'can', 'CANSAT11G2353' => 'cansat', 'CANSAT21G1398' => 'cansat', 'CANSAT56G2456' => 'cansat', 'CANSAT56G3031' => 'cansat', 'CANSAT56G4539' => 'cansat', 'CARHR083680' => 'chi', 'CARHR171190' => 'chi', 'CARHR209010' => 'chi', 'CARHR229680' => 'chi', 'CARHR249490' => 'chi', 'Carub.0003s0844' => 'cru', 'Carub.0005s2755' => 'cru', 'Carub.0006s0322' => 'cru', 'Carub.0006s3586' => 'cru', 'Carub.0007s1855' => 'cru', 'Ca_07808_v3' => 'car', 'Ca_09535_v3' => 'car', 'Ca_10548_v3' => 'car', 'Ca_19913_v3' => 'car', 'Ca_19916_v3' => 'car', 'Ca_19975_v3' => 'car', 'CBR_g22876' => 'cbr', 'CBR_g22879' => 'cbr', 'CBR_g38491' => 'cbr', 'CBR_g54185' => 'cbr', 'CBR_g54190' => 'cbr', 'Cc02_g11020' => 'ccan', 'Cc02_g23920' => 'ccan', 'Cc02_g39860' => 'ccan', 'Cc02_g39870' => 'ccan', 'Cc03_g06760' => 'ccan', 'Cc06_g02450' => 'ccan', 'Cc09_g09450' => 'ccan', 'CDE02G1959' => 'cde', 'CDE04G0600' => 'cde', 'CDE07G1996' => 'cde', 'CDE07G2078' => 'cde', 'CDE11G0611' => 'cde', 'Cfa001683' => 'cfa', 'Cfa001734' => 'cfa', 'Cfa001737' => 'cfa', 'Cfa003751' => 'cfa', 'Cfa012019' => 'cfa', 'Cfa017353' => 'cfa', 'Cfa017732' => 'cfa', 'Cfa022464' => 'cfa', 'Ciclev10012400m.g' => 'ccl', 'Ciclev10021242m.g' => 'ccl', 'Ciclev10021302m.g' => 'ccl', 'Ciclev10021463m.g' => 'ccl', 'Ciclev10032359m.g' => 'ccl', 'CiPaw.01G081000' => 'cil', 'CiPaw.01G262500' => 'cil', 'CiPaw.01G269800' => 'cil', 'CiPaw.02G168400' => 'cil', 'CiPaw.05G119500' => 'cil', 'CiPaw.11G147300' => 'cil', 'ClCG01G003630' => 'cla', 'ClCG05G000510' => 'cla', 'ClCG05G002300' => 'cla', 'ClCG08G007650' => 'cla', 'ClCG10G021250' => 'cla', 'COL.COLO4_06218' => 'col', 'COL.COLO4_12538' => 'col', 'COL.COLO4_14775' => 'col', 'COL.COLO4_23875' => 'col', 'Cpa.g.sc141.16' => 'cpa', 'Cpa.g.sc169.16' => 'cpa', 'Cpa.g.sc244.4' => 'cpa', 'Cpa.g.sc244.5' => 'cpa', 'Cpa.g.sc29.87' => 'cpa', 'Cpa.g.sc53.115' => 'cpa', 'Cre03.g207502' => 'cre', 'Cre06.g277000' => 'cre', 'Cre09.g394050' => 'cre', 'CsaV3_3G007680' => 'csa', 'CsaV3_3G009710' => 'csa', 'CsaV3_3G034790' => 'csa', 'CsaV3_5G003750' => 'csa', 'CsaV3_6G036620' => 'csa', 'CSS0002288' => 'camsi', 'CSS0011250' => 'camsi', 'CSS0021619' => 'camsi', 'CSS0046701' => 'camsi', 'DCAR_006420' => 'dca', 'DCAR_006865' => 'dca', 'DCAR_008558' => 'dca', 'DCAR_028754' => 'dca', 'DCAR_028755' => 'dca', 'Dinv31218' => 'din', 'Dinv32371' => 'din', 'Dinv34250' => 'din', 'Dinv37156' => 'din', 'Dinv43704' => 'din', 'Duzib093G1811' => 'dzi', 'Duzib106G1622' => 'dzi', 'Duzib114G0504' => 'dzi', 'Duzib128G0338' => 'dzi', 'Duzib128G1577' => 'dzi', 'Duzib133G0104' => 'dzi', 'Duzib133G1080' => 'dzi', 'Duzib138G0324' => 'dzi', 'Duzib138G0394' => 'dzi', 'Duzib205G0122' => 'dzi', 'Duzib268G1020' => 'dzi', 'Duzib268G1359' => 'dzi', 'ECA232G3929' => 'eca', 'ECA236G2210' => 'eca', 'ECA236G2287' => 'eca', 'ECA240G4568' => 'eca', 'ECA247G0894' => 'eca', 'EL10Ac1g00200' => 'bvu', 'EL10Ac1g00886' => 'bvu', 'EL10As1g23091' => 'bvu', 'EL10As1g23092' => 'bvu', 'Eucgr.A01284' => 'egr', 'Eucgr.A01285' => 'egr', 'Eucgr.D02456' => 'egr', 'Eucgr.E00018' => 'egr', 'Eucgr.E01439' => 'egr', 'Eucgr.G02859' => 'egr', 'FAN01G0168' => 'fan', 'FAN01G0453' => 'fan', 'FAN01G2761' => 'fan', 'FAN02G1239' => 'fan', 'FAN03G0645' => 'fan', 'FAN03G2707' => 'fan', 'FAN03G2978' => 'fan', 'FAN04G0227' => 'fan', 'FAN06G0091' => 'fan', 'FAN06G1418' => 'fan', 'FAN06G1512' => 'fan', 'FAN06G1986' => 'fan', 'FAN06G2905' => 'fan', 'FAN06G4325' => 'fan', 'FAN08G0033' => 'fan', 'FAN09G0642' => 'fan', 'FAN10G1763' => 'fan', 'FAN10G2026' => 'fan', 'FAN10G2513' => 'fan', 'FAN10G3402' => 'fan', 'FAN10G3564' => 'fan', 'FAN10G3987' => 'fan', 'FAN13G1490' => 'fan', 'FAN14G5857' => 'fan', 'FAN18G1188' => 'fan', 'FvH4_5g00750' => 'fve', 'FvH4_6g13410' => 'fve', 'FvH4_7g11740' => 'fve', 'FvH4_7g17410' => 'fve', 'FvH4_7g18860' => 'fve', 'Glyma.01G099100' => 'gma', 'Glyma.01G142300' => 'gma', 'Glyma.03G025500' => 'gma', 'Glyma.03G069700' => 'gma', 'Glyma.03G260000' => 'gma', 'Glyma.09G269800' => 'gma', 'Glyma.10G208700' => 'gma', 'Glyma.18G220400' => 'gma', 'Glyma.20G182000' => 'gma', 'Gohir.A01G221726' => 'ghi', 'Gohir.A07G134600' => 'ghi', 'Gohir.A07G146000' => 'ghi', 'Gohir.A08G173900' => 'ghi', 'Gohir.A09G194900' => 'ghi', 'Gohir.A10G204100' => 'ghi', 'Gohir.A11G080600' => 'ghi', 'Gohir.A11G327500' => 'ghi', 'Gohir.A12G101800' => 'ghi', 'Gohir.D01G211200' => 'ghi', 'Gohir.D07G139200' => 'ghi', 'Gohir.D07G152100' => 'ghi', 'Gohir.D08G192600' => 'ghi', 'Gohir.D09G189200' => 'ghi', 'Gohir.D10G212000' => 'ghi', 'Gohir.D11G085200' => 'ghi', 'Gohir.D11G346400' => 'ghi', 'Gohir.D12G104800' => 'ghi', 'Gorai.001G151300' => 'gra', 'Gorai.001G174100' => 'gra', 'Gorai.002G257000' => 'gra', 'Gorai.004G202600' => 'gra', 'Gorai.007G090900' => 'gra', 'Gorai.007G376700' => 'gra', 'Gorai.008G114100' => 'gra', 'Gorai.011G237900' => 'gra', 'GSVIVG01005450001' => 'vvi', 'GSVIVG01016232001' => 'vvi', 'GSVIVG01026157001' => 'vvi', 'GSVIVG01027419001' => 'vvi', 'GSVIVG01027631001' => 'vvi', 'GSVIVG01034143001' => 'vvi', 'HanXRQChr03g0093921' => 'han', 'HanXRQChr04g0120001' => 'han', 'HanXRQChr04g0122561' => 'han', 'HanXRQChr09g0246851' => 'han', 'HanXRQChr10g0293311' => 'han', 'HanXRQChr13g0425231' => 'han', 'HanXRQChr16g0532571' => 'han', 'Haze_09050' => 'cav', 'Haze_15715' => 'cav', 'Haze_15716' => 'cav', 'Haze_16803' => 'cav', 'Haze_16850' => 'cav', 'Hma1.2p1_0301F.1_g118655' => 'hma', 'Hma1.2p1_0309F.1_g120590' => 'hma', 'Hma1.2p1_0936F.1_g238900' => 'hma', 'Hma1.2p1_3552F.1_g336740' => 'hma', 'HPP92_003520' => 'vpl', 'HPP92_006628' => 'vpl', 'HPP92_006645' => 'vpl', 'HPP92_014669' => 'vpl', 'HPP92_015077' => 'vpl', 'Hund16742' => 'sun', 'Hund17022' => 'sun', 'Lalb_Chr02g0152131' => 'lal', 'Lalb_Chr05g0225371' => 'lal', 'Lalb_Chr07g0189841' => 'lal', 'Lalb_Chr07g0192961' => 'lal', 'Lalb_Chr12g0208221' => 'lal', 'Lalb_Chr13g0291211' => 'lal', 'Lalb_Chr13g0291781' => 'lal', 'Lalb_Chr18g0044651' => 'lal', 'Lalb_Chr21g0313731' => 'lal', 'Lj1g0022533' => 'lja', 'Lj2A18T50' => 'lonja', 'Lj2A92G93' => 'lonja', 'Lj3A965T73' => 'lonja', 'Lj3g0000673' => 'lja', 'Lj3g0002666' => 'lja', 'Lj4g0016985' => 'lja', 'Lj5g0003625' => 'lja', 'Lj7A529G36' => 'lonja', 'Lj9A569T49' => 'lonja', 'Lj9A604T63' => 'lonja', 'Lsat_1_v5_gn_3_132060' => 'lsa', 'Lsat_1_v5_gn_4_68941' => 'lsa', 'Lsat_1_v5_gn_5_95580' => 'lsa', 'Lsat_1_v5_gn_7_161' => 'lsa', 'Lsat_1_v5_gn_7_7041' => 'lsa', 'Lsat_1_v5_gn_9_33481' => 'lsa', 'Lsat_1_v5_gn_9_68260' => 'lsa', 'Manes.01G073100' => 'mes', 'Manes.01G266300' => 'mes', 'Manes.02G033300' => 'mes', 'Manes.05G017900' => 'mes', 'Manes.05G046100' => 'mes', 'Manes.08G080900' => 'mes', 'Manes.10G049400' => 'mes', 'Mapoly0009s0186' => 'mpo', 'Mapoly0036s0118' => 'mpo', 'Mapoly0101s0046' => 'mpo', 'MBI04_g30218_MAGBIO' => 'mbi', 'MBI04_g35564_MAGBIO' => 'mbi', 'MBI12_g34011_MAGBIO' => 'mbi', 'MBI14_g04655_MAGBIO' => 'mbi', 'MCO07G653' => 'mco', 'MCO10G173' => 'mco', 'MD01G1087100' => 'mdo', 'MD01G1104200' => 'mdo', 'MD02G1205100' => 'mdo', 'MD04G1079200' => 'mdo', 'MD04G1131400' => 'mdo', 'MD07G1121600' => 'mdo', 'MD07G1157300' => 'mdo', 'MD07G1171000' => 'mdo', 'MD12G1144500' => 'mdo', 'Medtr1g094610' => 'mtr', 'Medtr4g021795' => 'mtr', 'Medtr4g023760' => 'mtr', 'Medtr7g118050' => 'mtr', 'MELO3C005582.2' => 'cme', 'MELO3C005989.2' => 'cme', 'MELO3C006192.2' => 'cme', 'MELO3C009248.2' => 'cme', 'MELO3C019817.2' => 'cme', 'Migut.B01625' => 'egut', 'Migut.B01915' => 'egut', 'Migut.F01721' => 'egut', 'Migut.J00314' => 'egut', 'MSTRG.20742' => 'ama', 'MSTRG.8134' => 'ama', 'Nitab4.5_0000096g0010' => 'nta', 'Nitab4.5_0000202g0030' => 'nta', 'Nitab4.5_0000216g0370' => 'nta', 'Nitab4.5_0000457g0230' => 'nta', 'Nitab4.5_0001702g0170' => 'nta', 'Nitab4.5_0003607g0010' => 'nta', 'Nitab4.5_0004917g0020' => 'nta', 'Nitab4.5_0007059g0010' => 'nta', 'Nitab4.5_0007184g0010' => 'nta', 'Nitab4.5_0007346g0020' => 'nta', 'Nn1g00410' => 'nnu', 'Nn1g01252' => 'nnu', 'Nn2g11168' => 'nnu', 'Nn2g13403' => 'nnu', 'Nn2g13760' => 'nnu', 'Nn4g26380' => 'nnu', 'Oeu000806.2' => 'oeu', 'Oeu005788.1' => 'oeu', 'Oeu006900.3' => 'oeu', 'Oeu007797.1' => 'oeu', 'Oeu011932.1' => 'oeu', 'Oeu022739.1' => 'oeu', 'Oeu037918.1' => 'oeu', 'Oeu055490.2' => 'oeu', 'Os01g0844400' => 'osa', 'Os02g0819100' => 'osa', 'Os03g0804300' => 'osa', 'Os05g0458000' => 'osa', 'Os07g0467800' => 'osa', 'Os12g0602200' => 'osa', 'Peaxi162Scf00013g03444' => 'pax', 'Peaxi162Scf00094g01120' => 'pax', 'Peaxi162Scf00191g01211' => 'pax', 'Peaxi162Scf00238g01110' => 'pax', 'Peaxi162Scf00330g00719' => 'pax', 'Peaxi162Scf00627g00018' => 'pax', 'PGR031G2686' => 'pgr', 'PGR042G0809' => 'pgr', 'PGR142G0193' => 'pgr', 'PGSC0003DMG400011066' => 'stu', 'PGSC0003DMG400012041' => 'stu', 'PGSC0003DMG400013678' => 'stu', 'PGSC0003DMG400023477' => 'stu', 'PGSC0003DMG400025956' => 'stu', 'PGSC0003DMG401019151' => 'stu', 'Phvul.006G116400' => 'pvu', 'Phvul.007G097300' => 'pvu', 'Phvul.010G015000' => 'pvu', 'Phvul.010G083900' => 'pvu', 'Potri.001G117100' => 'ptr', 'Potri.002G147300' => 'ptr', 'Potri.003G115600' => 'ptr', 'Potri.006G087400' => 'ptr', 'Potri.010G226100' => 'ptr', 'Potri.014G069200' => 'ptr', 'Potri.014G104000' => 'ptr', 'Potri.016G100200' => 'ptr', 'Pp3c10_20450' => 'ppa', 'Pp3c1_42400' => 'ppa', 'Pp3c3_24390' => 'ppa', 'Pp3c3_2860' => 'ppa', 'PRCOL_00003193' => 'pco', 'Prupe.2G144500' => 'ppe', 'Prupe.2G195700' => 'ppe', 'Prupe.2G209800' => 'ppe', 'Prupe.5G080000' => 'ppe', 'Prupe.6G257900' => 'ppe', 'Psat3g001160' => 'psa', 'Psat6g181880' => 'psa', 'Psat7g233720' => 'psa', 'PSO063G7587' => 'pso', 'PSO339G2145' => 'pso', 'PSO339G3369' => 'pso', 'PSO478G2747' => 'pso', 'PSO513G0140' => 'pso', 'PSO782G1614' => 'pso', 'PSO782G4889' => 'pso', 'PSO782G5485' => 'pso', 'PSO801G0241' => 'pso', 'QL07p048854' => 'qlo', 'QL08p046745' => 'qlo', 'QL08p052606' => 'qlo', 'QL08p053414' => 'qlo', 'QL08p054868' => 'qlo', 'RcHm_v2.0_Chr1g0350251' => 'rch', 'RcHm_v2.0_Chr1g0360851' => 'rch', 'RcHm_v2.0_Chr1g0362791' => 'rch', 'RcHm_v2.0_Chr3g0466281' => 'rch', 'RcHm_v2.0_Chr7g0201481' => 'rch', 'Rhsim01G0148600' => 'rsi', 'Rhsim05G0194400' => 'rsi', 'Rhsim07G0000700' => 'rsi', 'Rhsim07G0000800' => 'rsi', 'Rhsim07G0027900' => 'rsi', 'Rhsim09G0149500' => 'rsi', 'RhsimUnG0186900' => 'rsi', 'Sabra01G0089900' => 'sbr', 'Sabra02G0114700' => 'sbr', 'Sabra02G0116300' => 'sbr', 'Sabra03G0080100' => 'sbr', 'Sabra08G0024300' => 'sbr', 'Sabra10G0174300' => 'sbr', 'Sabra14G0048900' => 'sbr', 'Sabra14G0076500' => 'sbr', 'SalBow5G2513' => 'sbo', 'Sc01g0002300' => 'sci', 'Sc01g0004450' => 'sci', 'Sc06g0001680' => 'sci', 'Sc23g0003580' => 'sci', 'Sed0000913' => 'sed', 'Sed0001655' => 'sed', 'Sed0007745' => 'sed', 'Sed0010951' => 'sed', 'Sed0017599' => 'sed', 'Sed0021405' => 'sed', 'Sed0022810' => 'sed', 'SEGI_07099' => 'sgi', 'SEGI_11931' => 'sgi', 'SEGI_13187' => 'sgi', 'SEGI_29958' => 'sgi', 'SEGI_36351' => 'sgi', 'SGA_v2.0_scaffold126G33770' => 'sas', 'SGA_v2.0_scaffold153G37003' => 'sas', 'SGA_v2.0_scaffold2G01359' => 'sas', 'SGA_v2.0_scaffold5G03064' => 'sas', 'SGA_v2.0_scaffold95G28903' => 'sas', 'SHI12701' => 'shi', 'SHI26410' => 'shi', 'SHI38997' => 'shi', 'SHI53759' => 'shi', 'SHI53886' => 'shi', 'SHI54714' => 'shi', 'SMO011G0041' => 'smo', 'SMO146G0251' => 'smo', 'SMO160G0004' => 'smo', 'SMO174G0057' => 'smo', 'SMO244G0089' => 'smo', 'SMO296G0011' => 'smo', 'Solyc01g091280.3' => 'sly', 'Solyc05g047610.3' => 'sly', 'Solyc05g047640.3' => 'sly', 'Solyc05g055630.3' => 'sly', 'Solyc10g018160.2' => 'sly', 'Solyc10g084820.2' => 'sly', 'Solyc10g086565.2' => 'sly', 'Sopen01g037030' => 'spe', 'Sopen05g027920' => 'spe', 'Sopen05g034070' => 'spe', 'Sopen10g007260' => 'spe', 'Sopen10g034260' => 'spe', 'Sopen10g035950' => 'spe', 'Sp3g07710' => 'spa', 'Sp4g27420' => 'spa', 'Sp5g02450' => 'spa', 'Sp6g01280' => 'spa', 'Sp6g38480' => 'spa', 'Sp7g20780' => 'spa', 'TAR374G1413' => 'tar', 'TAR623G1777' => 'tar', 'TAR629G2370' => 'tar', 'TAR633G1759' => 'tar', 'TAR636G3387' => 'tar', 'THA.LOC104802447' => 'tha', 'THA.LOC104813916' => 'tha', 'THA.LOC104816423' => 'tha', 'THA.LOC104817246' => 'tha', 'THA.LOC104825895' => 'tha', 'Thecc.01G335200' => 'tca', 'Thecc.01G377400' => 'tca', 'Thecc.03G262200' => 'tca', 'Thecc.05G036800' => 'tca', 'Thecc.10G080500' => 'tca', 'Thecc.10G080800' => 'tca', 'Thhalv10001560m.g' => 'esa', 'Thhalv10006120m.g' => 'esa', 'Thhalv10014375m.g' => 'esa', 'Thhalv10021264m.g' => 'esa', 'Thhalv10028856m.g' => 'esa', 'TPR.G1914' => 'tpr', 'TPR.G4757' => 'tpr', 'TPR.G5595' => 'tpr', 'TWI14G0952' => 'twi', 'TWI14G1307' => 'twi', 'TWI38G2143' => 'twi', 'TWI59G0826' => 'twi', 'TWI77G0527' => 'twi', 'TWI81G0150' => 'twi', 'unitig_21.g21018' => 'ugi', 'unitig_26.g9725' => 'ugi', 'unitig_744.g24653' => 'ugi', 'unitig_749.g13778' => 'ugi', 'unitig_899.g15035' => 'ugi', 'vmacro04296' => 'vma', 'vmacro04852' => 'vma', 'vmacro13404' => 'vma', 'vmacro20169' => 'vma', 'vmacro21014' => 'vma', 'VMungo0331G0237' => 'vmu', 'VMungo0331G0706' => 'vmu', 'VMungo0331G1361' => 'vmu', 'VMungo0331G1489' => 'vmu', 'VMungo0540G1037' => 'vmu', 'VMungo0720G2487' => 'vmu', 'VMungo0720G2721' => 'vmu', 'Zm00001eb086860' => 'zma', 'Zm00001eb104760' => 'zma', 'Zm00001eb148220' => 'zma', 'Zm00001eb259030' => 'zma', 'Zm00001eb289590' => 'zma', 'Zm00001eb420150' => 'zma' ) $gf_id = 'HOM05D000968' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000968' ) $data_identifier = 'HOM05D000968' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 19, 'bol' => (int) 9, 'bra' => (int) 12, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 5, 'ccan' => (int) 7, 'cde' => (int) 5, 'cfa' => (int) 8, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 4, 'dca' => (int) 5, 'din' => (int) 5, 'dzi' => (int) 12, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 25, 'fve' => (int) 5, 'gma' => (int) 9, 'ghi' => (int) 18, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 7, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 5, 'sun' => (int) 2, 'lal' => (int) 9, 'lja' => (int) 5, 'lonja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 9, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 2, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 3, 'stu' => (int) 6, 'pvu' => (int) 4, 'ptr' => (int) 8, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 3, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 1, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 5, 'sas' => (int) 5, 'shi' => (int) 6, 'smo' => (int) 6, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 3, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420150' $species_info = array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ) $local_species = 'chi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000968', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p31690' => 'bna', 'A03p36040' => 'bna', 'A03p53730' => 'bna', 'A04p01410' => 'bna', 'A05p05420' => 'bna', 'A05p39630' => 'bna', 'A05p39640' => 'bna', 'A09p00970' => 'bna', 'A09p53060' => 'bna', 'A10p31890' => 'bna', 'Aa31LG10G15040' => 'aar', 'Aa31LG1G21090' => 'aar', 'Aa31LG1G26900' => 'aar', 'Aa31LG3G1820' => 'aar', 'Aa31LG5G1100' => 'aar', 'Aa31LG6G4740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2265' => 'aag', 'Actinidia07998' => 'ach', 'Actinidia11266' => 'ach', 'Actinidia12682' => 'ach', 'Actinidia26479' => 'ach', 'Actinidia31406' => 'ach', 'Actinidia32437' => 'ach', 'Actinidia38862' => 'ach', 'Ah.05g174230' => 'amhyb', 'Ah.05g179070' => 'amhyb', 'Ah.05g179090' => 'amhyb', 'Ah.12g059950' => 'amhyb', 'AL3G20480' => 'aly', 'AL4G44520' => 'aly', 'AL5G43110' => 'aly', 'AL6G13890' => 'aly', 'AL6G52620' => 'aly', 'AL7G30830' => 'aly', 'Aqoxy1G00899' => 'aox', 'Aqoxy5G04333' => 'aox', 'Aqoxy7G00641' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3IZ0NN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4EF6AW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W9P8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79GA3M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C43NQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFCU6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G95YVJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCHK29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LU1UG8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX91RN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGB4B1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8DA0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9H7JI' => 'arhy', 'AT3G09320' => 'ath', 'AT3G60800' => 'ath', 'AT4G00840' => 'ath', 'AT4G22750' => 'ath', 'AT5G04270' => 'ath', 'ATR0090G003' => 'atr', 'ATR0559G349' => 'atr', 'ATR0680G261' => 'atr', 'ATR0810G048' => 'atr', 'Atru.chr12.831' => 'acertr', 'Atru.chr5.303' => 'acertr', 'Atru.chr5.748' => 'acertr', 'Atru.chr8.1999' => 'acertr', 'Atru.chr9.1436' => 'acertr', 'AUR62004211' => 'cqu', 'AUR62004548' => 'cqu', 'AUR62013637' => 'cqu', 'AUR62022662' => 'cqu', 'AUR62025777' => 'cqu', 'AUR62042386' => 'cqu', 'BcaB01g02310' => 'bca', 'BcaB01g06062' => 'bca', 'BcaB02g08975' => 'bca', 'BcaB02g08980' => 'bca', 'BcaC01g04228' => 'bca', 'BcaC01g06830' => 'bca', 'BcaC02g10186' => 'bca', 'BcaC02g12214' => 'bca', 'BcaC04g24101' => 'bca', 'BcaC05g29520' => 'bca', 'BcaC05g29661' => 'bca', 'BcaC06g32130' => 'bca', 'BcaC06g32131' => 'bca', 'BcaC07g40601' => 'bca', 'BcaC07g42641' => 'bca', 'BcaNung01038' => 'bca', 'BcaNung01676' => 'bca', 'BcaNung02480' => 'bca', 'BcaNung07376' => 'bca', 'BolC3t16146H' => 'bol', 'BolC3t16637H' => 'bol', 'BolC4t22257H' => 'bol', 'BolC4t24728H' => 'bol', 'BolC5t34517H' => 'bol', 'BolC7t45703H' => 'bol', 'BolC8t51166H' => 'bol', 'BolC9t53038H' => 'bol', 'BolC9t60000H' => 'bol', 'BraA01t01345Z' => 'bra', 'BraA01t01346Z' => 'bra', 'BraA01t01348Z' => 'bra', 'BraA03t12347Z' => 'bra', 'BraA03t12775Z' => 'bra', 'BraA03t14439Z' => 'bra', 'BraA04t15860Z' => 'bra', 'BraA05t19511Z' => 'bra', 'BraA05t22746Z' => 'bra', 'BraA09t35767Z' => 'bra', 'BraA09t40732Z' => 'bra', 'BraA10t45233Z' => 'bra', 'C03p38720' => 'bna', 'C03p43680' => 'bna', 'C04p06350' => 'bna', 'C04p31800' => 'bna', 'C05p58680' => 'bna', 'C07p52110' => 'bna', 'C08p35760' => 'bna', 'C09p01050' => 'bna', 'C09p72600' => 'bna', 'CAN.G106.2' => 'can', 'CAN.G1482.1' => 'can', 'CAN.G324.12' => 'can', 'CAN.G388.20' => 'can', 'CAN.G412.7' => 'can', 'CAN.G694.32' => 'can', 'CAN.G92.12' => 'can', 'CANSAT11G2353' => 'cansat', 'CANSAT21G1398' => 'cansat', 'CANSAT56G2456' => 'cansat', 'CANSAT56G3031' => 'cansat', 'CANSAT56G4539' => 'cansat', 'CARHR083680' => 'chi', 'CARHR171190' => 'chi', 'CARHR209010' => 'chi', 'CARHR229680' => 'chi', 'CARHR249490' => 'chi', 'Carub.0003s0844' => 'cru', 'Carub.0005s2755' => 'cru', 'Carub.0006s0322' => 'cru', 'Carub.0006s3586' => 'cru', 'Carub.0007s1855' => 'cru', 'Ca_07808_v3' => 'car', 'Ca_09535_v3' => 'car', 'Ca_10548_v3' => 'car', 'Ca_19913_v3' => 'car', 'Ca_19916_v3' => 'car', 'Ca_19975_v3' => 'car', 'CBR_g22876' => 'cbr', 'CBR_g22879' => 'cbr', 'CBR_g38491' => 'cbr', 'CBR_g54185' => 'cbr', 'CBR_g54190' => 'cbr', 'Cc02_g11020' => 'ccan', 'Cc02_g23920' => 'ccan', 'Cc02_g39860' => 'ccan', 'Cc02_g39870' => 'ccan', 'Cc03_g06760' => 'ccan', 'Cc06_g02450' => 'ccan', 'Cc09_g09450' => 'ccan', 'CDE02G1959' => 'cde', 'CDE04G0600' => 'cde', 'CDE07G1996' => 'cde', 'CDE07G2078' => 'cde', 'CDE11G0611' => 'cde', 'Cfa001683' => 'cfa', 'Cfa001734' => 'cfa', 'Cfa001737' => 'cfa', 'Cfa003751' => 'cfa', 'Cfa012019' => 'cfa', 'Cfa017353' => 'cfa', 'Cfa017732' => 'cfa', 'Cfa022464' => 'cfa', 'Ciclev10012400m.g' => 'ccl', 'Ciclev10021242m.g' => 'ccl', 'Ciclev10021302m.g' => 'ccl', 'Ciclev10021463m.g' => 'ccl', 'Ciclev10032359m.g' => 'ccl', 'CiPaw.01G081000' => 'cil', 'CiPaw.01G262500' => 'cil', 'CiPaw.01G269800' => 'cil', 'CiPaw.02G168400' => 'cil', 'CiPaw.05G119500' => 'cil', 'CiPaw.11G147300' => 'cil', 'ClCG01G003630' => 'cla', 'ClCG05G000510' => 'cla', 'ClCG05G002300' => 'cla', 'ClCG08G007650' => 'cla', 'ClCG10G021250' => 'cla', 'COL.COLO4_06218' => 'col', 'COL.COLO4_12538' => 'col', 'COL.COLO4_14775' => 'col', 'COL.COLO4_23875' => 'col', 'Cpa.g.sc141.16' => 'cpa', 'Cpa.g.sc169.16' => 'cpa', 'Cpa.g.sc244.4' => 'cpa', 'Cpa.g.sc244.5' => 'cpa', 'Cpa.g.sc29.87' => 'cpa', 'Cpa.g.sc53.115' => 'cpa', 'Cre03.g207502' => 'cre', 'Cre06.g277000' => 'cre', 'Cre09.g394050' => 'cre', 'CsaV3_3G007680' => 'csa', 'CsaV3_3G009710' => 'csa', 'CsaV3_3G034790' => 'csa', 'CsaV3_5G003750' => 'csa', 'CsaV3_6G036620' => 'csa', 'CSS0002288' => 'camsi', 'CSS0011250' => 'camsi', 'CSS0021619' => 'camsi', 'CSS0046701' => 'camsi', 'DCAR_006420' => 'dca', 'DCAR_006865' => 'dca', 'DCAR_008558' => 'dca', 'DCAR_028754' => 'dca', 'DCAR_028755' => 'dca', 'Dinv31218' => 'din', 'Dinv32371' => 'din', 'Dinv34250' => 'din', 'Dinv37156' => 'din', 'Dinv43704' => 'din', 'Duzib093G1811' => 'dzi', 'Duzib106G1622' => 'dzi', 'Duzib114G0504' => 'dzi', 'Duzib128G0338' => 'dzi', 'Duzib128G1577' => 'dzi', 'Duzib133G0104' => 'dzi', 'Duzib133G1080' => 'dzi', 'Duzib138G0324' => 'dzi', 'Duzib138G0394' => 'dzi', 'Duzib205G0122' => 'dzi', 'Duzib268G1020' => 'dzi', 'Duzib268G1359' => 'dzi', 'ECA232G3929' => 'eca', 'ECA236G2210' => 'eca', 'ECA236G2287' => 'eca', 'ECA240G4568' => 'eca', 'ECA247G0894' => 'eca', 'EL10Ac1g00200' => 'bvu', 'EL10Ac1g00886' => 'bvu', 'EL10As1g23091' => 'bvu', 'EL10As1g23092' => 'bvu', 'Eucgr.A01284' => 'egr', 'Eucgr.A01285' => 'egr', 'Eucgr.D02456' => 'egr', 'Eucgr.E00018' => 'egr', 'Eucgr.E01439' => 'egr', 'Eucgr.G02859' => 'egr', 'FAN01G0168' => 'fan', 'FAN01G0453' => 'fan', 'FAN01G2761' => 'fan', 'FAN02G1239' => 'fan', 'FAN03G0645' => 'fan', 'FAN03G2707' => 'fan', 'FAN03G2978' => 'fan', 'FAN04G0227' => 'fan', 'FAN06G0091' => 'fan', 'FAN06G1418' => 'fan', 'FAN06G1512' => 'fan', 'FAN06G1986' => 'fan', 'FAN06G2905' => 'fan', 'FAN06G4325' => 'fan', 'FAN08G0033' => 'fan', 'FAN09G0642' => 'fan', 'FAN10G1763' => 'fan', 'FAN10G2026' => 'fan', 'FAN10G2513' => 'fan', 'FAN10G3402' => 'fan', 'FAN10G3564' => 'fan', 'FAN10G3987' => 'fan', 'FAN13G1490' => 'fan', 'FAN14G5857' => 'fan', 'FAN18G1188' => 'fan', 'FvH4_5g00750' => 'fve', 'FvH4_6g13410' => 'fve', 'FvH4_7g11740' => 'fve', 'FvH4_7g17410' => 'fve', 'FvH4_7g18860' => 'fve', 'Glyma.01G099100' => 'gma', 'Glyma.01G142300' => 'gma', 'Glyma.03G025500' => 'gma', 'Glyma.03G069700' => 'gma', 'Glyma.03G260000' => 'gma', 'Glyma.09G269800' => 'gma', 'Glyma.10G208700' => 'gma', 'Glyma.18G220400' => 'gma', 'Glyma.20G182000' => 'gma', 'Gohir.A01G221726' => 'ghi', 'Gohir.A07G134600' => 'ghi', 'Gohir.A07G146000' => 'ghi', 'Gohir.A08G173900' => 'ghi', 'Gohir.A09G194900' => 'ghi', 'Gohir.A10G204100' => 'ghi', 'Gohir.A11G080600' => 'ghi', 'Gohir.A11G327500' => 'ghi', 'Gohir.A12G101800' => 'ghi', 'Gohir.D01G211200' => 'ghi', 'Gohir.D07G139200' => 'ghi', 'Gohir.D07G152100' => 'ghi', 'Gohir.D08G192600' => 'ghi', 'Gohir.D09G189200' => 'ghi', 'Gohir.D10G212000' => 'ghi', 'Gohir.D11G085200' => 'ghi', 'Gohir.D11G346400' => 'ghi', 'Gohir.D12G104800' => 'ghi', 'Gorai.001G151300' => 'gra', 'Gorai.001G174100' => 'gra', 'Gorai.002G257000' => 'gra', 'Gorai.004G202600' => 'gra', 'Gorai.007G090900' => 'gra', 'Gorai.007G376700' => 'gra', 'Gorai.008G114100' => 'gra', 'Gorai.011G237900' => 'gra', 'GSVIVG01005450001' => 'vvi', 'GSVIVG01016232001' => 'vvi', 'GSVIVG01026157001' => 'vvi', 'GSVIVG01027419001' => 'vvi', 'GSVIVG01027631001' => 'vvi', 'GSVIVG01034143001' => 'vvi', 'HanXRQChr03g0093921' => 'han', 'HanXRQChr04g0120001' => 'han', 'HanXRQChr04g0122561' => 'han', 'HanXRQChr09g0246851' => 'han', 'HanXRQChr10g0293311' => 'han', 'HanXRQChr13g0425231' => 'han', 'HanXRQChr16g0532571' => 'han', 'Haze_09050' => 'cav', 'Haze_15715' => 'cav', 'Haze_15716' => 'cav', 'Haze_16803' => 'cav', 'Haze_16850' => 'cav', 'Hma1.2p1_0301F.1_g118655' => 'hma', 'Hma1.2p1_0309F.1_g120590' => 'hma', 'Hma1.2p1_0936F.1_g238900' => 'hma', 'Hma1.2p1_3552F.1_g336740' => 'hma', 'HPP92_003520' => 'vpl', 'HPP92_006628' => 'vpl', 'HPP92_006645' => 'vpl', 'HPP92_014669' => 'vpl', 'HPP92_015077' => 'vpl', 'Hund16742' => 'sun', 'Hund17022' => 'sun', 'Lalb_Chr02g0152131' => 'lal', 'Lalb_Chr05g0225371' => 'lal', 'Lalb_Chr07g0189841' => 'lal', 'Lalb_Chr07g0192961' => 'lal', 'Lalb_Chr12g0208221' => 'lal', 'Lalb_Chr13g0291211' => 'lal', 'Lalb_Chr13g0291781' => 'lal', 'Lalb_Chr18g0044651' => 'lal', 'Lalb_Chr21g0313731' => 'lal', 'Lj1g0022533' => 'lja', 'Lj2A18T50' => 'lonja', 'Lj2A92G93' => 'lonja', 'Lj3A965T73' => 'lonja', 'Lj3g0000673' => 'lja', 'Lj3g0002666' => 'lja', 'Lj4g0016985' => 'lja', 'Lj5g0003625' => 'lja', 'Lj7A529G36' => 'lonja', 'Lj9A569T49' => 'lonja', 'Lj9A604T63' => 'lonja', 'Lsat_1_v5_gn_3_132060' => 'lsa', 'Lsat_1_v5_gn_4_68941' => 'lsa', 'Lsat_1_v5_gn_5_95580' => 'lsa', 'Lsat_1_v5_gn_7_161' => 'lsa', 'Lsat_1_v5_gn_7_7041' => 'lsa', 'Lsat_1_v5_gn_9_33481' => 'lsa', 'Lsat_1_v5_gn_9_68260' => 'lsa', 'Manes.01G073100' => 'mes', 'Manes.01G266300' => 'mes', 'Manes.02G033300' => 'mes', 'Manes.05G017900' => 'mes', 'Manes.05G046100' => 'mes', 'Manes.08G080900' => 'mes', 'Manes.10G049400' => 'mes', 'Mapoly0009s0186' => 'mpo', 'Mapoly0036s0118' => 'mpo', 'Mapoly0101s0046' => 'mpo', 'MBI04_g30218_MAGBIO' => 'mbi', 'MBI04_g35564_MAGBIO' => 'mbi', 'MBI12_g34011_MAGBIO' => 'mbi', 'MBI14_g04655_MAGBIO' => 'mbi', 'MCO07G653' => 'mco', 'MCO10G173' => 'mco', 'MD01G1087100' => 'mdo', 'MD01G1104200' => 'mdo', 'MD02G1205100' => 'mdo', 'MD04G1079200' => 'mdo', 'MD04G1131400' => 'mdo', 'MD07G1121600' => 'mdo', 'MD07G1157300' => 'mdo', 'MD07G1171000' => 'mdo', 'MD12G1144500' => 'mdo', 'Medtr1g094610' => 'mtr', 'Medtr4g021795' => 'mtr', 'Medtr4g023760' => 'mtr', 'Medtr7g118050' => 'mtr', 'MELO3C005582.2' => 'cme', 'MELO3C005989.2' => 'cme', 'MELO3C006192.2' => 'cme', 'MELO3C009248.2' => 'cme', 'MELO3C019817.2' => 'cme', 'Migut.B01625' => 'egut', 'Migut.B01915' => 'egut', 'Migut.F01721' => 'egut', 'Migut.J00314' => 'egut', 'MSTRG.20742' => 'ama', 'MSTRG.8134' => 'ama', 'Nitab4.5_0000096g0010' => 'nta', 'Nitab4.5_0000202g0030' => 'nta', 'Nitab4.5_0000216g0370' => 'nta', 'Nitab4.5_0000457g0230' => 'nta', 'Nitab4.5_0001702g0170' => 'nta', 'Nitab4.5_0003607g0010' => 'nta', 'Nitab4.5_0004917g0020' => 'nta', 'Nitab4.5_0007059g0010' => 'nta', 'Nitab4.5_0007184g0010' => 'nta', 'Nitab4.5_0007346g0020' => 'nta', 'Nn1g00410' => 'nnu', 'Nn1g01252' => 'nnu', 'Nn2g11168' => 'nnu', 'Nn2g13403' => 'nnu', 'Nn2g13760' => 'nnu', 'Nn4g26380' => 'nnu', 'Oeu000806.2' => 'oeu', 'Oeu005788.1' => 'oeu', 'Oeu006900.3' => 'oeu', 'Oeu007797.1' => 'oeu', 'Oeu011932.1' => 'oeu', 'Oeu022739.1' => 'oeu', 'Oeu037918.1' => 'oeu', 'Oeu055490.2' => 'oeu', 'Os01g0844400' => 'osa', 'Os02g0819100' => 'osa', 'Os03g0804300' => 'osa', 'Os05g0458000' => 'osa', 'Os07g0467800' => 'osa', 'Os12g0602200' => 'osa', 'Peaxi162Scf00013g03444' => 'pax', 'Peaxi162Scf00094g01120' => 'pax', 'Peaxi162Scf00191g01211' => 'pax', 'Peaxi162Scf00238g01110' => 'pax', 'Peaxi162Scf00330g00719' => 'pax', 'Peaxi162Scf00627g00018' => 'pax', 'PGR031G2686' => 'pgr', 'PGR042G0809' => 'pgr', 'PGR142G0193' => 'pgr', 'PGSC0003DMG400011066' => 'stu', 'PGSC0003DMG400012041' => 'stu', 'PGSC0003DMG400013678' => 'stu', 'PGSC0003DMG400023477' => 'stu', 'PGSC0003DMG400025956' => 'stu', 'PGSC0003DMG401019151' => 'stu', 'Phvul.006G116400' => 'pvu', 'Phvul.007G097300' => 'pvu', 'Phvul.010G015000' => 'pvu', 'Phvul.010G083900' => 'pvu', 'Potri.001G117100' => 'ptr', 'Potri.002G147300' => 'ptr', 'Potri.003G115600' => 'ptr', 'Potri.006G087400' => 'ptr', 'Potri.010G226100' => 'ptr', 'Potri.014G069200' => 'ptr', 'Potri.014G104000' => 'ptr', 'Potri.016G100200' => 'ptr', 'Pp3c10_20450' => 'ppa', 'Pp3c1_42400' => 'ppa', 'Pp3c3_24390' => 'ppa', 'Pp3c3_2860' => 'ppa', 'PRCOL_00003193' => 'pco', 'Prupe.2G144500' => 'ppe', 'Prupe.2G195700' => 'ppe', 'Prupe.2G209800' => 'ppe', 'Prupe.5G080000' => 'ppe', 'Prupe.6G257900' => 'ppe', 'Psat3g001160' => 'psa', 'Psat6g181880' => 'psa', 'Psat7g233720' => 'psa', 'PSO063G7587' => 'pso', 'PSO339G2145' => 'pso', 'PSO339G3369' => 'pso', 'PSO478G2747' => 'pso', 'PSO513G0140' => 'pso', 'PSO782G1614' => 'pso', 'PSO782G4889' => 'pso', 'PSO782G5485' => 'pso', 'PSO801G0241' => 'pso', 'QL07p048854' => 'qlo', 'QL08p046745' => 'qlo', 'QL08p052606' => 'qlo', 'QL08p053414' => 'qlo', 'QL08p054868' => 'qlo', 'RcHm_v2.0_Chr1g0350251' => 'rch', 'RcHm_v2.0_Chr1g0360851' => 'rch', 'RcHm_v2.0_Chr1g0362791' => 'rch', 'RcHm_v2.0_Chr3g0466281' => 'rch', 'RcHm_v2.0_Chr7g0201481' => 'rch', 'Rhsim01G0148600' => 'rsi', 'Rhsim05G0194400' => 'rsi', 'Rhsim07G0000700' => 'rsi', 'Rhsim07G0000800' => 'rsi', 'Rhsim07G0027900' => 'rsi', 'Rhsim09G0149500' => 'rsi', 'RhsimUnG0186900' => 'rsi', 'Sabra01G0089900' => 'sbr', 'Sabra02G0114700' => 'sbr', 'Sabra02G0116300' => 'sbr', 'Sabra03G0080100' => 'sbr', 'Sabra08G0024300' => 'sbr', 'Sabra10G0174300' => 'sbr', 'Sabra14G0048900' => 'sbr', 'Sabra14G0076500' => 'sbr', 'SalBow5G2513' => 'sbo', 'Sc01g0002300' => 'sci', 'Sc01g0004450' => 'sci', 'Sc06g0001680' => 'sci', 'Sc23g0003580' => 'sci', 'Sed0000913' => 'sed', 'Sed0001655' => 'sed', 'Sed0007745' => 'sed', 'Sed0010951' => 'sed', 'Sed0017599' => 'sed', 'Sed0021405' => 'sed', 'Sed0022810' => 'sed', 'SEGI_07099' => 'sgi', 'SEGI_11931' => 'sgi', 'SEGI_13187' => 'sgi', 'SEGI_29958' => 'sgi', 'SEGI_36351' => 'sgi', 'SGA_v2.0_scaffold126G33770' => 'sas', 'SGA_v2.0_scaffold153G37003' => 'sas', 'SGA_v2.0_scaffold2G01359' => 'sas', 'SGA_v2.0_scaffold5G03064' => 'sas', 'SGA_v2.0_scaffold95G28903' => 'sas', 'SHI12701' => 'shi', 'SHI26410' => 'shi', 'SHI38997' => 'shi', 'SHI53759' => 'shi', 'SHI53886' => 'shi', 'SHI54714' => 'shi', 'SMO011G0041' => 'smo', 'SMO146G0251' => 'smo', 'SMO160G0004' => 'smo', 'SMO174G0057' => 'smo', 'SMO244G0089' => 'smo', 'SMO296G0011' => 'smo', 'Solyc01g091280.3' => 'sly', 'Solyc05g047610.3' => 'sly', 'Solyc05g047640.3' => 'sly', 'Solyc05g055630.3' => 'sly', 'Solyc10g018160.2' => 'sly', 'Solyc10g084820.2' => 'sly', 'Solyc10g086565.2' => 'sly', 'Sopen01g037030' => 'spe', 'Sopen05g027920' => 'spe', 'Sopen05g034070' => 'spe', 'Sopen10g007260' => 'spe', 'Sopen10g034260' => 'spe', 'Sopen10g035950' => 'spe', 'Sp3g07710' => 'spa', 'Sp4g27420' => 'spa', 'Sp5g02450' => 'spa', 'Sp6g01280' => 'spa', 'Sp6g38480' => 'spa', 'Sp7g20780' => 'spa', 'TAR374G1413' => 'tar', 'TAR623G1777' => 'tar', 'TAR629G2370' => 'tar', 'TAR633G1759' => 'tar', 'TAR636G3387' => 'tar', 'THA.LOC104802447' => 'tha', 'THA.LOC104813916' => 'tha', 'THA.LOC104816423' => 'tha', 'THA.LOC104817246' => 'tha', 'THA.LOC104825895' => 'tha', 'Thecc.01G335200' => 'tca', 'Thecc.01G377400' => 'tca', 'Thecc.03G262200' => 'tca', 'Thecc.05G036800' => 'tca', 'Thecc.10G080500' => 'tca', 'Thecc.10G080800' => 'tca', 'Thhalv10001560m.g' => 'esa', 'Thhalv10006120m.g' => 'esa', 'Thhalv10014375m.g' => 'esa', 'Thhalv10021264m.g' => 'esa', 'Thhalv10028856m.g' => 'esa', 'TPR.G1914' => 'tpr', 'TPR.G4757' => 'tpr', 'TPR.G5595' => 'tpr', 'TWI14G0952' => 'twi', 'TWI14G1307' => 'twi', 'TWI38G2143' => 'twi', 'TWI59G0826' => 'twi', 'TWI77G0527' => 'twi', 'TWI81G0150' => 'twi', 'unitig_21.g21018' => 'ugi', 'unitig_26.g9725' => 'ugi', 'unitig_744.g24653' => 'ugi', 'unitig_749.g13778' => 'ugi', 'unitig_899.g15035' => 'ugi', 'vmacro04296' => 'vma', 'vmacro04852' => 'vma', 'vmacro13404' => 'vma', 'vmacro20169' => 'vma', 'vmacro21014' => 'vma', 'VMungo0331G0237' => 'vmu', 'VMungo0331G0706' => 'vmu', 'VMungo0331G1361' => 'vmu', 'VMungo0331G1489' => 'vmu', 'VMungo0540G1037' => 'vmu', 'VMungo0720G2487' => 'vmu', 'VMungo0720G2721' => 'vmu', 'Zm00001eb086860' => 'zma', 'Zm00001eb104760' => 'zma', 'Zm00001eb148220' => 'zma', 'Zm00001eb259030' => 'zma', 'Zm00001eb289590' => 'zma', 'Zm00001eb420150' => 'zma' ), 'gf_id' => 'HOM05D000968', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000968' ), 'data_identifier' => 'HOM05D000968', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000968', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p31690' => 'bna', 'A03p36040' => 'bna', 'A03p53730' => 'bna', 'A04p01410' => 'bna', 'A05p05420' => 'bna', 'A05p39630' => 'bna', 'A05p39640' => 'bna', 'A09p00970' => 'bna', 'A09p53060' => 'bna', 'A10p31890' => 'bna', 'Aa31LG10G15040' => 'aar', 'Aa31LG1G21090' => 'aar', 'Aa31LG1G26900' => 'aar', 'Aa31LG3G1820' => 'aar', 'Aa31LG5G1100' => 'aar', 'Aa31LG6G4740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2265' => 'aag', 'Actinidia07998' => 'ach', 'Actinidia11266' => 'ach', 'Actinidia12682' => 'ach', 'Actinidia26479' => 'ach', 'Actinidia31406' => 'ach', 'Actinidia32437' => 'ach', 'Actinidia38862' => 'ach', 'Ah.05g174230' => 'amhyb', 'Ah.05g179070' => 'amhyb', 'Ah.05g179090' => 'amhyb', 'Ah.12g059950' => 'amhyb', 'AL3G20480' => 'aly', 'AL4G44520' => 'aly', 'AL5G43110' => 'aly', 'AL6G13890' => 'aly', 'AL6G52620' => 'aly', 'AL7G30830' => 'aly', 'Aqoxy1G00899' => 'aox', 'Aqoxy5G04333' => 'aox', 'Aqoxy7G00641' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3IZ0NN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4EF6AW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W9P8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79GA3M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C43NQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFCU6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G95YVJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCHK29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LU1UG8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX91RN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGB4B1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8DA0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9H7JI' => 'arhy', 'AT3G09320' => 'ath', 'AT3G60800' => 'ath', 'AT4G00840' => 'ath', 'AT4G22750' => 'ath', 'AT5G04270' => 'ath', 'ATR0090G003' => 'atr', 'ATR0559G349' => 'atr', 'ATR0680G261' => 'atr', 'ATR0810G048' => 'atr', 'Atru.chr12.831' => 'acertr', 'Atru.chr5.303' => 'acertr', 'Atru.chr5.748' => 'acertr', 'Atru.chr8.1999' => 'acertr', 'Atru.chr9.1436' => 'acertr', 'AUR62004211' => 'cqu', 'AUR62004548' => 'cqu', 'AUR62013637' => 'cqu', 'AUR62022662' => 'cqu', 'AUR62025777' => 'cqu', 'AUR62042386' => 'cqu', 'BcaB01g02310' => 'bca', 'BcaB01g06062' => 'bca', 'BcaB02g08975' => 'bca', 'BcaB02g08980' => 'bca', 'BcaC01g04228' => 'bca', 'BcaC01g06830' => 'bca', 'BcaC02g10186' => 'bca', 'BcaC02g12214' => 'bca', 'BcaC04g24101' => 'bca', 'BcaC05g29520' => 'bca', 'BcaC05g29661' => 'bca', 'BcaC06g32130' => 'bca', 'BcaC06g32131' => 'bca', 'BcaC07g40601' => 'bca', 'BcaC07g42641' => 'bca', 'BcaNung01038' => 'bca', 'BcaNung01676' => 'bca', 'BcaNung02480' => 'bca', 'BcaNung07376' => 'bca', 'BolC3t16146H' => 'bol', 'BolC3t16637H' => 'bol', 'BolC4t22257H' => 'bol', 'BolC4t24728H' => 'bol', 'BolC5t34517H' => 'bol', 'BolC7t45703H' => 'bol', 'BolC8t51166H' => 'bol', 'BolC9t53038H' => 'bol', 'BolC9t60000H' => 'bol', 'BraA01t01345Z' => 'bra', 'BraA01t01346Z' => 'bra', 'BraA01t01348Z' => 'bra', 'BraA03t12347Z' => 'bra', 'BraA03t12775Z' => 'bra', 'BraA03t14439Z' => 'bra', 'BraA04t15860Z' => 'bra', 'BraA05t19511Z' => 'bra', 'BraA05t22746Z' => 'bra', 'BraA09t35767Z' => 'bra', 'BraA09t40732Z' => 'bra', 'BraA10t45233Z' => 'bra', 'C03p38720' => 'bna', 'C03p43680' => 'bna', 'C04p06350' => 'bna', 'C04p31800' => 'bna', 'C05p58680' => 'bna', 'C07p52110' => 'bna', 'C08p35760' => 'bna', 'C09p01050' => 'bna', 'C09p72600' => 'bna', 'CAN.G106.2' => 'can', 'CAN.G1482.1' => 'can', 'CAN.G324.12' => 'can', 'CAN.G388.20' => 'can', 'CAN.G412.7' => 'can', 'CAN.G694.32' => 'can', 'CAN.G92.12' => 'can', 'CANSAT11G2353' => 'cansat', 'CANSAT21G1398' => 'cansat', 'CANSAT56G2456' => 'cansat', 'CANSAT56G3031' => 'cansat', 'CANSAT56G4539' => 'cansat', 'CARHR083680' => 'chi', 'CARHR171190' => 'chi', 'CARHR209010' => 'chi', 'CARHR229680' => 'chi', 'CARHR249490' => 'chi', 'Carub.0003s0844' => 'cru', 'Carub.0005s2755' => 'cru', 'Carub.0006s0322' => 'cru', 'Carub.0006s3586' => 'cru', 'Carub.0007s1855' => 'cru', 'Ca_07808_v3' => 'car', 'Ca_09535_v3' => 'car', 'Ca_10548_v3' => 'car', 'Ca_19913_v3' => 'car', 'Ca_19916_v3' => 'car', 'Ca_19975_v3' => 'car', 'CBR_g22876' => 'cbr', 'CBR_g22879' => 'cbr', 'CBR_g38491' => 'cbr', 'CBR_g54185' => 'cbr', 'CBR_g54190' => 'cbr', 'Cc02_g11020' => 'ccan', 'Cc02_g23920' => 'ccan', 'Cc02_g39860' => 'ccan', 'Cc02_g39870' => 'ccan', 'Cc03_g06760' => 'ccan', 'Cc06_g02450' => 'ccan', 'Cc09_g09450' => 'ccan', 'CDE02G1959' => 'cde', 'CDE04G0600' => 'cde', 'CDE07G1996' => 'cde', 'CDE07G2078' => 'cde', 'CDE11G0611' => 'cde', 'Cfa001683' => 'cfa', 'Cfa001734' => 'cfa', 'Cfa001737' => 'cfa', 'Cfa003751' => 'cfa', 'Cfa012019' => 'cfa', 'Cfa017353' => 'cfa', 'Cfa017732' => 'cfa', 'Cfa022464' => 'cfa', 'Ciclev10012400m.g' => 'ccl', 'Ciclev10021242m.g' => 'ccl', 'Ciclev10021302m.g' => 'ccl', 'Ciclev10021463m.g' => 'ccl', 'Ciclev10032359m.g' => 'ccl', 'CiPaw.01G081000' => 'cil', 'CiPaw.01G262500' => 'cil', 'CiPaw.01G269800' => 'cil', 'CiPaw.02G168400' => 'cil', 'CiPaw.05G119500' => 'cil', 'CiPaw.11G147300' => 'cil', 'ClCG01G003630' => 'cla', 'ClCG05G000510' => 'cla', 'ClCG05G002300' => 'cla', 'ClCG08G007650' => 'cla', 'ClCG10G021250' => 'cla', 'COL.COLO4_06218' => 'col', 'COL.COLO4_12538' => 'col', 'COL.COLO4_14775' => 'col', 'COL.COLO4_23875' => 'col', 'Cpa.g.sc141.16' => 'cpa', 'Cpa.g.sc169.16' => 'cpa', 'Cpa.g.sc244.4' => 'cpa', 'Cpa.g.sc244.5' => 'cpa', 'Cpa.g.sc29.87' => 'cpa', 'Cpa.g.sc53.115' => 'cpa', 'Cre03.g207502' => 'cre', 'Cre06.g277000' => 'cre', 'Cre09.g394050' => 'cre', 'CsaV3_3G007680' => 'csa', 'CsaV3_3G009710' => 'csa', 'CsaV3_3G034790' => 'csa', 'CsaV3_5G003750' => 'csa', 'CsaV3_6G036620' => 'csa', 'CSS0002288' => 'camsi', 'CSS0011250' => 'camsi', 'CSS0021619' => 'camsi', 'CSS0046701' => 'camsi', 'DCAR_006420' => 'dca', 'DCAR_006865' => 'dca', 'DCAR_008558' => 'dca', 'DCAR_028754' => 'dca', 'DCAR_028755' => 'dca', 'Dinv31218' => 'din', 'Dinv32371' => 'din', 'Dinv34250' => 'din', 'Dinv37156' => 'din', 'Dinv43704' => 'din', 'Duzib093G1811' => 'dzi', 'Duzib106G1622' => 'dzi', 'Duzib114G0504' => 'dzi', 'Duzib128G0338' => 'dzi', 'Duzib128G1577' => 'dzi', 'Duzib133G0104' => 'dzi', 'Duzib133G1080' => 'dzi', 'Duzib138G0324' => 'dzi', 'Duzib138G0394' => 'dzi', 'Duzib205G0122' => 'dzi', 'Duzib268G1020' => 'dzi', 'Duzib268G1359' => 'dzi', 'ECA232G3929' => 'eca', 'ECA236G2210' => 'eca', 'ECA236G2287' => 'eca', 'ECA240G4568' => 'eca', 'ECA247G0894' => 'eca', 'EL10Ac1g00200' => 'bvu', 'EL10Ac1g00886' => 'bvu', 'EL10As1g23091' => 'bvu', 'EL10As1g23092' => 'bvu', 'Eucgr.A01284' => 'egr', 'Eucgr.A01285' => 'egr', 'Eucgr.D02456' => 'egr', 'Eucgr.E00018' => 'egr', 'Eucgr.E01439' => 'egr', 'Eucgr.G02859' => 'egr', 'FAN01G0168' => 'fan', 'FAN01G0453' => 'fan', 'FAN01G2761' => 'fan', 'FAN02G1239' => 'fan', 'FAN03G0645' => 'fan', 'FAN03G2707' => 'fan', 'FAN03G2978' => 'fan', 'FAN04G0227' => 'fan', 'FAN06G0091' => 'fan', 'FAN06G1418' => 'fan', 'FAN06G1512' => 'fan', 'FAN06G1986' => 'fan', 'FAN06G2905' => 'fan', 'FAN06G4325' => 'fan', 'FAN08G0033' => 'fan', 'FAN09G0642' => 'fan', 'FAN10G1763' => 'fan', 'FAN10G2026' => 'fan', 'FAN10G2513' => 'fan', 'FAN10G3402' => 'fan', 'FAN10G3564' => 'fan', 'FAN10G3987' => 'fan', 'FAN13G1490' => 'fan', 'FAN14G5857' => 'fan', 'FAN18G1188' => 'fan', 'FvH4_5g00750' => 'fve', 'FvH4_6g13410' => 'fve', 'FvH4_7g11740' => 'fve', 'FvH4_7g17410' => 'fve', 'FvH4_7g18860' => 'fve', 'Glyma.01G099100' => 'gma', 'Glyma.01G142300' => 'gma', 'Glyma.03G025500' => 'gma', 'Glyma.03G069700' => 'gma', 'Glyma.03G260000' => 'gma', 'Glyma.09G269800' => 'gma', 'Glyma.10G208700' => 'gma', 'Glyma.18G220400' => 'gma', 'Glyma.20G182000' => 'gma', 'Gohir.A01G221726' => 'ghi', 'Gohir.A07G134600' => 'ghi', 'Gohir.A07G146000' => 'ghi', 'Gohir.A08G173900' => 'ghi', 'Gohir.A09G194900' => 'ghi', 'Gohir.A10G204100' => 'ghi', 'Gohir.A11G080600' => 'ghi', 'Gohir.A11G327500' => 'ghi', 'Gohir.A12G101800' => 'ghi', 'Gohir.D01G211200' => 'ghi', 'Gohir.D07G139200' => 'ghi', 'Gohir.D07G152100' => 'ghi', 'Gohir.D08G192600' => 'ghi', 'Gohir.D09G189200' => 'ghi', 'Gohir.D10G212000' => 'ghi', 'Gohir.D11G085200' => 'ghi', 'Gohir.D11G346400' => 'ghi', 'Gohir.D12G104800' => 'ghi', 'Gorai.001G151300' => 'gra', 'Gorai.001G174100' => 'gra', 'Gorai.002G257000' => 'gra', 'Gorai.004G202600' => 'gra', 'Gorai.007G090900' => 'gra', 'Gorai.007G376700' => 'gra', 'Gorai.008G114100' => 'gra', 'Gorai.011G237900' => 'gra', 'GSVIVG01005450001' => 'vvi', 'GSVIVG01016232001' => 'vvi', 'GSVIVG01026157001' => 'vvi', 'GSVIVG01027419001' => 'vvi', 'GSVIVG01027631001' => 'vvi', 'GSVIVG01034143001' => 'vvi', 'HanXRQChr03g0093921' => 'han', 'HanXRQChr04g0120001' => 'han', 'HanXRQChr04g0122561' => 'han', 'HanXRQChr09g0246851' => 'han', 'HanXRQChr10g0293311' => 'han', 'HanXRQChr13g0425231' => 'han', 'HanXRQChr16g0532571' => 'han', 'Haze_09050' => 'cav', 'Haze_15715' => 'cav', 'Haze_15716' => 'cav', 'Haze_16803' => 'cav', 'Haze_16850' => 'cav', 'Hma1.2p1_0301F.1_g118655' => 'hma', 'Hma1.2p1_0309F.1_g120590' => 'hma', 'Hma1.2p1_0936F.1_g238900' => 'hma', 'Hma1.2p1_3552F.1_g336740' => 'hma', 'HPP92_003520' => 'vpl', 'HPP92_006628' => 'vpl', 'HPP92_006645' => 'vpl', 'HPP92_014669' => 'vpl', 'HPP92_015077' => 'vpl', 'Hund16742' => 'sun', 'Hund17022' => 'sun', 'Lalb_Chr02g0152131' => 'lal', 'Lalb_Chr05g0225371' => 'lal', 'Lalb_Chr07g0189841' => 'lal', 'Lalb_Chr07g0192961' => 'lal', 'Lalb_Chr12g0208221' => 'lal', 'Lalb_Chr13g0291211' => 'lal', 'Lalb_Chr13g0291781' => 'lal', 'Lalb_Chr18g0044651' => 'lal', 'Lalb_Chr21g0313731' => 'lal', 'Lj1g0022533' => 'lja', 'Lj2A18T50' => 'lonja', 'Lj2A92G93' => 'lonja', 'Lj3A965T73' => 'lonja', 'Lj3g0000673' => 'lja', 'Lj3g0002666' => 'lja', 'Lj4g0016985' => 'lja', 'Lj5g0003625' => 'lja', 'Lj7A529G36' => 'lonja', 'Lj9A569T49' => 'lonja', 'Lj9A604T63' => 'lonja', 'Lsat_1_v5_gn_3_132060' => 'lsa', 'Lsat_1_v5_gn_4_68941' => 'lsa', 'Lsat_1_v5_gn_5_95580' => 'lsa', 'Lsat_1_v5_gn_7_161' => 'lsa', 'Lsat_1_v5_gn_7_7041' => 'lsa', 'Lsat_1_v5_gn_9_33481' => 'lsa', 'Lsat_1_v5_gn_9_68260' => 'lsa', 'Manes.01G073100' => 'mes', 'Manes.01G266300' => 'mes', 'Manes.02G033300' => 'mes', 'Manes.05G017900' => 'mes', 'Manes.05G046100' => 'mes', 'Manes.08G080900' => 'mes', 'Manes.10G049400' => 'mes', 'Mapoly0009s0186' => 'mpo', 'Mapoly0036s0118' => 'mpo', 'Mapoly0101s0046' => 'mpo', 'MBI04_g30218_MAGBIO' => 'mbi', 'MBI04_g35564_MAGBIO' => 'mbi', 'MBI12_g34011_MAGBIO' => 'mbi', 'MBI14_g04655_MAGBIO' => 'mbi', 'MCO07G653' => 'mco', 'MCO10G173' => 'mco', 'MD01G1087100' => 'mdo', 'MD01G1104200' => 'mdo', 'MD02G1205100' => 'mdo', 'MD04G1079200' => 'mdo', 'MD04G1131400' => 'mdo', 'MD07G1121600' => 'mdo', 'MD07G1157300' => 'mdo', 'MD07G1171000' => 'mdo', 'MD12G1144500' => 'mdo', 'Medtr1g094610' => 'mtr', 'Medtr4g021795' => 'mtr', 'Medtr4g023760' => 'mtr', 'Medtr7g118050' => 'mtr', 'MELO3C005582.2' => 'cme', 'MELO3C005989.2' => 'cme', 'MELO3C006192.2' => 'cme', 'MELO3C009248.2' => 'cme', 'MELO3C019817.2' => 'cme', 'Migut.B01625' => 'egut', 'Migut.B01915' => 'egut', 'Migut.F01721' => 'egut', 'Migut.J00314' => 'egut', 'MSTRG.20742' => 'ama', 'MSTRG.8134' => 'ama', 'Nitab4.5_0000096g0010' => 'nta', 'Nitab4.5_0000202g0030' => 'nta', 'Nitab4.5_0000216g0370' => 'nta', 'Nitab4.5_0000457g0230' => 'nta', 'Nitab4.5_0001702g0170' => 'nta', 'Nitab4.5_0003607g0010' => 'nta', 'Nitab4.5_0004917g0020' => 'nta', 'Nitab4.5_0007059g0010' => 'nta', 'Nitab4.5_0007184g0010' => 'nta', 'Nitab4.5_0007346g0020' => 'nta', 'Nn1g00410' => 'nnu', 'Nn1g01252' => 'nnu', 'Nn2g11168' => 'nnu', 'Nn2g13403' => 'nnu', 'Nn2g13760' => 'nnu', 'Nn4g26380' => 'nnu', 'Oeu000806.2' => 'oeu', 'Oeu005788.1' => 'oeu', 'Oeu006900.3' => 'oeu', 'Oeu007797.1' => 'oeu', 'Oeu011932.1' => 'oeu', 'Oeu022739.1' => 'oeu', 'Oeu037918.1' => 'oeu', 'Oeu055490.2' => 'oeu', 'Os01g0844400' => 'osa', 'Os02g0819100' => 'osa', 'Os03g0804300' => 'osa', 'Os05g0458000' => 'osa', 'Os07g0467800' => 'osa', 'Os12g0602200' => 'osa', 'Peaxi162Scf00013g03444' => 'pax', 'Peaxi162Scf00094g01120' => 'pax', 'Peaxi162Scf00191g01211' => 'pax', 'Peaxi162Scf00238g01110' => 'pax', 'Peaxi162Scf00330g00719' => 'pax', 'Peaxi162Scf00627g00018' => 'pax', 'PGR031G2686' => 'pgr', 'PGR042G0809' => 'pgr', 'PGR142G0193' => 'pgr', 'PGSC0003DMG400011066' => 'stu', 'PGSC0003DMG400012041' => 'stu', 'PGSC0003DMG400013678' => 'stu', 'PGSC0003DMG400023477' => 'stu', 'PGSC0003DMG400025956' => 'stu', 'PGSC0003DMG401019151' => 'stu', 'Phvul.006G116400' => 'pvu', 'Phvul.007G097300' => 'pvu', 'Phvul.010G015000' => 'pvu', 'Phvul.010G083900' => 'pvu', 'Potri.001G117100' => 'ptr', 'Potri.002G147300' => 'ptr', 'Potri.003G115600' => 'ptr', 'Potri.006G087400' => 'ptr', 'Potri.010G226100' => 'ptr', 'Potri.014G069200' => 'ptr', 'Potri.014G104000' => 'ptr', 'Potri.016G100200' => 'ptr', 'Pp3c10_20450' => 'ppa', 'Pp3c1_42400' => 'ppa', 'Pp3c3_24390' => 'ppa', 'Pp3c3_2860' => 'ppa', 'PRCOL_00003193' => 'pco', 'Prupe.2G144500' => 'ppe', 'Prupe.2G195700' => 'ppe', 'Prupe.2G209800' => 'ppe', 'Prupe.5G080000' => 'ppe', 'Prupe.6G257900' => 'ppe', 'Psat3g001160' => 'psa', 'Psat6g181880' => 'psa', 'Psat7g233720' => 'psa', 'PSO063G7587' => 'pso', 'PSO339G2145' => 'pso', 'PSO339G3369' => 'pso', 'PSO478G2747' => 'pso', 'PSO513G0140' => 'pso', 'PSO782G1614' => 'pso', 'PSO782G4889' => 'pso', 'PSO782G5485' => 'pso', 'PSO801G0241' => 'pso', 'QL07p048854' => 'qlo', 'QL08p046745' => 'qlo', 'QL08p052606' => 'qlo', 'QL08p053414' => 'qlo', 'QL08p054868' => 'qlo', 'RcHm_v2.0_Chr1g0350251' => 'rch', 'RcHm_v2.0_Chr1g0360851' => 'rch', 'RcHm_v2.0_Chr1g0362791' => 'rch', 'RcHm_v2.0_Chr3g0466281' => 'rch', 'RcHm_v2.0_Chr7g0201481' => 'rch', 'Rhsim01G0148600' => 'rsi', 'Rhsim05G0194400' => 'rsi', 'Rhsim07G0000700' => 'rsi', 'Rhsim07G0000800' => 'rsi', 'Rhsim07G0027900' => 'rsi', 'Rhsim09G0149500' => 'rsi', 'RhsimUnG0186900' => 'rsi', 'Sabra01G0089900' => 'sbr', 'Sabra02G0114700' => 'sbr', 'Sabra02G0116300' => 'sbr', 'Sabra03G0080100' => 'sbr', 'Sabra08G0024300' => 'sbr', 'Sabra10G0174300' => 'sbr', 'Sabra14G0048900' => 'sbr', 'Sabra14G0076500' => 'sbr', 'SalBow5G2513' => 'sbo', 'Sc01g0002300' => 'sci', 'Sc01g0004450' => 'sci', 'Sc06g0001680' => 'sci', 'Sc23g0003580' => 'sci', 'Sed0000913' => 'sed', 'Sed0001655' => 'sed', 'Sed0007745' => 'sed', 'Sed0010951' => 'sed', 'Sed0017599' => 'sed', 'Sed0021405' => 'sed', 'Sed0022810' => 'sed', 'SEGI_07099' => 'sgi', 'SEGI_11931' => 'sgi', 'SEGI_13187' => 'sgi', 'SEGI_29958' => 'sgi', 'SEGI_36351' => 'sgi', 'SGA_v2.0_scaffold126G33770' => 'sas', 'SGA_v2.0_scaffold153G37003' => 'sas', 'SGA_v2.0_scaffold2G01359' => 'sas', 'SGA_v2.0_scaffold5G03064' => 'sas', 'SGA_v2.0_scaffold95G28903' => 'sas', 'SHI12701' => 'shi', 'SHI26410' => 'shi', 'SHI38997' => 'shi', 'SHI53759' => 'shi', 'SHI53886' => 'shi', 'SHI54714' => 'shi', 'SMO011G0041' => 'smo', 'SMO146G0251' => 'smo', 'SMO160G0004' => 'smo', 'SMO174G0057' => 'smo', 'SMO244G0089' => 'smo', 'SMO296G0011' => 'smo', 'Solyc01g091280.3' => 'sly', 'Solyc05g047610.3' => 'sly', 'Solyc05g047640.3' => 'sly', 'Solyc05g055630.3' => 'sly', 'Solyc10g018160.2' => 'sly', 'Solyc10g084820.2' => 'sly', 'Solyc10g086565.2' => 'sly', 'Sopen01g037030' => 'spe', 'Sopen05g027920' => 'spe', 'Sopen05g034070' => 'spe', 'Sopen10g007260' => 'spe', 'Sopen10g034260' => 'spe', 'Sopen10g035950' => 'spe', 'Sp3g07710' => 'spa', 'Sp4g27420' => 'spa', 'Sp5g02450' => 'spa', 'Sp6g01280' => 'spa', 'Sp6g38480' => 'spa', 'Sp7g20780' => 'spa', 'TAR374G1413' => 'tar', 'TAR623G1777' => 'tar', 'TAR629G2370' => 'tar', 'TAR633G1759' => 'tar', 'TAR636G3387' => 'tar', 'THA.LOC104802447' => 'tha', 'THA.LOC104813916' => 'tha', 'THA.LOC104816423' => 'tha', 'THA.LOC104817246' => 'tha', 'THA.LOC104825895' => 'tha', 'Thecc.01G335200' => 'tca', 'Thecc.01G377400' => 'tca', 'Thecc.03G262200' => 'tca', 'Thecc.05G036800' => 'tca', 'Thecc.10G080500' => 'tca', 'Thecc.10G080800' => 'tca', 'Thhalv10001560m.g' => 'esa', 'Thhalv10006120m.g' => 'esa', 'Thhalv10014375m.g' => 'esa', 'Thhalv10021264m.g' => 'esa', 'Thhalv10028856m.g' => 'esa', 'TPR.G1914' => 'tpr', 'TPR.G4757' => 'tpr', 'TPR.G5595' => 'tpr', 'TWI14G0952' => 'twi', 'TWI14G1307' => 'twi', 'TWI38G2143' => 'twi', 'TWI59G0826' => 'twi', 'TWI77G0527' => 'twi', 'TWI81G0150' => 'twi', 'unitig_21.g21018' => 'ugi', 'unitig_26.g9725' => 'ugi', 'unitig_744.g24653' => 'ugi', 'unitig_749.g13778' => 'ugi', 'unitig_899.g15035' => 'ugi', 'vmacro04296' => 'vma', 'vmacro04852' => 'vma', 'vmacro13404' => 'vma', 'vmacro20169' => 'vma', 'vmacro21014' => 'vma', 'VMungo0331G0237' => 'vmu', 'VMungo0331G0706' => 'vmu', 'VMungo0331G1361' => 'vmu', 'VMungo0331G1489' => 'vmu', 'VMungo0540G1037' => 'vmu', 'VMungo0720G2487' => 'vmu', 'VMungo0720G2721' => 'vmu', 'Zm00001eb086860' => 'zma', 'Zm00001eb104760' => 'zma', 'Zm00001eb148220' => 'zma', 'Zm00001eb259030' => 'zma', 'Zm00001eb289590' => 'zma', 'Zm00001eb420150' => 'zma' ) $gf_id = 'HOM05D000968' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000968' ) $data_identifier = 'HOM05D000968' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 19, 'bol' => (int) 9, 'bra' => (int) 12, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 5, 'ccan' => (int) 7, 'cde' => (int) 5, 'cfa' => (int) 8, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 4, 'dca' => (int) 5, 'din' => (int) 5, 'dzi' => (int) 12, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 25, 'fve' => (int) 5, 'gma' => (int) 9, 'ghi' => (int) 18, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 7, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 5, 'sun' => (int) 2, 'lal' => (int) 9, 'lja' => (int) 5, 'lonja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 9, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 2, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 3, 'stu' => (int) 6, 'pvu' => (int) 4, 'ptr' => (int) 8, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 3, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 1, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 5, 'sas' => (int) 5, 'shi' => (int) 6, 'smo' => (int) 6, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 3, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420150' $species_info = array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ) $local_species = 'chi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000968', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p31690' => 'bna', 'A03p36040' => 'bna', 'A03p53730' => 'bna', 'A04p01410' => 'bna', 'A05p05420' => 'bna', 'A05p39630' => 'bna', 'A05p39640' => 'bna', 'A09p00970' => 'bna', 'A09p53060' => 'bna', 'A10p31890' => 'bna', 'Aa31LG10G15040' => 'aar', 'Aa31LG1G21090' => 'aar', 'Aa31LG1G26900' => 'aar', 'Aa31LG3G1820' => 'aar', 'Aa31LG5G1100' => 'aar', 'Aa31LG6G4740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2265' => 'aag', 'Actinidia07998' => 'ach', 'Actinidia11266' => 'ach', 'Actinidia12682' => 'ach', 'Actinidia26479' => 'ach', 'Actinidia31406' => 'ach', 'Actinidia32437' => 'ach', 'Actinidia38862' => 'ach', 'Ah.05g174230' => 'amhyb', 'Ah.05g179070' => 'amhyb', 'Ah.05g179090' => 'amhyb', 'Ah.12g059950' => 'amhyb', 'AL3G20480' => 'aly', 'AL4G44520' => 'aly', 'AL5G43110' => 'aly', 'AL6G13890' => 'aly', 'AL6G52620' => 'aly', 'AL7G30830' => 'aly', 'Aqoxy1G00899' => 'aox', 'Aqoxy5G04333' => 'aox', 'Aqoxy7G00641' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3IZ0NN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4EF6AW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W9P8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79GA3M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C43NQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFCU6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G95YVJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCHK29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LU1UG8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX91RN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGB4B1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8DA0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9H7JI' => 'arhy', 'AT3G09320' => 'ath', 'AT3G60800' => 'ath', 'AT4G00840' => 'ath', 'AT4G22750' => 'ath', 'AT5G04270' => 'ath', 'ATR0090G003' => 'atr', 'ATR0559G349' => 'atr', 'ATR0680G261' => 'atr', 'ATR0810G048' => 'atr', 'Atru.chr12.831' => 'acertr', 'Atru.chr5.303' => 'acertr', 'Atru.chr5.748' => 'acertr', 'Atru.chr8.1999' => 'acertr', 'Atru.chr9.1436' => 'acertr', 'AUR62004211' => 'cqu', 'AUR62004548' => 'cqu', 'AUR62013637' => 'cqu', 'AUR62022662' => 'cqu', 'AUR62025777' => 'cqu', 'AUR62042386' => 'cqu', 'BcaB01g02310' => 'bca', 'BcaB01g06062' => 'bca', 'BcaB02g08975' => 'bca', 'BcaB02g08980' => 'bca', 'BcaC01g04228' => 'bca', 'BcaC01g06830' => 'bca', 'BcaC02g10186' => 'bca', 'BcaC02g12214' => 'bca', 'BcaC04g24101' => 'bca', 'BcaC05g29520' => 'bca', 'BcaC05g29661' => 'bca', 'BcaC06g32130' => 'bca', 'BcaC06g32131' => 'bca', 'BcaC07g40601' => 'bca', 'BcaC07g42641' => 'bca', 'BcaNung01038' => 'bca', 'BcaNung01676' => 'bca', 'BcaNung02480' => 'bca', 'BcaNung07376' => 'bca', 'BolC3t16146H' => 'bol', 'BolC3t16637H' => 'bol', 'BolC4t22257H' => 'bol', 'BolC4t24728H' => 'bol', 'BolC5t34517H' => 'bol', 'BolC7t45703H' => 'bol', 'BolC8t51166H' => 'bol', 'BolC9t53038H' => 'bol', 'BolC9t60000H' => 'bol', 'BraA01t01345Z' => 'bra', 'BraA01t01346Z' => 'bra', 'BraA01t01348Z' => 'bra', 'BraA03t12347Z' => 'bra', 'BraA03t12775Z' => 'bra', 'BraA03t14439Z' => 'bra', 'BraA04t15860Z' => 'bra', 'BraA05t19511Z' => 'bra', 'BraA05t22746Z' => 'bra', 'BraA09t35767Z' => 'bra', 'BraA09t40732Z' => 'bra', 'BraA10t45233Z' => 'bra', 'C03p38720' => 'bna', 'C03p43680' => 'bna', 'C04p06350' => 'bna', 'C04p31800' => 'bna', 'C05p58680' => 'bna', 'C07p52110' => 'bna', 'C08p35760' => 'bna', 'C09p01050' => 'bna', 'C09p72600' => 'bna', 'CAN.G106.2' => 'can', 'CAN.G1482.1' => 'can', 'CAN.G324.12' => 'can', 'CAN.G388.20' => 'can', 'CAN.G412.7' => 'can', 'CAN.G694.32' => 'can', 'CAN.G92.12' => 'can', 'CANSAT11G2353' => 'cansat', 'CANSAT21G1398' => 'cansat', 'CANSAT56G2456' => 'cansat', 'CANSAT56G3031' => 'cansat', 'CANSAT56G4539' => 'cansat', 'CARHR083680' => 'chi', 'CARHR171190' => 'chi', 'CARHR209010' => 'chi', 'CARHR229680' => 'chi', 'CARHR249490' => 'chi', 'Carub.0003s0844' => 'cru', 'Carub.0005s2755' => 'cru', 'Carub.0006s0322' => 'cru', 'Carub.0006s3586' => 'cru', 'Carub.0007s1855' => 'cru', 'Ca_07808_v3' => 'car', 'Ca_09535_v3' => 'car', 'Ca_10548_v3' => 'car', 'Ca_19913_v3' => 'car', 'Ca_19916_v3' => 'car', 'Ca_19975_v3' => 'car', 'CBR_g22876' => 'cbr', 'CBR_g22879' => 'cbr', 'CBR_g38491' => 'cbr', 'CBR_g54185' => 'cbr', 'CBR_g54190' => 'cbr', 'Cc02_g11020' => 'ccan', 'Cc02_g23920' => 'ccan', 'Cc02_g39860' => 'ccan', 'Cc02_g39870' => 'ccan', 'Cc03_g06760' => 'ccan', 'Cc06_g02450' => 'ccan', 'Cc09_g09450' => 'ccan', 'CDE02G1959' => 'cde', 'CDE04G0600' => 'cde', 'CDE07G1996' => 'cde', 'CDE07G2078' => 'cde', 'CDE11G0611' => 'cde', 'Cfa001683' => 'cfa', 'Cfa001734' => 'cfa', 'Cfa001737' => 'cfa', 'Cfa003751' => 'cfa', 'Cfa012019' => 'cfa', 'Cfa017353' => 'cfa', 'Cfa017732' => 'cfa', 'Cfa022464' => 'cfa', 'Ciclev10012400m.g' => 'ccl', 'Ciclev10021242m.g' => 'ccl', 'Ciclev10021302m.g' => 'ccl', 'Ciclev10021463m.g' => 'ccl', 'Ciclev10032359m.g' => 'ccl', 'CiPaw.01G081000' => 'cil', 'CiPaw.01G262500' => 'cil', 'CiPaw.01G269800' => 'cil', 'CiPaw.02G168400' => 'cil', 'CiPaw.05G119500' => 'cil', 'CiPaw.11G147300' => 'cil', 'ClCG01G003630' => 'cla', 'ClCG05G000510' => 'cla', 'ClCG05G002300' => 'cla', 'ClCG08G007650' => 'cla', 'ClCG10G021250' => 'cla', 'COL.COLO4_06218' => 'col', 'COL.COLO4_12538' => 'col', 'COL.COLO4_14775' => 'col', 'COL.COLO4_23875' => 'col', 'Cpa.g.sc141.16' => 'cpa', 'Cpa.g.sc169.16' => 'cpa', 'Cpa.g.sc244.4' => 'cpa', 'Cpa.g.sc244.5' => 'cpa', 'Cpa.g.sc29.87' => 'cpa', 'Cpa.g.sc53.115' => 'cpa', 'Cre03.g207502' => 'cre', 'Cre06.g277000' => 'cre', 'Cre09.g394050' => 'cre', 'CsaV3_3G007680' => 'csa', 'CsaV3_3G009710' => 'csa', 'CsaV3_3G034790' => 'csa', 'CsaV3_5G003750' => 'csa', 'CsaV3_6G036620' => 'csa', 'CSS0002288' => 'camsi', 'CSS0011250' => 'camsi', 'CSS0021619' => 'camsi', 'CSS0046701' => 'camsi', 'DCAR_006420' => 'dca', 'DCAR_006865' => 'dca', 'DCAR_008558' => 'dca', 'DCAR_028754' => 'dca', 'DCAR_028755' => 'dca', 'Dinv31218' => 'din', 'Dinv32371' => 'din', 'Dinv34250' => 'din', 'Dinv37156' => 'din', 'Dinv43704' => 'din', 'Duzib093G1811' => 'dzi', 'Duzib106G1622' => 'dzi', 'Duzib114G0504' => 'dzi', 'Duzib128G0338' => 'dzi', 'Duzib128G1577' => 'dzi', 'Duzib133G0104' => 'dzi', 'Duzib133G1080' => 'dzi', 'Duzib138G0324' => 'dzi', 'Duzib138G0394' => 'dzi', 'Duzib205G0122' => 'dzi', 'Duzib268G1020' => 'dzi', 'Duzib268G1359' => 'dzi', 'ECA232G3929' => 'eca', 'ECA236G2210' => 'eca', 'ECA236G2287' => 'eca', 'ECA240G4568' => 'eca', 'ECA247G0894' => 'eca', 'EL10Ac1g00200' => 'bvu', 'EL10Ac1g00886' => 'bvu', 'EL10As1g23091' => 'bvu', 'EL10As1g23092' => 'bvu', 'Eucgr.A01284' => 'egr', 'Eucgr.A01285' => 'egr', 'Eucgr.D02456' => 'egr', 'Eucgr.E00018' => 'egr', 'Eucgr.E01439' => 'egr', 'Eucgr.G02859' => 'egr', 'FAN01G0168' => 'fan', 'FAN01G0453' => 'fan', 'FAN01G2761' => 'fan', 'FAN02G1239' => 'fan', 'FAN03G0645' => 'fan', 'FAN03G2707' => 'fan', 'FAN03G2978' => 'fan', 'FAN04G0227' => 'fan', 'FAN06G0091' => 'fan', 'FAN06G1418' => 'fan', 'FAN06G1512' => 'fan', 'FAN06G1986' => 'fan', 'FAN06G2905' => 'fan', 'FAN06G4325' => 'fan', 'FAN08G0033' => 'fan', 'FAN09G0642' => 'fan', 'FAN10G1763' => 'fan', 'FAN10G2026' => 'fan', 'FAN10G2513' => 'fan', 'FAN10G3402' => 'fan', 'FAN10G3564' => 'fan', 'FAN10G3987' => 'fan', 'FAN13G1490' => 'fan', 'FAN14G5857' => 'fan', 'FAN18G1188' => 'fan', 'FvH4_5g00750' => 'fve', 'FvH4_6g13410' => 'fve', 'FvH4_7g11740' => 'fve', 'FvH4_7g17410' => 'fve', 'FvH4_7g18860' => 'fve', 'Glyma.01G099100' => 'gma', 'Glyma.01G142300' => 'gma', 'Glyma.03G025500' => 'gma', 'Glyma.03G069700' => 'gma', 'Glyma.03G260000' => 'gma', 'Glyma.09G269800' => 'gma', 'Glyma.10G208700' => 'gma', 'Glyma.18G220400' => 'gma', 'Glyma.20G182000' => 'gma', 'Gohir.A01G221726' => 'ghi', 'Gohir.A07G134600' => 'ghi', 'Gohir.A07G146000' => 'ghi', 'Gohir.A08G173900' => 'ghi', 'Gohir.A09G194900' => 'ghi', 'Gohir.A10G204100' => 'ghi', 'Gohir.A11G080600' => 'ghi', 'Gohir.A11G327500' => 'ghi', 'Gohir.A12G101800' => 'ghi', 'Gohir.D01G211200' => 'ghi', 'Gohir.D07G139200' => 'ghi', 'Gohir.D07G152100' => 'ghi', 'Gohir.D08G192600' => 'ghi', 'Gohir.D09G189200' => 'ghi', 'Gohir.D10G212000' => 'ghi', 'Gohir.D11G085200' => 'ghi', 'Gohir.D11G346400' => 'ghi', 'Gohir.D12G104800' => 'ghi', 'Gorai.001G151300' => 'gra', 'Gorai.001G174100' => 'gra', 'Gorai.002G257000' => 'gra', 'Gorai.004G202600' => 'gra', 'Gorai.007G090900' => 'gra', 'Gorai.007G376700' => 'gra', 'Gorai.008G114100' => 'gra', 'Gorai.011G237900' => 'gra', 'GSVIVG01005450001' => 'vvi', 'GSVIVG01016232001' => 'vvi', 'GSVIVG01026157001' => 'vvi', 'GSVIVG01027419001' => 'vvi', 'GSVIVG01027631001' => 'vvi', 'GSVIVG01034143001' => 'vvi', 'HanXRQChr03g0093921' => 'han', 'HanXRQChr04g0120001' => 'han', 'HanXRQChr04g0122561' => 'han', 'HanXRQChr09g0246851' => 'han', 'HanXRQChr10g0293311' => 'han', 'HanXRQChr13g0425231' => 'han', 'HanXRQChr16g0532571' => 'han', 'Haze_09050' => 'cav', 'Haze_15715' => 'cav', 'Haze_15716' => 'cav', 'Haze_16803' => 'cav', 'Haze_16850' => 'cav', 'Hma1.2p1_0301F.1_g118655' => 'hma', 'Hma1.2p1_0309F.1_g120590' => 'hma', 'Hma1.2p1_0936F.1_g238900' => 'hma', 'Hma1.2p1_3552F.1_g336740' => 'hma', 'HPP92_003520' => 'vpl', 'HPP92_006628' => 'vpl', 'HPP92_006645' => 'vpl', 'HPP92_014669' => 'vpl', 'HPP92_015077' => 'vpl', 'Hund16742' => 'sun', 'Hund17022' => 'sun', 'Lalb_Chr02g0152131' => 'lal', 'Lalb_Chr05g0225371' => 'lal', 'Lalb_Chr07g0189841' => 'lal', 'Lalb_Chr07g0192961' => 'lal', 'Lalb_Chr12g0208221' => 'lal', 'Lalb_Chr13g0291211' => 'lal', 'Lalb_Chr13g0291781' => 'lal', 'Lalb_Chr18g0044651' => 'lal', 'Lalb_Chr21g0313731' => 'lal', 'Lj1g0022533' => 'lja', 'Lj2A18T50' => 'lonja', 'Lj2A92G93' => 'lonja', 'Lj3A965T73' => 'lonja', 'Lj3g0000673' => 'lja', 'Lj3g0002666' => 'lja', 'Lj4g0016985' => 'lja', 'Lj5g0003625' => 'lja', 'Lj7A529G36' => 'lonja', 'Lj9A569T49' => 'lonja', 'Lj9A604T63' => 'lonja', 'Lsat_1_v5_gn_3_132060' => 'lsa', 'Lsat_1_v5_gn_4_68941' => 'lsa', 'Lsat_1_v5_gn_5_95580' => 'lsa', 'Lsat_1_v5_gn_7_161' => 'lsa', 'Lsat_1_v5_gn_7_7041' => 'lsa', 'Lsat_1_v5_gn_9_33481' => 'lsa', 'Lsat_1_v5_gn_9_68260' => 'lsa', 'Manes.01G073100' => 'mes', 'Manes.01G266300' => 'mes', 'Manes.02G033300' => 'mes', 'Manes.05G017900' => 'mes', 'Manes.05G046100' => 'mes', 'Manes.08G080900' => 'mes', 'Manes.10G049400' => 'mes', 'Mapoly0009s0186' => 'mpo', 'Mapoly0036s0118' => 'mpo', 'Mapoly0101s0046' => 'mpo', 'MBI04_g30218_MAGBIO' => 'mbi', 'MBI04_g35564_MAGBIO' => 'mbi', 'MBI12_g34011_MAGBIO' => 'mbi', 'MBI14_g04655_MAGBIO' => 'mbi', 'MCO07G653' => 'mco', 'MCO10G173' => 'mco', 'MD01G1087100' => 'mdo', 'MD01G1104200' => 'mdo', 'MD02G1205100' => 'mdo', 'MD04G1079200' => 'mdo', 'MD04G1131400' => 'mdo', 'MD07G1121600' => 'mdo', 'MD07G1157300' => 'mdo', 'MD07G1171000' => 'mdo', 'MD12G1144500' => 'mdo', 'Medtr1g094610' => 'mtr', 'Medtr4g021795' => 'mtr', 'Medtr4g023760' => 'mtr', 'Medtr7g118050' => 'mtr', 'MELO3C005582.2' => 'cme', 'MELO3C005989.2' => 'cme', 'MELO3C006192.2' => 'cme', 'MELO3C009248.2' => 'cme', 'MELO3C019817.2' => 'cme', 'Migut.B01625' => 'egut', 'Migut.B01915' => 'egut', 'Migut.F01721' => 'egut', 'Migut.J00314' => 'egut', 'MSTRG.20742' => 'ama', 'MSTRG.8134' => 'ama', 'Nitab4.5_0000096g0010' => 'nta', 'Nitab4.5_0000202g0030' => 'nta', 'Nitab4.5_0000216g0370' => 'nta', 'Nitab4.5_0000457g0230' => 'nta', 'Nitab4.5_0001702g0170' => 'nta', 'Nitab4.5_0003607g0010' => 'nta', 'Nitab4.5_0004917g0020' => 'nta', 'Nitab4.5_0007059g0010' => 'nta', 'Nitab4.5_0007184g0010' => 'nta', 'Nitab4.5_0007346g0020' => 'nta', 'Nn1g00410' => 'nnu', 'Nn1g01252' => 'nnu', 'Nn2g11168' => 'nnu', 'Nn2g13403' => 'nnu', 'Nn2g13760' => 'nnu', 'Nn4g26380' => 'nnu', 'Oeu000806.2' => 'oeu', 'Oeu005788.1' => 'oeu', 'Oeu006900.3' => 'oeu', 'Oeu007797.1' => 'oeu', 'Oeu011932.1' => 'oeu', 'Oeu022739.1' => 'oeu', 'Oeu037918.1' => 'oeu', 'Oeu055490.2' => 'oeu', 'Os01g0844400' => 'osa', 'Os02g0819100' => 'osa', 'Os03g0804300' => 'osa', 'Os05g0458000' => 'osa', 'Os07g0467800' => 'osa', 'Os12g0602200' => 'osa', 'Peaxi162Scf00013g03444' => 'pax', 'Peaxi162Scf00094g01120' => 'pax', 'Peaxi162Scf00191g01211' => 'pax', 'Peaxi162Scf00238g01110' => 'pax', 'Peaxi162Scf00330g00719' => 'pax', 'Peaxi162Scf00627g00018' => 'pax', 'PGR031G2686' => 'pgr', 'PGR042G0809' => 'pgr', 'PGR142G0193' => 'pgr', 'PGSC0003DMG400011066' => 'stu', 'PGSC0003DMG400012041' => 'stu', 'PGSC0003DMG400013678' => 'stu', 'PGSC0003DMG400023477' => 'stu', 'PGSC0003DMG400025956' => 'stu', 'PGSC0003DMG401019151' => 'stu', 'Phvul.006G116400' => 'pvu', 'Phvul.007G097300' => 'pvu', 'Phvul.010G015000' => 'pvu', 'Phvul.010G083900' => 'pvu', 'Potri.001G117100' => 'ptr', 'Potri.002G147300' => 'ptr', 'Potri.003G115600' => 'ptr', 'Potri.006G087400' => 'ptr', 'Potri.010G226100' => 'ptr', 'Potri.014G069200' => 'ptr', 'Potri.014G104000' => 'ptr', 'Potri.016G100200' => 'ptr', 'Pp3c10_20450' => 'ppa', 'Pp3c1_42400' => 'ppa', 'Pp3c3_24390' => 'ppa', 'Pp3c3_2860' => 'ppa', 'PRCOL_00003193' => 'pco', 'Prupe.2G144500' => 'ppe', 'Prupe.2G195700' => 'ppe', 'Prupe.2G209800' => 'ppe', 'Prupe.5G080000' => 'ppe', 'Prupe.6G257900' => 'ppe', 'Psat3g001160' => 'psa', 'Psat6g181880' => 'psa', 'Psat7g233720' => 'psa', 'PSO063G7587' => 'pso', 'PSO339G2145' => 'pso', 'PSO339G3369' => 'pso', 'PSO478G2747' => 'pso', 'PSO513G0140' => 'pso', 'PSO782G1614' => 'pso', 'PSO782G4889' => 'pso', 'PSO782G5485' => 'pso', 'PSO801G0241' => 'pso', 'QL07p048854' => 'qlo', 'QL08p046745' => 'qlo', 'QL08p052606' => 'qlo', 'QL08p053414' => 'qlo', 'QL08p054868' => 'qlo', 'RcHm_v2.0_Chr1g0350251' => 'rch', 'RcHm_v2.0_Chr1g0360851' => 'rch', 'RcHm_v2.0_Chr1g0362791' => 'rch', 'RcHm_v2.0_Chr3g0466281' => 'rch', 'RcHm_v2.0_Chr7g0201481' => 'rch', 'Rhsim01G0148600' => 'rsi', 'Rhsim05G0194400' => 'rsi', 'Rhsim07G0000700' => 'rsi', 'Rhsim07G0000800' => 'rsi', 'Rhsim07G0027900' => 'rsi', 'Rhsim09G0149500' => 'rsi', 'RhsimUnG0186900' => 'rsi', 'Sabra01G0089900' => 'sbr', 'Sabra02G0114700' => 'sbr', 'Sabra02G0116300' => 'sbr', 'Sabra03G0080100' => 'sbr', 'Sabra08G0024300' => 'sbr', 'Sabra10G0174300' => 'sbr', 'Sabra14G0048900' => 'sbr', 'Sabra14G0076500' => 'sbr', 'SalBow5G2513' => 'sbo', 'Sc01g0002300' => 'sci', 'Sc01g0004450' => 'sci', 'Sc06g0001680' => 'sci', 'Sc23g0003580' => 'sci', 'Sed0000913' => 'sed', 'Sed0001655' => 'sed', 'Sed0007745' => 'sed', 'Sed0010951' => 'sed', 'Sed0017599' => 'sed', 'Sed0021405' => 'sed', 'Sed0022810' => 'sed', 'SEGI_07099' => 'sgi', 'SEGI_11931' => 'sgi', 'SEGI_13187' => 'sgi', 'SEGI_29958' => 'sgi', 'SEGI_36351' => 'sgi', 'SGA_v2.0_scaffold126G33770' => 'sas', 'SGA_v2.0_scaffold153G37003' => 'sas', 'SGA_v2.0_scaffold2G01359' => 'sas', 'SGA_v2.0_scaffold5G03064' => 'sas', 'SGA_v2.0_scaffold95G28903' => 'sas', 'SHI12701' => 'shi', 'SHI26410' => 'shi', 'SHI38997' => 'shi', 'SHI53759' => 'shi', 'SHI53886' => 'shi', 'SHI54714' => 'shi', 'SMO011G0041' => 'smo', 'SMO146G0251' => 'smo', 'SMO160G0004' => 'smo', 'SMO174G0057' => 'smo', 'SMO244G0089' => 'smo', 'SMO296G0011' => 'smo', 'Solyc01g091280.3' => 'sly', 'Solyc05g047610.3' => 'sly', 'Solyc05g047640.3' => 'sly', 'Solyc05g055630.3' => 'sly', 'Solyc10g018160.2' => 'sly', 'Solyc10g084820.2' => 'sly', 'Solyc10g086565.2' => 'sly', 'Sopen01g037030' => 'spe', 'Sopen05g027920' => 'spe', 'Sopen05g034070' => 'spe', 'Sopen10g007260' => 'spe', 'Sopen10g034260' => 'spe', 'Sopen10g035950' => 'spe', 'Sp3g07710' => 'spa', 'Sp4g27420' => 'spa', 'Sp5g02450' => 'spa', 'Sp6g01280' => 'spa', 'Sp6g38480' => 'spa', 'Sp7g20780' => 'spa', 'TAR374G1413' => 'tar', 'TAR623G1777' => 'tar', 'TAR629G2370' => 'tar', 'TAR633G1759' => 'tar', 'TAR636G3387' => 'tar', 'THA.LOC104802447' => 'tha', 'THA.LOC104813916' => 'tha', 'THA.LOC104816423' => 'tha', 'THA.LOC104817246' => 'tha', 'THA.LOC104825895' => 'tha', 'Thecc.01G335200' => 'tca', 'Thecc.01G377400' => 'tca', 'Thecc.03G262200' => 'tca', 'Thecc.05G036800' => 'tca', 'Thecc.10G080500' => 'tca', 'Thecc.10G080800' => 'tca', 'Thhalv10001560m.g' => 'esa', 'Thhalv10006120m.g' => 'esa', 'Thhalv10014375m.g' => 'esa', 'Thhalv10021264m.g' => 'esa', 'Thhalv10028856m.g' => 'esa', 'TPR.G1914' => 'tpr', 'TPR.G4757' => 'tpr', 'TPR.G5595' => 'tpr', 'TWI14G0952' => 'twi', 'TWI14G1307' => 'twi', 'TWI38G2143' => 'twi', 'TWI59G0826' => 'twi', 'TWI77G0527' => 'twi', 'TWI81G0150' => 'twi', 'unitig_21.g21018' => 'ugi', 'unitig_26.g9725' => 'ugi', 'unitig_744.g24653' => 'ugi', 'unitig_749.g13778' => 'ugi', 'unitig_899.g15035' => 'ugi', 'vmacro04296' => 'vma', 'vmacro04852' => 'vma', 'vmacro13404' => 'vma', 'vmacro20169' => 'vma', 'vmacro21014' => 'vma', 'VMungo0331G0237' => 'vmu', 'VMungo0331G0706' => 'vmu', 'VMungo0331G1361' => 'vmu', 'VMungo0331G1489' => 'vmu', 'VMungo0540G1037' => 'vmu', 'VMungo0720G2487' => 'vmu', 'VMungo0720G2721' => 'vmu', 'Zm00001eb086860' => 'zma', 'Zm00001eb104760' => 'zma', 'Zm00001eb148220' => 'zma', 'Zm00001eb259030' => 'zma', 'Zm00001eb289590' => 'zma', 'Zm00001eb420150' => 'zma' ), 'gf_id' => 'HOM05D000968', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000968' ), 'data_identifier' => 'HOM05D000968', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000968', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p31690' => 'bna', 'A03p36040' => 'bna', 'A03p53730' => 'bna', 'A04p01410' => 'bna', 'A05p05420' => 'bna', 'A05p39630' => 'bna', 'A05p39640' => 'bna', 'A09p00970' => 'bna', 'A09p53060' => 'bna', 'A10p31890' => 'bna', 'Aa31LG10G15040' => 'aar', 'Aa31LG1G21090' => 'aar', 'Aa31LG1G26900' => 'aar', 'Aa31LG3G1820' => 'aar', 'Aa31LG5G1100' => 'aar', 'Aa31LG6G4740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2265' => 'aag', 'Actinidia07998' => 'ach', 'Actinidia11266' => 'ach', 'Actinidia12682' => 'ach', 'Actinidia26479' => 'ach', 'Actinidia31406' => 'ach', 'Actinidia32437' => 'ach', 'Actinidia38862' => 'ach', 'Ah.05g174230' => 'amhyb', 'Ah.05g179070' => 'amhyb', 'Ah.05g179090' => 'amhyb', 'Ah.12g059950' => 'amhyb', 'AL3G20480' => 'aly', 'AL4G44520' => 'aly', 'AL5G43110' => 'aly', 'AL6G13890' => 'aly', 'AL6G52620' => 'aly', 'AL7G30830' => 'aly', 'Aqoxy1G00899' => 'aox', 'Aqoxy5G04333' => 'aox', 'Aqoxy7G00641' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3IZ0NN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4EF6AW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W9P8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79GA3M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C43NQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFCU6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G95YVJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCHK29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LU1UG8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX91RN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGB4B1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8DA0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9H7JI' => 'arhy', 'AT3G09320' => 'ath', 'AT3G60800' => 'ath', 'AT4G00840' => 'ath', 'AT4G22750' => 'ath', 'AT5G04270' => 'ath', 'ATR0090G003' => 'atr', 'ATR0559G349' => 'atr', 'ATR0680G261' => 'atr', 'ATR0810G048' => 'atr', 'Atru.chr12.831' => 'acertr', 'Atru.chr5.303' => 'acertr', 'Atru.chr5.748' => 'acertr', 'Atru.chr8.1999' => 'acertr', 'Atru.chr9.1436' => 'acertr', 'AUR62004211' => 'cqu', 'AUR62004548' => 'cqu', 'AUR62013637' => 'cqu', 'AUR62022662' => 'cqu', 'AUR62025777' => 'cqu', 'AUR62042386' => 'cqu', 'BcaB01g02310' => 'bca', 'BcaB01g06062' => 'bca', 'BcaB02g08975' => 'bca', 'BcaB02g08980' => 'bca', 'BcaC01g04228' => 'bca', 'BcaC01g06830' => 'bca', 'BcaC02g10186' => 'bca', 'BcaC02g12214' => 'bca', 'BcaC04g24101' => 'bca', 'BcaC05g29520' => 'bca', 'BcaC05g29661' => 'bca', 'BcaC06g32130' => 'bca', 'BcaC06g32131' => 'bca', 'BcaC07g40601' => 'bca', 'BcaC07g42641' => 'bca', 'BcaNung01038' => 'bca', 'BcaNung01676' => 'bca', 'BcaNung02480' => 'bca', 'BcaNung07376' => 'bca', 'BolC3t16146H' => 'bol', 'BolC3t16637H' => 'bol', 'BolC4t22257H' => 'bol', 'BolC4t24728H' => 'bol', 'BolC5t34517H' => 'bol', 'BolC7t45703H' => 'bol', 'BolC8t51166H' => 'bol', 'BolC9t53038H' => 'bol', 'BolC9t60000H' => 'bol', 'BraA01t01345Z' => 'bra', 'BraA01t01346Z' => 'bra', 'BraA01t01348Z' => 'bra', 'BraA03t12347Z' => 'bra', 'BraA03t12775Z' => 'bra', 'BraA03t14439Z' => 'bra', 'BraA04t15860Z' => 'bra', 'BraA05t19511Z' => 'bra', 'BraA05t22746Z' => 'bra', 'BraA09t35767Z' => 'bra', 'BraA09t40732Z' => 'bra', 'BraA10t45233Z' => 'bra', 'C03p38720' => 'bna', 'C03p43680' => 'bna', 'C04p06350' => 'bna', 'C04p31800' => 'bna', 'C05p58680' => 'bna', 'C07p52110' => 'bna', 'C08p35760' => 'bna', 'C09p01050' => 'bna', 'C09p72600' => 'bna', 'CAN.G106.2' => 'can', 'CAN.G1482.1' => 'can', 'CAN.G324.12' => 'can', 'CAN.G388.20' => 'can', 'CAN.G412.7' => 'can', 'CAN.G694.32' => 'can', 'CAN.G92.12' => 'can', 'CANSAT11G2353' => 'cansat', 'CANSAT21G1398' => 'cansat', 'CANSAT56G2456' => 'cansat', 'CANSAT56G3031' => 'cansat', 'CANSAT56G4539' => 'cansat', 'CARHR083680' => 'chi', 'CARHR171190' => 'chi', 'CARHR209010' => 'chi', 'CARHR229680' => 'chi', 'CARHR249490' => 'chi', 'Carub.0003s0844' => 'cru', 'Carub.0005s2755' => 'cru', 'Carub.0006s0322' => 'cru', 'Carub.0006s3586' => 'cru', 'Carub.0007s1855' => 'cru', 'Ca_07808_v3' => 'car', 'Ca_09535_v3' => 'car', 'Ca_10548_v3' => 'car', 'Ca_19913_v3' => 'car', 'Ca_19916_v3' => 'car', 'Ca_19975_v3' => 'car', 'CBR_g22876' => 'cbr', 'CBR_g22879' => 'cbr', 'CBR_g38491' => 'cbr', 'CBR_g54185' => 'cbr', 'CBR_g54190' => 'cbr', 'Cc02_g11020' => 'ccan', 'Cc02_g23920' => 'ccan', 'Cc02_g39860' => 'ccan', 'Cc02_g39870' => 'ccan', 'Cc03_g06760' => 'ccan', 'Cc06_g02450' => 'ccan', 'Cc09_g09450' => 'ccan', 'CDE02G1959' => 'cde', 'CDE04G0600' => 'cde', 'CDE07G1996' => 'cde', 'CDE07G2078' => 'cde', 'CDE11G0611' => 'cde', 'Cfa001683' => 'cfa', 'Cfa001734' => 'cfa', 'Cfa001737' => 'cfa', 'Cfa003751' => 'cfa', 'Cfa012019' => 'cfa', 'Cfa017353' => 'cfa', 'Cfa017732' => 'cfa', 'Cfa022464' => 'cfa', 'Ciclev10012400m.g' => 'ccl', 'Ciclev10021242m.g' => 'ccl', 'Ciclev10021302m.g' => 'ccl', 'Ciclev10021463m.g' => 'ccl', 'Ciclev10032359m.g' => 'ccl', 'CiPaw.01G081000' => 'cil', 'CiPaw.01G262500' => 'cil', 'CiPaw.01G269800' => 'cil', 'CiPaw.02G168400' => 'cil', 'CiPaw.05G119500' => 'cil', 'CiPaw.11G147300' => 'cil', 'ClCG01G003630' => 'cla', 'ClCG05G000510' => 'cla', 'ClCG05G002300' => 'cla', 'ClCG08G007650' => 'cla', 'ClCG10G021250' => 'cla', 'COL.COLO4_06218' => 'col', 'COL.COLO4_12538' => 'col', 'COL.COLO4_14775' => 'col', 'COL.COLO4_23875' => 'col', 'Cpa.g.sc141.16' => 'cpa', 'Cpa.g.sc169.16' => 'cpa', 'Cpa.g.sc244.4' => 'cpa', 'Cpa.g.sc244.5' => 'cpa', 'Cpa.g.sc29.87' => 'cpa', 'Cpa.g.sc53.115' => 'cpa', 'Cre03.g207502' => 'cre', 'Cre06.g277000' => 'cre', 'Cre09.g394050' => 'cre', 'CsaV3_3G007680' => 'csa', 'CsaV3_3G009710' => 'csa', 'CsaV3_3G034790' => 'csa', 'CsaV3_5G003750' => 'csa', 'CsaV3_6G036620' => 'csa', 'CSS0002288' => 'camsi', 'CSS0011250' => 'camsi', 'CSS0021619' => 'camsi', 'CSS0046701' => 'camsi', 'DCAR_006420' => 'dca', 'DCAR_006865' => 'dca', 'DCAR_008558' => 'dca', 'DCAR_028754' => 'dca', 'DCAR_028755' => 'dca', 'Dinv31218' => 'din', 'Dinv32371' => 'din', 'Dinv34250' => 'din', 'Dinv37156' => 'din', 'Dinv43704' => 'din', 'Duzib093G1811' => 'dzi', 'Duzib106G1622' => 'dzi', 'Duzib114G0504' => 'dzi', 'Duzib128G0338' => 'dzi', 'Duzib128G1577' => 'dzi', 'Duzib133G0104' => 'dzi', 'Duzib133G1080' => 'dzi', 'Duzib138G0324' => 'dzi', 'Duzib138G0394' => 'dzi', 'Duzib205G0122' => 'dzi', 'Duzib268G1020' => 'dzi', 'Duzib268G1359' => 'dzi', 'ECA232G3929' => 'eca', 'ECA236G2210' => 'eca', 'ECA236G2287' => 'eca', 'ECA240G4568' => 'eca', 'ECA247G0894' => 'eca', 'EL10Ac1g00200' => 'bvu', 'EL10Ac1g00886' => 'bvu', 'EL10As1g23091' => 'bvu', 'EL10As1g23092' => 'bvu', 'Eucgr.A01284' => 'egr', 'Eucgr.A01285' => 'egr', 'Eucgr.D02456' => 'egr', 'Eucgr.E00018' => 'egr', 'Eucgr.E01439' => 'egr', 'Eucgr.G02859' => 'egr', 'FAN01G0168' => 'fan', 'FAN01G0453' => 'fan', 'FAN01G2761' => 'fan', 'FAN02G1239' => 'fan', 'FAN03G0645' => 'fan', 'FAN03G2707' => 'fan', 'FAN03G2978' => 'fan', 'FAN04G0227' => 'fan', 'FAN06G0091' => 'fan', 'FAN06G1418' => 'fan', 'FAN06G1512' => 'fan', 'FAN06G1986' => 'fan', 'FAN06G2905' => 'fan', 'FAN06G4325' => 'fan', 'FAN08G0033' => 'fan', 'FAN09G0642' => 'fan', 'FAN10G1763' => 'fan', 'FAN10G2026' => 'fan', 'FAN10G2513' => 'fan', 'FAN10G3402' => 'fan', 'FAN10G3564' => 'fan', 'FAN10G3987' => 'fan', 'FAN13G1490' => 'fan', 'FAN14G5857' => 'fan', 'FAN18G1188' => 'fan', 'FvH4_5g00750' => 'fve', 'FvH4_6g13410' => 'fve', 'FvH4_7g11740' => 'fve', 'FvH4_7g17410' => 'fve', 'FvH4_7g18860' => 'fve', 'Glyma.01G099100' => 'gma', 'Glyma.01G142300' => 'gma', 'Glyma.03G025500' => 'gma', 'Glyma.03G069700' => 'gma', 'Glyma.03G260000' => 'gma', 'Glyma.09G269800' => 'gma', 'Glyma.10G208700' => 'gma', 'Glyma.18G220400' => 'gma', 'Glyma.20G182000' => 'gma', 'Gohir.A01G221726' => 'ghi', 'Gohir.A07G134600' => 'ghi', 'Gohir.A07G146000' => 'ghi', 'Gohir.A08G173900' => 'ghi', 'Gohir.A09G194900' => 'ghi', 'Gohir.A10G204100' => 'ghi', 'Gohir.A11G080600' => 'ghi', 'Gohir.A11G327500' => 'ghi', 'Gohir.A12G101800' => 'ghi', 'Gohir.D01G211200' => 'ghi', 'Gohir.D07G139200' => 'ghi', 'Gohir.D07G152100' => 'ghi', 'Gohir.D08G192600' => 'ghi', 'Gohir.D09G189200' => 'ghi', 'Gohir.D10G212000' => 'ghi', 'Gohir.D11G085200' => 'ghi', 'Gohir.D11G346400' => 'ghi', 'Gohir.D12G104800' => 'ghi', 'Gorai.001G151300' => 'gra', 'Gorai.001G174100' => 'gra', 'Gorai.002G257000' => 'gra', 'Gorai.004G202600' => 'gra', 'Gorai.007G090900' => 'gra', 'Gorai.007G376700' => 'gra', 'Gorai.008G114100' => 'gra', 'Gorai.011G237900' => 'gra', 'GSVIVG01005450001' => 'vvi', 'GSVIVG01016232001' => 'vvi', 'GSVIVG01026157001' => 'vvi', 'GSVIVG01027419001' => 'vvi', 'GSVIVG01027631001' => 'vvi', 'GSVIVG01034143001' => 'vvi', 'HanXRQChr03g0093921' => 'han', 'HanXRQChr04g0120001' => 'han', 'HanXRQChr04g0122561' => 'han', 'HanXRQChr09g0246851' => 'han', 'HanXRQChr10g0293311' => 'han', 'HanXRQChr13g0425231' => 'han', 'HanXRQChr16g0532571' => 'han', 'Haze_09050' => 'cav', 'Haze_15715' => 'cav', 'Haze_15716' => 'cav', 'Haze_16803' => 'cav', 'Haze_16850' => 'cav', 'Hma1.2p1_0301F.1_g118655' => 'hma', 'Hma1.2p1_0309F.1_g120590' => 'hma', 'Hma1.2p1_0936F.1_g238900' => 'hma', 'Hma1.2p1_3552F.1_g336740' => 'hma', 'HPP92_003520' => 'vpl', 'HPP92_006628' => 'vpl', 'HPP92_006645' => 'vpl', 'HPP92_014669' => 'vpl', 'HPP92_015077' => 'vpl', 'Hund16742' => 'sun', 'Hund17022' => 'sun', 'Lalb_Chr02g0152131' => 'lal', 'Lalb_Chr05g0225371' => 'lal', 'Lalb_Chr07g0189841' => 'lal', 'Lalb_Chr07g0192961' => 'lal', 'Lalb_Chr12g0208221' => 'lal', 'Lalb_Chr13g0291211' => 'lal', 'Lalb_Chr13g0291781' => 'lal', 'Lalb_Chr18g0044651' => 'lal', 'Lalb_Chr21g0313731' => 'lal', 'Lj1g0022533' => 'lja', 'Lj2A18T50' => 'lonja', 'Lj2A92G93' => 'lonja', 'Lj3A965T73' => 'lonja', 'Lj3g0000673' => 'lja', 'Lj3g0002666' => 'lja', 'Lj4g0016985' => 'lja', 'Lj5g0003625' => 'lja', 'Lj7A529G36' => 'lonja', 'Lj9A569T49' => 'lonja', 'Lj9A604T63' => 'lonja', 'Lsat_1_v5_gn_3_132060' => 'lsa', 'Lsat_1_v5_gn_4_68941' => 'lsa', 'Lsat_1_v5_gn_5_95580' => 'lsa', 'Lsat_1_v5_gn_7_161' => 'lsa', 'Lsat_1_v5_gn_7_7041' => 'lsa', 'Lsat_1_v5_gn_9_33481' => 'lsa', 'Lsat_1_v5_gn_9_68260' => 'lsa', 'Manes.01G073100' => 'mes', 'Manes.01G266300' => 'mes', 'Manes.02G033300' => 'mes', 'Manes.05G017900' => 'mes', 'Manes.05G046100' => 'mes', 'Manes.08G080900' => 'mes', 'Manes.10G049400' => 'mes', 'Mapoly0009s0186' => 'mpo', 'Mapoly0036s0118' => 'mpo', 'Mapoly0101s0046' => 'mpo', 'MBI04_g30218_MAGBIO' => 'mbi', 'MBI04_g35564_MAGBIO' => 'mbi', 'MBI12_g34011_MAGBIO' => 'mbi', 'MBI14_g04655_MAGBIO' => 'mbi', 'MCO07G653' => 'mco', 'MCO10G173' => 'mco', 'MD01G1087100' => 'mdo', 'MD01G1104200' => 'mdo', 'MD02G1205100' => 'mdo', 'MD04G1079200' => 'mdo', 'MD04G1131400' => 'mdo', 'MD07G1121600' => 'mdo', 'MD07G1157300' => 'mdo', 'MD07G1171000' => 'mdo', 'MD12G1144500' => 'mdo', 'Medtr1g094610' => 'mtr', 'Medtr4g021795' => 'mtr', 'Medtr4g023760' => 'mtr', 'Medtr7g118050' => 'mtr', 'MELO3C005582.2' => 'cme', 'MELO3C005989.2' => 'cme', 'MELO3C006192.2' => 'cme', 'MELO3C009248.2' => 'cme', 'MELO3C019817.2' => 'cme', 'Migut.B01625' => 'egut', 'Migut.B01915' => 'egut', 'Migut.F01721' => 'egut', 'Migut.J00314' => 'egut', 'MSTRG.20742' => 'ama', 'MSTRG.8134' => 'ama', 'Nitab4.5_0000096g0010' => 'nta', 'Nitab4.5_0000202g0030' => 'nta', 'Nitab4.5_0000216g0370' => 'nta', 'Nitab4.5_0000457g0230' => 'nta', 'Nitab4.5_0001702g0170' => 'nta', 'Nitab4.5_0003607g0010' => 'nta', 'Nitab4.5_0004917g0020' => 'nta', 'Nitab4.5_0007059g0010' => 'nta', 'Nitab4.5_0007184g0010' => 'nta', 'Nitab4.5_0007346g0020' => 'nta', 'Nn1g00410' => 'nnu', 'Nn1g01252' => 'nnu', 'Nn2g11168' => 'nnu', 'Nn2g13403' => 'nnu', 'Nn2g13760' => 'nnu', 'Nn4g26380' => 'nnu', 'Oeu000806.2' => 'oeu', 'Oeu005788.1' => 'oeu', 'Oeu006900.3' => 'oeu', 'Oeu007797.1' => 'oeu', 'Oeu011932.1' => 'oeu', 'Oeu022739.1' => 'oeu', 'Oeu037918.1' => 'oeu', 'Oeu055490.2' => 'oeu', 'Os01g0844400' => 'osa', 'Os02g0819100' => 'osa', 'Os03g0804300' => 'osa', 'Os05g0458000' => 'osa', 'Os07g0467800' => 'osa', 'Os12g0602200' => 'osa', 'Peaxi162Scf00013g03444' => 'pax', 'Peaxi162Scf00094g01120' => 'pax', 'Peaxi162Scf00191g01211' => 'pax', 'Peaxi162Scf00238g01110' => 'pax', 'Peaxi162Scf00330g00719' => 'pax', 'Peaxi162Scf00627g00018' => 'pax', 'PGR031G2686' => 'pgr', 'PGR042G0809' => 'pgr', 'PGR142G0193' => 'pgr', 'PGSC0003DMG400011066' => 'stu', 'PGSC0003DMG400012041' => 'stu', 'PGSC0003DMG400013678' => 'stu', 'PGSC0003DMG400023477' => 'stu', 'PGSC0003DMG400025956' => 'stu', 'PGSC0003DMG401019151' => 'stu', 'Phvul.006G116400' => 'pvu', 'Phvul.007G097300' => 'pvu', 'Phvul.010G015000' => 'pvu', 'Phvul.010G083900' => 'pvu', 'Potri.001G117100' => 'ptr', 'Potri.002G147300' => 'ptr', 'Potri.003G115600' => 'ptr', 'Potri.006G087400' => 'ptr', 'Potri.010G226100' => 'ptr', 'Potri.014G069200' => 'ptr', 'Potri.014G104000' => 'ptr', 'Potri.016G100200' => 'ptr', 'Pp3c10_20450' => 'ppa', 'Pp3c1_42400' => 'ppa', 'Pp3c3_24390' => 'ppa', 'Pp3c3_2860' => 'ppa', 'PRCOL_00003193' => 'pco', 'Prupe.2G144500' => 'ppe', 'Prupe.2G195700' => 'ppe', 'Prupe.2G209800' => 'ppe', 'Prupe.5G080000' => 'ppe', 'Prupe.6G257900' => 'ppe', 'Psat3g001160' => 'psa', 'Psat6g181880' => 'psa', 'Psat7g233720' => 'psa', 'PSO063G7587' => 'pso', 'PSO339G2145' => 'pso', 'PSO339G3369' => 'pso', 'PSO478G2747' => 'pso', 'PSO513G0140' => 'pso', 'PSO782G1614' => 'pso', 'PSO782G4889' => 'pso', 'PSO782G5485' => 'pso', 'PSO801G0241' => 'pso', 'QL07p048854' => 'qlo', 'QL08p046745' => 'qlo', 'QL08p052606' => 'qlo', 'QL08p053414' => 'qlo', 'QL08p054868' => 'qlo', 'RcHm_v2.0_Chr1g0350251' => 'rch', 'RcHm_v2.0_Chr1g0360851' => 'rch', 'RcHm_v2.0_Chr1g0362791' => 'rch', 'RcHm_v2.0_Chr3g0466281' => 'rch', 'RcHm_v2.0_Chr7g0201481' => 'rch', 'Rhsim01G0148600' => 'rsi', 'Rhsim05G0194400' => 'rsi', 'Rhsim07G0000700' => 'rsi', 'Rhsim07G0000800' => 'rsi', 'Rhsim07G0027900' => 'rsi', 'Rhsim09G0149500' => 'rsi', 'RhsimUnG0186900' => 'rsi', 'Sabra01G0089900' => 'sbr', 'Sabra02G0114700' => 'sbr', 'Sabra02G0116300' => 'sbr', 'Sabra03G0080100' => 'sbr', 'Sabra08G0024300' => 'sbr', 'Sabra10G0174300' => 'sbr', 'Sabra14G0048900' => 'sbr', 'Sabra14G0076500' => 'sbr', 'SalBow5G2513' => 'sbo', 'Sc01g0002300' => 'sci', 'Sc01g0004450' => 'sci', 'Sc06g0001680' => 'sci', 'Sc23g0003580' => 'sci', 'Sed0000913' => 'sed', 'Sed0001655' => 'sed', 'Sed0007745' => 'sed', 'Sed0010951' => 'sed', 'Sed0017599' => 'sed', 'Sed0021405' => 'sed', 'Sed0022810' => 'sed', 'SEGI_07099' => 'sgi', 'SEGI_11931' => 'sgi', 'SEGI_13187' => 'sgi', 'SEGI_29958' => 'sgi', 'SEGI_36351' => 'sgi', 'SGA_v2.0_scaffold126G33770' => 'sas', 'SGA_v2.0_scaffold153G37003' => 'sas', 'SGA_v2.0_scaffold2G01359' => 'sas', 'SGA_v2.0_scaffold5G03064' => 'sas', 'SGA_v2.0_scaffold95G28903' => 'sas', 'SHI12701' => 'shi', 'SHI26410' => 'shi', 'SHI38997' => 'shi', 'SHI53759' => 'shi', 'SHI53886' => 'shi', 'SHI54714' => 'shi', 'SMO011G0041' => 'smo', 'SMO146G0251' => 'smo', 'SMO160G0004' => 'smo', 'SMO174G0057' => 'smo', 'SMO244G0089' => 'smo', 'SMO296G0011' => 'smo', 'Solyc01g091280.3' => 'sly', 'Solyc05g047610.3' => 'sly', 'Solyc05g047640.3' => 'sly', 'Solyc05g055630.3' => 'sly', 'Solyc10g018160.2' => 'sly', 'Solyc10g084820.2' => 'sly', 'Solyc10g086565.2' => 'sly', 'Sopen01g037030' => 'spe', 'Sopen05g027920' => 'spe', 'Sopen05g034070' => 'spe', 'Sopen10g007260' => 'spe', 'Sopen10g034260' => 'spe', 'Sopen10g035950' => 'spe', 'Sp3g07710' => 'spa', 'Sp4g27420' => 'spa', 'Sp5g02450' => 'spa', 'Sp6g01280' => 'spa', 'Sp6g38480' => 'spa', 'Sp7g20780' => 'spa', 'TAR374G1413' => 'tar', 'TAR623G1777' => 'tar', 'TAR629G2370' => 'tar', 'TAR633G1759' => 'tar', 'TAR636G3387' => 'tar', 'THA.LOC104802447' => 'tha', 'THA.LOC104813916' => 'tha', 'THA.LOC104816423' => 'tha', 'THA.LOC104817246' => 'tha', 'THA.LOC104825895' => 'tha', 'Thecc.01G335200' => 'tca', 'Thecc.01G377400' => 'tca', 'Thecc.03G262200' => 'tca', 'Thecc.05G036800' => 'tca', 'Thecc.10G080500' => 'tca', 'Thecc.10G080800' => 'tca', 'Thhalv10001560m.g' => 'esa', 'Thhalv10006120m.g' => 'esa', 'Thhalv10014375m.g' => 'esa', 'Thhalv10021264m.g' => 'esa', 'Thhalv10028856m.g' => 'esa', 'TPR.G1914' => 'tpr', 'TPR.G4757' => 'tpr', 'TPR.G5595' => 'tpr', 'TWI14G0952' => 'twi', 'TWI14G1307' => 'twi', 'TWI38G2143' => 'twi', 'TWI59G0826' => 'twi', 'TWI77G0527' => 'twi', 'TWI81G0150' => 'twi', 'unitig_21.g21018' => 'ugi', 'unitig_26.g9725' => 'ugi', 'unitig_744.g24653' => 'ugi', 'unitig_749.g13778' => 'ugi', 'unitig_899.g15035' => 'ugi', 'vmacro04296' => 'vma', 'vmacro04852' => 'vma', 'vmacro13404' => 'vma', 'vmacro20169' => 'vma', 'vmacro21014' => 'vma', 'VMungo0331G0237' => 'vmu', 'VMungo0331G0706' => 'vmu', 'VMungo0331G1361' => 'vmu', 'VMungo0331G1489' => 'vmu', 'VMungo0540G1037' => 'vmu', 'VMungo0720G2487' => 'vmu', 'VMungo0720G2721' => 'vmu', 'Zm00001eb086860' => 'zma', 'Zm00001eb104760' => 'zma', 'Zm00001eb148220' => 'zma', 'Zm00001eb259030' => 'zma', 'Zm00001eb289590' => 'zma', 'Zm00001eb420150' => 'zma' ) $gf_id = 'HOM05D000968' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000968' ) $data_identifier = 'HOM05D000968' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 19, 'bol' => (int) 9, 'bra' => (int) 12, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 5, 'ccan' => (int) 7, 'cde' => (int) 5, 'cfa' => (int) 8, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 4, 'dca' => (int) 5, 'din' => (int) 5, 'dzi' => (int) 12, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 25, 'fve' => (int) 5, 'gma' => (int) 9, 'ghi' => (int) 18, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 7, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 5, 'sun' => (int) 2, 'lal' => (int) 9, 'lja' => (int) 5, 'lonja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 9, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 2, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 3, 'stu' => (int) 6, 'pvu' => (int) 4, 'ptr' => (int) 8, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 3, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 1, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 5, 'sas' => (int) 5, 'shi' => (int) 6, 'smo' => (int) 6, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 3, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420150' $species_info = array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ) $local_species = 'cpa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000968', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p31690' => 'bna', 'A03p36040' => 'bna', 'A03p53730' => 'bna', 'A04p01410' => 'bna', 'A05p05420' => 'bna', 'A05p39630' => 'bna', 'A05p39640' => 'bna', 'A09p00970' => 'bna', 'A09p53060' => 'bna', 'A10p31890' => 'bna', 'Aa31LG10G15040' => 'aar', 'Aa31LG1G21090' => 'aar', 'Aa31LG1G26900' => 'aar', 'Aa31LG3G1820' => 'aar', 'Aa31LG5G1100' => 'aar', 'Aa31LG6G4740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2265' => 'aag', 'Actinidia07998' => 'ach', 'Actinidia11266' => 'ach', 'Actinidia12682' => 'ach', 'Actinidia26479' => 'ach', 'Actinidia31406' => 'ach', 'Actinidia32437' => 'ach', 'Actinidia38862' => 'ach', 'Ah.05g174230' => 'amhyb', 'Ah.05g179070' => 'amhyb', 'Ah.05g179090' => 'amhyb', 'Ah.12g059950' => 'amhyb', 'AL3G20480' => 'aly', 'AL4G44520' => 'aly', 'AL5G43110' => 'aly', 'AL6G13890' => 'aly', 'AL6G52620' => 'aly', 'AL7G30830' => 'aly', 'Aqoxy1G00899' => 'aox', 'Aqoxy5G04333' => 'aox', 'Aqoxy7G00641' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3IZ0NN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4EF6AW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W9P8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79GA3M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C43NQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFCU6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G95YVJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCHK29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LU1UG8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX91RN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGB4B1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8DA0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9H7JI' => 'arhy', 'AT3G09320' => 'ath', 'AT3G60800' => 'ath', 'AT4G00840' => 'ath', 'AT4G22750' => 'ath', 'AT5G04270' => 'ath', 'ATR0090G003' => 'atr', 'ATR0559G349' => 'atr', 'ATR0680G261' => 'atr', 'ATR0810G048' => 'atr', 'Atru.chr12.831' => 'acertr', 'Atru.chr5.303' => 'acertr', 'Atru.chr5.748' => 'acertr', 'Atru.chr8.1999' => 'acertr', 'Atru.chr9.1436' => 'acertr', 'AUR62004211' => 'cqu', 'AUR62004548' => 'cqu', 'AUR62013637' => 'cqu', 'AUR62022662' => 'cqu', 'AUR62025777' => 'cqu', 'AUR62042386' => 'cqu', 'BcaB01g02310' => 'bca', 'BcaB01g06062' => 'bca', 'BcaB02g08975' => 'bca', 'BcaB02g08980' => 'bca', 'BcaC01g04228' => 'bca', 'BcaC01g06830' => 'bca', 'BcaC02g10186' => 'bca', 'BcaC02g12214' => 'bca', 'BcaC04g24101' => 'bca', 'BcaC05g29520' => 'bca', 'BcaC05g29661' => 'bca', 'BcaC06g32130' => 'bca', 'BcaC06g32131' => 'bca', 'BcaC07g40601' => 'bca', 'BcaC07g42641' => 'bca', 'BcaNung01038' => 'bca', 'BcaNung01676' => 'bca', 'BcaNung02480' => 'bca', 'BcaNung07376' => 'bca', 'BolC3t16146H' => 'bol', 'BolC3t16637H' => 'bol', 'BolC4t22257H' => 'bol', 'BolC4t24728H' => 'bol', 'BolC5t34517H' => 'bol', 'BolC7t45703H' => 'bol', 'BolC8t51166H' => 'bol', 'BolC9t53038H' => 'bol', 'BolC9t60000H' => 'bol', 'BraA01t01345Z' => 'bra', 'BraA01t01346Z' => 'bra', 'BraA01t01348Z' => 'bra', 'BraA03t12347Z' => 'bra', 'BraA03t12775Z' => 'bra', 'BraA03t14439Z' => 'bra', 'BraA04t15860Z' => 'bra', 'BraA05t19511Z' => 'bra', 'BraA05t22746Z' => 'bra', 'BraA09t35767Z' => 'bra', 'BraA09t40732Z' => 'bra', 'BraA10t45233Z' => 'bra', 'C03p38720' => 'bna', 'C03p43680' => 'bna', 'C04p06350' => 'bna', 'C04p31800' => 'bna', 'C05p58680' => 'bna', 'C07p52110' => 'bna', 'C08p35760' => 'bna', 'C09p01050' => 'bna', 'C09p72600' => 'bna', 'CAN.G106.2' => 'can', 'CAN.G1482.1' => 'can', 'CAN.G324.12' => 'can', 'CAN.G388.20' => 'can', 'CAN.G412.7' => 'can', 'CAN.G694.32' => 'can', 'CAN.G92.12' => 'can', 'CANSAT11G2353' => 'cansat', 'CANSAT21G1398' => 'cansat', 'CANSAT56G2456' => 'cansat', 'CANSAT56G3031' => 'cansat', 'CANSAT56G4539' => 'cansat', 'CARHR083680' => 'chi', 'CARHR171190' => 'chi', 'CARHR209010' => 'chi', 'CARHR229680' => 'chi', 'CARHR249490' => 'chi', 'Carub.0003s0844' => 'cru', 'Carub.0005s2755' => 'cru', 'Carub.0006s0322' => 'cru', 'Carub.0006s3586' => 'cru', 'Carub.0007s1855' => 'cru', 'Ca_07808_v3' => 'car', 'Ca_09535_v3' => 'car', 'Ca_10548_v3' => 'car', 'Ca_19913_v3' => 'car', 'Ca_19916_v3' => 'car', 'Ca_19975_v3' => 'car', 'CBR_g22876' => 'cbr', 'CBR_g22879' => 'cbr', 'CBR_g38491' => 'cbr', 'CBR_g54185' => 'cbr', 'CBR_g54190' => 'cbr', 'Cc02_g11020' => 'ccan', 'Cc02_g23920' => 'ccan', 'Cc02_g39860' => 'ccan', 'Cc02_g39870' => 'ccan', 'Cc03_g06760' => 'ccan', 'Cc06_g02450' => 'ccan', 'Cc09_g09450' => 'ccan', 'CDE02G1959' => 'cde', 'CDE04G0600' => 'cde', 'CDE07G1996' => 'cde', 'CDE07G2078' => 'cde', 'CDE11G0611' => 'cde', 'Cfa001683' => 'cfa', 'Cfa001734' => 'cfa', 'Cfa001737' => 'cfa', 'Cfa003751' => 'cfa', 'Cfa012019' => 'cfa', 'Cfa017353' => 'cfa', 'Cfa017732' => 'cfa', 'Cfa022464' => 'cfa', 'Ciclev10012400m.g' => 'ccl', 'Ciclev10021242m.g' => 'ccl', 'Ciclev10021302m.g' => 'ccl', 'Ciclev10021463m.g' => 'ccl', 'Ciclev10032359m.g' => 'ccl', 'CiPaw.01G081000' => 'cil', 'CiPaw.01G262500' => 'cil', 'CiPaw.01G269800' => 'cil', 'CiPaw.02G168400' => 'cil', 'CiPaw.05G119500' => 'cil', 'CiPaw.11G147300' => 'cil', 'ClCG01G003630' => 'cla', 'ClCG05G000510' => 'cla', 'ClCG05G002300' => 'cla', 'ClCG08G007650' => 'cla', 'ClCG10G021250' => 'cla', 'COL.COLO4_06218' => 'col', 'COL.COLO4_12538' => 'col', 'COL.COLO4_14775' => 'col', 'COL.COLO4_23875' => 'col', 'Cpa.g.sc141.16' => 'cpa', 'Cpa.g.sc169.16' => 'cpa', 'Cpa.g.sc244.4' => 'cpa', 'Cpa.g.sc244.5' => 'cpa', 'Cpa.g.sc29.87' => 'cpa', 'Cpa.g.sc53.115' => 'cpa', 'Cre03.g207502' => 'cre', 'Cre06.g277000' => 'cre', 'Cre09.g394050' => 'cre', 'CsaV3_3G007680' => 'csa', 'CsaV3_3G009710' => 'csa', 'CsaV3_3G034790' => 'csa', 'CsaV3_5G003750' => 'csa', 'CsaV3_6G036620' => 'csa', 'CSS0002288' => 'camsi', 'CSS0011250' => 'camsi', 'CSS0021619' => 'camsi', 'CSS0046701' => 'camsi', 'DCAR_006420' => 'dca', 'DCAR_006865' => 'dca', 'DCAR_008558' => 'dca', 'DCAR_028754' => 'dca', 'DCAR_028755' => 'dca', 'Dinv31218' => 'din', 'Dinv32371' => 'din', 'Dinv34250' => 'din', 'Dinv37156' => 'din', 'Dinv43704' => 'din', 'Duzib093G1811' => 'dzi', 'Duzib106G1622' => 'dzi', 'Duzib114G0504' => 'dzi', 'Duzib128G0338' => 'dzi', 'Duzib128G1577' => 'dzi', 'Duzib133G0104' => 'dzi', 'Duzib133G1080' => 'dzi', 'Duzib138G0324' => 'dzi', 'Duzib138G0394' => 'dzi', 'Duzib205G0122' => 'dzi', 'Duzib268G1020' => 'dzi', 'Duzib268G1359' => 'dzi', 'ECA232G3929' => 'eca', 'ECA236G2210' => 'eca', 'ECA236G2287' => 'eca', 'ECA240G4568' => 'eca', 'ECA247G0894' => 'eca', 'EL10Ac1g00200' => 'bvu', 'EL10Ac1g00886' => 'bvu', 'EL10As1g23091' => 'bvu', 'EL10As1g23092' => 'bvu', 'Eucgr.A01284' => 'egr', 'Eucgr.A01285' => 'egr', 'Eucgr.D02456' => 'egr', 'Eucgr.E00018' => 'egr', 'Eucgr.E01439' => 'egr', 'Eucgr.G02859' => 'egr', 'FAN01G0168' => 'fan', 'FAN01G0453' => 'fan', 'FAN01G2761' => 'fan', 'FAN02G1239' => 'fan', 'FAN03G0645' => 'fan', 'FAN03G2707' => 'fan', 'FAN03G2978' => 'fan', 'FAN04G0227' => 'fan', 'FAN06G0091' => 'fan', 'FAN06G1418' => 'fan', 'FAN06G1512' => 'fan', 'FAN06G1986' => 'fan', 'FAN06G2905' => 'fan', 'FAN06G4325' => 'fan', 'FAN08G0033' => 'fan', 'FAN09G0642' => 'fan', 'FAN10G1763' => 'fan', 'FAN10G2026' => 'fan', 'FAN10G2513' => 'fan', 'FAN10G3402' => 'fan', 'FAN10G3564' => 'fan', 'FAN10G3987' => 'fan', 'FAN13G1490' => 'fan', 'FAN14G5857' => 'fan', 'FAN18G1188' => 'fan', 'FvH4_5g00750' => 'fve', 'FvH4_6g13410' => 'fve', 'FvH4_7g11740' => 'fve', 'FvH4_7g17410' => 'fve', 'FvH4_7g18860' => 'fve', 'Glyma.01G099100' => 'gma', 'Glyma.01G142300' => 'gma', 'Glyma.03G025500' => 'gma', 'Glyma.03G069700' => 'gma', 'Glyma.03G260000' => 'gma', 'Glyma.09G269800' => 'gma', 'Glyma.10G208700' => 'gma', 'Glyma.18G220400' => 'gma', 'Glyma.20G182000' => 'gma', 'Gohir.A01G221726' => 'ghi', 'Gohir.A07G134600' => 'ghi', 'Gohir.A07G146000' => 'ghi', 'Gohir.A08G173900' => 'ghi', 'Gohir.A09G194900' => 'ghi', 'Gohir.A10G204100' => 'ghi', 'Gohir.A11G080600' => 'ghi', 'Gohir.A11G327500' => 'ghi', 'Gohir.A12G101800' => 'ghi', 'Gohir.D01G211200' => 'ghi', 'Gohir.D07G139200' => 'ghi', 'Gohir.D07G152100' => 'ghi', 'Gohir.D08G192600' => 'ghi', 'Gohir.D09G189200' => 'ghi', 'Gohir.D10G212000' => 'ghi', 'Gohir.D11G085200' => 'ghi', 'Gohir.D11G346400' => 'ghi', 'Gohir.D12G104800' => 'ghi', 'Gorai.001G151300' => 'gra', 'Gorai.001G174100' => 'gra', 'Gorai.002G257000' => 'gra', 'Gorai.004G202600' => 'gra', 'Gorai.007G090900' => 'gra', 'Gorai.007G376700' => 'gra', 'Gorai.008G114100' => 'gra', 'Gorai.011G237900' => 'gra', 'GSVIVG01005450001' => 'vvi', 'GSVIVG01016232001' => 'vvi', 'GSVIVG01026157001' => 'vvi', 'GSVIVG01027419001' => 'vvi', 'GSVIVG01027631001' => 'vvi', 'GSVIVG01034143001' => 'vvi', 'HanXRQChr03g0093921' => 'han', 'HanXRQChr04g0120001' => 'han', 'HanXRQChr04g0122561' => 'han', 'HanXRQChr09g0246851' => 'han', 'HanXRQChr10g0293311' => 'han', 'HanXRQChr13g0425231' => 'han', 'HanXRQChr16g0532571' => 'han', 'Haze_09050' => 'cav', 'Haze_15715' => 'cav', 'Haze_15716' => 'cav', 'Haze_16803' => 'cav', 'Haze_16850' => 'cav', 'Hma1.2p1_0301F.1_g118655' => 'hma', 'Hma1.2p1_0309F.1_g120590' => 'hma', 'Hma1.2p1_0936F.1_g238900' => 'hma', 'Hma1.2p1_3552F.1_g336740' => 'hma', 'HPP92_003520' => 'vpl', 'HPP92_006628' => 'vpl', 'HPP92_006645' => 'vpl', 'HPP92_014669' => 'vpl', 'HPP92_015077' => 'vpl', 'Hund16742' => 'sun', 'Hund17022' => 'sun', 'Lalb_Chr02g0152131' => 'lal', 'Lalb_Chr05g0225371' => 'lal', 'Lalb_Chr07g0189841' => 'lal', 'Lalb_Chr07g0192961' => 'lal', 'Lalb_Chr12g0208221' => 'lal', 'Lalb_Chr13g0291211' => 'lal', 'Lalb_Chr13g0291781' => 'lal', 'Lalb_Chr18g0044651' => 'lal', 'Lalb_Chr21g0313731' => 'lal', 'Lj1g0022533' => 'lja', 'Lj2A18T50' => 'lonja', 'Lj2A92G93' => 'lonja', 'Lj3A965T73' => 'lonja', 'Lj3g0000673' => 'lja', 'Lj3g0002666' => 'lja', 'Lj4g0016985' => 'lja', 'Lj5g0003625' => 'lja', 'Lj7A529G36' => 'lonja', 'Lj9A569T49' => 'lonja', 'Lj9A604T63' => 'lonja', 'Lsat_1_v5_gn_3_132060' => 'lsa', 'Lsat_1_v5_gn_4_68941' => 'lsa', 'Lsat_1_v5_gn_5_95580' => 'lsa', 'Lsat_1_v5_gn_7_161' => 'lsa', 'Lsat_1_v5_gn_7_7041' => 'lsa', 'Lsat_1_v5_gn_9_33481' => 'lsa', 'Lsat_1_v5_gn_9_68260' => 'lsa', 'Manes.01G073100' => 'mes', 'Manes.01G266300' => 'mes', 'Manes.02G033300' => 'mes', 'Manes.05G017900' => 'mes', 'Manes.05G046100' => 'mes', 'Manes.08G080900' => 'mes', 'Manes.10G049400' => 'mes', 'Mapoly0009s0186' => 'mpo', 'Mapoly0036s0118' => 'mpo', 'Mapoly0101s0046' => 'mpo', 'MBI04_g30218_MAGBIO' => 'mbi', 'MBI04_g35564_MAGBIO' => 'mbi', 'MBI12_g34011_MAGBIO' => 'mbi', 'MBI14_g04655_MAGBIO' => 'mbi', 'MCO07G653' => 'mco', 'MCO10G173' => 'mco', 'MD01G1087100' => 'mdo', 'MD01G1104200' => 'mdo', 'MD02G1205100' => 'mdo', 'MD04G1079200' => 'mdo', 'MD04G1131400' => 'mdo', 'MD07G1121600' => 'mdo', 'MD07G1157300' => 'mdo', 'MD07G1171000' => 'mdo', 'MD12G1144500' => 'mdo', 'Medtr1g094610' => 'mtr', 'Medtr4g021795' => 'mtr', 'Medtr4g023760' => 'mtr', 'Medtr7g118050' => 'mtr', 'MELO3C005582.2' => 'cme', 'MELO3C005989.2' => 'cme', 'MELO3C006192.2' => 'cme', 'MELO3C009248.2' => 'cme', 'MELO3C019817.2' => 'cme', 'Migut.B01625' => 'egut', 'Migut.B01915' => 'egut', 'Migut.F01721' => 'egut', 'Migut.J00314' => 'egut', 'MSTRG.20742' => 'ama', 'MSTRG.8134' => 'ama', 'Nitab4.5_0000096g0010' => 'nta', 'Nitab4.5_0000202g0030' => 'nta', 'Nitab4.5_0000216g0370' => 'nta', 'Nitab4.5_0000457g0230' => 'nta', 'Nitab4.5_0001702g0170' => 'nta', 'Nitab4.5_0003607g0010' => 'nta', 'Nitab4.5_0004917g0020' => 'nta', 'Nitab4.5_0007059g0010' => 'nta', 'Nitab4.5_0007184g0010' => 'nta', 'Nitab4.5_0007346g0020' => 'nta', 'Nn1g00410' => 'nnu', 'Nn1g01252' => 'nnu', 'Nn2g11168' => 'nnu', 'Nn2g13403' => 'nnu', 'Nn2g13760' => 'nnu', 'Nn4g26380' => 'nnu', 'Oeu000806.2' => 'oeu', 'Oeu005788.1' => 'oeu', 'Oeu006900.3' => 'oeu', 'Oeu007797.1' => 'oeu', 'Oeu011932.1' => 'oeu', 'Oeu022739.1' => 'oeu', 'Oeu037918.1' => 'oeu', 'Oeu055490.2' => 'oeu', 'Os01g0844400' => 'osa', 'Os02g0819100' => 'osa', 'Os03g0804300' => 'osa', 'Os05g0458000' => 'osa', 'Os07g0467800' => 'osa', 'Os12g0602200' => 'osa', 'Peaxi162Scf00013g03444' => 'pax', 'Peaxi162Scf00094g01120' => 'pax', 'Peaxi162Scf00191g01211' => 'pax', 'Peaxi162Scf00238g01110' => 'pax', 'Peaxi162Scf00330g00719' => 'pax', 'Peaxi162Scf00627g00018' => 'pax', 'PGR031G2686' => 'pgr', 'PGR042G0809' => 'pgr', 'PGR142G0193' => 'pgr', 'PGSC0003DMG400011066' => 'stu', 'PGSC0003DMG400012041' => 'stu', 'PGSC0003DMG400013678' => 'stu', 'PGSC0003DMG400023477' => 'stu', 'PGSC0003DMG400025956' => 'stu', 'PGSC0003DMG401019151' => 'stu', 'Phvul.006G116400' => 'pvu', 'Phvul.007G097300' => 'pvu', 'Phvul.010G015000' => 'pvu', 'Phvul.010G083900' => 'pvu', 'Potri.001G117100' => 'ptr', 'Potri.002G147300' => 'ptr', 'Potri.003G115600' => 'ptr', 'Potri.006G087400' => 'ptr', 'Potri.010G226100' => 'ptr', 'Potri.014G069200' => 'ptr', 'Potri.014G104000' => 'ptr', 'Potri.016G100200' => 'ptr', 'Pp3c10_20450' => 'ppa', 'Pp3c1_42400' => 'ppa', 'Pp3c3_24390' => 'ppa', 'Pp3c3_2860' => 'ppa', 'PRCOL_00003193' => 'pco', 'Prupe.2G144500' => 'ppe', 'Prupe.2G195700' => 'ppe', 'Prupe.2G209800' => 'ppe', 'Prupe.5G080000' => 'ppe', 'Prupe.6G257900' => 'ppe', 'Psat3g001160' => 'psa', 'Psat6g181880' => 'psa', 'Psat7g233720' => 'psa', 'PSO063G7587' => 'pso', 'PSO339G2145' => 'pso', 'PSO339G3369' => 'pso', 'PSO478G2747' => 'pso', 'PSO513G0140' => 'pso', 'PSO782G1614' => 'pso', 'PSO782G4889' => 'pso', 'PSO782G5485' => 'pso', 'PSO801G0241' => 'pso', 'QL07p048854' => 'qlo', 'QL08p046745' => 'qlo', 'QL08p052606' => 'qlo', 'QL08p053414' => 'qlo', 'QL08p054868' => 'qlo', 'RcHm_v2.0_Chr1g0350251' => 'rch', 'RcHm_v2.0_Chr1g0360851' => 'rch', 'RcHm_v2.0_Chr1g0362791' => 'rch', 'RcHm_v2.0_Chr3g0466281' => 'rch', 'RcHm_v2.0_Chr7g0201481' => 'rch', 'Rhsim01G0148600' => 'rsi', 'Rhsim05G0194400' => 'rsi', 'Rhsim07G0000700' => 'rsi', 'Rhsim07G0000800' => 'rsi', 'Rhsim07G0027900' => 'rsi', 'Rhsim09G0149500' => 'rsi', 'RhsimUnG0186900' => 'rsi', 'Sabra01G0089900' => 'sbr', 'Sabra02G0114700' => 'sbr', 'Sabra02G0116300' => 'sbr', 'Sabra03G0080100' => 'sbr', 'Sabra08G0024300' => 'sbr', 'Sabra10G0174300' => 'sbr', 'Sabra14G0048900' => 'sbr', 'Sabra14G0076500' => 'sbr', 'SalBow5G2513' => 'sbo', 'Sc01g0002300' => 'sci', 'Sc01g0004450' => 'sci', 'Sc06g0001680' => 'sci', 'Sc23g0003580' => 'sci', 'Sed0000913' => 'sed', 'Sed0001655' => 'sed', 'Sed0007745' => 'sed', 'Sed0010951' => 'sed', 'Sed0017599' => 'sed', 'Sed0021405' => 'sed', 'Sed0022810' => 'sed', 'SEGI_07099' => 'sgi', 'SEGI_11931' => 'sgi', 'SEGI_13187' => 'sgi', 'SEGI_29958' => 'sgi', 'SEGI_36351' => 'sgi', 'SGA_v2.0_scaffold126G33770' => 'sas', 'SGA_v2.0_scaffold153G37003' => 'sas', 'SGA_v2.0_scaffold2G01359' => 'sas', 'SGA_v2.0_scaffold5G03064' => 'sas', 'SGA_v2.0_scaffold95G28903' => 'sas', 'SHI12701' => 'shi', 'SHI26410' => 'shi', 'SHI38997' => 'shi', 'SHI53759' => 'shi', 'SHI53886' => 'shi', 'SHI54714' => 'shi', 'SMO011G0041' => 'smo', 'SMO146G0251' => 'smo', 'SMO160G0004' => 'smo', 'SMO174G0057' => 'smo', 'SMO244G0089' => 'smo', 'SMO296G0011' => 'smo', 'Solyc01g091280.3' => 'sly', 'Solyc05g047610.3' => 'sly', 'Solyc05g047640.3' => 'sly', 'Solyc05g055630.3' => 'sly', 'Solyc10g018160.2' => 'sly', 'Solyc10g084820.2' => 'sly', 'Solyc10g086565.2' => 'sly', 'Sopen01g037030' => 'spe', 'Sopen05g027920' => 'spe', 'Sopen05g034070' => 'spe', 'Sopen10g007260' => 'spe', 'Sopen10g034260' => 'spe', 'Sopen10g035950' => 'spe', 'Sp3g07710' => 'spa', 'Sp4g27420' => 'spa', 'Sp5g02450' => 'spa', 'Sp6g01280' => 'spa', 'Sp6g38480' => 'spa', 'Sp7g20780' => 'spa', 'TAR374G1413' => 'tar', 'TAR623G1777' => 'tar', 'TAR629G2370' => 'tar', 'TAR633G1759' => 'tar', 'TAR636G3387' => 'tar', 'THA.LOC104802447' => 'tha', 'THA.LOC104813916' => 'tha', 'THA.LOC104816423' => 'tha', 'THA.LOC104817246' => 'tha', 'THA.LOC104825895' => 'tha', 'Thecc.01G335200' => 'tca', 'Thecc.01G377400' => 'tca', 'Thecc.03G262200' => 'tca', 'Thecc.05G036800' => 'tca', 'Thecc.10G080500' => 'tca', 'Thecc.10G080800' => 'tca', 'Thhalv10001560m.g' => 'esa', 'Thhalv10006120m.g' => 'esa', 'Thhalv10014375m.g' => 'esa', 'Thhalv10021264m.g' => 'esa', 'Thhalv10028856m.g' => 'esa', 'TPR.G1914' => 'tpr', 'TPR.G4757' => 'tpr', 'TPR.G5595' => 'tpr', 'TWI14G0952' => 'twi', 'TWI14G1307' => 'twi', 'TWI38G2143' => 'twi', 'TWI59G0826' => 'twi', 'TWI77G0527' => 'twi', 'TWI81G0150' => 'twi', 'unitig_21.g21018' => 'ugi', 'unitig_26.g9725' => 'ugi', 'unitig_744.g24653' => 'ugi', 'unitig_749.g13778' => 'ugi', 'unitig_899.g15035' => 'ugi', 'vmacro04296' => 'vma', 'vmacro04852' => 'vma', 'vmacro13404' => 'vma', 'vmacro20169' => 'vma', 'vmacro21014' => 'vma', 'VMungo0331G0237' => 'vmu', 'VMungo0331G0706' => 'vmu', 'VMungo0331G1361' => 'vmu', 'VMungo0331G1489' => 'vmu', 'VMungo0540G1037' => 'vmu', 'VMungo0720G2487' => 'vmu', 'VMungo0720G2721' => 'vmu', 'Zm00001eb086860' => 'zma', 'Zm00001eb104760' => 'zma', 'Zm00001eb148220' => 'zma', 'Zm00001eb259030' => 'zma', 'Zm00001eb289590' => 'zma', 'Zm00001eb420150' => 'zma' ), 'gf_id' => 'HOM05D000968', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000968' ), 'data_identifier' => 'HOM05D000968', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000968', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p31690' => 'bna', 'A03p36040' => 'bna', 'A03p53730' => 'bna', 'A04p01410' => 'bna', 'A05p05420' => 'bna', 'A05p39630' => 'bna', 'A05p39640' => 'bna', 'A09p00970' => 'bna', 'A09p53060' => 'bna', 'A10p31890' => 'bna', 'Aa31LG10G15040' => 'aar', 'Aa31LG1G21090' => 'aar', 'Aa31LG1G26900' => 'aar', 'Aa31LG3G1820' => 'aar', 'Aa31LG5G1100' => 'aar', 'Aa31LG6G4740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2265' => 'aag', 'Actinidia07998' => 'ach', 'Actinidia11266' => 'ach', 'Actinidia12682' => 'ach', 'Actinidia26479' => 'ach', 'Actinidia31406' => 'ach', 'Actinidia32437' => 'ach', 'Actinidia38862' => 'ach', 'Ah.05g174230' => 'amhyb', 'Ah.05g179070' => 'amhyb', 'Ah.05g179090' => 'amhyb', 'Ah.12g059950' => 'amhyb', 'AL3G20480' => 'aly', 'AL4G44520' => 'aly', 'AL5G43110' => 'aly', 'AL6G13890' => 'aly', 'AL6G52620' => 'aly', 'AL7G30830' => 'aly', 'Aqoxy1G00899' => 'aox', 'Aqoxy5G04333' => 'aox', 'Aqoxy7G00641' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3IZ0NN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4EF6AW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W9P8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79GA3M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C43NQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFCU6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G95YVJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCHK29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LU1UG8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX91RN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGB4B1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8DA0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9H7JI' => 'arhy', 'AT3G09320' => 'ath', 'AT3G60800' => 'ath', 'AT4G00840' => 'ath', 'AT4G22750' => 'ath', 'AT5G04270' => 'ath', 'ATR0090G003' => 'atr', 'ATR0559G349' => 'atr', 'ATR0680G261' => 'atr', 'ATR0810G048' => 'atr', 'Atru.chr12.831' => 'acertr', 'Atru.chr5.303' => 'acertr', 'Atru.chr5.748' => 'acertr', 'Atru.chr8.1999' => 'acertr', 'Atru.chr9.1436' => 'acertr', 'AUR62004211' => 'cqu', 'AUR62004548' => 'cqu', 'AUR62013637' => 'cqu', 'AUR62022662' => 'cqu', 'AUR62025777' => 'cqu', 'AUR62042386' => 'cqu', 'BcaB01g02310' => 'bca', 'BcaB01g06062' => 'bca', 'BcaB02g08975' => 'bca', 'BcaB02g08980' => 'bca', 'BcaC01g04228' => 'bca', 'BcaC01g06830' => 'bca', 'BcaC02g10186' => 'bca', 'BcaC02g12214' => 'bca', 'BcaC04g24101' => 'bca', 'BcaC05g29520' => 'bca', 'BcaC05g29661' => 'bca', 'BcaC06g32130' => 'bca', 'BcaC06g32131' => 'bca', 'BcaC07g40601' => 'bca', 'BcaC07g42641' => 'bca', 'BcaNung01038' => 'bca', 'BcaNung01676' => 'bca', 'BcaNung02480' => 'bca', 'BcaNung07376' => 'bca', 'BolC3t16146H' => 'bol', 'BolC3t16637H' => 'bol', 'BolC4t22257H' => 'bol', 'BolC4t24728H' => 'bol', 'BolC5t34517H' => 'bol', 'BolC7t45703H' => 'bol', 'BolC8t51166H' => 'bol', 'BolC9t53038H' => 'bol', 'BolC9t60000H' => 'bol', 'BraA01t01345Z' => 'bra', 'BraA01t01346Z' => 'bra', 'BraA01t01348Z' => 'bra', 'BraA03t12347Z' => 'bra', 'BraA03t12775Z' => 'bra', 'BraA03t14439Z' => 'bra', 'BraA04t15860Z' => 'bra', 'BraA05t19511Z' => 'bra', 'BraA05t22746Z' => 'bra', 'BraA09t35767Z' => 'bra', 'BraA09t40732Z' => 'bra', 'BraA10t45233Z' => 'bra', 'C03p38720' => 'bna', 'C03p43680' => 'bna', 'C04p06350' => 'bna', 'C04p31800' => 'bna', 'C05p58680' => 'bna', 'C07p52110' => 'bna', 'C08p35760' => 'bna', 'C09p01050' => 'bna', 'C09p72600' => 'bna', 'CAN.G106.2' => 'can', 'CAN.G1482.1' => 'can', 'CAN.G324.12' => 'can', 'CAN.G388.20' => 'can', 'CAN.G412.7' => 'can', 'CAN.G694.32' => 'can', 'CAN.G92.12' => 'can', 'CANSAT11G2353' => 'cansat', 'CANSAT21G1398' => 'cansat', 'CANSAT56G2456' => 'cansat', 'CANSAT56G3031' => 'cansat', 'CANSAT56G4539' => 'cansat', 'CARHR083680' => 'chi', 'CARHR171190' => 'chi', 'CARHR209010' => 'chi', 'CARHR229680' => 'chi', 'CARHR249490' => 'chi', 'Carub.0003s0844' => 'cru', 'Carub.0005s2755' => 'cru', 'Carub.0006s0322' => 'cru', 'Carub.0006s3586' => 'cru', 'Carub.0007s1855' => 'cru', 'Ca_07808_v3' => 'car', 'Ca_09535_v3' => 'car', 'Ca_10548_v3' => 'car', 'Ca_19913_v3' => 'car', 'Ca_19916_v3' => 'car', 'Ca_19975_v3' => 'car', 'CBR_g22876' => 'cbr', 'CBR_g22879' => 'cbr', 'CBR_g38491' => 'cbr', 'CBR_g54185' => 'cbr', 'CBR_g54190' => 'cbr', 'Cc02_g11020' => 'ccan', 'Cc02_g23920' => 'ccan', 'Cc02_g39860' => 'ccan', 'Cc02_g39870' => 'ccan', 'Cc03_g06760' => 'ccan', 'Cc06_g02450' => 'ccan', 'Cc09_g09450' => 'ccan', 'CDE02G1959' => 'cde', 'CDE04G0600' => 'cde', 'CDE07G1996' => 'cde', 'CDE07G2078' => 'cde', 'CDE11G0611' => 'cde', 'Cfa001683' => 'cfa', 'Cfa001734' => 'cfa', 'Cfa001737' => 'cfa', 'Cfa003751' => 'cfa', 'Cfa012019' => 'cfa', 'Cfa017353' => 'cfa', 'Cfa017732' => 'cfa', 'Cfa022464' => 'cfa', 'Ciclev10012400m.g' => 'ccl', 'Ciclev10021242m.g' => 'ccl', 'Ciclev10021302m.g' => 'ccl', 'Ciclev10021463m.g' => 'ccl', 'Ciclev10032359m.g' => 'ccl', 'CiPaw.01G081000' => 'cil', 'CiPaw.01G262500' => 'cil', 'CiPaw.01G269800' => 'cil', 'CiPaw.02G168400' => 'cil', 'CiPaw.05G119500' => 'cil', 'CiPaw.11G147300' => 'cil', 'ClCG01G003630' => 'cla', 'ClCG05G000510' => 'cla', 'ClCG05G002300' => 'cla', 'ClCG08G007650' => 'cla', 'ClCG10G021250' => 'cla', 'COL.COLO4_06218' => 'col', 'COL.COLO4_12538' => 'col', 'COL.COLO4_14775' => 'col', 'COL.COLO4_23875' => 'col', 'Cpa.g.sc141.16' => 'cpa', 'Cpa.g.sc169.16' => 'cpa', 'Cpa.g.sc244.4' => 'cpa', 'Cpa.g.sc244.5' => 'cpa', 'Cpa.g.sc29.87' => 'cpa', 'Cpa.g.sc53.115' => 'cpa', 'Cre03.g207502' => 'cre', 'Cre06.g277000' => 'cre', 'Cre09.g394050' => 'cre', 'CsaV3_3G007680' => 'csa', 'CsaV3_3G009710' => 'csa', 'CsaV3_3G034790' => 'csa', 'CsaV3_5G003750' => 'csa', 'CsaV3_6G036620' => 'csa', 'CSS0002288' => 'camsi', 'CSS0011250' => 'camsi', 'CSS0021619' => 'camsi', 'CSS0046701' => 'camsi', 'DCAR_006420' => 'dca', 'DCAR_006865' => 'dca', 'DCAR_008558' => 'dca', 'DCAR_028754' => 'dca', 'DCAR_028755' => 'dca', 'Dinv31218' => 'din', 'Dinv32371' => 'din', 'Dinv34250' => 'din', 'Dinv37156' => 'din', 'Dinv43704' => 'din', 'Duzib093G1811' => 'dzi', 'Duzib106G1622' => 'dzi', 'Duzib114G0504' => 'dzi', 'Duzib128G0338' => 'dzi', 'Duzib128G1577' => 'dzi', 'Duzib133G0104' => 'dzi', 'Duzib133G1080' => 'dzi', 'Duzib138G0324' => 'dzi', 'Duzib138G0394' => 'dzi', 'Duzib205G0122' => 'dzi', 'Duzib268G1020' => 'dzi', 'Duzib268G1359' => 'dzi', 'ECA232G3929' => 'eca', 'ECA236G2210' => 'eca', 'ECA236G2287' => 'eca', 'ECA240G4568' => 'eca', 'ECA247G0894' => 'eca', 'EL10Ac1g00200' => 'bvu', 'EL10Ac1g00886' => 'bvu', 'EL10As1g23091' => 'bvu', 'EL10As1g23092' => 'bvu', 'Eucgr.A01284' => 'egr', 'Eucgr.A01285' => 'egr', 'Eucgr.D02456' => 'egr', 'Eucgr.E00018' => 'egr', 'Eucgr.E01439' => 'egr', 'Eucgr.G02859' => 'egr', 'FAN01G0168' => 'fan', 'FAN01G0453' => 'fan', 'FAN01G2761' => 'fan', 'FAN02G1239' => 'fan', 'FAN03G0645' => 'fan', 'FAN03G2707' => 'fan', 'FAN03G2978' => 'fan', 'FAN04G0227' => 'fan', 'FAN06G0091' => 'fan', 'FAN06G1418' => 'fan', 'FAN06G1512' => 'fan', 'FAN06G1986' => 'fan', 'FAN06G2905' => 'fan', 'FAN06G4325' => 'fan', 'FAN08G0033' => 'fan', 'FAN09G0642' => 'fan', 'FAN10G1763' => 'fan', 'FAN10G2026' => 'fan', 'FAN10G2513' => 'fan', 'FAN10G3402' => 'fan', 'FAN10G3564' => 'fan', 'FAN10G3987' => 'fan', 'FAN13G1490' => 'fan', 'FAN14G5857' => 'fan', 'FAN18G1188' => 'fan', 'FvH4_5g00750' => 'fve', 'FvH4_6g13410' => 'fve', 'FvH4_7g11740' => 'fve', 'FvH4_7g17410' => 'fve', 'FvH4_7g18860' => 'fve', 'Glyma.01G099100' => 'gma', 'Glyma.01G142300' => 'gma', 'Glyma.03G025500' => 'gma', 'Glyma.03G069700' => 'gma', 'Glyma.03G260000' => 'gma', 'Glyma.09G269800' => 'gma', 'Glyma.10G208700' => 'gma', 'Glyma.18G220400' => 'gma', 'Glyma.20G182000' => 'gma', 'Gohir.A01G221726' => 'ghi', 'Gohir.A07G134600' => 'ghi', 'Gohir.A07G146000' => 'ghi', 'Gohir.A08G173900' => 'ghi', 'Gohir.A09G194900' => 'ghi', 'Gohir.A10G204100' => 'ghi', 'Gohir.A11G080600' => 'ghi', 'Gohir.A11G327500' => 'ghi', 'Gohir.A12G101800' => 'ghi', 'Gohir.D01G211200' => 'ghi', 'Gohir.D07G139200' => 'ghi', 'Gohir.D07G152100' => 'ghi', 'Gohir.D08G192600' => 'ghi', 'Gohir.D09G189200' => 'ghi', 'Gohir.D10G212000' => 'ghi', 'Gohir.D11G085200' => 'ghi', 'Gohir.D11G346400' => 'ghi', 'Gohir.D12G104800' => 'ghi', 'Gorai.001G151300' => 'gra', 'Gorai.001G174100' => 'gra', 'Gorai.002G257000' => 'gra', 'Gorai.004G202600' => 'gra', 'Gorai.007G090900' => 'gra', 'Gorai.007G376700' => 'gra', 'Gorai.008G114100' => 'gra', 'Gorai.011G237900' => 'gra', 'GSVIVG01005450001' => 'vvi', 'GSVIVG01016232001' => 'vvi', 'GSVIVG01026157001' => 'vvi', 'GSVIVG01027419001' => 'vvi', 'GSVIVG01027631001' => 'vvi', 'GSVIVG01034143001' => 'vvi', 'HanXRQChr03g0093921' => 'han', 'HanXRQChr04g0120001' => 'han', 'HanXRQChr04g0122561' => 'han', 'HanXRQChr09g0246851' => 'han', 'HanXRQChr10g0293311' => 'han', 'HanXRQChr13g0425231' => 'han', 'HanXRQChr16g0532571' => 'han', 'Haze_09050' => 'cav', 'Haze_15715' => 'cav', 'Haze_15716' => 'cav', 'Haze_16803' => 'cav', 'Haze_16850' => 'cav', 'Hma1.2p1_0301F.1_g118655' => 'hma', 'Hma1.2p1_0309F.1_g120590' => 'hma', 'Hma1.2p1_0936F.1_g238900' => 'hma', 'Hma1.2p1_3552F.1_g336740' => 'hma', 'HPP92_003520' => 'vpl', 'HPP92_006628' => 'vpl', 'HPP92_006645' => 'vpl', 'HPP92_014669' => 'vpl', 'HPP92_015077' => 'vpl', 'Hund16742' => 'sun', 'Hund17022' => 'sun', 'Lalb_Chr02g0152131' => 'lal', 'Lalb_Chr05g0225371' => 'lal', 'Lalb_Chr07g0189841' => 'lal', 'Lalb_Chr07g0192961' => 'lal', 'Lalb_Chr12g0208221' => 'lal', 'Lalb_Chr13g0291211' => 'lal', 'Lalb_Chr13g0291781' => 'lal', 'Lalb_Chr18g0044651' => 'lal', 'Lalb_Chr21g0313731' => 'lal', 'Lj1g0022533' => 'lja', 'Lj2A18T50' => 'lonja', 'Lj2A92G93' => 'lonja', 'Lj3A965T73' => 'lonja', 'Lj3g0000673' => 'lja', 'Lj3g0002666' => 'lja', 'Lj4g0016985' => 'lja', 'Lj5g0003625' => 'lja', 'Lj7A529G36' => 'lonja', 'Lj9A569T49' => 'lonja', 'Lj9A604T63' => 'lonja', 'Lsat_1_v5_gn_3_132060' => 'lsa', 'Lsat_1_v5_gn_4_68941' => 'lsa', 'Lsat_1_v5_gn_5_95580' => 'lsa', 'Lsat_1_v5_gn_7_161' => 'lsa', 'Lsat_1_v5_gn_7_7041' => 'lsa', 'Lsat_1_v5_gn_9_33481' => 'lsa', 'Lsat_1_v5_gn_9_68260' => 'lsa', 'Manes.01G073100' => 'mes', 'Manes.01G266300' => 'mes', 'Manes.02G033300' => 'mes', 'Manes.05G017900' => 'mes', 'Manes.05G046100' => 'mes', 'Manes.08G080900' => 'mes', 'Manes.10G049400' => 'mes', 'Mapoly0009s0186' => 'mpo', 'Mapoly0036s0118' => 'mpo', 'Mapoly0101s0046' => 'mpo', 'MBI04_g30218_MAGBIO' => 'mbi', 'MBI04_g35564_MAGBIO' => 'mbi', 'MBI12_g34011_MAGBIO' => 'mbi', 'MBI14_g04655_MAGBIO' => 'mbi', 'MCO07G653' => 'mco', 'MCO10G173' => 'mco', 'MD01G1087100' => 'mdo', 'MD01G1104200' => 'mdo', 'MD02G1205100' => 'mdo', 'MD04G1079200' => 'mdo', 'MD04G1131400' => 'mdo', 'MD07G1121600' => 'mdo', 'MD07G1157300' => 'mdo', 'MD07G1171000' => 'mdo', 'MD12G1144500' => 'mdo', 'Medtr1g094610' => 'mtr', 'Medtr4g021795' => 'mtr', 'Medtr4g023760' => 'mtr', 'Medtr7g118050' => 'mtr', 'MELO3C005582.2' => 'cme', 'MELO3C005989.2' => 'cme', 'MELO3C006192.2' => 'cme', 'MELO3C009248.2' => 'cme', 'MELO3C019817.2' => 'cme', 'Migut.B01625' => 'egut', 'Migut.B01915' => 'egut', 'Migut.F01721' => 'egut', 'Migut.J00314' => 'egut', 'MSTRG.20742' => 'ama', 'MSTRG.8134' => 'ama', 'Nitab4.5_0000096g0010' => 'nta', 'Nitab4.5_0000202g0030' => 'nta', 'Nitab4.5_0000216g0370' => 'nta', 'Nitab4.5_0000457g0230' => 'nta', 'Nitab4.5_0001702g0170' => 'nta', 'Nitab4.5_0003607g0010' => 'nta', 'Nitab4.5_0004917g0020' => 'nta', 'Nitab4.5_0007059g0010' => 'nta', 'Nitab4.5_0007184g0010' => 'nta', 'Nitab4.5_0007346g0020' => 'nta', 'Nn1g00410' => 'nnu', 'Nn1g01252' => 'nnu', 'Nn2g11168' => 'nnu', 'Nn2g13403' => 'nnu', 'Nn2g13760' => 'nnu', 'Nn4g26380' => 'nnu', 'Oeu000806.2' => 'oeu', 'Oeu005788.1' => 'oeu', 'Oeu006900.3' => 'oeu', 'Oeu007797.1' => 'oeu', 'Oeu011932.1' => 'oeu', 'Oeu022739.1' => 'oeu', 'Oeu037918.1' => 'oeu', 'Oeu055490.2' => 'oeu', 'Os01g0844400' => 'osa', 'Os02g0819100' => 'osa', 'Os03g0804300' => 'osa', 'Os05g0458000' => 'osa', 'Os07g0467800' => 'osa', 'Os12g0602200' => 'osa', 'Peaxi162Scf00013g03444' => 'pax', 'Peaxi162Scf00094g01120' => 'pax', 'Peaxi162Scf00191g01211' => 'pax', 'Peaxi162Scf00238g01110' => 'pax', 'Peaxi162Scf00330g00719' => 'pax', 'Peaxi162Scf00627g00018' => 'pax', 'PGR031G2686' => 'pgr', 'PGR042G0809' => 'pgr', 'PGR142G0193' => 'pgr', 'PGSC0003DMG400011066' => 'stu', 'PGSC0003DMG400012041' => 'stu', 'PGSC0003DMG400013678' => 'stu', 'PGSC0003DMG400023477' => 'stu', 'PGSC0003DMG400025956' => 'stu', 'PGSC0003DMG401019151' => 'stu', 'Phvul.006G116400' => 'pvu', 'Phvul.007G097300' => 'pvu', 'Phvul.010G015000' => 'pvu', 'Phvul.010G083900' => 'pvu', 'Potri.001G117100' => 'ptr', 'Potri.002G147300' => 'ptr', 'Potri.003G115600' => 'ptr', 'Potri.006G087400' => 'ptr', 'Potri.010G226100' => 'ptr', 'Potri.014G069200' => 'ptr', 'Potri.014G104000' => 'ptr', 'Potri.016G100200' => 'ptr', 'Pp3c10_20450' => 'ppa', 'Pp3c1_42400' => 'ppa', 'Pp3c3_24390' => 'ppa', 'Pp3c3_2860' => 'ppa', 'PRCOL_00003193' => 'pco', 'Prupe.2G144500' => 'ppe', 'Prupe.2G195700' => 'ppe', 'Prupe.2G209800' => 'ppe', 'Prupe.5G080000' => 'ppe', 'Prupe.6G257900' => 'ppe', 'Psat3g001160' => 'psa', 'Psat6g181880' => 'psa', 'Psat7g233720' => 'psa', 'PSO063G7587' => 'pso', 'PSO339G2145' => 'pso', 'PSO339G3369' => 'pso', 'PSO478G2747' => 'pso', 'PSO513G0140' => 'pso', 'PSO782G1614' => 'pso', 'PSO782G4889' => 'pso', 'PSO782G5485' => 'pso', 'PSO801G0241' => 'pso', 'QL07p048854' => 'qlo', 'QL08p046745' => 'qlo', 'QL08p052606' => 'qlo', 'QL08p053414' => 'qlo', 'QL08p054868' => 'qlo', 'RcHm_v2.0_Chr1g0350251' => 'rch', 'RcHm_v2.0_Chr1g0360851' => 'rch', 'RcHm_v2.0_Chr1g0362791' => 'rch', 'RcHm_v2.0_Chr3g0466281' => 'rch', 'RcHm_v2.0_Chr7g0201481' => 'rch', 'Rhsim01G0148600' => 'rsi', 'Rhsim05G0194400' => 'rsi', 'Rhsim07G0000700' => 'rsi', 'Rhsim07G0000800' => 'rsi', 'Rhsim07G0027900' => 'rsi', 'Rhsim09G0149500' => 'rsi', 'RhsimUnG0186900' => 'rsi', 'Sabra01G0089900' => 'sbr', 'Sabra02G0114700' => 'sbr', 'Sabra02G0116300' => 'sbr', 'Sabra03G0080100' => 'sbr', 'Sabra08G0024300' => 'sbr', 'Sabra10G0174300' => 'sbr', 'Sabra14G0048900' => 'sbr', 'Sabra14G0076500' => 'sbr', 'SalBow5G2513' => 'sbo', 'Sc01g0002300' => 'sci', 'Sc01g0004450' => 'sci', 'Sc06g0001680' => 'sci', 'Sc23g0003580' => 'sci', 'Sed0000913' => 'sed', 'Sed0001655' => 'sed', 'Sed0007745' => 'sed', 'Sed0010951' => 'sed', 'Sed0017599' => 'sed', 'Sed0021405' => 'sed', 'Sed0022810' => 'sed', 'SEGI_07099' => 'sgi', 'SEGI_11931' => 'sgi', 'SEGI_13187' => 'sgi', 'SEGI_29958' => 'sgi', 'SEGI_36351' => 'sgi', 'SGA_v2.0_scaffold126G33770' => 'sas', 'SGA_v2.0_scaffold153G37003' => 'sas', 'SGA_v2.0_scaffold2G01359' => 'sas', 'SGA_v2.0_scaffold5G03064' => 'sas', 'SGA_v2.0_scaffold95G28903' => 'sas', 'SHI12701' => 'shi', 'SHI26410' => 'shi', 'SHI38997' => 'shi', 'SHI53759' => 'shi', 'SHI53886' => 'shi', 'SHI54714' => 'shi', 'SMO011G0041' => 'smo', 'SMO146G0251' => 'smo', 'SMO160G0004' => 'smo', 'SMO174G0057' => 'smo', 'SMO244G0089' => 'smo', 'SMO296G0011' => 'smo', 'Solyc01g091280.3' => 'sly', 'Solyc05g047610.3' => 'sly', 'Solyc05g047640.3' => 'sly', 'Solyc05g055630.3' => 'sly', 'Solyc10g018160.2' => 'sly', 'Solyc10g084820.2' => 'sly', 'Solyc10g086565.2' => 'sly', 'Sopen01g037030' => 'spe', 'Sopen05g027920' => 'spe', 'Sopen05g034070' => 'spe', 'Sopen10g007260' => 'spe', 'Sopen10g034260' => 'spe', 'Sopen10g035950' => 'spe', 'Sp3g07710' => 'spa', 'Sp4g27420' => 'spa', 'Sp5g02450' => 'spa', 'Sp6g01280' => 'spa', 'Sp6g38480' => 'spa', 'Sp7g20780' => 'spa', 'TAR374G1413' => 'tar', 'TAR623G1777' => 'tar', 'TAR629G2370' => 'tar', 'TAR633G1759' => 'tar', 'TAR636G3387' => 'tar', 'THA.LOC104802447' => 'tha', 'THA.LOC104813916' => 'tha', 'THA.LOC104816423' => 'tha', 'THA.LOC104817246' => 'tha', 'THA.LOC104825895' => 'tha', 'Thecc.01G335200' => 'tca', 'Thecc.01G377400' => 'tca', 'Thecc.03G262200' => 'tca', 'Thecc.05G036800' => 'tca', 'Thecc.10G080500' => 'tca', 'Thecc.10G080800' => 'tca', 'Thhalv10001560m.g' => 'esa', 'Thhalv10006120m.g' => 'esa', 'Thhalv10014375m.g' => 'esa', 'Thhalv10021264m.g' => 'esa', 'Thhalv10028856m.g' => 'esa', 'TPR.G1914' => 'tpr', 'TPR.G4757' => 'tpr', 'TPR.G5595' => 'tpr', 'TWI14G0952' => 'twi', 'TWI14G1307' => 'twi', 'TWI38G2143' => 'twi', 'TWI59G0826' => 'twi', 'TWI77G0527' => 'twi', 'TWI81G0150' => 'twi', 'unitig_21.g21018' => 'ugi', 'unitig_26.g9725' => 'ugi', 'unitig_744.g24653' => 'ugi', 'unitig_749.g13778' => 'ugi', 'unitig_899.g15035' => 'ugi', 'vmacro04296' => 'vma', 'vmacro04852' => 'vma', 'vmacro13404' => 'vma', 'vmacro20169' => 'vma', 'vmacro21014' => 'vma', 'VMungo0331G0237' => 'vmu', 'VMungo0331G0706' => 'vmu', 'VMungo0331G1361' => 'vmu', 'VMungo0331G1489' => 'vmu', 'VMungo0540G1037' => 'vmu', 'VMungo0720G2487' => 'vmu', 'VMungo0720G2721' => 'vmu', 'Zm00001eb086860' => 'zma', 'Zm00001eb104760' => 'zma', 'Zm00001eb148220' => 'zma', 'Zm00001eb259030' => 'zma', 'Zm00001eb289590' => 'zma', 'Zm00001eb420150' => 'zma' ) $gf_id = 'HOM05D000968' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000968' ) $data_identifier = 'HOM05D000968' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 19, 'bol' => (int) 9, 'bra' => (int) 12, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 5, 'ccan' => (int) 7, 'cde' => (int) 5, 'cfa' => (int) 8, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 4, 'dca' => (int) 5, 'din' => (int) 5, 'dzi' => (int) 12, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 25, 'fve' => (int) 5, 'gma' => (int) 9, 'ghi' => (int) 18, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 7, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 5, 'sun' => (int) 2, 'lal' => (int) 9, 'lja' => (int) 5, 'lonja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 9, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 2, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 3, 'stu' => (int) 6, 'pvu' => (int) 4, 'ptr' => (int) 8, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 3, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 1, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 5, 'sas' => (int) 5, 'shi' => (int) 6, 'smo' => (int) 6, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 3, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420150' $species_info = array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ) $local_species = 'cpa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000968', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p31690' => 'bna', 'A03p36040' => 'bna', 'A03p53730' => 'bna', 'A04p01410' => 'bna', 'A05p05420' => 'bna', 'A05p39630' => 'bna', 'A05p39640' => 'bna', 'A09p00970' => 'bna', 'A09p53060' => 'bna', 'A10p31890' => 'bna', 'Aa31LG10G15040' => 'aar', 'Aa31LG1G21090' => 'aar', 'Aa31LG1G26900' => 'aar', 'Aa31LG3G1820' => 'aar', 'Aa31LG5G1100' => 'aar', 'Aa31LG6G4740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2265' => 'aag', 'Actinidia07998' => 'ach', 'Actinidia11266' => 'ach', 'Actinidia12682' => 'ach', 'Actinidia26479' => 'ach', 'Actinidia31406' => 'ach', 'Actinidia32437' => 'ach', 'Actinidia38862' => 'ach', 'Ah.05g174230' => 'amhyb', 'Ah.05g179070' => 'amhyb', 'Ah.05g179090' => 'amhyb', 'Ah.12g059950' => 'amhyb', 'AL3G20480' => 'aly', 'AL4G44520' => 'aly', 'AL5G43110' => 'aly', 'AL6G13890' => 'aly', 'AL6G52620' => 'aly', 'AL7G30830' => 'aly', 'Aqoxy1G00899' => 'aox', 'Aqoxy5G04333' => 'aox', 'Aqoxy7G00641' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3IZ0NN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4EF6AW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W9P8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79GA3M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C43NQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFCU6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G95YVJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCHK29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LU1UG8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX91RN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGB4B1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8DA0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9H7JI' => 'arhy', 'AT3G09320' => 'ath', 'AT3G60800' => 'ath', 'AT4G00840' => 'ath', 'AT4G22750' => 'ath', 'AT5G04270' => 'ath', 'ATR0090G003' => 'atr', 'ATR0559G349' => 'atr', 'ATR0680G261' => 'atr', 'ATR0810G048' => 'atr', 'Atru.chr12.831' => 'acertr', 'Atru.chr5.303' => 'acertr', 'Atru.chr5.748' => 'acertr', 'Atru.chr8.1999' => 'acertr', 'Atru.chr9.1436' => 'acertr', 'AUR62004211' => 'cqu', 'AUR62004548' => 'cqu', 'AUR62013637' => 'cqu', 'AUR62022662' => 'cqu', 'AUR62025777' => 'cqu', 'AUR62042386' => 'cqu', 'BcaB01g02310' => 'bca', 'BcaB01g06062' => 'bca', 'BcaB02g08975' => 'bca', 'BcaB02g08980' => 'bca', 'BcaC01g04228' => 'bca', 'BcaC01g06830' => 'bca', 'BcaC02g10186' => 'bca', 'BcaC02g12214' => 'bca', 'BcaC04g24101' => 'bca', 'BcaC05g29520' => 'bca', 'BcaC05g29661' => 'bca', 'BcaC06g32130' => 'bca', 'BcaC06g32131' => 'bca', 'BcaC07g40601' => 'bca', 'BcaC07g42641' => 'bca', 'BcaNung01038' => 'bca', 'BcaNung01676' => 'bca', 'BcaNung02480' => 'bca', 'BcaNung07376' => 'bca', 'BolC3t16146H' => 'bol', 'BolC3t16637H' => 'bol', 'BolC4t22257H' => 'bol', 'BolC4t24728H' => 'bol', 'BolC5t34517H' => 'bol', 'BolC7t45703H' => 'bol', 'BolC8t51166H' => 'bol', 'BolC9t53038H' => 'bol', 'BolC9t60000H' => 'bol', 'BraA01t01345Z' => 'bra', 'BraA01t01346Z' => 'bra', 'BraA01t01348Z' => 'bra', 'BraA03t12347Z' => 'bra', 'BraA03t12775Z' => 'bra', 'BraA03t14439Z' => 'bra', 'BraA04t15860Z' => 'bra', 'BraA05t19511Z' => 'bra', 'BraA05t22746Z' => 'bra', 'BraA09t35767Z' => 'bra', 'BraA09t40732Z' => 'bra', 'BraA10t45233Z' => 'bra', 'C03p38720' => 'bna', 'C03p43680' => 'bna', 'C04p06350' => 'bna', 'C04p31800' => 'bna', 'C05p58680' => 'bna', 'C07p52110' => 'bna', 'C08p35760' => 'bna', 'C09p01050' => 'bna', 'C09p72600' => 'bna', 'CAN.G106.2' => 'can', 'CAN.G1482.1' => 'can', 'CAN.G324.12' => 'can', 'CAN.G388.20' => 'can', 'CAN.G412.7' => 'can', 'CAN.G694.32' => 'can', 'CAN.G92.12' => 'can', 'CANSAT11G2353' => 'cansat', 'CANSAT21G1398' => 'cansat', 'CANSAT56G2456' => 'cansat', 'CANSAT56G3031' => 'cansat', 'CANSAT56G4539' => 'cansat', 'CARHR083680' => 'chi', 'CARHR171190' => 'chi', 'CARHR209010' => 'chi', 'CARHR229680' => 'chi', 'CARHR249490' => 'chi', 'Carub.0003s0844' => 'cru', 'Carub.0005s2755' => 'cru', 'Carub.0006s0322' => 'cru', 'Carub.0006s3586' => 'cru', 'Carub.0007s1855' => 'cru', 'Ca_07808_v3' => 'car', 'Ca_09535_v3' => 'car', 'Ca_10548_v3' => 'car', 'Ca_19913_v3' => 'car', 'Ca_19916_v3' => 'car', 'Ca_19975_v3' => 'car', 'CBR_g22876' => 'cbr', 'CBR_g22879' => 'cbr', 'CBR_g38491' => 'cbr', 'CBR_g54185' => 'cbr', 'CBR_g54190' => 'cbr', 'Cc02_g11020' => 'ccan', 'Cc02_g23920' => 'ccan', 'Cc02_g39860' => 'ccan', 'Cc02_g39870' => 'ccan', 'Cc03_g06760' => 'ccan', 'Cc06_g02450' => 'ccan', 'Cc09_g09450' => 'ccan', 'CDE02G1959' => 'cde', 'CDE04G0600' => 'cde', 'CDE07G1996' => 'cde', 'CDE07G2078' => 'cde', 'CDE11G0611' => 'cde', 'Cfa001683' => 'cfa', 'Cfa001734' => 'cfa', 'Cfa001737' => 'cfa', 'Cfa003751' => 'cfa', 'Cfa012019' => 'cfa', 'Cfa017353' => 'cfa', 'Cfa017732' => 'cfa', 'Cfa022464' => 'cfa', 'Ciclev10012400m.g' => 'ccl', 'Ciclev10021242m.g' => 'ccl', 'Ciclev10021302m.g' => 'ccl', 'Ciclev10021463m.g' => 'ccl', 'Ciclev10032359m.g' => 'ccl', 'CiPaw.01G081000' => 'cil', 'CiPaw.01G262500' => 'cil', 'CiPaw.01G269800' => 'cil', 'CiPaw.02G168400' => 'cil', 'CiPaw.05G119500' => 'cil', 'CiPaw.11G147300' => 'cil', 'ClCG01G003630' => 'cla', 'ClCG05G000510' => 'cla', 'ClCG05G002300' => 'cla', 'ClCG08G007650' => 'cla', 'ClCG10G021250' => 'cla', 'COL.COLO4_06218' => 'col', 'COL.COLO4_12538' => 'col', 'COL.COLO4_14775' => 'col', 'COL.COLO4_23875' => 'col', 'Cpa.g.sc141.16' => 'cpa', 'Cpa.g.sc169.16' => 'cpa', 'Cpa.g.sc244.4' => 'cpa', 'Cpa.g.sc244.5' => 'cpa', 'Cpa.g.sc29.87' => 'cpa', 'Cpa.g.sc53.115' => 'cpa', 'Cre03.g207502' => 'cre', 'Cre06.g277000' => 'cre', 'Cre09.g394050' => 'cre', 'CsaV3_3G007680' => 'csa', 'CsaV3_3G009710' => 'csa', 'CsaV3_3G034790' => 'csa', 'CsaV3_5G003750' => 'csa', 'CsaV3_6G036620' => 'csa', 'CSS0002288' => 'camsi', 'CSS0011250' => 'camsi', 'CSS0021619' => 'camsi', 'CSS0046701' => 'camsi', 'DCAR_006420' => 'dca', 'DCAR_006865' => 'dca', 'DCAR_008558' => 'dca', 'DCAR_028754' => 'dca', 'DCAR_028755' => 'dca', 'Dinv31218' => 'din', 'Dinv32371' => 'din', 'Dinv34250' => 'din', 'Dinv37156' => 'din', 'Dinv43704' => 'din', 'Duzib093G1811' => 'dzi', 'Duzib106G1622' => 'dzi', 'Duzib114G0504' => 'dzi', 'Duzib128G0338' => 'dzi', 'Duzib128G1577' => 'dzi', 'Duzib133G0104' => 'dzi', 'Duzib133G1080' => 'dzi', 'Duzib138G0324' => 'dzi', 'Duzib138G0394' => 'dzi', 'Duzib205G0122' => 'dzi', 'Duzib268G1020' => 'dzi', 'Duzib268G1359' => 'dzi', 'ECA232G3929' => 'eca', 'ECA236G2210' => 'eca', 'ECA236G2287' => 'eca', 'ECA240G4568' => 'eca', 'ECA247G0894' => 'eca', 'EL10Ac1g00200' => 'bvu', 'EL10Ac1g00886' => 'bvu', 'EL10As1g23091' => 'bvu', 'EL10As1g23092' => 'bvu', 'Eucgr.A01284' => 'egr', 'Eucgr.A01285' => 'egr', 'Eucgr.D02456' => 'egr', 'Eucgr.E00018' => 'egr', 'Eucgr.E01439' => 'egr', 'Eucgr.G02859' => 'egr', 'FAN01G0168' => 'fan', 'FAN01G0453' => 'fan', 'FAN01G2761' => 'fan', 'FAN02G1239' => 'fan', 'FAN03G0645' => 'fan', 'FAN03G2707' => 'fan', 'FAN03G2978' => 'fan', 'FAN04G0227' => 'fan', 'FAN06G0091' => 'fan', 'FAN06G1418' => 'fan', 'FAN06G1512' => 'fan', 'FAN06G1986' => 'fan', 'FAN06G2905' => 'fan', 'FAN06G4325' => 'fan', 'FAN08G0033' => 'fan', 'FAN09G0642' => 'fan', 'FAN10G1763' => 'fan', 'FAN10G2026' => 'fan', 'FAN10G2513' => 'fan', 'FAN10G3402' => 'fan', 'FAN10G3564' => 'fan', 'FAN10G3987' => 'fan', 'FAN13G1490' => 'fan', 'FAN14G5857' => 'fan', 'FAN18G1188' => 'fan', 'FvH4_5g00750' => 'fve', 'FvH4_6g13410' => 'fve', 'FvH4_7g11740' => 'fve', 'FvH4_7g17410' => 'fve', 'FvH4_7g18860' => 'fve', 'Glyma.01G099100' => 'gma', 'Glyma.01G142300' => 'gma', 'Glyma.03G025500' => 'gma', 'Glyma.03G069700' => 'gma', 'Glyma.03G260000' => 'gma', 'Glyma.09G269800' => 'gma', 'Glyma.10G208700' => 'gma', 'Glyma.18G220400' => 'gma', 'Glyma.20G182000' => 'gma', 'Gohir.A01G221726' => 'ghi', 'Gohir.A07G134600' => 'ghi', 'Gohir.A07G146000' => 'ghi', 'Gohir.A08G173900' => 'ghi', 'Gohir.A09G194900' => 'ghi', 'Gohir.A10G204100' => 'ghi', 'Gohir.A11G080600' => 'ghi', 'Gohir.A11G327500' => 'ghi', 'Gohir.A12G101800' => 'ghi', 'Gohir.D01G211200' => 'ghi', 'Gohir.D07G139200' => 'ghi', 'Gohir.D07G152100' => 'ghi', 'Gohir.D08G192600' => 'ghi', 'Gohir.D09G189200' => 'ghi', 'Gohir.D10G212000' => 'ghi', 'Gohir.D11G085200' => 'ghi', 'Gohir.D11G346400' => 'ghi', 'Gohir.D12G104800' => 'ghi', 'Gorai.001G151300' => 'gra', 'Gorai.001G174100' => 'gra', 'Gorai.002G257000' => 'gra', 'Gorai.004G202600' => 'gra', 'Gorai.007G090900' => 'gra', 'Gorai.007G376700' => 'gra', 'Gorai.008G114100' => 'gra', 'Gorai.011G237900' => 'gra', 'GSVIVG01005450001' => 'vvi', 'GSVIVG01016232001' => 'vvi', 'GSVIVG01026157001' => 'vvi', 'GSVIVG01027419001' => 'vvi', 'GSVIVG01027631001' => 'vvi', 'GSVIVG01034143001' => 'vvi', 'HanXRQChr03g0093921' => 'han', 'HanXRQChr04g0120001' => 'han', 'HanXRQChr04g0122561' => 'han', 'HanXRQChr09g0246851' => 'han', 'HanXRQChr10g0293311' => 'han', 'HanXRQChr13g0425231' => 'han', 'HanXRQChr16g0532571' => 'han', 'Haze_09050' => 'cav', 'Haze_15715' => 'cav', 'Haze_15716' => 'cav', 'Haze_16803' => 'cav', 'Haze_16850' => 'cav', 'Hma1.2p1_0301F.1_g118655' => 'hma', 'Hma1.2p1_0309F.1_g120590' => 'hma', 'Hma1.2p1_0936F.1_g238900' => 'hma', 'Hma1.2p1_3552F.1_g336740' => 'hma', 'HPP92_003520' => 'vpl', 'HPP92_006628' => 'vpl', 'HPP92_006645' => 'vpl', 'HPP92_014669' => 'vpl', 'HPP92_015077' => 'vpl', 'Hund16742' => 'sun', 'Hund17022' => 'sun', 'Lalb_Chr02g0152131' => 'lal', 'Lalb_Chr05g0225371' => 'lal', 'Lalb_Chr07g0189841' => 'lal', 'Lalb_Chr07g0192961' => 'lal', 'Lalb_Chr12g0208221' => 'lal', 'Lalb_Chr13g0291211' => 'lal', 'Lalb_Chr13g0291781' => 'lal', 'Lalb_Chr18g0044651' => 'lal', 'Lalb_Chr21g0313731' => 'lal', 'Lj1g0022533' => 'lja', 'Lj2A18T50' => 'lonja', 'Lj2A92G93' => 'lonja', 'Lj3A965T73' => 'lonja', 'Lj3g0000673' => 'lja', 'Lj3g0002666' => 'lja', 'Lj4g0016985' => 'lja', 'Lj5g0003625' => 'lja', 'Lj7A529G36' => 'lonja', 'Lj9A569T49' => 'lonja', 'Lj9A604T63' => 'lonja', 'Lsat_1_v5_gn_3_132060' => 'lsa', 'Lsat_1_v5_gn_4_68941' => 'lsa', 'Lsat_1_v5_gn_5_95580' => 'lsa', 'Lsat_1_v5_gn_7_161' => 'lsa', 'Lsat_1_v5_gn_7_7041' => 'lsa', 'Lsat_1_v5_gn_9_33481' => 'lsa', 'Lsat_1_v5_gn_9_68260' => 'lsa', 'Manes.01G073100' => 'mes', 'Manes.01G266300' => 'mes', 'Manes.02G033300' => 'mes', 'Manes.05G017900' => 'mes', 'Manes.05G046100' => 'mes', 'Manes.08G080900' => 'mes', 'Manes.10G049400' => 'mes', 'Mapoly0009s0186' => 'mpo', 'Mapoly0036s0118' => 'mpo', 'Mapoly0101s0046' => 'mpo', 'MBI04_g30218_MAGBIO' => 'mbi', 'MBI04_g35564_MAGBIO' => 'mbi', 'MBI12_g34011_MAGBIO' => 'mbi', 'MBI14_g04655_MAGBIO' => 'mbi', 'MCO07G653' => 'mco', 'MCO10G173' => 'mco', 'MD01G1087100' => 'mdo', 'MD01G1104200' => 'mdo', 'MD02G1205100' => 'mdo', 'MD04G1079200' => 'mdo', 'MD04G1131400' => 'mdo', 'MD07G1121600' => 'mdo', 'MD07G1157300' => 'mdo', 'MD07G1171000' => 'mdo', 'MD12G1144500' => 'mdo', 'Medtr1g094610' => 'mtr', 'Medtr4g021795' => 'mtr', 'Medtr4g023760' => 'mtr', 'Medtr7g118050' => 'mtr', 'MELO3C005582.2' => 'cme', 'MELO3C005989.2' => 'cme', 'MELO3C006192.2' => 'cme', 'MELO3C009248.2' => 'cme', 'MELO3C019817.2' => 'cme', 'Migut.B01625' => 'egut', 'Migut.B01915' => 'egut', 'Migut.F01721' => 'egut', 'Migut.J00314' => 'egut', 'MSTRG.20742' => 'ama', 'MSTRG.8134' => 'ama', 'Nitab4.5_0000096g0010' => 'nta', 'Nitab4.5_0000202g0030' => 'nta', 'Nitab4.5_0000216g0370' => 'nta', 'Nitab4.5_0000457g0230' => 'nta', 'Nitab4.5_0001702g0170' => 'nta', 'Nitab4.5_0003607g0010' => 'nta', 'Nitab4.5_0004917g0020' => 'nta', 'Nitab4.5_0007059g0010' => 'nta', 'Nitab4.5_0007184g0010' => 'nta', 'Nitab4.5_0007346g0020' => 'nta', 'Nn1g00410' => 'nnu', 'Nn1g01252' => 'nnu', 'Nn2g11168' => 'nnu', 'Nn2g13403' => 'nnu', 'Nn2g13760' => 'nnu', 'Nn4g26380' => 'nnu', 'Oeu000806.2' => 'oeu', 'Oeu005788.1' => 'oeu', 'Oeu006900.3' => 'oeu', 'Oeu007797.1' => 'oeu', 'Oeu011932.1' => 'oeu', 'Oeu022739.1' => 'oeu', 'Oeu037918.1' => 'oeu', 'Oeu055490.2' => 'oeu', 'Os01g0844400' => 'osa', 'Os02g0819100' => 'osa', 'Os03g0804300' => 'osa', 'Os05g0458000' => 'osa', 'Os07g0467800' => 'osa', 'Os12g0602200' => 'osa', 'Peaxi162Scf00013g03444' => 'pax', 'Peaxi162Scf00094g01120' => 'pax', 'Peaxi162Scf00191g01211' => 'pax', 'Peaxi162Scf00238g01110' => 'pax', 'Peaxi162Scf00330g00719' => 'pax', 'Peaxi162Scf00627g00018' => 'pax', 'PGR031G2686' => 'pgr', 'PGR042G0809' => 'pgr', 'PGR142G0193' => 'pgr', 'PGSC0003DMG400011066' => 'stu', 'PGSC0003DMG400012041' => 'stu', 'PGSC0003DMG400013678' => 'stu', 'PGSC0003DMG400023477' => 'stu', 'PGSC0003DMG400025956' => 'stu', 'PGSC0003DMG401019151' => 'stu', 'Phvul.006G116400' => 'pvu', 'Phvul.007G097300' => 'pvu', 'Phvul.010G015000' => 'pvu', 'Phvul.010G083900' => 'pvu', 'Potri.001G117100' => 'ptr', 'Potri.002G147300' => 'ptr', 'Potri.003G115600' => 'ptr', 'Potri.006G087400' => 'ptr', 'Potri.010G226100' => 'ptr', 'Potri.014G069200' => 'ptr', 'Potri.014G104000' => 'ptr', 'Potri.016G100200' => 'ptr', 'Pp3c10_20450' => 'ppa', 'Pp3c1_42400' => 'ppa', 'Pp3c3_24390' => 'ppa', 'Pp3c3_2860' => 'ppa', 'PRCOL_00003193' => 'pco', 'Prupe.2G144500' => 'ppe', 'Prupe.2G195700' => 'ppe', 'Prupe.2G209800' => 'ppe', 'Prupe.5G080000' => 'ppe', 'Prupe.6G257900' => 'ppe', 'Psat3g001160' => 'psa', 'Psat6g181880' => 'psa', 'Psat7g233720' => 'psa', 'PSO063G7587' => 'pso', 'PSO339G2145' => 'pso', 'PSO339G3369' => 'pso', 'PSO478G2747' => 'pso', 'PSO513G0140' => 'pso', 'PSO782G1614' => 'pso', 'PSO782G4889' => 'pso', 'PSO782G5485' => 'pso', 'PSO801G0241' => 'pso', 'QL07p048854' => 'qlo', 'QL08p046745' => 'qlo', 'QL08p052606' => 'qlo', 'QL08p053414' => 'qlo', 'QL08p054868' => 'qlo', 'RcHm_v2.0_Chr1g0350251' => 'rch', 'RcHm_v2.0_Chr1g0360851' => 'rch', 'RcHm_v2.0_Chr1g0362791' => 'rch', 'RcHm_v2.0_Chr3g0466281' => 'rch', 'RcHm_v2.0_Chr7g0201481' => 'rch', 'Rhsim01G0148600' => 'rsi', 'Rhsim05G0194400' => 'rsi', 'Rhsim07G0000700' => 'rsi', 'Rhsim07G0000800' => 'rsi', 'Rhsim07G0027900' => 'rsi', 'Rhsim09G0149500' => 'rsi', 'RhsimUnG0186900' => 'rsi', 'Sabra01G0089900' => 'sbr', 'Sabra02G0114700' => 'sbr', 'Sabra02G0116300' => 'sbr', 'Sabra03G0080100' => 'sbr', 'Sabra08G0024300' => 'sbr', 'Sabra10G0174300' => 'sbr', 'Sabra14G0048900' => 'sbr', 'Sabra14G0076500' => 'sbr', 'SalBow5G2513' => 'sbo', 'Sc01g0002300' => 'sci', 'Sc01g0004450' => 'sci', 'Sc06g0001680' => 'sci', 'Sc23g0003580' => 'sci', 'Sed0000913' => 'sed', 'Sed0001655' => 'sed', 'Sed0007745' => 'sed', 'Sed0010951' => 'sed', 'Sed0017599' => 'sed', 'Sed0021405' => 'sed', 'Sed0022810' => 'sed', 'SEGI_07099' => 'sgi', 'SEGI_11931' => 'sgi', 'SEGI_13187' => 'sgi', 'SEGI_29958' => 'sgi', 'SEGI_36351' => 'sgi', 'SGA_v2.0_scaffold126G33770' => 'sas', 'SGA_v2.0_scaffold153G37003' => 'sas', 'SGA_v2.0_scaffold2G01359' => 'sas', 'SGA_v2.0_scaffold5G03064' => 'sas', 'SGA_v2.0_scaffold95G28903' => 'sas', 'SHI12701' => 'shi', 'SHI26410' => 'shi', 'SHI38997' => 'shi', 'SHI53759' => 'shi', 'SHI53886' => 'shi', 'SHI54714' => 'shi', 'SMO011G0041' => 'smo', 'SMO146G0251' => 'smo', 'SMO160G0004' => 'smo', 'SMO174G0057' => 'smo', 'SMO244G0089' => 'smo', 'SMO296G0011' => 'smo', 'Solyc01g091280.3' => 'sly', 'Solyc05g047610.3' => 'sly', 'Solyc05g047640.3' => 'sly', 'Solyc05g055630.3' => 'sly', 'Solyc10g018160.2' => 'sly', 'Solyc10g084820.2' => 'sly', 'Solyc10g086565.2' => 'sly', 'Sopen01g037030' => 'spe', 'Sopen05g027920' => 'spe', 'Sopen05g034070' => 'spe', 'Sopen10g007260' => 'spe', 'Sopen10g034260' => 'spe', 'Sopen10g035950' => 'spe', 'Sp3g07710' => 'spa', 'Sp4g27420' => 'spa', 'Sp5g02450' => 'spa', 'Sp6g01280' => 'spa', 'Sp6g38480' => 'spa', 'Sp7g20780' => 'spa', 'TAR374G1413' => 'tar', 'TAR623G1777' => 'tar', 'TAR629G2370' => 'tar', 'TAR633G1759' => 'tar', 'TAR636G3387' => 'tar', 'THA.LOC104802447' => 'tha', 'THA.LOC104813916' => 'tha', 'THA.LOC104816423' => 'tha', 'THA.LOC104817246' => 'tha', 'THA.LOC104825895' => 'tha', 'Thecc.01G335200' => 'tca', 'Thecc.01G377400' => 'tca', 'Thecc.03G262200' => 'tca', 'Thecc.05G036800' => 'tca', 'Thecc.10G080500' => 'tca', 'Thecc.10G080800' => 'tca', 'Thhalv10001560m.g' => 'esa', 'Thhalv10006120m.g' => 'esa', 'Thhalv10014375m.g' => 'esa', 'Thhalv10021264m.g' => 'esa', 'Thhalv10028856m.g' => 'esa', 'TPR.G1914' => 'tpr', 'TPR.G4757' => 'tpr', 'TPR.G5595' => 'tpr', 'TWI14G0952' => 'twi', 'TWI14G1307' => 'twi', 'TWI38G2143' => 'twi', 'TWI59G0826' => 'twi', 'TWI77G0527' => 'twi', 'TWI81G0150' => 'twi', 'unitig_21.g21018' => 'ugi', 'unitig_26.g9725' => 'ugi', 'unitig_744.g24653' => 'ugi', 'unitig_749.g13778' => 'ugi', 'unitig_899.g15035' => 'ugi', 'vmacro04296' => 'vma', 'vmacro04852' => 'vma', 'vmacro13404' => 'vma', 'vmacro20169' => 'vma', 'vmacro21014' => 'vma', 'VMungo0331G0237' => 'vmu', 'VMungo0331G0706' => 'vmu', 'VMungo0331G1361' => 'vmu', 'VMungo0331G1489' => 'vmu', 'VMungo0540G1037' => 'vmu', 'VMungo0720G2487' => 'vmu', 'VMungo0720G2721' => 'vmu', 'Zm00001eb086860' => 'zma', 'Zm00001eb104760' => 'zma', 'Zm00001eb148220' => 'zma', 'Zm00001eb259030' => 'zma', 'Zm00001eb289590' => 'zma', 'Zm00001eb420150' => 'zma' ), 'gf_id' => 'HOM05D000968', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000968' ), 'data_identifier' => 'HOM05D000968', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000968', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p31690' => 'bna', 'A03p36040' => 'bna', 'A03p53730' => 'bna', 'A04p01410' => 'bna', 'A05p05420' => 'bna', 'A05p39630' => 'bna', 'A05p39640' => 'bna', 'A09p00970' => 'bna', 'A09p53060' => 'bna', 'A10p31890' => 'bna', 'Aa31LG10G15040' => 'aar', 'Aa31LG1G21090' => 'aar', 'Aa31LG1G26900' => 'aar', 'Aa31LG3G1820' => 'aar', 'Aa31LG5G1100' => 'aar', 'Aa31LG6G4740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2265' => 'aag', 'Actinidia07998' => 'ach', 'Actinidia11266' => 'ach', 'Actinidia12682' => 'ach', 'Actinidia26479' => 'ach', 'Actinidia31406' => 'ach', 'Actinidia32437' => 'ach', 'Actinidia38862' => 'ach', 'Ah.05g174230' => 'amhyb', 'Ah.05g179070' => 'amhyb', 'Ah.05g179090' => 'amhyb', 'Ah.12g059950' => 'amhyb', 'AL3G20480' => 'aly', 'AL4G44520' => 'aly', 'AL5G43110' => 'aly', 'AL6G13890' => 'aly', 'AL6G52620' => 'aly', 'AL7G30830' => 'aly', 'Aqoxy1G00899' => 'aox', 'Aqoxy5G04333' => 'aox', 'Aqoxy7G00641' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3IZ0NN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4EF6AW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W9P8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79GA3M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C43NQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFCU6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G95YVJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCHK29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LU1UG8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX91RN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGB4B1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8DA0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9H7JI' => 'arhy', 'AT3G09320' => 'ath', 'AT3G60800' => 'ath', 'AT4G00840' => 'ath', 'AT4G22750' => 'ath', 'AT5G04270' => 'ath', 'ATR0090G003' => 'atr', 'ATR0559G349' => 'atr', 'ATR0680G261' => 'atr', 'ATR0810G048' => 'atr', 'Atru.chr12.831' => 'acertr', 'Atru.chr5.303' => 'acertr', 'Atru.chr5.748' => 'acertr', 'Atru.chr8.1999' => 'acertr', 'Atru.chr9.1436' => 'acertr', 'AUR62004211' => 'cqu', 'AUR62004548' => 'cqu', 'AUR62013637' => 'cqu', 'AUR62022662' => 'cqu', 'AUR62025777' => 'cqu', 'AUR62042386' => 'cqu', 'BcaB01g02310' => 'bca', 'BcaB01g06062' => 'bca', 'BcaB02g08975' => 'bca', 'BcaB02g08980' => 'bca', 'BcaC01g04228' => 'bca', 'BcaC01g06830' => 'bca', 'BcaC02g10186' => 'bca', 'BcaC02g12214' => 'bca', 'BcaC04g24101' => 'bca', 'BcaC05g29520' => 'bca', 'BcaC05g29661' => 'bca', 'BcaC06g32130' => 'bca', 'BcaC06g32131' => 'bca', 'BcaC07g40601' => 'bca', 'BcaC07g42641' => 'bca', 'BcaNung01038' => 'bca', 'BcaNung01676' => 'bca', 'BcaNung02480' => 'bca', 'BcaNung07376' => 'bca', 'BolC3t16146H' => 'bol', 'BolC3t16637H' => 'bol', 'BolC4t22257H' => 'bol', 'BolC4t24728H' => 'bol', 'BolC5t34517H' => 'bol', 'BolC7t45703H' => 'bol', 'BolC8t51166H' => 'bol', 'BolC9t53038H' => 'bol', 'BolC9t60000H' => 'bol', 'BraA01t01345Z' => 'bra', 'BraA01t01346Z' => 'bra', 'BraA01t01348Z' => 'bra', 'BraA03t12347Z' => 'bra', 'BraA03t12775Z' => 'bra', 'BraA03t14439Z' => 'bra', 'BraA04t15860Z' => 'bra', 'BraA05t19511Z' => 'bra', 'BraA05t22746Z' => 'bra', 'BraA09t35767Z' => 'bra', 'BraA09t40732Z' => 'bra', 'BraA10t45233Z' => 'bra', 'C03p38720' => 'bna', 'C03p43680' => 'bna', 'C04p06350' => 'bna', 'C04p31800' => 'bna', 'C05p58680' => 'bna', 'C07p52110' => 'bna', 'C08p35760' => 'bna', 'C09p01050' => 'bna', 'C09p72600' => 'bna', 'CAN.G106.2' => 'can', 'CAN.G1482.1' => 'can', 'CAN.G324.12' => 'can', 'CAN.G388.20' => 'can', 'CAN.G412.7' => 'can', 'CAN.G694.32' => 'can', 'CAN.G92.12' => 'can', 'CANSAT11G2353' => 'cansat', 'CANSAT21G1398' => 'cansat', 'CANSAT56G2456' => 'cansat', 'CANSAT56G3031' => 'cansat', 'CANSAT56G4539' => 'cansat', 'CARHR083680' => 'chi', 'CARHR171190' => 'chi', 'CARHR209010' => 'chi', 'CARHR229680' => 'chi', 'CARHR249490' => 'chi', 'Carub.0003s0844' => 'cru', 'Carub.0005s2755' => 'cru', 'Carub.0006s0322' => 'cru', 'Carub.0006s3586' => 'cru', 'Carub.0007s1855' => 'cru', 'Ca_07808_v3' => 'car', 'Ca_09535_v3' => 'car', 'Ca_10548_v3' => 'car', 'Ca_19913_v3' => 'car', 'Ca_19916_v3' => 'car', 'Ca_19975_v3' => 'car', 'CBR_g22876' => 'cbr', 'CBR_g22879' => 'cbr', 'CBR_g38491' => 'cbr', 'CBR_g54185' => 'cbr', 'CBR_g54190' => 'cbr', 'Cc02_g11020' => 'ccan', 'Cc02_g23920' => 'ccan', 'Cc02_g39860' => 'ccan', 'Cc02_g39870' => 'ccan', 'Cc03_g06760' => 'ccan', 'Cc06_g02450' => 'ccan', 'Cc09_g09450' => 'ccan', 'CDE02G1959' => 'cde', 'CDE04G0600' => 'cde', 'CDE07G1996' => 'cde', 'CDE07G2078' => 'cde', 'CDE11G0611' => 'cde', 'Cfa001683' => 'cfa', 'Cfa001734' => 'cfa', 'Cfa001737' => 'cfa', 'Cfa003751' => 'cfa', 'Cfa012019' => 'cfa', 'Cfa017353' => 'cfa', 'Cfa017732' => 'cfa', 'Cfa022464' => 'cfa', 'Ciclev10012400m.g' => 'ccl', 'Ciclev10021242m.g' => 'ccl', 'Ciclev10021302m.g' => 'ccl', 'Ciclev10021463m.g' => 'ccl', 'Ciclev10032359m.g' => 'ccl', 'CiPaw.01G081000' => 'cil', 'CiPaw.01G262500' => 'cil', 'CiPaw.01G269800' => 'cil', 'CiPaw.02G168400' => 'cil', 'CiPaw.05G119500' => 'cil', 'CiPaw.11G147300' => 'cil', 'ClCG01G003630' => 'cla', 'ClCG05G000510' => 'cla', 'ClCG05G002300' => 'cla', 'ClCG08G007650' => 'cla', 'ClCG10G021250' => 'cla', 'COL.COLO4_06218' => 'col', 'COL.COLO4_12538' => 'col', 'COL.COLO4_14775' => 'col', 'COL.COLO4_23875' => 'col', 'Cpa.g.sc141.16' => 'cpa', 'Cpa.g.sc169.16' => 'cpa', 'Cpa.g.sc244.4' => 'cpa', 'Cpa.g.sc244.5' => 'cpa', 'Cpa.g.sc29.87' => 'cpa', 'Cpa.g.sc53.115' => 'cpa', 'Cre03.g207502' => 'cre', 'Cre06.g277000' => 'cre', 'Cre09.g394050' => 'cre', 'CsaV3_3G007680' => 'csa', 'CsaV3_3G009710' => 'csa', 'CsaV3_3G034790' => 'csa', 'CsaV3_5G003750' => 'csa', 'CsaV3_6G036620' => 'csa', 'CSS0002288' => 'camsi', 'CSS0011250' => 'camsi', 'CSS0021619' => 'camsi', 'CSS0046701' => 'camsi', 'DCAR_006420' => 'dca', 'DCAR_006865' => 'dca', 'DCAR_008558' => 'dca', 'DCAR_028754' => 'dca', 'DCAR_028755' => 'dca', 'Dinv31218' => 'din', 'Dinv32371' => 'din', 'Dinv34250' => 'din', 'Dinv37156' => 'din', 'Dinv43704' => 'din', 'Duzib093G1811' => 'dzi', 'Duzib106G1622' => 'dzi', 'Duzib114G0504' => 'dzi', 'Duzib128G0338' => 'dzi', 'Duzib128G1577' => 'dzi', 'Duzib133G0104' => 'dzi', 'Duzib133G1080' => 'dzi', 'Duzib138G0324' => 'dzi', 'Duzib138G0394' => 'dzi', 'Duzib205G0122' => 'dzi', 'Duzib268G1020' => 'dzi', 'Duzib268G1359' => 'dzi', 'ECA232G3929' => 'eca', 'ECA236G2210' => 'eca', 'ECA236G2287' => 'eca', 'ECA240G4568' => 'eca', 'ECA247G0894' => 'eca', 'EL10Ac1g00200' => 'bvu', 'EL10Ac1g00886' => 'bvu', 'EL10As1g23091' => 'bvu', 'EL10As1g23092' => 'bvu', 'Eucgr.A01284' => 'egr', 'Eucgr.A01285' => 'egr', 'Eucgr.D02456' => 'egr', 'Eucgr.E00018' => 'egr', 'Eucgr.E01439' => 'egr', 'Eucgr.G02859' => 'egr', 'FAN01G0168' => 'fan', 'FAN01G0453' => 'fan', 'FAN01G2761' => 'fan', 'FAN02G1239' => 'fan', 'FAN03G0645' => 'fan', 'FAN03G2707' => 'fan', 'FAN03G2978' => 'fan', 'FAN04G0227' => 'fan', 'FAN06G0091' => 'fan', 'FAN06G1418' => 'fan', 'FAN06G1512' => 'fan', 'FAN06G1986' => 'fan', 'FAN06G2905' => 'fan', 'FAN06G4325' => 'fan', 'FAN08G0033' => 'fan', 'FAN09G0642' => 'fan', 'FAN10G1763' => 'fan', 'FAN10G2026' => 'fan', 'FAN10G2513' => 'fan', 'FAN10G3402' => 'fan', 'FAN10G3564' => 'fan', 'FAN10G3987' => 'fan', 'FAN13G1490' => 'fan', 'FAN14G5857' => 'fan', 'FAN18G1188' => 'fan', 'FvH4_5g00750' => 'fve', 'FvH4_6g13410' => 'fve', 'FvH4_7g11740' => 'fve', 'FvH4_7g17410' => 'fve', 'FvH4_7g18860' => 'fve', 'Glyma.01G099100' => 'gma', 'Glyma.01G142300' => 'gma', 'Glyma.03G025500' => 'gma', 'Glyma.03G069700' => 'gma', 'Glyma.03G260000' => 'gma', 'Glyma.09G269800' => 'gma', 'Glyma.10G208700' => 'gma', 'Glyma.18G220400' => 'gma', 'Glyma.20G182000' => 'gma', 'Gohir.A01G221726' => 'ghi', 'Gohir.A07G134600' => 'ghi', 'Gohir.A07G146000' => 'ghi', 'Gohir.A08G173900' => 'ghi', 'Gohir.A09G194900' => 'ghi', 'Gohir.A10G204100' => 'ghi', 'Gohir.A11G080600' => 'ghi', 'Gohir.A11G327500' => 'ghi', 'Gohir.A12G101800' => 'ghi', 'Gohir.D01G211200' => 'ghi', 'Gohir.D07G139200' => 'ghi', 'Gohir.D07G152100' => 'ghi', 'Gohir.D08G192600' => 'ghi', 'Gohir.D09G189200' => 'ghi', 'Gohir.D10G212000' => 'ghi', 'Gohir.D11G085200' => 'ghi', 'Gohir.D11G346400' => 'ghi', 'Gohir.D12G104800' => 'ghi', 'Gorai.001G151300' => 'gra', 'Gorai.001G174100' => 'gra', 'Gorai.002G257000' => 'gra', 'Gorai.004G202600' => 'gra', 'Gorai.007G090900' => 'gra', 'Gorai.007G376700' => 'gra', 'Gorai.008G114100' => 'gra', 'Gorai.011G237900' => 'gra', 'GSVIVG01005450001' => 'vvi', 'GSVIVG01016232001' => 'vvi', 'GSVIVG01026157001' => 'vvi', 'GSVIVG01027419001' => 'vvi', 'GSVIVG01027631001' => 'vvi', 'GSVIVG01034143001' => 'vvi', 'HanXRQChr03g0093921' => 'han', 'HanXRQChr04g0120001' => 'han', 'HanXRQChr04g0122561' => 'han', 'HanXRQChr09g0246851' => 'han', 'HanXRQChr10g0293311' => 'han', 'HanXRQChr13g0425231' => 'han', 'HanXRQChr16g0532571' => 'han', 'Haze_09050' => 'cav', 'Haze_15715' => 'cav', 'Haze_15716' => 'cav', 'Haze_16803' => 'cav', 'Haze_16850' => 'cav', 'Hma1.2p1_0301F.1_g118655' => 'hma', 'Hma1.2p1_0309F.1_g120590' => 'hma', 'Hma1.2p1_0936F.1_g238900' => 'hma', 'Hma1.2p1_3552F.1_g336740' => 'hma', 'HPP92_003520' => 'vpl', 'HPP92_006628' => 'vpl', 'HPP92_006645' => 'vpl', 'HPP92_014669' => 'vpl', 'HPP92_015077' => 'vpl', 'Hund16742' => 'sun', 'Hund17022' => 'sun', 'Lalb_Chr02g0152131' => 'lal', 'Lalb_Chr05g0225371' => 'lal', 'Lalb_Chr07g0189841' => 'lal', 'Lalb_Chr07g0192961' => 'lal', 'Lalb_Chr12g0208221' => 'lal', 'Lalb_Chr13g0291211' => 'lal', 'Lalb_Chr13g0291781' => 'lal', 'Lalb_Chr18g0044651' => 'lal', 'Lalb_Chr21g0313731' => 'lal', 'Lj1g0022533' => 'lja', 'Lj2A18T50' => 'lonja', 'Lj2A92G93' => 'lonja', 'Lj3A965T73' => 'lonja', 'Lj3g0000673' => 'lja', 'Lj3g0002666' => 'lja', 'Lj4g0016985' => 'lja', 'Lj5g0003625' => 'lja', 'Lj7A529G36' => 'lonja', 'Lj9A569T49' => 'lonja', 'Lj9A604T63' => 'lonja', 'Lsat_1_v5_gn_3_132060' => 'lsa', 'Lsat_1_v5_gn_4_68941' => 'lsa', 'Lsat_1_v5_gn_5_95580' => 'lsa', 'Lsat_1_v5_gn_7_161' => 'lsa', 'Lsat_1_v5_gn_7_7041' => 'lsa', 'Lsat_1_v5_gn_9_33481' => 'lsa', 'Lsat_1_v5_gn_9_68260' => 'lsa', 'Manes.01G073100' => 'mes', 'Manes.01G266300' => 'mes', 'Manes.02G033300' => 'mes', 'Manes.05G017900' => 'mes', 'Manes.05G046100' => 'mes', 'Manes.08G080900' => 'mes', 'Manes.10G049400' => 'mes', 'Mapoly0009s0186' => 'mpo', 'Mapoly0036s0118' => 'mpo', 'Mapoly0101s0046' => 'mpo', 'MBI04_g30218_MAGBIO' => 'mbi', 'MBI04_g35564_MAGBIO' => 'mbi', 'MBI12_g34011_MAGBIO' => 'mbi', 'MBI14_g04655_MAGBIO' => 'mbi', 'MCO07G653' => 'mco', 'MCO10G173' => 'mco', 'MD01G1087100' => 'mdo', 'MD01G1104200' => 'mdo', 'MD02G1205100' => 'mdo', 'MD04G1079200' => 'mdo', 'MD04G1131400' => 'mdo', 'MD07G1121600' => 'mdo', 'MD07G1157300' => 'mdo', 'MD07G1171000' => 'mdo', 'MD12G1144500' => 'mdo', 'Medtr1g094610' => 'mtr', 'Medtr4g021795' => 'mtr', 'Medtr4g023760' => 'mtr', 'Medtr7g118050' => 'mtr', 'MELO3C005582.2' => 'cme', 'MELO3C005989.2' => 'cme', 'MELO3C006192.2' => 'cme', 'MELO3C009248.2' => 'cme', 'MELO3C019817.2' => 'cme', 'Migut.B01625' => 'egut', 'Migut.B01915' => 'egut', 'Migut.F01721' => 'egut', 'Migut.J00314' => 'egut', 'MSTRG.20742' => 'ama', 'MSTRG.8134' => 'ama', 'Nitab4.5_0000096g0010' => 'nta', 'Nitab4.5_0000202g0030' => 'nta', 'Nitab4.5_0000216g0370' => 'nta', 'Nitab4.5_0000457g0230' => 'nta', 'Nitab4.5_0001702g0170' => 'nta', 'Nitab4.5_0003607g0010' => 'nta', 'Nitab4.5_0004917g0020' => 'nta', 'Nitab4.5_0007059g0010' => 'nta', 'Nitab4.5_0007184g0010' => 'nta', 'Nitab4.5_0007346g0020' => 'nta', 'Nn1g00410' => 'nnu', 'Nn1g01252' => 'nnu', 'Nn2g11168' => 'nnu', 'Nn2g13403' => 'nnu', 'Nn2g13760' => 'nnu', 'Nn4g26380' => 'nnu', 'Oeu000806.2' => 'oeu', 'Oeu005788.1' => 'oeu', 'Oeu006900.3' => 'oeu', 'Oeu007797.1' => 'oeu', 'Oeu011932.1' => 'oeu', 'Oeu022739.1' => 'oeu', 'Oeu037918.1' => 'oeu', 'Oeu055490.2' => 'oeu', 'Os01g0844400' => 'osa', 'Os02g0819100' => 'osa', 'Os03g0804300' => 'osa', 'Os05g0458000' => 'osa', 'Os07g0467800' => 'osa', 'Os12g0602200' => 'osa', 'Peaxi162Scf00013g03444' => 'pax', 'Peaxi162Scf00094g01120' => 'pax', 'Peaxi162Scf00191g01211' => 'pax', 'Peaxi162Scf00238g01110' => 'pax', 'Peaxi162Scf00330g00719' => 'pax', 'Peaxi162Scf00627g00018' => 'pax', 'PGR031G2686' => 'pgr', 'PGR042G0809' => 'pgr', 'PGR142G0193' => 'pgr', 'PGSC0003DMG400011066' => 'stu', 'PGSC0003DMG400012041' => 'stu', 'PGSC0003DMG400013678' => 'stu', 'PGSC0003DMG400023477' => 'stu', 'PGSC0003DMG400025956' => 'stu', 'PGSC0003DMG401019151' => 'stu', 'Phvul.006G116400' => 'pvu', 'Phvul.007G097300' => 'pvu', 'Phvul.010G015000' => 'pvu', 'Phvul.010G083900' => 'pvu', 'Potri.001G117100' => 'ptr', 'Potri.002G147300' => 'ptr', 'Potri.003G115600' => 'ptr', 'Potri.006G087400' => 'ptr', 'Potri.010G226100' => 'ptr', 'Potri.014G069200' => 'ptr', 'Potri.014G104000' => 'ptr', 'Potri.016G100200' => 'ptr', 'Pp3c10_20450' => 'ppa', 'Pp3c1_42400' => 'ppa', 'Pp3c3_24390' => 'ppa', 'Pp3c3_2860' => 'ppa', 'PRCOL_00003193' => 'pco', 'Prupe.2G144500' => 'ppe', 'Prupe.2G195700' => 'ppe', 'Prupe.2G209800' => 'ppe', 'Prupe.5G080000' => 'ppe', 'Prupe.6G257900' => 'ppe', 'Psat3g001160' => 'psa', 'Psat6g181880' => 'psa', 'Psat7g233720' => 'psa', 'PSO063G7587' => 'pso', 'PSO339G2145' => 'pso', 'PSO339G3369' => 'pso', 'PSO478G2747' => 'pso', 'PSO513G0140' => 'pso', 'PSO782G1614' => 'pso', 'PSO782G4889' => 'pso', 'PSO782G5485' => 'pso', 'PSO801G0241' => 'pso', 'QL07p048854' => 'qlo', 'QL08p046745' => 'qlo', 'QL08p052606' => 'qlo', 'QL08p053414' => 'qlo', 'QL08p054868' => 'qlo', 'RcHm_v2.0_Chr1g0350251' => 'rch', 'RcHm_v2.0_Chr1g0360851' => 'rch', 'RcHm_v2.0_Chr1g0362791' => 'rch', 'RcHm_v2.0_Chr3g0466281' => 'rch', 'RcHm_v2.0_Chr7g0201481' => 'rch', 'Rhsim01G0148600' => 'rsi', 'Rhsim05G0194400' => 'rsi', 'Rhsim07G0000700' => 'rsi', 'Rhsim07G0000800' => 'rsi', 'Rhsim07G0027900' => 'rsi', 'Rhsim09G0149500' => 'rsi', 'RhsimUnG0186900' => 'rsi', 'Sabra01G0089900' => 'sbr', 'Sabra02G0114700' => 'sbr', 'Sabra02G0116300' => 'sbr', 'Sabra03G0080100' => 'sbr', 'Sabra08G0024300' => 'sbr', 'Sabra10G0174300' => 'sbr', 'Sabra14G0048900' => 'sbr', 'Sabra14G0076500' => 'sbr', 'SalBow5G2513' => 'sbo', 'Sc01g0002300' => 'sci', 'Sc01g0004450' => 'sci', 'Sc06g0001680' => 'sci', 'Sc23g0003580' => 'sci', 'Sed0000913' => 'sed', 'Sed0001655' => 'sed', 'Sed0007745' => 'sed', 'Sed0010951' => 'sed', 'Sed0017599' => 'sed', 'Sed0021405' => 'sed', 'Sed0022810' => 'sed', 'SEGI_07099' => 'sgi', 'SEGI_11931' => 'sgi', 'SEGI_13187' => 'sgi', 'SEGI_29958' => 'sgi', 'SEGI_36351' => 'sgi', 'SGA_v2.0_scaffold126G33770' => 'sas', 'SGA_v2.0_scaffold153G37003' => 'sas', 'SGA_v2.0_scaffold2G01359' => 'sas', 'SGA_v2.0_scaffold5G03064' => 'sas', 'SGA_v2.0_scaffold95G28903' => 'sas', 'SHI12701' => 'shi', 'SHI26410' => 'shi', 'SHI38997' => 'shi', 'SHI53759' => 'shi', 'SHI53886' => 'shi', 'SHI54714' => 'shi', 'SMO011G0041' => 'smo', 'SMO146G0251' => 'smo', 'SMO160G0004' => 'smo', 'SMO174G0057' => 'smo', 'SMO244G0089' => 'smo', 'SMO296G0011' => 'smo', 'Solyc01g091280.3' => 'sly', 'Solyc05g047610.3' => 'sly', 'Solyc05g047640.3' => 'sly', 'Solyc05g055630.3' => 'sly', 'Solyc10g018160.2' => 'sly', 'Solyc10g084820.2' => 'sly', 'Solyc10g086565.2' => 'sly', 'Sopen01g037030' => 'spe', 'Sopen05g027920' => 'spe', 'Sopen05g034070' => 'spe', 'Sopen10g007260' => 'spe', 'Sopen10g034260' => 'spe', 'Sopen10g035950' => 'spe', 'Sp3g07710' => 'spa', 'Sp4g27420' => 'spa', 'Sp5g02450' => 'spa', 'Sp6g01280' => 'spa', 'Sp6g38480' => 'spa', 'Sp7g20780' => 'spa', 'TAR374G1413' => 'tar', 'TAR623G1777' => 'tar', 'TAR629G2370' => 'tar', 'TAR633G1759' => 'tar', 'TAR636G3387' => 'tar', 'THA.LOC104802447' => 'tha', 'THA.LOC104813916' => 'tha', 'THA.LOC104816423' => 'tha', 'THA.LOC104817246' => 'tha', 'THA.LOC104825895' => 'tha', 'Thecc.01G335200' => 'tca', 'Thecc.01G377400' => 'tca', 'Thecc.03G262200' => 'tca', 'Thecc.05G036800' => 'tca', 'Thecc.10G080500' => 'tca', 'Thecc.10G080800' => 'tca', 'Thhalv10001560m.g' => 'esa', 'Thhalv10006120m.g' => 'esa', 'Thhalv10014375m.g' => 'esa', 'Thhalv10021264m.g' => 'esa', 'Thhalv10028856m.g' => 'esa', 'TPR.G1914' => 'tpr', 'TPR.G4757' => 'tpr', 'TPR.G5595' => 'tpr', 'TWI14G0952' => 'twi', 'TWI14G1307' => 'twi', 'TWI38G2143' => 'twi', 'TWI59G0826' => 'twi', 'TWI77G0527' => 'twi', 'TWI81G0150' => 'twi', 'unitig_21.g21018' => 'ugi', 'unitig_26.g9725' => 'ugi', 'unitig_744.g24653' => 'ugi', 'unitig_749.g13778' => 'ugi', 'unitig_899.g15035' => 'ugi', 'vmacro04296' => 'vma', 'vmacro04852' => 'vma', 'vmacro13404' => 'vma', 'vmacro20169' => 'vma', 'vmacro21014' => 'vma', 'VMungo0331G0237' => 'vmu', 'VMungo0331G0706' => 'vmu', 'VMungo0331G1361' => 'vmu', 'VMungo0331G1489' => 'vmu', 'VMungo0540G1037' => 'vmu', 'VMungo0720G2487' => 'vmu', 'VMungo0720G2721' => 'vmu', 'Zm00001eb086860' => 'zma', 'Zm00001eb104760' => 'zma', 'Zm00001eb148220' => 'zma', 'Zm00001eb259030' => 'zma', 'Zm00001eb289590' => 'zma', 'Zm00001eb420150' => 'zma' ) $gf_id = 'HOM05D000968' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000968' ) $data_identifier = 'HOM05D000968' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 19, 'bol' => (int) 9, 'bra' => (int) 12, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 5, 'ccan' => (int) 7, 'cde' => (int) 5, 'cfa' => (int) 8, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 4, 'dca' => (int) 5, 'din' => (int) 5, 'dzi' => (int) 12, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 25, 'fve' => (int) 5, 'gma' => (int) 9, 'ghi' => (int) 18, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 7, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 5, 'sun' => (int) 2, 'lal' => (int) 9, 'lja' => (int) 5, 'lonja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 9, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 2, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 3, 'stu' => (int) 6, 'pvu' => (int) 4, 'ptr' => (int) 8, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 3, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 1, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 5, 'sas' => (int) 5, 'shi' => (int) 6, 'smo' => (int) 6, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 3, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420150' $species_info = array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ) $local_species = 'cfa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000968', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p31690' => 'bna', 'A03p36040' => 'bna', 'A03p53730' => 'bna', 'A04p01410' => 'bna', 'A05p05420' => 'bna', 'A05p39630' => 'bna', 'A05p39640' => 'bna', 'A09p00970' => 'bna', 'A09p53060' => 'bna', 'A10p31890' => 'bna', 'Aa31LG10G15040' => 'aar', 'Aa31LG1G21090' => 'aar', 'Aa31LG1G26900' => 'aar', 'Aa31LG3G1820' => 'aar', 'Aa31LG5G1100' => 'aar', 'Aa31LG6G4740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2265' => 'aag', 'Actinidia07998' => 'ach', 'Actinidia11266' => 'ach', 'Actinidia12682' => 'ach', 'Actinidia26479' => 'ach', 'Actinidia31406' => 'ach', 'Actinidia32437' => 'ach', 'Actinidia38862' => 'ach', 'Ah.05g174230' => 'amhyb', 'Ah.05g179070' => 'amhyb', 'Ah.05g179090' => 'amhyb', 'Ah.12g059950' => 'amhyb', 'AL3G20480' => 'aly', 'AL4G44520' => 'aly', 'AL5G43110' => 'aly', 'AL6G13890' => 'aly', 'AL6G52620' => 'aly', 'AL7G30830' => 'aly', 'Aqoxy1G00899' => 'aox', 'Aqoxy5G04333' => 'aox', 'Aqoxy7G00641' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3IZ0NN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4EF6AW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W9P8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79GA3M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C43NQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFCU6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G95YVJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCHK29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LU1UG8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX91RN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGB4B1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8DA0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9H7JI' => 'arhy', 'AT3G09320' => 'ath', 'AT3G60800' => 'ath', 'AT4G00840' => 'ath', 'AT4G22750' => 'ath', 'AT5G04270' => 'ath', 'ATR0090G003' => 'atr', 'ATR0559G349' => 'atr', 'ATR0680G261' => 'atr', 'ATR0810G048' => 'atr', 'Atru.chr12.831' => 'acertr', 'Atru.chr5.303' => 'acertr', 'Atru.chr5.748' => 'acertr', 'Atru.chr8.1999' => 'acertr', 'Atru.chr9.1436' => 'acertr', 'AUR62004211' => 'cqu', 'AUR62004548' => 'cqu', 'AUR62013637' => 'cqu', 'AUR62022662' => 'cqu', 'AUR62025777' => 'cqu', 'AUR62042386' => 'cqu', 'BcaB01g02310' => 'bca', 'BcaB01g06062' => 'bca', 'BcaB02g08975' => 'bca', 'BcaB02g08980' => 'bca', 'BcaC01g04228' => 'bca', 'BcaC01g06830' => 'bca', 'BcaC02g10186' => 'bca', 'BcaC02g12214' => 'bca', 'BcaC04g24101' => 'bca', 'BcaC05g29520' => 'bca', 'BcaC05g29661' => 'bca', 'BcaC06g32130' => 'bca', 'BcaC06g32131' => 'bca', 'BcaC07g40601' => 'bca', 'BcaC07g42641' => 'bca', 'BcaNung01038' => 'bca', 'BcaNung01676' => 'bca', 'BcaNung02480' => 'bca', 'BcaNung07376' => 'bca', 'BolC3t16146H' => 'bol', 'BolC3t16637H' => 'bol', 'BolC4t22257H' => 'bol', 'BolC4t24728H' => 'bol', 'BolC5t34517H' => 'bol', 'BolC7t45703H' => 'bol', 'BolC8t51166H' => 'bol', 'BolC9t53038H' => 'bol', 'BolC9t60000H' => 'bol', 'BraA01t01345Z' => 'bra', 'BraA01t01346Z' => 'bra', 'BraA01t01348Z' => 'bra', 'BraA03t12347Z' => 'bra', 'BraA03t12775Z' => 'bra', 'BraA03t14439Z' => 'bra', 'BraA04t15860Z' => 'bra', 'BraA05t19511Z' => 'bra', 'BraA05t22746Z' => 'bra', 'BraA09t35767Z' => 'bra', 'BraA09t40732Z' => 'bra', 'BraA10t45233Z' => 'bra', 'C03p38720' => 'bna', 'C03p43680' => 'bna', 'C04p06350' => 'bna', 'C04p31800' => 'bna', 'C05p58680' => 'bna', 'C07p52110' => 'bna', 'C08p35760' => 'bna', 'C09p01050' => 'bna', 'C09p72600' => 'bna', 'CAN.G106.2' => 'can', 'CAN.G1482.1' => 'can', 'CAN.G324.12' => 'can', 'CAN.G388.20' => 'can', 'CAN.G412.7' => 'can', 'CAN.G694.32' => 'can', 'CAN.G92.12' => 'can', 'CANSAT11G2353' => 'cansat', 'CANSAT21G1398' => 'cansat', 'CANSAT56G2456' => 'cansat', 'CANSAT56G3031' => 'cansat', 'CANSAT56G4539' => 'cansat', 'CARHR083680' => 'chi', 'CARHR171190' => 'chi', 'CARHR209010' => 'chi', 'CARHR229680' => 'chi', 'CARHR249490' => 'chi', 'Carub.0003s0844' => 'cru', 'Carub.0005s2755' => 'cru', 'Carub.0006s0322' => 'cru', 'Carub.0006s3586' => 'cru', 'Carub.0007s1855' => 'cru', 'Ca_07808_v3' => 'car', 'Ca_09535_v3' => 'car', 'Ca_10548_v3' => 'car', 'Ca_19913_v3' => 'car', 'Ca_19916_v3' => 'car', 'Ca_19975_v3' => 'car', 'CBR_g22876' => 'cbr', 'CBR_g22879' => 'cbr', 'CBR_g38491' => 'cbr', 'CBR_g54185' => 'cbr', 'CBR_g54190' => 'cbr', 'Cc02_g11020' => 'ccan', 'Cc02_g23920' => 'ccan', 'Cc02_g39860' => 'ccan', 'Cc02_g39870' => 'ccan', 'Cc03_g06760' => 'ccan', 'Cc06_g02450' => 'ccan', 'Cc09_g09450' => 'ccan', 'CDE02G1959' => 'cde', 'CDE04G0600' => 'cde', 'CDE07G1996' => 'cde', 'CDE07G2078' => 'cde', 'CDE11G0611' => 'cde', 'Cfa001683' => 'cfa', 'Cfa001734' => 'cfa', 'Cfa001737' => 'cfa', 'Cfa003751' => 'cfa', 'Cfa012019' => 'cfa', 'Cfa017353' => 'cfa', 'Cfa017732' => 'cfa', 'Cfa022464' => 'cfa', 'Ciclev10012400m.g' => 'ccl', 'Ciclev10021242m.g' => 'ccl', 'Ciclev10021302m.g' => 'ccl', 'Ciclev10021463m.g' => 'ccl', 'Ciclev10032359m.g' => 'ccl', 'CiPaw.01G081000' => 'cil', 'CiPaw.01G262500' => 'cil', 'CiPaw.01G269800' => 'cil', 'CiPaw.02G168400' => 'cil', 'CiPaw.05G119500' => 'cil', 'CiPaw.11G147300' => 'cil', 'ClCG01G003630' => 'cla', 'ClCG05G000510' => 'cla', 'ClCG05G002300' => 'cla', 'ClCG08G007650' => 'cla', 'ClCG10G021250' => 'cla', 'COL.COLO4_06218' => 'col', 'COL.COLO4_12538' => 'col', 'COL.COLO4_14775' => 'col', 'COL.COLO4_23875' => 'col', 'Cpa.g.sc141.16' => 'cpa', 'Cpa.g.sc169.16' => 'cpa', 'Cpa.g.sc244.4' => 'cpa', 'Cpa.g.sc244.5' => 'cpa', 'Cpa.g.sc29.87' => 'cpa', 'Cpa.g.sc53.115' => 'cpa', 'Cre03.g207502' => 'cre', 'Cre06.g277000' => 'cre', 'Cre09.g394050' => 'cre', 'CsaV3_3G007680' => 'csa', 'CsaV3_3G009710' => 'csa', 'CsaV3_3G034790' => 'csa', 'CsaV3_5G003750' => 'csa', 'CsaV3_6G036620' => 'csa', 'CSS0002288' => 'camsi', 'CSS0011250' => 'camsi', 'CSS0021619' => 'camsi', 'CSS0046701' => 'camsi', 'DCAR_006420' => 'dca', 'DCAR_006865' => 'dca', 'DCAR_008558' => 'dca', 'DCAR_028754' => 'dca', 'DCAR_028755' => 'dca', 'Dinv31218' => 'din', 'Dinv32371' => 'din', 'Dinv34250' => 'din', 'Dinv37156' => 'din', 'Dinv43704' => 'din', 'Duzib093G1811' => 'dzi', 'Duzib106G1622' => 'dzi', 'Duzib114G0504' => 'dzi', 'Duzib128G0338' => 'dzi', 'Duzib128G1577' => 'dzi', 'Duzib133G0104' => 'dzi', 'Duzib133G1080' => 'dzi', 'Duzib138G0324' => 'dzi', 'Duzib138G0394' => 'dzi', 'Duzib205G0122' => 'dzi', 'Duzib268G1020' => 'dzi', 'Duzib268G1359' => 'dzi', 'ECA232G3929' => 'eca', 'ECA236G2210' => 'eca', 'ECA236G2287' => 'eca', 'ECA240G4568' => 'eca', 'ECA247G0894' => 'eca', 'EL10Ac1g00200' => 'bvu', 'EL10Ac1g00886' => 'bvu', 'EL10As1g23091' => 'bvu', 'EL10As1g23092' => 'bvu', 'Eucgr.A01284' => 'egr', 'Eucgr.A01285' => 'egr', 'Eucgr.D02456' => 'egr', 'Eucgr.E00018' => 'egr', 'Eucgr.E01439' => 'egr', 'Eucgr.G02859' => 'egr', 'FAN01G0168' => 'fan', 'FAN01G0453' => 'fan', 'FAN01G2761' => 'fan', 'FAN02G1239' => 'fan', 'FAN03G0645' => 'fan', 'FAN03G2707' => 'fan', 'FAN03G2978' => 'fan', 'FAN04G0227' => 'fan', 'FAN06G0091' => 'fan', 'FAN06G1418' => 'fan', 'FAN06G1512' => 'fan', 'FAN06G1986' => 'fan', 'FAN06G2905' => 'fan', 'FAN06G4325' => 'fan', 'FAN08G0033' => 'fan', 'FAN09G0642' => 'fan', 'FAN10G1763' => 'fan', 'FAN10G2026' => 'fan', 'FAN10G2513' => 'fan', 'FAN10G3402' => 'fan', 'FAN10G3564' => 'fan', 'FAN10G3987' => 'fan', 'FAN13G1490' => 'fan', 'FAN14G5857' => 'fan', 'FAN18G1188' => 'fan', 'FvH4_5g00750' => 'fve', 'FvH4_6g13410' => 'fve', 'FvH4_7g11740' => 'fve', 'FvH4_7g17410' => 'fve', 'FvH4_7g18860' => 'fve', 'Glyma.01G099100' => 'gma', 'Glyma.01G142300' => 'gma', 'Glyma.03G025500' => 'gma', 'Glyma.03G069700' => 'gma', 'Glyma.03G260000' => 'gma', 'Glyma.09G269800' => 'gma', 'Glyma.10G208700' => 'gma', 'Glyma.18G220400' => 'gma', 'Glyma.20G182000' => 'gma', 'Gohir.A01G221726' => 'ghi', 'Gohir.A07G134600' => 'ghi', 'Gohir.A07G146000' => 'ghi', 'Gohir.A08G173900' => 'ghi', 'Gohir.A09G194900' => 'ghi', 'Gohir.A10G204100' => 'ghi', 'Gohir.A11G080600' => 'ghi', 'Gohir.A11G327500' => 'ghi', 'Gohir.A12G101800' => 'ghi', 'Gohir.D01G211200' => 'ghi', 'Gohir.D07G139200' => 'ghi', 'Gohir.D07G152100' => 'ghi', 'Gohir.D08G192600' => 'ghi', 'Gohir.D09G189200' => 'ghi', 'Gohir.D10G212000' => 'ghi', 'Gohir.D11G085200' => 'ghi', 'Gohir.D11G346400' => 'ghi', 'Gohir.D12G104800' => 'ghi', 'Gorai.001G151300' => 'gra', 'Gorai.001G174100' => 'gra', 'Gorai.002G257000' => 'gra', 'Gorai.004G202600' => 'gra', 'Gorai.007G090900' => 'gra', 'Gorai.007G376700' => 'gra', 'Gorai.008G114100' => 'gra', 'Gorai.011G237900' => 'gra', 'GSVIVG01005450001' => 'vvi', 'GSVIVG01016232001' => 'vvi', 'GSVIVG01026157001' => 'vvi', 'GSVIVG01027419001' => 'vvi', 'GSVIVG01027631001' => 'vvi', 'GSVIVG01034143001' => 'vvi', 'HanXRQChr03g0093921' => 'han', 'HanXRQChr04g0120001' => 'han', 'HanXRQChr04g0122561' => 'han', 'HanXRQChr09g0246851' => 'han', 'HanXRQChr10g0293311' => 'han', 'HanXRQChr13g0425231' => 'han', 'HanXRQChr16g0532571' => 'han', 'Haze_09050' => 'cav', 'Haze_15715' => 'cav', 'Haze_15716' => 'cav', 'Haze_16803' => 'cav', 'Haze_16850' => 'cav', 'Hma1.2p1_0301F.1_g118655' => 'hma', 'Hma1.2p1_0309F.1_g120590' => 'hma', 'Hma1.2p1_0936F.1_g238900' => 'hma', 'Hma1.2p1_3552F.1_g336740' => 'hma', 'HPP92_003520' => 'vpl', 'HPP92_006628' => 'vpl', 'HPP92_006645' => 'vpl', 'HPP92_014669' => 'vpl', 'HPP92_015077' => 'vpl', 'Hund16742' => 'sun', 'Hund17022' => 'sun', 'Lalb_Chr02g0152131' => 'lal', 'Lalb_Chr05g0225371' => 'lal', 'Lalb_Chr07g0189841' => 'lal', 'Lalb_Chr07g0192961' => 'lal', 'Lalb_Chr12g0208221' => 'lal', 'Lalb_Chr13g0291211' => 'lal', 'Lalb_Chr13g0291781' => 'lal', 'Lalb_Chr18g0044651' => 'lal', 'Lalb_Chr21g0313731' => 'lal', 'Lj1g0022533' => 'lja', 'Lj2A18T50' => 'lonja', 'Lj2A92G93' => 'lonja', 'Lj3A965T73' => 'lonja', 'Lj3g0000673' => 'lja', 'Lj3g0002666' => 'lja', 'Lj4g0016985' => 'lja', 'Lj5g0003625' => 'lja', 'Lj7A529G36' => 'lonja', 'Lj9A569T49' => 'lonja', 'Lj9A604T63' => 'lonja', 'Lsat_1_v5_gn_3_132060' => 'lsa', 'Lsat_1_v5_gn_4_68941' => 'lsa', 'Lsat_1_v5_gn_5_95580' => 'lsa', 'Lsat_1_v5_gn_7_161' => 'lsa', 'Lsat_1_v5_gn_7_7041' => 'lsa', 'Lsat_1_v5_gn_9_33481' => 'lsa', 'Lsat_1_v5_gn_9_68260' => 'lsa', 'Manes.01G073100' => 'mes', 'Manes.01G266300' => 'mes', 'Manes.02G033300' => 'mes', 'Manes.05G017900' => 'mes', 'Manes.05G046100' => 'mes', 'Manes.08G080900' => 'mes', 'Manes.10G049400' => 'mes', 'Mapoly0009s0186' => 'mpo', 'Mapoly0036s0118' => 'mpo', 'Mapoly0101s0046' => 'mpo', 'MBI04_g30218_MAGBIO' => 'mbi', 'MBI04_g35564_MAGBIO' => 'mbi', 'MBI12_g34011_MAGBIO' => 'mbi', 'MBI14_g04655_MAGBIO' => 'mbi', 'MCO07G653' => 'mco', 'MCO10G173' => 'mco', 'MD01G1087100' => 'mdo', 'MD01G1104200' => 'mdo', 'MD02G1205100' => 'mdo', 'MD04G1079200' => 'mdo', 'MD04G1131400' => 'mdo', 'MD07G1121600' => 'mdo', 'MD07G1157300' => 'mdo', 'MD07G1171000' => 'mdo', 'MD12G1144500' => 'mdo', 'Medtr1g094610' => 'mtr', 'Medtr4g021795' => 'mtr', 'Medtr4g023760' => 'mtr', 'Medtr7g118050' => 'mtr', 'MELO3C005582.2' => 'cme', 'MELO3C005989.2' => 'cme', 'MELO3C006192.2' => 'cme', 'MELO3C009248.2' => 'cme', 'MELO3C019817.2' => 'cme', 'Migut.B01625' => 'egut', 'Migut.B01915' => 'egut', 'Migut.F01721' => 'egut', 'Migut.J00314' => 'egut', 'MSTRG.20742' => 'ama', 'MSTRG.8134' => 'ama', 'Nitab4.5_0000096g0010' => 'nta', 'Nitab4.5_0000202g0030' => 'nta', 'Nitab4.5_0000216g0370' => 'nta', 'Nitab4.5_0000457g0230' => 'nta', 'Nitab4.5_0001702g0170' => 'nta', 'Nitab4.5_0003607g0010' => 'nta', 'Nitab4.5_0004917g0020' => 'nta', 'Nitab4.5_0007059g0010' => 'nta', 'Nitab4.5_0007184g0010' => 'nta', 'Nitab4.5_0007346g0020' => 'nta', 'Nn1g00410' => 'nnu', 'Nn1g01252' => 'nnu', 'Nn2g11168' => 'nnu', 'Nn2g13403' => 'nnu', 'Nn2g13760' => 'nnu', 'Nn4g26380' => 'nnu', 'Oeu000806.2' => 'oeu', 'Oeu005788.1' => 'oeu', 'Oeu006900.3' => 'oeu', 'Oeu007797.1' => 'oeu', 'Oeu011932.1' => 'oeu', 'Oeu022739.1' => 'oeu', 'Oeu037918.1' => 'oeu', 'Oeu055490.2' => 'oeu', 'Os01g0844400' => 'osa', 'Os02g0819100' => 'osa', 'Os03g0804300' => 'osa', 'Os05g0458000' => 'osa', 'Os07g0467800' => 'osa', 'Os12g0602200' => 'osa', 'Peaxi162Scf00013g03444' => 'pax', 'Peaxi162Scf00094g01120' => 'pax', 'Peaxi162Scf00191g01211' => 'pax', 'Peaxi162Scf00238g01110' => 'pax', 'Peaxi162Scf00330g00719' => 'pax', 'Peaxi162Scf00627g00018' => 'pax', 'PGR031G2686' => 'pgr', 'PGR042G0809' => 'pgr', 'PGR142G0193' => 'pgr', 'PGSC0003DMG400011066' => 'stu', 'PGSC0003DMG400012041' => 'stu', 'PGSC0003DMG400013678' => 'stu', 'PGSC0003DMG400023477' => 'stu', 'PGSC0003DMG400025956' => 'stu', 'PGSC0003DMG401019151' => 'stu', 'Phvul.006G116400' => 'pvu', 'Phvul.007G097300' => 'pvu', 'Phvul.010G015000' => 'pvu', 'Phvul.010G083900' => 'pvu', 'Potri.001G117100' => 'ptr', 'Potri.002G147300' => 'ptr', 'Potri.003G115600' => 'ptr', 'Potri.006G087400' => 'ptr', 'Potri.010G226100' => 'ptr', 'Potri.014G069200' => 'ptr', 'Potri.014G104000' => 'ptr', 'Potri.016G100200' => 'ptr', 'Pp3c10_20450' => 'ppa', 'Pp3c1_42400' => 'ppa', 'Pp3c3_24390' => 'ppa', 'Pp3c3_2860' => 'ppa', 'PRCOL_00003193' => 'pco', 'Prupe.2G144500' => 'ppe', 'Prupe.2G195700' => 'ppe', 'Prupe.2G209800' => 'ppe', 'Prupe.5G080000' => 'ppe', 'Prupe.6G257900' => 'ppe', 'Psat3g001160' => 'psa', 'Psat6g181880' => 'psa', 'Psat7g233720' => 'psa', 'PSO063G7587' => 'pso', 'PSO339G2145' => 'pso', 'PSO339G3369' => 'pso', 'PSO478G2747' => 'pso', 'PSO513G0140' => 'pso', 'PSO782G1614' => 'pso', 'PSO782G4889' => 'pso', 'PSO782G5485' => 'pso', 'PSO801G0241' => 'pso', 'QL07p048854' => 'qlo', 'QL08p046745' => 'qlo', 'QL08p052606' => 'qlo', 'QL08p053414' => 'qlo', 'QL08p054868' => 'qlo', 'RcHm_v2.0_Chr1g0350251' => 'rch', 'RcHm_v2.0_Chr1g0360851' => 'rch', 'RcHm_v2.0_Chr1g0362791' => 'rch', 'RcHm_v2.0_Chr3g0466281' => 'rch', 'RcHm_v2.0_Chr7g0201481' => 'rch', 'Rhsim01G0148600' => 'rsi', 'Rhsim05G0194400' => 'rsi', 'Rhsim07G0000700' => 'rsi', 'Rhsim07G0000800' => 'rsi', 'Rhsim07G0027900' => 'rsi', 'Rhsim09G0149500' => 'rsi', 'RhsimUnG0186900' => 'rsi', 'Sabra01G0089900' => 'sbr', 'Sabra02G0114700' => 'sbr', 'Sabra02G0116300' => 'sbr', 'Sabra03G0080100' => 'sbr', 'Sabra08G0024300' => 'sbr', 'Sabra10G0174300' => 'sbr', 'Sabra14G0048900' => 'sbr', 'Sabra14G0076500' => 'sbr', 'SalBow5G2513' => 'sbo', 'Sc01g0002300' => 'sci', 'Sc01g0004450' => 'sci', 'Sc06g0001680' => 'sci', 'Sc23g0003580' => 'sci', 'Sed0000913' => 'sed', 'Sed0001655' => 'sed', 'Sed0007745' => 'sed', 'Sed0010951' => 'sed', 'Sed0017599' => 'sed', 'Sed0021405' => 'sed', 'Sed0022810' => 'sed', 'SEGI_07099' => 'sgi', 'SEGI_11931' => 'sgi', 'SEGI_13187' => 'sgi', 'SEGI_29958' => 'sgi', 'SEGI_36351' => 'sgi', 'SGA_v2.0_scaffold126G33770' => 'sas', 'SGA_v2.0_scaffold153G37003' => 'sas', 'SGA_v2.0_scaffold2G01359' => 'sas', 'SGA_v2.0_scaffold5G03064' => 'sas', 'SGA_v2.0_scaffold95G28903' => 'sas', 'SHI12701' => 'shi', 'SHI26410' => 'shi', 'SHI38997' => 'shi', 'SHI53759' => 'shi', 'SHI53886' => 'shi', 'SHI54714' => 'shi', 'SMO011G0041' => 'smo', 'SMO146G0251' => 'smo', 'SMO160G0004' => 'smo', 'SMO174G0057' => 'smo', 'SMO244G0089' => 'smo', 'SMO296G0011' => 'smo', 'Solyc01g091280.3' => 'sly', 'Solyc05g047610.3' => 'sly', 'Solyc05g047640.3' => 'sly', 'Solyc05g055630.3' => 'sly', 'Solyc10g018160.2' => 'sly', 'Solyc10g084820.2' => 'sly', 'Solyc10g086565.2' => 'sly', 'Sopen01g037030' => 'spe', 'Sopen05g027920' => 'spe', 'Sopen05g034070' => 'spe', 'Sopen10g007260' => 'spe', 'Sopen10g034260' => 'spe', 'Sopen10g035950' => 'spe', 'Sp3g07710' => 'spa', 'Sp4g27420' => 'spa', 'Sp5g02450' => 'spa', 'Sp6g01280' => 'spa', 'Sp6g38480' => 'spa', 'Sp7g20780' => 'spa', 'TAR374G1413' => 'tar', 'TAR623G1777' => 'tar', 'TAR629G2370' => 'tar', 'TAR633G1759' => 'tar', 'TAR636G3387' => 'tar', 'THA.LOC104802447' => 'tha', 'THA.LOC104813916' => 'tha', 'THA.LOC104816423' => 'tha', 'THA.LOC104817246' => 'tha', 'THA.LOC104825895' => 'tha', 'Thecc.01G335200' => 'tca', 'Thecc.01G377400' => 'tca', 'Thecc.03G262200' => 'tca', 'Thecc.05G036800' => 'tca', 'Thecc.10G080500' => 'tca', 'Thecc.10G080800' => 'tca', 'Thhalv10001560m.g' => 'esa', 'Thhalv10006120m.g' => 'esa', 'Thhalv10014375m.g' => 'esa', 'Thhalv10021264m.g' => 'esa', 'Thhalv10028856m.g' => 'esa', 'TPR.G1914' => 'tpr', 'TPR.G4757' => 'tpr', 'TPR.G5595' => 'tpr', 'TWI14G0952' => 'twi', 'TWI14G1307' => 'twi', 'TWI38G2143' => 'twi', 'TWI59G0826' => 'twi', 'TWI77G0527' => 'twi', 'TWI81G0150' => 'twi', 'unitig_21.g21018' => 'ugi', 'unitig_26.g9725' => 'ugi', 'unitig_744.g24653' => 'ugi', 'unitig_749.g13778' => 'ugi', 'unitig_899.g15035' => 'ugi', 'vmacro04296' => 'vma', 'vmacro04852' => 'vma', 'vmacro13404' => 'vma', 'vmacro20169' => 'vma', 'vmacro21014' => 'vma', 'VMungo0331G0237' => 'vmu', 'VMungo0331G0706' => 'vmu', 'VMungo0331G1361' => 'vmu', 'VMungo0331G1489' => 'vmu', 'VMungo0540G1037' => 'vmu', 'VMungo0720G2487' => 'vmu', 'VMungo0720G2721' => 'vmu', 'Zm00001eb086860' => 'zma', 'Zm00001eb104760' => 'zma', 'Zm00001eb148220' => 'zma', 'Zm00001eb259030' => 'zma', 'Zm00001eb289590' => 'zma', 'Zm00001eb420150' => 'zma' ), 'gf_id' => 'HOM05D000968', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000968' ), 'data_identifier' => 'HOM05D000968', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000968', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p31690' => 'bna', 'A03p36040' => 'bna', 'A03p53730' => 'bna', 'A04p01410' => 'bna', 'A05p05420' => 'bna', 'A05p39630' => 'bna', 'A05p39640' => 'bna', 'A09p00970' => 'bna', 'A09p53060' => 'bna', 'A10p31890' => 'bna', 'Aa31LG10G15040' => 'aar', 'Aa31LG1G21090' => 'aar', 'Aa31LG1G26900' => 'aar', 'Aa31LG3G1820' => 'aar', 'Aa31LG5G1100' => 'aar', 'Aa31LG6G4740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2265' => 'aag', 'Actinidia07998' => 'ach', 'Actinidia11266' => 'ach', 'Actinidia12682' => 'ach', 'Actinidia26479' => 'ach', 'Actinidia31406' => 'ach', 'Actinidia32437' => 'ach', 'Actinidia38862' => 'ach', 'Ah.05g174230' => 'amhyb', 'Ah.05g179070' => 'amhyb', 'Ah.05g179090' => 'amhyb', 'Ah.12g059950' => 'amhyb', 'AL3G20480' => 'aly', 'AL4G44520' => 'aly', 'AL5G43110' => 'aly', 'AL6G13890' => 'aly', 'AL6G52620' => 'aly', 'AL7G30830' => 'aly', 'Aqoxy1G00899' => 'aox', 'Aqoxy5G04333' => 'aox', 'Aqoxy7G00641' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3IZ0NN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4EF6AW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W9P8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79GA3M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C43NQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFCU6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G95YVJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCHK29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LU1UG8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX91RN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGB4B1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8DA0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9H7JI' => 'arhy', 'AT3G09320' => 'ath', 'AT3G60800' => 'ath', 'AT4G00840' => 'ath', 'AT4G22750' => 'ath', 'AT5G04270' => 'ath', 'ATR0090G003' => 'atr', 'ATR0559G349' => 'atr', 'ATR0680G261' => 'atr', 'ATR0810G048' => 'atr', 'Atru.chr12.831' => 'acertr', 'Atru.chr5.303' => 'acertr', 'Atru.chr5.748' => 'acertr', 'Atru.chr8.1999' => 'acertr', 'Atru.chr9.1436' => 'acertr', 'AUR62004211' => 'cqu', 'AUR62004548' => 'cqu', 'AUR62013637' => 'cqu', 'AUR62022662' => 'cqu', 'AUR62025777' => 'cqu', 'AUR62042386' => 'cqu', 'BcaB01g02310' => 'bca', 'BcaB01g06062' => 'bca', 'BcaB02g08975' => 'bca', 'BcaB02g08980' => 'bca', 'BcaC01g04228' => 'bca', 'BcaC01g06830' => 'bca', 'BcaC02g10186' => 'bca', 'BcaC02g12214' => 'bca', 'BcaC04g24101' => 'bca', 'BcaC05g29520' => 'bca', 'BcaC05g29661' => 'bca', 'BcaC06g32130' => 'bca', 'BcaC06g32131' => 'bca', 'BcaC07g40601' => 'bca', 'BcaC07g42641' => 'bca', 'BcaNung01038' => 'bca', 'BcaNung01676' => 'bca', 'BcaNung02480' => 'bca', 'BcaNung07376' => 'bca', 'BolC3t16146H' => 'bol', 'BolC3t16637H' => 'bol', 'BolC4t22257H' => 'bol', 'BolC4t24728H' => 'bol', 'BolC5t34517H' => 'bol', 'BolC7t45703H' => 'bol', 'BolC8t51166H' => 'bol', 'BolC9t53038H' => 'bol', 'BolC9t60000H' => 'bol', 'BraA01t01345Z' => 'bra', 'BraA01t01346Z' => 'bra', 'BraA01t01348Z' => 'bra', 'BraA03t12347Z' => 'bra', 'BraA03t12775Z' => 'bra', 'BraA03t14439Z' => 'bra', 'BraA04t15860Z' => 'bra', 'BraA05t19511Z' => 'bra', 'BraA05t22746Z' => 'bra', 'BraA09t35767Z' => 'bra', 'BraA09t40732Z' => 'bra', 'BraA10t45233Z' => 'bra', 'C03p38720' => 'bna', 'C03p43680' => 'bna', 'C04p06350' => 'bna', 'C04p31800' => 'bna', 'C05p58680' => 'bna', 'C07p52110' => 'bna', 'C08p35760' => 'bna', 'C09p01050' => 'bna', 'C09p72600' => 'bna', 'CAN.G106.2' => 'can', 'CAN.G1482.1' => 'can', 'CAN.G324.12' => 'can', 'CAN.G388.20' => 'can', 'CAN.G412.7' => 'can', 'CAN.G694.32' => 'can', 'CAN.G92.12' => 'can', 'CANSAT11G2353' => 'cansat', 'CANSAT21G1398' => 'cansat', 'CANSAT56G2456' => 'cansat', 'CANSAT56G3031' => 'cansat', 'CANSAT56G4539' => 'cansat', 'CARHR083680' => 'chi', 'CARHR171190' => 'chi', 'CARHR209010' => 'chi', 'CARHR229680' => 'chi', 'CARHR249490' => 'chi', 'Carub.0003s0844' => 'cru', 'Carub.0005s2755' => 'cru', 'Carub.0006s0322' => 'cru', 'Carub.0006s3586' => 'cru', 'Carub.0007s1855' => 'cru', 'Ca_07808_v3' => 'car', 'Ca_09535_v3' => 'car', 'Ca_10548_v3' => 'car', 'Ca_19913_v3' => 'car', 'Ca_19916_v3' => 'car', 'Ca_19975_v3' => 'car', 'CBR_g22876' => 'cbr', 'CBR_g22879' => 'cbr', 'CBR_g38491' => 'cbr', 'CBR_g54185' => 'cbr', 'CBR_g54190' => 'cbr', 'Cc02_g11020' => 'ccan', 'Cc02_g23920' => 'ccan', 'Cc02_g39860' => 'ccan', 'Cc02_g39870' => 'ccan', 'Cc03_g06760' => 'ccan', 'Cc06_g02450' => 'ccan', 'Cc09_g09450' => 'ccan', 'CDE02G1959' => 'cde', 'CDE04G0600' => 'cde', 'CDE07G1996' => 'cde', 'CDE07G2078' => 'cde', 'CDE11G0611' => 'cde', 'Cfa001683' => 'cfa', 'Cfa001734' => 'cfa', 'Cfa001737' => 'cfa', 'Cfa003751' => 'cfa', 'Cfa012019' => 'cfa', 'Cfa017353' => 'cfa', 'Cfa017732' => 'cfa', 'Cfa022464' => 'cfa', 'Ciclev10012400m.g' => 'ccl', 'Ciclev10021242m.g' => 'ccl', 'Ciclev10021302m.g' => 'ccl', 'Ciclev10021463m.g' => 'ccl', 'Ciclev10032359m.g' => 'ccl', 'CiPaw.01G081000' => 'cil', 'CiPaw.01G262500' => 'cil', 'CiPaw.01G269800' => 'cil', 'CiPaw.02G168400' => 'cil', 'CiPaw.05G119500' => 'cil', 'CiPaw.11G147300' => 'cil', 'ClCG01G003630' => 'cla', 'ClCG05G000510' => 'cla', 'ClCG05G002300' => 'cla', 'ClCG08G007650' => 'cla', 'ClCG10G021250' => 'cla', 'COL.COLO4_06218' => 'col', 'COL.COLO4_12538' => 'col', 'COL.COLO4_14775' => 'col', 'COL.COLO4_23875' => 'col', 'Cpa.g.sc141.16' => 'cpa', 'Cpa.g.sc169.16' => 'cpa', 'Cpa.g.sc244.4' => 'cpa', 'Cpa.g.sc244.5' => 'cpa', 'Cpa.g.sc29.87' => 'cpa', 'Cpa.g.sc53.115' => 'cpa', 'Cre03.g207502' => 'cre', 'Cre06.g277000' => 'cre', 'Cre09.g394050' => 'cre', 'CsaV3_3G007680' => 'csa', 'CsaV3_3G009710' => 'csa', 'CsaV3_3G034790' => 'csa', 'CsaV3_5G003750' => 'csa', 'CsaV3_6G036620' => 'csa', 'CSS0002288' => 'camsi', 'CSS0011250' => 'camsi', 'CSS0021619' => 'camsi', 'CSS0046701' => 'camsi', 'DCAR_006420' => 'dca', 'DCAR_006865' => 'dca', 'DCAR_008558' => 'dca', 'DCAR_028754' => 'dca', 'DCAR_028755' => 'dca', 'Dinv31218' => 'din', 'Dinv32371' => 'din', 'Dinv34250' => 'din', 'Dinv37156' => 'din', 'Dinv43704' => 'din', 'Duzib093G1811' => 'dzi', 'Duzib106G1622' => 'dzi', 'Duzib114G0504' => 'dzi', 'Duzib128G0338' => 'dzi', 'Duzib128G1577' => 'dzi', 'Duzib133G0104' => 'dzi', 'Duzib133G1080' => 'dzi', 'Duzib138G0324' => 'dzi', 'Duzib138G0394' => 'dzi', 'Duzib205G0122' => 'dzi', 'Duzib268G1020' => 'dzi', 'Duzib268G1359' => 'dzi', 'ECA232G3929' => 'eca', 'ECA236G2210' => 'eca', 'ECA236G2287' => 'eca', 'ECA240G4568' => 'eca', 'ECA247G0894' => 'eca', 'EL10Ac1g00200' => 'bvu', 'EL10Ac1g00886' => 'bvu', 'EL10As1g23091' => 'bvu', 'EL10As1g23092' => 'bvu', 'Eucgr.A01284' => 'egr', 'Eucgr.A01285' => 'egr', 'Eucgr.D02456' => 'egr', 'Eucgr.E00018' => 'egr', 'Eucgr.E01439' => 'egr', 'Eucgr.G02859' => 'egr', 'FAN01G0168' => 'fan', 'FAN01G0453' => 'fan', 'FAN01G2761' => 'fan', 'FAN02G1239' => 'fan', 'FAN03G0645' => 'fan', 'FAN03G2707' => 'fan', 'FAN03G2978' => 'fan', 'FAN04G0227' => 'fan', 'FAN06G0091' => 'fan', 'FAN06G1418' => 'fan', 'FAN06G1512' => 'fan', 'FAN06G1986' => 'fan', 'FAN06G2905' => 'fan', 'FAN06G4325' => 'fan', 'FAN08G0033' => 'fan', 'FAN09G0642' => 'fan', 'FAN10G1763' => 'fan', 'FAN10G2026' => 'fan', 'FAN10G2513' => 'fan', 'FAN10G3402' => 'fan', 'FAN10G3564' => 'fan', 'FAN10G3987' => 'fan', 'FAN13G1490' => 'fan', 'FAN14G5857' => 'fan', 'FAN18G1188' => 'fan', 'FvH4_5g00750' => 'fve', 'FvH4_6g13410' => 'fve', 'FvH4_7g11740' => 'fve', 'FvH4_7g17410' => 'fve', 'FvH4_7g18860' => 'fve', 'Glyma.01G099100' => 'gma', 'Glyma.01G142300' => 'gma', 'Glyma.03G025500' => 'gma', 'Glyma.03G069700' => 'gma', 'Glyma.03G260000' => 'gma', 'Glyma.09G269800' => 'gma', 'Glyma.10G208700' => 'gma', 'Glyma.18G220400' => 'gma', 'Glyma.20G182000' => 'gma', 'Gohir.A01G221726' => 'ghi', 'Gohir.A07G134600' => 'ghi', 'Gohir.A07G146000' => 'ghi', 'Gohir.A08G173900' => 'ghi', 'Gohir.A09G194900' => 'ghi', 'Gohir.A10G204100' => 'ghi', 'Gohir.A11G080600' => 'ghi', 'Gohir.A11G327500' => 'ghi', 'Gohir.A12G101800' => 'ghi', 'Gohir.D01G211200' => 'ghi', 'Gohir.D07G139200' => 'ghi', 'Gohir.D07G152100' => 'ghi', 'Gohir.D08G192600' => 'ghi', 'Gohir.D09G189200' => 'ghi', 'Gohir.D10G212000' => 'ghi', 'Gohir.D11G085200' => 'ghi', 'Gohir.D11G346400' => 'ghi', 'Gohir.D12G104800' => 'ghi', 'Gorai.001G151300' => 'gra', 'Gorai.001G174100' => 'gra', 'Gorai.002G257000' => 'gra', 'Gorai.004G202600' => 'gra', 'Gorai.007G090900' => 'gra', 'Gorai.007G376700' => 'gra', 'Gorai.008G114100' => 'gra', 'Gorai.011G237900' => 'gra', 'GSVIVG01005450001' => 'vvi', 'GSVIVG01016232001' => 'vvi', 'GSVIVG01026157001' => 'vvi', 'GSVIVG01027419001' => 'vvi', 'GSVIVG01027631001' => 'vvi', 'GSVIVG01034143001' => 'vvi', 'HanXRQChr03g0093921' => 'han', 'HanXRQChr04g0120001' => 'han', 'HanXRQChr04g0122561' => 'han', 'HanXRQChr09g0246851' => 'han', 'HanXRQChr10g0293311' => 'han', 'HanXRQChr13g0425231' => 'han', 'HanXRQChr16g0532571' => 'han', 'Haze_09050' => 'cav', 'Haze_15715' => 'cav', 'Haze_15716' => 'cav', 'Haze_16803' => 'cav', 'Haze_16850' => 'cav', 'Hma1.2p1_0301F.1_g118655' => 'hma', 'Hma1.2p1_0309F.1_g120590' => 'hma', 'Hma1.2p1_0936F.1_g238900' => 'hma', 'Hma1.2p1_3552F.1_g336740' => 'hma', 'HPP92_003520' => 'vpl', 'HPP92_006628' => 'vpl', 'HPP92_006645' => 'vpl', 'HPP92_014669' => 'vpl', 'HPP92_015077' => 'vpl', 'Hund16742' => 'sun', 'Hund17022' => 'sun', 'Lalb_Chr02g0152131' => 'lal', 'Lalb_Chr05g0225371' => 'lal', 'Lalb_Chr07g0189841' => 'lal', 'Lalb_Chr07g0192961' => 'lal', 'Lalb_Chr12g0208221' => 'lal', 'Lalb_Chr13g0291211' => 'lal', 'Lalb_Chr13g0291781' => 'lal', 'Lalb_Chr18g0044651' => 'lal', 'Lalb_Chr21g0313731' => 'lal', 'Lj1g0022533' => 'lja', 'Lj2A18T50' => 'lonja', 'Lj2A92G93' => 'lonja', 'Lj3A965T73' => 'lonja', 'Lj3g0000673' => 'lja', 'Lj3g0002666' => 'lja', 'Lj4g0016985' => 'lja', 'Lj5g0003625' => 'lja', 'Lj7A529G36' => 'lonja', 'Lj9A569T49' => 'lonja', 'Lj9A604T63' => 'lonja', 'Lsat_1_v5_gn_3_132060' => 'lsa', 'Lsat_1_v5_gn_4_68941' => 'lsa', 'Lsat_1_v5_gn_5_95580' => 'lsa', 'Lsat_1_v5_gn_7_161' => 'lsa', 'Lsat_1_v5_gn_7_7041' => 'lsa', 'Lsat_1_v5_gn_9_33481' => 'lsa', 'Lsat_1_v5_gn_9_68260' => 'lsa', 'Manes.01G073100' => 'mes', 'Manes.01G266300' => 'mes', 'Manes.02G033300' => 'mes', 'Manes.05G017900' => 'mes', 'Manes.05G046100' => 'mes', 'Manes.08G080900' => 'mes', 'Manes.10G049400' => 'mes', 'Mapoly0009s0186' => 'mpo', 'Mapoly0036s0118' => 'mpo', 'Mapoly0101s0046' => 'mpo', 'MBI04_g30218_MAGBIO' => 'mbi', 'MBI04_g35564_MAGBIO' => 'mbi', 'MBI12_g34011_MAGBIO' => 'mbi', 'MBI14_g04655_MAGBIO' => 'mbi', 'MCO07G653' => 'mco', 'MCO10G173' => 'mco', 'MD01G1087100' => 'mdo', 'MD01G1104200' => 'mdo', 'MD02G1205100' => 'mdo', 'MD04G1079200' => 'mdo', 'MD04G1131400' => 'mdo', 'MD07G1121600' => 'mdo', 'MD07G1157300' => 'mdo', 'MD07G1171000' => 'mdo', 'MD12G1144500' => 'mdo', 'Medtr1g094610' => 'mtr', 'Medtr4g021795' => 'mtr', 'Medtr4g023760' => 'mtr', 'Medtr7g118050' => 'mtr', 'MELO3C005582.2' => 'cme', 'MELO3C005989.2' => 'cme', 'MELO3C006192.2' => 'cme', 'MELO3C009248.2' => 'cme', 'MELO3C019817.2' => 'cme', 'Migut.B01625' => 'egut', 'Migut.B01915' => 'egut', 'Migut.F01721' => 'egut', 'Migut.J00314' => 'egut', 'MSTRG.20742' => 'ama', 'MSTRG.8134' => 'ama', 'Nitab4.5_0000096g0010' => 'nta', 'Nitab4.5_0000202g0030' => 'nta', 'Nitab4.5_0000216g0370' => 'nta', 'Nitab4.5_0000457g0230' => 'nta', 'Nitab4.5_0001702g0170' => 'nta', 'Nitab4.5_0003607g0010' => 'nta', 'Nitab4.5_0004917g0020' => 'nta', 'Nitab4.5_0007059g0010' => 'nta', 'Nitab4.5_0007184g0010' => 'nta', 'Nitab4.5_0007346g0020' => 'nta', 'Nn1g00410' => 'nnu', 'Nn1g01252' => 'nnu', 'Nn2g11168' => 'nnu', 'Nn2g13403' => 'nnu', 'Nn2g13760' => 'nnu', 'Nn4g26380' => 'nnu', 'Oeu000806.2' => 'oeu', 'Oeu005788.1' => 'oeu', 'Oeu006900.3' => 'oeu', 'Oeu007797.1' => 'oeu', 'Oeu011932.1' => 'oeu', 'Oeu022739.1' => 'oeu', 'Oeu037918.1' => 'oeu', 'Oeu055490.2' => 'oeu', 'Os01g0844400' => 'osa', 'Os02g0819100' => 'osa', 'Os03g0804300' => 'osa', 'Os05g0458000' => 'osa', 'Os07g0467800' => 'osa', 'Os12g0602200' => 'osa', 'Peaxi162Scf00013g03444' => 'pax', 'Peaxi162Scf00094g01120' => 'pax', 'Peaxi162Scf00191g01211' => 'pax', 'Peaxi162Scf00238g01110' => 'pax', 'Peaxi162Scf00330g00719' => 'pax', 'Peaxi162Scf00627g00018' => 'pax', 'PGR031G2686' => 'pgr', 'PGR042G0809' => 'pgr', 'PGR142G0193' => 'pgr', 'PGSC0003DMG400011066' => 'stu', 'PGSC0003DMG400012041' => 'stu', 'PGSC0003DMG400013678' => 'stu', 'PGSC0003DMG400023477' => 'stu', 'PGSC0003DMG400025956' => 'stu', 'PGSC0003DMG401019151' => 'stu', 'Phvul.006G116400' => 'pvu', 'Phvul.007G097300' => 'pvu', 'Phvul.010G015000' => 'pvu', 'Phvul.010G083900' => 'pvu', 'Potri.001G117100' => 'ptr', 'Potri.002G147300' => 'ptr', 'Potri.003G115600' => 'ptr', 'Potri.006G087400' => 'ptr', 'Potri.010G226100' => 'ptr', 'Potri.014G069200' => 'ptr', 'Potri.014G104000' => 'ptr', 'Potri.016G100200' => 'ptr', 'Pp3c10_20450' => 'ppa', 'Pp3c1_42400' => 'ppa', 'Pp3c3_24390' => 'ppa', 'Pp3c3_2860' => 'ppa', 'PRCOL_00003193' => 'pco', 'Prupe.2G144500' => 'ppe', 'Prupe.2G195700' => 'ppe', 'Prupe.2G209800' => 'ppe', 'Prupe.5G080000' => 'ppe', 'Prupe.6G257900' => 'ppe', 'Psat3g001160' => 'psa', 'Psat6g181880' => 'psa', 'Psat7g233720' => 'psa', 'PSO063G7587' => 'pso', 'PSO339G2145' => 'pso', 'PSO339G3369' => 'pso', 'PSO478G2747' => 'pso', 'PSO513G0140' => 'pso', 'PSO782G1614' => 'pso', 'PSO782G4889' => 'pso', 'PSO782G5485' => 'pso', 'PSO801G0241' => 'pso', 'QL07p048854' => 'qlo', 'QL08p046745' => 'qlo', 'QL08p052606' => 'qlo', 'QL08p053414' => 'qlo', 'QL08p054868' => 'qlo', 'RcHm_v2.0_Chr1g0350251' => 'rch', 'RcHm_v2.0_Chr1g0360851' => 'rch', 'RcHm_v2.0_Chr1g0362791' => 'rch', 'RcHm_v2.0_Chr3g0466281' => 'rch', 'RcHm_v2.0_Chr7g0201481' => 'rch', 'Rhsim01G0148600' => 'rsi', 'Rhsim05G0194400' => 'rsi', 'Rhsim07G0000700' => 'rsi', 'Rhsim07G0000800' => 'rsi', 'Rhsim07G0027900' => 'rsi', 'Rhsim09G0149500' => 'rsi', 'RhsimUnG0186900' => 'rsi', 'Sabra01G0089900' => 'sbr', 'Sabra02G0114700' => 'sbr', 'Sabra02G0116300' => 'sbr', 'Sabra03G0080100' => 'sbr', 'Sabra08G0024300' => 'sbr', 'Sabra10G0174300' => 'sbr', 'Sabra14G0048900' => 'sbr', 'Sabra14G0076500' => 'sbr', 'SalBow5G2513' => 'sbo', 'Sc01g0002300' => 'sci', 'Sc01g0004450' => 'sci', 'Sc06g0001680' => 'sci', 'Sc23g0003580' => 'sci', 'Sed0000913' => 'sed', 'Sed0001655' => 'sed', 'Sed0007745' => 'sed', 'Sed0010951' => 'sed', 'Sed0017599' => 'sed', 'Sed0021405' => 'sed', 'Sed0022810' => 'sed', 'SEGI_07099' => 'sgi', 'SEGI_11931' => 'sgi', 'SEGI_13187' => 'sgi', 'SEGI_29958' => 'sgi', 'SEGI_36351' => 'sgi', 'SGA_v2.0_scaffold126G33770' => 'sas', 'SGA_v2.0_scaffold153G37003' => 'sas', 'SGA_v2.0_scaffold2G01359' => 'sas', 'SGA_v2.0_scaffold5G03064' => 'sas', 'SGA_v2.0_scaffold95G28903' => 'sas', 'SHI12701' => 'shi', 'SHI26410' => 'shi', 'SHI38997' => 'shi', 'SHI53759' => 'shi', 'SHI53886' => 'shi', 'SHI54714' => 'shi', 'SMO011G0041' => 'smo', 'SMO146G0251' => 'smo', 'SMO160G0004' => 'smo', 'SMO174G0057' => 'smo', 'SMO244G0089' => 'smo', 'SMO296G0011' => 'smo', 'Solyc01g091280.3' => 'sly', 'Solyc05g047610.3' => 'sly', 'Solyc05g047640.3' => 'sly', 'Solyc05g055630.3' => 'sly', 'Solyc10g018160.2' => 'sly', 'Solyc10g084820.2' => 'sly', 'Solyc10g086565.2' => 'sly', 'Sopen01g037030' => 'spe', 'Sopen05g027920' => 'spe', 'Sopen05g034070' => 'spe', 'Sopen10g007260' => 'spe', 'Sopen10g034260' => 'spe', 'Sopen10g035950' => 'spe', 'Sp3g07710' => 'spa', 'Sp4g27420' => 'spa', 'Sp5g02450' => 'spa', 'Sp6g01280' => 'spa', 'Sp6g38480' => 'spa', 'Sp7g20780' => 'spa', 'TAR374G1413' => 'tar', 'TAR623G1777' => 'tar', 'TAR629G2370' => 'tar', 'TAR633G1759' => 'tar', 'TAR636G3387' => 'tar', 'THA.LOC104802447' => 'tha', 'THA.LOC104813916' => 'tha', 'THA.LOC104816423' => 'tha', 'THA.LOC104817246' => 'tha', 'THA.LOC104825895' => 'tha', 'Thecc.01G335200' => 'tca', 'Thecc.01G377400' => 'tca', 'Thecc.03G262200' => 'tca', 'Thecc.05G036800' => 'tca', 'Thecc.10G080500' => 'tca', 'Thecc.10G080800' => 'tca', 'Thhalv10001560m.g' => 'esa', 'Thhalv10006120m.g' => 'esa', 'Thhalv10014375m.g' => 'esa', 'Thhalv10021264m.g' => 'esa', 'Thhalv10028856m.g' => 'esa', 'TPR.G1914' => 'tpr', 'TPR.G4757' => 'tpr', 'TPR.G5595' => 'tpr', 'TWI14G0952' => 'twi', 'TWI14G1307' => 'twi', 'TWI38G2143' => 'twi', 'TWI59G0826' => 'twi', 'TWI77G0527' => 'twi', 'TWI81G0150' => 'twi', 'unitig_21.g21018' => 'ugi', 'unitig_26.g9725' => 'ugi', 'unitig_744.g24653' => 'ugi', 'unitig_749.g13778' => 'ugi', 'unitig_899.g15035' => 'ugi', 'vmacro04296' => 'vma', 'vmacro04852' => 'vma', 'vmacro13404' => 'vma', 'vmacro20169' => 'vma', 'vmacro21014' => 'vma', 'VMungo0331G0237' => 'vmu', 'VMungo0331G0706' => 'vmu', 'VMungo0331G1361' => 'vmu', 'VMungo0331G1489' => 'vmu', 'VMungo0540G1037' => 'vmu', 'VMungo0720G2487' => 'vmu', 'VMungo0720G2721' => 'vmu', 'Zm00001eb086860' => 'zma', 'Zm00001eb104760' => 'zma', 'Zm00001eb148220' => 'zma', 'Zm00001eb259030' => 'zma', 'Zm00001eb289590' => 'zma', 'Zm00001eb420150' => 'zma' ) $gf_id = 'HOM05D000968' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000968' ) $data_identifier = 'HOM05D000968' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 19, 'bol' => (int) 9, 'bra' => (int) 12, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 5, 'ccan' => (int) 7, 'cde' => (int) 5, 'cfa' => (int) 8, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 4, 'dca' => (int) 5, 'din' => (int) 5, 'dzi' => (int) 12, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 25, 'fve' => (int) 5, 'gma' => (int) 9, 'ghi' => (int) 18, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 7, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 5, 'sun' => (int) 2, 'lal' => (int) 9, 'lja' => (int) 5, 'lonja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 9, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 2, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 3, 'stu' => (int) 6, 'pvu' => (int) 4, 'ptr' => (int) 8, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 3, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 1, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 5, 'sas' => (int) 5, 'shi' => (int) 6, 'smo' => (int) 6, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 3, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420150' $species_info = array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ) $local_species = 'cfa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000968', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p31690' => 'bna', 'A03p36040' => 'bna', 'A03p53730' => 'bna', 'A04p01410' => 'bna', 'A05p05420' => 'bna', 'A05p39630' => 'bna', 'A05p39640' => 'bna', 'A09p00970' => 'bna', 'A09p53060' => 'bna', 'A10p31890' => 'bna', 'Aa31LG10G15040' => 'aar', 'Aa31LG1G21090' => 'aar', 'Aa31LG1G26900' => 'aar', 'Aa31LG3G1820' => 'aar', 'Aa31LG5G1100' => 'aar', 'Aa31LG6G4740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2265' => 'aag', 'Actinidia07998' => 'ach', 'Actinidia11266' => 'ach', 'Actinidia12682' => 'ach', 'Actinidia26479' => 'ach', 'Actinidia31406' => 'ach', 'Actinidia32437' => 'ach', 'Actinidia38862' => 'ach', 'Ah.05g174230' => 'amhyb', 'Ah.05g179070' => 'amhyb', 'Ah.05g179090' => 'amhyb', 'Ah.12g059950' => 'amhyb', 'AL3G20480' => 'aly', 'AL4G44520' => 'aly', 'AL5G43110' => 'aly', 'AL6G13890' => 'aly', 'AL6G52620' => 'aly', 'AL7G30830' => 'aly', 'Aqoxy1G00899' => 'aox', 'Aqoxy5G04333' => 'aox', 'Aqoxy7G00641' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3IZ0NN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4EF6AW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W9P8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79GA3M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C43NQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFCU6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G95YVJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCHK29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LU1UG8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX91RN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGB4B1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8DA0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9H7JI' => 'arhy', 'AT3G09320' => 'ath', 'AT3G60800' => 'ath', 'AT4G00840' => 'ath', 'AT4G22750' => 'ath', 'AT5G04270' => 'ath', 'ATR0090G003' => 'atr', 'ATR0559G349' => 'atr', 'ATR0680G261' => 'atr', 'ATR0810G048' => 'atr', 'Atru.chr12.831' => 'acertr', 'Atru.chr5.303' => 'acertr', 'Atru.chr5.748' => 'acertr', 'Atru.chr8.1999' => 'acertr', 'Atru.chr9.1436' => 'acertr', 'AUR62004211' => 'cqu', 'AUR62004548' => 'cqu', 'AUR62013637' => 'cqu', 'AUR62022662' => 'cqu', 'AUR62025777' => 'cqu', 'AUR62042386' => 'cqu', 'BcaB01g02310' => 'bca', 'BcaB01g06062' => 'bca', 'BcaB02g08975' => 'bca', 'BcaB02g08980' => 'bca', 'BcaC01g04228' => 'bca', 'BcaC01g06830' => 'bca', 'BcaC02g10186' => 'bca', 'BcaC02g12214' => 'bca', 'BcaC04g24101' => 'bca', 'BcaC05g29520' => 'bca', 'BcaC05g29661' => 'bca', 'BcaC06g32130' => 'bca', 'BcaC06g32131' => 'bca', 'BcaC07g40601' => 'bca', 'BcaC07g42641' => 'bca', 'BcaNung01038' => 'bca', 'BcaNung01676' => 'bca', 'BcaNung02480' => 'bca', 'BcaNung07376' => 'bca', 'BolC3t16146H' => 'bol', 'BolC3t16637H' => 'bol', 'BolC4t22257H' => 'bol', 'BolC4t24728H' => 'bol', 'BolC5t34517H' => 'bol', 'BolC7t45703H' => 'bol', 'BolC8t51166H' => 'bol', 'BolC9t53038H' => 'bol', 'BolC9t60000H' => 'bol', 'BraA01t01345Z' => 'bra', 'BraA01t01346Z' => 'bra', 'BraA01t01348Z' => 'bra', 'BraA03t12347Z' => 'bra', 'BraA03t12775Z' => 'bra', 'BraA03t14439Z' => 'bra', 'BraA04t15860Z' => 'bra', 'BraA05t19511Z' => 'bra', 'BraA05t22746Z' => 'bra', 'BraA09t35767Z' => 'bra', 'BraA09t40732Z' => 'bra', 'BraA10t45233Z' => 'bra', 'C03p38720' => 'bna', 'C03p43680' => 'bna', 'C04p06350' => 'bna', 'C04p31800' => 'bna', 'C05p58680' => 'bna', 'C07p52110' => 'bna', 'C08p35760' => 'bna', 'C09p01050' => 'bna', 'C09p72600' => 'bna', 'CAN.G106.2' => 'can', 'CAN.G1482.1' => 'can', 'CAN.G324.12' => 'can', 'CAN.G388.20' => 'can', 'CAN.G412.7' => 'can', 'CAN.G694.32' => 'can', 'CAN.G92.12' => 'can', 'CANSAT11G2353' => 'cansat', 'CANSAT21G1398' => 'cansat', 'CANSAT56G2456' => 'cansat', 'CANSAT56G3031' => 'cansat', 'CANSAT56G4539' => 'cansat', 'CARHR083680' => 'chi', 'CARHR171190' => 'chi', 'CARHR209010' => 'chi', 'CARHR229680' => 'chi', 'CARHR249490' => 'chi', 'Carub.0003s0844' => 'cru', 'Carub.0005s2755' => 'cru', 'Carub.0006s0322' => 'cru', 'Carub.0006s3586' => 'cru', 'Carub.0007s1855' => 'cru', 'Ca_07808_v3' => 'car', 'Ca_09535_v3' => 'car', 'Ca_10548_v3' => 'car', 'Ca_19913_v3' => 'car', 'Ca_19916_v3' => 'car', 'Ca_19975_v3' => 'car', 'CBR_g22876' => 'cbr', 'CBR_g22879' => 'cbr', 'CBR_g38491' => 'cbr', 'CBR_g54185' => 'cbr', 'CBR_g54190' => 'cbr', 'Cc02_g11020' => 'ccan', 'Cc02_g23920' => 'ccan', 'Cc02_g39860' => 'ccan', 'Cc02_g39870' => 'ccan', 'Cc03_g06760' => 'ccan', 'Cc06_g02450' => 'ccan', 'Cc09_g09450' => 'ccan', 'CDE02G1959' => 'cde', 'CDE04G0600' => 'cde', 'CDE07G1996' => 'cde', 'CDE07G2078' => 'cde', 'CDE11G0611' => 'cde', 'Cfa001683' => 'cfa', 'Cfa001734' => 'cfa', 'Cfa001737' => 'cfa', 'Cfa003751' => 'cfa', 'Cfa012019' => 'cfa', 'Cfa017353' => 'cfa', 'Cfa017732' => 'cfa', 'Cfa022464' => 'cfa', 'Ciclev10012400m.g' => 'ccl', 'Ciclev10021242m.g' => 'ccl', 'Ciclev10021302m.g' => 'ccl', 'Ciclev10021463m.g' => 'ccl', 'Ciclev10032359m.g' => 'ccl', 'CiPaw.01G081000' => 'cil', 'CiPaw.01G262500' => 'cil', 'CiPaw.01G269800' => 'cil', 'CiPaw.02G168400' => 'cil', 'CiPaw.05G119500' => 'cil', 'CiPaw.11G147300' => 'cil', 'ClCG01G003630' => 'cla', 'ClCG05G000510' => 'cla', 'ClCG05G002300' => 'cla', 'ClCG08G007650' => 'cla', 'ClCG10G021250' => 'cla', 'COL.COLO4_06218' => 'col', 'COL.COLO4_12538' => 'col', 'COL.COLO4_14775' => 'col', 'COL.COLO4_23875' => 'col', 'Cpa.g.sc141.16' => 'cpa', 'Cpa.g.sc169.16' => 'cpa', 'Cpa.g.sc244.4' => 'cpa', 'Cpa.g.sc244.5' => 'cpa', 'Cpa.g.sc29.87' => 'cpa', 'Cpa.g.sc53.115' => 'cpa', 'Cre03.g207502' => 'cre', 'Cre06.g277000' => 'cre', 'Cre09.g394050' => 'cre', 'CsaV3_3G007680' => 'csa', 'CsaV3_3G009710' => 'csa', 'CsaV3_3G034790' => 'csa', 'CsaV3_5G003750' => 'csa', 'CsaV3_6G036620' => 'csa', 'CSS0002288' => 'camsi', 'CSS0011250' => 'camsi', 'CSS0021619' => 'camsi', 'CSS0046701' => 'camsi', 'DCAR_006420' => 'dca', 'DCAR_006865' => 'dca', 'DCAR_008558' => 'dca', 'DCAR_028754' => 'dca', 'DCAR_028755' => 'dca', 'Dinv31218' => 'din', 'Dinv32371' => 'din', 'Dinv34250' => 'din', 'Dinv37156' => 'din', 'Dinv43704' => 'din', 'Duzib093G1811' => 'dzi', 'Duzib106G1622' => 'dzi', 'Duzib114G0504' => 'dzi', 'Duzib128G0338' => 'dzi', 'Duzib128G1577' => 'dzi', 'Duzib133G0104' => 'dzi', 'Duzib133G1080' => 'dzi', 'Duzib138G0324' => 'dzi', 'Duzib138G0394' => 'dzi', 'Duzib205G0122' => 'dzi', 'Duzib268G1020' => 'dzi', 'Duzib268G1359' => 'dzi', 'ECA232G3929' => 'eca', 'ECA236G2210' => 'eca', 'ECA236G2287' => 'eca', 'ECA240G4568' => 'eca', 'ECA247G0894' => 'eca', 'EL10Ac1g00200' => 'bvu', 'EL10Ac1g00886' => 'bvu', 'EL10As1g23091' => 'bvu', 'EL10As1g23092' => 'bvu', 'Eucgr.A01284' => 'egr', 'Eucgr.A01285' => 'egr', 'Eucgr.D02456' => 'egr', 'Eucgr.E00018' => 'egr', 'Eucgr.E01439' => 'egr', 'Eucgr.G02859' => 'egr', 'FAN01G0168' => 'fan', 'FAN01G0453' => 'fan', 'FAN01G2761' => 'fan', 'FAN02G1239' => 'fan', 'FAN03G0645' => 'fan', 'FAN03G2707' => 'fan', 'FAN03G2978' => 'fan', 'FAN04G0227' => 'fan', 'FAN06G0091' => 'fan', 'FAN06G1418' => 'fan', 'FAN06G1512' => 'fan', 'FAN06G1986' => 'fan', 'FAN06G2905' => 'fan', 'FAN06G4325' => 'fan', 'FAN08G0033' => 'fan', 'FAN09G0642' => 'fan', 'FAN10G1763' => 'fan', 'FAN10G2026' => 'fan', 'FAN10G2513' => 'fan', 'FAN10G3402' => 'fan', 'FAN10G3564' => 'fan', 'FAN10G3987' => 'fan', 'FAN13G1490' => 'fan', 'FAN14G5857' => 'fan', 'FAN18G1188' => 'fan', 'FvH4_5g00750' => 'fve', 'FvH4_6g13410' => 'fve', 'FvH4_7g11740' => 'fve', 'FvH4_7g17410' => 'fve', 'FvH4_7g18860' => 'fve', 'Glyma.01G099100' => 'gma', 'Glyma.01G142300' => 'gma', 'Glyma.03G025500' => 'gma', 'Glyma.03G069700' => 'gma', 'Glyma.03G260000' => 'gma', 'Glyma.09G269800' => 'gma', 'Glyma.10G208700' => 'gma', 'Glyma.18G220400' => 'gma', 'Glyma.20G182000' => 'gma', 'Gohir.A01G221726' => 'ghi', 'Gohir.A07G134600' => 'ghi', 'Gohir.A07G146000' => 'ghi', 'Gohir.A08G173900' => 'ghi', 'Gohir.A09G194900' => 'ghi', 'Gohir.A10G204100' => 'ghi', 'Gohir.A11G080600' => 'ghi', 'Gohir.A11G327500' => 'ghi', 'Gohir.A12G101800' => 'ghi', 'Gohir.D01G211200' => 'ghi', 'Gohir.D07G139200' => 'ghi', 'Gohir.D07G152100' => 'ghi', 'Gohir.D08G192600' => 'ghi', 'Gohir.D09G189200' => 'ghi', 'Gohir.D10G212000' => 'ghi', 'Gohir.D11G085200' => 'ghi', 'Gohir.D11G346400' => 'ghi', 'Gohir.D12G104800' => 'ghi', 'Gorai.001G151300' => 'gra', 'Gorai.001G174100' => 'gra', 'Gorai.002G257000' => 'gra', 'Gorai.004G202600' => 'gra', 'Gorai.007G090900' => 'gra', 'Gorai.007G376700' => 'gra', 'Gorai.008G114100' => 'gra', 'Gorai.011G237900' => 'gra', 'GSVIVG01005450001' => 'vvi', 'GSVIVG01016232001' => 'vvi', 'GSVIVG01026157001' => 'vvi', 'GSVIVG01027419001' => 'vvi', 'GSVIVG01027631001' => 'vvi', 'GSVIVG01034143001' => 'vvi', 'HanXRQChr03g0093921' => 'han', 'HanXRQChr04g0120001' => 'han', 'HanXRQChr04g0122561' => 'han', 'HanXRQChr09g0246851' => 'han', 'HanXRQChr10g0293311' => 'han', 'HanXRQChr13g0425231' => 'han', 'HanXRQChr16g0532571' => 'han', 'Haze_09050' => 'cav', 'Haze_15715' => 'cav', 'Haze_15716' => 'cav', 'Haze_16803' => 'cav', 'Haze_16850' => 'cav', 'Hma1.2p1_0301F.1_g118655' => 'hma', 'Hma1.2p1_0309F.1_g120590' => 'hma', 'Hma1.2p1_0936F.1_g238900' => 'hma', 'Hma1.2p1_3552F.1_g336740' => 'hma', 'HPP92_003520' => 'vpl', 'HPP92_006628' => 'vpl', 'HPP92_006645' => 'vpl', 'HPP92_014669' => 'vpl', 'HPP92_015077' => 'vpl', 'Hund16742' => 'sun', 'Hund17022' => 'sun', 'Lalb_Chr02g0152131' => 'lal', 'Lalb_Chr05g0225371' => 'lal', 'Lalb_Chr07g0189841' => 'lal', 'Lalb_Chr07g0192961' => 'lal', 'Lalb_Chr12g0208221' => 'lal', 'Lalb_Chr13g0291211' => 'lal', 'Lalb_Chr13g0291781' => 'lal', 'Lalb_Chr18g0044651' => 'lal', 'Lalb_Chr21g0313731' => 'lal', 'Lj1g0022533' => 'lja', 'Lj2A18T50' => 'lonja', 'Lj2A92G93' => 'lonja', 'Lj3A965T73' => 'lonja', 'Lj3g0000673' => 'lja', 'Lj3g0002666' => 'lja', 'Lj4g0016985' => 'lja', 'Lj5g0003625' => 'lja', 'Lj7A529G36' => 'lonja', 'Lj9A569T49' => 'lonja', 'Lj9A604T63' => 'lonja', 'Lsat_1_v5_gn_3_132060' => 'lsa', 'Lsat_1_v5_gn_4_68941' => 'lsa', 'Lsat_1_v5_gn_5_95580' => 'lsa', 'Lsat_1_v5_gn_7_161' => 'lsa', 'Lsat_1_v5_gn_7_7041' => 'lsa', 'Lsat_1_v5_gn_9_33481' => 'lsa', 'Lsat_1_v5_gn_9_68260' => 'lsa', 'Manes.01G073100' => 'mes', 'Manes.01G266300' => 'mes', 'Manes.02G033300' => 'mes', 'Manes.05G017900' => 'mes', 'Manes.05G046100' => 'mes', 'Manes.08G080900' => 'mes', 'Manes.10G049400' => 'mes', 'Mapoly0009s0186' => 'mpo', 'Mapoly0036s0118' => 'mpo', 'Mapoly0101s0046' => 'mpo', 'MBI04_g30218_MAGBIO' => 'mbi', 'MBI04_g35564_MAGBIO' => 'mbi', 'MBI12_g34011_MAGBIO' => 'mbi', 'MBI14_g04655_MAGBIO' => 'mbi', 'MCO07G653' => 'mco', 'MCO10G173' => 'mco', 'MD01G1087100' => 'mdo', 'MD01G1104200' => 'mdo', 'MD02G1205100' => 'mdo', 'MD04G1079200' => 'mdo', 'MD04G1131400' => 'mdo', 'MD07G1121600' => 'mdo', 'MD07G1157300' => 'mdo', 'MD07G1171000' => 'mdo', 'MD12G1144500' => 'mdo', 'Medtr1g094610' => 'mtr', 'Medtr4g021795' => 'mtr', 'Medtr4g023760' => 'mtr', 'Medtr7g118050' => 'mtr', 'MELO3C005582.2' => 'cme', 'MELO3C005989.2' => 'cme', 'MELO3C006192.2' => 'cme', 'MELO3C009248.2' => 'cme', 'MELO3C019817.2' => 'cme', 'Migut.B01625' => 'egut', 'Migut.B01915' => 'egut', 'Migut.F01721' => 'egut', 'Migut.J00314' => 'egut', 'MSTRG.20742' => 'ama', 'MSTRG.8134' => 'ama', 'Nitab4.5_0000096g0010' => 'nta', 'Nitab4.5_0000202g0030' => 'nta', 'Nitab4.5_0000216g0370' => 'nta', 'Nitab4.5_0000457g0230' => 'nta', 'Nitab4.5_0001702g0170' => 'nta', 'Nitab4.5_0003607g0010' => 'nta', 'Nitab4.5_0004917g0020' => 'nta', 'Nitab4.5_0007059g0010' => 'nta', 'Nitab4.5_0007184g0010' => 'nta', 'Nitab4.5_0007346g0020' => 'nta', 'Nn1g00410' => 'nnu', 'Nn1g01252' => 'nnu', 'Nn2g11168' => 'nnu', 'Nn2g13403' => 'nnu', 'Nn2g13760' => 'nnu', 'Nn4g26380' => 'nnu', 'Oeu000806.2' => 'oeu', 'Oeu005788.1' => 'oeu', 'Oeu006900.3' => 'oeu', 'Oeu007797.1' => 'oeu', 'Oeu011932.1' => 'oeu', 'Oeu022739.1' => 'oeu', 'Oeu037918.1' => 'oeu', 'Oeu055490.2' => 'oeu', 'Os01g0844400' => 'osa', 'Os02g0819100' => 'osa', 'Os03g0804300' => 'osa', 'Os05g0458000' => 'osa', 'Os07g0467800' => 'osa', 'Os12g0602200' => 'osa', 'Peaxi162Scf00013g03444' => 'pax', 'Peaxi162Scf00094g01120' => 'pax', 'Peaxi162Scf00191g01211' => 'pax', 'Peaxi162Scf00238g01110' => 'pax', 'Peaxi162Scf00330g00719' => 'pax', 'Peaxi162Scf00627g00018' => 'pax', 'PGR031G2686' => 'pgr', 'PGR042G0809' => 'pgr', 'PGR142G0193' => 'pgr', 'PGSC0003DMG400011066' => 'stu', 'PGSC0003DMG400012041' => 'stu', 'PGSC0003DMG400013678' => 'stu', 'PGSC0003DMG400023477' => 'stu', 'PGSC0003DMG400025956' => 'stu', 'PGSC0003DMG401019151' => 'stu', 'Phvul.006G116400' => 'pvu', 'Phvul.007G097300' => 'pvu', 'Phvul.010G015000' => 'pvu', 'Phvul.010G083900' => 'pvu', 'Potri.001G117100' => 'ptr', 'Potri.002G147300' => 'ptr', 'Potri.003G115600' => 'ptr', 'Potri.006G087400' => 'ptr', 'Potri.010G226100' => 'ptr', 'Potri.014G069200' => 'ptr', 'Potri.014G104000' => 'ptr', 'Potri.016G100200' => 'ptr', 'Pp3c10_20450' => 'ppa', 'Pp3c1_42400' => 'ppa', 'Pp3c3_24390' => 'ppa', 'Pp3c3_2860' => 'ppa', 'PRCOL_00003193' => 'pco', 'Prupe.2G144500' => 'ppe', 'Prupe.2G195700' => 'ppe', 'Prupe.2G209800' => 'ppe', 'Prupe.5G080000' => 'ppe', 'Prupe.6G257900' => 'ppe', 'Psat3g001160' => 'psa', 'Psat6g181880' => 'psa', 'Psat7g233720' => 'psa', 'PSO063G7587' => 'pso', 'PSO339G2145' => 'pso', 'PSO339G3369' => 'pso', 'PSO478G2747' => 'pso', 'PSO513G0140' => 'pso', 'PSO782G1614' => 'pso', 'PSO782G4889' => 'pso', 'PSO782G5485' => 'pso', 'PSO801G0241' => 'pso', 'QL07p048854' => 'qlo', 'QL08p046745' => 'qlo', 'QL08p052606' => 'qlo', 'QL08p053414' => 'qlo', 'QL08p054868' => 'qlo', 'RcHm_v2.0_Chr1g0350251' => 'rch', 'RcHm_v2.0_Chr1g0360851' => 'rch', 'RcHm_v2.0_Chr1g0362791' => 'rch', 'RcHm_v2.0_Chr3g0466281' => 'rch', 'RcHm_v2.0_Chr7g0201481' => 'rch', 'Rhsim01G0148600' => 'rsi', 'Rhsim05G0194400' => 'rsi', 'Rhsim07G0000700' => 'rsi', 'Rhsim07G0000800' => 'rsi', 'Rhsim07G0027900' => 'rsi', 'Rhsim09G0149500' => 'rsi', 'RhsimUnG0186900' => 'rsi', 'Sabra01G0089900' => 'sbr', 'Sabra02G0114700' => 'sbr', 'Sabra02G0116300' => 'sbr', 'Sabra03G0080100' => 'sbr', 'Sabra08G0024300' => 'sbr', 'Sabra10G0174300' => 'sbr', 'Sabra14G0048900' => 'sbr', 'Sabra14G0076500' => 'sbr', 'SalBow5G2513' => 'sbo', 'Sc01g0002300' => 'sci', 'Sc01g0004450' => 'sci', 'Sc06g0001680' => 'sci', 'Sc23g0003580' => 'sci', 'Sed0000913' => 'sed', 'Sed0001655' => 'sed', 'Sed0007745' => 'sed', 'Sed0010951' => 'sed', 'Sed0017599' => 'sed', 'Sed0021405' => 'sed', 'Sed0022810' => 'sed', 'SEGI_07099' => 'sgi', 'SEGI_11931' => 'sgi', 'SEGI_13187' => 'sgi', 'SEGI_29958' => 'sgi', 'SEGI_36351' => 'sgi', 'SGA_v2.0_scaffold126G33770' => 'sas', 'SGA_v2.0_scaffold153G37003' => 'sas', 'SGA_v2.0_scaffold2G01359' => 'sas', 'SGA_v2.0_scaffold5G03064' => 'sas', 'SGA_v2.0_scaffold95G28903' => 'sas', 'SHI12701' => 'shi', 'SHI26410' => 'shi', 'SHI38997' => 'shi', 'SHI53759' => 'shi', 'SHI53886' => 'shi', 'SHI54714' => 'shi', 'SMO011G0041' => 'smo', 'SMO146G0251' => 'smo', 'SMO160G0004' => 'smo', 'SMO174G0057' => 'smo', 'SMO244G0089' => 'smo', 'SMO296G0011' => 'smo', 'Solyc01g091280.3' => 'sly', 'Solyc05g047610.3' => 'sly', 'Solyc05g047640.3' => 'sly', 'Solyc05g055630.3' => 'sly', 'Solyc10g018160.2' => 'sly', 'Solyc10g084820.2' => 'sly', 'Solyc10g086565.2' => 'sly', 'Sopen01g037030' => 'spe', 'Sopen05g027920' => 'spe', 'Sopen05g034070' => 'spe', 'Sopen10g007260' => 'spe', 'Sopen10g034260' => 'spe', 'Sopen10g035950' => 'spe', 'Sp3g07710' => 'spa', 'Sp4g27420' => 'spa', 'Sp5g02450' => 'spa', 'Sp6g01280' => 'spa', 'Sp6g38480' => 'spa', 'Sp7g20780' => 'spa', 'TAR374G1413' => 'tar', 'TAR623G1777' => 'tar', 'TAR629G2370' => 'tar', 'TAR633G1759' => 'tar', 'TAR636G3387' => 'tar', 'THA.LOC104802447' => 'tha', 'THA.LOC104813916' => 'tha', 'THA.LOC104816423' => 'tha', 'THA.LOC104817246' => 'tha', 'THA.LOC104825895' => 'tha', 'Thecc.01G335200' => 'tca', 'Thecc.01G377400' => 'tca', 'Thecc.03G262200' => 'tca', 'Thecc.05G036800' => 'tca', 'Thecc.10G080500' => 'tca', 'Thecc.10G080800' => 'tca', 'Thhalv10001560m.g' => 'esa', 'Thhalv10006120m.g' => 'esa', 'Thhalv10014375m.g' => 'esa', 'Thhalv10021264m.g' => 'esa', 'Thhalv10028856m.g' => 'esa', 'TPR.G1914' => 'tpr', 'TPR.G4757' => 'tpr', 'TPR.G5595' => 'tpr', 'TWI14G0952' => 'twi', 'TWI14G1307' => 'twi', 'TWI38G2143' => 'twi', 'TWI59G0826' => 'twi', 'TWI77G0527' => 'twi', 'TWI81G0150' => 'twi', 'unitig_21.g21018' => 'ugi', 'unitig_26.g9725' => 'ugi', 'unitig_744.g24653' => 'ugi', 'unitig_749.g13778' => 'ugi', 'unitig_899.g15035' => 'ugi', 'vmacro04296' => 'vma', 'vmacro04852' => 'vma', 'vmacro13404' => 'vma', 'vmacro20169' => 'vma', 'vmacro21014' => 'vma', 'VMungo0331G0237' => 'vmu', 'VMungo0331G0706' => 'vmu', 'VMungo0331G1361' => 'vmu', 'VMungo0331G1489' => 'vmu', 'VMungo0540G1037' => 'vmu', 'VMungo0720G2487' => 'vmu', 'VMungo0720G2721' => 'vmu', 'Zm00001eb086860' => 'zma', 'Zm00001eb104760' => 'zma', 'Zm00001eb148220' => 'zma', 'Zm00001eb259030' => 'zma', 'Zm00001eb289590' => 'zma', 'Zm00001eb420150' => 'zma' ), 'gf_id' => 'HOM05D000968', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000968' ), 'data_identifier' => 'HOM05D000968', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000968', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p31690' => 'bna', 'A03p36040' => 'bna', 'A03p53730' => 'bna', 'A04p01410' => 'bna', 'A05p05420' => 'bna', 'A05p39630' => 'bna', 'A05p39640' => 'bna', 'A09p00970' => 'bna', 'A09p53060' => 'bna', 'A10p31890' => 'bna', 'Aa31LG10G15040' => 'aar', 'Aa31LG1G21090' => 'aar', 'Aa31LG1G26900' => 'aar', 'Aa31LG3G1820' => 'aar', 'Aa31LG5G1100' => 'aar', 'Aa31LG6G4740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2265' => 'aag', 'Actinidia07998' => 'ach', 'Actinidia11266' => 'ach', 'Actinidia12682' => 'ach', 'Actinidia26479' => 'ach', 'Actinidia31406' => 'ach', 'Actinidia32437' => 'ach', 'Actinidia38862' => 'ach', 'Ah.05g174230' => 'amhyb', 'Ah.05g179070' => 'amhyb', 'Ah.05g179090' => 'amhyb', 'Ah.12g059950' => 'amhyb', 'AL3G20480' => 'aly', 'AL4G44520' => 'aly', 'AL5G43110' => 'aly', 'AL6G13890' => 'aly', 'AL6G52620' => 'aly', 'AL7G30830' => 'aly', 'Aqoxy1G00899' => 'aox', 'Aqoxy5G04333' => 'aox', 'Aqoxy7G00641' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3IZ0NN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4EF6AW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W9P8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79GA3M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C43NQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFCU6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G95YVJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCHK29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LU1UG8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX91RN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGB4B1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8DA0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9H7JI' => 'arhy', 'AT3G09320' => 'ath', 'AT3G60800' => 'ath', 'AT4G00840' => 'ath', 'AT4G22750' => 'ath', 'AT5G04270' => 'ath', 'ATR0090G003' => 'atr', 'ATR0559G349' => 'atr', 'ATR0680G261' => 'atr', 'ATR0810G048' => 'atr', 'Atru.chr12.831' => 'acertr', 'Atru.chr5.303' => 'acertr', 'Atru.chr5.748' => 'acertr', 'Atru.chr8.1999' => 'acertr', 'Atru.chr9.1436' => 'acertr', 'AUR62004211' => 'cqu', 'AUR62004548' => 'cqu', 'AUR62013637' => 'cqu', 'AUR62022662' => 'cqu', 'AUR62025777' => 'cqu', 'AUR62042386' => 'cqu', 'BcaB01g02310' => 'bca', 'BcaB01g06062' => 'bca', 'BcaB02g08975' => 'bca', 'BcaB02g08980' => 'bca', 'BcaC01g04228' => 'bca', 'BcaC01g06830' => 'bca', 'BcaC02g10186' => 'bca', 'BcaC02g12214' => 'bca', 'BcaC04g24101' => 'bca', 'BcaC05g29520' => 'bca', 'BcaC05g29661' => 'bca', 'BcaC06g32130' => 'bca', 'BcaC06g32131' => 'bca', 'BcaC07g40601' => 'bca', 'BcaC07g42641' => 'bca', 'BcaNung01038' => 'bca', 'BcaNung01676' => 'bca', 'BcaNung02480' => 'bca', 'BcaNung07376' => 'bca', 'BolC3t16146H' => 'bol', 'BolC3t16637H' => 'bol', 'BolC4t22257H' => 'bol', 'BolC4t24728H' => 'bol', 'BolC5t34517H' => 'bol', 'BolC7t45703H' => 'bol', 'BolC8t51166H' => 'bol', 'BolC9t53038H' => 'bol', 'BolC9t60000H' => 'bol', 'BraA01t01345Z' => 'bra', 'BraA01t01346Z' => 'bra', 'BraA01t01348Z' => 'bra', 'BraA03t12347Z' => 'bra', 'BraA03t12775Z' => 'bra', 'BraA03t14439Z' => 'bra', 'BraA04t15860Z' => 'bra', 'BraA05t19511Z' => 'bra', 'BraA05t22746Z' => 'bra', 'BraA09t35767Z' => 'bra', 'BraA09t40732Z' => 'bra', 'BraA10t45233Z' => 'bra', 'C03p38720' => 'bna', 'C03p43680' => 'bna', 'C04p06350' => 'bna', 'C04p31800' => 'bna', 'C05p58680' => 'bna', 'C07p52110' => 'bna', 'C08p35760' => 'bna', 'C09p01050' => 'bna', 'C09p72600' => 'bna', 'CAN.G106.2' => 'can', 'CAN.G1482.1' => 'can', 'CAN.G324.12' => 'can', 'CAN.G388.20' => 'can', 'CAN.G412.7' => 'can', 'CAN.G694.32' => 'can', 'CAN.G92.12' => 'can', 'CANSAT11G2353' => 'cansat', 'CANSAT21G1398' => 'cansat', 'CANSAT56G2456' => 'cansat', 'CANSAT56G3031' => 'cansat', 'CANSAT56G4539' => 'cansat', 'CARHR083680' => 'chi', 'CARHR171190' => 'chi', 'CARHR209010' => 'chi', 'CARHR229680' => 'chi', 'CARHR249490' => 'chi', 'Carub.0003s0844' => 'cru', 'Carub.0005s2755' => 'cru', 'Carub.0006s0322' => 'cru', 'Carub.0006s3586' => 'cru', 'Carub.0007s1855' => 'cru', 'Ca_07808_v3' => 'car', 'Ca_09535_v3' => 'car', 'Ca_10548_v3' => 'car', 'Ca_19913_v3' => 'car', 'Ca_19916_v3' => 'car', 'Ca_19975_v3' => 'car', 'CBR_g22876' => 'cbr', 'CBR_g22879' => 'cbr', 'CBR_g38491' => 'cbr', 'CBR_g54185' => 'cbr', 'CBR_g54190' => 'cbr', 'Cc02_g11020' => 'ccan', 'Cc02_g23920' => 'ccan', 'Cc02_g39860' => 'ccan', 'Cc02_g39870' => 'ccan', 'Cc03_g06760' => 'ccan', 'Cc06_g02450' => 'ccan', 'Cc09_g09450' => 'ccan', 'CDE02G1959' => 'cde', 'CDE04G0600' => 'cde', 'CDE07G1996' => 'cde', 'CDE07G2078' => 'cde', 'CDE11G0611' => 'cde', 'Cfa001683' => 'cfa', 'Cfa001734' => 'cfa', 'Cfa001737' => 'cfa', 'Cfa003751' => 'cfa', 'Cfa012019' => 'cfa', 'Cfa017353' => 'cfa', 'Cfa017732' => 'cfa', 'Cfa022464' => 'cfa', 'Ciclev10012400m.g' => 'ccl', 'Ciclev10021242m.g' => 'ccl', 'Ciclev10021302m.g' => 'ccl', 'Ciclev10021463m.g' => 'ccl', 'Ciclev10032359m.g' => 'ccl', 'CiPaw.01G081000' => 'cil', 'CiPaw.01G262500' => 'cil', 'CiPaw.01G269800' => 'cil', 'CiPaw.02G168400' => 'cil', 'CiPaw.05G119500' => 'cil', 'CiPaw.11G147300' => 'cil', 'ClCG01G003630' => 'cla', 'ClCG05G000510' => 'cla', 'ClCG05G002300' => 'cla', 'ClCG08G007650' => 'cla', 'ClCG10G021250' => 'cla', 'COL.COLO4_06218' => 'col', 'COL.COLO4_12538' => 'col', 'COL.COLO4_14775' => 'col', 'COL.COLO4_23875' => 'col', 'Cpa.g.sc141.16' => 'cpa', 'Cpa.g.sc169.16' => 'cpa', 'Cpa.g.sc244.4' => 'cpa', 'Cpa.g.sc244.5' => 'cpa', 'Cpa.g.sc29.87' => 'cpa', 'Cpa.g.sc53.115' => 'cpa', 'Cre03.g207502' => 'cre', 'Cre06.g277000' => 'cre', 'Cre09.g394050' => 'cre', 'CsaV3_3G007680' => 'csa', 'CsaV3_3G009710' => 'csa', 'CsaV3_3G034790' => 'csa', 'CsaV3_5G003750' => 'csa', 'CsaV3_6G036620' => 'csa', 'CSS0002288' => 'camsi', 'CSS0011250' => 'camsi', 'CSS0021619' => 'camsi', 'CSS0046701' => 'camsi', 'DCAR_006420' => 'dca', 'DCAR_006865' => 'dca', 'DCAR_008558' => 'dca', 'DCAR_028754' => 'dca', 'DCAR_028755' => 'dca', 'Dinv31218' => 'din', 'Dinv32371' => 'din', 'Dinv34250' => 'din', 'Dinv37156' => 'din', 'Dinv43704' => 'din', 'Duzib093G1811' => 'dzi', 'Duzib106G1622' => 'dzi', 'Duzib114G0504' => 'dzi', 'Duzib128G0338' => 'dzi', 'Duzib128G1577' => 'dzi', 'Duzib133G0104' => 'dzi', 'Duzib133G1080' => 'dzi', 'Duzib138G0324' => 'dzi', 'Duzib138G0394' => 'dzi', 'Duzib205G0122' => 'dzi', 'Duzib268G1020' => 'dzi', 'Duzib268G1359' => 'dzi', 'ECA232G3929' => 'eca', 'ECA236G2210' => 'eca', 'ECA236G2287' => 'eca', 'ECA240G4568' => 'eca', 'ECA247G0894' => 'eca', 'EL10Ac1g00200' => 'bvu', 'EL10Ac1g00886' => 'bvu', 'EL10As1g23091' => 'bvu', 'EL10As1g23092' => 'bvu', 'Eucgr.A01284' => 'egr', 'Eucgr.A01285' => 'egr', 'Eucgr.D02456' => 'egr', 'Eucgr.E00018' => 'egr', 'Eucgr.E01439' => 'egr', 'Eucgr.G02859' => 'egr', 'FAN01G0168' => 'fan', 'FAN01G0453' => 'fan', 'FAN01G2761' => 'fan', 'FAN02G1239' => 'fan', 'FAN03G0645' => 'fan', 'FAN03G2707' => 'fan', 'FAN03G2978' => 'fan', 'FAN04G0227' => 'fan', 'FAN06G0091' => 'fan', 'FAN06G1418' => 'fan', 'FAN06G1512' => 'fan', 'FAN06G1986' => 'fan', 'FAN06G2905' => 'fan', 'FAN06G4325' => 'fan', 'FAN08G0033' => 'fan', 'FAN09G0642' => 'fan', 'FAN10G1763' => 'fan', 'FAN10G2026' => 'fan', 'FAN10G2513' => 'fan', 'FAN10G3402' => 'fan', 'FAN10G3564' => 'fan', 'FAN10G3987' => 'fan', 'FAN13G1490' => 'fan', 'FAN14G5857' => 'fan', 'FAN18G1188' => 'fan', 'FvH4_5g00750' => 'fve', 'FvH4_6g13410' => 'fve', 'FvH4_7g11740' => 'fve', 'FvH4_7g17410' => 'fve', 'FvH4_7g18860' => 'fve', 'Glyma.01G099100' => 'gma', 'Glyma.01G142300' => 'gma', 'Glyma.03G025500' => 'gma', 'Glyma.03G069700' => 'gma', 'Glyma.03G260000' => 'gma', 'Glyma.09G269800' => 'gma', 'Glyma.10G208700' => 'gma', 'Glyma.18G220400' => 'gma', 'Glyma.20G182000' => 'gma', 'Gohir.A01G221726' => 'ghi', 'Gohir.A07G134600' => 'ghi', 'Gohir.A07G146000' => 'ghi', 'Gohir.A08G173900' => 'ghi', 'Gohir.A09G194900' => 'ghi', 'Gohir.A10G204100' => 'ghi', 'Gohir.A11G080600' => 'ghi', 'Gohir.A11G327500' => 'ghi', 'Gohir.A12G101800' => 'ghi', 'Gohir.D01G211200' => 'ghi', 'Gohir.D07G139200' => 'ghi', 'Gohir.D07G152100' => 'ghi', 'Gohir.D08G192600' => 'ghi', 'Gohir.D09G189200' => 'ghi', 'Gohir.D10G212000' => 'ghi', 'Gohir.D11G085200' => 'ghi', 'Gohir.D11G346400' => 'ghi', 'Gohir.D12G104800' => 'ghi', 'Gorai.001G151300' => 'gra', 'Gorai.001G174100' => 'gra', 'Gorai.002G257000' => 'gra', 'Gorai.004G202600' => 'gra', 'Gorai.007G090900' => 'gra', 'Gorai.007G376700' => 'gra', 'Gorai.008G114100' => 'gra', 'Gorai.011G237900' => 'gra', 'GSVIVG01005450001' => 'vvi', 'GSVIVG01016232001' => 'vvi', 'GSVIVG01026157001' => 'vvi', 'GSVIVG01027419001' => 'vvi', 'GSVIVG01027631001' => 'vvi', 'GSVIVG01034143001' => 'vvi', 'HanXRQChr03g0093921' => 'han', 'HanXRQChr04g0120001' => 'han', 'HanXRQChr04g0122561' => 'han', 'HanXRQChr09g0246851' => 'han', 'HanXRQChr10g0293311' => 'han', 'HanXRQChr13g0425231' => 'han', 'HanXRQChr16g0532571' => 'han', 'Haze_09050' => 'cav', 'Haze_15715' => 'cav', 'Haze_15716' => 'cav', 'Haze_16803' => 'cav', 'Haze_16850' => 'cav', 'Hma1.2p1_0301F.1_g118655' => 'hma', 'Hma1.2p1_0309F.1_g120590' => 'hma', 'Hma1.2p1_0936F.1_g238900' => 'hma', 'Hma1.2p1_3552F.1_g336740' => 'hma', 'HPP92_003520' => 'vpl', 'HPP92_006628' => 'vpl', 'HPP92_006645' => 'vpl', 'HPP92_014669' => 'vpl', 'HPP92_015077' => 'vpl', 'Hund16742' => 'sun', 'Hund17022' => 'sun', 'Lalb_Chr02g0152131' => 'lal', 'Lalb_Chr05g0225371' => 'lal', 'Lalb_Chr07g0189841' => 'lal', 'Lalb_Chr07g0192961' => 'lal', 'Lalb_Chr12g0208221' => 'lal', 'Lalb_Chr13g0291211' => 'lal', 'Lalb_Chr13g0291781' => 'lal', 'Lalb_Chr18g0044651' => 'lal', 'Lalb_Chr21g0313731' => 'lal', 'Lj1g0022533' => 'lja', 'Lj2A18T50' => 'lonja', 'Lj2A92G93' => 'lonja', 'Lj3A965T73' => 'lonja', 'Lj3g0000673' => 'lja', 'Lj3g0002666' => 'lja', 'Lj4g0016985' => 'lja', 'Lj5g0003625' => 'lja', 'Lj7A529G36' => 'lonja', 'Lj9A569T49' => 'lonja', 'Lj9A604T63' => 'lonja', 'Lsat_1_v5_gn_3_132060' => 'lsa', 'Lsat_1_v5_gn_4_68941' => 'lsa', 'Lsat_1_v5_gn_5_95580' => 'lsa', 'Lsat_1_v5_gn_7_161' => 'lsa', 'Lsat_1_v5_gn_7_7041' => 'lsa', 'Lsat_1_v5_gn_9_33481' => 'lsa', 'Lsat_1_v5_gn_9_68260' => 'lsa', 'Manes.01G073100' => 'mes', 'Manes.01G266300' => 'mes', 'Manes.02G033300' => 'mes', 'Manes.05G017900' => 'mes', 'Manes.05G046100' => 'mes', 'Manes.08G080900' => 'mes', 'Manes.10G049400' => 'mes', 'Mapoly0009s0186' => 'mpo', 'Mapoly0036s0118' => 'mpo', 'Mapoly0101s0046' => 'mpo', 'MBI04_g30218_MAGBIO' => 'mbi', 'MBI04_g35564_MAGBIO' => 'mbi', 'MBI12_g34011_MAGBIO' => 'mbi', 'MBI14_g04655_MAGBIO' => 'mbi', 'MCO07G653' => 'mco', 'MCO10G173' => 'mco', 'MD01G1087100' => 'mdo', 'MD01G1104200' => 'mdo', 'MD02G1205100' => 'mdo', 'MD04G1079200' => 'mdo', 'MD04G1131400' => 'mdo', 'MD07G1121600' => 'mdo', 'MD07G1157300' => 'mdo', 'MD07G1171000' => 'mdo', 'MD12G1144500' => 'mdo', 'Medtr1g094610' => 'mtr', 'Medtr4g021795' => 'mtr', 'Medtr4g023760' => 'mtr', 'Medtr7g118050' => 'mtr', 'MELO3C005582.2' => 'cme', 'MELO3C005989.2' => 'cme', 'MELO3C006192.2' => 'cme', 'MELO3C009248.2' => 'cme', 'MELO3C019817.2' => 'cme', 'Migut.B01625' => 'egut', 'Migut.B01915' => 'egut', 'Migut.F01721' => 'egut', 'Migut.J00314' => 'egut', 'MSTRG.20742' => 'ama', 'MSTRG.8134' => 'ama', 'Nitab4.5_0000096g0010' => 'nta', 'Nitab4.5_0000202g0030' => 'nta', 'Nitab4.5_0000216g0370' => 'nta', 'Nitab4.5_0000457g0230' => 'nta', 'Nitab4.5_0001702g0170' => 'nta', 'Nitab4.5_0003607g0010' => 'nta', 'Nitab4.5_0004917g0020' => 'nta', 'Nitab4.5_0007059g0010' => 'nta', 'Nitab4.5_0007184g0010' => 'nta', 'Nitab4.5_0007346g0020' => 'nta', 'Nn1g00410' => 'nnu', 'Nn1g01252' => 'nnu', 'Nn2g11168' => 'nnu', 'Nn2g13403' => 'nnu', 'Nn2g13760' => 'nnu', 'Nn4g26380' => 'nnu', 'Oeu000806.2' => 'oeu', 'Oeu005788.1' => 'oeu', 'Oeu006900.3' => 'oeu', 'Oeu007797.1' => 'oeu', 'Oeu011932.1' => 'oeu', 'Oeu022739.1' => 'oeu', 'Oeu037918.1' => 'oeu', 'Oeu055490.2' => 'oeu', 'Os01g0844400' => 'osa', 'Os02g0819100' => 'osa', 'Os03g0804300' => 'osa', 'Os05g0458000' => 'osa', 'Os07g0467800' => 'osa', 'Os12g0602200' => 'osa', 'Peaxi162Scf00013g03444' => 'pax', 'Peaxi162Scf00094g01120' => 'pax', 'Peaxi162Scf00191g01211' => 'pax', 'Peaxi162Scf00238g01110' => 'pax', 'Peaxi162Scf00330g00719' => 'pax', 'Peaxi162Scf00627g00018' => 'pax', 'PGR031G2686' => 'pgr', 'PGR042G0809' => 'pgr', 'PGR142G0193' => 'pgr', 'PGSC0003DMG400011066' => 'stu', 'PGSC0003DMG400012041' => 'stu', 'PGSC0003DMG400013678' => 'stu', 'PGSC0003DMG400023477' => 'stu', 'PGSC0003DMG400025956' => 'stu', 'PGSC0003DMG401019151' => 'stu', 'Phvul.006G116400' => 'pvu', 'Phvul.007G097300' => 'pvu', 'Phvul.010G015000' => 'pvu', 'Phvul.010G083900' => 'pvu', 'Potri.001G117100' => 'ptr', 'Potri.002G147300' => 'ptr', 'Potri.003G115600' => 'ptr', 'Potri.006G087400' => 'ptr', 'Potri.010G226100' => 'ptr', 'Potri.014G069200' => 'ptr', 'Potri.014G104000' => 'ptr', 'Potri.016G100200' => 'ptr', 'Pp3c10_20450' => 'ppa', 'Pp3c1_42400' => 'ppa', 'Pp3c3_24390' => 'ppa', 'Pp3c3_2860' => 'ppa', 'PRCOL_00003193' => 'pco', 'Prupe.2G144500' => 'ppe', 'Prupe.2G195700' => 'ppe', 'Prupe.2G209800' => 'ppe', 'Prupe.5G080000' => 'ppe', 'Prupe.6G257900' => 'ppe', 'Psat3g001160' => 'psa', 'Psat6g181880' => 'psa', 'Psat7g233720' => 'psa', 'PSO063G7587' => 'pso', 'PSO339G2145' => 'pso', 'PSO339G3369' => 'pso', 'PSO478G2747' => 'pso', 'PSO513G0140' => 'pso', 'PSO782G1614' => 'pso', 'PSO782G4889' => 'pso', 'PSO782G5485' => 'pso', 'PSO801G0241' => 'pso', 'QL07p048854' => 'qlo', 'QL08p046745' => 'qlo', 'QL08p052606' => 'qlo', 'QL08p053414' => 'qlo', 'QL08p054868' => 'qlo', 'RcHm_v2.0_Chr1g0350251' => 'rch', 'RcHm_v2.0_Chr1g0360851' => 'rch', 'RcHm_v2.0_Chr1g0362791' => 'rch', 'RcHm_v2.0_Chr3g0466281' => 'rch', 'RcHm_v2.0_Chr7g0201481' => 'rch', 'Rhsim01G0148600' => 'rsi', 'Rhsim05G0194400' => 'rsi', 'Rhsim07G0000700' => 'rsi', 'Rhsim07G0000800' => 'rsi', 'Rhsim07G0027900' => 'rsi', 'Rhsim09G0149500' => 'rsi', 'RhsimUnG0186900' => 'rsi', 'Sabra01G0089900' => 'sbr', 'Sabra02G0114700' => 'sbr', 'Sabra02G0116300' => 'sbr', 'Sabra03G0080100' => 'sbr', 'Sabra08G0024300' => 'sbr', 'Sabra10G0174300' => 'sbr', 'Sabra14G0048900' => 'sbr', 'Sabra14G0076500' => 'sbr', 'SalBow5G2513' => 'sbo', 'Sc01g0002300' => 'sci', 'Sc01g0004450' => 'sci', 'Sc06g0001680' => 'sci', 'Sc23g0003580' => 'sci', 'Sed0000913' => 'sed', 'Sed0001655' => 'sed', 'Sed0007745' => 'sed', 'Sed0010951' => 'sed', 'Sed0017599' => 'sed', 'Sed0021405' => 'sed', 'Sed0022810' => 'sed', 'SEGI_07099' => 'sgi', 'SEGI_11931' => 'sgi', 'SEGI_13187' => 'sgi', 'SEGI_29958' => 'sgi', 'SEGI_36351' => 'sgi', 'SGA_v2.0_scaffold126G33770' => 'sas', 'SGA_v2.0_scaffold153G37003' => 'sas', 'SGA_v2.0_scaffold2G01359' => 'sas', 'SGA_v2.0_scaffold5G03064' => 'sas', 'SGA_v2.0_scaffold95G28903' => 'sas', 'SHI12701' => 'shi', 'SHI26410' => 'shi', 'SHI38997' => 'shi', 'SHI53759' => 'shi', 'SHI53886' => 'shi', 'SHI54714' => 'shi', 'SMO011G0041' => 'smo', 'SMO146G0251' => 'smo', 'SMO160G0004' => 'smo', 'SMO174G0057' => 'smo', 'SMO244G0089' => 'smo', 'SMO296G0011' => 'smo', 'Solyc01g091280.3' => 'sly', 'Solyc05g047610.3' => 'sly', 'Solyc05g047640.3' => 'sly', 'Solyc05g055630.3' => 'sly', 'Solyc10g018160.2' => 'sly', 'Solyc10g084820.2' => 'sly', 'Solyc10g086565.2' => 'sly', 'Sopen01g037030' => 'spe', 'Sopen05g027920' => 'spe', 'Sopen05g034070' => 'spe', 'Sopen10g007260' => 'spe', 'Sopen10g034260' => 'spe', 'Sopen10g035950' => 'spe', 'Sp3g07710' => 'spa', 'Sp4g27420' => 'spa', 'Sp5g02450' => 'spa', 'Sp6g01280' => 'spa', 'Sp6g38480' => 'spa', 'Sp7g20780' => 'spa', 'TAR374G1413' => 'tar', 'TAR623G1777' => 'tar', 'TAR629G2370' => 'tar', 'TAR633G1759' => 'tar', 'TAR636G3387' => 'tar', 'THA.LOC104802447' => 'tha', 'THA.LOC104813916' => 'tha', 'THA.LOC104816423' => 'tha', 'THA.LOC104817246' => 'tha', 'THA.LOC104825895' => 'tha', 'Thecc.01G335200' => 'tca', 'Thecc.01G377400' => 'tca', 'Thecc.03G262200' => 'tca', 'Thecc.05G036800' => 'tca', 'Thecc.10G080500' => 'tca', 'Thecc.10G080800' => 'tca', 'Thhalv10001560m.g' => 'esa', 'Thhalv10006120m.g' => 'esa', 'Thhalv10014375m.g' => 'esa', 'Thhalv10021264m.g' => 'esa', 'Thhalv10028856m.g' => 'esa', 'TPR.G1914' => 'tpr', 'TPR.G4757' => 'tpr', 'TPR.G5595' => 'tpr', 'TWI14G0952' => 'twi', 'TWI14G1307' => 'twi', 'TWI38G2143' => 'twi', 'TWI59G0826' => 'twi', 'TWI77G0527' => 'twi', 'TWI81G0150' => 'twi', 'unitig_21.g21018' => 'ugi', 'unitig_26.g9725' => 'ugi', 'unitig_744.g24653' => 'ugi', 'unitig_749.g13778' => 'ugi', 'unitig_899.g15035' => 'ugi', 'vmacro04296' => 'vma', 'vmacro04852' => 'vma', 'vmacro13404' => 'vma', 'vmacro20169' => 'vma', 'vmacro21014' => 'vma', 'VMungo0331G0237' => 'vmu', 'VMungo0331G0706' => 'vmu', 'VMungo0331G1361' => 'vmu', 'VMungo0331G1489' => 'vmu', 'VMungo0540G1037' => 'vmu', 'VMungo0720G2487' => 'vmu', 'VMungo0720G2721' => 'vmu', 'Zm00001eb086860' => 'zma', 'Zm00001eb104760' => 'zma', 'Zm00001eb148220' => 'zma', 'Zm00001eb259030' => 'zma', 'Zm00001eb289590' => 'zma', 'Zm00001eb420150' => 'zma' ) $gf_id = 'HOM05D000968' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000968' ) $data_identifier = 'HOM05D000968' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 19, 'bol' => (int) 9, 'bra' => (int) 12, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 5, 'ccan' => (int) 7, 'cde' => (int) 5, 'cfa' => (int) 8, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 4, 'dca' => (int) 5, 'din' => (int) 5, 'dzi' => (int) 12, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 25, 'fve' => (int) 5, 'gma' => (int) 9, 'ghi' => (int) 18, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 7, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 5, 'sun' => (int) 2, 'lal' => (int) 9, 'lja' => (int) 5, 'lonja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 9, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 2, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 3, 'stu' => (int) 6, 'pvu' => (int) 4, 'ptr' => (int) 8, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 3, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 1, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 5, 'sas' => (int) 5, 'shi' => (int) 6, 'smo' => (int) 6, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 3, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420150' $species_info = array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ) $local_species = 'cil' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000968', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p31690' => 'bna', 'A03p36040' => 'bna', 'A03p53730' => 'bna', 'A04p01410' => 'bna', 'A05p05420' => 'bna', 'A05p39630' => 'bna', 'A05p39640' => 'bna', 'A09p00970' => 'bna', 'A09p53060' => 'bna', 'A10p31890' => 'bna', 'Aa31LG10G15040' => 'aar', 'Aa31LG1G21090' => 'aar', 'Aa31LG1G26900' => 'aar', 'Aa31LG3G1820' => 'aar', 'Aa31LG5G1100' => 'aar', 'Aa31LG6G4740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2265' => 'aag', 'Actinidia07998' => 'ach', 'Actinidia11266' => 'ach', 'Actinidia12682' => 'ach', 'Actinidia26479' => 'ach', 'Actinidia31406' => 'ach', 'Actinidia32437' => 'ach', 'Actinidia38862' => 'ach', 'Ah.05g174230' => 'amhyb', 'Ah.05g179070' => 'amhyb', 'Ah.05g179090' => 'amhyb', 'Ah.12g059950' => 'amhyb', 'AL3G20480' => 'aly', 'AL4G44520' => 'aly', 'AL5G43110' => 'aly', 'AL6G13890' => 'aly', 'AL6G52620' => 'aly', 'AL7G30830' => 'aly', 'Aqoxy1G00899' => 'aox', 'Aqoxy5G04333' => 'aox', 'Aqoxy7G00641' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3IZ0NN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4EF6AW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W9P8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79GA3M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C43NQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFCU6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G95YVJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCHK29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LU1UG8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX91RN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGB4B1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8DA0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9H7JI' => 'arhy', 'AT3G09320' => 'ath', 'AT3G60800' => 'ath', 'AT4G00840' => 'ath', 'AT4G22750' => 'ath', 'AT5G04270' => 'ath', 'ATR0090G003' => 'atr', 'ATR0559G349' => 'atr', 'ATR0680G261' => 'atr', 'ATR0810G048' => 'atr', 'Atru.chr12.831' => 'acertr', 'Atru.chr5.303' => 'acertr', 'Atru.chr5.748' => 'acertr', 'Atru.chr8.1999' => 'acertr', 'Atru.chr9.1436' => 'acertr', 'AUR62004211' => 'cqu', 'AUR62004548' => 'cqu', 'AUR62013637' => 'cqu', 'AUR62022662' => 'cqu', 'AUR62025777' => 'cqu', 'AUR62042386' => 'cqu', 'BcaB01g02310' => 'bca', 'BcaB01g06062' => 'bca', 'BcaB02g08975' => 'bca', 'BcaB02g08980' => 'bca', 'BcaC01g04228' => 'bca', 'BcaC01g06830' => 'bca', 'BcaC02g10186' => 'bca', 'BcaC02g12214' => 'bca', 'BcaC04g24101' => 'bca', 'BcaC05g29520' => 'bca', 'BcaC05g29661' => 'bca', 'BcaC06g32130' => 'bca', 'BcaC06g32131' => 'bca', 'BcaC07g40601' => 'bca', 'BcaC07g42641' => 'bca', 'BcaNung01038' => 'bca', 'BcaNung01676' => 'bca', 'BcaNung02480' => 'bca', 'BcaNung07376' => 'bca', 'BolC3t16146H' => 'bol', 'BolC3t16637H' => 'bol', 'BolC4t22257H' => 'bol', 'BolC4t24728H' => 'bol', 'BolC5t34517H' => 'bol', 'BolC7t45703H' => 'bol', 'BolC8t51166H' => 'bol', 'BolC9t53038H' => 'bol', 'BolC9t60000H' => 'bol', 'BraA01t01345Z' => 'bra', 'BraA01t01346Z' => 'bra', 'BraA01t01348Z' => 'bra', 'BraA03t12347Z' => 'bra', 'BraA03t12775Z' => 'bra', 'BraA03t14439Z' => 'bra', 'BraA04t15860Z' => 'bra', 'BraA05t19511Z' => 'bra', 'BraA05t22746Z' => 'bra', 'BraA09t35767Z' => 'bra', 'BraA09t40732Z' => 'bra', 'BraA10t45233Z' => 'bra', 'C03p38720' => 'bna', 'C03p43680' => 'bna', 'C04p06350' => 'bna', 'C04p31800' => 'bna', 'C05p58680' => 'bna', 'C07p52110' => 'bna', 'C08p35760' => 'bna', 'C09p01050' => 'bna', 'C09p72600' => 'bna', 'CAN.G106.2' => 'can', 'CAN.G1482.1' => 'can', 'CAN.G324.12' => 'can', 'CAN.G388.20' => 'can', 'CAN.G412.7' => 'can', 'CAN.G694.32' => 'can', 'CAN.G92.12' => 'can', 'CANSAT11G2353' => 'cansat', 'CANSAT21G1398' => 'cansat', 'CANSAT56G2456' => 'cansat', 'CANSAT56G3031' => 'cansat', 'CANSAT56G4539' => 'cansat', 'CARHR083680' => 'chi', 'CARHR171190' => 'chi', 'CARHR209010' => 'chi', 'CARHR229680' => 'chi', 'CARHR249490' => 'chi', 'Carub.0003s0844' => 'cru', 'Carub.0005s2755' => 'cru', 'Carub.0006s0322' => 'cru', 'Carub.0006s3586' => 'cru', 'Carub.0007s1855' => 'cru', 'Ca_07808_v3' => 'car', 'Ca_09535_v3' => 'car', 'Ca_10548_v3' => 'car', 'Ca_19913_v3' => 'car', 'Ca_19916_v3' => 'car', 'Ca_19975_v3' => 'car', 'CBR_g22876' => 'cbr', 'CBR_g22879' => 'cbr', 'CBR_g38491' => 'cbr', 'CBR_g54185' => 'cbr', 'CBR_g54190' => 'cbr', 'Cc02_g11020' => 'ccan', 'Cc02_g23920' => 'ccan', 'Cc02_g39860' => 'ccan', 'Cc02_g39870' => 'ccan', 'Cc03_g06760' => 'ccan', 'Cc06_g02450' => 'ccan', 'Cc09_g09450' => 'ccan', 'CDE02G1959' => 'cde', 'CDE04G0600' => 'cde', 'CDE07G1996' => 'cde', 'CDE07G2078' => 'cde', 'CDE11G0611' => 'cde', 'Cfa001683' => 'cfa', 'Cfa001734' => 'cfa', 'Cfa001737' => 'cfa', 'Cfa003751' => 'cfa', 'Cfa012019' => 'cfa', 'Cfa017353' => 'cfa', 'Cfa017732' => 'cfa', 'Cfa022464' => 'cfa', 'Ciclev10012400m.g' => 'ccl', 'Ciclev10021242m.g' => 'ccl', 'Ciclev10021302m.g' => 'ccl', 'Ciclev10021463m.g' => 'ccl', 'Ciclev10032359m.g' => 'ccl', 'CiPaw.01G081000' => 'cil', 'CiPaw.01G262500' => 'cil', 'CiPaw.01G269800' => 'cil', 'CiPaw.02G168400' => 'cil', 'CiPaw.05G119500' => 'cil', 'CiPaw.11G147300' => 'cil', 'ClCG01G003630' => 'cla', 'ClCG05G000510' => 'cla', 'ClCG05G002300' => 'cla', 'ClCG08G007650' => 'cla', 'ClCG10G021250' => 'cla', 'COL.COLO4_06218' => 'col', 'COL.COLO4_12538' => 'col', 'COL.COLO4_14775' => 'col', 'COL.COLO4_23875' => 'col', 'Cpa.g.sc141.16' => 'cpa', 'Cpa.g.sc169.16' => 'cpa', 'Cpa.g.sc244.4' => 'cpa', 'Cpa.g.sc244.5' => 'cpa', 'Cpa.g.sc29.87' => 'cpa', 'Cpa.g.sc53.115' => 'cpa', 'Cre03.g207502' => 'cre', 'Cre06.g277000' => 'cre', 'Cre09.g394050' => 'cre', 'CsaV3_3G007680' => 'csa', 'CsaV3_3G009710' => 'csa', 'CsaV3_3G034790' => 'csa', 'CsaV3_5G003750' => 'csa', 'CsaV3_6G036620' => 'csa', 'CSS0002288' => 'camsi', 'CSS0011250' => 'camsi', 'CSS0021619' => 'camsi', 'CSS0046701' => 'camsi', 'DCAR_006420' => 'dca', 'DCAR_006865' => 'dca', 'DCAR_008558' => 'dca', 'DCAR_028754' => 'dca', 'DCAR_028755' => 'dca', 'Dinv31218' => 'din', 'Dinv32371' => 'din', 'Dinv34250' => 'din', 'Dinv37156' => 'din', 'Dinv43704' => 'din', 'Duzib093G1811' => 'dzi', 'Duzib106G1622' => 'dzi', 'Duzib114G0504' => 'dzi', 'Duzib128G0338' => 'dzi', 'Duzib128G1577' => 'dzi', 'Duzib133G0104' => 'dzi', 'Duzib133G1080' => 'dzi', 'Duzib138G0324' => 'dzi', 'Duzib138G0394' => 'dzi', 'Duzib205G0122' => 'dzi', 'Duzib268G1020' => 'dzi', 'Duzib268G1359' => 'dzi', 'ECA232G3929' => 'eca', 'ECA236G2210' => 'eca', 'ECA236G2287' => 'eca', 'ECA240G4568' => 'eca', 'ECA247G0894' => 'eca', 'EL10Ac1g00200' => 'bvu', 'EL10Ac1g00886' => 'bvu', 'EL10As1g23091' => 'bvu', 'EL10As1g23092' => 'bvu', 'Eucgr.A01284' => 'egr', 'Eucgr.A01285' => 'egr', 'Eucgr.D02456' => 'egr', 'Eucgr.E00018' => 'egr', 'Eucgr.E01439' => 'egr', 'Eucgr.G02859' => 'egr', 'FAN01G0168' => 'fan', 'FAN01G0453' => 'fan', 'FAN01G2761' => 'fan', 'FAN02G1239' => 'fan', 'FAN03G0645' => 'fan', 'FAN03G2707' => 'fan', 'FAN03G2978' => 'fan', 'FAN04G0227' => 'fan', 'FAN06G0091' => 'fan', 'FAN06G1418' => 'fan', 'FAN06G1512' => 'fan', 'FAN06G1986' => 'fan', 'FAN06G2905' => 'fan', 'FAN06G4325' => 'fan', 'FAN08G0033' => 'fan', 'FAN09G0642' => 'fan', 'FAN10G1763' => 'fan', 'FAN10G2026' => 'fan', 'FAN10G2513' => 'fan', 'FAN10G3402' => 'fan', 'FAN10G3564' => 'fan', 'FAN10G3987' => 'fan', 'FAN13G1490' => 'fan', 'FAN14G5857' => 'fan', 'FAN18G1188' => 'fan', 'FvH4_5g00750' => 'fve', 'FvH4_6g13410' => 'fve', 'FvH4_7g11740' => 'fve', 'FvH4_7g17410' => 'fve', 'FvH4_7g18860' => 'fve', 'Glyma.01G099100' => 'gma', 'Glyma.01G142300' => 'gma', 'Glyma.03G025500' => 'gma', 'Glyma.03G069700' => 'gma', 'Glyma.03G260000' => 'gma', 'Glyma.09G269800' => 'gma', 'Glyma.10G208700' => 'gma', 'Glyma.18G220400' => 'gma', 'Glyma.20G182000' => 'gma', 'Gohir.A01G221726' => 'ghi', 'Gohir.A07G134600' => 'ghi', 'Gohir.A07G146000' => 'ghi', 'Gohir.A08G173900' => 'ghi', 'Gohir.A09G194900' => 'ghi', 'Gohir.A10G204100' => 'ghi', 'Gohir.A11G080600' => 'ghi', 'Gohir.A11G327500' => 'ghi', 'Gohir.A12G101800' => 'ghi', 'Gohir.D01G211200' => 'ghi', 'Gohir.D07G139200' => 'ghi', 'Gohir.D07G152100' => 'ghi', 'Gohir.D08G192600' => 'ghi', 'Gohir.D09G189200' => 'ghi', 'Gohir.D10G212000' => 'ghi', 'Gohir.D11G085200' => 'ghi', 'Gohir.D11G346400' => 'ghi', 'Gohir.D12G104800' => 'ghi', 'Gorai.001G151300' => 'gra', 'Gorai.001G174100' => 'gra', 'Gorai.002G257000' => 'gra', 'Gorai.004G202600' => 'gra', 'Gorai.007G090900' => 'gra', 'Gorai.007G376700' => 'gra', 'Gorai.008G114100' => 'gra', 'Gorai.011G237900' => 'gra', 'GSVIVG01005450001' => 'vvi', 'GSVIVG01016232001' => 'vvi', 'GSVIVG01026157001' => 'vvi', 'GSVIVG01027419001' => 'vvi', 'GSVIVG01027631001' => 'vvi', 'GSVIVG01034143001' => 'vvi', 'HanXRQChr03g0093921' => 'han', 'HanXRQChr04g0120001' => 'han', 'HanXRQChr04g0122561' => 'han', 'HanXRQChr09g0246851' => 'han', 'HanXRQChr10g0293311' => 'han', 'HanXRQChr13g0425231' => 'han', 'HanXRQChr16g0532571' => 'han', 'Haze_09050' => 'cav', 'Haze_15715' => 'cav', 'Haze_15716' => 'cav', 'Haze_16803' => 'cav', 'Haze_16850' => 'cav', 'Hma1.2p1_0301F.1_g118655' => 'hma', 'Hma1.2p1_0309F.1_g120590' => 'hma', 'Hma1.2p1_0936F.1_g238900' => 'hma', 'Hma1.2p1_3552F.1_g336740' => 'hma', 'HPP92_003520' => 'vpl', 'HPP92_006628' => 'vpl', 'HPP92_006645' => 'vpl', 'HPP92_014669' => 'vpl', 'HPP92_015077' => 'vpl', 'Hund16742' => 'sun', 'Hund17022' => 'sun', 'Lalb_Chr02g0152131' => 'lal', 'Lalb_Chr05g0225371' => 'lal', 'Lalb_Chr07g0189841' => 'lal', 'Lalb_Chr07g0192961' => 'lal', 'Lalb_Chr12g0208221' => 'lal', 'Lalb_Chr13g0291211' => 'lal', 'Lalb_Chr13g0291781' => 'lal', 'Lalb_Chr18g0044651' => 'lal', 'Lalb_Chr21g0313731' => 'lal', 'Lj1g0022533' => 'lja', 'Lj2A18T50' => 'lonja', 'Lj2A92G93' => 'lonja', 'Lj3A965T73' => 'lonja', 'Lj3g0000673' => 'lja', 'Lj3g0002666' => 'lja', 'Lj4g0016985' => 'lja', 'Lj5g0003625' => 'lja', 'Lj7A529G36' => 'lonja', 'Lj9A569T49' => 'lonja', 'Lj9A604T63' => 'lonja', 'Lsat_1_v5_gn_3_132060' => 'lsa', 'Lsat_1_v5_gn_4_68941' => 'lsa', 'Lsat_1_v5_gn_5_95580' => 'lsa', 'Lsat_1_v5_gn_7_161' => 'lsa', 'Lsat_1_v5_gn_7_7041' => 'lsa', 'Lsat_1_v5_gn_9_33481' => 'lsa', 'Lsat_1_v5_gn_9_68260' => 'lsa', 'Manes.01G073100' => 'mes', 'Manes.01G266300' => 'mes', 'Manes.02G033300' => 'mes', 'Manes.05G017900' => 'mes', 'Manes.05G046100' => 'mes', 'Manes.08G080900' => 'mes', 'Manes.10G049400' => 'mes', 'Mapoly0009s0186' => 'mpo', 'Mapoly0036s0118' => 'mpo', 'Mapoly0101s0046' => 'mpo', 'MBI04_g30218_MAGBIO' => 'mbi', 'MBI04_g35564_MAGBIO' => 'mbi', 'MBI12_g34011_MAGBIO' => 'mbi', 'MBI14_g04655_MAGBIO' => 'mbi', 'MCO07G653' => 'mco', 'MCO10G173' => 'mco', 'MD01G1087100' => 'mdo', 'MD01G1104200' => 'mdo', 'MD02G1205100' => 'mdo', 'MD04G1079200' => 'mdo', 'MD04G1131400' => 'mdo', 'MD07G1121600' => 'mdo', 'MD07G1157300' => 'mdo', 'MD07G1171000' => 'mdo', 'MD12G1144500' => 'mdo', 'Medtr1g094610' => 'mtr', 'Medtr4g021795' => 'mtr', 'Medtr4g023760' => 'mtr', 'Medtr7g118050' => 'mtr', 'MELO3C005582.2' => 'cme', 'MELO3C005989.2' => 'cme', 'MELO3C006192.2' => 'cme', 'MELO3C009248.2' => 'cme', 'MELO3C019817.2' => 'cme', 'Migut.B01625' => 'egut', 'Migut.B01915' => 'egut', 'Migut.F01721' => 'egut', 'Migut.J00314' => 'egut', 'MSTRG.20742' => 'ama', 'MSTRG.8134' => 'ama', 'Nitab4.5_0000096g0010' => 'nta', 'Nitab4.5_0000202g0030' => 'nta', 'Nitab4.5_0000216g0370' => 'nta', 'Nitab4.5_0000457g0230' => 'nta', 'Nitab4.5_0001702g0170' => 'nta', 'Nitab4.5_0003607g0010' => 'nta', 'Nitab4.5_0004917g0020' => 'nta', 'Nitab4.5_0007059g0010' => 'nta', 'Nitab4.5_0007184g0010' => 'nta', 'Nitab4.5_0007346g0020' => 'nta', 'Nn1g00410' => 'nnu', 'Nn1g01252' => 'nnu', 'Nn2g11168' => 'nnu', 'Nn2g13403' => 'nnu', 'Nn2g13760' => 'nnu', 'Nn4g26380' => 'nnu', 'Oeu000806.2' => 'oeu', 'Oeu005788.1' => 'oeu', 'Oeu006900.3' => 'oeu', 'Oeu007797.1' => 'oeu', 'Oeu011932.1' => 'oeu', 'Oeu022739.1' => 'oeu', 'Oeu037918.1' => 'oeu', 'Oeu055490.2' => 'oeu', 'Os01g0844400' => 'osa', 'Os02g0819100' => 'osa', 'Os03g0804300' => 'osa', 'Os05g0458000' => 'osa', 'Os07g0467800' => 'osa', 'Os12g0602200' => 'osa', 'Peaxi162Scf00013g03444' => 'pax', 'Peaxi162Scf00094g01120' => 'pax', 'Peaxi162Scf00191g01211' => 'pax', 'Peaxi162Scf00238g01110' => 'pax', 'Peaxi162Scf00330g00719' => 'pax', 'Peaxi162Scf00627g00018' => 'pax', 'PGR031G2686' => 'pgr', 'PGR042G0809' => 'pgr', 'PGR142G0193' => 'pgr', 'PGSC0003DMG400011066' => 'stu', 'PGSC0003DMG400012041' => 'stu', 'PGSC0003DMG400013678' => 'stu', 'PGSC0003DMG400023477' => 'stu', 'PGSC0003DMG400025956' => 'stu', 'PGSC0003DMG401019151' => 'stu', 'Phvul.006G116400' => 'pvu', 'Phvul.007G097300' => 'pvu', 'Phvul.010G015000' => 'pvu', 'Phvul.010G083900' => 'pvu', 'Potri.001G117100' => 'ptr', 'Potri.002G147300' => 'ptr', 'Potri.003G115600' => 'ptr', 'Potri.006G087400' => 'ptr', 'Potri.010G226100' => 'ptr', 'Potri.014G069200' => 'ptr', 'Potri.014G104000' => 'ptr', 'Potri.016G100200' => 'ptr', 'Pp3c10_20450' => 'ppa', 'Pp3c1_42400' => 'ppa', 'Pp3c3_24390' => 'ppa', 'Pp3c3_2860' => 'ppa', 'PRCOL_00003193' => 'pco', 'Prupe.2G144500' => 'ppe', 'Prupe.2G195700' => 'ppe', 'Prupe.2G209800' => 'ppe', 'Prupe.5G080000' => 'ppe', 'Prupe.6G257900' => 'ppe', 'Psat3g001160' => 'psa', 'Psat6g181880' => 'psa', 'Psat7g233720' => 'psa', 'PSO063G7587' => 'pso', 'PSO339G2145' => 'pso', 'PSO339G3369' => 'pso', 'PSO478G2747' => 'pso', 'PSO513G0140' => 'pso', 'PSO782G1614' => 'pso', 'PSO782G4889' => 'pso', 'PSO782G5485' => 'pso', 'PSO801G0241' => 'pso', 'QL07p048854' => 'qlo', 'QL08p046745' => 'qlo', 'QL08p052606' => 'qlo', 'QL08p053414' => 'qlo', 'QL08p054868' => 'qlo', 'RcHm_v2.0_Chr1g0350251' => 'rch', 'RcHm_v2.0_Chr1g0360851' => 'rch', 'RcHm_v2.0_Chr1g0362791' => 'rch', 'RcHm_v2.0_Chr3g0466281' => 'rch', 'RcHm_v2.0_Chr7g0201481' => 'rch', 'Rhsim01G0148600' => 'rsi', 'Rhsim05G0194400' => 'rsi', 'Rhsim07G0000700' => 'rsi', 'Rhsim07G0000800' => 'rsi', 'Rhsim07G0027900' => 'rsi', 'Rhsim09G0149500' => 'rsi', 'RhsimUnG0186900' => 'rsi', 'Sabra01G0089900' => 'sbr', 'Sabra02G0114700' => 'sbr', 'Sabra02G0116300' => 'sbr', 'Sabra03G0080100' => 'sbr', 'Sabra08G0024300' => 'sbr', 'Sabra10G0174300' => 'sbr', 'Sabra14G0048900' => 'sbr', 'Sabra14G0076500' => 'sbr', 'SalBow5G2513' => 'sbo', 'Sc01g0002300' => 'sci', 'Sc01g0004450' => 'sci', 'Sc06g0001680' => 'sci', 'Sc23g0003580' => 'sci', 'Sed0000913' => 'sed', 'Sed0001655' => 'sed', 'Sed0007745' => 'sed', 'Sed0010951' => 'sed', 'Sed0017599' => 'sed', 'Sed0021405' => 'sed', 'Sed0022810' => 'sed', 'SEGI_07099' => 'sgi', 'SEGI_11931' => 'sgi', 'SEGI_13187' => 'sgi', 'SEGI_29958' => 'sgi', 'SEGI_36351' => 'sgi', 'SGA_v2.0_scaffold126G33770' => 'sas', 'SGA_v2.0_scaffold153G37003' => 'sas', 'SGA_v2.0_scaffold2G01359' => 'sas', 'SGA_v2.0_scaffold5G03064' => 'sas', 'SGA_v2.0_scaffold95G28903' => 'sas', 'SHI12701' => 'shi', 'SHI26410' => 'shi', 'SHI38997' => 'shi', 'SHI53759' => 'shi', 'SHI53886' => 'shi', 'SHI54714' => 'shi', 'SMO011G0041' => 'smo', 'SMO146G0251' => 'smo', 'SMO160G0004' => 'smo', 'SMO174G0057' => 'smo', 'SMO244G0089' => 'smo', 'SMO296G0011' => 'smo', 'Solyc01g091280.3' => 'sly', 'Solyc05g047610.3' => 'sly', 'Solyc05g047640.3' => 'sly', 'Solyc05g055630.3' => 'sly', 'Solyc10g018160.2' => 'sly', 'Solyc10g084820.2' => 'sly', 'Solyc10g086565.2' => 'sly', 'Sopen01g037030' => 'spe', 'Sopen05g027920' => 'spe', 'Sopen05g034070' => 'spe', 'Sopen10g007260' => 'spe', 'Sopen10g034260' => 'spe', 'Sopen10g035950' => 'spe', 'Sp3g07710' => 'spa', 'Sp4g27420' => 'spa', 'Sp5g02450' => 'spa', 'Sp6g01280' => 'spa', 'Sp6g38480' => 'spa', 'Sp7g20780' => 'spa', 'TAR374G1413' => 'tar', 'TAR623G1777' => 'tar', 'TAR629G2370' => 'tar', 'TAR633G1759' => 'tar', 'TAR636G3387' => 'tar', 'THA.LOC104802447' => 'tha', 'THA.LOC104813916' => 'tha', 'THA.LOC104816423' => 'tha', 'THA.LOC104817246' => 'tha', 'THA.LOC104825895' => 'tha', 'Thecc.01G335200' => 'tca', 'Thecc.01G377400' => 'tca', 'Thecc.03G262200' => 'tca', 'Thecc.05G036800' => 'tca', 'Thecc.10G080500' => 'tca', 'Thecc.10G080800' => 'tca', 'Thhalv10001560m.g' => 'esa', 'Thhalv10006120m.g' => 'esa', 'Thhalv10014375m.g' => 'esa', 'Thhalv10021264m.g' => 'esa', 'Thhalv10028856m.g' => 'esa', 'TPR.G1914' => 'tpr', 'TPR.G4757' => 'tpr', 'TPR.G5595' => 'tpr', 'TWI14G0952' => 'twi', 'TWI14G1307' => 'twi', 'TWI38G2143' => 'twi', 'TWI59G0826' => 'twi', 'TWI77G0527' => 'twi', 'TWI81G0150' => 'twi', 'unitig_21.g21018' => 'ugi', 'unitig_26.g9725' => 'ugi', 'unitig_744.g24653' => 'ugi', 'unitig_749.g13778' => 'ugi', 'unitig_899.g15035' => 'ugi', 'vmacro04296' => 'vma', 'vmacro04852' => 'vma', 'vmacro13404' => 'vma', 'vmacro20169' => 'vma', 'vmacro21014' => 'vma', 'VMungo0331G0237' => 'vmu', 'VMungo0331G0706' => 'vmu', 'VMungo0331G1361' => 'vmu', 'VMungo0331G1489' => 'vmu', 'VMungo0540G1037' => 'vmu', 'VMungo0720G2487' => 'vmu', 'VMungo0720G2721' => 'vmu', 'Zm00001eb086860' => 'zma', 'Zm00001eb104760' => 'zma', 'Zm00001eb148220' => 'zma', 'Zm00001eb259030' => 'zma', 'Zm00001eb289590' => 'zma', 'Zm00001eb420150' => 'zma' ), 'gf_id' => 'HOM05D000968', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000968' ), 'data_identifier' => 'HOM05D000968', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000968', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p31690' => 'bna', 'A03p36040' => 'bna', 'A03p53730' => 'bna', 'A04p01410' => 'bna', 'A05p05420' => 'bna', 'A05p39630' => 'bna', 'A05p39640' => 'bna', 'A09p00970' => 'bna', 'A09p53060' => 'bna', 'A10p31890' => 'bna', 'Aa31LG10G15040' => 'aar', 'Aa31LG1G21090' => 'aar', 'Aa31LG1G26900' => 'aar', 'Aa31LG3G1820' => 'aar', 'Aa31LG5G1100' => 'aar', 'Aa31LG6G4740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2265' => 'aag', 'Actinidia07998' => 'ach', 'Actinidia11266' => 'ach', 'Actinidia12682' => 'ach', 'Actinidia26479' => 'ach', 'Actinidia31406' => 'ach', 'Actinidia32437' => 'ach', 'Actinidia38862' => 'ach', 'Ah.05g174230' => 'amhyb', 'Ah.05g179070' => 'amhyb', 'Ah.05g179090' => 'amhyb', 'Ah.12g059950' => 'amhyb', 'AL3G20480' => 'aly', 'AL4G44520' => 'aly', 'AL5G43110' => 'aly', 'AL6G13890' => 'aly', 'AL6G52620' => 'aly', 'AL7G30830' => 'aly', 'Aqoxy1G00899' => 'aox', 'Aqoxy5G04333' => 'aox', 'Aqoxy7G00641' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3IZ0NN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4EF6AW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W9P8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79GA3M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C43NQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFCU6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G95YVJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCHK29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LU1UG8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX91RN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGB4B1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8DA0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9H7JI' => 'arhy', 'AT3G09320' => 'ath', 'AT3G60800' => 'ath', 'AT4G00840' => 'ath', 'AT4G22750' => 'ath', 'AT5G04270' => 'ath', 'ATR0090G003' => 'atr', 'ATR0559G349' => 'atr', 'ATR0680G261' => 'atr', 'ATR0810G048' => 'atr', 'Atru.chr12.831' => 'acertr', 'Atru.chr5.303' => 'acertr', 'Atru.chr5.748' => 'acertr', 'Atru.chr8.1999' => 'acertr', 'Atru.chr9.1436' => 'acertr', 'AUR62004211' => 'cqu', 'AUR62004548' => 'cqu', 'AUR62013637' => 'cqu', 'AUR62022662' => 'cqu', 'AUR62025777' => 'cqu', 'AUR62042386' => 'cqu', 'BcaB01g02310' => 'bca', 'BcaB01g06062' => 'bca', 'BcaB02g08975' => 'bca', 'BcaB02g08980' => 'bca', 'BcaC01g04228' => 'bca', 'BcaC01g06830' => 'bca', 'BcaC02g10186' => 'bca', 'BcaC02g12214' => 'bca', 'BcaC04g24101' => 'bca', 'BcaC05g29520' => 'bca', 'BcaC05g29661' => 'bca', 'BcaC06g32130' => 'bca', 'BcaC06g32131' => 'bca', 'BcaC07g40601' => 'bca', 'BcaC07g42641' => 'bca', 'BcaNung01038' => 'bca', 'BcaNung01676' => 'bca', 'BcaNung02480' => 'bca', 'BcaNung07376' => 'bca', 'BolC3t16146H' => 'bol', 'BolC3t16637H' => 'bol', 'BolC4t22257H' => 'bol', 'BolC4t24728H' => 'bol', 'BolC5t34517H' => 'bol', 'BolC7t45703H' => 'bol', 'BolC8t51166H' => 'bol', 'BolC9t53038H' => 'bol', 'BolC9t60000H' => 'bol', 'BraA01t01345Z' => 'bra', 'BraA01t01346Z' => 'bra', 'BraA01t01348Z' => 'bra', 'BraA03t12347Z' => 'bra', 'BraA03t12775Z' => 'bra', 'BraA03t14439Z' => 'bra', 'BraA04t15860Z' => 'bra', 'BraA05t19511Z' => 'bra', 'BraA05t22746Z' => 'bra', 'BraA09t35767Z' => 'bra', 'BraA09t40732Z' => 'bra', 'BraA10t45233Z' => 'bra', 'C03p38720' => 'bna', 'C03p43680' => 'bna', 'C04p06350' => 'bna', 'C04p31800' => 'bna', 'C05p58680' => 'bna', 'C07p52110' => 'bna', 'C08p35760' => 'bna', 'C09p01050' => 'bna', 'C09p72600' => 'bna', 'CAN.G106.2' => 'can', 'CAN.G1482.1' => 'can', 'CAN.G324.12' => 'can', 'CAN.G388.20' => 'can', 'CAN.G412.7' => 'can', 'CAN.G694.32' => 'can', 'CAN.G92.12' => 'can', 'CANSAT11G2353' => 'cansat', 'CANSAT21G1398' => 'cansat', 'CANSAT56G2456' => 'cansat', 'CANSAT56G3031' => 'cansat', 'CANSAT56G4539' => 'cansat', 'CARHR083680' => 'chi', 'CARHR171190' => 'chi', 'CARHR209010' => 'chi', 'CARHR229680' => 'chi', 'CARHR249490' => 'chi', 'Carub.0003s0844' => 'cru', 'Carub.0005s2755' => 'cru', 'Carub.0006s0322' => 'cru', 'Carub.0006s3586' => 'cru', 'Carub.0007s1855' => 'cru', 'Ca_07808_v3' => 'car', 'Ca_09535_v3' => 'car', 'Ca_10548_v3' => 'car', 'Ca_19913_v3' => 'car', 'Ca_19916_v3' => 'car', 'Ca_19975_v3' => 'car', 'CBR_g22876' => 'cbr', 'CBR_g22879' => 'cbr', 'CBR_g38491' => 'cbr', 'CBR_g54185' => 'cbr', 'CBR_g54190' => 'cbr', 'Cc02_g11020' => 'ccan', 'Cc02_g23920' => 'ccan', 'Cc02_g39860' => 'ccan', 'Cc02_g39870' => 'ccan', 'Cc03_g06760' => 'ccan', 'Cc06_g02450' => 'ccan', 'Cc09_g09450' => 'ccan', 'CDE02G1959' => 'cde', 'CDE04G0600' => 'cde', 'CDE07G1996' => 'cde', 'CDE07G2078' => 'cde', 'CDE11G0611' => 'cde', 'Cfa001683' => 'cfa', 'Cfa001734' => 'cfa', 'Cfa001737' => 'cfa', 'Cfa003751' => 'cfa', 'Cfa012019' => 'cfa', 'Cfa017353' => 'cfa', 'Cfa017732' => 'cfa', 'Cfa022464' => 'cfa', 'Ciclev10012400m.g' => 'ccl', 'Ciclev10021242m.g' => 'ccl', 'Ciclev10021302m.g' => 'ccl', 'Ciclev10021463m.g' => 'ccl', 'Ciclev10032359m.g' => 'ccl', 'CiPaw.01G081000' => 'cil', 'CiPaw.01G262500' => 'cil', 'CiPaw.01G269800' => 'cil', 'CiPaw.02G168400' => 'cil', 'CiPaw.05G119500' => 'cil', 'CiPaw.11G147300' => 'cil', 'ClCG01G003630' => 'cla', 'ClCG05G000510' => 'cla', 'ClCG05G002300' => 'cla', 'ClCG08G007650' => 'cla', 'ClCG10G021250' => 'cla', 'COL.COLO4_06218' => 'col', 'COL.COLO4_12538' => 'col', 'COL.COLO4_14775' => 'col', 'COL.COLO4_23875' => 'col', 'Cpa.g.sc141.16' => 'cpa', 'Cpa.g.sc169.16' => 'cpa', 'Cpa.g.sc244.4' => 'cpa', 'Cpa.g.sc244.5' => 'cpa', 'Cpa.g.sc29.87' => 'cpa', 'Cpa.g.sc53.115' => 'cpa', 'Cre03.g207502' => 'cre', 'Cre06.g277000' => 'cre', 'Cre09.g394050' => 'cre', 'CsaV3_3G007680' => 'csa', 'CsaV3_3G009710' => 'csa', 'CsaV3_3G034790' => 'csa', 'CsaV3_5G003750' => 'csa', 'CsaV3_6G036620' => 'csa', 'CSS0002288' => 'camsi', 'CSS0011250' => 'camsi', 'CSS0021619' => 'camsi', 'CSS0046701' => 'camsi', 'DCAR_006420' => 'dca', 'DCAR_006865' => 'dca', 'DCAR_008558' => 'dca', 'DCAR_028754' => 'dca', 'DCAR_028755' => 'dca', 'Dinv31218' => 'din', 'Dinv32371' => 'din', 'Dinv34250' => 'din', 'Dinv37156' => 'din', 'Dinv43704' => 'din', 'Duzib093G1811' => 'dzi', 'Duzib106G1622' => 'dzi', 'Duzib114G0504' => 'dzi', 'Duzib128G0338' => 'dzi', 'Duzib128G1577' => 'dzi', 'Duzib133G0104' => 'dzi', 'Duzib133G1080' => 'dzi', 'Duzib138G0324' => 'dzi', 'Duzib138G0394' => 'dzi', 'Duzib205G0122' => 'dzi', 'Duzib268G1020' => 'dzi', 'Duzib268G1359' => 'dzi', 'ECA232G3929' => 'eca', 'ECA236G2210' => 'eca', 'ECA236G2287' => 'eca', 'ECA240G4568' => 'eca', 'ECA247G0894' => 'eca', 'EL10Ac1g00200' => 'bvu', 'EL10Ac1g00886' => 'bvu', 'EL10As1g23091' => 'bvu', 'EL10As1g23092' => 'bvu', 'Eucgr.A01284' => 'egr', 'Eucgr.A01285' => 'egr', 'Eucgr.D02456' => 'egr', 'Eucgr.E00018' => 'egr', 'Eucgr.E01439' => 'egr', 'Eucgr.G02859' => 'egr', 'FAN01G0168' => 'fan', 'FAN01G0453' => 'fan', 'FAN01G2761' => 'fan', 'FAN02G1239' => 'fan', 'FAN03G0645' => 'fan', 'FAN03G2707' => 'fan', 'FAN03G2978' => 'fan', 'FAN04G0227' => 'fan', 'FAN06G0091' => 'fan', 'FAN06G1418' => 'fan', 'FAN06G1512' => 'fan', 'FAN06G1986' => 'fan', 'FAN06G2905' => 'fan', 'FAN06G4325' => 'fan', 'FAN08G0033' => 'fan', 'FAN09G0642' => 'fan', 'FAN10G1763' => 'fan', 'FAN10G2026' => 'fan', 'FAN10G2513' => 'fan', 'FAN10G3402' => 'fan', 'FAN10G3564' => 'fan', 'FAN10G3987' => 'fan', 'FAN13G1490' => 'fan', 'FAN14G5857' => 'fan', 'FAN18G1188' => 'fan', 'FvH4_5g00750' => 'fve', 'FvH4_6g13410' => 'fve', 'FvH4_7g11740' => 'fve', 'FvH4_7g17410' => 'fve', 'FvH4_7g18860' => 'fve', 'Glyma.01G099100' => 'gma', 'Glyma.01G142300' => 'gma', 'Glyma.03G025500' => 'gma', 'Glyma.03G069700' => 'gma', 'Glyma.03G260000' => 'gma', 'Glyma.09G269800' => 'gma', 'Glyma.10G208700' => 'gma', 'Glyma.18G220400' => 'gma', 'Glyma.20G182000' => 'gma', 'Gohir.A01G221726' => 'ghi', 'Gohir.A07G134600' => 'ghi', 'Gohir.A07G146000' => 'ghi', 'Gohir.A08G173900' => 'ghi', 'Gohir.A09G194900' => 'ghi', 'Gohir.A10G204100' => 'ghi', 'Gohir.A11G080600' => 'ghi', 'Gohir.A11G327500' => 'ghi', 'Gohir.A12G101800' => 'ghi', 'Gohir.D01G211200' => 'ghi', 'Gohir.D07G139200' => 'ghi', 'Gohir.D07G152100' => 'ghi', 'Gohir.D08G192600' => 'ghi', 'Gohir.D09G189200' => 'ghi', 'Gohir.D10G212000' => 'ghi', 'Gohir.D11G085200' => 'ghi', 'Gohir.D11G346400' => 'ghi', 'Gohir.D12G104800' => 'ghi', 'Gorai.001G151300' => 'gra', 'Gorai.001G174100' => 'gra', 'Gorai.002G257000' => 'gra', 'Gorai.004G202600' => 'gra', 'Gorai.007G090900' => 'gra', 'Gorai.007G376700' => 'gra', 'Gorai.008G114100' => 'gra', 'Gorai.011G237900' => 'gra', 'GSVIVG01005450001' => 'vvi', 'GSVIVG01016232001' => 'vvi', 'GSVIVG01026157001' => 'vvi', 'GSVIVG01027419001' => 'vvi', 'GSVIVG01027631001' => 'vvi', 'GSVIVG01034143001' => 'vvi', 'HanXRQChr03g0093921' => 'han', 'HanXRQChr04g0120001' => 'han', 'HanXRQChr04g0122561' => 'han', 'HanXRQChr09g0246851' => 'han', 'HanXRQChr10g0293311' => 'han', 'HanXRQChr13g0425231' => 'han', 'HanXRQChr16g0532571' => 'han', 'Haze_09050' => 'cav', 'Haze_15715' => 'cav', 'Haze_15716' => 'cav', 'Haze_16803' => 'cav', 'Haze_16850' => 'cav', 'Hma1.2p1_0301F.1_g118655' => 'hma', 'Hma1.2p1_0309F.1_g120590' => 'hma', 'Hma1.2p1_0936F.1_g238900' => 'hma', 'Hma1.2p1_3552F.1_g336740' => 'hma', 'HPP92_003520' => 'vpl', 'HPP92_006628' => 'vpl', 'HPP92_006645' => 'vpl', 'HPP92_014669' => 'vpl', 'HPP92_015077' => 'vpl', 'Hund16742' => 'sun', 'Hund17022' => 'sun', 'Lalb_Chr02g0152131' => 'lal', 'Lalb_Chr05g0225371' => 'lal', 'Lalb_Chr07g0189841' => 'lal', 'Lalb_Chr07g0192961' => 'lal', 'Lalb_Chr12g0208221' => 'lal', 'Lalb_Chr13g0291211' => 'lal', 'Lalb_Chr13g0291781' => 'lal', 'Lalb_Chr18g0044651' => 'lal', 'Lalb_Chr21g0313731' => 'lal', 'Lj1g0022533' => 'lja', 'Lj2A18T50' => 'lonja', 'Lj2A92G93' => 'lonja', 'Lj3A965T73' => 'lonja', 'Lj3g0000673' => 'lja', 'Lj3g0002666' => 'lja', 'Lj4g0016985' => 'lja', 'Lj5g0003625' => 'lja', 'Lj7A529G36' => 'lonja', 'Lj9A569T49' => 'lonja', 'Lj9A604T63' => 'lonja', 'Lsat_1_v5_gn_3_132060' => 'lsa', 'Lsat_1_v5_gn_4_68941' => 'lsa', 'Lsat_1_v5_gn_5_95580' => 'lsa', 'Lsat_1_v5_gn_7_161' => 'lsa', 'Lsat_1_v5_gn_7_7041' => 'lsa', 'Lsat_1_v5_gn_9_33481' => 'lsa', 'Lsat_1_v5_gn_9_68260' => 'lsa', 'Manes.01G073100' => 'mes', 'Manes.01G266300' => 'mes', 'Manes.02G033300' => 'mes', 'Manes.05G017900' => 'mes', 'Manes.05G046100' => 'mes', 'Manes.08G080900' => 'mes', 'Manes.10G049400' => 'mes', 'Mapoly0009s0186' => 'mpo', 'Mapoly0036s0118' => 'mpo', 'Mapoly0101s0046' => 'mpo', 'MBI04_g30218_MAGBIO' => 'mbi', 'MBI04_g35564_MAGBIO' => 'mbi', 'MBI12_g34011_MAGBIO' => 'mbi', 'MBI14_g04655_MAGBIO' => 'mbi', 'MCO07G653' => 'mco', 'MCO10G173' => 'mco', 'MD01G1087100' => 'mdo', 'MD01G1104200' => 'mdo', 'MD02G1205100' => 'mdo', 'MD04G1079200' => 'mdo', 'MD04G1131400' => 'mdo', 'MD07G1121600' => 'mdo', 'MD07G1157300' => 'mdo', 'MD07G1171000' => 'mdo', 'MD12G1144500' => 'mdo', 'Medtr1g094610' => 'mtr', 'Medtr4g021795' => 'mtr', 'Medtr4g023760' => 'mtr', 'Medtr7g118050' => 'mtr', 'MELO3C005582.2' => 'cme', 'MELO3C005989.2' => 'cme', 'MELO3C006192.2' => 'cme', 'MELO3C009248.2' => 'cme', 'MELO3C019817.2' => 'cme', 'Migut.B01625' => 'egut', 'Migut.B01915' => 'egut', 'Migut.F01721' => 'egut', 'Migut.J00314' => 'egut', 'MSTRG.20742' => 'ama', 'MSTRG.8134' => 'ama', 'Nitab4.5_0000096g0010' => 'nta', 'Nitab4.5_0000202g0030' => 'nta', 'Nitab4.5_0000216g0370' => 'nta', 'Nitab4.5_0000457g0230' => 'nta', 'Nitab4.5_0001702g0170' => 'nta', 'Nitab4.5_0003607g0010' => 'nta', 'Nitab4.5_0004917g0020' => 'nta', 'Nitab4.5_0007059g0010' => 'nta', 'Nitab4.5_0007184g0010' => 'nta', 'Nitab4.5_0007346g0020' => 'nta', 'Nn1g00410' => 'nnu', 'Nn1g01252' => 'nnu', 'Nn2g11168' => 'nnu', 'Nn2g13403' => 'nnu', 'Nn2g13760' => 'nnu', 'Nn4g26380' => 'nnu', 'Oeu000806.2' => 'oeu', 'Oeu005788.1' => 'oeu', 'Oeu006900.3' => 'oeu', 'Oeu007797.1' => 'oeu', 'Oeu011932.1' => 'oeu', 'Oeu022739.1' => 'oeu', 'Oeu037918.1' => 'oeu', 'Oeu055490.2' => 'oeu', 'Os01g0844400' => 'osa', 'Os02g0819100' => 'osa', 'Os03g0804300' => 'osa', 'Os05g0458000' => 'osa', 'Os07g0467800' => 'osa', 'Os12g0602200' => 'osa', 'Peaxi162Scf00013g03444' => 'pax', 'Peaxi162Scf00094g01120' => 'pax', 'Peaxi162Scf00191g01211' => 'pax', 'Peaxi162Scf00238g01110' => 'pax', 'Peaxi162Scf00330g00719' => 'pax', 'Peaxi162Scf00627g00018' => 'pax', 'PGR031G2686' => 'pgr', 'PGR042G0809' => 'pgr', 'PGR142G0193' => 'pgr', 'PGSC0003DMG400011066' => 'stu', 'PGSC0003DMG400012041' => 'stu', 'PGSC0003DMG400013678' => 'stu', 'PGSC0003DMG400023477' => 'stu', 'PGSC0003DMG400025956' => 'stu', 'PGSC0003DMG401019151' => 'stu', 'Phvul.006G116400' => 'pvu', 'Phvul.007G097300' => 'pvu', 'Phvul.010G015000' => 'pvu', 'Phvul.010G083900' => 'pvu', 'Potri.001G117100' => 'ptr', 'Potri.002G147300' => 'ptr', 'Potri.003G115600' => 'ptr', 'Potri.006G087400' => 'ptr', 'Potri.010G226100' => 'ptr', 'Potri.014G069200' => 'ptr', 'Potri.014G104000' => 'ptr', 'Potri.016G100200' => 'ptr', 'Pp3c10_20450' => 'ppa', 'Pp3c1_42400' => 'ppa', 'Pp3c3_24390' => 'ppa', 'Pp3c3_2860' => 'ppa', 'PRCOL_00003193' => 'pco', 'Prupe.2G144500' => 'ppe', 'Prupe.2G195700' => 'ppe', 'Prupe.2G209800' => 'ppe', 'Prupe.5G080000' => 'ppe', 'Prupe.6G257900' => 'ppe', 'Psat3g001160' => 'psa', 'Psat6g181880' => 'psa', 'Psat7g233720' => 'psa', 'PSO063G7587' => 'pso', 'PSO339G2145' => 'pso', 'PSO339G3369' => 'pso', 'PSO478G2747' => 'pso', 'PSO513G0140' => 'pso', 'PSO782G1614' => 'pso', 'PSO782G4889' => 'pso', 'PSO782G5485' => 'pso', 'PSO801G0241' => 'pso', 'QL07p048854' => 'qlo', 'QL08p046745' => 'qlo', 'QL08p052606' => 'qlo', 'QL08p053414' => 'qlo', 'QL08p054868' => 'qlo', 'RcHm_v2.0_Chr1g0350251' => 'rch', 'RcHm_v2.0_Chr1g0360851' => 'rch', 'RcHm_v2.0_Chr1g0362791' => 'rch', 'RcHm_v2.0_Chr3g0466281' => 'rch', 'RcHm_v2.0_Chr7g0201481' => 'rch', 'Rhsim01G0148600' => 'rsi', 'Rhsim05G0194400' => 'rsi', 'Rhsim07G0000700' => 'rsi', 'Rhsim07G0000800' => 'rsi', 'Rhsim07G0027900' => 'rsi', 'Rhsim09G0149500' => 'rsi', 'RhsimUnG0186900' => 'rsi', 'Sabra01G0089900' => 'sbr', 'Sabra02G0114700' => 'sbr', 'Sabra02G0116300' => 'sbr', 'Sabra03G0080100' => 'sbr', 'Sabra08G0024300' => 'sbr', 'Sabra10G0174300' => 'sbr', 'Sabra14G0048900' => 'sbr', 'Sabra14G0076500' => 'sbr', 'SalBow5G2513' => 'sbo', 'Sc01g0002300' => 'sci', 'Sc01g0004450' => 'sci', 'Sc06g0001680' => 'sci', 'Sc23g0003580' => 'sci', 'Sed0000913' => 'sed', 'Sed0001655' => 'sed', 'Sed0007745' => 'sed', 'Sed0010951' => 'sed', 'Sed0017599' => 'sed', 'Sed0021405' => 'sed', 'Sed0022810' => 'sed', 'SEGI_07099' => 'sgi', 'SEGI_11931' => 'sgi', 'SEGI_13187' => 'sgi', 'SEGI_29958' => 'sgi', 'SEGI_36351' => 'sgi', 'SGA_v2.0_scaffold126G33770' => 'sas', 'SGA_v2.0_scaffold153G37003' => 'sas', 'SGA_v2.0_scaffold2G01359' => 'sas', 'SGA_v2.0_scaffold5G03064' => 'sas', 'SGA_v2.0_scaffold95G28903' => 'sas', 'SHI12701' => 'shi', 'SHI26410' => 'shi', 'SHI38997' => 'shi', 'SHI53759' => 'shi', 'SHI53886' => 'shi', 'SHI54714' => 'shi', 'SMO011G0041' => 'smo', 'SMO146G0251' => 'smo', 'SMO160G0004' => 'smo', 'SMO174G0057' => 'smo', 'SMO244G0089' => 'smo', 'SMO296G0011' => 'smo', 'Solyc01g091280.3' => 'sly', 'Solyc05g047610.3' => 'sly', 'Solyc05g047640.3' => 'sly', 'Solyc05g055630.3' => 'sly', 'Solyc10g018160.2' => 'sly', 'Solyc10g084820.2' => 'sly', 'Solyc10g086565.2' => 'sly', 'Sopen01g037030' => 'spe', 'Sopen05g027920' => 'spe', 'Sopen05g034070' => 'spe', 'Sopen10g007260' => 'spe', 'Sopen10g034260' => 'spe', 'Sopen10g035950' => 'spe', 'Sp3g07710' => 'spa', 'Sp4g27420' => 'spa', 'Sp5g02450' => 'spa', 'Sp6g01280' => 'spa', 'Sp6g38480' => 'spa', 'Sp7g20780' => 'spa', 'TAR374G1413' => 'tar', 'TAR623G1777' => 'tar', 'TAR629G2370' => 'tar', 'TAR633G1759' => 'tar', 'TAR636G3387' => 'tar', 'THA.LOC104802447' => 'tha', 'THA.LOC104813916' => 'tha', 'THA.LOC104816423' => 'tha', 'THA.LOC104817246' => 'tha', 'THA.LOC104825895' => 'tha', 'Thecc.01G335200' => 'tca', 'Thecc.01G377400' => 'tca', 'Thecc.03G262200' => 'tca', 'Thecc.05G036800' => 'tca', 'Thecc.10G080500' => 'tca', 'Thecc.10G080800' => 'tca', 'Thhalv10001560m.g' => 'esa', 'Thhalv10006120m.g' => 'esa', 'Thhalv10014375m.g' => 'esa', 'Thhalv10021264m.g' => 'esa', 'Thhalv10028856m.g' => 'esa', 'TPR.G1914' => 'tpr', 'TPR.G4757' => 'tpr', 'TPR.G5595' => 'tpr', 'TWI14G0952' => 'twi', 'TWI14G1307' => 'twi', 'TWI38G2143' => 'twi', 'TWI59G0826' => 'twi', 'TWI77G0527' => 'twi', 'TWI81G0150' => 'twi', 'unitig_21.g21018' => 'ugi', 'unitig_26.g9725' => 'ugi', 'unitig_744.g24653' => 'ugi', 'unitig_749.g13778' => 'ugi', 'unitig_899.g15035' => 'ugi', 'vmacro04296' => 'vma', 'vmacro04852' => 'vma', 'vmacro13404' => 'vma', 'vmacro20169' => 'vma', 'vmacro21014' => 'vma', 'VMungo0331G0237' => 'vmu', 'VMungo0331G0706' => 'vmu', 'VMungo0331G1361' => 'vmu', 'VMungo0331G1489' => 'vmu', 'VMungo0540G1037' => 'vmu', 'VMungo0720G2487' => 'vmu', 'VMungo0720G2721' => 'vmu', 'Zm00001eb086860' => 'zma', 'Zm00001eb104760' => 'zma', 'Zm00001eb148220' => 'zma', 'Zm00001eb259030' => 'zma', 'Zm00001eb289590' => 'zma', 'Zm00001eb420150' => 'zma' ) $gf_id = 'HOM05D000968' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000968' ) $data_identifier = 'HOM05D000968' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 19, 'bol' => (int) 9, 'bra' => (int) 12, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 5, 'ccan' => (int) 7, 'cde' => (int) 5, 'cfa' => (int) 8, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 4, 'dca' => (int) 5, 'din' => (int) 5, 'dzi' => (int) 12, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 25, 'fve' => (int) 5, 'gma' => (int) 9, 'ghi' => (int) 18, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 7, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 5, 'sun' => (int) 2, 'lal' => (int) 9, 'lja' => (int) 5, 'lonja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 9, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 2, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 3, 'stu' => (int) 6, 'pvu' => (int) 4, 'ptr' => (int) 8, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 3, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 1, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 5, 'sas' => (int) 5, 'shi' => (int) 6, 'smo' => (int) 6, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 3, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420150' $species_info = array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ) $local_species = 'cil' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000968', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p31690' => 'bna', 'A03p36040' => 'bna', 'A03p53730' => 'bna', 'A04p01410' => 'bna', 'A05p05420' => 'bna', 'A05p39630' => 'bna', 'A05p39640' => 'bna', 'A09p00970' => 'bna', 'A09p53060' => 'bna', 'A10p31890' => 'bna', 'Aa31LG10G15040' => 'aar', 'Aa31LG1G21090' => 'aar', 'Aa31LG1G26900' => 'aar', 'Aa31LG3G1820' => 'aar', 'Aa31LG5G1100' => 'aar', 'Aa31LG6G4740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2265' => 'aag', 'Actinidia07998' => 'ach', 'Actinidia11266' => 'ach', 'Actinidia12682' => 'ach', 'Actinidia26479' => 'ach', 'Actinidia31406' => 'ach', 'Actinidia32437' => 'ach', 'Actinidia38862' => 'ach', 'Ah.05g174230' => 'amhyb', 'Ah.05g179070' => 'amhyb', 'Ah.05g179090' => 'amhyb', 'Ah.12g059950' => 'amhyb', 'AL3G20480' => 'aly', 'AL4G44520' => 'aly', 'AL5G43110' => 'aly', 'AL6G13890' => 'aly', 'AL6G52620' => 'aly', 'AL7G30830' => 'aly', 'Aqoxy1G00899' => 'aox', 'Aqoxy5G04333' => 'aox', 'Aqoxy7G00641' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3IZ0NN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4EF6AW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W9P8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79GA3M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C43NQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFCU6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G95YVJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCHK29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LU1UG8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX91RN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGB4B1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8DA0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9H7JI' => 'arhy', 'AT3G09320' => 'ath', 'AT3G60800' => 'ath', 'AT4G00840' => 'ath', 'AT4G22750' => 'ath', 'AT5G04270' => 'ath', 'ATR0090G003' => 'atr', 'ATR0559G349' => 'atr', 'ATR0680G261' => 'atr', 'ATR0810G048' => 'atr', 'Atru.chr12.831' => 'acertr', 'Atru.chr5.303' => 'acertr', 'Atru.chr5.748' => 'acertr', 'Atru.chr8.1999' => 'acertr', 'Atru.chr9.1436' => 'acertr', 'AUR62004211' => 'cqu', 'AUR62004548' => 'cqu', 'AUR62013637' => 'cqu', 'AUR62022662' => 'cqu', 'AUR62025777' => 'cqu', 'AUR62042386' => 'cqu', 'BcaB01g02310' => 'bca', 'BcaB01g06062' => 'bca', 'BcaB02g08975' => 'bca', 'BcaB02g08980' => 'bca', 'BcaC01g04228' => 'bca', 'BcaC01g06830' => 'bca', 'BcaC02g10186' => 'bca', 'BcaC02g12214' => 'bca', 'BcaC04g24101' => 'bca', 'BcaC05g29520' => 'bca', 'BcaC05g29661' => 'bca', 'BcaC06g32130' => 'bca', 'BcaC06g32131' => 'bca', 'BcaC07g40601' => 'bca', 'BcaC07g42641' => 'bca', 'BcaNung01038' => 'bca', 'BcaNung01676' => 'bca', 'BcaNung02480' => 'bca', 'BcaNung07376' => 'bca', 'BolC3t16146H' => 'bol', 'BolC3t16637H' => 'bol', 'BolC4t22257H' => 'bol', 'BolC4t24728H' => 'bol', 'BolC5t34517H' => 'bol', 'BolC7t45703H' => 'bol', 'BolC8t51166H' => 'bol', 'BolC9t53038H' => 'bol', 'BolC9t60000H' => 'bol', 'BraA01t01345Z' => 'bra', 'BraA01t01346Z' => 'bra', 'BraA01t01348Z' => 'bra', 'BraA03t12347Z' => 'bra', 'BraA03t12775Z' => 'bra', 'BraA03t14439Z' => 'bra', 'BraA04t15860Z' => 'bra', 'BraA05t19511Z' => 'bra', 'BraA05t22746Z' => 'bra', 'BraA09t35767Z' => 'bra', 'BraA09t40732Z' => 'bra', 'BraA10t45233Z' => 'bra', 'C03p38720' => 'bna', 'C03p43680' => 'bna', 'C04p06350' => 'bna', 'C04p31800' => 'bna', 'C05p58680' => 'bna', 'C07p52110' => 'bna', 'C08p35760' => 'bna', 'C09p01050' => 'bna', 'C09p72600' => 'bna', 'CAN.G106.2' => 'can', 'CAN.G1482.1' => 'can', 'CAN.G324.12' => 'can', 'CAN.G388.20' => 'can', 'CAN.G412.7' => 'can', 'CAN.G694.32' => 'can', 'CAN.G92.12' => 'can', 'CANSAT11G2353' => 'cansat', 'CANSAT21G1398' => 'cansat', 'CANSAT56G2456' => 'cansat', 'CANSAT56G3031' => 'cansat', 'CANSAT56G4539' => 'cansat', 'CARHR083680' => 'chi', 'CARHR171190' => 'chi', 'CARHR209010' => 'chi', 'CARHR229680' => 'chi', 'CARHR249490' => 'chi', 'Carub.0003s0844' => 'cru', 'Carub.0005s2755' => 'cru', 'Carub.0006s0322' => 'cru', 'Carub.0006s3586' => 'cru', 'Carub.0007s1855' => 'cru', 'Ca_07808_v3' => 'car', 'Ca_09535_v3' => 'car', 'Ca_10548_v3' => 'car', 'Ca_19913_v3' => 'car', 'Ca_19916_v3' => 'car', 'Ca_19975_v3' => 'car', 'CBR_g22876' => 'cbr', 'CBR_g22879' => 'cbr', 'CBR_g38491' => 'cbr', 'CBR_g54185' => 'cbr', 'CBR_g54190' => 'cbr', 'Cc02_g11020' => 'ccan', 'Cc02_g23920' => 'ccan', 'Cc02_g39860' => 'ccan', 'Cc02_g39870' => 'ccan', 'Cc03_g06760' => 'ccan', 'Cc06_g02450' => 'ccan', 'Cc09_g09450' => 'ccan', 'CDE02G1959' => 'cde', 'CDE04G0600' => 'cde', 'CDE07G1996' => 'cde', 'CDE07G2078' => 'cde', 'CDE11G0611' => 'cde', 'Cfa001683' => 'cfa', 'Cfa001734' => 'cfa', 'Cfa001737' => 'cfa', 'Cfa003751' => 'cfa', 'Cfa012019' => 'cfa', 'Cfa017353' => 'cfa', 'Cfa017732' => 'cfa', 'Cfa022464' => 'cfa', 'Ciclev10012400m.g' => 'ccl', 'Ciclev10021242m.g' => 'ccl', 'Ciclev10021302m.g' => 'ccl', 'Ciclev10021463m.g' => 'ccl', 'Ciclev10032359m.g' => 'ccl', 'CiPaw.01G081000' => 'cil', 'CiPaw.01G262500' => 'cil', 'CiPaw.01G269800' => 'cil', 'CiPaw.02G168400' => 'cil', 'CiPaw.05G119500' => 'cil', 'CiPaw.11G147300' => 'cil', 'ClCG01G003630' => 'cla', 'ClCG05G000510' => 'cla', 'ClCG05G002300' => 'cla', 'ClCG08G007650' => 'cla', 'ClCG10G021250' => 'cla', 'COL.COLO4_06218' => 'col', 'COL.COLO4_12538' => 'col', 'COL.COLO4_14775' => 'col', 'COL.COLO4_23875' => 'col', 'Cpa.g.sc141.16' => 'cpa', 'Cpa.g.sc169.16' => 'cpa', 'Cpa.g.sc244.4' => 'cpa', 'Cpa.g.sc244.5' => 'cpa', 'Cpa.g.sc29.87' => 'cpa', 'Cpa.g.sc53.115' => 'cpa', 'Cre03.g207502' => 'cre', 'Cre06.g277000' => 'cre', 'Cre09.g394050' => 'cre', 'CsaV3_3G007680' => 'csa', 'CsaV3_3G009710' => 'csa', 'CsaV3_3G034790' => 'csa', 'CsaV3_5G003750' => 'csa', 'CsaV3_6G036620' => 'csa', 'CSS0002288' => 'camsi', 'CSS0011250' => 'camsi', 'CSS0021619' => 'camsi', 'CSS0046701' => 'camsi', 'DCAR_006420' => 'dca', 'DCAR_006865' => 'dca', 'DCAR_008558' => 'dca', 'DCAR_028754' => 'dca', 'DCAR_028755' => 'dca', 'Dinv31218' => 'din', 'Dinv32371' => 'din', 'Dinv34250' => 'din', 'Dinv37156' => 'din', 'Dinv43704' => 'din', 'Duzib093G1811' => 'dzi', 'Duzib106G1622' => 'dzi', 'Duzib114G0504' => 'dzi', 'Duzib128G0338' => 'dzi', 'Duzib128G1577' => 'dzi', 'Duzib133G0104' => 'dzi', 'Duzib133G1080' => 'dzi', 'Duzib138G0324' => 'dzi', 'Duzib138G0394' => 'dzi', 'Duzib205G0122' => 'dzi', 'Duzib268G1020' => 'dzi', 'Duzib268G1359' => 'dzi', 'ECA232G3929' => 'eca', 'ECA236G2210' => 'eca', 'ECA236G2287' => 'eca', 'ECA240G4568' => 'eca', 'ECA247G0894' => 'eca', 'EL10Ac1g00200' => 'bvu', 'EL10Ac1g00886' => 'bvu', 'EL10As1g23091' => 'bvu', 'EL10As1g23092' => 'bvu', 'Eucgr.A01284' => 'egr', 'Eucgr.A01285' => 'egr', 'Eucgr.D02456' => 'egr', 'Eucgr.E00018' => 'egr', 'Eucgr.E01439' => 'egr', 'Eucgr.G02859' => 'egr', 'FAN01G0168' => 'fan', 'FAN01G0453' => 'fan', 'FAN01G2761' => 'fan', 'FAN02G1239' => 'fan', 'FAN03G0645' => 'fan', 'FAN03G2707' => 'fan', 'FAN03G2978' => 'fan', 'FAN04G0227' => 'fan', 'FAN06G0091' => 'fan', 'FAN06G1418' => 'fan', 'FAN06G1512' => 'fan', 'FAN06G1986' => 'fan', 'FAN06G2905' => 'fan', 'FAN06G4325' => 'fan', 'FAN08G0033' => 'fan', 'FAN09G0642' => 'fan', 'FAN10G1763' => 'fan', 'FAN10G2026' => 'fan', 'FAN10G2513' => 'fan', 'FAN10G3402' => 'fan', 'FAN10G3564' => 'fan', 'FAN10G3987' => 'fan', 'FAN13G1490' => 'fan', 'FAN14G5857' => 'fan', 'FAN18G1188' => 'fan', 'FvH4_5g00750' => 'fve', 'FvH4_6g13410' => 'fve', 'FvH4_7g11740' => 'fve', 'FvH4_7g17410' => 'fve', 'FvH4_7g18860' => 'fve', 'Glyma.01G099100' => 'gma', 'Glyma.01G142300' => 'gma', 'Glyma.03G025500' => 'gma', 'Glyma.03G069700' => 'gma', 'Glyma.03G260000' => 'gma', 'Glyma.09G269800' => 'gma', 'Glyma.10G208700' => 'gma', 'Glyma.18G220400' => 'gma', 'Glyma.20G182000' => 'gma', 'Gohir.A01G221726' => 'ghi', 'Gohir.A07G134600' => 'ghi', 'Gohir.A07G146000' => 'ghi', 'Gohir.A08G173900' => 'ghi', 'Gohir.A09G194900' => 'ghi', 'Gohir.A10G204100' => 'ghi', 'Gohir.A11G080600' => 'ghi', 'Gohir.A11G327500' => 'ghi', 'Gohir.A12G101800' => 'ghi', 'Gohir.D01G211200' => 'ghi', 'Gohir.D07G139200' => 'ghi', 'Gohir.D07G152100' => 'ghi', 'Gohir.D08G192600' => 'ghi', 'Gohir.D09G189200' => 'ghi', 'Gohir.D10G212000' => 'ghi', 'Gohir.D11G085200' => 'ghi', 'Gohir.D11G346400' => 'ghi', 'Gohir.D12G104800' => 'ghi', 'Gorai.001G151300' => 'gra', 'Gorai.001G174100' => 'gra', 'Gorai.002G257000' => 'gra', 'Gorai.004G202600' => 'gra', 'Gorai.007G090900' => 'gra', 'Gorai.007G376700' => 'gra', 'Gorai.008G114100' => 'gra', 'Gorai.011G237900' => 'gra', 'GSVIVG01005450001' => 'vvi', 'GSVIVG01016232001' => 'vvi', 'GSVIVG01026157001' => 'vvi', 'GSVIVG01027419001' => 'vvi', 'GSVIVG01027631001' => 'vvi', 'GSVIVG01034143001' => 'vvi', 'HanXRQChr03g0093921' => 'han', 'HanXRQChr04g0120001' => 'han', 'HanXRQChr04g0122561' => 'han', 'HanXRQChr09g0246851' => 'han', 'HanXRQChr10g0293311' => 'han', 'HanXRQChr13g0425231' => 'han', 'HanXRQChr16g0532571' => 'han', 'Haze_09050' => 'cav', 'Haze_15715' => 'cav', 'Haze_15716' => 'cav', 'Haze_16803' => 'cav', 'Haze_16850' => 'cav', 'Hma1.2p1_0301F.1_g118655' => 'hma', 'Hma1.2p1_0309F.1_g120590' => 'hma', 'Hma1.2p1_0936F.1_g238900' => 'hma', 'Hma1.2p1_3552F.1_g336740' => 'hma', 'HPP92_003520' => 'vpl', 'HPP92_006628' => 'vpl', 'HPP92_006645' => 'vpl', 'HPP92_014669' => 'vpl', 'HPP92_015077' => 'vpl', 'Hund16742' => 'sun', 'Hund17022' => 'sun', 'Lalb_Chr02g0152131' => 'lal', 'Lalb_Chr05g0225371' => 'lal', 'Lalb_Chr07g0189841' => 'lal', 'Lalb_Chr07g0192961' => 'lal', 'Lalb_Chr12g0208221' => 'lal', 'Lalb_Chr13g0291211' => 'lal', 'Lalb_Chr13g0291781' => 'lal', 'Lalb_Chr18g0044651' => 'lal', 'Lalb_Chr21g0313731' => 'lal', 'Lj1g0022533' => 'lja', 'Lj2A18T50' => 'lonja', 'Lj2A92G93' => 'lonja', 'Lj3A965T73' => 'lonja', 'Lj3g0000673' => 'lja', 'Lj3g0002666' => 'lja', 'Lj4g0016985' => 'lja', 'Lj5g0003625' => 'lja', 'Lj7A529G36' => 'lonja', 'Lj9A569T49' => 'lonja', 'Lj9A604T63' => 'lonja', 'Lsat_1_v5_gn_3_132060' => 'lsa', 'Lsat_1_v5_gn_4_68941' => 'lsa', 'Lsat_1_v5_gn_5_95580' => 'lsa', 'Lsat_1_v5_gn_7_161' => 'lsa', 'Lsat_1_v5_gn_7_7041' => 'lsa', 'Lsat_1_v5_gn_9_33481' => 'lsa', 'Lsat_1_v5_gn_9_68260' => 'lsa', 'Manes.01G073100' => 'mes', 'Manes.01G266300' => 'mes', 'Manes.02G033300' => 'mes', 'Manes.05G017900' => 'mes', 'Manes.05G046100' => 'mes', 'Manes.08G080900' => 'mes', 'Manes.10G049400' => 'mes', 'Mapoly0009s0186' => 'mpo', 'Mapoly0036s0118' => 'mpo', 'Mapoly0101s0046' => 'mpo', 'MBI04_g30218_MAGBIO' => 'mbi', 'MBI04_g35564_MAGBIO' => 'mbi', 'MBI12_g34011_MAGBIO' => 'mbi', 'MBI14_g04655_MAGBIO' => 'mbi', 'MCO07G653' => 'mco', 'MCO10G173' => 'mco', 'MD01G1087100' => 'mdo', 'MD01G1104200' => 'mdo', 'MD02G1205100' => 'mdo', 'MD04G1079200' => 'mdo', 'MD04G1131400' => 'mdo', 'MD07G1121600' => 'mdo', 'MD07G1157300' => 'mdo', 'MD07G1171000' => 'mdo', 'MD12G1144500' => 'mdo', 'Medtr1g094610' => 'mtr', 'Medtr4g021795' => 'mtr', 'Medtr4g023760' => 'mtr', 'Medtr7g118050' => 'mtr', 'MELO3C005582.2' => 'cme', 'MELO3C005989.2' => 'cme', 'MELO3C006192.2' => 'cme', 'MELO3C009248.2' => 'cme', 'MELO3C019817.2' => 'cme', 'Migut.B01625' => 'egut', 'Migut.B01915' => 'egut', 'Migut.F01721' => 'egut', 'Migut.J00314' => 'egut', 'MSTRG.20742' => 'ama', 'MSTRG.8134' => 'ama', 'Nitab4.5_0000096g0010' => 'nta', 'Nitab4.5_0000202g0030' => 'nta', 'Nitab4.5_0000216g0370' => 'nta', 'Nitab4.5_0000457g0230' => 'nta', 'Nitab4.5_0001702g0170' => 'nta', 'Nitab4.5_0003607g0010' => 'nta', 'Nitab4.5_0004917g0020' => 'nta', 'Nitab4.5_0007059g0010' => 'nta', 'Nitab4.5_0007184g0010' => 'nta', 'Nitab4.5_0007346g0020' => 'nta', 'Nn1g00410' => 'nnu', 'Nn1g01252' => 'nnu', 'Nn2g11168' => 'nnu', 'Nn2g13403' => 'nnu', 'Nn2g13760' => 'nnu', 'Nn4g26380' => 'nnu', 'Oeu000806.2' => 'oeu', 'Oeu005788.1' => 'oeu', 'Oeu006900.3' => 'oeu', 'Oeu007797.1' => 'oeu', 'Oeu011932.1' => 'oeu', 'Oeu022739.1' => 'oeu', 'Oeu037918.1' => 'oeu', 'Oeu055490.2' => 'oeu', 'Os01g0844400' => 'osa', 'Os02g0819100' => 'osa', 'Os03g0804300' => 'osa', 'Os05g0458000' => 'osa', 'Os07g0467800' => 'osa', 'Os12g0602200' => 'osa', 'Peaxi162Scf00013g03444' => 'pax', 'Peaxi162Scf00094g01120' => 'pax', 'Peaxi162Scf00191g01211' => 'pax', 'Peaxi162Scf00238g01110' => 'pax', 'Peaxi162Scf00330g00719' => 'pax', 'Peaxi162Scf00627g00018' => 'pax', 'PGR031G2686' => 'pgr', 'PGR042G0809' => 'pgr', 'PGR142G0193' => 'pgr', 'PGSC0003DMG400011066' => 'stu', 'PGSC0003DMG400012041' => 'stu', 'PGSC0003DMG400013678' => 'stu', 'PGSC0003DMG400023477' => 'stu', 'PGSC0003DMG400025956' => 'stu', 'PGSC0003DMG401019151' => 'stu', 'Phvul.006G116400' => 'pvu', 'Phvul.007G097300' => 'pvu', 'Phvul.010G015000' => 'pvu', 'Phvul.010G083900' => 'pvu', 'Potri.001G117100' => 'ptr', 'Potri.002G147300' => 'ptr', 'Potri.003G115600' => 'ptr', 'Potri.006G087400' => 'ptr', 'Potri.010G226100' => 'ptr', 'Potri.014G069200' => 'ptr', 'Potri.014G104000' => 'ptr', 'Potri.016G100200' => 'ptr', 'Pp3c10_20450' => 'ppa', 'Pp3c1_42400' => 'ppa', 'Pp3c3_24390' => 'ppa', 'Pp3c3_2860' => 'ppa', 'PRCOL_00003193' => 'pco', 'Prupe.2G144500' => 'ppe', 'Prupe.2G195700' => 'ppe', 'Prupe.2G209800' => 'ppe', 'Prupe.5G080000' => 'ppe', 'Prupe.6G257900' => 'ppe', 'Psat3g001160' => 'psa', 'Psat6g181880' => 'psa', 'Psat7g233720' => 'psa', 'PSO063G7587' => 'pso', 'PSO339G2145' => 'pso', 'PSO339G3369' => 'pso', 'PSO478G2747' => 'pso', 'PSO513G0140' => 'pso', 'PSO782G1614' => 'pso', 'PSO782G4889' => 'pso', 'PSO782G5485' => 'pso', 'PSO801G0241' => 'pso', 'QL07p048854' => 'qlo', 'QL08p046745' => 'qlo', 'QL08p052606' => 'qlo', 'QL08p053414' => 'qlo', 'QL08p054868' => 'qlo', 'RcHm_v2.0_Chr1g0350251' => 'rch', 'RcHm_v2.0_Chr1g0360851' => 'rch', 'RcHm_v2.0_Chr1g0362791' => 'rch', 'RcHm_v2.0_Chr3g0466281' => 'rch', 'RcHm_v2.0_Chr7g0201481' => 'rch', 'Rhsim01G0148600' => 'rsi', 'Rhsim05G0194400' => 'rsi', 'Rhsim07G0000700' => 'rsi', 'Rhsim07G0000800' => 'rsi', 'Rhsim07G0027900' => 'rsi', 'Rhsim09G0149500' => 'rsi', 'RhsimUnG0186900' => 'rsi', 'Sabra01G0089900' => 'sbr', 'Sabra02G0114700' => 'sbr', 'Sabra02G0116300' => 'sbr', 'Sabra03G0080100' => 'sbr', 'Sabra08G0024300' => 'sbr', 'Sabra10G0174300' => 'sbr', 'Sabra14G0048900' => 'sbr', 'Sabra14G0076500' => 'sbr', 'SalBow5G2513' => 'sbo', 'Sc01g0002300' => 'sci', 'Sc01g0004450' => 'sci', 'Sc06g0001680' => 'sci', 'Sc23g0003580' => 'sci', 'Sed0000913' => 'sed', 'Sed0001655' => 'sed', 'Sed0007745' => 'sed', 'Sed0010951' => 'sed', 'Sed0017599' => 'sed', 'Sed0021405' => 'sed', 'Sed0022810' => 'sed', 'SEGI_07099' => 'sgi', 'SEGI_11931' => 'sgi', 'SEGI_13187' => 'sgi', 'SEGI_29958' => 'sgi', 'SEGI_36351' => 'sgi', 'SGA_v2.0_scaffold126G33770' => 'sas', 'SGA_v2.0_scaffold153G37003' => 'sas', 'SGA_v2.0_scaffold2G01359' => 'sas', 'SGA_v2.0_scaffold5G03064' => 'sas', 'SGA_v2.0_scaffold95G28903' => 'sas', 'SHI12701' => 'shi', 'SHI26410' => 'shi', 'SHI38997' => 'shi', 'SHI53759' => 'shi', 'SHI53886' => 'shi', 'SHI54714' => 'shi', 'SMO011G0041' => 'smo', 'SMO146G0251' => 'smo', 'SMO160G0004' => 'smo', 'SMO174G0057' => 'smo', 'SMO244G0089' => 'smo', 'SMO296G0011' => 'smo', 'Solyc01g091280.3' => 'sly', 'Solyc05g047610.3' => 'sly', 'Solyc05g047640.3' => 'sly', 'Solyc05g055630.3' => 'sly', 'Solyc10g018160.2' => 'sly', 'Solyc10g084820.2' => 'sly', 'Solyc10g086565.2' => 'sly', 'Sopen01g037030' => 'spe', 'Sopen05g027920' => 'spe', 'Sopen05g034070' => 'spe', 'Sopen10g007260' => 'spe', 'Sopen10g034260' => 'spe', 'Sopen10g035950' => 'spe', 'Sp3g07710' => 'spa', 'Sp4g27420' => 'spa', 'Sp5g02450' => 'spa', 'Sp6g01280' => 'spa', 'Sp6g38480' => 'spa', 'Sp7g20780' => 'spa', 'TAR374G1413' => 'tar', 'TAR623G1777' => 'tar', 'TAR629G2370' => 'tar', 'TAR633G1759' => 'tar', 'TAR636G3387' => 'tar', 'THA.LOC104802447' => 'tha', 'THA.LOC104813916' => 'tha', 'THA.LOC104816423' => 'tha', 'THA.LOC104817246' => 'tha', 'THA.LOC104825895' => 'tha', 'Thecc.01G335200' => 'tca', 'Thecc.01G377400' => 'tca', 'Thecc.03G262200' => 'tca', 'Thecc.05G036800' => 'tca', 'Thecc.10G080500' => 'tca', 'Thecc.10G080800' => 'tca', 'Thhalv10001560m.g' => 'esa', 'Thhalv10006120m.g' => 'esa', 'Thhalv10014375m.g' => 'esa', 'Thhalv10021264m.g' => 'esa', 'Thhalv10028856m.g' => 'esa', 'TPR.G1914' => 'tpr', 'TPR.G4757' => 'tpr', 'TPR.G5595' => 'tpr', 'TWI14G0952' => 'twi', 'TWI14G1307' => 'twi', 'TWI38G2143' => 'twi', 'TWI59G0826' => 'twi', 'TWI77G0527' => 'twi', 'TWI81G0150' => 'twi', 'unitig_21.g21018' => 'ugi', 'unitig_26.g9725' => 'ugi', 'unitig_744.g24653' => 'ugi', 'unitig_749.g13778' => 'ugi', 'unitig_899.g15035' => 'ugi', 'vmacro04296' => 'vma', 'vmacro04852' => 'vma', 'vmacro13404' => 'vma', 'vmacro20169' => 'vma', 'vmacro21014' => 'vma', 'VMungo0331G0237' => 'vmu', 'VMungo0331G0706' => 'vmu', 'VMungo0331G1361' => 'vmu', 'VMungo0331G1489' => 'vmu', 'VMungo0540G1037' => 'vmu', 'VMungo0720G2487' => 'vmu', 'VMungo0720G2721' => 'vmu', 'Zm00001eb086860' => 'zma', 'Zm00001eb104760' => 'zma', 'Zm00001eb148220' => 'zma', 'Zm00001eb259030' => 'zma', 'Zm00001eb289590' => 'zma', 'Zm00001eb420150' => 'zma' ), 'gf_id' => 'HOM05D000968', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000968' ), 'data_identifier' => 'HOM05D000968', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000968', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p31690' => 'bna', 'A03p36040' => 'bna', 'A03p53730' => 'bna', 'A04p01410' => 'bna', 'A05p05420' => 'bna', 'A05p39630' => 'bna', 'A05p39640' => 'bna', 'A09p00970' => 'bna', 'A09p53060' => 'bna', 'A10p31890' => 'bna', 'Aa31LG10G15040' => 'aar', 'Aa31LG1G21090' => 'aar', 'Aa31LG1G26900' => 'aar', 'Aa31LG3G1820' => 'aar', 'Aa31LG5G1100' => 'aar', 'Aa31LG6G4740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2265' => 'aag', 'Actinidia07998' => 'ach', 'Actinidia11266' => 'ach', 'Actinidia12682' => 'ach', 'Actinidia26479' => 'ach', 'Actinidia31406' => 'ach', 'Actinidia32437' => 'ach', 'Actinidia38862' => 'ach', 'Ah.05g174230' => 'amhyb', 'Ah.05g179070' => 'amhyb', 'Ah.05g179090' => 'amhyb', 'Ah.12g059950' => 'amhyb', 'AL3G20480' => 'aly', 'AL4G44520' => 'aly', 'AL5G43110' => 'aly', 'AL6G13890' => 'aly', 'AL6G52620' => 'aly', 'AL7G30830' => 'aly', 'Aqoxy1G00899' => 'aox', 'Aqoxy5G04333' => 'aox', 'Aqoxy7G00641' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3IZ0NN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4EF6AW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W9P8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79GA3M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C43NQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFCU6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G95YVJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCHK29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LU1UG8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX91RN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGB4B1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8DA0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9H7JI' => 'arhy', 'AT3G09320' => 'ath', 'AT3G60800' => 'ath', 'AT4G00840' => 'ath', 'AT4G22750' => 'ath', 'AT5G04270' => 'ath', 'ATR0090G003' => 'atr', 'ATR0559G349' => 'atr', 'ATR0680G261' => 'atr', 'ATR0810G048' => 'atr', 'Atru.chr12.831' => 'acertr', 'Atru.chr5.303' => 'acertr', 'Atru.chr5.748' => 'acertr', 'Atru.chr8.1999' => 'acertr', 'Atru.chr9.1436' => 'acertr', 'AUR62004211' => 'cqu', 'AUR62004548' => 'cqu', 'AUR62013637' => 'cqu', 'AUR62022662' => 'cqu', 'AUR62025777' => 'cqu', 'AUR62042386' => 'cqu', 'BcaB01g02310' => 'bca', 'BcaB01g06062' => 'bca', 'BcaB02g08975' => 'bca', 'BcaB02g08980' => 'bca', 'BcaC01g04228' => 'bca', 'BcaC01g06830' => 'bca', 'BcaC02g10186' => 'bca', 'BcaC02g12214' => 'bca', 'BcaC04g24101' => 'bca', 'BcaC05g29520' => 'bca', 'BcaC05g29661' => 'bca', 'BcaC06g32130' => 'bca', 'BcaC06g32131' => 'bca', 'BcaC07g40601' => 'bca', 'BcaC07g42641' => 'bca', 'BcaNung01038' => 'bca', 'BcaNung01676' => 'bca', 'BcaNung02480' => 'bca', 'BcaNung07376' => 'bca', 'BolC3t16146H' => 'bol', 'BolC3t16637H' => 'bol', 'BolC4t22257H' => 'bol', 'BolC4t24728H' => 'bol', 'BolC5t34517H' => 'bol', 'BolC7t45703H' => 'bol', 'BolC8t51166H' => 'bol', 'BolC9t53038H' => 'bol', 'BolC9t60000H' => 'bol', 'BraA01t01345Z' => 'bra', 'BraA01t01346Z' => 'bra', 'BraA01t01348Z' => 'bra', 'BraA03t12347Z' => 'bra', 'BraA03t12775Z' => 'bra', 'BraA03t14439Z' => 'bra', 'BraA04t15860Z' => 'bra', 'BraA05t19511Z' => 'bra', 'BraA05t22746Z' => 'bra', 'BraA09t35767Z' => 'bra', 'BraA09t40732Z' => 'bra', 'BraA10t45233Z' => 'bra', 'C03p38720' => 'bna', 'C03p43680' => 'bna', 'C04p06350' => 'bna', 'C04p31800' => 'bna', 'C05p58680' => 'bna', 'C07p52110' => 'bna', 'C08p35760' => 'bna', 'C09p01050' => 'bna', 'C09p72600' => 'bna', 'CAN.G106.2' => 'can', 'CAN.G1482.1' => 'can', 'CAN.G324.12' => 'can', 'CAN.G388.20' => 'can', 'CAN.G412.7' => 'can', 'CAN.G694.32' => 'can', 'CAN.G92.12' => 'can', 'CANSAT11G2353' => 'cansat', 'CANSAT21G1398' => 'cansat', 'CANSAT56G2456' => 'cansat', 'CANSAT56G3031' => 'cansat', 'CANSAT56G4539' => 'cansat', 'CARHR083680' => 'chi', 'CARHR171190' => 'chi', 'CARHR209010' => 'chi', 'CARHR229680' => 'chi', 'CARHR249490' => 'chi', 'Carub.0003s0844' => 'cru', 'Carub.0005s2755' => 'cru', 'Carub.0006s0322' => 'cru', 'Carub.0006s3586' => 'cru', 'Carub.0007s1855' => 'cru', 'Ca_07808_v3' => 'car', 'Ca_09535_v3' => 'car', 'Ca_10548_v3' => 'car', 'Ca_19913_v3' => 'car', 'Ca_19916_v3' => 'car', 'Ca_19975_v3' => 'car', 'CBR_g22876' => 'cbr', 'CBR_g22879' => 'cbr', 'CBR_g38491' => 'cbr', 'CBR_g54185' => 'cbr', 'CBR_g54190' => 'cbr', 'Cc02_g11020' => 'ccan', 'Cc02_g23920' => 'ccan', 'Cc02_g39860' => 'ccan', 'Cc02_g39870' => 'ccan', 'Cc03_g06760' => 'ccan', 'Cc06_g02450' => 'ccan', 'Cc09_g09450' => 'ccan', 'CDE02G1959' => 'cde', 'CDE04G0600' => 'cde', 'CDE07G1996' => 'cde', 'CDE07G2078' => 'cde', 'CDE11G0611' => 'cde', 'Cfa001683' => 'cfa', 'Cfa001734' => 'cfa', 'Cfa001737' => 'cfa', 'Cfa003751' => 'cfa', 'Cfa012019' => 'cfa', 'Cfa017353' => 'cfa', 'Cfa017732' => 'cfa', 'Cfa022464' => 'cfa', 'Ciclev10012400m.g' => 'ccl', 'Ciclev10021242m.g' => 'ccl', 'Ciclev10021302m.g' => 'ccl', 'Ciclev10021463m.g' => 'ccl', 'Ciclev10032359m.g' => 'ccl', 'CiPaw.01G081000' => 'cil', 'CiPaw.01G262500' => 'cil', 'CiPaw.01G269800' => 'cil', 'CiPaw.02G168400' => 'cil', 'CiPaw.05G119500' => 'cil', 'CiPaw.11G147300' => 'cil', 'ClCG01G003630' => 'cla', 'ClCG05G000510' => 'cla', 'ClCG05G002300' => 'cla', 'ClCG08G007650' => 'cla', 'ClCG10G021250' => 'cla', 'COL.COLO4_06218' => 'col', 'COL.COLO4_12538' => 'col', 'COL.COLO4_14775' => 'col', 'COL.COLO4_23875' => 'col', 'Cpa.g.sc141.16' => 'cpa', 'Cpa.g.sc169.16' => 'cpa', 'Cpa.g.sc244.4' => 'cpa', 'Cpa.g.sc244.5' => 'cpa', 'Cpa.g.sc29.87' => 'cpa', 'Cpa.g.sc53.115' => 'cpa', 'Cre03.g207502' => 'cre', 'Cre06.g277000' => 'cre', 'Cre09.g394050' => 'cre', 'CsaV3_3G007680' => 'csa', 'CsaV3_3G009710' => 'csa', 'CsaV3_3G034790' => 'csa', 'CsaV3_5G003750' => 'csa', 'CsaV3_6G036620' => 'csa', 'CSS0002288' => 'camsi', 'CSS0011250' => 'camsi', 'CSS0021619' => 'camsi', 'CSS0046701' => 'camsi', 'DCAR_006420' => 'dca', 'DCAR_006865' => 'dca', 'DCAR_008558' => 'dca', 'DCAR_028754' => 'dca', 'DCAR_028755' => 'dca', 'Dinv31218' => 'din', 'Dinv32371' => 'din', 'Dinv34250' => 'din', 'Dinv37156' => 'din', 'Dinv43704' => 'din', 'Duzib093G1811' => 'dzi', 'Duzib106G1622' => 'dzi', 'Duzib114G0504' => 'dzi', 'Duzib128G0338' => 'dzi', 'Duzib128G1577' => 'dzi', 'Duzib133G0104' => 'dzi', 'Duzib133G1080' => 'dzi', 'Duzib138G0324' => 'dzi', 'Duzib138G0394' => 'dzi', 'Duzib205G0122' => 'dzi', 'Duzib268G1020' => 'dzi', 'Duzib268G1359' => 'dzi', 'ECA232G3929' => 'eca', 'ECA236G2210' => 'eca', 'ECA236G2287' => 'eca', 'ECA240G4568' => 'eca', 'ECA247G0894' => 'eca', 'EL10Ac1g00200' => 'bvu', 'EL10Ac1g00886' => 'bvu', 'EL10As1g23091' => 'bvu', 'EL10As1g23092' => 'bvu', 'Eucgr.A01284' => 'egr', 'Eucgr.A01285' => 'egr', 'Eucgr.D02456' => 'egr', 'Eucgr.E00018' => 'egr', 'Eucgr.E01439' => 'egr', 'Eucgr.G02859' => 'egr', 'FAN01G0168' => 'fan', 'FAN01G0453' => 'fan', 'FAN01G2761' => 'fan', 'FAN02G1239' => 'fan', 'FAN03G0645' => 'fan', 'FAN03G2707' => 'fan', 'FAN03G2978' => 'fan', 'FAN04G0227' => 'fan', 'FAN06G0091' => 'fan', 'FAN06G1418' => 'fan', 'FAN06G1512' => 'fan', 'FAN06G1986' => 'fan', 'FAN06G2905' => 'fan', 'FAN06G4325' => 'fan', 'FAN08G0033' => 'fan', 'FAN09G0642' => 'fan', 'FAN10G1763' => 'fan', 'FAN10G2026' => 'fan', 'FAN10G2513' => 'fan', 'FAN10G3402' => 'fan', 'FAN10G3564' => 'fan', 'FAN10G3987' => 'fan', 'FAN13G1490' => 'fan', 'FAN14G5857' => 'fan', 'FAN18G1188' => 'fan', 'FvH4_5g00750' => 'fve', 'FvH4_6g13410' => 'fve', 'FvH4_7g11740' => 'fve', 'FvH4_7g17410' => 'fve', 'FvH4_7g18860' => 'fve', 'Glyma.01G099100' => 'gma', 'Glyma.01G142300' => 'gma', 'Glyma.03G025500' => 'gma', 'Glyma.03G069700' => 'gma', 'Glyma.03G260000' => 'gma', 'Glyma.09G269800' => 'gma', 'Glyma.10G208700' => 'gma', 'Glyma.18G220400' => 'gma', 'Glyma.20G182000' => 'gma', 'Gohir.A01G221726' => 'ghi', 'Gohir.A07G134600' => 'ghi', 'Gohir.A07G146000' => 'ghi', 'Gohir.A08G173900' => 'ghi', 'Gohir.A09G194900' => 'ghi', 'Gohir.A10G204100' => 'ghi', 'Gohir.A11G080600' => 'ghi', 'Gohir.A11G327500' => 'ghi', 'Gohir.A12G101800' => 'ghi', 'Gohir.D01G211200' => 'ghi', 'Gohir.D07G139200' => 'ghi', 'Gohir.D07G152100' => 'ghi', 'Gohir.D08G192600' => 'ghi', 'Gohir.D09G189200' => 'ghi', 'Gohir.D10G212000' => 'ghi', 'Gohir.D11G085200' => 'ghi', 'Gohir.D11G346400' => 'ghi', 'Gohir.D12G104800' => 'ghi', 'Gorai.001G151300' => 'gra', 'Gorai.001G174100' => 'gra', 'Gorai.002G257000' => 'gra', 'Gorai.004G202600' => 'gra', 'Gorai.007G090900' => 'gra', 'Gorai.007G376700' => 'gra', 'Gorai.008G114100' => 'gra', 'Gorai.011G237900' => 'gra', 'GSVIVG01005450001' => 'vvi', 'GSVIVG01016232001' => 'vvi', 'GSVIVG01026157001' => 'vvi', 'GSVIVG01027419001' => 'vvi', 'GSVIVG01027631001' => 'vvi', 'GSVIVG01034143001' => 'vvi', 'HanXRQChr03g0093921' => 'han', 'HanXRQChr04g0120001' => 'han', 'HanXRQChr04g0122561' => 'han', 'HanXRQChr09g0246851' => 'han', 'HanXRQChr10g0293311' => 'han', 'HanXRQChr13g0425231' => 'han', 'HanXRQChr16g0532571' => 'han', 'Haze_09050' => 'cav', 'Haze_15715' => 'cav', 'Haze_15716' => 'cav', 'Haze_16803' => 'cav', 'Haze_16850' => 'cav', 'Hma1.2p1_0301F.1_g118655' => 'hma', 'Hma1.2p1_0309F.1_g120590' => 'hma', 'Hma1.2p1_0936F.1_g238900' => 'hma', 'Hma1.2p1_3552F.1_g336740' => 'hma', 'HPP92_003520' => 'vpl', 'HPP92_006628' => 'vpl', 'HPP92_006645' => 'vpl', 'HPP92_014669' => 'vpl', 'HPP92_015077' => 'vpl', 'Hund16742' => 'sun', 'Hund17022' => 'sun', 'Lalb_Chr02g0152131' => 'lal', 'Lalb_Chr05g0225371' => 'lal', 'Lalb_Chr07g0189841' => 'lal', 'Lalb_Chr07g0192961' => 'lal', 'Lalb_Chr12g0208221' => 'lal', 'Lalb_Chr13g0291211' => 'lal', 'Lalb_Chr13g0291781' => 'lal', 'Lalb_Chr18g0044651' => 'lal', 'Lalb_Chr21g0313731' => 'lal', 'Lj1g0022533' => 'lja', 'Lj2A18T50' => 'lonja', 'Lj2A92G93' => 'lonja', 'Lj3A965T73' => 'lonja', 'Lj3g0000673' => 'lja', 'Lj3g0002666' => 'lja', 'Lj4g0016985' => 'lja', 'Lj5g0003625' => 'lja', 'Lj7A529G36' => 'lonja', 'Lj9A569T49' => 'lonja', 'Lj9A604T63' => 'lonja', 'Lsat_1_v5_gn_3_132060' => 'lsa', 'Lsat_1_v5_gn_4_68941' => 'lsa', 'Lsat_1_v5_gn_5_95580' => 'lsa', 'Lsat_1_v5_gn_7_161' => 'lsa', 'Lsat_1_v5_gn_7_7041' => 'lsa', 'Lsat_1_v5_gn_9_33481' => 'lsa', 'Lsat_1_v5_gn_9_68260' => 'lsa', 'Manes.01G073100' => 'mes', 'Manes.01G266300' => 'mes', 'Manes.02G033300' => 'mes', 'Manes.05G017900' => 'mes', 'Manes.05G046100' => 'mes', 'Manes.08G080900' => 'mes', 'Manes.10G049400' => 'mes', 'Mapoly0009s0186' => 'mpo', 'Mapoly0036s0118' => 'mpo', 'Mapoly0101s0046' => 'mpo', 'MBI04_g30218_MAGBIO' => 'mbi', 'MBI04_g35564_MAGBIO' => 'mbi', 'MBI12_g34011_MAGBIO' => 'mbi', 'MBI14_g04655_MAGBIO' => 'mbi', 'MCO07G653' => 'mco', 'MCO10G173' => 'mco', 'MD01G1087100' => 'mdo', 'MD01G1104200' => 'mdo', 'MD02G1205100' => 'mdo', 'MD04G1079200' => 'mdo', 'MD04G1131400' => 'mdo', 'MD07G1121600' => 'mdo', 'MD07G1157300' => 'mdo', 'MD07G1171000' => 'mdo', 'MD12G1144500' => 'mdo', 'Medtr1g094610' => 'mtr', 'Medtr4g021795' => 'mtr', 'Medtr4g023760' => 'mtr', 'Medtr7g118050' => 'mtr', 'MELO3C005582.2' => 'cme', 'MELO3C005989.2' => 'cme', 'MELO3C006192.2' => 'cme', 'MELO3C009248.2' => 'cme', 'MELO3C019817.2' => 'cme', 'Migut.B01625' => 'egut', 'Migut.B01915' => 'egut', 'Migut.F01721' => 'egut', 'Migut.J00314' => 'egut', 'MSTRG.20742' => 'ama', 'MSTRG.8134' => 'ama', 'Nitab4.5_0000096g0010' => 'nta', 'Nitab4.5_0000202g0030' => 'nta', 'Nitab4.5_0000216g0370' => 'nta', 'Nitab4.5_0000457g0230' => 'nta', 'Nitab4.5_0001702g0170' => 'nta', 'Nitab4.5_0003607g0010' => 'nta', 'Nitab4.5_0004917g0020' => 'nta', 'Nitab4.5_0007059g0010' => 'nta', 'Nitab4.5_0007184g0010' => 'nta', 'Nitab4.5_0007346g0020' => 'nta', 'Nn1g00410' => 'nnu', 'Nn1g01252' => 'nnu', 'Nn2g11168' => 'nnu', 'Nn2g13403' => 'nnu', 'Nn2g13760' => 'nnu', 'Nn4g26380' => 'nnu', 'Oeu000806.2' => 'oeu', 'Oeu005788.1' => 'oeu', 'Oeu006900.3' => 'oeu', 'Oeu007797.1' => 'oeu', 'Oeu011932.1' => 'oeu', 'Oeu022739.1' => 'oeu', 'Oeu037918.1' => 'oeu', 'Oeu055490.2' => 'oeu', 'Os01g0844400' => 'osa', 'Os02g0819100' => 'osa', 'Os03g0804300' => 'osa', 'Os05g0458000' => 'osa', 'Os07g0467800' => 'osa', 'Os12g0602200' => 'osa', 'Peaxi162Scf00013g03444' => 'pax', 'Peaxi162Scf00094g01120' => 'pax', 'Peaxi162Scf00191g01211' => 'pax', 'Peaxi162Scf00238g01110' => 'pax', 'Peaxi162Scf00330g00719' => 'pax', 'Peaxi162Scf00627g00018' => 'pax', 'PGR031G2686' => 'pgr', 'PGR042G0809' => 'pgr', 'PGR142G0193' => 'pgr', 'PGSC0003DMG400011066' => 'stu', 'PGSC0003DMG400012041' => 'stu', 'PGSC0003DMG400013678' => 'stu', 'PGSC0003DMG400023477' => 'stu', 'PGSC0003DMG400025956' => 'stu', 'PGSC0003DMG401019151' => 'stu', 'Phvul.006G116400' => 'pvu', 'Phvul.007G097300' => 'pvu', 'Phvul.010G015000' => 'pvu', 'Phvul.010G083900' => 'pvu', 'Potri.001G117100' => 'ptr', 'Potri.002G147300' => 'ptr', 'Potri.003G115600' => 'ptr', 'Potri.006G087400' => 'ptr', 'Potri.010G226100' => 'ptr', 'Potri.014G069200' => 'ptr', 'Potri.014G104000' => 'ptr', 'Potri.016G100200' => 'ptr', 'Pp3c10_20450' => 'ppa', 'Pp3c1_42400' => 'ppa', 'Pp3c3_24390' => 'ppa', 'Pp3c3_2860' => 'ppa', 'PRCOL_00003193' => 'pco', 'Prupe.2G144500' => 'ppe', 'Prupe.2G195700' => 'ppe', 'Prupe.2G209800' => 'ppe', 'Prupe.5G080000' => 'ppe', 'Prupe.6G257900' => 'ppe', 'Psat3g001160' => 'psa', 'Psat6g181880' => 'psa', 'Psat7g233720' => 'psa', 'PSO063G7587' => 'pso', 'PSO339G2145' => 'pso', 'PSO339G3369' => 'pso', 'PSO478G2747' => 'pso', 'PSO513G0140' => 'pso', 'PSO782G1614' => 'pso', 'PSO782G4889' => 'pso', 'PSO782G5485' => 'pso', 'PSO801G0241' => 'pso', 'QL07p048854' => 'qlo', 'QL08p046745' => 'qlo', 'QL08p052606' => 'qlo', 'QL08p053414' => 'qlo', 'QL08p054868' => 'qlo', 'RcHm_v2.0_Chr1g0350251' => 'rch', 'RcHm_v2.0_Chr1g0360851' => 'rch', 'RcHm_v2.0_Chr1g0362791' => 'rch', 'RcHm_v2.0_Chr3g0466281' => 'rch', 'RcHm_v2.0_Chr7g0201481' => 'rch', 'Rhsim01G0148600' => 'rsi', 'Rhsim05G0194400' => 'rsi', 'Rhsim07G0000700' => 'rsi', 'Rhsim07G0000800' => 'rsi', 'Rhsim07G0027900' => 'rsi', 'Rhsim09G0149500' => 'rsi', 'RhsimUnG0186900' => 'rsi', 'Sabra01G0089900' => 'sbr', 'Sabra02G0114700' => 'sbr', 'Sabra02G0116300' => 'sbr', 'Sabra03G0080100' => 'sbr', 'Sabra08G0024300' => 'sbr', 'Sabra10G0174300' => 'sbr', 'Sabra14G0048900' => 'sbr', 'Sabra14G0076500' => 'sbr', 'SalBow5G2513' => 'sbo', 'Sc01g0002300' => 'sci', 'Sc01g0004450' => 'sci', 'Sc06g0001680' => 'sci', 'Sc23g0003580' => 'sci', 'Sed0000913' => 'sed', 'Sed0001655' => 'sed', 'Sed0007745' => 'sed', 'Sed0010951' => 'sed', 'Sed0017599' => 'sed', 'Sed0021405' => 'sed', 'Sed0022810' => 'sed', 'SEGI_07099' => 'sgi', 'SEGI_11931' => 'sgi', 'SEGI_13187' => 'sgi', 'SEGI_29958' => 'sgi', 'SEGI_36351' => 'sgi', 'SGA_v2.0_scaffold126G33770' => 'sas', 'SGA_v2.0_scaffold153G37003' => 'sas', 'SGA_v2.0_scaffold2G01359' => 'sas', 'SGA_v2.0_scaffold5G03064' => 'sas', 'SGA_v2.0_scaffold95G28903' => 'sas', 'SHI12701' => 'shi', 'SHI26410' => 'shi', 'SHI38997' => 'shi', 'SHI53759' => 'shi', 'SHI53886' => 'shi', 'SHI54714' => 'shi', 'SMO011G0041' => 'smo', 'SMO146G0251' => 'smo', 'SMO160G0004' => 'smo', 'SMO174G0057' => 'smo', 'SMO244G0089' => 'smo', 'SMO296G0011' => 'smo', 'Solyc01g091280.3' => 'sly', 'Solyc05g047610.3' => 'sly', 'Solyc05g047640.3' => 'sly', 'Solyc05g055630.3' => 'sly', 'Solyc10g018160.2' => 'sly', 'Solyc10g084820.2' => 'sly', 'Solyc10g086565.2' => 'sly', 'Sopen01g037030' => 'spe', 'Sopen05g027920' => 'spe', 'Sopen05g034070' => 'spe', 'Sopen10g007260' => 'spe', 'Sopen10g034260' => 'spe', 'Sopen10g035950' => 'spe', 'Sp3g07710' => 'spa', 'Sp4g27420' => 'spa', 'Sp5g02450' => 'spa', 'Sp6g01280' => 'spa', 'Sp6g38480' => 'spa', 'Sp7g20780' => 'spa', 'TAR374G1413' => 'tar', 'TAR623G1777' => 'tar', 'TAR629G2370' => 'tar', 'TAR633G1759' => 'tar', 'TAR636G3387' => 'tar', 'THA.LOC104802447' => 'tha', 'THA.LOC104813916' => 'tha', 'THA.LOC104816423' => 'tha', 'THA.LOC104817246' => 'tha', 'THA.LOC104825895' => 'tha', 'Thecc.01G335200' => 'tca', 'Thecc.01G377400' => 'tca', 'Thecc.03G262200' => 'tca', 'Thecc.05G036800' => 'tca', 'Thecc.10G080500' => 'tca', 'Thecc.10G080800' => 'tca', 'Thhalv10001560m.g' => 'esa', 'Thhalv10006120m.g' => 'esa', 'Thhalv10014375m.g' => 'esa', 'Thhalv10021264m.g' => 'esa', 'Thhalv10028856m.g' => 'esa', 'TPR.G1914' => 'tpr', 'TPR.G4757' => 'tpr', 'TPR.G5595' => 'tpr', 'TWI14G0952' => 'twi', 'TWI14G1307' => 'twi', 'TWI38G2143' => 'twi', 'TWI59G0826' => 'twi', 'TWI77G0527' => 'twi', 'TWI81G0150' => 'twi', 'unitig_21.g21018' => 'ugi', 'unitig_26.g9725' => 'ugi', 'unitig_744.g24653' => 'ugi', 'unitig_749.g13778' => 'ugi', 'unitig_899.g15035' => 'ugi', 'vmacro04296' => 'vma', 'vmacro04852' => 'vma', 'vmacro13404' => 'vma', 'vmacro20169' => 'vma', 'vmacro21014' => 'vma', 'VMungo0331G0237' => 'vmu', 'VMungo0331G0706' => 'vmu', 'VMungo0331G1361' => 'vmu', 'VMungo0331G1489' => 'vmu', 'VMungo0540G1037' => 'vmu', 'VMungo0720G2487' => 'vmu', 'VMungo0720G2721' => 'vmu', 'Zm00001eb086860' => 'zma', 'Zm00001eb104760' => 'zma', 'Zm00001eb148220' => 'zma', 'Zm00001eb259030' => 'zma', 'Zm00001eb289590' => 'zma', 'Zm00001eb420150' => 'zma' ) $gf_id = 'HOM05D000968' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000968' ) $data_identifier = 'HOM05D000968' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 19, 'bol' => (int) 9, 'bra' => (int) 12, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 5, 'ccan' => (int) 7, 'cde' => (int) 5, 'cfa' => (int) 8, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 4, 'dca' => (int) 5, 'din' => (int) 5, 'dzi' => (int) 12, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 25, 'fve' => (int) 5, 'gma' => (int) 9, 'ghi' => (int) 18, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 7, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 5, 'sun' => (int) 2, 'lal' => (int) 9, 'lja' => (int) 5, 'lonja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 9, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 2, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 3, 'stu' => (int) 6, 'pvu' => (int) 4, 'ptr' => (int) 8, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 3, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 1, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 5, 'sas' => (int) 5, 'shi' => (int) 6, 'smo' => (int) 6, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 3, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420150' $species_info = array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ) $local_species = 'cde' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000968', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p31690' => 'bna', 'A03p36040' => 'bna', 'A03p53730' => 'bna', 'A04p01410' => 'bna', 'A05p05420' => 'bna', 'A05p39630' => 'bna', 'A05p39640' => 'bna', 'A09p00970' => 'bna', 'A09p53060' => 'bna', 'A10p31890' => 'bna', 'Aa31LG10G15040' => 'aar', 'Aa31LG1G21090' => 'aar', 'Aa31LG1G26900' => 'aar', 'Aa31LG3G1820' => 'aar', 'Aa31LG5G1100' => 'aar', 'Aa31LG6G4740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2265' => 'aag', 'Actinidia07998' => 'ach', 'Actinidia11266' => 'ach', 'Actinidia12682' => 'ach', 'Actinidia26479' => 'ach', 'Actinidia31406' => 'ach', 'Actinidia32437' => 'ach', 'Actinidia38862' => 'ach', 'Ah.05g174230' => 'amhyb', 'Ah.05g179070' => 'amhyb', 'Ah.05g179090' => 'amhyb', 'Ah.12g059950' => 'amhyb', 'AL3G20480' => 'aly', 'AL4G44520' => 'aly', 'AL5G43110' => 'aly', 'AL6G13890' => 'aly', 'AL6G52620' => 'aly', 'AL7G30830' => 'aly', 'Aqoxy1G00899' => 'aox', 'Aqoxy5G04333' => 'aox', 'Aqoxy7G00641' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3IZ0NN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4EF6AW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W9P8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79GA3M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C43NQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFCU6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G95YVJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCHK29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LU1UG8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX91RN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGB4B1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8DA0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9H7JI' => 'arhy', 'AT3G09320' => 'ath', 'AT3G60800' => 'ath', 'AT4G00840' => 'ath', 'AT4G22750' => 'ath', 'AT5G04270' => 'ath', 'ATR0090G003' => 'atr', 'ATR0559G349' => 'atr', 'ATR0680G261' => 'atr', 'ATR0810G048' => 'atr', 'Atru.chr12.831' => 'acertr', 'Atru.chr5.303' => 'acertr', 'Atru.chr5.748' => 'acertr', 'Atru.chr8.1999' => 'acertr', 'Atru.chr9.1436' => 'acertr', 'AUR62004211' => 'cqu', 'AUR62004548' => 'cqu', 'AUR62013637' => 'cqu', 'AUR62022662' => 'cqu', 'AUR62025777' => 'cqu', 'AUR62042386' => 'cqu', 'BcaB01g02310' => 'bca', 'BcaB01g06062' => 'bca', 'BcaB02g08975' => 'bca', 'BcaB02g08980' => 'bca', 'BcaC01g04228' => 'bca', 'BcaC01g06830' => 'bca', 'BcaC02g10186' => 'bca', 'BcaC02g12214' => 'bca', 'BcaC04g24101' => 'bca', 'BcaC05g29520' => 'bca', 'BcaC05g29661' => 'bca', 'BcaC06g32130' => 'bca', 'BcaC06g32131' => 'bca', 'BcaC07g40601' => 'bca', 'BcaC07g42641' => 'bca', 'BcaNung01038' => 'bca', 'BcaNung01676' => 'bca', 'BcaNung02480' => 'bca', 'BcaNung07376' => 'bca', 'BolC3t16146H' => 'bol', 'BolC3t16637H' => 'bol', 'BolC4t22257H' => 'bol', 'BolC4t24728H' => 'bol', 'BolC5t34517H' => 'bol', 'BolC7t45703H' => 'bol', 'BolC8t51166H' => 'bol', 'BolC9t53038H' => 'bol', 'BolC9t60000H' => 'bol', 'BraA01t01345Z' => 'bra', 'BraA01t01346Z' => 'bra', 'BraA01t01348Z' => 'bra', 'BraA03t12347Z' => 'bra', 'BraA03t12775Z' => 'bra', 'BraA03t14439Z' => 'bra', 'BraA04t15860Z' => 'bra', 'BraA05t19511Z' => 'bra', 'BraA05t22746Z' => 'bra', 'BraA09t35767Z' => 'bra', 'BraA09t40732Z' => 'bra', 'BraA10t45233Z' => 'bra', 'C03p38720' => 'bna', 'C03p43680' => 'bna', 'C04p06350' => 'bna', 'C04p31800' => 'bna', 'C05p58680' => 'bna', 'C07p52110' => 'bna', 'C08p35760' => 'bna', 'C09p01050' => 'bna', 'C09p72600' => 'bna', 'CAN.G106.2' => 'can', 'CAN.G1482.1' => 'can', 'CAN.G324.12' => 'can', 'CAN.G388.20' => 'can', 'CAN.G412.7' => 'can', 'CAN.G694.32' => 'can', 'CAN.G92.12' => 'can', 'CANSAT11G2353' => 'cansat', 'CANSAT21G1398' => 'cansat', 'CANSAT56G2456' => 'cansat', 'CANSAT56G3031' => 'cansat', 'CANSAT56G4539' => 'cansat', 'CARHR083680' => 'chi', 'CARHR171190' => 'chi', 'CARHR209010' => 'chi', 'CARHR229680' => 'chi', 'CARHR249490' => 'chi', 'Carub.0003s0844' => 'cru', 'Carub.0005s2755' => 'cru', 'Carub.0006s0322' => 'cru', 'Carub.0006s3586' => 'cru', 'Carub.0007s1855' => 'cru', 'Ca_07808_v3' => 'car', 'Ca_09535_v3' => 'car', 'Ca_10548_v3' => 'car', 'Ca_19913_v3' => 'car', 'Ca_19916_v3' => 'car', 'Ca_19975_v3' => 'car', 'CBR_g22876' => 'cbr', 'CBR_g22879' => 'cbr', 'CBR_g38491' => 'cbr', 'CBR_g54185' => 'cbr', 'CBR_g54190' => 'cbr', 'Cc02_g11020' => 'ccan', 'Cc02_g23920' => 'ccan', 'Cc02_g39860' => 'ccan', 'Cc02_g39870' => 'ccan', 'Cc03_g06760' => 'ccan', 'Cc06_g02450' => 'ccan', 'Cc09_g09450' => 'ccan', 'CDE02G1959' => 'cde', 'CDE04G0600' => 'cde', 'CDE07G1996' => 'cde', 'CDE07G2078' => 'cde', 'CDE11G0611' => 'cde', 'Cfa001683' => 'cfa', 'Cfa001734' => 'cfa', 'Cfa001737' => 'cfa', 'Cfa003751' => 'cfa', 'Cfa012019' => 'cfa', 'Cfa017353' => 'cfa', 'Cfa017732' => 'cfa', 'Cfa022464' => 'cfa', 'Ciclev10012400m.g' => 'ccl', 'Ciclev10021242m.g' => 'ccl', 'Ciclev10021302m.g' => 'ccl', 'Ciclev10021463m.g' => 'ccl', 'Ciclev10032359m.g' => 'ccl', 'CiPaw.01G081000' => 'cil', 'CiPaw.01G262500' => 'cil', 'CiPaw.01G269800' => 'cil', 'CiPaw.02G168400' => 'cil', 'CiPaw.05G119500' => 'cil', 'CiPaw.11G147300' => 'cil', 'ClCG01G003630' => 'cla', 'ClCG05G000510' => 'cla', 'ClCG05G002300' => 'cla', 'ClCG08G007650' => 'cla', 'ClCG10G021250' => 'cla', 'COL.COLO4_06218' => 'col', 'COL.COLO4_12538' => 'col', 'COL.COLO4_14775' => 'col', 'COL.COLO4_23875' => 'col', 'Cpa.g.sc141.16' => 'cpa', 'Cpa.g.sc169.16' => 'cpa', 'Cpa.g.sc244.4' => 'cpa', 'Cpa.g.sc244.5' => 'cpa', 'Cpa.g.sc29.87' => 'cpa', 'Cpa.g.sc53.115' => 'cpa', 'Cre03.g207502' => 'cre', 'Cre06.g277000' => 'cre', 'Cre09.g394050' => 'cre', 'CsaV3_3G007680' => 'csa', 'CsaV3_3G009710' => 'csa', 'CsaV3_3G034790' => 'csa', 'CsaV3_5G003750' => 'csa', 'CsaV3_6G036620' => 'csa', 'CSS0002288' => 'camsi', 'CSS0011250' => 'camsi', 'CSS0021619' => 'camsi', 'CSS0046701' => 'camsi', 'DCAR_006420' => 'dca', 'DCAR_006865' => 'dca', 'DCAR_008558' => 'dca', 'DCAR_028754' => 'dca', 'DCAR_028755' => 'dca', 'Dinv31218' => 'din', 'Dinv32371' => 'din', 'Dinv34250' => 'din', 'Dinv37156' => 'din', 'Dinv43704' => 'din', 'Duzib093G1811' => 'dzi', 'Duzib106G1622' => 'dzi', 'Duzib114G0504' => 'dzi', 'Duzib128G0338' => 'dzi', 'Duzib128G1577' => 'dzi', 'Duzib133G0104' => 'dzi', 'Duzib133G1080' => 'dzi', 'Duzib138G0324' => 'dzi', 'Duzib138G0394' => 'dzi', 'Duzib205G0122' => 'dzi', 'Duzib268G1020' => 'dzi', 'Duzib268G1359' => 'dzi', 'ECA232G3929' => 'eca', 'ECA236G2210' => 'eca', 'ECA236G2287' => 'eca', 'ECA240G4568' => 'eca', 'ECA247G0894' => 'eca', 'EL10Ac1g00200' => 'bvu', 'EL10Ac1g00886' => 'bvu', 'EL10As1g23091' => 'bvu', 'EL10As1g23092' => 'bvu', 'Eucgr.A01284' => 'egr', 'Eucgr.A01285' => 'egr', 'Eucgr.D02456' => 'egr', 'Eucgr.E00018' => 'egr', 'Eucgr.E01439' => 'egr', 'Eucgr.G02859' => 'egr', 'FAN01G0168' => 'fan', 'FAN01G0453' => 'fan', 'FAN01G2761' => 'fan', 'FAN02G1239' => 'fan', 'FAN03G0645' => 'fan', 'FAN03G2707' => 'fan', 'FAN03G2978' => 'fan', 'FAN04G0227' => 'fan', 'FAN06G0091' => 'fan', 'FAN06G1418' => 'fan', 'FAN06G1512' => 'fan', 'FAN06G1986' => 'fan', 'FAN06G2905' => 'fan', 'FAN06G4325' => 'fan', 'FAN08G0033' => 'fan', 'FAN09G0642' => 'fan', 'FAN10G1763' => 'fan', 'FAN10G2026' => 'fan', 'FAN10G2513' => 'fan', 'FAN10G3402' => 'fan', 'FAN10G3564' => 'fan', 'FAN10G3987' => 'fan', 'FAN13G1490' => 'fan', 'FAN14G5857' => 'fan', 'FAN18G1188' => 'fan', 'FvH4_5g00750' => 'fve', 'FvH4_6g13410' => 'fve', 'FvH4_7g11740' => 'fve', 'FvH4_7g17410' => 'fve', 'FvH4_7g18860' => 'fve', 'Glyma.01G099100' => 'gma', 'Glyma.01G142300' => 'gma', 'Glyma.03G025500' => 'gma', 'Glyma.03G069700' => 'gma', 'Glyma.03G260000' => 'gma', 'Glyma.09G269800' => 'gma', 'Glyma.10G208700' => 'gma', 'Glyma.18G220400' => 'gma', 'Glyma.20G182000' => 'gma', 'Gohir.A01G221726' => 'ghi', 'Gohir.A07G134600' => 'ghi', 'Gohir.A07G146000' => 'ghi', 'Gohir.A08G173900' => 'ghi', 'Gohir.A09G194900' => 'ghi', 'Gohir.A10G204100' => 'ghi', 'Gohir.A11G080600' => 'ghi', 'Gohir.A11G327500' => 'ghi', 'Gohir.A12G101800' => 'ghi', 'Gohir.D01G211200' => 'ghi', 'Gohir.D07G139200' => 'ghi', 'Gohir.D07G152100' => 'ghi', 'Gohir.D08G192600' => 'ghi', 'Gohir.D09G189200' => 'ghi', 'Gohir.D10G212000' => 'ghi', 'Gohir.D11G085200' => 'ghi', 'Gohir.D11G346400' => 'ghi', 'Gohir.D12G104800' => 'ghi', 'Gorai.001G151300' => 'gra', 'Gorai.001G174100' => 'gra', 'Gorai.002G257000' => 'gra', 'Gorai.004G202600' => 'gra', 'Gorai.007G090900' => 'gra', 'Gorai.007G376700' => 'gra', 'Gorai.008G114100' => 'gra', 'Gorai.011G237900' => 'gra', 'GSVIVG01005450001' => 'vvi', 'GSVIVG01016232001' => 'vvi', 'GSVIVG01026157001' => 'vvi', 'GSVIVG01027419001' => 'vvi', 'GSVIVG01027631001' => 'vvi', 'GSVIVG01034143001' => 'vvi', 'HanXRQChr03g0093921' => 'han', 'HanXRQChr04g0120001' => 'han', 'HanXRQChr04g0122561' => 'han', 'HanXRQChr09g0246851' => 'han', 'HanXRQChr10g0293311' => 'han', 'HanXRQChr13g0425231' => 'han', 'HanXRQChr16g0532571' => 'han', 'Haze_09050' => 'cav', 'Haze_15715' => 'cav', 'Haze_15716' => 'cav', 'Haze_16803' => 'cav', 'Haze_16850' => 'cav', 'Hma1.2p1_0301F.1_g118655' => 'hma', 'Hma1.2p1_0309F.1_g120590' => 'hma', 'Hma1.2p1_0936F.1_g238900' => 'hma', 'Hma1.2p1_3552F.1_g336740' => 'hma', 'HPP92_003520' => 'vpl', 'HPP92_006628' => 'vpl', 'HPP92_006645' => 'vpl', 'HPP92_014669' => 'vpl', 'HPP92_015077' => 'vpl', 'Hund16742' => 'sun', 'Hund17022' => 'sun', 'Lalb_Chr02g0152131' => 'lal', 'Lalb_Chr05g0225371' => 'lal', 'Lalb_Chr07g0189841' => 'lal', 'Lalb_Chr07g0192961' => 'lal', 'Lalb_Chr12g0208221' => 'lal', 'Lalb_Chr13g0291211' => 'lal', 'Lalb_Chr13g0291781' => 'lal', 'Lalb_Chr18g0044651' => 'lal', 'Lalb_Chr21g0313731' => 'lal', 'Lj1g0022533' => 'lja', 'Lj2A18T50' => 'lonja', 'Lj2A92G93' => 'lonja', 'Lj3A965T73' => 'lonja', 'Lj3g0000673' => 'lja', 'Lj3g0002666' => 'lja', 'Lj4g0016985' => 'lja', 'Lj5g0003625' => 'lja', 'Lj7A529G36' => 'lonja', 'Lj9A569T49' => 'lonja', 'Lj9A604T63' => 'lonja', 'Lsat_1_v5_gn_3_132060' => 'lsa', 'Lsat_1_v5_gn_4_68941' => 'lsa', 'Lsat_1_v5_gn_5_95580' => 'lsa', 'Lsat_1_v5_gn_7_161' => 'lsa', 'Lsat_1_v5_gn_7_7041' => 'lsa', 'Lsat_1_v5_gn_9_33481' => 'lsa', 'Lsat_1_v5_gn_9_68260' => 'lsa', 'Manes.01G073100' => 'mes', 'Manes.01G266300' => 'mes', 'Manes.02G033300' => 'mes', 'Manes.05G017900' => 'mes', 'Manes.05G046100' => 'mes', 'Manes.08G080900' => 'mes', 'Manes.10G049400' => 'mes', 'Mapoly0009s0186' => 'mpo', 'Mapoly0036s0118' => 'mpo', 'Mapoly0101s0046' => 'mpo', 'MBI04_g30218_MAGBIO' => 'mbi', 'MBI04_g35564_MAGBIO' => 'mbi', 'MBI12_g34011_MAGBIO' => 'mbi', 'MBI14_g04655_MAGBIO' => 'mbi', 'MCO07G653' => 'mco', 'MCO10G173' => 'mco', 'MD01G1087100' => 'mdo', 'MD01G1104200' => 'mdo', 'MD02G1205100' => 'mdo', 'MD04G1079200' => 'mdo', 'MD04G1131400' => 'mdo', 'MD07G1121600' => 'mdo', 'MD07G1157300' => 'mdo', 'MD07G1171000' => 'mdo', 'MD12G1144500' => 'mdo', 'Medtr1g094610' => 'mtr', 'Medtr4g021795' => 'mtr', 'Medtr4g023760' => 'mtr', 'Medtr7g118050' => 'mtr', 'MELO3C005582.2' => 'cme', 'MELO3C005989.2' => 'cme', 'MELO3C006192.2' => 'cme', 'MELO3C009248.2' => 'cme', 'MELO3C019817.2' => 'cme', 'Migut.B01625' => 'egut', 'Migut.B01915' => 'egut', 'Migut.F01721' => 'egut', 'Migut.J00314' => 'egut', 'MSTRG.20742' => 'ama', 'MSTRG.8134' => 'ama', 'Nitab4.5_0000096g0010' => 'nta', 'Nitab4.5_0000202g0030' => 'nta', 'Nitab4.5_0000216g0370' => 'nta', 'Nitab4.5_0000457g0230' => 'nta', 'Nitab4.5_0001702g0170' => 'nta', 'Nitab4.5_0003607g0010' => 'nta', 'Nitab4.5_0004917g0020' => 'nta', 'Nitab4.5_0007059g0010' => 'nta', 'Nitab4.5_0007184g0010' => 'nta', 'Nitab4.5_0007346g0020' => 'nta', 'Nn1g00410' => 'nnu', 'Nn1g01252' => 'nnu', 'Nn2g11168' => 'nnu', 'Nn2g13403' => 'nnu', 'Nn2g13760' => 'nnu', 'Nn4g26380' => 'nnu', 'Oeu000806.2' => 'oeu', 'Oeu005788.1' => 'oeu', 'Oeu006900.3' => 'oeu', 'Oeu007797.1' => 'oeu', 'Oeu011932.1' => 'oeu', 'Oeu022739.1' => 'oeu', 'Oeu037918.1' => 'oeu', 'Oeu055490.2' => 'oeu', 'Os01g0844400' => 'osa', 'Os02g0819100' => 'osa', 'Os03g0804300' => 'osa', 'Os05g0458000' => 'osa', 'Os07g0467800' => 'osa', 'Os12g0602200' => 'osa', 'Peaxi162Scf00013g03444' => 'pax', 'Peaxi162Scf00094g01120' => 'pax', 'Peaxi162Scf00191g01211' => 'pax', 'Peaxi162Scf00238g01110' => 'pax', 'Peaxi162Scf00330g00719' => 'pax', 'Peaxi162Scf00627g00018' => 'pax', 'PGR031G2686' => 'pgr', 'PGR042G0809' => 'pgr', 'PGR142G0193' => 'pgr', 'PGSC0003DMG400011066' => 'stu', 'PGSC0003DMG400012041' => 'stu', 'PGSC0003DMG400013678' => 'stu', 'PGSC0003DMG400023477' => 'stu', 'PGSC0003DMG400025956' => 'stu', 'PGSC0003DMG401019151' => 'stu', 'Phvul.006G116400' => 'pvu', 'Phvul.007G097300' => 'pvu', 'Phvul.010G015000' => 'pvu', 'Phvul.010G083900' => 'pvu', 'Potri.001G117100' => 'ptr', 'Potri.002G147300' => 'ptr', 'Potri.003G115600' => 'ptr', 'Potri.006G087400' => 'ptr', 'Potri.010G226100' => 'ptr', 'Potri.014G069200' => 'ptr', 'Potri.014G104000' => 'ptr', 'Potri.016G100200' => 'ptr', 'Pp3c10_20450' => 'ppa', 'Pp3c1_42400' => 'ppa', 'Pp3c3_24390' => 'ppa', 'Pp3c3_2860' => 'ppa', 'PRCOL_00003193' => 'pco', 'Prupe.2G144500' => 'ppe', 'Prupe.2G195700' => 'ppe', 'Prupe.2G209800' => 'ppe', 'Prupe.5G080000' => 'ppe', 'Prupe.6G257900' => 'ppe', 'Psat3g001160' => 'psa', 'Psat6g181880' => 'psa', 'Psat7g233720' => 'psa', 'PSO063G7587' => 'pso', 'PSO339G2145' => 'pso', 'PSO339G3369' => 'pso', 'PSO478G2747' => 'pso', 'PSO513G0140' => 'pso', 'PSO782G1614' => 'pso', 'PSO782G4889' => 'pso', 'PSO782G5485' => 'pso', 'PSO801G0241' => 'pso', 'QL07p048854' => 'qlo', 'QL08p046745' => 'qlo', 'QL08p052606' => 'qlo', 'QL08p053414' => 'qlo', 'QL08p054868' => 'qlo', 'RcHm_v2.0_Chr1g0350251' => 'rch', 'RcHm_v2.0_Chr1g0360851' => 'rch', 'RcHm_v2.0_Chr1g0362791' => 'rch', 'RcHm_v2.0_Chr3g0466281' => 'rch', 'RcHm_v2.0_Chr7g0201481' => 'rch', 'Rhsim01G0148600' => 'rsi', 'Rhsim05G0194400' => 'rsi', 'Rhsim07G0000700' => 'rsi', 'Rhsim07G0000800' => 'rsi', 'Rhsim07G0027900' => 'rsi', 'Rhsim09G0149500' => 'rsi', 'RhsimUnG0186900' => 'rsi', 'Sabra01G0089900' => 'sbr', 'Sabra02G0114700' => 'sbr', 'Sabra02G0116300' => 'sbr', 'Sabra03G0080100' => 'sbr', 'Sabra08G0024300' => 'sbr', 'Sabra10G0174300' => 'sbr', 'Sabra14G0048900' => 'sbr', 'Sabra14G0076500' => 'sbr', 'SalBow5G2513' => 'sbo', 'Sc01g0002300' => 'sci', 'Sc01g0004450' => 'sci', 'Sc06g0001680' => 'sci', 'Sc23g0003580' => 'sci', 'Sed0000913' => 'sed', 'Sed0001655' => 'sed', 'Sed0007745' => 'sed', 'Sed0010951' => 'sed', 'Sed0017599' => 'sed', 'Sed0021405' => 'sed', 'Sed0022810' => 'sed', 'SEGI_07099' => 'sgi', 'SEGI_11931' => 'sgi', 'SEGI_13187' => 'sgi', 'SEGI_29958' => 'sgi', 'SEGI_36351' => 'sgi', 'SGA_v2.0_scaffold126G33770' => 'sas', 'SGA_v2.0_scaffold153G37003' => 'sas', 'SGA_v2.0_scaffold2G01359' => 'sas', 'SGA_v2.0_scaffold5G03064' => 'sas', 'SGA_v2.0_scaffold95G28903' => 'sas', 'SHI12701' => 'shi', 'SHI26410' => 'shi', 'SHI38997' => 'shi', 'SHI53759' => 'shi', 'SHI53886' => 'shi', 'SHI54714' => 'shi', 'SMO011G0041' => 'smo', 'SMO146G0251' => 'smo', 'SMO160G0004' => 'smo', 'SMO174G0057' => 'smo', 'SMO244G0089' => 'smo', 'SMO296G0011' => 'smo', 'Solyc01g091280.3' => 'sly', 'Solyc05g047610.3' => 'sly', 'Solyc05g047640.3' => 'sly', 'Solyc05g055630.3' => 'sly', 'Solyc10g018160.2' => 'sly', 'Solyc10g084820.2' => 'sly', 'Solyc10g086565.2' => 'sly', 'Sopen01g037030' => 'spe', 'Sopen05g027920' => 'spe', 'Sopen05g034070' => 'spe', 'Sopen10g007260' => 'spe', 'Sopen10g034260' => 'spe', 'Sopen10g035950' => 'spe', 'Sp3g07710' => 'spa', 'Sp4g27420' => 'spa', 'Sp5g02450' => 'spa', 'Sp6g01280' => 'spa', 'Sp6g38480' => 'spa', 'Sp7g20780' => 'spa', 'TAR374G1413' => 'tar', 'TAR623G1777' => 'tar', 'TAR629G2370' => 'tar', 'TAR633G1759' => 'tar', 'TAR636G3387' => 'tar', 'THA.LOC104802447' => 'tha', 'THA.LOC104813916' => 'tha', 'THA.LOC104816423' => 'tha', 'THA.LOC104817246' => 'tha', 'THA.LOC104825895' => 'tha', 'Thecc.01G335200' => 'tca', 'Thecc.01G377400' => 'tca', 'Thecc.03G262200' => 'tca', 'Thecc.05G036800' => 'tca', 'Thecc.10G080500' => 'tca', 'Thecc.10G080800' => 'tca', 'Thhalv10001560m.g' => 'esa', 'Thhalv10006120m.g' => 'esa', 'Thhalv10014375m.g' => 'esa', 'Thhalv10021264m.g' => 'esa', 'Thhalv10028856m.g' => 'esa', 'TPR.G1914' => 'tpr', 'TPR.G4757' => 'tpr', 'TPR.G5595' => 'tpr', 'TWI14G0952' => 'twi', 'TWI14G1307' => 'twi', 'TWI38G2143' => 'twi', 'TWI59G0826' => 'twi', 'TWI77G0527' => 'twi', 'TWI81G0150' => 'twi', 'unitig_21.g21018' => 'ugi', 'unitig_26.g9725' => 'ugi', 'unitig_744.g24653' => 'ugi', 'unitig_749.g13778' => 'ugi', 'unitig_899.g15035' => 'ugi', 'vmacro04296' => 'vma', 'vmacro04852' => 'vma', 'vmacro13404' => 'vma', 'vmacro20169' => 'vma', 'vmacro21014' => 'vma', 'VMungo0331G0237' => 'vmu', 'VMungo0331G0706' => 'vmu', 'VMungo0331G1361' => 'vmu', 'VMungo0331G1489' => 'vmu', 'VMungo0540G1037' => 'vmu', 'VMungo0720G2487' => 'vmu', 'VMungo0720G2721' => 'vmu', 'Zm00001eb086860' => 'zma', 'Zm00001eb104760' => 'zma', 'Zm00001eb148220' => 'zma', 'Zm00001eb259030' => 'zma', 'Zm00001eb289590' => 'zma', 'Zm00001eb420150' => 'zma' ), 'gf_id' => 'HOM05D000968', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000968' ), 'data_identifier' => 'HOM05D000968', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000968', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p31690' => 'bna', 'A03p36040' => 'bna', 'A03p53730' => 'bna', 'A04p01410' => 'bna', 'A05p05420' => 'bna', 'A05p39630' => 'bna', 'A05p39640' => 'bna', 'A09p00970' => 'bna', 'A09p53060' => 'bna', 'A10p31890' => 'bna', 'Aa31LG10G15040' => 'aar', 'Aa31LG1G21090' => 'aar', 'Aa31LG1G26900' => 'aar', 'Aa31LG3G1820' => 'aar', 'Aa31LG5G1100' => 'aar', 'Aa31LG6G4740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2265' => 'aag', 'Actinidia07998' => 'ach', 'Actinidia11266' => 'ach', 'Actinidia12682' => 'ach', 'Actinidia26479' => 'ach', 'Actinidia31406' => 'ach', 'Actinidia32437' => 'ach', 'Actinidia38862' => 'ach', 'Ah.05g174230' => 'amhyb', 'Ah.05g179070' => 'amhyb', 'Ah.05g179090' => 'amhyb', 'Ah.12g059950' => 'amhyb', 'AL3G20480' => 'aly', 'AL4G44520' => 'aly', 'AL5G43110' => 'aly', 'AL6G13890' => 'aly', 'AL6G52620' => 'aly', 'AL7G30830' => 'aly', 'Aqoxy1G00899' => 'aox', 'Aqoxy5G04333' => 'aox', 'Aqoxy7G00641' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3IZ0NN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4EF6AW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W9P8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79GA3M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C43NQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFCU6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G95YVJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCHK29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LU1UG8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX91RN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGB4B1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8DA0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9H7JI' => 'arhy', 'AT3G09320' => 'ath', 'AT3G60800' => 'ath', 'AT4G00840' => 'ath', 'AT4G22750' => 'ath', 'AT5G04270' => 'ath', 'ATR0090G003' => 'atr', 'ATR0559G349' => 'atr', 'ATR0680G261' => 'atr', 'ATR0810G048' => 'atr', 'Atru.chr12.831' => 'acertr', 'Atru.chr5.303' => 'acertr', 'Atru.chr5.748' => 'acertr', 'Atru.chr8.1999' => 'acertr', 'Atru.chr9.1436' => 'acertr', 'AUR62004211' => 'cqu', 'AUR62004548' => 'cqu', 'AUR62013637' => 'cqu', 'AUR62022662' => 'cqu', 'AUR62025777' => 'cqu', 'AUR62042386' => 'cqu', 'BcaB01g02310' => 'bca', 'BcaB01g06062' => 'bca', 'BcaB02g08975' => 'bca', 'BcaB02g08980' => 'bca', 'BcaC01g04228' => 'bca', 'BcaC01g06830' => 'bca', 'BcaC02g10186' => 'bca', 'BcaC02g12214' => 'bca', 'BcaC04g24101' => 'bca', 'BcaC05g29520' => 'bca', 'BcaC05g29661' => 'bca', 'BcaC06g32130' => 'bca', 'BcaC06g32131' => 'bca', 'BcaC07g40601' => 'bca', 'BcaC07g42641' => 'bca', 'BcaNung01038' => 'bca', 'BcaNung01676' => 'bca', 'BcaNung02480' => 'bca', 'BcaNung07376' => 'bca', 'BolC3t16146H' => 'bol', 'BolC3t16637H' => 'bol', 'BolC4t22257H' => 'bol', 'BolC4t24728H' => 'bol', 'BolC5t34517H' => 'bol', 'BolC7t45703H' => 'bol', 'BolC8t51166H' => 'bol', 'BolC9t53038H' => 'bol', 'BolC9t60000H' => 'bol', 'BraA01t01345Z' => 'bra', 'BraA01t01346Z' => 'bra', 'BraA01t01348Z' => 'bra', 'BraA03t12347Z' => 'bra', 'BraA03t12775Z' => 'bra', 'BraA03t14439Z' => 'bra', 'BraA04t15860Z' => 'bra', 'BraA05t19511Z' => 'bra', 'BraA05t22746Z' => 'bra', 'BraA09t35767Z' => 'bra', 'BraA09t40732Z' => 'bra', 'BraA10t45233Z' => 'bra', 'C03p38720' => 'bna', 'C03p43680' => 'bna', 'C04p06350' => 'bna', 'C04p31800' => 'bna', 'C05p58680' => 'bna', 'C07p52110' => 'bna', 'C08p35760' => 'bna', 'C09p01050' => 'bna', 'C09p72600' => 'bna', 'CAN.G106.2' => 'can', 'CAN.G1482.1' => 'can', 'CAN.G324.12' => 'can', 'CAN.G388.20' => 'can', 'CAN.G412.7' => 'can', 'CAN.G694.32' => 'can', 'CAN.G92.12' => 'can', 'CANSAT11G2353' => 'cansat', 'CANSAT21G1398' => 'cansat', 'CANSAT56G2456' => 'cansat', 'CANSAT56G3031' => 'cansat', 'CANSAT56G4539' => 'cansat', 'CARHR083680' => 'chi', 'CARHR171190' => 'chi', 'CARHR209010' => 'chi', 'CARHR229680' => 'chi', 'CARHR249490' => 'chi', 'Carub.0003s0844' => 'cru', 'Carub.0005s2755' => 'cru', 'Carub.0006s0322' => 'cru', 'Carub.0006s3586' => 'cru', 'Carub.0007s1855' => 'cru', 'Ca_07808_v3' => 'car', 'Ca_09535_v3' => 'car', 'Ca_10548_v3' => 'car', 'Ca_19913_v3' => 'car', 'Ca_19916_v3' => 'car', 'Ca_19975_v3' => 'car', 'CBR_g22876' => 'cbr', 'CBR_g22879' => 'cbr', 'CBR_g38491' => 'cbr', 'CBR_g54185' => 'cbr', 'CBR_g54190' => 'cbr', 'Cc02_g11020' => 'ccan', 'Cc02_g23920' => 'ccan', 'Cc02_g39860' => 'ccan', 'Cc02_g39870' => 'ccan', 'Cc03_g06760' => 'ccan', 'Cc06_g02450' => 'ccan', 'Cc09_g09450' => 'ccan', 'CDE02G1959' => 'cde', 'CDE04G0600' => 'cde', 'CDE07G1996' => 'cde', 'CDE07G2078' => 'cde', 'CDE11G0611' => 'cde', 'Cfa001683' => 'cfa', 'Cfa001734' => 'cfa', 'Cfa001737' => 'cfa', 'Cfa003751' => 'cfa', 'Cfa012019' => 'cfa', 'Cfa017353' => 'cfa', 'Cfa017732' => 'cfa', 'Cfa022464' => 'cfa', 'Ciclev10012400m.g' => 'ccl', 'Ciclev10021242m.g' => 'ccl', 'Ciclev10021302m.g' => 'ccl', 'Ciclev10021463m.g' => 'ccl', 'Ciclev10032359m.g' => 'ccl', 'CiPaw.01G081000' => 'cil', 'CiPaw.01G262500' => 'cil', 'CiPaw.01G269800' => 'cil', 'CiPaw.02G168400' => 'cil', 'CiPaw.05G119500' => 'cil', 'CiPaw.11G147300' => 'cil', 'ClCG01G003630' => 'cla', 'ClCG05G000510' => 'cla', 'ClCG05G002300' => 'cla', 'ClCG08G007650' => 'cla', 'ClCG10G021250' => 'cla', 'COL.COLO4_06218' => 'col', 'COL.COLO4_12538' => 'col', 'COL.COLO4_14775' => 'col', 'COL.COLO4_23875' => 'col', 'Cpa.g.sc141.16' => 'cpa', 'Cpa.g.sc169.16' => 'cpa', 'Cpa.g.sc244.4' => 'cpa', 'Cpa.g.sc244.5' => 'cpa', 'Cpa.g.sc29.87' => 'cpa', 'Cpa.g.sc53.115' => 'cpa', 'Cre03.g207502' => 'cre', 'Cre06.g277000' => 'cre', 'Cre09.g394050' => 'cre', 'CsaV3_3G007680' => 'csa', 'CsaV3_3G009710' => 'csa', 'CsaV3_3G034790' => 'csa', 'CsaV3_5G003750' => 'csa', 'CsaV3_6G036620' => 'csa', 'CSS0002288' => 'camsi', 'CSS0011250' => 'camsi', 'CSS0021619' => 'camsi', 'CSS0046701' => 'camsi', 'DCAR_006420' => 'dca', 'DCAR_006865' => 'dca', 'DCAR_008558' => 'dca', 'DCAR_028754' => 'dca', 'DCAR_028755' => 'dca', 'Dinv31218' => 'din', 'Dinv32371' => 'din', 'Dinv34250' => 'din', 'Dinv37156' => 'din', 'Dinv43704' => 'din', 'Duzib093G1811' => 'dzi', 'Duzib106G1622' => 'dzi', 'Duzib114G0504' => 'dzi', 'Duzib128G0338' => 'dzi', 'Duzib128G1577' => 'dzi', 'Duzib133G0104' => 'dzi', 'Duzib133G1080' => 'dzi', 'Duzib138G0324' => 'dzi', 'Duzib138G0394' => 'dzi', 'Duzib205G0122' => 'dzi', 'Duzib268G1020' => 'dzi', 'Duzib268G1359' => 'dzi', 'ECA232G3929' => 'eca', 'ECA236G2210' => 'eca', 'ECA236G2287' => 'eca', 'ECA240G4568' => 'eca', 'ECA247G0894' => 'eca', 'EL10Ac1g00200' => 'bvu', 'EL10Ac1g00886' => 'bvu', 'EL10As1g23091' => 'bvu', 'EL10As1g23092' => 'bvu', 'Eucgr.A01284' => 'egr', 'Eucgr.A01285' => 'egr', 'Eucgr.D02456' => 'egr', 'Eucgr.E00018' => 'egr', 'Eucgr.E01439' => 'egr', 'Eucgr.G02859' => 'egr', 'FAN01G0168' => 'fan', 'FAN01G0453' => 'fan', 'FAN01G2761' => 'fan', 'FAN02G1239' => 'fan', 'FAN03G0645' => 'fan', 'FAN03G2707' => 'fan', 'FAN03G2978' => 'fan', 'FAN04G0227' => 'fan', 'FAN06G0091' => 'fan', 'FAN06G1418' => 'fan', 'FAN06G1512' => 'fan', 'FAN06G1986' => 'fan', 'FAN06G2905' => 'fan', 'FAN06G4325' => 'fan', 'FAN08G0033' => 'fan', 'FAN09G0642' => 'fan', 'FAN10G1763' => 'fan', 'FAN10G2026' => 'fan', 'FAN10G2513' => 'fan', 'FAN10G3402' => 'fan', 'FAN10G3564' => 'fan', 'FAN10G3987' => 'fan', 'FAN13G1490' => 'fan', 'FAN14G5857' => 'fan', 'FAN18G1188' => 'fan', 'FvH4_5g00750' => 'fve', 'FvH4_6g13410' => 'fve', 'FvH4_7g11740' => 'fve', 'FvH4_7g17410' => 'fve', 'FvH4_7g18860' => 'fve', 'Glyma.01G099100' => 'gma', 'Glyma.01G142300' => 'gma', 'Glyma.03G025500' => 'gma', 'Glyma.03G069700' => 'gma', 'Glyma.03G260000' => 'gma', 'Glyma.09G269800' => 'gma', 'Glyma.10G208700' => 'gma', 'Glyma.18G220400' => 'gma', 'Glyma.20G182000' => 'gma', 'Gohir.A01G221726' => 'ghi', 'Gohir.A07G134600' => 'ghi', 'Gohir.A07G146000' => 'ghi', 'Gohir.A08G173900' => 'ghi', 'Gohir.A09G194900' => 'ghi', 'Gohir.A10G204100' => 'ghi', 'Gohir.A11G080600' => 'ghi', 'Gohir.A11G327500' => 'ghi', 'Gohir.A12G101800' => 'ghi', 'Gohir.D01G211200' => 'ghi', 'Gohir.D07G139200' => 'ghi', 'Gohir.D07G152100' => 'ghi', 'Gohir.D08G192600' => 'ghi', 'Gohir.D09G189200' => 'ghi', 'Gohir.D10G212000' => 'ghi', 'Gohir.D11G085200' => 'ghi', 'Gohir.D11G346400' => 'ghi', 'Gohir.D12G104800' => 'ghi', 'Gorai.001G151300' => 'gra', 'Gorai.001G174100' => 'gra', 'Gorai.002G257000' => 'gra', 'Gorai.004G202600' => 'gra', 'Gorai.007G090900' => 'gra', 'Gorai.007G376700' => 'gra', 'Gorai.008G114100' => 'gra', 'Gorai.011G237900' => 'gra', 'GSVIVG01005450001' => 'vvi', 'GSVIVG01016232001' => 'vvi', 'GSVIVG01026157001' => 'vvi', 'GSVIVG01027419001' => 'vvi', 'GSVIVG01027631001' => 'vvi', 'GSVIVG01034143001' => 'vvi', 'HanXRQChr03g0093921' => 'han', 'HanXRQChr04g0120001' => 'han', 'HanXRQChr04g0122561' => 'han', 'HanXRQChr09g0246851' => 'han', 'HanXRQChr10g0293311' => 'han', 'HanXRQChr13g0425231' => 'han', 'HanXRQChr16g0532571' => 'han', 'Haze_09050' => 'cav', 'Haze_15715' => 'cav', 'Haze_15716' => 'cav', 'Haze_16803' => 'cav', 'Haze_16850' => 'cav', 'Hma1.2p1_0301F.1_g118655' => 'hma', 'Hma1.2p1_0309F.1_g120590' => 'hma', 'Hma1.2p1_0936F.1_g238900' => 'hma', 'Hma1.2p1_3552F.1_g336740' => 'hma', 'HPP92_003520' => 'vpl', 'HPP92_006628' => 'vpl', 'HPP92_006645' => 'vpl', 'HPP92_014669' => 'vpl', 'HPP92_015077' => 'vpl', 'Hund16742' => 'sun', 'Hund17022' => 'sun', 'Lalb_Chr02g0152131' => 'lal', 'Lalb_Chr05g0225371' => 'lal', 'Lalb_Chr07g0189841' => 'lal', 'Lalb_Chr07g0192961' => 'lal', 'Lalb_Chr12g0208221' => 'lal', 'Lalb_Chr13g0291211' => 'lal', 'Lalb_Chr13g0291781' => 'lal', 'Lalb_Chr18g0044651' => 'lal', 'Lalb_Chr21g0313731' => 'lal', 'Lj1g0022533' => 'lja', 'Lj2A18T50' => 'lonja', 'Lj2A92G93' => 'lonja', 'Lj3A965T73' => 'lonja', 'Lj3g0000673' => 'lja', 'Lj3g0002666' => 'lja', 'Lj4g0016985' => 'lja', 'Lj5g0003625' => 'lja', 'Lj7A529G36' => 'lonja', 'Lj9A569T49' => 'lonja', 'Lj9A604T63' => 'lonja', 'Lsat_1_v5_gn_3_132060' => 'lsa', 'Lsat_1_v5_gn_4_68941' => 'lsa', 'Lsat_1_v5_gn_5_95580' => 'lsa', 'Lsat_1_v5_gn_7_161' => 'lsa', 'Lsat_1_v5_gn_7_7041' => 'lsa', 'Lsat_1_v5_gn_9_33481' => 'lsa', 'Lsat_1_v5_gn_9_68260' => 'lsa', 'Manes.01G073100' => 'mes', 'Manes.01G266300' => 'mes', 'Manes.02G033300' => 'mes', 'Manes.05G017900' => 'mes', 'Manes.05G046100' => 'mes', 'Manes.08G080900' => 'mes', 'Manes.10G049400' => 'mes', 'Mapoly0009s0186' => 'mpo', 'Mapoly0036s0118' => 'mpo', 'Mapoly0101s0046' => 'mpo', 'MBI04_g30218_MAGBIO' => 'mbi', 'MBI04_g35564_MAGBIO' => 'mbi', 'MBI12_g34011_MAGBIO' => 'mbi', 'MBI14_g04655_MAGBIO' => 'mbi', 'MCO07G653' => 'mco', 'MCO10G173' => 'mco', 'MD01G1087100' => 'mdo', 'MD01G1104200' => 'mdo', 'MD02G1205100' => 'mdo', 'MD04G1079200' => 'mdo', 'MD04G1131400' => 'mdo', 'MD07G1121600' => 'mdo', 'MD07G1157300' => 'mdo', 'MD07G1171000' => 'mdo', 'MD12G1144500' => 'mdo', 'Medtr1g094610' => 'mtr', 'Medtr4g021795' => 'mtr', 'Medtr4g023760' => 'mtr', 'Medtr7g118050' => 'mtr', 'MELO3C005582.2' => 'cme', 'MELO3C005989.2' => 'cme', 'MELO3C006192.2' => 'cme', 'MELO3C009248.2' => 'cme', 'MELO3C019817.2' => 'cme', 'Migut.B01625' => 'egut', 'Migut.B01915' => 'egut', 'Migut.F01721' => 'egut', 'Migut.J00314' => 'egut', 'MSTRG.20742' => 'ama', 'MSTRG.8134' => 'ama', 'Nitab4.5_0000096g0010' => 'nta', 'Nitab4.5_0000202g0030' => 'nta', 'Nitab4.5_0000216g0370' => 'nta', 'Nitab4.5_0000457g0230' => 'nta', 'Nitab4.5_0001702g0170' => 'nta', 'Nitab4.5_0003607g0010' => 'nta', 'Nitab4.5_0004917g0020' => 'nta', 'Nitab4.5_0007059g0010' => 'nta', 'Nitab4.5_0007184g0010' => 'nta', 'Nitab4.5_0007346g0020' => 'nta', 'Nn1g00410' => 'nnu', 'Nn1g01252' => 'nnu', 'Nn2g11168' => 'nnu', 'Nn2g13403' => 'nnu', 'Nn2g13760' => 'nnu', 'Nn4g26380' => 'nnu', 'Oeu000806.2' => 'oeu', 'Oeu005788.1' => 'oeu', 'Oeu006900.3' => 'oeu', 'Oeu007797.1' => 'oeu', 'Oeu011932.1' => 'oeu', 'Oeu022739.1' => 'oeu', 'Oeu037918.1' => 'oeu', 'Oeu055490.2' => 'oeu', 'Os01g0844400' => 'osa', 'Os02g0819100' => 'osa', 'Os03g0804300' => 'osa', 'Os05g0458000' => 'osa', 'Os07g0467800' => 'osa', 'Os12g0602200' => 'osa', 'Peaxi162Scf00013g03444' => 'pax', 'Peaxi162Scf00094g01120' => 'pax', 'Peaxi162Scf00191g01211' => 'pax', 'Peaxi162Scf00238g01110' => 'pax', 'Peaxi162Scf00330g00719' => 'pax', 'Peaxi162Scf00627g00018' => 'pax', 'PGR031G2686' => 'pgr', 'PGR042G0809' => 'pgr', 'PGR142G0193' => 'pgr', 'PGSC0003DMG400011066' => 'stu', 'PGSC0003DMG400012041' => 'stu', 'PGSC0003DMG400013678' => 'stu', 'PGSC0003DMG400023477' => 'stu', 'PGSC0003DMG400025956' => 'stu', 'PGSC0003DMG401019151' => 'stu', 'Phvul.006G116400' => 'pvu', 'Phvul.007G097300' => 'pvu', 'Phvul.010G015000' => 'pvu', 'Phvul.010G083900' => 'pvu', 'Potri.001G117100' => 'ptr', 'Potri.002G147300' => 'ptr', 'Potri.003G115600' => 'ptr', 'Potri.006G087400' => 'ptr', 'Potri.010G226100' => 'ptr', 'Potri.014G069200' => 'ptr', 'Potri.014G104000' => 'ptr', 'Potri.016G100200' => 'ptr', 'Pp3c10_20450' => 'ppa', 'Pp3c1_42400' => 'ppa', 'Pp3c3_24390' => 'ppa', 'Pp3c3_2860' => 'ppa', 'PRCOL_00003193' => 'pco', 'Prupe.2G144500' => 'ppe', 'Prupe.2G195700' => 'ppe', 'Prupe.2G209800' => 'ppe', 'Prupe.5G080000' => 'ppe', 'Prupe.6G257900' => 'ppe', 'Psat3g001160' => 'psa', 'Psat6g181880' => 'psa', 'Psat7g233720' => 'psa', 'PSO063G7587' => 'pso', 'PSO339G2145' => 'pso', 'PSO339G3369' => 'pso', 'PSO478G2747' => 'pso', 'PSO513G0140' => 'pso', 'PSO782G1614' => 'pso', 'PSO782G4889' => 'pso', 'PSO782G5485' => 'pso', 'PSO801G0241' => 'pso', 'QL07p048854' => 'qlo', 'QL08p046745' => 'qlo', 'QL08p052606' => 'qlo', 'QL08p053414' => 'qlo', 'QL08p054868' => 'qlo', 'RcHm_v2.0_Chr1g0350251' => 'rch', 'RcHm_v2.0_Chr1g0360851' => 'rch', 'RcHm_v2.0_Chr1g0362791' => 'rch', 'RcHm_v2.0_Chr3g0466281' => 'rch', 'RcHm_v2.0_Chr7g0201481' => 'rch', 'Rhsim01G0148600' => 'rsi', 'Rhsim05G0194400' => 'rsi', 'Rhsim07G0000700' => 'rsi', 'Rhsim07G0000800' => 'rsi', 'Rhsim07G0027900' => 'rsi', 'Rhsim09G0149500' => 'rsi', 'RhsimUnG0186900' => 'rsi', 'Sabra01G0089900' => 'sbr', 'Sabra02G0114700' => 'sbr', 'Sabra02G0116300' => 'sbr', 'Sabra03G0080100' => 'sbr', 'Sabra08G0024300' => 'sbr', 'Sabra10G0174300' => 'sbr', 'Sabra14G0048900' => 'sbr', 'Sabra14G0076500' => 'sbr', 'SalBow5G2513' => 'sbo', 'Sc01g0002300' => 'sci', 'Sc01g0004450' => 'sci', 'Sc06g0001680' => 'sci', 'Sc23g0003580' => 'sci', 'Sed0000913' => 'sed', 'Sed0001655' => 'sed', 'Sed0007745' => 'sed', 'Sed0010951' => 'sed', 'Sed0017599' => 'sed', 'Sed0021405' => 'sed', 'Sed0022810' => 'sed', 'SEGI_07099' => 'sgi', 'SEGI_11931' => 'sgi', 'SEGI_13187' => 'sgi', 'SEGI_29958' => 'sgi', 'SEGI_36351' => 'sgi', 'SGA_v2.0_scaffold126G33770' => 'sas', 'SGA_v2.0_scaffold153G37003' => 'sas', 'SGA_v2.0_scaffold2G01359' => 'sas', 'SGA_v2.0_scaffold5G03064' => 'sas', 'SGA_v2.0_scaffold95G28903' => 'sas', 'SHI12701' => 'shi', 'SHI26410' => 'shi', 'SHI38997' => 'shi', 'SHI53759' => 'shi', 'SHI53886' => 'shi', 'SHI54714' => 'shi', 'SMO011G0041' => 'smo', 'SMO146G0251' => 'smo', 'SMO160G0004' => 'smo', 'SMO174G0057' => 'smo', 'SMO244G0089' => 'smo', 'SMO296G0011' => 'smo', 'Solyc01g091280.3' => 'sly', 'Solyc05g047610.3' => 'sly', 'Solyc05g047640.3' => 'sly', 'Solyc05g055630.3' => 'sly', 'Solyc10g018160.2' => 'sly', 'Solyc10g084820.2' => 'sly', 'Solyc10g086565.2' => 'sly', 'Sopen01g037030' => 'spe', 'Sopen05g027920' => 'spe', 'Sopen05g034070' => 'spe', 'Sopen10g007260' => 'spe', 'Sopen10g034260' => 'spe', 'Sopen10g035950' => 'spe', 'Sp3g07710' => 'spa', 'Sp4g27420' => 'spa', 'Sp5g02450' => 'spa', 'Sp6g01280' => 'spa', 'Sp6g38480' => 'spa', 'Sp7g20780' => 'spa', 'TAR374G1413' => 'tar', 'TAR623G1777' => 'tar', 'TAR629G2370' => 'tar', 'TAR633G1759' => 'tar', 'TAR636G3387' => 'tar', 'THA.LOC104802447' => 'tha', 'THA.LOC104813916' => 'tha', 'THA.LOC104816423' => 'tha', 'THA.LOC104817246' => 'tha', 'THA.LOC104825895' => 'tha', 'Thecc.01G335200' => 'tca', 'Thecc.01G377400' => 'tca', 'Thecc.03G262200' => 'tca', 'Thecc.05G036800' => 'tca', 'Thecc.10G080500' => 'tca', 'Thecc.10G080800' => 'tca', 'Thhalv10001560m.g' => 'esa', 'Thhalv10006120m.g' => 'esa', 'Thhalv10014375m.g' => 'esa', 'Thhalv10021264m.g' => 'esa', 'Thhalv10028856m.g' => 'esa', 'TPR.G1914' => 'tpr', 'TPR.G4757' => 'tpr', 'TPR.G5595' => 'tpr', 'TWI14G0952' => 'twi', 'TWI14G1307' => 'twi', 'TWI38G2143' => 'twi', 'TWI59G0826' => 'twi', 'TWI77G0527' => 'twi', 'TWI81G0150' => 'twi', 'unitig_21.g21018' => 'ugi', 'unitig_26.g9725' => 'ugi', 'unitig_744.g24653' => 'ugi', 'unitig_749.g13778' => 'ugi', 'unitig_899.g15035' => 'ugi', 'vmacro04296' => 'vma', 'vmacro04852' => 'vma', 'vmacro13404' => 'vma', 'vmacro20169' => 'vma', 'vmacro21014' => 'vma', 'VMungo0331G0237' => 'vmu', 'VMungo0331G0706' => 'vmu', 'VMungo0331G1361' => 'vmu', 'VMungo0331G1489' => 'vmu', 'VMungo0540G1037' => 'vmu', 'VMungo0720G2487' => 'vmu', 'VMungo0720G2721' => 'vmu', 'Zm00001eb086860' => 'zma', 'Zm00001eb104760' => 'zma', 'Zm00001eb148220' => 'zma', 'Zm00001eb259030' => 'zma', 'Zm00001eb289590' => 'zma', 'Zm00001eb420150' => 'zma' ) $gf_id = 'HOM05D000968' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000968' ) $data_identifier = 'HOM05D000968' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 19, 'bol' => (int) 9, 'bra' => (int) 12, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 5, 'ccan' => (int) 7, 'cde' => (int) 5, 'cfa' => (int) 8, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 4, 'dca' => (int) 5, 'din' => (int) 5, 'dzi' => (int) 12, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 25, 'fve' => (int) 5, 'gma' => (int) 9, 'ghi' => (int) 18, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 7, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 5, 'sun' => (int) 2, 'lal' => (int) 9, 'lja' => (int) 5, 'lonja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 9, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 2, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 3, 'stu' => (int) 6, 'pvu' => (int) 4, 'ptr' => (int) 8, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 3, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 1, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 5, 'sas' => (int) 5, 'shi' => (int) 6, 'smo' => (int) 6, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 3, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420150' $species_info = array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ) $local_species = 'cde' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000968', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p31690' => 'bna', 'A03p36040' => 'bna', 'A03p53730' => 'bna', 'A04p01410' => 'bna', 'A05p05420' => 'bna', 'A05p39630' => 'bna', 'A05p39640' => 'bna', 'A09p00970' => 'bna', 'A09p53060' => 'bna', 'A10p31890' => 'bna', 'Aa31LG10G15040' => 'aar', 'Aa31LG1G21090' => 'aar', 'Aa31LG1G26900' => 'aar', 'Aa31LG3G1820' => 'aar', 'Aa31LG5G1100' => 'aar', 'Aa31LG6G4740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2265' => 'aag', 'Actinidia07998' => 'ach', 'Actinidia11266' => 'ach', 'Actinidia12682' => 'ach', 'Actinidia26479' => 'ach', 'Actinidia31406' => 'ach', 'Actinidia32437' => 'ach', 'Actinidia38862' => 'ach', 'Ah.05g174230' => 'amhyb', 'Ah.05g179070' => 'amhyb', 'Ah.05g179090' => 'amhyb', 'Ah.12g059950' => 'amhyb', 'AL3G20480' => 'aly', 'AL4G44520' => 'aly', 'AL5G43110' => 'aly', 'AL6G13890' => 'aly', 'AL6G52620' => 'aly', 'AL7G30830' => 'aly', 'Aqoxy1G00899' => 'aox', 'Aqoxy5G04333' => 'aox', 'Aqoxy7G00641' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3IZ0NN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4EF6AW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W9P8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79GA3M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C43NQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFCU6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G95YVJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCHK29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LU1UG8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX91RN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGB4B1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8DA0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9H7JI' => 'arhy', 'AT3G09320' => 'ath', 'AT3G60800' => 'ath', 'AT4G00840' => 'ath', 'AT4G22750' => 'ath', 'AT5G04270' => 'ath', 'ATR0090G003' => 'atr', 'ATR0559G349' => 'atr', 'ATR0680G261' => 'atr', 'ATR0810G048' => 'atr', 'Atru.chr12.831' => 'acertr', 'Atru.chr5.303' => 'acertr', 'Atru.chr5.748' => 'acertr', 'Atru.chr8.1999' => 'acertr', 'Atru.chr9.1436' => 'acertr', 'AUR62004211' => 'cqu', 'AUR62004548' => 'cqu', 'AUR62013637' => 'cqu', 'AUR62022662' => 'cqu', 'AUR62025777' => 'cqu', 'AUR62042386' => 'cqu', 'BcaB01g02310' => 'bca', 'BcaB01g06062' => 'bca', 'BcaB02g08975' => 'bca', 'BcaB02g08980' => 'bca', 'BcaC01g04228' => 'bca', 'BcaC01g06830' => 'bca', 'BcaC02g10186' => 'bca', 'BcaC02g12214' => 'bca', 'BcaC04g24101' => 'bca', 'BcaC05g29520' => 'bca', 'BcaC05g29661' => 'bca', 'BcaC06g32130' => 'bca', 'BcaC06g32131' => 'bca', 'BcaC07g40601' => 'bca', 'BcaC07g42641' => 'bca', 'BcaNung01038' => 'bca', 'BcaNung01676' => 'bca', 'BcaNung02480' => 'bca', 'BcaNung07376' => 'bca', 'BolC3t16146H' => 'bol', 'BolC3t16637H' => 'bol', 'BolC4t22257H' => 'bol', 'BolC4t24728H' => 'bol', 'BolC5t34517H' => 'bol', 'BolC7t45703H' => 'bol', 'BolC8t51166H' => 'bol', 'BolC9t53038H' => 'bol', 'BolC9t60000H' => 'bol', 'BraA01t01345Z' => 'bra', 'BraA01t01346Z' => 'bra', 'BraA01t01348Z' => 'bra', 'BraA03t12347Z' => 'bra', 'BraA03t12775Z' => 'bra', 'BraA03t14439Z' => 'bra', 'BraA04t15860Z' => 'bra', 'BraA05t19511Z' => 'bra', 'BraA05t22746Z' => 'bra', 'BraA09t35767Z' => 'bra', 'BraA09t40732Z' => 'bra', 'BraA10t45233Z' => 'bra', 'C03p38720' => 'bna', 'C03p43680' => 'bna', 'C04p06350' => 'bna', 'C04p31800' => 'bna', 'C05p58680' => 'bna', 'C07p52110' => 'bna', 'C08p35760' => 'bna', 'C09p01050' => 'bna', 'C09p72600' => 'bna', 'CAN.G106.2' => 'can', 'CAN.G1482.1' => 'can', 'CAN.G324.12' => 'can', 'CAN.G388.20' => 'can', 'CAN.G412.7' => 'can', 'CAN.G694.32' => 'can', 'CAN.G92.12' => 'can', 'CANSAT11G2353' => 'cansat', 'CANSAT21G1398' => 'cansat', 'CANSAT56G2456' => 'cansat', 'CANSAT56G3031' => 'cansat', 'CANSAT56G4539' => 'cansat', 'CARHR083680' => 'chi', 'CARHR171190' => 'chi', 'CARHR209010' => 'chi', 'CARHR229680' => 'chi', 'CARHR249490' => 'chi', 'Carub.0003s0844' => 'cru', 'Carub.0005s2755' => 'cru', 'Carub.0006s0322' => 'cru', 'Carub.0006s3586' => 'cru', 'Carub.0007s1855' => 'cru', 'Ca_07808_v3' => 'car', 'Ca_09535_v3' => 'car', 'Ca_10548_v3' => 'car', 'Ca_19913_v3' => 'car', 'Ca_19916_v3' => 'car', 'Ca_19975_v3' => 'car', 'CBR_g22876' => 'cbr', 'CBR_g22879' => 'cbr', 'CBR_g38491' => 'cbr', 'CBR_g54185' => 'cbr', 'CBR_g54190' => 'cbr', 'Cc02_g11020' => 'ccan', 'Cc02_g23920' => 'ccan', 'Cc02_g39860' => 'ccan', 'Cc02_g39870' => 'ccan', 'Cc03_g06760' => 'ccan', 'Cc06_g02450' => 'ccan', 'Cc09_g09450' => 'ccan', 'CDE02G1959' => 'cde', 'CDE04G0600' => 'cde', 'CDE07G1996' => 'cde', 'CDE07G2078' => 'cde', 'CDE11G0611' => 'cde', 'Cfa001683' => 'cfa', 'Cfa001734' => 'cfa', 'Cfa001737' => 'cfa', 'Cfa003751' => 'cfa', 'Cfa012019' => 'cfa', 'Cfa017353' => 'cfa', 'Cfa017732' => 'cfa', 'Cfa022464' => 'cfa', 'Ciclev10012400m.g' => 'ccl', 'Ciclev10021242m.g' => 'ccl', 'Ciclev10021302m.g' => 'ccl', 'Ciclev10021463m.g' => 'ccl', 'Ciclev10032359m.g' => 'ccl', 'CiPaw.01G081000' => 'cil', 'CiPaw.01G262500' => 'cil', 'CiPaw.01G269800' => 'cil', 'CiPaw.02G168400' => 'cil', 'CiPaw.05G119500' => 'cil', 'CiPaw.11G147300' => 'cil', 'ClCG01G003630' => 'cla', 'ClCG05G000510' => 'cla', 'ClCG05G002300' => 'cla', 'ClCG08G007650' => 'cla', 'ClCG10G021250' => 'cla', 'COL.COLO4_06218' => 'col', 'COL.COLO4_12538' => 'col', 'COL.COLO4_14775' => 'col', 'COL.COLO4_23875' => 'col', 'Cpa.g.sc141.16' => 'cpa', 'Cpa.g.sc169.16' => 'cpa', 'Cpa.g.sc244.4' => 'cpa', 'Cpa.g.sc244.5' => 'cpa', 'Cpa.g.sc29.87' => 'cpa', 'Cpa.g.sc53.115' => 'cpa', 'Cre03.g207502' => 'cre', 'Cre06.g277000' => 'cre', 'Cre09.g394050' => 'cre', 'CsaV3_3G007680' => 'csa', 'CsaV3_3G009710' => 'csa', 'CsaV3_3G034790' => 'csa', 'CsaV3_5G003750' => 'csa', 'CsaV3_6G036620' => 'csa', 'CSS0002288' => 'camsi', 'CSS0011250' => 'camsi', 'CSS0021619' => 'camsi', 'CSS0046701' => 'camsi', 'DCAR_006420' => 'dca', 'DCAR_006865' => 'dca', 'DCAR_008558' => 'dca', 'DCAR_028754' => 'dca', 'DCAR_028755' => 'dca', 'Dinv31218' => 'din', 'Dinv32371' => 'din', 'Dinv34250' => 'din', 'Dinv37156' => 'din', 'Dinv43704' => 'din', 'Duzib093G1811' => 'dzi', 'Duzib106G1622' => 'dzi', 'Duzib114G0504' => 'dzi', 'Duzib128G0338' => 'dzi', 'Duzib128G1577' => 'dzi', 'Duzib133G0104' => 'dzi', 'Duzib133G1080' => 'dzi', 'Duzib138G0324' => 'dzi', 'Duzib138G0394' => 'dzi', 'Duzib205G0122' => 'dzi', 'Duzib268G1020' => 'dzi', 'Duzib268G1359' => 'dzi', 'ECA232G3929' => 'eca', 'ECA236G2210' => 'eca', 'ECA236G2287' => 'eca', 'ECA240G4568' => 'eca', 'ECA247G0894' => 'eca', 'EL10Ac1g00200' => 'bvu', 'EL10Ac1g00886' => 'bvu', 'EL10As1g23091' => 'bvu', 'EL10As1g23092' => 'bvu', 'Eucgr.A01284' => 'egr', 'Eucgr.A01285' => 'egr', 'Eucgr.D02456' => 'egr', 'Eucgr.E00018' => 'egr', 'Eucgr.E01439' => 'egr', 'Eucgr.G02859' => 'egr', 'FAN01G0168' => 'fan', 'FAN01G0453' => 'fan', 'FAN01G2761' => 'fan', 'FAN02G1239' => 'fan', 'FAN03G0645' => 'fan', 'FAN03G2707' => 'fan', 'FAN03G2978' => 'fan', 'FAN04G0227' => 'fan', 'FAN06G0091' => 'fan', 'FAN06G1418' => 'fan', 'FAN06G1512' => 'fan', 'FAN06G1986' => 'fan', 'FAN06G2905' => 'fan', 'FAN06G4325' => 'fan', 'FAN08G0033' => 'fan', 'FAN09G0642' => 'fan', 'FAN10G1763' => 'fan', 'FAN10G2026' => 'fan', 'FAN10G2513' => 'fan', 'FAN10G3402' => 'fan', 'FAN10G3564' => 'fan', 'FAN10G3987' => 'fan', 'FAN13G1490' => 'fan', 'FAN14G5857' => 'fan', 'FAN18G1188' => 'fan', 'FvH4_5g00750' => 'fve', 'FvH4_6g13410' => 'fve', 'FvH4_7g11740' => 'fve', 'FvH4_7g17410' => 'fve', 'FvH4_7g18860' => 'fve', 'Glyma.01G099100' => 'gma', 'Glyma.01G142300' => 'gma', 'Glyma.03G025500' => 'gma', 'Glyma.03G069700' => 'gma', 'Glyma.03G260000' => 'gma', 'Glyma.09G269800' => 'gma', 'Glyma.10G208700' => 'gma', 'Glyma.18G220400' => 'gma', 'Glyma.20G182000' => 'gma', 'Gohir.A01G221726' => 'ghi', 'Gohir.A07G134600' => 'ghi', 'Gohir.A07G146000' => 'ghi', 'Gohir.A08G173900' => 'ghi', 'Gohir.A09G194900' => 'ghi', 'Gohir.A10G204100' => 'ghi', 'Gohir.A11G080600' => 'ghi', 'Gohir.A11G327500' => 'ghi', 'Gohir.A12G101800' => 'ghi', 'Gohir.D01G211200' => 'ghi', 'Gohir.D07G139200' => 'ghi', 'Gohir.D07G152100' => 'ghi', 'Gohir.D08G192600' => 'ghi', 'Gohir.D09G189200' => 'ghi', 'Gohir.D10G212000' => 'ghi', 'Gohir.D11G085200' => 'ghi', 'Gohir.D11G346400' => 'ghi', 'Gohir.D12G104800' => 'ghi', 'Gorai.001G151300' => 'gra', 'Gorai.001G174100' => 'gra', 'Gorai.002G257000' => 'gra', 'Gorai.004G202600' => 'gra', 'Gorai.007G090900' => 'gra', 'Gorai.007G376700' => 'gra', 'Gorai.008G114100' => 'gra', 'Gorai.011G237900' => 'gra', 'GSVIVG01005450001' => 'vvi', 'GSVIVG01016232001' => 'vvi', 'GSVIVG01026157001' => 'vvi', 'GSVIVG01027419001' => 'vvi', 'GSVIVG01027631001' => 'vvi', 'GSVIVG01034143001' => 'vvi', 'HanXRQChr03g0093921' => 'han', 'HanXRQChr04g0120001' => 'han', 'HanXRQChr04g0122561' => 'han', 'HanXRQChr09g0246851' => 'han', 'HanXRQChr10g0293311' => 'han', 'HanXRQChr13g0425231' => 'han', 'HanXRQChr16g0532571' => 'han', 'Haze_09050' => 'cav', 'Haze_15715' => 'cav', 'Haze_15716' => 'cav', 'Haze_16803' => 'cav', 'Haze_16850' => 'cav', 'Hma1.2p1_0301F.1_g118655' => 'hma', 'Hma1.2p1_0309F.1_g120590' => 'hma', 'Hma1.2p1_0936F.1_g238900' => 'hma', 'Hma1.2p1_3552F.1_g336740' => 'hma', 'HPP92_003520' => 'vpl', 'HPP92_006628' => 'vpl', 'HPP92_006645' => 'vpl', 'HPP92_014669' => 'vpl', 'HPP92_015077' => 'vpl', 'Hund16742' => 'sun', 'Hund17022' => 'sun', 'Lalb_Chr02g0152131' => 'lal', 'Lalb_Chr05g0225371' => 'lal', 'Lalb_Chr07g0189841' => 'lal', 'Lalb_Chr07g0192961' => 'lal', 'Lalb_Chr12g0208221' => 'lal', 'Lalb_Chr13g0291211' => 'lal', 'Lalb_Chr13g0291781' => 'lal', 'Lalb_Chr18g0044651' => 'lal', 'Lalb_Chr21g0313731' => 'lal', 'Lj1g0022533' => 'lja', 'Lj2A18T50' => 'lonja', 'Lj2A92G93' => 'lonja', 'Lj3A965T73' => 'lonja', 'Lj3g0000673' => 'lja', 'Lj3g0002666' => 'lja', 'Lj4g0016985' => 'lja', 'Lj5g0003625' => 'lja', 'Lj7A529G36' => 'lonja', 'Lj9A569T49' => 'lonja', 'Lj9A604T63' => 'lonja', 'Lsat_1_v5_gn_3_132060' => 'lsa', 'Lsat_1_v5_gn_4_68941' => 'lsa', 'Lsat_1_v5_gn_5_95580' => 'lsa', 'Lsat_1_v5_gn_7_161' => 'lsa', 'Lsat_1_v5_gn_7_7041' => 'lsa', 'Lsat_1_v5_gn_9_33481' => 'lsa', 'Lsat_1_v5_gn_9_68260' => 'lsa', 'Manes.01G073100' => 'mes', 'Manes.01G266300' => 'mes', 'Manes.02G033300' => 'mes', 'Manes.05G017900' => 'mes', 'Manes.05G046100' => 'mes', 'Manes.08G080900' => 'mes', 'Manes.10G049400' => 'mes', 'Mapoly0009s0186' => 'mpo', 'Mapoly0036s0118' => 'mpo', 'Mapoly0101s0046' => 'mpo', 'MBI04_g30218_MAGBIO' => 'mbi', 'MBI04_g35564_MAGBIO' => 'mbi', 'MBI12_g34011_MAGBIO' => 'mbi', 'MBI14_g04655_MAGBIO' => 'mbi', 'MCO07G653' => 'mco', 'MCO10G173' => 'mco', 'MD01G1087100' => 'mdo', 'MD01G1104200' => 'mdo', 'MD02G1205100' => 'mdo', 'MD04G1079200' => 'mdo', 'MD04G1131400' => 'mdo', 'MD07G1121600' => 'mdo', 'MD07G1157300' => 'mdo', 'MD07G1171000' => 'mdo', 'MD12G1144500' => 'mdo', 'Medtr1g094610' => 'mtr', 'Medtr4g021795' => 'mtr', 'Medtr4g023760' => 'mtr', 'Medtr7g118050' => 'mtr', 'MELO3C005582.2' => 'cme', 'MELO3C005989.2' => 'cme', 'MELO3C006192.2' => 'cme', 'MELO3C009248.2' => 'cme', 'MELO3C019817.2' => 'cme', 'Migut.B01625' => 'egut', 'Migut.B01915' => 'egut', 'Migut.F01721' => 'egut', 'Migut.J00314' => 'egut', 'MSTRG.20742' => 'ama', 'MSTRG.8134' => 'ama', 'Nitab4.5_0000096g0010' => 'nta', 'Nitab4.5_0000202g0030' => 'nta', 'Nitab4.5_0000216g0370' => 'nta', 'Nitab4.5_0000457g0230' => 'nta', 'Nitab4.5_0001702g0170' => 'nta', 'Nitab4.5_0003607g0010' => 'nta', 'Nitab4.5_0004917g0020' => 'nta', 'Nitab4.5_0007059g0010' => 'nta', 'Nitab4.5_0007184g0010' => 'nta', 'Nitab4.5_0007346g0020' => 'nta', 'Nn1g00410' => 'nnu', 'Nn1g01252' => 'nnu', 'Nn2g11168' => 'nnu', 'Nn2g13403' => 'nnu', 'Nn2g13760' => 'nnu', 'Nn4g26380' => 'nnu', 'Oeu000806.2' => 'oeu', 'Oeu005788.1' => 'oeu', 'Oeu006900.3' => 'oeu', 'Oeu007797.1' => 'oeu', 'Oeu011932.1' => 'oeu', 'Oeu022739.1' => 'oeu', 'Oeu037918.1' => 'oeu', 'Oeu055490.2' => 'oeu', 'Os01g0844400' => 'osa', 'Os02g0819100' => 'osa', 'Os03g0804300' => 'osa', 'Os05g0458000' => 'osa', 'Os07g0467800' => 'osa', 'Os12g0602200' => 'osa', 'Peaxi162Scf00013g03444' => 'pax', 'Peaxi162Scf00094g01120' => 'pax', 'Peaxi162Scf00191g01211' => 'pax', 'Peaxi162Scf00238g01110' => 'pax', 'Peaxi162Scf00330g00719' => 'pax', 'Peaxi162Scf00627g00018' => 'pax', 'PGR031G2686' => 'pgr', 'PGR042G0809' => 'pgr', 'PGR142G0193' => 'pgr', 'PGSC0003DMG400011066' => 'stu', 'PGSC0003DMG400012041' => 'stu', 'PGSC0003DMG400013678' => 'stu', 'PGSC0003DMG400023477' => 'stu', 'PGSC0003DMG400025956' => 'stu', 'PGSC0003DMG401019151' => 'stu', 'Phvul.006G116400' => 'pvu', 'Phvul.007G097300' => 'pvu', 'Phvul.010G015000' => 'pvu', 'Phvul.010G083900' => 'pvu', 'Potri.001G117100' => 'ptr', 'Potri.002G147300' => 'ptr', 'Potri.003G115600' => 'ptr', 'Potri.006G087400' => 'ptr', 'Potri.010G226100' => 'ptr', 'Potri.014G069200' => 'ptr', 'Potri.014G104000' => 'ptr', 'Potri.016G100200' => 'ptr', 'Pp3c10_20450' => 'ppa', 'Pp3c1_42400' => 'ppa', 'Pp3c3_24390' => 'ppa', 'Pp3c3_2860' => 'ppa', 'PRCOL_00003193' => 'pco', 'Prupe.2G144500' => 'ppe', 'Prupe.2G195700' => 'ppe', 'Prupe.2G209800' => 'ppe', 'Prupe.5G080000' => 'ppe', 'Prupe.6G257900' => 'ppe', 'Psat3g001160' => 'psa', 'Psat6g181880' => 'psa', 'Psat7g233720' => 'psa', 'PSO063G7587' => 'pso', 'PSO339G2145' => 'pso', 'PSO339G3369' => 'pso', 'PSO478G2747' => 'pso', 'PSO513G0140' => 'pso', 'PSO782G1614' => 'pso', 'PSO782G4889' => 'pso', 'PSO782G5485' => 'pso', 'PSO801G0241' => 'pso', 'QL07p048854' => 'qlo', 'QL08p046745' => 'qlo', 'QL08p052606' => 'qlo', 'QL08p053414' => 'qlo', 'QL08p054868' => 'qlo', 'RcHm_v2.0_Chr1g0350251' => 'rch', 'RcHm_v2.0_Chr1g0360851' => 'rch', 'RcHm_v2.0_Chr1g0362791' => 'rch', 'RcHm_v2.0_Chr3g0466281' => 'rch', 'RcHm_v2.0_Chr7g0201481' => 'rch', 'Rhsim01G0148600' => 'rsi', 'Rhsim05G0194400' => 'rsi', 'Rhsim07G0000700' => 'rsi', 'Rhsim07G0000800' => 'rsi', 'Rhsim07G0027900' => 'rsi', 'Rhsim09G0149500' => 'rsi', 'RhsimUnG0186900' => 'rsi', 'Sabra01G0089900' => 'sbr', 'Sabra02G0114700' => 'sbr', 'Sabra02G0116300' => 'sbr', 'Sabra03G0080100' => 'sbr', 'Sabra08G0024300' => 'sbr', 'Sabra10G0174300' => 'sbr', 'Sabra14G0048900' => 'sbr', 'Sabra14G0076500' => 'sbr', 'SalBow5G2513' => 'sbo', 'Sc01g0002300' => 'sci', 'Sc01g0004450' => 'sci', 'Sc06g0001680' => 'sci', 'Sc23g0003580' => 'sci', 'Sed0000913' => 'sed', 'Sed0001655' => 'sed', 'Sed0007745' => 'sed', 'Sed0010951' => 'sed', 'Sed0017599' => 'sed', 'Sed0021405' => 'sed', 'Sed0022810' => 'sed', 'SEGI_07099' => 'sgi', 'SEGI_11931' => 'sgi', 'SEGI_13187' => 'sgi', 'SEGI_29958' => 'sgi', 'SEGI_36351' => 'sgi', 'SGA_v2.0_scaffold126G33770' => 'sas', 'SGA_v2.0_scaffold153G37003' => 'sas', 'SGA_v2.0_scaffold2G01359' => 'sas', 'SGA_v2.0_scaffold5G03064' => 'sas', 'SGA_v2.0_scaffold95G28903' => 'sas', 'SHI12701' => 'shi', 'SHI26410' => 'shi', 'SHI38997' => 'shi', 'SHI53759' => 'shi', 'SHI53886' => 'shi', 'SHI54714' => 'shi', 'SMO011G0041' => 'smo', 'SMO146G0251' => 'smo', 'SMO160G0004' => 'smo', 'SMO174G0057' => 'smo', 'SMO244G0089' => 'smo', 'SMO296G0011' => 'smo', 'Solyc01g091280.3' => 'sly', 'Solyc05g047610.3' => 'sly', 'Solyc05g047640.3' => 'sly', 'Solyc05g055630.3' => 'sly', 'Solyc10g018160.2' => 'sly', 'Solyc10g084820.2' => 'sly', 'Solyc10g086565.2' => 'sly', 'Sopen01g037030' => 'spe', 'Sopen05g027920' => 'spe', 'Sopen05g034070' => 'spe', 'Sopen10g007260' => 'spe', 'Sopen10g034260' => 'spe', 'Sopen10g035950' => 'spe', 'Sp3g07710' => 'spa', 'Sp4g27420' => 'spa', 'Sp5g02450' => 'spa', 'Sp6g01280' => 'spa', 'Sp6g38480' => 'spa', 'Sp7g20780' => 'spa', 'TAR374G1413' => 'tar', 'TAR623G1777' => 'tar', 'TAR629G2370' => 'tar', 'TAR633G1759' => 'tar', 'TAR636G3387' => 'tar', 'THA.LOC104802447' => 'tha', 'THA.LOC104813916' => 'tha', 'THA.LOC104816423' => 'tha', 'THA.LOC104817246' => 'tha', 'THA.LOC104825895' => 'tha', 'Thecc.01G335200' => 'tca', 'Thecc.01G377400' => 'tca', 'Thecc.03G262200' => 'tca', 'Thecc.05G036800' => 'tca', 'Thecc.10G080500' => 'tca', 'Thecc.10G080800' => 'tca', 'Thhalv10001560m.g' => 'esa', 'Thhalv10006120m.g' => 'esa', 'Thhalv10014375m.g' => 'esa', 'Thhalv10021264m.g' => 'esa', 'Thhalv10028856m.g' => 'esa', 'TPR.G1914' => 'tpr', 'TPR.G4757' => 'tpr', 'TPR.G5595' => 'tpr', 'TWI14G0952' => 'twi', 'TWI14G1307' => 'twi', 'TWI38G2143' => 'twi', 'TWI59G0826' => 'twi', 'TWI77G0527' => 'twi', 'TWI81G0150' => 'twi', 'unitig_21.g21018' => 'ugi', 'unitig_26.g9725' => 'ugi', 'unitig_744.g24653' => 'ugi', 'unitig_749.g13778' => 'ugi', 'unitig_899.g15035' => 'ugi', 'vmacro04296' => 'vma', 'vmacro04852' => 'vma', 'vmacro13404' => 'vma', 'vmacro20169' => 'vma', 'vmacro21014' => 'vma', 'VMungo0331G0237' => 'vmu', 'VMungo0331G0706' => 'vmu', 'VMungo0331G1361' => 'vmu', 'VMungo0331G1489' => 'vmu', 'VMungo0540G1037' => 'vmu', 'VMungo0720G2487' => 'vmu', 'VMungo0720G2721' => 'vmu', 'Zm00001eb086860' => 'zma', 'Zm00001eb104760' => 'zma', 'Zm00001eb148220' => 'zma', 'Zm00001eb259030' => 'zma', 'Zm00001eb289590' => 'zma', 'Zm00001eb420150' => 'zma' ), 'gf_id' => 'HOM05D000968', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000968' ), 'data_identifier' => 'HOM05D000968', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000968', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p31690' => 'bna', 'A03p36040' => 'bna', 'A03p53730' => 'bna', 'A04p01410' => 'bna', 'A05p05420' => 'bna', 'A05p39630' => 'bna', 'A05p39640' => 'bna', 'A09p00970' => 'bna', 'A09p53060' => 'bna', 'A10p31890' => 'bna', 'Aa31LG10G15040' => 'aar', 'Aa31LG1G21090' => 'aar', 'Aa31LG1G26900' => 'aar', 'Aa31LG3G1820' => 'aar', 'Aa31LG5G1100' => 'aar', 'Aa31LG6G4740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2265' => 'aag', 'Actinidia07998' => 'ach', 'Actinidia11266' => 'ach', 'Actinidia12682' => 'ach', 'Actinidia26479' => 'ach', 'Actinidia31406' => 'ach', 'Actinidia32437' => 'ach', 'Actinidia38862' => 'ach', 'Ah.05g174230' => 'amhyb', 'Ah.05g179070' => 'amhyb', 'Ah.05g179090' => 'amhyb', 'Ah.12g059950' => 'amhyb', 'AL3G20480' => 'aly', 'AL4G44520' => 'aly', 'AL5G43110' => 'aly', 'AL6G13890' => 'aly', 'AL6G52620' => 'aly', 'AL7G30830' => 'aly', 'Aqoxy1G00899' => 'aox', 'Aqoxy5G04333' => 'aox', 'Aqoxy7G00641' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3IZ0NN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4EF6AW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W9P8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79GA3M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C43NQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFCU6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G95YVJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCHK29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LU1UG8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX91RN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGB4B1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8DA0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9H7JI' => 'arhy', 'AT3G09320' => 'ath', 'AT3G60800' => 'ath', 'AT4G00840' => 'ath', 'AT4G22750' => 'ath', 'AT5G04270' => 'ath', 'ATR0090G003' => 'atr', 'ATR0559G349' => 'atr', 'ATR0680G261' => 'atr', 'ATR0810G048' => 'atr', 'Atru.chr12.831' => 'acertr', 'Atru.chr5.303' => 'acertr', 'Atru.chr5.748' => 'acertr', 'Atru.chr8.1999' => 'acertr', 'Atru.chr9.1436' => 'acertr', 'AUR62004211' => 'cqu', 'AUR62004548' => 'cqu', 'AUR62013637' => 'cqu', 'AUR62022662' => 'cqu', 'AUR62025777' => 'cqu', 'AUR62042386' => 'cqu', 'BcaB01g02310' => 'bca', 'BcaB01g06062' => 'bca', 'BcaB02g08975' => 'bca', 'BcaB02g08980' => 'bca', 'BcaC01g04228' => 'bca', 'BcaC01g06830' => 'bca', 'BcaC02g10186' => 'bca', 'BcaC02g12214' => 'bca', 'BcaC04g24101' => 'bca', 'BcaC05g29520' => 'bca', 'BcaC05g29661' => 'bca', 'BcaC06g32130' => 'bca', 'BcaC06g32131' => 'bca', 'BcaC07g40601' => 'bca', 'BcaC07g42641' => 'bca', 'BcaNung01038' => 'bca', 'BcaNung01676' => 'bca', 'BcaNung02480' => 'bca', 'BcaNung07376' => 'bca', 'BolC3t16146H' => 'bol', 'BolC3t16637H' => 'bol', 'BolC4t22257H' => 'bol', 'BolC4t24728H' => 'bol', 'BolC5t34517H' => 'bol', 'BolC7t45703H' => 'bol', 'BolC8t51166H' => 'bol', 'BolC9t53038H' => 'bol', 'BolC9t60000H' => 'bol', 'BraA01t01345Z' => 'bra', 'BraA01t01346Z' => 'bra', 'BraA01t01348Z' => 'bra', 'BraA03t12347Z' => 'bra', 'BraA03t12775Z' => 'bra', 'BraA03t14439Z' => 'bra', 'BraA04t15860Z' => 'bra', 'BraA05t19511Z' => 'bra', 'BraA05t22746Z' => 'bra', 'BraA09t35767Z' => 'bra', 'BraA09t40732Z' => 'bra', 'BraA10t45233Z' => 'bra', 'C03p38720' => 'bna', 'C03p43680' => 'bna', 'C04p06350' => 'bna', 'C04p31800' => 'bna', 'C05p58680' => 'bna', 'C07p52110' => 'bna', 'C08p35760' => 'bna', 'C09p01050' => 'bna', 'C09p72600' => 'bna', 'CAN.G106.2' => 'can', 'CAN.G1482.1' => 'can', 'CAN.G324.12' => 'can', 'CAN.G388.20' => 'can', 'CAN.G412.7' => 'can', 'CAN.G694.32' => 'can', 'CAN.G92.12' => 'can', 'CANSAT11G2353' => 'cansat', 'CANSAT21G1398' => 'cansat', 'CANSAT56G2456' => 'cansat', 'CANSAT56G3031' => 'cansat', 'CANSAT56G4539' => 'cansat', 'CARHR083680' => 'chi', 'CARHR171190' => 'chi', 'CARHR209010' => 'chi', 'CARHR229680' => 'chi', 'CARHR249490' => 'chi', 'Carub.0003s0844' => 'cru', 'Carub.0005s2755' => 'cru', 'Carub.0006s0322' => 'cru', 'Carub.0006s3586' => 'cru', 'Carub.0007s1855' => 'cru', 'Ca_07808_v3' => 'car', 'Ca_09535_v3' => 'car', 'Ca_10548_v3' => 'car', 'Ca_19913_v3' => 'car', 'Ca_19916_v3' => 'car', 'Ca_19975_v3' => 'car', 'CBR_g22876' => 'cbr', 'CBR_g22879' => 'cbr', 'CBR_g38491' => 'cbr', 'CBR_g54185' => 'cbr', 'CBR_g54190' => 'cbr', 'Cc02_g11020' => 'ccan', 'Cc02_g23920' => 'ccan', 'Cc02_g39860' => 'ccan', 'Cc02_g39870' => 'ccan', 'Cc03_g06760' => 'ccan', 'Cc06_g02450' => 'ccan', 'Cc09_g09450' => 'ccan', 'CDE02G1959' => 'cde', 'CDE04G0600' => 'cde', 'CDE07G1996' => 'cde', 'CDE07G2078' => 'cde', 'CDE11G0611' => 'cde', 'Cfa001683' => 'cfa', 'Cfa001734' => 'cfa', 'Cfa001737' => 'cfa', 'Cfa003751' => 'cfa', 'Cfa012019' => 'cfa', 'Cfa017353' => 'cfa', 'Cfa017732' => 'cfa', 'Cfa022464' => 'cfa', 'Ciclev10012400m.g' => 'ccl', 'Ciclev10021242m.g' => 'ccl', 'Ciclev10021302m.g' => 'ccl', 'Ciclev10021463m.g' => 'ccl', 'Ciclev10032359m.g' => 'ccl', 'CiPaw.01G081000' => 'cil', 'CiPaw.01G262500' => 'cil', 'CiPaw.01G269800' => 'cil', 'CiPaw.02G168400' => 'cil', 'CiPaw.05G119500' => 'cil', 'CiPaw.11G147300' => 'cil', 'ClCG01G003630' => 'cla', 'ClCG05G000510' => 'cla', 'ClCG05G002300' => 'cla', 'ClCG08G007650' => 'cla', 'ClCG10G021250' => 'cla', 'COL.COLO4_06218' => 'col', 'COL.COLO4_12538' => 'col', 'COL.COLO4_14775' => 'col', 'COL.COLO4_23875' => 'col', 'Cpa.g.sc141.16' => 'cpa', 'Cpa.g.sc169.16' => 'cpa', 'Cpa.g.sc244.4' => 'cpa', 'Cpa.g.sc244.5' => 'cpa', 'Cpa.g.sc29.87' => 'cpa', 'Cpa.g.sc53.115' => 'cpa', 'Cre03.g207502' => 'cre', 'Cre06.g277000' => 'cre', 'Cre09.g394050' => 'cre', 'CsaV3_3G007680' => 'csa', 'CsaV3_3G009710' => 'csa', 'CsaV3_3G034790' => 'csa', 'CsaV3_5G003750' => 'csa', 'CsaV3_6G036620' => 'csa', 'CSS0002288' => 'camsi', 'CSS0011250' => 'camsi', 'CSS0021619' => 'camsi', 'CSS0046701' => 'camsi', 'DCAR_006420' => 'dca', 'DCAR_006865' => 'dca', 'DCAR_008558' => 'dca', 'DCAR_028754' => 'dca', 'DCAR_028755' => 'dca', 'Dinv31218' => 'din', 'Dinv32371' => 'din', 'Dinv34250' => 'din', 'Dinv37156' => 'din', 'Dinv43704' => 'din', 'Duzib093G1811' => 'dzi', 'Duzib106G1622' => 'dzi', 'Duzib114G0504' => 'dzi', 'Duzib128G0338' => 'dzi', 'Duzib128G1577' => 'dzi', 'Duzib133G0104' => 'dzi', 'Duzib133G1080' => 'dzi', 'Duzib138G0324' => 'dzi', 'Duzib138G0394' => 'dzi', 'Duzib205G0122' => 'dzi', 'Duzib268G1020' => 'dzi', 'Duzib268G1359' => 'dzi', 'ECA232G3929' => 'eca', 'ECA236G2210' => 'eca', 'ECA236G2287' => 'eca', 'ECA240G4568' => 'eca', 'ECA247G0894' => 'eca', 'EL10Ac1g00200' => 'bvu', 'EL10Ac1g00886' => 'bvu', 'EL10As1g23091' => 'bvu', 'EL10As1g23092' => 'bvu', 'Eucgr.A01284' => 'egr', 'Eucgr.A01285' => 'egr', 'Eucgr.D02456' => 'egr', 'Eucgr.E00018' => 'egr', 'Eucgr.E01439' => 'egr', 'Eucgr.G02859' => 'egr', 'FAN01G0168' => 'fan', 'FAN01G0453' => 'fan', 'FAN01G2761' => 'fan', 'FAN02G1239' => 'fan', 'FAN03G0645' => 'fan', 'FAN03G2707' => 'fan', 'FAN03G2978' => 'fan', 'FAN04G0227' => 'fan', 'FAN06G0091' => 'fan', 'FAN06G1418' => 'fan', 'FAN06G1512' => 'fan', 'FAN06G1986' => 'fan', 'FAN06G2905' => 'fan', 'FAN06G4325' => 'fan', 'FAN08G0033' => 'fan', 'FAN09G0642' => 'fan', 'FAN10G1763' => 'fan', 'FAN10G2026' => 'fan', 'FAN10G2513' => 'fan', 'FAN10G3402' => 'fan', 'FAN10G3564' => 'fan', 'FAN10G3987' => 'fan', 'FAN13G1490' => 'fan', 'FAN14G5857' => 'fan', 'FAN18G1188' => 'fan', 'FvH4_5g00750' => 'fve', 'FvH4_6g13410' => 'fve', 'FvH4_7g11740' => 'fve', 'FvH4_7g17410' => 'fve', 'FvH4_7g18860' => 'fve', 'Glyma.01G099100' => 'gma', 'Glyma.01G142300' => 'gma', 'Glyma.03G025500' => 'gma', 'Glyma.03G069700' => 'gma', 'Glyma.03G260000' => 'gma', 'Glyma.09G269800' => 'gma', 'Glyma.10G208700' => 'gma', 'Glyma.18G220400' => 'gma', 'Glyma.20G182000' => 'gma', 'Gohir.A01G221726' => 'ghi', 'Gohir.A07G134600' => 'ghi', 'Gohir.A07G146000' => 'ghi', 'Gohir.A08G173900' => 'ghi', 'Gohir.A09G194900' => 'ghi', 'Gohir.A10G204100' => 'ghi', 'Gohir.A11G080600' => 'ghi', 'Gohir.A11G327500' => 'ghi', 'Gohir.A12G101800' => 'ghi', 'Gohir.D01G211200' => 'ghi', 'Gohir.D07G139200' => 'ghi', 'Gohir.D07G152100' => 'ghi', 'Gohir.D08G192600' => 'ghi', 'Gohir.D09G189200' => 'ghi', 'Gohir.D10G212000' => 'ghi', 'Gohir.D11G085200' => 'ghi', 'Gohir.D11G346400' => 'ghi', 'Gohir.D12G104800' => 'ghi', 'Gorai.001G151300' => 'gra', 'Gorai.001G174100' => 'gra', 'Gorai.002G257000' => 'gra', 'Gorai.004G202600' => 'gra', 'Gorai.007G090900' => 'gra', 'Gorai.007G376700' => 'gra', 'Gorai.008G114100' => 'gra', 'Gorai.011G237900' => 'gra', 'GSVIVG01005450001' => 'vvi', 'GSVIVG01016232001' => 'vvi', 'GSVIVG01026157001' => 'vvi', 'GSVIVG01027419001' => 'vvi', 'GSVIVG01027631001' => 'vvi', 'GSVIVG01034143001' => 'vvi', 'HanXRQChr03g0093921' => 'han', 'HanXRQChr04g0120001' => 'han', 'HanXRQChr04g0122561' => 'han', 'HanXRQChr09g0246851' => 'han', 'HanXRQChr10g0293311' => 'han', 'HanXRQChr13g0425231' => 'han', 'HanXRQChr16g0532571' => 'han', 'Haze_09050' => 'cav', 'Haze_15715' => 'cav', 'Haze_15716' => 'cav', 'Haze_16803' => 'cav', 'Haze_16850' => 'cav', 'Hma1.2p1_0301F.1_g118655' => 'hma', 'Hma1.2p1_0309F.1_g120590' => 'hma', 'Hma1.2p1_0936F.1_g238900' => 'hma', 'Hma1.2p1_3552F.1_g336740' => 'hma', 'HPP92_003520' => 'vpl', 'HPP92_006628' => 'vpl', 'HPP92_006645' => 'vpl', 'HPP92_014669' => 'vpl', 'HPP92_015077' => 'vpl', 'Hund16742' => 'sun', 'Hund17022' => 'sun', 'Lalb_Chr02g0152131' => 'lal', 'Lalb_Chr05g0225371' => 'lal', 'Lalb_Chr07g0189841' => 'lal', 'Lalb_Chr07g0192961' => 'lal', 'Lalb_Chr12g0208221' => 'lal', 'Lalb_Chr13g0291211' => 'lal', 'Lalb_Chr13g0291781' => 'lal', 'Lalb_Chr18g0044651' => 'lal', 'Lalb_Chr21g0313731' => 'lal', 'Lj1g0022533' => 'lja', 'Lj2A18T50' => 'lonja', 'Lj2A92G93' => 'lonja', 'Lj3A965T73' => 'lonja', 'Lj3g0000673' => 'lja', 'Lj3g0002666' => 'lja', 'Lj4g0016985' => 'lja', 'Lj5g0003625' => 'lja', 'Lj7A529G36' => 'lonja', 'Lj9A569T49' => 'lonja', 'Lj9A604T63' => 'lonja', 'Lsat_1_v5_gn_3_132060' => 'lsa', 'Lsat_1_v5_gn_4_68941' => 'lsa', 'Lsat_1_v5_gn_5_95580' => 'lsa', 'Lsat_1_v5_gn_7_161' => 'lsa', 'Lsat_1_v5_gn_7_7041' => 'lsa', 'Lsat_1_v5_gn_9_33481' => 'lsa', 'Lsat_1_v5_gn_9_68260' => 'lsa', 'Manes.01G073100' => 'mes', 'Manes.01G266300' => 'mes', 'Manes.02G033300' => 'mes', 'Manes.05G017900' => 'mes', 'Manes.05G046100' => 'mes', 'Manes.08G080900' => 'mes', 'Manes.10G049400' => 'mes', 'Mapoly0009s0186' => 'mpo', 'Mapoly0036s0118' => 'mpo', 'Mapoly0101s0046' => 'mpo', 'MBI04_g30218_MAGBIO' => 'mbi', 'MBI04_g35564_MAGBIO' => 'mbi', 'MBI12_g34011_MAGBIO' => 'mbi', 'MBI14_g04655_MAGBIO' => 'mbi', 'MCO07G653' => 'mco', 'MCO10G173' => 'mco', 'MD01G1087100' => 'mdo', 'MD01G1104200' => 'mdo', 'MD02G1205100' => 'mdo', 'MD04G1079200' => 'mdo', 'MD04G1131400' => 'mdo', 'MD07G1121600' => 'mdo', 'MD07G1157300' => 'mdo', 'MD07G1171000' => 'mdo', 'MD12G1144500' => 'mdo', 'Medtr1g094610' => 'mtr', 'Medtr4g021795' => 'mtr', 'Medtr4g023760' => 'mtr', 'Medtr7g118050' => 'mtr', 'MELO3C005582.2' => 'cme', 'MELO3C005989.2' => 'cme', 'MELO3C006192.2' => 'cme', 'MELO3C009248.2' => 'cme', 'MELO3C019817.2' => 'cme', 'Migut.B01625' => 'egut', 'Migut.B01915' => 'egut', 'Migut.F01721' => 'egut', 'Migut.J00314' => 'egut', 'MSTRG.20742' => 'ama', 'MSTRG.8134' => 'ama', 'Nitab4.5_0000096g0010' => 'nta', 'Nitab4.5_0000202g0030' => 'nta', 'Nitab4.5_0000216g0370' => 'nta', 'Nitab4.5_0000457g0230' => 'nta', 'Nitab4.5_0001702g0170' => 'nta', 'Nitab4.5_0003607g0010' => 'nta', 'Nitab4.5_0004917g0020' => 'nta', 'Nitab4.5_0007059g0010' => 'nta', 'Nitab4.5_0007184g0010' => 'nta', 'Nitab4.5_0007346g0020' => 'nta', 'Nn1g00410' => 'nnu', 'Nn1g01252' => 'nnu', 'Nn2g11168' => 'nnu', 'Nn2g13403' => 'nnu', 'Nn2g13760' => 'nnu', 'Nn4g26380' => 'nnu', 'Oeu000806.2' => 'oeu', 'Oeu005788.1' => 'oeu', 'Oeu006900.3' => 'oeu', 'Oeu007797.1' => 'oeu', 'Oeu011932.1' => 'oeu', 'Oeu022739.1' => 'oeu', 'Oeu037918.1' => 'oeu', 'Oeu055490.2' => 'oeu', 'Os01g0844400' => 'osa', 'Os02g0819100' => 'osa', 'Os03g0804300' => 'osa', 'Os05g0458000' => 'osa', 'Os07g0467800' => 'osa', 'Os12g0602200' => 'osa', 'Peaxi162Scf00013g03444' => 'pax', 'Peaxi162Scf00094g01120' => 'pax', 'Peaxi162Scf00191g01211' => 'pax', 'Peaxi162Scf00238g01110' => 'pax', 'Peaxi162Scf00330g00719' => 'pax', 'Peaxi162Scf00627g00018' => 'pax', 'PGR031G2686' => 'pgr', 'PGR042G0809' => 'pgr', 'PGR142G0193' => 'pgr', 'PGSC0003DMG400011066' => 'stu', 'PGSC0003DMG400012041' => 'stu', 'PGSC0003DMG400013678' => 'stu', 'PGSC0003DMG400023477' => 'stu', 'PGSC0003DMG400025956' => 'stu', 'PGSC0003DMG401019151' => 'stu', 'Phvul.006G116400' => 'pvu', 'Phvul.007G097300' => 'pvu', 'Phvul.010G015000' => 'pvu', 'Phvul.010G083900' => 'pvu', 'Potri.001G117100' => 'ptr', 'Potri.002G147300' => 'ptr', 'Potri.003G115600' => 'ptr', 'Potri.006G087400' => 'ptr', 'Potri.010G226100' => 'ptr', 'Potri.014G069200' => 'ptr', 'Potri.014G104000' => 'ptr', 'Potri.016G100200' => 'ptr', 'Pp3c10_20450' => 'ppa', 'Pp3c1_42400' => 'ppa', 'Pp3c3_24390' => 'ppa', 'Pp3c3_2860' => 'ppa', 'PRCOL_00003193' => 'pco', 'Prupe.2G144500' => 'ppe', 'Prupe.2G195700' => 'ppe', 'Prupe.2G209800' => 'ppe', 'Prupe.5G080000' => 'ppe', 'Prupe.6G257900' => 'ppe', 'Psat3g001160' => 'psa', 'Psat6g181880' => 'psa', 'Psat7g233720' => 'psa', 'PSO063G7587' => 'pso', 'PSO339G2145' => 'pso', 'PSO339G3369' => 'pso', 'PSO478G2747' => 'pso', 'PSO513G0140' => 'pso', 'PSO782G1614' => 'pso', 'PSO782G4889' => 'pso', 'PSO782G5485' => 'pso', 'PSO801G0241' => 'pso', 'QL07p048854' => 'qlo', 'QL08p046745' => 'qlo', 'QL08p052606' => 'qlo', 'QL08p053414' => 'qlo', 'QL08p054868' => 'qlo', 'RcHm_v2.0_Chr1g0350251' => 'rch', 'RcHm_v2.0_Chr1g0360851' => 'rch', 'RcHm_v2.0_Chr1g0362791' => 'rch', 'RcHm_v2.0_Chr3g0466281' => 'rch', 'RcHm_v2.0_Chr7g0201481' => 'rch', 'Rhsim01G0148600' => 'rsi', 'Rhsim05G0194400' => 'rsi', 'Rhsim07G0000700' => 'rsi', 'Rhsim07G0000800' => 'rsi', 'Rhsim07G0027900' => 'rsi', 'Rhsim09G0149500' => 'rsi', 'RhsimUnG0186900' => 'rsi', 'Sabra01G0089900' => 'sbr', 'Sabra02G0114700' => 'sbr', 'Sabra02G0116300' => 'sbr', 'Sabra03G0080100' => 'sbr', 'Sabra08G0024300' => 'sbr', 'Sabra10G0174300' => 'sbr', 'Sabra14G0048900' => 'sbr', 'Sabra14G0076500' => 'sbr', 'SalBow5G2513' => 'sbo', 'Sc01g0002300' => 'sci', 'Sc01g0004450' => 'sci', 'Sc06g0001680' => 'sci', 'Sc23g0003580' => 'sci', 'Sed0000913' => 'sed', 'Sed0001655' => 'sed', 'Sed0007745' => 'sed', 'Sed0010951' => 'sed', 'Sed0017599' => 'sed', 'Sed0021405' => 'sed', 'Sed0022810' => 'sed', 'SEGI_07099' => 'sgi', 'SEGI_11931' => 'sgi', 'SEGI_13187' => 'sgi', 'SEGI_29958' => 'sgi', 'SEGI_36351' => 'sgi', 'SGA_v2.0_scaffold126G33770' => 'sas', 'SGA_v2.0_scaffold153G37003' => 'sas', 'SGA_v2.0_scaffold2G01359' => 'sas', 'SGA_v2.0_scaffold5G03064' => 'sas', 'SGA_v2.0_scaffold95G28903' => 'sas', 'SHI12701' => 'shi', 'SHI26410' => 'shi', 'SHI38997' => 'shi', 'SHI53759' => 'shi', 'SHI53886' => 'shi', 'SHI54714' => 'shi', 'SMO011G0041' => 'smo', 'SMO146G0251' => 'smo', 'SMO160G0004' => 'smo', 'SMO174G0057' => 'smo', 'SMO244G0089' => 'smo', 'SMO296G0011' => 'smo', 'Solyc01g091280.3' => 'sly', 'Solyc05g047610.3' => 'sly', 'Solyc05g047640.3' => 'sly', 'Solyc05g055630.3' => 'sly', 'Solyc10g018160.2' => 'sly', 'Solyc10g084820.2' => 'sly', 'Solyc10g086565.2' => 'sly', 'Sopen01g037030' => 'spe', 'Sopen05g027920' => 'spe', 'Sopen05g034070' => 'spe', 'Sopen10g007260' => 'spe', 'Sopen10g034260' => 'spe', 'Sopen10g035950' => 'spe', 'Sp3g07710' => 'spa', 'Sp4g27420' => 'spa', 'Sp5g02450' => 'spa', 'Sp6g01280' => 'spa', 'Sp6g38480' => 'spa', 'Sp7g20780' => 'spa', 'TAR374G1413' => 'tar', 'TAR623G1777' => 'tar', 'TAR629G2370' => 'tar', 'TAR633G1759' => 'tar', 'TAR636G3387' => 'tar', 'THA.LOC104802447' => 'tha', 'THA.LOC104813916' => 'tha', 'THA.LOC104816423' => 'tha', 'THA.LOC104817246' => 'tha', 'THA.LOC104825895' => 'tha', 'Thecc.01G335200' => 'tca', 'Thecc.01G377400' => 'tca', 'Thecc.03G262200' => 'tca', 'Thecc.05G036800' => 'tca', 'Thecc.10G080500' => 'tca', 'Thecc.10G080800' => 'tca', 'Thhalv10001560m.g' => 'esa', 'Thhalv10006120m.g' => 'esa', 'Thhalv10014375m.g' => 'esa', 'Thhalv10021264m.g' => 'esa', 'Thhalv10028856m.g' => 'esa', 'TPR.G1914' => 'tpr', 'TPR.G4757' => 'tpr', 'TPR.G5595' => 'tpr', 'TWI14G0952' => 'twi', 'TWI14G1307' => 'twi', 'TWI38G2143' => 'twi', 'TWI59G0826' => 'twi', 'TWI77G0527' => 'twi', 'TWI81G0150' => 'twi', 'unitig_21.g21018' => 'ugi', 'unitig_26.g9725' => 'ugi', 'unitig_744.g24653' => 'ugi', 'unitig_749.g13778' => 'ugi', 'unitig_899.g15035' => 'ugi', 'vmacro04296' => 'vma', 'vmacro04852' => 'vma', 'vmacro13404' => 'vma', 'vmacro20169' => 'vma', 'vmacro21014' => 'vma', 'VMungo0331G0237' => 'vmu', 'VMungo0331G0706' => 'vmu', 'VMungo0331G1361' => 'vmu', 'VMungo0331G1489' => 'vmu', 'VMungo0540G1037' => 'vmu', 'VMungo0720G2487' => 'vmu', 'VMungo0720G2721' => 'vmu', 'Zm00001eb086860' => 'zma', 'Zm00001eb104760' => 'zma', 'Zm00001eb148220' => 'zma', 'Zm00001eb259030' => 'zma', 'Zm00001eb289590' => 'zma', 'Zm00001eb420150' => 'zma' ) $gf_id = 'HOM05D000968' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000968' ) $data_identifier = 'HOM05D000968' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 19, 'bol' => (int) 9, 'bra' => (int) 12, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 5, 'ccan' => (int) 7, 'cde' => (int) 5, 'cfa' => (int) 8, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 4, 'dca' => (int) 5, 'din' => (int) 5, 'dzi' => (int) 12, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 25, 'fve' => (int) 5, 'gma' => (int) 9, 'ghi' => (int) 18, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 7, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 5, 'sun' => (int) 2, 'lal' => (int) 9, 'lja' => (int) 5, 'lonja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 9, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 2, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 3, 'stu' => (int) 6, 'pvu' => (int) 4, 'ptr' => (int) 8, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 3, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 1, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 5, 'sas' => (int) 5, 'shi' => (int) 6, 'smo' => (int) 6, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 3, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420150' $species_info = array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ) $local_species = 'cbr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000968', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p31690' => 'bna', 'A03p36040' => 'bna', 'A03p53730' => 'bna', 'A04p01410' => 'bna', 'A05p05420' => 'bna', 'A05p39630' => 'bna', 'A05p39640' => 'bna', 'A09p00970' => 'bna', 'A09p53060' => 'bna', 'A10p31890' => 'bna', 'Aa31LG10G15040' => 'aar', 'Aa31LG1G21090' => 'aar', 'Aa31LG1G26900' => 'aar', 'Aa31LG3G1820' => 'aar', 'Aa31LG5G1100' => 'aar', 'Aa31LG6G4740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2265' => 'aag', 'Actinidia07998' => 'ach', 'Actinidia11266' => 'ach', 'Actinidia12682' => 'ach', 'Actinidia26479' => 'ach', 'Actinidia31406' => 'ach', 'Actinidia32437' => 'ach', 'Actinidia38862' => 'ach', 'Ah.05g174230' => 'amhyb', 'Ah.05g179070' => 'amhyb', 'Ah.05g179090' => 'amhyb', 'Ah.12g059950' => 'amhyb', 'AL3G20480' => 'aly', 'AL4G44520' => 'aly', 'AL5G43110' => 'aly', 'AL6G13890' => 'aly', 'AL6G52620' => 'aly', 'AL7G30830' => 'aly', 'Aqoxy1G00899' => 'aox', 'Aqoxy5G04333' => 'aox', 'Aqoxy7G00641' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3IZ0NN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4EF6AW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W9P8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79GA3M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C43NQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFCU6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G95YVJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCHK29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LU1UG8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX91RN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGB4B1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8DA0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9H7JI' => 'arhy', 'AT3G09320' => 'ath', 'AT3G60800' => 'ath', 'AT4G00840' => 'ath', 'AT4G22750' => 'ath', 'AT5G04270' => 'ath', 'ATR0090G003' => 'atr', 'ATR0559G349' => 'atr', 'ATR0680G261' => 'atr', 'ATR0810G048' => 'atr', 'Atru.chr12.831' => 'acertr', 'Atru.chr5.303' => 'acertr', 'Atru.chr5.748' => 'acertr', 'Atru.chr8.1999' => 'acertr', 'Atru.chr9.1436' => 'acertr', 'AUR62004211' => 'cqu', 'AUR62004548' => 'cqu', 'AUR62013637' => 'cqu', 'AUR62022662' => 'cqu', 'AUR62025777' => 'cqu', 'AUR62042386' => 'cqu', 'BcaB01g02310' => 'bca', 'BcaB01g06062' => 'bca', 'BcaB02g08975' => 'bca', 'BcaB02g08980' => 'bca', 'BcaC01g04228' => 'bca', 'BcaC01g06830' => 'bca', 'BcaC02g10186' => 'bca', 'BcaC02g12214' => 'bca', 'BcaC04g24101' => 'bca', 'BcaC05g29520' => 'bca', 'BcaC05g29661' => 'bca', 'BcaC06g32130' => 'bca', 'BcaC06g32131' => 'bca', 'BcaC07g40601' => 'bca', 'BcaC07g42641' => 'bca', 'BcaNung01038' => 'bca', 'BcaNung01676' => 'bca', 'BcaNung02480' => 'bca', 'BcaNung07376' => 'bca', 'BolC3t16146H' => 'bol', 'BolC3t16637H' => 'bol', 'BolC4t22257H' => 'bol', 'BolC4t24728H' => 'bol', 'BolC5t34517H' => 'bol', 'BolC7t45703H' => 'bol', 'BolC8t51166H' => 'bol', 'BolC9t53038H' => 'bol', 'BolC9t60000H' => 'bol', 'BraA01t01345Z' => 'bra', 'BraA01t01346Z' => 'bra', 'BraA01t01348Z' => 'bra', 'BraA03t12347Z' => 'bra', 'BraA03t12775Z' => 'bra', 'BraA03t14439Z' => 'bra', 'BraA04t15860Z' => 'bra', 'BraA05t19511Z' => 'bra', 'BraA05t22746Z' => 'bra', 'BraA09t35767Z' => 'bra', 'BraA09t40732Z' => 'bra', 'BraA10t45233Z' => 'bra', 'C03p38720' => 'bna', 'C03p43680' => 'bna', 'C04p06350' => 'bna', 'C04p31800' => 'bna', 'C05p58680' => 'bna', 'C07p52110' => 'bna', 'C08p35760' => 'bna', 'C09p01050' => 'bna', 'C09p72600' => 'bna', 'CAN.G106.2' => 'can', 'CAN.G1482.1' => 'can', 'CAN.G324.12' => 'can', 'CAN.G388.20' => 'can', 'CAN.G412.7' => 'can', 'CAN.G694.32' => 'can', 'CAN.G92.12' => 'can', 'CANSAT11G2353' => 'cansat', 'CANSAT21G1398' => 'cansat', 'CANSAT56G2456' => 'cansat', 'CANSAT56G3031' => 'cansat', 'CANSAT56G4539' => 'cansat', 'CARHR083680' => 'chi', 'CARHR171190' => 'chi', 'CARHR209010' => 'chi', 'CARHR229680' => 'chi', 'CARHR249490' => 'chi', 'Carub.0003s0844' => 'cru', 'Carub.0005s2755' => 'cru', 'Carub.0006s0322' => 'cru', 'Carub.0006s3586' => 'cru', 'Carub.0007s1855' => 'cru', 'Ca_07808_v3' => 'car', 'Ca_09535_v3' => 'car', 'Ca_10548_v3' => 'car', 'Ca_19913_v3' => 'car', 'Ca_19916_v3' => 'car', 'Ca_19975_v3' => 'car', 'CBR_g22876' => 'cbr', 'CBR_g22879' => 'cbr', 'CBR_g38491' => 'cbr', 'CBR_g54185' => 'cbr', 'CBR_g54190' => 'cbr', 'Cc02_g11020' => 'ccan', 'Cc02_g23920' => 'ccan', 'Cc02_g39860' => 'ccan', 'Cc02_g39870' => 'ccan', 'Cc03_g06760' => 'ccan', 'Cc06_g02450' => 'ccan', 'Cc09_g09450' => 'ccan', 'CDE02G1959' => 'cde', 'CDE04G0600' => 'cde', 'CDE07G1996' => 'cde', 'CDE07G2078' => 'cde', 'CDE11G0611' => 'cde', 'Cfa001683' => 'cfa', 'Cfa001734' => 'cfa', 'Cfa001737' => 'cfa', 'Cfa003751' => 'cfa', 'Cfa012019' => 'cfa', 'Cfa017353' => 'cfa', 'Cfa017732' => 'cfa', 'Cfa022464' => 'cfa', 'Ciclev10012400m.g' => 'ccl', 'Ciclev10021242m.g' => 'ccl', 'Ciclev10021302m.g' => 'ccl', 'Ciclev10021463m.g' => 'ccl', 'Ciclev10032359m.g' => 'ccl', 'CiPaw.01G081000' => 'cil', 'CiPaw.01G262500' => 'cil', 'CiPaw.01G269800' => 'cil', 'CiPaw.02G168400' => 'cil', 'CiPaw.05G119500' => 'cil', 'CiPaw.11G147300' => 'cil', 'ClCG01G003630' => 'cla', 'ClCG05G000510' => 'cla', 'ClCG05G002300' => 'cla', 'ClCG08G007650' => 'cla', 'ClCG10G021250' => 'cla', 'COL.COLO4_06218' => 'col', 'COL.COLO4_12538' => 'col', 'COL.COLO4_14775' => 'col', 'COL.COLO4_23875' => 'col', 'Cpa.g.sc141.16' => 'cpa', 'Cpa.g.sc169.16' => 'cpa', 'Cpa.g.sc244.4' => 'cpa', 'Cpa.g.sc244.5' => 'cpa', 'Cpa.g.sc29.87' => 'cpa', 'Cpa.g.sc53.115' => 'cpa', 'Cre03.g207502' => 'cre', 'Cre06.g277000' => 'cre', 'Cre09.g394050' => 'cre', 'CsaV3_3G007680' => 'csa', 'CsaV3_3G009710' => 'csa', 'CsaV3_3G034790' => 'csa', 'CsaV3_5G003750' => 'csa', 'CsaV3_6G036620' => 'csa', 'CSS0002288' => 'camsi', 'CSS0011250' => 'camsi', 'CSS0021619' => 'camsi', 'CSS0046701' => 'camsi', 'DCAR_006420' => 'dca', 'DCAR_006865' => 'dca', 'DCAR_008558' => 'dca', 'DCAR_028754' => 'dca', 'DCAR_028755' => 'dca', 'Dinv31218' => 'din', 'Dinv32371' => 'din', 'Dinv34250' => 'din', 'Dinv37156' => 'din', 'Dinv43704' => 'din', 'Duzib093G1811' => 'dzi', 'Duzib106G1622' => 'dzi', 'Duzib114G0504' => 'dzi', 'Duzib128G0338' => 'dzi', 'Duzib128G1577' => 'dzi', 'Duzib133G0104' => 'dzi', 'Duzib133G1080' => 'dzi', 'Duzib138G0324' => 'dzi', 'Duzib138G0394' => 'dzi', 'Duzib205G0122' => 'dzi', 'Duzib268G1020' => 'dzi', 'Duzib268G1359' => 'dzi', 'ECA232G3929' => 'eca', 'ECA236G2210' => 'eca', 'ECA236G2287' => 'eca', 'ECA240G4568' => 'eca', 'ECA247G0894' => 'eca', 'EL10Ac1g00200' => 'bvu', 'EL10Ac1g00886' => 'bvu', 'EL10As1g23091' => 'bvu', 'EL10As1g23092' => 'bvu', 'Eucgr.A01284' => 'egr', 'Eucgr.A01285' => 'egr', 'Eucgr.D02456' => 'egr', 'Eucgr.E00018' => 'egr', 'Eucgr.E01439' => 'egr', 'Eucgr.G02859' => 'egr', 'FAN01G0168' => 'fan', 'FAN01G0453' => 'fan', 'FAN01G2761' => 'fan', 'FAN02G1239' => 'fan', 'FAN03G0645' => 'fan', 'FAN03G2707' => 'fan', 'FAN03G2978' => 'fan', 'FAN04G0227' => 'fan', 'FAN06G0091' => 'fan', 'FAN06G1418' => 'fan', 'FAN06G1512' => 'fan', 'FAN06G1986' => 'fan', 'FAN06G2905' => 'fan', 'FAN06G4325' => 'fan', 'FAN08G0033' => 'fan', 'FAN09G0642' => 'fan', 'FAN10G1763' => 'fan', 'FAN10G2026' => 'fan', 'FAN10G2513' => 'fan', 'FAN10G3402' => 'fan', 'FAN10G3564' => 'fan', 'FAN10G3987' => 'fan', 'FAN13G1490' => 'fan', 'FAN14G5857' => 'fan', 'FAN18G1188' => 'fan', 'FvH4_5g00750' => 'fve', 'FvH4_6g13410' => 'fve', 'FvH4_7g11740' => 'fve', 'FvH4_7g17410' => 'fve', 'FvH4_7g18860' => 'fve', 'Glyma.01G099100' => 'gma', 'Glyma.01G142300' => 'gma', 'Glyma.03G025500' => 'gma', 'Glyma.03G069700' => 'gma', 'Glyma.03G260000' => 'gma', 'Glyma.09G269800' => 'gma', 'Glyma.10G208700' => 'gma', 'Glyma.18G220400' => 'gma', 'Glyma.20G182000' => 'gma', 'Gohir.A01G221726' => 'ghi', 'Gohir.A07G134600' => 'ghi', 'Gohir.A07G146000' => 'ghi', 'Gohir.A08G173900' => 'ghi', 'Gohir.A09G194900' => 'ghi', 'Gohir.A10G204100' => 'ghi', 'Gohir.A11G080600' => 'ghi', 'Gohir.A11G327500' => 'ghi', 'Gohir.A12G101800' => 'ghi', 'Gohir.D01G211200' => 'ghi', 'Gohir.D07G139200' => 'ghi', 'Gohir.D07G152100' => 'ghi', 'Gohir.D08G192600' => 'ghi', 'Gohir.D09G189200' => 'ghi', 'Gohir.D10G212000' => 'ghi', 'Gohir.D11G085200' => 'ghi', 'Gohir.D11G346400' => 'ghi', 'Gohir.D12G104800' => 'ghi', 'Gorai.001G151300' => 'gra', 'Gorai.001G174100' => 'gra', 'Gorai.002G257000' => 'gra', 'Gorai.004G202600' => 'gra', 'Gorai.007G090900' => 'gra', 'Gorai.007G376700' => 'gra', 'Gorai.008G114100' => 'gra', 'Gorai.011G237900' => 'gra', 'GSVIVG01005450001' => 'vvi', 'GSVIVG01016232001' => 'vvi', 'GSVIVG01026157001' => 'vvi', 'GSVIVG01027419001' => 'vvi', 'GSVIVG01027631001' => 'vvi', 'GSVIVG01034143001' => 'vvi', 'HanXRQChr03g0093921' => 'han', 'HanXRQChr04g0120001' => 'han', 'HanXRQChr04g0122561' => 'han', 'HanXRQChr09g0246851' => 'han', 'HanXRQChr10g0293311' => 'han', 'HanXRQChr13g0425231' => 'han', 'HanXRQChr16g0532571' => 'han', 'Haze_09050' => 'cav', 'Haze_15715' => 'cav', 'Haze_15716' => 'cav', 'Haze_16803' => 'cav', 'Haze_16850' => 'cav', 'Hma1.2p1_0301F.1_g118655' => 'hma', 'Hma1.2p1_0309F.1_g120590' => 'hma', 'Hma1.2p1_0936F.1_g238900' => 'hma', 'Hma1.2p1_3552F.1_g336740' => 'hma', 'HPP92_003520' => 'vpl', 'HPP92_006628' => 'vpl', 'HPP92_006645' => 'vpl', 'HPP92_014669' => 'vpl', 'HPP92_015077' => 'vpl', 'Hund16742' => 'sun', 'Hund17022' => 'sun', 'Lalb_Chr02g0152131' => 'lal', 'Lalb_Chr05g0225371' => 'lal', 'Lalb_Chr07g0189841' => 'lal', 'Lalb_Chr07g0192961' => 'lal', 'Lalb_Chr12g0208221' => 'lal', 'Lalb_Chr13g0291211' => 'lal', 'Lalb_Chr13g0291781' => 'lal', 'Lalb_Chr18g0044651' => 'lal', 'Lalb_Chr21g0313731' => 'lal', 'Lj1g0022533' => 'lja', 'Lj2A18T50' => 'lonja', 'Lj2A92G93' => 'lonja', 'Lj3A965T73' => 'lonja', 'Lj3g0000673' => 'lja', 'Lj3g0002666' => 'lja', 'Lj4g0016985' => 'lja', 'Lj5g0003625' => 'lja', 'Lj7A529G36' => 'lonja', 'Lj9A569T49' => 'lonja', 'Lj9A604T63' => 'lonja', 'Lsat_1_v5_gn_3_132060' => 'lsa', 'Lsat_1_v5_gn_4_68941' => 'lsa', 'Lsat_1_v5_gn_5_95580' => 'lsa', 'Lsat_1_v5_gn_7_161' => 'lsa', 'Lsat_1_v5_gn_7_7041' => 'lsa', 'Lsat_1_v5_gn_9_33481' => 'lsa', 'Lsat_1_v5_gn_9_68260' => 'lsa', 'Manes.01G073100' => 'mes', 'Manes.01G266300' => 'mes', 'Manes.02G033300' => 'mes', 'Manes.05G017900' => 'mes', 'Manes.05G046100' => 'mes', 'Manes.08G080900' => 'mes', 'Manes.10G049400' => 'mes', 'Mapoly0009s0186' => 'mpo', 'Mapoly0036s0118' => 'mpo', 'Mapoly0101s0046' => 'mpo', 'MBI04_g30218_MAGBIO' => 'mbi', 'MBI04_g35564_MAGBIO' => 'mbi', 'MBI12_g34011_MAGBIO' => 'mbi', 'MBI14_g04655_MAGBIO' => 'mbi', 'MCO07G653' => 'mco', 'MCO10G173' => 'mco', 'MD01G1087100' => 'mdo', 'MD01G1104200' => 'mdo', 'MD02G1205100' => 'mdo', 'MD04G1079200' => 'mdo', 'MD04G1131400' => 'mdo', 'MD07G1121600' => 'mdo', 'MD07G1157300' => 'mdo', 'MD07G1171000' => 'mdo', 'MD12G1144500' => 'mdo', 'Medtr1g094610' => 'mtr', 'Medtr4g021795' => 'mtr', 'Medtr4g023760' => 'mtr', 'Medtr7g118050' => 'mtr', 'MELO3C005582.2' => 'cme', 'MELO3C005989.2' => 'cme', 'MELO3C006192.2' => 'cme', 'MELO3C009248.2' => 'cme', 'MELO3C019817.2' => 'cme', 'Migut.B01625' => 'egut', 'Migut.B01915' => 'egut', 'Migut.F01721' => 'egut', 'Migut.J00314' => 'egut', 'MSTRG.20742' => 'ama', 'MSTRG.8134' => 'ama', 'Nitab4.5_0000096g0010' => 'nta', 'Nitab4.5_0000202g0030' => 'nta', 'Nitab4.5_0000216g0370' => 'nta', 'Nitab4.5_0000457g0230' => 'nta', 'Nitab4.5_0001702g0170' => 'nta', 'Nitab4.5_0003607g0010' => 'nta', 'Nitab4.5_0004917g0020' => 'nta', 'Nitab4.5_0007059g0010' => 'nta', 'Nitab4.5_0007184g0010' => 'nta', 'Nitab4.5_0007346g0020' => 'nta', 'Nn1g00410' => 'nnu', 'Nn1g01252' => 'nnu', 'Nn2g11168' => 'nnu', 'Nn2g13403' => 'nnu', 'Nn2g13760' => 'nnu', 'Nn4g26380' => 'nnu', 'Oeu000806.2' => 'oeu', 'Oeu005788.1' => 'oeu', 'Oeu006900.3' => 'oeu', 'Oeu007797.1' => 'oeu', 'Oeu011932.1' => 'oeu', 'Oeu022739.1' => 'oeu', 'Oeu037918.1' => 'oeu', 'Oeu055490.2' => 'oeu', 'Os01g0844400' => 'osa', 'Os02g0819100' => 'osa', 'Os03g0804300' => 'osa', 'Os05g0458000' => 'osa', 'Os07g0467800' => 'osa', 'Os12g0602200' => 'osa', 'Peaxi162Scf00013g03444' => 'pax', 'Peaxi162Scf00094g01120' => 'pax', 'Peaxi162Scf00191g01211' => 'pax', 'Peaxi162Scf00238g01110' => 'pax', 'Peaxi162Scf00330g00719' => 'pax', 'Peaxi162Scf00627g00018' => 'pax', 'PGR031G2686' => 'pgr', 'PGR042G0809' => 'pgr', 'PGR142G0193' => 'pgr', 'PGSC0003DMG400011066' => 'stu', 'PGSC0003DMG400012041' => 'stu', 'PGSC0003DMG400013678' => 'stu', 'PGSC0003DMG400023477' => 'stu', 'PGSC0003DMG400025956' => 'stu', 'PGSC0003DMG401019151' => 'stu', 'Phvul.006G116400' => 'pvu', 'Phvul.007G097300' => 'pvu', 'Phvul.010G015000' => 'pvu', 'Phvul.010G083900' => 'pvu', 'Potri.001G117100' => 'ptr', 'Potri.002G147300' => 'ptr', 'Potri.003G115600' => 'ptr', 'Potri.006G087400' => 'ptr', 'Potri.010G226100' => 'ptr', 'Potri.014G069200' => 'ptr', 'Potri.014G104000' => 'ptr', 'Potri.016G100200' => 'ptr', 'Pp3c10_20450' => 'ppa', 'Pp3c1_42400' => 'ppa', 'Pp3c3_24390' => 'ppa', 'Pp3c3_2860' => 'ppa', 'PRCOL_00003193' => 'pco', 'Prupe.2G144500' => 'ppe', 'Prupe.2G195700' => 'ppe', 'Prupe.2G209800' => 'ppe', 'Prupe.5G080000' => 'ppe', 'Prupe.6G257900' => 'ppe', 'Psat3g001160' => 'psa', 'Psat6g181880' => 'psa', 'Psat7g233720' => 'psa', 'PSO063G7587' => 'pso', 'PSO339G2145' => 'pso', 'PSO339G3369' => 'pso', 'PSO478G2747' => 'pso', 'PSO513G0140' => 'pso', 'PSO782G1614' => 'pso', 'PSO782G4889' => 'pso', 'PSO782G5485' => 'pso', 'PSO801G0241' => 'pso', 'QL07p048854' => 'qlo', 'QL08p046745' => 'qlo', 'QL08p052606' => 'qlo', 'QL08p053414' => 'qlo', 'QL08p054868' => 'qlo', 'RcHm_v2.0_Chr1g0350251' => 'rch', 'RcHm_v2.0_Chr1g0360851' => 'rch', 'RcHm_v2.0_Chr1g0362791' => 'rch', 'RcHm_v2.0_Chr3g0466281' => 'rch', 'RcHm_v2.0_Chr7g0201481' => 'rch', 'Rhsim01G0148600' => 'rsi', 'Rhsim05G0194400' => 'rsi', 'Rhsim07G0000700' => 'rsi', 'Rhsim07G0000800' => 'rsi', 'Rhsim07G0027900' => 'rsi', 'Rhsim09G0149500' => 'rsi', 'RhsimUnG0186900' => 'rsi', 'Sabra01G0089900' => 'sbr', 'Sabra02G0114700' => 'sbr', 'Sabra02G0116300' => 'sbr', 'Sabra03G0080100' => 'sbr', 'Sabra08G0024300' => 'sbr', 'Sabra10G0174300' => 'sbr', 'Sabra14G0048900' => 'sbr', 'Sabra14G0076500' => 'sbr', 'SalBow5G2513' => 'sbo', 'Sc01g0002300' => 'sci', 'Sc01g0004450' => 'sci', 'Sc06g0001680' => 'sci', 'Sc23g0003580' => 'sci', 'Sed0000913' => 'sed', 'Sed0001655' => 'sed', 'Sed0007745' => 'sed', 'Sed0010951' => 'sed', 'Sed0017599' => 'sed', 'Sed0021405' => 'sed', 'Sed0022810' => 'sed', 'SEGI_07099' => 'sgi', 'SEGI_11931' => 'sgi', 'SEGI_13187' => 'sgi', 'SEGI_29958' => 'sgi', 'SEGI_36351' => 'sgi', 'SGA_v2.0_scaffold126G33770' => 'sas', 'SGA_v2.0_scaffold153G37003' => 'sas', 'SGA_v2.0_scaffold2G01359' => 'sas', 'SGA_v2.0_scaffold5G03064' => 'sas', 'SGA_v2.0_scaffold95G28903' => 'sas', 'SHI12701' => 'shi', 'SHI26410' => 'shi', 'SHI38997' => 'shi', 'SHI53759' => 'shi', 'SHI53886' => 'shi', 'SHI54714' => 'shi', 'SMO011G0041' => 'smo', 'SMO146G0251' => 'smo', 'SMO160G0004' => 'smo', 'SMO174G0057' => 'smo', 'SMO244G0089' => 'smo', 'SMO296G0011' => 'smo', 'Solyc01g091280.3' => 'sly', 'Solyc05g047610.3' => 'sly', 'Solyc05g047640.3' => 'sly', 'Solyc05g055630.3' => 'sly', 'Solyc10g018160.2' => 'sly', 'Solyc10g084820.2' => 'sly', 'Solyc10g086565.2' => 'sly', 'Sopen01g037030' => 'spe', 'Sopen05g027920' => 'spe', 'Sopen05g034070' => 'spe', 'Sopen10g007260' => 'spe', 'Sopen10g034260' => 'spe', 'Sopen10g035950' => 'spe', 'Sp3g07710' => 'spa', 'Sp4g27420' => 'spa', 'Sp5g02450' => 'spa', 'Sp6g01280' => 'spa', 'Sp6g38480' => 'spa', 'Sp7g20780' => 'spa', 'TAR374G1413' => 'tar', 'TAR623G1777' => 'tar', 'TAR629G2370' => 'tar', 'TAR633G1759' => 'tar', 'TAR636G3387' => 'tar', 'THA.LOC104802447' => 'tha', 'THA.LOC104813916' => 'tha', 'THA.LOC104816423' => 'tha', 'THA.LOC104817246' => 'tha', 'THA.LOC104825895' => 'tha', 'Thecc.01G335200' => 'tca', 'Thecc.01G377400' => 'tca', 'Thecc.03G262200' => 'tca', 'Thecc.05G036800' => 'tca', 'Thecc.10G080500' => 'tca', 'Thecc.10G080800' => 'tca', 'Thhalv10001560m.g' => 'esa', 'Thhalv10006120m.g' => 'esa', 'Thhalv10014375m.g' => 'esa', 'Thhalv10021264m.g' => 'esa', 'Thhalv10028856m.g' => 'esa', 'TPR.G1914' => 'tpr', 'TPR.G4757' => 'tpr', 'TPR.G5595' => 'tpr', 'TWI14G0952' => 'twi', 'TWI14G1307' => 'twi', 'TWI38G2143' => 'twi', 'TWI59G0826' => 'twi', 'TWI77G0527' => 'twi', 'TWI81G0150' => 'twi', 'unitig_21.g21018' => 'ugi', 'unitig_26.g9725' => 'ugi', 'unitig_744.g24653' => 'ugi', 'unitig_749.g13778' => 'ugi', 'unitig_899.g15035' => 'ugi', 'vmacro04296' => 'vma', 'vmacro04852' => 'vma', 'vmacro13404' => 'vma', 'vmacro20169' => 'vma', 'vmacro21014' => 'vma', 'VMungo0331G0237' => 'vmu', 'VMungo0331G0706' => 'vmu', 'VMungo0331G1361' => 'vmu', 'VMungo0331G1489' => 'vmu', 'VMungo0540G1037' => 'vmu', 'VMungo0720G2487' => 'vmu', 'VMungo0720G2721' => 'vmu', 'Zm00001eb086860' => 'zma', 'Zm00001eb104760' => 'zma', 'Zm00001eb148220' => 'zma', 'Zm00001eb259030' => 'zma', 'Zm00001eb289590' => 'zma', 'Zm00001eb420150' => 'zma' ), 'gf_id' => 'HOM05D000968', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000968' ), 'data_identifier' => 'HOM05D000968', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000968', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p31690' => 'bna', 'A03p36040' => 'bna', 'A03p53730' => 'bna', 'A04p01410' => 'bna', 'A05p05420' => 'bna', 'A05p39630' => 'bna', 'A05p39640' => 'bna', 'A09p00970' => 'bna', 'A09p53060' => 'bna', 'A10p31890' => 'bna', 'Aa31LG10G15040' => 'aar', 'Aa31LG1G21090' => 'aar', 'Aa31LG1G26900' => 'aar', 'Aa31LG3G1820' => 'aar', 'Aa31LG5G1100' => 'aar', 'Aa31LG6G4740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2265' => 'aag', 'Actinidia07998' => 'ach', 'Actinidia11266' => 'ach', 'Actinidia12682' => 'ach', 'Actinidia26479' => 'ach', 'Actinidia31406' => 'ach', 'Actinidia32437' => 'ach', 'Actinidia38862' => 'ach', 'Ah.05g174230' => 'amhyb', 'Ah.05g179070' => 'amhyb', 'Ah.05g179090' => 'amhyb', 'Ah.12g059950' => 'amhyb', 'AL3G20480' => 'aly', 'AL4G44520' => 'aly', 'AL5G43110' => 'aly', 'AL6G13890' => 'aly', 'AL6G52620' => 'aly', 'AL7G30830' => 'aly', 'Aqoxy1G00899' => 'aox', 'Aqoxy5G04333' => 'aox', 'Aqoxy7G00641' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3IZ0NN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4EF6AW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W9P8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79GA3M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C43NQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFCU6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G95YVJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCHK29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LU1UG8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX91RN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGB4B1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8DA0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9H7JI' => 'arhy', 'AT3G09320' => 'ath', 'AT3G60800' => 'ath', 'AT4G00840' => 'ath', 'AT4G22750' => 'ath', 'AT5G04270' => 'ath', 'ATR0090G003' => 'atr', 'ATR0559G349' => 'atr', 'ATR0680G261' => 'atr', 'ATR0810G048' => 'atr', 'Atru.chr12.831' => 'acertr', 'Atru.chr5.303' => 'acertr', 'Atru.chr5.748' => 'acertr', 'Atru.chr8.1999' => 'acertr', 'Atru.chr9.1436' => 'acertr', 'AUR62004211' => 'cqu', 'AUR62004548' => 'cqu', 'AUR62013637' => 'cqu', 'AUR62022662' => 'cqu', 'AUR62025777' => 'cqu', 'AUR62042386' => 'cqu', 'BcaB01g02310' => 'bca', 'BcaB01g06062' => 'bca', 'BcaB02g08975' => 'bca', 'BcaB02g08980' => 'bca', 'BcaC01g04228' => 'bca', 'BcaC01g06830' => 'bca', 'BcaC02g10186' => 'bca', 'BcaC02g12214' => 'bca', 'BcaC04g24101' => 'bca', 'BcaC05g29520' => 'bca', 'BcaC05g29661' => 'bca', 'BcaC06g32130' => 'bca', 'BcaC06g32131' => 'bca', 'BcaC07g40601' => 'bca', 'BcaC07g42641' => 'bca', 'BcaNung01038' => 'bca', 'BcaNung01676' => 'bca', 'BcaNung02480' => 'bca', 'BcaNung07376' => 'bca', 'BolC3t16146H' => 'bol', 'BolC3t16637H' => 'bol', 'BolC4t22257H' => 'bol', 'BolC4t24728H' => 'bol', 'BolC5t34517H' => 'bol', 'BolC7t45703H' => 'bol', 'BolC8t51166H' => 'bol', 'BolC9t53038H' => 'bol', 'BolC9t60000H' => 'bol', 'BraA01t01345Z' => 'bra', 'BraA01t01346Z' => 'bra', 'BraA01t01348Z' => 'bra', 'BraA03t12347Z' => 'bra', 'BraA03t12775Z' => 'bra', 'BraA03t14439Z' => 'bra', 'BraA04t15860Z' => 'bra', 'BraA05t19511Z' => 'bra', 'BraA05t22746Z' => 'bra', 'BraA09t35767Z' => 'bra', 'BraA09t40732Z' => 'bra', 'BraA10t45233Z' => 'bra', 'C03p38720' => 'bna', 'C03p43680' => 'bna', 'C04p06350' => 'bna', 'C04p31800' => 'bna', 'C05p58680' => 'bna', 'C07p52110' => 'bna', 'C08p35760' => 'bna', 'C09p01050' => 'bna', 'C09p72600' => 'bna', 'CAN.G106.2' => 'can', 'CAN.G1482.1' => 'can', 'CAN.G324.12' => 'can', 'CAN.G388.20' => 'can', 'CAN.G412.7' => 'can', 'CAN.G694.32' => 'can', 'CAN.G92.12' => 'can', 'CANSAT11G2353' => 'cansat', 'CANSAT21G1398' => 'cansat', 'CANSAT56G2456' => 'cansat', 'CANSAT56G3031' => 'cansat', 'CANSAT56G4539' => 'cansat', 'CARHR083680' => 'chi', 'CARHR171190' => 'chi', 'CARHR209010' => 'chi', 'CARHR229680' => 'chi', 'CARHR249490' => 'chi', 'Carub.0003s0844' => 'cru', 'Carub.0005s2755' => 'cru', 'Carub.0006s0322' => 'cru', 'Carub.0006s3586' => 'cru', 'Carub.0007s1855' => 'cru', 'Ca_07808_v3' => 'car', 'Ca_09535_v3' => 'car', 'Ca_10548_v3' => 'car', 'Ca_19913_v3' => 'car', 'Ca_19916_v3' => 'car', 'Ca_19975_v3' => 'car', 'CBR_g22876' => 'cbr', 'CBR_g22879' => 'cbr', 'CBR_g38491' => 'cbr', 'CBR_g54185' => 'cbr', 'CBR_g54190' => 'cbr', 'Cc02_g11020' => 'ccan', 'Cc02_g23920' => 'ccan', 'Cc02_g39860' => 'ccan', 'Cc02_g39870' => 'ccan', 'Cc03_g06760' => 'ccan', 'Cc06_g02450' => 'ccan', 'Cc09_g09450' => 'ccan', 'CDE02G1959' => 'cde', 'CDE04G0600' => 'cde', 'CDE07G1996' => 'cde', 'CDE07G2078' => 'cde', 'CDE11G0611' => 'cde', 'Cfa001683' => 'cfa', 'Cfa001734' => 'cfa', 'Cfa001737' => 'cfa', 'Cfa003751' => 'cfa', 'Cfa012019' => 'cfa', 'Cfa017353' => 'cfa', 'Cfa017732' => 'cfa', 'Cfa022464' => 'cfa', 'Ciclev10012400m.g' => 'ccl', 'Ciclev10021242m.g' => 'ccl', 'Ciclev10021302m.g' => 'ccl', 'Ciclev10021463m.g' => 'ccl', 'Ciclev10032359m.g' => 'ccl', 'CiPaw.01G081000' => 'cil', 'CiPaw.01G262500' => 'cil', 'CiPaw.01G269800' => 'cil', 'CiPaw.02G168400' => 'cil', 'CiPaw.05G119500' => 'cil', 'CiPaw.11G147300' => 'cil', 'ClCG01G003630' => 'cla', 'ClCG05G000510' => 'cla', 'ClCG05G002300' => 'cla', 'ClCG08G007650' => 'cla', 'ClCG10G021250' => 'cla', 'COL.COLO4_06218' => 'col', 'COL.COLO4_12538' => 'col', 'COL.COLO4_14775' => 'col', 'COL.COLO4_23875' => 'col', 'Cpa.g.sc141.16' => 'cpa', 'Cpa.g.sc169.16' => 'cpa', 'Cpa.g.sc244.4' => 'cpa', 'Cpa.g.sc244.5' => 'cpa', 'Cpa.g.sc29.87' => 'cpa', 'Cpa.g.sc53.115' => 'cpa', 'Cre03.g207502' => 'cre', 'Cre06.g277000' => 'cre', 'Cre09.g394050' => 'cre', 'CsaV3_3G007680' => 'csa', 'CsaV3_3G009710' => 'csa', 'CsaV3_3G034790' => 'csa', 'CsaV3_5G003750' => 'csa', 'CsaV3_6G036620' => 'csa', 'CSS0002288' => 'camsi', 'CSS0011250' => 'camsi', 'CSS0021619' => 'camsi', 'CSS0046701' => 'camsi', 'DCAR_006420' => 'dca', 'DCAR_006865' => 'dca', 'DCAR_008558' => 'dca', 'DCAR_028754' => 'dca', 'DCAR_028755' => 'dca', 'Dinv31218' => 'din', 'Dinv32371' => 'din', 'Dinv34250' => 'din', 'Dinv37156' => 'din', 'Dinv43704' => 'din', 'Duzib093G1811' => 'dzi', 'Duzib106G1622' => 'dzi', 'Duzib114G0504' => 'dzi', 'Duzib128G0338' => 'dzi', 'Duzib128G1577' => 'dzi', 'Duzib133G0104' => 'dzi', 'Duzib133G1080' => 'dzi', 'Duzib138G0324' => 'dzi', 'Duzib138G0394' => 'dzi', 'Duzib205G0122' => 'dzi', 'Duzib268G1020' => 'dzi', 'Duzib268G1359' => 'dzi', 'ECA232G3929' => 'eca', 'ECA236G2210' => 'eca', 'ECA236G2287' => 'eca', 'ECA240G4568' => 'eca', 'ECA247G0894' => 'eca', 'EL10Ac1g00200' => 'bvu', 'EL10Ac1g00886' => 'bvu', 'EL10As1g23091' => 'bvu', 'EL10As1g23092' => 'bvu', 'Eucgr.A01284' => 'egr', 'Eucgr.A01285' => 'egr', 'Eucgr.D02456' => 'egr', 'Eucgr.E00018' => 'egr', 'Eucgr.E01439' => 'egr', 'Eucgr.G02859' => 'egr', 'FAN01G0168' => 'fan', 'FAN01G0453' => 'fan', 'FAN01G2761' => 'fan', 'FAN02G1239' => 'fan', 'FAN03G0645' => 'fan', 'FAN03G2707' => 'fan', 'FAN03G2978' => 'fan', 'FAN04G0227' => 'fan', 'FAN06G0091' => 'fan', 'FAN06G1418' => 'fan', 'FAN06G1512' => 'fan', 'FAN06G1986' => 'fan', 'FAN06G2905' => 'fan', 'FAN06G4325' => 'fan', 'FAN08G0033' => 'fan', 'FAN09G0642' => 'fan', 'FAN10G1763' => 'fan', 'FAN10G2026' => 'fan', 'FAN10G2513' => 'fan', 'FAN10G3402' => 'fan', 'FAN10G3564' => 'fan', 'FAN10G3987' => 'fan', 'FAN13G1490' => 'fan', 'FAN14G5857' => 'fan', 'FAN18G1188' => 'fan', 'FvH4_5g00750' => 'fve', 'FvH4_6g13410' => 'fve', 'FvH4_7g11740' => 'fve', 'FvH4_7g17410' => 'fve', 'FvH4_7g18860' => 'fve', 'Glyma.01G099100' => 'gma', 'Glyma.01G142300' => 'gma', 'Glyma.03G025500' => 'gma', 'Glyma.03G069700' => 'gma', 'Glyma.03G260000' => 'gma', 'Glyma.09G269800' => 'gma', 'Glyma.10G208700' => 'gma', 'Glyma.18G220400' => 'gma', 'Glyma.20G182000' => 'gma', 'Gohir.A01G221726' => 'ghi', 'Gohir.A07G134600' => 'ghi', 'Gohir.A07G146000' => 'ghi', 'Gohir.A08G173900' => 'ghi', 'Gohir.A09G194900' => 'ghi', 'Gohir.A10G204100' => 'ghi', 'Gohir.A11G080600' => 'ghi', 'Gohir.A11G327500' => 'ghi', 'Gohir.A12G101800' => 'ghi', 'Gohir.D01G211200' => 'ghi', 'Gohir.D07G139200' => 'ghi', 'Gohir.D07G152100' => 'ghi', 'Gohir.D08G192600' => 'ghi', 'Gohir.D09G189200' => 'ghi', 'Gohir.D10G212000' => 'ghi', 'Gohir.D11G085200' => 'ghi', 'Gohir.D11G346400' => 'ghi', 'Gohir.D12G104800' => 'ghi', 'Gorai.001G151300' => 'gra', 'Gorai.001G174100' => 'gra', 'Gorai.002G257000' => 'gra', 'Gorai.004G202600' => 'gra', 'Gorai.007G090900' => 'gra', 'Gorai.007G376700' => 'gra', 'Gorai.008G114100' => 'gra', 'Gorai.011G237900' => 'gra', 'GSVIVG01005450001' => 'vvi', 'GSVIVG01016232001' => 'vvi', 'GSVIVG01026157001' => 'vvi', 'GSVIVG01027419001' => 'vvi', 'GSVIVG01027631001' => 'vvi', 'GSVIVG01034143001' => 'vvi', 'HanXRQChr03g0093921' => 'han', 'HanXRQChr04g0120001' => 'han', 'HanXRQChr04g0122561' => 'han', 'HanXRQChr09g0246851' => 'han', 'HanXRQChr10g0293311' => 'han', 'HanXRQChr13g0425231' => 'han', 'HanXRQChr16g0532571' => 'han', 'Haze_09050' => 'cav', 'Haze_15715' => 'cav', 'Haze_15716' => 'cav', 'Haze_16803' => 'cav', 'Haze_16850' => 'cav', 'Hma1.2p1_0301F.1_g118655' => 'hma', 'Hma1.2p1_0309F.1_g120590' => 'hma', 'Hma1.2p1_0936F.1_g238900' => 'hma', 'Hma1.2p1_3552F.1_g336740' => 'hma', 'HPP92_003520' => 'vpl', 'HPP92_006628' => 'vpl', 'HPP92_006645' => 'vpl', 'HPP92_014669' => 'vpl', 'HPP92_015077' => 'vpl', 'Hund16742' => 'sun', 'Hund17022' => 'sun', 'Lalb_Chr02g0152131' => 'lal', 'Lalb_Chr05g0225371' => 'lal', 'Lalb_Chr07g0189841' => 'lal', 'Lalb_Chr07g0192961' => 'lal', 'Lalb_Chr12g0208221' => 'lal', 'Lalb_Chr13g0291211' => 'lal', 'Lalb_Chr13g0291781' => 'lal', 'Lalb_Chr18g0044651' => 'lal', 'Lalb_Chr21g0313731' => 'lal', 'Lj1g0022533' => 'lja', 'Lj2A18T50' => 'lonja', 'Lj2A92G93' => 'lonja', 'Lj3A965T73' => 'lonja', 'Lj3g0000673' => 'lja', 'Lj3g0002666' => 'lja', 'Lj4g0016985' => 'lja', 'Lj5g0003625' => 'lja', 'Lj7A529G36' => 'lonja', 'Lj9A569T49' => 'lonja', 'Lj9A604T63' => 'lonja', 'Lsat_1_v5_gn_3_132060' => 'lsa', 'Lsat_1_v5_gn_4_68941' => 'lsa', 'Lsat_1_v5_gn_5_95580' => 'lsa', 'Lsat_1_v5_gn_7_161' => 'lsa', 'Lsat_1_v5_gn_7_7041' => 'lsa', 'Lsat_1_v5_gn_9_33481' => 'lsa', 'Lsat_1_v5_gn_9_68260' => 'lsa', 'Manes.01G073100' => 'mes', 'Manes.01G266300' => 'mes', 'Manes.02G033300' => 'mes', 'Manes.05G017900' => 'mes', 'Manes.05G046100' => 'mes', 'Manes.08G080900' => 'mes', 'Manes.10G049400' => 'mes', 'Mapoly0009s0186' => 'mpo', 'Mapoly0036s0118' => 'mpo', 'Mapoly0101s0046' => 'mpo', 'MBI04_g30218_MAGBIO' => 'mbi', 'MBI04_g35564_MAGBIO' => 'mbi', 'MBI12_g34011_MAGBIO' => 'mbi', 'MBI14_g04655_MAGBIO' => 'mbi', 'MCO07G653' => 'mco', 'MCO10G173' => 'mco', 'MD01G1087100' => 'mdo', 'MD01G1104200' => 'mdo', 'MD02G1205100' => 'mdo', 'MD04G1079200' => 'mdo', 'MD04G1131400' => 'mdo', 'MD07G1121600' => 'mdo', 'MD07G1157300' => 'mdo', 'MD07G1171000' => 'mdo', 'MD12G1144500' => 'mdo', 'Medtr1g094610' => 'mtr', 'Medtr4g021795' => 'mtr', 'Medtr4g023760' => 'mtr', 'Medtr7g118050' => 'mtr', 'MELO3C005582.2' => 'cme', 'MELO3C005989.2' => 'cme', 'MELO3C006192.2' => 'cme', 'MELO3C009248.2' => 'cme', 'MELO3C019817.2' => 'cme', 'Migut.B01625' => 'egut', 'Migut.B01915' => 'egut', 'Migut.F01721' => 'egut', 'Migut.J00314' => 'egut', 'MSTRG.20742' => 'ama', 'MSTRG.8134' => 'ama', 'Nitab4.5_0000096g0010' => 'nta', 'Nitab4.5_0000202g0030' => 'nta', 'Nitab4.5_0000216g0370' => 'nta', 'Nitab4.5_0000457g0230' => 'nta', 'Nitab4.5_0001702g0170' => 'nta', 'Nitab4.5_0003607g0010' => 'nta', 'Nitab4.5_0004917g0020' => 'nta', 'Nitab4.5_0007059g0010' => 'nta', 'Nitab4.5_0007184g0010' => 'nta', 'Nitab4.5_0007346g0020' => 'nta', 'Nn1g00410' => 'nnu', 'Nn1g01252' => 'nnu', 'Nn2g11168' => 'nnu', 'Nn2g13403' => 'nnu', 'Nn2g13760' => 'nnu', 'Nn4g26380' => 'nnu', 'Oeu000806.2' => 'oeu', 'Oeu005788.1' => 'oeu', 'Oeu006900.3' => 'oeu', 'Oeu007797.1' => 'oeu', 'Oeu011932.1' => 'oeu', 'Oeu022739.1' => 'oeu', 'Oeu037918.1' => 'oeu', 'Oeu055490.2' => 'oeu', 'Os01g0844400' => 'osa', 'Os02g0819100' => 'osa', 'Os03g0804300' => 'osa', 'Os05g0458000' => 'osa', 'Os07g0467800' => 'osa', 'Os12g0602200' => 'osa', 'Peaxi162Scf00013g03444' => 'pax', 'Peaxi162Scf00094g01120' => 'pax', 'Peaxi162Scf00191g01211' => 'pax', 'Peaxi162Scf00238g01110' => 'pax', 'Peaxi162Scf00330g00719' => 'pax', 'Peaxi162Scf00627g00018' => 'pax', 'PGR031G2686' => 'pgr', 'PGR042G0809' => 'pgr', 'PGR142G0193' => 'pgr', 'PGSC0003DMG400011066' => 'stu', 'PGSC0003DMG400012041' => 'stu', 'PGSC0003DMG400013678' => 'stu', 'PGSC0003DMG400023477' => 'stu', 'PGSC0003DMG400025956' => 'stu', 'PGSC0003DMG401019151' => 'stu', 'Phvul.006G116400' => 'pvu', 'Phvul.007G097300' => 'pvu', 'Phvul.010G015000' => 'pvu', 'Phvul.010G083900' => 'pvu', 'Potri.001G117100' => 'ptr', 'Potri.002G147300' => 'ptr', 'Potri.003G115600' => 'ptr', 'Potri.006G087400' => 'ptr', 'Potri.010G226100' => 'ptr', 'Potri.014G069200' => 'ptr', 'Potri.014G104000' => 'ptr', 'Potri.016G100200' => 'ptr', 'Pp3c10_20450' => 'ppa', 'Pp3c1_42400' => 'ppa', 'Pp3c3_24390' => 'ppa', 'Pp3c3_2860' => 'ppa', 'PRCOL_00003193' => 'pco', 'Prupe.2G144500' => 'ppe', 'Prupe.2G195700' => 'ppe', 'Prupe.2G209800' => 'ppe', 'Prupe.5G080000' => 'ppe', 'Prupe.6G257900' => 'ppe', 'Psat3g001160' => 'psa', 'Psat6g181880' => 'psa', 'Psat7g233720' => 'psa', 'PSO063G7587' => 'pso', 'PSO339G2145' => 'pso', 'PSO339G3369' => 'pso', 'PSO478G2747' => 'pso', 'PSO513G0140' => 'pso', 'PSO782G1614' => 'pso', 'PSO782G4889' => 'pso', 'PSO782G5485' => 'pso', 'PSO801G0241' => 'pso', 'QL07p048854' => 'qlo', 'QL08p046745' => 'qlo', 'QL08p052606' => 'qlo', 'QL08p053414' => 'qlo', 'QL08p054868' => 'qlo', 'RcHm_v2.0_Chr1g0350251' => 'rch', 'RcHm_v2.0_Chr1g0360851' => 'rch', 'RcHm_v2.0_Chr1g0362791' => 'rch', 'RcHm_v2.0_Chr3g0466281' => 'rch', 'RcHm_v2.0_Chr7g0201481' => 'rch', 'Rhsim01G0148600' => 'rsi', 'Rhsim05G0194400' => 'rsi', 'Rhsim07G0000700' => 'rsi', 'Rhsim07G0000800' => 'rsi', 'Rhsim07G0027900' => 'rsi', 'Rhsim09G0149500' => 'rsi', 'RhsimUnG0186900' => 'rsi', 'Sabra01G0089900' => 'sbr', 'Sabra02G0114700' => 'sbr', 'Sabra02G0116300' => 'sbr', 'Sabra03G0080100' => 'sbr', 'Sabra08G0024300' => 'sbr', 'Sabra10G0174300' => 'sbr', 'Sabra14G0048900' => 'sbr', 'Sabra14G0076500' => 'sbr', 'SalBow5G2513' => 'sbo', 'Sc01g0002300' => 'sci', 'Sc01g0004450' => 'sci', 'Sc06g0001680' => 'sci', 'Sc23g0003580' => 'sci', 'Sed0000913' => 'sed', 'Sed0001655' => 'sed', 'Sed0007745' => 'sed', 'Sed0010951' => 'sed', 'Sed0017599' => 'sed', 'Sed0021405' => 'sed', 'Sed0022810' => 'sed', 'SEGI_07099' => 'sgi', 'SEGI_11931' => 'sgi', 'SEGI_13187' => 'sgi', 'SEGI_29958' => 'sgi', 'SEGI_36351' => 'sgi', 'SGA_v2.0_scaffold126G33770' => 'sas', 'SGA_v2.0_scaffold153G37003' => 'sas', 'SGA_v2.0_scaffold2G01359' => 'sas', 'SGA_v2.0_scaffold5G03064' => 'sas', 'SGA_v2.0_scaffold95G28903' => 'sas', 'SHI12701' => 'shi', 'SHI26410' => 'shi', 'SHI38997' => 'shi', 'SHI53759' => 'shi', 'SHI53886' => 'shi', 'SHI54714' => 'shi', 'SMO011G0041' => 'smo', 'SMO146G0251' => 'smo', 'SMO160G0004' => 'smo', 'SMO174G0057' => 'smo', 'SMO244G0089' => 'smo', 'SMO296G0011' => 'smo', 'Solyc01g091280.3' => 'sly', 'Solyc05g047610.3' => 'sly', 'Solyc05g047640.3' => 'sly', 'Solyc05g055630.3' => 'sly', 'Solyc10g018160.2' => 'sly', 'Solyc10g084820.2' => 'sly', 'Solyc10g086565.2' => 'sly', 'Sopen01g037030' => 'spe', 'Sopen05g027920' => 'spe', 'Sopen05g034070' => 'spe', 'Sopen10g007260' => 'spe', 'Sopen10g034260' => 'spe', 'Sopen10g035950' => 'spe', 'Sp3g07710' => 'spa', 'Sp4g27420' => 'spa', 'Sp5g02450' => 'spa', 'Sp6g01280' => 'spa', 'Sp6g38480' => 'spa', 'Sp7g20780' => 'spa', 'TAR374G1413' => 'tar', 'TAR623G1777' => 'tar', 'TAR629G2370' => 'tar', 'TAR633G1759' => 'tar', 'TAR636G3387' => 'tar', 'THA.LOC104802447' => 'tha', 'THA.LOC104813916' => 'tha', 'THA.LOC104816423' => 'tha', 'THA.LOC104817246' => 'tha', 'THA.LOC104825895' => 'tha', 'Thecc.01G335200' => 'tca', 'Thecc.01G377400' => 'tca', 'Thecc.03G262200' => 'tca', 'Thecc.05G036800' => 'tca', 'Thecc.10G080500' => 'tca', 'Thecc.10G080800' => 'tca', 'Thhalv10001560m.g' => 'esa', 'Thhalv10006120m.g' => 'esa', 'Thhalv10014375m.g' => 'esa', 'Thhalv10021264m.g' => 'esa', 'Thhalv10028856m.g' => 'esa', 'TPR.G1914' => 'tpr', 'TPR.G4757' => 'tpr', 'TPR.G5595' => 'tpr', 'TWI14G0952' => 'twi', 'TWI14G1307' => 'twi', 'TWI38G2143' => 'twi', 'TWI59G0826' => 'twi', 'TWI77G0527' => 'twi', 'TWI81G0150' => 'twi', 'unitig_21.g21018' => 'ugi', 'unitig_26.g9725' => 'ugi', 'unitig_744.g24653' => 'ugi', 'unitig_749.g13778' => 'ugi', 'unitig_899.g15035' => 'ugi', 'vmacro04296' => 'vma', 'vmacro04852' => 'vma', 'vmacro13404' => 'vma', 'vmacro20169' => 'vma', 'vmacro21014' => 'vma', 'VMungo0331G0237' => 'vmu', 'VMungo0331G0706' => 'vmu', 'VMungo0331G1361' => 'vmu', 'VMungo0331G1489' => 'vmu', 'VMungo0540G1037' => 'vmu', 'VMungo0720G2487' => 'vmu', 'VMungo0720G2721' => 'vmu', 'Zm00001eb086860' => 'zma', 'Zm00001eb104760' => 'zma', 'Zm00001eb148220' => 'zma', 'Zm00001eb259030' => 'zma', 'Zm00001eb289590' => 'zma', 'Zm00001eb420150' => 'zma' ) $gf_id = 'HOM05D000968' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000968' ) $data_identifier = 'HOM05D000968' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 19, 'bol' => (int) 9, 'bra' => (int) 12, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 5, 'ccan' => (int) 7, 'cde' => (int) 5, 'cfa' => (int) 8, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 4, 'dca' => (int) 5, 'din' => (int) 5, 'dzi' => (int) 12, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 25, 'fve' => (int) 5, 'gma' => (int) 9, 'ghi' => (int) 18, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 7, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 5, 'sun' => (int) 2, 'lal' => (int) 9, 'lja' => (int) 5, 'lonja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 9, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 2, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 3, 'stu' => (int) 6, 'pvu' => (int) 4, 'ptr' => (int) 8, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 3, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 1, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 5, 'sas' => (int) 5, 'shi' => (int) 6, 'smo' => (int) 6, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 3, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420150' $species_info = array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ) $local_species = 'cbr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000968', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p31690' => 'bna', 'A03p36040' => 'bna', 'A03p53730' => 'bna', 'A04p01410' => 'bna', 'A05p05420' => 'bna', 'A05p39630' => 'bna', 'A05p39640' => 'bna', 'A09p00970' => 'bna', 'A09p53060' => 'bna', 'A10p31890' => 'bna', 'Aa31LG10G15040' => 'aar', 'Aa31LG1G21090' => 'aar', 'Aa31LG1G26900' => 'aar', 'Aa31LG3G1820' => 'aar', 'Aa31LG5G1100' => 'aar', 'Aa31LG6G4740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2265' => 'aag', 'Actinidia07998' => 'ach', 'Actinidia11266' => 'ach', 'Actinidia12682' => 'ach', 'Actinidia26479' => 'ach', 'Actinidia31406' => 'ach', 'Actinidia32437' => 'ach', 'Actinidia38862' => 'ach', 'Ah.05g174230' => 'amhyb', 'Ah.05g179070' => 'amhyb', 'Ah.05g179090' => 'amhyb', 'Ah.12g059950' => 'amhyb', 'AL3G20480' => 'aly', 'AL4G44520' => 'aly', 'AL5G43110' => 'aly', 'AL6G13890' => 'aly', 'AL6G52620' => 'aly', 'AL7G30830' => 'aly', 'Aqoxy1G00899' => 'aox', 'Aqoxy5G04333' => 'aox', 'Aqoxy7G00641' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3IZ0NN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4EF6AW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W9P8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79GA3M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C43NQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFCU6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G95YVJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCHK29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LU1UG8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX91RN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGB4B1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8DA0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9H7JI' => 'arhy', 'AT3G09320' => 'ath', 'AT3G60800' => 'ath', 'AT4G00840' => 'ath', 'AT4G22750' => 'ath', 'AT5G04270' => 'ath', 'ATR0090G003' => 'atr', 'ATR0559G349' => 'atr', 'ATR0680G261' => 'atr', 'ATR0810G048' => 'atr', 'Atru.chr12.831' => 'acertr', 'Atru.chr5.303' => 'acertr', 'Atru.chr5.748' => 'acertr', 'Atru.chr8.1999' => 'acertr', 'Atru.chr9.1436' => 'acertr', 'AUR62004211' => 'cqu', 'AUR62004548' => 'cqu', 'AUR62013637' => 'cqu', 'AUR62022662' => 'cqu', 'AUR62025777' => 'cqu', 'AUR62042386' => 'cqu', 'BcaB01g02310' => 'bca', 'BcaB01g06062' => 'bca', 'BcaB02g08975' => 'bca', 'BcaB02g08980' => 'bca', 'BcaC01g04228' => 'bca', 'BcaC01g06830' => 'bca', 'BcaC02g10186' => 'bca', 'BcaC02g12214' => 'bca', 'BcaC04g24101' => 'bca', 'BcaC05g29520' => 'bca', 'BcaC05g29661' => 'bca', 'BcaC06g32130' => 'bca', 'BcaC06g32131' => 'bca', 'BcaC07g40601' => 'bca', 'BcaC07g42641' => 'bca', 'BcaNung01038' => 'bca', 'BcaNung01676' => 'bca', 'BcaNung02480' => 'bca', 'BcaNung07376' => 'bca', 'BolC3t16146H' => 'bol', 'BolC3t16637H' => 'bol', 'BolC4t22257H' => 'bol', 'BolC4t24728H' => 'bol', 'BolC5t34517H' => 'bol', 'BolC7t45703H' => 'bol', 'BolC8t51166H' => 'bol', 'BolC9t53038H' => 'bol', 'BolC9t60000H' => 'bol', 'BraA01t01345Z' => 'bra', 'BraA01t01346Z' => 'bra', 'BraA01t01348Z' => 'bra', 'BraA03t12347Z' => 'bra', 'BraA03t12775Z' => 'bra', 'BraA03t14439Z' => 'bra', 'BraA04t15860Z' => 'bra', 'BraA05t19511Z' => 'bra', 'BraA05t22746Z' => 'bra', 'BraA09t35767Z' => 'bra', 'BraA09t40732Z' => 'bra', 'BraA10t45233Z' => 'bra', 'C03p38720' => 'bna', 'C03p43680' => 'bna', 'C04p06350' => 'bna', 'C04p31800' => 'bna', 'C05p58680' => 'bna', 'C07p52110' => 'bna', 'C08p35760' => 'bna', 'C09p01050' => 'bna', 'C09p72600' => 'bna', 'CAN.G106.2' => 'can', 'CAN.G1482.1' => 'can', 'CAN.G324.12' => 'can', 'CAN.G388.20' => 'can', 'CAN.G412.7' => 'can', 'CAN.G694.32' => 'can', 'CAN.G92.12' => 'can', 'CANSAT11G2353' => 'cansat', 'CANSAT21G1398' => 'cansat', 'CANSAT56G2456' => 'cansat', 'CANSAT56G3031' => 'cansat', 'CANSAT56G4539' => 'cansat', 'CARHR083680' => 'chi', 'CARHR171190' => 'chi', 'CARHR209010' => 'chi', 'CARHR229680' => 'chi', 'CARHR249490' => 'chi', 'Carub.0003s0844' => 'cru', 'Carub.0005s2755' => 'cru', 'Carub.0006s0322' => 'cru', 'Carub.0006s3586' => 'cru', 'Carub.0007s1855' => 'cru', 'Ca_07808_v3' => 'car', 'Ca_09535_v3' => 'car', 'Ca_10548_v3' => 'car', 'Ca_19913_v3' => 'car', 'Ca_19916_v3' => 'car', 'Ca_19975_v3' => 'car', 'CBR_g22876' => 'cbr', 'CBR_g22879' => 'cbr', 'CBR_g38491' => 'cbr', 'CBR_g54185' => 'cbr', 'CBR_g54190' => 'cbr', 'Cc02_g11020' => 'ccan', 'Cc02_g23920' => 'ccan', 'Cc02_g39860' => 'ccan', 'Cc02_g39870' => 'ccan', 'Cc03_g06760' => 'ccan', 'Cc06_g02450' => 'ccan', 'Cc09_g09450' => 'ccan', 'CDE02G1959' => 'cde', 'CDE04G0600' => 'cde', 'CDE07G1996' => 'cde', 'CDE07G2078' => 'cde', 'CDE11G0611' => 'cde', 'Cfa001683' => 'cfa', 'Cfa001734' => 'cfa', 'Cfa001737' => 'cfa', 'Cfa003751' => 'cfa', 'Cfa012019' => 'cfa', 'Cfa017353' => 'cfa', 'Cfa017732' => 'cfa', 'Cfa022464' => 'cfa', 'Ciclev10012400m.g' => 'ccl', 'Ciclev10021242m.g' => 'ccl', 'Ciclev10021302m.g' => 'ccl', 'Ciclev10021463m.g' => 'ccl', 'Ciclev10032359m.g' => 'ccl', 'CiPaw.01G081000' => 'cil', 'CiPaw.01G262500' => 'cil', 'CiPaw.01G269800' => 'cil', 'CiPaw.02G168400' => 'cil', 'CiPaw.05G119500' => 'cil', 'CiPaw.11G147300' => 'cil', 'ClCG01G003630' => 'cla', 'ClCG05G000510' => 'cla', 'ClCG05G002300' => 'cla', 'ClCG08G007650' => 'cla', 'ClCG10G021250' => 'cla', 'COL.COLO4_06218' => 'col', 'COL.COLO4_12538' => 'col', 'COL.COLO4_14775' => 'col', 'COL.COLO4_23875' => 'col', 'Cpa.g.sc141.16' => 'cpa', 'Cpa.g.sc169.16' => 'cpa', 'Cpa.g.sc244.4' => 'cpa', 'Cpa.g.sc244.5' => 'cpa', 'Cpa.g.sc29.87' => 'cpa', 'Cpa.g.sc53.115' => 'cpa', 'Cre03.g207502' => 'cre', 'Cre06.g277000' => 'cre', 'Cre09.g394050' => 'cre', 'CsaV3_3G007680' => 'csa', 'CsaV3_3G009710' => 'csa', 'CsaV3_3G034790' => 'csa', 'CsaV3_5G003750' => 'csa', 'CsaV3_6G036620' => 'csa', 'CSS0002288' => 'camsi', 'CSS0011250' => 'camsi', 'CSS0021619' => 'camsi', 'CSS0046701' => 'camsi', 'DCAR_006420' => 'dca', 'DCAR_006865' => 'dca', 'DCAR_008558' => 'dca', 'DCAR_028754' => 'dca', 'DCAR_028755' => 'dca', 'Dinv31218' => 'din', 'Dinv32371' => 'din', 'Dinv34250' => 'din', 'Dinv37156' => 'din', 'Dinv43704' => 'din', 'Duzib093G1811' => 'dzi', 'Duzib106G1622' => 'dzi', 'Duzib114G0504' => 'dzi', 'Duzib128G0338' => 'dzi', 'Duzib128G1577' => 'dzi', 'Duzib133G0104' => 'dzi', 'Duzib133G1080' => 'dzi', 'Duzib138G0324' => 'dzi', 'Duzib138G0394' => 'dzi', 'Duzib205G0122' => 'dzi', 'Duzib268G1020' => 'dzi', 'Duzib268G1359' => 'dzi', 'ECA232G3929' => 'eca', 'ECA236G2210' => 'eca', 'ECA236G2287' => 'eca', 'ECA240G4568' => 'eca', 'ECA247G0894' => 'eca', 'EL10Ac1g00200' => 'bvu', 'EL10Ac1g00886' => 'bvu', 'EL10As1g23091' => 'bvu', 'EL10As1g23092' => 'bvu', 'Eucgr.A01284' => 'egr', 'Eucgr.A01285' => 'egr', 'Eucgr.D02456' => 'egr', 'Eucgr.E00018' => 'egr', 'Eucgr.E01439' => 'egr', 'Eucgr.G02859' => 'egr', 'FAN01G0168' => 'fan', 'FAN01G0453' => 'fan', 'FAN01G2761' => 'fan', 'FAN02G1239' => 'fan', 'FAN03G0645' => 'fan', 'FAN03G2707' => 'fan', 'FAN03G2978' => 'fan', 'FAN04G0227' => 'fan', 'FAN06G0091' => 'fan', 'FAN06G1418' => 'fan', 'FAN06G1512' => 'fan', 'FAN06G1986' => 'fan', 'FAN06G2905' => 'fan', 'FAN06G4325' => 'fan', 'FAN08G0033' => 'fan', 'FAN09G0642' => 'fan', 'FAN10G1763' => 'fan', 'FAN10G2026' => 'fan', 'FAN10G2513' => 'fan', 'FAN10G3402' => 'fan', 'FAN10G3564' => 'fan', 'FAN10G3987' => 'fan', 'FAN13G1490' => 'fan', 'FAN14G5857' => 'fan', 'FAN18G1188' => 'fan', 'FvH4_5g00750' => 'fve', 'FvH4_6g13410' => 'fve', 'FvH4_7g11740' => 'fve', 'FvH4_7g17410' => 'fve', 'FvH4_7g18860' => 'fve', 'Glyma.01G099100' => 'gma', 'Glyma.01G142300' => 'gma', 'Glyma.03G025500' => 'gma', 'Glyma.03G069700' => 'gma', 'Glyma.03G260000' => 'gma', 'Glyma.09G269800' => 'gma', 'Glyma.10G208700' => 'gma', 'Glyma.18G220400' => 'gma', 'Glyma.20G182000' => 'gma', 'Gohir.A01G221726' => 'ghi', 'Gohir.A07G134600' => 'ghi', 'Gohir.A07G146000' => 'ghi', 'Gohir.A08G173900' => 'ghi', 'Gohir.A09G194900' => 'ghi', 'Gohir.A10G204100' => 'ghi', 'Gohir.A11G080600' => 'ghi', 'Gohir.A11G327500' => 'ghi', 'Gohir.A12G101800' => 'ghi', 'Gohir.D01G211200' => 'ghi', 'Gohir.D07G139200' => 'ghi', 'Gohir.D07G152100' => 'ghi', 'Gohir.D08G192600' => 'ghi', 'Gohir.D09G189200' => 'ghi', 'Gohir.D10G212000' => 'ghi', 'Gohir.D11G085200' => 'ghi', 'Gohir.D11G346400' => 'ghi', 'Gohir.D12G104800' => 'ghi', 'Gorai.001G151300' => 'gra', 'Gorai.001G174100' => 'gra', 'Gorai.002G257000' => 'gra', 'Gorai.004G202600' => 'gra', 'Gorai.007G090900' => 'gra', 'Gorai.007G376700' => 'gra', 'Gorai.008G114100' => 'gra', 'Gorai.011G237900' => 'gra', 'GSVIVG01005450001' => 'vvi', 'GSVIVG01016232001' => 'vvi', 'GSVIVG01026157001' => 'vvi', 'GSVIVG01027419001' => 'vvi', 'GSVIVG01027631001' => 'vvi', 'GSVIVG01034143001' => 'vvi', 'HanXRQChr03g0093921' => 'han', 'HanXRQChr04g0120001' => 'han', 'HanXRQChr04g0122561' => 'han', 'HanXRQChr09g0246851' => 'han', 'HanXRQChr10g0293311' => 'han', 'HanXRQChr13g0425231' => 'han', 'HanXRQChr16g0532571' => 'han', 'Haze_09050' => 'cav', 'Haze_15715' => 'cav', 'Haze_15716' => 'cav', 'Haze_16803' => 'cav', 'Haze_16850' => 'cav', 'Hma1.2p1_0301F.1_g118655' => 'hma', 'Hma1.2p1_0309F.1_g120590' => 'hma', 'Hma1.2p1_0936F.1_g238900' => 'hma', 'Hma1.2p1_3552F.1_g336740' => 'hma', 'HPP92_003520' => 'vpl', 'HPP92_006628' => 'vpl', 'HPP92_006645' => 'vpl', 'HPP92_014669' => 'vpl', 'HPP92_015077' => 'vpl', 'Hund16742' => 'sun', 'Hund17022' => 'sun', 'Lalb_Chr02g0152131' => 'lal', 'Lalb_Chr05g0225371' => 'lal', 'Lalb_Chr07g0189841' => 'lal', 'Lalb_Chr07g0192961' => 'lal', 'Lalb_Chr12g0208221' => 'lal', 'Lalb_Chr13g0291211' => 'lal', 'Lalb_Chr13g0291781' => 'lal', 'Lalb_Chr18g0044651' => 'lal', 'Lalb_Chr21g0313731' => 'lal', 'Lj1g0022533' => 'lja', 'Lj2A18T50' => 'lonja', 'Lj2A92G93' => 'lonja', 'Lj3A965T73' => 'lonja', 'Lj3g0000673' => 'lja', 'Lj3g0002666' => 'lja', 'Lj4g0016985' => 'lja', 'Lj5g0003625' => 'lja', 'Lj7A529G36' => 'lonja', 'Lj9A569T49' => 'lonja', 'Lj9A604T63' => 'lonja', 'Lsat_1_v5_gn_3_132060' => 'lsa', 'Lsat_1_v5_gn_4_68941' => 'lsa', 'Lsat_1_v5_gn_5_95580' => 'lsa', 'Lsat_1_v5_gn_7_161' => 'lsa', 'Lsat_1_v5_gn_7_7041' => 'lsa', 'Lsat_1_v5_gn_9_33481' => 'lsa', 'Lsat_1_v5_gn_9_68260' => 'lsa', 'Manes.01G073100' => 'mes', 'Manes.01G266300' => 'mes', 'Manes.02G033300' => 'mes', 'Manes.05G017900' => 'mes', 'Manes.05G046100' => 'mes', 'Manes.08G080900' => 'mes', 'Manes.10G049400' => 'mes', 'Mapoly0009s0186' => 'mpo', 'Mapoly0036s0118' => 'mpo', 'Mapoly0101s0046' => 'mpo', 'MBI04_g30218_MAGBIO' => 'mbi', 'MBI04_g35564_MAGBIO' => 'mbi', 'MBI12_g34011_MAGBIO' => 'mbi', 'MBI14_g04655_MAGBIO' => 'mbi', 'MCO07G653' => 'mco', 'MCO10G173' => 'mco', 'MD01G1087100' => 'mdo', 'MD01G1104200' => 'mdo', 'MD02G1205100' => 'mdo', 'MD04G1079200' => 'mdo', 'MD04G1131400' => 'mdo', 'MD07G1121600' => 'mdo', 'MD07G1157300' => 'mdo', 'MD07G1171000' => 'mdo', 'MD12G1144500' => 'mdo', 'Medtr1g094610' => 'mtr', 'Medtr4g021795' => 'mtr', 'Medtr4g023760' => 'mtr', 'Medtr7g118050' => 'mtr', 'MELO3C005582.2' => 'cme', 'MELO3C005989.2' => 'cme', 'MELO3C006192.2' => 'cme', 'MELO3C009248.2' => 'cme', 'MELO3C019817.2' => 'cme', 'Migut.B01625' => 'egut', 'Migut.B01915' => 'egut', 'Migut.F01721' => 'egut', 'Migut.J00314' => 'egut', 'MSTRG.20742' => 'ama', 'MSTRG.8134' => 'ama', 'Nitab4.5_0000096g0010' => 'nta', 'Nitab4.5_0000202g0030' => 'nta', 'Nitab4.5_0000216g0370' => 'nta', 'Nitab4.5_0000457g0230' => 'nta', 'Nitab4.5_0001702g0170' => 'nta', 'Nitab4.5_0003607g0010' => 'nta', 'Nitab4.5_0004917g0020' => 'nta', 'Nitab4.5_0007059g0010' => 'nta', 'Nitab4.5_0007184g0010' => 'nta', 'Nitab4.5_0007346g0020' => 'nta', 'Nn1g00410' => 'nnu', 'Nn1g01252' => 'nnu', 'Nn2g11168' => 'nnu', 'Nn2g13403' => 'nnu', 'Nn2g13760' => 'nnu', 'Nn4g26380' => 'nnu', 'Oeu000806.2' => 'oeu', 'Oeu005788.1' => 'oeu', 'Oeu006900.3' => 'oeu', 'Oeu007797.1' => 'oeu', 'Oeu011932.1' => 'oeu', 'Oeu022739.1' => 'oeu', 'Oeu037918.1' => 'oeu', 'Oeu055490.2' => 'oeu', 'Os01g0844400' => 'osa', 'Os02g0819100' => 'osa', 'Os03g0804300' => 'osa', 'Os05g0458000' => 'osa', 'Os07g0467800' => 'osa', 'Os12g0602200' => 'osa', 'Peaxi162Scf00013g03444' => 'pax', 'Peaxi162Scf00094g01120' => 'pax', 'Peaxi162Scf00191g01211' => 'pax', 'Peaxi162Scf00238g01110' => 'pax', 'Peaxi162Scf00330g00719' => 'pax', 'Peaxi162Scf00627g00018' => 'pax', 'PGR031G2686' => 'pgr', 'PGR042G0809' => 'pgr', 'PGR142G0193' => 'pgr', 'PGSC0003DMG400011066' => 'stu', 'PGSC0003DMG400012041' => 'stu', 'PGSC0003DMG400013678' => 'stu', 'PGSC0003DMG400023477' => 'stu', 'PGSC0003DMG400025956' => 'stu', 'PGSC0003DMG401019151' => 'stu', 'Phvul.006G116400' => 'pvu', 'Phvul.007G097300' => 'pvu', 'Phvul.010G015000' => 'pvu', 'Phvul.010G083900' => 'pvu', 'Potri.001G117100' => 'ptr', 'Potri.002G147300' => 'ptr', 'Potri.003G115600' => 'ptr', 'Potri.006G087400' => 'ptr', 'Potri.010G226100' => 'ptr', 'Potri.014G069200' => 'ptr', 'Potri.014G104000' => 'ptr', 'Potri.016G100200' => 'ptr', 'Pp3c10_20450' => 'ppa', 'Pp3c1_42400' => 'ppa', 'Pp3c3_24390' => 'ppa', 'Pp3c3_2860' => 'ppa', 'PRCOL_00003193' => 'pco', 'Prupe.2G144500' => 'ppe', 'Prupe.2G195700' => 'ppe', 'Prupe.2G209800' => 'ppe', 'Prupe.5G080000' => 'ppe', 'Prupe.6G257900' => 'ppe', 'Psat3g001160' => 'psa', 'Psat6g181880' => 'psa', 'Psat7g233720' => 'psa', 'PSO063G7587' => 'pso', 'PSO339G2145' => 'pso', 'PSO339G3369' => 'pso', 'PSO478G2747' => 'pso', 'PSO513G0140' => 'pso', 'PSO782G1614' => 'pso', 'PSO782G4889' => 'pso', 'PSO782G5485' => 'pso', 'PSO801G0241' => 'pso', 'QL07p048854' => 'qlo', 'QL08p046745' => 'qlo', 'QL08p052606' => 'qlo', 'QL08p053414' => 'qlo', 'QL08p054868' => 'qlo', 'RcHm_v2.0_Chr1g0350251' => 'rch', 'RcHm_v2.0_Chr1g0360851' => 'rch', 'RcHm_v2.0_Chr1g0362791' => 'rch', 'RcHm_v2.0_Chr3g0466281' => 'rch', 'RcHm_v2.0_Chr7g0201481' => 'rch', 'Rhsim01G0148600' => 'rsi', 'Rhsim05G0194400' => 'rsi', 'Rhsim07G0000700' => 'rsi', 'Rhsim07G0000800' => 'rsi', 'Rhsim07G0027900' => 'rsi', 'Rhsim09G0149500' => 'rsi', 'RhsimUnG0186900' => 'rsi', 'Sabra01G0089900' => 'sbr', 'Sabra02G0114700' => 'sbr', 'Sabra02G0116300' => 'sbr', 'Sabra03G0080100' => 'sbr', 'Sabra08G0024300' => 'sbr', 'Sabra10G0174300' => 'sbr', 'Sabra14G0048900' => 'sbr', 'Sabra14G0076500' => 'sbr', 'SalBow5G2513' => 'sbo', 'Sc01g0002300' => 'sci', 'Sc01g0004450' => 'sci', 'Sc06g0001680' => 'sci', 'Sc23g0003580' => 'sci', 'Sed0000913' => 'sed', 'Sed0001655' => 'sed', 'Sed0007745' => 'sed', 'Sed0010951' => 'sed', 'Sed0017599' => 'sed', 'Sed0021405' => 'sed', 'Sed0022810' => 'sed', 'SEGI_07099' => 'sgi', 'SEGI_11931' => 'sgi', 'SEGI_13187' => 'sgi', 'SEGI_29958' => 'sgi', 'SEGI_36351' => 'sgi', 'SGA_v2.0_scaffold126G33770' => 'sas', 'SGA_v2.0_scaffold153G37003' => 'sas', 'SGA_v2.0_scaffold2G01359' => 'sas', 'SGA_v2.0_scaffold5G03064' => 'sas', 'SGA_v2.0_scaffold95G28903' => 'sas', 'SHI12701' => 'shi', 'SHI26410' => 'shi', 'SHI38997' => 'shi', 'SHI53759' => 'shi', 'SHI53886' => 'shi', 'SHI54714' => 'shi', 'SMO011G0041' => 'smo', 'SMO146G0251' => 'smo', 'SMO160G0004' => 'smo', 'SMO174G0057' => 'smo', 'SMO244G0089' => 'smo', 'SMO296G0011' => 'smo', 'Solyc01g091280.3' => 'sly', 'Solyc05g047610.3' => 'sly', 'Solyc05g047640.3' => 'sly', 'Solyc05g055630.3' => 'sly', 'Solyc10g018160.2' => 'sly', 'Solyc10g084820.2' => 'sly', 'Solyc10g086565.2' => 'sly', 'Sopen01g037030' => 'spe', 'Sopen05g027920' => 'spe', 'Sopen05g034070' => 'spe', 'Sopen10g007260' => 'spe', 'Sopen10g034260' => 'spe', 'Sopen10g035950' => 'spe', 'Sp3g07710' => 'spa', 'Sp4g27420' => 'spa', 'Sp5g02450' => 'spa', 'Sp6g01280' => 'spa', 'Sp6g38480' => 'spa', 'Sp7g20780' => 'spa', 'TAR374G1413' => 'tar', 'TAR623G1777' => 'tar', 'TAR629G2370' => 'tar', 'TAR633G1759' => 'tar', 'TAR636G3387' => 'tar', 'THA.LOC104802447' => 'tha', 'THA.LOC104813916' => 'tha', 'THA.LOC104816423' => 'tha', 'THA.LOC104817246' => 'tha', 'THA.LOC104825895' => 'tha', 'Thecc.01G335200' => 'tca', 'Thecc.01G377400' => 'tca', 'Thecc.03G262200' => 'tca', 'Thecc.05G036800' => 'tca', 'Thecc.10G080500' => 'tca', 'Thecc.10G080800' => 'tca', 'Thhalv10001560m.g' => 'esa', 'Thhalv10006120m.g' => 'esa', 'Thhalv10014375m.g' => 'esa', 'Thhalv10021264m.g' => 'esa', 'Thhalv10028856m.g' => 'esa', 'TPR.G1914' => 'tpr', 'TPR.G4757' => 'tpr', 'TPR.G5595' => 'tpr', 'TWI14G0952' => 'twi', 'TWI14G1307' => 'twi', 'TWI38G2143' => 'twi', 'TWI59G0826' => 'twi', 'TWI77G0527' => 'twi', 'TWI81G0150' => 'twi', 'unitig_21.g21018' => 'ugi', 'unitig_26.g9725' => 'ugi', 'unitig_744.g24653' => 'ugi', 'unitig_749.g13778' => 'ugi', 'unitig_899.g15035' => 'ugi', 'vmacro04296' => 'vma', 'vmacro04852' => 'vma', 'vmacro13404' => 'vma', 'vmacro20169' => 'vma', 'vmacro21014' => 'vma', 'VMungo0331G0237' => 'vmu', 'VMungo0331G0706' => 'vmu', 'VMungo0331G1361' => 'vmu', 'VMungo0331G1489' => 'vmu', 'VMungo0540G1037' => 'vmu', 'VMungo0720G2487' => 'vmu', 'VMungo0720G2721' => 'vmu', 'Zm00001eb086860' => 'zma', 'Zm00001eb104760' => 'zma', 'Zm00001eb148220' => 'zma', 'Zm00001eb259030' => 'zma', 'Zm00001eb289590' => 'zma', 'Zm00001eb420150' => 'zma' ), 'gf_id' => 'HOM05D000968', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000968' ), 'data_identifier' => 'HOM05D000968', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000968', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p31690' => 'bna', 'A03p36040' => 'bna', 'A03p53730' => 'bna', 'A04p01410' => 'bna', 'A05p05420' => 'bna', 'A05p39630' => 'bna', 'A05p39640' => 'bna', 'A09p00970' => 'bna', 'A09p53060' => 'bna', 'A10p31890' => 'bna', 'Aa31LG10G15040' => 'aar', 'Aa31LG1G21090' => 'aar', 'Aa31LG1G26900' => 'aar', 'Aa31LG3G1820' => 'aar', 'Aa31LG5G1100' => 'aar', 'Aa31LG6G4740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2265' => 'aag', 'Actinidia07998' => 'ach', 'Actinidia11266' => 'ach', 'Actinidia12682' => 'ach', 'Actinidia26479' => 'ach', 'Actinidia31406' => 'ach', 'Actinidia32437' => 'ach', 'Actinidia38862' => 'ach', 'Ah.05g174230' => 'amhyb', 'Ah.05g179070' => 'amhyb', 'Ah.05g179090' => 'amhyb', 'Ah.12g059950' => 'amhyb', 'AL3G20480' => 'aly', 'AL4G44520' => 'aly', 'AL5G43110' => 'aly', 'AL6G13890' => 'aly', 'AL6G52620' => 'aly', 'AL7G30830' => 'aly', 'Aqoxy1G00899' => 'aox', 'Aqoxy5G04333' => 'aox', 'Aqoxy7G00641' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3IZ0NN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4EF6AW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W9P8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79GA3M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C43NQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFCU6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G95YVJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCHK29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LU1UG8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX91RN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGB4B1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8DA0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9H7JI' => 'arhy', 'AT3G09320' => 'ath', 'AT3G60800' => 'ath', 'AT4G00840' => 'ath', 'AT4G22750' => 'ath', 'AT5G04270' => 'ath', 'ATR0090G003' => 'atr', 'ATR0559G349' => 'atr', 'ATR0680G261' => 'atr', 'ATR0810G048' => 'atr', 'Atru.chr12.831' => 'acertr', 'Atru.chr5.303' => 'acertr', 'Atru.chr5.748' => 'acertr', 'Atru.chr8.1999' => 'acertr', 'Atru.chr9.1436' => 'acertr', 'AUR62004211' => 'cqu', 'AUR62004548' => 'cqu', 'AUR62013637' => 'cqu', 'AUR62022662' => 'cqu', 'AUR62025777' => 'cqu', 'AUR62042386' => 'cqu', 'BcaB01g02310' => 'bca', 'BcaB01g06062' => 'bca', 'BcaB02g08975' => 'bca', 'BcaB02g08980' => 'bca', 'BcaC01g04228' => 'bca', 'BcaC01g06830' => 'bca', 'BcaC02g10186' => 'bca', 'BcaC02g12214' => 'bca', 'BcaC04g24101' => 'bca', 'BcaC05g29520' => 'bca', 'BcaC05g29661' => 'bca', 'BcaC06g32130' => 'bca', 'BcaC06g32131' => 'bca', 'BcaC07g40601' => 'bca', 'BcaC07g42641' => 'bca', 'BcaNung01038' => 'bca', 'BcaNung01676' => 'bca', 'BcaNung02480' => 'bca', 'BcaNung07376' => 'bca', 'BolC3t16146H' => 'bol', 'BolC3t16637H' => 'bol', 'BolC4t22257H' => 'bol', 'BolC4t24728H' => 'bol', 'BolC5t34517H' => 'bol', 'BolC7t45703H' => 'bol', 'BolC8t51166H' => 'bol', 'BolC9t53038H' => 'bol', 'BolC9t60000H' => 'bol', 'BraA01t01345Z' => 'bra', 'BraA01t01346Z' => 'bra', 'BraA01t01348Z' => 'bra', 'BraA03t12347Z' => 'bra', 'BraA03t12775Z' => 'bra', 'BraA03t14439Z' => 'bra', 'BraA04t15860Z' => 'bra', 'BraA05t19511Z' => 'bra', 'BraA05t22746Z' => 'bra', 'BraA09t35767Z' => 'bra', 'BraA09t40732Z' => 'bra', 'BraA10t45233Z' => 'bra', 'C03p38720' => 'bna', 'C03p43680' => 'bna', 'C04p06350' => 'bna', 'C04p31800' => 'bna', 'C05p58680' => 'bna', 'C07p52110' => 'bna', 'C08p35760' => 'bna', 'C09p01050' => 'bna', 'C09p72600' => 'bna', 'CAN.G106.2' => 'can', 'CAN.G1482.1' => 'can', 'CAN.G324.12' => 'can', 'CAN.G388.20' => 'can', 'CAN.G412.7' => 'can', 'CAN.G694.32' => 'can', 'CAN.G92.12' => 'can', 'CANSAT11G2353' => 'cansat', 'CANSAT21G1398' => 'cansat', 'CANSAT56G2456' => 'cansat', 'CANSAT56G3031' => 'cansat', 'CANSAT56G4539' => 'cansat', 'CARHR083680' => 'chi', 'CARHR171190' => 'chi', 'CARHR209010' => 'chi', 'CARHR229680' => 'chi', 'CARHR249490' => 'chi', 'Carub.0003s0844' => 'cru', 'Carub.0005s2755' => 'cru', 'Carub.0006s0322' => 'cru', 'Carub.0006s3586' => 'cru', 'Carub.0007s1855' => 'cru', 'Ca_07808_v3' => 'car', 'Ca_09535_v3' => 'car', 'Ca_10548_v3' => 'car', 'Ca_19913_v3' => 'car', 'Ca_19916_v3' => 'car', 'Ca_19975_v3' => 'car', 'CBR_g22876' => 'cbr', 'CBR_g22879' => 'cbr', 'CBR_g38491' => 'cbr', 'CBR_g54185' => 'cbr', 'CBR_g54190' => 'cbr', 'Cc02_g11020' => 'ccan', 'Cc02_g23920' => 'ccan', 'Cc02_g39860' => 'ccan', 'Cc02_g39870' => 'ccan', 'Cc03_g06760' => 'ccan', 'Cc06_g02450' => 'ccan', 'Cc09_g09450' => 'ccan', 'CDE02G1959' => 'cde', 'CDE04G0600' => 'cde', 'CDE07G1996' => 'cde', 'CDE07G2078' => 'cde', 'CDE11G0611' => 'cde', 'Cfa001683' => 'cfa', 'Cfa001734' => 'cfa', 'Cfa001737' => 'cfa', 'Cfa003751' => 'cfa', 'Cfa012019' => 'cfa', 'Cfa017353' => 'cfa', 'Cfa017732' => 'cfa', 'Cfa022464' => 'cfa', 'Ciclev10012400m.g' => 'ccl', 'Ciclev10021242m.g' => 'ccl', 'Ciclev10021302m.g' => 'ccl', 'Ciclev10021463m.g' => 'ccl', 'Ciclev10032359m.g' => 'ccl', 'CiPaw.01G081000' => 'cil', 'CiPaw.01G262500' => 'cil', 'CiPaw.01G269800' => 'cil', 'CiPaw.02G168400' => 'cil', 'CiPaw.05G119500' => 'cil', 'CiPaw.11G147300' => 'cil', 'ClCG01G003630' => 'cla', 'ClCG05G000510' => 'cla', 'ClCG05G002300' => 'cla', 'ClCG08G007650' => 'cla', 'ClCG10G021250' => 'cla', 'COL.COLO4_06218' => 'col', 'COL.COLO4_12538' => 'col', 'COL.COLO4_14775' => 'col', 'COL.COLO4_23875' => 'col', 'Cpa.g.sc141.16' => 'cpa', 'Cpa.g.sc169.16' => 'cpa', 'Cpa.g.sc244.4' => 'cpa', 'Cpa.g.sc244.5' => 'cpa', 'Cpa.g.sc29.87' => 'cpa', 'Cpa.g.sc53.115' => 'cpa', 'Cre03.g207502' => 'cre', 'Cre06.g277000' => 'cre', 'Cre09.g394050' => 'cre', 'CsaV3_3G007680' => 'csa', 'CsaV3_3G009710' => 'csa', 'CsaV3_3G034790' => 'csa', 'CsaV3_5G003750' => 'csa', 'CsaV3_6G036620' => 'csa', 'CSS0002288' => 'camsi', 'CSS0011250' => 'camsi', 'CSS0021619' => 'camsi', 'CSS0046701' => 'camsi', 'DCAR_006420' => 'dca', 'DCAR_006865' => 'dca', 'DCAR_008558' => 'dca', 'DCAR_028754' => 'dca', 'DCAR_028755' => 'dca', 'Dinv31218' => 'din', 'Dinv32371' => 'din', 'Dinv34250' => 'din', 'Dinv37156' => 'din', 'Dinv43704' => 'din', 'Duzib093G1811' => 'dzi', 'Duzib106G1622' => 'dzi', 'Duzib114G0504' => 'dzi', 'Duzib128G0338' => 'dzi', 'Duzib128G1577' => 'dzi', 'Duzib133G0104' => 'dzi', 'Duzib133G1080' => 'dzi', 'Duzib138G0324' => 'dzi', 'Duzib138G0394' => 'dzi', 'Duzib205G0122' => 'dzi', 'Duzib268G1020' => 'dzi', 'Duzib268G1359' => 'dzi', 'ECA232G3929' => 'eca', 'ECA236G2210' => 'eca', 'ECA236G2287' => 'eca', 'ECA240G4568' => 'eca', 'ECA247G0894' => 'eca', 'EL10Ac1g00200' => 'bvu', 'EL10Ac1g00886' => 'bvu', 'EL10As1g23091' => 'bvu', 'EL10As1g23092' => 'bvu', 'Eucgr.A01284' => 'egr', 'Eucgr.A01285' => 'egr', 'Eucgr.D02456' => 'egr', 'Eucgr.E00018' => 'egr', 'Eucgr.E01439' => 'egr', 'Eucgr.G02859' => 'egr', 'FAN01G0168' => 'fan', 'FAN01G0453' => 'fan', 'FAN01G2761' => 'fan', 'FAN02G1239' => 'fan', 'FAN03G0645' => 'fan', 'FAN03G2707' => 'fan', 'FAN03G2978' => 'fan', 'FAN04G0227' => 'fan', 'FAN06G0091' => 'fan', 'FAN06G1418' => 'fan', 'FAN06G1512' => 'fan', 'FAN06G1986' => 'fan', 'FAN06G2905' => 'fan', 'FAN06G4325' => 'fan', 'FAN08G0033' => 'fan', 'FAN09G0642' => 'fan', 'FAN10G1763' => 'fan', 'FAN10G2026' => 'fan', 'FAN10G2513' => 'fan', 'FAN10G3402' => 'fan', 'FAN10G3564' => 'fan', 'FAN10G3987' => 'fan', 'FAN13G1490' => 'fan', 'FAN14G5857' => 'fan', 'FAN18G1188' => 'fan', 'FvH4_5g00750' => 'fve', 'FvH4_6g13410' => 'fve', 'FvH4_7g11740' => 'fve', 'FvH4_7g17410' => 'fve', 'FvH4_7g18860' => 'fve', 'Glyma.01G099100' => 'gma', 'Glyma.01G142300' => 'gma', 'Glyma.03G025500' => 'gma', 'Glyma.03G069700' => 'gma', 'Glyma.03G260000' => 'gma', 'Glyma.09G269800' => 'gma', 'Glyma.10G208700' => 'gma', 'Glyma.18G220400' => 'gma', 'Glyma.20G182000' => 'gma', 'Gohir.A01G221726' => 'ghi', 'Gohir.A07G134600' => 'ghi', 'Gohir.A07G146000' => 'ghi', 'Gohir.A08G173900' => 'ghi', 'Gohir.A09G194900' => 'ghi', 'Gohir.A10G204100' => 'ghi', 'Gohir.A11G080600' => 'ghi', 'Gohir.A11G327500' => 'ghi', 'Gohir.A12G101800' => 'ghi', 'Gohir.D01G211200' => 'ghi', 'Gohir.D07G139200' => 'ghi', 'Gohir.D07G152100' => 'ghi', 'Gohir.D08G192600' => 'ghi', 'Gohir.D09G189200' => 'ghi', 'Gohir.D10G212000' => 'ghi', 'Gohir.D11G085200' => 'ghi', 'Gohir.D11G346400' => 'ghi', 'Gohir.D12G104800' => 'ghi', 'Gorai.001G151300' => 'gra', 'Gorai.001G174100' => 'gra', 'Gorai.002G257000' => 'gra', 'Gorai.004G202600' => 'gra', 'Gorai.007G090900' => 'gra', 'Gorai.007G376700' => 'gra', 'Gorai.008G114100' => 'gra', 'Gorai.011G237900' => 'gra', 'GSVIVG01005450001' => 'vvi', 'GSVIVG01016232001' => 'vvi', 'GSVIVG01026157001' => 'vvi', 'GSVIVG01027419001' => 'vvi', 'GSVIVG01027631001' => 'vvi', 'GSVIVG01034143001' => 'vvi', 'HanXRQChr03g0093921' => 'han', 'HanXRQChr04g0120001' => 'han', 'HanXRQChr04g0122561' => 'han', 'HanXRQChr09g0246851' => 'han', 'HanXRQChr10g0293311' => 'han', 'HanXRQChr13g0425231' => 'han', 'HanXRQChr16g0532571' => 'han', 'Haze_09050' => 'cav', 'Haze_15715' => 'cav', 'Haze_15716' => 'cav', 'Haze_16803' => 'cav', 'Haze_16850' => 'cav', 'Hma1.2p1_0301F.1_g118655' => 'hma', 'Hma1.2p1_0309F.1_g120590' => 'hma', 'Hma1.2p1_0936F.1_g238900' => 'hma', 'Hma1.2p1_3552F.1_g336740' => 'hma', 'HPP92_003520' => 'vpl', 'HPP92_006628' => 'vpl', 'HPP92_006645' => 'vpl', 'HPP92_014669' => 'vpl', 'HPP92_015077' => 'vpl', 'Hund16742' => 'sun', 'Hund17022' => 'sun', 'Lalb_Chr02g0152131' => 'lal', 'Lalb_Chr05g0225371' => 'lal', 'Lalb_Chr07g0189841' => 'lal', 'Lalb_Chr07g0192961' => 'lal', 'Lalb_Chr12g0208221' => 'lal', 'Lalb_Chr13g0291211' => 'lal', 'Lalb_Chr13g0291781' => 'lal', 'Lalb_Chr18g0044651' => 'lal', 'Lalb_Chr21g0313731' => 'lal', 'Lj1g0022533' => 'lja', 'Lj2A18T50' => 'lonja', 'Lj2A92G93' => 'lonja', 'Lj3A965T73' => 'lonja', 'Lj3g0000673' => 'lja', 'Lj3g0002666' => 'lja', 'Lj4g0016985' => 'lja', 'Lj5g0003625' => 'lja', 'Lj7A529G36' => 'lonja', 'Lj9A569T49' => 'lonja', 'Lj9A604T63' => 'lonja', 'Lsat_1_v5_gn_3_132060' => 'lsa', 'Lsat_1_v5_gn_4_68941' => 'lsa', 'Lsat_1_v5_gn_5_95580' => 'lsa', 'Lsat_1_v5_gn_7_161' => 'lsa', 'Lsat_1_v5_gn_7_7041' => 'lsa', 'Lsat_1_v5_gn_9_33481' => 'lsa', 'Lsat_1_v5_gn_9_68260' => 'lsa', 'Manes.01G073100' => 'mes', 'Manes.01G266300' => 'mes', 'Manes.02G033300' => 'mes', 'Manes.05G017900' => 'mes', 'Manes.05G046100' => 'mes', 'Manes.08G080900' => 'mes', 'Manes.10G049400' => 'mes', 'Mapoly0009s0186' => 'mpo', 'Mapoly0036s0118' => 'mpo', 'Mapoly0101s0046' => 'mpo', 'MBI04_g30218_MAGBIO' => 'mbi', 'MBI04_g35564_MAGBIO' => 'mbi', 'MBI12_g34011_MAGBIO' => 'mbi', 'MBI14_g04655_MAGBIO' => 'mbi', 'MCO07G653' => 'mco', 'MCO10G173' => 'mco', 'MD01G1087100' => 'mdo', 'MD01G1104200' => 'mdo', 'MD02G1205100' => 'mdo', 'MD04G1079200' => 'mdo', 'MD04G1131400' => 'mdo', 'MD07G1121600' => 'mdo', 'MD07G1157300' => 'mdo', 'MD07G1171000' => 'mdo', 'MD12G1144500' => 'mdo', 'Medtr1g094610' => 'mtr', 'Medtr4g021795' => 'mtr', 'Medtr4g023760' => 'mtr', 'Medtr7g118050' => 'mtr', 'MELO3C005582.2' => 'cme', 'MELO3C005989.2' => 'cme', 'MELO3C006192.2' => 'cme', 'MELO3C009248.2' => 'cme', 'MELO3C019817.2' => 'cme', 'Migut.B01625' => 'egut', 'Migut.B01915' => 'egut', 'Migut.F01721' => 'egut', 'Migut.J00314' => 'egut', 'MSTRG.20742' => 'ama', 'MSTRG.8134' => 'ama', 'Nitab4.5_0000096g0010' => 'nta', 'Nitab4.5_0000202g0030' => 'nta', 'Nitab4.5_0000216g0370' => 'nta', 'Nitab4.5_0000457g0230' => 'nta', 'Nitab4.5_0001702g0170' => 'nta', 'Nitab4.5_0003607g0010' => 'nta', 'Nitab4.5_0004917g0020' => 'nta', 'Nitab4.5_0007059g0010' => 'nta', 'Nitab4.5_0007184g0010' => 'nta', 'Nitab4.5_0007346g0020' => 'nta', 'Nn1g00410' => 'nnu', 'Nn1g01252' => 'nnu', 'Nn2g11168' => 'nnu', 'Nn2g13403' => 'nnu', 'Nn2g13760' => 'nnu', 'Nn4g26380' => 'nnu', 'Oeu000806.2' => 'oeu', 'Oeu005788.1' => 'oeu', 'Oeu006900.3' => 'oeu', 'Oeu007797.1' => 'oeu', 'Oeu011932.1' => 'oeu', 'Oeu022739.1' => 'oeu', 'Oeu037918.1' => 'oeu', 'Oeu055490.2' => 'oeu', 'Os01g0844400' => 'osa', 'Os02g0819100' => 'osa', 'Os03g0804300' => 'osa', 'Os05g0458000' => 'osa', 'Os07g0467800' => 'osa', 'Os12g0602200' => 'osa', 'Peaxi162Scf00013g03444' => 'pax', 'Peaxi162Scf00094g01120' => 'pax', 'Peaxi162Scf00191g01211' => 'pax', 'Peaxi162Scf00238g01110' => 'pax', 'Peaxi162Scf00330g00719' => 'pax', 'Peaxi162Scf00627g00018' => 'pax', 'PGR031G2686' => 'pgr', 'PGR042G0809' => 'pgr', 'PGR142G0193' => 'pgr', 'PGSC0003DMG400011066' => 'stu', 'PGSC0003DMG400012041' => 'stu', 'PGSC0003DMG400013678' => 'stu', 'PGSC0003DMG400023477' => 'stu', 'PGSC0003DMG400025956' => 'stu', 'PGSC0003DMG401019151' => 'stu', 'Phvul.006G116400' => 'pvu', 'Phvul.007G097300' => 'pvu', 'Phvul.010G015000' => 'pvu', 'Phvul.010G083900' => 'pvu', 'Potri.001G117100' => 'ptr', 'Potri.002G147300' => 'ptr', 'Potri.003G115600' => 'ptr', 'Potri.006G087400' => 'ptr', 'Potri.010G226100' => 'ptr', 'Potri.014G069200' => 'ptr', 'Potri.014G104000' => 'ptr', 'Potri.016G100200' => 'ptr', 'Pp3c10_20450' => 'ppa', 'Pp3c1_42400' => 'ppa', 'Pp3c3_24390' => 'ppa', 'Pp3c3_2860' => 'ppa', 'PRCOL_00003193' => 'pco', 'Prupe.2G144500' => 'ppe', 'Prupe.2G195700' => 'ppe', 'Prupe.2G209800' => 'ppe', 'Prupe.5G080000' => 'ppe', 'Prupe.6G257900' => 'ppe', 'Psat3g001160' => 'psa', 'Psat6g181880' => 'psa', 'Psat7g233720' => 'psa', 'PSO063G7587' => 'pso', 'PSO339G2145' => 'pso', 'PSO339G3369' => 'pso', 'PSO478G2747' => 'pso', 'PSO513G0140' => 'pso', 'PSO782G1614' => 'pso', 'PSO782G4889' => 'pso', 'PSO782G5485' => 'pso', 'PSO801G0241' => 'pso', 'QL07p048854' => 'qlo', 'QL08p046745' => 'qlo', 'QL08p052606' => 'qlo', 'QL08p053414' => 'qlo', 'QL08p054868' => 'qlo', 'RcHm_v2.0_Chr1g0350251' => 'rch', 'RcHm_v2.0_Chr1g0360851' => 'rch', 'RcHm_v2.0_Chr1g0362791' => 'rch', 'RcHm_v2.0_Chr3g0466281' => 'rch', 'RcHm_v2.0_Chr7g0201481' => 'rch', 'Rhsim01G0148600' => 'rsi', 'Rhsim05G0194400' => 'rsi', 'Rhsim07G0000700' => 'rsi', 'Rhsim07G0000800' => 'rsi', 'Rhsim07G0027900' => 'rsi', 'Rhsim09G0149500' => 'rsi', 'RhsimUnG0186900' => 'rsi', 'Sabra01G0089900' => 'sbr', 'Sabra02G0114700' => 'sbr', 'Sabra02G0116300' => 'sbr', 'Sabra03G0080100' => 'sbr', 'Sabra08G0024300' => 'sbr', 'Sabra10G0174300' => 'sbr', 'Sabra14G0048900' => 'sbr', 'Sabra14G0076500' => 'sbr', 'SalBow5G2513' => 'sbo', 'Sc01g0002300' => 'sci', 'Sc01g0004450' => 'sci', 'Sc06g0001680' => 'sci', 'Sc23g0003580' => 'sci', 'Sed0000913' => 'sed', 'Sed0001655' => 'sed', 'Sed0007745' => 'sed', 'Sed0010951' => 'sed', 'Sed0017599' => 'sed', 'Sed0021405' => 'sed', 'Sed0022810' => 'sed', 'SEGI_07099' => 'sgi', 'SEGI_11931' => 'sgi', 'SEGI_13187' => 'sgi', 'SEGI_29958' => 'sgi', 'SEGI_36351' => 'sgi', 'SGA_v2.0_scaffold126G33770' => 'sas', 'SGA_v2.0_scaffold153G37003' => 'sas', 'SGA_v2.0_scaffold2G01359' => 'sas', 'SGA_v2.0_scaffold5G03064' => 'sas', 'SGA_v2.0_scaffold95G28903' => 'sas', 'SHI12701' => 'shi', 'SHI26410' => 'shi', 'SHI38997' => 'shi', 'SHI53759' => 'shi', 'SHI53886' => 'shi', 'SHI54714' => 'shi', 'SMO011G0041' => 'smo', 'SMO146G0251' => 'smo', 'SMO160G0004' => 'smo', 'SMO174G0057' => 'smo', 'SMO244G0089' => 'smo', 'SMO296G0011' => 'smo', 'Solyc01g091280.3' => 'sly', 'Solyc05g047610.3' => 'sly', 'Solyc05g047640.3' => 'sly', 'Solyc05g055630.3' => 'sly', 'Solyc10g018160.2' => 'sly', 'Solyc10g084820.2' => 'sly', 'Solyc10g086565.2' => 'sly', 'Sopen01g037030' => 'spe', 'Sopen05g027920' => 'spe', 'Sopen05g034070' => 'spe', 'Sopen10g007260' => 'spe', 'Sopen10g034260' => 'spe', 'Sopen10g035950' => 'spe', 'Sp3g07710' => 'spa', 'Sp4g27420' => 'spa', 'Sp5g02450' => 'spa', 'Sp6g01280' => 'spa', 'Sp6g38480' => 'spa', 'Sp7g20780' => 'spa', 'TAR374G1413' => 'tar', 'TAR623G1777' => 'tar', 'TAR629G2370' => 'tar', 'TAR633G1759' => 'tar', 'TAR636G3387' => 'tar', 'THA.LOC104802447' => 'tha', 'THA.LOC104813916' => 'tha', 'THA.LOC104816423' => 'tha', 'THA.LOC104817246' => 'tha', 'THA.LOC104825895' => 'tha', 'Thecc.01G335200' => 'tca', 'Thecc.01G377400' => 'tca', 'Thecc.03G262200' => 'tca', 'Thecc.05G036800' => 'tca', 'Thecc.10G080500' => 'tca', 'Thecc.10G080800' => 'tca', 'Thhalv10001560m.g' => 'esa', 'Thhalv10006120m.g' => 'esa', 'Thhalv10014375m.g' => 'esa', 'Thhalv10021264m.g' => 'esa', 'Thhalv10028856m.g' => 'esa', 'TPR.G1914' => 'tpr', 'TPR.G4757' => 'tpr', 'TPR.G5595' => 'tpr', 'TWI14G0952' => 'twi', 'TWI14G1307' => 'twi', 'TWI38G2143' => 'twi', 'TWI59G0826' => 'twi', 'TWI77G0527' => 'twi', 'TWI81G0150' => 'twi', 'unitig_21.g21018' => 'ugi', 'unitig_26.g9725' => 'ugi', 'unitig_744.g24653' => 'ugi', 'unitig_749.g13778' => 'ugi', 'unitig_899.g15035' => 'ugi', 'vmacro04296' => 'vma', 'vmacro04852' => 'vma', 'vmacro13404' => 'vma', 'vmacro20169' => 'vma', 'vmacro21014' => 'vma', 'VMungo0331G0237' => 'vmu', 'VMungo0331G0706' => 'vmu', 'VMungo0331G1361' => 'vmu', 'VMungo0331G1489' => 'vmu', 'VMungo0540G1037' => 'vmu', 'VMungo0720G2487' => 'vmu', 'VMungo0720G2721' => 'vmu', 'Zm00001eb086860' => 'zma', 'Zm00001eb104760' => 'zma', 'Zm00001eb148220' => 'zma', 'Zm00001eb259030' => 'zma', 'Zm00001eb289590' => 'zma', 'Zm00001eb420150' => 'zma' ) $gf_id = 'HOM05D000968' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000968' ) $data_identifier = 'HOM05D000968' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 19, 'bol' => (int) 9, 'bra' => (int) 12, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 5, 'ccan' => (int) 7, 'cde' => (int) 5, 'cfa' => (int) 8, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 4, 'dca' => (int) 5, 'din' => (int) 5, 'dzi' => (int) 12, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 25, 'fve' => (int) 5, 'gma' => (int) 9, 'ghi' => (int) 18, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 7, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 5, 'sun' => (int) 2, 'lal' => (int) 9, 'lja' => (int) 5, 'lonja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 9, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 2, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 3, 'stu' => (int) 6, 'pvu' => (int) 4, 'ptr' => (int) 8, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 3, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 1, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 5, 'sas' => (int) 5, 'shi' => (int) 6, 'smo' => (int) 6, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 3, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420150' $species_info = array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ) $local_species = 'cqu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000968', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p31690' => 'bna', 'A03p36040' => 'bna', 'A03p53730' => 'bna', 'A04p01410' => 'bna', 'A05p05420' => 'bna', 'A05p39630' => 'bna', 'A05p39640' => 'bna', 'A09p00970' => 'bna', 'A09p53060' => 'bna', 'A10p31890' => 'bna', 'Aa31LG10G15040' => 'aar', 'Aa31LG1G21090' => 'aar', 'Aa31LG1G26900' => 'aar', 'Aa31LG3G1820' => 'aar', 'Aa31LG5G1100' => 'aar', 'Aa31LG6G4740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2265' => 'aag', 'Actinidia07998' => 'ach', 'Actinidia11266' => 'ach', 'Actinidia12682' => 'ach', 'Actinidia26479' => 'ach', 'Actinidia31406' => 'ach', 'Actinidia32437' => 'ach', 'Actinidia38862' => 'ach', 'Ah.05g174230' => 'amhyb', 'Ah.05g179070' => 'amhyb', 'Ah.05g179090' => 'amhyb', 'Ah.12g059950' => 'amhyb', 'AL3G20480' => 'aly', 'AL4G44520' => 'aly', 'AL5G43110' => 'aly', 'AL6G13890' => 'aly', 'AL6G52620' => 'aly', 'AL7G30830' => 'aly', 'Aqoxy1G00899' => 'aox', 'Aqoxy5G04333' => 'aox', 'Aqoxy7G00641' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3IZ0NN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4EF6AW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W9P8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79GA3M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C43NQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFCU6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G95YVJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCHK29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LU1UG8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX91RN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGB4B1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8DA0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9H7JI' => 'arhy', 'AT3G09320' => 'ath', 'AT3G60800' => 'ath', 'AT4G00840' => 'ath', 'AT4G22750' => 'ath', 'AT5G04270' => 'ath', 'ATR0090G003' => 'atr', 'ATR0559G349' => 'atr', 'ATR0680G261' => 'atr', 'ATR0810G048' => 'atr', 'Atru.chr12.831' => 'acertr', 'Atru.chr5.303' => 'acertr', 'Atru.chr5.748' => 'acertr', 'Atru.chr8.1999' => 'acertr', 'Atru.chr9.1436' => 'acertr', 'AUR62004211' => 'cqu', 'AUR62004548' => 'cqu', 'AUR62013637' => 'cqu', 'AUR62022662' => 'cqu', 'AUR62025777' => 'cqu', 'AUR62042386' => 'cqu', 'BcaB01g02310' => 'bca', 'BcaB01g06062' => 'bca', 'BcaB02g08975' => 'bca', 'BcaB02g08980' => 'bca', 'BcaC01g04228' => 'bca', 'BcaC01g06830' => 'bca', 'BcaC02g10186' => 'bca', 'BcaC02g12214' => 'bca', 'BcaC04g24101' => 'bca', 'BcaC05g29520' => 'bca', 'BcaC05g29661' => 'bca', 'BcaC06g32130' => 'bca', 'BcaC06g32131' => 'bca', 'BcaC07g40601' => 'bca', 'BcaC07g42641' => 'bca', 'BcaNung01038' => 'bca', 'BcaNung01676' => 'bca', 'BcaNung02480' => 'bca', 'BcaNung07376' => 'bca', 'BolC3t16146H' => 'bol', 'BolC3t16637H' => 'bol', 'BolC4t22257H' => 'bol', 'BolC4t24728H' => 'bol', 'BolC5t34517H' => 'bol', 'BolC7t45703H' => 'bol', 'BolC8t51166H' => 'bol', 'BolC9t53038H' => 'bol', 'BolC9t60000H' => 'bol', 'BraA01t01345Z' => 'bra', 'BraA01t01346Z' => 'bra', 'BraA01t01348Z' => 'bra', 'BraA03t12347Z' => 'bra', 'BraA03t12775Z' => 'bra', 'BraA03t14439Z' => 'bra', 'BraA04t15860Z' => 'bra', 'BraA05t19511Z' => 'bra', 'BraA05t22746Z' => 'bra', 'BraA09t35767Z' => 'bra', 'BraA09t40732Z' => 'bra', 'BraA10t45233Z' => 'bra', 'C03p38720' => 'bna', 'C03p43680' => 'bna', 'C04p06350' => 'bna', 'C04p31800' => 'bna', 'C05p58680' => 'bna', 'C07p52110' => 'bna', 'C08p35760' => 'bna', 'C09p01050' => 'bna', 'C09p72600' => 'bna', 'CAN.G106.2' => 'can', 'CAN.G1482.1' => 'can', 'CAN.G324.12' => 'can', 'CAN.G388.20' => 'can', 'CAN.G412.7' => 'can', 'CAN.G694.32' => 'can', 'CAN.G92.12' => 'can', 'CANSAT11G2353' => 'cansat', 'CANSAT21G1398' => 'cansat', 'CANSAT56G2456' => 'cansat', 'CANSAT56G3031' => 'cansat', 'CANSAT56G4539' => 'cansat', 'CARHR083680' => 'chi', 'CARHR171190' => 'chi', 'CARHR209010' => 'chi', 'CARHR229680' => 'chi', 'CARHR249490' => 'chi', 'Carub.0003s0844' => 'cru', 'Carub.0005s2755' => 'cru', 'Carub.0006s0322' => 'cru', 'Carub.0006s3586' => 'cru', 'Carub.0007s1855' => 'cru', 'Ca_07808_v3' => 'car', 'Ca_09535_v3' => 'car', 'Ca_10548_v3' => 'car', 'Ca_19913_v3' => 'car', 'Ca_19916_v3' => 'car', 'Ca_19975_v3' => 'car', 'CBR_g22876' => 'cbr', 'CBR_g22879' => 'cbr', 'CBR_g38491' => 'cbr', 'CBR_g54185' => 'cbr', 'CBR_g54190' => 'cbr', 'Cc02_g11020' => 'ccan', 'Cc02_g23920' => 'ccan', 'Cc02_g39860' => 'ccan', 'Cc02_g39870' => 'ccan', 'Cc03_g06760' => 'ccan', 'Cc06_g02450' => 'ccan', 'Cc09_g09450' => 'ccan', 'CDE02G1959' => 'cde', 'CDE04G0600' => 'cde', 'CDE07G1996' => 'cde', 'CDE07G2078' => 'cde', 'CDE11G0611' => 'cde', 'Cfa001683' => 'cfa', 'Cfa001734' => 'cfa', 'Cfa001737' => 'cfa', 'Cfa003751' => 'cfa', 'Cfa012019' => 'cfa', 'Cfa017353' => 'cfa', 'Cfa017732' => 'cfa', 'Cfa022464' => 'cfa', 'Ciclev10012400m.g' => 'ccl', 'Ciclev10021242m.g' => 'ccl', 'Ciclev10021302m.g' => 'ccl', 'Ciclev10021463m.g' => 'ccl', 'Ciclev10032359m.g' => 'ccl', 'CiPaw.01G081000' => 'cil', 'CiPaw.01G262500' => 'cil', 'CiPaw.01G269800' => 'cil', 'CiPaw.02G168400' => 'cil', 'CiPaw.05G119500' => 'cil', 'CiPaw.11G147300' => 'cil', 'ClCG01G003630' => 'cla', 'ClCG05G000510' => 'cla', 'ClCG05G002300' => 'cla', 'ClCG08G007650' => 'cla', 'ClCG10G021250' => 'cla', 'COL.COLO4_06218' => 'col', 'COL.COLO4_12538' => 'col', 'COL.COLO4_14775' => 'col', 'COL.COLO4_23875' => 'col', 'Cpa.g.sc141.16' => 'cpa', 'Cpa.g.sc169.16' => 'cpa', 'Cpa.g.sc244.4' => 'cpa', 'Cpa.g.sc244.5' => 'cpa', 'Cpa.g.sc29.87' => 'cpa', 'Cpa.g.sc53.115' => 'cpa', 'Cre03.g207502' => 'cre', 'Cre06.g277000' => 'cre', 'Cre09.g394050' => 'cre', 'CsaV3_3G007680' => 'csa', 'CsaV3_3G009710' => 'csa', 'CsaV3_3G034790' => 'csa', 'CsaV3_5G003750' => 'csa', 'CsaV3_6G036620' => 'csa', 'CSS0002288' => 'camsi', 'CSS0011250' => 'camsi', 'CSS0021619' => 'camsi', 'CSS0046701' => 'camsi', 'DCAR_006420' => 'dca', 'DCAR_006865' => 'dca', 'DCAR_008558' => 'dca', 'DCAR_028754' => 'dca', 'DCAR_028755' => 'dca', 'Dinv31218' => 'din', 'Dinv32371' => 'din', 'Dinv34250' => 'din', 'Dinv37156' => 'din', 'Dinv43704' => 'din', 'Duzib093G1811' => 'dzi', 'Duzib106G1622' => 'dzi', 'Duzib114G0504' => 'dzi', 'Duzib128G0338' => 'dzi', 'Duzib128G1577' => 'dzi', 'Duzib133G0104' => 'dzi', 'Duzib133G1080' => 'dzi', 'Duzib138G0324' => 'dzi', 'Duzib138G0394' => 'dzi', 'Duzib205G0122' => 'dzi', 'Duzib268G1020' => 'dzi', 'Duzib268G1359' => 'dzi', 'ECA232G3929' => 'eca', 'ECA236G2210' => 'eca', 'ECA236G2287' => 'eca', 'ECA240G4568' => 'eca', 'ECA247G0894' => 'eca', 'EL10Ac1g00200' => 'bvu', 'EL10Ac1g00886' => 'bvu', 'EL10As1g23091' => 'bvu', 'EL10As1g23092' => 'bvu', 'Eucgr.A01284' => 'egr', 'Eucgr.A01285' => 'egr', 'Eucgr.D02456' => 'egr', 'Eucgr.E00018' => 'egr', 'Eucgr.E01439' => 'egr', 'Eucgr.G02859' => 'egr', 'FAN01G0168' => 'fan', 'FAN01G0453' => 'fan', 'FAN01G2761' => 'fan', 'FAN02G1239' => 'fan', 'FAN03G0645' => 'fan', 'FAN03G2707' => 'fan', 'FAN03G2978' => 'fan', 'FAN04G0227' => 'fan', 'FAN06G0091' => 'fan', 'FAN06G1418' => 'fan', 'FAN06G1512' => 'fan', 'FAN06G1986' => 'fan', 'FAN06G2905' => 'fan', 'FAN06G4325' => 'fan', 'FAN08G0033' => 'fan', 'FAN09G0642' => 'fan', 'FAN10G1763' => 'fan', 'FAN10G2026' => 'fan', 'FAN10G2513' => 'fan', 'FAN10G3402' => 'fan', 'FAN10G3564' => 'fan', 'FAN10G3987' => 'fan', 'FAN13G1490' => 'fan', 'FAN14G5857' => 'fan', 'FAN18G1188' => 'fan', 'FvH4_5g00750' => 'fve', 'FvH4_6g13410' => 'fve', 'FvH4_7g11740' => 'fve', 'FvH4_7g17410' => 'fve', 'FvH4_7g18860' => 'fve', 'Glyma.01G099100' => 'gma', 'Glyma.01G142300' => 'gma', 'Glyma.03G025500' => 'gma', 'Glyma.03G069700' => 'gma', 'Glyma.03G260000' => 'gma', 'Glyma.09G269800' => 'gma', 'Glyma.10G208700' => 'gma', 'Glyma.18G220400' => 'gma', 'Glyma.20G182000' => 'gma', 'Gohir.A01G221726' => 'ghi', 'Gohir.A07G134600' => 'ghi', 'Gohir.A07G146000' => 'ghi', 'Gohir.A08G173900' => 'ghi', 'Gohir.A09G194900' => 'ghi', 'Gohir.A10G204100' => 'ghi', 'Gohir.A11G080600' => 'ghi', 'Gohir.A11G327500' => 'ghi', 'Gohir.A12G101800' => 'ghi', 'Gohir.D01G211200' => 'ghi', 'Gohir.D07G139200' => 'ghi', 'Gohir.D07G152100' => 'ghi', 'Gohir.D08G192600' => 'ghi', 'Gohir.D09G189200' => 'ghi', 'Gohir.D10G212000' => 'ghi', 'Gohir.D11G085200' => 'ghi', 'Gohir.D11G346400' => 'ghi', 'Gohir.D12G104800' => 'ghi', 'Gorai.001G151300' => 'gra', 'Gorai.001G174100' => 'gra', 'Gorai.002G257000' => 'gra', 'Gorai.004G202600' => 'gra', 'Gorai.007G090900' => 'gra', 'Gorai.007G376700' => 'gra', 'Gorai.008G114100' => 'gra', 'Gorai.011G237900' => 'gra', 'GSVIVG01005450001' => 'vvi', 'GSVIVG01016232001' => 'vvi', 'GSVIVG01026157001' => 'vvi', 'GSVIVG01027419001' => 'vvi', 'GSVIVG01027631001' => 'vvi', 'GSVIVG01034143001' => 'vvi', 'HanXRQChr03g0093921' => 'han', 'HanXRQChr04g0120001' => 'han', 'HanXRQChr04g0122561' => 'han', 'HanXRQChr09g0246851' => 'han', 'HanXRQChr10g0293311' => 'han', 'HanXRQChr13g0425231' => 'han', 'HanXRQChr16g0532571' => 'han', 'Haze_09050' => 'cav', 'Haze_15715' => 'cav', 'Haze_15716' => 'cav', 'Haze_16803' => 'cav', 'Haze_16850' => 'cav', 'Hma1.2p1_0301F.1_g118655' => 'hma', 'Hma1.2p1_0309F.1_g120590' => 'hma', 'Hma1.2p1_0936F.1_g238900' => 'hma', 'Hma1.2p1_3552F.1_g336740' => 'hma', 'HPP92_003520' => 'vpl', 'HPP92_006628' => 'vpl', 'HPP92_006645' => 'vpl', 'HPP92_014669' => 'vpl', 'HPP92_015077' => 'vpl', 'Hund16742' => 'sun', 'Hund17022' => 'sun', 'Lalb_Chr02g0152131' => 'lal', 'Lalb_Chr05g0225371' => 'lal', 'Lalb_Chr07g0189841' => 'lal', 'Lalb_Chr07g0192961' => 'lal', 'Lalb_Chr12g0208221' => 'lal', 'Lalb_Chr13g0291211' => 'lal', 'Lalb_Chr13g0291781' => 'lal', 'Lalb_Chr18g0044651' => 'lal', 'Lalb_Chr21g0313731' => 'lal', 'Lj1g0022533' => 'lja', 'Lj2A18T50' => 'lonja', 'Lj2A92G93' => 'lonja', 'Lj3A965T73' => 'lonja', 'Lj3g0000673' => 'lja', 'Lj3g0002666' => 'lja', 'Lj4g0016985' => 'lja', 'Lj5g0003625' => 'lja', 'Lj7A529G36' => 'lonja', 'Lj9A569T49' => 'lonja', 'Lj9A604T63' => 'lonja', 'Lsat_1_v5_gn_3_132060' => 'lsa', 'Lsat_1_v5_gn_4_68941' => 'lsa', 'Lsat_1_v5_gn_5_95580' => 'lsa', 'Lsat_1_v5_gn_7_161' => 'lsa', 'Lsat_1_v5_gn_7_7041' => 'lsa', 'Lsat_1_v5_gn_9_33481' => 'lsa', 'Lsat_1_v5_gn_9_68260' => 'lsa', 'Manes.01G073100' => 'mes', 'Manes.01G266300' => 'mes', 'Manes.02G033300' => 'mes', 'Manes.05G017900' => 'mes', 'Manes.05G046100' => 'mes', 'Manes.08G080900' => 'mes', 'Manes.10G049400' => 'mes', 'Mapoly0009s0186' => 'mpo', 'Mapoly0036s0118' => 'mpo', 'Mapoly0101s0046' => 'mpo', 'MBI04_g30218_MAGBIO' => 'mbi', 'MBI04_g35564_MAGBIO' => 'mbi', 'MBI12_g34011_MAGBIO' => 'mbi', 'MBI14_g04655_MAGBIO' => 'mbi', 'MCO07G653' => 'mco', 'MCO10G173' => 'mco', 'MD01G1087100' => 'mdo', 'MD01G1104200' => 'mdo', 'MD02G1205100' => 'mdo', 'MD04G1079200' => 'mdo', 'MD04G1131400' => 'mdo', 'MD07G1121600' => 'mdo', 'MD07G1157300' => 'mdo', 'MD07G1171000' => 'mdo', 'MD12G1144500' => 'mdo', 'Medtr1g094610' => 'mtr', 'Medtr4g021795' => 'mtr', 'Medtr4g023760' => 'mtr', 'Medtr7g118050' => 'mtr', 'MELO3C005582.2' => 'cme', 'MELO3C005989.2' => 'cme', 'MELO3C006192.2' => 'cme', 'MELO3C009248.2' => 'cme', 'MELO3C019817.2' => 'cme', 'Migut.B01625' => 'egut', 'Migut.B01915' => 'egut', 'Migut.F01721' => 'egut', 'Migut.J00314' => 'egut', 'MSTRG.20742' => 'ama', 'MSTRG.8134' => 'ama', 'Nitab4.5_0000096g0010' => 'nta', 'Nitab4.5_0000202g0030' => 'nta', 'Nitab4.5_0000216g0370' => 'nta', 'Nitab4.5_0000457g0230' => 'nta', 'Nitab4.5_0001702g0170' => 'nta', 'Nitab4.5_0003607g0010' => 'nta', 'Nitab4.5_0004917g0020' => 'nta', 'Nitab4.5_0007059g0010' => 'nta', 'Nitab4.5_0007184g0010' => 'nta', 'Nitab4.5_0007346g0020' => 'nta', 'Nn1g00410' => 'nnu', 'Nn1g01252' => 'nnu', 'Nn2g11168' => 'nnu', 'Nn2g13403' => 'nnu', 'Nn2g13760' => 'nnu', 'Nn4g26380' => 'nnu', 'Oeu000806.2' => 'oeu', 'Oeu005788.1' => 'oeu', 'Oeu006900.3' => 'oeu', 'Oeu007797.1' => 'oeu', 'Oeu011932.1' => 'oeu', 'Oeu022739.1' => 'oeu', 'Oeu037918.1' => 'oeu', 'Oeu055490.2' => 'oeu', 'Os01g0844400' => 'osa', 'Os02g0819100' => 'osa', 'Os03g0804300' => 'osa', 'Os05g0458000' => 'osa', 'Os07g0467800' => 'osa', 'Os12g0602200' => 'osa', 'Peaxi162Scf00013g03444' => 'pax', 'Peaxi162Scf00094g01120' => 'pax', 'Peaxi162Scf00191g01211' => 'pax', 'Peaxi162Scf00238g01110' => 'pax', 'Peaxi162Scf00330g00719' => 'pax', 'Peaxi162Scf00627g00018' => 'pax', 'PGR031G2686' => 'pgr', 'PGR042G0809' => 'pgr', 'PGR142G0193' => 'pgr', 'PGSC0003DMG400011066' => 'stu', 'PGSC0003DMG400012041' => 'stu', 'PGSC0003DMG400013678' => 'stu', 'PGSC0003DMG400023477' => 'stu', 'PGSC0003DMG400025956' => 'stu', 'PGSC0003DMG401019151' => 'stu', 'Phvul.006G116400' => 'pvu', 'Phvul.007G097300' => 'pvu', 'Phvul.010G015000' => 'pvu', 'Phvul.010G083900' => 'pvu', 'Potri.001G117100' => 'ptr', 'Potri.002G147300' => 'ptr', 'Potri.003G115600' => 'ptr', 'Potri.006G087400' => 'ptr', 'Potri.010G226100' => 'ptr', 'Potri.014G069200' => 'ptr', 'Potri.014G104000' => 'ptr', 'Potri.016G100200' => 'ptr', 'Pp3c10_20450' => 'ppa', 'Pp3c1_42400' => 'ppa', 'Pp3c3_24390' => 'ppa', 'Pp3c3_2860' => 'ppa', 'PRCOL_00003193' => 'pco', 'Prupe.2G144500' => 'ppe', 'Prupe.2G195700' => 'ppe', 'Prupe.2G209800' => 'ppe', 'Prupe.5G080000' => 'ppe', 'Prupe.6G257900' => 'ppe', 'Psat3g001160' => 'psa', 'Psat6g181880' => 'psa', 'Psat7g233720' => 'psa', 'PSO063G7587' => 'pso', 'PSO339G2145' => 'pso', 'PSO339G3369' => 'pso', 'PSO478G2747' => 'pso', 'PSO513G0140' => 'pso', 'PSO782G1614' => 'pso', 'PSO782G4889' => 'pso', 'PSO782G5485' => 'pso', 'PSO801G0241' => 'pso', 'QL07p048854' => 'qlo', 'QL08p046745' => 'qlo', 'QL08p052606' => 'qlo', 'QL08p053414' => 'qlo', 'QL08p054868' => 'qlo', 'RcHm_v2.0_Chr1g0350251' => 'rch', 'RcHm_v2.0_Chr1g0360851' => 'rch', 'RcHm_v2.0_Chr1g0362791' => 'rch', 'RcHm_v2.0_Chr3g0466281' => 'rch', 'RcHm_v2.0_Chr7g0201481' => 'rch', 'Rhsim01G0148600' => 'rsi', 'Rhsim05G0194400' => 'rsi', 'Rhsim07G0000700' => 'rsi', 'Rhsim07G0000800' => 'rsi', 'Rhsim07G0027900' => 'rsi', 'Rhsim09G0149500' => 'rsi', 'RhsimUnG0186900' => 'rsi', 'Sabra01G0089900' => 'sbr', 'Sabra02G0114700' => 'sbr', 'Sabra02G0116300' => 'sbr', 'Sabra03G0080100' => 'sbr', 'Sabra08G0024300' => 'sbr', 'Sabra10G0174300' => 'sbr', 'Sabra14G0048900' => 'sbr', 'Sabra14G0076500' => 'sbr', 'SalBow5G2513' => 'sbo', 'Sc01g0002300' => 'sci', 'Sc01g0004450' => 'sci', 'Sc06g0001680' => 'sci', 'Sc23g0003580' => 'sci', 'Sed0000913' => 'sed', 'Sed0001655' => 'sed', 'Sed0007745' => 'sed', 'Sed0010951' => 'sed', 'Sed0017599' => 'sed', 'Sed0021405' => 'sed', 'Sed0022810' => 'sed', 'SEGI_07099' => 'sgi', 'SEGI_11931' => 'sgi', 'SEGI_13187' => 'sgi', 'SEGI_29958' => 'sgi', 'SEGI_36351' => 'sgi', 'SGA_v2.0_scaffold126G33770' => 'sas', 'SGA_v2.0_scaffold153G37003' => 'sas', 'SGA_v2.0_scaffold2G01359' => 'sas', 'SGA_v2.0_scaffold5G03064' => 'sas', 'SGA_v2.0_scaffold95G28903' => 'sas', 'SHI12701' => 'shi', 'SHI26410' => 'shi', 'SHI38997' => 'shi', 'SHI53759' => 'shi', 'SHI53886' => 'shi', 'SHI54714' => 'shi', 'SMO011G0041' => 'smo', 'SMO146G0251' => 'smo', 'SMO160G0004' => 'smo', 'SMO174G0057' => 'smo', 'SMO244G0089' => 'smo', 'SMO296G0011' => 'smo', 'Solyc01g091280.3' => 'sly', 'Solyc05g047610.3' => 'sly', 'Solyc05g047640.3' => 'sly', 'Solyc05g055630.3' => 'sly', 'Solyc10g018160.2' => 'sly', 'Solyc10g084820.2' => 'sly', 'Solyc10g086565.2' => 'sly', 'Sopen01g037030' => 'spe', 'Sopen05g027920' => 'spe', 'Sopen05g034070' => 'spe', 'Sopen10g007260' => 'spe', 'Sopen10g034260' => 'spe', 'Sopen10g035950' => 'spe', 'Sp3g07710' => 'spa', 'Sp4g27420' => 'spa', 'Sp5g02450' => 'spa', 'Sp6g01280' => 'spa', 'Sp6g38480' => 'spa', 'Sp7g20780' => 'spa', 'TAR374G1413' => 'tar', 'TAR623G1777' => 'tar', 'TAR629G2370' => 'tar', 'TAR633G1759' => 'tar', 'TAR636G3387' => 'tar', 'THA.LOC104802447' => 'tha', 'THA.LOC104813916' => 'tha', 'THA.LOC104816423' => 'tha', 'THA.LOC104817246' => 'tha', 'THA.LOC104825895' => 'tha', 'Thecc.01G335200' => 'tca', 'Thecc.01G377400' => 'tca', 'Thecc.03G262200' => 'tca', 'Thecc.05G036800' => 'tca', 'Thecc.10G080500' => 'tca', 'Thecc.10G080800' => 'tca', 'Thhalv10001560m.g' => 'esa', 'Thhalv10006120m.g' => 'esa', 'Thhalv10014375m.g' => 'esa', 'Thhalv10021264m.g' => 'esa', 'Thhalv10028856m.g' => 'esa', 'TPR.G1914' => 'tpr', 'TPR.G4757' => 'tpr', 'TPR.G5595' => 'tpr', 'TWI14G0952' => 'twi', 'TWI14G1307' => 'twi', 'TWI38G2143' => 'twi', 'TWI59G0826' => 'twi', 'TWI77G0527' => 'twi', 'TWI81G0150' => 'twi', 'unitig_21.g21018' => 'ugi', 'unitig_26.g9725' => 'ugi', 'unitig_744.g24653' => 'ugi', 'unitig_749.g13778' => 'ugi', 'unitig_899.g15035' => 'ugi', 'vmacro04296' => 'vma', 'vmacro04852' => 'vma', 'vmacro13404' => 'vma', 'vmacro20169' => 'vma', 'vmacro21014' => 'vma', 'VMungo0331G0237' => 'vmu', 'VMungo0331G0706' => 'vmu', 'VMungo0331G1361' => 'vmu', 'VMungo0331G1489' => 'vmu', 'VMungo0540G1037' => 'vmu', 'VMungo0720G2487' => 'vmu', 'VMungo0720G2721' => 'vmu', 'Zm00001eb086860' => 'zma', 'Zm00001eb104760' => 'zma', 'Zm00001eb148220' => 'zma', 'Zm00001eb259030' => 'zma', 'Zm00001eb289590' => 'zma', 'Zm00001eb420150' => 'zma' ), 'gf_id' => 'HOM05D000968', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000968' ), 'data_identifier' => 'HOM05D000968', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000968', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p31690' => 'bna', 'A03p36040' => 'bna', 'A03p53730' => 'bna', 'A04p01410' => 'bna', 'A05p05420' => 'bna', 'A05p39630' => 'bna', 'A05p39640' => 'bna', 'A09p00970' => 'bna', 'A09p53060' => 'bna', 'A10p31890' => 'bna', 'Aa31LG10G15040' => 'aar', 'Aa31LG1G21090' => 'aar', 'Aa31LG1G26900' => 'aar', 'Aa31LG3G1820' => 'aar', 'Aa31LG5G1100' => 'aar', 'Aa31LG6G4740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2265' => 'aag', 'Actinidia07998' => 'ach', 'Actinidia11266' => 'ach', 'Actinidia12682' => 'ach', 'Actinidia26479' => 'ach', 'Actinidia31406' => 'ach', 'Actinidia32437' => 'ach', 'Actinidia38862' => 'ach', 'Ah.05g174230' => 'amhyb', 'Ah.05g179070' => 'amhyb', 'Ah.05g179090' => 'amhyb', 'Ah.12g059950' => 'amhyb', 'AL3G20480' => 'aly', 'AL4G44520' => 'aly', 'AL5G43110' => 'aly', 'AL6G13890' => 'aly', 'AL6G52620' => 'aly', 'AL7G30830' => 'aly', 'Aqoxy1G00899' => 'aox', 'Aqoxy5G04333' => 'aox', 'Aqoxy7G00641' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3IZ0NN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4EF6AW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W9P8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79GA3M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C43NQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFCU6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G95YVJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCHK29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LU1UG8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX91RN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGB4B1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8DA0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9H7JI' => 'arhy', 'AT3G09320' => 'ath', 'AT3G60800' => 'ath', 'AT4G00840' => 'ath', 'AT4G22750' => 'ath', 'AT5G04270' => 'ath', 'ATR0090G003' => 'atr', 'ATR0559G349' => 'atr', 'ATR0680G261' => 'atr', 'ATR0810G048' => 'atr', 'Atru.chr12.831' => 'acertr', 'Atru.chr5.303' => 'acertr', 'Atru.chr5.748' => 'acertr', 'Atru.chr8.1999' => 'acertr', 'Atru.chr9.1436' => 'acertr', 'AUR62004211' => 'cqu', 'AUR62004548' => 'cqu', 'AUR62013637' => 'cqu', 'AUR62022662' => 'cqu', 'AUR62025777' => 'cqu', 'AUR62042386' => 'cqu', 'BcaB01g02310' => 'bca', 'BcaB01g06062' => 'bca', 'BcaB02g08975' => 'bca', 'BcaB02g08980' => 'bca', 'BcaC01g04228' => 'bca', 'BcaC01g06830' => 'bca', 'BcaC02g10186' => 'bca', 'BcaC02g12214' => 'bca', 'BcaC04g24101' => 'bca', 'BcaC05g29520' => 'bca', 'BcaC05g29661' => 'bca', 'BcaC06g32130' => 'bca', 'BcaC06g32131' => 'bca', 'BcaC07g40601' => 'bca', 'BcaC07g42641' => 'bca', 'BcaNung01038' => 'bca', 'BcaNung01676' => 'bca', 'BcaNung02480' => 'bca', 'BcaNung07376' => 'bca', 'BolC3t16146H' => 'bol', 'BolC3t16637H' => 'bol', 'BolC4t22257H' => 'bol', 'BolC4t24728H' => 'bol', 'BolC5t34517H' => 'bol', 'BolC7t45703H' => 'bol', 'BolC8t51166H' => 'bol', 'BolC9t53038H' => 'bol', 'BolC9t60000H' => 'bol', 'BraA01t01345Z' => 'bra', 'BraA01t01346Z' => 'bra', 'BraA01t01348Z' => 'bra', 'BraA03t12347Z' => 'bra', 'BraA03t12775Z' => 'bra', 'BraA03t14439Z' => 'bra', 'BraA04t15860Z' => 'bra', 'BraA05t19511Z' => 'bra', 'BraA05t22746Z' => 'bra', 'BraA09t35767Z' => 'bra', 'BraA09t40732Z' => 'bra', 'BraA10t45233Z' => 'bra', 'C03p38720' => 'bna', 'C03p43680' => 'bna', 'C04p06350' => 'bna', 'C04p31800' => 'bna', 'C05p58680' => 'bna', 'C07p52110' => 'bna', 'C08p35760' => 'bna', 'C09p01050' => 'bna', 'C09p72600' => 'bna', 'CAN.G106.2' => 'can', 'CAN.G1482.1' => 'can', 'CAN.G324.12' => 'can', 'CAN.G388.20' => 'can', 'CAN.G412.7' => 'can', 'CAN.G694.32' => 'can', 'CAN.G92.12' => 'can', 'CANSAT11G2353' => 'cansat', 'CANSAT21G1398' => 'cansat', 'CANSAT56G2456' => 'cansat', 'CANSAT56G3031' => 'cansat', 'CANSAT56G4539' => 'cansat', 'CARHR083680' => 'chi', 'CARHR171190' => 'chi', 'CARHR209010' => 'chi', 'CARHR229680' => 'chi', 'CARHR249490' => 'chi', 'Carub.0003s0844' => 'cru', 'Carub.0005s2755' => 'cru', 'Carub.0006s0322' => 'cru', 'Carub.0006s3586' => 'cru', 'Carub.0007s1855' => 'cru', 'Ca_07808_v3' => 'car', 'Ca_09535_v3' => 'car', 'Ca_10548_v3' => 'car', 'Ca_19913_v3' => 'car', 'Ca_19916_v3' => 'car', 'Ca_19975_v3' => 'car', 'CBR_g22876' => 'cbr', 'CBR_g22879' => 'cbr', 'CBR_g38491' => 'cbr', 'CBR_g54185' => 'cbr', 'CBR_g54190' => 'cbr', 'Cc02_g11020' => 'ccan', 'Cc02_g23920' => 'ccan', 'Cc02_g39860' => 'ccan', 'Cc02_g39870' => 'ccan', 'Cc03_g06760' => 'ccan', 'Cc06_g02450' => 'ccan', 'Cc09_g09450' => 'ccan', 'CDE02G1959' => 'cde', 'CDE04G0600' => 'cde', 'CDE07G1996' => 'cde', 'CDE07G2078' => 'cde', 'CDE11G0611' => 'cde', 'Cfa001683' => 'cfa', 'Cfa001734' => 'cfa', 'Cfa001737' => 'cfa', 'Cfa003751' => 'cfa', 'Cfa012019' => 'cfa', 'Cfa017353' => 'cfa', 'Cfa017732' => 'cfa', 'Cfa022464' => 'cfa', 'Ciclev10012400m.g' => 'ccl', 'Ciclev10021242m.g' => 'ccl', 'Ciclev10021302m.g' => 'ccl', 'Ciclev10021463m.g' => 'ccl', 'Ciclev10032359m.g' => 'ccl', 'CiPaw.01G081000' => 'cil', 'CiPaw.01G262500' => 'cil', 'CiPaw.01G269800' => 'cil', 'CiPaw.02G168400' => 'cil', 'CiPaw.05G119500' => 'cil', 'CiPaw.11G147300' => 'cil', 'ClCG01G003630' => 'cla', 'ClCG05G000510' => 'cla', 'ClCG05G002300' => 'cla', 'ClCG08G007650' => 'cla', 'ClCG10G021250' => 'cla', 'COL.COLO4_06218' => 'col', 'COL.COLO4_12538' => 'col', 'COL.COLO4_14775' => 'col', 'COL.COLO4_23875' => 'col', 'Cpa.g.sc141.16' => 'cpa', 'Cpa.g.sc169.16' => 'cpa', 'Cpa.g.sc244.4' => 'cpa', 'Cpa.g.sc244.5' => 'cpa', 'Cpa.g.sc29.87' => 'cpa', 'Cpa.g.sc53.115' => 'cpa', 'Cre03.g207502' => 'cre', 'Cre06.g277000' => 'cre', 'Cre09.g394050' => 'cre', 'CsaV3_3G007680' => 'csa', 'CsaV3_3G009710' => 'csa', 'CsaV3_3G034790' => 'csa', 'CsaV3_5G003750' => 'csa', 'CsaV3_6G036620' => 'csa', 'CSS0002288' => 'camsi', 'CSS0011250' => 'camsi', 'CSS0021619' => 'camsi', 'CSS0046701' => 'camsi', 'DCAR_006420' => 'dca', 'DCAR_006865' => 'dca', 'DCAR_008558' => 'dca', 'DCAR_028754' => 'dca', 'DCAR_028755' => 'dca', 'Dinv31218' => 'din', 'Dinv32371' => 'din', 'Dinv34250' => 'din', 'Dinv37156' => 'din', 'Dinv43704' => 'din', 'Duzib093G1811' => 'dzi', 'Duzib106G1622' => 'dzi', 'Duzib114G0504' => 'dzi', 'Duzib128G0338' => 'dzi', 'Duzib128G1577' => 'dzi', 'Duzib133G0104' => 'dzi', 'Duzib133G1080' => 'dzi', 'Duzib138G0324' => 'dzi', 'Duzib138G0394' => 'dzi', 'Duzib205G0122' => 'dzi', 'Duzib268G1020' => 'dzi', 'Duzib268G1359' => 'dzi', 'ECA232G3929' => 'eca', 'ECA236G2210' => 'eca', 'ECA236G2287' => 'eca', 'ECA240G4568' => 'eca', 'ECA247G0894' => 'eca', 'EL10Ac1g00200' => 'bvu', 'EL10Ac1g00886' => 'bvu', 'EL10As1g23091' => 'bvu', 'EL10As1g23092' => 'bvu', 'Eucgr.A01284' => 'egr', 'Eucgr.A01285' => 'egr', 'Eucgr.D02456' => 'egr', 'Eucgr.E00018' => 'egr', 'Eucgr.E01439' => 'egr', 'Eucgr.G02859' => 'egr', 'FAN01G0168' => 'fan', 'FAN01G0453' => 'fan', 'FAN01G2761' => 'fan', 'FAN02G1239' => 'fan', 'FAN03G0645' => 'fan', 'FAN03G2707' => 'fan', 'FAN03G2978' => 'fan', 'FAN04G0227' => 'fan', 'FAN06G0091' => 'fan', 'FAN06G1418' => 'fan', 'FAN06G1512' => 'fan', 'FAN06G1986' => 'fan', 'FAN06G2905' => 'fan', 'FAN06G4325' => 'fan', 'FAN08G0033' => 'fan', 'FAN09G0642' => 'fan', 'FAN10G1763' => 'fan', 'FAN10G2026' => 'fan', 'FAN10G2513' => 'fan', 'FAN10G3402' => 'fan', 'FAN10G3564' => 'fan', 'FAN10G3987' => 'fan', 'FAN13G1490' => 'fan', 'FAN14G5857' => 'fan', 'FAN18G1188' => 'fan', 'FvH4_5g00750' => 'fve', 'FvH4_6g13410' => 'fve', 'FvH4_7g11740' => 'fve', 'FvH4_7g17410' => 'fve', 'FvH4_7g18860' => 'fve', 'Glyma.01G099100' => 'gma', 'Glyma.01G142300' => 'gma', 'Glyma.03G025500' => 'gma', 'Glyma.03G069700' => 'gma', 'Glyma.03G260000' => 'gma', 'Glyma.09G269800' => 'gma', 'Glyma.10G208700' => 'gma', 'Glyma.18G220400' => 'gma', 'Glyma.20G182000' => 'gma', 'Gohir.A01G221726' => 'ghi', 'Gohir.A07G134600' => 'ghi', 'Gohir.A07G146000' => 'ghi', 'Gohir.A08G173900' => 'ghi', 'Gohir.A09G194900' => 'ghi', 'Gohir.A10G204100' => 'ghi', 'Gohir.A11G080600' => 'ghi', 'Gohir.A11G327500' => 'ghi', 'Gohir.A12G101800' => 'ghi', 'Gohir.D01G211200' => 'ghi', 'Gohir.D07G139200' => 'ghi', 'Gohir.D07G152100' => 'ghi', 'Gohir.D08G192600' => 'ghi', 'Gohir.D09G189200' => 'ghi', 'Gohir.D10G212000' => 'ghi', 'Gohir.D11G085200' => 'ghi', 'Gohir.D11G346400' => 'ghi', 'Gohir.D12G104800' => 'ghi', 'Gorai.001G151300' => 'gra', 'Gorai.001G174100' => 'gra', 'Gorai.002G257000' => 'gra', 'Gorai.004G202600' => 'gra', 'Gorai.007G090900' => 'gra', 'Gorai.007G376700' => 'gra', 'Gorai.008G114100' => 'gra', 'Gorai.011G237900' => 'gra', 'GSVIVG01005450001' => 'vvi', 'GSVIVG01016232001' => 'vvi', 'GSVIVG01026157001' => 'vvi', 'GSVIVG01027419001' => 'vvi', 'GSVIVG01027631001' => 'vvi', 'GSVIVG01034143001' => 'vvi', 'HanXRQChr03g0093921' => 'han', 'HanXRQChr04g0120001' => 'han', 'HanXRQChr04g0122561' => 'han', 'HanXRQChr09g0246851' => 'han', 'HanXRQChr10g0293311' => 'han', 'HanXRQChr13g0425231' => 'han', 'HanXRQChr16g0532571' => 'han', 'Haze_09050' => 'cav', 'Haze_15715' => 'cav', 'Haze_15716' => 'cav', 'Haze_16803' => 'cav', 'Haze_16850' => 'cav', 'Hma1.2p1_0301F.1_g118655' => 'hma', 'Hma1.2p1_0309F.1_g120590' => 'hma', 'Hma1.2p1_0936F.1_g238900' => 'hma', 'Hma1.2p1_3552F.1_g336740' => 'hma', 'HPP92_003520' => 'vpl', 'HPP92_006628' => 'vpl', 'HPP92_006645' => 'vpl', 'HPP92_014669' => 'vpl', 'HPP92_015077' => 'vpl', 'Hund16742' => 'sun', 'Hund17022' => 'sun', 'Lalb_Chr02g0152131' => 'lal', 'Lalb_Chr05g0225371' => 'lal', 'Lalb_Chr07g0189841' => 'lal', 'Lalb_Chr07g0192961' => 'lal', 'Lalb_Chr12g0208221' => 'lal', 'Lalb_Chr13g0291211' => 'lal', 'Lalb_Chr13g0291781' => 'lal', 'Lalb_Chr18g0044651' => 'lal', 'Lalb_Chr21g0313731' => 'lal', 'Lj1g0022533' => 'lja', 'Lj2A18T50' => 'lonja', 'Lj2A92G93' => 'lonja', 'Lj3A965T73' => 'lonja', 'Lj3g0000673' => 'lja', 'Lj3g0002666' => 'lja', 'Lj4g0016985' => 'lja', 'Lj5g0003625' => 'lja', 'Lj7A529G36' => 'lonja', 'Lj9A569T49' => 'lonja', 'Lj9A604T63' => 'lonja', 'Lsat_1_v5_gn_3_132060' => 'lsa', 'Lsat_1_v5_gn_4_68941' => 'lsa', 'Lsat_1_v5_gn_5_95580' => 'lsa', 'Lsat_1_v5_gn_7_161' => 'lsa', 'Lsat_1_v5_gn_7_7041' => 'lsa', 'Lsat_1_v5_gn_9_33481' => 'lsa', 'Lsat_1_v5_gn_9_68260' => 'lsa', 'Manes.01G073100' => 'mes', 'Manes.01G266300' => 'mes', 'Manes.02G033300' => 'mes', 'Manes.05G017900' => 'mes', 'Manes.05G046100' => 'mes', 'Manes.08G080900' => 'mes', 'Manes.10G049400' => 'mes', 'Mapoly0009s0186' => 'mpo', 'Mapoly0036s0118' => 'mpo', 'Mapoly0101s0046' => 'mpo', 'MBI04_g30218_MAGBIO' => 'mbi', 'MBI04_g35564_MAGBIO' => 'mbi', 'MBI12_g34011_MAGBIO' => 'mbi', 'MBI14_g04655_MAGBIO' => 'mbi', 'MCO07G653' => 'mco', 'MCO10G173' => 'mco', 'MD01G1087100' => 'mdo', 'MD01G1104200' => 'mdo', 'MD02G1205100' => 'mdo', 'MD04G1079200' => 'mdo', 'MD04G1131400' => 'mdo', 'MD07G1121600' => 'mdo', 'MD07G1157300' => 'mdo', 'MD07G1171000' => 'mdo', 'MD12G1144500' => 'mdo', 'Medtr1g094610' => 'mtr', 'Medtr4g021795' => 'mtr', 'Medtr4g023760' => 'mtr', 'Medtr7g118050' => 'mtr', 'MELO3C005582.2' => 'cme', 'MELO3C005989.2' => 'cme', 'MELO3C006192.2' => 'cme', 'MELO3C009248.2' => 'cme', 'MELO3C019817.2' => 'cme', 'Migut.B01625' => 'egut', 'Migut.B01915' => 'egut', 'Migut.F01721' => 'egut', 'Migut.J00314' => 'egut', 'MSTRG.20742' => 'ama', 'MSTRG.8134' => 'ama', 'Nitab4.5_0000096g0010' => 'nta', 'Nitab4.5_0000202g0030' => 'nta', 'Nitab4.5_0000216g0370' => 'nta', 'Nitab4.5_0000457g0230' => 'nta', 'Nitab4.5_0001702g0170' => 'nta', 'Nitab4.5_0003607g0010' => 'nta', 'Nitab4.5_0004917g0020' => 'nta', 'Nitab4.5_0007059g0010' => 'nta', 'Nitab4.5_0007184g0010' => 'nta', 'Nitab4.5_0007346g0020' => 'nta', 'Nn1g00410' => 'nnu', 'Nn1g01252' => 'nnu', 'Nn2g11168' => 'nnu', 'Nn2g13403' => 'nnu', 'Nn2g13760' => 'nnu', 'Nn4g26380' => 'nnu', 'Oeu000806.2' => 'oeu', 'Oeu005788.1' => 'oeu', 'Oeu006900.3' => 'oeu', 'Oeu007797.1' => 'oeu', 'Oeu011932.1' => 'oeu', 'Oeu022739.1' => 'oeu', 'Oeu037918.1' => 'oeu', 'Oeu055490.2' => 'oeu', 'Os01g0844400' => 'osa', 'Os02g0819100' => 'osa', 'Os03g0804300' => 'osa', 'Os05g0458000' => 'osa', 'Os07g0467800' => 'osa', 'Os12g0602200' => 'osa', 'Peaxi162Scf00013g03444' => 'pax', 'Peaxi162Scf00094g01120' => 'pax', 'Peaxi162Scf00191g01211' => 'pax', 'Peaxi162Scf00238g01110' => 'pax', 'Peaxi162Scf00330g00719' => 'pax', 'Peaxi162Scf00627g00018' => 'pax', 'PGR031G2686' => 'pgr', 'PGR042G0809' => 'pgr', 'PGR142G0193' => 'pgr', 'PGSC0003DMG400011066' => 'stu', 'PGSC0003DMG400012041' => 'stu', 'PGSC0003DMG400013678' => 'stu', 'PGSC0003DMG400023477' => 'stu', 'PGSC0003DMG400025956' => 'stu', 'PGSC0003DMG401019151' => 'stu', 'Phvul.006G116400' => 'pvu', 'Phvul.007G097300' => 'pvu', 'Phvul.010G015000' => 'pvu', 'Phvul.010G083900' => 'pvu', 'Potri.001G117100' => 'ptr', 'Potri.002G147300' => 'ptr', 'Potri.003G115600' => 'ptr', 'Potri.006G087400' => 'ptr', 'Potri.010G226100' => 'ptr', 'Potri.014G069200' => 'ptr', 'Potri.014G104000' => 'ptr', 'Potri.016G100200' => 'ptr', 'Pp3c10_20450' => 'ppa', 'Pp3c1_42400' => 'ppa', 'Pp3c3_24390' => 'ppa', 'Pp3c3_2860' => 'ppa', 'PRCOL_00003193' => 'pco', 'Prupe.2G144500' => 'ppe', 'Prupe.2G195700' => 'ppe', 'Prupe.2G209800' => 'ppe', 'Prupe.5G080000' => 'ppe', 'Prupe.6G257900' => 'ppe', 'Psat3g001160' => 'psa', 'Psat6g181880' => 'psa', 'Psat7g233720' => 'psa', 'PSO063G7587' => 'pso', 'PSO339G2145' => 'pso', 'PSO339G3369' => 'pso', 'PSO478G2747' => 'pso', 'PSO513G0140' => 'pso', 'PSO782G1614' => 'pso', 'PSO782G4889' => 'pso', 'PSO782G5485' => 'pso', 'PSO801G0241' => 'pso', 'QL07p048854' => 'qlo', 'QL08p046745' => 'qlo', 'QL08p052606' => 'qlo', 'QL08p053414' => 'qlo', 'QL08p054868' => 'qlo', 'RcHm_v2.0_Chr1g0350251' => 'rch', 'RcHm_v2.0_Chr1g0360851' => 'rch', 'RcHm_v2.0_Chr1g0362791' => 'rch', 'RcHm_v2.0_Chr3g0466281' => 'rch', 'RcHm_v2.0_Chr7g0201481' => 'rch', 'Rhsim01G0148600' => 'rsi', 'Rhsim05G0194400' => 'rsi', 'Rhsim07G0000700' => 'rsi', 'Rhsim07G0000800' => 'rsi', 'Rhsim07G0027900' => 'rsi', 'Rhsim09G0149500' => 'rsi', 'RhsimUnG0186900' => 'rsi', 'Sabra01G0089900' => 'sbr', 'Sabra02G0114700' => 'sbr', 'Sabra02G0116300' => 'sbr', 'Sabra03G0080100' => 'sbr', 'Sabra08G0024300' => 'sbr', 'Sabra10G0174300' => 'sbr', 'Sabra14G0048900' => 'sbr', 'Sabra14G0076500' => 'sbr', 'SalBow5G2513' => 'sbo', 'Sc01g0002300' => 'sci', 'Sc01g0004450' => 'sci', 'Sc06g0001680' => 'sci', 'Sc23g0003580' => 'sci', 'Sed0000913' => 'sed', 'Sed0001655' => 'sed', 'Sed0007745' => 'sed', 'Sed0010951' => 'sed', 'Sed0017599' => 'sed', 'Sed0021405' => 'sed', 'Sed0022810' => 'sed', 'SEGI_07099' => 'sgi', 'SEGI_11931' => 'sgi', 'SEGI_13187' => 'sgi', 'SEGI_29958' => 'sgi', 'SEGI_36351' => 'sgi', 'SGA_v2.0_scaffold126G33770' => 'sas', 'SGA_v2.0_scaffold153G37003' => 'sas', 'SGA_v2.0_scaffold2G01359' => 'sas', 'SGA_v2.0_scaffold5G03064' => 'sas', 'SGA_v2.0_scaffold95G28903' => 'sas', 'SHI12701' => 'shi', 'SHI26410' => 'shi', 'SHI38997' => 'shi', 'SHI53759' => 'shi', 'SHI53886' => 'shi', 'SHI54714' => 'shi', 'SMO011G0041' => 'smo', 'SMO146G0251' => 'smo', 'SMO160G0004' => 'smo', 'SMO174G0057' => 'smo', 'SMO244G0089' => 'smo', 'SMO296G0011' => 'smo', 'Solyc01g091280.3' => 'sly', 'Solyc05g047610.3' => 'sly', 'Solyc05g047640.3' => 'sly', 'Solyc05g055630.3' => 'sly', 'Solyc10g018160.2' => 'sly', 'Solyc10g084820.2' => 'sly', 'Solyc10g086565.2' => 'sly', 'Sopen01g037030' => 'spe', 'Sopen05g027920' => 'spe', 'Sopen05g034070' => 'spe', 'Sopen10g007260' => 'spe', 'Sopen10g034260' => 'spe', 'Sopen10g035950' => 'spe', 'Sp3g07710' => 'spa', 'Sp4g27420' => 'spa', 'Sp5g02450' => 'spa', 'Sp6g01280' => 'spa', 'Sp6g38480' => 'spa', 'Sp7g20780' => 'spa', 'TAR374G1413' => 'tar', 'TAR623G1777' => 'tar', 'TAR629G2370' => 'tar', 'TAR633G1759' => 'tar', 'TAR636G3387' => 'tar', 'THA.LOC104802447' => 'tha', 'THA.LOC104813916' => 'tha', 'THA.LOC104816423' => 'tha', 'THA.LOC104817246' => 'tha', 'THA.LOC104825895' => 'tha', 'Thecc.01G335200' => 'tca', 'Thecc.01G377400' => 'tca', 'Thecc.03G262200' => 'tca', 'Thecc.05G036800' => 'tca', 'Thecc.10G080500' => 'tca', 'Thecc.10G080800' => 'tca', 'Thhalv10001560m.g' => 'esa', 'Thhalv10006120m.g' => 'esa', 'Thhalv10014375m.g' => 'esa', 'Thhalv10021264m.g' => 'esa', 'Thhalv10028856m.g' => 'esa', 'TPR.G1914' => 'tpr', 'TPR.G4757' => 'tpr', 'TPR.G5595' => 'tpr', 'TWI14G0952' => 'twi', 'TWI14G1307' => 'twi', 'TWI38G2143' => 'twi', 'TWI59G0826' => 'twi', 'TWI77G0527' => 'twi', 'TWI81G0150' => 'twi', 'unitig_21.g21018' => 'ugi', 'unitig_26.g9725' => 'ugi', 'unitig_744.g24653' => 'ugi', 'unitig_749.g13778' => 'ugi', 'unitig_899.g15035' => 'ugi', 'vmacro04296' => 'vma', 'vmacro04852' => 'vma', 'vmacro13404' => 'vma', 'vmacro20169' => 'vma', 'vmacro21014' => 'vma', 'VMungo0331G0237' => 'vmu', 'VMungo0331G0706' => 'vmu', 'VMungo0331G1361' => 'vmu', 'VMungo0331G1489' => 'vmu', 'VMungo0540G1037' => 'vmu', 'VMungo0720G2487' => 'vmu', 'VMungo0720G2721' => 'vmu', 'Zm00001eb086860' => 'zma', 'Zm00001eb104760' => 'zma', 'Zm00001eb148220' => 'zma', 'Zm00001eb259030' => 'zma', 'Zm00001eb289590' => 'zma', 'Zm00001eb420150' => 'zma' ) $gf_id = 'HOM05D000968' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000968' ) $data_identifier = 'HOM05D000968' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 19, 'bol' => (int) 9, 'bra' => (int) 12, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 5, 'ccan' => (int) 7, 'cde' => (int) 5, 'cfa' => (int) 8, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 4, 'dca' => (int) 5, 'din' => (int) 5, 'dzi' => (int) 12, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 25, 'fve' => (int) 5, 'gma' => (int) 9, 'ghi' => (int) 18, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 7, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 5, 'sun' => (int) 2, 'lal' => (int) 9, 'lja' => (int) 5, 'lonja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 9, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 2, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 3, 'stu' => (int) 6, 'pvu' => (int) 4, 'ptr' => (int) 8, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 3, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 1, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 5, 'sas' => (int) 5, 'shi' => (int) 6, 'smo' => (int) 6, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 3, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420150' $species_info = array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ) $local_species = 'cqu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000968', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p31690' => 'bna', 'A03p36040' => 'bna', 'A03p53730' => 'bna', 'A04p01410' => 'bna', 'A05p05420' => 'bna', 'A05p39630' => 'bna', 'A05p39640' => 'bna', 'A09p00970' => 'bna', 'A09p53060' => 'bna', 'A10p31890' => 'bna', 'Aa31LG10G15040' => 'aar', 'Aa31LG1G21090' => 'aar', 'Aa31LG1G26900' => 'aar', 'Aa31LG3G1820' => 'aar', 'Aa31LG5G1100' => 'aar', 'Aa31LG6G4740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2265' => 'aag', 'Actinidia07998' => 'ach', 'Actinidia11266' => 'ach', 'Actinidia12682' => 'ach', 'Actinidia26479' => 'ach', 'Actinidia31406' => 'ach', 'Actinidia32437' => 'ach', 'Actinidia38862' => 'ach', 'Ah.05g174230' => 'amhyb', 'Ah.05g179070' => 'amhyb', 'Ah.05g179090' => 'amhyb', 'Ah.12g059950' => 'amhyb', 'AL3G20480' => 'aly', 'AL4G44520' => 'aly', 'AL5G43110' => 'aly', 'AL6G13890' => 'aly', 'AL6G52620' => 'aly', 'AL7G30830' => 'aly', 'Aqoxy1G00899' => 'aox', 'Aqoxy5G04333' => 'aox', 'Aqoxy7G00641' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3IZ0NN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4EF6AW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W9P8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79GA3M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C43NQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFCU6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G95YVJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCHK29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LU1UG8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX91RN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGB4B1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8DA0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9H7JI' => 'arhy', 'AT3G09320' => 'ath', 'AT3G60800' => 'ath', 'AT4G00840' => 'ath', 'AT4G22750' => 'ath', 'AT5G04270' => 'ath', 'ATR0090G003' => 'atr', 'ATR0559G349' => 'atr', 'ATR0680G261' => 'atr', 'ATR0810G048' => 'atr', 'Atru.chr12.831' => 'acertr', 'Atru.chr5.303' => 'acertr', 'Atru.chr5.748' => 'acertr', 'Atru.chr8.1999' => 'acertr', 'Atru.chr9.1436' => 'acertr', 'AUR62004211' => 'cqu', 'AUR62004548' => 'cqu', 'AUR62013637' => 'cqu', 'AUR62022662' => 'cqu', 'AUR62025777' => 'cqu', 'AUR62042386' => 'cqu', 'BcaB01g02310' => 'bca', 'BcaB01g06062' => 'bca', 'BcaB02g08975' => 'bca', 'BcaB02g08980' => 'bca', 'BcaC01g04228' => 'bca', 'BcaC01g06830' => 'bca', 'BcaC02g10186' => 'bca', 'BcaC02g12214' => 'bca', 'BcaC04g24101' => 'bca', 'BcaC05g29520' => 'bca', 'BcaC05g29661' => 'bca', 'BcaC06g32130' => 'bca', 'BcaC06g32131' => 'bca', 'BcaC07g40601' => 'bca', 'BcaC07g42641' => 'bca', 'BcaNung01038' => 'bca', 'BcaNung01676' => 'bca', 'BcaNung02480' => 'bca', 'BcaNung07376' => 'bca', 'BolC3t16146H' => 'bol', 'BolC3t16637H' => 'bol', 'BolC4t22257H' => 'bol', 'BolC4t24728H' => 'bol', 'BolC5t34517H' => 'bol', 'BolC7t45703H' => 'bol', 'BolC8t51166H' => 'bol', 'BolC9t53038H' => 'bol', 'BolC9t60000H' => 'bol', 'BraA01t01345Z' => 'bra', 'BraA01t01346Z' => 'bra', 'BraA01t01348Z' => 'bra', 'BraA03t12347Z' => 'bra', 'BraA03t12775Z' => 'bra', 'BraA03t14439Z' => 'bra', 'BraA04t15860Z' => 'bra', 'BraA05t19511Z' => 'bra', 'BraA05t22746Z' => 'bra', 'BraA09t35767Z' => 'bra', 'BraA09t40732Z' => 'bra', 'BraA10t45233Z' => 'bra', 'C03p38720' => 'bna', 'C03p43680' => 'bna', 'C04p06350' => 'bna', 'C04p31800' => 'bna', 'C05p58680' => 'bna', 'C07p52110' => 'bna', 'C08p35760' => 'bna', 'C09p01050' => 'bna', 'C09p72600' => 'bna', 'CAN.G106.2' => 'can', 'CAN.G1482.1' => 'can', 'CAN.G324.12' => 'can', 'CAN.G388.20' => 'can', 'CAN.G412.7' => 'can', 'CAN.G694.32' => 'can', 'CAN.G92.12' => 'can', 'CANSAT11G2353' => 'cansat', 'CANSAT21G1398' => 'cansat', 'CANSAT56G2456' => 'cansat', 'CANSAT56G3031' => 'cansat', 'CANSAT56G4539' => 'cansat', 'CARHR083680' => 'chi', 'CARHR171190' => 'chi', 'CARHR209010' => 'chi', 'CARHR229680' => 'chi', 'CARHR249490' => 'chi', 'Carub.0003s0844' => 'cru', 'Carub.0005s2755' => 'cru', 'Carub.0006s0322' => 'cru', 'Carub.0006s3586' => 'cru', 'Carub.0007s1855' => 'cru', 'Ca_07808_v3' => 'car', 'Ca_09535_v3' => 'car', 'Ca_10548_v3' => 'car', 'Ca_19913_v3' => 'car', 'Ca_19916_v3' => 'car', 'Ca_19975_v3' => 'car', 'CBR_g22876' => 'cbr', 'CBR_g22879' => 'cbr', 'CBR_g38491' => 'cbr', 'CBR_g54185' => 'cbr', 'CBR_g54190' => 'cbr', 'Cc02_g11020' => 'ccan', 'Cc02_g23920' => 'ccan', 'Cc02_g39860' => 'ccan', 'Cc02_g39870' => 'ccan', 'Cc03_g06760' => 'ccan', 'Cc06_g02450' => 'ccan', 'Cc09_g09450' => 'ccan', 'CDE02G1959' => 'cde', 'CDE04G0600' => 'cde', 'CDE07G1996' => 'cde', 'CDE07G2078' => 'cde', 'CDE11G0611' => 'cde', 'Cfa001683' => 'cfa', 'Cfa001734' => 'cfa', 'Cfa001737' => 'cfa', 'Cfa003751' => 'cfa', 'Cfa012019' => 'cfa', 'Cfa017353' => 'cfa', 'Cfa017732' => 'cfa', 'Cfa022464' => 'cfa', 'Ciclev10012400m.g' => 'ccl', 'Ciclev10021242m.g' => 'ccl', 'Ciclev10021302m.g' => 'ccl', 'Ciclev10021463m.g' => 'ccl', 'Ciclev10032359m.g' => 'ccl', 'CiPaw.01G081000' => 'cil', 'CiPaw.01G262500' => 'cil', 'CiPaw.01G269800' => 'cil', 'CiPaw.02G168400' => 'cil', 'CiPaw.05G119500' => 'cil', 'CiPaw.11G147300' => 'cil', 'ClCG01G003630' => 'cla', 'ClCG05G000510' => 'cla', 'ClCG05G002300' => 'cla', 'ClCG08G007650' => 'cla', 'ClCG10G021250' => 'cla', 'COL.COLO4_06218' => 'col', 'COL.COLO4_12538' => 'col', 'COL.COLO4_14775' => 'col', 'COL.COLO4_23875' => 'col', 'Cpa.g.sc141.16' => 'cpa', 'Cpa.g.sc169.16' => 'cpa', 'Cpa.g.sc244.4' => 'cpa', 'Cpa.g.sc244.5' => 'cpa', 'Cpa.g.sc29.87' => 'cpa', 'Cpa.g.sc53.115' => 'cpa', 'Cre03.g207502' => 'cre', 'Cre06.g277000' => 'cre', 'Cre09.g394050' => 'cre', 'CsaV3_3G007680' => 'csa', 'CsaV3_3G009710' => 'csa', 'CsaV3_3G034790' => 'csa', 'CsaV3_5G003750' => 'csa', 'CsaV3_6G036620' => 'csa', 'CSS0002288' => 'camsi', 'CSS0011250' => 'camsi', 'CSS0021619' => 'camsi', 'CSS0046701' => 'camsi', 'DCAR_006420' => 'dca', 'DCAR_006865' => 'dca', 'DCAR_008558' => 'dca', 'DCAR_028754' => 'dca', 'DCAR_028755' => 'dca', 'Dinv31218' => 'din', 'Dinv32371' => 'din', 'Dinv34250' => 'din', 'Dinv37156' => 'din', 'Dinv43704' => 'din', 'Duzib093G1811' => 'dzi', 'Duzib106G1622' => 'dzi', 'Duzib114G0504' => 'dzi', 'Duzib128G0338' => 'dzi', 'Duzib128G1577' => 'dzi', 'Duzib133G0104' => 'dzi', 'Duzib133G1080' => 'dzi', 'Duzib138G0324' => 'dzi', 'Duzib138G0394' => 'dzi', 'Duzib205G0122' => 'dzi', 'Duzib268G1020' => 'dzi', 'Duzib268G1359' => 'dzi', 'ECA232G3929' => 'eca', 'ECA236G2210' => 'eca', 'ECA236G2287' => 'eca', 'ECA240G4568' => 'eca', 'ECA247G0894' => 'eca', 'EL10Ac1g00200' => 'bvu', 'EL10Ac1g00886' => 'bvu', 'EL10As1g23091' => 'bvu', 'EL10As1g23092' => 'bvu', 'Eucgr.A01284' => 'egr', 'Eucgr.A01285' => 'egr', 'Eucgr.D02456' => 'egr', 'Eucgr.E00018' => 'egr', 'Eucgr.E01439' => 'egr', 'Eucgr.G02859' => 'egr', 'FAN01G0168' => 'fan', 'FAN01G0453' => 'fan', 'FAN01G2761' => 'fan', 'FAN02G1239' => 'fan', 'FAN03G0645' => 'fan', 'FAN03G2707' => 'fan', 'FAN03G2978' => 'fan', 'FAN04G0227' => 'fan', 'FAN06G0091' => 'fan', 'FAN06G1418' => 'fan', 'FAN06G1512' => 'fan', 'FAN06G1986' => 'fan', 'FAN06G2905' => 'fan', 'FAN06G4325' => 'fan', 'FAN08G0033' => 'fan', 'FAN09G0642' => 'fan', 'FAN10G1763' => 'fan', 'FAN10G2026' => 'fan', 'FAN10G2513' => 'fan', 'FAN10G3402' => 'fan', 'FAN10G3564' => 'fan', 'FAN10G3987' => 'fan', 'FAN13G1490' => 'fan', 'FAN14G5857' => 'fan', 'FAN18G1188' => 'fan', 'FvH4_5g00750' => 'fve', 'FvH4_6g13410' => 'fve', 'FvH4_7g11740' => 'fve', 'FvH4_7g17410' => 'fve', 'FvH4_7g18860' => 'fve', 'Glyma.01G099100' => 'gma', 'Glyma.01G142300' => 'gma', 'Glyma.03G025500' => 'gma', 'Glyma.03G069700' => 'gma', 'Glyma.03G260000' => 'gma', 'Glyma.09G269800' => 'gma', 'Glyma.10G208700' => 'gma', 'Glyma.18G220400' => 'gma', 'Glyma.20G182000' => 'gma', 'Gohir.A01G221726' => 'ghi', 'Gohir.A07G134600' => 'ghi', 'Gohir.A07G146000' => 'ghi', 'Gohir.A08G173900' => 'ghi', 'Gohir.A09G194900' => 'ghi', 'Gohir.A10G204100' => 'ghi', 'Gohir.A11G080600' => 'ghi', 'Gohir.A11G327500' => 'ghi', 'Gohir.A12G101800' => 'ghi', 'Gohir.D01G211200' => 'ghi', 'Gohir.D07G139200' => 'ghi', 'Gohir.D07G152100' => 'ghi', 'Gohir.D08G192600' => 'ghi', 'Gohir.D09G189200' => 'ghi', 'Gohir.D10G212000' => 'ghi', 'Gohir.D11G085200' => 'ghi', 'Gohir.D11G346400' => 'ghi', 'Gohir.D12G104800' => 'ghi', 'Gorai.001G151300' => 'gra', 'Gorai.001G174100' => 'gra', 'Gorai.002G257000' => 'gra', 'Gorai.004G202600' => 'gra', 'Gorai.007G090900' => 'gra', 'Gorai.007G376700' => 'gra', 'Gorai.008G114100' => 'gra', 'Gorai.011G237900' => 'gra', 'GSVIVG01005450001' => 'vvi', 'GSVIVG01016232001' => 'vvi', 'GSVIVG01026157001' => 'vvi', 'GSVIVG01027419001' => 'vvi', 'GSVIVG01027631001' => 'vvi', 'GSVIVG01034143001' => 'vvi', 'HanXRQChr03g0093921' => 'han', 'HanXRQChr04g0120001' => 'han', 'HanXRQChr04g0122561' => 'han', 'HanXRQChr09g0246851' => 'han', 'HanXRQChr10g0293311' => 'han', 'HanXRQChr13g0425231' => 'han', 'HanXRQChr16g0532571' => 'han', 'Haze_09050' => 'cav', 'Haze_15715' => 'cav', 'Haze_15716' => 'cav', 'Haze_16803' => 'cav', 'Haze_16850' => 'cav', 'Hma1.2p1_0301F.1_g118655' => 'hma', 'Hma1.2p1_0309F.1_g120590' => 'hma', 'Hma1.2p1_0936F.1_g238900' => 'hma', 'Hma1.2p1_3552F.1_g336740' => 'hma', 'HPP92_003520' => 'vpl', 'HPP92_006628' => 'vpl', 'HPP92_006645' => 'vpl', 'HPP92_014669' => 'vpl', 'HPP92_015077' => 'vpl', 'Hund16742' => 'sun', 'Hund17022' => 'sun', 'Lalb_Chr02g0152131' => 'lal', 'Lalb_Chr05g0225371' => 'lal', 'Lalb_Chr07g0189841' => 'lal', 'Lalb_Chr07g0192961' => 'lal', 'Lalb_Chr12g0208221' => 'lal', 'Lalb_Chr13g0291211' => 'lal', 'Lalb_Chr13g0291781' => 'lal', 'Lalb_Chr18g0044651' => 'lal', 'Lalb_Chr21g0313731' => 'lal', 'Lj1g0022533' => 'lja', 'Lj2A18T50' => 'lonja', 'Lj2A92G93' => 'lonja', 'Lj3A965T73' => 'lonja', 'Lj3g0000673' => 'lja', 'Lj3g0002666' => 'lja', 'Lj4g0016985' => 'lja', 'Lj5g0003625' => 'lja', 'Lj7A529G36' => 'lonja', 'Lj9A569T49' => 'lonja', 'Lj9A604T63' => 'lonja', 'Lsat_1_v5_gn_3_132060' => 'lsa', 'Lsat_1_v5_gn_4_68941' => 'lsa', 'Lsat_1_v5_gn_5_95580' => 'lsa', 'Lsat_1_v5_gn_7_161' => 'lsa', 'Lsat_1_v5_gn_7_7041' => 'lsa', 'Lsat_1_v5_gn_9_33481' => 'lsa', 'Lsat_1_v5_gn_9_68260' => 'lsa', 'Manes.01G073100' => 'mes', 'Manes.01G266300' => 'mes', 'Manes.02G033300' => 'mes', 'Manes.05G017900' => 'mes', 'Manes.05G046100' => 'mes', 'Manes.08G080900' => 'mes', 'Manes.10G049400' => 'mes', 'Mapoly0009s0186' => 'mpo', 'Mapoly0036s0118' => 'mpo', 'Mapoly0101s0046' => 'mpo', 'MBI04_g30218_MAGBIO' => 'mbi', 'MBI04_g35564_MAGBIO' => 'mbi', 'MBI12_g34011_MAGBIO' => 'mbi', 'MBI14_g04655_MAGBIO' => 'mbi', 'MCO07G653' => 'mco', 'MCO10G173' => 'mco', 'MD01G1087100' => 'mdo', 'MD01G1104200' => 'mdo', 'MD02G1205100' => 'mdo', 'MD04G1079200' => 'mdo', 'MD04G1131400' => 'mdo', 'MD07G1121600' => 'mdo', 'MD07G1157300' => 'mdo', 'MD07G1171000' => 'mdo', 'MD12G1144500' => 'mdo', 'Medtr1g094610' => 'mtr', 'Medtr4g021795' => 'mtr', 'Medtr4g023760' => 'mtr', 'Medtr7g118050' => 'mtr', 'MELO3C005582.2' => 'cme', 'MELO3C005989.2' => 'cme', 'MELO3C006192.2' => 'cme', 'MELO3C009248.2' => 'cme', 'MELO3C019817.2' => 'cme', 'Migut.B01625' => 'egut', 'Migut.B01915' => 'egut', 'Migut.F01721' => 'egut', 'Migut.J00314' => 'egut', 'MSTRG.20742' => 'ama', 'MSTRG.8134' => 'ama', 'Nitab4.5_0000096g0010' => 'nta', 'Nitab4.5_0000202g0030' => 'nta', 'Nitab4.5_0000216g0370' => 'nta', 'Nitab4.5_0000457g0230' => 'nta', 'Nitab4.5_0001702g0170' => 'nta', 'Nitab4.5_0003607g0010' => 'nta', 'Nitab4.5_0004917g0020' => 'nta', 'Nitab4.5_0007059g0010' => 'nta', 'Nitab4.5_0007184g0010' => 'nta', 'Nitab4.5_0007346g0020' => 'nta', 'Nn1g00410' => 'nnu', 'Nn1g01252' => 'nnu', 'Nn2g11168' => 'nnu', 'Nn2g13403' => 'nnu', 'Nn2g13760' => 'nnu', 'Nn4g26380' => 'nnu', 'Oeu000806.2' => 'oeu', 'Oeu005788.1' => 'oeu', 'Oeu006900.3' => 'oeu', 'Oeu007797.1' => 'oeu', 'Oeu011932.1' => 'oeu', 'Oeu022739.1' => 'oeu', 'Oeu037918.1' => 'oeu', 'Oeu055490.2' => 'oeu', 'Os01g0844400' => 'osa', 'Os02g0819100' => 'osa', 'Os03g0804300' => 'osa', 'Os05g0458000' => 'osa', 'Os07g0467800' => 'osa', 'Os12g0602200' => 'osa', 'Peaxi162Scf00013g03444' => 'pax', 'Peaxi162Scf00094g01120' => 'pax', 'Peaxi162Scf00191g01211' => 'pax', 'Peaxi162Scf00238g01110' => 'pax', 'Peaxi162Scf00330g00719' => 'pax', 'Peaxi162Scf00627g00018' => 'pax', 'PGR031G2686' => 'pgr', 'PGR042G0809' => 'pgr', 'PGR142G0193' => 'pgr', 'PGSC0003DMG400011066' => 'stu', 'PGSC0003DMG400012041' => 'stu', 'PGSC0003DMG400013678' => 'stu', 'PGSC0003DMG400023477' => 'stu', 'PGSC0003DMG400025956' => 'stu', 'PGSC0003DMG401019151' => 'stu', 'Phvul.006G116400' => 'pvu', 'Phvul.007G097300' => 'pvu', 'Phvul.010G015000' => 'pvu', 'Phvul.010G083900' => 'pvu', 'Potri.001G117100' => 'ptr', 'Potri.002G147300' => 'ptr', 'Potri.003G115600' => 'ptr', 'Potri.006G087400' => 'ptr', 'Potri.010G226100' => 'ptr', 'Potri.014G069200' => 'ptr', 'Potri.014G104000' => 'ptr', 'Potri.016G100200' => 'ptr', 'Pp3c10_20450' => 'ppa', 'Pp3c1_42400' => 'ppa', 'Pp3c3_24390' => 'ppa', 'Pp3c3_2860' => 'ppa', 'PRCOL_00003193' => 'pco', 'Prupe.2G144500' => 'ppe', 'Prupe.2G195700' => 'ppe', 'Prupe.2G209800' => 'ppe', 'Prupe.5G080000' => 'ppe', 'Prupe.6G257900' => 'ppe', 'Psat3g001160' => 'psa', 'Psat6g181880' => 'psa', 'Psat7g233720' => 'psa', 'PSO063G7587' => 'pso', 'PSO339G2145' => 'pso', 'PSO339G3369' => 'pso', 'PSO478G2747' => 'pso', 'PSO513G0140' => 'pso', 'PSO782G1614' => 'pso', 'PSO782G4889' => 'pso', 'PSO782G5485' => 'pso', 'PSO801G0241' => 'pso', 'QL07p048854' => 'qlo', 'QL08p046745' => 'qlo', 'QL08p052606' => 'qlo', 'QL08p053414' => 'qlo', 'QL08p054868' => 'qlo', 'RcHm_v2.0_Chr1g0350251' => 'rch', 'RcHm_v2.0_Chr1g0360851' => 'rch', 'RcHm_v2.0_Chr1g0362791' => 'rch', 'RcHm_v2.0_Chr3g0466281' => 'rch', 'RcHm_v2.0_Chr7g0201481' => 'rch', 'Rhsim01G0148600' => 'rsi', 'Rhsim05G0194400' => 'rsi', 'Rhsim07G0000700' => 'rsi', 'Rhsim07G0000800' => 'rsi', 'Rhsim07G0027900' => 'rsi', 'Rhsim09G0149500' => 'rsi', 'RhsimUnG0186900' => 'rsi', 'Sabra01G0089900' => 'sbr', 'Sabra02G0114700' => 'sbr', 'Sabra02G0116300' => 'sbr', 'Sabra03G0080100' => 'sbr', 'Sabra08G0024300' => 'sbr', 'Sabra10G0174300' => 'sbr', 'Sabra14G0048900' => 'sbr', 'Sabra14G0076500' => 'sbr', 'SalBow5G2513' => 'sbo', 'Sc01g0002300' => 'sci', 'Sc01g0004450' => 'sci', 'Sc06g0001680' => 'sci', 'Sc23g0003580' => 'sci', 'Sed0000913' => 'sed', 'Sed0001655' => 'sed', 'Sed0007745' => 'sed', 'Sed0010951' => 'sed', 'Sed0017599' => 'sed', 'Sed0021405' => 'sed', 'Sed0022810' => 'sed', 'SEGI_07099' => 'sgi', 'SEGI_11931' => 'sgi', 'SEGI_13187' => 'sgi', 'SEGI_29958' => 'sgi', 'SEGI_36351' => 'sgi', 'SGA_v2.0_scaffold126G33770' => 'sas', 'SGA_v2.0_scaffold153G37003' => 'sas', 'SGA_v2.0_scaffold2G01359' => 'sas', 'SGA_v2.0_scaffold5G03064' => 'sas', 'SGA_v2.0_scaffold95G28903' => 'sas', 'SHI12701' => 'shi', 'SHI26410' => 'shi', 'SHI38997' => 'shi', 'SHI53759' => 'shi', 'SHI53886' => 'shi', 'SHI54714' => 'shi', 'SMO011G0041' => 'smo', 'SMO146G0251' => 'smo', 'SMO160G0004' => 'smo', 'SMO174G0057' => 'smo', 'SMO244G0089' => 'smo', 'SMO296G0011' => 'smo', 'Solyc01g091280.3' => 'sly', 'Solyc05g047610.3' => 'sly', 'Solyc05g047640.3' => 'sly', 'Solyc05g055630.3' => 'sly', 'Solyc10g018160.2' => 'sly', 'Solyc10g084820.2' => 'sly', 'Solyc10g086565.2' => 'sly', 'Sopen01g037030' => 'spe', 'Sopen05g027920' => 'spe', 'Sopen05g034070' => 'spe', 'Sopen10g007260' => 'spe', 'Sopen10g034260' => 'spe', 'Sopen10g035950' => 'spe', 'Sp3g07710' => 'spa', 'Sp4g27420' => 'spa', 'Sp5g02450' => 'spa', 'Sp6g01280' => 'spa', 'Sp6g38480' => 'spa', 'Sp7g20780' => 'spa', 'TAR374G1413' => 'tar', 'TAR623G1777' => 'tar', 'TAR629G2370' => 'tar', 'TAR633G1759' => 'tar', 'TAR636G3387' => 'tar', 'THA.LOC104802447' => 'tha', 'THA.LOC104813916' => 'tha', 'THA.LOC104816423' => 'tha', 'THA.LOC104817246' => 'tha', 'THA.LOC104825895' => 'tha', 'Thecc.01G335200' => 'tca', 'Thecc.01G377400' => 'tca', 'Thecc.03G262200' => 'tca', 'Thecc.05G036800' => 'tca', 'Thecc.10G080500' => 'tca', 'Thecc.10G080800' => 'tca', 'Thhalv10001560m.g' => 'esa', 'Thhalv10006120m.g' => 'esa', 'Thhalv10014375m.g' => 'esa', 'Thhalv10021264m.g' => 'esa', 'Thhalv10028856m.g' => 'esa', 'TPR.G1914' => 'tpr', 'TPR.G4757' => 'tpr', 'TPR.G5595' => 'tpr', 'TWI14G0952' => 'twi', 'TWI14G1307' => 'twi', 'TWI38G2143' => 'twi', 'TWI59G0826' => 'twi', 'TWI77G0527' => 'twi', 'TWI81G0150' => 'twi', 'unitig_21.g21018' => 'ugi', 'unitig_26.g9725' => 'ugi', 'unitig_744.g24653' => 'ugi', 'unitig_749.g13778' => 'ugi', 'unitig_899.g15035' => 'ugi', 'vmacro04296' => 'vma', 'vmacro04852' => 'vma', 'vmacro13404' => 'vma', 'vmacro20169' => 'vma', 'vmacro21014' => 'vma', 'VMungo0331G0237' => 'vmu', 'VMungo0331G0706' => 'vmu', 'VMungo0331G1361' => 'vmu', 'VMungo0331G1489' => 'vmu', 'VMungo0540G1037' => 'vmu', 'VMungo0720G2487' => 'vmu', 'VMungo0720G2721' => 'vmu', 'Zm00001eb086860' => 'zma', 'Zm00001eb104760' => 'zma', 'Zm00001eb148220' => 'zma', 'Zm00001eb259030' => 'zma', 'Zm00001eb289590' => 'zma', 'Zm00001eb420150' => 'zma' ), 'gf_id' => 'HOM05D000968', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000968' ), 'data_identifier' => 'HOM05D000968', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000968', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p31690' => 'bna', 'A03p36040' => 'bna', 'A03p53730' => 'bna', 'A04p01410' => 'bna', 'A05p05420' => 'bna', 'A05p39630' => 'bna', 'A05p39640' => 'bna', 'A09p00970' => 'bna', 'A09p53060' => 'bna', 'A10p31890' => 'bna', 'Aa31LG10G15040' => 'aar', 'Aa31LG1G21090' => 'aar', 'Aa31LG1G26900' => 'aar', 'Aa31LG3G1820' => 'aar', 'Aa31LG5G1100' => 'aar', 'Aa31LG6G4740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2265' => 'aag', 'Actinidia07998' => 'ach', 'Actinidia11266' => 'ach', 'Actinidia12682' => 'ach', 'Actinidia26479' => 'ach', 'Actinidia31406' => 'ach', 'Actinidia32437' => 'ach', 'Actinidia38862' => 'ach', 'Ah.05g174230' => 'amhyb', 'Ah.05g179070' => 'amhyb', 'Ah.05g179090' => 'amhyb', 'Ah.12g059950' => 'amhyb', 'AL3G20480' => 'aly', 'AL4G44520' => 'aly', 'AL5G43110' => 'aly', 'AL6G13890' => 'aly', 'AL6G52620' => 'aly', 'AL7G30830' => 'aly', 'Aqoxy1G00899' => 'aox', 'Aqoxy5G04333' => 'aox', 'Aqoxy7G00641' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3IZ0NN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4EF6AW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W9P8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79GA3M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C43NQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFCU6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G95YVJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCHK29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LU1UG8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX91RN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGB4B1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8DA0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9H7JI' => 'arhy', 'AT3G09320' => 'ath', 'AT3G60800' => 'ath', 'AT4G00840' => 'ath', 'AT4G22750' => 'ath', 'AT5G04270' => 'ath', 'ATR0090G003' => 'atr', 'ATR0559G349' => 'atr', 'ATR0680G261' => 'atr', 'ATR0810G048' => 'atr', 'Atru.chr12.831' => 'acertr', 'Atru.chr5.303' => 'acertr', 'Atru.chr5.748' => 'acertr', 'Atru.chr8.1999' => 'acertr', 'Atru.chr9.1436' => 'acertr', 'AUR62004211' => 'cqu', 'AUR62004548' => 'cqu', 'AUR62013637' => 'cqu', 'AUR62022662' => 'cqu', 'AUR62025777' => 'cqu', 'AUR62042386' => 'cqu', 'BcaB01g02310' => 'bca', 'BcaB01g06062' => 'bca', 'BcaB02g08975' => 'bca', 'BcaB02g08980' => 'bca', 'BcaC01g04228' => 'bca', 'BcaC01g06830' => 'bca', 'BcaC02g10186' => 'bca', 'BcaC02g12214' => 'bca', 'BcaC04g24101' => 'bca', 'BcaC05g29520' => 'bca', 'BcaC05g29661' => 'bca', 'BcaC06g32130' => 'bca', 'BcaC06g32131' => 'bca', 'BcaC07g40601' => 'bca', 'BcaC07g42641' => 'bca', 'BcaNung01038' => 'bca', 'BcaNung01676' => 'bca', 'BcaNung02480' => 'bca', 'BcaNung07376' => 'bca', 'BolC3t16146H' => 'bol', 'BolC3t16637H' => 'bol', 'BolC4t22257H' => 'bol', 'BolC4t24728H' => 'bol', 'BolC5t34517H' => 'bol', 'BolC7t45703H' => 'bol', 'BolC8t51166H' => 'bol', 'BolC9t53038H' => 'bol', 'BolC9t60000H' => 'bol', 'BraA01t01345Z' => 'bra', 'BraA01t01346Z' => 'bra', 'BraA01t01348Z' => 'bra', 'BraA03t12347Z' => 'bra', 'BraA03t12775Z' => 'bra', 'BraA03t14439Z' => 'bra', 'BraA04t15860Z' => 'bra', 'BraA05t19511Z' => 'bra', 'BraA05t22746Z' => 'bra', 'BraA09t35767Z' => 'bra', 'BraA09t40732Z' => 'bra', 'BraA10t45233Z' => 'bra', 'C03p38720' => 'bna', 'C03p43680' => 'bna', 'C04p06350' => 'bna', 'C04p31800' => 'bna', 'C05p58680' => 'bna', 'C07p52110' => 'bna', 'C08p35760' => 'bna', 'C09p01050' => 'bna', 'C09p72600' => 'bna', 'CAN.G106.2' => 'can', 'CAN.G1482.1' => 'can', 'CAN.G324.12' => 'can', 'CAN.G388.20' => 'can', 'CAN.G412.7' => 'can', 'CAN.G694.32' => 'can', 'CAN.G92.12' => 'can', 'CANSAT11G2353' => 'cansat', 'CANSAT21G1398' => 'cansat', 'CANSAT56G2456' => 'cansat', 'CANSAT56G3031' => 'cansat', 'CANSAT56G4539' => 'cansat', 'CARHR083680' => 'chi', 'CARHR171190' => 'chi', 'CARHR209010' => 'chi', 'CARHR229680' => 'chi', 'CARHR249490' => 'chi', 'Carub.0003s0844' => 'cru', 'Carub.0005s2755' => 'cru', 'Carub.0006s0322' => 'cru', 'Carub.0006s3586' => 'cru', 'Carub.0007s1855' => 'cru', 'Ca_07808_v3' => 'car', 'Ca_09535_v3' => 'car', 'Ca_10548_v3' => 'car', 'Ca_19913_v3' => 'car', 'Ca_19916_v3' => 'car', 'Ca_19975_v3' => 'car', 'CBR_g22876' => 'cbr', 'CBR_g22879' => 'cbr', 'CBR_g38491' => 'cbr', 'CBR_g54185' => 'cbr', 'CBR_g54190' => 'cbr', 'Cc02_g11020' => 'ccan', 'Cc02_g23920' => 'ccan', 'Cc02_g39860' => 'ccan', 'Cc02_g39870' => 'ccan', 'Cc03_g06760' => 'ccan', 'Cc06_g02450' => 'ccan', 'Cc09_g09450' => 'ccan', 'CDE02G1959' => 'cde', 'CDE04G0600' => 'cde', 'CDE07G1996' => 'cde', 'CDE07G2078' => 'cde', 'CDE11G0611' => 'cde', 'Cfa001683' => 'cfa', 'Cfa001734' => 'cfa', 'Cfa001737' => 'cfa', 'Cfa003751' => 'cfa', 'Cfa012019' => 'cfa', 'Cfa017353' => 'cfa', 'Cfa017732' => 'cfa', 'Cfa022464' => 'cfa', 'Ciclev10012400m.g' => 'ccl', 'Ciclev10021242m.g' => 'ccl', 'Ciclev10021302m.g' => 'ccl', 'Ciclev10021463m.g' => 'ccl', 'Ciclev10032359m.g' => 'ccl', 'CiPaw.01G081000' => 'cil', 'CiPaw.01G262500' => 'cil', 'CiPaw.01G269800' => 'cil', 'CiPaw.02G168400' => 'cil', 'CiPaw.05G119500' => 'cil', 'CiPaw.11G147300' => 'cil', 'ClCG01G003630' => 'cla', 'ClCG05G000510' => 'cla', 'ClCG05G002300' => 'cla', 'ClCG08G007650' => 'cla', 'ClCG10G021250' => 'cla', 'COL.COLO4_06218' => 'col', 'COL.COLO4_12538' => 'col', 'COL.COLO4_14775' => 'col', 'COL.COLO4_23875' => 'col', 'Cpa.g.sc141.16' => 'cpa', 'Cpa.g.sc169.16' => 'cpa', 'Cpa.g.sc244.4' => 'cpa', 'Cpa.g.sc244.5' => 'cpa', 'Cpa.g.sc29.87' => 'cpa', 'Cpa.g.sc53.115' => 'cpa', 'Cre03.g207502' => 'cre', 'Cre06.g277000' => 'cre', 'Cre09.g394050' => 'cre', 'CsaV3_3G007680' => 'csa', 'CsaV3_3G009710' => 'csa', 'CsaV3_3G034790' => 'csa', 'CsaV3_5G003750' => 'csa', 'CsaV3_6G036620' => 'csa', 'CSS0002288' => 'camsi', 'CSS0011250' => 'camsi', 'CSS0021619' => 'camsi', 'CSS0046701' => 'camsi', 'DCAR_006420' => 'dca', 'DCAR_006865' => 'dca', 'DCAR_008558' => 'dca', 'DCAR_028754' => 'dca', 'DCAR_028755' => 'dca', 'Dinv31218' => 'din', 'Dinv32371' => 'din', 'Dinv34250' => 'din', 'Dinv37156' => 'din', 'Dinv43704' => 'din', 'Duzib093G1811' => 'dzi', 'Duzib106G1622' => 'dzi', 'Duzib114G0504' => 'dzi', 'Duzib128G0338' => 'dzi', 'Duzib128G1577' => 'dzi', 'Duzib133G0104' => 'dzi', 'Duzib133G1080' => 'dzi', 'Duzib138G0324' => 'dzi', 'Duzib138G0394' => 'dzi', 'Duzib205G0122' => 'dzi', 'Duzib268G1020' => 'dzi', 'Duzib268G1359' => 'dzi', 'ECA232G3929' => 'eca', 'ECA236G2210' => 'eca', 'ECA236G2287' => 'eca', 'ECA240G4568' => 'eca', 'ECA247G0894' => 'eca', 'EL10Ac1g00200' => 'bvu', 'EL10Ac1g00886' => 'bvu', 'EL10As1g23091' => 'bvu', 'EL10As1g23092' => 'bvu', 'Eucgr.A01284' => 'egr', 'Eucgr.A01285' => 'egr', 'Eucgr.D02456' => 'egr', 'Eucgr.E00018' => 'egr', 'Eucgr.E01439' => 'egr', 'Eucgr.G02859' => 'egr', 'FAN01G0168' => 'fan', 'FAN01G0453' => 'fan', 'FAN01G2761' => 'fan', 'FAN02G1239' => 'fan', 'FAN03G0645' => 'fan', 'FAN03G2707' => 'fan', 'FAN03G2978' => 'fan', 'FAN04G0227' => 'fan', 'FAN06G0091' => 'fan', 'FAN06G1418' => 'fan', 'FAN06G1512' => 'fan', 'FAN06G1986' => 'fan', 'FAN06G2905' => 'fan', 'FAN06G4325' => 'fan', 'FAN08G0033' => 'fan', 'FAN09G0642' => 'fan', 'FAN10G1763' => 'fan', 'FAN10G2026' => 'fan', 'FAN10G2513' => 'fan', 'FAN10G3402' => 'fan', 'FAN10G3564' => 'fan', 'FAN10G3987' => 'fan', 'FAN13G1490' => 'fan', 'FAN14G5857' => 'fan', 'FAN18G1188' => 'fan', 'FvH4_5g00750' => 'fve', 'FvH4_6g13410' => 'fve', 'FvH4_7g11740' => 'fve', 'FvH4_7g17410' => 'fve', 'FvH4_7g18860' => 'fve', 'Glyma.01G099100' => 'gma', 'Glyma.01G142300' => 'gma', 'Glyma.03G025500' => 'gma', 'Glyma.03G069700' => 'gma', 'Glyma.03G260000' => 'gma', 'Glyma.09G269800' => 'gma', 'Glyma.10G208700' => 'gma', 'Glyma.18G220400' => 'gma', 'Glyma.20G182000' => 'gma', 'Gohir.A01G221726' => 'ghi', 'Gohir.A07G134600' => 'ghi', 'Gohir.A07G146000' => 'ghi', 'Gohir.A08G173900' => 'ghi', 'Gohir.A09G194900' => 'ghi', 'Gohir.A10G204100' => 'ghi', 'Gohir.A11G080600' => 'ghi', 'Gohir.A11G327500' => 'ghi', 'Gohir.A12G101800' => 'ghi', 'Gohir.D01G211200' => 'ghi', 'Gohir.D07G139200' => 'ghi', 'Gohir.D07G152100' => 'ghi', 'Gohir.D08G192600' => 'ghi', 'Gohir.D09G189200' => 'ghi', 'Gohir.D10G212000' => 'ghi', 'Gohir.D11G085200' => 'ghi', 'Gohir.D11G346400' => 'ghi', 'Gohir.D12G104800' => 'ghi', 'Gorai.001G151300' => 'gra', 'Gorai.001G174100' => 'gra', 'Gorai.002G257000' => 'gra', 'Gorai.004G202600' => 'gra', 'Gorai.007G090900' => 'gra', 'Gorai.007G376700' => 'gra', 'Gorai.008G114100' => 'gra', 'Gorai.011G237900' => 'gra', 'GSVIVG01005450001' => 'vvi', 'GSVIVG01016232001' => 'vvi', 'GSVIVG01026157001' => 'vvi', 'GSVIVG01027419001' => 'vvi', 'GSVIVG01027631001' => 'vvi', 'GSVIVG01034143001' => 'vvi', 'HanXRQChr03g0093921' => 'han', 'HanXRQChr04g0120001' => 'han', 'HanXRQChr04g0122561' => 'han', 'HanXRQChr09g0246851' => 'han', 'HanXRQChr10g0293311' => 'han', 'HanXRQChr13g0425231' => 'han', 'HanXRQChr16g0532571' => 'han', 'Haze_09050' => 'cav', 'Haze_15715' => 'cav', 'Haze_15716' => 'cav', 'Haze_16803' => 'cav', 'Haze_16850' => 'cav', 'Hma1.2p1_0301F.1_g118655' => 'hma', 'Hma1.2p1_0309F.1_g120590' => 'hma', 'Hma1.2p1_0936F.1_g238900' => 'hma', 'Hma1.2p1_3552F.1_g336740' => 'hma', 'HPP92_003520' => 'vpl', 'HPP92_006628' => 'vpl', 'HPP92_006645' => 'vpl', 'HPP92_014669' => 'vpl', 'HPP92_015077' => 'vpl', 'Hund16742' => 'sun', 'Hund17022' => 'sun', 'Lalb_Chr02g0152131' => 'lal', 'Lalb_Chr05g0225371' => 'lal', 'Lalb_Chr07g0189841' => 'lal', 'Lalb_Chr07g0192961' => 'lal', 'Lalb_Chr12g0208221' => 'lal', 'Lalb_Chr13g0291211' => 'lal', 'Lalb_Chr13g0291781' => 'lal', 'Lalb_Chr18g0044651' => 'lal', 'Lalb_Chr21g0313731' => 'lal', 'Lj1g0022533' => 'lja', 'Lj2A18T50' => 'lonja', 'Lj2A92G93' => 'lonja', 'Lj3A965T73' => 'lonja', 'Lj3g0000673' => 'lja', 'Lj3g0002666' => 'lja', 'Lj4g0016985' => 'lja', 'Lj5g0003625' => 'lja', 'Lj7A529G36' => 'lonja', 'Lj9A569T49' => 'lonja', 'Lj9A604T63' => 'lonja', 'Lsat_1_v5_gn_3_132060' => 'lsa', 'Lsat_1_v5_gn_4_68941' => 'lsa', 'Lsat_1_v5_gn_5_95580' => 'lsa', 'Lsat_1_v5_gn_7_161' => 'lsa', 'Lsat_1_v5_gn_7_7041' => 'lsa', 'Lsat_1_v5_gn_9_33481' => 'lsa', 'Lsat_1_v5_gn_9_68260' => 'lsa', 'Manes.01G073100' => 'mes', 'Manes.01G266300' => 'mes', 'Manes.02G033300' => 'mes', 'Manes.05G017900' => 'mes', 'Manes.05G046100' => 'mes', 'Manes.08G080900' => 'mes', 'Manes.10G049400' => 'mes', 'Mapoly0009s0186' => 'mpo', 'Mapoly0036s0118' => 'mpo', 'Mapoly0101s0046' => 'mpo', 'MBI04_g30218_MAGBIO' => 'mbi', 'MBI04_g35564_MAGBIO' => 'mbi', 'MBI12_g34011_MAGBIO' => 'mbi', 'MBI14_g04655_MAGBIO' => 'mbi', 'MCO07G653' => 'mco', 'MCO10G173' => 'mco', 'MD01G1087100' => 'mdo', 'MD01G1104200' => 'mdo', 'MD02G1205100' => 'mdo', 'MD04G1079200' => 'mdo', 'MD04G1131400' => 'mdo', 'MD07G1121600' => 'mdo', 'MD07G1157300' => 'mdo', 'MD07G1171000' => 'mdo', 'MD12G1144500' => 'mdo', 'Medtr1g094610' => 'mtr', 'Medtr4g021795' => 'mtr', 'Medtr4g023760' => 'mtr', 'Medtr7g118050' => 'mtr', 'MELO3C005582.2' => 'cme', 'MELO3C005989.2' => 'cme', 'MELO3C006192.2' => 'cme', 'MELO3C009248.2' => 'cme', 'MELO3C019817.2' => 'cme', 'Migut.B01625' => 'egut', 'Migut.B01915' => 'egut', 'Migut.F01721' => 'egut', 'Migut.J00314' => 'egut', 'MSTRG.20742' => 'ama', 'MSTRG.8134' => 'ama', 'Nitab4.5_0000096g0010' => 'nta', 'Nitab4.5_0000202g0030' => 'nta', 'Nitab4.5_0000216g0370' => 'nta', 'Nitab4.5_0000457g0230' => 'nta', 'Nitab4.5_0001702g0170' => 'nta', 'Nitab4.5_0003607g0010' => 'nta', 'Nitab4.5_0004917g0020' => 'nta', 'Nitab4.5_0007059g0010' => 'nta', 'Nitab4.5_0007184g0010' => 'nta', 'Nitab4.5_0007346g0020' => 'nta', 'Nn1g00410' => 'nnu', 'Nn1g01252' => 'nnu', 'Nn2g11168' => 'nnu', 'Nn2g13403' => 'nnu', 'Nn2g13760' => 'nnu', 'Nn4g26380' => 'nnu', 'Oeu000806.2' => 'oeu', 'Oeu005788.1' => 'oeu', 'Oeu006900.3' => 'oeu', 'Oeu007797.1' => 'oeu', 'Oeu011932.1' => 'oeu', 'Oeu022739.1' => 'oeu', 'Oeu037918.1' => 'oeu', 'Oeu055490.2' => 'oeu', 'Os01g0844400' => 'osa', 'Os02g0819100' => 'osa', 'Os03g0804300' => 'osa', 'Os05g0458000' => 'osa', 'Os07g0467800' => 'osa', 'Os12g0602200' => 'osa', 'Peaxi162Scf00013g03444' => 'pax', 'Peaxi162Scf00094g01120' => 'pax', 'Peaxi162Scf00191g01211' => 'pax', 'Peaxi162Scf00238g01110' => 'pax', 'Peaxi162Scf00330g00719' => 'pax', 'Peaxi162Scf00627g00018' => 'pax', 'PGR031G2686' => 'pgr', 'PGR042G0809' => 'pgr', 'PGR142G0193' => 'pgr', 'PGSC0003DMG400011066' => 'stu', 'PGSC0003DMG400012041' => 'stu', 'PGSC0003DMG400013678' => 'stu', 'PGSC0003DMG400023477' => 'stu', 'PGSC0003DMG400025956' => 'stu', 'PGSC0003DMG401019151' => 'stu', 'Phvul.006G116400' => 'pvu', 'Phvul.007G097300' => 'pvu', 'Phvul.010G015000' => 'pvu', 'Phvul.010G083900' => 'pvu', 'Potri.001G117100' => 'ptr', 'Potri.002G147300' => 'ptr', 'Potri.003G115600' => 'ptr', 'Potri.006G087400' => 'ptr', 'Potri.010G226100' => 'ptr', 'Potri.014G069200' => 'ptr', 'Potri.014G104000' => 'ptr', 'Potri.016G100200' => 'ptr', 'Pp3c10_20450' => 'ppa', 'Pp3c1_42400' => 'ppa', 'Pp3c3_24390' => 'ppa', 'Pp3c3_2860' => 'ppa', 'PRCOL_00003193' => 'pco', 'Prupe.2G144500' => 'ppe', 'Prupe.2G195700' => 'ppe', 'Prupe.2G209800' => 'ppe', 'Prupe.5G080000' => 'ppe', 'Prupe.6G257900' => 'ppe', 'Psat3g001160' => 'psa', 'Psat6g181880' => 'psa', 'Psat7g233720' => 'psa', 'PSO063G7587' => 'pso', 'PSO339G2145' => 'pso', 'PSO339G3369' => 'pso', 'PSO478G2747' => 'pso', 'PSO513G0140' => 'pso', 'PSO782G1614' => 'pso', 'PSO782G4889' => 'pso', 'PSO782G5485' => 'pso', 'PSO801G0241' => 'pso', 'QL07p048854' => 'qlo', 'QL08p046745' => 'qlo', 'QL08p052606' => 'qlo', 'QL08p053414' => 'qlo', 'QL08p054868' => 'qlo', 'RcHm_v2.0_Chr1g0350251' => 'rch', 'RcHm_v2.0_Chr1g0360851' => 'rch', 'RcHm_v2.0_Chr1g0362791' => 'rch', 'RcHm_v2.0_Chr3g0466281' => 'rch', 'RcHm_v2.0_Chr7g0201481' => 'rch', 'Rhsim01G0148600' => 'rsi', 'Rhsim05G0194400' => 'rsi', 'Rhsim07G0000700' => 'rsi', 'Rhsim07G0000800' => 'rsi', 'Rhsim07G0027900' => 'rsi', 'Rhsim09G0149500' => 'rsi', 'RhsimUnG0186900' => 'rsi', 'Sabra01G0089900' => 'sbr', 'Sabra02G0114700' => 'sbr', 'Sabra02G0116300' => 'sbr', 'Sabra03G0080100' => 'sbr', 'Sabra08G0024300' => 'sbr', 'Sabra10G0174300' => 'sbr', 'Sabra14G0048900' => 'sbr', 'Sabra14G0076500' => 'sbr', 'SalBow5G2513' => 'sbo', 'Sc01g0002300' => 'sci', 'Sc01g0004450' => 'sci', 'Sc06g0001680' => 'sci', 'Sc23g0003580' => 'sci', 'Sed0000913' => 'sed', 'Sed0001655' => 'sed', 'Sed0007745' => 'sed', 'Sed0010951' => 'sed', 'Sed0017599' => 'sed', 'Sed0021405' => 'sed', 'Sed0022810' => 'sed', 'SEGI_07099' => 'sgi', 'SEGI_11931' => 'sgi', 'SEGI_13187' => 'sgi', 'SEGI_29958' => 'sgi', 'SEGI_36351' => 'sgi', 'SGA_v2.0_scaffold126G33770' => 'sas', 'SGA_v2.0_scaffold153G37003' => 'sas', 'SGA_v2.0_scaffold2G01359' => 'sas', 'SGA_v2.0_scaffold5G03064' => 'sas', 'SGA_v2.0_scaffold95G28903' => 'sas', 'SHI12701' => 'shi', 'SHI26410' => 'shi', 'SHI38997' => 'shi', 'SHI53759' => 'shi', 'SHI53886' => 'shi', 'SHI54714' => 'shi', 'SMO011G0041' => 'smo', 'SMO146G0251' => 'smo', 'SMO160G0004' => 'smo', 'SMO174G0057' => 'smo', 'SMO244G0089' => 'smo', 'SMO296G0011' => 'smo', 'Solyc01g091280.3' => 'sly', 'Solyc05g047610.3' => 'sly', 'Solyc05g047640.3' => 'sly', 'Solyc05g055630.3' => 'sly', 'Solyc10g018160.2' => 'sly', 'Solyc10g084820.2' => 'sly', 'Solyc10g086565.2' => 'sly', 'Sopen01g037030' => 'spe', 'Sopen05g027920' => 'spe', 'Sopen05g034070' => 'spe', 'Sopen10g007260' => 'spe', 'Sopen10g034260' => 'spe', 'Sopen10g035950' => 'spe', 'Sp3g07710' => 'spa', 'Sp4g27420' => 'spa', 'Sp5g02450' => 'spa', 'Sp6g01280' => 'spa', 'Sp6g38480' => 'spa', 'Sp7g20780' => 'spa', 'TAR374G1413' => 'tar', 'TAR623G1777' => 'tar', 'TAR629G2370' => 'tar', 'TAR633G1759' => 'tar', 'TAR636G3387' => 'tar', 'THA.LOC104802447' => 'tha', 'THA.LOC104813916' => 'tha', 'THA.LOC104816423' => 'tha', 'THA.LOC104817246' => 'tha', 'THA.LOC104825895' => 'tha', 'Thecc.01G335200' => 'tca', 'Thecc.01G377400' => 'tca', 'Thecc.03G262200' => 'tca', 'Thecc.05G036800' => 'tca', 'Thecc.10G080500' => 'tca', 'Thecc.10G080800' => 'tca', 'Thhalv10001560m.g' => 'esa', 'Thhalv10006120m.g' => 'esa', 'Thhalv10014375m.g' => 'esa', 'Thhalv10021264m.g' => 'esa', 'Thhalv10028856m.g' => 'esa', 'TPR.G1914' => 'tpr', 'TPR.G4757' => 'tpr', 'TPR.G5595' => 'tpr', 'TWI14G0952' => 'twi', 'TWI14G1307' => 'twi', 'TWI38G2143' => 'twi', 'TWI59G0826' => 'twi', 'TWI77G0527' => 'twi', 'TWI81G0150' => 'twi', 'unitig_21.g21018' => 'ugi', 'unitig_26.g9725' => 'ugi', 'unitig_744.g24653' => 'ugi', 'unitig_749.g13778' => 'ugi', 'unitig_899.g15035' => 'ugi', 'vmacro04296' => 'vma', 'vmacro04852' => 'vma', 'vmacro13404' => 'vma', 'vmacro20169' => 'vma', 'vmacro21014' => 'vma', 'VMungo0331G0237' => 'vmu', 'VMungo0331G0706' => 'vmu', 'VMungo0331G1361' => 'vmu', 'VMungo0331G1489' => 'vmu', 'VMungo0540G1037' => 'vmu', 'VMungo0720G2487' => 'vmu', 'VMungo0720G2721' => 'vmu', 'Zm00001eb086860' => 'zma', 'Zm00001eb104760' => 'zma', 'Zm00001eb148220' => 'zma', 'Zm00001eb259030' => 'zma', 'Zm00001eb289590' => 'zma', 'Zm00001eb420150' => 'zma' ) $gf_id = 'HOM05D000968' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000968' ) $data_identifier = 'HOM05D000968' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 19, 'bol' => (int) 9, 'bra' => (int) 12, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 5, 'ccan' => (int) 7, 'cde' => (int) 5, 'cfa' => (int) 8, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 4, 'dca' => (int) 5, 'din' => (int) 5, 'dzi' => (int) 12, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 25, 'fve' => (int) 5, 'gma' => (int) 9, 'ghi' => (int) 18, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 7, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 5, 'sun' => (int) 2, 'lal' => (int) 9, 'lja' => (int) 5, 'lonja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 9, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 2, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 3, 'stu' => (int) 6, 'pvu' => (int) 4, 'ptr' => (int) 8, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 3, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 1, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 5, 'sas' => (int) 5, 'shi' => (int) 6, 'smo' => (int) 6, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 3, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420150' $species_info = array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ) $local_species = 'cre' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000968', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p31690' => 'bna', 'A03p36040' => 'bna', 'A03p53730' => 'bna', 'A04p01410' => 'bna', 'A05p05420' => 'bna', 'A05p39630' => 'bna', 'A05p39640' => 'bna', 'A09p00970' => 'bna', 'A09p53060' => 'bna', 'A10p31890' => 'bna', 'Aa31LG10G15040' => 'aar', 'Aa31LG1G21090' => 'aar', 'Aa31LG1G26900' => 'aar', 'Aa31LG3G1820' => 'aar', 'Aa31LG5G1100' => 'aar', 'Aa31LG6G4740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2265' => 'aag', 'Actinidia07998' => 'ach', 'Actinidia11266' => 'ach', 'Actinidia12682' => 'ach', 'Actinidia26479' => 'ach', 'Actinidia31406' => 'ach', 'Actinidia32437' => 'ach', 'Actinidia38862' => 'ach', 'Ah.05g174230' => 'amhyb', 'Ah.05g179070' => 'amhyb', 'Ah.05g179090' => 'amhyb', 'Ah.12g059950' => 'amhyb', 'AL3G20480' => 'aly', 'AL4G44520' => 'aly', 'AL5G43110' => 'aly', 'AL6G13890' => 'aly', 'AL6G52620' => 'aly', 'AL7G30830' => 'aly', 'Aqoxy1G00899' => 'aox', 'Aqoxy5G04333' => 'aox', 'Aqoxy7G00641' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3IZ0NN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4EF6AW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W9P8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79GA3M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C43NQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFCU6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G95YVJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCHK29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LU1UG8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX91RN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGB4B1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8DA0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9H7JI' => 'arhy', 'AT3G09320' => 'ath', 'AT3G60800' => 'ath', 'AT4G00840' => 'ath', 'AT4G22750' => 'ath', 'AT5G04270' => 'ath', 'ATR0090G003' => 'atr', 'ATR0559G349' => 'atr', 'ATR0680G261' => 'atr', 'ATR0810G048' => 'atr', 'Atru.chr12.831' => 'acertr', 'Atru.chr5.303' => 'acertr', 'Atru.chr5.748' => 'acertr', 'Atru.chr8.1999' => 'acertr', 'Atru.chr9.1436' => 'acertr', 'AUR62004211' => 'cqu', 'AUR62004548' => 'cqu', 'AUR62013637' => 'cqu', 'AUR62022662' => 'cqu', 'AUR62025777' => 'cqu', 'AUR62042386' => 'cqu', 'BcaB01g02310' => 'bca', 'BcaB01g06062' => 'bca', 'BcaB02g08975' => 'bca', 'BcaB02g08980' => 'bca', 'BcaC01g04228' => 'bca', 'BcaC01g06830' => 'bca', 'BcaC02g10186' => 'bca', 'BcaC02g12214' => 'bca', 'BcaC04g24101' => 'bca', 'BcaC05g29520' => 'bca', 'BcaC05g29661' => 'bca', 'BcaC06g32130' => 'bca', 'BcaC06g32131' => 'bca', 'BcaC07g40601' => 'bca', 'BcaC07g42641' => 'bca', 'BcaNung01038' => 'bca', 'BcaNung01676' => 'bca', 'BcaNung02480' => 'bca', 'BcaNung07376' => 'bca', 'BolC3t16146H' => 'bol', 'BolC3t16637H' => 'bol', 'BolC4t22257H' => 'bol', 'BolC4t24728H' => 'bol', 'BolC5t34517H' => 'bol', 'BolC7t45703H' => 'bol', 'BolC8t51166H' => 'bol', 'BolC9t53038H' => 'bol', 'BolC9t60000H' => 'bol', 'BraA01t01345Z' => 'bra', 'BraA01t01346Z' => 'bra', 'BraA01t01348Z' => 'bra', 'BraA03t12347Z' => 'bra', 'BraA03t12775Z' => 'bra', 'BraA03t14439Z' => 'bra', 'BraA04t15860Z' => 'bra', 'BraA05t19511Z' => 'bra', 'BraA05t22746Z' => 'bra', 'BraA09t35767Z' => 'bra', 'BraA09t40732Z' => 'bra', 'BraA10t45233Z' => 'bra', 'C03p38720' => 'bna', 'C03p43680' => 'bna', 'C04p06350' => 'bna', 'C04p31800' => 'bna', 'C05p58680' => 'bna', 'C07p52110' => 'bna', 'C08p35760' => 'bna', 'C09p01050' => 'bna', 'C09p72600' => 'bna', 'CAN.G106.2' => 'can', 'CAN.G1482.1' => 'can', 'CAN.G324.12' => 'can', 'CAN.G388.20' => 'can', 'CAN.G412.7' => 'can', 'CAN.G694.32' => 'can', 'CAN.G92.12' => 'can', 'CANSAT11G2353' => 'cansat', 'CANSAT21G1398' => 'cansat', 'CANSAT56G2456' => 'cansat', 'CANSAT56G3031' => 'cansat', 'CANSAT56G4539' => 'cansat', 'CARHR083680' => 'chi', 'CARHR171190' => 'chi', 'CARHR209010' => 'chi', 'CARHR229680' => 'chi', 'CARHR249490' => 'chi', 'Carub.0003s0844' => 'cru', 'Carub.0005s2755' => 'cru', 'Carub.0006s0322' => 'cru', 'Carub.0006s3586' => 'cru', 'Carub.0007s1855' => 'cru', 'Ca_07808_v3' => 'car', 'Ca_09535_v3' => 'car', 'Ca_10548_v3' => 'car', 'Ca_19913_v3' => 'car', 'Ca_19916_v3' => 'car', 'Ca_19975_v3' => 'car', 'CBR_g22876' => 'cbr', 'CBR_g22879' => 'cbr', 'CBR_g38491' => 'cbr', 'CBR_g54185' => 'cbr', 'CBR_g54190' => 'cbr', 'Cc02_g11020' => 'ccan', 'Cc02_g23920' => 'ccan', 'Cc02_g39860' => 'ccan', 'Cc02_g39870' => 'ccan', 'Cc03_g06760' => 'ccan', 'Cc06_g02450' => 'ccan', 'Cc09_g09450' => 'ccan', 'CDE02G1959' => 'cde', 'CDE04G0600' => 'cde', 'CDE07G1996' => 'cde', 'CDE07G2078' => 'cde', 'CDE11G0611' => 'cde', 'Cfa001683' => 'cfa', 'Cfa001734' => 'cfa', 'Cfa001737' => 'cfa', 'Cfa003751' => 'cfa', 'Cfa012019' => 'cfa', 'Cfa017353' => 'cfa', 'Cfa017732' => 'cfa', 'Cfa022464' => 'cfa', 'Ciclev10012400m.g' => 'ccl', 'Ciclev10021242m.g' => 'ccl', 'Ciclev10021302m.g' => 'ccl', 'Ciclev10021463m.g' => 'ccl', 'Ciclev10032359m.g' => 'ccl', 'CiPaw.01G081000' => 'cil', 'CiPaw.01G262500' => 'cil', 'CiPaw.01G269800' => 'cil', 'CiPaw.02G168400' => 'cil', 'CiPaw.05G119500' => 'cil', 'CiPaw.11G147300' => 'cil', 'ClCG01G003630' => 'cla', 'ClCG05G000510' => 'cla', 'ClCG05G002300' => 'cla', 'ClCG08G007650' => 'cla', 'ClCG10G021250' => 'cla', 'COL.COLO4_06218' => 'col', 'COL.COLO4_12538' => 'col', 'COL.COLO4_14775' => 'col', 'COL.COLO4_23875' => 'col', 'Cpa.g.sc141.16' => 'cpa', 'Cpa.g.sc169.16' => 'cpa', 'Cpa.g.sc244.4' => 'cpa', 'Cpa.g.sc244.5' => 'cpa', 'Cpa.g.sc29.87' => 'cpa', 'Cpa.g.sc53.115' => 'cpa', 'Cre03.g207502' => 'cre', 'Cre06.g277000' => 'cre', 'Cre09.g394050' => 'cre', 'CsaV3_3G007680' => 'csa', 'CsaV3_3G009710' => 'csa', 'CsaV3_3G034790' => 'csa', 'CsaV3_5G003750' => 'csa', 'CsaV3_6G036620' => 'csa', 'CSS0002288' => 'camsi', 'CSS0011250' => 'camsi', 'CSS0021619' => 'camsi', 'CSS0046701' => 'camsi', 'DCAR_006420' => 'dca', 'DCAR_006865' => 'dca', 'DCAR_008558' => 'dca', 'DCAR_028754' => 'dca', 'DCAR_028755' => 'dca', 'Dinv31218' => 'din', 'Dinv32371' => 'din', 'Dinv34250' => 'din', 'Dinv37156' => 'din', 'Dinv43704' => 'din', 'Duzib093G1811' => 'dzi', 'Duzib106G1622' => 'dzi', 'Duzib114G0504' => 'dzi', 'Duzib128G0338' => 'dzi', 'Duzib128G1577' => 'dzi', 'Duzib133G0104' => 'dzi', 'Duzib133G1080' => 'dzi', 'Duzib138G0324' => 'dzi', 'Duzib138G0394' => 'dzi', 'Duzib205G0122' => 'dzi', 'Duzib268G1020' => 'dzi', 'Duzib268G1359' => 'dzi', 'ECA232G3929' => 'eca', 'ECA236G2210' => 'eca', 'ECA236G2287' => 'eca', 'ECA240G4568' => 'eca', 'ECA247G0894' => 'eca', 'EL10Ac1g00200' => 'bvu', 'EL10Ac1g00886' => 'bvu', 'EL10As1g23091' => 'bvu', 'EL10As1g23092' => 'bvu', 'Eucgr.A01284' => 'egr', 'Eucgr.A01285' => 'egr', 'Eucgr.D02456' => 'egr', 'Eucgr.E00018' => 'egr', 'Eucgr.E01439' => 'egr', 'Eucgr.G02859' => 'egr', 'FAN01G0168' => 'fan', 'FAN01G0453' => 'fan', 'FAN01G2761' => 'fan', 'FAN02G1239' => 'fan', 'FAN03G0645' => 'fan', 'FAN03G2707' => 'fan', 'FAN03G2978' => 'fan', 'FAN04G0227' => 'fan', 'FAN06G0091' => 'fan', 'FAN06G1418' => 'fan', 'FAN06G1512' => 'fan', 'FAN06G1986' => 'fan', 'FAN06G2905' => 'fan', 'FAN06G4325' => 'fan', 'FAN08G0033' => 'fan', 'FAN09G0642' => 'fan', 'FAN10G1763' => 'fan', 'FAN10G2026' => 'fan', 'FAN10G2513' => 'fan', 'FAN10G3402' => 'fan', 'FAN10G3564' => 'fan', 'FAN10G3987' => 'fan', 'FAN13G1490' => 'fan', 'FAN14G5857' => 'fan', 'FAN18G1188' => 'fan', 'FvH4_5g00750' => 'fve', 'FvH4_6g13410' => 'fve', 'FvH4_7g11740' => 'fve', 'FvH4_7g17410' => 'fve', 'FvH4_7g18860' => 'fve', 'Glyma.01G099100' => 'gma', 'Glyma.01G142300' => 'gma', 'Glyma.03G025500' => 'gma', 'Glyma.03G069700' => 'gma', 'Glyma.03G260000' => 'gma', 'Glyma.09G269800' => 'gma', 'Glyma.10G208700' => 'gma', 'Glyma.18G220400' => 'gma', 'Glyma.20G182000' => 'gma', 'Gohir.A01G221726' => 'ghi', 'Gohir.A07G134600' => 'ghi', 'Gohir.A07G146000' => 'ghi', 'Gohir.A08G173900' => 'ghi', 'Gohir.A09G194900' => 'ghi', 'Gohir.A10G204100' => 'ghi', 'Gohir.A11G080600' => 'ghi', 'Gohir.A11G327500' => 'ghi', 'Gohir.A12G101800' => 'ghi', 'Gohir.D01G211200' => 'ghi', 'Gohir.D07G139200' => 'ghi', 'Gohir.D07G152100' => 'ghi', 'Gohir.D08G192600' => 'ghi', 'Gohir.D09G189200' => 'ghi', 'Gohir.D10G212000' => 'ghi', 'Gohir.D11G085200' => 'ghi', 'Gohir.D11G346400' => 'ghi', 'Gohir.D12G104800' => 'ghi', 'Gorai.001G151300' => 'gra', 'Gorai.001G174100' => 'gra', 'Gorai.002G257000' => 'gra', 'Gorai.004G202600' => 'gra', 'Gorai.007G090900' => 'gra', 'Gorai.007G376700' => 'gra', 'Gorai.008G114100' => 'gra', 'Gorai.011G237900' => 'gra', 'GSVIVG01005450001' => 'vvi', 'GSVIVG01016232001' => 'vvi', 'GSVIVG01026157001' => 'vvi', 'GSVIVG01027419001' => 'vvi', 'GSVIVG01027631001' => 'vvi', 'GSVIVG01034143001' => 'vvi', 'HanXRQChr03g0093921' => 'han', 'HanXRQChr04g0120001' => 'han', 'HanXRQChr04g0122561' => 'han', 'HanXRQChr09g0246851' => 'han', 'HanXRQChr10g0293311' => 'han', 'HanXRQChr13g0425231' => 'han', 'HanXRQChr16g0532571' => 'han', 'Haze_09050' => 'cav', 'Haze_15715' => 'cav', 'Haze_15716' => 'cav', 'Haze_16803' => 'cav', 'Haze_16850' => 'cav', 'Hma1.2p1_0301F.1_g118655' => 'hma', 'Hma1.2p1_0309F.1_g120590' => 'hma', 'Hma1.2p1_0936F.1_g238900' => 'hma', 'Hma1.2p1_3552F.1_g336740' => 'hma', 'HPP92_003520' => 'vpl', 'HPP92_006628' => 'vpl', 'HPP92_006645' => 'vpl', 'HPP92_014669' => 'vpl', 'HPP92_015077' => 'vpl', 'Hund16742' => 'sun', 'Hund17022' => 'sun', 'Lalb_Chr02g0152131' => 'lal', 'Lalb_Chr05g0225371' => 'lal', 'Lalb_Chr07g0189841' => 'lal', 'Lalb_Chr07g0192961' => 'lal', 'Lalb_Chr12g0208221' => 'lal', 'Lalb_Chr13g0291211' => 'lal', 'Lalb_Chr13g0291781' => 'lal', 'Lalb_Chr18g0044651' => 'lal', 'Lalb_Chr21g0313731' => 'lal', 'Lj1g0022533' => 'lja', 'Lj2A18T50' => 'lonja', 'Lj2A92G93' => 'lonja', 'Lj3A965T73' => 'lonja', 'Lj3g0000673' => 'lja', 'Lj3g0002666' => 'lja', 'Lj4g0016985' => 'lja', 'Lj5g0003625' => 'lja', 'Lj7A529G36' => 'lonja', 'Lj9A569T49' => 'lonja', 'Lj9A604T63' => 'lonja', 'Lsat_1_v5_gn_3_132060' => 'lsa', 'Lsat_1_v5_gn_4_68941' => 'lsa', 'Lsat_1_v5_gn_5_95580' => 'lsa', 'Lsat_1_v5_gn_7_161' => 'lsa', 'Lsat_1_v5_gn_7_7041' => 'lsa', 'Lsat_1_v5_gn_9_33481' => 'lsa', 'Lsat_1_v5_gn_9_68260' => 'lsa', 'Manes.01G073100' => 'mes', 'Manes.01G266300' => 'mes', 'Manes.02G033300' => 'mes', 'Manes.05G017900' => 'mes', 'Manes.05G046100' => 'mes', 'Manes.08G080900' => 'mes', 'Manes.10G049400' => 'mes', 'Mapoly0009s0186' => 'mpo', 'Mapoly0036s0118' => 'mpo', 'Mapoly0101s0046' => 'mpo', 'MBI04_g30218_MAGBIO' => 'mbi', 'MBI04_g35564_MAGBIO' => 'mbi', 'MBI12_g34011_MAGBIO' => 'mbi', 'MBI14_g04655_MAGBIO' => 'mbi', 'MCO07G653' => 'mco', 'MCO10G173' => 'mco', 'MD01G1087100' => 'mdo', 'MD01G1104200' => 'mdo', 'MD02G1205100' => 'mdo', 'MD04G1079200' => 'mdo', 'MD04G1131400' => 'mdo', 'MD07G1121600' => 'mdo', 'MD07G1157300' => 'mdo', 'MD07G1171000' => 'mdo', 'MD12G1144500' => 'mdo', 'Medtr1g094610' => 'mtr', 'Medtr4g021795' => 'mtr', 'Medtr4g023760' => 'mtr', 'Medtr7g118050' => 'mtr', 'MELO3C005582.2' => 'cme', 'MELO3C005989.2' => 'cme', 'MELO3C006192.2' => 'cme', 'MELO3C009248.2' => 'cme', 'MELO3C019817.2' => 'cme', 'Migut.B01625' => 'egut', 'Migut.B01915' => 'egut', 'Migut.F01721' => 'egut', 'Migut.J00314' => 'egut', 'MSTRG.20742' => 'ama', 'MSTRG.8134' => 'ama', 'Nitab4.5_0000096g0010' => 'nta', 'Nitab4.5_0000202g0030' => 'nta', 'Nitab4.5_0000216g0370' => 'nta', 'Nitab4.5_0000457g0230' => 'nta', 'Nitab4.5_0001702g0170' => 'nta', 'Nitab4.5_0003607g0010' => 'nta', 'Nitab4.5_0004917g0020' => 'nta', 'Nitab4.5_0007059g0010' => 'nta', 'Nitab4.5_0007184g0010' => 'nta', 'Nitab4.5_0007346g0020' => 'nta', 'Nn1g00410' => 'nnu', 'Nn1g01252' => 'nnu', 'Nn2g11168' => 'nnu', 'Nn2g13403' => 'nnu', 'Nn2g13760' => 'nnu', 'Nn4g26380' => 'nnu', 'Oeu000806.2' => 'oeu', 'Oeu005788.1' => 'oeu', 'Oeu006900.3' => 'oeu', 'Oeu007797.1' => 'oeu', 'Oeu011932.1' => 'oeu', 'Oeu022739.1' => 'oeu', 'Oeu037918.1' => 'oeu', 'Oeu055490.2' => 'oeu', 'Os01g0844400' => 'osa', 'Os02g0819100' => 'osa', 'Os03g0804300' => 'osa', 'Os05g0458000' => 'osa', 'Os07g0467800' => 'osa', 'Os12g0602200' => 'osa', 'Peaxi162Scf00013g03444' => 'pax', 'Peaxi162Scf00094g01120' => 'pax', 'Peaxi162Scf00191g01211' => 'pax', 'Peaxi162Scf00238g01110' => 'pax', 'Peaxi162Scf00330g00719' => 'pax', 'Peaxi162Scf00627g00018' => 'pax', 'PGR031G2686' => 'pgr', 'PGR042G0809' => 'pgr', 'PGR142G0193' => 'pgr', 'PGSC0003DMG400011066' => 'stu', 'PGSC0003DMG400012041' => 'stu', 'PGSC0003DMG400013678' => 'stu', 'PGSC0003DMG400023477' => 'stu', 'PGSC0003DMG400025956' => 'stu', 'PGSC0003DMG401019151' => 'stu', 'Phvul.006G116400' => 'pvu', 'Phvul.007G097300' => 'pvu', 'Phvul.010G015000' => 'pvu', 'Phvul.010G083900' => 'pvu', 'Potri.001G117100' => 'ptr', 'Potri.002G147300' => 'ptr', 'Potri.003G115600' => 'ptr', 'Potri.006G087400' => 'ptr', 'Potri.010G226100' => 'ptr', 'Potri.014G069200' => 'ptr', 'Potri.014G104000' => 'ptr', 'Potri.016G100200' => 'ptr', 'Pp3c10_20450' => 'ppa', 'Pp3c1_42400' => 'ppa', 'Pp3c3_24390' => 'ppa', 'Pp3c3_2860' => 'ppa', 'PRCOL_00003193' => 'pco', 'Prupe.2G144500' => 'ppe', 'Prupe.2G195700' => 'ppe', 'Prupe.2G209800' => 'ppe', 'Prupe.5G080000' => 'ppe', 'Prupe.6G257900' => 'ppe', 'Psat3g001160' => 'psa', 'Psat6g181880' => 'psa', 'Psat7g233720' => 'psa', 'PSO063G7587' => 'pso', 'PSO339G2145' => 'pso', 'PSO339G3369' => 'pso', 'PSO478G2747' => 'pso', 'PSO513G0140' => 'pso', 'PSO782G1614' => 'pso', 'PSO782G4889' => 'pso', 'PSO782G5485' => 'pso', 'PSO801G0241' => 'pso', 'QL07p048854' => 'qlo', 'QL08p046745' => 'qlo', 'QL08p052606' => 'qlo', 'QL08p053414' => 'qlo', 'QL08p054868' => 'qlo', 'RcHm_v2.0_Chr1g0350251' => 'rch', 'RcHm_v2.0_Chr1g0360851' => 'rch', 'RcHm_v2.0_Chr1g0362791' => 'rch', 'RcHm_v2.0_Chr3g0466281' => 'rch', 'RcHm_v2.0_Chr7g0201481' => 'rch', 'Rhsim01G0148600' => 'rsi', 'Rhsim05G0194400' => 'rsi', 'Rhsim07G0000700' => 'rsi', 'Rhsim07G0000800' => 'rsi', 'Rhsim07G0027900' => 'rsi', 'Rhsim09G0149500' => 'rsi', 'RhsimUnG0186900' => 'rsi', 'Sabra01G0089900' => 'sbr', 'Sabra02G0114700' => 'sbr', 'Sabra02G0116300' => 'sbr', 'Sabra03G0080100' => 'sbr', 'Sabra08G0024300' => 'sbr', 'Sabra10G0174300' => 'sbr', 'Sabra14G0048900' => 'sbr', 'Sabra14G0076500' => 'sbr', 'SalBow5G2513' => 'sbo', 'Sc01g0002300' => 'sci', 'Sc01g0004450' => 'sci', 'Sc06g0001680' => 'sci', 'Sc23g0003580' => 'sci', 'Sed0000913' => 'sed', 'Sed0001655' => 'sed', 'Sed0007745' => 'sed', 'Sed0010951' => 'sed', 'Sed0017599' => 'sed', 'Sed0021405' => 'sed', 'Sed0022810' => 'sed', 'SEGI_07099' => 'sgi', 'SEGI_11931' => 'sgi', 'SEGI_13187' => 'sgi', 'SEGI_29958' => 'sgi', 'SEGI_36351' => 'sgi', 'SGA_v2.0_scaffold126G33770' => 'sas', 'SGA_v2.0_scaffold153G37003' => 'sas', 'SGA_v2.0_scaffold2G01359' => 'sas', 'SGA_v2.0_scaffold5G03064' => 'sas', 'SGA_v2.0_scaffold95G28903' => 'sas', 'SHI12701' => 'shi', 'SHI26410' => 'shi', 'SHI38997' => 'shi', 'SHI53759' => 'shi', 'SHI53886' => 'shi', 'SHI54714' => 'shi', 'SMO011G0041' => 'smo', 'SMO146G0251' => 'smo', 'SMO160G0004' => 'smo', 'SMO174G0057' => 'smo', 'SMO244G0089' => 'smo', 'SMO296G0011' => 'smo', 'Solyc01g091280.3' => 'sly', 'Solyc05g047610.3' => 'sly', 'Solyc05g047640.3' => 'sly', 'Solyc05g055630.3' => 'sly', 'Solyc10g018160.2' => 'sly', 'Solyc10g084820.2' => 'sly', 'Solyc10g086565.2' => 'sly', 'Sopen01g037030' => 'spe', 'Sopen05g027920' => 'spe', 'Sopen05g034070' => 'spe', 'Sopen10g007260' => 'spe', 'Sopen10g034260' => 'spe', 'Sopen10g035950' => 'spe', 'Sp3g07710' => 'spa', 'Sp4g27420' => 'spa', 'Sp5g02450' => 'spa', 'Sp6g01280' => 'spa', 'Sp6g38480' => 'spa', 'Sp7g20780' => 'spa', 'TAR374G1413' => 'tar', 'TAR623G1777' => 'tar', 'TAR629G2370' => 'tar', 'TAR633G1759' => 'tar', 'TAR636G3387' => 'tar', 'THA.LOC104802447' => 'tha', 'THA.LOC104813916' => 'tha', 'THA.LOC104816423' => 'tha', 'THA.LOC104817246' => 'tha', 'THA.LOC104825895' => 'tha', 'Thecc.01G335200' => 'tca', 'Thecc.01G377400' => 'tca', 'Thecc.03G262200' => 'tca', 'Thecc.05G036800' => 'tca', 'Thecc.10G080500' => 'tca', 'Thecc.10G080800' => 'tca', 'Thhalv10001560m.g' => 'esa', 'Thhalv10006120m.g' => 'esa', 'Thhalv10014375m.g' => 'esa', 'Thhalv10021264m.g' => 'esa', 'Thhalv10028856m.g' => 'esa', 'TPR.G1914' => 'tpr', 'TPR.G4757' => 'tpr', 'TPR.G5595' => 'tpr', 'TWI14G0952' => 'twi', 'TWI14G1307' => 'twi', 'TWI38G2143' => 'twi', 'TWI59G0826' => 'twi', 'TWI77G0527' => 'twi', 'TWI81G0150' => 'twi', 'unitig_21.g21018' => 'ugi', 'unitig_26.g9725' => 'ugi', 'unitig_744.g24653' => 'ugi', 'unitig_749.g13778' => 'ugi', 'unitig_899.g15035' => 'ugi', 'vmacro04296' => 'vma', 'vmacro04852' => 'vma', 'vmacro13404' => 'vma', 'vmacro20169' => 'vma', 'vmacro21014' => 'vma', 'VMungo0331G0237' => 'vmu', 'VMungo0331G0706' => 'vmu', 'VMungo0331G1361' => 'vmu', 'VMungo0331G1489' => 'vmu', 'VMungo0540G1037' => 'vmu', 'VMungo0720G2487' => 'vmu', 'VMungo0720G2721' => 'vmu', 'Zm00001eb086860' => 'zma', 'Zm00001eb104760' => 'zma', 'Zm00001eb148220' => 'zma', 'Zm00001eb259030' => 'zma', 'Zm00001eb289590' => 'zma', 'Zm00001eb420150' => 'zma' ), 'gf_id' => 'HOM05D000968', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000968' ), 'data_identifier' => 'HOM05D000968', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000968', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p31690' => 'bna', 'A03p36040' => 'bna', 'A03p53730' => 'bna', 'A04p01410' => 'bna', 'A05p05420' => 'bna', 'A05p39630' => 'bna', 'A05p39640' => 'bna', 'A09p00970' => 'bna', 'A09p53060' => 'bna', 'A10p31890' => 'bna', 'Aa31LG10G15040' => 'aar', 'Aa31LG1G21090' => 'aar', 'Aa31LG1G26900' => 'aar', 'Aa31LG3G1820' => 'aar', 'Aa31LG5G1100' => 'aar', 'Aa31LG6G4740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2265' => 'aag', 'Actinidia07998' => 'ach', 'Actinidia11266' => 'ach', 'Actinidia12682' => 'ach', 'Actinidia26479' => 'ach', 'Actinidia31406' => 'ach', 'Actinidia32437' => 'ach', 'Actinidia38862' => 'ach', 'Ah.05g174230' => 'amhyb', 'Ah.05g179070' => 'amhyb', 'Ah.05g179090' => 'amhyb', 'Ah.12g059950' => 'amhyb', 'AL3G20480' => 'aly', 'AL4G44520' => 'aly', 'AL5G43110' => 'aly', 'AL6G13890' => 'aly', 'AL6G52620' => 'aly', 'AL7G30830' => 'aly', 'Aqoxy1G00899' => 'aox', 'Aqoxy5G04333' => 'aox', 'Aqoxy7G00641' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3IZ0NN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4EF6AW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W9P8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79GA3M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C43NQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFCU6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G95YVJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCHK29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LU1UG8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX91RN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGB4B1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8DA0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9H7JI' => 'arhy', 'AT3G09320' => 'ath', 'AT3G60800' => 'ath', 'AT4G00840' => 'ath', 'AT4G22750' => 'ath', 'AT5G04270' => 'ath', 'ATR0090G003' => 'atr', 'ATR0559G349' => 'atr', 'ATR0680G261' => 'atr', 'ATR0810G048' => 'atr', 'Atru.chr12.831' => 'acertr', 'Atru.chr5.303' => 'acertr', 'Atru.chr5.748' => 'acertr', 'Atru.chr8.1999' => 'acertr', 'Atru.chr9.1436' => 'acertr', 'AUR62004211' => 'cqu', 'AUR62004548' => 'cqu', 'AUR62013637' => 'cqu', 'AUR62022662' => 'cqu', 'AUR62025777' => 'cqu', 'AUR62042386' => 'cqu', 'BcaB01g02310' => 'bca', 'BcaB01g06062' => 'bca', 'BcaB02g08975' => 'bca', 'BcaB02g08980' => 'bca', 'BcaC01g04228' => 'bca', 'BcaC01g06830' => 'bca', 'BcaC02g10186' => 'bca', 'BcaC02g12214' => 'bca', 'BcaC04g24101' => 'bca', 'BcaC05g29520' => 'bca', 'BcaC05g29661' => 'bca', 'BcaC06g32130' => 'bca', 'BcaC06g32131' => 'bca', 'BcaC07g40601' => 'bca', 'BcaC07g42641' => 'bca', 'BcaNung01038' => 'bca', 'BcaNung01676' => 'bca', 'BcaNung02480' => 'bca', 'BcaNung07376' => 'bca', 'BolC3t16146H' => 'bol', 'BolC3t16637H' => 'bol', 'BolC4t22257H' => 'bol', 'BolC4t24728H' => 'bol', 'BolC5t34517H' => 'bol', 'BolC7t45703H' => 'bol', 'BolC8t51166H' => 'bol', 'BolC9t53038H' => 'bol', 'BolC9t60000H' => 'bol', 'BraA01t01345Z' => 'bra', 'BraA01t01346Z' => 'bra', 'BraA01t01348Z' => 'bra', 'BraA03t12347Z' => 'bra', 'BraA03t12775Z' => 'bra', 'BraA03t14439Z' => 'bra', 'BraA04t15860Z' => 'bra', 'BraA05t19511Z' => 'bra', 'BraA05t22746Z' => 'bra', 'BraA09t35767Z' => 'bra', 'BraA09t40732Z' => 'bra', 'BraA10t45233Z' => 'bra', 'C03p38720' => 'bna', 'C03p43680' => 'bna', 'C04p06350' => 'bna', 'C04p31800' => 'bna', 'C05p58680' => 'bna', 'C07p52110' => 'bna', 'C08p35760' => 'bna', 'C09p01050' => 'bna', 'C09p72600' => 'bna', 'CAN.G106.2' => 'can', 'CAN.G1482.1' => 'can', 'CAN.G324.12' => 'can', 'CAN.G388.20' => 'can', 'CAN.G412.7' => 'can', 'CAN.G694.32' => 'can', 'CAN.G92.12' => 'can', 'CANSAT11G2353' => 'cansat', 'CANSAT21G1398' => 'cansat', 'CANSAT56G2456' => 'cansat', 'CANSAT56G3031' => 'cansat', 'CANSAT56G4539' => 'cansat', 'CARHR083680' => 'chi', 'CARHR171190' => 'chi', 'CARHR209010' => 'chi', 'CARHR229680' => 'chi', 'CARHR249490' => 'chi', 'Carub.0003s0844' => 'cru', 'Carub.0005s2755' => 'cru', 'Carub.0006s0322' => 'cru', 'Carub.0006s3586' => 'cru', 'Carub.0007s1855' => 'cru', 'Ca_07808_v3' => 'car', 'Ca_09535_v3' => 'car', 'Ca_10548_v3' => 'car', 'Ca_19913_v3' => 'car', 'Ca_19916_v3' => 'car', 'Ca_19975_v3' => 'car', 'CBR_g22876' => 'cbr', 'CBR_g22879' => 'cbr', 'CBR_g38491' => 'cbr', 'CBR_g54185' => 'cbr', 'CBR_g54190' => 'cbr', 'Cc02_g11020' => 'ccan', 'Cc02_g23920' => 'ccan', 'Cc02_g39860' => 'ccan', 'Cc02_g39870' => 'ccan', 'Cc03_g06760' => 'ccan', 'Cc06_g02450' => 'ccan', 'Cc09_g09450' => 'ccan', 'CDE02G1959' => 'cde', 'CDE04G0600' => 'cde', 'CDE07G1996' => 'cde', 'CDE07G2078' => 'cde', 'CDE11G0611' => 'cde', 'Cfa001683' => 'cfa', 'Cfa001734' => 'cfa', 'Cfa001737' => 'cfa', 'Cfa003751' => 'cfa', 'Cfa012019' => 'cfa', 'Cfa017353' => 'cfa', 'Cfa017732' => 'cfa', 'Cfa022464' => 'cfa', 'Ciclev10012400m.g' => 'ccl', 'Ciclev10021242m.g' => 'ccl', 'Ciclev10021302m.g' => 'ccl', 'Ciclev10021463m.g' => 'ccl', 'Ciclev10032359m.g' => 'ccl', 'CiPaw.01G081000' => 'cil', 'CiPaw.01G262500' => 'cil', 'CiPaw.01G269800' => 'cil', 'CiPaw.02G168400' => 'cil', 'CiPaw.05G119500' => 'cil', 'CiPaw.11G147300' => 'cil', 'ClCG01G003630' => 'cla', 'ClCG05G000510' => 'cla', 'ClCG05G002300' => 'cla', 'ClCG08G007650' => 'cla', 'ClCG10G021250' => 'cla', 'COL.COLO4_06218' => 'col', 'COL.COLO4_12538' => 'col', 'COL.COLO4_14775' => 'col', 'COL.COLO4_23875' => 'col', 'Cpa.g.sc141.16' => 'cpa', 'Cpa.g.sc169.16' => 'cpa', 'Cpa.g.sc244.4' => 'cpa', 'Cpa.g.sc244.5' => 'cpa', 'Cpa.g.sc29.87' => 'cpa', 'Cpa.g.sc53.115' => 'cpa', 'Cre03.g207502' => 'cre', 'Cre06.g277000' => 'cre', 'Cre09.g394050' => 'cre', 'CsaV3_3G007680' => 'csa', 'CsaV3_3G009710' => 'csa', 'CsaV3_3G034790' => 'csa', 'CsaV3_5G003750' => 'csa', 'CsaV3_6G036620' => 'csa', 'CSS0002288' => 'camsi', 'CSS0011250' => 'camsi', 'CSS0021619' => 'camsi', 'CSS0046701' => 'camsi', 'DCAR_006420' => 'dca', 'DCAR_006865' => 'dca', 'DCAR_008558' => 'dca', 'DCAR_028754' => 'dca', 'DCAR_028755' => 'dca', 'Dinv31218' => 'din', 'Dinv32371' => 'din', 'Dinv34250' => 'din', 'Dinv37156' => 'din', 'Dinv43704' => 'din', 'Duzib093G1811' => 'dzi', 'Duzib106G1622' => 'dzi', 'Duzib114G0504' => 'dzi', 'Duzib128G0338' => 'dzi', 'Duzib128G1577' => 'dzi', 'Duzib133G0104' => 'dzi', 'Duzib133G1080' => 'dzi', 'Duzib138G0324' => 'dzi', 'Duzib138G0394' => 'dzi', 'Duzib205G0122' => 'dzi', 'Duzib268G1020' => 'dzi', 'Duzib268G1359' => 'dzi', 'ECA232G3929' => 'eca', 'ECA236G2210' => 'eca', 'ECA236G2287' => 'eca', 'ECA240G4568' => 'eca', 'ECA247G0894' => 'eca', 'EL10Ac1g00200' => 'bvu', 'EL10Ac1g00886' => 'bvu', 'EL10As1g23091' => 'bvu', 'EL10As1g23092' => 'bvu', 'Eucgr.A01284' => 'egr', 'Eucgr.A01285' => 'egr', 'Eucgr.D02456' => 'egr', 'Eucgr.E00018' => 'egr', 'Eucgr.E01439' => 'egr', 'Eucgr.G02859' => 'egr', 'FAN01G0168' => 'fan', 'FAN01G0453' => 'fan', 'FAN01G2761' => 'fan', 'FAN02G1239' => 'fan', 'FAN03G0645' => 'fan', 'FAN03G2707' => 'fan', 'FAN03G2978' => 'fan', 'FAN04G0227' => 'fan', 'FAN06G0091' => 'fan', 'FAN06G1418' => 'fan', 'FAN06G1512' => 'fan', 'FAN06G1986' => 'fan', 'FAN06G2905' => 'fan', 'FAN06G4325' => 'fan', 'FAN08G0033' => 'fan', 'FAN09G0642' => 'fan', 'FAN10G1763' => 'fan', 'FAN10G2026' => 'fan', 'FAN10G2513' => 'fan', 'FAN10G3402' => 'fan', 'FAN10G3564' => 'fan', 'FAN10G3987' => 'fan', 'FAN13G1490' => 'fan', 'FAN14G5857' => 'fan', 'FAN18G1188' => 'fan', 'FvH4_5g00750' => 'fve', 'FvH4_6g13410' => 'fve', 'FvH4_7g11740' => 'fve', 'FvH4_7g17410' => 'fve', 'FvH4_7g18860' => 'fve', 'Glyma.01G099100' => 'gma', 'Glyma.01G142300' => 'gma', 'Glyma.03G025500' => 'gma', 'Glyma.03G069700' => 'gma', 'Glyma.03G260000' => 'gma', 'Glyma.09G269800' => 'gma', 'Glyma.10G208700' => 'gma', 'Glyma.18G220400' => 'gma', 'Glyma.20G182000' => 'gma', 'Gohir.A01G221726' => 'ghi', 'Gohir.A07G134600' => 'ghi', 'Gohir.A07G146000' => 'ghi', 'Gohir.A08G173900' => 'ghi', 'Gohir.A09G194900' => 'ghi', 'Gohir.A10G204100' => 'ghi', 'Gohir.A11G080600' => 'ghi', 'Gohir.A11G327500' => 'ghi', 'Gohir.A12G101800' => 'ghi', 'Gohir.D01G211200' => 'ghi', 'Gohir.D07G139200' => 'ghi', 'Gohir.D07G152100' => 'ghi', 'Gohir.D08G192600' => 'ghi', 'Gohir.D09G189200' => 'ghi', 'Gohir.D10G212000' => 'ghi', 'Gohir.D11G085200' => 'ghi', 'Gohir.D11G346400' => 'ghi', 'Gohir.D12G104800' => 'ghi', 'Gorai.001G151300' => 'gra', 'Gorai.001G174100' => 'gra', 'Gorai.002G257000' => 'gra', 'Gorai.004G202600' => 'gra', 'Gorai.007G090900' => 'gra', 'Gorai.007G376700' => 'gra', 'Gorai.008G114100' => 'gra', 'Gorai.011G237900' => 'gra', 'GSVIVG01005450001' => 'vvi', 'GSVIVG01016232001' => 'vvi', 'GSVIVG01026157001' => 'vvi', 'GSVIVG01027419001' => 'vvi', 'GSVIVG01027631001' => 'vvi', 'GSVIVG01034143001' => 'vvi', 'HanXRQChr03g0093921' => 'han', 'HanXRQChr04g0120001' => 'han', 'HanXRQChr04g0122561' => 'han', 'HanXRQChr09g0246851' => 'han', 'HanXRQChr10g0293311' => 'han', 'HanXRQChr13g0425231' => 'han', 'HanXRQChr16g0532571' => 'han', 'Haze_09050' => 'cav', 'Haze_15715' => 'cav', 'Haze_15716' => 'cav', 'Haze_16803' => 'cav', 'Haze_16850' => 'cav', 'Hma1.2p1_0301F.1_g118655' => 'hma', 'Hma1.2p1_0309F.1_g120590' => 'hma', 'Hma1.2p1_0936F.1_g238900' => 'hma', 'Hma1.2p1_3552F.1_g336740' => 'hma', 'HPP92_003520' => 'vpl', 'HPP92_006628' => 'vpl', 'HPP92_006645' => 'vpl', 'HPP92_014669' => 'vpl', 'HPP92_015077' => 'vpl', 'Hund16742' => 'sun', 'Hund17022' => 'sun', 'Lalb_Chr02g0152131' => 'lal', 'Lalb_Chr05g0225371' => 'lal', 'Lalb_Chr07g0189841' => 'lal', 'Lalb_Chr07g0192961' => 'lal', 'Lalb_Chr12g0208221' => 'lal', 'Lalb_Chr13g0291211' => 'lal', 'Lalb_Chr13g0291781' => 'lal', 'Lalb_Chr18g0044651' => 'lal', 'Lalb_Chr21g0313731' => 'lal', 'Lj1g0022533' => 'lja', 'Lj2A18T50' => 'lonja', 'Lj2A92G93' => 'lonja', 'Lj3A965T73' => 'lonja', 'Lj3g0000673' => 'lja', 'Lj3g0002666' => 'lja', 'Lj4g0016985' => 'lja', 'Lj5g0003625' => 'lja', 'Lj7A529G36' => 'lonja', 'Lj9A569T49' => 'lonja', 'Lj9A604T63' => 'lonja', 'Lsat_1_v5_gn_3_132060' => 'lsa', 'Lsat_1_v5_gn_4_68941' => 'lsa', 'Lsat_1_v5_gn_5_95580' => 'lsa', 'Lsat_1_v5_gn_7_161' => 'lsa', 'Lsat_1_v5_gn_7_7041' => 'lsa', 'Lsat_1_v5_gn_9_33481' => 'lsa', 'Lsat_1_v5_gn_9_68260' => 'lsa', 'Manes.01G073100' => 'mes', 'Manes.01G266300' => 'mes', 'Manes.02G033300' => 'mes', 'Manes.05G017900' => 'mes', 'Manes.05G046100' => 'mes', 'Manes.08G080900' => 'mes', 'Manes.10G049400' => 'mes', 'Mapoly0009s0186' => 'mpo', 'Mapoly0036s0118' => 'mpo', 'Mapoly0101s0046' => 'mpo', 'MBI04_g30218_MAGBIO' => 'mbi', 'MBI04_g35564_MAGBIO' => 'mbi', 'MBI12_g34011_MAGBIO' => 'mbi', 'MBI14_g04655_MAGBIO' => 'mbi', 'MCO07G653' => 'mco', 'MCO10G173' => 'mco', 'MD01G1087100' => 'mdo', 'MD01G1104200' => 'mdo', 'MD02G1205100' => 'mdo', 'MD04G1079200' => 'mdo', 'MD04G1131400' => 'mdo', 'MD07G1121600' => 'mdo', 'MD07G1157300' => 'mdo', 'MD07G1171000' => 'mdo', 'MD12G1144500' => 'mdo', 'Medtr1g094610' => 'mtr', 'Medtr4g021795' => 'mtr', 'Medtr4g023760' => 'mtr', 'Medtr7g118050' => 'mtr', 'MELO3C005582.2' => 'cme', 'MELO3C005989.2' => 'cme', 'MELO3C006192.2' => 'cme', 'MELO3C009248.2' => 'cme', 'MELO3C019817.2' => 'cme', 'Migut.B01625' => 'egut', 'Migut.B01915' => 'egut', 'Migut.F01721' => 'egut', 'Migut.J00314' => 'egut', 'MSTRG.20742' => 'ama', 'MSTRG.8134' => 'ama', 'Nitab4.5_0000096g0010' => 'nta', 'Nitab4.5_0000202g0030' => 'nta', 'Nitab4.5_0000216g0370' => 'nta', 'Nitab4.5_0000457g0230' => 'nta', 'Nitab4.5_0001702g0170' => 'nta', 'Nitab4.5_0003607g0010' => 'nta', 'Nitab4.5_0004917g0020' => 'nta', 'Nitab4.5_0007059g0010' => 'nta', 'Nitab4.5_0007184g0010' => 'nta', 'Nitab4.5_0007346g0020' => 'nta', 'Nn1g00410' => 'nnu', 'Nn1g01252' => 'nnu', 'Nn2g11168' => 'nnu', 'Nn2g13403' => 'nnu', 'Nn2g13760' => 'nnu', 'Nn4g26380' => 'nnu', 'Oeu000806.2' => 'oeu', 'Oeu005788.1' => 'oeu', 'Oeu006900.3' => 'oeu', 'Oeu007797.1' => 'oeu', 'Oeu011932.1' => 'oeu', 'Oeu022739.1' => 'oeu', 'Oeu037918.1' => 'oeu', 'Oeu055490.2' => 'oeu', 'Os01g0844400' => 'osa', 'Os02g0819100' => 'osa', 'Os03g0804300' => 'osa', 'Os05g0458000' => 'osa', 'Os07g0467800' => 'osa', 'Os12g0602200' => 'osa', 'Peaxi162Scf00013g03444' => 'pax', 'Peaxi162Scf00094g01120' => 'pax', 'Peaxi162Scf00191g01211' => 'pax', 'Peaxi162Scf00238g01110' => 'pax', 'Peaxi162Scf00330g00719' => 'pax', 'Peaxi162Scf00627g00018' => 'pax', 'PGR031G2686' => 'pgr', 'PGR042G0809' => 'pgr', 'PGR142G0193' => 'pgr', 'PGSC0003DMG400011066' => 'stu', 'PGSC0003DMG400012041' => 'stu', 'PGSC0003DMG400013678' => 'stu', 'PGSC0003DMG400023477' => 'stu', 'PGSC0003DMG400025956' => 'stu', 'PGSC0003DMG401019151' => 'stu', 'Phvul.006G116400' => 'pvu', 'Phvul.007G097300' => 'pvu', 'Phvul.010G015000' => 'pvu', 'Phvul.010G083900' => 'pvu', 'Potri.001G117100' => 'ptr', 'Potri.002G147300' => 'ptr', 'Potri.003G115600' => 'ptr', 'Potri.006G087400' => 'ptr', 'Potri.010G226100' => 'ptr', 'Potri.014G069200' => 'ptr', 'Potri.014G104000' => 'ptr', 'Potri.016G100200' => 'ptr', 'Pp3c10_20450' => 'ppa', 'Pp3c1_42400' => 'ppa', 'Pp3c3_24390' => 'ppa', 'Pp3c3_2860' => 'ppa', 'PRCOL_00003193' => 'pco', 'Prupe.2G144500' => 'ppe', 'Prupe.2G195700' => 'ppe', 'Prupe.2G209800' => 'ppe', 'Prupe.5G080000' => 'ppe', 'Prupe.6G257900' => 'ppe', 'Psat3g001160' => 'psa', 'Psat6g181880' => 'psa', 'Psat7g233720' => 'psa', 'PSO063G7587' => 'pso', 'PSO339G2145' => 'pso', 'PSO339G3369' => 'pso', 'PSO478G2747' => 'pso', 'PSO513G0140' => 'pso', 'PSO782G1614' => 'pso', 'PSO782G4889' => 'pso', 'PSO782G5485' => 'pso', 'PSO801G0241' => 'pso', 'QL07p048854' => 'qlo', 'QL08p046745' => 'qlo', 'QL08p052606' => 'qlo', 'QL08p053414' => 'qlo', 'QL08p054868' => 'qlo', 'RcHm_v2.0_Chr1g0350251' => 'rch', 'RcHm_v2.0_Chr1g0360851' => 'rch', 'RcHm_v2.0_Chr1g0362791' => 'rch', 'RcHm_v2.0_Chr3g0466281' => 'rch', 'RcHm_v2.0_Chr7g0201481' => 'rch', 'Rhsim01G0148600' => 'rsi', 'Rhsim05G0194400' => 'rsi', 'Rhsim07G0000700' => 'rsi', 'Rhsim07G0000800' => 'rsi', 'Rhsim07G0027900' => 'rsi', 'Rhsim09G0149500' => 'rsi', 'RhsimUnG0186900' => 'rsi', 'Sabra01G0089900' => 'sbr', 'Sabra02G0114700' => 'sbr', 'Sabra02G0116300' => 'sbr', 'Sabra03G0080100' => 'sbr', 'Sabra08G0024300' => 'sbr', 'Sabra10G0174300' => 'sbr', 'Sabra14G0048900' => 'sbr', 'Sabra14G0076500' => 'sbr', 'SalBow5G2513' => 'sbo', 'Sc01g0002300' => 'sci', 'Sc01g0004450' => 'sci', 'Sc06g0001680' => 'sci', 'Sc23g0003580' => 'sci', 'Sed0000913' => 'sed', 'Sed0001655' => 'sed', 'Sed0007745' => 'sed', 'Sed0010951' => 'sed', 'Sed0017599' => 'sed', 'Sed0021405' => 'sed', 'Sed0022810' => 'sed', 'SEGI_07099' => 'sgi', 'SEGI_11931' => 'sgi', 'SEGI_13187' => 'sgi', 'SEGI_29958' => 'sgi', 'SEGI_36351' => 'sgi', 'SGA_v2.0_scaffold126G33770' => 'sas', 'SGA_v2.0_scaffold153G37003' => 'sas', 'SGA_v2.0_scaffold2G01359' => 'sas', 'SGA_v2.0_scaffold5G03064' => 'sas', 'SGA_v2.0_scaffold95G28903' => 'sas', 'SHI12701' => 'shi', 'SHI26410' => 'shi', 'SHI38997' => 'shi', 'SHI53759' => 'shi', 'SHI53886' => 'shi', 'SHI54714' => 'shi', 'SMO011G0041' => 'smo', 'SMO146G0251' => 'smo', 'SMO160G0004' => 'smo', 'SMO174G0057' => 'smo', 'SMO244G0089' => 'smo', 'SMO296G0011' => 'smo', 'Solyc01g091280.3' => 'sly', 'Solyc05g047610.3' => 'sly', 'Solyc05g047640.3' => 'sly', 'Solyc05g055630.3' => 'sly', 'Solyc10g018160.2' => 'sly', 'Solyc10g084820.2' => 'sly', 'Solyc10g086565.2' => 'sly', 'Sopen01g037030' => 'spe', 'Sopen05g027920' => 'spe', 'Sopen05g034070' => 'spe', 'Sopen10g007260' => 'spe', 'Sopen10g034260' => 'spe', 'Sopen10g035950' => 'spe', 'Sp3g07710' => 'spa', 'Sp4g27420' => 'spa', 'Sp5g02450' => 'spa', 'Sp6g01280' => 'spa', 'Sp6g38480' => 'spa', 'Sp7g20780' => 'spa', 'TAR374G1413' => 'tar', 'TAR623G1777' => 'tar', 'TAR629G2370' => 'tar', 'TAR633G1759' => 'tar', 'TAR636G3387' => 'tar', 'THA.LOC104802447' => 'tha', 'THA.LOC104813916' => 'tha', 'THA.LOC104816423' => 'tha', 'THA.LOC104817246' => 'tha', 'THA.LOC104825895' => 'tha', 'Thecc.01G335200' => 'tca', 'Thecc.01G377400' => 'tca', 'Thecc.03G262200' => 'tca', 'Thecc.05G036800' => 'tca', 'Thecc.10G080500' => 'tca', 'Thecc.10G080800' => 'tca', 'Thhalv10001560m.g' => 'esa', 'Thhalv10006120m.g' => 'esa', 'Thhalv10014375m.g' => 'esa', 'Thhalv10021264m.g' => 'esa', 'Thhalv10028856m.g' => 'esa', 'TPR.G1914' => 'tpr', 'TPR.G4757' => 'tpr', 'TPR.G5595' => 'tpr', 'TWI14G0952' => 'twi', 'TWI14G1307' => 'twi', 'TWI38G2143' => 'twi', 'TWI59G0826' => 'twi', 'TWI77G0527' => 'twi', 'TWI81G0150' => 'twi', 'unitig_21.g21018' => 'ugi', 'unitig_26.g9725' => 'ugi', 'unitig_744.g24653' => 'ugi', 'unitig_749.g13778' => 'ugi', 'unitig_899.g15035' => 'ugi', 'vmacro04296' => 'vma', 'vmacro04852' => 'vma', 'vmacro13404' => 'vma', 'vmacro20169' => 'vma', 'vmacro21014' => 'vma', 'VMungo0331G0237' => 'vmu', 'VMungo0331G0706' => 'vmu', 'VMungo0331G1361' => 'vmu', 'VMungo0331G1489' => 'vmu', 'VMungo0540G1037' => 'vmu', 'VMungo0720G2487' => 'vmu', 'VMungo0720G2721' => 'vmu', 'Zm00001eb086860' => 'zma', 'Zm00001eb104760' => 'zma', 'Zm00001eb148220' => 'zma', 'Zm00001eb259030' => 'zma', 'Zm00001eb289590' => 'zma', 'Zm00001eb420150' => 'zma' ) $gf_id = 'HOM05D000968' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000968' ) $data_identifier = 'HOM05D000968' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 19, 'bol' => (int) 9, 'bra' => (int) 12, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 5, 'ccan' => (int) 7, 'cde' => (int) 5, 'cfa' => (int) 8, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 4, 'dca' => (int) 5, 'din' => (int) 5, 'dzi' => (int) 12, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 25, 'fve' => (int) 5, 'gma' => (int) 9, 'ghi' => (int) 18, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 7, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 5, 'sun' => (int) 2, 'lal' => (int) 9, 'lja' => (int) 5, 'lonja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 9, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 2, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 3, 'stu' => (int) 6, 'pvu' => (int) 4, 'ptr' => (int) 8, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 3, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 1, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 5, 'sas' => (int) 5, 'shi' => (int) 6, 'smo' => (int) 6, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 3, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420150' $species_info = array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ) $local_species = 'cre' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000968', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p31690' => 'bna', 'A03p36040' => 'bna', 'A03p53730' => 'bna', 'A04p01410' => 'bna', 'A05p05420' => 'bna', 'A05p39630' => 'bna', 'A05p39640' => 'bna', 'A09p00970' => 'bna', 'A09p53060' => 'bna', 'A10p31890' => 'bna', 'Aa31LG10G15040' => 'aar', 'Aa31LG1G21090' => 'aar', 'Aa31LG1G26900' => 'aar', 'Aa31LG3G1820' => 'aar', 'Aa31LG5G1100' => 'aar', 'Aa31LG6G4740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2265' => 'aag', 'Actinidia07998' => 'ach', 'Actinidia11266' => 'ach', 'Actinidia12682' => 'ach', 'Actinidia26479' => 'ach', 'Actinidia31406' => 'ach', 'Actinidia32437' => 'ach', 'Actinidia38862' => 'ach', 'Ah.05g174230' => 'amhyb', 'Ah.05g179070' => 'amhyb', 'Ah.05g179090' => 'amhyb', 'Ah.12g059950' => 'amhyb', 'AL3G20480' => 'aly', 'AL4G44520' => 'aly', 'AL5G43110' => 'aly', 'AL6G13890' => 'aly', 'AL6G52620' => 'aly', 'AL7G30830' => 'aly', 'Aqoxy1G00899' => 'aox', 'Aqoxy5G04333' => 'aox', 'Aqoxy7G00641' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3IZ0NN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4EF6AW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W9P8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79GA3M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C43NQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFCU6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G95YVJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCHK29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LU1UG8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX91RN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGB4B1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8DA0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9H7JI' => 'arhy', 'AT3G09320' => 'ath', 'AT3G60800' => 'ath', 'AT4G00840' => 'ath', 'AT4G22750' => 'ath', 'AT5G04270' => 'ath', 'ATR0090G003' => 'atr', 'ATR0559G349' => 'atr', 'ATR0680G261' => 'atr', 'ATR0810G048' => 'atr', 'Atru.chr12.831' => 'acertr', 'Atru.chr5.303' => 'acertr', 'Atru.chr5.748' => 'acertr', 'Atru.chr8.1999' => 'acertr', 'Atru.chr9.1436' => 'acertr', 'AUR62004211' => 'cqu', 'AUR62004548' => 'cqu', 'AUR62013637' => 'cqu', 'AUR62022662' => 'cqu', 'AUR62025777' => 'cqu', 'AUR62042386' => 'cqu', 'BcaB01g02310' => 'bca', 'BcaB01g06062' => 'bca', 'BcaB02g08975' => 'bca', 'BcaB02g08980' => 'bca', 'BcaC01g04228' => 'bca', 'BcaC01g06830' => 'bca', 'BcaC02g10186' => 'bca', 'BcaC02g12214' => 'bca', 'BcaC04g24101' => 'bca', 'BcaC05g29520' => 'bca', 'BcaC05g29661' => 'bca', 'BcaC06g32130' => 'bca', 'BcaC06g32131' => 'bca', 'BcaC07g40601' => 'bca', 'BcaC07g42641' => 'bca', 'BcaNung01038' => 'bca', 'BcaNung01676' => 'bca', 'BcaNung02480' => 'bca', 'BcaNung07376' => 'bca', 'BolC3t16146H' => 'bol', 'BolC3t16637H' => 'bol', 'BolC4t22257H' => 'bol', 'BolC4t24728H' => 'bol', 'BolC5t34517H' => 'bol', 'BolC7t45703H' => 'bol', 'BolC8t51166H' => 'bol', 'BolC9t53038H' => 'bol', 'BolC9t60000H' => 'bol', 'BraA01t01345Z' => 'bra', 'BraA01t01346Z' => 'bra', 'BraA01t01348Z' => 'bra', 'BraA03t12347Z' => 'bra', 'BraA03t12775Z' => 'bra', 'BraA03t14439Z' => 'bra', 'BraA04t15860Z' => 'bra', 'BraA05t19511Z' => 'bra', 'BraA05t22746Z' => 'bra', 'BraA09t35767Z' => 'bra', 'BraA09t40732Z' => 'bra', 'BraA10t45233Z' => 'bra', 'C03p38720' => 'bna', 'C03p43680' => 'bna', 'C04p06350' => 'bna', 'C04p31800' => 'bna', 'C05p58680' => 'bna', 'C07p52110' => 'bna', 'C08p35760' => 'bna', 'C09p01050' => 'bna', 'C09p72600' => 'bna', 'CAN.G106.2' => 'can', 'CAN.G1482.1' => 'can', 'CAN.G324.12' => 'can', 'CAN.G388.20' => 'can', 'CAN.G412.7' => 'can', 'CAN.G694.32' => 'can', 'CAN.G92.12' => 'can', 'CANSAT11G2353' => 'cansat', 'CANSAT21G1398' => 'cansat', 'CANSAT56G2456' => 'cansat', 'CANSAT56G3031' => 'cansat', 'CANSAT56G4539' => 'cansat', 'CARHR083680' => 'chi', 'CARHR171190' => 'chi', 'CARHR209010' => 'chi', 'CARHR229680' => 'chi', 'CARHR249490' => 'chi', 'Carub.0003s0844' => 'cru', 'Carub.0005s2755' => 'cru', 'Carub.0006s0322' => 'cru', 'Carub.0006s3586' => 'cru', 'Carub.0007s1855' => 'cru', 'Ca_07808_v3' => 'car', 'Ca_09535_v3' => 'car', 'Ca_10548_v3' => 'car', 'Ca_19913_v3' => 'car', 'Ca_19916_v3' => 'car', 'Ca_19975_v3' => 'car', 'CBR_g22876' => 'cbr', 'CBR_g22879' => 'cbr', 'CBR_g38491' => 'cbr', 'CBR_g54185' => 'cbr', 'CBR_g54190' => 'cbr', 'Cc02_g11020' => 'ccan', 'Cc02_g23920' => 'ccan', 'Cc02_g39860' => 'ccan', 'Cc02_g39870' => 'ccan', 'Cc03_g06760' => 'ccan', 'Cc06_g02450' => 'ccan', 'Cc09_g09450' => 'ccan', 'CDE02G1959' => 'cde', 'CDE04G0600' => 'cde', 'CDE07G1996' => 'cde', 'CDE07G2078' => 'cde', 'CDE11G0611' => 'cde', 'Cfa001683' => 'cfa', 'Cfa001734' => 'cfa', 'Cfa001737' => 'cfa', 'Cfa003751' => 'cfa', 'Cfa012019' => 'cfa', 'Cfa017353' => 'cfa', 'Cfa017732' => 'cfa', 'Cfa022464' => 'cfa', 'Ciclev10012400m.g' => 'ccl', 'Ciclev10021242m.g' => 'ccl', 'Ciclev10021302m.g' => 'ccl', 'Ciclev10021463m.g' => 'ccl', 'Ciclev10032359m.g' => 'ccl', 'CiPaw.01G081000' => 'cil', 'CiPaw.01G262500' => 'cil', 'CiPaw.01G269800' => 'cil', 'CiPaw.02G168400' => 'cil', 'CiPaw.05G119500' => 'cil', 'CiPaw.11G147300' => 'cil', 'ClCG01G003630' => 'cla', 'ClCG05G000510' => 'cla', 'ClCG05G002300' => 'cla', 'ClCG08G007650' => 'cla', 'ClCG10G021250' => 'cla', 'COL.COLO4_06218' => 'col', 'COL.COLO4_12538' => 'col', 'COL.COLO4_14775' => 'col', 'COL.COLO4_23875' => 'col', 'Cpa.g.sc141.16' => 'cpa', 'Cpa.g.sc169.16' => 'cpa', 'Cpa.g.sc244.4' => 'cpa', 'Cpa.g.sc244.5' => 'cpa', 'Cpa.g.sc29.87' => 'cpa', 'Cpa.g.sc53.115' => 'cpa', 'Cre03.g207502' => 'cre', 'Cre06.g277000' => 'cre', 'Cre09.g394050' => 'cre', 'CsaV3_3G007680' => 'csa', 'CsaV3_3G009710' => 'csa', 'CsaV3_3G034790' => 'csa', 'CsaV3_5G003750' => 'csa', 'CsaV3_6G036620' => 'csa', 'CSS0002288' => 'camsi', 'CSS0011250' => 'camsi', 'CSS0021619' => 'camsi', 'CSS0046701' => 'camsi', 'DCAR_006420' => 'dca', 'DCAR_006865' => 'dca', 'DCAR_008558' => 'dca', 'DCAR_028754' => 'dca', 'DCAR_028755' => 'dca', 'Dinv31218' => 'din', 'Dinv32371' => 'din', 'Dinv34250' => 'din', 'Dinv37156' => 'din', 'Dinv43704' => 'din', 'Duzib093G1811' => 'dzi', 'Duzib106G1622' => 'dzi', 'Duzib114G0504' => 'dzi', 'Duzib128G0338' => 'dzi', 'Duzib128G1577' => 'dzi', 'Duzib133G0104' => 'dzi', 'Duzib133G1080' => 'dzi', 'Duzib138G0324' => 'dzi', 'Duzib138G0394' => 'dzi', 'Duzib205G0122' => 'dzi', 'Duzib268G1020' => 'dzi', 'Duzib268G1359' => 'dzi', 'ECA232G3929' => 'eca', 'ECA236G2210' => 'eca', 'ECA236G2287' => 'eca', 'ECA240G4568' => 'eca', 'ECA247G0894' => 'eca', 'EL10Ac1g00200' => 'bvu', 'EL10Ac1g00886' => 'bvu', 'EL10As1g23091' => 'bvu', 'EL10As1g23092' => 'bvu', 'Eucgr.A01284' => 'egr', 'Eucgr.A01285' => 'egr', 'Eucgr.D02456' => 'egr', 'Eucgr.E00018' => 'egr', 'Eucgr.E01439' => 'egr', 'Eucgr.G02859' => 'egr', 'FAN01G0168' => 'fan', 'FAN01G0453' => 'fan', 'FAN01G2761' => 'fan', 'FAN02G1239' => 'fan', 'FAN03G0645' => 'fan', 'FAN03G2707' => 'fan', 'FAN03G2978' => 'fan', 'FAN04G0227' => 'fan', 'FAN06G0091' => 'fan', 'FAN06G1418' => 'fan', 'FAN06G1512' => 'fan', 'FAN06G1986' => 'fan', 'FAN06G2905' => 'fan', 'FAN06G4325' => 'fan', 'FAN08G0033' => 'fan', 'FAN09G0642' => 'fan', 'FAN10G1763' => 'fan', 'FAN10G2026' => 'fan', 'FAN10G2513' => 'fan', 'FAN10G3402' => 'fan', 'FAN10G3564' => 'fan', 'FAN10G3987' => 'fan', 'FAN13G1490' => 'fan', 'FAN14G5857' => 'fan', 'FAN18G1188' => 'fan', 'FvH4_5g00750' => 'fve', 'FvH4_6g13410' => 'fve', 'FvH4_7g11740' => 'fve', 'FvH4_7g17410' => 'fve', 'FvH4_7g18860' => 'fve', 'Glyma.01G099100' => 'gma', 'Glyma.01G142300' => 'gma', 'Glyma.03G025500' => 'gma', 'Glyma.03G069700' => 'gma', 'Glyma.03G260000' => 'gma', 'Glyma.09G269800' => 'gma', 'Glyma.10G208700' => 'gma', 'Glyma.18G220400' => 'gma', 'Glyma.20G182000' => 'gma', 'Gohir.A01G221726' => 'ghi', 'Gohir.A07G134600' => 'ghi', 'Gohir.A07G146000' => 'ghi', 'Gohir.A08G173900' => 'ghi', 'Gohir.A09G194900' => 'ghi', 'Gohir.A10G204100' => 'ghi', 'Gohir.A11G080600' => 'ghi', 'Gohir.A11G327500' => 'ghi', 'Gohir.A12G101800' => 'ghi', 'Gohir.D01G211200' => 'ghi', 'Gohir.D07G139200' => 'ghi', 'Gohir.D07G152100' => 'ghi', 'Gohir.D08G192600' => 'ghi', 'Gohir.D09G189200' => 'ghi', 'Gohir.D10G212000' => 'ghi', 'Gohir.D11G085200' => 'ghi', 'Gohir.D11G346400' => 'ghi', 'Gohir.D12G104800' => 'ghi', 'Gorai.001G151300' => 'gra', 'Gorai.001G174100' => 'gra', 'Gorai.002G257000' => 'gra', 'Gorai.004G202600' => 'gra', 'Gorai.007G090900' => 'gra', 'Gorai.007G376700' => 'gra', 'Gorai.008G114100' => 'gra', 'Gorai.011G237900' => 'gra', 'GSVIVG01005450001' => 'vvi', 'GSVIVG01016232001' => 'vvi', 'GSVIVG01026157001' => 'vvi', 'GSVIVG01027419001' => 'vvi', 'GSVIVG01027631001' => 'vvi', 'GSVIVG01034143001' => 'vvi', 'HanXRQChr03g0093921' => 'han', 'HanXRQChr04g0120001' => 'han', 'HanXRQChr04g0122561' => 'han', 'HanXRQChr09g0246851' => 'han', 'HanXRQChr10g0293311' => 'han', 'HanXRQChr13g0425231' => 'han', 'HanXRQChr16g0532571' => 'han', 'Haze_09050' => 'cav', 'Haze_15715' => 'cav', 'Haze_15716' => 'cav', 'Haze_16803' => 'cav', 'Haze_16850' => 'cav', 'Hma1.2p1_0301F.1_g118655' => 'hma', 'Hma1.2p1_0309F.1_g120590' => 'hma', 'Hma1.2p1_0936F.1_g238900' => 'hma', 'Hma1.2p1_3552F.1_g336740' => 'hma', 'HPP92_003520' => 'vpl', 'HPP92_006628' => 'vpl', 'HPP92_006645' => 'vpl', 'HPP92_014669' => 'vpl', 'HPP92_015077' => 'vpl', 'Hund16742' => 'sun', 'Hund17022' => 'sun', 'Lalb_Chr02g0152131' => 'lal', 'Lalb_Chr05g0225371' => 'lal', 'Lalb_Chr07g0189841' => 'lal', 'Lalb_Chr07g0192961' => 'lal', 'Lalb_Chr12g0208221' => 'lal', 'Lalb_Chr13g0291211' => 'lal', 'Lalb_Chr13g0291781' => 'lal', 'Lalb_Chr18g0044651' => 'lal', 'Lalb_Chr21g0313731' => 'lal', 'Lj1g0022533' => 'lja', 'Lj2A18T50' => 'lonja', 'Lj2A92G93' => 'lonja', 'Lj3A965T73' => 'lonja', 'Lj3g0000673' => 'lja', 'Lj3g0002666' => 'lja', 'Lj4g0016985' => 'lja', 'Lj5g0003625' => 'lja', 'Lj7A529G36' => 'lonja', 'Lj9A569T49' => 'lonja', 'Lj9A604T63' => 'lonja', 'Lsat_1_v5_gn_3_132060' => 'lsa', 'Lsat_1_v5_gn_4_68941' => 'lsa', 'Lsat_1_v5_gn_5_95580' => 'lsa', 'Lsat_1_v5_gn_7_161' => 'lsa', 'Lsat_1_v5_gn_7_7041' => 'lsa', 'Lsat_1_v5_gn_9_33481' => 'lsa', 'Lsat_1_v5_gn_9_68260' => 'lsa', 'Manes.01G073100' => 'mes', 'Manes.01G266300' => 'mes', 'Manes.02G033300' => 'mes', 'Manes.05G017900' => 'mes', 'Manes.05G046100' => 'mes', 'Manes.08G080900' => 'mes', 'Manes.10G049400' => 'mes', 'Mapoly0009s0186' => 'mpo', 'Mapoly0036s0118' => 'mpo', 'Mapoly0101s0046' => 'mpo', 'MBI04_g30218_MAGBIO' => 'mbi', 'MBI04_g35564_MAGBIO' => 'mbi', 'MBI12_g34011_MAGBIO' => 'mbi', 'MBI14_g04655_MAGBIO' => 'mbi', 'MCO07G653' => 'mco', 'MCO10G173' => 'mco', 'MD01G1087100' => 'mdo', 'MD01G1104200' => 'mdo', 'MD02G1205100' => 'mdo', 'MD04G1079200' => 'mdo', 'MD04G1131400' => 'mdo', 'MD07G1121600' => 'mdo', 'MD07G1157300' => 'mdo', 'MD07G1171000' => 'mdo', 'MD12G1144500' => 'mdo', 'Medtr1g094610' => 'mtr', 'Medtr4g021795' => 'mtr', 'Medtr4g023760' => 'mtr', 'Medtr7g118050' => 'mtr', 'MELO3C005582.2' => 'cme', 'MELO3C005989.2' => 'cme', 'MELO3C006192.2' => 'cme', 'MELO3C009248.2' => 'cme', 'MELO3C019817.2' => 'cme', 'Migut.B01625' => 'egut', 'Migut.B01915' => 'egut', 'Migut.F01721' => 'egut', 'Migut.J00314' => 'egut', 'MSTRG.20742' => 'ama', 'MSTRG.8134' => 'ama', 'Nitab4.5_0000096g0010' => 'nta', 'Nitab4.5_0000202g0030' => 'nta', 'Nitab4.5_0000216g0370' => 'nta', 'Nitab4.5_0000457g0230' => 'nta', 'Nitab4.5_0001702g0170' => 'nta', 'Nitab4.5_0003607g0010' => 'nta', 'Nitab4.5_0004917g0020' => 'nta', 'Nitab4.5_0007059g0010' => 'nta', 'Nitab4.5_0007184g0010' => 'nta', 'Nitab4.5_0007346g0020' => 'nta', 'Nn1g00410' => 'nnu', 'Nn1g01252' => 'nnu', 'Nn2g11168' => 'nnu', 'Nn2g13403' => 'nnu', 'Nn2g13760' => 'nnu', 'Nn4g26380' => 'nnu', 'Oeu000806.2' => 'oeu', 'Oeu005788.1' => 'oeu', 'Oeu006900.3' => 'oeu', 'Oeu007797.1' => 'oeu', 'Oeu011932.1' => 'oeu', 'Oeu022739.1' => 'oeu', 'Oeu037918.1' => 'oeu', 'Oeu055490.2' => 'oeu', 'Os01g0844400' => 'osa', 'Os02g0819100' => 'osa', 'Os03g0804300' => 'osa', 'Os05g0458000' => 'osa', 'Os07g0467800' => 'osa', 'Os12g0602200' => 'osa', 'Peaxi162Scf00013g03444' => 'pax', 'Peaxi162Scf00094g01120' => 'pax', 'Peaxi162Scf00191g01211' => 'pax', 'Peaxi162Scf00238g01110' => 'pax', 'Peaxi162Scf00330g00719' => 'pax', 'Peaxi162Scf00627g00018' => 'pax', 'PGR031G2686' => 'pgr', 'PGR042G0809' => 'pgr', 'PGR142G0193' => 'pgr', 'PGSC0003DMG400011066' => 'stu', 'PGSC0003DMG400012041' => 'stu', 'PGSC0003DMG400013678' => 'stu', 'PGSC0003DMG400023477' => 'stu', 'PGSC0003DMG400025956' => 'stu', 'PGSC0003DMG401019151' => 'stu', 'Phvul.006G116400' => 'pvu', 'Phvul.007G097300' => 'pvu', 'Phvul.010G015000' => 'pvu', 'Phvul.010G083900' => 'pvu', 'Potri.001G117100' => 'ptr', 'Potri.002G147300' => 'ptr', 'Potri.003G115600' => 'ptr', 'Potri.006G087400' => 'ptr', 'Potri.010G226100' => 'ptr', 'Potri.014G069200' => 'ptr', 'Potri.014G104000' => 'ptr', 'Potri.016G100200' => 'ptr', 'Pp3c10_20450' => 'ppa', 'Pp3c1_42400' => 'ppa', 'Pp3c3_24390' => 'ppa', 'Pp3c3_2860' => 'ppa', 'PRCOL_00003193' => 'pco', 'Prupe.2G144500' => 'ppe', 'Prupe.2G195700' => 'ppe', 'Prupe.2G209800' => 'ppe', 'Prupe.5G080000' => 'ppe', 'Prupe.6G257900' => 'ppe', 'Psat3g001160' => 'psa', 'Psat6g181880' => 'psa', 'Psat7g233720' => 'psa', 'PSO063G7587' => 'pso', 'PSO339G2145' => 'pso', 'PSO339G3369' => 'pso', 'PSO478G2747' => 'pso', 'PSO513G0140' => 'pso', 'PSO782G1614' => 'pso', 'PSO782G4889' => 'pso', 'PSO782G5485' => 'pso', 'PSO801G0241' => 'pso', 'QL07p048854' => 'qlo', 'QL08p046745' => 'qlo', 'QL08p052606' => 'qlo', 'QL08p053414' => 'qlo', 'QL08p054868' => 'qlo', 'RcHm_v2.0_Chr1g0350251' => 'rch', 'RcHm_v2.0_Chr1g0360851' => 'rch', 'RcHm_v2.0_Chr1g0362791' => 'rch', 'RcHm_v2.0_Chr3g0466281' => 'rch', 'RcHm_v2.0_Chr7g0201481' => 'rch', 'Rhsim01G0148600' => 'rsi', 'Rhsim05G0194400' => 'rsi', 'Rhsim07G0000700' => 'rsi', 'Rhsim07G0000800' => 'rsi', 'Rhsim07G0027900' => 'rsi', 'Rhsim09G0149500' => 'rsi', 'RhsimUnG0186900' => 'rsi', 'Sabra01G0089900' => 'sbr', 'Sabra02G0114700' => 'sbr', 'Sabra02G0116300' => 'sbr', 'Sabra03G0080100' => 'sbr', 'Sabra08G0024300' => 'sbr', 'Sabra10G0174300' => 'sbr', 'Sabra14G0048900' => 'sbr', 'Sabra14G0076500' => 'sbr', 'SalBow5G2513' => 'sbo', 'Sc01g0002300' => 'sci', 'Sc01g0004450' => 'sci', 'Sc06g0001680' => 'sci', 'Sc23g0003580' => 'sci', 'Sed0000913' => 'sed', 'Sed0001655' => 'sed', 'Sed0007745' => 'sed', 'Sed0010951' => 'sed', 'Sed0017599' => 'sed', 'Sed0021405' => 'sed', 'Sed0022810' => 'sed', 'SEGI_07099' => 'sgi', 'SEGI_11931' => 'sgi', 'SEGI_13187' => 'sgi', 'SEGI_29958' => 'sgi', 'SEGI_36351' => 'sgi', 'SGA_v2.0_scaffold126G33770' => 'sas', 'SGA_v2.0_scaffold153G37003' => 'sas', 'SGA_v2.0_scaffold2G01359' => 'sas', 'SGA_v2.0_scaffold5G03064' => 'sas', 'SGA_v2.0_scaffold95G28903' => 'sas', 'SHI12701' => 'shi', 'SHI26410' => 'shi', 'SHI38997' => 'shi', 'SHI53759' => 'shi', 'SHI53886' => 'shi', 'SHI54714' => 'shi', 'SMO011G0041' => 'smo', 'SMO146G0251' => 'smo', 'SMO160G0004' => 'smo', 'SMO174G0057' => 'smo', 'SMO244G0089' => 'smo', 'SMO296G0011' => 'smo', 'Solyc01g091280.3' => 'sly', 'Solyc05g047610.3' => 'sly', 'Solyc05g047640.3' => 'sly', 'Solyc05g055630.3' => 'sly', 'Solyc10g018160.2' => 'sly', 'Solyc10g084820.2' => 'sly', 'Solyc10g086565.2' => 'sly', 'Sopen01g037030' => 'spe', 'Sopen05g027920' => 'spe', 'Sopen05g034070' => 'spe', 'Sopen10g007260' => 'spe', 'Sopen10g034260' => 'spe', 'Sopen10g035950' => 'spe', 'Sp3g07710' => 'spa', 'Sp4g27420' => 'spa', 'Sp5g02450' => 'spa', 'Sp6g01280' => 'spa', 'Sp6g38480' => 'spa', 'Sp7g20780' => 'spa', 'TAR374G1413' => 'tar', 'TAR623G1777' => 'tar', 'TAR629G2370' => 'tar', 'TAR633G1759' => 'tar', 'TAR636G3387' => 'tar', 'THA.LOC104802447' => 'tha', 'THA.LOC104813916' => 'tha', 'THA.LOC104816423' => 'tha', 'THA.LOC104817246' => 'tha', 'THA.LOC104825895' => 'tha', 'Thecc.01G335200' => 'tca', 'Thecc.01G377400' => 'tca', 'Thecc.03G262200' => 'tca', 'Thecc.05G036800' => 'tca', 'Thecc.10G080500' => 'tca', 'Thecc.10G080800' => 'tca', 'Thhalv10001560m.g' => 'esa', 'Thhalv10006120m.g' => 'esa', 'Thhalv10014375m.g' => 'esa', 'Thhalv10021264m.g' => 'esa', 'Thhalv10028856m.g' => 'esa', 'TPR.G1914' => 'tpr', 'TPR.G4757' => 'tpr', 'TPR.G5595' => 'tpr', 'TWI14G0952' => 'twi', 'TWI14G1307' => 'twi', 'TWI38G2143' => 'twi', 'TWI59G0826' => 'twi', 'TWI77G0527' => 'twi', 'TWI81G0150' => 'twi', 'unitig_21.g21018' => 'ugi', 'unitig_26.g9725' => 'ugi', 'unitig_744.g24653' => 'ugi', 'unitig_749.g13778' => 'ugi', 'unitig_899.g15035' => 'ugi', 'vmacro04296' => 'vma', 'vmacro04852' => 'vma', 'vmacro13404' => 'vma', 'vmacro20169' => 'vma', 'vmacro21014' => 'vma', 'VMungo0331G0237' => 'vmu', 'VMungo0331G0706' => 'vmu', 'VMungo0331G1361' => 'vmu', 'VMungo0331G1489' => 'vmu', 'VMungo0540G1037' => 'vmu', 'VMungo0720G2487' => 'vmu', 'VMungo0720G2721' => 'vmu', 'Zm00001eb086860' => 'zma', 'Zm00001eb104760' => 'zma', 'Zm00001eb148220' => 'zma', 'Zm00001eb259030' => 'zma', 'Zm00001eb289590' => 'zma', 'Zm00001eb420150' => 'zma' ), 'gf_id' => 'HOM05D000968', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000968' ), 'data_identifier' => 'HOM05D000968', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000968', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p31690' => 'bna', 'A03p36040' => 'bna', 'A03p53730' => 'bna', 'A04p01410' => 'bna', 'A05p05420' => 'bna', 'A05p39630' => 'bna', 'A05p39640' => 'bna', 'A09p00970' => 'bna', 'A09p53060' => 'bna', 'A10p31890' => 'bna', 'Aa31LG10G15040' => 'aar', 'Aa31LG1G21090' => 'aar', 'Aa31LG1G26900' => 'aar', 'Aa31LG3G1820' => 'aar', 'Aa31LG5G1100' => 'aar', 'Aa31LG6G4740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2265' => 'aag', 'Actinidia07998' => 'ach', 'Actinidia11266' => 'ach', 'Actinidia12682' => 'ach', 'Actinidia26479' => 'ach', 'Actinidia31406' => 'ach', 'Actinidia32437' => 'ach', 'Actinidia38862' => 'ach', 'Ah.05g174230' => 'amhyb', 'Ah.05g179070' => 'amhyb', 'Ah.05g179090' => 'amhyb', 'Ah.12g059950' => 'amhyb', 'AL3G20480' => 'aly', 'AL4G44520' => 'aly', 'AL5G43110' => 'aly', 'AL6G13890' => 'aly', 'AL6G52620' => 'aly', 'AL7G30830' => 'aly', 'Aqoxy1G00899' => 'aox', 'Aqoxy5G04333' => 'aox', 'Aqoxy7G00641' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3IZ0NN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4EF6AW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W9P8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79GA3M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C43NQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFCU6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G95YVJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCHK29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LU1UG8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX91RN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGB4B1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8DA0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9H7JI' => 'arhy', 'AT3G09320' => 'ath', 'AT3G60800' => 'ath', 'AT4G00840' => 'ath', 'AT4G22750' => 'ath', 'AT5G04270' => 'ath', 'ATR0090G003' => 'atr', 'ATR0559G349' => 'atr', 'ATR0680G261' => 'atr', 'ATR0810G048' => 'atr', 'Atru.chr12.831' => 'acertr', 'Atru.chr5.303' => 'acertr', 'Atru.chr5.748' => 'acertr', 'Atru.chr8.1999' => 'acertr', 'Atru.chr9.1436' => 'acertr', 'AUR62004211' => 'cqu', 'AUR62004548' => 'cqu', 'AUR62013637' => 'cqu', 'AUR62022662' => 'cqu', 'AUR62025777' => 'cqu', 'AUR62042386' => 'cqu', 'BcaB01g02310' => 'bca', 'BcaB01g06062' => 'bca', 'BcaB02g08975' => 'bca', 'BcaB02g08980' => 'bca', 'BcaC01g04228' => 'bca', 'BcaC01g06830' => 'bca', 'BcaC02g10186' => 'bca', 'BcaC02g12214' => 'bca', 'BcaC04g24101' => 'bca', 'BcaC05g29520' => 'bca', 'BcaC05g29661' => 'bca', 'BcaC06g32130' => 'bca', 'BcaC06g32131' => 'bca', 'BcaC07g40601' => 'bca', 'BcaC07g42641' => 'bca', 'BcaNung01038' => 'bca', 'BcaNung01676' => 'bca', 'BcaNung02480' => 'bca', 'BcaNung07376' => 'bca', 'BolC3t16146H' => 'bol', 'BolC3t16637H' => 'bol', 'BolC4t22257H' => 'bol', 'BolC4t24728H' => 'bol', 'BolC5t34517H' => 'bol', 'BolC7t45703H' => 'bol', 'BolC8t51166H' => 'bol', 'BolC9t53038H' => 'bol', 'BolC9t60000H' => 'bol', 'BraA01t01345Z' => 'bra', 'BraA01t01346Z' => 'bra', 'BraA01t01348Z' => 'bra', 'BraA03t12347Z' => 'bra', 'BraA03t12775Z' => 'bra', 'BraA03t14439Z' => 'bra', 'BraA04t15860Z' => 'bra', 'BraA05t19511Z' => 'bra', 'BraA05t22746Z' => 'bra', 'BraA09t35767Z' => 'bra', 'BraA09t40732Z' => 'bra', 'BraA10t45233Z' => 'bra', 'C03p38720' => 'bna', 'C03p43680' => 'bna', 'C04p06350' => 'bna', 'C04p31800' => 'bna', 'C05p58680' => 'bna', 'C07p52110' => 'bna', 'C08p35760' => 'bna', 'C09p01050' => 'bna', 'C09p72600' => 'bna', 'CAN.G106.2' => 'can', 'CAN.G1482.1' => 'can', 'CAN.G324.12' => 'can', 'CAN.G388.20' => 'can', 'CAN.G412.7' => 'can', 'CAN.G694.32' => 'can', 'CAN.G92.12' => 'can', 'CANSAT11G2353' => 'cansat', 'CANSAT21G1398' => 'cansat', 'CANSAT56G2456' => 'cansat', 'CANSAT56G3031' => 'cansat', 'CANSAT56G4539' => 'cansat', 'CARHR083680' => 'chi', 'CARHR171190' => 'chi', 'CARHR209010' => 'chi', 'CARHR229680' => 'chi', 'CARHR249490' => 'chi', 'Carub.0003s0844' => 'cru', 'Carub.0005s2755' => 'cru', 'Carub.0006s0322' => 'cru', 'Carub.0006s3586' => 'cru', 'Carub.0007s1855' => 'cru', 'Ca_07808_v3' => 'car', 'Ca_09535_v3' => 'car', 'Ca_10548_v3' => 'car', 'Ca_19913_v3' => 'car', 'Ca_19916_v3' => 'car', 'Ca_19975_v3' => 'car', 'CBR_g22876' => 'cbr', 'CBR_g22879' => 'cbr', 'CBR_g38491' => 'cbr', 'CBR_g54185' => 'cbr', 'CBR_g54190' => 'cbr', 'Cc02_g11020' => 'ccan', 'Cc02_g23920' => 'ccan', 'Cc02_g39860' => 'ccan', 'Cc02_g39870' => 'ccan', 'Cc03_g06760' => 'ccan', 'Cc06_g02450' => 'ccan', 'Cc09_g09450' => 'ccan', 'CDE02G1959' => 'cde', 'CDE04G0600' => 'cde', 'CDE07G1996' => 'cde', 'CDE07G2078' => 'cde', 'CDE11G0611' => 'cde', 'Cfa001683' => 'cfa', 'Cfa001734' => 'cfa', 'Cfa001737' => 'cfa', 'Cfa003751' => 'cfa', 'Cfa012019' => 'cfa', 'Cfa017353' => 'cfa', 'Cfa017732' => 'cfa', 'Cfa022464' => 'cfa', 'Ciclev10012400m.g' => 'ccl', 'Ciclev10021242m.g' => 'ccl', 'Ciclev10021302m.g' => 'ccl', 'Ciclev10021463m.g' => 'ccl', 'Ciclev10032359m.g' => 'ccl', 'CiPaw.01G081000' => 'cil', 'CiPaw.01G262500' => 'cil', 'CiPaw.01G269800' => 'cil', 'CiPaw.02G168400' => 'cil', 'CiPaw.05G119500' => 'cil', 'CiPaw.11G147300' => 'cil', 'ClCG01G003630' => 'cla', 'ClCG05G000510' => 'cla', 'ClCG05G002300' => 'cla', 'ClCG08G007650' => 'cla', 'ClCG10G021250' => 'cla', 'COL.COLO4_06218' => 'col', 'COL.COLO4_12538' => 'col', 'COL.COLO4_14775' => 'col', 'COL.COLO4_23875' => 'col', 'Cpa.g.sc141.16' => 'cpa', 'Cpa.g.sc169.16' => 'cpa', 'Cpa.g.sc244.4' => 'cpa', 'Cpa.g.sc244.5' => 'cpa', 'Cpa.g.sc29.87' => 'cpa', 'Cpa.g.sc53.115' => 'cpa', 'Cre03.g207502' => 'cre', 'Cre06.g277000' => 'cre', 'Cre09.g394050' => 'cre', 'CsaV3_3G007680' => 'csa', 'CsaV3_3G009710' => 'csa', 'CsaV3_3G034790' => 'csa', 'CsaV3_5G003750' => 'csa', 'CsaV3_6G036620' => 'csa', 'CSS0002288' => 'camsi', 'CSS0011250' => 'camsi', 'CSS0021619' => 'camsi', 'CSS0046701' => 'camsi', 'DCAR_006420' => 'dca', 'DCAR_006865' => 'dca', 'DCAR_008558' => 'dca', 'DCAR_028754' => 'dca', 'DCAR_028755' => 'dca', 'Dinv31218' => 'din', 'Dinv32371' => 'din', 'Dinv34250' => 'din', 'Dinv37156' => 'din', 'Dinv43704' => 'din', 'Duzib093G1811' => 'dzi', 'Duzib106G1622' => 'dzi', 'Duzib114G0504' => 'dzi', 'Duzib128G0338' => 'dzi', 'Duzib128G1577' => 'dzi', 'Duzib133G0104' => 'dzi', 'Duzib133G1080' => 'dzi', 'Duzib138G0324' => 'dzi', 'Duzib138G0394' => 'dzi', 'Duzib205G0122' => 'dzi', 'Duzib268G1020' => 'dzi', 'Duzib268G1359' => 'dzi', 'ECA232G3929' => 'eca', 'ECA236G2210' => 'eca', 'ECA236G2287' => 'eca', 'ECA240G4568' => 'eca', 'ECA247G0894' => 'eca', 'EL10Ac1g00200' => 'bvu', 'EL10Ac1g00886' => 'bvu', 'EL10As1g23091' => 'bvu', 'EL10As1g23092' => 'bvu', 'Eucgr.A01284' => 'egr', 'Eucgr.A01285' => 'egr', 'Eucgr.D02456' => 'egr', 'Eucgr.E00018' => 'egr', 'Eucgr.E01439' => 'egr', 'Eucgr.G02859' => 'egr', 'FAN01G0168' => 'fan', 'FAN01G0453' => 'fan', 'FAN01G2761' => 'fan', 'FAN02G1239' => 'fan', 'FAN03G0645' => 'fan', 'FAN03G2707' => 'fan', 'FAN03G2978' => 'fan', 'FAN04G0227' => 'fan', 'FAN06G0091' => 'fan', 'FAN06G1418' => 'fan', 'FAN06G1512' => 'fan', 'FAN06G1986' => 'fan', 'FAN06G2905' => 'fan', 'FAN06G4325' => 'fan', 'FAN08G0033' => 'fan', 'FAN09G0642' => 'fan', 'FAN10G1763' => 'fan', 'FAN10G2026' => 'fan', 'FAN10G2513' => 'fan', 'FAN10G3402' => 'fan', 'FAN10G3564' => 'fan', 'FAN10G3987' => 'fan', 'FAN13G1490' => 'fan', 'FAN14G5857' => 'fan', 'FAN18G1188' => 'fan', 'FvH4_5g00750' => 'fve', 'FvH4_6g13410' => 'fve', 'FvH4_7g11740' => 'fve', 'FvH4_7g17410' => 'fve', 'FvH4_7g18860' => 'fve', 'Glyma.01G099100' => 'gma', 'Glyma.01G142300' => 'gma', 'Glyma.03G025500' => 'gma', 'Glyma.03G069700' => 'gma', 'Glyma.03G260000' => 'gma', 'Glyma.09G269800' => 'gma', 'Glyma.10G208700' => 'gma', 'Glyma.18G220400' => 'gma', 'Glyma.20G182000' => 'gma', 'Gohir.A01G221726' => 'ghi', 'Gohir.A07G134600' => 'ghi', 'Gohir.A07G146000' => 'ghi', 'Gohir.A08G173900' => 'ghi', 'Gohir.A09G194900' => 'ghi', 'Gohir.A10G204100' => 'ghi', 'Gohir.A11G080600' => 'ghi', 'Gohir.A11G327500' => 'ghi', 'Gohir.A12G101800' => 'ghi', 'Gohir.D01G211200' => 'ghi', 'Gohir.D07G139200' => 'ghi', 'Gohir.D07G152100' => 'ghi', 'Gohir.D08G192600' => 'ghi', 'Gohir.D09G189200' => 'ghi', 'Gohir.D10G212000' => 'ghi', 'Gohir.D11G085200' => 'ghi', 'Gohir.D11G346400' => 'ghi', 'Gohir.D12G104800' => 'ghi', 'Gorai.001G151300' => 'gra', 'Gorai.001G174100' => 'gra', 'Gorai.002G257000' => 'gra', 'Gorai.004G202600' => 'gra', 'Gorai.007G090900' => 'gra', 'Gorai.007G376700' => 'gra', 'Gorai.008G114100' => 'gra', 'Gorai.011G237900' => 'gra', 'GSVIVG01005450001' => 'vvi', 'GSVIVG01016232001' => 'vvi', 'GSVIVG01026157001' => 'vvi', 'GSVIVG01027419001' => 'vvi', 'GSVIVG01027631001' => 'vvi', 'GSVIVG01034143001' => 'vvi', 'HanXRQChr03g0093921' => 'han', 'HanXRQChr04g0120001' => 'han', 'HanXRQChr04g0122561' => 'han', 'HanXRQChr09g0246851' => 'han', 'HanXRQChr10g0293311' => 'han', 'HanXRQChr13g0425231' => 'han', 'HanXRQChr16g0532571' => 'han', 'Haze_09050' => 'cav', 'Haze_15715' => 'cav', 'Haze_15716' => 'cav', 'Haze_16803' => 'cav', 'Haze_16850' => 'cav', 'Hma1.2p1_0301F.1_g118655' => 'hma', 'Hma1.2p1_0309F.1_g120590' => 'hma', 'Hma1.2p1_0936F.1_g238900' => 'hma', 'Hma1.2p1_3552F.1_g336740' => 'hma', 'HPP92_003520' => 'vpl', 'HPP92_006628' => 'vpl', 'HPP92_006645' => 'vpl', 'HPP92_014669' => 'vpl', 'HPP92_015077' => 'vpl', 'Hund16742' => 'sun', 'Hund17022' => 'sun', 'Lalb_Chr02g0152131' => 'lal', 'Lalb_Chr05g0225371' => 'lal', 'Lalb_Chr07g0189841' => 'lal', 'Lalb_Chr07g0192961' => 'lal', 'Lalb_Chr12g0208221' => 'lal', 'Lalb_Chr13g0291211' => 'lal', 'Lalb_Chr13g0291781' => 'lal', 'Lalb_Chr18g0044651' => 'lal', 'Lalb_Chr21g0313731' => 'lal', 'Lj1g0022533' => 'lja', 'Lj2A18T50' => 'lonja', 'Lj2A92G93' => 'lonja', 'Lj3A965T73' => 'lonja', 'Lj3g0000673' => 'lja', 'Lj3g0002666' => 'lja', 'Lj4g0016985' => 'lja', 'Lj5g0003625' => 'lja', 'Lj7A529G36' => 'lonja', 'Lj9A569T49' => 'lonja', 'Lj9A604T63' => 'lonja', 'Lsat_1_v5_gn_3_132060' => 'lsa', 'Lsat_1_v5_gn_4_68941' => 'lsa', 'Lsat_1_v5_gn_5_95580' => 'lsa', 'Lsat_1_v5_gn_7_161' => 'lsa', 'Lsat_1_v5_gn_7_7041' => 'lsa', 'Lsat_1_v5_gn_9_33481' => 'lsa', 'Lsat_1_v5_gn_9_68260' => 'lsa', 'Manes.01G073100' => 'mes', 'Manes.01G266300' => 'mes', 'Manes.02G033300' => 'mes', 'Manes.05G017900' => 'mes', 'Manes.05G046100' => 'mes', 'Manes.08G080900' => 'mes', 'Manes.10G049400' => 'mes', 'Mapoly0009s0186' => 'mpo', 'Mapoly0036s0118' => 'mpo', 'Mapoly0101s0046' => 'mpo', 'MBI04_g30218_MAGBIO' => 'mbi', 'MBI04_g35564_MAGBIO' => 'mbi', 'MBI12_g34011_MAGBIO' => 'mbi', 'MBI14_g04655_MAGBIO' => 'mbi', 'MCO07G653' => 'mco', 'MCO10G173' => 'mco', 'MD01G1087100' => 'mdo', 'MD01G1104200' => 'mdo', 'MD02G1205100' => 'mdo', 'MD04G1079200' => 'mdo', 'MD04G1131400' => 'mdo', 'MD07G1121600' => 'mdo', 'MD07G1157300' => 'mdo', 'MD07G1171000' => 'mdo', 'MD12G1144500' => 'mdo', 'Medtr1g094610' => 'mtr', 'Medtr4g021795' => 'mtr', 'Medtr4g023760' => 'mtr', 'Medtr7g118050' => 'mtr', 'MELO3C005582.2' => 'cme', 'MELO3C005989.2' => 'cme', 'MELO3C006192.2' => 'cme', 'MELO3C009248.2' => 'cme', 'MELO3C019817.2' => 'cme', 'Migut.B01625' => 'egut', 'Migut.B01915' => 'egut', 'Migut.F01721' => 'egut', 'Migut.J00314' => 'egut', 'MSTRG.20742' => 'ama', 'MSTRG.8134' => 'ama', 'Nitab4.5_0000096g0010' => 'nta', 'Nitab4.5_0000202g0030' => 'nta', 'Nitab4.5_0000216g0370' => 'nta', 'Nitab4.5_0000457g0230' => 'nta', 'Nitab4.5_0001702g0170' => 'nta', 'Nitab4.5_0003607g0010' => 'nta', 'Nitab4.5_0004917g0020' => 'nta', 'Nitab4.5_0007059g0010' => 'nta', 'Nitab4.5_0007184g0010' => 'nta', 'Nitab4.5_0007346g0020' => 'nta', 'Nn1g00410' => 'nnu', 'Nn1g01252' => 'nnu', 'Nn2g11168' => 'nnu', 'Nn2g13403' => 'nnu', 'Nn2g13760' => 'nnu', 'Nn4g26380' => 'nnu', 'Oeu000806.2' => 'oeu', 'Oeu005788.1' => 'oeu', 'Oeu006900.3' => 'oeu', 'Oeu007797.1' => 'oeu', 'Oeu011932.1' => 'oeu', 'Oeu022739.1' => 'oeu', 'Oeu037918.1' => 'oeu', 'Oeu055490.2' => 'oeu', 'Os01g0844400' => 'osa', 'Os02g0819100' => 'osa', 'Os03g0804300' => 'osa', 'Os05g0458000' => 'osa', 'Os07g0467800' => 'osa', 'Os12g0602200' => 'osa', 'Peaxi162Scf00013g03444' => 'pax', 'Peaxi162Scf00094g01120' => 'pax', 'Peaxi162Scf00191g01211' => 'pax', 'Peaxi162Scf00238g01110' => 'pax', 'Peaxi162Scf00330g00719' => 'pax', 'Peaxi162Scf00627g00018' => 'pax', 'PGR031G2686' => 'pgr', 'PGR042G0809' => 'pgr', 'PGR142G0193' => 'pgr', 'PGSC0003DMG400011066' => 'stu', 'PGSC0003DMG400012041' => 'stu', 'PGSC0003DMG400013678' => 'stu', 'PGSC0003DMG400023477' => 'stu', 'PGSC0003DMG400025956' => 'stu', 'PGSC0003DMG401019151' => 'stu', 'Phvul.006G116400' => 'pvu', 'Phvul.007G097300' => 'pvu', 'Phvul.010G015000' => 'pvu', 'Phvul.010G083900' => 'pvu', 'Potri.001G117100' => 'ptr', 'Potri.002G147300' => 'ptr', 'Potri.003G115600' => 'ptr', 'Potri.006G087400' => 'ptr', 'Potri.010G226100' => 'ptr', 'Potri.014G069200' => 'ptr', 'Potri.014G104000' => 'ptr', 'Potri.016G100200' => 'ptr', 'Pp3c10_20450' => 'ppa', 'Pp3c1_42400' => 'ppa', 'Pp3c3_24390' => 'ppa', 'Pp3c3_2860' => 'ppa', 'PRCOL_00003193' => 'pco', 'Prupe.2G144500' => 'ppe', 'Prupe.2G195700' => 'ppe', 'Prupe.2G209800' => 'ppe', 'Prupe.5G080000' => 'ppe', 'Prupe.6G257900' => 'ppe', 'Psat3g001160' => 'psa', 'Psat6g181880' => 'psa', 'Psat7g233720' => 'psa', 'PSO063G7587' => 'pso', 'PSO339G2145' => 'pso', 'PSO339G3369' => 'pso', 'PSO478G2747' => 'pso', 'PSO513G0140' => 'pso', 'PSO782G1614' => 'pso', 'PSO782G4889' => 'pso', 'PSO782G5485' => 'pso', 'PSO801G0241' => 'pso', 'QL07p048854' => 'qlo', 'QL08p046745' => 'qlo', 'QL08p052606' => 'qlo', 'QL08p053414' => 'qlo', 'QL08p054868' => 'qlo', 'RcHm_v2.0_Chr1g0350251' => 'rch', 'RcHm_v2.0_Chr1g0360851' => 'rch', 'RcHm_v2.0_Chr1g0362791' => 'rch', 'RcHm_v2.0_Chr3g0466281' => 'rch', 'RcHm_v2.0_Chr7g0201481' => 'rch', 'Rhsim01G0148600' => 'rsi', 'Rhsim05G0194400' => 'rsi', 'Rhsim07G0000700' => 'rsi', 'Rhsim07G0000800' => 'rsi', 'Rhsim07G0027900' => 'rsi', 'Rhsim09G0149500' => 'rsi', 'RhsimUnG0186900' => 'rsi', 'Sabra01G0089900' => 'sbr', 'Sabra02G0114700' => 'sbr', 'Sabra02G0116300' => 'sbr', 'Sabra03G0080100' => 'sbr', 'Sabra08G0024300' => 'sbr', 'Sabra10G0174300' => 'sbr', 'Sabra14G0048900' => 'sbr', 'Sabra14G0076500' => 'sbr', 'SalBow5G2513' => 'sbo', 'Sc01g0002300' => 'sci', 'Sc01g0004450' => 'sci', 'Sc06g0001680' => 'sci', 'Sc23g0003580' => 'sci', 'Sed0000913' => 'sed', 'Sed0001655' => 'sed', 'Sed0007745' => 'sed', 'Sed0010951' => 'sed', 'Sed0017599' => 'sed', 'Sed0021405' => 'sed', 'Sed0022810' => 'sed', 'SEGI_07099' => 'sgi', 'SEGI_11931' => 'sgi', 'SEGI_13187' => 'sgi', 'SEGI_29958' => 'sgi', 'SEGI_36351' => 'sgi', 'SGA_v2.0_scaffold126G33770' => 'sas', 'SGA_v2.0_scaffold153G37003' => 'sas', 'SGA_v2.0_scaffold2G01359' => 'sas', 'SGA_v2.0_scaffold5G03064' => 'sas', 'SGA_v2.0_scaffold95G28903' => 'sas', 'SHI12701' => 'shi', 'SHI26410' => 'shi', 'SHI38997' => 'shi', 'SHI53759' => 'shi', 'SHI53886' => 'shi', 'SHI54714' => 'shi', 'SMO011G0041' => 'smo', 'SMO146G0251' => 'smo', 'SMO160G0004' => 'smo', 'SMO174G0057' => 'smo', 'SMO244G0089' => 'smo', 'SMO296G0011' => 'smo', 'Solyc01g091280.3' => 'sly', 'Solyc05g047610.3' => 'sly', 'Solyc05g047640.3' => 'sly', 'Solyc05g055630.3' => 'sly', 'Solyc10g018160.2' => 'sly', 'Solyc10g084820.2' => 'sly', 'Solyc10g086565.2' => 'sly', 'Sopen01g037030' => 'spe', 'Sopen05g027920' => 'spe', 'Sopen05g034070' => 'spe', 'Sopen10g007260' => 'spe', 'Sopen10g034260' => 'spe', 'Sopen10g035950' => 'spe', 'Sp3g07710' => 'spa', 'Sp4g27420' => 'spa', 'Sp5g02450' => 'spa', 'Sp6g01280' => 'spa', 'Sp6g38480' => 'spa', 'Sp7g20780' => 'spa', 'TAR374G1413' => 'tar', 'TAR623G1777' => 'tar', 'TAR629G2370' => 'tar', 'TAR633G1759' => 'tar', 'TAR636G3387' => 'tar', 'THA.LOC104802447' => 'tha', 'THA.LOC104813916' => 'tha', 'THA.LOC104816423' => 'tha', 'THA.LOC104817246' => 'tha', 'THA.LOC104825895' => 'tha', 'Thecc.01G335200' => 'tca', 'Thecc.01G377400' => 'tca', 'Thecc.03G262200' => 'tca', 'Thecc.05G036800' => 'tca', 'Thecc.10G080500' => 'tca', 'Thecc.10G080800' => 'tca', 'Thhalv10001560m.g' => 'esa', 'Thhalv10006120m.g' => 'esa', 'Thhalv10014375m.g' => 'esa', 'Thhalv10021264m.g' => 'esa', 'Thhalv10028856m.g' => 'esa', 'TPR.G1914' => 'tpr', 'TPR.G4757' => 'tpr', 'TPR.G5595' => 'tpr', 'TWI14G0952' => 'twi', 'TWI14G1307' => 'twi', 'TWI38G2143' => 'twi', 'TWI59G0826' => 'twi', 'TWI77G0527' => 'twi', 'TWI81G0150' => 'twi', 'unitig_21.g21018' => 'ugi', 'unitig_26.g9725' => 'ugi', 'unitig_744.g24653' => 'ugi', 'unitig_749.g13778' => 'ugi', 'unitig_899.g15035' => 'ugi', 'vmacro04296' => 'vma', 'vmacro04852' => 'vma', 'vmacro13404' => 'vma', 'vmacro20169' => 'vma', 'vmacro21014' => 'vma', 'VMungo0331G0237' => 'vmu', 'VMungo0331G0706' => 'vmu', 'VMungo0331G1361' => 'vmu', 'VMungo0331G1489' => 'vmu', 'VMungo0540G1037' => 'vmu', 'VMungo0720G2487' => 'vmu', 'VMungo0720G2721' => 'vmu', 'Zm00001eb086860' => 'zma', 'Zm00001eb104760' => 'zma', 'Zm00001eb148220' => 'zma', 'Zm00001eb259030' => 'zma', 'Zm00001eb289590' => 'zma', 'Zm00001eb420150' => 'zma' ) $gf_id = 'HOM05D000968' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000968' ) $data_identifier = 'HOM05D000968' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 19, 'bol' => (int) 9, 'bra' => (int) 12, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 5, 'ccan' => (int) 7, 'cde' => (int) 5, 'cfa' => (int) 8, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 4, 'dca' => (int) 5, 'din' => (int) 5, 'dzi' => (int) 12, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 25, 'fve' => (int) 5, 'gma' => (int) 9, 'ghi' => (int) 18, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 7, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 5, 'sun' => (int) 2, 'lal' => (int) 9, 'lja' => (int) 5, 'lonja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 9, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 2, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 3, 'stu' => (int) 6, 'pvu' => (int) 4, 'ptr' => (int) 8, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 3, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 1, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 5, 'sas' => (int) 5, 'shi' => (int) 6, 'smo' => (int) 6, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 3, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420150' $species_info = array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ) $local_species = 'car' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000968', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p31690' => 'bna', 'A03p36040' => 'bna', 'A03p53730' => 'bna', 'A04p01410' => 'bna', 'A05p05420' => 'bna', 'A05p39630' => 'bna', 'A05p39640' => 'bna', 'A09p00970' => 'bna', 'A09p53060' => 'bna', 'A10p31890' => 'bna', 'Aa31LG10G15040' => 'aar', 'Aa31LG1G21090' => 'aar', 'Aa31LG1G26900' => 'aar', 'Aa31LG3G1820' => 'aar', 'Aa31LG5G1100' => 'aar', 'Aa31LG6G4740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2265' => 'aag', 'Actinidia07998' => 'ach', 'Actinidia11266' => 'ach', 'Actinidia12682' => 'ach', 'Actinidia26479' => 'ach', 'Actinidia31406' => 'ach', 'Actinidia32437' => 'ach', 'Actinidia38862' => 'ach', 'Ah.05g174230' => 'amhyb', 'Ah.05g179070' => 'amhyb', 'Ah.05g179090' => 'amhyb', 'Ah.12g059950' => 'amhyb', 'AL3G20480' => 'aly', 'AL4G44520' => 'aly', 'AL5G43110' => 'aly', 'AL6G13890' => 'aly', 'AL6G52620' => 'aly', 'AL7G30830' => 'aly', 'Aqoxy1G00899' => 'aox', 'Aqoxy5G04333' => 'aox', 'Aqoxy7G00641' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3IZ0NN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4EF6AW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W9P8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79GA3M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C43NQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFCU6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G95YVJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCHK29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LU1UG8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX91RN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGB4B1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8DA0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9H7JI' => 'arhy', 'AT3G09320' => 'ath', 'AT3G60800' => 'ath', 'AT4G00840' => 'ath', 'AT4G22750' => 'ath', 'AT5G04270' => 'ath', 'ATR0090G003' => 'atr', 'ATR0559G349' => 'atr', 'ATR0680G261' => 'atr', 'ATR0810G048' => 'atr', 'Atru.chr12.831' => 'acertr', 'Atru.chr5.303' => 'acertr', 'Atru.chr5.748' => 'acertr', 'Atru.chr8.1999' => 'acertr', 'Atru.chr9.1436' => 'acertr', 'AUR62004211' => 'cqu', 'AUR62004548' => 'cqu', 'AUR62013637' => 'cqu', 'AUR62022662' => 'cqu', 'AUR62025777' => 'cqu', 'AUR62042386' => 'cqu', 'BcaB01g02310' => 'bca', 'BcaB01g06062' => 'bca', 'BcaB02g08975' => 'bca', 'BcaB02g08980' => 'bca', 'BcaC01g04228' => 'bca', 'BcaC01g06830' => 'bca', 'BcaC02g10186' => 'bca', 'BcaC02g12214' => 'bca', 'BcaC04g24101' => 'bca', 'BcaC05g29520' => 'bca', 'BcaC05g29661' => 'bca', 'BcaC06g32130' => 'bca', 'BcaC06g32131' => 'bca', 'BcaC07g40601' => 'bca', 'BcaC07g42641' => 'bca', 'BcaNung01038' => 'bca', 'BcaNung01676' => 'bca', 'BcaNung02480' => 'bca', 'BcaNung07376' => 'bca', 'BolC3t16146H' => 'bol', 'BolC3t16637H' => 'bol', 'BolC4t22257H' => 'bol', 'BolC4t24728H' => 'bol', 'BolC5t34517H' => 'bol', 'BolC7t45703H' => 'bol', 'BolC8t51166H' => 'bol', 'BolC9t53038H' => 'bol', 'BolC9t60000H' => 'bol', 'BraA01t01345Z' => 'bra', 'BraA01t01346Z' => 'bra', 'BraA01t01348Z' => 'bra', 'BraA03t12347Z' => 'bra', 'BraA03t12775Z' => 'bra', 'BraA03t14439Z' => 'bra', 'BraA04t15860Z' => 'bra', 'BraA05t19511Z' => 'bra', 'BraA05t22746Z' => 'bra', 'BraA09t35767Z' => 'bra', 'BraA09t40732Z' => 'bra', 'BraA10t45233Z' => 'bra', 'C03p38720' => 'bna', 'C03p43680' => 'bna', 'C04p06350' => 'bna', 'C04p31800' => 'bna', 'C05p58680' => 'bna', 'C07p52110' => 'bna', 'C08p35760' => 'bna', 'C09p01050' => 'bna', 'C09p72600' => 'bna', 'CAN.G106.2' => 'can', 'CAN.G1482.1' => 'can', 'CAN.G324.12' => 'can', 'CAN.G388.20' => 'can', 'CAN.G412.7' => 'can', 'CAN.G694.32' => 'can', 'CAN.G92.12' => 'can', 'CANSAT11G2353' => 'cansat', 'CANSAT21G1398' => 'cansat', 'CANSAT56G2456' => 'cansat', 'CANSAT56G3031' => 'cansat', 'CANSAT56G4539' => 'cansat', 'CARHR083680' => 'chi', 'CARHR171190' => 'chi', 'CARHR209010' => 'chi', 'CARHR229680' => 'chi', 'CARHR249490' => 'chi', 'Carub.0003s0844' => 'cru', 'Carub.0005s2755' => 'cru', 'Carub.0006s0322' => 'cru', 'Carub.0006s3586' => 'cru', 'Carub.0007s1855' => 'cru', 'Ca_07808_v3' => 'car', 'Ca_09535_v3' => 'car', 'Ca_10548_v3' => 'car', 'Ca_19913_v3' => 'car', 'Ca_19916_v3' => 'car', 'Ca_19975_v3' => 'car', 'CBR_g22876' => 'cbr', 'CBR_g22879' => 'cbr', 'CBR_g38491' => 'cbr', 'CBR_g54185' => 'cbr', 'CBR_g54190' => 'cbr', 'Cc02_g11020' => 'ccan', 'Cc02_g23920' => 'ccan', 'Cc02_g39860' => 'ccan', 'Cc02_g39870' => 'ccan', 'Cc03_g06760' => 'ccan', 'Cc06_g02450' => 'ccan', 'Cc09_g09450' => 'ccan', 'CDE02G1959' => 'cde', 'CDE04G0600' => 'cde', 'CDE07G1996' => 'cde', 'CDE07G2078' => 'cde', 'CDE11G0611' => 'cde', 'Cfa001683' => 'cfa', 'Cfa001734' => 'cfa', 'Cfa001737' => 'cfa', 'Cfa003751' => 'cfa', 'Cfa012019' => 'cfa', 'Cfa017353' => 'cfa', 'Cfa017732' => 'cfa', 'Cfa022464' => 'cfa', 'Ciclev10012400m.g' => 'ccl', 'Ciclev10021242m.g' => 'ccl', 'Ciclev10021302m.g' => 'ccl', 'Ciclev10021463m.g' => 'ccl', 'Ciclev10032359m.g' => 'ccl', 'CiPaw.01G081000' => 'cil', 'CiPaw.01G262500' => 'cil', 'CiPaw.01G269800' => 'cil', 'CiPaw.02G168400' => 'cil', 'CiPaw.05G119500' => 'cil', 'CiPaw.11G147300' => 'cil', 'ClCG01G003630' => 'cla', 'ClCG05G000510' => 'cla', 'ClCG05G002300' => 'cla', 'ClCG08G007650' => 'cla', 'ClCG10G021250' => 'cla', 'COL.COLO4_06218' => 'col', 'COL.COLO4_12538' => 'col', 'COL.COLO4_14775' => 'col', 'COL.COLO4_23875' => 'col', 'Cpa.g.sc141.16' => 'cpa', 'Cpa.g.sc169.16' => 'cpa', 'Cpa.g.sc244.4' => 'cpa', 'Cpa.g.sc244.5' => 'cpa', 'Cpa.g.sc29.87' => 'cpa', 'Cpa.g.sc53.115' => 'cpa', 'Cre03.g207502' => 'cre', 'Cre06.g277000' => 'cre', 'Cre09.g394050' => 'cre', 'CsaV3_3G007680' => 'csa', 'CsaV3_3G009710' => 'csa', 'CsaV3_3G034790' => 'csa', 'CsaV3_5G003750' => 'csa', 'CsaV3_6G036620' => 'csa', 'CSS0002288' => 'camsi', 'CSS0011250' => 'camsi', 'CSS0021619' => 'camsi', 'CSS0046701' => 'camsi', 'DCAR_006420' => 'dca', 'DCAR_006865' => 'dca', 'DCAR_008558' => 'dca', 'DCAR_028754' => 'dca', 'DCAR_028755' => 'dca', 'Dinv31218' => 'din', 'Dinv32371' => 'din', 'Dinv34250' => 'din', 'Dinv37156' => 'din', 'Dinv43704' => 'din', 'Duzib093G1811' => 'dzi', 'Duzib106G1622' => 'dzi', 'Duzib114G0504' => 'dzi', 'Duzib128G0338' => 'dzi', 'Duzib128G1577' => 'dzi', 'Duzib133G0104' => 'dzi', 'Duzib133G1080' => 'dzi', 'Duzib138G0324' => 'dzi', 'Duzib138G0394' => 'dzi', 'Duzib205G0122' => 'dzi', 'Duzib268G1020' => 'dzi', 'Duzib268G1359' => 'dzi', 'ECA232G3929' => 'eca', 'ECA236G2210' => 'eca', 'ECA236G2287' => 'eca', 'ECA240G4568' => 'eca', 'ECA247G0894' => 'eca', 'EL10Ac1g00200' => 'bvu', 'EL10Ac1g00886' => 'bvu', 'EL10As1g23091' => 'bvu', 'EL10As1g23092' => 'bvu', 'Eucgr.A01284' => 'egr', 'Eucgr.A01285' => 'egr', 'Eucgr.D02456' => 'egr', 'Eucgr.E00018' => 'egr', 'Eucgr.E01439' => 'egr', 'Eucgr.G02859' => 'egr', 'FAN01G0168' => 'fan', 'FAN01G0453' => 'fan', 'FAN01G2761' => 'fan', 'FAN02G1239' => 'fan', 'FAN03G0645' => 'fan', 'FAN03G2707' => 'fan', 'FAN03G2978' => 'fan', 'FAN04G0227' => 'fan', 'FAN06G0091' => 'fan', 'FAN06G1418' => 'fan', 'FAN06G1512' => 'fan', 'FAN06G1986' => 'fan', 'FAN06G2905' => 'fan', 'FAN06G4325' => 'fan', 'FAN08G0033' => 'fan', 'FAN09G0642' => 'fan', 'FAN10G1763' => 'fan', 'FAN10G2026' => 'fan', 'FAN10G2513' => 'fan', 'FAN10G3402' => 'fan', 'FAN10G3564' => 'fan', 'FAN10G3987' => 'fan', 'FAN13G1490' => 'fan', 'FAN14G5857' => 'fan', 'FAN18G1188' => 'fan', 'FvH4_5g00750' => 'fve', 'FvH4_6g13410' => 'fve', 'FvH4_7g11740' => 'fve', 'FvH4_7g17410' => 'fve', 'FvH4_7g18860' => 'fve', 'Glyma.01G099100' => 'gma', 'Glyma.01G142300' => 'gma', 'Glyma.03G025500' => 'gma', 'Glyma.03G069700' => 'gma', 'Glyma.03G260000' => 'gma', 'Glyma.09G269800' => 'gma', 'Glyma.10G208700' => 'gma', 'Glyma.18G220400' => 'gma', 'Glyma.20G182000' => 'gma', 'Gohir.A01G221726' => 'ghi', 'Gohir.A07G134600' => 'ghi', 'Gohir.A07G146000' => 'ghi', 'Gohir.A08G173900' => 'ghi', 'Gohir.A09G194900' => 'ghi', 'Gohir.A10G204100' => 'ghi', 'Gohir.A11G080600' => 'ghi', 'Gohir.A11G327500' => 'ghi', 'Gohir.A12G101800' => 'ghi', 'Gohir.D01G211200' => 'ghi', 'Gohir.D07G139200' => 'ghi', 'Gohir.D07G152100' => 'ghi', 'Gohir.D08G192600' => 'ghi', 'Gohir.D09G189200' => 'ghi', 'Gohir.D10G212000' => 'ghi', 'Gohir.D11G085200' => 'ghi', 'Gohir.D11G346400' => 'ghi', 'Gohir.D12G104800' => 'ghi', 'Gorai.001G151300' => 'gra', 'Gorai.001G174100' => 'gra', 'Gorai.002G257000' => 'gra', 'Gorai.004G202600' => 'gra', 'Gorai.007G090900' => 'gra', 'Gorai.007G376700' => 'gra', 'Gorai.008G114100' => 'gra', 'Gorai.011G237900' => 'gra', 'GSVIVG01005450001' => 'vvi', 'GSVIVG01016232001' => 'vvi', 'GSVIVG01026157001' => 'vvi', 'GSVIVG01027419001' => 'vvi', 'GSVIVG01027631001' => 'vvi', 'GSVIVG01034143001' => 'vvi', 'HanXRQChr03g0093921' => 'han', 'HanXRQChr04g0120001' => 'han', 'HanXRQChr04g0122561' => 'han', 'HanXRQChr09g0246851' => 'han', 'HanXRQChr10g0293311' => 'han', 'HanXRQChr13g0425231' => 'han', 'HanXRQChr16g0532571' => 'han', 'Haze_09050' => 'cav', 'Haze_15715' => 'cav', 'Haze_15716' => 'cav', 'Haze_16803' => 'cav', 'Haze_16850' => 'cav', 'Hma1.2p1_0301F.1_g118655' => 'hma', 'Hma1.2p1_0309F.1_g120590' => 'hma', 'Hma1.2p1_0936F.1_g238900' => 'hma', 'Hma1.2p1_3552F.1_g336740' => 'hma', 'HPP92_003520' => 'vpl', 'HPP92_006628' => 'vpl', 'HPP92_006645' => 'vpl', 'HPP92_014669' => 'vpl', 'HPP92_015077' => 'vpl', 'Hund16742' => 'sun', 'Hund17022' => 'sun', 'Lalb_Chr02g0152131' => 'lal', 'Lalb_Chr05g0225371' => 'lal', 'Lalb_Chr07g0189841' => 'lal', 'Lalb_Chr07g0192961' => 'lal', 'Lalb_Chr12g0208221' => 'lal', 'Lalb_Chr13g0291211' => 'lal', 'Lalb_Chr13g0291781' => 'lal', 'Lalb_Chr18g0044651' => 'lal', 'Lalb_Chr21g0313731' => 'lal', 'Lj1g0022533' => 'lja', 'Lj2A18T50' => 'lonja', 'Lj2A92G93' => 'lonja', 'Lj3A965T73' => 'lonja', 'Lj3g0000673' => 'lja', 'Lj3g0002666' => 'lja', 'Lj4g0016985' => 'lja', 'Lj5g0003625' => 'lja', 'Lj7A529G36' => 'lonja', 'Lj9A569T49' => 'lonja', 'Lj9A604T63' => 'lonja', 'Lsat_1_v5_gn_3_132060' => 'lsa', 'Lsat_1_v5_gn_4_68941' => 'lsa', 'Lsat_1_v5_gn_5_95580' => 'lsa', 'Lsat_1_v5_gn_7_161' => 'lsa', 'Lsat_1_v5_gn_7_7041' => 'lsa', 'Lsat_1_v5_gn_9_33481' => 'lsa', 'Lsat_1_v5_gn_9_68260' => 'lsa', 'Manes.01G073100' => 'mes', 'Manes.01G266300' => 'mes', 'Manes.02G033300' => 'mes', 'Manes.05G017900' => 'mes', 'Manes.05G046100' => 'mes', 'Manes.08G080900' => 'mes', 'Manes.10G049400' => 'mes', 'Mapoly0009s0186' => 'mpo', 'Mapoly0036s0118' => 'mpo', 'Mapoly0101s0046' => 'mpo', 'MBI04_g30218_MAGBIO' => 'mbi', 'MBI04_g35564_MAGBIO' => 'mbi', 'MBI12_g34011_MAGBIO' => 'mbi', 'MBI14_g04655_MAGBIO' => 'mbi', 'MCO07G653' => 'mco', 'MCO10G173' => 'mco', 'MD01G1087100' => 'mdo', 'MD01G1104200' => 'mdo', 'MD02G1205100' => 'mdo', 'MD04G1079200' => 'mdo', 'MD04G1131400' => 'mdo', 'MD07G1121600' => 'mdo', 'MD07G1157300' => 'mdo', 'MD07G1171000' => 'mdo', 'MD12G1144500' => 'mdo', 'Medtr1g094610' => 'mtr', 'Medtr4g021795' => 'mtr', 'Medtr4g023760' => 'mtr', 'Medtr7g118050' => 'mtr', 'MELO3C005582.2' => 'cme', 'MELO3C005989.2' => 'cme', 'MELO3C006192.2' => 'cme', 'MELO3C009248.2' => 'cme', 'MELO3C019817.2' => 'cme', 'Migut.B01625' => 'egut', 'Migut.B01915' => 'egut', 'Migut.F01721' => 'egut', 'Migut.J00314' => 'egut', 'MSTRG.20742' => 'ama', 'MSTRG.8134' => 'ama', 'Nitab4.5_0000096g0010' => 'nta', 'Nitab4.5_0000202g0030' => 'nta', 'Nitab4.5_0000216g0370' => 'nta', 'Nitab4.5_0000457g0230' => 'nta', 'Nitab4.5_0001702g0170' => 'nta', 'Nitab4.5_0003607g0010' => 'nta', 'Nitab4.5_0004917g0020' => 'nta', 'Nitab4.5_0007059g0010' => 'nta', 'Nitab4.5_0007184g0010' => 'nta', 'Nitab4.5_0007346g0020' => 'nta', 'Nn1g00410' => 'nnu', 'Nn1g01252' => 'nnu', 'Nn2g11168' => 'nnu', 'Nn2g13403' => 'nnu', 'Nn2g13760' => 'nnu', 'Nn4g26380' => 'nnu', 'Oeu000806.2' => 'oeu', 'Oeu005788.1' => 'oeu', 'Oeu006900.3' => 'oeu', 'Oeu007797.1' => 'oeu', 'Oeu011932.1' => 'oeu', 'Oeu022739.1' => 'oeu', 'Oeu037918.1' => 'oeu', 'Oeu055490.2' => 'oeu', 'Os01g0844400' => 'osa', 'Os02g0819100' => 'osa', 'Os03g0804300' => 'osa', 'Os05g0458000' => 'osa', 'Os07g0467800' => 'osa', 'Os12g0602200' => 'osa', 'Peaxi162Scf00013g03444' => 'pax', 'Peaxi162Scf00094g01120' => 'pax', 'Peaxi162Scf00191g01211' => 'pax', 'Peaxi162Scf00238g01110' => 'pax', 'Peaxi162Scf00330g00719' => 'pax', 'Peaxi162Scf00627g00018' => 'pax', 'PGR031G2686' => 'pgr', 'PGR042G0809' => 'pgr', 'PGR142G0193' => 'pgr', 'PGSC0003DMG400011066' => 'stu', 'PGSC0003DMG400012041' => 'stu', 'PGSC0003DMG400013678' => 'stu', 'PGSC0003DMG400023477' => 'stu', 'PGSC0003DMG400025956' => 'stu', 'PGSC0003DMG401019151' => 'stu', 'Phvul.006G116400' => 'pvu', 'Phvul.007G097300' => 'pvu', 'Phvul.010G015000' => 'pvu', 'Phvul.010G083900' => 'pvu', 'Potri.001G117100' => 'ptr', 'Potri.002G147300' => 'ptr', 'Potri.003G115600' => 'ptr', 'Potri.006G087400' => 'ptr', 'Potri.010G226100' => 'ptr', 'Potri.014G069200' => 'ptr', 'Potri.014G104000' => 'ptr', 'Potri.016G100200' => 'ptr', 'Pp3c10_20450' => 'ppa', 'Pp3c1_42400' => 'ppa', 'Pp3c3_24390' => 'ppa', 'Pp3c3_2860' => 'ppa', 'PRCOL_00003193' => 'pco', 'Prupe.2G144500' => 'ppe', 'Prupe.2G195700' => 'ppe', 'Prupe.2G209800' => 'ppe', 'Prupe.5G080000' => 'ppe', 'Prupe.6G257900' => 'ppe', 'Psat3g001160' => 'psa', 'Psat6g181880' => 'psa', 'Psat7g233720' => 'psa', 'PSO063G7587' => 'pso', 'PSO339G2145' => 'pso', 'PSO339G3369' => 'pso', 'PSO478G2747' => 'pso', 'PSO513G0140' => 'pso', 'PSO782G1614' => 'pso', 'PSO782G4889' => 'pso', 'PSO782G5485' => 'pso', 'PSO801G0241' => 'pso', 'QL07p048854' => 'qlo', 'QL08p046745' => 'qlo', 'QL08p052606' => 'qlo', 'QL08p053414' => 'qlo', 'QL08p054868' => 'qlo', 'RcHm_v2.0_Chr1g0350251' => 'rch', 'RcHm_v2.0_Chr1g0360851' => 'rch', 'RcHm_v2.0_Chr1g0362791' => 'rch', 'RcHm_v2.0_Chr3g0466281' => 'rch', 'RcHm_v2.0_Chr7g0201481' => 'rch', 'Rhsim01G0148600' => 'rsi', 'Rhsim05G0194400' => 'rsi', 'Rhsim07G0000700' => 'rsi', 'Rhsim07G0000800' => 'rsi', 'Rhsim07G0027900' => 'rsi', 'Rhsim09G0149500' => 'rsi', 'RhsimUnG0186900' => 'rsi', 'Sabra01G0089900' => 'sbr', 'Sabra02G0114700' => 'sbr', 'Sabra02G0116300' => 'sbr', 'Sabra03G0080100' => 'sbr', 'Sabra08G0024300' => 'sbr', 'Sabra10G0174300' => 'sbr', 'Sabra14G0048900' => 'sbr', 'Sabra14G0076500' => 'sbr', 'SalBow5G2513' => 'sbo', 'Sc01g0002300' => 'sci', 'Sc01g0004450' => 'sci', 'Sc06g0001680' => 'sci', 'Sc23g0003580' => 'sci', 'Sed0000913' => 'sed', 'Sed0001655' => 'sed', 'Sed0007745' => 'sed', 'Sed0010951' => 'sed', 'Sed0017599' => 'sed', 'Sed0021405' => 'sed', 'Sed0022810' => 'sed', 'SEGI_07099' => 'sgi', 'SEGI_11931' => 'sgi', 'SEGI_13187' => 'sgi', 'SEGI_29958' => 'sgi', 'SEGI_36351' => 'sgi', 'SGA_v2.0_scaffold126G33770' => 'sas', 'SGA_v2.0_scaffold153G37003' => 'sas', 'SGA_v2.0_scaffold2G01359' => 'sas', 'SGA_v2.0_scaffold5G03064' => 'sas', 'SGA_v2.0_scaffold95G28903' => 'sas', 'SHI12701' => 'shi', 'SHI26410' => 'shi', 'SHI38997' => 'shi', 'SHI53759' => 'shi', 'SHI53886' => 'shi', 'SHI54714' => 'shi', 'SMO011G0041' => 'smo', 'SMO146G0251' => 'smo', 'SMO160G0004' => 'smo', 'SMO174G0057' => 'smo', 'SMO244G0089' => 'smo', 'SMO296G0011' => 'smo', 'Solyc01g091280.3' => 'sly', 'Solyc05g047610.3' => 'sly', 'Solyc05g047640.3' => 'sly', 'Solyc05g055630.3' => 'sly', 'Solyc10g018160.2' => 'sly', 'Solyc10g084820.2' => 'sly', 'Solyc10g086565.2' => 'sly', 'Sopen01g037030' => 'spe', 'Sopen05g027920' => 'spe', 'Sopen05g034070' => 'spe', 'Sopen10g007260' => 'spe', 'Sopen10g034260' => 'spe', 'Sopen10g035950' => 'spe', 'Sp3g07710' => 'spa', 'Sp4g27420' => 'spa', 'Sp5g02450' => 'spa', 'Sp6g01280' => 'spa', 'Sp6g38480' => 'spa', 'Sp7g20780' => 'spa', 'TAR374G1413' => 'tar', 'TAR623G1777' => 'tar', 'TAR629G2370' => 'tar', 'TAR633G1759' => 'tar', 'TAR636G3387' => 'tar', 'THA.LOC104802447' => 'tha', 'THA.LOC104813916' => 'tha', 'THA.LOC104816423' => 'tha', 'THA.LOC104817246' => 'tha', 'THA.LOC104825895' => 'tha', 'Thecc.01G335200' => 'tca', 'Thecc.01G377400' => 'tca', 'Thecc.03G262200' => 'tca', 'Thecc.05G036800' => 'tca', 'Thecc.10G080500' => 'tca', 'Thecc.10G080800' => 'tca', 'Thhalv10001560m.g' => 'esa', 'Thhalv10006120m.g' => 'esa', 'Thhalv10014375m.g' => 'esa', 'Thhalv10021264m.g' => 'esa', 'Thhalv10028856m.g' => 'esa', 'TPR.G1914' => 'tpr', 'TPR.G4757' => 'tpr', 'TPR.G5595' => 'tpr', 'TWI14G0952' => 'twi', 'TWI14G1307' => 'twi', 'TWI38G2143' => 'twi', 'TWI59G0826' => 'twi', 'TWI77G0527' => 'twi', 'TWI81G0150' => 'twi', 'unitig_21.g21018' => 'ugi', 'unitig_26.g9725' => 'ugi', 'unitig_744.g24653' => 'ugi', 'unitig_749.g13778' => 'ugi', 'unitig_899.g15035' => 'ugi', 'vmacro04296' => 'vma', 'vmacro04852' => 'vma', 'vmacro13404' => 'vma', 'vmacro20169' => 'vma', 'vmacro21014' => 'vma', 'VMungo0331G0237' => 'vmu', 'VMungo0331G0706' => 'vmu', 'VMungo0331G1361' => 'vmu', 'VMungo0331G1489' => 'vmu', 'VMungo0540G1037' => 'vmu', 'VMungo0720G2487' => 'vmu', 'VMungo0720G2721' => 'vmu', 'Zm00001eb086860' => 'zma', 'Zm00001eb104760' => 'zma', 'Zm00001eb148220' => 'zma', 'Zm00001eb259030' => 'zma', 'Zm00001eb289590' => 'zma', 'Zm00001eb420150' => 'zma' ), 'gf_id' => 'HOM05D000968', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000968' ), 'data_identifier' => 'HOM05D000968', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000968', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p31690' => 'bna', 'A03p36040' => 'bna', 'A03p53730' => 'bna', 'A04p01410' => 'bna', 'A05p05420' => 'bna', 'A05p39630' => 'bna', 'A05p39640' => 'bna', 'A09p00970' => 'bna', 'A09p53060' => 'bna', 'A10p31890' => 'bna', 'Aa31LG10G15040' => 'aar', 'Aa31LG1G21090' => 'aar', 'Aa31LG1G26900' => 'aar', 'Aa31LG3G1820' => 'aar', 'Aa31LG5G1100' => 'aar', 'Aa31LG6G4740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2265' => 'aag', 'Actinidia07998' => 'ach', 'Actinidia11266' => 'ach', 'Actinidia12682' => 'ach', 'Actinidia26479' => 'ach', 'Actinidia31406' => 'ach', 'Actinidia32437' => 'ach', 'Actinidia38862' => 'ach', 'Ah.05g174230' => 'amhyb', 'Ah.05g179070' => 'amhyb', 'Ah.05g179090' => 'amhyb', 'Ah.12g059950' => 'amhyb', 'AL3G20480' => 'aly', 'AL4G44520' => 'aly', 'AL5G43110' => 'aly', 'AL6G13890' => 'aly', 'AL6G52620' => 'aly', 'AL7G30830' => 'aly', 'Aqoxy1G00899' => 'aox', 'Aqoxy5G04333' => 'aox', 'Aqoxy7G00641' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3IZ0NN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4EF6AW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W9P8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79GA3M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C43NQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFCU6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G95YVJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCHK29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LU1UG8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX91RN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGB4B1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8DA0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9H7JI' => 'arhy', 'AT3G09320' => 'ath', 'AT3G60800' => 'ath', 'AT4G00840' => 'ath', 'AT4G22750' => 'ath', 'AT5G04270' => 'ath', 'ATR0090G003' => 'atr', 'ATR0559G349' => 'atr', 'ATR0680G261' => 'atr', 'ATR0810G048' => 'atr', 'Atru.chr12.831' => 'acertr', 'Atru.chr5.303' => 'acertr', 'Atru.chr5.748' => 'acertr', 'Atru.chr8.1999' => 'acertr', 'Atru.chr9.1436' => 'acertr', 'AUR62004211' => 'cqu', 'AUR62004548' => 'cqu', 'AUR62013637' => 'cqu', 'AUR62022662' => 'cqu', 'AUR62025777' => 'cqu', 'AUR62042386' => 'cqu', 'BcaB01g02310' => 'bca', 'BcaB01g06062' => 'bca', 'BcaB02g08975' => 'bca', 'BcaB02g08980' => 'bca', 'BcaC01g04228' => 'bca', 'BcaC01g06830' => 'bca', 'BcaC02g10186' => 'bca', 'BcaC02g12214' => 'bca', 'BcaC04g24101' => 'bca', 'BcaC05g29520' => 'bca', 'BcaC05g29661' => 'bca', 'BcaC06g32130' => 'bca', 'BcaC06g32131' => 'bca', 'BcaC07g40601' => 'bca', 'BcaC07g42641' => 'bca', 'BcaNung01038' => 'bca', 'BcaNung01676' => 'bca', 'BcaNung02480' => 'bca', 'BcaNung07376' => 'bca', 'BolC3t16146H' => 'bol', 'BolC3t16637H' => 'bol', 'BolC4t22257H' => 'bol', 'BolC4t24728H' => 'bol', 'BolC5t34517H' => 'bol', 'BolC7t45703H' => 'bol', 'BolC8t51166H' => 'bol', 'BolC9t53038H' => 'bol', 'BolC9t60000H' => 'bol', 'BraA01t01345Z' => 'bra', 'BraA01t01346Z' => 'bra', 'BraA01t01348Z' => 'bra', 'BraA03t12347Z' => 'bra', 'BraA03t12775Z' => 'bra', 'BraA03t14439Z' => 'bra', 'BraA04t15860Z' => 'bra', 'BraA05t19511Z' => 'bra', 'BraA05t22746Z' => 'bra', 'BraA09t35767Z' => 'bra', 'BraA09t40732Z' => 'bra', 'BraA10t45233Z' => 'bra', 'C03p38720' => 'bna', 'C03p43680' => 'bna', 'C04p06350' => 'bna', 'C04p31800' => 'bna', 'C05p58680' => 'bna', 'C07p52110' => 'bna', 'C08p35760' => 'bna', 'C09p01050' => 'bna', 'C09p72600' => 'bna', 'CAN.G106.2' => 'can', 'CAN.G1482.1' => 'can', 'CAN.G324.12' => 'can', 'CAN.G388.20' => 'can', 'CAN.G412.7' => 'can', 'CAN.G694.32' => 'can', 'CAN.G92.12' => 'can', 'CANSAT11G2353' => 'cansat', 'CANSAT21G1398' => 'cansat', 'CANSAT56G2456' => 'cansat', 'CANSAT56G3031' => 'cansat', 'CANSAT56G4539' => 'cansat', 'CARHR083680' => 'chi', 'CARHR171190' => 'chi', 'CARHR209010' => 'chi', 'CARHR229680' => 'chi', 'CARHR249490' => 'chi', 'Carub.0003s0844' => 'cru', 'Carub.0005s2755' => 'cru', 'Carub.0006s0322' => 'cru', 'Carub.0006s3586' => 'cru', 'Carub.0007s1855' => 'cru', 'Ca_07808_v3' => 'car', 'Ca_09535_v3' => 'car', 'Ca_10548_v3' => 'car', 'Ca_19913_v3' => 'car', 'Ca_19916_v3' => 'car', 'Ca_19975_v3' => 'car', 'CBR_g22876' => 'cbr', 'CBR_g22879' => 'cbr', 'CBR_g38491' => 'cbr', 'CBR_g54185' => 'cbr', 'CBR_g54190' => 'cbr', 'Cc02_g11020' => 'ccan', 'Cc02_g23920' => 'ccan', 'Cc02_g39860' => 'ccan', 'Cc02_g39870' => 'ccan', 'Cc03_g06760' => 'ccan', 'Cc06_g02450' => 'ccan', 'Cc09_g09450' => 'ccan', 'CDE02G1959' => 'cde', 'CDE04G0600' => 'cde', 'CDE07G1996' => 'cde', 'CDE07G2078' => 'cde', 'CDE11G0611' => 'cde', 'Cfa001683' => 'cfa', 'Cfa001734' => 'cfa', 'Cfa001737' => 'cfa', 'Cfa003751' => 'cfa', 'Cfa012019' => 'cfa', 'Cfa017353' => 'cfa', 'Cfa017732' => 'cfa', 'Cfa022464' => 'cfa', 'Ciclev10012400m.g' => 'ccl', 'Ciclev10021242m.g' => 'ccl', 'Ciclev10021302m.g' => 'ccl', 'Ciclev10021463m.g' => 'ccl', 'Ciclev10032359m.g' => 'ccl', 'CiPaw.01G081000' => 'cil', 'CiPaw.01G262500' => 'cil', 'CiPaw.01G269800' => 'cil', 'CiPaw.02G168400' => 'cil', 'CiPaw.05G119500' => 'cil', 'CiPaw.11G147300' => 'cil', 'ClCG01G003630' => 'cla', 'ClCG05G000510' => 'cla', 'ClCG05G002300' => 'cla', 'ClCG08G007650' => 'cla', 'ClCG10G021250' => 'cla', 'COL.COLO4_06218' => 'col', 'COL.COLO4_12538' => 'col', 'COL.COLO4_14775' => 'col', 'COL.COLO4_23875' => 'col', 'Cpa.g.sc141.16' => 'cpa', 'Cpa.g.sc169.16' => 'cpa', 'Cpa.g.sc244.4' => 'cpa', 'Cpa.g.sc244.5' => 'cpa', 'Cpa.g.sc29.87' => 'cpa', 'Cpa.g.sc53.115' => 'cpa', 'Cre03.g207502' => 'cre', 'Cre06.g277000' => 'cre', 'Cre09.g394050' => 'cre', 'CsaV3_3G007680' => 'csa', 'CsaV3_3G009710' => 'csa', 'CsaV3_3G034790' => 'csa', 'CsaV3_5G003750' => 'csa', 'CsaV3_6G036620' => 'csa', 'CSS0002288' => 'camsi', 'CSS0011250' => 'camsi', 'CSS0021619' => 'camsi', 'CSS0046701' => 'camsi', 'DCAR_006420' => 'dca', 'DCAR_006865' => 'dca', 'DCAR_008558' => 'dca', 'DCAR_028754' => 'dca', 'DCAR_028755' => 'dca', 'Dinv31218' => 'din', 'Dinv32371' => 'din', 'Dinv34250' => 'din', 'Dinv37156' => 'din', 'Dinv43704' => 'din', 'Duzib093G1811' => 'dzi', 'Duzib106G1622' => 'dzi', 'Duzib114G0504' => 'dzi', 'Duzib128G0338' => 'dzi', 'Duzib128G1577' => 'dzi', 'Duzib133G0104' => 'dzi', 'Duzib133G1080' => 'dzi', 'Duzib138G0324' => 'dzi', 'Duzib138G0394' => 'dzi', 'Duzib205G0122' => 'dzi', 'Duzib268G1020' => 'dzi', 'Duzib268G1359' => 'dzi', 'ECA232G3929' => 'eca', 'ECA236G2210' => 'eca', 'ECA236G2287' => 'eca', 'ECA240G4568' => 'eca', 'ECA247G0894' => 'eca', 'EL10Ac1g00200' => 'bvu', 'EL10Ac1g00886' => 'bvu', 'EL10As1g23091' => 'bvu', 'EL10As1g23092' => 'bvu', 'Eucgr.A01284' => 'egr', 'Eucgr.A01285' => 'egr', 'Eucgr.D02456' => 'egr', 'Eucgr.E00018' => 'egr', 'Eucgr.E01439' => 'egr', 'Eucgr.G02859' => 'egr', 'FAN01G0168' => 'fan', 'FAN01G0453' => 'fan', 'FAN01G2761' => 'fan', 'FAN02G1239' => 'fan', 'FAN03G0645' => 'fan', 'FAN03G2707' => 'fan', 'FAN03G2978' => 'fan', 'FAN04G0227' => 'fan', 'FAN06G0091' => 'fan', 'FAN06G1418' => 'fan', 'FAN06G1512' => 'fan', 'FAN06G1986' => 'fan', 'FAN06G2905' => 'fan', 'FAN06G4325' => 'fan', 'FAN08G0033' => 'fan', 'FAN09G0642' => 'fan', 'FAN10G1763' => 'fan', 'FAN10G2026' => 'fan', 'FAN10G2513' => 'fan', 'FAN10G3402' => 'fan', 'FAN10G3564' => 'fan', 'FAN10G3987' => 'fan', 'FAN13G1490' => 'fan', 'FAN14G5857' => 'fan', 'FAN18G1188' => 'fan', 'FvH4_5g00750' => 'fve', 'FvH4_6g13410' => 'fve', 'FvH4_7g11740' => 'fve', 'FvH4_7g17410' => 'fve', 'FvH4_7g18860' => 'fve', 'Glyma.01G099100' => 'gma', 'Glyma.01G142300' => 'gma', 'Glyma.03G025500' => 'gma', 'Glyma.03G069700' => 'gma', 'Glyma.03G260000' => 'gma', 'Glyma.09G269800' => 'gma', 'Glyma.10G208700' => 'gma', 'Glyma.18G220400' => 'gma', 'Glyma.20G182000' => 'gma', 'Gohir.A01G221726' => 'ghi', 'Gohir.A07G134600' => 'ghi', 'Gohir.A07G146000' => 'ghi', 'Gohir.A08G173900' => 'ghi', 'Gohir.A09G194900' => 'ghi', 'Gohir.A10G204100' => 'ghi', 'Gohir.A11G080600' => 'ghi', 'Gohir.A11G327500' => 'ghi', 'Gohir.A12G101800' => 'ghi', 'Gohir.D01G211200' => 'ghi', 'Gohir.D07G139200' => 'ghi', 'Gohir.D07G152100' => 'ghi', 'Gohir.D08G192600' => 'ghi', 'Gohir.D09G189200' => 'ghi', 'Gohir.D10G212000' => 'ghi', 'Gohir.D11G085200' => 'ghi', 'Gohir.D11G346400' => 'ghi', 'Gohir.D12G104800' => 'ghi', 'Gorai.001G151300' => 'gra', 'Gorai.001G174100' => 'gra', 'Gorai.002G257000' => 'gra', 'Gorai.004G202600' => 'gra', 'Gorai.007G090900' => 'gra', 'Gorai.007G376700' => 'gra', 'Gorai.008G114100' => 'gra', 'Gorai.011G237900' => 'gra', 'GSVIVG01005450001' => 'vvi', 'GSVIVG01016232001' => 'vvi', 'GSVIVG01026157001' => 'vvi', 'GSVIVG01027419001' => 'vvi', 'GSVIVG01027631001' => 'vvi', 'GSVIVG01034143001' => 'vvi', 'HanXRQChr03g0093921' => 'han', 'HanXRQChr04g0120001' => 'han', 'HanXRQChr04g0122561' => 'han', 'HanXRQChr09g0246851' => 'han', 'HanXRQChr10g0293311' => 'han', 'HanXRQChr13g0425231' => 'han', 'HanXRQChr16g0532571' => 'han', 'Haze_09050' => 'cav', 'Haze_15715' => 'cav', 'Haze_15716' => 'cav', 'Haze_16803' => 'cav', 'Haze_16850' => 'cav', 'Hma1.2p1_0301F.1_g118655' => 'hma', 'Hma1.2p1_0309F.1_g120590' => 'hma', 'Hma1.2p1_0936F.1_g238900' => 'hma', 'Hma1.2p1_3552F.1_g336740' => 'hma', 'HPP92_003520' => 'vpl', 'HPP92_006628' => 'vpl', 'HPP92_006645' => 'vpl', 'HPP92_014669' => 'vpl', 'HPP92_015077' => 'vpl', 'Hund16742' => 'sun', 'Hund17022' => 'sun', 'Lalb_Chr02g0152131' => 'lal', 'Lalb_Chr05g0225371' => 'lal', 'Lalb_Chr07g0189841' => 'lal', 'Lalb_Chr07g0192961' => 'lal', 'Lalb_Chr12g0208221' => 'lal', 'Lalb_Chr13g0291211' => 'lal', 'Lalb_Chr13g0291781' => 'lal', 'Lalb_Chr18g0044651' => 'lal', 'Lalb_Chr21g0313731' => 'lal', 'Lj1g0022533' => 'lja', 'Lj2A18T50' => 'lonja', 'Lj2A92G93' => 'lonja', 'Lj3A965T73' => 'lonja', 'Lj3g0000673' => 'lja', 'Lj3g0002666' => 'lja', 'Lj4g0016985' => 'lja', 'Lj5g0003625' => 'lja', 'Lj7A529G36' => 'lonja', 'Lj9A569T49' => 'lonja', 'Lj9A604T63' => 'lonja', 'Lsat_1_v5_gn_3_132060' => 'lsa', 'Lsat_1_v5_gn_4_68941' => 'lsa', 'Lsat_1_v5_gn_5_95580' => 'lsa', 'Lsat_1_v5_gn_7_161' => 'lsa', 'Lsat_1_v5_gn_7_7041' => 'lsa', 'Lsat_1_v5_gn_9_33481' => 'lsa', 'Lsat_1_v5_gn_9_68260' => 'lsa', 'Manes.01G073100' => 'mes', 'Manes.01G266300' => 'mes', 'Manes.02G033300' => 'mes', 'Manes.05G017900' => 'mes', 'Manes.05G046100' => 'mes', 'Manes.08G080900' => 'mes', 'Manes.10G049400' => 'mes', 'Mapoly0009s0186' => 'mpo', 'Mapoly0036s0118' => 'mpo', 'Mapoly0101s0046' => 'mpo', 'MBI04_g30218_MAGBIO' => 'mbi', 'MBI04_g35564_MAGBIO' => 'mbi', 'MBI12_g34011_MAGBIO' => 'mbi', 'MBI14_g04655_MAGBIO' => 'mbi', 'MCO07G653' => 'mco', 'MCO10G173' => 'mco', 'MD01G1087100' => 'mdo', 'MD01G1104200' => 'mdo', 'MD02G1205100' => 'mdo', 'MD04G1079200' => 'mdo', 'MD04G1131400' => 'mdo', 'MD07G1121600' => 'mdo', 'MD07G1157300' => 'mdo', 'MD07G1171000' => 'mdo', 'MD12G1144500' => 'mdo', 'Medtr1g094610' => 'mtr', 'Medtr4g021795' => 'mtr', 'Medtr4g023760' => 'mtr', 'Medtr7g118050' => 'mtr', 'MELO3C005582.2' => 'cme', 'MELO3C005989.2' => 'cme', 'MELO3C006192.2' => 'cme', 'MELO3C009248.2' => 'cme', 'MELO3C019817.2' => 'cme', 'Migut.B01625' => 'egut', 'Migut.B01915' => 'egut', 'Migut.F01721' => 'egut', 'Migut.J00314' => 'egut', 'MSTRG.20742' => 'ama', 'MSTRG.8134' => 'ama', 'Nitab4.5_0000096g0010' => 'nta', 'Nitab4.5_0000202g0030' => 'nta', 'Nitab4.5_0000216g0370' => 'nta', 'Nitab4.5_0000457g0230' => 'nta', 'Nitab4.5_0001702g0170' => 'nta', 'Nitab4.5_0003607g0010' => 'nta', 'Nitab4.5_0004917g0020' => 'nta', 'Nitab4.5_0007059g0010' => 'nta', 'Nitab4.5_0007184g0010' => 'nta', 'Nitab4.5_0007346g0020' => 'nta', 'Nn1g00410' => 'nnu', 'Nn1g01252' => 'nnu', 'Nn2g11168' => 'nnu', 'Nn2g13403' => 'nnu', 'Nn2g13760' => 'nnu', 'Nn4g26380' => 'nnu', 'Oeu000806.2' => 'oeu', 'Oeu005788.1' => 'oeu', 'Oeu006900.3' => 'oeu', 'Oeu007797.1' => 'oeu', 'Oeu011932.1' => 'oeu', 'Oeu022739.1' => 'oeu', 'Oeu037918.1' => 'oeu', 'Oeu055490.2' => 'oeu', 'Os01g0844400' => 'osa', 'Os02g0819100' => 'osa', 'Os03g0804300' => 'osa', 'Os05g0458000' => 'osa', 'Os07g0467800' => 'osa', 'Os12g0602200' => 'osa', 'Peaxi162Scf00013g03444' => 'pax', 'Peaxi162Scf00094g01120' => 'pax', 'Peaxi162Scf00191g01211' => 'pax', 'Peaxi162Scf00238g01110' => 'pax', 'Peaxi162Scf00330g00719' => 'pax', 'Peaxi162Scf00627g00018' => 'pax', 'PGR031G2686' => 'pgr', 'PGR042G0809' => 'pgr', 'PGR142G0193' => 'pgr', 'PGSC0003DMG400011066' => 'stu', 'PGSC0003DMG400012041' => 'stu', 'PGSC0003DMG400013678' => 'stu', 'PGSC0003DMG400023477' => 'stu', 'PGSC0003DMG400025956' => 'stu', 'PGSC0003DMG401019151' => 'stu', 'Phvul.006G116400' => 'pvu', 'Phvul.007G097300' => 'pvu', 'Phvul.010G015000' => 'pvu', 'Phvul.010G083900' => 'pvu', 'Potri.001G117100' => 'ptr', 'Potri.002G147300' => 'ptr', 'Potri.003G115600' => 'ptr', 'Potri.006G087400' => 'ptr', 'Potri.010G226100' => 'ptr', 'Potri.014G069200' => 'ptr', 'Potri.014G104000' => 'ptr', 'Potri.016G100200' => 'ptr', 'Pp3c10_20450' => 'ppa', 'Pp3c1_42400' => 'ppa', 'Pp3c3_24390' => 'ppa', 'Pp3c3_2860' => 'ppa', 'PRCOL_00003193' => 'pco', 'Prupe.2G144500' => 'ppe', 'Prupe.2G195700' => 'ppe', 'Prupe.2G209800' => 'ppe', 'Prupe.5G080000' => 'ppe', 'Prupe.6G257900' => 'ppe', 'Psat3g001160' => 'psa', 'Psat6g181880' => 'psa', 'Psat7g233720' => 'psa', 'PSO063G7587' => 'pso', 'PSO339G2145' => 'pso', 'PSO339G3369' => 'pso', 'PSO478G2747' => 'pso', 'PSO513G0140' => 'pso', 'PSO782G1614' => 'pso', 'PSO782G4889' => 'pso', 'PSO782G5485' => 'pso', 'PSO801G0241' => 'pso', 'QL07p048854' => 'qlo', 'QL08p046745' => 'qlo', 'QL08p052606' => 'qlo', 'QL08p053414' => 'qlo', 'QL08p054868' => 'qlo', 'RcHm_v2.0_Chr1g0350251' => 'rch', 'RcHm_v2.0_Chr1g0360851' => 'rch', 'RcHm_v2.0_Chr1g0362791' => 'rch', 'RcHm_v2.0_Chr3g0466281' => 'rch', 'RcHm_v2.0_Chr7g0201481' => 'rch', 'Rhsim01G0148600' => 'rsi', 'Rhsim05G0194400' => 'rsi', 'Rhsim07G0000700' => 'rsi', 'Rhsim07G0000800' => 'rsi', 'Rhsim07G0027900' => 'rsi', 'Rhsim09G0149500' => 'rsi', 'RhsimUnG0186900' => 'rsi', 'Sabra01G0089900' => 'sbr', 'Sabra02G0114700' => 'sbr', 'Sabra02G0116300' => 'sbr', 'Sabra03G0080100' => 'sbr', 'Sabra08G0024300' => 'sbr', 'Sabra10G0174300' => 'sbr', 'Sabra14G0048900' => 'sbr', 'Sabra14G0076500' => 'sbr', 'SalBow5G2513' => 'sbo', 'Sc01g0002300' => 'sci', 'Sc01g0004450' => 'sci', 'Sc06g0001680' => 'sci', 'Sc23g0003580' => 'sci', 'Sed0000913' => 'sed', 'Sed0001655' => 'sed', 'Sed0007745' => 'sed', 'Sed0010951' => 'sed', 'Sed0017599' => 'sed', 'Sed0021405' => 'sed', 'Sed0022810' => 'sed', 'SEGI_07099' => 'sgi', 'SEGI_11931' => 'sgi', 'SEGI_13187' => 'sgi', 'SEGI_29958' => 'sgi', 'SEGI_36351' => 'sgi', 'SGA_v2.0_scaffold126G33770' => 'sas', 'SGA_v2.0_scaffold153G37003' => 'sas', 'SGA_v2.0_scaffold2G01359' => 'sas', 'SGA_v2.0_scaffold5G03064' => 'sas', 'SGA_v2.0_scaffold95G28903' => 'sas', 'SHI12701' => 'shi', 'SHI26410' => 'shi', 'SHI38997' => 'shi', 'SHI53759' => 'shi', 'SHI53886' => 'shi', 'SHI54714' => 'shi', 'SMO011G0041' => 'smo', 'SMO146G0251' => 'smo', 'SMO160G0004' => 'smo', 'SMO174G0057' => 'smo', 'SMO244G0089' => 'smo', 'SMO296G0011' => 'smo', 'Solyc01g091280.3' => 'sly', 'Solyc05g047610.3' => 'sly', 'Solyc05g047640.3' => 'sly', 'Solyc05g055630.3' => 'sly', 'Solyc10g018160.2' => 'sly', 'Solyc10g084820.2' => 'sly', 'Solyc10g086565.2' => 'sly', 'Sopen01g037030' => 'spe', 'Sopen05g027920' => 'spe', 'Sopen05g034070' => 'spe', 'Sopen10g007260' => 'spe', 'Sopen10g034260' => 'spe', 'Sopen10g035950' => 'spe', 'Sp3g07710' => 'spa', 'Sp4g27420' => 'spa', 'Sp5g02450' => 'spa', 'Sp6g01280' => 'spa', 'Sp6g38480' => 'spa', 'Sp7g20780' => 'spa', 'TAR374G1413' => 'tar', 'TAR623G1777' => 'tar', 'TAR629G2370' => 'tar', 'TAR633G1759' => 'tar', 'TAR636G3387' => 'tar', 'THA.LOC104802447' => 'tha', 'THA.LOC104813916' => 'tha', 'THA.LOC104816423' => 'tha', 'THA.LOC104817246' => 'tha', 'THA.LOC104825895' => 'tha', 'Thecc.01G335200' => 'tca', 'Thecc.01G377400' => 'tca', 'Thecc.03G262200' => 'tca', 'Thecc.05G036800' => 'tca', 'Thecc.10G080500' => 'tca', 'Thecc.10G080800' => 'tca', 'Thhalv10001560m.g' => 'esa', 'Thhalv10006120m.g' => 'esa', 'Thhalv10014375m.g' => 'esa', 'Thhalv10021264m.g' => 'esa', 'Thhalv10028856m.g' => 'esa', 'TPR.G1914' => 'tpr', 'TPR.G4757' => 'tpr', 'TPR.G5595' => 'tpr', 'TWI14G0952' => 'twi', 'TWI14G1307' => 'twi', 'TWI38G2143' => 'twi', 'TWI59G0826' => 'twi', 'TWI77G0527' => 'twi', 'TWI81G0150' => 'twi', 'unitig_21.g21018' => 'ugi', 'unitig_26.g9725' => 'ugi', 'unitig_744.g24653' => 'ugi', 'unitig_749.g13778' => 'ugi', 'unitig_899.g15035' => 'ugi', 'vmacro04296' => 'vma', 'vmacro04852' => 'vma', 'vmacro13404' => 'vma', 'vmacro20169' => 'vma', 'vmacro21014' => 'vma', 'VMungo0331G0237' => 'vmu', 'VMungo0331G0706' => 'vmu', 'VMungo0331G1361' => 'vmu', 'VMungo0331G1489' => 'vmu', 'VMungo0540G1037' => 'vmu', 'VMungo0720G2487' => 'vmu', 'VMungo0720G2721' => 'vmu', 'Zm00001eb086860' => 'zma', 'Zm00001eb104760' => 'zma', 'Zm00001eb148220' => 'zma', 'Zm00001eb259030' => 'zma', 'Zm00001eb289590' => 'zma', 'Zm00001eb420150' => 'zma' ) $gf_id = 'HOM05D000968' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000968' ) $data_identifier = 'HOM05D000968' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 19, 'bol' => (int) 9, 'bra' => (int) 12, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 5, 'ccan' => (int) 7, 'cde' => (int) 5, 'cfa' => (int) 8, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 4, 'dca' => (int) 5, 'din' => (int) 5, 'dzi' => (int) 12, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 25, 'fve' => (int) 5, 'gma' => (int) 9, 'ghi' => (int) 18, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 7, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 5, 'sun' => (int) 2, 'lal' => (int) 9, 'lja' => (int) 5, 'lonja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 9, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 2, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 3, 'stu' => (int) 6, 'pvu' => (int) 4, 'ptr' => (int) 8, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 3, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 1, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 5, 'sas' => (int) 5, 'shi' => (int) 6, 'smo' => (int) 6, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 3, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420150' $species_info = array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ) $local_species = 'car' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000968', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p31690' => 'bna', 'A03p36040' => 'bna', 'A03p53730' => 'bna', 'A04p01410' => 'bna', 'A05p05420' => 'bna', 'A05p39630' => 'bna', 'A05p39640' => 'bna', 'A09p00970' => 'bna', 'A09p53060' => 'bna', 'A10p31890' => 'bna', 'Aa31LG10G15040' => 'aar', 'Aa31LG1G21090' => 'aar', 'Aa31LG1G26900' => 'aar', 'Aa31LG3G1820' => 'aar', 'Aa31LG5G1100' => 'aar', 'Aa31LG6G4740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2265' => 'aag', 'Actinidia07998' => 'ach', 'Actinidia11266' => 'ach', 'Actinidia12682' => 'ach', 'Actinidia26479' => 'ach', 'Actinidia31406' => 'ach', 'Actinidia32437' => 'ach', 'Actinidia38862' => 'ach', 'Ah.05g174230' => 'amhyb', 'Ah.05g179070' => 'amhyb', 'Ah.05g179090' => 'amhyb', 'Ah.12g059950' => 'amhyb', 'AL3G20480' => 'aly', 'AL4G44520' => 'aly', 'AL5G43110' => 'aly', 'AL6G13890' => 'aly', 'AL6G52620' => 'aly', 'AL7G30830' => 'aly', 'Aqoxy1G00899' => 'aox', 'Aqoxy5G04333' => 'aox', 'Aqoxy7G00641' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3IZ0NN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4EF6AW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W9P8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79GA3M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C43NQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFCU6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G95YVJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCHK29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LU1UG8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX91RN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGB4B1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8DA0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9H7JI' => 'arhy', 'AT3G09320' => 'ath', 'AT3G60800' => 'ath', 'AT4G00840' => 'ath', 'AT4G22750' => 'ath', 'AT5G04270' => 'ath', 'ATR0090G003' => 'atr', 'ATR0559G349' => 'atr', 'ATR0680G261' => 'atr', 'ATR0810G048' => 'atr', 'Atru.chr12.831' => 'acertr', 'Atru.chr5.303' => 'acertr', 'Atru.chr5.748' => 'acertr', 'Atru.chr8.1999' => 'acertr', 'Atru.chr9.1436' => 'acertr', 'AUR62004211' => 'cqu', 'AUR62004548' => 'cqu', 'AUR62013637' => 'cqu', 'AUR62022662' => 'cqu', 'AUR62025777' => 'cqu', 'AUR62042386' => 'cqu', 'BcaB01g02310' => 'bca', 'BcaB01g06062' => 'bca', 'BcaB02g08975' => 'bca', 'BcaB02g08980' => 'bca', 'BcaC01g04228' => 'bca', 'BcaC01g06830' => 'bca', 'BcaC02g10186' => 'bca', 'BcaC02g12214' => 'bca', 'BcaC04g24101' => 'bca', 'BcaC05g29520' => 'bca', 'BcaC05g29661' => 'bca', 'BcaC06g32130' => 'bca', 'BcaC06g32131' => 'bca', 'BcaC07g40601' => 'bca', 'BcaC07g42641' => 'bca', 'BcaNung01038' => 'bca', 'BcaNung01676' => 'bca', 'BcaNung02480' => 'bca', 'BcaNung07376' => 'bca', 'BolC3t16146H' => 'bol', 'BolC3t16637H' => 'bol', 'BolC4t22257H' => 'bol', 'BolC4t24728H' => 'bol', 'BolC5t34517H' => 'bol', 'BolC7t45703H' => 'bol', 'BolC8t51166H' => 'bol', 'BolC9t53038H' => 'bol', 'BolC9t60000H' => 'bol', 'BraA01t01345Z' => 'bra', 'BraA01t01346Z' => 'bra', 'BraA01t01348Z' => 'bra', 'BraA03t12347Z' => 'bra', 'BraA03t12775Z' => 'bra', 'BraA03t14439Z' => 'bra', 'BraA04t15860Z' => 'bra', 'BraA05t19511Z' => 'bra', 'BraA05t22746Z' => 'bra', 'BraA09t35767Z' => 'bra', 'BraA09t40732Z' => 'bra', 'BraA10t45233Z' => 'bra', 'C03p38720' => 'bna', 'C03p43680' => 'bna', 'C04p06350' => 'bna', 'C04p31800' => 'bna', 'C05p58680' => 'bna', 'C07p52110' => 'bna', 'C08p35760' => 'bna', 'C09p01050' => 'bna', 'C09p72600' => 'bna', 'CAN.G106.2' => 'can', 'CAN.G1482.1' => 'can', 'CAN.G324.12' => 'can', 'CAN.G388.20' => 'can', 'CAN.G412.7' => 'can', 'CAN.G694.32' => 'can', 'CAN.G92.12' => 'can', 'CANSAT11G2353' => 'cansat', 'CANSAT21G1398' => 'cansat', 'CANSAT56G2456' => 'cansat', 'CANSAT56G3031' => 'cansat', 'CANSAT56G4539' => 'cansat', 'CARHR083680' => 'chi', 'CARHR171190' => 'chi', 'CARHR209010' => 'chi', 'CARHR229680' => 'chi', 'CARHR249490' => 'chi', 'Carub.0003s0844' => 'cru', 'Carub.0005s2755' => 'cru', 'Carub.0006s0322' => 'cru', 'Carub.0006s3586' => 'cru', 'Carub.0007s1855' => 'cru', 'Ca_07808_v3' => 'car', 'Ca_09535_v3' => 'car', 'Ca_10548_v3' => 'car', 'Ca_19913_v3' => 'car', 'Ca_19916_v3' => 'car', 'Ca_19975_v3' => 'car', 'CBR_g22876' => 'cbr', 'CBR_g22879' => 'cbr', 'CBR_g38491' => 'cbr', 'CBR_g54185' => 'cbr', 'CBR_g54190' => 'cbr', 'Cc02_g11020' => 'ccan', 'Cc02_g23920' => 'ccan', 'Cc02_g39860' => 'ccan', 'Cc02_g39870' => 'ccan', 'Cc03_g06760' => 'ccan', 'Cc06_g02450' => 'ccan', 'Cc09_g09450' => 'ccan', 'CDE02G1959' => 'cde', 'CDE04G0600' => 'cde', 'CDE07G1996' => 'cde', 'CDE07G2078' => 'cde', 'CDE11G0611' => 'cde', 'Cfa001683' => 'cfa', 'Cfa001734' => 'cfa', 'Cfa001737' => 'cfa', 'Cfa003751' => 'cfa', 'Cfa012019' => 'cfa', 'Cfa017353' => 'cfa', 'Cfa017732' => 'cfa', 'Cfa022464' => 'cfa', 'Ciclev10012400m.g' => 'ccl', 'Ciclev10021242m.g' => 'ccl', 'Ciclev10021302m.g' => 'ccl', 'Ciclev10021463m.g' => 'ccl', 'Ciclev10032359m.g' => 'ccl', 'CiPaw.01G081000' => 'cil', 'CiPaw.01G262500' => 'cil', 'CiPaw.01G269800' => 'cil', 'CiPaw.02G168400' => 'cil', 'CiPaw.05G119500' => 'cil', 'CiPaw.11G147300' => 'cil', 'ClCG01G003630' => 'cla', 'ClCG05G000510' => 'cla', 'ClCG05G002300' => 'cla', 'ClCG08G007650' => 'cla', 'ClCG10G021250' => 'cla', 'COL.COLO4_06218' => 'col', 'COL.COLO4_12538' => 'col', 'COL.COLO4_14775' => 'col', 'COL.COLO4_23875' => 'col', 'Cpa.g.sc141.16' => 'cpa', 'Cpa.g.sc169.16' => 'cpa', 'Cpa.g.sc244.4' => 'cpa', 'Cpa.g.sc244.5' => 'cpa', 'Cpa.g.sc29.87' => 'cpa', 'Cpa.g.sc53.115' => 'cpa', 'Cre03.g207502' => 'cre', 'Cre06.g277000' => 'cre', 'Cre09.g394050' => 'cre', 'CsaV3_3G007680' => 'csa', 'CsaV3_3G009710' => 'csa', 'CsaV3_3G034790' => 'csa', 'CsaV3_5G003750' => 'csa', 'CsaV3_6G036620' => 'csa', 'CSS0002288' => 'camsi', 'CSS0011250' => 'camsi', 'CSS0021619' => 'camsi', 'CSS0046701' => 'camsi', 'DCAR_006420' => 'dca', 'DCAR_006865' => 'dca', 'DCAR_008558' => 'dca', 'DCAR_028754' => 'dca', 'DCAR_028755' => 'dca', 'Dinv31218' => 'din', 'Dinv32371' => 'din', 'Dinv34250' => 'din', 'Dinv37156' => 'din', 'Dinv43704' => 'din', 'Duzib093G1811' => 'dzi', 'Duzib106G1622' => 'dzi', 'Duzib114G0504' => 'dzi', 'Duzib128G0338' => 'dzi', 'Duzib128G1577' => 'dzi', 'Duzib133G0104' => 'dzi', 'Duzib133G1080' => 'dzi', 'Duzib138G0324' => 'dzi', 'Duzib138G0394' => 'dzi', 'Duzib205G0122' => 'dzi', 'Duzib268G1020' => 'dzi', 'Duzib268G1359' => 'dzi', 'ECA232G3929' => 'eca', 'ECA236G2210' => 'eca', 'ECA236G2287' => 'eca', 'ECA240G4568' => 'eca', 'ECA247G0894' => 'eca', 'EL10Ac1g00200' => 'bvu', 'EL10Ac1g00886' => 'bvu', 'EL10As1g23091' => 'bvu', 'EL10As1g23092' => 'bvu', 'Eucgr.A01284' => 'egr', 'Eucgr.A01285' => 'egr', 'Eucgr.D02456' => 'egr', 'Eucgr.E00018' => 'egr', 'Eucgr.E01439' => 'egr', 'Eucgr.G02859' => 'egr', 'FAN01G0168' => 'fan', 'FAN01G0453' => 'fan', 'FAN01G2761' => 'fan', 'FAN02G1239' => 'fan', 'FAN03G0645' => 'fan', 'FAN03G2707' => 'fan', 'FAN03G2978' => 'fan', 'FAN04G0227' => 'fan', 'FAN06G0091' => 'fan', 'FAN06G1418' => 'fan', 'FAN06G1512' => 'fan', 'FAN06G1986' => 'fan', 'FAN06G2905' => 'fan', 'FAN06G4325' => 'fan', 'FAN08G0033' => 'fan', 'FAN09G0642' => 'fan', 'FAN10G1763' => 'fan', 'FAN10G2026' => 'fan', 'FAN10G2513' => 'fan', 'FAN10G3402' => 'fan', 'FAN10G3564' => 'fan', 'FAN10G3987' => 'fan', 'FAN13G1490' => 'fan', 'FAN14G5857' => 'fan', 'FAN18G1188' => 'fan', 'FvH4_5g00750' => 'fve', 'FvH4_6g13410' => 'fve', 'FvH4_7g11740' => 'fve', 'FvH4_7g17410' => 'fve', 'FvH4_7g18860' => 'fve', 'Glyma.01G099100' => 'gma', 'Glyma.01G142300' => 'gma', 'Glyma.03G025500' => 'gma', 'Glyma.03G069700' => 'gma', 'Glyma.03G260000' => 'gma', 'Glyma.09G269800' => 'gma', 'Glyma.10G208700' => 'gma', 'Glyma.18G220400' => 'gma', 'Glyma.20G182000' => 'gma', 'Gohir.A01G221726' => 'ghi', 'Gohir.A07G134600' => 'ghi', 'Gohir.A07G146000' => 'ghi', 'Gohir.A08G173900' => 'ghi', 'Gohir.A09G194900' => 'ghi', 'Gohir.A10G204100' => 'ghi', 'Gohir.A11G080600' => 'ghi', 'Gohir.A11G327500' => 'ghi', 'Gohir.A12G101800' => 'ghi', 'Gohir.D01G211200' => 'ghi', 'Gohir.D07G139200' => 'ghi', 'Gohir.D07G152100' => 'ghi', 'Gohir.D08G192600' => 'ghi', 'Gohir.D09G189200' => 'ghi', 'Gohir.D10G212000' => 'ghi', 'Gohir.D11G085200' => 'ghi', 'Gohir.D11G346400' => 'ghi', 'Gohir.D12G104800' => 'ghi', 'Gorai.001G151300' => 'gra', 'Gorai.001G174100' => 'gra', 'Gorai.002G257000' => 'gra', 'Gorai.004G202600' => 'gra', 'Gorai.007G090900' => 'gra', 'Gorai.007G376700' => 'gra', 'Gorai.008G114100' => 'gra', 'Gorai.011G237900' => 'gra', 'GSVIVG01005450001' => 'vvi', 'GSVIVG01016232001' => 'vvi', 'GSVIVG01026157001' => 'vvi', 'GSVIVG01027419001' => 'vvi', 'GSVIVG01027631001' => 'vvi', 'GSVIVG01034143001' => 'vvi', 'HanXRQChr03g0093921' => 'han', 'HanXRQChr04g0120001' => 'han', 'HanXRQChr04g0122561' => 'han', 'HanXRQChr09g0246851' => 'han', 'HanXRQChr10g0293311' => 'han', 'HanXRQChr13g0425231' => 'han', 'HanXRQChr16g0532571' => 'han', 'Haze_09050' => 'cav', 'Haze_15715' => 'cav', 'Haze_15716' => 'cav', 'Haze_16803' => 'cav', 'Haze_16850' => 'cav', 'Hma1.2p1_0301F.1_g118655' => 'hma', 'Hma1.2p1_0309F.1_g120590' => 'hma', 'Hma1.2p1_0936F.1_g238900' => 'hma', 'Hma1.2p1_3552F.1_g336740' => 'hma', 'HPP92_003520' => 'vpl', 'HPP92_006628' => 'vpl', 'HPP92_006645' => 'vpl', 'HPP92_014669' => 'vpl', 'HPP92_015077' => 'vpl', 'Hund16742' => 'sun', 'Hund17022' => 'sun', 'Lalb_Chr02g0152131' => 'lal', 'Lalb_Chr05g0225371' => 'lal', 'Lalb_Chr07g0189841' => 'lal', 'Lalb_Chr07g0192961' => 'lal', 'Lalb_Chr12g0208221' => 'lal', 'Lalb_Chr13g0291211' => 'lal', 'Lalb_Chr13g0291781' => 'lal', 'Lalb_Chr18g0044651' => 'lal', 'Lalb_Chr21g0313731' => 'lal', 'Lj1g0022533' => 'lja', 'Lj2A18T50' => 'lonja', 'Lj2A92G93' => 'lonja', 'Lj3A965T73' => 'lonja', 'Lj3g0000673' => 'lja', 'Lj3g0002666' => 'lja', 'Lj4g0016985' => 'lja', 'Lj5g0003625' => 'lja', 'Lj7A529G36' => 'lonja', 'Lj9A569T49' => 'lonja', 'Lj9A604T63' => 'lonja', 'Lsat_1_v5_gn_3_132060' => 'lsa', 'Lsat_1_v5_gn_4_68941' => 'lsa', 'Lsat_1_v5_gn_5_95580' => 'lsa', 'Lsat_1_v5_gn_7_161' => 'lsa', 'Lsat_1_v5_gn_7_7041' => 'lsa', 'Lsat_1_v5_gn_9_33481' => 'lsa', 'Lsat_1_v5_gn_9_68260' => 'lsa', 'Manes.01G073100' => 'mes', 'Manes.01G266300' => 'mes', 'Manes.02G033300' => 'mes', 'Manes.05G017900' => 'mes', 'Manes.05G046100' => 'mes', 'Manes.08G080900' => 'mes', 'Manes.10G049400' => 'mes', 'Mapoly0009s0186' => 'mpo', 'Mapoly0036s0118' => 'mpo', 'Mapoly0101s0046' => 'mpo', 'MBI04_g30218_MAGBIO' => 'mbi', 'MBI04_g35564_MAGBIO' => 'mbi', 'MBI12_g34011_MAGBIO' => 'mbi', 'MBI14_g04655_MAGBIO' => 'mbi', 'MCO07G653' => 'mco', 'MCO10G173' => 'mco', 'MD01G1087100' => 'mdo', 'MD01G1104200' => 'mdo', 'MD02G1205100' => 'mdo', 'MD04G1079200' => 'mdo', 'MD04G1131400' => 'mdo', 'MD07G1121600' => 'mdo', 'MD07G1157300' => 'mdo', 'MD07G1171000' => 'mdo', 'MD12G1144500' => 'mdo', 'Medtr1g094610' => 'mtr', 'Medtr4g021795' => 'mtr', 'Medtr4g023760' => 'mtr', 'Medtr7g118050' => 'mtr', 'MELO3C005582.2' => 'cme', 'MELO3C005989.2' => 'cme', 'MELO3C006192.2' => 'cme', 'MELO3C009248.2' => 'cme', 'MELO3C019817.2' => 'cme', 'Migut.B01625' => 'egut', 'Migut.B01915' => 'egut', 'Migut.F01721' => 'egut', 'Migut.J00314' => 'egut', 'MSTRG.20742' => 'ama', 'MSTRG.8134' => 'ama', 'Nitab4.5_0000096g0010' => 'nta', 'Nitab4.5_0000202g0030' => 'nta', 'Nitab4.5_0000216g0370' => 'nta', 'Nitab4.5_0000457g0230' => 'nta', 'Nitab4.5_0001702g0170' => 'nta', 'Nitab4.5_0003607g0010' => 'nta', 'Nitab4.5_0004917g0020' => 'nta', 'Nitab4.5_0007059g0010' => 'nta', 'Nitab4.5_0007184g0010' => 'nta', 'Nitab4.5_0007346g0020' => 'nta', 'Nn1g00410' => 'nnu', 'Nn1g01252' => 'nnu', 'Nn2g11168' => 'nnu', 'Nn2g13403' => 'nnu', 'Nn2g13760' => 'nnu', 'Nn4g26380' => 'nnu', 'Oeu000806.2' => 'oeu', 'Oeu005788.1' => 'oeu', 'Oeu006900.3' => 'oeu', 'Oeu007797.1' => 'oeu', 'Oeu011932.1' => 'oeu', 'Oeu022739.1' => 'oeu', 'Oeu037918.1' => 'oeu', 'Oeu055490.2' => 'oeu', 'Os01g0844400' => 'osa', 'Os02g0819100' => 'osa', 'Os03g0804300' => 'osa', 'Os05g0458000' => 'osa', 'Os07g0467800' => 'osa', 'Os12g0602200' => 'osa', 'Peaxi162Scf00013g03444' => 'pax', 'Peaxi162Scf00094g01120' => 'pax', 'Peaxi162Scf00191g01211' => 'pax', 'Peaxi162Scf00238g01110' => 'pax', 'Peaxi162Scf00330g00719' => 'pax', 'Peaxi162Scf00627g00018' => 'pax', 'PGR031G2686' => 'pgr', 'PGR042G0809' => 'pgr', 'PGR142G0193' => 'pgr', 'PGSC0003DMG400011066' => 'stu', 'PGSC0003DMG400012041' => 'stu', 'PGSC0003DMG400013678' => 'stu', 'PGSC0003DMG400023477' => 'stu', 'PGSC0003DMG400025956' => 'stu', 'PGSC0003DMG401019151' => 'stu', 'Phvul.006G116400' => 'pvu', 'Phvul.007G097300' => 'pvu', 'Phvul.010G015000' => 'pvu', 'Phvul.010G083900' => 'pvu', 'Potri.001G117100' => 'ptr', 'Potri.002G147300' => 'ptr', 'Potri.003G115600' => 'ptr', 'Potri.006G087400' => 'ptr', 'Potri.010G226100' => 'ptr', 'Potri.014G069200' => 'ptr', 'Potri.014G104000' => 'ptr', 'Potri.016G100200' => 'ptr', 'Pp3c10_20450' => 'ppa', 'Pp3c1_42400' => 'ppa', 'Pp3c3_24390' => 'ppa', 'Pp3c3_2860' => 'ppa', 'PRCOL_00003193' => 'pco', 'Prupe.2G144500' => 'ppe', 'Prupe.2G195700' => 'ppe', 'Prupe.2G209800' => 'ppe', 'Prupe.5G080000' => 'ppe', 'Prupe.6G257900' => 'ppe', 'Psat3g001160' => 'psa', 'Psat6g181880' => 'psa', 'Psat7g233720' => 'psa', 'PSO063G7587' => 'pso', 'PSO339G2145' => 'pso', 'PSO339G3369' => 'pso', 'PSO478G2747' => 'pso', 'PSO513G0140' => 'pso', 'PSO782G1614' => 'pso', 'PSO782G4889' => 'pso', 'PSO782G5485' => 'pso', 'PSO801G0241' => 'pso', 'QL07p048854' => 'qlo', 'QL08p046745' => 'qlo', 'QL08p052606' => 'qlo', 'QL08p053414' => 'qlo', 'QL08p054868' => 'qlo', 'RcHm_v2.0_Chr1g0350251' => 'rch', 'RcHm_v2.0_Chr1g0360851' => 'rch', 'RcHm_v2.0_Chr1g0362791' => 'rch', 'RcHm_v2.0_Chr3g0466281' => 'rch', 'RcHm_v2.0_Chr7g0201481' => 'rch', 'Rhsim01G0148600' => 'rsi', 'Rhsim05G0194400' => 'rsi', 'Rhsim07G0000700' => 'rsi', 'Rhsim07G0000800' => 'rsi', 'Rhsim07G0027900' => 'rsi', 'Rhsim09G0149500' => 'rsi', 'RhsimUnG0186900' => 'rsi', 'Sabra01G0089900' => 'sbr', 'Sabra02G0114700' => 'sbr', 'Sabra02G0116300' => 'sbr', 'Sabra03G0080100' => 'sbr', 'Sabra08G0024300' => 'sbr', 'Sabra10G0174300' => 'sbr', 'Sabra14G0048900' => 'sbr', 'Sabra14G0076500' => 'sbr', 'SalBow5G2513' => 'sbo', 'Sc01g0002300' => 'sci', 'Sc01g0004450' => 'sci', 'Sc06g0001680' => 'sci', 'Sc23g0003580' => 'sci', 'Sed0000913' => 'sed', 'Sed0001655' => 'sed', 'Sed0007745' => 'sed', 'Sed0010951' => 'sed', 'Sed0017599' => 'sed', 'Sed0021405' => 'sed', 'Sed0022810' => 'sed', 'SEGI_07099' => 'sgi', 'SEGI_11931' => 'sgi', 'SEGI_13187' => 'sgi', 'SEGI_29958' => 'sgi', 'SEGI_36351' => 'sgi', 'SGA_v2.0_scaffold126G33770' => 'sas', 'SGA_v2.0_scaffold153G37003' => 'sas', 'SGA_v2.0_scaffold2G01359' => 'sas', 'SGA_v2.0_scaffold5G03064' => 'sas', 'SGA_v2.0_scaffold95G28903' => 'sas', 'SHI12701' => 'shi', 'SHI26410' => 'shi', 'SHI38997' => 'shi', 'SHI53759' => 'shi', 'SHI53886' => 'shi', 'SHI54714' => 'shi', 'SMO011G0041' => 'smo', 'SMO146G0251' => 'smo', 'SMO160G0004' => 'smo', 'SMO174G0057' => 'smo', 'SMO244G0089' => 'smo', 'SMO296G0011' => 'smo', 'Solyc01g091280.3' => 'sly', 'Solyc05g047610.3' => 'sly', 'Solyc05g047640.3' => 'sly', 'Solyc05g055630.3' => 'sly', 'Solyc10g018160.2' => 'sly', 'Solyc10g084820.2' => 'sly', 'Solyc10g086565.2' => 'sly', 'Sopen01g037030' => 'spe', 'Sopen05g027920' => 'spe', 'Sopen05g034070' => 'spe', 'Sopen10g007260' => 'spe', 'Sopen10g034260' => 'spe', 'Sopen10g035950' => 'spe', 'Sp3g07710' => 'spa', 'Sp4g27420' => 'spa', 'Sp5g02450' => 'spa', 'Sp6g01280' => 'spa', 'Sp6g38480' => 'spa', 'Sp7g20780' => 'spa', 'TAR374G1413' => 'tar', 'TAR623G1777' => 'tar', 'TAR629G2370' => 'tar', 'TAR633G1759' => 'tar', 'TAR636G3387' => 'tar', 'THA.LOC104802447' => 'tha', 'THA.LOC104813916' => 'tha', 'THA.LOC104816423' => 'tha', 'THA.LOC104817246' => 'tha', 'THA.LOC104825895' => 'tha', 'Thecc.01G335200' => 'tca', 'Thecc.01G377400' => 'tca', 'Thecc.03G262200' => 'tca', 'Thecc.05G036800' => 'tca', 'Thecc.10G080500' => 'tca', 'Thecc.10G080800' => 'tca', 'Thhalv10001560m.g' => 'esa', 'Thhalv10006120m.g' => 'esa', 'Thhalv10014375m.g' => 'esa', 'Thhalv10021264m.g' => 'esa', 'Thhalv10028856m.g' => 'esa', 'TPR.G1914' => 'tpr', 'TPR.G4757' => 'tpr', 'TPR.G5595' => 'tpr', 'TWI14G0952' => 'twi', 'TWI14G1307' => 'twi', 'TWI38G2143' => 'twi', 'TWI59G0826' => 'twi', 'TWI77G0527' => 'twi', 'TWI81G0150' => 'twi', 'unitig_21.g21018' => 'ugi', 'unitig_26.g9725' => 'ugi', 'unitig_744.g24653' => 'ugi', 'unitig_749.g13778' => 'ugi', 'unitig_899.g15035' => 'ugi', 'vmacro04296' => 'vma', 'vmacro04852' => 'vma', 'vmacro13404' => 'vma', 'vmacro20169' => 'vma', 'vmacro21014' => 'vma', 'VMungo0331G0237' => 'vmu', 'VMungo0331G0706' => 'vmu', 'VMungo0331G1361' => 'vmu', 'VMungo0331G1489' => 'vmu', 'VMungo0540G1037' => 'vmu', 'VMungo0720G2487' => 'vmu', 'VMungo0720G2721' => 'vmu', 'Zm00001eb086860' => 'zma', 'Zm00001eb104760' => 'zma', 'Zm00001eb148220' => 'zma', 'Zm00001eb259030' => 'zma', 'Zm00001eb289590' => 'zma', 'Zm00001eb420150' => 'zma' ), 'gf_id' => 'HOM05D000968', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000968' ), 'data_identifier' => 'HOM05D000968', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000968', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p31690' => 'bna', 'A03p36040' => 'bna', 'A03p53730' => 'bna', 'A04p01410' => 'bna', 'A05p05420' => 'bna', 'A05p39630' => 'bna', 'A05p39640' => 'bna', 'A09p00970' => 'bna', 'A09p53060' => 'bna', 'A10p31890' => 'bna', 'Aa31LG10G15040' => 'aar', 'Aa31LG1G21090' => 'aar', 'Aa31LG1G26900' => 'aar', 'Aa31LG3G1820' => 'aar', 'Aa31LG5G1100' => 'aar', 'Aa31LG6G4740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2265' => 'aag', 'Actinidia07998' => 'ach', 'Actinidia11266' => 'ach', 'Actinidia12682' => 'ach', 'Actinidia26479' => 'ach', 'Actinidia31406' => 'ach', 'Actinidia32437' => 'ach', 'Actinidia38862' => 'ach', 'Ah.05g174230' => 'amhyb', 'Ah.05g179070' => 'amhyb', 'Ah.05g179090' => 'amhyb', 'Ah.12g059950' => 'amhyb', 'AL3G20480' => 'aly', 'AL4G44520' => 'aly', 'AL5G43110' => 'aly', 'AL6G13890' => 'aly', 'AL6G52620' => 'aly', 'AL7G30830' => 'aly', 'Aqoxy1G00899' => 'aox', 'Aqoxy5G04333' => 'aox', 'Aqoxy7G00641' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3IZ0NN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4EF6AW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W9P8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79GA3M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C43NQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFCU6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G95YVJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCHK29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LU1UG8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX91RN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGB4B1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8DA0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9H7JI' => 'arhy', 'AT3G09320' => 'ath', 'AT3G60800' => 'ath', 'AT4G00840' => 'ath', 'AT4G22750' => 'ath', 'AT5G04270' => 'ath', 'ATR0090G003' => 'atr', 'ATR0559G349' => 'atr', 'ATR0680G261' => 'atr', 'ATR0810G048' => 'atr', 'Atru.chr12.831' => 'acertr', 'Atru.chr5.303' => 'acertr', 'Atru.chr5.748' => 'acertr', 'Atru.chr8.1999' => 'acertr', 'Atru.chr9.1436' => 'acertr', 'AUR62004211' => 'cqu', 'AUR62004548' => 'cqu', 'AUR62013637' => 'cqu', 'AUR62022662' => 'cqu', 'AUR62025777' => 'cqu', 'AUR62042386' => 'cqu', 'BcaB01g02310' => 'bca', 'BcaB01g06062' => 'bca', 'BcaB02g08975' => 'bca', 'BcaB02g08980' => 'bca', 'BcaC01g04228' => 'bca', 'BcaC01g06830' => 'bca', 'BcaC02g10186' => 'bca', 'BcaC02g12214' => 'bca', 'BcaC04g24101' => 'bca', 'BcaC05g29520' => 'bca', 'BcaC05g29661' => 'bca', 'BcaC06g32130' => 'bca', 'BcaC06g32131' => 'bca', 'BcaC07g40601' => 'bca', 'BcaC07g42641' => 'bca', 'BcaNung01038' => 'bca', 'BcaNung01676' => 'bca', 'BcaNung02480' => 'bca', 'BcaNung07376' => 'bca', 'BolC3t16146H' => 'bol', 'BolC3t16637H' => 'bol', 'BolC4t22257H' => 'bol', 'BolC4t24728H' => 'bol', 'BolC5t34517H' => 'bol', 'BolC7t45703H' => 'bol', 'BolC8t51166H' => 'bol', 'BolC9t53038H' => 'bol', 'BolC9t60000H' => 'bol', 'BraA01t01345Z' => 'bra', 'BraA01t01346Z' => 'bra', 'BraA01t01348Z' => 'bra', 'BraA03t12347Z' => 'bra', 'BraA03t12775Z' => 'bra', 'BraA03t14439Z' => 'bra', 'BraA04t15860Z' => 'bra', 'BraA05t19511Z' => 'bra', 'BraA05t22746Z' => 'bra', 'BraA09t35767Z' => 'bra', 'BraA09t40732Z' => 'bra', 'BraA10t45233Z' => 'bra', 'C03p38720' => 'bna', 'C03p43680' => 'bna', 'C04p06350' => 'bna', 'C04p31800' => 'bna', 'C05p58680' => 'bna', 'C07p52110' => 'bna', 'C08p35760' => 'bna', 'C09p01050' => 'bna', 'C09p72600' => 'bna', 'CAN.G106.2' => 'can', 'CAN.G1482.1' => 'can', 'CAN.G324.12' => 'can', 'CAN.G388.20' => 'can', 'CAN.G412.7' => 'can', 'CAN.G694.32' => 'can', 'CAN.G92.12' => 'can', 'CANSAT11G2353' => 'cansat', 'CANSAT21G1398' => 'cansat', 'CANSAT56G2456' => 'cansat', 'CANSAT56G3031' => 'cansat', 'CANSAT56G4539' => 'cansat', 'CARHR083680' => 'chi', 'CARHR171190' => 'chi', 'CARHR209010' => 'chi', 'CARHR229680' => 'chi', 'CARHR249490' => 'chi', 'Carub.0003s0844' => 'cru', 'Carub.0005s2755' => 'cru', 'Carub.0006s0322' => 'cru', 'Carub.0006s3586' => 'cru', 'Carub.0007s1855' => 'cru', 'Ca_07808_v3' => 'car', 'Ca_09535_v3' => 'car', 'Ca_10548_v3' => 'car', 'Ca_19913_v3' => 'car', 'Ca_19916_v3' => 'car', 'Ca_19975_v3' => 'car', 'CBR_g22876' => 'cbr', 'CBR_g22879' => 'cbr', 'CBR_g38491' => 'cbr', 'CBR_g54185' => 'cbr', 'CBR_g54190' => 'cbr', 'Cc02_g11020' => 'ccan', 'Cc02_g23920' => 'ccan', 'Cc02_g39860' => 'ccan', 'Cc02_g39870' => 'ccan', 'Cc03_g06760' => 'ccan', 'Cc06_g02450' => 'ccan', 'Cc09_g09450' => 'ccan', 'CDE02G1959' => 'cde', 'CDE04G0600' => 'cde', 'CDE07G1996' => 'cde', 'CDE07G2078' => 'cde', 'CDE11G0611' => 'cde', 'Cfa001683' => 'cfa', 'Cfa001734' => 'cfa', 'Cfa001737' => 'cfa', 'Cfa003751' => 'cfa', 'Cfa012019' => 'cfa', 'Cfa017353' => 'cfa', 'Cfa017732' => 'cfa', 'Cfa022464' => 'cfa', 'Ciclev10012400m.g' => 'ccl', 'Ciclev10021242m.g' => 'ccl', 'Ciclev10021302m.g' => 'ccl', 'Ciclev10021463m.g' => 'ccl', 'Ciclev10032359m.g' => 'ccl', 'CiPaw.01G081000' => 'cil', 'CiPaw.01G262500' => 'cil', 'CiPaw.01G269800' => 'cil', 'CiPaw.02G168400' => 'cil', 'CiPaw.05G119500' => 'cil', 'CiPaw.11G147300' => 'cil', 'ClCG01G003630' => 'cla', 'ClCG05G000510' => 'cla', 'ClCG05G002300' => 'cla', 'ClCG08G007650' => 'cla', 'ClCG10G021250' => 'cla', 'COL.COLO4_06218' => 'col', 'COL.COLO4_12538' => 'col', 'COL.COLO4_14775' => 'col', 'COL.COLO4_23875' => 'col', 'Cpa.g.sc141.16' => 'cpa', 'Cpa.g.sc169.16' => 'cpa', 'Cpa.g.sc244.4' => 'cpa', 'Cpa.g.sc244.5' => 'cpa', 'Cpa.g.sc29.87' => 'cpa', 'Cpa.g.sc53.115' => 'cpa', 'Cre03.g207502' => 'cre', 'Cre06.g277000' => 'cre', 'Cre09.g394050' => 'cre', 'CsaV3_3G007680' => 'csa', 'CsaV3_3G009710' => 'csa', 'CsaV3_3G034790' => 'csa', 'CsaV3_5G003750' => 'csa', 'CsaV3_6G036620' => 'csa', 'CSS0002288' => 'camsi', 'CSS0011250' => 'camsi', 'CSS0021619' => 'camsi', 'CSS0046701' => 'camsi', 'DCAR_006420' => 'dca', 'DCAR_006865' => 'dca', 'DCAR_008558' => 'dca', 'DCAR_028754' => 'dca', 'DCAR_028755' => 'dca', 'Dinv31218' => 'din', 'Dinv32371' => 'din', 'Dinv34250' => 'din', 'Dinv37156' => 'din', 'Dinv43704' => 'din', 'Duzib093G1811' => 'dzi', 'Duzib106G1622' => 'dzi', 'Duzib114G0504' => 'dzi', 'Duzib128G0338' => 'dzi', 'Duzib128G1577' => 'dzi', 'Duzib133G0104' => 'dzi', 'Duzib133G1080' => 'dzi', 'Duzib138G0324' => 'dzi', 'Duzib138G0394' => 'dzi', 'Duzib205G0122' => 'dzi', 'Duzib268G1020' => 'dzi', 'Duzib268G1359' => 'dzi', 'ECA232G3929' => 'eca', 'ECA236G2210' => 'eca', 'ECA236G2287' => 'eca', 'ECA240G4568' => 'eca', 'ECA247G0894' => 'eca', 'EL10Ac1g00200' => 'bvu', 'EL10Ac1g00886' => 'bvu', 'EL10As1g23091' => 'bvu', 'EL10As1g23092' => 'bvu', 'Eucgr.A01284' => 'egr', 'Eucgr.A01285' => 'egr', 'Eucgr.D02456' => 'egr', 'Eucgr.E00018' => 'egr', 'Eucgr.E01439' => 'egr', 'Eucgr.G02859' => 'egr', 'FAN01G0168' => 'fan', 'FAN01G0453' => 'fan', 'FAN01G2761' => 'fan', 'FAN02G1239' => 'fan', 'FAN03G0645' => 'fan', 'FAN03G2707' => 'fan', 'FAN03G2978' => 'fan', 'FAN04G0227' => 'fan', 'FAN06G0091' => 'fan', 'FAN06G1418' => 'fan', 'FAN06G1512' => 'fan', 'FAN06G1986' => 'fan', 'FAN06G2905' => 'fan', 'FAN06G4325' => 'fan', 'FAN08G0033' => 'fan', 'FAN09G0642' => 'fan', 'FAN10G1763' => 'fan', 'FAN10G2026' => 'fan', 'FAN10G2513' => 'fan', 'FAN10G3402' => 'fan', 'FAN10G3564' => 'fan', 'FAN10G3987' => 'fan', 'FAN13G1490' => 'fan', 'FAN14G5857' => 'fan', 'FAN18G1188' => 'fan', 'FvH4_5g00750' => 'fve', 'FvH4_6g13410' => 'fve', 'FvH4_7g11740' => 'fve', 'FvH4_7g17410' => 'fve', 'FvH4_7g18860' => 'fve', 'Glyma.01G099100' => 'gma', 'Glyma.01G142300' => 'gma', 'Glyma.03G025500' => 'gma', 'Glyma.03G069700' => 'gma', 'Glyma.03G260000' => 'gma', 'Glyma.09G269800' => 'gma', 'Glyma.10G208700' => 'gma', 'Glyma.18G220400' => 'gma', 'Glyma.20G182000' => 'gma', 'Gohir.A01G221726' => 'ghi', 'Gohir.A07G134600' => 'ghi', 'Gohir.A07G146000' => 'ghi', 'Gohir.A08G173900' => 'ghi', 'Gohir.A09G194900' => 'ghi', 'Gohir.A10G204100' => 'ghi', 'Gohir.A11G080600' => 'ghi', 'Gohir.A11G327500' => 'ghi', 'Gohir.A12G101800' => 'ghi', 'Gohir.D01G211200' => 'ghi', 'Gohir.D07G139200' => 'ghi', 'Gohir.D07G152100' => 'ghi', 'Gohir.D08G192600' => 'ghi', 'Gohir.D09G189200' => 'ghi', 'Gohir.D10G212000' => 'ghi', 'Gohir.D11G085200' => 'ghi', 'Gohir.D11G346400' => 'ghi', 'Gohir.D12G104800' => 'ghi', 'Gorai.001G151300' => 'gra', 'Gorai.001G174100' => 'gra', 'Gorai.002G257000' => 'gra', 'Gorai.004G202600' => 'gra', 'Gorai.007G090900' => 'gra', 'Gorai.007G376700' => 'gra', 'Gorai.008G114100' => 'gra', 'Gorai.011G237900' => 'gra', 'GSVIVG01005450001' => 'vvi', 'GSVIVG01016232001' => 'vvi', 'GSVIVG01026157001' => 'vvi', 'GSVIVG01027419001' => 'vvi', 'GSVIVG01027631001' => 'vvi', 'GSVIVG01034143001' => 'vvi', 'HanXRQChr03g0093921' => 'han', 'HanXRQChr04g0120001' => 'han', 'HanXRQChr04g0122561' => 'han', 'HanXRQChr09g0246851' => 'han', 'HanXRQChr10g0293311' => 'han', 'HanXRQChr13g0425231' => 'han', 'HanXRQChr16g0532571' => 'han', 'Haze_09050' => 'cav', 'Haze_15715' => 'cav', 'Haze_15716' => 'cav', 'Haze_16803' => 'cav', 'Haze_16850' => 'cav', 'Hma1.2p1_0301F.1_g118655' => 'hma', 'Hma1.2p1_0309F.1_g120590' => 'hma', 'Hma1.2p1_0936F.1_g238900' => 'hma', 'Hma1.2p1_3552F.1_g336740' => 'hma', 'HPP92_003520' => 'vpl', 'HPP92_006628' => 'vpl', 'HPP92_006645' => 'vpl', 'HPP92_014669' => 'vpl', 'HPP92_015077' => 'vpl', 'Hund16742' => 'sun', 'Hund17022' => 'sun', 'Lalb_Chr02g0152131' => 'lal', 'Lalb_Chr05g0225371' => 'lal', 'Lalb_Chr07g0189841' => 'lal', 'Lalb_Chr07g0192961' => 'lal', 'Lalb_Chr12g0208221' => 'lal', 'Lalb_Chr13g0291211' => 'lal', 'Lalb_Chr13g0291781' => 'lal', 'Lalb_Chr18g0044651' => 'lal', 'Lalb_Chr21g0313731' => 'lal', 'Lj1g0022533' => 'lja', 'Lj2A18T50' => 'lonja', 'Lj2A92G93' => 'lonja', 'Lj3A965T73' => 'lonja', 'Lj3g0000673' => 'lja', 'Lj3g0002666' => 'lja', 'Lj4g0016985' => 'lja', 'Lj5g0003625' => 'lja', 'Lj7A529G36' => 'lonja', 'Lj9A569T49' => 'lonja', 'Lj9A604T63' => 'lonja', 'Lsat_1_v5_gn_3_132060' => 'lsa', 'Lsat_1_v5_gn_4_68941' => 'lsa', 'Lsat_1_v5_gn_5_95580' => 'lsa', 'Lsat_1_v5_gn_7_161' => 'lsa', 'Lsat_1_v5_gn_7_7041' => 'lsa', 'Lsat_1_v5_gn_9_33481' => 'lsa', 'Lsat_1_v5_gn_9_68260' => 'lsa', 'Manes.01G073100' => 'mes', 'Manes.01G266300' => 'mes', 'Manes.02G033300' => 'mes', 'Manes.05G017900' => 'mes', 'Manes.05G046100' => 'mes', 'Manes.08G080900' => 'mes', 'Manes.10G049400' => 'mes', 'Mapoly0009s0186' => 'mpo', 'Mapoly0036s0118' => 'mpo', 'Mapoly0101s0046' => 'mpo', 'MBI04_g30218_MAGBIO' => 'mbi', 'MBI04_g35564_MAGBIO' => 'mbi', 'MBI12_g34011_MAGBIO' => 'mbi', 'MBI14_g04655_MAGBIO' => 'mbi', 'MCO07G653' => 'mco', 'MCO10G173' => 'mco', 'MD01G1087100' => 'mdo', 'MD01G1104200' => 'mdo', 'MD02G1205100' => 'mdo', 'MD04G1079200' => 'mdo', 'MD04G1131400' => 'mdo', 'MD07G1121600' => 'mdo', 'MD07G1157300' => 'mdo', 'MD07G1171000' => 'mdo', 'MD12G1144500' => 'mdo', 'Medtr1g094610' => 'mtr', 'Medtr4g021795' => 'mtr', 'Medtr4g023760' => 'mtr', 'Medtr7g118050' => 'mtr', 'MELO3C005582.2' => 'cme', 'MELO3C005989.2' => 'cme', 'MELO3C006192.2' => 'cme', 'MELO3C009248.2' => 'cme', 'MELO3C019817.2' => 'cme', 'Migut.B01625' => 'egut', 'Migut.B01915' => 'egut', 'Migut.F01721' => 'egut', 'Migut.J00314' => 'egut', 'MSTRG.20742' => 'ama', 'MSTRG.8134' => 'ama', 'Nitab4.5_0000096g0010' => 'nta', 'Nitab4.5_0000202g0030' => 'nta', 'Nitab4.5_0000216g0370' => 'nta', 'Nitab4.5_0000457g0230' => 'nta', 'Nitab4.5_0001702g0170' => 'nta', 'Nitab4.5_0003607g0010' => 'nta', 'Nitab4.5_0004917g0020' => 'nta', 'Nitab4.5_0007059g0010' => 'nta', 'Nitab4.5_0007184g0010' => 'nta', 'Nitab4.5_0007346g0020' => 'nta', 'Nn1g00410' => 'nnu', 'Nn1g01252' => 'nnu', 'Nn2g11168' => 'nnu', 'Nn2g13403' => 'nnu', 'Nn2g13760' => 'nnu', 'Nn4g26380' => 'nnu', 'Oeu000806.2' => 'oeu', 'Oeu005788.1' => 'oeu', 'Oeu006900.3' => 'oeu', 'Oeu007797.1' => 'oeu', 'Oeu011932.1' => 'oeu', 'Oeu022739.1' => 'oeu', 'Oeu037918.1' => 'oeu', 'Oeu055490.2' => 'oeu', 'Os01g0844400' => 'osa', 'Os02g0819100' => 'osa', 'Os03g0804300' => 'osa', 'Os05g0458000' => 'osa', 'Os07g0467800' => 'osa', 'Os12g0602200' => 'osa', 'Peaxi162Scf00013g03444' => 'pax', 'Peaxi162Scf00094g01120' => 'pax', 'Peaxi162Scf00191g01211' => 'pax', 'Peaxi162Scf00238g01110' => 'pax', 'Peaxi162Scf00330g00719' => 'pax', 'Peaxi162Scf00627g00018' => 'pax', 'PGR031G2686' => 'pgr', 'PGR042G0809' => 'pgr', 'PGR142G0193' => 'pgr', 'PGSC0003DMG400011066' => 'stu', 'PGSC0003DMG400012041' => 'stu', 'PGSC0003DMG400013678' => 'stu', 'PGSC0003DMG400023477' => 'stu', 'PGSC0003DMG400025956' => 'stu', 'PGSC0003DMG401019151' => 'stu', 'Phvul.006G116400' => 'pvu', 'Phvul.007G097300' => 'pvu', 'Phvul.010G015000' => 'pvu', 'Phvul.010G083900' => 'pvu', 'Potri.001G117100' => 'ptr', 'Potri.002G147300' => 'ptr', 'Potri.003G115600' => 'ptr', 'Potri.006G087400' => 'ptr', 'Potri.010G226100' => 'ptr', 'Potri.014G069200' => 'ptr', 'Potri.014G104000' => 'ptr', 'Potri.016G100200' => 'ptr', 'Pp3c10_20450' => 'ppa', 'Pp3c1_42400' => 'ppa', 'Pp3c3_24390' => 'ppa', 'Pp3c3_2860' => 'ppa', 'PRCOL_00003193' => 'pco', 'Prupe.2G144500' => 'ppe', 'Prupe.2G195700' => 'ppe', 'Prupe.2G209800' => 'ppe', 'Prupe.5G080000' => 'ppe', 'Prupe.6G257900' => 'ppe', 'Psat3g001160' => 'psa', 'Psat6g181880' => 'psa', 'Psat7g233720' => 'psa', 'PSO063G7587' => 'pso', 'PSO339G2145' => 'pso', 'PSO339G3369' => 'pso', 'PSO478G2747' => 'pso', 'PSO513G0140' => 'pso', 'PSO782G1614' => 'pso', 'PSO782G4889' => 'pso', 'PSO782G5485' => 'pso', 'PSO801G0241' => 'pso', 'QL07p048854' => 'qlo', 'QL08p046745' => 'qlo', 'QL08p052606' => 'qlo', 'QL08p053414' => 'qlo', 'QL08p054868' => 'qlo', 'RcHm_v2.0_Chr1g0350251' => 'rch', 'RcHm_v2.0_Chr1g0360851' => 'rch', 'RcHm_v2.0_Chr1g0362791' => 'rch', 'RcHm_v2.0_Chr3g0466281' => 'rch', 'RcHm_v2.0_Chr7g0201481' => 'rch', 'Rhsim01G0148600' => 'rsi', 'Rhsim05G0194400' => 'rsi', 'Rhsim07G0000700' => 'rsi', 'Rhsim07G0000800' => 'rsi', 'Rhsim07G0027900' => 'rsi', 'Rhsim09G0149500' => 'rsi', 'RhsimUnG0186900' => 'rsi', 'Sabra01G0089900' => 'sbr', 'Sabra02G0114700' => 'sbr', 'Sabra02G0116300' => 'sbr', 'Sabra03G0080100' => 'sbr', 'Sabra08G0024300' => 'sbr', 'Sabra10G0174300' => 'sbr', 'Sabra14G0048900' => 'sbr', 'Sabra14G0076500' => 'sbr', 'SalBow5G2513' => 'sbo', 'Sc01g0002300' => 'sci', 'Sc01g0004450' => 'sci', 'Sc06g0001680' => 'sci', 'Sc23g0003580' => 'sci', 'Sed0000913' => 'sed', 'Sed0001655' => 'sed', 'Sed0007745' => 'sed', 'Sed0010951' => 'sed', 'Sed0017599' => 'sed', 'Sed0021405' => 'sed', 'Sed0022810' => 'sed', 'SEGI_07099' => 'sgi', 'SEGI_11931' => 'sgi', 'SEGI_13187' => 'sgi', 'SEGI_29958' => 'sgi', 'SEGI_36351' => 'sgi', 'SGA_v2.0_scaffold126G33770' => 'sas', 'SGA_v2.0_scaffold153G37003' => 'sas', 'SGA_v2.0_scaffold2G01359' => 'sas', 'SGA_v2.0_scaffold5G03064' => 'sas', 'SGA_v2.0_scaffold95G28903' => 'sas', 'SHI12701' => 'shi', 'SHI26410' => 'shi', 'SHI38997' => 'shi', 'SHI53759' => 'shi', 'SHI53886' => 'shi', 'SHI54714' => 'shi', 'SMO011G0041' => 'smo', 'SMO146G0251' => 'smo', 'SMO160G0004' => 'smo', 'SMO174G0057' => 'smo', 'SMO244G0089' => 'smo', 'SMO296G0011' => 'smo', 'Solyc01g091280.3' => 'sly', 'Solyc05g047610.3' => 'sly', 'Solyc05g047640.3' => 'sly', 'Solyc05g055630.3' => 'sly', 'Solyc10g018160.2' => 'sly', 'Solyc10g084820.2' => 'sly', 'Solyc10g086565.2' => 'sly', 'Sopen01g037030' => 'spe', 'Sopen05g027920' => 'spe', 'Sopen05g034070' => 'spe', 'Sopen10g007260' => 'spe', 'Sopen10g034260' => 'spe', 'Sopen10g035950' => 'spe', 'Sp3g07710' => 'spa', 'Sp4g27420' => 'spa', 'Sp5g02450' => 'spa', 'Sp6g01280' => 'spa', 'Sp6g38480' => 'spa', 'Sp7g20780' => 'spa', 'TAR374G1413' => 'tar', 'TAR623G1777' => 'tar', 'TAR629G2370' => 'tar', 'TAR633G1759' => 'tar', 'TAR636G3387' => 'tar', 'THA.LOC104802447' => 'tha', 'THA.LOC104813916' => 'tha', 'THA.LOC104816423' => 'tha', 'THA.LOC104817246' => 'tha', 'THA.LOC104825895' => 'tha', 'Thecc.01G335200' => 'tca', 'Thecc.01G377400' => 'tca', 'Thecc.03G262200' => 'tca', 'Thecc.05G036800' => 'tca', 'Thecc.10G080500' => 'tca', 'Thecc.10G080800' => 'tca', 'Thhalv10001560m.g' => 'esa', 'Thhalv10006120m.g' => 'esa', 'Thhalv10014375m.g' => 'esa', 'Thhalv10021264m.g' => 'esa', 'Thhalv10028856m.g' => 'esa', 'TPR.G1914' => 'tpr', 'TPR.G4757' => 'tpr', 'TPR.G5595' => 'tpr', 'TWI14G0952' => 'twi', 'TWI14G1307' => 'twi', 'TWI38G2143' => 'twi', 'TWI59G0826' => 'twi', 'TWI77G0527' => 'twi', 'TWI81G0150' => 'twi', 'unitig_21.g21018' => 'ugi', 'unitig_26.g9725' => 'ugi', 'unitig_744.g24653' => 'ugi', 'unitig_749.g13778' => 'ugi', 'unitig_899.g15035' => 'ugi', 'vmacro04296' => 'vma', 'vmacro04852' => 'vma', 'vmacro13404' => 'vma', 'vmacro20169' => 'vma', 'vmacro21014' => 'vma', 'VMungo0331G0237' => 'vmu', 'VMungo0331G0706' => 'vmu', 'VMungo0331G1361' => 'vmu', 'VMungo0331G1489' => 'vmu', 'VMungo0540G1037' => 'vmu', 'VMungo0720G2487' => 'vmu', 'VMungo0720G2721' => 'vmu', 'Zm00001eb086860' => 'zma', 'Zm00001eb104760' => 'zma', 'Zm00001eb148220' => 'zma', 'Zm00001eb259030' => 'zma', 'Zm00001eb289590' => 'zma', 'Zm00001eb420150' => 'zma' ) $gf_id = 'HOM05D000968' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000968' ) $data_identifier = 'HOM05D000968' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 19, 'bol' => (int) 9, 'bra' => (int) 12, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 5, 'ccan' => (int) 7, 'cde' => (int) 5, 'cfa' => (int) 8, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 4, 'dca' => (int) 5, 'din' => (int) 5, 'dzi' => (int) 12, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 25, 'fve' => (int) 5, 'gma' => (int) 9, 'ghi' => (int) 18, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 7, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 5, 'sun' => (int) 2, 'lal' => (int) 9, 'lja' => (int) 5, 'lonja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 9, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 2, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 3, 'stu' => (int) 6, 'pvu' => (int) 4, 'ptr' => (int) 8, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 3, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 1, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 5, 'sas' => (int) 5, 'shi' => (int) 6, 'smo' => (int) 6, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 3, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420150' $species_info = array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ) $local_species = 'cla' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000968', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p31690' => 'bna', 'A03p36040' => 'bna', 'A03p53730' => 'bna', 'A04p01410' => 'bna', 'A05p05420' => 'bna', 'A05p39630' => 'bna', 'A05p39640' => 'bna', 'A09p00970' => 'bna', 'A09p53060' => 'bna', 'A10p31890' => 'bna', 'Aa31LG10G15040' => 'aar', 'Aa31LG1G21090' => 'aar', 'Aa31LG1G26900' => 'aar', 'Aa31LG3G1820' => 'aar', 'Aa31LG5G1100' => 'aar', 'Aa31LG6G4740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2265' => 'aag', 'Actinidia07998' => 'ach', 'Actinidia11266' => 'ach', 'Actinidia12682' => 'ach', 'Actinidia26479' => 'ach', 'Actinidia31406' => 'ach', 'Actinidia32437' => 'ach', 'Actinidia38862' => 'ach', 'Ah.05g174230' => 'amhyb', 'Ah.05g179070' => 'amhyb', 'Ah.05g179090' => 'amhyb', 'Ah.12g059950' => 'amhyb', 'AL3G20480' => 'aly', 'AL4G44520' => 'aly', 'AL5G43110' => 'aly', 'AL6G13890' => 'aly', 'AL6G52620' => 'aly', 'AL7G30830' => 'aly', 'Aqoxy1G00899' => 'aox', 'Aqoxy5G04333' => 'aox', 'Aqoxy7G00641' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3IZ0NN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4EF6AW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W9P8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79GA3M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C43NQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFCU6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G95YVJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCHK29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LU1UG8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX91RN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGB4B1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8DA0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9H7JI' => 'arhy', 'AT3G09320' => 'ath', 'AT3G60800' => 'ath', 'AT4G00840' => 'ath', 'AT4G22750' => 'ath', 'AT5G04270' => 'ath', 'ATR0090G003' => 'atr', 'ATR0559G349' => 'atr', 'ATR0680G261' => 'atr', 'ATR0810G048' => 'atr', 'Atru.chr12.831' => 'acertr', 'Atru.chr5.303' => 'acertr', 'Atru.chr5.748' => 'acertr', 'Atru.chr8.1999' => 'acertr', 'Atru.chr9.1436' => 'acertr', 'AUR62004211' => 'cqu', 'AUR62004548' => 'cqu', 'AUR62013637' => 'cqu', 'AUR62022662' => 'cqu', 'AUR62025777' => 'cqu', 'AUR62042386' => 'cqu', 'BcaB01g02310' => 'bca', 'BcaB01g06062' => 'bca', 'BcaB02g08975' => 'bca', 'BcaB02g08980' => 'bca', 'BcaC01g04228' => 'bca', 'BcaC01g06830' => 'bca', 'BcaC02g10186' => 'bca', 'BcaC02g12214' => 'bca', 'BcaC04g24101' => 'bca', 'BcaC05g29520' => 'bca', 'BcaC05g29661' => 'bca', 'BcaC06g32130' => 'bca', 'BcaC06g32131' => 'bca', 'BcaC07g40601' => 'bca', 'BcaC07g42641' => 'bca', 'BcaNung01038' => 'bca', 'BcaNung01676' => 'bca', 'BcaNung02480' => 'bca', 'BcaNung07376' => 'bca', 'BolC3t16146H' => 'bol', 'BolC3t16637H' => 'bol', 'BolC4t22257H' => 'bol', 'BolC4t24728H' => 'bol', 'BolC5t34517H' => 'bol', 'BolC7t45703H' => 'bol', 'BolC8t51166H' => 'bol', 'BolC9t53038H' => 'bol', 'BolC9t60000H' => 'bol', 'BraA01t01345Z' => 'bra', 'BraA01t01346Z' => 'bra', 'BraA01t01348Z' => 'bra', 'BraA03t12347Z' => 'bra', 'BraA03t12775Z' => 'bra', 'BraA03t14439Z' => 'bra', 'BraA04t15860Z' => 'bra', 'BraA05t19511Z' => 'bra', 'BraA05t22746Z' => 'bra', 'BraA09t35767Z' => 'bra', 'BraA09t40732Z' => 'bra', 'BraA10t45233Z' => 'bra', 'C03p38720' => 'bna', 'C03p43680' => 'bna', 'C04p06350' => 'bna', 'C04p31800' => 'bna', 'C05p58680' => 'bna', 'C07p52110' => 'bna', 'C08p35760' => 'bna', 'C09p01050' => 'bna', 'C09p72600' => 'bna', 'CAN.G106.2' => 'can', 'CAN.G1482.1' => 'can', 'CAN.G324.12' => 'can', 'CAN.G388.20' => 'can', 'CAN.G412.7' => 'can', 'CAN.G694.32' => 'can', 'CAN.G92.12' => 'can', 'CANSAT11G2353' => 'cansat', 'CANSAT21G1398' => 'cansat', 'CANSAT56G2456' => 'cansat', 'CANSAT56G3031' => 'cansat', 'CANSAT56G4539' => 'cansat', 'CARHR083680' => 'chi', 'CARHR171190' => 'chi', 'CARHR209010' => 'chi', 'CARHR229680' => 'chi', 'CARHR249490' => 'chi', 'Carub.0003s0844' => 'cru', 'Carub.0005s2755' => 'cru', 'Carub.0006s0322' => 'cru', 'Carub.0006s3586' => 'cru', 'Carub.0007s1855' => 'cru', 'Ca_07808_v3' => 'car', 'Ca_09535_v3' => 'car', 'Ca_10548_v3' => 'car', 'Ca_19913_v3' => 'car', 'Ca_19916_v3' => 'car', 'Ca_19975_v3' => 'car', 'CBR_g22876' => 'cbr', 'CBR_g22879' => 'cbr', 'CBR_g38491' => 'cbr', 'CBR_g54185' => 'cbr', 'CBR_g54190' => 'cbr', 'Cc02_g11020' => 'ccan', 'Cc02_g23920' => 'ccan', 'Cc02_g39860' => 'ccan', 'Cc02_g39870' => 'ccan', 'Cc03_g06760' => 'ccan', 'Cc06_g02450' => 'ccan', 'Cc09_g09450' => 'ccan', 'CDE02G1959' => 'cde', 'CDE04G0600' => 'cde', 'CDE07G1996' => 'cde', 'CDE07G2078' => 'cde', 'CDE11G0611' => 'cde', 'Cfa001683' => 'cfa', 'Cfa001734' => 'cfa', 'Cfa001737' => 'cfa', 'Cfa003751' => 'cfa', 'Cfa012019' => 'cfa', 'Cfa017353' => 'cfa', 'Cfa017732' => 'cfa', 'Cfa022464' => 'cfa', 'Ciclev10012400m.g' => 'ccl', 'Ciclev10021242m.g' => 'ccl', 'Ciclev10021302m.g' => 'ccl', 'Ciclev10021463m.g' => 'ccl', 'Ciclev10032359m.g' => 'ccl', 'CiPaw.01G081000' => 'cil', 'CiPaw.01G262500' => 'cil', 'CiPaw.01G269800' => 'cil', 'CiPaw.02G168400' => 'cil', 'CiPaw.05G119500' => 'cil', 'CiPaw.11G147300' => 'cil', 'ClCG01G003630' => 'cla', 'ClCG05G000510' => 'cla', 'ClCG05G002300' => 'cla', 'ClCG08G007650' => 'cla', 'ClCG10G021250' => 'cla', 'COL.COLO4_06218' => 'col', 'COL.COLO4_12538' => 'col', 'COL.COLO4_14775' => 'col', 'COL.COLO4_23875' => 'col', 'Cpa.g.sc141.16' => 'cpa', 'Cpa.g.sc169.16' => 'cpa', 'Cpa.g.sc244.4' => 'cpa', 'Cpa.g.sc244.5' => 'cpa', 'Cpa.g.sc29.87' => 'cpa', 'Cpa.g.sc53.115' => 'cpa', 'Cre03.g207502' => 'cre', 'Cre06.g277000' => 'cre', 'Cre09.g394050' => 'cre', 'CsaV3_3G007680' => 'csa', 'CsaV3_3G009710' => 'csa', 'CsaV3_3G034790' => 'csa', 'CsaV3_5G003750' => 'csa', 'CsaV3_6G036620' => 'csa', 'CSS0002288' => 'camsi', 'CSS0011250' => 'camsi', 'CSS0021619' => 'camsi', 'CSS0046701' => 'camsi', 'DCAR_006420' => 'dca', 'DCAR_006865' => 'dca', 'DCAR_008558' => 'dca', 'DCAR_028754' => 'dca', 'DCAR_028755' => 'dca', 'Dinv31218' => 'din', 'Dinv32371' => 'din', 'Dinv34250' => 'din', 'Dinv37156' => 'din', 'Dinv43704' => 'din', 'Duzib093G1811' => 'dzi', 'Duzib106G1622' => 'dzi', 'Duzib114G0504' => 'dzi', 'Duzib128G0338' => 'dzi', 'Duzib128G1577' => 'dzi', 'Duzib133G0104' => 'dzi', 'Duzib133G1080' => 'dzi', 'Duzib138G0324' => 'dzi', 'Duzib138G0394' => 'dzi', 'Duzib205G0122' => 'dzi', 'Duzib268G1020' => 'dzi', 'Duzib268G1359' => 'dzi', 'ECA232G3929' => 'eca', 'ECA236G2210' => 'eca', 'ECA236G2287' => 'eca', 'ECA240G4568' => 'eca', 'ECA247G0894' => 'eca', 'EL10Ac1g00200' => 'bvu', 'EL10Ac1g00886' => 'bvu', 'EL10As1g23091' => 'bvu', 'EL10As1g23092' => 'bvu', 'Eucgr.A01284' => 'egr', 'Eucgr.A01285' => 'egr', 'Eucgr.D02456' => 'egr', 'Eucgr.E00018' => 'egr', 'Eucgr.E01439' => 'egr', 'Eucgr.G02859' => 'egr', 'FAN01G0168' => 'fan', 'FAN01G0453' => 'fan', 'FAN01G2761' => 'fan', 'FAN02G1239' => 'fan', 'FAN03G0645' => 'fan', 'FAN03G2707' => 'fan', 'FAN03G2978' => 'fan', 'FAN04G0227' => 'fan', 'FAN06G0091' => 'fan', 'FAN06G1418' => 'fan', 'FAN06G1512' => 'fan', 'FAN06G1986' => 'fan', 'FAN06G2905' => 'fan', 'FAN06G4325' => 'fan', 'FAN08G0033' => 'fan', 'FAN09G0642' => 'fan', 'FAN10G1763' => 'fan', 'FAN10G2026' => 'fan', 'FAN10G2513' => 'fan', 'FAN10G3402' => 'fan', 'FAN10G3564' => 'fan', 'FAN10G3987' => 'fan', 'FAN13G1490' => 'fan', 'FAN14G5857' => 'fan', 'FAN18G1188' => 'fan', 'FvH4_5g00750' => 'fve', 'FvH4_6g13410' => 'fve', 'FvH4_7g11740' => 'fve', 'FvH4_7g17410' => 'fve', 'FvH4_7g18860' => 'fve', 'Glyma.01G099100' => 'gma', 'Glyma.01G142300' => 'gma', 'Glyma.03G025500' => 'gma', 'Glyma.03G069700' => 'gma', 'Glyma.03G260000' => 'gma', 'Glyma.09G269800' => 'gma', 'Glyma.10G208700' => 'gma', 'Glyma.18G220400' => 'gma', 'Glyma.20G182000' => 'gma', 'Gohir.A01G221726' => 'ghi', 'Gohir.A07G134600' => 'ghi', 'Gohir.A07G146000' => 'ghi', 'Gohir.A08G173900' => 'ghi', 'Gohir.A09G194900' => 'ghi', 'Gohir.A10G204100' => 'ghi', 'Gohir.A11G080600' => 'ghi', 'Gohir.A11G327500' => 'ghi', 'Gohir.A12G101800' => 'ghi', 'Gohir.D01G211200' => 'ghi', 'Gohir.D07G139200' => 'ghi', 'Gohir.D07G152100' => 'ghi', 'Gohir.D08G192600' => 'ghi', 'Gohir.D09G189200' => 'ghi', 'Gohir.D10G212000' => 'ghi', 'Gohir.D11G085200' => 'ghi', 'Gohir.D11G346400' => 'ghi', 'Gohir.D12G104800' => 'ghi', 'Gorai.001G151300' => 'gra', 'Gorai.001G174100' => 'gra', 'Gorai.002G257000' => 'gra', 'Gorai.004G202600' => 'gra', 'Gorai.007G090900' => 'gra', 'Gorai.007G376700' => 'gra', 'Gorai.008G114100' => 'gra', 'Gorai.011G237900' => 'gra', 'GSVIVG01005450001' => 'vvi', 'GSVIVG01016232001' => 'vvi', 'GSVIVG01026157001' => 'vvi', 'GSVIVG01027419001' => 'vvi', 'GSVIVG01027631001' => 'vvi', 'GSVIVG01034143001' => 'vvi', 'HanXRQChr03g0093921' => 'han', 'HanXRQChr04g0120001' => 'han', 'HanXRQChr04g0122561' => 'han', 'HanXRQChr09g0246851' => 'han', 'HanXRQChr10g0293311' => 'han', 'HanXRQChr13g0425231' => 'han', 'HanXRQChr16g0532571' => 'han', 'Haze_09050' => 'cav', 'Haze_15715' => 'cav', 'Haze_15716' => 'cav', 'Haze_16803' => 'cav', 'Haze_16850' => 'cav', 'Hma1.2p1_0301F.1_g118655' => 'hma', 'Hma1.2p1_0309F.1_g120590' => 'hma', 'Hma1.2p1_0936F.1_g238900' => 'hma', 'Hma1.2p1_3552F.1_g336740' => 'hma', 'HPP92_003520' => 'vpl', 'HPP92_006628' => 'vpl', 'HPP92_006645' => 'vpl', 'HPP92_014669' => 'vpl', 'HPP92_015077' => 'vpl', 'Hund16742' => 'sun', 'Hund17022' => 'sun', 'Lalb_Chr02g0152131' => 'lal', 'Lalb_Chr05g0225371' => 'lal', 'Lalb_Chr07g0189841' => 'lal', 'Lalb_Chr07g0192961' => 'lal', 'Lalb_Chr12g0208221' => 'lal', 'Lalb_Chr13g0291211' => 'lal', 'Lalb_Chr13g0291781' => 'lal', 'Lalb_Chr18g0044651' => 'lal', 'Lalb_Chr21g0313731' => 'lal', 'Lj1g0022533' => 'lja', 'Lj2A18T50' => 'lonja', 'Lj2A92G93' => 'lonja', 'Lj3A965T73' => 'lonja', 'Lj3g0000673' => 'lja', 'Lj3g0002666' => 'lja', 'Lj4g0016985' => 'lja', 'Lj5g0003625' => 'lja', 'Lj7A529G36' => 'lonja', 'Lj9A569T49' => 'lonja', 'Lj9A604T63' => 'lonja', 'Lsat_1_v5_gn_3_132060' => 'lsa', 'Lsat_1_v5_gn_4_68941' => 'lsa', 'Lsat_1_v5_gn_5_95580' => 'lsa', 'Lsat_1_v5_gn_7_161' => 'lsa', 'Lsat_1_v5_gn_7_7041' => 'lsa', 'Lsat_1_v5_gn_9_33481' => 'lsa', 'Lsat_1_v5_gn_9_68260' => 'lsa', 'Manes.01G073100' => 'mes', 'Manes.01G266300' => 'mes', 'Manes.02G033300' => 'mes', 'Manes.05G017900' => 'mes', 'Manes.05G046100' => 'mes', 'Manes.08G080900' => 'mes', 'Manes.10G049400' => 'mes', 'Mapoly0009s0186' => 'mpo', 'Mapoly0036s0118' => 'mpo', 'Mapoly0101s0046' => 'mpo', 'MBI04_g30218_MAGBIO' => 'mbi', 'MBI04_g35564_MAGBIO' => 'mbi', 'MBI12_g34011_MAGBIO' => 'mbi', 'MBI14_g04655_MAGBIO' => 'mbi', 'MCO07G653' => 'mco', 'MCO10G173' => 'mco', 'MD01G1087100' => 'mdo', 'MD01G1104200' => 'mdo', 'MD02G1205100' => 'mdo', 'MD04G1079200' => 'mdo', 'MD04G1131400' => 'mdo', 'MD07G1121600' => 'mdo', 'MD07G1157300' => 'mdo', 'MD07G1171000' => 'mdo', 'MD12G1144500' => 'mdo', 'Medtr1g094610' => 'mtr', 'Medtr4g021795' => 'mtr', 'Medtr4g023760' => 'mtr', 'Medtr7g118050' => 'mtr', 'MELO3C005582.2' => 'cme', 'MELO3C005989.2' => 'cme', 'MELO3C006192.2' => 'cme', 'MELO3C009248.2' => 'cme', 'MELO3C019817.2' => 'cme', 'Migut.B01625' => 'egut', 'Migut.B01915' => 'egut', 'Migut.F01721' => 'egut', 'Migut.J00314' => 'egut', 'MSTRG.20742' => 'ama', 'MSTRG.8134' => 'ama', 'Nitab4.5_0000096g0010' => 'nta', 'Nitab4.5_0000202g0030' => 'nta', 'Nitab4.5_0000216g0370' => 'nta', 'Nitab4.5_0000457g0230' => 'nta', 'Nitab4.5_0001702g0170' => 'nta', 'Nitab4.5_0003607g0010' => 'nta', 'Nitab4.5_0004917g0020' => 'nta', 'Nitab4.5_0007059g0010' => 'nta', 'Nitab4.5_0007184g0010' => 'nta', 'Nitab4.5_0007346g0020' => 'nta', 'Nn1g00410' => 'nnu', 'Nn1g01252' => 'nnu', 'Nn2g11168' => 'nnu', 'Nn2g13403' => 'nnu', 'Nn2g13760' => 'nnu', 'Nn4g26380' => 'nnu', 'Oeu000806.2' => 'oeu', 'Oeu005788.1' => 'oeu', 'Oeu006900.3' => 'oeu', 'Oeu007797.1' => 'oeu', 'Oeu011932.1' => 'oeu', 'Oeu022739.1' => 'oeu', 'Oeu037918.1' => 'oeu', 'Oeu055490.2' => 'oeu', 'Os01g0844400' => 'osa', 'Os02g0819100' => 'osa', 'Os03g0804300' => 'osa', 'Os05g0458000' => 'osa', 'Os07g0467800' => 'osa', 'Os12g0602200' => 'osa', 'Peaxi162Scf00013g03444' => 'pax', 'Peaxi162Scf00094g01120' => 'pax', 'Peaxi162Scf00191g01211' => 'pax', 'Peaxi162Scf00238g01110' => 'pax', 'Peaxi162Scf00330g00719' => 'pax', 'Peaxi162Scf00627g00018' => 'pax', 'PGR031G2686' => 'pgr', 'PGR042G0809' => 'pgr', 'PGR142G0193' => 'pgr', 'PGSC0003DMG400011066' => 'stu', 'PGSC0003DMG400012041' => 'stu', 'PGSC0003DMG400013678' => 'stu', 'PGSC0003DMG400023477' => 'stu', 'PGSC0003DMG400025956' => 'stu', 'PGSC0003DMG401019151' => 'stu', 'Phvul.006G116400' => 'pvu', 'Phvul.007G097300' => 'pvu', 'Phvul.010G015000' => 'pvu', 'Phvul.010G083900' => 'pvu', 'Potri.001G117100' => 'ptr', 'Potri.002G147300' => 'ptr', 'Potri.003G115600' => 'ptr', 'Potri.006G087400' => 'ptr', 'Potri.010G226100' => 'ptr', 'Potri.014G069200' => 'ptr', 'Potri.014G104000' => 'ptr', 'Potri.016G100200' => 'ptr', 'Pp3c10_20450' => 'ppa', 'Pp3c1_42400' => 'ppa', 'Pp3c3_24390' => 'ppa', 'Pp3c3_2860' => 'ppa', 'PRCOL_00003193' => 'pco', 'Prupe.2G144500' => 'ppe', 'Prupe.2G195700' => 'ppe', 'Prupe.2G209800' => 'ppe', 'Prupe.5G080000' => 'ppe', 'Prupe.6G257900' => 'ppe', 'Psat3g001160' => 'psa', 'Psat6g181880' => 'psa', 'Psat7g233720' => 'psa', 'PSO063G7587' => 'pso', 'PSO339G2145' => 'pso', 'PSO339G3369' => 'pso', 'PSO478G2747' => 'pso', 'PSO513G0140' => 'pso', 'PSO782G1614' => 'pso', 'PSO782G4889' => 'pso', 'PSO782G5485' => 'pso', 'PSO801G0241' => 'pso', 'QL07p048854' => 'qlo', 'QL08p046745' => 'qlo', 'QL08p052606' => 'qlo', 'QL08p053414' => 'qlo', 'QL08p054868' => 'qlo', 'RcHm_v2.0_Chr1g0350251' => 'rch', 'RcHm_v2.0_Chr1g0360851' => 'rch', 'RcHm_v2.0_Chr1g0362791' => 'rch', 'RcHm_v2.0_Chr3g0466281' => 'rch', 'RcHm_v2.0_Chr7g0201481' => 'rch', 'Rhsim01G0148600' => 'rsi', 'Rhsim05G0194400' => 'rsi', 'Rhsim07G0000700' => 'rsi', 'Rhsim07G0000800' => 'rsi', 'Rhsim07G0027900' => 'rsi', 'Rhsim09G0149500' => 'rsi', 'RhsimUnG0186900' => 'rsi', 'Sabra01G0089900' => 'sbr', 'Sabra02G0114700' => 'sbr', 'Sabra02G0116300' => 'sbr', 'Sabra03G0080100' => 'sbr', 'Sabra08G0024300' => 'sbr', 'Sabra10G0174300' => 'sbr', 'Sabra14G0048900' => 'sbr', 'Sabra14G0076500' => 'sbr', 'SalBow5G2513' => 'sbo', 'Sc01g0002300' => 'sci', 'Sc01g0004450' => 'sci', 'Sc06g0001680' => 'sci', 'Sc23g0003580' => 'sci', 'Sed0000913' => 'sed', 'Sed0001655' => 'sed', 'Sed0007745' => 'sed', 'Sed0010951' => 'sed', 'Sed0017599' => 'sed', 'Sed0021405' => 'sed', 'Sed0022810' => 'sed', 'SEGI_07099' => 'sgi', 'SEGI_11931' => 'sgi', 'SEGI_13187' => 'sgi', 'SEGI_29958' => 'sgi', 'SEGI_36351' => 'sgi', 'SGA_v2.0_scaffold126G33770' => 'sas', 'SGA_v2.0_scaffold153G37003' => 'sas', 'SGA_v2.0_scaffold2G01359' => 'sas', 'SGA_v2.0_scaffold5G03064' => 'sas', 'SGA_v2.0_scaffold95G28903' => 'sas', 'SHI12701' => 'shi', 'SHI26410' => 'shi', 'SHI38997' => 'shi', 'SHI53759' => 'shi', 'SHI53886' => 'shi', 'SHI54714' => 'shi', 'SMO011G0041' => 'smo', 'SMO146G0251' => 'smo', 'SMO160G0004' => 'smo', 'SMO174G0057' => 'smo', 'SMO244G0089' => 'smo', 'SMO296G0011' => 'smo', 'Solyc01g091280.3' => 'sly', 'Solyc05g047610.3' => 'sly', 'Solyc05g047640.3' => 'sly', 'Solyc05g055630.3' => 'sly', 'Solyc10g018160.2' => 'sly', 'Solyc10g084820.2' => 'sly', 'Solyc10g086565.2' => 'sly', 'Sopen01g037030' => 'spe', 'Sopen05g027920' => 'spe', 'Sopen05g034070' => 'spe', 'Sopen10g007260' => 'spe', 'Sopen10g034260' => 'spe', 'Sopen10g035950' => 'spe', 'Sp3g07710' => 'spa', 'Sp4g27420' => 'spa', 'Sp5g02450' => 'spa', 'Sp6g01280' => 'spa', 'Sp6g38480' => 'spa', 'Sp7g20780' => 'spa', 'TAR374G1413' => 'tar', 'TAR623G1777' => 'tar', 'TAR629G2370' => 'tar', 'TAR633G1759' => 'tar', 'TAR636G3387' => 'tar', 'THA.LOC104802447' => 'tha', 'THA.LOC104813916' => 'tha', 'THA.LOC104816423' => 'tha', 'THA.LOC104817246' => 'tha', 'THA.LOC104825895' => 'tha', 'Thecc.01G335200' => 'tca', 'Thecc.01G377400' => 'tca', 'Thecc.03G262200' => 'tca', 'Thecc.05G036800' => 'tca', 'Thecc.10G080500' => 'tca', 'Thecc.10G080800' => 'tca', 'Thhalv10001560m.g' => 'esa', 'Thhalv10006120m.g' => 'esa', 'Thhalv10014375m.g' => 'esa', 'Thhalv10021264m.g' => 'esa', 'Thhalv10028856m.g' => 'esa', 'TPR.G1914' => 'tpr', 'TPR.G4757' => 'tpr', 'TPR.G5595' => 'tpr', 'TWI14G0952' => 'twi', 'TWI14G1307' => 'twi', 'TWI38G2143' => 'twi', 'TWI59G0826' => 'twi', 'TWI77G0527' => 'twi', 'TWI81G0150' => 'twi', 'unitig_21.g21018' => 'ugi', 'unitig_26.g9725' => 'ugi', 'unitig_744.g24653' => 'ugi', 'unitig_749.g13778' => 'ugi', 'unitig_899.g15035' => 'ugi', 'vmacro04296' => 'vma', 'vmacro04852' => 'vma', 'vmacro13404' => 'vma', 'vmacro20169' => 'vma', 'vmacro21014' => 'vma', 'VMungo0331G0237' => 'vmu', 'VMungo0331G0706' => 'vmu', 'VMungo0331G1361' => 'vmu', 'VMungo0331G1489' => 'vmu', 'VMungo0540G1037' => 'vmu', 'VMungo0720G2487' => 'vmu', 'VMungo0720G2721' => 'vmu', 'Zm00001eb086860' => 'zma', 'Zm00001eb104760' => 'zma', 'Zm00001eb148220' => 'zma', 'Zm00001eb259030' => 'zma', 'Zm00001eb289590' => 'zma', 'Zm00001eb420150' => 'zma' ), 'gf_id' => 'HOM05D000968', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000968' ), 'data_identifier' => 'HOM05D000968', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000968', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p31690' => 'bna', 'A03p36040' => 'bna', 'A03p53730' => 'bna', 'A04p01410' => 'bna', 'A05p05420' => 'bna', 'A05p39630' => 'bna', 'A05p39640' => 'bna', 'A09p00970' => 'bna', 'A09p53060' => 'bna', 'A10p31890' => 'bna', 'Aa31LG10G15040' => 'aar', 'Aa31LG1G21090' => 'aar', 'Aa31LG1G26900' => 'aar', 'Aa31LG3G1820' => 'aar', 'Aa31LG5G1100' => 'aar', 'Aa31LG6G4740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2265' => 'aag', 'Actinidia07998' => 'ach', 'Actinidia11266' => 'ach', 'Actinidia12682' => 'ach', 'Actinidia26479' => 'ach', 'Actinidia31406' => 'ach', 'Actinidia32437' => 'ach', 'Actinidia38862' => 'ach', 'Ah.05g174230' => 'amhyb', 'Ah.05g179070' => 'amhyb', 'Ah.05g179090' => 'amhyb', 'Ah.12g059950' => 'amhyb', 'AL3G20480' => 'aly', 'AL4G44520' => 'aly', 'AL5G43110' => 'aly', 'AL6G13890' => 'aly', 'AL6G52620' => 'aly', 'AL7G30830' => 'aly', 'Aqoxy1G00899' => 'aox', 'Aqoxy5G04333' => 'aox', 'Aqoxy7G00641' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3IZ0NN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4EF6AW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W9P8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79GA3M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C43NQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFCU6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G95YVJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCHK29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LU1UG8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX91RN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGB4B1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8DA0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9H7JI' => 'arhy', 'AT3G09320' => 'ath', 'AT3G60800' => 'ath', 'AT4G00840' => 'ath', 'AT4G22750' => 'ath', 'AT5G04270' => 'ath', 'ATR0090G003' => 'atr', 'ATR0559G349' => 'atr', 'ATR0680G261' => 'atr', 'ATR0810G048' => 'atr', 'Atru.chr12.831' => 'acertr', 'Atru.chr5.303' => 'acertr', 'Atru.chr5.748' => 'acertr', 'Atru.chr8.1999' => 'acertr', 'Atru.chr9.1436' => 'acertr', 'AUR62004211' => 'cqu', 'AUR62004548' => 'cqu', 'AUR62013637' => 'cqu', 'AUR62022662' => 'cqu', 'AUR62025777' => 'cqu', 'AUR62042386' => 'cqu', 'BcaB01g02310' => 'bca', 'BcaB01g06062' => 'bca', 'BcaB02g08975' => 'bca', 'BcaB02g08980' => 'bca', 'BcaC01g04228' => 'bca', 'BcaC01g06830' => 'bca', 'BcaC02g10186' => 'bca', 'BcaC02g12214' => 'bca', 'BcaC04g24101' => 'bca', 'BcaC05g29520' => 'bca', 'BcaC05g29661' => 'bca', 'BcaC06g32130' => 'bca', 'BcaC06g32131' => 'bca', 'BcaC07g40601' => 'bca', 'BcaC07g42641' => 'bca', 'BcaNung01038' => 'bca', 'BcaNung01676' => 'bca', 'BcaNung02480' => 'bca', 'BcaNung07376' => 'bca', 'BolC3t16146H' => 'bol', 'BolC3t16637H' => 'bol', 'BolC4t22257H' => 'bol', 'BolC4t24728H' => 'bol', 'BolC5t34517H' => 'bol', 'BolC7t45703H' => 'bol', 'BolC8t51166H' => 'bol', 'BolC9t53038H' => 'bol', 'BolC9t60000H' => 'bol', 'BraA01t01345Z' => 'bra', 'BraA01t01346Z' => 'bra', 'BraA01t01348Z' => 'bra', 'BraA03t12347Z' => 'bra', 'BraA03t12775Z' => 'bra', 'BraA03t14439Z' => 'bra', 'BraA04t15860Z' => 'bra', 'BraA05t19511Z' => 'bra', 'BraA05t22746Z' => 'bra', 'BraA09t35767Z' => 'bra', 'BraA09t40732Z' => 'bra', 'BraA10t45233Z' => 'bra', 'C03p38720' => 'bna', 'C03p43680' => 'bna', 'C04p06350' => 'bna', 'C04p31800' => 'bna', 'C05p58680' => 'bna', 'C07p52110' => 'bna', 'C08p35760' => 'bna', 'C09p01050' => 'bna', 'C09p72600' => 'bna', 'CAN.G106.2' => 'can', 'CAN.G1482.1' => 'can', 'CAN.G324.12' => 'can', 'CAN.G388.20' => 'can', 'CAN.G412.7' => 'can', 'CAN.G694.32' => 'can', 'CAN.G92.12' => 'can', 'CANSAT11G2353' => 'cansat', 'CANSAT21G1398' => 'cansat', 'CANSAT56G2456' => 'cansat', 'CANSAT56G3031' => 'cansat', 'CANSAT56G4539' => 'cansat', 'CARHR083680' => 'chi', 'CARHR171190' => 'chi', 'CARHR209010' => 'chi', 'CARHR229680' => 'chi', 'CARHR249490' => 'chi', 'Carub.0003s0844' => 'cru', 'Carub.0005s2755' => 'cru', 'Carub.0006s0322' => 'cru', 'Carub.0006s3586' => 'cru', 'Carub.0007s1855' => 'cru', 'Ca_07808_v3' => 'car', 'Ca_09535_v3' => 'car', 'Ca_10548_v3' => 'car', 'Ca_19913_v3' => 'car', 'Ca_19916_v3' => 'car', 'Ca_19975_v3' => 'car', 'CBR_g22876' => 'cbr', 'CBR_g22879' => 'cbr', 'CBR_g38491' => 'cbr', 'CBR_g54185' => 'cbr', 'CBR_g54190' => 'cbr', 'Cc02_g11020' => 'ccan', 'Cc02_g23920' => 'ccan', 'Cc02_g39860' => 'ccan', 'Cc02_g39870' => 'ccan', 'Cc03_g06760' => 'ccan', 'Cc06_g02450' => 'ccan', 'Cc09_g09450' => 'ccan', 'CDE02G1959' => 'cde', 'CDE04G0600' => 'cde', 'CDE07G1996' => 'cde', 'CDE07G2078' => 'cde', 'CDE11G0611' => 'cde', 'Cfa001683' => 'cfa', 'Cfa001734' => 'cfa', 'Cfa001737' => 'cfa', 'Cfa003751' => 'cfa', 'Cfa012019' => 'cfa', 'Cfa017353' => 'cfa', 'Cfa017732' => 'cfa', 'Cfa022464' => 'cfa', 'Ciclev10012400m.g' => 'ccl', 'Ciclev10021242m.g' => 'ccl', 'Ciclev10021302m.g' => 'ccl', 'Ciclev10021463m.g' => 'ccl', 'Ciclev10032359m.g' => 'ccl', 'CiPaw.01G081000' => 'cil', 'CiPaw.01G262500' => 'cil', 'CiPaw.01G269800' => 'cil', 'CiPaw.02G168400' => 'cil', 'CiPaw.05G119500' => 'cil', 'CiPaw.11G147300' => 'cil', 'ClCG01G003630' => 'cla', 'ClCG05G000510' => 'cla', 'ClCG05G002300' => 'cla', 'ClCG08G007650' => 'cla', 'ClCG10G021250' => 'cla', 'COL.COLO4_06218' => 'col', 'COL.COLO4_12538' => 'col', 'COL.COLO4_14775' => 'col', 'COL.COLO4_23875' => 'col', 'Cpa.g.sc141.16' => 'cpa', 'Cpa.g.sc169.16' => 'cpa', 'Cpa.g.sc244.4' => 'cpa', 'Cpa.g.sc244.5' => 'cpa', 'Cpa.g.sc29.87' => 'cpa', 'Cpa.g.sc53.115' => 'cpa', 'Cre03.g207502' => 'cre', 'Cre06.g277000' => 'cre', 'Cre09.g394050' => 'cre', 'CsaV3_3G007680' => 'csa', 'CsaV3_3G009710' => 'csa', 'CsaV3_3G034790' => 'csa', 'CsaV3_5G003750' => 'csa', 'CsaV3_6G036620' => 'csa', 'CSS0002288' => 'camsi', 'CSS0011250' => 'camsi', 'CSS0021619' => 'camsi', 'CSS0046701' => 'camsi', 'DCAR_006420' => 'dca', 'DCAR_006865' => 'dca', 'DCAR_008558' => 'dca', 'DCAR_028754' => 'dca', 'DCAR_028755' => 'dca', 'Dinv31218' => 'din', 'Dinv32371' => 'din', 'Dinv34250' => 'din', 'Dinv37156' => 'din', 'Dinv43704' => 'din', 'Duzib093G1811' => 'dzi', 'Duzib106G1622' => 'dzi', 'Duzib114G0504' => 'dzi', 'Duzib128G0338' => 'dzi', 'Duzib128G1577' => 'dzi', 'Duzib133G0104' => 'dzi', 'Duzib133G1080' => 'dzi', 'Duzib138G0324' => 'dzi', 'Duzib138G0394' => 'dzi', 'Duzib205G0122' => 'dzi', 'Duzib268G1020' => 'dzi', 'Duzib268G1359' => 'dzi', 'ECA232G3929' => 'eca', 'ECA236G2210' => 'eca', 'ECA236G2287' => 'eca', 'ECA240G4568' => 'eca', 'ECA247G0894' => 'eca', 'EL10Ac1g00200' => 'bvu', 'EL10Ac1g00886' => 'bvu', 'EL10As1g23091' => 'bvu', 'EL10As1g23092' => 'bvu', 'Eucgr.A01284' => 'egr', 'Eucgr.A01285' => 'egr', 'Eucgr.D02456' => 'egr', 'Eucgr.E00018' => 'egr', 'Eucgr.E01439' => 'egr', 'Eucgr.G02859' => 'egr', 'FAN01G0168' => 'fan', 'FAN01G0453' => 'fan', 'FAN01G2761' => 'fan', 'FAN02G1239' => 'fan', 'FAN03G0645' => 'fan', 'FAN03G2707' => 'fan', 'FAN03G2978' => 'fan', 'FAN04G0227' => 'fan', 'FAN06G0091' => 'fan', 'FAN06G1418' => 'fan', 'FAN06G1512' => 'fan', 'FAN06G1986' => 'fan', 'FAN06G2905' => 'fan', 'FAN06G4325' => 'fan', 'FAN08G0033' => 'fan', 'FAN09G0642' => 'fan', 'FAN10G1763' => 'fan', 'FAN10G2026' => 'fan', 'FAN10G2513' => 'fan', 'FAN10G3402' => 'fan', 'FAN10G3564' => 'fan', 'FAN10G3987' => 'fan', 'FAN13G1490' => 'fan', 'FAN14G5857' => 'fan', 'FAN18G1188' => 'fan', 'FvH4_5g00750' => 'fve', 'FvH4_6g13410' => 'fve', 'FvH4_7g11740' => 'fve', 'FvH4_7g17410' => 'fve', 'FvH4_7g18860' => 'fve', 'Glyma.01G099100' => 'gma', 'Glyma.01G142300' => 'gma', 'Glyma.03G025500' => 'gma', 'Glyma.03G069700' => 'gma', 'Glyma.03G260000' => 'gma', 'Glyma.09G269800' => 'gma', 'Glyma.10G208700' => 'gma', 'Glyma.18G220400' => 'gma', 'Glyma.20G182000' => 'gma', 'Gohir.A01G221726' => 'ghi', 'Gohir.A07G134600' => 'ghi', 'Gohir.A07G146000' => 'ghi', 'Gohir.A08G173900' => 'ghi', 'Gohir.A09G194900' => 'ghi', 'Gohir.A10G204100' => 'ghi', 'Gohir.A11G080600' => 'ghi', 'Gohir.A11G327500' => 'ghi', 'Gohir.A12G101800' => 'ghi', 'Gohir.D01G211200' => 'ghi', 'Gohir.D07G139200' => 'ghi', 'Gohir.D07G152100' => 'ghi', 'Gohir.D08G192600' => 'ghi', 'Gohir.D09G189200' => 'ghi', 'Gohir.D10G212000' => 'ghi', 'Gohir.D11G085200' => 'ghi', 'Gohir.D11G346400' => 'ghi', 'Gohir.D12G104800' => 'ghi', 'Gorai.001G151300' => 'gra', 'Gorai.001G174100' => 'gra', 'Gorai.002G257000' => 'gra', 'Gorai.004G202600' => 'gra', 'Gorai.007G090900' => 'gra', 'Gorai.007G376700' => 'gra', 'Gorai.008G114100' => 'gra', 'Gorai.011G237900' => 'gra', 'GSVIVG01005450001' => 'vvi', 'GSVIVG01016232001' => 'vvi', 'GSVIVG01026157001' => 'vvi', 'GSVIVG01027419001' => 'vvi', 'GSVIVG01027631001' => 'vvi', 'GSVIVG01034143001' => 'vvi', 'HanXRQChr03g0093921' => 'han', 'HanXRQChr04g0120001' => 'han', 'HanXRQChr04g0122561' => 'han', 'HanXRQChr09g0246851' => 'han', 'HanXRQChr10g0293311' => 'han', 'HanXRQChr13g0425231' => 'han', 'HanXRQChr16g0532571' => 'han', 'Haze_09050' => 'cav', 'Haze_15715' => 'cav', 'Haze_15716' => 'cav', 'Haze_16803' => 'cav', 'Haze_16850' => 'cav', 'Hma1.2p1_0301F.1_g118655' => 'hma', 'Hma1.2p1_0309F.1_g120590' => 'hma', 'Hma1.2p1_0936F.1_g238900' => 'hma', 'Hma1.2p1_3552F.1_g336740' => 'hma', 'HPP92_003520' => 'vpl', 'HPP92_006628' => 'vpl', 'HPP92_006645' => 'vpl', 'HPP92_014669' => 'vpl', 'HPP92_015077' => 'vpl', 'Hund16742' => 'sun', 'Hund17022' => 'sun', 'Lalb_Chr02g0152131' => 'lal', 'Lalb_Chr05g0225371' => 'lal', 'Lalb_Chr07g0189841' => 'lal', 'Lalb_Chr07g0192961' => 'lal', 'Lalb_Chr12g0208221' => 'lal', 'Lalb_Chr13g0291211' => 'lal', 'Lalb_Chr13g0291781' => 'lal', 'Lalb_Chr18g0044651' => 'lal', 'Lalb_Chr21g0313731' => 'lal', 'Lj1g0022533' => 'lja', 'Lj2A18T50' => 'lonja', 'Lj2A92G93' => 'lonja', 'Lj3A965T73' => 'lonja', 'Lj3g0000673' => 'lja', 'Lj3g0002666' => 'lja', 'Lj4g0016985' => 'lja', 'Lj5g0003625' => 'lja', 'Lj7A529G36' => 'lonja', 'Lj9A569T49' => 'lonja', 'Lj9A604T63' => 'lonja', 'Lsat_1_v5_gn_3_132060' => 'lsa', 'Lsat_1_v5_gn_4_68941' => 'lsa', 'Lsat_1_v5_gn_5_95580' => 'lsa', 'Lsat_1_v5_gn_7_161' => 'lsa', 'Lsat_1_v5_gn_7_7041' => 'lsa', 'Lsat_1_v5_gn_9_33481' => 'lsa', 'Lsat_1_v5_gn_9_68260' => 'lsa', 'Manes.01G073100' => 'mes', 'Manes.01G266300' => 'mes', 'Manes.02G033300' => 'mes', 'Manes.05G017900' => 'mes', 'Manes.05G046100' => 'mes', 'Manes.08G080900' => 'mes', 'Manes.10G049400' => 'mes', 'Mapoly0009s0186' => 'mpo', 'Mapoly0036s0118' => 'mpo', 'Mapoly0101s0046' => 'mpo', 'MBI04_g30218_MAGBIO' => 'mbi', 'MBI04_g35564_MAGBIO' => 'mbi', 'MBI12_g34011_MAGBIO' => 'mbi', 'MBI14_g04655_MAGBIO' => 'mbi', 'MCO07G653' => 'mco', 'MCO10G173' => 'mco', 'MD01G1087100' => 'mdo', 'MD01G1104200' => 'mdo', 'MD02G1205100' => 'mdo', 'MD04G1079200' => 'mdo', 'MD04G1131400' => 'mdo', 'MD07G1121600' => 'mdo', 'MD07G1157300' => 'mdo', 'MD07G1171000' => 'mdo', 'MD12G1144500' => 'mdo', 'Medtr1g094610' => 'mtr', 'Medtr4g021795' => 'mtr', 'Medtr4g023760' => 'mtr', 'Medtr7g118050' => 'mtr', 'MELO3C005582.2' => 'cme', 'MELO3C005989.2' => 'cme', 'MELO3C006192.2' => 'cme', 'MELO3C009248.2' => 'cme', 'MELO3C019817.2' => 'cme', 'Migut.B01625' => 'egut', 'Migut.B01915' => 'egut', 'Migut.F01721' => 'egut', 'Migut.J00314' => 'egut', 'MSTRG.20742' => 'ama', 'MSTRG.8134' => 'ama', 'Nitab4.5_0000096g0010' => 'nta', 'Nitab4.5_0000202g0030' => 'nta', 'Nitab4.5_0000216g0370' => 'nta', 'Nitab4.5_0000457g0230' => 'nta', 'Nitab4.5_0001702g0170' => 'nta', 'Nitab4.5_0003607g0010' => 'nta', 'Nitab4.5_0004917g0020' => 'nta', 'Nitab4.5_0007059g0010' => 'nta', 'Nitab4.5_0007184g0010' => 'nta', 'Nitab4.5_0007346g0020' => 'nta', 'Nn1g00410' => 'nnu', 'Nn1g01252' => 'nnu', 'Nn2g11168' => 'nnu', 'Nn2g13403' => 'nnu', 'Nn2g13760' => 'nnu', 'Nn4g26380' => 'nnu', 'Oeu000806.2' => 'oeu', 'Oeu005788.1' => 'oeu', 'Oeu006900.3' => 'oeu', 'Oeu007797.1' => 'oeu', 'Oeu011932.1' => 'oeu', 'Oeu022739.1' => 'oeu', 'Oeu037918.1' => 'oeu', 'Oeu055490.2' => 'oeu', 'Os01g0844400' => 'osa', 'Os02g0819100' => 'osa', 'Os03g0804300' => 'osa', 'Os05g0458000' => 'osa', 'Os07g0467800' => 'osa', 'Os12g0602200' => 'osa', 'Peaxi162Scf00013g03444' => 'pax', 'Peaxi162Scf00094g01120' => 'pax', 'Peaxi162Scf00191g01211' => 'pax', 'Peaxi162Scf00238g01110' => 'pax', 'Peaxi162Scf00330g00719' => 'pax', 'Peaxi162Scf00627g00018' => 'pax', 'PGR031G2686' => 'pgr', 'PGR042G0809' => 'pgr', 'PGR142G0193' => 'pgr', 'PGSC0003DMG400011066' => 'stu', 'PGSC0003DMG400012041' => 'stu', 'PGSC0003DMG400013678' => 'stu', 'PGSC0003DMG400023477' => 'stu', 'PGSC0003DMG400025956' => 'stu', 'PGSC0003DMG401019151' => 'stu', 'Phvul.006G116400' => 'pvu', 'Phvul.007G097300' => 'pvu', 'Phvul.010G015000' => 'pvu', 'Phvul.010G083900' => 'pvu', 'Potri.001G117100' => 'ptr', 'Potri.002G147300' => 'ptr', 'Potri.003G115600' => 'ptr', 'Potri.006G087400' => 'ptr', 'Potri.010G226100' => 'ptr', 'Potri.014G069200' => 'ptr', 'Potri.014G104000' => 'ptr', 'Potri.016G100200' => 'ptr', 'Pp3c10_20450' => 'ppa', 'Pp3c1_42400' => 'ppa', 'Pp3c3_24390' => 'ppa', 'Pp3c3_2860' => 'ppa', 'PRCOL_00003193' => 'pco', 'Prupe.2G144500' => 'ppe', 'Prupe.2G195700' => 'ppe', 'Prupe.2G209800' => 'ppe', 'Prupe.5G080000' => 'ppe', 'Prupe.6G257900' => 'ppe', 'Psat3g001160' => 'psa', 'Psat6g181880' => 'psa', 'Psat7g233720' => 'psa', 'PSO063G7587' => 'pso', 'PSO339G2145' => 'pso', 'PSO339G3369' => 'pso', 'PSO478G2747' => 'pso', 'PSO513G0140' => 'pso', 'PSO782G1614' => 'pso', 'PSO782G4889' => 'pso', 'PSO782G5485' => 'pso', 'PSO801G0241' => 'pso', 'QL07p048854' => 'qlo', 'QL08p046745' => 'qlo', 'QL08p052606' => 'qlo', 'QL08p053414' => 'qlo', 'QL08p054868' => 'qlo', 'RcHm_v2.0_Chr1g0350251' => 'rch', 'RcHm_v2.0_Chr1g0360851' => 'rch', 'RcHm_v2.0_Chr1g0362791' => 'rch', 'RcHm_v2.0_Chr3g0466281' => 'rch', 'RcHm_v2.0_Chr7g0201481' => 'rch', 'Rhsim01G0148600' => 'rsi', 'Rhsim05G0194400' => 'rsi', 'Rhsim07G0000700' => 'rsi', 'Rhsim07G0000800' => 'rsi', 'Rhsim07G0027900' => 'rsi', 'Rhsim09G0149500' => 'rsi', 'RhsimUnG0186900' => 'rsi', 'Sabra01G0089900' => 'sbr', 'Sabra02G0114700' => 'sbr', 'Sabra02G0116300' => 'sbr', 'Sabra03G0080100' => 'sbr', 'Sabra08G0024300' => 'sbr', 'Sabra10G0174300' => 'sbr', 'Sabra14G0048900' => 'sbr', 'Sabra14G0076500' => 'sbr', 'SalBow5G2513' => 'sbo', 'Sc01g0002300' => 'sci', 'Sc01g0004450' => 'sci', 'Sc06g0001680' => 'sci', 'Sc23g0003580' => 'sci', 'Sed0000913' => 'sed', 'Sed0001655' => 'sed', 'Sed0007745' => 'sed', 'Sed0010951' => 'sed', 'Sed0017599' => 'sed', 'Sed0021405' => 'sed', 'Sed0022810' => 'sed', 'SEGI_07099' => 'sgi', 'SEGI_11931' => 'sgi', 'SEGI_13187' => 'sgi', 'SEGI_29958' => 'sgi', 'SEGI_36351' => 'sgi', 'SGA_v2.0_scaffold126G33770' => 'sas', 'SGA_v2.0_scaffold153G37003' => 'sas', 'SGA_v2.0_scaffold2G01359' => 'sas', 'SGA_v2.0_scaffold5G03064' => 'sas', 'SGA_v2.0_scaffold95G28903' => 'sas', 'SHI12701' => 'shi', 'SHI26410' => 'shi', 'SHI38997' => 'shi', 'SHI53759' => 'shi', 'SHI53886' => 'shi', 'SHI54714' => 'shi', 'SMO011G0041' => 'smo', 'SMO146G0251' => 'smo', 'SMO160G0004' => 'smo', 'SMO174G0057' => 'smo', 'SMO244G0089' => 'smo', 'SMO296G0011' => 'smo', 'Solyc01g091280.3' => 'sly', 'Solyc05g047610.3' => 'sly', 'Solyc05g047640.3' => 'sly', 'Solyc05g055630.3' => 'sly', 'Solyc10g018160.2' => 'sly', 'Solyc10g084820.2' => 'sly', 'Solyc10g086565.2' => 'sly', 'Sopen01g037030' => 'spe', 'Sopen05g027920' => 'spe', 'Sopen05g034070' => 'spe', 'Sopen10g007260' => 'spe', 'Sopen10g034260' => 'spe', 'Sopen10g035950' => 'spe', 'Sp3g07710' => 'spa', 'Sp4g27420' => 'spa', 'Sp5g02450' => 'spa', 'Sp6g01280' => 'spa', 'Sp6g38480' => 'spa', 'Sp7g20780' => 'spa', 'TAR374G1413' => 'tar', 'TAR623G1777' => 'tar', 'TAR629G2370' => 'tar', 'TAR633G1759' => 'tar', 'TAR636G3387' => 'tar', 'THA.LOC104802447' => 'tha', 'THA.LOC104813916' => 'tha', 'THA.LOC104816423' => 'tha', 'THA.LOC104817246' => 'tha', 'THA.LOC104825895' => 'tha', 'Thecc.01G335200' => 'tca', 'Thecc.01G377400' => 'tca', 'Thecc.03G262200' => 'tca', 'Thecc.05G036800' => 'tca', 'Thecc.10G080500' => 'tca', 'Thecc.10G080800' => 'tca', 'Thhalv10001560m.g' => 'esa', 'Thhalv10006120m.g' => 'esa', 'Thhalv10014375m.g' => 'esa', 'Thhalv10021264m.g' => 'esa', 'Thhalv10028856m.g' => 'esa', 'TPR.G1914' => 'tpr', 'TPR.G4757' => 'tpr', 'TPR.G5595' => 'tpr', 'TWI14G0952' => 'twi', 'TWI14G1307' => 'twi', 'TWI38G2143' => 'twi', 'TWI59G0826' => 'twi', 'TWI77G0527' => 'twi', 'TWI81G0150' => 'twi', 'unitig_21.g21018' => 'ugi', 'unitig_26.g9725' => 'ugi', 'unitig_744.g24653' => 'ugi', 'unitig_749.g13778' => 'ugi', 'unitig_899.g15035' => 'ugi', 'vmacro04296' => 'vma', 'vmacro04852' => 'vma', 'vmacro13404' => 'vma', 'vmacro20169' => 'vma', 'vmacro21014' => 'vma', 'VMungo0331G0237' => 'vmu', 'VMungo0331G0706' => 'vmu', 'VMungo0331G1361' => 'vmu', 'VMungo0331G1489' => 'vmu', 'VMungo0540G1037' => 'vmu', 'VMungo0720G2487' => 'vmu', 'VMungo0720G2721' => 'vmu', 'Zm00001eb086860' => 'zma', 'Zm00001eb104760' => 'zma', 'Zm00001eb148220' => 'zma', 'Zm00001eb259030' => 'zma', 'Zm00001eb289590' => 'zma', 'Zm00001eb420150' => 'zma' ) $gf_id = 'HOM05D000968' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000968' ) $data_identifier = 'HOM05D000968' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 19, 'bol' => (int) 9, 'bra' => (int) 12, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 5, 'ccan' => (int) 7, 'cde' => (int) 5, 'cfa' => (int) 8, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 4, 'dca' => (int) 5, 'din' => (int) 5, 'dzi' => (int) 12, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 25, 'fve' => (int) 5, 'gma' => (int) 9, 'ghi' => (int) 18, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 7, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 5, 'sun' => (int) 2, 'lal' => (int) 9, 'lja' => (int) 5, 'lonja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 9, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 2, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 3, 'stu' => (int) 6, 'pvu' => (int) 4, 'ptr' => (int) 8, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 3, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 1, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 5, 'sas' => (int) 5, 'shi' => (int) 6, 'smo' => (int) 6, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 3, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420150' $species_info = array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ) $local_species = 'cla' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000968', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p31690' => 'bna', 'A03p36040' => 'bna', 'A03p53730' => 'bna', 'A04p01410' => 'bna', 'A05p05420' => 'bna', 'A05p39630' => 'bna', 'A05p39640' => 'bna', 'A09p00970' => 'bna', 'A09p53060' => 'bna', 'A10p31890' => 'bna', 'Aa31LG10G15040' => 'aar', 'Aa31LG1G21090' => 'aar', 'Aa31LG1G26900' => 'aar', 'Aa31LG3G1820' => 'aar', 'Aa31LG5G1100' => 'aar', 'Aa31LG6G4740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2265' => 'aag', 'Actinidia07998' => 'ach', 'Actinidia11266' => 'ach', 'Actinidia12682' => 'ach', 'Actinidia26479' => 'ach', 'Actinidia31406' => 'ach', 'Actinidia32437' => 'ach', 'Actinidia38862' => 'ach', 'Ah.05g174230' => 'amhyb', 'Ah.05g179070' => 'amhyb', 'Ah.05g179090' => 'amhyb', 'Ah.12g059950' => 'amhyb', 'AL3G20480' => 'aly', 'AL4G44520' => 'aly', 'AL5G43110' => 'aly', 'AL6G13890' => 'aly', 'AL6G52620' => 'aly', 'AL7G30830' => 'aly', 'Aqoxy1G00899' => 'aox', 'Aqoxy5G04333' => 'aox', 'Aqoxy7G00641' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3IZ0NN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4EF6AW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W9P8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79GA3M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C43NQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFCU6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G95YVJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCHK29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LU1UG8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX91RN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGB4B1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8DA0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9H7JI' => 'arhy', 'AT3G09320' => 'ath', 'AT3G60800' => 'ath', 'AT4G00840' => 'ath', 'AT4G22750' => 'ath', 'AT5G04270' => 'ath', 'ATR0090G003' => 'atr', 'ATR0559G349' => 'atr', 'ATR0680G261' => 'atr', 'ATR0810G048' => 'atr', 'Atru.chr12.831' => 'acertr', 'Atru.chr5.303' => 'acertr', 'Atru.chr5.748' => 'acertr', 'Atru.chr8.1999' => 'acertr', 'Atru.chr9.1436' => 'acertr', 'AUR62004211' => 'cqu', 'AUR62004548' => 'cqu', 'AUR62013637' => 'cqu', 'AUR62022662' => 'cqu', 'AUR62025777' => 'cqu', 'AUR62042386' => 'cqu', 'BcaB01g02310' => 'bca', 'BcaB01g06062' => 'bca', 'BcaB02g08975' => 'bca', 'BcaB02g08980' => 'bca', 'BcaC01g04228' => 'bca', 'BcaC01g06830' => 'bca', 'BcaC02g10186' => 'bca', 'BcaC02g12214' => 'bca', 'BcaC04g24101' => 'bca', 'BcaC05g29520' => 'bca', 'BcaC05g29661' => 'bca', 'BcaC06g32130' => 'bca', 'BcaC06g32131' => 'bca', 'BcaC07g40601' => 'bca', 'BcaC07g42641' => 'bca', 'BcaNung01038' => 'bca', 'BcaNung01676' => 'bca', 'BcaNung02480' => 'bca', 'BcaNung07376' => 'bca', 'BolC3t16146H' => 'bol', 'BolC3t16637H' => 'bol', 'BolC4t22257H' => 'bol', 'BolC4t24728H' => 'bol', 'BolC5t34517H' => 'bol', 'BolC7t45703H' => 'bol', 'BolC8t51166H' => 'bol', 'BolC9t53038H' => 'bol', 'BolC9t60000H' => 'bol', 'BraA01t01345Z' => 'bra', 'BraA01t01346Z' => 'bra', 'BraA01t01348Z' => 'bra', 'BraA03t12347Z' => 'bra', 'BraA03t12775Z' => 'bra', 'BraA03t14439Z' => 'bra', 'BraA04t15860Z' => 'bra', 'BraA05t19511Z' => 'bra', 'BraA05t22746Z' => 'bra', 'BraA09t35767Z' => 'bra', 'BraA09t40732Z' => 'bra', 'BraA10t45233Z' => 'bra', 'C03p38720' => 'bna', 'C03p43680' => 'bna', 'C04p06350' => 'bna', 'C04p31800' => 'bna', 'C05p58680' => 'bna', 'C07p52110' => 'bna', 'C08p35760' => 'bna', 'C09p01050' => 'bna', 'C09p72600' => 'bna', 'CAN.G106.2' => 'can', 'CAN.G1482.1' => 'can', 'CAN.G324.12' => 'can', 'CAN.G388.20' => 'can', 'CAN.G412.7' => 'can', 'CAN.G694.32' => 'can', 'CAN.G92.12' => 'can', 'CANSAT11G2353' => 'cansat', 'CANSAT21G1398' => 'cansat', 'CANSAT56G2456' => 'cansat', 'CANSAT56G3031' => 'cansat', 'CANSAT56G4539' => 'cansat', 'CARHR083680' => 'chi', 'CARHR171190' => 'chi', 'CARHR209010' => 'chi', 'CARHR229680' => 'chi', 'CARHR249490' => 'chi', 'Carub.0003s0844' => 'cru', 'Carub.0005s2755' => 'cru', 'Carub.0006s0322' => 'cru', 'Carub.0006s3586' => 'cru', 'Carub.0007s1855' => 'cru', 'Ca_07808_v3' => 'car', 'Ca_09535_v3' => 'car', 'Ca_10548_v3' => 'car', 'Ca_19913_v3' => 'car', 'Ca_19916_v3' => 'car', 'Ca_19975_v3' => 'car', 'CBR_g22876' => 'cbr', 'CBR_g22879' => 'cbr', 'CBR_g38491' => 'cbr', 'CBR_g54185' => 'cbr', 'CBR_g54190' => 'cbr', 'Cc02_g11020' => 'ccan', 'Cc02_g23920' => 'ccan', 'Cc02_g39860' => 'ccan', 'Cc02_g39870' => 'ccan', 'Cc03_g06760' => 'ccan', 'Cc06_g02450' => 'ccan', 'Cc09_g09450' => 'ccan', 'CDE02G1959' => 'cde', 'CDE04G0600' => 'cde', 'CDE07G1996' => 'cde', 'CDE07G2078' => 'cde', 'CDE11G0611' => 'cde', 'Cfa001683' => 'cfa', 'Cfa001734' => 'cfa', 'Cfa001737' => 'cfa', 'Cfa003751' => 'cfa', 'Cfa012019' => 'cfa', 'Cfa017353' => 'cfa', 'Cfa017732' => 'cfa', 'Cfa022464' => 'cfa', 'Ciclev10012400m.g' => 'ccl', 'Ciclev10021242m.g' => 'ccl', 'Ciclev10021302m.g' => 'ccl', 'Ciclev10021463m.g' => 'ccl', 'Ciclev10032359m.g' => 'ccl', 'CiPaw.01G081000' => 'cil', 'CiPaw.01G262500' => 'cil', 'CiPaw.01G269800' => 'cil', 'CiPaw.02G168400' => 'cil', 'CiPaw.05G119500' => 'cil', 'CiPaw.11G147300' => 'cil', 'ClCG01G003630' => 'cla', 'ClCG05G000510' => 'cla', 'ClCG05G002300' => 'cla', 'ClCG08G007650' => 'cla', 'ClCG10G021250' => 'cla', 'COL.COLO4_06218' => 'col', 'COL.COLO4_12538' => 'col', 'COL.COLO4_14775' => 'col', 'COL.COLO4_23875' => 'col', 'Cpa.g.sc141.16' => 'cpa', 'Cpa.g.sc169.16' => 'cpa', 'Cpa.g.sc244.4' => 'cpa', 'Cpa.g.sc244.5' => 'cpa', 'Cpa.g.sc29.87' => 'cpa', 'Cpa.g.sc53.115' => 'cpa', 'Cre03.g207502' => 'cre', 'Cre06.g277000' => 'cre', 'Cre09.g394050' => 'cre', 'CsaV3_3G007680' => 'csa', 'CsaV3_3G009710' => 'csa', 'CsaV3_3G034790' => 'csa', 'CsaV3_5G003750' => 'csa', 'CsaV3_6G036620' => 'csa', 'CSS0002288' => 'camsi', 'CSS0011250' => 'camsi', 'CSS0021619' => 'camsi', 'CSS0046701' => 'camsi', 'DCAR_006420' => 'dca', 'DCAR_006865' => 'dca', 'DCAR_008558' => 'dca', 'DCAR_028754' => 'dca', 'DCAR_028755' => 'dca', 'Dinv31218' => 'din', 'Dinv32371' => 'din', 'Dinv34250' => 'din', 'Dinv37156' => 'din', 'Dinv43704' => 'din', 'Duzib093G1811' => 'dzi', 'Duzib106G1622' => 'dzi', 'Duzib114G0504' => 'dzi', 'Duzib128G0338' => 'dzi', 'Duzib128G1577' => 'dzi', 'Duzib133G0104' => 'dzi', 'Duzib133G1080' => 'dzi', 'Duzib138G0324' => 'dzi', 'Duzib138G0394' => 'dzi', 'Duzib205G0122' => 'dzi', 'Duzib268G1020' => 'dzi', 'Duzib268G1359' => 'dzi', 'ECA232G3929' => 'eca', 'ECA236G2210' => 'eca', 'ECA236G2287' => 'eca', 'ECA240G4568' => 'eca', 'ECA247G0894' => 'eca', 'EL10Ac1g00200' => 'bvu', 'EL10Ac1g00886' => 'bvu', 'EL10As1g23091' => 'bvu', 'EL10As1g23092' => 'bvu', 'Eucgr.A01284' => 'egr', 'Eucgr.A01285' => 'egr', 'Eucgr.D02456' => 'egr', 'Eucgr.E00018' => 'egr', 'Eucgr.E01439' => 'egr', 'Eucgr.G02859' => 'egr', 'FAN01G0168' => 'fan', 'FAN01G0453' => 'fan', 'FAN01G2761' => 'fan', 'FAN02G1239' => 'fan', 'FAN03G0645' => 'fan', 'FAN03G2707' => 'fan', 'FAN03G2978' => 'fan', 'FAN04G0227' => 'fan', 'FAN06G0091' => 'fan', 'FAN06G1418' => 'fan', 'FAN06G1512' => 'fan', 'FAN06G1986' => 'fan', 'FAN06G2905' => 'fan', 'FAN06G4325' => 'fan', 'FAN08G0033' => 'fan', 'FAN09G0642' => 'fan', 'FAN10G1763' => 'fan', 'FAN10G2026' => 'fan', 'FAN10G2513' => 'fan', 'FAN10G3402' => 'fan', 'FAN10G3564' => 'fan', 'FAN10G3987' => 'fan', 'FAN13G1490' => 'fan', 'FAN14G5857' => 'fan', 'FAN18G1188' => 'fan', 'FvH4_5g00750' => 'fve', 'FvH4_6g13410' => 'fve', 'FvH4_7g11740' => 'fve', 'FvH4_7g17410' => 'fve', 'FvH4_7g18860' => 'fve', 'Glyma.01G099100' => 'gma', 'Glyma.01G142300' => 'gma', 'Glyma.03G025500' => 'gma', 'Glyma.03G069700' => 'gma', 'Glyma.03G260000' => 'gma', 'Glyma.09G269800' => 'gma', 'Glyma.10G208700' => 'gma', 'Glyma.18G220400' => 'gma', 'Glyma.20G182000' => 'gma', 'Gohir.A01G221726' => 'ghi', 'Gohir.A07G134600' => 'ghi', 'Gohir.A07G146000' => 'ghi', 'Gohir.A08G173900' => 'ghi', 'Gohir.A09G194900' => 'ghi', 'Gohir.A10G204100' => 'ghi', 'Gohir.A11G080600' => 'ghi', 'Gohir.A11G327500' => 'ghi', 'Gohir.A12G101800' => 'ghi', 'Gohir.D01G211200' => 'ghi', 'Gohir.D07G139200' => 'ghi', 'Gohir.D07G152100' => 'ghi', 'Gohir.D08G192600' => 'ghi', 'Gohir.D09G189200' => 'ghi', 'Gohir.D10G212000' => 'ghi', 'Gohir.D11G085200' => 'ghi', 'Gohir.D11G346400' => 'ghi', 'Gohir.D12G104800' => 'ghi', 'Gorai.001G151300' => 'gra', 'Gorai.001G174100' => 'gra', 'Gorai.002G257000' => 'gra', 'Gorai.004G202600' => 'gra', 'Gorai.007G090900' => 'gra', 'Gorai.007G376700' => 'gra', 'Gorai.008G114100' => 'gra', 'Gorai.011G237900' => 'gra', 'GSVIVG01005450001' => 'vvi', 'GSVIVG01016232001' => 'vvi', 'GSVIVG01026157001' => 'vvi', 'GSVIVG01027419001' => 'vvi', 'GSVIVG01027631001' => 'vvi', 'GSVIVG01034143001' => 'vvi', 'HanXRQChr03g0093921' => 'han', 'HanXRQChr04g0120001' => 'han', 'HanXRQChr04g0122561' => 'han', 'HanXRQChr09g0246851' => 'han', 'HanXRQChr10g0293311' => 'han', 'HanXRQChr13g0425231' => 'han', 'HanXRQChr16g0532571' => 'han', 'Haze_09050' => 'cav', 'Haze_15715' => 'cav', 'Haze_15716' => 'cav', 'Haze_16803' => 'cav', 'Haze_16850' => 'cav', 'Hma1.2p1_0301F.1_g118655' => 'hma', 'Hma1.2p1_0309F.1_g120590' => 'hma', 'Hma1.2p1_0936F.1_g238900' => 'hma', 'Hma1.2p1_3552F.1_g336740' => 'hma', 'HPP92_003520' => 'vpl', 'HPP92_006628' => 'vpl', 'HPP92_006645' => 'vpl', 'HPP92_014669' => 'vpl', 'HPP92_015077' => 'vpl', 'Hund16742' => 'sun', 'Hund17022' => 'sun', 'Lalb_Chr02g0152131' => 'lal', 'Lalb_Chr05g0225371' => 'lal', 'Lalb_Chr07g0189841' => 'lal', 'Lalb_Chr07g0192961' => 'lal', 'Lalb_Chr12g0208221' => 'lal', 'Lalb_Chr13g0291211' => 'lal', 'Lalb_Chr13g0291781' => 'lal', 'Lalb_Chr18g0044651' => 'lal', 'Lalb_Chr21g0313731' => 'lal', 'Lj1g0022533' => 'lja', 'Lj2A18T50' => 'lonja', 'Lj2A92G93' => 'lonja', 'Lj3A965T73' => 'lonja', 'Lj3g0000673' => 'lja', 'Lj3g0002666' => 'lja', 'Lj4g0016985' => 'lja', 'Lj5g0003625' => 'lja', 'Lj7A529G36' => 'lonja', 'Lj9A569T49' => 'lonja', 'Lj9A604T63' => 'lonja', 'Lsat_1_v5_gn_3_132060' => 'lsa', 'Lsat_1_v5_gn_4_68941' => 'lsa', 'Lsat_1_v5_gn_5_95580' => 'lsa', 'Lsat_1_v5_gn_7_161' => 'lsa', 'Lsat_1_v5_gn_7_7041' => 'lsa', 'Lsat_1_v5_gn_9_33481' => 'lsa', 'Lsat_1_v5_gn_9_68260' => 'lsa', 'Manes.01G073100' => 'mes', 'Manes.01G266300' => 'mes', 'Manes.02G033300' => 'mes', 'Manes.05G017900' => 'mes', 'Manes.05G046100' => 'mes', 'Manes.08G080900' => 'mes', 'Manes.10G049400' => 'mes', 'Mapoly0009s0186' => 'mpo', 'Mapoly0036s0118' => 'mpo', 'Mapoly0101s0046' => 'mpo', 'MBI04_g30218_MAGBIO' => 'mbi', 'MBI04_g35564_MAGBIO' => 'mbi', 'MBI12_g34011_MAGBIO' => 'mbi', 'MBI14_g04655_MAGBIO' => 'mbi', 'MCO07G653' => 'mco', 'MCO10G173' => 'mco', 'MD01G1087100' => 'mdo', 'MD01G1104200' => 'mdo', 'MD02G1205100' => 'mdo', 'MD04G1079200' => 'mdo', 'MD04G1131400' => 'mdo', 'MD07G1121600' => 'mdo', 'MD07G1157300' => 'mdo', 'MD07G1171000' => 'mdo', 'MD12G1144500' => 'mdo', 'Medtr1g094610' => 'mtr', 'Medtr4g021795' => 'mtr', 'Medtr4g023760' => 'mtr', 'Medtr7g118050' => 'mtr', 'MELO3C005582.2' => 'cme', 'MELO3C005989.2' => 'cme', 'MELO3C006192.2' => 'cme', 'MELO3C009248.2' => 'cme', 'MELO3C019817.2' => 'cme', 'Migut.B01625' => 'egut', 'Migut.B01915' => 'egut', 'Migut.F01721' => 'egut', 'Migut.J00314' => 'egut', 'MSTRG.20742' => 'ama', 'MSTRG.8134' => 'ama', 'Nitab4.5_0000096g0010' => 'nta', 'Nitab4.5_0000202g0030' => 'nta', 'Nitab4.5_0000216g0370' => 'nta', 'Nitab4.5_0000457g0230' => 'nta', 'Nitab4.5_0001702g0170' => 'nta', 'Nitab4.5_0003607g0010' => 'nta', 'Nitab4.5_0004917g0020' => 'nta', 'Nitab4.5_0007059g0010' => 'nta', 'Nitab4.5_0007184g0010' => 'nta', 'Nitab4.5_0007346g0020' => 'nta', 'Nn1g00410' => 'nnu', 'Nn1g01252' => 'nnu', 'Nn2g11168' => 'nnu', 'Nn2g13403' => 'nnu', 'Nn2g13760' => 'nnu', 'Nn4g26380' => 'nnu', 'Oeu000806.2' => 'oeu', 'Oeu005788.1' => 'oeu', 'Oeu006900.3' => 'oeu', 'Oeu007797.1' => 'oeu', 'Oeu011932.1' => 'oeu', 'Oeu022739.1' => 'oeu', 'Oeu037918.1' => 'oeu', 'Oeu055490.2' => 'oeu', 'Os01g0844400' => 'osa', 'Os02g0819100' => 'osa', 'Os03g0804300' => 'osa', 'Os05g0458000' => 'osa', 'Os07g0467800' => 'osa', 'Os12g0602200' => 'osa', 'Peaxi162Scf00013g03444' => 'pax', 'Peaxi162Scf00094g01120' => 'pax', 'Peaxi162Scf00191g01211' => 'pax', 'Peaxi162Scf00238g01110' => 'pax', 'Peaxi162Scf00330g00719' => 'pax', 'Peaxi162Scf00627g00018' => 'pax', 'PGR031G2686' => 'pgr', 'PGR042G0809' => 'pgr', 'PGR142G0193' => 'pgr', 'PGSC0003DMG400011066' => 'stu', 'PGSC0003DMG400012041' => 'stu', 'PGSC0003DMG400013678' => 'stu', 'PGSC0003DMG400023477' => 'stu', 'PGSC0003DMG400025956' => 'stu', 'PGSC0003DMG401019151' => 'stu', 'Phvul.006G116400' => 'pvu', 'Phvul.007G097300' => 'pvu', 'Phvul.010G015000' => 'pvu', 'Phvul.010G083900' => 'pvu', 'Potri.001G117100' => 'ptr', 'Potri.002G147300' => 'ptr', 'Potri.003G115600' => 'ptr', 'Potri.006G087400' => 'ptr', 'Potri.010G226100' => 'ptr', 'Potri.014G069200' => 'ptr', 'Potri.014G104000' => 'ptr', 'Potri.016G100200' => 'ptr', 'Pp3c10_20450' => 'ppa', 'Pp3c1_42400' => 'ppa', 'Pp3c3_24390' => 'ppa', 'Pp3c3_2860' => 'ppa', 'PRCOL_00003193' => 'pco', 'Prupe.2G144500' => 'ppe', 'Prupe.2G195700' => 'ppe', 'Prupe.2G209800' => 'ppe', 'Prupe.5G080000' => 'ppe', 'Prupe.6G257900' => 'ppe', 'Psat3g001160' => 'psa', 'Psat6g181880' => 'psa', 'Psat7g233720' => 'psa', 'PSO063G7587' => 'pso', 'PSO339G2145' => 'pso', 'PSO339G3369' => 'pso', 'PSO478G2747' => 'pso', 'PSO513G0140' => 'pso', 'PSO782G1614' => 'pso', 'PSO782G4889' => 'pso', 'PSO782G5485' => 'pso', 'PSO801G0241' => 'pso', 'QL07p048854' => 'qlo', 'QL08p046745' => 'qlo', 'QL08p052606' => 'qlo', 'QL08p053414' => 'qlo', 'QL08p054868' => 'qlo', 'RcHm_v2.0_Chr1g0350251' => 'rch', 'RcHm_v2.0_Chr1g0360851' => 'rch', 'RcHm_v2.0_Chr1g0362791' => 'rch', 'RcHm_v2.0_Chr3g0466281' => 'rch', 'RcHm_v2.0_Chr7g0201481' => 'rch', 'Rhsim01G0148600' => 'rsi', 'Rhsim05G0194400' => 'rsi', 'Rhsim07G0000700' => 'rsi', 'Rhsim07G0000800' => 'rsi', 'Rhsim07G0027900' => 'rsi', 'Rhsim09G0149500' => 'rsi', 'RhsimUnG0186900' => 'rsi', 'Sabra01G0089900' => 'sbr', 'Sabra02G0114700' => 'sbr', 'Sabra02G0116300' => 'sbr', 'Sabra03G0080100' => 'sbr', 'Sabra08G0024300' => 'sbr', 'Sabra10G0174300' => 'sbr', 'Sabra14G0048900' => 'sbr', 'Sabra14G0076500' => 'sbr', 'SalBow5G2513' => 'sbo', 'Sc01g0002300' => 'sci', 'Sc01g0004450' => 'sci', 'Sc06g0001680' => 'sci', 'Sc23g0003580' => 'sci', 'Sed0000913' => 'sed', 'Sed0001655' => 'sed', 'Sed0007745' => 'sed', 'Sed0010951' => 'sed', 'Sed0017599' => 'sed', 'Sed0021405' => 'sed', 'Sed0022810' => 'sed', 'SEGI_07099' => 'sgi', 'SEGI_11931' => 'sgi', 'SEGI_13187' => 'sgi', 'SEGI_29958' => 'sgi', 'SEGI_36351' => 'sgi', 'SGA_v2.0_scaffold126G33770' => 'sas', 'SGA_v2.0_scaffold153G37003' => 'sas', 'SGA_v2.0_scaffold2G01359' => 'sas', 'SGA_v2.0_scaffold5G03064' => 'sas', 'SGA_v2.0_scaffold95G28903' => 'sas', 'SHI12701' => 'shi', 'SHI26410' => 'shi', 'SHI38997' => 'shi', 'SHI53759' => 'shi', 'SHI53886' => 'shi', 'SHI54714' => 'shi', 'SMO011G0041' => 'smo', 'SMO146G0251' => 'smo', 'SMO160G0004' => 'smo', 'SMO174G0057' => 'smo', 'SMO244G0089' => 'smo', 'SMO296G0011' => 'smo', 'Solyc01g091280.3' => 'sly', 'Solyc05g047610.3' => 'sly', 'Solyc05g047640.3' => 'sly', 'Solyc05g055630.3' => 'sly', 'Solyc10g018160.2' => 'sly', 'Solyc10g084820.2' => 'sly', 'Solyc10g086565.2' => 'sly', 'Sopen01g037030' => 'spe', 'Sopen05g027920' => 'spe', 'Sopen05g034070' => 'spe', 'Sopen10g007260' => 'spe', 'Sopen10g034260' => 'spe', 'Sopen10g035950' => 'spe', 'Sp3g07710' => 'spa', 'Sp4g27420' => 'spa', 'Sp5g02450' => 'spa', 'Sp6g01280' => 'spa', 'Sp6g38480' => 'spa', 'Sp7g20780' => 'spa', 'TAR374G1413' => 'tar', 'TAR623G1777' => 'tar', 'TAR629G2370' => 'tar', 'TAR633G1759' => 'tar', 'TAR636G3387' => 'tar', 'THA.LOC104802447' => 'tha', 'THA.LOC104813916' => 'tha', 'THA.LOC104816423' => 'tha', 'THA.LOC104817246' => 'tha', 'THA.LOC104825895' => 'tha', 'Thecc.01G335200' => 'tca', 'Thecc.01G377400' => 'tca', 'Thecc.03G262200' => 'tca', 'Thecc.05G036800' => 'tca', 'Thecc.10G080500' => 'tca', 'Thecc.10G080800' => 'tca', 'Thhalv10001560m.g' => 'esa', 'Thhalv10006120m.g' => 'esa', 'Thhalv10014375m.g' => 'esa', 'Thhalv10021264m.g' => 'esa', 'Thhalv10028856m.g' => 'esa', 'TPR.G1914' => 'tpr', 'TPR.G4757' => 'tpr', 'TPR.G5595' => 'tpr', 'TWI14G0952' => 'twi', 'TWI14G1307' => 'twi', 'TWI38G2143' => 'twi', 'TWI59G0826' => 'twi', 'TWI77G0527' => 'twi', 'TWI81G0150' => 'twi', 'unitig_21.g21018' => 'ugi', 'unitig_26.g9725' => 'ugi', 'unitig_744.g24653' => 'ugi', 'unitig_749.g13778' => 'ugi', 'unitig_899.g15035' => 'ugi', 'vmacro04296' => 'vma', 'vmacro04852' => 'vma', 'vmacro13404' => 'vma', 'vmacro20169' => 'vma', 'vmacro21014' => 'vma', 'VMungo0331G0237' => 'vmu', 'VMungo0331G0706' => 'vmu', 'VMungo0331G1361' => 'vmu', 'VMungo0331G1489' => 'vmu', 'VMungo0540G1037' => 'vmu', 'VMungo0720G2487' => 'vmu', 'VMungo0720G2721' => 'vmu', 'Zm00001eb086860' => 'zma', 'Zm00001eb104760' => 'zma', 'Zm00001eb148220' => 'zma', 'Zm00001eb259030' => 'zma', 'Zm00001eb289590' => 'zma', 'Zm00001eb420150' => 'zma' ), 'gf_id' => 'HOM05D000968', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000968' ), 'data_identifier' => 'HOM05D000968', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000968', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p31690' => 'bna', 'A03p36040' => 'bna', 'A03p53730' => 'bna', 'A04p01410' => 'bna', 'A05p05420' => 'bna', 'A05p39630' => 'bna', 'A05p39640' => 'bna', 'A09p00970' => 'bna', 'A09p53060' => 'bna', 'A10p31890' => 'bna', 'Aa31LG10G15040' => 'aar', 'Aa31LG1G21090' => 'aar', 'Aa31LG1G26900' => 'aar', 'Aa31LG3G1820' => 'aar', 'Aa31LG5G1100' => 'aar', 'Aa31LG6G4740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2265' => 'aag', 'Actinidia07998' => 'ach', 'Actinidia11266' => 'ach', 'Actinidia12682' => 'ach', 'Actinidia26479' => 'ach', 'Actinidia31406' => 'ach', 'Actinidia32437' => 'ach', 'Actinidia38862' => 'ach', 'Ah.05g174230' => 'amhyb', 'Ah.05g179070' => 'amhyb', 'Ah.05g179090' => 'amhyb', 'Ah.12g059950' => 'amhyb', 'AL3G20480' => 'aly', 'AL4G44520' => 'aly', 'AL5G43110' => 'aly', 'AL6G13890' => 'aly', 'AL6G52620' => 'aly', 'AL7G30830' => 'aly', 'Aqoxy1G00899' => 'aox', 'Aqoxy5G04333' => 'aox', 'Aqoxy7G00641' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3IZ0NN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4EF6AW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W9P8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79GA3M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C43NQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFCU6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G95YVJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCHK29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LU1UG8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX91RN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGB4B1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8DA0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9H7JI' => 'arhy', 'AT3G09320' => 'ath', 'AT3G60800' => 'ath', 'AT4G00840' => 'ath', 'AT4G22750' => 'ath', 'AT5G04270' => 'ath', 'ATR0090G003' => 'atr', 'ATR0559G349' => 'atr', 'ATR0680G261' => 'atr', 'ATR0810G048' => 'atr', 'Atru.chr12.831' => 'acertr', 'Atru.chr5.303' => 'acertr', 'Atru.chr5.748' => 'acertr', 'Atru.chr8.1999' => 'acertr', 'Atru.chr9.1436' => 'acertr', 'AUR62004211' => 'cqu', 'AUR62004548' => 'cqu', 'AUR62013637' => 'cqu', 'AUR62022662' => 'cqu', 'AUR62025777' => 'cqu', 'AUR62042386' => 'cqu', 'BcaB01g02310' => 'bca', 'BcaB01g06062' => 'bca', 'BcaB02g08975' => 'bca', 'BcaB02g08980' => 'bca', 'BcaC01g04228' => 'bca', 'BcaC01g06830' => 'bca', 'BcaC02g10186' => 'bca', 'BcaC02g12214' => 'bca', 'BcaC04g24101' => 'bca', 'BcaC05g29520' => 'bca', 'BcaC05g29661' => 'bca', 'BcaC06g32130' => 'bca', 'BcaC06g32131' => 'bca', 'BcaC07g40601' => 'bca', 'BcaC07g42641' => 'bca', 'BcaNung01038' => 'bca', 'BcaNung01676' => 'bca', 'BcaNung02480' => 'bca', 'BcaNung07376' => 'bca', 'BolC3t16146H' => 'bol', 'BolC3t16637H' => 'bol', 'BolC4t22257H' => 'bol', 'BolC4t24728H' => 'bol', 'BolC5t34517H' => 'bol', 'BolC7t45703H' => 'bol', 'BolC8t51166H' => 'bol', 'BolC9t53038H' => 'bol', 'BolC9t60000H' => 'bol', 'BraA01t01345Z' => 'bra', 'BraA01t01346Z' => 'bra', 'BraA01t01348Z' => 'bra', 'BraA03t12347Z' => 'bra', 'BraA03t12775Z' => 'bra', 'BraA03t14439Z' => 'bra', 'BraA04t15860Z' => 'bra', 'BraA05t19511Z' => 'bra', 'BraA05t22746Z' => 'bra', 'BraA09t35767Z' => 'bra', 'BraA09t40732Z' => 'bra', 'BraA10t45233Z' => 'bra', 'C03p38720' => 'bna', 'C03p43680' => 'bna', 'C04p06350' => 'bna', 'C04p31800' => 'bna', 'C05p58680' => 'bna', 'C07p52110' => 'bna', 'C08p35760' => 'bna', 'C09p01050' => 'bna', 'C09p72600' => 'bna', 'CAN.G106.2' => 'can', 'CAN.G1482.1' => 'can', 'CAN.G324.12' => 'can', 'CAN.G388.20' => 'can', 'CAN.G412.7' => 'can', 'CAN.G694.32' => 'can', 'CAN.G92.12' => 'can', 'CANSAT11G2353' => 'cansat', 'CANSAT21G1398' => 'cansat', 'CANSAT56G2456' => 'cansat', 'CANSAT56G3031' => 'cansat', 'CANSAT56G4539' => 'cansat', 'CARHR083680' => 'chi', 'CARHR171190' => 'chi', 'CARHR209010' => 'chi', 'CARHR229680' => 'chi', 'CARHR249490' => 'chi', 'Carub.0003s0844' => 'cru', 'Carub.0005s2755' => 'cru', 'Carub.0006s0322' => 'cru', 'Carub.0006s3586' => 'cru', 'Carub.0007s1855' => 'cru', 'Ca_07808_v3' => 'car', 'Ca_09535_v3' => 'car', 'Ca_10548_v3' => 'car', 'Ca_19913_v3' => 'car', 'Ca_19916_v3' => 'car', 'Ca_19975_v3' => 'car', 'CBR_g22876' => 'cbr', 'CBR_g22879' => 'cbr', 'CBR_g38491' => 'cbr', 'CBR_g54185' => 'cbr', 'CBR_g54190' => 'cbr', 'Cc02_g11020' => 'ccan', 'Cc02_g23920' => 'ccan', 'Cc02_g39860' => 'ccan', 'Cc02_g39870' => 'ccan', 'Cc03_g06760' => 'ccan', 'Cc06_g02450' => 'ccan', 'Cc09_g09450' => 'ccan', 'CDE02G1959' => 'cde', 'CDE04G0600' => 'cde', 'CDE07G1996' => 'cde', 'CDE07G2078' => 'cde', 'CDE11G0611' => 'cde', 'Cfa001683' => 'cfa', 'Cfa001734' => 'cfa', 'Cfa001737' => 'cfa', 'Cfa003751' => 'cfa', 'Cfa012019' => 'cfa', 'Cfa017353' => 'cfa', 'Cfa017732' => 'cfa', 'Cfa022464' => 'cfa', 'Ciclev10012400m.g' => 'ccl', 'Ciclev10021242m.g' => 'ccl', 'Ciclev10021302m.g' => 'ccl', 'Ciclev10021463m.g' => 'ccl', 'Ciclev10032359m.g' => 'ccl', 'CiPaw.01G081000' => 'cil', 'CiPaw.01G262500' => 'cil', 'CiPaw.01G269800' => 'cil', 'CiPaw.02G168400' => 'cil', 'CiPaw.05G119500' => 'cil', 'CiPaw.11G147300' => 'cil', 'ClCG01G003630' => 'cla', 'ClCG05G000510' => 'cla', 'ClCG05G002300' => 'cla', 'ClCG08G007650' => 'cla', 'ClCG10G021250' => 'cla', 'COL.COLO4_06218' => 'col', 'COL.COLO4_12538' => 'col', 'COL.COLO4_14775' => 'col', 'COL.COLO4_23875' => 'col', 'Cpa.g.sc141.16' => 'cpa', 'Cpa.g.sc169.16' => 'cpa', 'Cpa.g.sc244.4' => 'cpa', 'Cpa.g.sc244.5' => 'cpa', 'Cpa.g.sc29.87' => 'cpa', 'Cpa.g.sc53.115' => 'cpa', 'Cre03.g207502' => 'cre', 'Cre06.g277000' => 'cre', 'Cre09.g394050' => 'cre', 'CsaV3_3G007680' => 'csa', 'CsaV3_3G009710' => 'csa', 'CsaV3_3G034790' => 'csa', 'CsaV3_5G003750' => 'csa', 'CsaV3_6G036620' => 'csa', 'CSS0002288' => 'camsi', 'CSS0011250' => 'camsi', 'CSS0021619' => 'camsi', 'CSS0046701' => 'camsi', 'DCAR_006420' => 'dca', 'DCAR_006865' => 'dca', 'DCAR_008558' => 'dca', 'DCAR_028754' => 'dca', 'DCAR_028755' => 'dca', 'Dinv31218' => 'din', 'Dinv32371' => 'din', 'Dinv34250' => 'din', 'Dinv37156' => 'din', 'Dinv43704' => 'din', 'Duzib093G1811' => 'dzi', 'Duzib106G1622' => 'dzi', 'Duzib114G0504' => 'dzi', 'Duzib128G0338' => 'dzi', 'Duzib128G1577' => 'dzi', 'Duzib133G0104' => 'dzi', 'Duzib133G1080' => 'dzi', 'Duzib138G0324' => 'dzi', 'Duzib138G0394' => 'dzi', 'Duzib205G0122' => 'dzi', 'Duzib268G1020' => 'dzi', 'Duzib268G1359' => 'dzi', 'ECA232G3929' => 'eca', 'ECA236G2210' => 'eca', 'ECA236G2287' => 'eca', 'ECA240G4568' => 'eca', 'ECA247G0894' => 'eca', 'EL10Ac1g00200' => 'bvu', 'EL10Ac1g00886' => 'bvu', 'EL10As1g23091' => 'bvu', 'EL10As1g23092' => 'bvu', 'Eucgr.A01284' => 'egr', 'Eucgr.A01285' => 'egr', 'Eucgr.D02456' => 'egr', 'Eucgr.E00018' => 'egr', 'Eucgr.E01439' => 'egr', 'Eucgr.G02859' => 'egr', 'FAN01G0168' => 'fan', 'FAN01G0453' => 'fan', 'FAN01G2761' => 'fan', 'FAN02G1239' => 'fan', 'FAN03G0645' => 'fan', 'FAN03G2707' => 'fan', 'FAN03G2978' => 'fan', 'FAN04G0227' => 'fan', 'FAN06G0091' => 'fan', 'FAN06G1418' => 'fan', 'FAN06G1512' => 'fan', 'FAN06G1986' => 'fan', 'FAN06G2905' => 'fan', 'FAN06G4325' => 'fan', 'FAN08G0033' => 'fan', 'FAN09G0642' => 'fan', 'FAN10G1763' => 'fan', 'FAN10G2026' => 'fan', 'FAN10G2513' => 'fan', 'FAN10G3402' => 'fan', 'FAN10G3564' => 'fan', 'FAN10G3987' => 'fan', 'FAN13G1490' => 'fan', 'FAN14G5857' => 'fan', 'FAN18G1188' => 'fan', 'FvH4_5g00750' => 'fve', 'FvH4_6g13410' => 'fve', 'FvH4_7g11740' => 'fve', 'FvH4_7g17410' => 'fve', 'FvH4_7g18860' => 'fve', 'Glyma.01G099100' => 'gma', 'Glyma.01G142300' => 'gma', 'Glyma.03G025500' => 'gma', 'Glyma.03G069700' => 'gma', 'Glyma.03G260000' => 'gma', 'Glyma.09G269800' => 'gma', 'Glyma.10G208700' => 'gma', 'Glyma.18G220400' => 'gma', 'Glyma.20G182000' => 'gma', 'Gohir.A01G221726' => 'ghi', 'Gohir.A07G134600' => 'ghi', 'Gohir.A07G146000' => 'ghi', 'Gohir.A08G173900' => 'ghi', 'Gohir.A09G194900' => 'ghi', 'Gohir.A10G204100' => 'ghi', 'Gohir.A11G080600' => 'ghi', 'Gohir.A11G327500' => 'ghi', 'Gohir.A12G101800' => 'ghi', 'Gohir.D01G211200' => 'ghi', 'Gohir.D07G139200' => 'ghi', 'Gohir.D07G152100' => 'ghi', 'Gohir.D08G192600' => 'ghi', 'Gohir.D09G189200' => 'ghi', 'Gohir.D10G212000' => 'ghi', 'Gohir.D11G085200' => 'ghi', 'Gohir.D11G346400' => 'ghi', 'Gohir.D12G104800' => 'ghi', 'Gorai.001G151300' => 'gra', 'Gorai.001G174100' => 'gra', 'Gorai.002G257000' => 'gra', 'Gorai.004G202600' => 'gra', 'Gorai.007G090900' => 'gra', 'Gorai.007G376700' => 'gra', 'Gorai.008G114100' => 'gra', 'Gorai.011G237900' => 'gra', 'GSVIVG01005450001' => 'vvi', 'GSVIVG01016232001' => 'vvi', 'GSVIVG01026157001' => 'vvi', 'GSVIVG01027419001' => 'vvi', 'GSVIVG01027631001' => 'vvi', 'GSVIVG01034143001' => 'vvi', 'HanXRQChr03g0093921' => 'han', 'HanXRQChr04g0120001' => 'han', 'HanXRQChr04g0122561' => 'han', 'HanXRQChr09g0246851' => 'han', 'HanXRQChr10g0293311' => 'han', 'HanXRQChr13g0425231' => 'han', 'HanXRQChr16g0532571' => 'han', 'Haze_09050' => 'cav', 'Haze_15715' => 'cav', 'Haze_15716' => 'cav', 'Haze_16803' => 'cav', 'Haze_16850' => 'cav', 'Hma1.2p1_0301F.1_g118655' => 'hma', 'Hma1.2p1_0309F.1_g120590' => 'hma', 'Hma1.2p1_0936F.1_g238900' => 'hma', 'Hma1.2p1_3552F.1_g336740' => 'hma', 'HPP92_003520' => 'vpl', 'HPP92_006628' => 'vpl', 'HPP92_006645' => 'vpl', 'HPP92_014669' => 'vpl', 'HPP92_015077' => 'vpl', 'Hund16742' => 'sun', 'Hund17022' => 'sun', 'Lalb_Chr02g0152131' => 'lal', 'Lalb_Chr05g0225371' => 'lal', 'Lalb_Chr07g0189841' => 'lal', 'Lalb_Chr07g0192961' => 'lal', 'Lalb_Chr12g0208221' => 'lal', 'Lalb_Chr13g0291211' => 'lal', 'Lalb_Chr13g0291781' => 'lal', 'Lalb_Chr18g0044651' => 'lal', 'Lalb_Chr21g0313731' => 'lal', 'Lj1g0022533' => 'lja', 'Lj2A18T50' => 'lonja', 'Lj2A92G93' => 'lonja', 'Lj3A965T73' => 'lonja', 'Lj3g0000673' => 'lja', 'Lj3g0002666' => 'lja', 'Lj4g0016985' => 'lja', 'Lj5g0003625' => 'lja', 'Lj7A529G36' => 'lonja', 'Lj9A569T49' => 'lonja', 'Lj9A604T63' => 'lonja', 'Lsat_1_v5_gn_3_132060' => 'lsa', 'Lsat_1_v5_gn_4_68941' => 'lsa', 'Lsat_1_v5_gn_5_95580' => 'lsa', 'Lsat_1_v5_gn_7_161' => 'lsa', 'Lsat_1_v5_gn_7_7041' => 'lsa', 'Lsat_1_v5_gn_9_33481' => 'lsa', 'Lsat_1_v5_gn_9_68260' => 'lsa', 'Manes.01G073100' => 'mes', 'Manes.01G266300' => 'mes', 'Manes.02G033300' => 'mes', 'Manes.05G017900' => 'mes', 'Manes.05G046100' => 'mes', 'Manes.08G080900' => 'mes', 'Manes.10G049400' => 'mes', 'Mapoly0009s0186' => 'mpo', 'Mapoly0036s0118' => 'mpo', 'Mapoly0101s0046' => 'mpo', 'MBI04_g30218_MAGBIO' => 'mbi', 'MBI04_g35564_MAGBIO' => 'mbi', 'MBI12_g34011_MAGBIO' => 'mbi', 'MBI14_g04655_MAGBIO' => 'mbi', 'MCO07G653' => 'mco', 'MCO10G173' => 'mco', 'MD01G1087100' => 'mdo', 'MD01G1104200' => 'mdo', 'MD02G1205100' => 'mdo', 'MD04G1079200' => 'mdo', 'MD04G1131400' => 'mdo', 'MD07G1121600' => 'mdo', 'MD07G1157300' => 'mdo', 'MD07G1171000' => 'mdo', 'MD12G1144500' => 'mdo', 'Medtr1g094610' => 'mtr', 'Medtr4g021795' => 'mtr', 'Medtr4g023760' => 'mtr', 'Medtr7g118050' => 'mtr', 'MELO3C005582.2' => 'cme', 'MELO3C005989.2' => 'cme', 'MELO3C006192.2' => 'cme', 'MELO3C009248.2' => 'cme', 'MELO3C019817.2' => 'cme', 'Migut.B01625' => 'egut', 'Migut.B01915' => 'egut', 'Migut.F01721' => 'egut', 'Migut.J00314' => 'egut', 'MSTRG.20742' => 'ama', 'MSTRG.8134' => 'ama', 'Nitab4.5_0000096g0010' => 'nta', 'Nitab4.5_0000202g0030' => 'nta', 'Nitab4.5_0000216g0370' => 'nta', 'Nitab4.5_0000457g0230' => 'nta', 'Nitab4.5_0001702g0170' => 'nta', 'Nitab4.5_0003607g0010' => 'nta', 'Nitab4.5_0004917g0020' => 'nta', 'Nitab4.5_0007059g0010' => 'nta', 'Nitab4.5_0007184g0010' => 'nta', 'Nitab4.5_0007346g0020' => 'nta', 'Nn1g00410' => 'nnu', 'Nn1g01252' => 'nnu', 'Nn2g11168' => 'nnu', 'Nn2g13403' => 'nnu', 'Nn2g13760' => 'nnu', 'Nn4g26380' => 'nnu', 'Oeu000806.2' => 'oeu', 'Oeu005788.1' => 'oeu', 'Oeu006900.3' => 'oeu', 'Oeu007797.1' => 'oeu', 'Oeu011932.1' => 'oeu', 'Oeu022739.1' => 'oeu', 'Oeu037918.1' => 'oeu', 'Oeu055490.2' => 'oeu', 'Os01g0844400' => 'osa', 'Os02g0819100' => 'osa', 'Os03g0804300' => 'osa', 'Os05g0458000' => 'osa', 'Os07g0467800' => 'osa', 'Os12g0602200' => 'osa', 'Peaxi162Scf00013g03444' => 'pax', 'Peaxi162Scf00094g01120' => 'pax', 'Peaxi162Scf00191g01211' => 'pax', 'Peaxi162Scf00238g01110' => 'pax', 'Peaxi162Scf00330g00719' => 'pax', 'Peaxi162Scf00627g00018' => 'pax', 'PGR031G2686' => 'pgr', 'PGR042G0809' => 'pgr', 'PGR142G0193' => 'pgr', 'PGSC0003DMG400011066' => 'stu', 'PGSC0003DMG400012041' => 'stu', 'PGSC0003DMG400013678' => 'stu', 'PGSC0003DMG400023477' => 'stu', 'PGSC0003DMG400025956' => 'stu', 'PGSC0003DMG401019151' => 'stu', 'Phvul.006G116400' => 'pvu', 'Phvul.007G097300' => 'pvu', 'Phvul.010G015000' => 'pvu', 'Phvul.010G083900' => 'pvu', 'Potri.001G117100' => 'ptr', 'Potri.002G147300' => 'ptr', 'Potri.003G115600' => 'ptr', 'Potri.006G087400' => 'ptr', 'Potri.010G226100' => 'ptr', 'Potri.014G069200' => 'ptr', 'Potri.014G104000' => 'ptr', 'Potri.016G100200' => 'ptr', 'Pp3c10_20450' => 'ppa', 'Pp3c1_42400' => 'ppa', 'Pp3c3_24390' => 'ppa', 'Pp3c3_2860' => 'ppa', 'PRCOL_00003193' => 'pco', 'Prupe.2G144500' => 'ppe', 'Prupe.2G195700' => 'ppe', 'Prupe.2G209800' => 'ppe', 'Prupe.5G080000' => 'ppe', 'Prupe.6G257900' => 'ppe', 'Psat3g001160' => 'psa', 'Psat6g181880' => 'psa', 'Psat7g233720' => 'psa', 'PSO063G7587' => 'pso', 'PSO339G2145' => 'pso', 'PSO339G3369' => 'pso', 'PSO478G2747' => 'pso', 'PSO513G0140' => 'pso', 'PSO782G1614' => 'pso', 'PSO782G4889' => 'pso', 'PSO782G5485' => 'pso', 'PSO801G0241' => 'pso', 'QL07p048854' => 'qlo', 'QL08p046745' => 'qlo', 'QL08p052606' => 'qlo', 'QL08p053414' => 'qlo', 'QL08p054868' => 'qlo', 'RcHm_v2.0_Chr1g0350251' => 'rch', 'RcHm_v2.0_Chr1g0360851' => 'rch', 'RcHm_v2.0_Chr1g0362791' => 'rch', 'RcHm_v2.0_Chr3g0466281' => 'rch', 'RcHm_v2.0_Chr7g0201481' => 'rch', 'Rhsim01G0148600' => 'rsi', 'Rhsim05G0194400' => 'rsi', 'Rhsim07G0000700' => 'rsi', 'Rhsim07G0000800' => 'rsi', 'Rhsim07G0027900' => 'rsi', 'Rhsim09G0149500' => 'rsi', 'RhsimUnG0186900' => 'rsi', 'Sabra01G0089900' => 'sbr', 'Sabra02G0114700' => 'sbr', 'Sabra02G0116300' => 'sbr', 'Sabra03G0080100' => 'sbr', 'Sabra08G0024300' => 'sbr', 'Sabra10G0174300' => 'sbr', 'Sabra14G0048900' => 'sbr', 'Sabra14G0076500' => 'sbr', 'SalBow5G2513' => 'sbo', 'Sc01g0002300' => 'sci', 'Sc01g0004450' => 'sci', 'Sc06g0001680' => 'sci', 'Sc23g0003580' => 'sci', 'Sed0000913' => 'sed', 'Sed0001655' => 'sed', 'Sed0007745' => 'sed', 'Sed0010951' => 'sed', 'Sed0017599' => 'sed', 'Sed0021405' => 'sed', 'Sed0022810' => 'sed', 'SEGI_07099' => 'sgi', 'SEGI_11931' => 'sgi', 'SEGI_13187' => 'sgi', 'SEGI_29958' => 'sgi', 'SEGI_36351' => 'sgi', 'SGA_v2.0_scaffold126G33770' => 'sas', 'SGA_v2.0_scaffold153G37003' => 'sas', 'SGA_v2.0_scaffold2G01359' => 'sas', 'SGA_v2.0_scaffold5G03064' => 'sas', 'SGA_v2.0_scaffold95G28903' => 'sas', 'SHI12701' => 'shi', 'SHI26410' => 'shi', 'SHI38997' => 'shi', 'SHI53759' => 'shi', 'SHI53886' => 'shi', 'SHI54714' => 'shi', 'SMO011G0041' => 'smo', 'SMO146G0251' => 'smo', 'SMO160G0004' => 'smo', 'SMO174G0057' => 'smo', 'SMO244G0089' => 'smo', 'SMO296G0011' => 'smo', 'Solyc01g091280.3' => 'sly', 'Solyc05g047610.3' => 'sly', 'Solyc05g047640.3' => 'sly', 'Solyc05g055630.3' => 'sly', 'Solyc10g018160.2' => 'sly', 'Solyc10g084820.2' => 'sly', 'Solyc10g086565.2' => 'sly', 'Sopen01g037030' => 'spe', 'Sopen05g027920' => 'spe', 'Sopen05g034070' => 'spe', 'Sopen10g007260' => 'spe', 'Sopen10g034260' => 'spe', 'Sopen10g035950' => 'spe', 'Sp3g07710' => 'spa', 'Sp4g27420' => 'spa', 'Sp5g02450' => 'spa', 'Sp6g01280' => 'spa', 'Sp6g38480' => 'spa', 'Sp7g20780' => 'spa', 'TAR374G1413' => 'tar', 'TAR623G1777' => 'tar', 'TAR629G2370' => 'tar', 'TAR633G1759' => 'tar', 'TAR636G3387' => 'tar', 'THA.LOC104802447' => 'tha', 'THA.LOC104813916' => 'tha', 'THA.LOC104816423' => 'tha', 'THA.LOC104817246' => 'tha', 'THA.LOC104825895' => 'tha', 'Thecc.01G335200' => 'tca', 'Thecc.01G377400' => 'tca', 'Thecc.03G262200' => 'tca', 'Thecc.05G036800' => 'tca', 'Thecc.10G080500' => 'tca', 'Thecc.10G080800' => 'tca', 'Thhalv10001560m.g' => 'esa', 'Thhalv10006120m.g' => 'esa', 'Thhalv10014375m.g' => 'esa', 'Thhalv10021264m.g' => 'esa', 'Thhalv10028856m.g' => 'esa', 'TPR.G1914' => 'tpr', 'TPR.G4757' => 'tpr', 'TPR.G5595' => 'tpr', 'TWI14G0952' => 'twi', 'TWI14G1307' => 'twi', 'TWI38G2143' => 'twi', 'TWI59G0826' => 'twi', 'TWI77G0527' => 'twi', 'TWI81G0150' => 'twi', 'unitig_21.g21018' => 'ugi', 'unitig_26.g9725' => 'ugi', 'unitig_744.g24653' => 'ugi', 'unitig_749.g13778' => 'ugi', 'unitig_899.g15035' => 'ugi', 'vmacro04296' => 'vma', 'vmacro04852' => 'vma', 'vmacro13404' => 'vma', 'vmacro20169' => 'vma', 'vmacro21014' => 'vma', 'VMungo0331G0237' => 'vmu', 'VMungo0331G0706' => 'vmu', 'VMungo0331G1361' => 'vmu', 'VMungo0331G1489' => 'vmu', 'VMungo0540G1037' => 'vmu', 'VMungo0720G2487' => 'vmu', 'VMungo0720G2721' => 'vmu', 'Zm00001eb086860' => 'zma', 'Zm00001eb104760' => 'zma', 'Zm00001eb148220' => 'zma', 'Zm00001eb259030' => 'zma', 'Zm00001eb289590' => 'zma', 'Zm00001eb420150' => 'zma' ) $gf_id = 'HOM05D000968' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000968' ) $data_identifier = 'HOM05D000968' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 19, 'bol' => (int) 9, 'bra' => (int) 12, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 5, 'ccan' => (int) 7, 'cde' => (int) 5, 'cfa' => (int) 8, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 4, 'dca' => (int) 5, 'din' => (int) 5, 'dzi' => (int) 12, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 25, 'fve' => (int) 5, 'gma' => (int) 9, 'ghi' => (int) 18, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 7, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 5, 'sun' => (int) 2, 'lal' => (int) 9, 'lja' => (int) 5, 'lonja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 9, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 2, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 3, 'stu' => (int) 6, 'pvu' => (int) 4, 'ptr' => (int) 8, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 3, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 1, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 5, 'sas' => (int) 5, 'shi' => (int) 6, 'smo' => (int) 6, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 3, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420150' $species_info = array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ) $local_species = 'ccl' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000968', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p31690' => 'bna', 'A03p36040' => 'bna', 'A03p53730' => 'bna', 'A04p01410' => 'bna', 'A05p05420' => 'bna', 'A05p39630' => 'bna', 'A05p39640' => 'bna', 'A09p00970' => 'bna', 'A09p53060' => 'bna', 'A10p31890' => 'bna', 'Aa31LG10G15040' => 'aar', 'Aa31LG1G21090' => 'aar', 'Aa31LG1G26900' => 'aar', 'Aa31LG3G1820' => 'aar', 'Aa31LG5G1100' => 'aar', 'Aa31LG6G4740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2265' => 'aag', 'Actinidia07998' => 'ach', 'Actinidia11266' => 'ach', 'Actinidia12682' => 'ach', 'Actinidia26479' => 'ach', 'Actinidia31406' => 'ach', 'Actinidia32437' => 'ach', 'Actinidia38862' => 'ach', 'Ah.05g174230' => 'amhyb', 'Ah.05g179070' => 'amhyb', 'Ah.05g179090' => 'amhyb', 'Ah.12g059950' => 'amhyb', 'AL3G20480' => 'aly', 'AL4G44520' => 'aly', 'AL5G43110' => 'aly', 'AL6G13890' => 'aly', 'AL6G52620' => 'aly', 'AL7G30830' => 'aly', 'Aqoxy1G00899' => 'aox', 'Aqoxy5G04333' => 'aox', 'Aqoxy7G00641' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3IZ0NN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4EF6AW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W9P8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79GA3M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C43NQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFCU6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G95YVJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCHK29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LU1UG8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX91RN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGB4B1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8DA0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9H7JI' => 'arhy', 'AT3G09320' => 'ath', 'AT3G60800' => 'ath', 'AT4G00840' => 'ath', 'AT4G22750' => 'ath', 'AT5G04270' => 'ath', 'ATR0090G003' => 'atr', 'ATR0559G349' => 'atr', 'ATR0680G261' => 'atr', 'ATR0810G048' => 'atr', 'Atru.chr12.831' => 'acertr', 'Atru.chr5.303' => 'acertr', 'Atru.chr5.748' => 'acertr', 'Atru.chr8.1999' => 'acertr', 'Atru.chr9.1436' => 'acertr', 'AUR62004211' => 'cqu', 'AUR62004548' => 'cqu', 'AUR62013637' => 'cqu', 'AUR62022662' => 'cqu', 'AUR62025777' => 'cqu', 'AUR62042386' => 'cqu', 'BcaB01g02310' => 'bca', 'BcaB01g06062' => 'bca', 'BcaB02g08975' => 'bca', 'BcaB02g08980' => 'bca', 'BcaC01g04228' => 'bca', 'BcaC01g06830' => 'bca', 'BcaC02g10186' => 'bca', 'BcaC02g12214' => 'bca', 'BcaC04g24101' => 'bca', 'BcaC05g29520' => 'bca', 'BcaC05g29661' => 'bca', 'BcaC06g32130' => 'bca', 'BcaC06g32131' => 'bca', 'BcaC07g40601' => 'bca', 'BcaC07g42641' => 'bca', 'BcaNung01038' => 'bca', 'BcaNung01676' => 'bca', 'BcaNung02480' => 'bca', 'BcaNung07376' => 'bca', 'BolC3t16146H' => 'bol', 'BolC3t16637H' => 'bol', 'BolC4t22257H' => 'bol', 'BolC4t24728H' => 'bol', 'BolC5t34517H' => 'bol', 'BolC7t45703H' => 'bol', 'BolC8t51166H' => 'bol', 'BolC9t53038H' => 'bol', 'BolC9t60000H' => 'bol', 'BraA01t01345Z' => 'bra', 'BraA01t01346Z' => 'bra', 'BraA01t01348Z' => 'bra', 'BraA03t12347Z' => 'bra', 'BraA03t12775Z' => 'bra', 'BraA03t14439Z' => 'bra', 'BraA04t15860Z' => 'bra', 'BraA05t19511Z' => 'bra', 'BraA05t22746Z' => 'bra', 'BraA09t35767Z' => 'bra', 'BraA09t40732Z' => 'bra', 'BraA10t45233Z' => 'bra', 'C03p38720' => 'bna', 'C03p43680' => 'bna', 'C04p06350' => 'bna', 'C04p31800' => 'bna', 'C05p58680' => 'bna', 'C07p52110' => 'bna', 'C08p35760' => 'bna', 'C09p01050' => 'bna', 'C09p72600' => 'bna', 'CAN.G106.2' => 'can', 'CAN.G1482.1' => 'can', 'CAN.G324.12' => 'can', 'CAN.G388.20' => 'can', 'CAN.G412.7' => 'can', 'CAN.G694.32' => 'can', 'CAN.G92.12' => 'can', 'CANSAT11G2353' => 'cansat', 'CANSAT21G1398' => 'cansat', 'CANSAT56G2456' => 'cansat', 'CANSAT56G3031' => 'cansat', 'CANSAT56G4539' => 'cansat', 'CARHR083680' => 'chi', 'CARHR171190' => 'chi', 'CARHR209010' => 'chi', 'CARHR229680' => 'chi', 'CARHR249490' => 'chi', 'Carub.0003s0844' => 'cru', 'Carub.0005s2755' => 'cru', 'Carub.0006s0322' => 'cru', 'Carub.0006s3586' => 'cru', 'Carub.0007s1855' => 'cru', 'Ca_07808_v3' => 'car', 'Ca_09535_v3' => 'car', 'Ca_10548_v3' => 'car', 'Ca_19913_v3' => 'car', 'Ca_19916_v3' => 'car', 'Ca_19975_v3' => 'car', 'CBR_g22876' => 'cbr', 'CBR_g22879' => 'cbr', 'CBR_g38491' => 'cbr', 'CBR_g54185' => 'cbr', 'CBR_g54190' => 'cbr', 'Cc02_g11020' => 'ccan', 'Cc02_g23920' => 'ccan', 'Cc02_g39860' => 'ccan', 'Cc02_g39870' => 'ccan', 'Cc03_g06760' => 'ccan', 'Cc06_g02450' => 'ccan', 'Cc09_g09450' => 'ccan', 'CDE02G1959' => 'cde', 'CDE04G0600' => 'cde', 'CDE07G1996' => 'cde', 'CDE07G2078' => 'cde', 'CDE11G0611' => 'cde', 'Cfa001683' => 'cfa', 'Cfa001734' => 'cfa', 'Cfa001737' => 'cfa', 'Cfa003751' => 'cfa', 'Cfa012019' => 'cfa', 'Cfa017353' => 'cfa', 'Cfa017732' => 'cfa', 'Cfa022464' => 'cfa', 'Ciclev10012400m.g' => 'ccl', 'Ciclev10021242m.g' => 'ccl', 'Ciclev10021302m.g' => 'ccl', 'Ciclev10021463m.g' => 'ccl', 'Ciclev10032359m.g' => 'ccl', 'CiPaw.01G081000' => 'cil', 'CiPaw.01G262500' => 'cil', 'CiPaw.01G269800' => 'cil', 'CiPaw.02G168400' => 'cil', 'CiPaw.05G119500' => 'cil', 'CiPaw.11G147300' => 'cil', 'ClCG01G003630' => 'cla', 'ClCG05G000510' => 'cla', 'ClCG05G002300' => 'cla', 'ClCG08G007650' => 'cla', 'ClCG10G021250' => 'cla', 'COL.COLO4_06218' => 'col', 'COL.COLO4_12538' => 'col', 'COL.COLO4_14775' => 'col', 'COL.COLO4_23875' => 'col', 'Cpa.g.sc141.16' => 'cpa', 'Cpa.g.sc169.16' => 'cpa', 'Cpa.g.sc244.4' => 'cpa', 'Cpa.g.sc244.5' => 'cpa', 'Cpa.g.sc29.87' => 'cpa', 'Cpa.g.sc53.115' => 'cpa', 'Cre03.g207502' => 'cre', 'Cre06.g277000' => 'cre', 'Cre09.g394050' => 'cre', 'CsaV3_3G007680' => 'csa', 'CsaV3_3G009710' => 'csa', 'CsaV3_3G034790' => 'csa', 'CsaV3_5G003750' => 'csa', 'CsaV3_6G036620' => 'csa', 'CSS0002288' => 'camsi', 'CSS0011250' => 'camsi', 'CSS0021619' => 'camsi', 'CSS0046701' => 'camsi', 'DCAR_006420' => 'dca', 'DCAR_006865' => 'dca', 'DCAR_008558' => 'dca', 'DCAR_028754' => 'dca', 'DCAR_028755' => 'dca', 'Dinv31218' => 'din', 'Dinv32371' => 'din', 'Dinv34250' => 'din', 'Dinv37156' => 'din', 'Dinv43704' => 'din', 'Duzib093G1811' => 'dzi', 'Duzib106G1622' => 'dzi', 'Duzib114G0504' => 'dzi', 'Duzib128G0338' => 'dzi', 'Duzib128G1577' => 'dzi', 'Duzib133G0104' => 'dzi', 'Duzib133G1080' => 'dzi', 'Duzib138G0324' => 'dzi', 'Duzib138G0394' => 'dzi', 'Duzib205G0122' => 'dzi', 'Duzib268G1020' => 'dzi', 'Duzib268G1359' => 'dzi', 'ECA232G3929' => 'eca', 'ECA236G2210' => 'eca', 'ECA236G2287' => 'eca', 'ECA240G4568' => 'eca', 'ECA247G0894' => 'eca', 'EL10Ac1g00200' => 'bvu', 'EL10Ac1g00886' => 'bvu', 'EL10As1g23091' => 'bvu', 'EL10As1g23092' => 'bvu', 'Eucgr.A01284' => 'egr', 'Eucgr.A01285' => 'egr', 'Eucgr.D02456' => 'egr', 'Eucgr.E00018' => 'egr', 'Eucgr.E01439' => 'egr', 'Eucgr.G02859' => 'egr', 'FAN01G0168' => 'fan', 'FAN01G0453' => 'fan', 'FAN01G2761' => 'fan', 'FAN02G1239' => 'fan', 'FAN03G0645' => 'fan', 'FAN03G2707' => 'fan', 'FAN03G2978' => 'fan', 'FAN04G0227' => 'fan', 'FAN06G0091' => 'fan', 'FAN06G1418' => 'fan', 'FAN06G1512' => 'fan', 'FAN06G1986' => 'fan', 'FAN06G2905' => 'fan', 'FAN06G4325' => 'fan', 'FAN08G0033' => 'fan', 'FAN09G0642' => 'fan', 'FAN10G1763' => 'fan', 'FAN10G2026' => 'fan', 'FAN10G2513' => 'fan', 'FAN10G3402' => 'fan', 'FAN10G3564' => 'fan', 'FAN10G3987' => 'fan', 'FAN13G1490' => 'fan', 'FAN14G5857' => 'fan', 'FAN18G1188' => 'fan', 'FvH4_5g00750' => 'fve', 'FvH4_6g13410' => 'fve', 'FvH4_7g11740' => 'fve', 'FvH4_7g17410' => 'fve', 'FvH4_7g18860' => 'fve', 'Glyma.01G099100' => 'gma', 'Glyma.01G142300' => 'gma', 'Glyma.03G025500' => 'gma', 'Glyma.03G069700' => 'gma', 'Glyma.03G260000' => 'gma', 'Glyma.09G269800' => 'gma', 'Glyma.10G208700' => 'gma', 'Glyma.18G220400' => 'gma', 'Glyma.20G182000' => 'gma', 'Gohir.A01G221726' => 'ghi', 'Gohir.A07G134600' => 'ghi', 'Gohir.A07G146000' => 'ghi', 'Gohir.A08G173900' => 'ghi', 'Gohir.A09G194900' => 'ghi', 'Gohir.A10G204100' => 'ghi', 'Gohir.A11G080600' => 'ghi', 'Gohir.A11G327500' => 'ghi', 'Gohir.A12G101800' => 'ghi', 'Gohir.D01G211200' => 'ghi', 'Gohir.D07G139200' => 'ghi', 'Gohir.D07G152100' => 'ghi', 'Gohir.D08G192600' => 'ghi', 'Gohir.D09G189200' => 'ghi', 'Gohir.D10G212000' => 'ghi', 'Gohir.D11G085200' => 'ghi', 'Gohir.D11G346400' => 'ghi', 'Gohir.D12G104800' => 'ghi', 'Gorai.001G151300' => 'gra', 'Gorai.001G174100' => 'gra', 'Gorai.002G257000' => 'gra', 'Gorai.004G202600' => 'gra', 'Gorai.007G090900' => 'gra', 'Gorai.007G376700' => 'gra', 'Gorai.008G114100' => 'gra', 'Gorai.011G237900' => 'gra', 'GSVIVG01005450001' => 'vvi', 'GSVIVG01016232001' => 'vvi', 'GSVIVG01026157001' => 'vvi', 'GSVIVG01027419001' => 'vvi', 'GSVIVG01027631001' => 'vvi', 'GSVIVG01034143001' => 'vvi', 'HanXRQChr03g0093921' => 'han', 'HanXRQChr04g0120001' => 'han', 'HanXRQChr04g0122561' => 'han', 'HanXRQChr09g0246851' => 'han', 'HanXRQChr10g0293311' => 'han', 'HanXRQChr13g0425231' => 'han', 'HanXRQChr16g0532571' => 'han', 'Haze_09050' => 'cav', 'Haze_15715' => 'cav', 'Haze_15716' => 'cav', 'Haze_16803' => 'cav', 'Haze_16850' => 'cav', 'Hma1.2p1_0301F.1_g118655' => 'hma', 'Hma1.2p1_0309F.1_g120590' => 'hma', 'Hma1.2p1_0936F.1_g238900' => 'hma', 'Hma1.2p1_3552F.1_g336740' => 'hma', 'HPP92_003520' => 'vpl', 'HPP92_006628' => 'vpl', 'HPP92_006645' => 'vpl', 'HPP92_014669' => 'vpl', 'HPP92_015077' => 'vpl', 'Hund16742' => 'sun', 'Hund17022' => 'sun', 'Lalb_Chr02g0152131' => 'lal', 'Lalb_Chr05g0225371' => 'lal', 'Lalb_Chr07g0189841' => 'lal', 'Lalb_Chr07g0192961' => 'lal', 'Lalb_Chr12g0208221' => 'lal', 'Lalb_Chr13g0291211' => 'lal', 'Lalb_Chr13g0291781' => 'lal', 'Lalb_Chr18g0044651' => 'lal', 'Lalb_Chr21g0313731' => 'lal', 'Lj1g0022533' => 'lja', 'Lj2A18T50' => 'lonja', 'Lj2A92G93' => 'lonja', 'Lj3A965T73' => 'lonja', 'Lj3g0000673' => 'lja', 'Lj3g0002666' => 'lja', 'Lj4g0016985' => 'lja', 'Lj5g0003625' => 'lja', 'Lj7A529G36' => 'lonja', 'Lj9A569T49' => 'lonja', 'Lj9A604T63' => 'lonja', 'Lsat_1_v5_gn_3_132060' => 'lsa', 'Lsat_1_v5_gn_4_68941' => 'lsa', 'Lsat_1_v5_gn_5_95580' => 'lsa', 'Lsat_1_v5_gn_7_161' => 'lsa', 'Lsat_1_v5_gn_7_7041' => 'lsa', 'Lsat_1_v5_gn_9_33481' => 'lsa', 'Lsat_1_v5_gn_9_68260' => 'lsa', 'Manes.01G073100' => 'mes', 'Manes.01G266300' => 'mes', 'Manes.02G033300' => 'mes', 'Manes.05G017900' => 'mes', 'Manes.05G046100' => 'mes', 'Manes.08G080900' => 'mes', 'Manes.10G049400' => 'mes', 'Mapoly0009s0186' => 'mpo', 'Mapoly0036s0118' => 'mpo', 'Mapoly0101s0046' => 'mpo', 'MBI04_g30218_MAGBIO' => 'mbi', 'MBI04_g35564_MAGBIO' => 'mbi', 'MBI12_g34011_MAGBIO' => 'mbi', 'MBI14_g04655_MAGBIO' => 'mbi', 'MCO07G653' => 'mco', 'MCO10G173' => 'mco', 'MD01G1087100' => 'mdo', 'MD01G1104200' => 'mdo', 'MD02G1205100' => 'mdo', 'MD04G1079200' => 'mdo', 'MD04G1131400' => 'mdo', 'MD07G1121600' => 'mdo', 'MD07G1157300' => 'mdo', 'MD07G1171000' => 'mdo', 'MD12G1144500' => 'mdo', 'Medtr1g094610' => 'mtr', 'Medtr4g021795' => 'mtr', 'Medtr4g023760' => 'mtr', 'Medtr7g118050' => 'mtr', 'MELO3C005582.2' => 'cme', 'MELO3C005989.2' => 'cme', 'MELO3C006192.2' => 'cme', 'MELO3C009248.2' => 'cme', 'MELO3C019817.2' => 'cme', 'Migut.B01625' => 'egut', 'Migut.B01915' => 'egut', 'Migut.F01721' => 'egut', 'Migut.J00314' => 'egut', 'MSTRG.20742' => 'ama', 'MSTRG.8134' => 'ama', 'Nitab4.5_0000096g0010' => 'nta', 'Nitab4.5_0000202g0030' => 'nta', 'Nitab4.5_0000216g0370' => 'nta', 'Nitab4.5_0000457g0230' => 'nta', 'Nitab4.5_0001702g0170' => 'nta', 'Nitab4.5_0003607g0010' => 'nta', 'Nitab4.5_0004917g0020' => 'nta', 'Nitab4.5_0007059g0010' => 'nta', 'Nitab4.5_0007184g0010' => 'nta', 'Nitab4.5_0007346g0020' => 'nta', 'Nn1g00410' => 'nnu', 'Nn1g01252' => 'nnu', 'Nn2g11168' => 'nnu', 'Nn2g13403' => 'nnu', 'Nn2g13760' => 'nnu', 'Nn4g26380' => 'nnu', 'Oeu000806.2' => 'oeu', 'Oeu005788.1' => 'oeu', 'Oeu006900.3' => 'oeu', 'Oeu007797.1' => 'oeu', 'Oeu011932.1' => 'oeu', 'Oeu022739.1' => 'oeu', 'Oeu037918.1' => 'oeu', 'Oeu055490.2' => 'oeu', 'Os01g0844400' => 'osa', 'Os02g0819100' => 'osa', 'Os03g0804300' => 'osa', 'Os05g0458000' => 'osa', 'Os07g0467800' => 'osa', 'Os12g0602200' => 'osa', 'Peaxi162Scf00013g03444' => 'pax', 'Peaxi162Scf00094g01120' => 'pax', 'Peaxi162Scf00191g01211' => 'pax', 'Peaxi162Scf00238g01110' => 'pax', 'Peaxi162Scf00330g00719' => 'pax', 'Peaxi162Scf00627g00018' => 'pax', 'PGR031G2686' => 'pgr', 'PGR042G0809' => 'pgr', 'PGR142G0193' => 'pgr', 'PGSC0003DMG400011066' => 'stu', 'PGSC0003DMG400012041' => 'stu', 'PGSC0003DMG400013678' => 'stu', 'PGSC0003DMG400023477' => 'stu', 'PGSC0003DMG400025956' => 'stu', 'PGSC0003DMG401019151' => 'stu', 'Phvul.006G116400' => 'pvu', 'Phvul.007G097300' => 'pvu', 'Phvul.010G015000' => 'pvu', 'Phvul.010G083900' => 'pvu', 'Potri.001G117100' => 'ptr', 'Potri.002G147300' => 'ptr', 'Potri.003G115600' => 'ptr', 'Potri.006G087400' => 'ptr', 'Potri.010G226100' => 'ptr', 'Potri.014G069200' => 'ptr', 'Potri.014G104000' => 'ptr', 'Potri.016G100200' => 'ptr', 'Pp3c10_20450' => 'ppa', 'Pp3c1_42400' => 'ppa', 'Pp3c3_24390' => 'ppa', 'Pp3c3_2860' => 'ppa', 'PRCOL_00003193' => 'pco', 'Prupe.2G144500' => 'ppe', 'Prupe.2G195700' => 'ppe', 'Prupe.2G209800' => 'ppe', 'Prupe.5G080000' => 'ppe', 'Prupe.6G257900' => 'ppe', 'Psat3g001160' => 'psa', 'Psat6g181880' => 'psa', 'Psat7g233720' => 'psa', 'PSO063G7587' => 'pso', 'PSO339G2145' => 'pso', 'PSO339G3369' => 'pso', 'PSO478G2747' => 'pso', 'PSO513G0140' => 'pso', 'PSO782G1614' => 'pso', 'PSO782G4889' => 'pso', 'PSO782G5485' => 'pso', 'PSO801G0241' => 'pso', 'QL07p048854' => 'qlo', 'QL08p046745' => 'qlo', 'QL08p052606' => 'qlo', 'QL08p053414' => 'qlo', 'QL08p054868' => 'qlo', 'RcHm_v2.0_Chr1g0350251' => 'rch', 'RcHm_v2.0_Chr1g0360851' => 'rch', 'RcHm_v2.0_Chr1g0362791' => 'rch', 'RcHm_v2.0_Chr3g0466281' => 'rch', 'RcHm_v2.0_Chr7g0201481' => 'rch', 'Rhsim01G0148600' => 'rsi', 'Rhsim05G0194400' => 'rsi', 'Rhsim07G0000700' => 'rsi', 'Rhsim07G0000800' => 'rsi', 'Rhsim07G0027900' => 'rsi', 'Rhsim09G0149500' => 'rsi', 'RhsimUnG0186900' => 'rsi', 'Sabra01G0089900' => 'sbr', 'Sabra02G0114700' => 'sbr', 'Sabra02G0116300' => 'sbr', 'Sabra03G0080100' => 'sbr', 'Sabra08G0024300' => 'sbr', 'Sabra10G0174300' => 'sbr', 'Sabra14G0048900' => 'sbr', 'Sabra14G0076500' => 'sbr', 'SalBow5G2513' => 'sbo', 'Sc01g0002300' => 'sci', 'Sc01g0004450' => 'sci', 'Sc06g0001680' => 'sci', 'Sc23g0003580' => 'sci', 'Sed0000913' => 'sed', 'Sed0001655' => 'sed', 'Sed0007745' => 'sed', 'Sed0010951' => 'sed', 'Sed0017599' => 'sed', 'Sed0021405' => 'sed', 'Sed0022810' => 'sed', 'SEGI_07099' => 'sgi', 'SEGI_11931' => 'sgi', 'SEGI_13187' => 'sgi', 'SEGI_29958' => 'sgi', 'SEGI_36351' => 'sgi', 'SGA_v2.0_scaffold126G33770' => 'sas', 'SGA_v2.0_scaffold153G37003' => 'sas', 'SGA_v2.0_scaffold2G01359' => 'sas', 'SGA_v2.0_scaffold5G03064' => 'sas', 'SGA_v2.0_scaffold95G28903' => 'sas', 'SHI12701' => 'shi', 'SHI26410' => 'shi', 'SHI38997' => 'shi', 'SHI53759' => 'shi', 'SHI53886' => 'shi', 'SHI54714' => 'shi', 'SMO011G0041' => 'smo', 'SMO146G0251' => 'smo', 'SMO160G0004' => 'smo', 'SMO174G0057' => 'smo', 'SMO244G0089' => 'smo', 'SMO296G0011' => 'smo', 'Solyc01g091280.3' => 'sly', 'Solyc05g047610.3' => 'sly', 'Solyc05g047640.3' => 'sly', 'Solyc05g055630.3' => 'sly', 'Solyc10g018160.2' => 'sly', 'Solyc10g084820.2' => 'sly', 'Solyc10g086565.2' => 'sly', 'Sopen01g037030' => 'spe', 'Sopen05g027920' => 'spe', 'Sopen05g034070' => 'spe', 'Sopen10g007260' => 'spe', 'Sopen10g034260' => 'spe', 'Sopen10g035950' => 'spe', 'Sp3g07710' => 'spa', 'Sp4g27420' => 'spa', 'Sp5g02450' => 'spa', 'Sp6g01280' => 'spa', 'Sp6g38480' => 'spa', 'Sp7g20780' => 'spa', 'TAR374G1413' => 'tar', 'TAR623G1777' => 'tar', 'TAR629G2370' => 'tar', 'TAR633G1759' => 'tar', 'TAR636G3387' => 'tar', 'THA.LOC104802447' => 'tha', 'THA.LOC104813916' => 'tha', 'THA.LOC104816423' => 'tha', 'THA.LOC104817246' => 'tha', 'THA.LOC104825895' => 'tha', 'Thecc.01G335200' => 'tca', 'Thecc.01G377400' => 'tca', 'Thecc.03G262200' => 'tca', 'Thecc.05G036800' => 'tca', 'Thecc.10G080500' => 'tca', 'Thecc.10G080800' => 'tca', 'Thhalv10001560m.g' => 'esa', 'Thhalv10006120m.g' => 'esa', 'Thhalv10014375m.g' => 'esa', 'Thhalv10021264m.g' => 'esa', 'Thhalv10028856m.g' => 'esa', 'TPR.G1914' => 'tpr', 'TPR.G4757' => 'tpr', 'TPR.G5595' => 'tpr', 'TWI14G0952' => 'twi', 'TWI14G1307' => 'twi', 'TWI38G2143' => 'twi', 'TWI59G0826' => 'twi', 'TWI77G0527' => 'twi', 'TWI81G0150' => 'twi', 'unitig_21.g21018' => 'ugi', 'unitig_26.g9725' => 'ugi', 'unitig_744.g24653' => 'ugi', 'unitig_749.g13778' => 'ugi', 'unitig_899.g15035' => 'ugi', 'vmacro04296' => 'vma', 'vmacro04852' => 'vma', 'vmacro13404' => 'vma', 'vmacro20169' => 'vma', 'vmacro21014' => 'vma', 'VMungo0331G0237' => 'vmu', 'VMungo0331G0706' => 'vmu', 'VMungo0331G1361' => 'vmu', 'VMungo0331G1489' => 'vmu', 'VMungo0540G1037' => 'vmu', 'VMungo0720G2487' => 'vmu', 'VMungo0720G2721' => 'vmu', 'Zm00001eb086860' => 'zma', 'Zm00001eb104760' => 'zma', 'Zm00001eb148220' => 'zma', 'Zm00001eb259030' => 'zma', 'Zm00001eb289590' => 'zma', 'Zm00001eb420150' => 'zma' ), 'gf_id' => 'HOM05D000968', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000968' ), 'data_identifier' => 'HOM05D000968', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000968', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p31690' => 'bna', 'A03p36040' => 'bna', 'A03p53730' => 'bna', 'A04p01410' => 'bna', 'A05p05420' => 'bna', 'A05p39630' => 'bna', 'A05p39640' => 'bna', 'A09p00970' => 'bna', 'A09p53060' => 'bna', 'A10p31890' => 'bna', 'Aa31LG10G15040' => 'aar', 'Aa31LG1G21090' => 'aar', 'Aa31LG1G26900' => 'aar', 'Aa31LG3G1820' => 'aar', 'Aa31LG5G1100' => 'aar', 'Aa31LG6G4740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2265' => 'aag', 'Actinidia07998' => 'ach', 'Actinidia11266' => 'ach', 'Actinidia12682' => 'ach', 'Actinidia26479' => 'ach', 'Actinidia31406' => 'ach', 'Actinidia32437' => 'ach', 'Actinidia38862' => 'ach', 'Ah.05g174230' => 'amhyb', 'Ah.05g179070' => 'amhyb', 'Ah.05g179090' => 'amhyb', 'Ah.12g059950' => 'amhyb', 'AL3G20480' => 'aly', 'AL4G44520' => 'aly', 'AL5G43110' => 'aly', 'AL6G13890' => 'aly', 'AL6G52620' => 'aly', 'AL7G30830' => 'aly', 'Aqoxy1G00899' => 'aox', 'Aqoxy5G04333' => 'aox', 'Aqoxy7G00641' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3IZ0NN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4EF6AW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W9P8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79GA3M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C43NQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFCU6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G95YVJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCHK29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LU1UG8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX91RN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGB4B1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8DA0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9H7JI' => 'arhy', 'AT3G09320' => 'ath', 'AT3G60800' => 'ath', 'AT4G00840' => 'ath', 'AT4G22750' => 'ath', 'AT5G04270' => 'ath', 'ATR0090G003' => 'atr', 'ATR0559G349' => 'atr', 'ATR0680G261' => 'atr', 'ATR0810G048' => 'atr', 'Atru.chr12.831' => 'acertr', 'Atru.chr5.303' => 'acertr', 'Atru.chr5.748' => 'acertr', 'Atru.chr8.1999' => 'acertr', 'Atru.chr9.1436' => 'acertr', 'AUR62004211' => 'cqu', 'AUR62004548' => 'cqu', 'AUR62013637' => 'cqu', 'AUR62022662' => 'cqu', 'AUR62025777' => 'cqu', 'AUR62042386' => 'cqu', 'BcaB01g02310' => 'bca', 'BcaB01g06062' => 'bca', 'BcaB02g08975' => 'bca', 'BcaB02g08980' => 'bca', 'BcaC01g04228' => 'bca', 'BcaC01g06830' => 'bca', 'BcaC02g10186' => 'bca', 'BcaC02g12214' => 'bca', 'BcaC04g24101' => 'bca', 'BcaC05g29520' => 'bca', 'BcaC05g29661' => 'bca', 'BcaC06g32130' => 'bca', 'BcaC06g32131' => 'bca', 'BcaC07g40601' => 'bca', 'BcaC07g42641' => 'bca', 'BcaNung01038' => 'bca', 'BcaNung01676' => 'bca', 'BcaNung02480' => 'bca', 'BcaNung07376' => 'bca', 'BolC3t16146H' => 'bol', 'BolC3t16637H' => 'bol', 'BolC4t22257H' => 'bol', 'BolC4t24728H' => 'bol', 'BolC5t34517H' => 'bol', 'BolC7t45703H' => 'bol', 'BolC8t51166H' => 'bol', 'BolC9t53038H' => 'bol', 'BolC9t60000H' => 'bol', 'BraA01t01345Z' => 'bra', 'BraA01t01346Z' => 'bra', 'BraA01t01348Z' => 'bra', 'BraA03t12347Z' => 'bra', 'BraA03t12775Z' => 'bra', 'BraA03t14439Z' => 'bra', 'BraA04t15860Z' => 'bra', 'BraA05t19511Z' => 'bra', 'BraA05t22746Z' => 'bra', 'BraA09t35767Z' => 'bra', 'BraA09t40732Z' => 'bra', 'BraA10t45233Z' => 'bra', 'C03p38720' => 'bna', 'C03p43680' => 'bna', 'C04p06350' => 'bna', 'C04p31800' => 'bna', 'C05p58680' => 'bna', 'C07p52110' => 'bna', 'C08p35760' => 'bna', 'C09p01050' => 'bna', 'C09p72600' => 'bna', 'CAN.G106.2' => 'can', 'CAN.G1482.1' => 'can', 'CAN.G324.12' => 'can', 'CAN.G388.20' => 'can', 'CAN.G412.7' => 'can', 'CAN.G694.32' => 'can', 'CAN.G92.12' => 'can', 'CANSAT11G2353' => 'cansat', 'CANSAT21G1398' => 'cansat', 'CANSAT56G2456' => 'cansat', 'CANSAT56G3031' => 'cansat', 'CANSAT56G4539' => 'cansat', 'CARHR083680' => 'chi', 'CARHR171190' => 'chi', 'CARHR209010' => 'chi', 'CARHR229680' => 'chi', 'CARHR249490' => 'chi', 'Carub.0003s0844' => 'cru', 'Carub.0005s2755' => 'cru', 'Carub.0006s0322' => 'cru', 'Carub.0006s3586' => 'cru', 'Carub.0007s1855' => 'cru', 'Ca_07808_v3' => 'car', 'Ca_09535_v3' => 'car', 'Ca_10548_v3' => 'car', 'Ca_19913_v3' => 'car', 'Ca_19916_v3' => 'car', 'Ca_19975_v3' => 'car', 'CBR_g22876' => 'cbr', 'CBR_g22879' => 'cbr', 'CBR_g38491' => 'cbr', 'CBR_g54185' => 'cbr', 'CBR_g54190' => 'cbr', 'Cc02_g11020' => 'ccan', 'Cc02_g23920' => 'ccan', 'Cc02_g39860' => 'ccan', 'Cc02_g39870' => 'ccan', 'Cc03_g06760' => 'ccan', 'Cc06_g02450' => 'ccan', 'Cc09_g09450' => 'ccan', 'CDE02G1959' => 'cde', 'CDE04G0600' => 'cde', 'CDE07G1996' => 'cde', 'CDE07G2078' => 'cde', 'CDE11G0611' => 'cde', 'Cfa001683' => 'cfa', 'Cfa001734' => 'cfa', 'Cfa001737' => 'cfa', 'Cfa003751' => 'cfa', 'Cfa012019' => 'cfa', 'Cfa017353' => 'cfa', 'Cfa017732' => 'cfa', 'Cfa022464' => 'cfa', 'Ciclev10012400m.g' => 'ccl', 'Ciclev10021242m.g' => 'ccl', 'Ciclev10021302m.g' => 'ccl', 'Ciclev10021463m.g' => 'ccl', 'Ciclev10032359m.g' => 'ccl', 'CiPaw.01G081000' => 'cil', 'CiPaw.01G262500' => 'cil', 'CiPaw.01G269800' => 'cil', 'CiPaw.02G168400' => 'cil', 'CiPaw.05G119500' => 'cil', 'CiPaw.11G147300' => 'cil', 'ClCG01G003630' => 'cla', 'ClCG05G000510' => 'cla', 'ClCG05G002300' => 'cla', 'ClCG08G007650' => 'cla', 'ClCG10G021250' => 'cla', 'COL.COLO4_06218' => 'col', 'COL.COLO4_12538' => 'col', 'COL.COLO4_14775' => 'col', 'COL.COLO4_23875' => 'col', 'Cpa.g.sc141.16' => 'cpa', 'Cpa.g.sc169.16' => 'cpa', 'Cpa.g.sc244.4' => 'cpa', 'Cpa.g.sc244.5' => 'cpa', 'Cpa.g.sc29.87' => 'cpa', 'Cpa.g.sc53.115' => 'cpa', 'Cre03.g207502' => 'cre', 'Cre06.g277000' => 'cre', 'Cre09.g394050' => 'cre', 'CsaV3_3G007680' => 'csa', 'CsaV3_3G009710' => 'csa', 'CsaV3_3G034790' => 'csa', 'CsaV3_5G003750' => 'csa', 'CsaV3_6G036620' => 'csa', 'CSS0002288' => 'camsi', 'CSS0011250' => 'camsi', 'CSS0021619' => 'camsi', 'CSS0046701' => 'camsi', 'DCAR_006420' => 'dca', 'DCAR_006865' => 'dca', 'DCAR_008558' => 'dca', 'DCAR_028754' => 'dca', 'DCAR_028755' => 'dca', 'Dinv31218' => 'din', 'Dinv32371' => 'din', 'Dinv34250' => 'din', 'Dinv37156' => 'din', 'Dinv43704' => 'din', 'Duzib093G1811' => 'dzi', 'Duzib106G1622' => 'dzi', 'Duzib114G0504' => 'dzi', 'Duzib128G0338' => 'dzi', 'Duzib128G1577' => 'dzi', 'Duzib133G0104' => 'dzi', 'Duzib133G1080' => 'dzi', 'Duzib138G0324' => 'dzi', 'Duzib138G0394' => 'dzi', 'Duzib205G0122' => 'dzi', 'Duzib268G1020' => 'dzi', 'Duzib268G1359' => 'dzi', 'ECA232G3929' => 'eca', 'ECA236G2210' => 'eca', 'ECA236G2287' => 'eca', 'ECA240G4568' => 'eca', 'ECA247G0894' => 'eca', 'EL10Ac1g00200' => 'bvu', 'EL10Ac1g00886' => 'bvu', 'EL10As1g23091' => 'bvu', 'EL10As1g23092' => 'bvu', 'Eucgr.A01284' => 'egr', 'Eucgr.A01285' => 'egr', 'Eucgr.D02456' => 'egr', 'Eucgr.E00018' => 'egr', 'Eucgr.E01439' => 'egr', 'Eucgr.G02859' => 'egr', 'FAN01G0168' => 'fan', 'FAN01G0453' => 'fan', 'FAN01G2761' => 'fan', 'FAN02G1239' => 'fan', 'FAN03G0645' => 'fan', 'FAN03G2707' => 'fan', 'FAN03G2978' => 'fan', 'FAN04G0227' => 'fan', 'FAN06G0091' => 'fan', 'FAN06G1418' => 'fan', 'FAN06G1512' => 'fan', 'FAN06G1986' => 'fan', 'FAN06G2905' => 'fan', 'FAN06G4325' => 'fan', 'FAN08G0033' => 'fan', 'FAN09G0642' => 'fan', 'FAN10G1763' => 'fan', 'FAN10G2026' => 'fan', 'FAN10G2513' => 'fan', 'FAN10G3402' => 'fan', 'FAN10G3564' => 'fan', 'FAN10G3987' => 'fan', 'FAN13G1490' => 'fan', 'FAN14G5857' => 'fan', 'FAN18G1188' => 'fan', 'FvH4_5g00750' => 'fve', 'FvH4_6g13410' => 'fve', 'FvH4_7g11740' => 'fve', 'FvH4_7g17410' => 'fve', 'FvH4_7g18860' => 'fve', 'Glyma.01G099100' => 'gma', 'Glyma.01G142300' => 'gma', 'Glyma.03G025500' => 'gma', 'Glyma.03G069700' => 'gma', 'Glyma.03G260000' => 'gma', 'Glyma.09G269800' => 'gma', 'Glyma.10G208700' => 'gma', 'Glyma.18G220400' => 'gma', 'Glyma.20G182000' => 'gma', 'Gohir.A01G221726' => 'ghi', 'Gohir.A07G134600' => 'ghi', 'Gohir.A07G146000' => 'ghi', 'Gohir.A08G173900' => 'ghi', 'Gohir.A09G194900' => 'ghi', 'Gohir.A10G204100' => 'ghi', 'Gohir.A11G080600' => 'ghi', 'Gohir.A11G327500' => 'ghi', 'Gohir.A12G101800' => 'ghi', 'Gohir.D01G211200' => 'ghi', 'Gohir.D07G139200' => 'ghi', 'Gohir.D07G152100' => 'ghi', 'Gohir.D08G192600' => 'ghi', 'Gohir.D09G189200' => 'ghi', 'Gohir.D10G212000' => 'ghi', 'Gohir.D11G085200' => 'ghi', 'Gohir.D11G346400' => 'ghi', 'Gohir.D12G104800' => 'ghi', 'Gorai.001G151300' => 'gra', 'Gorai.001G174100' => 'gra', 'Gorai.002G257000' => 'gra', 'Gorai.004G202600' => 'gra', 'Gorai.007G090900' => 'gra', 'Gorai.007G376700' => 'gra', 'Gorai.008G114100' => 'gra', 'Gorai.011G237900' => 'gra', 'GSVIVG01005450001' => 'vvi', 'GSVIVG01016232001' => 'vvi', 'GSVIVG01026157001' => 'vvi', 'GSVIVG01027419001' => 'vvi', 'GSVIVG01027631001' => 'vvi', 'GSVIVG01034143001' => 'vvi', 'HanXRQChr03g0093921' => 'han', 'HanXRQChr04g0120001' => 'han', 'HanXRQChr04g0122561' => 'han', 'HanXRQChr09g0246851' => 'han', 'HanXRQChr10g0293311' => 'han', 'HanXRQChr13g0425231' => 'han', 'HanXRQChr16g0532571' => 'han', 'Haze_09050' => 'cav', 'Haze_15715' => 'cav', 'Haze_15716' => 'cav', 'Haze_16803' => 'cav', 'Haze_16850' => 'cav', 'Hma1.2p1_0301F.1_g118655' => 'hma', 'Hma1.2p1_0309F.1_g120590' => 'hma', 'Hma1.2p1_0936F.1_g238900' => 'hma', 'Hma1.2p1_3552F.1_g336740' => 'hma', 'HPP92_003520' => 'vpl', 'HPP92_006628' => 'vpl', 'HPP92_006645' => 'vpl', 'HPP92_014669' => 'vpl', 'HPP92_015077' => 'vpl', 'Hund16742' => 'sun', 'Hund17022' => 'sun', 'Lalb_Chr02g0152131' => 'lal', 'Lalb_Chr05g0225371' => 'lal', 'Lalb_Chr07g0189841' => 'lal', 'Lalb_Chr07g0192961' => 'lal', 'Lalb_Chr12g0208221' => 'lal', 'Lalb_Chr13g0291211' => 'lal', 'Lalb_Chr13g0291781' => 'lal', 'Lalb_Chr18g0044651' => 'lal', 'Lalb_Chr21g0313731' => 'lal', 'Lj1g0022533' => 'lja', 'Lj2A18T50' => 'lonja', 'Lj2A92G93' => 'lonja', 'Lj3A965T73' => 'lonja', 'Lj3g0000673' => 'lja', 'Lj3g0002666' => 'lja', 'Lj4g0016985' => 'lja', 'Lj5g0003625' => 'lja', 'Lj7A529G36' => 'lonja', 'Lj9A569T49' => 'lonja', 'Lj9A604T63' => 'lonja', 'Lsat_1_v5_gn_3_132060' => 'lsa', 'Lsat_1_v5_gn_4_68941' => 'lsa', 'Lsat_1_v5_gn_5_95580' => 'lsa', 'Lsat_1_v5_gn_7_161' => 'lsa', 'Lsat_1_v5_gn_7_7041' => 'lsa', 'Lsat_1_v5_gn_9_33481' => 'lsa', 'Lsat_1_v5_gn_9_68260' => 'lsa', 'Manes.01G073100' => 'mes', 'Manes.01G266300' => 'mes', 'Manes.02G033300' => 'mes', 'Manes.05G017900' => 'mes', 'Manes.05G046100' => 'mes', 'Manes.08G080900' => 'mes', 'Manes.10G049400' => 'mes', 'Mapoly0009s0186' => 'mpo', 'Mapoly0036s0118' => 'mpo', 'Mapoly0101s0046' => 'mpo', 'MBI04_g30218_MAGBIO' => 'mbi', 'MBI04_g35564_MAGBIO' => 'mbi', 'MBI12_g34011_MAGBIO' => 'mbi', 'MBI14_g04655_MAGBIO' => 'mbi', 'MCO07G653' => 'mco', 'MCO10G173' => 'mco', 'MD01G1087100' => 'mdo', 'MD01G1104200' => 'mdo', 'MD02G1205100' => 'mdo', 'MD04G1079200' => 'mdo', 'MD04G1131400' => 'mdo', 'MD07G1121600' => 'mdo', 'MD07G1157300' => 'mdo', 'MD07G1171000' => 'mdo', 'MD12G1144500' => 'mdo', 'Medtr1g094610' => 'mtr', 'Medtr4g021795' => 'mtr', 'Medtr4g023760' => 'mtr', 'Medtr7g118050' => 'mtr', 'MELO3C005582.2' => 'cme', 'MELO3C005989.2' => 'cme', 'MELO3C006192.2' => 'cme', 'MELO3C009248.2' => 'cme', 'MELO3C019817.2' => 'cme', 'Migut.B01625' => 'egut', 'Migut.B01915' => 'egut', 'Migut.F01721' => 'egut', 'Migut.J00314' => 'egut', 'MSTRG.20742' => 'ama', 'MSTRG.8134' => 'ama', 'Nitab4.5_0000096g0010' => 'nta', 'Nitab4.5_0000202g0030' => 'nta', 'Nitab4.5_0000216g0370' => 'nta', 'Nitab4.5_0000457g0230' => 'nta', 'Nitab4.5_0001702g0170' => 'nta', 'Nitab4.5_0003607g0010' => 'nta', 'Nitab4.5_0004917g0020' => 'nta', 'Nitab4.5_0007059g0010' => 'nta', 'Nitab4.5_0007184g0010' => 'nta', 'Nitab4.5_0007346g0020' => 'nta', 'Nn1g00410' => 'nnu', 'Nn1g01252' => 'nnu', 'Nn2g11168' => 'nnu', 'Nn2g13403' => 'nnu', 'Nn2g13760' => 'nnu', 'Nn4g26380' => 'nnu', 'Oeu000806.2' => 'oeu', 'Oeu005788.1' => 'oeu', 'Oeu006900.3' => 'oeu', 'Oeu007797.1' => 'oeu', 'Oeu011932.1' => 'oeu', 'Oeu022739.1' => 'oeu', 'Oeu037918.1' => 'oeu', 'Oeu055490.2' => 'oeu', 'Os01g0844400' => 'osa', 'Os02g0819100' => 'osa', 'Os03g0804300' => 'osa', 'Os05g0458000' => 'osa', 'Os07g0467800' => 'osa', 'Os12g0602200' => 'osa', 'Peaxi162Scf00013g03444' => 'pax', 'Peaxi162Scf00094g01120' => 'pax', 'Peaxi162Scf00191g01211' => 'pax', 'Peaxi162Scf00238g01110' => 'pax', 'Peaxi162Scf00330g00719' => 'pax', 'Peaxi162Scf00627g00018' => 'pax', 'PGR031G2686' => 'pgr', 'PGR042G0809' => 'pgr', 'PGR142G0193' => 'pgr', 'PGSC0003DMG400011066' => 'stu', 'PGSC0003DMG400012041' => 'stu', 'PGSC0003DMG400013678' => 'stu', 'PGSC0003DMG400023477' => 'stu', 'PGSC0003DMG400025956' => 'stu', 'PGSC0003DMG401019151' => 'stu', 'Phvul.006G116400' => 'pvu', 'Phvul.007G097300' => 'pvu', 'Phvul.010G015000' => 'pvu', 'Phvul.010G083900' => 'pvu', 'Potri.001G117100' => 'ptr', 'Potri.002G147300' => 'ptr', 'Potri.003G115600' => 'ptr', 'Potri.006G087400' => 'ptr', 'Potri.010G226100' => 'ptr', 'Potri.014G069200' => 'ptr', 'Potri.014G104000' => 'ptr', 'Potri.016G100200' => 'ptr', 'Pp3c10_20450' => 'ppa', 'Pp3c1_42400' => 'ppa', 'Pp3c3_24390' => 'ppa', 'Pp3c3_2860' => 'ppa', 'PRCOL_00003193' => 'pco', 'Prupe.2G144500' => 'ppe', 'Prupe.2G195700' => 'ppe', 'Prupe.2G209800' => 'ppe', 'Prupe.5G080000' => 'ppe', 'Prupe.6G257900' => 'ppe', 'Psat3g001160' => 'psa', 'Psat6g181880' => 'psa', 'Psat7g233720' => 'psa', 'PSO063G7587' => 'pso', 'PSO339G2145' => 'pso', 'PSO339G3369' => 'pso', 'PSO478G2747' => 'pso', 'PSO513G0140' => 'pso', 'PSO782G1614' => 'pso', 'PSO782G4889' => 'pso', 'PSO782G5485' => 'pso', 'PSO801G0241' => 'pso', 'QL07p048854' => 'qlo', 'QL08p046745' => 'qlo', 'QL08p052606' => 'qlo', 'QL08p053414' => 'qlo', 'QL08p054868' => 'qlo', 'RcHm_v2.0_Chr1g0350251' => 'rch', 'RcHm_v2.0_Chr1g0360851' => 'rch', 'RcHm_v2.0_Chr1g0362791' => 'rch', 'RcHm_v2.0_Chr3g0466281' => 'rch', 'RcHm_v2.0_Chr7g0201481' => 'rch', 'Rhsim01G0148600' => 'rsi', 'Rhsim05G0194400' => 'rsi', 'Rhsim07G0000700' => 'rsi', 'Rhsim07G0000800' => 'rsi', 'Rhsim07G0027900' => 'rsi', 'Rhsim09G0149500' => 'rsi', 'RhsimUnG0186900' => 'rsi', 'Sabra01G0089900' => 'sbr', 'Sabra02G0114700' => 'sbr', 'Sabra02G0116300' => 'sbr', 'Sabra03G0080100' => 'sbr', 'Sabra08G0024300' => 'sbr', 'Sabra10G0174300' => 'sbr', 'Sabra14G0048900' => 'sbr', 'Sabra14G0076500' => 'sbr', 'SalBow5G2513' => 'sbo', 'Sc01g0002300' => 'sci', 'Sc01g0004450' => 'sci', 'Sc06g0001680' => 'sci', 'Sc23g0003580' => 'sci', 'Sed0000913' => 'sed', 'Sed0001655' => 'sed', 'Sed0007745' => 'sed', 'Sed0010951' => 'sed', 'Sed0017599' => 'sed', 'Sed0021405' => 'sed', 'Sed0022810' => 'sed', 'SEGI_07099' => 'sgi', 'SEGI_11931' => 'sgi', 'SEGI_13187' => 'sgi', 'SEGI_29958' => 'sgi', 'SEGI_36351' => 'sgi', 'SGA_v2.0_scaffold126G33770' => 'sas', 'SGA_v2.0_scaffold153G37003' => 'sas', 'SGA_v2.0_scaffold2G01359' => 'sas', 'SGA_v2.0_scaffold5G03064' => 'sas', 'SGA_v2.0_scaffold95G28903' => 'sas', 'SHI12701' => 'shi', 'SHI26410' => 'shi', 'SHI38997' => 'shi', 'SHI53759' => 'shi', 'SHI53886' => 'shi', 'SHI54714' => 'shi', 'SMO011G0041' => 'smo', 'SMO146G0251' => 'smo', 'SMO160G0004' => 'smo', 'SMO174G0057' => 'smo', 'SMO244G0089' => 'smo', 'SMO296G0011' => 'smo', 'Solyc01g091280.3' => 'sly', 'Solyc05g047610.3' => 'sly', 'Solyc05g047640.3' => 'sly', 'Solyc05g055630.3' => 'sly', 'Solyc10g018160.2' => 'sly', 'Solyc10g084820.2' => 'sly', 'Solyc10g086565.2' => 'sly', 'Sopen01g037030' => 'spe', 'Sopen05g027920' => 'spe', 'Sopen05g034070' => 'spe', 'Sopen10g007260' => 'spe', 'Sopen10g034260' => 'spe', 'Sopen10g035950' => 'spe', 'Sp3g07710' => 'spa', 'Sp4g27420' => 'spa', 'Sp5g02450' => 'spa', 'Sp6g01280' => 'spa', 'Sp6g38480' => 'spa', 'Sp7g20780' => 'spa', 'TAR374G1413' => 'tar', 'TAR623G1777' => 'tar', 'TAR629G2370' => 'tar', 'TAR633G1759' => 'tar', 'TAR636G3387' => 'tar', 'THA.LOC104802447' => 'tha', 'THA.LOC104813916' => 'tha', 'THA.LOC104816423' => 'tha', 'THA.LOC104817246' => 'tha', 'THA.LOC104825895' => 'tha', 'Thecc.01G335200' => 'tca', 'Thecc.01G377400' => 'tca', 'Thecc.03G262200' => 'tca', 'Thecc.05G036800' => 'tca', 'Thecc.10G080500' => 'tca', 'Thecc.10G080800' => 'tca', 'Thhalv10001560m.g' => 'esa', 'Thhalv10006120m.g' => 'esa', 'Thhalv10014375m.g' => 'esa', 'Thhalv10021264m.g' => 'esa', 'Thhalv10028856m.g' => 'esa', 'TPR.G1914' => 'tpr', 'TPR.G4757' => 'tpr', 'TPR.G5595' => 'tpr', 'TWI14G0952' => 'twi', 'TWI14G1307' => 'twi', 'TWI38G2143' => 'twi', 'TWI59G0826' => 'twi', 'TWI77G0527' => 'twi', 'TWI81G0150' => 'twi', 'unitig_21.g21018' => 'ugi', 'unitig_26.g9725' => 'ugi', 'unitig_744.g24653' => 'ugi', 'unitig_749.g13778' => 'ugi', 'unitig_899.g15035' => 'ugi', 'vmacro04296' => 'vma', 'vmacro04852' => 'vma', 'vmacro13404' => 'vma', 'vmacro20169' => 'vma', 'vmacro21014' => 'vma', 'VMungo0331G0237' => 'vmu', 'VMungo0331G0706' => 'vmu', 'VMungo0331G1361' => 'vmu', 'VMungo0331G1489' => 'vmu', 'VMungo0540G1037' => 'vmu', 'VMungo0720G2487' => 'vmu', 'VMungo0720G2721' => 'vmu', 'Zm00001eb086860' => 'zma', 'Zm00001eb104760' => 'zma', 'Zm00001eb148220' => 'zma', 'Zm00001eb259030' => 'zma', 'Zm00001eb289590' => 'zma', 'Zm00001eb420150' => 'zma' ) $gf_id = 'HOM05D000968' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000968' ) $data_identifier = 'HOM05D000968' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 19, 'bol' => (int) 9, 'bra' => (int) 12, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 5, 'ccan' => (int) 7, 'cde' => (int) 5, 'cfa' => (int) 8, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 4, 'dca' => (int) 5, 'din' => (int) 5, 'dzi' => (int) 12, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 25, 'fve' => (int) 5, 'gma' => (int) 9, 'ghi' => (int) 18, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 7, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 5, 'sun' => (int) 2, 'lal' => (int) 9, 'lja' => (int) 5, 'lonja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 9, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 2, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 3, 'stu' => (int) 6, 'pvu' => (int) 4, 'ptr' => (int) 8, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 3, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 1, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 5, 'sas' => (int) 5, 'shi' => (int) 6, 'smo' => (int) 6, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 3, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420150' $species_info = array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ) $local_species = 'ccl' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000968', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p31690' => 'bna', 'A03p36040' => 'bna', 'A03p53730' => 'bna', 'A04p01410' => 'bna', 'A05p05420' => 'bna', 'A05p39630' => 'bna', 'A05p39640' => 'bna', 'A09p00970' => 'bna', 'A09p53060' => 'bna', 'A10p31890' => 'bna', 'Aa31LG10G15040' => 'aar', 'Aa31LG1G21090' => 'aar', 'Aa31LG1G26900' => 'aar', 'Aa31LG3G1820' => 'aar', 'Aa31LG5G1100' => 'aar', 'Aa31LG6G4740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2265' => 'aag', 'Actinidia07998' => 'ach', 'Actinidia11266' => 'ach', 'Actinidia12682' => 'ach', 'Actinidia26479' => 'ach', 'Actinidia31406' => 'ach', 'Actinidia32437' => 'ach', 'Actinidia38862' => 'ach', 'Ah.05g174230' => 'amhyb', 'Ah.05g179070' => 'amhyb', 'Ah.05g179090' => 'amhyb', 'Ah.12g059950' => 'amhyb', 'AL3G20480' => 'aly', 'AL4G44520' => 'aly', 'AL5G43110' => 'aly', 'AL6G13890' => 'aly', 'AL6G52620' => 'aly', 'AL7G30830' => 'aly', 'Aqoxy1G00899' => 'aox', 'Aqoxy5G04333' => 'aox', 'Aqoxy7G00641' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3IZ0NN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4EF6AW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W9P8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79GA3M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C43NQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFCU6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G95YVJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCHK29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LU1UG8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX91RN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGB4B1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8DA0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9H7JI' => 'arhy', 'AT3G09320' => 'ath', 'AT3G60800' => 'ath', 'AT4G00840' => 'ath', 'AT4G22750' => 'ath', 'AT5G04270' => 'ath', 'ATR0090G003' => 'atr', 'ATR0559G349' => 'atr', 'ATR0680G261' => 'atr', 'ATR0810G048' => 'atr', 'Atru.chr12.831' => 'acertr', 'Atru.chr5.303' => 'acertr', 'Atru.chr5.748' => 'acertr', 'Atru.chr8.1999' => 'acertr', 'Atru.chr9.1436' => 'acertr', 'AUR62004211' => 'cqu', 'AUR62004548' => 'cqu', 'AUR62013637' => 'cqu', 'AUR62022662' => 'cqu', 'AUR62025777' => 'cqu', 'AUR62042386' => 'cqu', 'BcaB01g02310' => 'bca', 'BcaB01g06062' => 'bca', 'BcaB02g08975' => 'bca', 'BcaB02g08980' => 'bca', 'BcaC01g04228' => 'bca', 'BcaC01g06830' => 'bca', 'BcaC02g10186' => 'bca', 'BcaC02g12214' => 'bca', 'BcaC04g24101' => 'bca', 'BcaC05g29520' => 'bca', 'BcaC05g29661' => 'bca', 'BcaC06g32130' => 'bca', 'BcaC06g32131' => 'bca', 'BcaC07g40601' => 'bca', 'BcaC07g42641' => 'bca', 'BcaNung01038' => 'bca', 'BcaNung01676' => 'bca', 'BcaNung02480' => 'bca', 'BcaNung07376' => 'bca', 'BolC3t16146H' => 'bol', 'BolC3t16637H' => 'bol', 'BolC4t22257H' => 'bol', 'BolC4t24728H' => 'bol', 'BolC5t34517H' => 'bol', 'BolC7t45703H' => 'bol', 'BolC8t51166H' => 'bol', 'BolC9t53038H' => 'bol', 'BolC9t60000H' => 'bol', 'BraA01t01345Z' => 'bra', 'BraA01t01346Z' => 'bra', 'BraA01t01348Z' => 'bra', 'BraA03t12347Z' => 'bra', 'BraA03t12775Z' => 'bra', 'BraA03t14439Z' => 'bra', 'BraA04t15860Z' => 'bra', 'BraA05t19511Z' => 'bra', 'BraA05t22746Z' => 'bra', 'BraA09t35767Z' => 'bra', 'BraA09t40732Z' => 'bra', 'BraA10t45233Z' => 'bra', 'C03p38720' => 'bna', 'C03p43680' => 'bna', 'C04p06350' => 'bna', 'C04p31800' => 'bna', 'C05p58680' => 'bna', 'C07p52110' => 'bna', 'C08p35760' => 'bna', 'C09p01050' => 'bna', 'C09p72600' => 'bna', 'CAN.G106.2' => 'can', 'CAN.G1482.1' => 'can', 'CAN.G324.12' => 'can', 'CAN.G388.20' => 'can', 'CAN.G412.7' => 'can', 'CAN.G694.32' => 'can', 'CAN.G92.12' => 'can', 'CANSAT11G2353' => 'cansat', 'CANSAT21G1398' => 'cansat', 'CANSAT56G2456' => 'cansat', 'CANSAT56G3031' => 'cansat', 'CANSAT56G4539' => 'cansat', 'CARHR083680' => 'chi', 'CARHR171190' => 'chi', 'CARHR209010' => 'chi', 'CARHR229680' => 'chi', 'CARHR249490' => 'chi', 'Carub.0003s0844' => 'cru', 'Carub.0005s2755' => 'cru', 'Carub.0006s0322' => 'cru', 'Carub.0006s3586' => 'cru', 'Carub.0007s1855' => 'cru', 'Ca_07808_v3' => 'car', 'Ca_09535_v3' => 'car', 'Ca_10548_v3' => 'car', 'Ca_19913_v3' => 'car', 'Ca_19916_v3' => 'car', 'Ca_19975_v3' => 'car', 'CBR_g22876' => 'cbr', 'CBR_g22879' => 'cbr', 'CBR_g38491' => 'cbr', 'CBR_g54185' => 'cbr', 'CBR_g54190' => 'cbr', 'Cc02_g11020' => 'ccan', 'Cc02_g23920' => 'ccan', 'Cc02_g39860' => 'ccan', 'Cc02_g39870' => 'ccan', 'Cc03_g06760' => 'ccan', 'Cc06_g02450' => 'ccan', 'Cc09_g09450' => 'ccan', 'CDE02G1959' => 'cde', 'CDE04G0600' => 'cde', 'CDE07G1996' => 'cde', 'CDE07G2078' => 'cde', 'CDE11G0611' => 'cde', 'Cfa001683' => 'cfa', 'Cfa001734' => 'cfa', 'Cfa001737' => 'cfa', 'Cfa003751' => 'cfa', 'Cfa012019' => 'cfa', 'Cfa017353' => 'cfa', 'Cfa017732' => 'cfa', 'Cfa022464' => 'cfa', 'Ciclev10012400m.g' => 'ccl', 'Ciclev10021242m.g' => 'ccl', 'Ciclev10021302m.g' => 'ccl', 'Ciclev10021463m.g' => 'ccl', 'Ciclev10032359m.g' => 'ccl', 'CiPaw.01G081000' => 'cil', 'CiPaw.01G262500' => 'cil', 'CiPaw.01G269800' => 'cil', 'CiPaw.02G168400' => 'cil', 'CiPaw.05G119500' => 'cil', 'CiPaw.11G147300' => 'cil', 'ClCG01G003630' => 'cla', 'ClCG05G000510' => 'cla', 'ClCG05G002300' => 'cla', 'ClCG08G007650' => 'cla', 'ClCG10G021250' => 'cla', 'COL.COLO4_06218' => 'col', 'COL.COLO4_12538' => 'col', 'COL.COLO4_14775' => 'col', 'COL.COLO4_23875' => 'col', 'Cpa.g.sc141.16' => 'cpa', 'Cpa.g.sc169.16' => 'cpa', 'Cpa.g.sc244.4' => 'cpa', 'Cpa.g.sc244.5' => 'cpa', 'Cpa.g.sc29.87' => 'cpa', 'Cpa.g.sc53.115' => 'cpa', 'Cre03.g207502' => 'cre', 'Cre06.g277000' => 'cre', 'Cre09.g394050' => 'cre', 'CsaV3_3G007680' => 'csa', 'CsaV3_3G009710' => 'csa', 'CsaV3_3G034790' => 'csa', 'CsaV3_5G003750' => 'csa', 'CsaV3_6G036620' => 'csa', 'CSS0002288' => 'camsi', 'CSS0011250' => 'camsi', 'CSS0021619' => 'camsi', 'CSS0046701' => 'camsi', 'DCAR_006420' => 'dca', 'DCAR_006865' => 'dca', 'DCAR_008558' => 'dca', 'DCAR_028754' => 'dca', 'DCAR_028755' => 'dca', 'Dinv31218' => 'din', 'Dinv32371' => 'din', 'Dinv34250' => 'din', 'Dinv37156' => 'din', 'Dinv43704' => 'din', 'Duzib093G1811' => 'dzi', 'Duzib106G1622' => 'dzi', 'Duzib114G0504' => 'dzi', 'Duzib128G0338' => 'dzi', 'Duzib128G1577' => 'dzi', 'Duzib133G0104' => 'dzi', 'Duzib133G1080' => 'dzi', 'Duzib138G0324' => 'dzi', 'Duzib138G0394' => 'dzi', 'Duzib205G0122' => 'dzi', 'Duzib268G1020' => 'dzi', 'Duzib268G1359' => 'dzi', 'ECA232G3929' => 'eca', 'ECA236G2210' => 'eca', 'ECA236G2287' => 'eca', 'ECA240G4568' => 'eca', 'ECA247G0894' => 'eca', 'EL10Ac1g00200' => 'bvu', 'EL10Ac1g00886' => 'bvu', 'EL10As1g23091' => 'bvu', 'EL10As1g23092' => 'bvu', 'Eucgr.A01284' => 'egr', 'Eucgr.A01285' => 'egr', 'Eucgr.D02456' => 'egr', 'Eucgr.E00018' => 'egr', 'Eucgr.E01439' => 'egr', 'Eucgr.G02859' => 'egr', 'FAN01G0168' => 'fan', 'FAN01G0453' => 'fan', 'FAN01G2761' => 'fan', 'FAN02G1239' => 'fan', 'FAN03G0645' => 'fan', 'FAN03G2707' => 'fan', 'FAN03G2978' => 'fan', 'FAN04G0227' => 'fan', 'FAN06G0091' => 'fan', 'FAN06G1418' => 'fan', 'FAN06G1512' => 'fan', 'FAN06G1986' => 'fan', 'FAN06G2905' => 'fan', 'FAN06G4325' => 'fan', 'FAN08G0033' => 'fan', 'FAN09G0642' => 'fan', 'FAN10G1763' => 'fan', 'FAN10G2026' => 'fan', 'FAN10G2513' => 'fan', 'FAN10G3402' => 'fan', 'FAN10G3564' => 'fan', 'FAN10G3987' => 'fan', 'FAN13G1490' => 'fan', 'FAN14G5857' => 'fan', 'FAN18G1188' => 'fan', 'FvH4_5g00750' => 'fve', 'FvH4_6g13410' => 'fve', 'FvH4_7g11740' => 'fve', 'FvH4_7g17410' => 'fve', 'FvH4_7g18860' => 'fve', 'Glyma.01G099100' => 'gma', 'Glyma.01G142300' => 'gma', 'Glyma.03G025500' => 'gma', 'Glyma.03G069700' => 'gma', 'Glyma.03G260000' => 'gma', 'Glyma.09G269800' => 'gma', 'Glyma.10G208700' => 'gma', 'Glyma.18G220400' => 'gma', 'Glyma.20G182000' => 'gma', 'Gohir.A01G221726' => 'ghi', 'Gohir.A07G134600' => 'ghi', 'Gohir.A07G146000' => 'ghi', 'Gohir.A08G173900' => 'ghi', 'Gohir.A09G194900' => 'ghi', 'Gohir.A10G204100' => 'ghi', 'Gohir.A11G080600' => 'ghi', 'Gohir.A11G327500' => 'ghi', 'Gohir.A12G101800' => 'ghi', 'Gohir.D01G211200' => 'ghi', 'Gohir.D07G139200' => 'ghi', 'Gohir.D07G152100' => 'ghi', 'Gohir.D08G192600' => 'ghi', 'Gohir.D09G189200' => 'ghi', 'Gohir.D10G212000' => 'ghi', 'Gohir.D11G085200' => 'ghi', 'Gohir.D11G346400' => 'ghi', 'Gohir.D12G104800' => 'ghi', 'Gorai.001G151300' => 'gra', 'Gorai.001G174100' => 'gra', 'Gorai.002G257000' => 'gra', 'Gorai.004G202600' => 'gra', 'Gorai.007G090900' => 'gra', 'Gorai.007G376700' => 'gra', 'Gorai.008G114100' => 'gra', 'Gorai.011G237900' => 'gra', 'GSVIVG01005450001' => 'vvi', 'GSVIVG01016232001' => 'vvi', 'GSVIVG01026157001' => 'vvi', 'GSVIVG01027419001' => 'vvi', 'GSVIVG01027631001' => 'vvi', 'GSVIVG01034143001' => 'vvi', 'HanXRQChr03g0093921' => 'han', 'HanXRQChr04g0120001' => 'han', 'HanXRQChr04g0122561' => 'han', 'HanXRQChr09g0246851' => 'han', 'HanXRQChr10g0293311' => 'han', 'HanXRQChr13g0425231' => 'han', 'HanXRQChr16g0532571' => 'han', 'Haze_09050' => 'cav', 'Haze_15715' => 'cav', 'Haze_15716' => 'cav', 'Haze_16803' => 'cav', 'Haze_16850' => 'cav', 'Hma1.2p1_0301F.1_g118655' => 'hma', 'Hma1.2p1_0309F.1_g120590' => 'hma', 'Hma1.2p1_0936F.1_g238900' => 'hma', 'Hma1.2p1_3552F.1_g336740' => 'hma', 'HPP92_003520' => 'vpl', 'HPP92_006628' => 'vpl', 'HPP92_006645' => 'vpl', 'HPP92_014669' => 'vpl', 'HPP92_015077' => 'vpl', 'Hund16742' => 'sun', 'Hund17022' => 'sun', 'Lalb_Chr02g0152131' => 'lal', 'Lalb_Chr05g0225371' => 'lal', 'Lalb_Chr07g0189841' => 'lal', 'Lalb_Chr07g0192961' => 'lal', 'Lalb_Chr12g0208221' => 'lal', 'Lalb_Chr13g0291211' => 'lal', 'Lalb_Chr13g0291781' => 'lal', 'Lalb_Chr18g0044651' => 'lal', 'Lalb_Chr21g0313731' => 'lal', 'Lj1g0022533' => 'lja', 'Lj2A18T50' => 'lonja', 'Lj2A92G93' => 'lonja', 'Lj3A965T73' => 'lonja', 'Lj3g0000673' => 'lja', 'Lj3g0002666' => 'lja', 'Lj4g0016985' => 'lja', 'Lj5g0003625' => 'lja', 'Lj7A529G36' => 'lonja', 'Lj9A569T49' => 'lonja', 'Lj9A604T63' => 'lonja', 'Lsat_1_v5_gn_3_132060' => 'lsa', 'Lsat_1_v5_gn_4_68941' => 'lsa', 'Lsat_1_v5_gn_5_95580' => 'lsa', 'Lsat_1_v5_gn_7_161' => 'lsa', 'Lsat_1_v5_gn_7_7041' => 'lsa', 'Lsat_1_v5_gn_9_33481' => 'lsa', 'Lsat_1_v5_gn_9_68260' => 'lsa', 'Manes.01G073100' => 'mes', 'Manes.01G266300' => 'mes', 'Manes.02G033300' => 'mes', 'Manes.05G017900' => 'mes', 'Manes.05G046100' => 'mes', 'Manes.08G080900' => 'mes', 'Manes.10G049400' => 'mes', 'Mapoly0009s0186' => 'mpo', 'Mapoly0036s0118' => 'mpo', 'Mapoly0101s0046' => 'mpo', 'MBI04_g30218_MAGBIO' => 'mbi', 'MBI04_g35564_MAGBIO' => 'mbi', 'MBI12_g34011_MAGBIO' => 'mbi', 'MBI14_g04655_MAGBIO' => 'mbi', 'MCO07G653' => 'mco', 'MCO10G173' => 'mco', 'MD01G1087100' => 'mdo', 'MD01G1104200' => 'mdo', 'MD02G1205100' => 'mdo', 'MD04G1079200' => 'mdo', 'MD04G1131400' => 'mdo', 'MD07G1121600' => 'mdo', 'MD07G1157300' => 'mdo', 'MD07G1171000' => 'mdo', 'MD12G1144500' => 'mdo', 'Medtr1g094610' => 'mtr', 'Medtr4g021795' => 'mtr', 'Medtr4g023760' => 'mtr', 'Medtr7g118050' => 'mtr', 'MELO3C005582.2' => 'cme', 'MELO3C005989.2' => 'cme', 'MELO3C006192.2' => 'cme', 'MELO3C009248.2' => 'cme', 'MELO3C019817.2' => 'cme', 'Migut.B01625' => 'egut', 'Migut.B01915' => 'egut', 'Migut.F01721' => 'egut', 'Migut.J00314' => 'egut', 'MSTRG.20742' => 'ama', 'MSTRG.8134' => 'ama', 'Nitab4.5_0000096g0010' => 'nta', 'Nitab4.5_0000202g0030' => 'nta', 'Nitab4.5_0000216g0370' => 'nta', 'Nitab4.5_0000457g0230' => 'nta', 'Nitab4.5_0001702g0170' => 'nta', 'Nitab4.5_0003607g0010' => 'nta', 'Nitab4.5_0004917g0020' => 'nta', 'Nitab4.5_0007059g0010' => 'nta', 'Nitab4.5_0007184g0010' => 'nta', 'Nitab4.5_0007346g0020' => 'nta', 'Nn1g00410' => 'nnu', 'Nn1g01252' => 'nnu', 'Nn2g11168' => 'nnu', 'Nn2g13403' => 'nnu', 'Nn2g13760' => 'nnu', 'Nn4g26380' => 'nnu', 'Oeu000806.2' => 'oeu', 'Oeu005788.1' => 'oeu', 'Oeu006900.3' => 'oeu', 'Oeu007797.1' => 'oeu', 'Oeu011932.1' => 'oeu', 'Oeu022739.1' => 'oeu', 'Oeu037918.1' => 'oeu', 'Oeu055490.2' => 'oeu', 'Os01g0844400' => 'osa', 'Os02g0819100' => 'osa', 'Os03g0804300' => 'osa', 'Os05g0458000' => 'osa', 'Os07g0467800' => 'osa', 'Os12g0602200' => 'osa', 'Peaxi162Scf00013g03444' => 'pax', 'Peaxi162Scf00094g01120' => 'pax', 'Peaxi162Scf00191g01211' => 'pax', 'Peaxi162Scf00238g01110' => 'pax', 'Peaxi162Scf00330g00719' => 'pax', 'Peaxi162Scf00627g00018' => 'pax', 'PGR031G2686' => 'pgr', 'PGR042G0809' => 'pgr', 'PGR142G0193' => 'pgr', 'PGSC0003DMG400011066' => 'stu', 'PGSC0003DMG400012041' => 'stu', 'PGSC0003DMG400013678' => 'stu', 'PGSC0003DMG400023477' => 'stu', 'PGSC0003DMG400025956' => 'stu', 'PGSC0003DMG401019151' => 'stu', 'Phvul.006G116400' => 'pvu', 'Phvul.007G097300' => 'pvu', 'Phvul.010G015000' => 'pvu', 'Phvul.010G083900' => 'pvu', 'Potri.001G117100' => 'ptr', 'Potri.002G147300' => 'ptr', 'Potri.003G115600' => 'ptr', 'Potri.006G087400' => 'ptr', 'Potri.010G226100' => 'ptr', 'Potri.014G069200' => 'ptr', 'Potri.014G104000' => 'ptr', 'Potri.016G100200' => 'ptr', 'Pp3c10_20450' => 'ppa', 'Pp3c1_42400' => 'ppa', 'Pp3c3_24390' => 'ppa', 'Pp3c3_2860' => 'ppa', 'PRCOL_00003193' => 'pco', 'Prupe.2G144500' => 'ppe', 'Prupe.2G195700' => 'ppe', 'Prupe.2G209800' => 'ppe', 'Prupe.5G080000' => 'ppe', 'Prupe.6G257900' => 'ppe', 'Psat3g001160' => 'psa', 'Psat6g181880' => 'psa', 'Psat7g233720' => 'psa', 'PSO063G7587' => 'pso', 'PSO339G2145' => 'pso', 'PSO339G3369' => 'pso', 'PSO478G2747' => 'pso', 'PSO513G0140' => 'pso', 'PSO782G1614' => 'pso', 'PSO782G4889' => 'pso', 'PSO782G5485' => 'pso', 'PSO801G0241' => 'pso', 'QL07p048854' => 'qlo', 'QL08p046745' => 'qlo', 'QL08p052606' => 'qlo', 'QL08p053414' => 'qlo', 'QL08p054868' => 'qlo', 'RcHm_v2.0_Chr1g0350251' => 'rch', 'RcHm_v2.0_Chr1g0360851' => 'rch', 'RcHm_v2.0_Chr1g0362791' => 'rch', 'RcHm_v2.0_Chr3g0466281' => 'rch', 'RcHm_v2.0_Chr7g0201481' => 'rch', 'Rhsim01G0148600' => 'rsi', 'Rhsim05G0194400' => 'rsi', 'Rhsim07G0000700' => 'rsi', 'Rhsim07G0000800' => 'rsi', 'Rhsim07G0027900' => 'rsi', 'Rhsim09G0149500' => 'rsi', 'RhsimUnG0186900' => 'rsi', 'Sabra01G0089900' => 'sbr', 'Sabra02G0114700' => 'sbr', 'Sabra02G0116300' => 'sbr', 'Sabra03G0080100' => 'sbr', 'Sabra08G0024300' => 'sbr', 'Sabra10G0174300' => 'sbr', 'Sabra14G0048900' => 'sbr', 'Sabra14G0076500' => 'sbr', 'SalBow5G2513' => 'sbo', 'Sc01g0002300' => 'sci', 'Sc01g0004450' => 'sci', 'Sc06g0001680' => 'sci', 'Sc23g0003580' => 'sci', 'Sed0000913' => 'sed', 'Sed0001655' => 'sed', 'Sed0007745' => 'sed', 'Sed0010951' => 'sed', 'Sed0017599' => 'sed', 'Sed0021405' => 'sed', 'Sed0022810' => 'sed', 'SEGI_07099' => 'sgi', 'SEGI_11931' => 'sgi', 'SEGI_13187' => 'sgi', 'SEGI_29958' => 'sgi', 'SEGI_36351' => 'sgi', 'SGA_v2.0_scaffold126G33770' => 'sas', 'SGA_v2.0_scaffold153G37003' => 'sas', 'SGA_v2.0_scaffold2G01359' => 'sas', 'SGA_v2.0_scaffold5G03064' => 'sas', 'SGA_v2.0_scaffold95G28903' => 'sas', 'SHI12701' => 'shi', 'SHI26410' => 'shi', 'SHI38997' => 'shi', 'SHI53759' => 'shi', 'SHI53886' => 'shi', 'SHI54714' => 'shi', 'SMO011G0041' => 'smo', 'SMO146G0251' => 'smo', 'SMO160G0004' => 'smo', 'SMO174G0057' => 'smo', 'SMO244G0089' => 'smo', 'SMO296G0011' => 'smo', 'Solyc01g091280.3' => 'sly', 'Solyc05g047610.3' => 'sly', 'Solyc05g047640.3' => 'sly', 'Solyc05g055630.3' => 'sly', 'Solyc10g018160.2' => 'sly', 'Solyc10g084820.2' => 'sly', 'Solyc10g086565.2' => 'sly', 'Sopen01g037030' => 'spe', 'Sopen05g027920' => 'spe', 'Sopen05g034070' => 'spe', 'Sopen10g007260' => 'spe', 'Sopen10g034260' => 'spe', 'Sopen10g035950' => 'spe', 'Sp3g07710' => 'spa', 'Sp4g27420' => 'spa', 'Sp5g02450' => 'spa', 'Sp6g01280' => 'spa', 'Sp6g38480' => 'spa', 'Sp7g20780' => 'spa', 'TAR374G1413' => 'tar', 'TAR623G1777' => 'tar', 'TAR629G2370' => 'tar', 'TAR633G1759' => 'tar', 'TAR636G3387' => 'tar', 'THA.LOC104802447' => 'tha', 'THA.LOC104813916' => 'tha', 'THA.LOC104816423' => 'tha', 'THA.LOC104817246' => 'tha', 'THA.LOC104825895' => 'tha', 'Thecc.01G335200' => 'tca', 'Thecc.01G377400' => 'tca', 'Thecc.03G262200' => 'tca', 'Thecc.05G036800' => 'tca', 'Thecc.10G080500' => 'tca', 'Thecc.10G080800' => 'tca', 'Thhalv10001560m.g' => 'esa', 'Thhalv10006120m.g' => 'esa', 'Thhalv10014375m.g' => 'esa', 'Thhalv10021264m.g' => 'esa', 'Thhalv10028856m.g' => 'esa', 'TPR.G1914' => 'tpr', 'TPR.G4757' => 'tpr', 'TPR.G5595' => 'tpr', 'TWI14G0952' => 'twi', 'TWI14G1307' => 'twi', 'TWI38G2143' => 'twi', 'TWI59G0826' => 'twi', 'TWI77G0527' => 'twi', 'TWI81G0150' => 'twi', 'unitig_21.g21018' => 'ugi', 'unitig_26.g9725' => 'ugi', 'unitig_744.g24653' => 'ugi', 'unitig_749.g13778' => 'ugi', 'unitig_899.g15035' => 'ugi', 'vmacro04296' => 'vma', 'vmacro04852' => 'vma', 'vmacro13404' => 'vma', 'vmacro20169' => 'vma', 'vmacro21014' => 'vma', 'VMungo0331G0237' => 'vmu', 'VMungo0331G0706' => 'vmu', 'VMungo0331G1361' => 'vmu', 'VMungo0331G1489' => 'vmu', 'VMungo0540G1037' => 'vmu', 'VMungo0720G2487' => 'vmu', 'VMungo0720G2721' => 'vmu', 'Zm00001eb086860' => 'zma', 'Zm00001eb104760' => 'zma', 'Zm00001eb148220' => 'zma', 'Zm00001eb259030' => 'zma', 'Zm00001eb289590' => 'zma', 'Zm00001eb420150' => 'zma' ), 'gf_id' => 'HOM05D000968', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000968' ), 'data_identifier' => 'HOM05D000968', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000968', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p31690' => 'bna', 'A03p36040' => 'bna', 'A03p53730' => 'bna', 'A04p01410' => 'bna', 'A05p05420' => 'bna', 'A05p39630' => 'bna', 'A05p39640' => 'bna', 'A09p00970' => 'bna', 'A09p53060' => 'bna', 'A10p31890' => 'bna', 'Aa31LG10G15040' => 'aar', 'Aa31LG1G21090' => 'aar', 'Aa31LG1G26900' => 'aar', 'Aa31LG3G1820' => 'aar', 'Aa31LG5G1100' => 'aar', 'Aa31LG6G4740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2265' => 'aag', 'Actinidia07998' => 'ach', 'Actinidia11266' => 'ach', 'Actinidia12682' => 'ach', 'Actinidia26479' => 'ach', 'Actinidia31406' => 'ach', 'Actinidia32437' => 'ach', 'Actinidia38862' => 'ach', 'Ah.05g174230' => 'amhyb', 'Ah.05g179070' => 'amhyb', 'Ah.05g179090' => 'amhyb', 'Ah.12g059950' => 'amhyb', 'AL3G20480' => 'aly', 'AL4G44520' => 'aly', 'AL5G43110' => 'aly', 'AL6G13890' => 'aly', 'AL6G52620' => 'aly', 'AL7G30830' => 'aly', 'Aqoxy1G00899' => 'aox', 'Aqoxy5G04333' => 'aox', 'Aqoxy7G00641' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3IZ0NN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4EF6AW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W9P8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79GA3M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C43NQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFCU6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G95YVJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCHK29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LU1UG8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX91RN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGB4B1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8DA0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9H7JI' => 'arhy', 'AT3G09320' => 'ath', 'AT3G60800' => 'ath', 'AT4G00840' => 'ath', 'AT4G22750' => 'ath', 'AT5G04270' => 'ath', 'ATR0090G003' => 'atr', 'ATR0559G349' => 'atr', 'ATR0680G261' => 'atr', 'ATR0810G048' => 'atr', 'Atru.chr12.831' => 'acertr', 'Atru.chr5.303' => 'acertr', 'Atru.chr5.748' => 'acertr', 'Atru.chr8.1999' => 'acertr', 'Atru.chr9.1436' => 'acertr', 'AUR62004211' => 'cqu', 'AUR62004548' => 'cqu', 'AUR62013637' => 'cqu', 'AUR62022662' => 'cqu', 'AUR62025777' => 'cqu', 'AUR62042386' => 'cqu', 'BcaB01g02310' => 'bca', 'BcaB01g06062' => 'bca', 'BcaB02g08975' => 'bca', 'BcaB02g08980' => 'bca', 'BcaC01g04228' => 'bca', 'BcaC01g06830' => 'bca', 'BcaC02g10186' => 'bca', 'BcaC02g12214' => 'bca', 'BcaC04g24101' => 'bca', 'BcaC05g29520' => 'bca', 'BcaC05g29661' => 'bca', 'BcaC06g32130' => 'bca', 'BcaC06g32131' => 'bca', 'BcaC07g40601' => 'bca', 'BcaC07g42641' => 'bca', 'BcaNung01038' => 'bca', 'BcaNung01676' => 'bca', 'BcaNung02480' => 'bca', 'BcaNung07376' => 'bca', 'BolC3t16146H' => 'bol', 'BolC3t16637H' => 'bol', 'BolC4t22257H' => 'bol', 'BolC4t24728H' => 'bol', 'BolC5t34517H' => 'bol', 'BolC7t45703H' => 'bol', 'BolC8t51166H' => 'bol', 'BolC9t53038H' => 'bol', 'BolC9t60000H' => 'bol', 'BraA01t01345Z' => 'bra', 'BraA01t01346Z' => 'bra', 'BraA01t01348Z' => 'bra', 'BraA03t12347Z' => 'bra', 'BraA03t12775Z' => 'bra', 'BraA03t14439Z' => 'bra', 'BraA04t15860Z' => 'bra', 'BraA05t19511Z' => 'bra', 'BraA05t22746Z' => 'bra', 'BraA09t35767Z' => 'bra', 'BraA09t40732Z' => 'bra', 'BraA10t45233Z' => 'bra', 'C03p38720' => 'bna', 'C03p43680' => 'bna', 'C04p06350' => 'bna', 'C04p31800' => 'bna', 'C05p58680' => 'bna', 'C07p52110' => 'bna', 'C08p35760' => 'bna', 'C09p01050' => 'bna', 'C09p72600' => 'bna', 'CAN.G106.2' => 'can', 'CAN.G1482.1' => 'can', 'CAN.G324.12' => 'can', 'CAN.G388.20' => 'can', 'CAN.G412.7' => 'can', 'CAN.G694.32' => 'can', 'CAN.G92.12' => 'can', 'CANSAT11G2353' => 'cansat', 'CANSAT21G1398' => 'cansat', 'CANSAT56G2456' => 'cansat', 'CANSAT56G3031' => 'cansat', 'CANSAT56G4539' => 'cansat', 'CARHR083680' => 'chi', 'CARHR171190' => 'chi', 'CARHR209010' => 'chi', 'CARHR229680' => 'chi', 'CARHR249490' => 'chi', 'Carub.0003s0844' => 'cru', 'Carub.0005s2755' => 'cru', 'Carub.0006s0322' => 'cru', 'Carub.0006s3586' => 'cru', 'Carub.0007s1855' => 'cru', 'Ca_07808_v3' => 'car', 'Ca_09535_v3' => 'car', 'Ca_10548_v3' => 'car', 'Ca_19913_v3' => 'car', 'Ca_19916_v3' => 'car', 'Ca_19975_v3' => 'car', 'CBR_g22876' => 'cbr', 'CBR_g22879' => 'cbr', 'CBR_g38491' => 'cbr', 'CBR_g54185' => 'cbr', 'CBR_g54190' => 'cbr', 'Cc02_g11020' => 'ccan', 'Cc02_g23920' => 'ccan', 'Cc02_g39860' => 'ccan', 'Cc02_g39870' => 'ccan', 'Cc03_g06760' => 'ccan', 'Cc06_g02450' => 'ccan', 'Cc09_g09450' => 'ccan', 'CDE02G1959' => 'cde', 'CDE04G0600' => 'cde', 'CDE07G1996' => 'cde', 'CDE07G2078' => 'cde', 'CDE11G0611' => 'cde', 'Cfa001683' => 'cfa', 'Cfa001734' => 'cfa', 'Cfa001737' => 'cfa', 'Cfa003751' => 'cfa', 'Cfa012019' => 'cfa', 'Cfa017353' => 'cfa', 'Cfa017732' => 'cfa', 'Cfa022464' => 'cfa', 'Ciclev10012400m.g' => 'ccl', 'Ciclev10021242m.g' => 'ccl', 'Ciclev10021302m.g' => 'ccl', 'Ciclev10021463m.g' => 'ccl', 'Ciclev10032359m.g' => 'ccl', 'CiPaw.01G081000' => 'cil', 'CiPaw.01G262500' => 'cil', 'CiPaw.01G269800' => 'cil', 'CiPaw.02G168400' => 'cil', 'CiPaw.05G119500' => 'cil', 'CiPaw.11G147300' => 'cil', 'ClCG01G003630' => 'cla', 'ClCG05G000510' => 'cla', 'ClCG05G002300' => 'cla', 'ClCG08G007650' => 'cla', 'ClCG10G021250' => 'cla', 'COL.COLO4_06218' => 'col', 'COL.COLO4_12538' => 'col', 'COL.COLO4_14775' => 'col', 'COL.COLO4_23875' => 'col', 'Cpa.g.sc141.16' => 'cpa', 'Cpa.g.sc169.16' => 'cpa', 'Cpa.g.sc244.4' => 'cpa', 'Cpa.g.sc244.5' => 'cpa', 'Cpa.g.sc29.87' => 'cpa', 'Cpa.g.sc53.115' => 'cpa', 'Cre03.g207502' => 'cre', 'Cre06.g277000' => 'cre', 'Cre09.g394050' => 'cre', 'CsaV3_3G007680' => 'csa', 'CsaV3_3G009710' => 'csa', 'CsaV3_3G034790' => 'csa', 'CsaV3_5G003750' => 'csa', 'CsaV3_6G036620' => 'csa', 'CSS0002288' => 'camsi', 'CSS0011250' => 'camsi', 'CSS0021619' => 'camsi', 'CSS0046701' => 'camsi', 'DCAR_006420' => 'dca', 'DCAR_006865' => 'dca', 'DCAR_008558' => 'dca', 'DCAR_028754' => 'dca', 'DCAR_028755' => 'dca', 'Dinv31218' => 'din', 'Dinv32371' => 'din', 'Dinv34250' => 'din', 'Dinv37156' => 'din', 'Dinv43704' => 'din', 'Duzib093G1811' => 'dzi', 'Duzib106G1622' => 'dzi', 'Duzib114G0504' => 'dzi', 'Duzib128G0338' => 'dzi', 'Duzib128G1577' => 'dzi', 'Duzib133G0104' => 'dzi', 'Duzib133G1080' => 'dzi', 'Duzib138G0324' => 'dzi', 'Duzib138G0394' => 'dzi', 'Duzib205G0122' => 'dzi', 'Duzib268G1020' => 'dzi', 'Duzib268G1359' => 'dzi', 'ECA232G3929' => 'eca', 'ECA236G2210' => 'eca', 'ECA236G2287' => 'eca', 'ECA240G4568' => 'eca', 'ECA247G0894' => 'eca', 'EL10Ac1g00200' => 'bvu', 'EL10Ac1g00886' => 'bvu', 'EL10As1g23091' => 'bvu', 'EL10As1g23092' => 'bvu', 'Eucgr.A01284' => 'egr', 'Eucgr.A01285' => 'egr', 'Eucgr.D02456' => 'egr', 'Eucgr.E00018' => 'egr', 'Eucgr.E01439' => 'egr', 'Eucgr.G02859' => 'egr', 'FAN01G0168' => 'fan', 'FAN01G0453' => 'fan', 'FAN01G2761' => 'fan', 'FAN02G1239' => 'fan', 'FAN03G0645' => 'fan', 'FAN03G2707' => 'fan', 'FAN03G2978' => 'fan', 'FAN04G0227' => 'fan', 'FAN06G0091' => 'fan', 'FAN06G1418' => 'fan', 'FAN06G1512' => 'fan', 'FAN06G1986' => 'fan', 'FAN06G2905' => 'fan', 'FAN06G4325' => 'fan', 'FAN08G0033' => 'fan', 'FAN09G0642' => 'fan', 'FAN10G1763' => 'fan', 'FAN10G2026' => 'fan', 'FAN10G2513' => 'fan', 'FAN10G3402' => 'fan', 'FAN10G3564' => 'fan', 'FAN10G3987' => 'fan', 'FAN13G1490' => 'fan', 'FAN14G5857' => 'fan', 'FAN18G1188' => 'fan', 'FvH4_5g00750' => 'fve', 'FvH4_6g13410' => 'fve', 'FvH4_7g11740' => 'fve', 'FvH4_7g17410' => 'fve', 'FvH4_7g18860' => 'fve', 'Glyma.01G099100' => 'gma', 'Glyma.01G142300' => 'gma', 'Glyma.03G025500' => 'gma', 'Glyma.03G069700' => 'gma', 'Glyma.03G260000' => 'gma', 'Glyma.09G269800' => 'gma', 'Glyma.10G208700' => 'gma', 'Glyma.18G220400' => 'gma', 'Glyma.20G182000' => 'gma', 'Gohir.A01G221726' => 'ghi', 'Gohir.A07G134600' => 'ghi', 'Gohir.A07G146000' => 'ghi', 'Gohir.A08G173900' => 'ghi', 'Gohir.A09G194900' => 'ghi', 'Gohir.A10G204100' => 'ghi', 'Gohir.A11G080600' => 'ghi', 'Gohir.A11G327500' => 'ghi', 'Gohir.A12G101800' => 'ghi', 'Gohir.D01G211200' => 'ghi', 'Gohir.D07G139200' => 'ghi', 'Gohir.D07G152100' => 'ghi', 'Gohir.D08G192600' => 'ghi', 'Gohir.D09G189200' => 'ghi', 'Gohir.D10G212000' => 'ghi', 'Gohir.D11G085200' => 'ghi', 'Gohir.D11G346400' => 'ghi', 'Gohir.D12G104800' => 'ghi', 'Gorai.001G151300' => 'gra', 'Gorai.001G174100' => 'gra', 'Gorai.002G257000' => 'gra', 'Gorai.004G202600' => 'gra', 'Gorai.007G090900' => 'gra', 'Gorai.007G376700' => 'gra', 'Gorai.008G114100' => 'gra', 'Gorai.011G237900' => 'gra', 'GSVIVG01005450001' => 'vvi', 'GSVIVG01016232001' => 'vvi', 'GSVIVG01026157001' => 'vvi', 'GSVIVG01027419001' => 'vvi', 'GSVIVG01027631001' => 'vvi', 'GSVIVG01034143001' => 'vvi', 'HanXRQChr03g0093921' => 'han', 'HanXRQChr04g0120001' => 'han', 'HanXRQChr04g0122561' => 'han', 'HanXRQChr09g0246851' => 'han', 'HanXRQChr10g0293311' => 'han', 'HanXRQChr13g0425231' => 'han', 'HanXRQChr16g0532571' => 'han', 'Haze_09050' => 'cav', 'Haze_15715' => 'cav', 'Haze_15716' => 'cav', 'Haze_16803' => 'cav', 'Haze_16850' => 'cav', 'Hma1.2p1_0301F.1_g118655' => 'hma', 'Hma1.2p1_0309F.1_g120590' => 'hma', 'Hma1.2p1_0936F.1_g238900' => 'hma', 'Hma1.2p1_3552F.1_g336740' => 'hma', 'HPP92_003520' => 'vpl', 'HPP92_006628' => 'vpl', 'HPP92_006645' => 'vpl', 'HPP92_014669' => 'vpl', 'HPP92_015077' => 'vpl', 'Hund16742' => 'sun', 'Hund17022' => 'sun', 'Lalb_Chr02g0152131' => 'lal', 'Lalb_Chr05g0225371' => 'lal', 'Lalb_Chr07g0189841' => 'lal', 'Lalb_Chr07g0192961' => 'lal', 'Lalb_Chr12g0208221' => 'lal', 'Lalb_Chr13g0291211' => 'lal', 'Lalb_Chr13g0291781' => 'lal', 'Lalb_Chr18g0044651' => 'lal', 'Lalb_Chr21g0313731' => 'lal', 'Lj1g0022533' => 'lja', 'Lj2A18T50' => 'lonja', 'Lj2A92G93' => 'lonja', 'Lj3A965T73' => 'lonja', 'Lj3g0000673' => 'lja', 'Lj3g0002666' => 'lja', 'Lj4g0016985' => 'lja', 'Lj5g0003625' => 'lja', 'Lj7A529G36' => 'lonja', 'Lj9A569T49' => 'lonja', 'Lj9A604T63' => 'lonja', 'Lsat_1_v5_gn_3_132060' => 'lsa', 'Lsat_1_v5_gn_4_68941' => 'lsa', 'Lsat_1_v5_gn_5_95580' => 'lsa', 'Lsat_1_v5_gn_7_161' => 'lsa', 'Lsat_1_v5_gn_7_7041' => 'lsa', 'Lsat_1_v5_gn_9_33481' => 'lsa', 'Lsat_1_v5_gn_9_68260' => 'lsa', 'Manes.01G073100' => 'mes', 'Manes.01G266300' => 'mes', 'Manes.02G033300' => 'mes', 'Manes.05G017900' => 'mes', 'Manes.05G046100' => 'mes', 'Manes.08G080900' => 'mes', 'Manes.10G049400' => 'mes', 'Mapoly0009s0186' => 'mpo', 'Mapoly0036s0118' => 'mpo', 'Mapoly0101s0046' => 'mpo', 'MBI04_g30218_MAGBIO' => 'mbi', 'MBI04_g35564_MAGBIO' => 'mbi', 'MBI12_g34011_MAGBIO' => 'mbi', 'MBI14_g04655_MAGBIO' => 'mbi', 'MCO07G653' => 'mco', 'MCO10G173' => 'mco', 'MD01G1087100' => 'mdo', 'MD01G1104200' => 'mdo', 'MD02G1205100' => 'mdo', 'MD04G1079200' => 'mdo', 'MD04G1131400' => 'mdo', 'MD07G1121600' => 'mdo', 'MD07G1157300' => 'mdo', 'MD07G1171000' => 'mdo', 'MD12G1144500' => 'mdo', 'Medtr1g094610' => 'mtr', 'Medtr4g021795' => 'mtr', 'Medtr4g023760' => 'mtr', 'Medtr7g118050' => 'mtr', 'MELO3C005582.2' => 'cme', 'MELO3C005989.2' => 'cme', 'MELO3C006192.2' => 'cme', 'MELO3C009248.2' => 'cme', 'MELO3C019817.2' => 'cme', 'Migut.B01625' => 'egut', 'Migut.B01915' => 'egut', 'Migut.F01721' => 'egut', 'Migut.J00314' => 'egut', 'MSTRG.20742' => 'ama', 'MSTRG.8134' => 'ama', 'Nitab4.5_0000096g0010' => 'nta', 'Nitab4.5_0000202g0030' => 'nta', 'Nitab4.5_0000216g0370' => 'nta', 'Nitab4.5_0000457g0230' => 'nta', 'Nitab4.5_0001702g0170' => 'nta', 'Nitab4.5_0003607g0010' => 'nta', 'Nitab4.5_0004917g0020' => 'nta', 'Nitab4.5_0007059g0010' => 'nta', 'Nitab4.5_0007184g0010' => 'nta', 'Nitab4.5_0007346g0020' => 'nta', 'Nn1g00410' => 'nnu', 'Nn1g01252' => 'nnu', 'Nn2g11168' => 'nnu', 'Nn2g13403' => 'nnu', 'Nn2g13760' => 'nnu', 'Nn4g26380' => 'nnu', 'Oeu000806.2' => 'oeu', 'Oeu005788.1' => 'oeu', 'Oeu006900.3' => 'oeu', 'Oeu007797.1' => 'oeu', 'Oeu011932.1' => 'oeu', 'Oeu022739.1' => 'oeu', 'Oeu037918.1' => 'oeu', 'Oeu055490.2' => 'oeu', 'Os01g0844400' => 'osa', 'Os02g0819100' => 'osa', 'Os03g0804300' => 'osa', 'Os05g0458000' => 'osa', 'Os07g0467800' => 'osa', 'Os12g0602200' => 'osa', 'Peaxi162Scf00013g03444' => 'pax', 'Peaxi162Scf00094g01120' => 'pax', 'Peaxi162Scf00191g01211' => 'pax', 'Peaxi162Scf00238g01110' => 'pax', 'Peaxi162Scf00330g00719' => 'pax', 'Peaxi162Scf00627g00018' => 'pax', 'PGR031G2686' => 'pgr', 'PGR042G0809' => 'pgr', 'PGR142G0193' => 'pgr', 'PGSC0003DMG400011066' => 'stu', 'PGSC0003DMG400012041' => 'stu', 'PGSC0003DMG400013678' => 'stu', 'PGSC0003DMG400023477' => 'stu', 'PGSC0003DMG400025956' => 'stu', 'PGSC0003DMG401019151' => 'stu', 'Phvul.006G116400' => 'pvu', 'Phvul.007G097300' => 'pvu', 'Phvul.010G015000' => 'pvu', 'Phvul.010G083900' => 'pvu', 'Potri.001G117100' => 'ptr', 'Potri.002G147300' => 'ptr', 'Potri.003G115600' => 'ptr', 'Potri.006G087400' => 'ptr', 'Potri.010G226100' => 'ptr', 'Potri.014G069200' => 'ptr', 'Potri.014G104000' => 'ptr', 'Potri.016G100200' => 'ptr', 'Pp3c10_20450' => 'ppa', 'Pp3c1_42400' => 'ppa', 'Pp3c3_24390' => 'ppa', 'Pp3c3_2860' => 'ppa', 'PRCOL_00003193' => 'pco', 'Prupe.2G144500' => 'ppe', 'Prupe.2G195700' => 'ppe', 'Prupe.2G209800' => 'ppe', 'Prupe.5G080000' => 'ppe', 'Prupe.6G257900' => 'ppe', 'Psat3g001160' => 'psa', 'Psat6g181880' => 'psa', 'Psat7g233720' => 'psa', 'PSO063G7587' => 'pso', 'PSO339G2145' => 'pso', 'PSO339G3369' => 'pso', 'PSO478G2747' => 'pso', 'PSO513G0140' => 'pso', 'PSO782G1614' => 'pso', 'PSO782G4889' => 'pso', 'PSO782G5485' => 'pso', 'PSO801G0241' => 'pso', 'QL07p048854' => 'qlo', 'QL08p046745' => 'qlo', 'QL08p052606' => 'qlo', 'QL08p053414' => 'qlo', 'QL08p054868' => 'qlo', 'RcHm_v2.0_Chr1g0350251' => 'rch', 'RcHm_v2.0_Chr1g0360851' => 'rch', 'RcHm_v2.0_Chr1g0362791' => 'rch', 'RcHm_v2.0_Chr3g0466281' => 'rch', 'RcHm_v2.0_Chr7g0201481' => 'rch', 'Rhsim01G0148600' => 'rsi', 'Rhsim05G0194400' => 'rsi', 'Rhsim07G0000700' => 'rsi', 'Rhsim07G0000800' => 'rsi', 'Rhsim07G0027900' => 'rsi', 'Rhsim09G0149500' => 'rsi', 'RhsimUnG0186900' => 'rsi', 'Sabra01G0089900' => 'sbr', 'Sabra02G0114700' => 'sbr', 'Sabra02G0116300' => 'sbr', 'Sabra03G0080100' => 'sbr', 'Sabra08G0024300' => 'sbr', 'Sabra10G0174300' => 'sbr', 'Sabra14G0048900' => 'sbr', 'Sabra14G0076500' => 'sbr', 'SalBow5G2513' => 'sbo', 'Sc01g0002300' => 'sci', 'Sc01g0004450' => 'sci', 'Sc06g0001680' => 'sci', 'Sc23g0003580' => 'sci', 'Sed0000913' => 'sed', 'Sed0001655' => 'sed', 'Sed0007745' => 'sed', 'Sed0010951' => 'sed', 'Sed0017599' => 'sed', 'Sed0021405' => 'sed', 'Sed0022810' => 'sed', 'SEGI_07099' => 'sgi', 'SEGI_11931' => 'sgi', 'SEGI_13187' => 'sgi', 'SEGI_29958' => 'sgi', 'SEGI_36351' => 'sgi', 'SGA_v2.0_scaffold126G33770' => 'sas', 'SGA_v2.0_scaffold153G37003' => 'sas', 'SGA_v2.0_scaffold2G01359' => 'sas', 'SGA_v2.0_scaffold5G03064' => 'sas', 'SGA_v2.0_scaffold95G28903' => 'sas', 'SHI12701' => 'shi', 'SHI26410' => 'shi', 'SHI38997' => 'shi', 'SHI53759' => 'shi', 'SHI53886' => 'shi', 'SHI54714' => 'shi', 'SMO011G0041' => 'smo', 'SMO146G0251' => 'smo', 'SMO160G0004' => 'smo', 'SMO174G0057' => 'smo', 'SMO244G0089' => 'smo', 'SMO296G0011' => 'smo', 'Solyc01g091280.3' => 'sly', 'Solyc05g047610.3' => 'sly', 'Solyc05g047640.3' => 'sly', 'Solyc05g055630.3' => 'sly', 'Solyc10g018160.2' => 'sly', 'Solyc10g084820.2' => 'sly', 'Solyc10g086565.2' => 'sly', 'Sopen01g037030' => 'spe', 'Sopen05g027920' => 'spe', 'Sopen05g034070' => 'spe', 'Sopen10g007260' => 'spe', 'Sopen10g034260' => 'spe', 'Sopen10g035950' => 'spe', 'Sp3g07710' => 'spa', 'Sp4g27420' => 'spa', 'Sp5g02450' => 'spa', 'Sp6g01280' => 'spa', 'Sp6g38480' => 'spa', 'Sp7g20780' => 'spa', 'TAR374G1413' => 'tar', 'TAR623G1777' => 'tar', 'TAR629G2370' => 'tar', 'TAR633G1759' => 'tar', 'TAR636G3387' => 'tar', 'THA.LOC104802447' => 'tha', 'THA.LOC104813916' => 'tha', 'THA.LOC104816423' => 'tha', 'THA.LOC104817246' => 'tha', 'THA.LOC104825895' => 'tha', 'Thecc.01G335200' => 'tca', 'Thecc.01G377400' => 'tca', 'Thecc.03G262200' => 'tca', 'Thecc.05G036800' => 'tca', 'Thecc.10G080500' => 'tca', 'Thecc.10G080800' => 'tca', 'Thhalv10001560m.g' => 'esa', 'Thhalv10006120m.g' => 'esa', 'Thhalv10014375m.g' => 'esa', 'Thhalv10021264m.g' => 'esa', 'Thhalv10028856m.g' => 'esa', 'TPR.G1914' => 'tpr', 'TPR.G4757' => 'tpr', 'TPR.G5595' => 'tpr', 'TWI14G0952' => 'twi', 'TWI14G1307' => 'twi', 'TWI38G2143' => 'twi', 'TWI59G0826' => 'twi', 'TWI77G0527' => 'twi', 'TWI81G0150' => 'twi', 'unitig_21.g21018' => 'ugi', 'unitig_26.g9725' => 'ugi', 'unitig_744.g24653' => 'ugi', 'unitig_749.g13778' => 'ugi', 'unitig_899.g15035' => 'ugi', 'vmacro04296' => 'vma', 'vmacro04852' => 'vma', 'vmacro13404' => 'vma', 'vmacro20169' => 'vma', 'vmacro21014' => 'vma', 'VMungo0331G0237' => 'vmu', 'VMungo0331G0706' => 'vmu', 'VMungo0331G1361' => 'vmu', 'VMungo0331G1489' => 'vmu', 'VMungo0540G1037' => 'vmu', 'VMungo0720G2487' => 'vmu', 'VMungo0720G2721' => 'vmu', 'Zm00001eb086860' => 'zma', 'Zm00001eb104760' => 'zma', 'Zm00001eb148220' => 'zma', 'Zm00001eb259030' => 'zma', 'Zm00001eb289590' => 'zma', 'Zm00001eb420150' => 'zma' ) $gf_id = 'HOM05D000968' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000968' ) $data_identifier = 'HOM05D000968' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 19, 'bol' => (int) 9, 'bra' => (int) 12, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 5, 'ccan' => (int) 7, 'cde' => (int) 5, 'cfa' => (int) 8, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 4, 'dca' => (int) 5, 'din' => (int) 5, 'dzi' => (int) 12, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 25, 'fve' => (int) 5, 'gma' => (int) 9, 'ghi' => (int) 18, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 7, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 5, 'sun' => (int) 2, 'lal' => (int) 9, 'lja' => (int) 5, 'lonja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 9, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 2, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 3, 'stu' => (int) 6, 'pvu' => (int) 4, 'ptr' => (int) 8, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 3, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 1, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 5, 'sas' => (int) 5, 'shi' => (int) 6, 'smo' => (int) 6, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 3, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420150' $species_info = array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ) $local_species = 'ccan' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000968', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p31690' => 'bna', 'A03p36040' => 'bna', 'A03p53730' => 'bna', 'A04p01410' => 'bna', 'A05p05420' => 'bna', 'A05p39630' => 'bna', 'A05p39640' => 'bna', 'A09p00970' => 'bna', 'A09p53060' => 'bna', 'A10p31890' => 'bna', 'Aa31LG10G15040' => 'aar', 'Aa31LG1G21090' => 'aar', 'Aa31LG1G26900' => 'aar', 'Aa31LG3G1820' => 'aar', 'Aa31LG5G1100' => 'aar', 'Aa31LG6G4740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2265' => 'aag', 'Actinidia07998' => 'ach', 'Actinidia11266' => 'ach', 'Actinidia12682' => 'ach', 'Actinidia26479' => 'ach', 'Actinidia31406' => 'ach', 'Actinidia32437' => 'ach', 'Actinidia38862' => 'ach', 'Ah.05g174230' => 'amhyb', 'Ah.05g179070' => 'amhyb', 'Ah.05g179090' => 'amhyb', 'Ah.12g059950' => 'amhyb', 'AL3G20480' => 'aly', 'AL4G44520' => 'aly', 'AL5G43110' => 'aly', 'AL6G13890' => 'aly', 'AL6G52620' => 'aly', 'AL7G30830' => 'aly', 'Aqoxy1G00899' => 'aox', 'Aqoxy5G04333' => 'aox', 'Aqoxy7G00641' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3IZ0NN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4EF6AW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W9P8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79GA3M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C43NQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFCU6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G95YVJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCHK29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LU1UG8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX91RN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGB4B1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8DA0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9H7JI' => 'arhy', 'AT3G09320' => 'ath', 'AT3G60800' => 'ath', 'AT4G00840' => 'ath', 'AT4G22750' => 'ath', 'AT5G04270' => 'ath', 'ATR0090G003' => 'atr', 'ATR0559G349' => 'atr', 'ATR0680G261' => 'atr', 'ATR0810G048' => 'atr', 'Atru.chr12.831' => 'acertr', 'Atru.chr5.303' => 'acertr', 'Atru.chr5.748' => 'acertr', 'Atru.chr8.1999' => 'acertr', 'Atru.chr9.1436' => 'acertr', 'AUR62004211' => 'cqu', 'AUR62004548' => 'cqu', 'AUR62013637' => 'cqu', 'AUR62022662' => 'cqu', 'AUR62025777' => 'cqu', 'AUR62042386' => 'cqu', 'BcaB01g02310' => 'bca', 'BcaB01g06062' => 'bca', 'BcaB02g08975' => 'bca', 'BcaB02g08980' => 'bca', 'BcaC01g04228' => 'bca', 'BcaC01g06830' => 'bca', 'BcaC02g10186' => 'bca', 'BcaC02g12214' => 'bca', 'BcaC04g24101' => 'bca', 'BcaC05g29520' => 'bca', 'BcaC05g29661' => 'bca', 'BcaC06g32130' => 'bca', 'BcaC06g32131' => 'bca', 'BcaC07g40601' => 'bca', 'BcaC07g42641' => 'bca', 'BcaNung01038' => 'bca', 'BcaNung01676' => 'bca', 'BcaNung02480' => 'bca', 'BcaNung07376' => 'bca', 'BolC3t16146H' => 'bol', 'BolC3t16637H' => 'bol', 'BolC4t22257H' => 'bol', 'BolC4t24728H' => 'bol', 'BolC5t34517H' => 'bol', 'BolC7t45703H' => 'bol', 'BolC8t51166H' => 'bol', 'BolC9t53038H' => 'bol', 'BolC9t60000H' => 'bol', 'BraA01t01345Z' => 'bra', 'BraA01t01346Z' => 'bra', 'BraA01t01348Z' => 'bra', 'BraA03t12347Z' => 'bra', 'BraA03t12775Z' => 'bra', 'BraA03t14439Z' => 'bra', 'BraA04t15860Z' => 'bra', 'BraA05t19511Z' => 'bra', 'BraA05t22746Z' => 'bra', 'BraA09t35767Z' => 'bra', 'BraA09t40732Z' => 'bra', 'BraA10t45233Z' => 'bra', 'C03p38720' => 'bna', 'C03p43680' => 'bna', 'C04p06350' => 'bna', 'C04p31800' => 'bna', 'C05p58680' => 'bna', 'C07p52110' => 'bna', 'C08p35760' => 'bna', 'C09p01050' => 'bna', 'C09p72600' => 'bna', 'CAN.G106.2' => 'can', 'CAN.G1482.1' => 'can', 'CAN.G324.12' => 'can', 'CAN.G388.20' => 'can', 'CAN.G412.7' => 'can', 'CAN.G694.32' => 'can', 'CAN.G92.12' => 'can', 'CANSAT11G2353' => 'cansat', 'CANSAT21G1398' => 'cansat', 'CANSAT56G2456' => 'cansat', 'CANSAT56G3031' => 'cansat', 'CANSAT56G4539' => 'cansat', 'CARHR083680' => 'chi', 'CARHR171190' => 'chi', 'CARHR209010' => 'chi', 'CARHR229680' => 'chi', 'CARHR249490' => 'chi', 'Carub.0003s0844' => 'cru', 'Carub.0005s2755' => 'cru', 'Carub.0006s0322' => 'cru', 'Carub.0006s3586' => 'cru', 'Carub.0007s1855' => 'cru', 'Ca_07808_v3' => 'car', 'Ca_09535_v3' => 'car', 'Ca_10548_v3' => 'car', 'Ca_19913_v3' => 'car', 'Ca_19916_v3' => 'car', 'Ca_19975_v3' => 'car', 'CBR_g22876' => 'cbr', 'CBR_g22879' => 'cbr', 'CBR_g38491' => 'cbr', 'CBR_g54185' => 'cbr', 'CBR_g54190' => 'cbr', 'Cc02_g11020' => 'ccan', 'Cc02_g23920' => 'ccan', 'Cc02_g39860' => 'ccan', 'Cc02_g39870' => 'ccan', 'Cc03_g06760' => 'ccan', 'Cc06_g02450' => 'ccan', 'Cc09_g09450' => 'ccan', 'CDE02G1959' => 'cde', 'CDE04G0600' => 'cde', 'CDE07G1996' => 'cde', 'CDE07G2078' => 'cde', 'CDE11G0611' => 'cde', 'Cfa001683' => 'cfa', 'Cfa001734' => 'cfa', 'Cfa001737' => 'cfa', 'Cfa003751' => 'cfa', 'Cfa012019' => 'cfa', 'Cfa017353' => 'cfa', 'Cfa017732' => 'cfa', 'Cfa022464' => 'cfa', 'Ciclev10012400m.g' => 'ccl', 'Ciclev10021242m.g' => 'ccl', 'Ciclev10021302m.g' => 'ccl', 'Ciclev10021463m.g' => 'ccl', 'Ciclev10032359m.g' => 'ccl', 'CiPaw.01G081000' => 'cil', 'CiPaw.01G262500' => 'cil', 'CiPaw.01G269800' => 'cil', 'CiPaw.02G168400' => 'cil', 'CiPaw.05G119500' => 'cil', 'CiPaw.11G147300' => 'cil', 'ClCG01G003630' => 'cla', 'ClCG05G000510' => 'cla', 'ClCG05G002300' => 'cla', 'ClCG08G007650' => 'cla', 'ClCG10G021250' => 'cla', 'COL.COLO4_06218' => 'col', 'COL.COLO4_12538' => 'col', 'COL.COLO4_14775' => 'col', 'COL.COLO4_23875' => 'col', 'Cpa.g.sc141.16' => 'cpa', 'Cpa.g.sc169.16' => 'cpa', 'Cpa.g.sc244.4' => 'cpa', 'Cpa.g.sc244.5' => 'cpa', 'Cpa.g.sc29.87' => 'cpa', 'Cpa.g.sc53.115' => 'cpa', 'Cre03.g207502' => 'cre', 'Cre06.g277000' => 'cre', 'Cre09.g394050' => 'cre', 'CsaV3_3G007680' => 'csa', 'CsaV3_3G009710' => 'csa', 'CsaV3_3G034790' => 'csa', 'CsaV3_5G003750' => 'csa', 'CsaV3_6G036620' => 'csa', 'CSS0002288' => 'camsi', 'CSS0011250' => 'camsi', 'CSS0021619' => 'camsi', 'CSS0046701' => 'camsi', 'DCAR_006420' => 'dca', 'DCAR_006865' => 'dca', 'DCAR_008558' => 'dca', 'DCAR_028754' => 'dca', 'DCAR_028755' => 'dca', 'Dinv31218' => 'din', 'Dinv32371' => 'din', 'Dinv34250' => 'din', 'Dinv37156' => 'din', 'Dinv43704' => 'din', 'Duzib093G1811' => 'dzi', 'Duzib106G1622' => 'dzi', 'Duzib114G0504' => 'dzi', 'Duzib128G0338' => 'dzi', 'Duzib128G1577' => 'dzi', 'Duzib133G0104' => 'dzi', 'Duzib133G1080' => 'dzi', 'Duzib138G0324' => 'dzi', 'Duzib138G0394' => 'dzi', 'Duzib205G0122' => 'dzi', 'Duzib268G1020' => 'dzi', 'Duzib268G1359' => 'dzi', 'ECA232G3929' => 'eca', 'ECA236G2210' => 'eca', 'ECA236G2287' => 'eca', 'ECA240G4568' => 'eca', 'ECA247G0894' => 'eca', 'EL10Ac1g00200' => 'bvu', 'EL10Ac1g00886' => 'bvu', 'EL10As1g23091' => 'bvu', 'EL10As1g23092' => 'bvu', 'Eucgr.A01284' => 'egr', 'Eucgr.A01285' => 'egr', 'Eucgr.D02456' => 'egr', 'Eucgr.E00018' => 'egr', 'Eucgr.E01439' => 'egr', 'Eucgr.G02859' => 'egr', 'FAN01G0168' => 'fan', 'FAN01G0453' => 'fan', 'FAN01G2761' => 'fan', 'FAN02G1239' => 'fan', 'FAN03G0645' => 'fan', 'FAN03G2707' => 'fan', 'FAN03G2978' => 'fan', 'FAN04G0227' => 'fan', 'FAN06G0091' => 'fan', 'FAN06G1418' => 'fan', 'FAN06G1512' => 'fan', 'FAN06G1986' => 'fan', 'FAN06G2905' => 'fan', 'FAN06G4325' => 'fan', 'FAN08G0033' => 'fan', 'FAN09G0642' => 'fan', 'FAN10G1763' => 'fan', 'FAN10G2026' => 'fan', 'FAN10G2513' => 'fan', 'FAN10G3402' => 'fan', 'FAN10G3564' => 'fan', 'FAN10G3987' => 'fan', 'FAN13G1490' => 'fan', 'FAN14G5857' => 'fan', 'FAN18G1188' => 'fan', 'FvH4_5g00750' => 'fve', 'FvH4_6g13410' => 'fve', 'FvH4_7g11740' => 'fve', 'FvH4_7g17410' => 'fve', 'FvH4_7g18860' => 'fve', 'Glyma.01G099100' => 'gma', 'Glyma.01G142300' => 'gma', 'Glyma.03G025500' => 'gma', 'Glyma.03G069700' => 'gma', 'Glyma.03G260000' => 'gma', 'Glyma.09G269800' => 'gma', 'Glyma.10G208700' => 'gma', 'Glyma.18G220400' => 'gma', 'Glyma.20G182000' => 'gma', 'Gohir.A01G221726' => 'ghi', 'Gohir.A07G134600' => 'ghi', 'Gohir.A07G146000' => 'ghi', 'Gohir.A08G173900' => 'ghi', 'Gohir.A09G194900' => 'ghi', 'Gohir.A10G204100' => 'ghi', 'Gohir.A11G080600' => 'ghi', 'Gohir.A11G327500' => 'ghi', 'Gohir.A12G101800' => 'ghi', 'Gohir.D01G211200' => 'ghi', 'Gohir.D07G139200' => 'ghi', 'Gohir.D07G152100' => 'ghi', 'Gohir.D08G192600' => 'ghi', 'Gohir.D09G189200' => 'ghi', 'Gohir.D10G212000' => 'ghi', 'Gohir.D11G085200' => 'ghi', 'Gohir.D11G346400' => 'ghi', 'Gohir.D12G104800' => 'ghi', 'Gorai.001G151300' => 'gra', 'Gorai.001G174100' => 'gra', 'Gorai.002G257000' => 'gra', 'Gorai.004G202600' => 'gra', 'Gorai.007G090900' => 'gra', 'Gorai.007G376700' => 'gra', 'Gorai.008G114100' => 'gra', 'Gorai.011G237900' => 'gra', 'GSVIVG01005450001' => 'vvi', 'GSVIVG01016232001' => 'vvi', 'GSVIVG01026157001' => 'vvi', 'GSVIVG01027419001' => 'vvi', 'GSVIVG01027631001' => 'vvi', 'GSVIVG01034143001' => 'vvi', 'HanXRQChr03g0093921' => 'han', 'HanXRQChr04g0120001' => 'han', 'HanXRQChr04g0122561' => 'han', 'HanXRQChr09g0246851' => 'han', 'HanXRQChr10g0293311' => 'han', 'HanXRQChr13g0425231' => 'han', 'HanXRQChr16g0532571' => 'han', 'Haze_09050' => 'cav', 'Haze_15715' => 'cav', 'Haze_15716' => 'cav', 'Haze_16803' => 'cav', 'Haze_16850' => 'cav', 'Hma1.2p1_0301F.1_g118655' => 'hma', 'Hma1.2p1_0309F.1_g120590' => 'hma', 'Hma1.2p1_0936F.1_g238900' => 'hma', 'Hma1.2p1_3552F.1_g336740' => 'hma', 'HPP92_003520' => 'vpl', 'HPP92_006628' => 'vpl', 'HPP92_006645' => 'vpl', 'HPP92_014669' => 'vpl', 'HPP92_015077' => 'vpl', 'Hund16742' => 'sun', 'Hund17022' => 'sun', 'Lalb_Chr02g0152131' => 'lal', 'Lalb_Chr05g0225371' => 'lal', 'Lalb_Chr07g0189841' => 'lal', 'Lalb_Chr07g0192961' => 'lal', 'Lalb_Chr12g0208221' => 'lal', 'Lalb_Chr13g0291211' => 'lal', 'Lalb_Chr13g0291781' => 'lal', 'Lalb_Chr18g0044651' => 'lal', 'Lalb_Chr21g0313731' => 'lal', 'Lj1g0022533' => 'lja', 'Lj2A18T50' => 'lonja', 'Lj2A92G93' => 'lonja', 'Lj3A965T73' => 'lonja', 'Lj3g0000673' => 'lja', 'Lj3g0002666' => 'lja', 'Lj4g0016985' => 'lja', 'Lj5g0003625' => 'lja', 'Lj7A529G36' => 'lonja', 'Lj9A569T49' => 'lonja', 'Lj9A604T63' => 'lonja', 'Lsat_1_v5_gn_3_132060' => 'lsa', 'Lsat_1_v5_gn_4_68941' => 'lsa', 'Lsat_1_v5_gn_5_95580' => 'lsa', 'Lsat_1_v5_gn_7_161' => 'lsa', 'Lsat_1_v5_gn_7_7041' => 'lsa', 'Lsat_1_v5_gn_9_33481' => 'lsa', 'Lsat_1_v5_gn_9_68260' => 'lsa', 'Manes.01G073100' => 'mes', 'Manes.01G266300' => 'mes', 'Manes.02G033300' => 'mes', 'Manes.05G017900' => 'mes', 'Manes.05G046100' => 'mes', 'Manes.08G080900' => 'mes', 'Manes.10G049400' => 'mes', 'Mapoly0009s0186' => 'mpo', 'Mapoly0036s0118' => 'mpo', 'Mapoly0101s0046' => 'mpo', 'MBI04_g30218_MAGBIO' => 'mbi', 'MBI04_g35564_MAGBIO' => 'mbi', 'MBI12_g34011_MAGBIO' => 'mbi', 'MBI14_g04655_MAGBIO' => 'mbi', 'MCO07G653' => 'mco', 'MCO10G173' => 'mco', 'MD01G1087100' => 'mdo', 'MD01G1104200' => 'mdo', 'MD02G1205100' => 'mdo', 'MD04G1079200' => 'mdo', 'MD04G1131400' => 'mdo', 'MD07G1121600' => 'mdo', 'MD07G1157300' => 'mdo', 'MD07G1171000' => 'mdo', 'MD12G1144500' => 'mdo', 'Medtr1g094610' => 'mtr', 'Medtr4g021795' => 'mtr', 'Medtr4g023760' => 'mtr', 'Medtr7g118050' => 'mtr', 'MELO3C005582.2' => 'cme', 'MELO3C005989.2' => 'cme', 'MELO3C006192.2' => 'cme', 'MELO3C009248.2' => 'cme', 'MELO3C019817.2' => 'cme', 'Migut.B01625' => 'egut', 'Migut.B01915' => 'egut', 'Migut.F01721' => 'egut', 'Migut.J00314' => 'egut', 'MSTRG.20742' => 'ama', 'MSTRG.8134' => 'ama', 'Nitab4.5_0000096g0010' => 'nta', 'Nitab4.5_0000202g0030' => 'nta', 'Nitab4.5_0000216g0370' => 'nta', 'Nitab4.5_0000457g0230' => 'nta', 'Nitab4.5_0001702g0170' => 'nta', 'Nitab4.5_0003607g0010' => 'nta', 'Nitab4.5_0004917g0020' => 'nta', 'Nitab4.5_0007059g0010' => 'nta', 'Nitab4.5_0007184g0010' => 'nta', 'Nitab4.5_0007346g0020' => 'nta', 'Nn1g00410' => 'nnu', 'Nn1g01252' => 'nnu', 'Nn2g11168' => 'nnu', 'Nn2g13403' => 'nnu', 'Nn2g13760' => 'nnu', 'Nn4g26380' => 'nnu', 'Oeu000806.2' => 'oeu', 'Oeu005788.1' => 'oeu', 'Oeu006900.3' => 'oeu', 'Oeu007797.1' => 'oeu', 'Oeu011932.1' => 'oeu', 'Oeu022739.1' => 'oeu', 'Oeu037918.1' => 'oeu', 'Oeu055490.2' => 'oeu', 'Os01g0844400' => 'osa', 'Os02g0819100' => 'osa', 'Os03g0804300' => 'osa', 'Os05g0458000' => 'osa', 'Os07g0467800' => 'osa', 'Os12g0602200' => 'osa', 'Peaxi162Scf00013g03444' => 'pax', 'Peaxi162Scf00094g01120' => 'pax', 'Peaxi162Scf00191g01211' => 'pax', 'Peaxi162Scf00238g01110' => 'pax', 'Peaxi162Scf00330g00719' => 'pax', 'Peaxi162Scf00627g00018' => 'pax', 'PGR031G2686' => 'pgr', 'PGR042G0809' => 'pgr', 'PGR142G0193' => 'pgr', 'PGSC0003DMG400011066' => 'stu', 'PGSC0003DMG400012041' => 'stu', 'PGSC0003DMG400013678' => 'stu', 'PGSC0003DMG400023477' => 'stu', 'PGSC0003DMG400025956' => 'stu', 'PGSC0003DMG401019151' => 'stu', 'Phvul.006G116400' => 'pvu', 'Phvul.007G097300' => 'pvu', 'Phvul.010G015000' => 'pvu', 'Phvul.010G083900' => 'pvu', 'Potri.001G117100' => 'ptr', 'Potri.002G147300' => 'ptr', 'Potri.003G115600' => 'ptr', 'Potri.006G087400' => 'ptr', 'Potri.010G226100' => 'ptr', 'Potri.014G069200' => 'ptr', 'Potri.014G104000' => 'ptr', 'Potri.016G100200' => 'ptr', 'Pp3c10_20450' => 'ppa', 'Pp3c1_42400' => 'ppa', 'Pp3c3_24390' => 'ppa', 'Pp3c3_2860' => 'ppa', 'PRCOL_00003193' => 'pco', 'Prupe.2G144500' => 'ppe', 'Prupe.2G195700' => 'ppe', 'Prupe.2G209800' => 'ppe', 'Prupe.5G080000' => 'ppe', 'Prupe.6G257900' => 'ppe', 'Psat3g001160' => 'psa', 'Psat6g181880' => 'psa', 'Psat7g233720' => 'psa', 'PSO063G7587' => 'pso', 'PSO339G2145' => 'pso', 'PSO339G3369' => 'pso', 'PSO478G2747' => 'pso', 'PSO513G0140' => 'pso', 'PSO782G1614' => 'pso', 'PSO782G4889' => 'pso', 'PSO782G5485' => 'pso', 'PSO801G0241' => 'pso', 'QL07p048854' => 'qlo', 'QL08p046745' => 'qlo', 'QL08p052606' => 'qlo', 'QL08p053414' => 'qlo', 'QL08p054868' => 'qlo', 'RcHm_v2.0_Chr1g0350251' => 'rch', 'RcHm_v2.0_Chr1g0360851' => 'rch', 'RcHm_v2.0_Chr1g0362791' => 'rch', 'RcHm_v2.0_Chr3g0466281' => 'rch', 'RcHm_v2.0_Chr7g0201481' => 'rch', 'Rhsim01G0148600' => 'rsi', 'Rhsim05G0194400' => 'rsi', 'Rhsim07G0000700' => 'rsi', 'Rhsim07G0000800' => 'rsi', 'Rhsim07G0027900' => 'rsi', 'Rhsim09G0149500' => 'rsi', 'RhsimUnG0186900' => 'rsi', 'Sabra01G0089900' => 'sbr', 'Sabra02G0114700' => 'sbr', 'Sabra02G0116300' => 'sbr', 'Sabra03G0080100' => 'sbr', 'Sabra08G0024300' => 'sbr', 'Sabra10G0174300' => 'sbr', 'Sabra14G0048900' => 'sbr', 'Sabra14G0076500' => 'sbr', 'SalBow5G2513' => 'sbo', 'Sc01g0002300' => 'sci', 'Sc01g0004450' => 'sci', 'Sc06g0001680' => 'sci', 'Sc23g0003580' => 'sci', 'Sed0000913' => 'sed', 'Sed0001655' => 'sed', 'Sed0007745' => 'sed', 'Sed0010951' => 'sed', 'Sed0017599' => 'sed', 'Sed0021405' => 'sed', 'Sed0022810' => 'sed', 'SEGI_07099' => 'sgi', 'SEGI_11931' => 'sgi', 'SEGI_13187' => 'sgi', 'SEGI_29958' => 'sgi', 'SEGI_36351' => 'sgi', 'SGA_v2.0_scaffold126G33770' => 'sas', 'SGA_v2.0_scaffold153G37003' => 'sas', 'SGA_v2.0_scaffold2G01359' => 'sas', 'SGA_v2.0_scaffold5G03064' => 'sas', 'SGA_v2.0_scaffold95G28903' => 'sas', 'SHI12701' => 'shi', 'SHI26410' => 'shi', 'SHI38997' => 'shi', 'SHI53759' => 'shi', 'SHI53886' => 'shi', 'SHI54714' => 'shi', 'SMO011G0041' => 'smo', 'SMO146G0251' => 'smo', 'SMO160G0004' => 'smo', 'SMO174G0057' => 'smo', 'SMO244G0089' => 'smo', 'SMO296G0011' => 'smo', 'Solyc01g091280.3' => 'sly', 'Solyc05g047610.3' => 'sly', 'Solyc05g047640.3' => 'sly', 'Solyc05g055630.3' => 'sly', 'Solyc10g018160.2' => 'sly', 'Solyc10g084820.2' => 'sly', 'Solyc10g086565.2' => 'sly', 'Sopen01g037030' => 'spe', 'Sopen05g027920' => 'spe', 'Sopen05g034070' => 'spe', 'Sopen10g007260' => 'spe', 'Sopen10g034260' => 'spe', 'Sopen10g035950' => 'spe', 'Sp3g07710' => 'spa', 'Sp4g27420' => 'spa', 'Sp5g02450' => 'spa', 'Sp6g01280' => 'spa', 'Sp6g38480' => 'spa', 'Sp7g20780' => 'spa', 'TAR374G1413' => 'tar', 'TAR623G1777' => 'tar', 'TAR629G2370' => 'tar', 'TAR633G1759' => 'tar', 'TAR636G3387' => 'tar', 'THA.LOC104802447' => 'tha', 'THA.LOC104813916' => 'tha', 'THA.LOC104816423' => 'tha', 'THA.LOC104817246' => 'tha', 'THA.LOC104825895' => 'tha', 'Thecc.01G335200' => 'tca', 'Thecc.01G377400' => 'tca', 'Thecc.03G262200' => 'tca', 'Thecc.05G036800' => 'tca', 'Thecc.10G080500' => 'tca', 'Thecc.10G080800' => 'tca', 'Thhalv10001560m.g' => 'esa', 'Thhalv10006120m.g' => 'esa', 'Thhalv10014375m.g' => 'esa', 'Thhalv10021264m.g' => 'esa', 'Thhalv10028856m.g' => 'esa', 'TPR.G1914' => 'tpr', 'TPR.G4757' => 'tpr', 'TPR.G5595' => 'tpr', 'TWI14G0952' => 'twi', 'TWI14G1307' => 'twi', 'TWI38G2143' => 'twi', 'TWI59G0826' => 'twi', 'TWI77G0527' => 'twi', 'TWI81G0150' => 'twi', 'unitig_21.g21018' => 'ugi', 'unitig_26.g9725' => 'ugi', 'unitig_744.g24653' => 'ugi', 'unitig_749.g13778' => 'ugi', 'unitig_899.g15035' => 'ugi', 'vmacro04296' => 'vma', 'vmacro04852' => 'vma', 'vmacro13404' => 'vma', 'vmacro20169' => 'vma', 'vmacro21014' => 'vma', 'VMungo0331G0237' => 'vmu', 'VMungo0331G0706' => 'vmu', 'VMungo0331G1361' => 'vmu', 'VMungo0331G1489' => 'vmu', 'VMungo0540G1037' => 'vmu', 'VMungo0720G2487' => 'vmu', 'VMungo0720G2721' => 'vmu', 'Zm00001eb086860' => 'zma', 'Zm00001eb104760' => 'zma', 'Zm00001eb148220' => 'zma', 'Zm00001eb259030' => 'zma', 'Zm00001eb289590' => 'zma', 'Zm00001eb420150' => 'zma' ), 'gf_id' => 'HOM05D000968', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000968' ), 'data_identifier' => 'HOM05D000968', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000968', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p31690' => 'bna', 'A03p36040' => 'bna', 'A03p53730' => 'bna', 'A04p01410' => 'bna', 'A05p05420' => 'bna', 'A05p39630' => 'bna', 'A05p39640' => 'bna', 'A09p00970' => 'bna', 'A09p53060' => 'bna', 'A10p31890' => 'bna', 'Aa31LG10G15040' => 'aar', 'Aa31LG1G21090' => 'aar', 'Aa31LG1G26900' => 'aar', 'Aa31LG3G1820' => 'aar', 'Aa31LG5G1100' => 'aar', 'Aa31LG6G4740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2265' => 'aag', 'Actinidia07998' => 'ach', 'Actinidia11266' => 'ach', 'Actinidia12682' => 'ach', 'Actinidia26479' => 'ach', 'Actinidia31406' => 'ach', 'Actinidia32437' => 'ach', 'Actinidia38862' => 'ach', 'Ah.05g174230' => 'amhyb', 'Ah.05g179070' => 'amhyb', 'Ah.05g179090' => 'amhyb', 'Ah.12g059950' => 'amhyb', 'AL3G20480' => 'aly', 'AL4G44520' => 'aly', 'AL5G43110' => 'aly', 'AL6G13890' => 'aly', 'AL6G52620' => 'aly', 'AL7G30830' => 'aly', 'Aqoxy1G00899' => 'aox', 'Aqoxy5G04333' => 'aox', 'Aqoxy7G00641' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3IZ0NN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4EF6AW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W9P8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79GA3M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C43NQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFCU6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G95YVJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCHK29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LU1UG8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX91RN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGB4B1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8DA0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9H7JI' => 'arhy', 'AT3G09320' => 'ath', 'AT3G60800' => 'ath', 'AT4G00840' => 'ath', 'AT4G22750' => 'ath', 'AT5G04270' => 'ath', 'ATR0090G003' => 'atr', 'ATR0559G349' => 'atr', 'ATR0680G261' => 'atr', 'ATR0810G048' => 'atr', 'Atru.chr12.831' => 'acertr', 'Atru.chr5.303' => 'acertr', 'Atru.chr5.748' => 'acertr', 'Atru.chr8.1999' => 'acertr', 'Atru.chr9.1436' => 'acertr', 'AUR62004211' => 'cqu', 'AUR62004548' => 'cqu', 'AUR62013637' => 'cqu', 'AUR62022662' => 'cqu', 'AUR62025777' => 'cqu', 'AUR62042386' => 'cqu', 'BcaB01g02310' => 'bca', 'BcaB01g06062' => 'bca', 'BcaB02g08975' => 'bca', 'BcaB02g08980' => 'bca', 'BcaC01g04228' => 'bca', 'BcaC01g06830' => 'bca', 'BcaC02g10186' => 'bca', 'BcaC02g12214' => 'bca', 'BcaC04g24101' => 'bca', 'BcaC05g29520' => 'bca', 'BcaC05g29661' => 'bca', 'BcaC06g32130' => 'bca', 'BcaC06g32131' => 'bca', 'BcaC07g40601' => 'bca', 'BcaC07g42641' => 'bca', 'BcaNung01038' => 'bca', 'BcaNung01676' => 'bca', 'BcaNung02480' => 'bca', 'BcaNung07376' => 'bca', 'BolC3t16146H' => 'bol', 'BolC3t16637H' => 'bol', 'BolC4t22257H' => 'bol', 'BolC4t24728H' => 'bol', 'BolC5t34517H' => 'bol', 'BolC7t45703H' => 'bol', 'BolC8t51166H' => 'bol', 'BolC9t53038H' => 'bol', 'BolC9t60000H' => 'bol', 'BraA01t01345Z' => 'bra', 'BraA01t01346Z' => 'bra', 'BraA01t01348Z' => 'bra', 'BraA03t12347Z' => 'bra', 'BraA03t12775Z' => 'bra', 'BraA03t14439Z' => 'bra', 'BraA04t15860Z' => 'bra', 'BraA05t19511Z' => 'bra', 'BraA05t22746Z' => 'bra', 'BraA09t35767Z' => 'bra', 'BraA09t40732Z' => 'bra', 'BraA10t45233Z' => 'bra', 'C03p38720' => 'bna', 'C03p43680' => 'bna', 'C04p06350' => 'bna', 'C04p31800' => 'bna', 'C05p58680' => 'bna', 'C07p52110' => 'bna', 'C08p35760' => 'bna', 'C09p01050' => 'bna', 'C09p72600' => 'bna', 'CAN.G106.2' => 'can', 'CAN.G1482.1' => 'can', 'CAN.G324.12' => 'can', 'CAN.G388.20' => 'can', 'CAN.G412.7' => 'can', 'CAN.G694.32' => 'can', 'CAN.G92.12' => 'can', 'CANSAT11G2353' => 'cansat', 'CANSAT21G1398' => 'cansat', 'CANSAT56G2456' => 'cansat', 'CANSAT56G3031' => 'cansat', 'CANSAT56G4539' => 'cansat', 'CARHR083680' => 'chi', 'CARHR171190' => 'chi', 'CARHR209010' => 'chi', 'CARHR229680' => 'chi', 'CARHR249490' => 'chi', 'Carub.0003s0844' => 'cru', 'Carub.0005s2755' => 'cru', 'Carub.0006s0322' => 'cru', 'Carub.0006s3586' => 'cru', 'Carub.0007s1855' => 'cru', 'Ca_07808_v3' => 'car', 'Ca_09535_v3' => 'car', 'Ca_10548_v3' => 'car', 'Ca_19913_v3' => 'car', 'Ca_19916_v3' => 'car', 'Ca_19975_v3' => 'car', 'CBR_g22876' => 'cbr', 'CBR_g22879' => 'cbr', 'CBR_g38491' => 'cbr', 'CBR_g54185' => 'cbr', 'CBR_g54190' => 'cbr', 'Cc02_g11020' => 'ccan', 'Cc02_g23920' => 'ccan', 'Cc02_g39860' => 'ccan', 'Cc02_g39870' => 'ccan', 'Cc03_g06760' => 'ccan', 'Cc06_g02450' => 'ccan', 'Cc09_g09450' => 'ccan', 'CDE02G1959' => 'cde', 'CDE04G0600' => 'cde', 'CDE07G1996' => 'cde', 'CDE07G2078' => 'cde', 'CDE11G0611' => 'cde', 'Cfa001683' => 'cfa', 'Cfa001734' => 'cfa', 'Cfa001737' => 'cfa', 'Cfa003751' => 'cfa', 'Cfa012019' => 'cfa', 'Cfa017353' => 'cfa', 'Cfa017732' => 'cfa', 'Cfa022464' => 'cfa', 'Ciclev10012400m.g' => 'ccl', 'Ciclev10021242m.g' => 'ccl', 'Ciclev10021302m.g' => 'ccl', 'Ciclev10021463m.g' => 'ccl', 'Ciclev10032359m.g' => 'ccl', 'CiPaw.01G081000' => 'cil', 'CiPaw.01G262500' => 'cil', 'CiPaw.01G269800' => 'cil', 'CiPaw.02G168400' => 'cil', 'CiPaw.05G119500' => 'cil', 'CiPaw.11G147300' => 'cil', 'ClCG01G003630' => 'cla', 'ClCG05G000510' => 'cla', 'ClCG05G002300' => 'cla', 'ClCG08G007650' => 'cla', 'ClCG10G021250' => 'cla', 'COL.COLO4_06218' => 'col', 'COL.COLO4_12538' => 'col', 'COL.COLO4_14775' => 'col', 'COL.COLO4_23875' => 'col', 'Cpa.g.sc141.16' => 'cpa', 'Cpa.g.sc169.16' => 'cpa', 'Cpa.g.sc244.4' => 'cpa', 'Cpa.g.sc244.5' => 'cpa', 'Cpa.g.sc29.87' => 'cpa', 'Cpa.g.sc53.115' => 'cpa', 'Cre03.g207502' => 'cre', 'Cre06.g277000' => 'cre', 'Cre09.g394050' => 'cre', 'CsaV3_3G007680' => 'csa', 'CsaV3_3G009710' => 'csa', 'CsaV3_3G034790' => 'csa', 'CsaV3_5G003750' => 'csa', 'CsaV3_6G036620' => 'csa', 'CSS0002288' => 'camsi', 'CSS0011250' => 'camsi', 'CSS0021619' => 'camsi', 'CSS0046701' => 'camsi', 'DCAR_006420' => 'dca', 'DCAR_006865' => 'dca', 'DCAR_008558' => 'dca', 'DCAR_028754' => 'dca', 'DCAR_028755' => 'dca', 'Dinv31218' => 'din', 'Dinv32371' => 'din', 'Dinv34250' => 'din', 'Dinv37156' => 'din', 'Dinv43704' => 'din', 'Duzib093G1811' => 'dzi', 'Duzib106G1622' => 'dzi', 'Duzib114G0504' => 'dzi', 'Duzib128G0338' => 'dzi', 'Duzib128G1577' => 'dzi', 'Duzib133G0104' => 'dzi', 'Duzib133G1080' => 'dzi', 'Duzib138G0324' => 'dzi', 'Duzib138G0394' => 'dzi', 'Duzib205G0122' => 'dzi', 'Duzib268G1020' => 'dzi', 'Duzib268G1359' => 'dzi', 'ECA232G3929' => 'eca', 'ECA236G2210' => 'eca', 'ECA236G2287' => 'eca', 'ECA240G4568' => 'eca', 'ECA247G0894' => 'eca', 'EL10Ac1g00200' => 'bvu', 'EL10Ac1g00886' => 'bvu', 'EL10As1g23091' => 'bvu', 'EL10As1g23092' => 'bvu', 'Eucgr.A01284' => 'egr', 'Eucgr.A01285' => 'egr', 'Eucgr.D02456' => 'egr', 'Eucgr.E00018' => 'egr', 'Eucgr.E01439' => 'egr', 'Eucgr.G02859' => 'egr', 'FAN01G0168' => 'fan', 'FAN01G0453' => 'fan', 'FAN01G2761' => 'fan', 'FAN02G1239' => 'fan', 'FAN03G0645' => 'fan', 'FAN03G2707' => 'fan', 'FAN03G2978' => 'fan', 'FAN04G0227' => 'fan', 'FAN06G0091' => 'fan', 'FAN06G1418' => 'fan', 'FAN06G1512' => 'fan', 'FAN06G1986' => 'fan', 'FAN06G2905' => 'fan', 'FAN06G4325' => 'fan', 'FAN08G0033' => 'fan', 'FAN09G0642' => 'fan', 'FAN10G1763' => 'fan', 'FAN10G2026' => 'fan', 'FAN10G2513' => 'fan', 'FAN10G3402' => 'fan', 'FAN10G3564' => 'fan', 'FAN10G3987' => 'fan', 'FAN13G1490' => 'fan', 'FAN14G5857' => 'fan', 'FAN18G1188' => 'fan', 'FvH4_5g00750' => 'fve', 'FvH4_6g13410' => 'fve', 'FvH4_7g11740' => 'fve', 'FvH4_7g17410' => 'fve', 'FvH4_7g18860' => 'fve', 'Glyma.01G099100' => 'gma', 'Glyma.01G142300' => 'gma', 'Glyma.03G025500' => 'gma', 'Glyma.03G069700' => 'gma', 'Glyma.03G260000' => 'gma', 'Glyma.09G269800' => 'gma', 'Glyma.10G208700' => 'gma', 'Glyma.18G220400' => 'gma', 'Glyma.20G182000' => 'gma', 'Gohir.A01G221726' => 'ghi', 'Gohir.A07G134600' => 'ghi', 'Gohir.A07G146000' => 'ghi', 'Gohir.A08G173900' => 'ghi', 'Gohir.A09G194900' => 'ghi', 'Gohir.A10G204100' => 'ghi', 'Gohir.A11G080600' => 'ghi', 'Gohir.A11G327500' => 'ghi', 'Gohir.A12G101800' => 'ghi', 'Gohir.D01G211200' => 'ghi', 'Gohir.D07G139200' => 'ghi', 'Gohir.D07G152100' => 'ghi', 'Gohir.D08G192600' => 'ghi', 'Gohir.D09G189200' => 'ghi', 'Gohir.D10G212000' => 'ghi', 'Gohir.D11G085200' => 'ghi', 'Gohir.D11G346400' => 'ghi', 'Gohir.D12G104800' => 'ghi', 'Gorai.001G151300' => 'gra', 'Gorai.001G174100' => 'gra', 'Gorai.002G257000' => 'gra', 'Gorai.004G202600' => 'gra', 'Gorai.007G090900' => 'gra', 'Gorai.007G376700' => 'gra', 'Gorai.008G114100' => 'gra', 'Gorai.011G237900' => 'gra', 'GSVIVG01005450001' => 'vvi', 'GSVIVG01016232001' => 'vvi', 'GSVIVG01026157001' => 'vvi', 'GSVIVG01027419001' => 'vvi', 'GSVIVG01027631001' => 'vvi', 'GSVIVG01034143001' => 'vvi', 'HanXRQChr03g0093921' => 'han', 'HanXRQChr04g0120001' => 'han', 'HanXRQChr04g0122561' => 'han', 'HanXRQChr09g0246851' => 'han', 'HanXRQChr10g0293311' => 'han', 'HanXRQChr13g0425231' => 'han', 'HanXRQChr16g0532571' => 'han', 'Haze_09050' => 'cav', 'Haze_15715' => 'cav', 'Haze_15716' => 'cav', 'Haze_16803' => 'cav', 'Haze_16850' => 'cav', 'Hma1.2p1_0301F.1_g118655' => 'hma', 'Hma1.2p1_0309F.1_g120590' => 'hma', 'Hma1.2p1_0936F.1_g238900' => 'hma', 'Hma1.2p1_3552F.1_g336740' => 'hma', 'HPP92_003520' => 'vpl', 'HPP92_006628' => 'vpl', 'HPP92_006645' => 'vpl', 'HPP92_014669' => 'vpl', 'HPP92_015077' => 'vpl', 'Hund16742' => 'sun', 'Hund17022' => 'sun', 'Lalb_Chr02g0152131' => 'lal', 'Lalb_Chr05g0225371' => 'lal', 'Lalb_Chr07g0189841' => 'lal', 'Lalb_Chr07g0192961' => 'lal', 'Lalb_Chr12g0208221' => 'lal', 'Lalb_Chr13g0291211' => 'lal', 'Lalb_Chr13g0291781' => 'lal', 'Lalb_Chr18g0044651' => 'lal', 'Lalb_Chr21g0313731' => 'lal', 'Lj1g0022533' => 'lja', 'Lj2A18T50' => 'lonja', 'Lj2A92G93' => 'lonja', 'Lj3A965T73' => 'lonja', 'Lj3g0000673' => 'lja', 'Lj3g0002666' => 'lja', 'Lj4g0016985' => 'lja', 'Lj5g0003625' => 'lja', 'Lj7A529G36' => 'lonja', 'Lj9A569T49' => 'lonja', 'Lj9A604T63' => 'lonja', 'Lsat_1_v5_gn_3_132060' => 'lsa', 'Lsat_1_v5_gn_4_68941' => 'lsa', 'Lsat_1_v5_gn_5_95580' => 'lsa', 'Lsat_1_v5_gn_7_161' => 'lsa', 'Lsat_1_v5_gn_7_7041' => 'lsa', 'Lsat_1_v5_gn_9_33481' => 'lsa', 'Lsat_1_v5_gn_9_68260' => 'lsa', 'Manes.01G073100' => 'mes', 'Manes.01G266300' => 'mes', 'Manes.02G033300' => 'mes', 'Manes.05G017900' => 'mes', 'Manes.05G046100' => 'mes', 'Manes.08G080900' => 'mes', 'Manes.10G049400' => 'mes', 'Mapoly0009s0186' => 'mpo', 'Mapoly0036s0118' => 'mpo', 'Mapoly0101s0046' => 'mpo', 'MBI04_g30218_MAGBIO' => 'mbi', 'MBI04_g35564_MAGBIO' => 'mbi', 'MBI12_g34011_MAGBIO' => 'mbi', 'MBI14_g04655_MAGBIO' => 'mbi', 'MCO07G653' => 'mco', 'MCO10G173' => 'mco', 'MD01G1087100' => 'mdo', 'MD01G1104200' => 'mdo', 'MD02G1205100' => 'mdo', 'MD04G1079200' => 'mdo', 'MD04G1131400' => 'mdo', 'MD07G1121600' => 'mdo', 'MD07G1157300' => 'mdo', 'MD07G1171000' => 'mdo', 'MD12G1144500' => 'mdo', 'Medtr1g094610' => 'mtr', 'Medtr4g021795' => 'mtr', 'Medtr4g023760' => 'mtr', 'Medtr7g118050' => 'mtr', 'MELO3C005582.2' => 'cme', 'MELO3C005989.2' => 'cme', 'MELO3C006192.2' => 'cme', 'MELO3C009248.2' => 'cme', 'MELO3C019817.2' => 'cme', 'Migut.B01625' => 'egut', 'Migut.B01915' => 'egut', 'Migut.F01721' => 'egut', 'Migut.J00314' => 'egut', 'MSTRG.20742' => 'ama', 'MSTRG.8134' => 'ama', 'Nitab4.5_0000096g0010' => 'nta', 'Nitab4.5_0000202g0030' => 'nta', 'Nitab4.5_0000216g0370' => 'nta', 'Nitab4.5_0000457g0230' => 'nta', 'Nitab4.5_0001702g0170' => 'nta', 'Nitab4.5_0003607g0010' => 'nta', 'Nitab4.5_0004917g0020' => 'nta', 'Nitab4.5_0007059g0010' => 'nta', 'Nitab4.5_0007184g0010' => 'nta', 'Nitab4.5_0007346g0020' => 'nta', 'Nn1g00410' => 'nnu', 'Nn1g01252' => 'nnu', 'Nn2g11168' => 'nnu', 'Nn2g13403' => 'nnu', 'Nn2g13760' => 'nnu', 'Nn4g26380' => 'nnu', 'Oeu000806.2' => 'oeu', 'Oeu005788.1' => 'oeu', 'Oeu006900.3' => 'oeu', 'Oeu007797.1' => 'oeu', 'Oeu011932.1' => 'oeu', 'Oeu022739.1' => 'oeu', 'Oeu037918.1' => 'oeu', 'Oeu055490.2' => 'oeu', 'Os01g0844400' => 'osa', 'Os02g0819100' => 'osa', 'Os03g0804300' => 'osa', 'Os05g0458000' => 'osa', 'Os07g0467800' => 'osa', 'Os12g0602200' => 'osa', 'Peaxi162Scf00013g03444' => 'pax', 'Peaxi162Scf00094g01120' => 'pax', 'Peaxi162Scf00191g01211' => 'pax', 'Peaxi162Scf00238g01110' => 'pax', 'Peaxi162Scf00330g00719' => 'pax', 'Peaxi162Scf00627g00018' => 'pax', 'PGR031G2686' => 'pgr', 'PGR042G0809' => 'pgr', 'PGR142G0193' => 'pgr', 'PGSC0003DMG400011066' => 'stu', 'PGSC0003DMG400012041' => 'stu', 'PGSC0003DMG400013678' => 'stu', 'PGSC0003DMG400023477' => 'stu', 'PGSC0003DMG400025956' => 'stu', 'PGSC0003DMG401019151' => 'stu', 'Phvul.006G116400' => 'pvu', 'Phvul.007G097300' => 'pvu', 'Phvul.010G015000' => 'pvu', 'Phvul.010G083900' => 'pvu', 'Potri.001G117100' => 'ptr', 'Potri.002G147300' => 'ptr', 'Potri.003G115600' => 'ptr', 'Potri.006G087400' => 'ptr', 'Potri.010G226100' => 'ptr', 'Potri.014G069200' => 'ptr', 'Potri.014G104000' => 'ptr', 'Potri.016G100200' => 'ptr', 'Pp3c10_20450' => 'ppa', 'Pp3c1_42400' => 'ppa', 'Pp3c3_24390' => 'ppa', 'Pp3c3_2860' => 'ppa', 'PRCOL_00003193' => 'pco', 'Prupe.2G144500' => 'ppe', 'Prupe.2G195700' => 'ppe', 'Prupe.2G209800' => 'ppe', 'Prupe.5G080000' => 'ppe', 'Prupe.6G257900' => 'ppe', 'Psat3g001160' => 'psa', 'Psat6g181880' => 'psa', 'Psat7g233720' => 'psa', 'PSO063G7587' => 'pso', 'PSO339G2145' => 'pso', 'PSO339G3369' => 'pso', 'PSO478G2747' => 'pso', 'PSO513G0140' => 'pso', 'PSO782G1614' => 'pso', 'PSO782G4889' => 'pso', 'PSO782G5485' => 'pso', 'PSO801G0241' => 'pso', 'QL07p048854' => 'qlo', 'QL08p046745' => 'qlo', 'QL08p052606' => 'qlo', 'QL08p053414' => 'qlo', 'QL08p054868' => 'qlo', 'RcHm_v2.0_Chr1g0350251' => 'rch', 'RcHm_v2.0_Chr1g0360851' => 'rch', 'RcHm_v2.0_Chr1g0362791' => 'rch', 'RcHm_v2.0_Chr3g0466281' => 'rch', 'RcHm_v2.0_Chr7g0201481' => 'rch', 'Rhsim01G0148600' => 'rsi', 'Rhsim05G0194400' => 'rsi', 'Rhsim07G0000700' => 'rsi', 'Rhsim07G0000800' => 'rsi', 'Rhsim07G0027900' => 'rsi', 'Rhsim09G0149500' => 'rsi', 'RhsimUnG0186900' => 'rsi', 'Sabra01G0089900' => 'sbr', 'Sabra02G0114700' => 'sbr', 'Sabra02G0116300' => 'sbr', 'Sabra03G0080100' => 'sbr', 'Sabra08G0024300' => 'sbr', 'Sabra10G0174300' => 'sbr', 'Sabra14G0048900' => 'sbr', 'Sabra14G0076500' => 'sbr', 'SalBow5G2513' => 'sbo', 'Sc01g0002300' => 'sci', 'Sc01g0004450' => 'sci', 'Sc06g0001680' => 'sci', 'Sc23g0003580' => 'sci', 'Sed0000913' => 'sed', 'Sed0001655' => 'sed', 'Sed0007745' => 'sed', 'Sed0010951' => 'sed', 'Sed0017599' => 'sed', 'Sed0021405' => 'sed', 'Sed0022810' => 'sed', 'SEGI_07099' => 'sgi', 'SEGI_11931' => 'sgi', 'SEGI_13187' => 'sgi', 'SEGI_29958' => 'sgi', 'SEGI_36351' => 'sgi', 'SGA_v2.0_scaffold126G33770' => 'sas', 'SGA_v2.0_scaffold153G37003' => 'sas', 'SGA_v2.0_scaffold2G01359' => 'sas', 'SGA_v2.0_scaffold5G03064' => 'sas', 'SGA_v2.0_scaffold95G28903' => 'sas', 'SHI12701' => 'shi', 'SHI26410' => 'shi', 'SHI38997' => 'shi', 'SHI53759' => 'shi', 'SHI53886' => 'shi', 'SHI54714' => 'shi', 'SMO011G0041' => 'smo', 'SMO146G0251' => 'smo', 'SMO160G0004' => 'smo', 'SMO174G0057' => 'smo', 'SMO244G0089' => 'smo', 'SMO296G0011' => 'smo', 'Solyc01g091280.3' => 'sly', 'Solyc05g047610.3' => 'sly', 'Solyc05g047640.3' => 'sly', 'Solyc05g055630.3' => 'sly', 'Solyc10g018160.2' => 'sly', 'Solyc10g084820.2' => 'sly', 'Solyc10g086565.2' => 'sly', 'Sopen01g037030' => 'spe', 'Sopen05g027920' => 'spe', 'Sopen05g034070' => 'spe', 'Sopen10g007260' => 'spe', 'Sopen10g034260' => 'spe', 'Sopen10g035950' => 'spe', 'Sp3g07710' => 'spa', 'Sp4g27420' => 'spa', 'Sp5g02450' => 'spa', 'Sp6g01280' => 'spa', 'Sp6g38480' => 'spa', 'Sp7g20780' => 'spa', 'TAR374G1413' => 'tar', 'TAR623G1777' => 'tar', 'TAR629G2370' => 'tar', 'TAR633G1759' => 'tar', 'TAR636G3387' => 'tar', 'THA.LOC104802447' => 'tha', 'THA.LOC104813916' => 'tha', 'THA.LOC104816423' => 'tha', 'THA.LOC104817246' => 'tha', 'THA.LOC104825895' => 'tha', 'Thecc.01G335200' => 'tca', 'Thecc.01G377400' => 'tca', 'Thecc.03G262200' => 'tca', 'Thecc.05G036800' => 'tca', 'Thecc.10G080500' => 'tca', 'Thecc.10G080800' => 'tca', 'Thhalv10001560m.g' => 'esa', 'Thhalv10006120m.g' => 'esa', 'Thhalv10014375m.g' => 'esa', 'Thhalv10021264m.g' => 'esa', 'Thhalv10028856m.g' => 'esa', 'TPR.G1914' => 'tpr', 'TPR.G4757' => 'tpr', 'TPR.G5595' => 'tpr', 'TWI14G0952' => 'twi', 'TWI14G1307' => 'twi', 'TWI38G2143' => 'twi', 'TWI59G0826' => 'twi', 'TWI77G0527' => 'twi', 'TWI81G0150' => 'twi', 'unitig_21.g21018' => 'ugi', 'unitig_26.g9725' => 'ugi', 'unitig_744.g24653' => 'ugi', 'unitig_749.g13778' => 'ugi', 'unitig_899.g15035' => 'ugi', 'vmacro04296' => 'vma', 'vmacro04852' => 'vma', 'vmacro13404' => 'vma', 'vmacro20169' => 'vma', 'vmacro21014' => 'vma', 'VMungo0331G0237' => 'vmu', 'VMungo0331G0706' => 'vmu', 'VMungo0331G1361' => 'vmu', 'VMungo0331G1489' => 'vmu', 'VMungo0540G1037' => 'vmu', 'VMungo0720G2487' => 'vmu', 'VMungo0720G2721' => 'vmu', 'Zm00001eb086860' => 'zma', 'Zm00001eb104760' => 'zma', 'Zm00001eb148220' => 'zma', 'Zm00001eb259030' => 'zma', 'Zm00001eb289590' => 'zma', 'Zm00001eb420150' => 'zma' ) $gf_id = 'HOM05D000968' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000968' ) $data_identifier = 'HOM05D000968' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 19, 'bol' => (int) 9, 'bra' => (int) 12, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 5, 'ccan' => (int) 7, 'cde' => (int) 5, 'cfa' => (int) 8, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 4, 'dca' => (int) 5, 'din' => (int) 5, 'dzi' => (int) 12, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 25, 'fve' => (int) 5, 'gma' => (int) 9, 'ghi' => (int) 18, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 7, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 5, 'sun' => (int) 2, 'lal' => (int) 9, 'lja' => (int) 5, 'lonja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 9, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 2, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 3, 'stu' => (int) 6, 'pvu' => (int) 4, 'ptr' => (int) 8, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 3, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 1, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 5, 'sas' => (int) 5, 'shi' => (int) 6, 'smo' => (int) 6, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 3, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420150' $species_info = array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ) $local_species = 'ccan' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000968', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p31690' => 'bna', 'A03p36040' => 'bna', 'A03p53730' => 'bna', 'A04p01410' => 'bna', 'A05p05420' => 'bna', 'A05p39630' => 'bna', 'A05p39640' => 'bna', 'A09p00970' => 'bna', 'A09p53060' => 'bna', 'A10p31890' => 'bna', 'Aa31LG10G15040' => 'aar', 'Aa31LG1G21090' => 'aar', 'Aa31LG1G26900' => 'aar', 'Aa31LG3G1820' => 'aar', 'Aa31LG5G1100' => 'aar', 'Aa31LG6G4740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2265' => 'aag', 'Actinidia07998' => 'ach', 'Actinidia11266' => 'ach', 'Actinidia12682' => 'ach', 'Actinidia26479' => 'ach', 'Actinidia31406' => 'ach', 'Actinidia32437' => 'ach', 'Actinidia38862' => 'ach', 'Ah.05g174230' => 'amhyb', 'Ah.05g179070' => 'amhyb', 'Ah.05g179090' => 'amhyb', 'Ah.12g059950' => 'amhyb', 'AL3G20480' => 'aly', 'AL4G44520' => 'aly', 'AL5G43110' => 'aly', 'AL6G13890' => 'aly', 'AL6G52620' => 'aly', 'AL7G30830' => 'aly', 'Aqoxy1G00899' => 'aox', 'Aqoxy5G04333' => 'aox', 'Aqoxy7G00641' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3IZ0NN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4EF6AW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W9P8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79GA3M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C43NQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFCU6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G95YVJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCHK29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LU1UG8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX91RN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGB4B1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8DA0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9H7JI' => 'arhy', 'AT3G09320' => 'ath', 'AT3G60800' => 'ath', 'AT4G00840' => 'ath', 'AT4G22750' => 'ath', 'AT5G04270' => 'ath', 'ATR0090G003' => 'atr', 'ATR0559G349' => 'atr', 'ATR0680G261' => 'atr', 'ATR0810G048' => 'atr', 'Atru.chr12.831' => 'acertr', 'Atru.chr5.303' => 'acertr', 'Atru.chr5.748' => 'acertr', 'Atru.chr8.1999' => 'acertr', 'Atru.chr9.1436' => 'acertr', 'AUR62004211' => 'cqu', 'AUR62004548' => 'cqu', 'AUR62013637' => 'cqu', 'AUR62022662' => 'cqu', 'AUR62025777' => 'cqu', 'AUR62042386' => 'cqu', 'BcaB01g02310' => 'bca', 'BcaB01g06062' => 'bca', 'BcaB02g08975' => 'bca', 'BcaB02g08980' => 'bca', 'BcaC01g04228' => 'bca', 'BcaC01g06830' => 'bca', 'BcaC02g10186' => 'bca', 'BcaC02g12214' => 'bca', 'BcaC04g24101' => 'bca', 'BcaC05g29520' => 'bca', 'BcaC05g29661' => 'bca', 'BcaC06g32130' => 'bca', 'BcaC06g32131' => 'bca', 'BcaC07g40601' => 'bca', 'BcaC07g42641' => 'bca', 'BcaNung01038' => 'bca', 'BcaNung01676' => 'bca', 'BcaNung02480' => 'bca', 'BcaNung07376' => 'bca', 'BolC3t16146H' => 'bol', 'BolC3t16637H' => 'bol', 'BolC4t22257H' => 'bol', 'BolC4t24728H' => 'bol', 'BolC5t34517H' => 'bol', 'BolC7t45703H' => 'bol', 'BolC8t51166H' => 'bol', 'BolC9t53038H' => 'bol', 'BolC9t60000H' => 'bol', 'BraA01t01345Z' => 'bra', 'BraA01t01346Z' => 'bra', 'BraA01t01348Z' => 'bra', 'BraA03t12347Z' => 'bra', 'BraA03t12775Z' => 'bra', 'BraA03t14439Z' => 'bra', 'BraA04t15860Z' => 'bra', 'BraA05t19511Z' => 'bra', 'BraA05t22746Z' => 'bra', 'BraA09t35767Z' => 'bra', 'BraA09t40732Z' => 'bra', 'BraA10t45233Z' => 'bra', 'C03p38720' => 'bna', 'C03p43680' => 'bna', 'C04p06350' => 'bna', 'C04p31800' => 'bna', 'C05p58680' => 'bna', 'C07p52110' => 'bna', 'C08p35760' => 'bna', 'C09p01050' => 'bna', 'C09p72600' => 'bna', 'CAN.G106.2' => 'can', 'CAN.G1482.1' => 'can', 'CAN.G324.12' => 'can', 'CAN.G388.20' => 'can', 'CAN.G412.7' => 'can', 'CAN.G694.32' => 'can', 'CAN.G92.12' => 'can', 'CANSAT11G2353' => 'cansat', 'CANSAT21G1398' => 'cansat', 'CANSAT56G2456' => 'cansat', 'CANSAT56G3031' => 'cansat', 'CANSAT56G4539' => 'cansat', 'CARHR083680' => 'chi', 'CARHR171190' => 'chi', 'CARHR209010' => 'chi', 'CARHR229680' => 'chi', 'CARHR249490' => 'chi', 'Carub.0003s0844' => 'cru', 'Carub.0005s2755' => 'cru', 'Carub.0006s0322' => 'cru', 'Carub.0006s3586' => 'cru', 'Carub.0007s1855' => 'cru', 'Ca_07808_v3' => 'car', 'Ca_09535_v3' => 'car', 'Ca_10548_v3' => 'car', 'Ca_19913_v3' => 'car', 'Ca_19916_v3' => 'car', 'Ca_19975_v3' => 'car', 'CBR_g22876' => 'cbr', 'CBR_g22879' => 'cbr', 'CBR_g38491' => 'cbr', 'CBR_g54185' => 'cbr', 'CBR_g54190' => 'cbr', 'Cc02_g11020' => 'ccan', 'Cc02_g23920' => 'ccan', 'Cc02_g39860' => 'ccan', 'Cc02_g39870' => 'ccan', 'Cc03_g06760' => 'ccan', 'Cc06_g02450' => 'ccan', 'Cc09_g09450' => 'ccan', 'CDE02G1959' => 'cde', 'CDE04G0600' => 'cde', 'CDE07G1996' => 'cde', 'CDE07G2078' => 'cde', 'CDE11G0611' => 'cde', 'Cfa001683' => 'cfa', 'Cfa001734' => 'cfa', 'Cfa001737' => 'cfa', 'Cfa003751' => 'cfa', 'Cfa012019' => 'cfa', 'Cfa017353' => 'cfa', 'Cfa017732' => 'cfa', 'Cfa022464' => 'cfa', 'Ciclev10012400m.g' => 'ccl', 'Ciclev10021242m.g' => 'ccl', 'Ciclev10021302m.g' => 'ccl', 'Ciclev10021463m.g' => 'ccl', 'Ciclev10032359m.g' => 'ccl', 'CiPaw.01G081000' => 'cil', 'CiPaw.01G262500' => 'cil', 'CiPaw.01G269800' => 'cil', 'CiPaw.02G168400' => 'cil', 'CiPaw.05G119500' => 'cil', 'CiPaw.11G147300' => 'cil', 'ClCG01G003630' => 'cla', 'ClCG05G000510' => 'cla', 'ClCG05G002300' => 'cla', 'ClCG08G007650' => 'cla', 'ClCG10G021250' => 'cla', 'COL.COLO4_06218' => 'col', 'COL.COLO4_12538' => 'col', 'COL.COLO4_14775' => 'col', 'COL.COLO4_23875' => 'col', 'Cpa.g.sc141.16' => 'cpa', 'Cpa.g.sc169.16' => 'cpa', 'Cpa.g.sc244.4' => 'cpa', 'Cpa.g.sc244.5' => 'cpa', 'Cpa.g.sc29.87' => 'cpa', 'Cpa.g.sc53.115' => 'cpa', 'Cre03.g207502' => 'cre', 'Cre06.g277000' => 'cre', 'Cre09.g394050' => 'cre', 'CsaV3_3G007680' => 'csa', 'CsaV3_3G009710' => 'csa', 'CsaV3_3G034790' => 'csa', 'CsaV3_5G003750' => 'csa', 'CsaV3_6G036620' => 'csa', 'CSS0002288' => 'camsi', 'CSS0011250' => 'camsi', 'CSS0021619' => 'camsi', 'CSS0046701' => 'camsi', 'DCAR_006420' => 'dca', 'DCAR_006865' => 'dca', 'DCAR_008558' => 'dca', 'DCAR_028754' => 'dca', 'DCAR_028755' => 'dca', 'Dinv31218' => 'din', 'Dinv32371' => 'din', 'Dinv34250' => 'din', 'Dinv37156' => 'din', 'Dinv43704' => 'din', 'Duzib093G1811' => 'dzi', 'Duzib106G1622' => 'dzi', 'Duzib114G0504' => 'dzi', 'Duzib128G0338' => 'dzi', 'Duzib128G1577' => 'dzi', 'Duzib133G0104' => 'dzi', 'Duzib133G1080' => 'dzi', 'Duzib138G0324' => 'dzi', 'Duzib138G0394' => 'dzi', 'Duzib205G0122' => 'dzi', 'Duzib268G1020' => 'dzi', 'Duzib268G1359' => 'dzi', 'ECA232G3929' => 'eca', 'ECA236G2210' => 'eca', 'ECA236G2287' => 'eca', 'ECA240G4568' => 'eca', 'ECA247G0894' => 'eca', 'EL10Ac1g00200' => 'bvu', 'EL10Ac1g00886' => 'bvu', 'EL10As1g23091' => 'bvu', 'EL10As1g23092' => 'bvu', 'Eucgr.A01284' => 'egr', 'Eucgr.A01285' => 'egr', 'Eucgr.D02456' => 'egr', 'Eucgr.E00018' => 'egr', 'Eucgr.E01439' => 'egr', 'Eucgr.G02859' => 'egr', 'FAN01G0168' => 'fan', 'FAN01G0453' => 'fan', 'FAN01G2761' => 'fan', 'FAN02G1239' => 'fan', 'FAN03G0645' => 'fan', 'FAN03G2707' => 'fan', 'FAN03G2978' => 'fan', 'FAN04G0227' => 'fan', 'FAN06G0091' => 'fan', 'FAN06G1418' => 'fan', 'FAN06G1512' => 'fan', 'FAN06G1986' => 'fan', 'FAN06G2905' => 'fan', 'FAN06G4325' => 'fan', 'FAN08G0033' => 'fan', 'FAN09G0642' => 'fan', 'FAN10G1763' => 'fan', 'FAN10G2026' => 'fan', 'FAN10G2513' => 'fan', 'FAN10G3402' => 'fan', 'FAN10G3564' => 'fan', 'FAN10G3987' => 'fan', 'FAN13G1490' => 'fan', 'FAN14G5857' => 'fan', 'FAN18G1188' => 'fan', 'FvH4_5g00750' => 'fve', 'FvH4_6g13410' => 'fve', 'FvH4_7g11740' => 'fve', 'FvH4_7g17410' => 'fve', 'FvH4_7g18860' => 'fve', 'Glyma.01G099100' => 'gma', 'Glyma.01G142300' => 'gma', 'Glyma.03G025500' => 'gma', 'Glyma.03G069700' => 'gma', 'Glyma.03G260000' => 'gma', 'Glyma.09G269800' => 'gma', 'Glyma.10G208700' => 'gma', 'Glyma.18G220400' => 'gma', 'Glyma.20G182000' => 'gma', 'Gohir.A01G221726' => 'ghi', 'Gohir.A07G134600' => 'ghi', 'Gohir.A07G146000' => 'ghi', 'Gohir.A08G173900' => 'ghi', 'Gohir.A09G194900' => 'ghi', 'Gohir.A10G204100' => 'ghi', 'Gohir.A11G080600' => 'ghi', 'Gohir.A11G327500' => 'ghi', 'Gohir.A12G101800' => 'ghi', 'Gohir.D01G211200' => 'ghi', 'Gohir.D07G139200' => 'ghi', 'Gohir.D07G152100' => 'ghi', 'Gohir.D08G192600' => 'ghi', 'Gohir.D09G189200' => 'ghi', 'Gohir.D10G212000' => 'ghi', 'Gohir.D11G085200' => 'ghi', 'Gohir.D11G346400' => 'ghi', 'Gohir.D12G104800' => 'ghi', 'Gorai.001G151300' => 'gra', 'Gorai.001G174100' => 'gra', 'Gorai.002G257000' => 'gra', 'Gorai.004G202600' => 'gra', 'Gorai.007G090900' => 'gra', 'Gorai.007G376700' => 'gra', 'Gorai.008G114100' => 'gra', 'Gorai.011G237900' => 'gra', 'GSVIVG01005450001' => 'vvi', 'GSVIVG01016232001' => 'vvi', 'GSVIVG01026157001' => 'vvi', 'GSVIVG01027419001' => 'vvi', 'GSVIVG01027631001' => 'vvi', 'GSVIVG01034143001' => 'vvi', 'HanXRQChr03g0093921' => 'han', 'HanXRQChr04g0120001' => 'han', 'HanXRQChr04g0122561' => 'han', 'HanXRQChr09g0246851' => 'han', 'HanXRQChr10g0293311' => 'han', 'HanXRQChr13g0425231' => 'han', 'HanXRQChr16g0532571' => 'han', 'Haze_09050' => 'cav', 'Haze_15715' => 'cav', 'Haze_15716' => 'cav', 'Haze_16803' => 'cav', 'Haze_16850' => 'cav', 'Hma1.2p1_0301F.1_g118655' => 'hma', 'Hma1.2p1_0309F.1_g120590' => 'hma', 'Hma1.2p1_0936F.1_g238900' => 'hma', 'Hma1.2p1_3552F.1_g336740' => 'hma', 'HPP92_003520' => 'vpl', 'HPP92_006628' => 'vpl', 'HPP92_006645' => 'vpl', 'HPP92_014669' => 'vpl', 'HPP92_015077' => 'vpl', 'Hund16742' => 'sun', 'Hund17022' => 'sun', 'Lalb_Chr02g0152131' => 'lal', 'Lalb_Chr05g0225371' => 'lal', 'Lalb_Chr07g0189841' => 'lal', 'Lalb_Chr07g0192961' => 'lal', 'Lalb_Chr12g0208221' => 'lal', 'Lalb_Chr13g0291211' => 'lal', 'Lalb_Chr13g0291781' => 'lal', 'Lalb_Chr18g0044651' => 'lal', 'Lalb_Chr21g0313731' => 'lal', 'Lj1g0022533' => 'lja', 'Lj2A18T50' => 'lonja', 'Lj2A92G93' => 'lonja', 'Lj3A965T73' => 'lonja', 'Lj3g0000673' => 'lja', 'Lj3g0002666' => 'lja', 'Lj4g0016985' => 'lja', 'Lj5g0003625' => 'lja', 'Lj7A529G36' => 'lonja', 'Lj9A569T49' => 'lonja', 'Lj9A604T63' => 'lonja', 'Lsat_1_v5_gn_3_132060' => 'lsa', 'Lsat_1_v5_gn_4_68941' => 'lsa', 'Lsat_1_v5_gn_5_95580' => 'lsa', 'Lsat_1_v5_gn_7_161' => 'lsa', 'Lsat_1_v5_gn_7_7041' => 'lsa', 'Lsat_1_v5_gn_9_33481' => 'lsa', 'Lsat_1_v5_gn_9_68260' => 'lsa', 'Manes.01G073100' => 'mes', 'Manes.01G266300' => 'mes', 'Manes.02G033300' => 'mes', 'Manes.05G017900' => 'mes', 'Manes.05G046100' => 'mes', 'Manes.08G080900' => 'mes', 'Manes.10G049400' => 'mes', 'Mapoly0009s0186' => 'mpo', 'Mapoly0036s0118' => 'mpo', 'Mapoly0101s0046' => 'mpo', 'MBI04_g30218_MAGBIO' => 'mbi', 'MBI04_g35564_MAGBIO' => 'mbi', 'MBI12_g34011_MAGBIO' => 'mbi', 'MBI14_g04655_MAGBIO' => 'mbi', 'MCO07G653' => 'mco', 'MCO10G173' => 'mco', 'MD01G1087100' => 'mdo', 'MD01G1104200' => 'mdo', 'MD02G1205100' => 'mdo', 'MD04G1079200' => 'mdo', 'MD04G1131400' => 'mdo', 'MD07G1121600' => 'mdo', 'MD07G1157300' => 'mdo', 'MD07G1171000' => 'mdo', 'MD12G1144500' => 'mdo', 'Medtr1g094610' => 'mtr', 'Medtr4g021795' => 'mtr', 'Medtr4g023760' => 'mtr', 'Medtr7g118050' => 'mtr', 'MELO3C005582.2' => 'cme', 'MELO3C005989.2' => 'cme', 'MELO3C006192.2' => 'cme', 'MELO3C009248.2' => 'cme', 'MELO3C019817.2' => 'cme', 'Migut.B01625' => 'egut', 'Migut.B01915' => 'egut', 'Migut.F01721' => 'egut', 'Migut.J00314' => 'egut', 'MSTRG.20742' => 'ama', 'MSTRG.8134' => 'ama', 'Nitab4.5_0000096g0010' => 'nta', 'Nitab4.5_0000202g0030' => 'nta', 'Nitab4.5_0000216g0370' => 'nta', 'Nitab4.5_0000457g0230' => 'nta', 'Nitab4.5_0001702g0170' => 'nta', 'Nitab4.5_0003607g0010' => 'nta', 'Nitab4.5_0004917g0020' => 'nta', 'Nitab4.5_0007059g0010' => 'nta', 'Nitab4.5_0007184g0010' => 'nta', 'Nitab4.5_0007346g0020' => 'nta', 'Nn1g00410' => 'nnu', 'Nn1g01252' => 'nnu', 'Nn2g11168' => 'nnu', 'Nn2g13403' => 'nnu', 'Nn2g13760' => 'nnu', 'Nn4g26380' => 'nnu', 'Oeu000806.2' => 'oeu', 'Oeu005788.1' => 'oeu', 'Oeu006900.3' => 'oeu', 'Oeu007797.1' => 'oeu', 'Oeu011932.1' => 'oeu', 'Oeu022739.1' => 'oeu', 'Oeu037918.1' => 'oeu', 'Oeu055490.2' => 'oeu', 'Os01g0844400' => 'osa', 'Os02g0819100' => 'osa', 'Os03g0804300' => 'osa', 'Os05g0458000' => 'osa', 'Os07g0467800' => 'osa', 'Os12g0602200' => 'osa', 'Peaxi162Scf00013g03444' => 'pax', 'Peaxi162Scf00094g01120' => 'pax', 'Peaxi162Scf00191g01211' => 'pax', 'Peaxi162Scf00238g01110' => 'pax', 'Peaxi162Scf00330g00719' => 'pax', 'Peaxi162Scf00627g00018' => 'pax', 'PGR031G2686' => 'pgr', 'PGR042G0809' => 'pgr', 'PGR142G0193' => 'pgr', 'PGSC0003DMG400011066' => 'stu', 'PGSC0003DMG400012041' => 'stu', 'PGSC0003DMG400013678' => 'stu', 'PGSC0003DMG400023477' => 'stu', 'PGSC0003DMG400025956' => 'stu', 'PGSC0003DMG401019151' => 'stu', 'Phvul.006G116400' => 'pvu', 'Phvul.007G097300' => 'pvu', 'Phvul.010G015000' => 'pvu', 'Phvul.010G083900' => 'pvu', 'Potri.001G117100' => 'ptr', 'Potri.002G147300' => 'ptr', 'Potri.003G115600' => 'ptr', 'Potri.006G087400' => 'ptr', 'Potri.010G226100' => 'ptr', 'Potri.014G069200' => 'ptr', 'Potri.014G104000' => 'ptr', 'Potri.016G100200' => 'ptr', 'Pp3c10_20450' => 'ppa', 'Pp3c1_42400' => 'ppa', 'Pp3c3_24390' => 'ppa', 'Pp3c3_2860' => 'ppa', 'PRCOL_00003193' => 'pco', 'Prupe.2G144500' => 'ppe', 'Prupe.2G195700' => 'ppe', 'Prupe.2G209800' => 'ppe', 'Prupe.5G080000' => 'ppe', 'Prupe.6G257900' => 'ppe', 'Psat3g001160' => 'psa', 'Psat6g181880' => 'psa', 'Psat7g233720' => 'psa', 'PSO063G7587' => 'pso', 'PSO339G2145' => 'pso', 'PSO339G3369' => 'pso', 'PSO478G2747' => 'pso', 'PSO513G0140' => 'pso', 'PSO782G1614' => 'pso', 'PSO782G4889' => 'pso', 'PSO782G5485' => 'pso', 'PSO801G0241' => 'pso', 'QL07p048854' => 'qlo', 'QL08p046745' => 'qlo', 'QL08p052606' => 'qlo', 'QL08p053414' => 'qlo', 'QL08p054868' => 'qlo', 'RcHm_v2.0_Chr1g0350251' => 'rch', 'RcHm_v2.0_Chr1g0360851' => 'rch', 'RcHm_v2.0_Chr1g0362791' => 'rch', 'RcHm_v2.0_Chr3g0466281' => 'rch', 'RcHm_v2.0_Chr7g0201481' => 'rch', 'Rhsim01G0148600' => 'rsi', 'Rhsim05G0194400' => 'rsi', 'Rhsim07G0000700' => 'rsi', 'Rhsim07G0000800' => 'rsi', 'Rhsim07G0027900' => 'rsi', 'Rhsim09G0149500' => 'rsi', 'RhsimUnG0186900' => 'rsi', 'Sabra01G0089900' => 'sbr', 'Sabra02G0114700' => 'sbr', 'Sabra02G0116300' => 'sbr', 'Sabra03G0080100' => 'sbr', 'Sabra08G0024300' => 'sbr', 'Sabra10G0174300' => 'sbr', 'Sabra14G0048900' => 'sbr', 'Sabra14G0076500' => 'sbr', 'SalBow5G2513' => 'sbo', 'Sc01g0002300' => 'sci', 'Sc01g0004450' => 'sci', 'Sc06g0001680' => 'sci', 'Sc23g0003580' => 'sci', 'Sed0000913' => 'sed', 'Sed0001655' => 'sed', 'Sed0007745' => 'sed', 'Sed0010951' => 'sed', 'Sed0017599' => 'sed', 'Sed0021405' => 'sed', 'Sed0022810' => 'sed', 'SEGI_07099' => 'sgi', 'SEGI_11931' => 'sgi', 'SEGI_13187' => 'sgi', 'SEGI_29958' => 'sgi', 'SEGI_36351' => 'sgi', 'SGA_v2.0_scaffold126G33770' => 'sas', 'SGA_v2.0_scaffold153G37003' => 'sas', 'SGA_v2.0_scaffold2G01359' => 'sas', 'SGA_v2.0_scaffold5G03064' => 'sas', 'SGA_v2.0_scaffold95G28903' => 'sas', 'SHI12701' => 'shi', 'SHI26410' => 'shi', 'SHI38997' => 'shi', 'SHI53759' => 'shi', 'SHI53886' => 'shi', 'SHI54714' => 'shi', 'SMO011G0041' => 'smo', 'SMO146G0251' => 'smo', 'SMO160G0004' => 'smo', 'SMO174G0057' => 'smo', 'SMO244G0089' => 'smo', 'SMO296G0011' => 'smo', 'Solyc01g091280.3' => 'sly', 'Solyc05g047610.3' => 'sly', 'Solyc05g047640.3' => 'sly', 'Solyc05g055630.3' => 'sly', 'Solyc10g018160.2' => 'sly', 'Solyc10g084820.2' => 'sly', 'Solyc10g086565.2' => 'sly', 'Sopen01g037030' => 'spe', 'Sopen05g027920' => 'spe', 'Sopen05g034070' => 'spe', 'Sopen10g007260' => 'spe', 'Sopen10g034260' => 'spe', 'Sopen10g035950' => 'spe', 'Sp3g07710' => 'spa', 'Sp4g27420' => 'spa', 'Sp5g02450' => 'spa', 'Sp6g01280' => 'spa', 'Sp6g38480' => 'spa', 'Sp7g20780' => 'spa', 'TAR374G1413' => 'tar', 'TAR623G1777' => 'tar', 'TAR629G2370' => 'tar', 'TAR633G1759' => 'tar', 'TAR636G3387' => 'tar', 'THA.LOC104802447' => 'tha', 'THA.LOC104813916' => 'tha', 'THA.LOC104816423' => 'tha', 'THA.LOC104817246' => 'tha', 'THA.LOC104825895' => 'tha', 'Thecc.01G335200' => 'tca', 'Thecc.01G377400' => 'tca', 'Thecc.03G262200' => 'tca', 'Thecc.05G036800' => 'tca', 'Thecc.10G080500' => 'tca', 'Thecc.10G080800' => 'tca', 'Thhalv10001560m.g' => 'esa', 'Thhalv10006120m.g' => 'esa', 'Thhalv10014375m.g' => 'esa', 'Thhalv10021264m.g' => 'esa', 'Thhalv10028856m.g' => 'esa', 'TPR.G1914' => 'tpr', 'TPR.G4757' => 'tpr', 'TPR.G5595' => 'tpr', 'TWI14G0952' => 'twi', 'TWI14G1307' => 'twi', 'TWI38G2143' => 'twi', 'TWI59G0826' => 'twi', 'TWI77G0527' => 'twi', 'TWI81G0150' => 'twi', 'unitig_21.g21018' => 'ugi', 'unitig_26.g9725' => 'ugi', 'unitig_744.g24653' => 'ugi', 'unitig_749.g13778' => 'ugi', 'unitig_899.g15035' => 'ugi', 'vmacro04296' => 'vma', 'vmacro04852' => 'vma', 'vmacro13404' => 'vma', 'vmacro20169' => 'vma', 'vmacro21014' => 'vma', 'VMungo0331G0237' => 'vmu', 'VMungo0331G0706' => 'vmu', 'VMungo0331G1361' => 'vmu', 'VMungo0331G1489' => 'vmu', 'VMungo0540G1037' => 'vmu', 'VMungo0720G2487' => 'vmu', 'VMungo0720G2721' => 'vmu', 'Zm00001eb086860' => 'zma', 'Zm00001eb104760' => 'zma', 'Zm00001eb148220' => 'zma', 'Zm00001eb259030' => 'zma', 'Zm00001eb289590' => 'zma', 'Zm00001eb420150' => 'zma' ), 'gf_id' => 'HOM05D000968', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000968' ), 'data_identifier' => 'HOM05D000968', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000968', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p31690' => 'bna', 'A03p36040' => 'bna', 'A03p53730' => 'bna', 'A04p01410' => 'bna', 'A05p05420' => 'bna', 'A05p39630' => 'bna', 'A05p39640' => 'bna', 'A09p00970' => 'bna', 'A09p53060' => 'bna', 'A10p31890' => 'bna', 'Aa31LG10G15040' => 'aar', 'Aa31LG1G21090' => 'aar', 'Aa31LG1G26900' => 'aar', 'Aa31LG3G1820' => 'aar', 'Aa31LG5G1100' => 'aar', 'Aa31LG6G4740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2265' => 'aag', 'Actinidia07998' => 'ach', 'Actinidia11266' => 'ach', 'Actinidia12682' => 'ach', 'Actinidia26479' => 'ach', 'Actinidia31406' => 'ach', 'Actinidia32437' => 'ach', 'Actinidia38862' => 'ach', 'Ah.05g174230' => 'amhyb', 'Ah.05g179070' => 'amhyb', 'Ah.05g179090' => 'amhyb', 'Ah.12g059950' => 'amhyb', 'AL3G20480' => 'aly', 'AL4G44520' => 'aly', 'AL5G43110' => 'aly', 'AL6G13890' => 'aly', 'AL6G52620' => 'aly', 'AL7G30830' => 'aly', 'Aqoxy1G00899' => 'aox', 'Aqoxy5G04333' => 'aox', 'Aqoxy7G00641' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3IZ0NN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4EF6AW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W9P8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79GA3M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C43NQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFCU6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G95YVJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCHK29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LU1UG8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX91RN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGB4B1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8DA0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9H7JI' => 'arhy', 'AT3G09320' => 'ath', 'AT3G60800' => 'ath', 'AT4G00840' => 'ath', 'AT4G22750' => 'ath', 'AT5G04270' => 'ath', 'ATR0090G003' => 'atr', 'ATR0559G349' => 'atr', 'ATR0680G261' => 'atr', 'ATR0810G048' => 'atr', 'Atru.chr12.831' => 'acertr', 'Atru.chr5.303' => 'acertr', 'Atru.chr5.748' => 'acertr', 'Atru.chr8.1999' => 'acertr', 'Atru.chr9.1436' => 'acertr', 'AUR62004211' => 'cqu', 'AUR62004548' => 'cqu', 'AUR62013637' => 'cqu', 'AUR62022662' => 'cqu', 'AUR62025777' => 'cqu', 'AUR62042386' => 'cqu', 'BcaB01g02310' => 'bca', 'BcaB01g06062' => 'bca', 'BcaB02g08975' => 'bca', 'BcaB02g08980' => 'bca', 'BcaC01g04228' => 'bca', 'BcaC01g06830' => 'bca', 'BcaC02g10186' => 'bca', 'BcaC02g12214' => 'bca', 'BcaC04g24101' => 'bca', 'BcaC05g29520' => 'bca', 'BcaC05g29661' => 'bca', 'BcaC06g32130' => 'bca', 'BcaC06g32131' => 'bca', 'BcaC07g40601' => 'bca', 'BcaC07g42641' => 'bca', 'BcaNung01038' => 'bca', 'BcaNung01676' => 'bca', 'BcaNung02480' => 'bca', 'BcaNung07376' => 'bca', 'BolC3t16146H' => 'bol', 'BolC3t16637H' => 'bol', 'BolC4t22257H' => 'bol', 'BolC4t24728H' => 'bol', 'BolC5t34517H' => 'bol', 'BolC7t45703H' => 'bol', 'BolC8t51166H' => 'bol', 'BolC9t53038H' => 'bol', 'BolC9t60000H' => 'bol', 'BraA01t01345Z' => 'bra', 'BraA01t01346Z' => 'bra', 'BraA01t01348Z' => 'bra', 'BraA03t12347Z' => 'bra', 'BraA03t12775Z' => 'bra', 'BraA03t14439Z' => 'bra', 'BraA04t15860Z' => 'bra', 'BraA05t19511Z' => 'bra', 'BraA05t22746Z' => 'bra', 'BraA09t35767Z' => 'bra', 'BraA09t40732Z' => 'bra', 'BraA10t45233Z' => 'bra', 'C03p38720' => 'bna', 'C03p43680' => 'bna', 'C04p06350' => 'bna', 'C04p31800' => 'bna', 'C05p58680' => 'bna', 'C07p52110' => 'bna', 'C08p35760' => 'bna', 'C09p01050' => 'bna', 'C09p72600' => 'bna', 'CAN.G106.2' => 'can', 'CAN.G1482.1' => 'can', 'CAN.G324.12' => 'can', 'CAN.G388.20' => 'can', 'CAN.G412.7' => 'can', 'CAN.G694.32' => 'can', 'CAN.G92.12' => 'can', 'CANSAT11G2353' => 'cansat', 'CANSAT21G1398' => 'cansat', 'CANSAT56G2456' => 'cansat', 'CANSAT56G3031' => 'cansat', 'CANSAT56G4539' => 'cansat', 'CARHR083680' => 'chi', 'CARHR171190' => 'chi', 'CARHR209010' => 'chi', 'CARHR229680' => 'chi', 'CARHR249490' => 'chi', 'Carub.0003s0844' => 'cru', 'Carub.0005s2755' => 'cru', 'Carub.0006s0322' => 'cru', 'Carub.0006s3586' => 'cru', 'Carub.0007s1855' => 'cru', 'Ca_07808_v3' => 'car', 'Ca_09535_v3' => 'car', 'Ca_10548_v3' => 'car', 'Ca_19913_v3' => 'car', 'Ca_19916_v3' => 'car', 'Ca_19975_v3' => 'car', 'CBR_g22876' => 'cbr', 'CBR_g22879' => 'cbr', 'CBR_g38491' => 'cbr', 'CBR_g54185' => 'cbr', 'CBR_g54190' => 'cbr', 'Cc02_g11020' => 'ccan', 'Cc02_g23920' => 'ccan', 'Cc02_g39860' => 'ccan', 'Cc02_g39870' => 'ccan', 'Cc03_g06760' => 'ccan', 'Cc06_g02450' => 'ccan', 'Cc09_g09450' => 'ccan', 'CDE02G1959' => 'cde', 'CDE04G0600' => 'cde', 'CDE07G1996' => 'cde', 'CDE07G2078' => 'cde', 'CDE11G0611' => 'cde', 'Cfa001683' => 'cfa', 'Cfa001734' => 'cfa', 'Cfa001737' => 'cfa', 'Cfa003751' => 'cfa', 'Cfa012019' => 'cfa', 'Cfa017353' => 'cfa', 'Cfa017732' => 'cfa', 'Cfa022464' => 'cfa', 'Ciclev10012400m.g' => 'ccl', 'Ciclev10021242m.g' => 'ccl', 'Ciclev10021302m.g' => 'ccl', 'Ciclev10021463m.g' => 'ccl', 'Ciclev10032359m.g' => 'ccl', 'CiPaw.01G081000' => 'cil', 'CiPaw.01G262500' => 'cil', 'CiPaw.01G269800' => 'cil', 'CiPaw.02G168400' => 'cil', 'CiPaw.05G119500' => 'cil', 'CiPaw.11G147300' => 'cil', 'ClCG01G003630' => 'cla', 'ClCG05G000510' => 'cla', 'ClCG05G002300' => 'cla', 'ClCG08G007650' => 'cla', 'ClCG10G021250' => 'cla', 'COL.COLO4_06218' => 'col', 'COL.COLO4_12538' => 'col', 'COL.COLO4_14775' => 'col', 'COL.COLO4_23875' => 'col', 'Cpa.g.sc141.16' => 'cpa', 'Cpa.g.sc169.16' => 'cpa', 'Cpa.g.sc244.4' => 'cpa', 'Cpa.g.sc244.5' => 'cpa', 'Cpa.g.sc29.87' => 'cpa', 'Cpa.g.sc53.115' => 'cpa', 'Cre03.g207502' => 'cre', 'Cre06.g277000' => 'cre', 'Cre09.g394050' => 'cre', 'CsaV3_3G007680' => 'csa', 'CsaV3_3G009710' => 'csa', 'CsaV3_3G034790' => 'csa', 'CsaV3_5G003750' => 'csa', 'CsaV3_6G036620' => 'csa', 'CSS0002288' => 'camsi', 'CSS0011250' => 'camsi', 'CSS0021619' => 'camsi', 'CSS0046701' => 'camsi', 'DCAR_006420' => 'dca', 'DCAR_006865' => 'dca', 'DCAR_008558' => 'dca', 'DCAR_028754' => 'dca', 'DCAR_028755' => 'dca', 'Dinv31218' => 'din', 'Dinv32371' => 'din', 'Dinv34250' => 'din', 'Dinv37156' => 'din', 'Dinv43704' => 'din', 'Duzib093G1811' => 'dzi', 'Duzib106G1622' => 'dzi', 'Duzib114G0504' => 'dzi', 'Duzib128G0338' => 'dzi', 'Duzib128G1577' => 'dzi', 'Duzib133G0104' => 'dzi', 'Duzib133G1080' => 'dzi', 'Duzib138G0324' => 'dzi', 'Duzib138G0394' => 'dzi', 'Duzib205G0122' => 'dzi', 'Duzib268G1020' => 'dzi', 'Duzib268G1359' => 'dzi', 'ECA232G3929' => 'eca', 'ECA236G2210' => 'eca', 'ECA236G2287' => 'eca', 'ECA240G4568' => 'eca', 'ECA247G0894' => 'eca', 'EL10Ac1g00200' => 'bvu', 'EL10Ac1g00886' => 'bvu', 'EL10As1g23091' => 'bvu', 'EL10As1g23092' => 'bvu', 'Eucgr.A01284' => 'egr', 'Eucgr.A01285' => 'egr', 'Eucgr.D02456' => 'egr', 'Eucgr.E00018' => 'egr', 'Eucgr.E01439' => 'egr', 'Eucgr.G02859' => 'egr', 'FAN01G0168' => 'fan', 'FAN01G0453' => 'fan', 'FAN01G2761' => 'fan', 'FAN02G1239' => 'fan', 'FAN03G0645' => 'fan', 'FAN03G2707' => 'fan', 'FAN03G2978' => 'fan', 'FAN04G0227' => 'fan', 'FAN06G0091' => 'fan', 'FAN06G1418' => 'fan', 'FAN06G1512' => 'fan', 'FAN06G1986' => 'fan', 'FAN06G2905' => 'fan', 'FAN06G4325' => 'fan', 'FAN08G0033' => 'fan', 'FAN09G0642' => 'fan', 'FAN10G1763' => 'fan', 'FAN10G2026' => 'fan', 'FAN10G2513' => 'fan', 'FAN10G3402' => 'fan', 'FAN10G3564' => 'fan', 'FAN10G3987' => 'fan', 'FAN13G1490' => 'fan', 'FAN14G5857' => 'fan', 'FAN18G1188' => 'fan', 'FvH4_5g00750' => 'fve', 'FvH4_6g13410' => 'fve', 'FvH4_7g11740' => 'fve', 'FvH4_7g17410' => 'fve', 'FvH4_7g18860' => 'fve', 'Glyma.01G099100' => 'gma', 'Glyma.01G142300' => 'gma', 'Glyma.03G025500' => 'gma', 'Glyma.03G069700' => 'gma', 'Glyma.03G260000' => 'gma', 'Glyma.09G269800' => 'gma', 'Glyma.10G208700' => 'gma', 'Glyma.18G220400' => 'gma', 'Glyma.20G182000' => 'gma', 'Gohir.A01G221726' => 'ghi', 'Gohir.A07G134600' => 'ghi', 'Gohir.A07G146000' => 'ghi', 'Gohir.A08G173900' => 'ghi', 'Gohir.A09G194900' => 'ghi', 'Gohir.A10G204100' => 'ghi', 'Gohir.A11G080600' => 'ghi', 'Gohir.A11G327500' => 'ghi', 'Gohir.A12G101800' => 'ghi', 'Gohir.D01G211200' => 'ghi', 'Gohir.D07G139200' => 'ghi', 'Gohir.D07G152100' => 'ghi', 'Gohir.D08G192600' => 'ghi', 'Gohir.D09G189200' => 'ghi', 'Gohir.D10G212000' => 'ghi', 'Gohir.D11G085200' => 'ghi', 'Gohir.D11G346400' => 'ghi', 'Gohir.D12G104800' => 'ghi', 'Gorai.001G151300' => 'gra', 'Gorai.001G174100' => 'gra', 'Gorai.002G257000' => 'gra', 'Gorai.004G202600' => 'gra', 'Gorai.007G090900' => 'gra', 'Gorai.007G376700' => 'gra', 'Gorai.008G114100' => 'gra', 'Gorai.011G237900' => 'gra', 'GSVIVG01005450001' => 'vvi', 'GSVIVG01016232001' => 'vvi', 'GSVIVG01026157001' => 'vvi', 'GSVIVG01027419001' => 'vvi', 'GSVIVG01027631001' => 'vvi', 'GSVIVG01034143001' => 'vvi', 'HanXRQChr03g0093921' => 'han', 'HanXRQChr04g0120001' => 'han', 'HanXRQChr04g0122561' => 'han', 'HanXRQChr09g0246851' => 'han', 'HanXRQChr10g0293311' => 'han', 'HanXRQChr13g0425231' => 'han', 'HanXRQChr16g0532571' => 'han', 'Haze_09050' => 'cav', 'Haze_15715' => 'cav', 'Haze_15716' => 'cav', 'Haze_16803' => 'cav', 'Haze_16850' => 'cav', 'Hma1.2p1_0301F.1_g118655' => 'hma', 'Hma1.2p1_0309F.1_g120590' => 'hma', 'Hma1.2p1_0936F.1_g238900' => 'hma', 'Hma1.2p1_3552F.1_g336740' => 'hma', 'HPP92_003520' => 'vpl', 'HPP92_006628' => 'vpl', 'HPP92_006645' => 'vpl', 'HPP92_014669' => 'vpl', 'HPP92_015077' => 'vpl', 'Hund16742' => 'sun', 'Hund17022' => 'sun', 'Lalb_Chr02g0152131' => 'lal', 'Lalb_Chr05g0225371' => 'lal', 'Lalb_Chr07g0189841' => 'lal', 'Lalb_Chr07g0192961' => 'lal', 'Lalb_Chr12g0208221' => 'lal', 'Lalb_Chr13g0291211' => 'lal', 'Lalb_Chr13g0291781' => 'lal', 'Lalb_Chr18g0044651' => 'lal', 'Lalb_Chr21g0313731' => 'lal', 'Lj1g0022533' => 'lja', 'Lj2A18T50' => 'lonja', 'Lj2A92G93' => 'lonja', 'Lj3A965T73' => 'lonja', 'Lj3g0000673' => 'lja', 'Lj3g0002666' => 'lja', 'Lj4g0016985' => 'lja', 'Lj5g0003625' => 'lja', 'Lj7A529G36' => 'lonja', 'Lj9A569T49' => 'lonja', 'Lj9A604T63' => 'lonja', 'Lsat_1_v5_gn_3_132060' => 'lsa', 'Lsat_1_v5_gn_4_68941' => 'lsa', 'Lsat_1_v5_gn_5_95580' => 'lsa', 'Lsat_1_v5_gn_7_161' => 'lsa', 'Lsat_1_v5_gn_7_7041' => 'lsa', 'Lsat_1_v5_gn_9_33481' => 'lsa', 'Lsat_1_v5_gn_9_68260' => 'lsa', 'Manes.01G073100' => 'mes', 'Manes.01G266300' => 'mes', 'Manes.02G033300' => 'mes', 'Manes.05G017900' => 'mes', 'Manes.05G046100' => 'mes', 'Manes.08G080900' => 'mes', 'Manes.10G049400' => 'mes', 'Mapoly0009s0186' => 'mpo', 'Mapoly0036s0118' => 'mpo', 'Mapoly0101s0046' => 'mpo', 'MBI04_g30218_MAGBIO' => 'mbi', 'MBI04_g35564_MAGBIO' => 'mbi', 'MBI12_g34011_MAGBIO' => 'mbi', 'MBI14_g04655_MAGBIO' => 'mbi', 'MCO07G653' => 'mco', 'MCO10G173' => 'mco', 'MD01G1087100' => 'mdo', 'MD01G1104200' => 'mdo', 'MD02G1205100' => 'mdo', 'MD04G1079200' => 'mdo', 'MD04G1131400' => 'mdo', 'MD07G1121600' => 'mdo', 'MD07G1157300' => 'mdo', 'MD07G1171000' => 'mdo', 'MD12G1144500' => 'mdo', 'Medtr1g094610' => 'mtr', 'Medtr4g021795' => 'mtr', 'Medtr4g023760' => 'mtr', 'Medtr7g118050' => 'mtr', 'MELO3C005582.2' => 'cme', 'MELO3C005989.2' => 'cme', 'MELO3C006192.2' => 'cme', 'MELO3C009248.2' => 'cme', 'MELO3C019817.2' => 'cme', 'Migut.B01625' => 'egut', 'Migut.B01915' => 'egut', 'Migut.F01721' => 'egut', 'Migut.J00314' => 'egut', 'MSTRG.20742' => 'ama', 'MSTRG.8134' => 'ama', 'Nitab4.5_0000096g0010' => 'nta', 'Nitab4.5_0000202g0030' => 'nta', 'Nitab4.5_0000216g0370' => 'nta', 'Nitab4.5_0000457g0230' => 'nta', 'Nitab4.5_0001702g0170' => 'nta', 'Nitab4.5_0003607g0010' => 'nta', 'Nitab4.5_0004917g0020' => 'nta', 'Nitab4.5_0007059g0010' => 'nta', 'Nitab4.5_0007184g0010' => 'nta', 'Nitab4.5_0007346g0020' => 'nta', 'Nn1g00410' => 'nnu', 'Nn1g01252' => 'nnu', 'Nn2g11168' => 'nnu', 'Nn2g13403' => 'nnu', 'Nn2g13760' => 'nnu', 'Nn4g26380' => 'nnu', 'Oeu000806.2' => 'oeu', 'Oeu005788.1' => 'oeu', 'Oeu006900.3' => 'oeu', 'Oeu007797.1' => 'oeu', 'Oeu011932.1' => 'oeu', 'Oeu022739.1' => 'oeu', 'Oeu037918.1' => 'oeu', 'Oeu055490.2' => 'oeu', 'Os01g0844400' => 'osa', 'Os02g0819100' => 'osa', 'Os03g0804300' => 'osa', 'Os05g0458000' => 'osa', 'Os07g0467800' => 'osa', 'Os12g0602200' => 'osa', 'Peaxi162Scf00013g03444' => 'pax', 'Peaxi162Scf00094g01120' => 'pax', 'Peaxi162Scf00191g01211' => 'pax', 'Peaxi162Scf00238g01110' => 'pax', 'Peaxi162Scf00330g00719' => 'pax', 'Peaxi162Scf00627g00018' => 'pax', 'PGR031G2686' => 'pgr', 'PGR042G0809' => 'pgr', 'PGR142G0193' => 'pgr', 'PGSC0003DMG400011066' => 'stu', 'PGSC0003DMG400012041' => 'stu', 'PGSC0003DMG400013678' => 'stu', 'PGSC0003DMG400023477' => 'stu', 'PGSC0003DMG400025956' => 'stu', 'PGSC0003DMG401019151' => 'stu', 'Phvul.006G116400' => 'pvu', 'Phvul.007G097300' => 'pvu', 'Phvul.010G015000' => 'pvu', 'Phvul.010G083900' => 'pvu', 'Potri.001G117100' => 'ptr', 'Potri.002G147300' => 'ptr', 'Potri.003G115600' => 'ptr', 'Potri.006G087400' => 'ptr', 'Potri.010G226100' => 'ptr', 'Potri.014G069200' => 'ptr', 'Potri.014G104000' => 'ptr', 'Potri.016G100200' => 'ptr', 'Pp3c10_20450' => 'ppa', 'Pp3c1_42400' => 'ppa', 'Pp3c3_24390' => 'ppa', 'Pp3c3_2860' => 'ppa', 'PRCOL_00003193' => 'pco', 'Prupe.2G144500' => 'ppe', 'Prupe.2G195700' => 'ppe', 'Prupe.2G209800' => 'ppe', 'Prupe.5G080000' => 'ppe', 'Prupe.6G257900' => 'ppe', 'Psat3g001160' => 'psa', 'Psat6g181880' => 'psa', 'Psat7g233720' => 'psa', 'PSO063G7587' => 'pso', 'PSO339G2145' => 'pso', 'PSO339G3369' => 'pso', 'PSO478G2747' => 'pso', 'PSO513G0140' => 'pso', 'PSO782G1614' => 'pso', 'PSO782G4889' => 'pso', 'PSO782G5485' => 'pso', 'PSO801G0241' => 'pso', 'QL07p048854' => 'qlo', 'QL08p046745' => 'qlo', 'QL08p052606' => 'qlo', 'QL08p053414' => 'qlo', 'QL08p054868' => 'qlo', 'RcHm_v2.0_Chr1g0350251' => 'rch', 'RcHm_v2.0_Chr1g0360851' => 'rch', 'RcHm_v2.0_Chr1g0362791' => 'rch', 'RcHm_v2.0_Chr3g0466281' => 'rch', 'RcHm_v2.0_Chr7g0201481' => 'rch', 'Rhsim01G0148600' => 'rsi', 'Rhsim05G0194400' => 'rsi', 'Rhsim07G0000700' => 'rsi', 'Rhsim07G0000800' => 'rsi', 'Rhsim07G0027900' => 'rsi', 'Rhsim09G0149500' => 'rsi', 'RhsimUnG0186900' => 'rsi', 'Sabra01G0089900' => 'sbr', 'Sabra02G0114700' => 'sbr', 'Sabra02G0116300' => 'sbr', 'Sabra03G0080100' => 'sbr', 'Sabra08G0024300' => 'sbr', 'Sabra10G0174300' => 'sbr', 'Sabra14G0048900' => 'sbr', 'Sabra14G0076500' => 'sbr', 'SalBow5G2513' => 'sbo', 'Sc01g0002300' => 'sci', 'Sc01g0004450' => 'sci', 'Sc06g0001680' => 'sci', 'Sc23g0003580' => 'sci', 'Sed0000913' => 'sed', 'Sed0001655' => 'sed', 'Sed0007745' => 'sed', 'Sed0010951' => 'sed', 'Sed0017599' => 'sed', 'Sed0021405' => 'sed', 'Sed0022810' => 'sed', 'SEGI_07099' => 'sgi', 'SEGI_11931' => 'sgi', 'SEGI_13187' => 'sgi', 'SEGI_29958' => 'sgi', 'SEGI_36351' => 'sgi', 'SGA_v2.0_scaffold126G33770' => 'sas', 'SGA_v2.0_scaffold153G37003' => 'sas', 'SGA_v2.0_scaffold2G01359' => 'sas', 'SGA_v2.0_scaffold5G03064' => 'sas', 'SGA_v2.0_scaffold95G28903' => 'sas', 'SHI12701' => 'shi', 'SHI26410' => 'shi', 'SHI38997' => 'shi', 'SHI53759' => 'shi', 'SHI53886' => 'shi', 'SHI54714' => 'shi', 'SMO011G0041' => 'smo', 'SMO146G0251' => 'smo', 'SMO160G0004' => 'smo', 'SMO174G0057' => 'smo', 'SMO244G0089' => 'smo', 'SMO296G0011' => 'smo', 'Solyc01g091280.3' => 'sly', 'Solyc05g047610.3' => 'sly', 'Solyc05g047640.3' => 'sly', 'Solyc05g055630.3' => 'sly', 'Solyc10g018160.2' => 'sly', 'Solyc10g084820.2' => 'sly', 'Solyc10g086565.2' => 'sly', 'Sopen01g037030' => 'spe', 'Sopen05g027920' => 'spe', 'Sopen05g034070' => 'spe', 'Sopen10g007260' => 'spe', 'Sopen10g034260' => 'spe', 'Sopen10g035950' => 'spe', 'Sp3g07710' => 'spa', 'Sp4g27420' => 'spa', 'Sp5g02450' => 'spa', 'Sp6g01280' => 'spa', 'Sp6g38480' => 'spa', 'Sp7g20780' => 'spa', 'TAR374G1413' => 'tar', 'TAR623G1777' => 'tar', 'TAR629G2370' => 'tar', 'TAR633G1759' => 'tar', 'TAR636G3387' => 'tar', 'THA.LOC104802447' => 'tha', 'THA.LOC104813916' => 'tha', 'THA.LOC104816423' => 'tha', 'THA.LOC104817246' => 'tha', 'THA.LOC104825895' => 'tha', 'Thecc.01G335200' => 'tca', 'Thecc.01G377400' => 'tca', 'Thecc.03G262200' => 'tca', 'Thecc.05G036800' => 'tca', 'Thecc.10G080500' => 'tca', 'Thecc.10G080800' => 'tca', 'Thhalv10001560m.g' => 'esa', 'Thhalv10006120m.g' => 'esa', 'Thhalv10014375m.g' => 'esa', 'Thhalv10021264m.g' => 'esa', 'Thhalv10028856m.g' => 'esa', 'TPR.G1914' => 'tpr', 'TPR.G4757' => 'tpr', 'TPR.G5595' => 'tpr', 'TWI14G0952' => 'twi', 'TWI14G1307' => 'twi', 'TWI38G2143' => 'twi', 'TWI59G0826' => 'twi', 'TWI77G0527' => 'twi', 'TWI81G0150' => 'twi', 'unitig_21.g21018' => 'ugi', 'unitig_26.g9725' => 'ugi', 'unitig_744.g24653' => 'ugi', 'unitig_749.g13778' => 'ugi', 'unitig_899.g15035' => 'ugi', 'vmacro04296' => 'vma', 'vmacro04852' => 'vma', 'vmacro13404' => 'vma', 'vmacro20169' => 'vma', 'vmacro21014' => 'vma', 'VMungo0331G0237' => 'vmu', 'VMungo0331G0706' => 'vmu', 'VMungo0331G1361' => 'vmu', 'VMungo0331G1489' => 'vmu', 'VMungo0540G1037' => 'vmu', 'VMungo0720G2487' => 'vmu', 'VMungo0720G2721' => 'vmu', 'Zm00001eb086860' => 'zma', 'Zm00001eb104760' => 'zma', 'Zm00001eb148220' => 'zma', 'Zm00001eb259030' => 'zma', 'Zm00001eb289590' => 'zma', 'Zm00001eb420150' => 'zma' ) $gf_id = 'HOM05D000968' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000968' ) $data_identifier = 'HOM05D000968' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 19, 'bol' => (int) 9, 'bra' => (int) 12, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 5, 'ccan' => (int) 7, 'cde' => (int) 5, 'cfa' => (int) 8, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 4, 'dca' => (int) 5, 'din' => (int) 5, 'dzi' => (int) 12, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 25, 'fve' => (int) 5, 'gma' => (int) 9, 'ghi' => (int) 18, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 7, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 5, 'sun' => (int) 2, 'lal' => (int) 9, 'lja' => (int) 5, 'lonja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 9, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 2, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 3, 'stu' => (int) 6, 'pvu' => (int) 4, 'ptr' => (int) 8, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 3, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 1, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 5, 'sas' => (int) 5, 'shi' => (int) 6, 'smo' => (int) 6, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 3, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420150' $species_info = array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ) $local_species = 'col' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000968', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p31690' => 'bna', 'A03p36040' => 'bna', 'A03p53730' => 'bna', 'A04p01410' => 'bna', 'A05p05420' => 'bna', 'A05p39630' => 'bna', 'A05p39640' => 'bna', 'A09p00970' => 'bna', 'A09p53060' => 'bna', 'A10p31890' => 'bna', 'Aa31LG10G15040' => 'aar', 'Aa31LG1G21090' => 'aar', 'Aa31LG1G26900' => 'aar', 'Aa31LG3G1820' => 'aar', 'Aa31LG5G1100' => 'aar', 'Aa31LG6G4740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2265' => 'aag', 'Actinidia07998' => 'ach', 'Actinidia11266' => 'ach', 'Actinidia12682' => 'ach', 'Actinidia26479' => 'ach', 'Actinidia31406' => 'ach', 'Actinidia32437' => 'ach', 'Actinidia38862' => 'ach', 'Ah.05g174230' => 'amhyb', 'Ah.05g179070' => 'amhyb', 'Ah.05g179090' => 'amhyb', 'Ah.12g059950' => 'amhyb', 'AL3G20480' => 'aly', 'AL4G44520' => 'aly', 'AL5G43110' => 'aly', 'AL6G13890' => 'aly', 'AL6G52620' => 'aly', 'AL7G30830' => 'aly', 'Aqoxy1G00899' => 'aox', 'Aqoxy5G04333' => 'aox', 'Aqoxy7G00641' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3IZ0NN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4EF6AW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W9P8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79GA3M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C43NQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFCU6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G95YVJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCHK29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LU1UG8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX91RN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGB4B1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8DA0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9H7JI' => 'arhy', 'AT3G09320' => 'ath', 'AT3G60800' => 'ath', 'AT4G00840' => 'ath', 'AT4G22750' => 'ath', 'AT5G04270' => 'ath', 'ATR0090G003' => 'atr', 'ATR0559G349' => 'atr', 'ATR0680G261' => 'atr', 'ATR0810G048' => 'atr', 'Atru.chr12.831' => 'acertr', 'Atru.chr5.303' => 'acertr', 'Atru.chr5.748' => 'acertr', 'Atru.chr8.1999' => 'acertr', 'Atru.chr9.1436' => 'acertr', 'AUR62004211' => 'cqu', 'AUR62004548' => 'cqu', 'AUR62013637' => 'cqu', 'AUR62022662' => 'cqu', 'AUR62025777' => 'cqu', 'AUR62042386' => 'cqu', 'BcaB01g02310' => 'bca', 'BcaB01g06062' => 'bca', 'BcaB02g08975' => 'bca', 'BcaB02g08980' => 'bca', 'BcaC01g04228' => 'bca', 'BcaC01g06830' => 'bca', 'BcaC02g10186' => 'bca', 'BcaC02g12214' => 'bca', 'BcaC04g24101' => 'bca', 'BcaC05g29520' => 'bca', 'BcaC05g29661' => 'bca', 'BcaC06g32130' => 'bca', 'BcaC06g32131' => 'bca', 'BcaC07g40601' => 'bca', 'BcaC07g42641' => 'bca', 'BcaNung01038' => 'bca', 'BcaNung01676' => 'bca', 'BcaNung02480' => 'bca', 'BcaNung07376' => 'bca', 'BolC3t16146H' => 'bol', 'BolC3t16637H' => 'bol', 'BolC4t22257H' => 'bol', 'BolC4t24728H' => 'bol', 'BolC5t34517H' => 'bol', 'BolC7t45703H' => 'bol', 'BolC8t51166H' => 'bol', 'BolC9t53038H' => 'bol', 'BolC9t60000H' => 'bol', 'BraA01t01345Z' => 'bra', 'BraA01t01346Z' => 'bra', 'BraA01t01348Z' => 'bra', 'BraA03t12347Z' => 'bra', 'BraA03t12775Z' => 'bra', 'BraA03t14439Z' => 'bra', 'BraA04t15860Z' => 'bra', 'BraA05t19511Z' => 'bra', 'BraA05t22746Z' => 'bra', 'BraA09t35767Z' => 'bra', 'BraA09t40732Z' => 'bra', 'BraA10t45233Z' => 'bra', 'C03p38720' => 'bna', 'C03p43680' => 'bna', 'C04p06350' => 'bna', 'C04p31800' => 'bna', 'C05p58680' => 'bna', 'C07p52110' => 'bna', 'C08p35760' => 'bna', 'C09p01050' => 'bna', 'C09p72600' => 'bna', 'CAN.G106.2' => 'can', 'CAN.G1482.1' => 'can', 'CAN.G324.12' => 'can', 'CAN.G388.20' => 'can', 'CAN.G412.7' => 'can', 'CAN.G694.32' => 'can', 'CAN.G92.12' => 'can', 'CANSAT11G2353' => 'cansat', 'CANSAT21G1398' => 'cansat', 'CANSAT56G2456' => 'cansat', 'CANSAT56G3031' => 'cansat', 'CANSAT56G4539' => 'cansat', 'CARHR083680' => 'chi', 'CARHR171190' => 'chi', 'CARHR209010' => 'chi', 'CARHR229680' => 'chi', 'CARHR249490' => 'chi', 'Carub.0003s0844' => 'cru', 'Carub.0005s2755' => 'cru', 'Carub.0006s0322' => 'cru', 'Carub.0006s3586' => 'cru', 'Carub.0007s1855' => 'cru', 'Ca_07808_v3' => 'car', 'Ca_09535_v3' => 'car', 'Ca_10548_v3' => 'car', 'Ca_19913_v3' => 'car', 'Ca_19916_v3' => 'car', 'Ca_19975_v3' => 'car', 'CBR_g22876' => 'cbr', 'CBR_g22879' => 'cbr', 'CBR_g38491' => 'cbr', 'CBR_g54185' => 'cbr', 'CBR_g54190' => 'cbr', 'Cc02_g11020' => 'ccan', 'Cc02_g23920' => 'ccan', 'Cc02_g39860' => 'ccan', 'Cc02_g39870' => 'ccan', 'Cc03_g06760' => 'ccan', 'Cc06_g02450' => 'ccan', 'Cc09_g09450' => 'ccan', 'CDE02G1959' => 'cde', 'CDE04G0600' => 'cde', 'CDE07G1996' => 'cde', 'CDE07G2078' => 'cde', 'CDE11G0611' => 'cde', 'Cfa001683' => 'cfa', 'Cfa001734' => 'cfa', 'Cfa001737' => 'cfa', 'Cfa003751' => 'cfa', 'Cfa012019' => 'cfa', 'Cfa017353' => 'cfa', 'Cfa017732' => 'cfa', 'Cfa022464' => 'cfa', 'Ciclev10012400m.g' => 'ccl', 'Ciclev10021242m.g' => 'ccl', 'Ciclev10021302m.g' => 'ccl', 'Ciclev10021463m.g' => 'ccl', 'Ciclev10032359m.g' => 'ccl', 'CiPaw.01G081000' => 'cil', 'CiPaw.01G262500' => 'cil', 'CiPaw.01G269800' => 'cil', 'CiPaw.02G168400' => 'cil', 'CiPaw.05G119500' => 'cil', 'CiPaw.11G147300' => 'cil', 'ClCG01G003630' => 'cla', 'ClCG05G000510' => 'cla', 'ClCG05G002300' => 'cla', 'ClCG08G007650' => 'cla', 'ClCG10G021250' => 'cla', 'COL.COLO4_06218' => 'col', 'COL.COLO4_12538' => 'col', 'COL.COLO4_14775' => 'col', 'COL.COLO4_23875' => 'col', 'Cpa.g.sc141.16' => 'cpa', 'Cpa.g.sc169.16' => 'cpa', 'Cpa.g.sc244.4' => 'cpa', 'Cpa.g.sc244.5' => 'cpa', 'Cpa.g.sc29.87' => 'cpa', 'Cpa.g.sc53.115' => 'cpa', 'Cre03.g207502' => 'cre', 'Cre06.g277000' => 'cre', 'Cre09.g394050' => 'cre', 'CsaV3_3G007680' => 'csa', 'CsaV3_3G009710' => 'csa', 'CsaV3_3G034790' => 'csa', 'CsaV3_5G003750' => 'csa', 'CsaV3_6G036620' => 'csa', 'CSS0002288' => 'camsi', 'CSS0011250' => 'camsi', 'CSS0021619' => 'camsi', 'CSS0046701' => 'camsi', 'DCAR_006420' => 'dca', 'DCAR_006865' => 'dca', 'DCAR_008558' => 'dca', 'DCAR_028754' => 'dca', 'DCAR_028755' => 'dca', 'Dinv31218' => 'din', 'Dinv32371' => 'din', 'Dinv34250' => 'din', 'Dinv37156' => 'din', 'Dinv43704' => 'din', 'Duzib093G1811' => 'dzi', 'Duzib106G1622' => 'dzi', 'Duzib114G0504' => 'dzi', 'Duzib128G0338' => 'dzi', 'Duzib128G1577' => 'dzi', 'Duzib133G0104' => 'dzi', 'Duzib133G1080' => 'dzi', 'Duzib138G0324' => 'dzi', 'Duzib138G0394' => 'dzi', 'Duzib205G0122' => 'dzi', 'Duzib268G1020' => 'dzi', 'Duzib268G1359' => 'dzi', 'ECA232G3929' => 'eca', 'ECA236G2210' => 'eca', 'ECA236G2287' => 'eca', 'ECA240G4568' => 'eca', 'ECA247G0894' => 'eca', 'EL10Ac1g00200' => 'bvu', 'EL10Ac1g00886' => 'bvu', 'EL10As1g23091' => 'bvu', 'EL10As1g23092' => 'bvu', 'Eucgr.A01284' => 'egr', 'Eucgr.A01285' => 'egr', 'Eucgr.D02456' => 'egr', 'Eucgr.E00018' => 'egr', 'Eucgr.E01439' => 'egr', 'Eucgr.G02859' => 'egr', 'FAN01G0168' => 'fan', 'FAN01G0453' => 'fan', 'FAN01G2761' => 'fan', 'FAN02G1239' => 'fan', 'FAN03G0645' => 'fan', 'FAN03G2707' => 'fan', 'FAN03G2978' => 'fan', 'FAN04G0227' => 'fan', 'FAN06G0091' => 'fan', 'FAN06G1418' => 'fan', 'FAN06G1512' => 'fan', 'FAN06G1986' => 'fan', 'FAN06G2905' => 'fan', 'FAN06G4325' => 'fan', 'FAN08G0033' => 'fan', 'FAN09G0642' => 'fan', 'FAN10G1763' => 'fan', 'FAN10G2026' => 'fan', 'FAN10G2513' => 'fan', 'FAN10G3402' => 'fan', 'FAN10G3564' => 'fan', 'FAN10G3987' => 'fan', 'FAN13G1490' => 'fan', 'FAN14G5857' => 'fan', 'FAN18G1188' => 'fan', 'FvH4_5g00750' => 'fve', 'FvH4_6g13410' => 'fve', 'FvH4_7g11740' => 'fve', 'FvH4_7g17410' => 'fve', 'FvH4_7g18860' => 'fve', 'Glyma.01G099100' => 'gma', 'Glyma.01G142300' => 'gma', 'Glyma.03G025500' => 'gma', 'Glyma.03G069700' => 'gma', 'Glyma.03G260000' => 'gma', 'Glyma.09G269800' => 'gma', 'Glyma.10G208700' => 'gma', 'Glyma.18G220400' => 'gma', 'Glyma.20G182000' => 'gma', 'Gohir.A01G221726' => 'ghi', 'Gohir.A07G134600' => 'ghi', 'Gohir.A07G146000' => 'ghi', 'Gohir.A08G173900' => 'ghi', 'Gohir.A09G194900' => 'ghi', 'Gohir.A10G204100' => 'ghi', 'Gohir.A11G080600' => 'ghi', 'Gohir.A11G327500' => 'ghi', 'Gohir.A12G101800' => 'ghi', 'Gohir.D01G211200' => 'ghi', 'Gohir.D07G139200' => 'ghi', 'Gohir.D07G152100' => 'ghi', 'Gohir.D08G192600' => 'ghi', 'Gohir.D09G189200' => 'ghi', 'Gohir.D10G212000' => 'ghi', 'Gohir.D11G085200' => 'ghi', 'Gohir.D11G346400' => 'ghi', 'Gohir.D12G104800' => 'ghi', 'Gorai.001G151300' => 'gra', 'Gorai.001G174100' => 'gra', 'Gorai.002G257000' => 'gra', 'Gorai.004G202600' => 'gra', 'Gorai.007G090900' => 'gra', 'Gorai.007G376700' => 'gra', 'Gorai.008G114100' => 'gra', 'Gorai.011G237900' => 'gra', 'GSVIVG01005450001' => 'vvi', 'GSVIVG01016232001' => 'vvi', 'GSVIVG01026157001' => 'vvi', 'GSVIVG01027419001' => 'vvi', 'GSVIVG01027631001' => 'vvi', 'GSVIVG01034143001' => 'vvi', 'HanXRQChr03g0093921' => 'han', 'HanXRQChr04g0120001' => 'han', 'HanXRQChr04g0122561' => 'han', 'HanXRQChr09g0246851' => 'han', 'HanXRQChr10g0293311' => 'han', 'HanXRQChr13g0425231' => 'han', 'HanXRQChr16g0532571' => 'han', 'Haze_09050' => 'cav', 'Haze_15715' => 'cav', 'Haze_15716' => 'cav', 'Haze_16803' => 'cav', 'Haze_16850' => 'cav', 'Hma1.2p1_0301F.1_g118655' => 'hma', 'Hma1.2p1_0309F.1_g120590' => 'hma', 'Hma1.2p1_0936F.1_g238900' => 'hma', 'Hma1.2p1_3552F.1_g336740' => 'hma', 'HPP92_003520' => 'vpl', 'HPP92_006628' => 'vpl', 'HPP92_006645' => 'vpl', 'HPP92_014669' => 'vpl', 'HPP92_015077' => 'vpl', 'Hund16742' => 'sun', 'Hund17022' => 'sun', 'Lalb_Chr02g0152131' => 'lal', 'Lalb_Chr05g0225371' => 'lal', 'Lalb_Chr07g0189841' => 'lal', 'Lalb_Chr07g0192961' => 'lal', 'Lalb_Chr12g0208221' => 'lal', 'Lalb_Chr13g0291211' => 'lal', 'Lalb_Chr13g0291781' => 'lal', 'Lalb_Chr18g0044651' => 'lal', 'Lalb_Chr21g0313731' => 'lal', 'Lj1g0022533' => 'lja', 'Lj2A18T50' => 'lonja', 'Lj2A92G93' => 'lonja', 'Lj3A965T73' => 'lonja', 'Lj3g0000673' => 'lja', 'Lj3g0002666' => 'lja', 'Lj4g0016985' => 'lja', 'Lj5g0003625' => 'lja', 'Lj7A529G36' => 'lonja', 'Lj9A569T49' => 'lonja', 'Lj9A604T63' => 'lonja', 'Lsat_1_v5_gn_3_132060' => 'lsa', 'Lsat_1_v5_gn_4_68941' => 'lsa', 'Lsat_1_v5_gn_5_95580' => 'lsa', 'Lsat_1_v5_gn_7_161' => 'lsa', 'Lsat_1_v5_gn_7_7041' => 'lsa', 'Lsat_1_v5_gn_9_33481' => 'lsa', 'Lsat_1_v5_gn_9_68260' => 'lsa', 'Manes.01G073100' => 'mes', 'Manes.01G266300' => 'mes', 'Manes.02G033300' => 'mes', 'Manes.05G017900' => 'mes', 'Manes.05G046100' => 'mes', 'Manes.08G080900' => 'mes', 'Manes.10G049400' => 'mes', 'Mapoly0009s0186' => 'mpo', 'Mapoly0036s0118' => 'mpo', 'Mapoly0101s0046' => 'mpo', 'MBI04_g30218_MAGBIO' => 'mbi', 'MBI04_g35564_MAGBIO' => 'mbi', 'MBI12_g34011_MAGBIO' => 'mbi', 'MBI14_g04655_MAGBIO' => 'mbi', 'MCO07G653' => 'mco', 'MCO10G173' => 'mco', 'MD01G1087100' => 'mdo', 'MD01G1104200' => 'mdo', 'MD02G1205100' => 'mdo', 'MD04G1079200' => 'mdo', 'MD04G1131400' => 'mdo', 'MD07G1121600' => 'mdo', 'MD07G1157300' => 'mdo', 'MD07G1171000' => 'mdo', 'MD12G1144500' => 'mdo', 'Medtr1g094610' => 'mtr', 'Medtr4g021795' => 'mtr', 'Medtr4g023760' => 'mtr', 'Medtr7g118050' => 'mtr', 'MELO3C005582.2' => 'cme', 'MELO3C005989.2' => 'cme', 'MELO3C006192.2' => 'cme', 'MELO3C009248.2' => 'cme', 'MELO3C019817.2' => 'cme', 'Migut.B01625' => 'egut', 'Migut.B01915' => 'egut', 'Migut.F01721' => 'egut', 'Migut.J00314' => 'egut', 'MSTRG.20742' => 'ama', 'MSTRG.8134' => 'ama', 'Nitab4.5_0000096g0010' => 'nta', 'Nitab4.5_0000202g0030' => 'nta', 'Nitab4.5_0000216g0370' => 'nta', 'Nitab4.5_0000457g0230' => 'nta', 'Nitab4.5_0001702g0170' => 'nta', 'Nitab4.5_0003607g0010' => 'nta', 'Nitab4.5_0004917g0020' => 'nta', 'Nitab4.5_0007059g0010' => 'nta', 'Nitab4.5_0007184g0010' => 'nta', 'Nitab4.5_0007346g0020' => 'nta', 'Nn1g00410' => 'nnu', 'Nn1g01252' => 'nnu', 'Nn2g11168' => 'nnu', 'Nn2g13403' => 'nnu', 'Nn2g13760' => 'nnu', 'Nn4g26380' => 'nnu', 'Oeu000806.2' => 'oeu', 'Oeu005788.1' => 'oeu', 'Oeu006900.3' => 'oeu', 'Oeu007797.1' => 'oeu', 'Oeu011932.1' => 'oeu', 'Oeu022739.1' => 'oeu', 'Oeu037918.1' => 'oeu', 'Oeu055490.2' => 'oeu', 'Os01g0844400' => 'osa', 'Os02g0819100' => 'osa', 'Os03g0804300' => 'osa', 'Os05g0458000' => 'osa', 'Os07g0467800' => 'osa', 'Os12g0602200' => 'osa', 'Peaxi162Scf00013g03444' => 'pax', 'Peaxi162Scf00094g01120' => 'pax', 'Peaxi162Scf00191g01211' => 'pax', 'Peaxi162Scf00238g01110' => 'pax', 'Peaxi162Scf00330g00719' => 'pax', 'Peaxi162Scf00627g00018' => 'pax', 'PGR031G2686' => 'pgr', 'PGR042G0809' => 'pgr', 'PGR142G0193' => 'pgr', 'PGSC0003DMG400011066' => 'stu', 'PGSC0003DMG400012041' => 'stu', 'PGSC0003DMG400013678' => 'stu', 'PGSC0003DMG400023477' => 'stu', 'PGSC0003DMG400025956' => 'stu', 'PGSC0003DMG401019151' => 'stu', 'Phvul.006G116400' => 'pvu', 'Phvul.007G097300' => 'pvu', 'Phvul.010G015000' => 'pvu', 'Phvul.010G083900' => 'pvu', 'Potri.001G117100' => 'ptr', 'Potri.002G147300' => 'ptr', 'Potri.003G115600' => 'ptr', 'Potri.006G087400' => 'ptr', 'Potri.010G226100' => 'ptr', 'Potri.014G069200' => 'ptr', 'Potri.014G104000' => 'ptr', 'Potri.016G100200' => 'ptr', 'Pp3c10_20450' => 'ppa', 'Pp3c1_42400' => 'ppa', 'Pp3c3_24390' => 'ppa', 'Pp3c3_2860' => 'ppa', 'PRCOL_00003193' => 'pco', 'Prupe.2G144500' => 'ppe', 'Prupe.2G195700' => 'ppe', 'Prupe.2G209800' => 'ppe', 'Prupe.5G080000' => 'ppe', 'Prupe.6G257900' => 'ppe', 'Psat3g001160' => 'psa', 'Psat6g181880' => 'psa', 'Psat7g233720' => 'psa', 'PSO063G7587' => 'pso', 'PSO339G2145' => 'pso', 'PSO339G3369' => 'pso', 'PSO478G2747' => 'pso', 'PSO513G0140' => 'pso', 'PSO782G1614' => 'pso', 'PSO782G4889' => 'pso', 'PSO782G5485' => 'pso', 'PSO801G0241' => 'pso', 'QL07p048854' => 'qlo', 'QL08p046745' => 'qlo', 'QL08p052606' => 'qlo', 'QL08p053414' => 'qlo', 'QL08p054868' => 'qlo', 'RcHm_v2.0_Chr1g0350251' => 'rch', 'RcHm_v2.0_Chr1g0360851' => 'rch', 'RcHm_v2.0_Chr1g0362791' => 'rch', 'RcHm_v2.0_Chr3g0466281' => 'rch', 'RcHm_v2.0_Chr7g0201481' => 'rch', 'Rhsim01G0148600' => 'rsi', 'Rhsim05G0194400' => 'rsi', 'Rhsim07G0000700' => 'rsi', 'Rhsim07G0000800' => 'rsi', 'Rhsim07G0027900' => 'rsi', 'Rhsim09G0149500' => 'rsi', 'RhsimUnG0186900' => 'rsi', 'Sabra01G0089900' => 'sbr', 'Sabra02G0114700' => 'sbr', 'Sabra02G0116300' => 'sbr', 'Sabra03G0080100' => 'sbr', 'Sabra08G0024300' => 'sbr', 'Sabra10G0174300' => 'sbr', 'Sabra14G0048900' => 'sbr', 'Sabra14G0076500' => 'sbr', 'SalBow5G2513' => 'sbo', 'Sc01g0002300' => 'sci', 'Sc01g0004450' => 'sci', 'Sc06g0001680' => 'sci', 'Sc23g0003580' => 'sci', 'Sed0000913' => 'sed', 'Sed0001655' => 'sed', 'Sed0007745' => 'sed', 'Sed0010951' => 'sed', 'Sed0017599' => 'sed', 'Sed0021405' => 'sed', 'Sed0022810' => 'sed', 'SEGI_07099' => 'sgi', 'SEGI_11931' => 'sgi', 'SEGI_13187' => 'sgi', 'SEGI_29958' => 'sgi', 'SEGI_36351' => 'sgi', 'SGA_v2.0_scaffold126G33770' => 'sas', 'SGA_v2.0_scaffold153G37003' => 'sas', 'SGA_v2.0_scaffold2G01359' => 'sas', 'SGA_v2.0_scaffold5G03064' => 'sas', 'SGA_v2.0_scaffold95G28903' => 'sas', 'SHI12701' => 'shi', 'SHI26410' => 'shi', 'SHI38997' => 'shi', 'SHI53759' => 'shi', 'SHI53886' => 'shi', 'SHI54714' => 'shi', 'SMO011G0041' => 'smo', 'SMO146G0251' => 'smo', 'SMO160G0004' => 'smo', 'SMO174G0057' => 'smo', 'SMO244G0089' => 'smo', 'SMO296G0011' => 'smo', 'Solyc01g091280.3' => 'sly', 'Solyc05g047610.3' => 'sly', 'Solyc05g047640.3' => 'sly', 'Solyc05g055630.3' => 'sly', 'Solyc10g018160.2' => 'sly', 'Solyc10g084820.2' => 'sly', 'Solyc10g086565.2' => 'sly', 'Sopen01g037030' => 'spe', 'Sopen05g027920' => 'spe', 'Sopen05g034070' => 'spe', 'Sopen10g007260' => 'spe', 'Sopen10g034260' => 'spe', 'Sopen10g035950' => 'spe', 'Sp3g07710' => 'spa', 'Sp4g27420' => 'spa', 'Sp5g02450' => 'spa', 'Sp6g01280' => 'spa', 'Sp6g38480' => 'spa', 'Sp7g20780' => 'spa', 'TAR374G1413' => 'tar', 'TAR623G1777' => 'tar', 'TAR629G2370' => 'tar', 'TAR633G1759' => 'tar', 'TAR636G3387' => 'tar', 'THA.LOC104802447' => 'tha', 'THA.LOC104813916' => 'tha', 'THA.LOC104816423' => 'tha', 'THA.LOC104817246' => 'tha', 'THA.LOC104825895' => 'tha', 'Thecc.01G335200' => 'tca', 'Thecc.01G377400' => 'tca', 'Thecc.03G262200' => 'tca', 'Thecc.05G036800' => 'tca', 'Thecc.10G080500' => 'tca', 'Thecc.10G080800' => 'tca', 'Thhalv10001560m.g' => 'esa', 'Thhalv10006120m.g' => 'esa', 'Thhalv10014375m.g' => 'esa', 'Thhalv10021264m.g' => 'esa', 'Thhalv10028856m.g' => 'esa', 'TPR.G1914' => 'tpr', 'TPR.G4757' => 'tpr', 'TPR.G5595' => 'tpr', 'TWI14G0952' => 'twi', 'TWI14G1307' => 'twi', 'TWI38G2143' => 'twi', 'TWI59G0826' => 'twi', 'TWI77G0527' => 'twi', 'TWI81G0150' => 'twi', 'unitig_21.g21018' => 'ugi', 'unitig_26.g9725' => 'ugi', 'unitig_744.g24653' => 'ugi', 'unitig_749.g13778' => 'ugi', 'unitig_899.g15035' => 'ugi', 'vmacro04296' => 'vma', 'vmacro04852' => 'vma', 'vmacro13404' => 'vma', 'vmacro20169' => 'vma', 'vmacro21014' => 'vma', 'VMungo0331G0237' => 'vmu', 'VMungo0331G0706' => 'vmu', 'VMungo0331G1361' => 'vmu', 'VMungo0331G1489' => 'vmu', 'VMungo0540G1037' => 'vmu', 'VMungo0720G2487' => 'vmu', 'VMungo0720G2721' => 'vmu', 'Zm00001eb086860' => 'zma', 'Zm00001eb104760' => 'zma', 'Zm00001eb148220' => 'zma', 'Zm00001eb259030' => 'zma', 'Zm00001eb289590' => 'zma', 'Zm00001eb420150' => 'zma' ), 'gf_id' => 'HOM05D000968', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000968' ), 'data_identifier' => 'HOM05D000968', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000968', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p31690' => 'bna', 'A03p36040' => 'bna', 'A03p53730' => 'bna', 'A04p01410' => 'bna', 'A05p05420' => 'bna', 'A05p39630' => 'bna', 'A05p39640' => 'bna', 'A09p00970' => 'bna', 'A09p53060' => 'bna', 'A10p31890' => 'bna', 'Aa31LG10G15040' => 'aar', 'Aa31LG1G21090' => 'aar', 'Aa31LG1G26900' => 'aar', 'Aa31LG3G1820' => 'aar', 'Aa31LG5G1100' => 'aar', 'Aa31LG6G4740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2265' => 'aag', 'Actinidia07998' => 'ach', 'Actinidia11266' => 'ach', 'Actinidia12682' => 'ach', 'Actinidia26479' => 'ach', 'Actinidia31406' => 'ach', 'Actinidia32437' => 'ach', 'Actinidia38862' => 'ach', 'Ah.05g174230' => 'amhyb', 'Ah.05g179070' => 'amhyb', 'Ah.05g179090' => 'amhyb', 'Ah.12g059950' => 'amhyb', 'AL3G20480' => 'aly', 'AL4G44520' => 'aly', 'AL5G43110' => 'aly', 'AL6G13890' => 'aly', 'AL6G52620' => 'aly', 'AL7G30830' => 'aly', 'Aqoxy1G00899' => 'aox', 'Aqoxy5G04333' => 'aox', 'Aqoxy7G00641' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3IZ0NN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4EF6AW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W9P8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79GA3M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C43NQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFCU6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G95YVJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCHK29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LU1UG8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX91RN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGB4B1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8DA0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9H7JI' => 'arhy', 'AT3G09320' => 'ath', 'AT3G60800' => 'ath', 'AT4G00840' => 'ath', 'AT4G22750' => 'ath', 'AT5G04270' => 'ath', 'ATR0090G003' => 'atr', 'ATR0559G349' => 'atr', 'ATR0680G261' => 'atr', 'ATR0810G048' => 'atr', 'Atru.chr12.831' => 'acertr', 'Atru.chr5.303' => 'acertr', 'Atru.chr5.748' => 'acertr', 'Atru.chr8.1999' => 'acertr', 'Atru.chr9.1436' => 'acertr', 'AUR62004211' => 'cqu', 'AUR62004548' => 'cqu', 'AUR62013637' => 'cqu', 'AUR62022662' => 'cqu', 'AUR62025777' => 'cqu', 'AUR62042386' => 'cqu', 'BcaB01g02310' => 'bca', 'BcaB01g06062' => 'bca', 'BcaB02g08975' => 'bca', 'BcaB02g08980' => 'bca', 'BcaC01g04228' => 'bca', 'BcaC01g06830' => 'bca', 'BcaC02g10186' => 'bca', 'BcaC02g12214' => 'bca', 'BcaC04g24101' => 'bca', 'BcaC05g29520' => 'bca', 'BcaC05g29661' => 'bca', 'BcaC06g32130' => 'bca', 'BcaC06g32131' => 'bca', 'BcaC07g40601' => 'bca', 'BcaC07g42641' => 'bca', 'BcaNung01038' => 'bca', 'BcaNung01676' => 'bca', 'BcaNung02480' => 'bca', 'BcaNung07376' => 'bca', 'BolC3t16146H' => 'bol', 'BolC3t16637H' => 'bol', 'BolC4t22257H' => 'bol', 'BolC4t24728H' => 'bol', 'BolC5t34517H' => 'bol', 'BolC7t45703H' => 'bol', 'BolC8t51166H' => 'bol', 'BolC9t53038H' => 'bol', 'BolC9t60000H' => 'bol', 'BraA01t01345Z' => 'bra', 'BraA01t01346Z' => 'bra', 'BraA01t01348Z' => 'bra', 'BraA03t12347Z' => 'bra', 'BraA03t12775Z' => 'bra', 'BraA03t14439Z' => 'bra', 'BraA04t15860Z' => 'bra', 'BraA05t19511Z' => 'bra', 'BraA05t22746Z' => 'bra', 'BraA09t35767Z' => 'bra', 'BraA09t40732Z' => 'bra', 'BraA10t45233Z' => 'bra', 'C03p38720' => 'bna', 'C03p43680' => 'bna', 'C04p06350' => 'bna', 'C04p31800' => 'bna', 'C05p58680' => 'bna', 'C07p52110' => 'bna', 'C08p35760' => 'bna', 'C09p01050' => 'bna', 'C09p72600' => 'bna', 'CAN.G106.2' => 'can', 'CAN.G1482.1' => 'can', 'CAN.G324.12' => 'can', 'CAN.G388.20' => 'can', 'CAN.G412.7' => 'can', 'CAN.G694.32' => 'can', 'CAN.G92.12' => 'can', 'CANSAT11G2353' => 'cansat', 'CANSAT21G1398' => 'cansat', 'CANSAT56G2456' => 'cansat', 'CANSAT56G3031' => 'cansat', 'CANSAT56G4539' => 'cansat', 'CARHR083680' => 'chi', 'CARHR171190' => 'chi', 'CARHR209010' => 'chi', 'CARHR229680' => 'chi', 'CARHR249490' => 'chi', 'Carub.0003s0844' => 'cru', 'Carub.0005s2755' => 'cru', 'Carub.0006s0322' => 'cru', 'Carub.0006s3586' => 'cru', 'Carub.0007s1855' => 'cru', 'Ca_07808_v3' => 'car', 'Ca_09535_v3' => 'car', 'Ca_10548_v3' => 'car', 'Ca_19913_v3' => 'car', 'Ca_19916_v3' => 'car', 'Ca_19975_v3' => 'car', 'CBR_g22876' => 'cbr', 'CBR_g22879' => 'cbr', 'CBR_g38491' => 'cbr', 'CBR_g54185' => 'cbr', 'CBR_g54190' => 'cbr', 'Cc02_g11020' => 'ccan', 'Cc02_g23920' => 'ccan', 'Cc02_g39860' => 'ccan', 'Cc02_g39870' => 'ccan', 'Cc03_g06760' => 'ccan', 'Cc06_g02450' => 'ccan', 'Cc09_g09450' => 'ccan', 'CDE02G1959' => 'cde', 'CDE04G0600' => 'cde', 'CDE07G1996' => 'cde', 'CDE07G2078' => 'cde', 'CDE11G0611' => 'cde', 'Cfa001683' => 'cfa', 'Cfa001734' => 'cfa', 'Cfa001737' => 'cfa', 'Cfa003751' => 'cfa', 'Cfa012019' => 'cfa', 'Cfa017353' => 'cfa', 'Cfa017732' => 'cfa', 'Cfa022464' => 'cfa', 'Ciclev10012400m.g' => 'ccl', 'Ciclev10021242m.g' => 'ccl', 'Ciclev10021302m.g' => 'ccl', 'Ciclev10021463m.g' => 'ccl', 'Ciclev10032359m.g' => 'ccl', 'CiPaw.01G081000' => 'cil', 'CiPaw.01G262500' => 'cil', 'CiPaw.01G269800' => 'cil', 'CiPaw.02G168400' => 'cil', 'CiPaw.05G119500' => 'cil', 'CiPaw.11G147300' => 'cil', 'ClCG01G003630' => 'cla', 'ClCG05G000510' => 'cla', 'ClCG05G002300' => 'cla', 'ClCG08G007650' => 'cla', 'ClCG10G021250' => 'cla', 'COL.COLO4_06218' => 'col', 'COL.COLO4_12538' => 'col', 'COL.COLO4_14775' => 'col', 'COL.COLO4_23875' => 'col', 'Cpa.g.sc141.16' => 'cpa', 'Cpa.g.sc169.16' => 'cpa', 'Cpa.g.sc244.4' => 'cpa', 'Cpa.g.sc244.5' => 'cpa', 'Cpa.g.sc29.87' => 'cpa', 'Cpa.g.sc53.115' => 'cpa', 'Cre03.g207502' => 'cre', 'Cre06.g277000' => 'cre', 'Cre09.g394050' => 'cre', 'CsaV3_3G007680' => 'csa', 'CsaV3_3G009710' => 'csa', 'CsaV3_3G034790' => 'csa', 'CsaV3_5G003750' => 'csa', 'CsaV3_6G036620' => 'csa', 'CSS0002288' => 'camsi', 'CSS0011250' => 'camsi', 'CSS0021619' => 'camsi', 'CSS0046701' => 'camsi', 'DCAR_006420' => 'dca', 'DCAR_006865' => 'dca', 'DCAR_008558' => 'dca', 'DCAR_028754' => 'dca', 'DCAR_028755' => 'dca', 'Dinv31218' => 'din', 'Dinv32371' => 'din', 'Dinv34250' => 'din', 'Dinv37156' => 'din', 'Dinv43704' => 'din', 'Duzib093G1811' => 'dzi', 'Duzib106G1622' => 'dzi', 'Duzib114G0504' => 'dzi', 'Duzib128G0338' => 'dzi', 'Duzib128G1577' => 'dzi', 'Duzib133G0104' => 'dzi', 'Duzib133G1080' => 'dzi', 'Duzib138G0324' => 'dzi', 'Duzib138G0394' => 'dzi', 'Duzib205G0122' => 'dzi', 'Duzib268G1020' => 'dzi', 'Duzib268G1359' => 'dzi', 'ECA232G3929' => 'eca', 'ECA236G2210' => 'eca', 'ECA236G2287' => 'eca', 'ECA240G4568' => 'eca', 'ECA247G0894' => 'eca', 'EL10Ac1g00200' => 'bvu', 'EL10Ac1g00886' => 'bvu', 'EL10As1g23091' => 'bvu', 'EL10As1g23092' => 'bvu', 'Eucgr.A01284' => 'egr', 'Eucgr.A01285' => 'egr', 'Eucgr.D02456' => 'egr', 'Eucgr.E00018' => 'egr', 'Eucgr.E01439' => 'egr', 'Eucgr.G02859' => 'egr', 'FAN01G0168' => 'fan', 'FAN01G0453' => 'fan', 'FAN01G2761' => 'fan', 'FAN02G1239' => 'fan', 'FAN03G0645' => 'fan', 'FAN03G2707' => 'fan', 'FAN03G2978' => 'fan', 'FAN04G0227' => 'fan', 'FAN06G0091' => 'fan', 'FAN06G1418' => 'fan', 'FAN06G1512' => 'fan', 'FAN06G1986' => 'fan', 'FAN06G2905' => 'fan', 'FAN06G4325' => 'fan', 'FAN08G0033' => 'fan', 'FAN09G0642' => 'fan', 'FAN10G1763' => 'fan', 'FAN10G2026' => 'fan', 'FAN10G2513' => 'fan', 'FAN10G3402' => 'fan', 'FAN10G3564' => 'fan', 'FAN10G3987' => 'fan', 'FAN13G1490' => 'fan', 'FAN14G5857' => 'fan', 'FAN18G1188' => 'fan', 'FvH4_5g00750' => 'fve', 'FvH4_6g13410' => 'fve', 'FvH4_7g11740' => 'fve', 'FvH4_7g17410' => 'fve', 'FvH4_7g18860' => 'fve', 'Glyma.01G099100' => 'gma', 'Glyma.01G142300' => 'gma', 'Glyma.03G025500' => 'gma', 'Glyma.03G069700' => 'gma', 'Glyma.03G260000' => 'gma', 'Glyma.09G269800' => 'gma', 'Glyma.10G208700' => 'gma', 'Glyma.18G220400' => 'gma', 'Glyma.20G182000' => 'gma', 'Gohir.A01G221726' => 'ghi', 'Gohir.A07G134600' => 'ghi', 'Gohir.A07G146000' => 'ghi', 'Gohir.A08G173900' => 'ghi', 'Gohir.A09G194900' => 'ghi', 'Gohir.A10G204100' => 'ghi', 'Gohir.A11G080600' => 'ghi', 'Gohir.A11G327500' => 'ghi', 'Gohir.A12G101800' => 'ghi', 'Gohir.D01G211200' => 'ghi', 'Gohir.D07G139200' => 'ghi', 'Gohir.D07G152100' => 'ghi', 'Gohir.D08G192600' => 'ghi', 'Gohir.D09G189200' => 'ghi', 'Gohir.D10G212000' => 'ghi', 'Gohir.D11G085200' => 'ghi', 'Gohir.D11G346400' => 'ghi', 'Gohir.D12G104800' => 'ghi', 'Gorai.001G151300' => 'gra', 'Gorai.001G174100' => 'gra', 'Gorai.002G257000' => 'gra', 'Gorai.004G202600' => 'gra', 'Gorai.007G090900' => 'gra', 'Gorai.007G376700' => 'gra', 'Gorai.008G114100' => 'gra', 'Gorai.011G237900' => 'gra', 'GSVIVG01005450001' => 'vvi', 'GSVIVG01016232001' => 'vvi', 'GSVIVG01026157001' => 'vvi', 'GSVIVG01027419001' => 'vvi', 'GSVIVG01027631001' => 'vvi', 'GSVIVG01034143001' => 'vvi', 'HanXRQChr03g0093921' => 'han', 'HanXRQChr04g0120001' => 'han', 'HanXRQChr04g0122561' => 'han', 'HanXRQChr09g0246851' => 'han', 'HanXRQChr10g0293311' => 'han', 'HanXRQChr13g0425231' => 'han', 'HanXRQChr16g0532571' => 'han', 'Haze_09050' => 'cav', 'Haze_15715' => 'cav', 'Haze_15716' => 'cav', 'Haze_16803' => 'cav', 'Haze_16850' => 'cav', 'Hma1.2p1_0301F.1_g118655' => 'hma', 'Hma1.2p1_0309F.1_g120590' => 'hma', 'Hma1.2p1_0936F.1_g238900' => 'hma', 'Hma1.2p1_3552F.1_g336740' => 'hma', 'HPP92_003520' => 'vpl', 'HPP92_006628' => 'vpl', 'HPP92_006645' => 'vpl', 'HPP92_014669' => 'vpl', 'HPP92_015077' => 'vpl', 'Hund16742' => 'sun', 'Hund17022' => 'sun', 'Lalb_Chr02g0152131' => 'lal', 'Lalb_Chr05g0225371' => 'lal', 'Lalb_Chr07g0189841' => 'lal', 'Lalb_Chr07g0192961' => 'lal', 'Lalb_Chr12g0208221' => 'lal', 'Lalb_Chr13g0291211' => 'lal', 'Lalb_Chr13g0291781' => 'lal', 'Lalb_Chr18g0044651' => 'lal', 'Lalb_Chr21g0313731' => 'lal', 'Lj1g0022533' => 'lja', 'Lj2A18T50' => 'lonja', 'Lj2A92G93' => 'lonja', 'Lj3A965T73' => 'lonja', 'Lj3g0000673' => 'lja', 'Lj3g0002666' => 'lja', 'Lj4g0016985' => 'lja', 'Lj5g0003625' => 'lja', 'Lj7A529G36' => 'lonja', 'Lj9A569T49' => 'lonja', 'Lj9A604T63' => 'lonja', 'Lsat_1_v5_gn_3_132060' => 'lsa', 'Lsat_1_v5_gn_4_68941' => 'lsa', 'Lsat_1_v5_gn_5_95580' => 'lsa', 'Lsat_1_v5_gn_7_161' => 'lsa', 'Lsat_1_v5_gn_7_7041' => 'lsa', 'Lsat_1_v5_gn_9_33481' => 'lsa', 'Lsat_1_v5_gn_9_68260' => 'lsa', 'Manes.01G073100' => 'mes', 'Manes.01G266300' => 'mes', 'Manes.02G033300' => 'mes', 'Manes.05G017900' => 'mes', 'Manes.05G046100' => 'mes', 'Manes.08G080900' => 'mes', 'Manes.10G049400' => 'mes', 'Mapoly0009s0186' => 'mpo', 'Mapoly0036s0118' => 'mpo', 'Mapoly0101s0046' => 'mpo', 'MBI04_g30218_MAGBIO' => 'mbi', 'MBI04_g35564_MAGBIO' => 'mbi', 'MBI12_g34011_MAGBIO' => 'mbi', 'MBI14_g04655_MAGBIO' => 'mbi', 'MCO07G653' => 'mco', 'MCO10G173' => 'mco', 'MD01G1087100' => 'mdo', 'MD01G1104200' => 'mdo', 'MD02G1205100' => 'mdo', 'MD04G1079200' => 'mdo', 'MD04G1131400' => 'mdo', 'MD07G1121600' => 'mdo', 'MD07G1157300' => 'mdo', 'MD07G1171000' => 'mdo', 'MD12G1144500' => 'mdo', 'Medtr1g094610' => 'mtr', 'Medtr4g021795' => 'mtr', 'Medtr4g023760' => 'mtr', 'Medtr7g118050' => 'mtr', 'MELO3C005582.2' => 'cme', 'MELO3C005989.2' => 'cme', 'MELO3C006192.2' => 'cme', 'MELO3C009248.2' => 'cme', 'MELO3C019817.2' => 'cme', 'Migut.B01625' => 'egut', 'Migut.B01915' => 'egut', 'Migut.F01721' => 'egut', 'Migut.J00314' => 'egut', 'MSTRG.20742' => 'ama', 'MSTRG.8134' => 'ama', 'Nitab4.5_0000096g0010' => 'nta', 'Nitab4.5_0000202g0030' => 'nta', 'Nitab4.5_0000216g0370' => 'nta', 'Nitab4.5_0000457g0230' => 'nta', 'Nitab4.5_0001702g0170' => 'nta', 'Nitab4.5_0003607g0010' => 'nta', 'Nitab4.5_0004917g0020' => 'nta', 'Nitab4.5_0007059g0010' => 'nta', 'Nitab4.5_0007184g0010' => 'nta', 'Nitab4.5_0007346g0020' => 'nta', 'Nn1g00410' => 'nnu', 'Nn1g01252' => 'nnu', 'Nn2g11168' => 'nnu', 'Nn2g13403' => 'nnu', 'Nn2g13760' => 'nnu', 'Nn4g26380' => 'nnu', 'Oeu000806.2' => 'oeu', 'Oeu005788.1' => 'oeu', 'Oeu006900.3' => 'oeu', 'Oeu007797.1' => 'oeu', 'Oeu011932.1' => 'oeu', 'Oeu022739.1' => 'oeu', 'Oeu037918.1' => 'oeu', 'Oeu055490.2' => 'oeu', 'Os01g0844400' => 'osa', 'Os02g0819100' => 'osa', 'Os03g0804300' => 'osa', 'Os05g0458000' => 'osa', 'Os07g0467800' => 'osa', 'Os12g0602200' => 'osa', 'Peaxi162Scf00013g03444' => 'pax', 'Peaxi162Scf00094g01120' => 'pax', 'Peaxi162Scf00191g01211' => 'pax', 'Peaxi162Scf00238g01110' => 'pax', 'Peaxi162Scf00330g00719' => 'pax', 'Peaxi162Scf00627g00018' => 'pax', 'PGR031G2686' => 'pgr', 'PGR042G0809' => 'pgr', 'PGR142G0193' => 'pgr', 'PGSC0003DMG400011066' => 'stu', 'PGSC0003DMG400012041' => 'stu', 'PGSC0003DMG400013678' => 'stu', 'PGSC0003DMG400023477' => 'stu', 'PGSC0003DMG400025956' => 'stu', 'PGSC0003DMG401019151' => 'stu', 'Phvul.006G116400' => 'pvu', 'Phvul.007G097300' => 'pvu', 'Phvul.010G015000' => 'pvu', 'Phvul.010G083900' => 'pvu', 'Potri.001G117100' => 'ptr', 'Potri.002G147300' => 'ptr', 'Potri.003G115600' => 'ptr', 'Potri.006G087400' => 'ptr', 'Potri.010G226100' => 'ptr', 'Potri.014G069200' => 'ptr', 'Potri.014G104000' => 'ptr', 'Potri.016G100200' => 'ptr', 'Pp3c10_20450' => 'ppa', 'Pp3c1_42400' => 'ppa', 'Pp3c3_24390' => 'ppa', 'Pp3c3_2860' => 'ppa', 'PRCOL_00003193' => 'pco', 'Prupe.2G144500' => 'ppe', 'Prupe.2G195700' => 'ppe', 'Prupe.2G209800' => 'ppe', 'Prupe.5G080000' => 'ppe', 'Prupe.6G257900' => 'ppe', 'Psat3g001160' => 'psa', 'Psat6g181880' => 'psa', 'Psat7g233720' => 'psa', 'PSO063G7587' => 'pso', 'PSO339G2145' => 'pso', 'PSO339G3369' => 'pso', 'PSO478G2747' => 'pso', 'PSO513G0140' => 'pso', 'PSO782G1614' => 'pso', 'PSO782G4889' => 'pso', 'PSO782G5485' => 'pso', 'PSO801G0241' => 'pso', 'QL07p048854' => 'qlo', 'QL08p046745' => 'qlo', 'QL08p052606' => 'qlo', 'QL08p053414' => 'qlo', 'QL08p054868' => 'qlo', 'RcHm_v2.0_Chr1g0350251' => 'rch', 'RcHm_v2.0_Chr1g0360851' => 'rch', 'RcHm_v2.0_Chr1g0362791' => 'rch', 'RcHm_v2.0_Chr3g0466281' => 'rch', 'RcHm_v2.0_Chr7g0201481' => 'rch', 'Rhsim01G0148600' => 'rsi', 'Rhsim05G0194400' => 'rsi', 'Rhsim07G0000700' => 'rsi', 'Rhsim07G0000800' => 'rsi', 'Rhsim07G0027900' => 'rsi', 'Rhsim09G0149500' => 'rsi', 'RhsimUnG0186900' => 'rsi', 'Sabra01G0089900' => 'sbr', 'Sabra02G0114700' => 'sbr', 'Sabra02G0116300' => 'sbr', 'Sabra03G0080100' => 'sbr', 'Sabra08G0024300' => 'sbr', 'Sabra10G0174300' => 'sbr', 'Sabra14G0048900' => 'sbr', 'Sabra14G0076500' => 'sbr', 'SalBow5G2513' => 'sbo', 'Sc01g0002300' => 'sci', 'Sc01g0004450' => 'sci', 'Sc06g0001680' => 'sci', 'Sc23g0003580' => 'sci', 'Sed0000913' => 'sed', 'Sed0001655' => 'sed', 'Sed0007745' => 'sed', 'Sed0010951' => 'sed', 'Sed0017599' => 'sed', 'Sed0021405' => 'sed', 'Sed0022810' => 'sed', 'SEGI_07099' => 'sgi', 'SEGI_11931' => 'sgi', 'SEGI_13187' => 'sgi', 'SEGI_29958' => 'sgi', 'SEGI_36351' => 'sgi', 'SGA_v2.0_scaffold126G33770' => 'sas', 'SGA_v2.0_scaffold153G37003' => 'sas', 'SGA_v2.0_scaffold2G01359' => 'sas', 'SGA_v2.0_scaffold5G03064' => 'sas', 'SGA_v2.0_scaffold95G28903' => 'sas', 'SHI12701' => 'shi', 'SHI26410' => 'shi', 'SHI38997' => 'shi', 'SHI53759' => 'shi', 'SHI53886' => 'shi', 'SHI54714' => 'shi', 'SMO011G0041' => 'smo', 'SMO146G0251' => 'smo', 'SMO160G0004' => 'smo', 'SMO174G0057' => 'smo', 'SMO244G0089' => 'smo', 'SMO296G0011' => 'smo', 'Solyc01g091280.3' => 'sly', 'Solyc05g047610.3' => 'sly', 'Solyc05g047640.3' => 'sly', 'Solyc05g055630.3' => 'sly', 'Solyc10g018160.2' => 'sly', 'Solyc10g084820.2' => 'sly', 'Solyc10g086565.2' => 'sly', 'Sopen01g037030' => 'spe', 'Sopen05g027920' => 'spe', 'Sopen05g034070' => 'spe', 'Sopen10g007260' => 'spe', 'Sopen10g034260' => 'spe', 'Sopen10g035950' => 'spe', 'Sp3g07710' => 'spa', 'Sp4g27420' => 'spa', 'Sp5g02450' => 'spa', 'Sp6g01280' => 'spa', 'Sp6g38480' => 'spa', 'Sp7g20780' => 'spa', 'TAR374G1413' => 'tar', 'TAR623G1777' => 'tar', 'TAR629G2370' => 'tar', 'TAR633G1759' => 'tar', 'TAR636G3387' => 'tar', 'THA.LOC104802447' => 'tha', 'THA.LOC104813916' => 'tha', 'THA.LOC104816423' => 'tha', 'THA.LOC104817246' => 'tha', 'THA.LOC104825895' => 'tha', 'Thecc.01G335200' => 'tca', 'Thecc.01G377400' => 'tca', 'Thecc.03G262200' => 'tca', 'Thecc.05G036800' => 'tca', 'Thecc.10G080500' => 'tca', 'Thecc.10G080800' => 'tca', 'Thhalv10001560m.g' => 'esa', 'Thhalv10006120m.g' => 'esa', 'Thhalv10014375m.g' => 'esa', 'Thhalv10021264m.g' => 'esa', 'Thhalv10028856m.g' => 'esa', 'TPR.G1914' => 'tpr', 'TPR.G4757' => 'tpr', 'TPR.G5595' => 'tpr', 'TWI14G0952' => 'twi', 'TWI14G1307' => 'twi', 'TWI38G2143' => 'twi', 'TWI59G0826' => 'twi', 'TWI77G0527' => 'twi', 'TWI81G0150' => 'twi', 'unitig_21.g21018' => 'ugi', 'unitig_26.g9725' => 'ugi', 'unitig_744.g24653' => 'ugi', 'unitig_749.g13778' => 'ugi', 'unitig_899.g15035' => 'ugi', 'vmacro04296' => 'vma', 'vmacro04852' => 'vma', 'vmacro13404' => 'vma', 'vmacro20169' => 'vma', 'vmacro21014' => 'vma', 'VMungo0331G0237' => 'vmu', 'VMungo0331G0706' => 'vmu', 'VMungo0331G1361' => 'vmu', 'VMungo0331G1489' => 'vmu', 'VMungo0540G1037' => 'vmu', 'VMungo0720G2487' => 'vmu', 'VMungo0720G2721' => 'vmu', 'Zm00001eb086860' => 'zma', 'Zm00001eb104760' => 'zma', 'Zm00001eb148220' => 'zma', 'Zm00001eb259030' => 'zma', 'Zm00001eb289590' => 'zma', 'Zm00001eb420150' => 'zma' ) $gf_id = 'HOM05D000968' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000968' ) $data_identifier = 'HOM05D000968' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 19, 'bol' => (int) 9, 'bra' => (int) 12, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 5, 'ccan' => (int) 7, 'cde' => (int) 5, 'cfa' => (int) 8, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 4, 'dca' => (int) 5, 'din' => (int) 5, 'dzi' => (int) 12, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 25, 'fve' => (int) 5, 'gma' => (int) 9, 'ghi' => (int) 18, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 7, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 5, 'sun' => (int) 2, 'lal' => (int) 9, 'lja' => (int) 5, 'lonja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 9, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 2, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 3, 'stu' => (int) 6, 'pvu' => (int) 4, 'ptr' => (int) 8, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 3, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 1, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 5, 'sas' => (int) 5, 'shi' => (int) 6, 'smo' => (int) 6, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 3, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420150' $species_info = array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ) $local_species = 'col' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000968', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p31690' => 'bna', 'A03p36040' => 'bna', 'A03p53730' => 'bna', 'A04p01410' => 'bna', 'A05p05420' => 'bna', 'A05p39630' => 'bna', 'A05p39640' => 'bna', 'A09p00970' => 'bna', 'A09p53060' => 'bna', 'A10p31890' => 'bna', 'Aa31LG10G15040' => 'aar', 'Aa31LG1G21090' => 'aar', 'Aa31LG1G26900' => 'aar', 'Aa31LG3G1820' => 'aar', 'Aa31LG5G1100' => 'aar', 'Aa31LG6G4740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2265' => 'aag', 'Actinidia07998' => 'ach', 'Actinidia11266' => 'ach', 'Actinidia12682' => 'ach', 'Actinidia26479' => 'ach', 'Actinidia31406' => 'ach', 'Actinidia32437' => 'ach', 'Actinidia38862' => 'ach', 'Ah.05g174230' => 'amhyb', 'Ah.05g179070' => 'amhyb', 'Ah.05g179090' => 'amhyb', 'Ah.12g059950' => 'amhyb', 'AL3G20480' => 'aly', 'AL4G44520' => 'aly', 'AL5G43110' => 'aly', 'AL6G13890' => 'aly', 'AL6G52620' => 'aly', 'AL7G30830' => 'aly', 'Aqoxy1G00899' => 'aox', 'Aqoxy5G04333' => 'aox', 'Aqoxy7G00641' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3IZ0NN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4EF6AW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W9P8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79GA3M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C43NQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFCU6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G95YVJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCHK29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LU1UG8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX91RN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGB4B1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8DA0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9H7JI' => 'arhy', 'AT3G09320' => 'ath', 'AT3G60800' => 'ath', 'AT4G00840' => 'ath', 'AT4G22750' => 'ath', 'AT5G04270' => 'ath', 'ATR0090G003' => 'atr', 'ATR0559G349' => 'atr', 'ATR0680G261' => 'atr', 'ATR0810G048' => 'atr', 'Atru.chr12.831' => 'acertr', 'Atru.chr5.303' => 'acertr', 'Atru.chr5.748' => 'acertr', 'Atru.chr8.1999' => 'acertr', 'Atru.chr9.1436' => 'acertr', 'AUR62004211' => 'cqu', 'AUR62004548' => 'cqu', 'AUR62013637' => 'cqu', 'AUR62022662' => 'cqu', 'AUR62025777' => 'cqu', 'AUR62042386' => 'cqu', 'BcaB01g02310' => 'bca', 'BcaB01g06062' => 'bca', 'BcaB02g08975' => 'bca', 'BcaB02g08980' => 'bca', 'BcaC01g04228' => 'bca', 'BcaC01g06830' => 'bca', 'BcaC02g10186' => 'bca', 'BcaC02g12214' => 'bca', 'BcaC04g24101' => 'bca', 'BcaC05g29520' => 'bca', 'BcaC05g29661' => 'bca', 'BcaC06g32130' => 'bca', 'BcaC06g32131' => 'bca', 'BcaC07g40601' => 'bca', 'BcaC07g42641' => 'bca', 'BcaNung01038' => 'bca', 'BcaNung01676' => 'bca', 'BcaNung02480' => 'bca', 'BcaNung07376' => 'bca', 'BolC3t16146H' => 'bol', 'BolC3t16637H' => 'bol', 'BolC4t22257H' => 'bol', 'BolC4t24728H' => 'bol', 'BolC5t34517H' => 'bol', 'BolC7t45703H' => 'bol', 'BolC8t51166H' => 'bol', 'BolC9t53038H' => 'bol', 'BolC9t60000H' => 'bol', 'BraA01t01345Z' => 'bra', 'BraA01t01346Z' => 'bra', 'BraA01t01348Z' => 'bra', 'BraA03t12347Z' => 'bra', 'BraA03t12775Z' => 'bra', 'BraA03t14439Z' => 'bra', 'BraA04t15860Z' => 'bra', 'BraA05t19511Z' => 'bra', 'BraA05t22746Z' => 'bra', 'BraA09t35767Z' => 'bra', 'BraA09t40732Z' => 'bra', 'BraA10t45233Z' => 'bra', 'C03p38720' => 'bna', 'C03p43680' => 'bna', 'C04p06350' => 'bna', 'C04p31800' => 'bna', 'C05p58680' => 'bna', 'C07p52110' => 'bna', 'C08p35760' => 'bna', 'C09p01050' => 'bna', 'C09p72600' => 'bna', 'CAN.G106.2' => 'can', 'CAN.G1482.1' => 'can', 'CAN.G324.12' => 'can', 'CAN.G388.20' => 'can', 'CAN.G412.7' => 'can', 'CAN.G694.32' => 'can', 'CAN.G92.12' => 'can', 'CANSAT11G2353' => 'cansat', 'CANSAT21G1398' => 'cansat', 'CANSAT56G2456' => 'cansat', 'CANSAT56G3031' => 'cansat', 'CANSAT56G4539' => 'cansat', 'CARHR083680' => 'chi', 'CARHR171190' => 'chi', 'CARHR209010' => 'chi', 'CARHR229680' => 'chi', 'CARHR249490' => 'chi', 'Carub.0003s0844' => 'cru', 'Carub.0005s2755' => 'cru', 'Carub.0006s0322' => 'cru', 'Carub.0006s3586' => 'cru', 'Carub.0007s1855' => 'cru', 'Ca_07808_v3' => 'car', 'Ca_09535_v3' => 'car', 'Ca_10548_v3' => 'car', 'Ca_19913_v3' => 'car', 'Ca_19916_v3' => 'car', 'Ca_19975_v3' => 'car', 'CBR_g22876' => 'cbr', 'CBR_g22879' => 'cbr', 'CBR_g38491' => 'cbr', 'CBR_g54185' => 'cbr', 'CBR_g54190' => 'cbr', 'Cc02_g11020' => 'ccan', 'Cc02_g23920' => 'ccan', 'Cc02_g39860' => 'ccan', 'Cc02_g39870' => 'ccan', 'Cc03_g06760' => 'ccan', 'Cc06_g02450' => 'ccan', 'Cc09_g09450' => 'ccan', 'CDE02G1959' => 'cde', 'CDE04G0600' => 'cde', 'CDE07G1996' => 'cde', 'CDE07G2078' => 'cde', 'CDE11G0611' => 'cde', 'Cfa001683' => 'cfa', 'Cfa001734' => 'cfa', 'Cfa001737' => 'cfa', 'Cfa003751' => 'cfa', 'Cfa012019' => 'cfa', 'Cfa017353' => 'cfa', 'Cfa017732' => 'cfa', 'Cfa022464' => 'cfa', 'Ciclev10012400m.g' => 'ccl', 'Ciclev10021242m.g' => 'ccl', 'Ciclev10021302m.g' => 'ccl', 'Ciclev10021463m.g' => 'ccl', 'Ciclev10032359m.g' => 'ccl', 'CiPaw.01G081000' => 'cil', 'CiPaw.01G262500' => 'cil', 'CiPaw.01G269800' => 'cil', 'CiPaw.02G168400' => 'cil', 'CiPaw.05G119500' => 'cil', 'CiPaw.11G147300' => 'cil', 'ClCG01G003630' => 'cla', 'ClCG05G000510' => 'cla', 'ClCG05G002300' => 'cla', 'ClCG08G007650' => 'cla', 'ClCG10G021250' => 'cla', 'COL.COLO4_06218' => 'col', 'COL.COLO4_12538' => 'col', 'COL.COLO4_14775' => 'col', 'COL.COLO4_23875' => 'col', 'Cpa.g.sc141.16' => 'cpa', 'Cpa.g.sc169.16' => 'cpa', 'Cpa.g.sc244.4' => 'cpa', 'Cpa.g.sc244.5' => 'cpa', 'Cpa.g.sc29.87' => 'cpa', 'Cpa.g.sc53.115' => 'cpa', 'Cre03.g207502' => 'cre', 'Cre06.g277000' => 'cre', 'Cre09.g394050' => 'cre', 'CsaV3_3G007680' => 'csa', 'CsaV3_3G009710' => 'csa', 'CsaV3_3G034790' => 'csa', 'CsaV3_5G003750' => 'csa', 'CsaV3_6G036620' => 'csa', 'CSS0002288' => 'camsi', 'CSS0011250' => 'camsi', 'CSS0021619' => 'camsi', 'CSS0046701' => 'camsi', 'DCAR_006420' => 'dca', 'DCAR_006865' => 'dca', 'DCAR_008558' => 'dca', 'DCAR_028754' => 'dca', 'DCAR_028755' => 'dca', 'Dinv31218' => 'din', 'Dinv32371' => 'din', 'Dinv34250' => 'din', 'Dinv37156' => 'din', 'Dinv43704' => 'din', 'Duzib093G1811' => 'dzi', 'Duzib106G1622' => 'dzi', 'Duzib114G0504' => 'dzi', 'Duzib128G0338' => 'dzi', 'Duzib128G1577' => 'dzi', 'Duzib133G0104' => 'dzi', 'Duzib133G1080' => 'dzi', 'Duzib138G0324' => 'dzi', 'Duzib138G0394' => 'dzi', 'Duzib205G0122' => 'dzi', 'Duzib268G1020' => 'dzi', 'Duzib268G1359' => 'dzi', 'ECA232G3929' => 'eca', 'ECA236G2210' => 'eca', 'ECA236G2287' => 'eca', 'ECA240G4568' => 'eca', 'ECA247G0894' => 'eca', 'EL10Ac1g00200' => 'bvu', 'EL10Ac1g00886' => 'bvu', 'EL10As1g23091' => 'bvu', 'EL10As1g23092' => 'bvu', 'Eucgr.A01284' => 'egr', 'Eucgr.A01285' => 'egr', 'Eucgr.D02456' => 'egr', 'Eucgr.E00018' => 'egr', 'Eucgr.E01439' => 'egr', 'Eucgr.G02859' => 'egr', 'FAN01G0168' => 'fan', 'FAN01G0453' => 'fan', 'FAN01G2761' => 'fan', 'FAN02G1239' => 'fan', 'FAN03G0645' => 'fan', 'FAN03G2707' => 'fan', 'FAN03G2978' => 'fan', 'FAN04G0227' => 'fan', 'FAN06G0091' => 'fan', 'FAN06G1418' => 'fan', 'FAN06G1512' => 'fan', 'FAN06G1986' => 'fan', 'FAN06G2905' => 'fan', 'FAN06G4325' => 'fan', 'FAN08G0033' => 'fan', 'FAN09G0642' => 'fan', 'FAN10G1763' => 'fan', 'FAN10G2026' => 'fan', 'FAN10G2513' => 'fan', 'FAN10G3402' => 'fan', 'FAN10G3564' => 'fan', 'FAN10G3987' => 'fan', 'FAN13G1490' => 'fan', 'FAN14G5857' => 'fan', 'FAN18G1188' => 'fan', 'FvH4_5g00750' => 'fve', 'FvH4_6g13410' => 'fve', 'FvH4_7g11740' => 'fve', 'FvH4_7g17410' => 'fve', 'FvH4_7g18860' => 'fve', 'Glyma.01G099100' => 'gma', 'Glyma.01G142300' => 'gma', 'Glyma.03G025500' => 'gma', 'Glyma.03G069700' => 'gma', 'Glyma.03G260000' => 'gma', 'Glyma.09G269800' => 'gma', 'Glyma.10G208700' => 'gma', 'Glyma.18G220400' => 'gma', 'Glyma.20G182000' => 'gma', 'Gohir.A01G221726' => 'ghi', 'Gohir.A07G134600' => 'ghi', 'Gohir.A07G146000' => 'ghi', 'Gohir.A08G173900' => 'ghi', 'Gohir.A09G194900' => 'ghi', 'Gohir.A10G204100' => 'ghi', 'Gohir.A11G080600' => 'ghi', 'Gohir.A11G327500' => 'ghi', 'Gohir.A12G101800' => 'ghi', 'Gohir.D01G211200' => 'ghi', 'Gohir.D07G139200' => 'ghi', 'Gohir.D07G152100' => 'ghi', 'Gohir.D08G192600' => 'ghi', 'Gohir.D09G189200' => 'ghi', 'Gohir.D10G212000' => 'ghi', 'Gohir.D11G085200' => 'ghi', 'Gohir.D11G346400' => 'ghi', 'Gohir.D12G104800' => 'ghi', 'Gorai.001G151300' => 'gra', 'Gorai.001G174100' => 'gra', 'Gorai.002G257000' => 'gra', 'Gorai.004G202600' => 'gra', 'Gorai.007G090900' => 'gra', 'Gorai.007G376700' => 'gra', 'Gorai.008G114100' => 'gra', 'Gorai.011G237900' => 'gra', 'GSVIVG01005450001' => 'vvi', 'GSVIVG01016232001' => 'vvi', 'GSVIVG01026157001' => 'vvi', 'GSVIVG01027419001' => 'vvi', 'GSVIVG01027631001' => 'vvi', 'GSVIVG01034143001' => 'vvi', 'HanXRQChr03g0093921' => 'han', 'HanXRQChr04g0120001' => 'han', 'HanXRQChr04g0122561' => 'han', 'HanXRQChr09g0246851' => 'han', 'HanXRQChr10g0293311' => 'han', 'HanXRQChr13g0425231' => 'han', 'HanXRQChr16g0532571' => 'han', 'Haze_09050' => 'cav', 'Haze_15715' => 'cav', 'Haze_15716' => 'cav', 'Haze_16803' => 'cav', 'Haze_16850' => 'cav', 'Hma1.2p1_0301F.1_g118655' => 'hma', 'Hma1.2p1_0309F.1_g120590' => 'hma', 'Hma1.2p1_0936F.1_g238900' => 'hma', 'Hma1.2p1_3552F.1_g336740' => 'hma', 'HPP92_003520' => 'vpl', 'HPP92_006628' => 'vpl', 'HPP92_006645' => 'vpl', 'HPP92_014669' => 'vpl', 'HPP92_015077' => 'vpl', 'Hund16742' => 'sun', 'Hund17022' => 'sun', 'Lalb_Chr02g0152131' => 'lal', 'Lalb_Chr05g0225371' => 'lal', 'Lalb_Chr07g0189841' => 'lal', 'Lalb_Chr07g0192961' => 'lal', 'Lalb_Chr12g0208221' => 'lal', 'Lalb_Chr13g0291211' => 'lal', 'Lalb_Chr13g0291781' => 'lal', 'Lalb_Chr18g0044651' => 'lal', 'Lalb_Chr21g0313731' => 'lal', 'Lj1g0022533' => 'lja', 'Lj2A18T50' => 'lonja', 'Lj2A92G93' => 'lonja', 'Lj3A965T73' => 'lonja', 'Lj3g0000673' => 'lja', 'Lj3g0002666' => 'lja', 'Lj4g0016985' => 'lja', 'Lj5g0003625' => 'lja', 'Lj7A529G36' => 'lonja', 'Lj9A569T49' => 'lonja', 'Lj9A604T63' => 'lonja', 'Lsat_1_v5_gn_3_132060' => 'lsa', 'Lsat_1_v5_gn_4_68941' => 'lsa', 'Lsat_1_v5_gn_5_95580' => 'lsa', 'Lsat_1_v5_gn_7_161' => 'lsa', 'Lsat_1_v5_gn_7_7041' => 'lsa', 'Lsat_1_v5_gn_9_33481' => 'lsa', 'Lsat_1_v5_gn_9_68260' => 'lsa', 'Manes.01G073100' => 'mes', 'Manes.01G266300' => 'mes', 'Manes.02G033300' => 'mes', 'Manes.05G017900' => 'mes', 'Manes.05G046100' => 'mes', 'Manes.08G080900' => 'mes', 'Manes.10G049400' => 'mes', 'Mapoly0009s0186' => 'mpo', 'Mapoly0036s0118' => 'mpo', 'Mapoly0101s0046' => 'mpo', 'MBI04_g30218_MAGBIO' => 'mbi', 'MBI04_g35564_MAGBIO' => 'mbi', 'MBI12_g34011_MAGBIO' => 'mbi', 'MBI14_g04655_MAGBIO' => 'mbi', 'MCO07G653' => 'mco', 'MCO10G173' => 'mco', 'MD01G1087100' => 'mdo', 'MD01G1104200' => 'mdo', 'MD02G1205100' => 'mdo', 'MD04G1079200' => 'mdo', 'MD04G1131400' => 'mdo', 'MD07G1121600' => 'mdo', 'MD07G1157300' => 'mdo', 'MD07G1171000' => 'mdo', 'MD12G1144500' => 'mdo', 'Medtr1g094610' => 'mtr', 'Medtr4g021795' => 'mtr', 'Medtr4g023760' => 'mtr', 'Medtr7g118050' => 'mtr', 'MELO3C005582.2' => 'cme', 'MELO3C005989.2' => 'cme', 'MELO3C006192.2' => 'cme', 'MELO3C009248.2' => 'cme', 'MELO3C019817.2' => 'cme', 'Migut.B01625' => 'egut', 'Migut.B01915' => 'egut', 'Migut.F01721' => 'egut', 'Migut.J00314' => 'egut', 'MSTRG.20742' => 'ama', 'MSTRG.8134' => 'ama', 'Nitab4.5_0000096g0010' => 'nta', 'Nitab4.5_0000202g0030' => 'nta', 'Nitab4.5_0000216g0370' => 'nta', 'Nitab4.5_0000457g0230' => 'nta', 'Nitab4.5_0001702g0170' => 'nta', 'Nitab4.5_0003607g0010' => 'nta', 'Nitab4.5_0004917g0020' => 'nta', 'Nitab4.5_0007059g0010' => 'nta', 'Nitab4.5_0007184g0010' => 'nta', 'Nitab4.5_0007346g0020' => 'nta', 'Nn1g00410' => 'nnu', 'Nn1g01252' => 'nnu', 'Nn2g11168' => 'nnu', 'Nn2g13403' => 'nnu', 'Nn2g13760' => 'nnu', 'Nn4g26380' => 'nnu', 'Oeu000806.2' => 'oeu', 'Oeu005788.1' => 'oeu', 'Oeu006900.3' => 'oeu', 'Oeu007797.1' => 'oeu', 'Oeu011932.1' => 'oeu', 'Oeu022739.1' => 'oeu', 'Oeu037918.1' => 'oeu', 'Oeu055490.2' => 'oeu', 'Os01g0844400' => 'osa', 'Os02g0819100' => 'osa', 'Os03g0804300' => 'osa', 'Os05g0458000' => 'osa', 'Os07g0467800' => 'osa', 'Os12g0602200' => 'osa', 'Peaxi162Scf00013g03444' => 'pax', 'Peaxi162Scf00094g01120' => 'pax', 'Peaxi162Scf00191g01211' => 'pax', 'Peaxi162Scf00238g01110' => 'pax', 'Peaxi162Scf00330g00719' => 'pax', 'Peaxi162Scf00627g00018' => 'pax', 'PGR031G2686' => 'pgr', 'PGR042G0809' => 'pgr', 'PGR142G0193' => 'pgr', 'PGSC0003DMG400011066' => 'stu', 'PGSC0003DMG400012041' => 'stu', 'PGSC0003DMG400013678' => 'stu', 'PGSC0003DMG400023477' => 'stu', 'PGSC0003DMG400025956' => 'stu', 'PGSC0003DMG401019151' => 'stu', 'Phvul.006G116400' => 'pvu', 'Phvul.007G097300' => 'pvu', 'Phvul.010G015000' => 'pvu', 'Phvul.010G083900' => 'pvu', 'Potri.001G117100' => 'ptr', 'Potri.002G147300' => 'ptr', 'Potri.003G115600' => 'ptr', 'Potri.006G087400' => 'ptr', 'Potri.010G226100' => 'ptr', 'Potri.014G069200' => 'ptr', 'Potri.014G104000' => 'ptr', 'Potri.016G100200' => 'ptr', 'Pp3c10_20450' => 'ppa', 'Pp3c1_42400' => 'ppa', 'Pp3c3_24390' => 'ppa', 'Pp3c3_2860' => 'ppa', 'PRCOL_00003193' => 'pco', 'Prupe.2G144500' => 'ppe', 'Prupe.2G195700' => 'ppe', 'Prupe.2G209800' => 'ppe', 'Prupe.5G080000' => 'ppe', 'Prupe.6G257900' => 'ppe', 'Psat3g001160' => 'psa', 'Psat6g181880' => 'psa', 'Psat7g233720' => 'psa', 'PSO063G7587' => 'pso', 'PSO339G2145' => 'pso', 'PSO339G3369' => 'pso', 'PSO478G2747' => 'pso', 'PSO513G0140' => 'pso', 'PSO782G1614' => 'pso', 'PSO782G4889' => 'pso', 'PSO782G5485' => 'pso', 'PSO801G0241' => 'pso', 'QL07p048854' => 'qlo', 'QL08p046745' => 'qlo', 'QL08p052606' => 'qlo', 'QL08p053414' => 'qlo', 'QL08p054868' => 'qlo', 'RcHm_v2.0_Chr1g0350251' => 'rch', 'RcHm_v2.0_Chr1g0360851' => 'rch', 'RcHm_v2.0_Chr1g0362791' => 'rch', 'RcHm_v2.0_Chr3g0466281' => 'rch', 'RcHm_v2.0_Chr7g0201481' => 'rch', 'Rhsim01G0148600' => 'rsi', 'Rhsim05G0194400' => 'rsi', 'Rhsim07G0000700' => 'rsi', 'Rhsim07G0000800' => 'rsi', 'Rhsim07G0027900' => 'rsi', 'Rhsim09G0149500' => 'rsi', 'RhsimUnG0186900' => 'rsi', 'Sabra01G0089900' => 'sbr', 'Sabra02G0114700' => 'sbr', 'Sabra02G0116300' => 'sbr', 'Sabra03G0080100' => 'sbr', 'Sabra08G0024300' => 'sbr', 'Sabra10G0174300' => 'sbr', 'Sabra14G0048900' => 'sbr', 'Sabra14G0076500' => 'sbr', 'SalBow5G2513' => 'sbo', 'Sc01g0002300' => 'sci', 'Sc01g0004450' => 'sci', 'Sc06g0001680' => 'sci', 'Sc23g0003580' => 'sci', 'Sed0000913' => 'sed', 'Sed0001655' => 'sed', 'Sed0007745' => 'sed', 'Sed0010951' => 'sed', 'Sed0017599' => 'sed', 'Sed0021405' => 'sed', 'Sed0022810' => 'sed', 'SEGI_07099' => 'sgi', 'SEGI_11931' => 'sgi', 'SEGI_13187' => 'sgi', 'SEGI_29958' => 'sgi', 'SEGI_36351' => 'sgi', 'SGA_v2.0_scaffold126G33770' => 'sas', 'SGA_v2.0_scaffold153G37003' => 'sas', 'SGA_v2.0_scaffold2G01359' => 'sas', 'SGA_v2.0_scaffold5G03064' => 'sas', 'SGA_v2.0_scaffold95G28903' => 'sas', 'SHI12701' => 'shi', 'SHI26410' => 'shi', 'SHI38997' => 'shi', 'SHI53759' => 'shi', 'SHI53886' => 'shi', 'SHI54714' => 'shi', 'SMO011G0041' => 'smo', 'SMO146G0251' => 'smo', 'SMO160G0004' => 'smo', 'SMO174G0057' => 'smo', 'SMO244G0089' => 'smo', 'SMO296G0011' => 'smo', 'Solyc01g091280.3' => 'sly', 'Solyc05g047610.3' => 'sly', 'Solyc05g047640.3' => 'sly', 'Solyc05g055630.3' => 'sly', 'Solyc10g018160.2' => 'sly', 'Solyc10g084820.2' => 'sly', 'Solyc10g086565.2' => 'sly', 'Sopen01g037030' => 'spe', 'Sopen05g027920' => 'spe', 'Sopen05g034070' => 'spe', 'Sopen10g007260' => 'spe', 'Sopen10g034260' => 'spe', 'Sopen10g035950' => 'spe', 'Sp3g07710' => 'spa', 'Sp4g27420' => 'spa', 'Sp5g02450' => 'spa', 'Sp6g01280' => 'spa', 'Sp6g38480' => 'spa', 'Sp7g20780' => 'spa', 'TAR374G1413' => 'tar', 'TAR623G1777' => 'tar', 'TAR629G2370' => 'tar', 'TAR633G1759' => 'tar', 'TAR636G3387' => 'tar', 'THA.LOC104802447' => 'tha', 'THA.LOC104813916' => 'tha', 'THA.LOC104816423' => 'tha', 'THA.LOC104817246' => 'tha', 'THA.LOC104825895' => 'tha', 'Thecc.01G335200' => 'tca', 'Thecc.01G377400' => 'tca', 'Thecc.03G262200' => 'tca', 'Thecc.05G036800' => 'tca', 'Thecc.10G080500' => 'tca', 'Thecc.10G080800' => 'tca', 'Thhalv10001560m.g' => 'esa', 'Thhalv10006120m.g' => 'esa', 'Thhalv10014375m.g' => 'esa', 'Thhalv10021264m.g' => 'esa', 'Thhalv10028856m.g' => 'esa', 'TPR.G1914' => 'tpr', 'TPR.G4757' => 'tpr', 'TPR.G5595' => 'tpr', 'TWI14G0952' => 'twi', 'TWI14G1307' => 'twi', 'TWI38G2143' => 'twi', 'TWI59G0826' => 'twi', 'TWI77G0527' => 'twi', 'TWI81G0150' => 'twi', 'unitig_21.g21018' => 'ugi', 'unitig_26.g9725' => 'ugi', 'unitig_744.g24653' => 'ugi', 'unitig_749.g13778' => 'ugi', 'unitig_899.g15035' => 'ugi', 'vmacro04296' => 'vma', 'vmacro04852' => 'vma', 'vmacro13404' => 'vma', 'vmacro20169' => 'vma', 'vmacro21014' => 'vma', 'VMungo0331G0237' => 'vmu', 'VMungo0331G0706' => 'vmu', 'VMungo0331G1361' => 'vmu', 'VMungo0331G1489' => 'vmu', 'VMungo0540G1037' => 'vmu', 'VMungo0720G2487' => 'vmu', 'VMungo0720G2721' => 'vmu', 'Zm00001eb086860' => 'zma', 'Zm00001eb104760' => 'zma', 'Zm00001eb148220' => 'zma', 'Zm00001eb259030' => 'zma', 'Zm00001eb289590' => 'zma', 'Zm00001eb420150' => 'zma' ), 'gf_id' => 'HOM05D000968', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000968' ), 'data_identifier' => 'HOM05D000968', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000968', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p31690' => 'bna', 'A03p36040' => 'bna', 'A03p53730' => 'bna', 'A04p01410' => 'bna', 'A05p05420' => 'bna', 'A05p39630' => 'bna', 'A05p39640' => 'bna', 'A09p00970' => 'bna', 'A09p53060' => 'bna', 'A10p31890' => 'bna', 'Aa31LG10G15040' => 'aar', 'Aa31LG1G21090' => 'aar', 'Aa31LG1G26900' => 'aar', 'Aa31LG3G1820' => 'aar', 'Aa31LG5G1100' => 'aar', 'Aa31LG6G4740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2265' => 'aag', 'Actinidia07998' => 'ach', 'Actinidia11266' => 'ach', 'Actinidia12682' => 'ach', 'Actinidia26479' => 'ach', 'Actinidia31406' => 'ach', 'Actinidia32437' => 'ach', 'Actinidia38862' => 'ach', 'Ah.05g174230' => 'amhyb', 'Ah.05g179070' => 'amhyb', 'Ah.05g179090' => 'amhyb', 'Ah.12g059950' => 'amhyb', 'AL3G20480' => 'aly', 'AL4G44520' => 'aly', 'AL5G43110' => 'aly', 'AL6G13890' => 'aly', 'AL6G52620' => 'aly', 'AL7G30830' => 'aly', 'Aqoxy1G00899' => 'aox', 'Aqoxy5G04333' => 'aox', 'Aqoxy7G00641' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3IZ0NN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4EF6AW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W9P8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79GA3M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C43NQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFCU6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G95YVJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCHK29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LU1UG8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX91RN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGB4B1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8DA0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9H7JI' => 'arhy', 'AT3G09320' => 'ath', 'AT3G60800' => 'ath', 'AT4G00840' => 'ath', 'AT4G22750' => 'ath', 'AT5G04270' => 'ath', 'ATR0090G003' => 'atr', 'ATR0559G349' => 'atr', 'ATR0680G261' => 'atr', 'ATR0810G048' => 'atr', 'Atru.chr12.831' => 'acertr', 'Atru.chr5.303' => 'acertr', 'Atru.chr5.748' => 'acertr', 'Atru.chr8.1999' => 'acertr', 'Atru.chr9.1436' => 'acertr', 'AUR62004211' => 'cqu', 'AUR62004548' => 'cqu', 'AUR62013637' => 'cqu', 'AUR62022662' => 'cqu', 'AUR62025777' => 'cqu', 'AUR62042386' => 'cqu', 'BcaB01g02310' => 'bca', 'BcaB01g06062' => 'bca', 'BcaB02g08975' => 'bca', 'BcaB02g08980' => 'bca', 'BcaC01g04228' => 'bca', 'BcaC01g06830' => 'bca', 'BcaC02g10186' => 'bca', 'BcaC02g12214' => 'bca', 'BcaC04g24101' => 'bca', 'BcaC05g29520' => 'bca', 'BcaC05g29661' => 'bca', 'BcaC06g32130' => 'bca', 'BcaC06g32131' => 'bca', 'BcaC07g40601' => 'bca', 'BcaC07g42641' => 'bca', 'BcaNung01038' => 'bca', 'BcaNung01676' => 'bca', 'BcaNung02480' => 'bca', 'BcaNung07376' => 'bca', 'BolC3t16146H' => 'bol', 'BolC3t16637H' => 'bol', 'BolC4t22257H' => 'bol', 'BolC4t24728H' => 'bol', 'BolC5t34517H' => 'bol', 'BolC7t45703H' => 'bol', 'BolC8t51166H' => 'bol', 'BolC9t53038H' => 'bol', 'BolC9t60000H' => 'bol', 'BraA01t01345Z' => 'bra', 'BraA01t01346Z' => 'bra', 'BraA01t01348Z' => 'bra', 'BraA03t12347Z' => 'bra', 'BraA03t12775Z' => 'bra', 'BraA03t14439Z' => 'bra', 'BraA04t15860Z' => 'bra', 'BraA05t19511Z' => 'bra', 'BraA05t22746Z' => 'bra', 'BraA09t35767Z' => 'bra', 'BraA09t40732Z' => 'bra', 'BraA10t45233Z' => 'bra', 'C03p38720' => 'bna', 'C03p43680' => 'bna', 'C04p06350' => 'bna', 'C04p31800' => 'bna', 'C05p58680' => 'bna', 'C07p52110' => 'bna', 'C08p35760' => 'bna', 'C09p01050' => 'bna', 'C09p72600' => 'bna', 'CAN.G106.2' => 'can', 'CAN.G1482.1' => 'can', 'CAN.G324.12' => 'can', 'CAN.G388.20' => 'can', 'CAN.G412.7' => 'can', 'CAN.G694.32' => 'can', 'CAN.G92.12' => 'can', 'CANSAT11G2353' => 'cansat', 'CANSAT21G1398' => 'cansat', 'CANSAT56G2456' => 'cansat', 'CANSAT56G3031' => 'cansat', 'CANSAT56G4539' => 'cansat', 'CARHR083680' => 'chi', 'CARHR171190' => 'chi', 'CARHR209010' => 'chi', 'CARHR229680' => 'chi', 'CARHR249490' => 'chi', 'Carub.0003s0844' => 'cru', 'Carub.0005s2755' => 'cru', 'Carub.0006s0322' => 'cru', 'Carub.0006s3586' => 'cru', 'Carub.0007s1855' => 'cru', 'Ca_07808_v3' => 'car', 'Ca_09535_v3' => 'car', 'Ca_10548_v3' => 'car', 'Ca_19913_v3' => 'car', 'Ca_19916_v3' => 'car', 'Ca_19975_v3' => 'car', 'CBR_g22876' => 'cbr', 'CBR_g22879' => 'cbr', 'CBR_g38491' => 'cbr', 'CBR_g54185' => 'cbr', 'CBR_g54190' => 'cbr', 'Cc02_g11020' => 'ccan', 'Cc02_g23920' => 'ccan', 'Cc02_g39860' => 'ccan', 'Cc02_g39870' => 'ccan', 'Cc03_g06760' => 'ccan', 'Cc06_g02450' => 'ccan', 'Cc09_g09450' => 'ccan', 'CDE02G1959' => 'cde', 'CDE04G0600' => 'cde', 'CDE07G1996' => 'cde', 'CDE07G2078' => 'cde', 'CDE11G0611' => 'cde', 'Cfa001683' => 'cfa', 'Cfa001734' => 'cfa', 'Cfa001737' => 'cfa', 'Cfa003751' => 'cfa', 'Cfa012019' => 'cfa', 'Cfa017353' => 'cfa', 'Cfa017732' => 'cfa', 'Cfa022464' => 'cfa', 'Ciclev10012400m.g' => 'ccl', 'Ciclev10021242m.g' => 'ccl', 'Ciclev10021302m.g' => 'ccl', 'Ciclev10021463m.g' => 'ccl', 'Ciclev10032359m.g' => 'ccl', 'CiPaw.01G081000' => 'cil', 'CiPaw.01G262500' => 'cil', 'CiPaw.01G269800' => 'cil', 'CiPaw.02G168400' => 'cil', 'CiPaw.05G119500' => 'cil', 'CiPaw.11G147300' => 'cil', 'ClCG01G003630' => 'cla', 'ClCG05G000510' => 'cla', 'ClCG05G002300' => 'cla', 'ClCG08G007650' => 'cla', 'ClCG10G021250' => 'cla', 'COL.COLO4_06218' => 'col', 'COL.COLO4_12538' => 'col', 'COL.COLO4_14775' => 'col', 'COL.COLO4_23875' => 'col', 'Cpa.g.sc141.16' => 'cpa', 'Cpa.g.sc169.16' => 'cpa', 'Cpa.g.sc244.4' => 'cpa', 'Cpa.g.sc244.5' => 'cpa', 'Cpa.g.sc29.87' => 'cpa', 'Cpa.g.sc53.115' => 'cpa', 'Cre03.g207502' => 'cre', 'Cre06.g277000' => 'cre', 'Cre09.g394050' => 'cre', 'CsaV3_3G007680' => 'csa', 'CsaV3_3G009710' => 'csa', 'CsaV3_3G034790' => 'csa', 'CsaV3_5G003750' => 'csa', 'CsaV3_6G036620' => 'csa', 'CSS0002288' => 'camsi', 'CSS0011250' => 'camsi', 'CSS0021619' => 'camsi', 'CSS0046701' => 'camsi', 'DCAR_006420' => 'dca', 'DCAR_006865' => 'dca', 'DCAR_008558' => 'dca', 'DCAR_028754' => 'dca', 'DCAR_028755' => 'dca', 'Dinv31218' => 'din', 'Dinv32371' => 'din', 'Dinv34250' => 'din', 'Dinv37156' => 'din', 'Dinv43704' => 'din', 'Duzib093G1811' => 'dzi', 'Duzib106G1622' => 'dzi', 'Duzib114G0504' => 'dzi', 'Duzib128G0338' => 'dzi', 'Duzib128G1577' => 'dzi', 'Duzib133G0104' => 'dzi', 'Duzib133G1080' => 'dzi', 'Duzib138G0324' => 'dzi', 'Duzib138G0394' => 'dzi', 'Duzib205G0122' => 'dzi', 'Duzib268G1020' => 'dzi', 'Duzib268G1359' => 'dzi', 'ECA232G3929' => 'eca', 'ECA236G2210' => 'eca', 'ECA236G2287' => 'eca', 'ECA240G4568' => 'eca', 'ECA247G0894' => 'eca', 'EL10Ac1g00200' => 'bvu', 'EL10Ac1g00886' => 'bvu', 'EL10As1g23091' => 'bvu', 'EL10As1g23092' => 'bvu', 'Eucgr.A01284' => 'egr', 'Eucgr.A01285' => 'egr', 'Eucgr.D02456' => 'egr', 'Eucgr.E00018' => 'egr', 'Eucgr.E01439' => 'egr', 'Eucgr.G02859' => 'egr', 'FAN01G0168' => 'fan', 'FAN01G0453' => 'fan', 'FAN01G2761' => 'fan', 'FAN02G1239' => 'fan', 'FAN03G0645' => 'fan', 'FAN03G2707' => 'fan', 'FAN03G2978' => 'fan', 'FAN04G0227' => 'fan', 'FAN06G0091' => 'fan', 'FAN06G1418' => 'fan', 'FAN06G1512' => 'fan', 'FAN06G1986' => 'fan', 'FAN06G2905' => 'fan', 'FAN06G4325' => 'fan', 'FAN08G0033' => 'fan', 'FAN09G0642' => 'fan', 'FAN10G1763' => 'fan', 'FAN10G2026' => 'fan', 'FAN10G2513' => 'fan', 'FAN10G3402' => 'fan', 'FAN10G3564' => 'fan', 'FAN10G3987' => 'fan', 'FAN13G1490' => 'fan', 'FAN14G5857' => 'fan', 'FAN18G1188' => 'fan', 'FvH4_5g00750' => 'fve', 'FvH4_6g13410' => 'fve', 'FvH4_7g11740' => 'fve', 'FvH4_7g17410' => 'fve', 'FvH4_7g18860' => 'fve', 'Glyma.01G099100' => 'gma', 'Glyma.01G142300' => 'gma', 'Glyma.03G025500' => 'gma', 'Glyma.03G069700' => 'gma', 'Glyma.03G260000' => 'gma', 'Glyma.09G269800' => 'gma', 'Glyma.10G208700' => 'gma', 'Glyma.18G220400' => 'gma', 'Glyma.20G182000' => 'gma', 'Gohir.A01G221726' => 'ghi', 'Gohir.A07G134600' => 'ghi', 'Gohir.A07G146000' => 'ghi', 'Gohir.A08G173900' => 'ghi', 'Gohir.A09G194900' => 'ghi', 'Gohir.A10G204100' => 'ghi', 'Gohir.A11G080600' => 'ghi', 'Gohir.A11G327500' => 'ghi', 'Gohir.A12G101800' => 'ghi', 'Gohir.D01G211200' => 'ghi', 'Gohir.D07G139200' => 'ghi', 'Gohir.D07G152100' => 'ghi', 'Gohir.D08G192600' => 'ghi', 'Gohir.D09G189200' => 'ghi', 'Gohir.D10G212000' => 'ghi', 'Gohir.D11G085200' => 'ghi', 'Gohir.D11G346400' => 'ghi', 'Gohir.D12G104800' => 'ghi', 'Gorai.001G151300' => 'gra', 'Gorai.001G174100' => 'gra', 'Gorai.002G257000' => 'gra', 'Gorai.004G202600' => 'gra', 'Gorai.007G090900' => 'gra', 'Gorai.007G376700' => 'gra', 'Gorai.008G114100' => 'gra', 'Gorai.011G237900' => 'gra', 'GSVIVG01005450001' => 'vvi', 'GSVIVG01016232001' => 'vvi', 'GSVIVG01026157001' => 'vvi', 'GSVIVG01027419001' => 'vvi', 'GSVIVG01027631001' => 'vvi', 'GSVIVG01034143001' => 'vvi', 'HanXRQChr03g0093921' => 'han', 'HanXRQChr04g0120001' => 'han', 'HanXRQChr04g0122561' => 'han', 'HanXRQChr09g0246851' => 'han', 'HanXRQChr10g0293311' => 'han', 'HanXRQChr13g0425231' => 'han', 'HanXRQChr16g0532571' => 'han', 'Haze_09050' => 'cav', 'Haze_15715' => 'cav', 'Haze_15716' => 'cav', 'Haze_16803' => 'cav', 'Haze_16850' => 'cav', 'Hma1.2p1_0301F.1_g118655' => 'hma', 'Hma1.2p1_0309F.1_g120590' => 'hma', 'Hma1.2p1_0936F.1_g238900' => 'hma', 'Hma1.2p1_3552F.1_g336740' => 'hma', 'HPP92_003520' => 'vpl', 'HPP92_006628' => 'vpl', 'HPP92_006645' => 'vpl', 'HPP92_014669' => 'vpl', 'HPP92_015077' => 'vpl', 'Hund16742' => 'sun', 'Hund17022' => 'sun', 'Lalb_Chr02g0152131' => 'lal', 'Lalb_Chr05g0225371' => 'lal', 'Lalb_Chr07g0189841' => 'lal', 'Lalb_Chr07g0192961' => 'lal', 'Lalb_Chr12g0208221' => 'lal', 'Lalb_Chr13g0291211' => 'lal', 'Lalb_Chr13g0291781' => 'lal', 'Lalb_Chr18g0044651' => 'lal', 'Lalb_Chr21g0313731' => 'lal', 'Lj1g0022533' => 'lja', 'Lj2A18T50' => 'lonja', 'Lj2A92G93' => 'lonja', 'Lj3A965T73' => 'lonja', 'Lj3g0000673' => 'lja', 'Lj3g0002666' => 'lja', 'Lj4g0016985' => 'lja', 'Lj5g0003625' => 'lja', 'Lj7A529G36' => 'lonja', 'Lj9A569T49' => 'lonja', 'Lj9A604T63' => 'lonja', 'Lsat_1_v5_gn_3_132060' => 'lsa', 'Lsat_1_v5_gn_4_68941' => 'lsa', 'Lsat_1_v5_gn_5_95580' => 'lsa', 'Lsat_1_v5_gn_7_161' => 'lsa', 'Lsat_1_v5_gn_7_7041' => 'lsa', 'Lsat_1_v5_gn_9_33481' => 'lsa', 'Lsat_1_v5_gn_9_68260' => 'lsa', 'Manes.01G073100' => 'mes', 'Manes.01G266300' => 'mes', 'Manes.02G033300' => 'mes', 'Manes.05G017900' => 'mes', 'Manes.05G046100' => 'mes', 'Manes.08G080900' => 'mes', 'Manes.10G049400' => 'mes', 'Mapoly0009s0186' => 'mpo', 'Mapoly0036s0118' => 'mpo', 'Mapoly0101s0046' => 'mpo', 'MBI04_g30218_MAGBIO' => 'mbi', 'MBI04_g35564_MAGBIO' => 'mbi', 'MBI12_g34011_MAGBIO' => 'mbi', 'MBI14_g04655_MAGBIO' => 'mbi', 'MCO07G653' => 'mco', 'MCO10G173' => 'mco', 'MD01G1087100' => 'mdo', 'MD01G1104200' => 'mdo', 'MD02G1205100' => 'mdo', 'MD04G1079200' => 'mdo', 'MD04G1131400' => 'mdo', 'MD07G1121600' => 'mdo', 'MD07G1157300' => 'mdo', 'MD07G1171000' => 'mdo', 'MD12G1144500' => 'mdo', 'Medtr1g094610' => 'mtr', 'Medtr4g021795' => 'mtr', 'Medtr4g023760' => 'mtr', 'Medtr7g118050' => 'mtr', 'MELO3C005582.2' => 'cme', 'MELO3C005989.2' => 'cme', 'MELO3C006192.2' => 'cme', 'MELO3C009248.2' => 'cme', 'MELO3C019817.2' => 'cme', 'Migut.B01625' => 'egut', 'Migut.B01915' => 'egut', 'Migut.F01721' => 'egut', 'Migut.J00314' => 'egut', 'MSTRG.20742' => 'ama', 'MSTRG.8134' => 'ama', 'Nitab4.5_0000096g0010' => 'nta', 'Nitab4.5_0000202g0030' => 'nta', 'Nitab4.5_0000216g0370' => 'nta', 'Nitab4.5_0000457g0230' => 'nta', 'Nitab4.5_0001702g0170' => 'nta', 'Nitab4.5_0003607g0010' => 'nta', 'Nitab4.5_0004917g0020' => 'nta', 'Nitab4.5_0007059g0010' => 'nta', 'Nitab4.5_0007184g0010' => 'nta', 'Nitab4.5_0007346g0020' => 'nta', 'Nn1g00410' => 'nnu', 'Nn1g01252' => 'nnu', 'Nn2g11168' => 'nnu', 'Nn2g13403' => 'nnu', 'Nn2g13760' => 'nnu', 'Nn4g26380' => 'nnu', 'Oeu000806.2' => 'oeu', 'Oeu005788.1' => 'oeu', 'Oeu006900.3' => 'oeu', 'Oeu007797.1' => 'oeu', 'Oeu011932.1' => 'oeu', 'Oeu022739.1' => 'oeu', 'Oeu037918.1' => 'oeu', 'Oeu055490.2' => 'oeu', 'Os01g0844400' => 'osa', 'Os02g0819100' => 'osa', 'Os03g0804300' => 'osa', 'Os05g0458000' => 'osa', 'Os07g0467800' => 'osa', 'Os12g0602200' => 'osa', 'Peaxi162Scf00013g03444' => 'pax', 'Peaxi162Scf00094g01120' => 'pax', 'Peaxi162Scf00191g01211' => 'pax', 'Peaxi162Scf00238g01110' => 'pax', 'Peaxi162Scf00330g00719' => 'pax', 'Peaxi162Scf00627g00018' => 'pax', 'PGR031G2686' => 'pgr', 'PGR042G0809' => 'pgr', 'PGR142G0193' => 'pgr', 'PGSC0003DMG400011066' => 'stu', 'PGSC0003DMG400012041' => 'stu', 'PGSC0003DMG400013678' => 'stu', 'PGSC0003DMG400023477' => 'stu', 'PGSC0003DMG400025956' => 'stu', 'PGSC0003DMG401019151' => 'stu', 'Phvul.006G116400' => 'pvu', 'Phvul.007G097300' => 'pvu', 'Phvul.010G015000' => 'pvu', 'Phvul.010G083900' => 'pvu', 'Potri.001G117100' => 'ptr', 'Potri.002G147300' => 'ptr', 'Potri.003G115600' => 'ptr', 'Potri.006G087400' => 'ptr', 'Potri.010G226100' => 'ptr', 'Potri.014G069200' => 'ptr', 'Potri.014G104000' => 'ptr', 'Potri.016G100200' => 'ptr', 'Pp3c10_20450' => 'ppa', 'Pp3c1_42400' => 'ppa', 'Pp3c3_24390' => 'ppa', 'Pp3c3_2860' => 'ppa', 'PRCOL_00003193' => 'pco', 'Prupe.2G144500' => 'ppe', 'Prupe.2G195700' => 'ppe', 'Prupe.2G209800' => 'ppe', 'Prupe.5G080000' => 'ppe', 'Prupe.6G257900' => 'ppe', 'Psat3g001160' => 'psa', 'Psat6g181880' => 'psa', 'Psat7g233720' => 'psa', 'PSO063G7587' => 'pso', 'PSO339G2145' => 'pso', 'PSO339G3369' => 'pso', 'PSO478G2747' => 'pso', 'PSO513G0140' => 'pso', 'PSO782G1614' => 'pso', 'PSO782G4889' => 'pso', 'PSO782G5485' => 'pso', 'PSO801G0241' => 'pso', 'QL07p048854' => 'qlo', 'QL08p046745' => 'qlo', 'QL08p052606' => 'qlo', 'QL08p053414' => 'qlo', 'QL08p054868' => 'qlo', 'RcHm_v2.0_Chr1g0350251' => 'rch', 'RcHm_v2.0_Chr1g0360851' => 'rch', 'RcHm_v2.0_Chr1g0362791' => 'rch', 'RcHm_v2.0_Chr3g0466281' => 'rch', 'RcHm_v2.0_Chr7g0201481' => 'rch', 'Rhsim01G0148600' => 'rsi', 'Rhsim05G0194400' => 'rsi', 'Rhsim07G0000700' => 'rsi', 'Rhsim07G0000800' => 'rsi', 'Rhsim07G0027900' => 'rsi', 'Rhsim09G0149500' => 'rsi', 'RhsimUnG0186900' => 'rsi', 'Sabra01G0089900' => 'sbr', 'Sabra02G0114700' => 'sbr', 'Sabra02G0116300' => 'sbr', 'Sabra03G0080100' => 'sbr', 'Sabra08G0024300' => 'sbr', 'Sabra10G0174300' => 'sbr', 'Sabra14G0048900' => 'sbr', 'Sabra14G0076500' => 'sbr', 'SalBow5G2513' => 'sbo', 'Sc01g0002300' => 'sci', 'Sc01g0004450' => 'sci', 'Sc06g0001680' => 'sci', 'Sc23g0003580' => 'sci', 'Sed0000913' => 'sed', 'Sed0001655' => 'sed', 'Sed0007745' => 'sed', 'Sed0010951' => 'sed', 'Sed0017599' => 'sed', 'Sed0021405' => 'sed', 'Sed0022810' => 'sed', 'SEGI_07099' => 'sgi', 'SEGI_11931' => 'sgi', 'SEGI_13187' => 'sgi', 'SEGI_29958' => 'sgi', 'SEGI_36351' => 'sgi', 'SGA_v2.0_scaffold126G33770' => 'sas', 'SGA_v2.0_scaffold153G37003' => 'sas', 'SGA_v2.0_scaffold2G01359' => 'sas', 'SGA_v2.0_scaffold5G03064' => 'sas', 'SGA_v2.0_scaffold95G28903' => 'sas', 'SHI12701' => 'shi', 'SHI26410' => 'shi', 'SHI38997' => 'shi', 'SHI53759' => 'shi', 'SHI53886' => 'shi', 'SHI54714' => 'shi', 'SMO011G0041' => 'smo', 'SMO146G0251' => 'smo', 'SMO160G0004' => 'smo', 'SMO174G0057' => 'smo', 'SMO244G0089' => 'smo', 'SMO296G0011' => 'smo', 'Solyc01g091280.3' => 'sly', 'Solyc05g047610.3' => 'sly', 'Solyc05g047640.3' => 'sly', 'Solyc05g055630.3' => 'sly', 'Solyc10g018160.2' => 'sly', 'Solyc10g084820.2' => 'sly', 'Solyc10g086565.2' => 'sly', 'Sopen01g037030' => 'spe', 'Sopen05g027920' => 'spe', 'Sopen05g034070' => 'spe', 'Sopen10g007260' => 'spe', 'Sopen10g034260' => 'spe', 'Sopen10g035950' => 'spe', 'Sp3g07710' => 'spa', 'Sp4g27420' => 'spa', 'Sp5g02450' => 'spa', 'Sp6g01280' => 'spa', 'Sp6g38480' => 'spa', 'Sp7g20780' => 'spa', 'TAR374G1413' => 'tar', 'TAR623G1777' => 'tar', 'TAR629G2370' => 'tar', 'TAR633G1759' => 'tar', 'TAR636G3387' => 'tar', 'THA.LOC104802447' => 'tha', 'THA.LOC104813916' => 'tha', 'THA.LOC104816423' => 'tha', 'THA.LOC104817246' => 'tha', 'THA.LOC104825895' => 'tha', 'Thecc.01G335200' => 'tca', 'Thecc.01G377400' => 'tca', 'Thecc.03G262200' => 'tca', 'Thecc.05G036800' => 'tca', 'Thecc.10G080500' => 'tca', 'Thecc.10G080800' => 'tca', 'Thhalv10001560m.g' => 'esa', 'Thhalv10006120m.g' => 'esa', 'Thhalv10014375m.g' => 'esa', 'Thhalv10021264m.g' => 'esa', 'Thhalv10028856m.g' => 'esa', 'TPR.G1914' => 'tpr', 'TPR.G4757' => 'tpr', 'TPR.G5595' => 'tpr', 'TWI14G0952' => 'twi', 'TWI14G1307' => 'twi', 'TWI38G2143' => 'twi', 'TWI59G0826' => 'twi', 'TWI77G0527' => 'twi', 'TWI81G0150' => 'twi', 'unitig_21.g21018' => 'ugi', 'unitig_26.g9725' => 'ugi', 'unitig_744.g24653' => 'ugi', 'unitig_749.g13778' => 'ugi', 'unitig_899.g15035' => 'ugi', 'vmacro04296' => 'vma', 'vmacro04852' => 'vma', 'vmacro13404' => 'vma', 'vmacro20169' => 'vma', 'vmacro21014' => 'vma', 'VMungo0331G0237' => 'vmu', 'VMungo0331G0706' => 'vmu', 'VMungo0331G1361' => 'vmu', 'VMungo0331G1489' => 'vmu', 'VMungo0540G1037' => 'vmu', 'VMungo0720G2487' => 'vmu', 'VMungo0720G2721' => 'vmu', 'Zm00001eb086860' => 'zma', 'Zm00001eb104760' => 'zma', 'Zm00001eb148220' => 'zma', 'Zm00001eb259030' => 'zma', 'Zm00001eb289590' => 'zma', 'Zm00001eb420150' => 'zma' ) $gf_id = 'HOM05D000968' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000968' ) $data_identifier = 'HOM05D000968' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 19, 'bol' => (int) 9, 'bra' => (int) 12, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 5, 'ccan' => (int) 7, 'cde' => (int) 5, 'cfa' => (int) 8, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 4, 'dca' => (int) 5, 'din' => (int) 5, 'dzi' => (int) 12, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 25, 'fve' => (int) 5, 'gma' => (int) 9, 'ghi' => (int) 18, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 7, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 5, 'sun' => (int) 2, 'lal' => (int) 9, 'lja' => (int) 5, 'lonja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 9, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 2, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 3, 'stu' => (int) 6, 'pvu' => (int) 4, 'ptr' => (int) 8, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 3, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 1, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 5, 'sas' => (int) 5, 'shi' => (int) 6, 'smo' => (int) 6, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 3, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420150' $species_info = array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ) $local_species = 'cav' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000968', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p31690' => 'bna', 'A03p36040' => 'bna', 'A03p53730' => 'bna', 'A04p01410' => 'bna', 'A05p05420' => 'bna', 'A05p39630' => 'bna', 'A05p39640' => 'bna', 'A09p00970' => 'bna', 'A09p53060' => 'bna', 'A10p31890' => 'bna', 'Aa31LG10G15040' => 'aar', 'Aa31LG1G21090' => 'aar', 'Aa31LG1G26900' => 'aar', 'Aa31LG3G1820' => 'aar', 'Aa31LG5G1100' => 'aar', 'Aa31LG6G4740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2265' => 'aag', 'Actinidia07998' => 'ach', 'Actinidia11266' => 'ach', 'Actinidia12682' => 'ach', 'Actinidia26479' => 'ach', 'Actinidia31406' => 'ach', 'Actinidia32437' => 'ach', 'Actinidia38862' => 'ach', 'Ah.05g174230' => 'amhyb', 'Ah.05g179070' => 'amhyb', 'Ah.05g179090' => 'amhyb', 'Ah.12g059950' => 'amhyb', 'AL3G20480' => 'aly', 'AL4G44520' => 'aly', 'AL5G43110' => 'aly', 'AL6G13890' => 'aly', 'AL6G52620' => 'aly', 'AL7G30830' => 'aly', 'Aqoxy1G00899' => 'aox', 'Aqoxy5G04333' => 'aox', 'Aqoxy7G00641' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3IZ0NN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4EF6AW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W9P8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79GA3M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C43NQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFCU6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G95YVJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCHK29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LU1UG8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX91RN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGB4B1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8DA0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9H7JI' => 'arhy', 'AT3G09320' => 'ath', 'AT3G60800' => 'ath', 'AT4G00840' => 'ath', 'AT4G22750' => 'ath', 'AT5G04270' => 'ath', 'ATR0090G003' => 'atr', 'ATR0559G349' => 'atr', 'ATR0680G261' => 'atr', 'ATR0810G048' => 'atr', 'Atru.chr12.831' => 'acertr', 'Atru.chr5.303' => 'acertr', 'Atru.chr5.748' => 'acertr', 'Atru.chr8.1999' => 'acertr', 'Atru.chr9.1436' => 'acertr', 'AUR62004211' => 'cqu', 'AUR62004548' => 'cqu', 'AUR62013637' => 'cqu', 'AUR62022662' => 'cqu', 'AUR62025777' => 'cqu', 'AUR62042386' => 'cqu', 'BcaB01g02310' => 'bca', 'BcaB01g06062' => 'bca', 'BcaB02g08975' => 'bca', 'BcaB02g08980' => 'bca', 'BcaC01g04228' => 'bca', 'BcaC01g06830' => 'bca', 'BcaC02g10186' => 'bca', 'BcaC02g12214' => 'bca', 'BcaC04g24101' => 'bca', 'BcaC05g29520' => 'bca', 'BcaC05g29661' => 'bca', 'BcaC06g32130' => 'bca', 'BcaC06g32131' => 'bca', 'BcaC07g40601' => 'bca', 'BcaC07g42641' => 'bca', 'BcaNung01038' => 'bca', 'BcaNung01676' => 'bca', 'BcaNung02480' => 'bca', 'BcaNung07376' => 'bca', 'BolC3t16146H' => 'bol', 'BolC3t16637H' => 'bol', 'BolC4t22257H' => 'bol', 'BolC4t24728H' => 'bol', 'BolC5t34517H' => 'bol', 'BolC7t45703H' => 'bol', 'BolC8t51166H' => 'bol', 'BolC9t53038H' => 'bol', 'BolC9t60000H' => 'bol', 'BraA01t01345Z' => 'bra', 'BraA01t01346Z' => 'bra', 'BraA01t01348Z' => 'bra', 'BraA03t12347Z' => 'bra', 'BraA03t12775Z' => 'bra', 'BraA03t14439Z' => 'bra', 'BraA04t15860Z' => 'bra', 'BraA05t19511Z' => 'bra', 'BraA05t22746Z' => 'bra', 'BraA09t35767Z' => 'bra', 'BraA09t40732Z' => 'bra', 'BraA10t45233Z' => 'bra', 'C03p38720' => 'bna', 'C03p43680' => 'bna', 'C04p06350' => 'bna', 'C04p31800' => 'bna', 'C05p58680' => 'bna', 'C07p52110' => 'bna', 'C08p35760' => 'bna', 'C09p01050' => 'bna', 'C09p72600' => 'bna', 'CAN.G106.2' => 'can', 'CAN.G1482.1' => 'can', 'CAN.G324.12' => 'can', 'CAN.G388.20' => 'can', 'CAN.G412.7' => 'can', 'CAN.G694.32' => 'can', 'CAN.G92.12' => 'can', 'CANSAT11G2353' => 'cansat', 'CANSAT21G1398' => 'cansat', 'CANSAT56G2456' => 'cansat', 'CANSAT56G3031' => 'cansat', 'CANSAT56G4539' => 'cansat', 'CARHR083680' => 'chi', 'CARHR171190' => 'chi', 'CARHR209010' => 'chi', 'CARHR229680' => 'chi', 'CARHR249490' => 'chi', 'Carub.0003s0844' => 'cru', 'Carub.0005s2755' => 'cru', 'Carub.0006s0322' => 'cru', 'Carub.0006s3586' => 'cru', 'Carub.0007s1855' => 'cru', 'Ca_07808_v3' => 'car', 'Ca_09535_v3' => 'car', 'Ca_10548_v3' => 'car', 'Ca_19913_v3' => 'car', 'Ca_19916_v3' => 'car', 'Ca_19975_v3' => 'car', 'CBR_g22876' => 'cbr', 'CBR_g22879' => 'cbr', 'CBR_g38491' => 'cbr', 'CBR_g54185' => 'cbr', 'CBR_g54190' => 'cbr', 'Cc02_g11020' => 'ccan', 'Cc02_g23920' => 'ccan', 'Cc02_g39860' => 'ccan', 'Cc02_g39870' => 'ccan', 'Cc03_g06760' => 'ccan', 'Cc06_g02450' => 'ccan', 'Cc09_g09450' => 'ccan', 'CDE02G1959' => 'cde', 'CDE04G0600' => 'cde', 'CDE07G1996' => 'cde', 'CDE07G2078' => 'cde', 'CDE11G0611' => 'cde', 'Cfa001683' => 'cfa', 'Cfa001734' => 'cfa', 'Cfa001737' => 'cfa', 'Cfa003751' => 'cfa', 'Cfa012019' => 'cfa', 'Cfa017353' => 'cfa', 'Cfa017732' => 'cfa', 'Cfa022464' => 'cfa', 'Ciclev10012400m.g' => 'ccl', 'Ciclev10021242m.g' => 'ccl', 'Ciclev10021302m.g' => 'ccl', 'Ciclev10021463m.g' => 'ccl', 'Ciclev10032359m.g' => 'ccl', 'CiPaw.01G081000' => 'cil', 'CiPaw.01G262500' => 'cil', 'CiPaw.01G269800' => 'cil', 'CiPaw.02G168400' => 'cil', 'CiPaw.05G119500' => 'cil', 'CiPaw.11G147300' => 'cil', 'ClCG01G003630' => 'cla', 'ClCG05G000510' => 'cla', 'ClCG05G002300' => 'cla', 'ClCG08G007650' => 'cla', 'ClCG10G021250' => 'cla', 'COL.COLO4_06218' => 'col', 'COL.COLO4_12538' => 'col', 'COL.COLO4_14775' => 'col', 'COL.COLO4_23875' => 'col', 'Cpa.g.sc141.16' => 'cpa', 'Cpa.g.sc169.16' => 'cpa', 'Cpa.g.sc244.4' => 'cpa', 'Cpa.g.sc244.5' => 'cpa', 'Cpa.g.sc29.87' => 'cpa', 'Cpa.g.sc53.115' => 'cpa', 'Cre03.g207502' => 'cre', 'Cre06.g277000' => 'cre', 'Cre09.g394050' => 'cre', 'CsaV3_3G007680' => 'csa', 'CsaV3_3G009710' => 'csa', 'CsaV3_3G034790' => 'csa', 'CsaV3_5G003750' => 'csa', 'CsaV3_6G036620' => 'csa', 'CSS0002288' => 'camsi', 'CSS0011250' => 'camsi', 'CSS0021619' => 'camsi', 'CSS0046701' => 'camsi', 'DCAR_006420' => 'dca', 'DCAR_006865' => 'dca', 'DCAR_008558' => 'dca', 'DCAR_028754' => 'dca', 'DCAR_028755' => 'dca', 'Dinv31218' => 'din', 'Dinv32371' => 'din', 'Dinv34250' => 'din', 'Dinv37156' => 'din', 'Dinv43704' => 'din', 'Duzib093G1811' => 'dzi', 'Duzib106G1622' => 'dzi', 'Duzib114G0504' => 'dzi', 'Duzib128G0338' => 'dzi', 'Duzib128G1577' => 'dzi', 'Duzib133G0104' => 'dzi', 'Duzib133G1080' => 'dzi', 'Duzib138G0324' => 'dzi', 'Duzib138G0394' => 'dzi', 'Duzib205G0122' => 'dzi', 'Duzib268G1020' => 'dzi', 'Duzib268G1359' => 'dzi', 'ECA232G3929' => 'eca', 'ECA236G2210' => 'eca', 'ECA236G2287' => 'eca', 'ECA240G4568' => 'eca', 'ECA247G0894' => 'eca', 'EL10Ac1g00200' => 'bvu', 'EL10Ac1g00886' => 'bvu', 'EL10As1g23091' => 'bvu', 'EL10As1g23092' => 'bvu', 'Eucgr.A01284' => 'egr', 'Eucgr.A01285' => 'egr', 'Eucgr.D02456' => 'egr', 'Eucgr.E00018' => 'egr', 'Eucgr.E01439' => 'egr', 'Eucgr.G02859' => 'egr', 'FAN01G0168' => 'fan', 'FAN01G0453' => 'fan', 'FAN01G2761' => 'fan', 'FAN02G1239' => 'fan', 'FAN03G0645' => 'fan', 'FAN03G2707' => 'fan', 'FAN03G2978' => 'fan', 'FAN04G0227' => 'fan', 'FAN06G0091' => 'fan', 'FAN06G1418' => 'fan', 'FAN06G1512' => 'fan', 'FAN06G1986' => 'fan', 'FAN06G2905' => 'fan', 'FAN06G4325' => 'fan', 'FAN08G0033' => 'fan', 'FAN09G0642' => 'fan', 'FAN10G1763' => 'fan', 'FAN10G2026' => 'fan', 'FAN10G2513' => 'fan', 'FAN10G3402' => 'fan', 'FAN10G3564' => 'fan', 'FAN10G3987' => 'fan', 'FAN13G1490' => 'fan', 'FAN14G5857' => 'fan', 'FAN18G1188' => 'fan', 'FvH4_5g00750' => 'fve', 'FvH4_6g13410' => 'fve', 'FvH4_7g11740' => 'fve', 'FvH4_7g17410' => 'fve', 'FvH4_7g18860' => 'fve', 'Glyma.01G099100' => 'gma', 'Glyma.01G142300' => 'gma', 'Glyma.03G025500' => 'gma', 'Glyma.03G069700' => 'gma', 'Glyma.03G260000' => 'gma', 'Glyma.09G269800' => 'gma', 'Glyma.10G208700' => 'gma', 'Glyma.18G220400' => 'gma', 'Glyma.20G182000' => 'gma', 'Gohir.A01G221726' => 'ghi', 'Gohir.A07G134600' => 'ghi', 'Gohir.A07G146000' => 'ghi', 'Gohir.A08G173900' => 'ghi', 'Gohir.A09G194900' => 'ghi', 'Gohir.A10G204100' => 'ghi', 'Gohir.A11G080600' => 'ghi', 'Gohir.A11G327500' => 'ghi', 'Gohir.A12G101800' => 'ghi', 'Gohir.D01G211200' => 'ghi', 'Gohir.D07G139200' => 'ghi', 'Gohir.D07G152100' => 'ghi', 'Gohir.D08G192600' => 'ghi', 'Gohir.D09G189200' => 'ghi', 'Gohir.D10G212000' => 'ghi', 'Gohir.D11G085200' => 'ghi', 'Gohir.D11G346400' => 'ghi', 'Gohir.D12G104800' => 'ghi', 'Gorai.001G151300' => 'gra', 'Gorai.001G174100' => 'gra', 'Gorai.002G257000' => 'gra', 'Gorai.004G202600' => 'gra', 'Gorai.007G090900' => 'gra', 'Gorai.007G376700' => 'gra', 'Gorai.008G114100' => 'gra', 'Gorai.011G237900' => 'gra', 'GSVIVG01005450001' => 'vvi', 'GSVIVG01016232001' => 'vvi', 'GSVIVG01026157001' => 'vvi', 'GSVIVG01027419001' => 'vvi', 'GSVIVG01027631001' => 'vvi', 'GSVIVG01034143001' => 'vvi', 'HanXRQChr03g0093921' => 'han', 'HanXRQChr04g0120001' => 'han', 'HanXRQChr04g0122561' => 'han', 'HanXRQChr09g0246851' => 'han', 'HanXRQChr10g0293311' => 'han', 'HanXRQChr13g0425231' => 'han', 'HanXRQChr16g0532571' => 'han', 'Haze_09050' => 'cav', 'Haze_15715' => 'cav', 'Haze_15716' => 'cav', 'Haze_16803' => 'cav', 'Haze_16850' => 'cav', 'Hma1.2p1_0301F.1_g118655' => 'hma', 'Hma1.2p1_0309F.1_g120590' => 'hma', 'Hma1.2p1_0936F.1_g238900' => 'hma', 'Hma1.2p1_3552F.1_g336740' => 'hma', 'HPP92_003520' => 'vpl', 'HPP92_006628' => 'vpl', 'HPP92_006645' => 'vpl', 'HPP92_014669' => 'vpl', 'HPP92_015077' => 'vpl', 'Hund16742' => 'sun', 'Hund17022' => 'sun', 'Lalb_Chr02g0152131' => 'lal', 'Lalb_Chr05g0225371' => 'lal', 'Lalb_Chr07g0189841' => 'lal', 'Lalb_Chr07g0192961' => 'lal', 'Lalb_Chr12g0208221' => 'lal', 'Lalb_Chr13g0291211' => 'lal', 'Lalb_Chr13g0291781' => 'lal', 'Lalb_Chr18g0044651' => 'lal', 'Lalb_Chr21g0313731' => 'lal', 'Lj1g0022533' => 'lja', 'Lj2A18T50' => 'lonja', 'Lj2A92G93' => 'lonja', 'Lj3A965T73' => 'lonja', 'Lj3g0000673' => 'lja', 'Lj3g0002666' => 'lja', 'Lj4g0016985' => 'lja', 'Lj5g0003625' => 'lja', 'Lj7A529G36' => 'lonja', 'Lj9A569T49' => 'lonja', 'Lj9A604T63' => 'lonja', 'Lsat_1_v5_gn_3_132060' => 'lsa', 'Lsat_1_v5_gn_4_68941' => 'lsa', 'Lsat_1_v5_gn_5_95580' => 'lsa', 'Lsat_1_v5_gn_7_161' => 'lsa', 'Lsat_1_v5_gn_7_7041' => 'lsa', 'Lsat_1_v5_gn_9_33481' => 'lsa', 'Lsat_1_v5_gn_9_68260' => 'lsa', 'Manes.01G073100' => 'mes', 'Manes.01G266300' => 'mes', 'Manes.02G033300' => 'mes', 'Manes.05G017900' => 'mes', 'Manes.05G046100' => 'mes', 'Manes.08G080900' => 'mes', 'Manes.10G049400' => 'mes', 'Mapoly0009s0186' => 'mpo', 'Mapoly0036s0118' => 'mpo', 'Mapoly0101s0046' => 'mpo', 'MBI04_g30218_MAGBIO' => 'mbi', 'MBI04_g35564_MAGBIO' => 'mbi', 'MBI12_g34011_MAGBIO' => 'mbi', 'MBI14_g04655_MAGBIO' => 'mbi', 'MCO07G653' => 'mco', 'MCO10G173' => 'mco', 'MD01G1087100' => 'mdo', 'MD01G1104200' => 'mdo', 'MD02G1205100' => 'mdo', 'MD04G1079200' => 'mdo', 'MD04G1131400' => 'mdo', 'MD07G1121600' => 'mdo', 'MD07G1157300' => 'mdo', 'MD07G1171000' => 'mdo', 'MD12G1144500' => 'mdo', 'Medtr1g094610' => 'mtr', 'Medtr4g021795' => 'mtr', 'Medtr4g023760' => 'mtr', 'Medtr7g118050' => 'mtr', 'MELO3C005582.2' => 'cme', 'MELO3C005989.2' => 'cme', 'MELO3C006192.2' => 'cme', 'MELO3C009248.2' => 'cme', 'MELO3C019817.2' => 'cme', 'Migut.B01625' => 'egut', 'Migut.B01915' => 'egut', 'Migut.F01721' => 'egut', 'Migut.J00314' => 'egut', 'MSTRG.20742' => 'ama', 'MSTRG.8134' => 'ama', 'Nitab4.5_0000096g0010' => 'nta', 'Nitab4.5_0000202g0030' => 'nta', 'Nitab4.5_0000216g0370' => 'nta', 'Nitab4.5_0000457g0230' => 'nta', 'Nitab4.5_0001702g0170' => 'nta', 'Nitab4.5_0003607g0010' => 'nta', 'Nitab4.5_0004917g0020' => 'nta', 'Nitab4.5_0007059g0010' => 'nta', 'Nitab4.5_0007184g0010' => 'nta', 'Nitab4.5_0007346g0020' => 'nta', 'Nn1g00410' => 'nnu', 'Nn1g01252' => 'nnu', 'Nn2g11168' => 'nnu', 'Nn2g13403' => 'nnu', 'Nn2g13760' => 'nnu', 'Nn4g26380' => 'nnu', 'Oeu000806.2' => 'oeu', 'Oeu005788.1' => 'oeu', 'Oeu006900.3' => 'oeu', 'Oeu007797.1' => 'oeu', 'Oeu011932.1' => 'oeu', 'Oeu022739.1' => 'oeu', 'Oeu037918.1' => 'oeu', 'Oeu055490.2' => 'oeu', 'Os01g0844400' => 'osa', 'Os02g0819100' => 'osa', 'Os03g0804300' => 'osa', 'Os05g0458000' => 'osa', 'Os07g0467800' => 'osa', 'Os12g0602200' => 'osa', 'Peaxi162Scf00013g03444' => 'pax', 'Peaxi162Scf00094g01120' => 'pax', 'Peaxi162Scf00191g01211' => 'pax', 'Peaxi162Scf00238g01110' => 'pax', 'Peaxi162Scf00330g00719' => 'pax', 'Peaxi162Scf00627g00018' => 'pax', 'PGR031G2686' => 'pgr', 'PGR042G0809' => 'pgr', 'PGR142G0193' => 'pgr', 'PGSC0003DMG400011066' => 'stu', 'PGSC0003DMG400012041' => 'stu', 'PGSC0003DMG400013678' => 'stu', 'PGSC0003DMG400023477' => 'stu', 'PGSC0003DMG400025956' => 'stu', 'PGSC0003DMG401019151' => 'stu', 'Phvul.006G116400' => 'pvu', 'Phvul.007G097300' => 'pvu', 'Phvul.010G015000' => 'pvu', 'Phvul.010G083900' => 'pvu', 'Potri.001G117100' => 'ptr', 'Potri.002G147300' => 'ptr', 'Potri.003G115600' => 'ptr', 'Potri.006G087400' => 'ptr', 'Potri.010G226100' => 'ptr', 'Potri.014G069200' => 'ptr', 'Potri.014G104000' => 'ptr', 'Potri.016G100200' => 'ptr', 'Pp3c10_20450' => 'ppa', 'Pp3c1_42400' => 'ppa', 'Pp3c3_24390' => 'ppa', 'Pp3c3_2860' => 'ppa', 'PRCOL_00003193' => 'pco', 'Prupe.2G144500' => 'ppe', 'Prupe.2G195700' => 'ppe', 'Prupe.2G209800' => 'ppe', 'Prupe.5G080000' => 'ppe', 'Prupe.6G257900' => 'ppe', 'Psat3g001160' => 'psa', 'Psat6g181880' => 'psa', 'Psat7g233720' => 'psa', 'PSO063G7587' => 'pso', 'PSO339G2145' => 'pso', 'PSO339G3369' => 'pso', 'PSO478G2747' => 'pso', 'PSO513G0140' => 'pso', 'PSO782G1614' => 'pso', 'PSO782G4889' => 'pso', 'PSO782G5485' => 'pso', 'PSO801G0241' => 'pso', 'QL07p048854' => 'qlo', 'QL08p046745' => 'qlo', 'QL08p052606' => 'qlo', 'QL08p053414' => 'qlo', 'QL08p054868' => 'qlo', 'RcHm_v2.0_Chr1g0350251' => 'rch', 'RcHm_v2.0_Chr1g0360851' => 'rch', 'RcHm_v2.0_Chr1g0362791' => 'rch', 'RcHm_v2.0_Chr3g0466281' => 'rch', 'RcHm_v2.0_Chr7g0201481' => 'rch', 'Rhsim01G0148600' => 'rsi', 'Rhsim05G0194400' => 'rsi', 'Rhsim07G0000700' => 'rsi', 'Rhsim07G0000800' => 'rsi', 'Rhsim07G0027900' => 'rsi', 'Rhsim09G0149500' => 'rsi', 'RhsimUnG0186900' => 'rsi', 'Sabra01G0089900' => 'sbr', 'Sabra02G0114700' => 'sbr', 'Sabra02G0116300' => 'sbr', 'Sabra03G0080100' => 'sbr', 'Sabra08G0024300' => 'sbr', 'Sabra10G0174300' => 'sbr', 'Sabra14G0048900' => 'sbr', 'Sabra14G0076500' => 'sbr', 'SalBow5G2513' => 'sbo', 'Sc01g0002300' => 'sci', 'Sc01g0004450' => 'sci', 'Sc06g0001680' => 'sci', 'Sc23g0003580' => 'sci', 'Sed0000913' => 'sed', 'Sed0001655' => 'sed', 'Sed0007745' => 'sed', 'Sed0010951' => 'sed', 'Sed0017599' => 'sed', 'Sed0021405' => 'sed', 'Sed0022810' => 'sed', 'SEGI_07099' => 'sgi', 'SEGI_11931' => 'sgi', 'SEGI_13187' => 'sgi', 'SEGI_29958' => 'sgi', 'SEGI_36351' => 'sgi', 'SGA_v2.0_scaffold126G33770' => 'sas', 'SGA_v2.0_scaffold153G37003' => 'sas', 'SGA_v2.0_scaffold2G01359' => 'sas', 'SGA_v2.0_scaffold5G03064' => 'sas', 'SGA_v2.0_scaffold95G28903' => 'sas', 'SHI12701' => 'shi', 'SHI26410' => 'shi', 'SHI38997' => 'shi', 'SHI53759' => 'shi', 'SHI53886' => 'shi', 'SHI54714' => 'shi', 'SMO011G0041' => 'smo', 'SMO146G0251' => 'smo', 'SMO160G0004' => 'smo', 'SMO174G0057' => 'smo', 'SMO244G0089' => 'smo', 'SMO296G0011' => 'smo', 'Solyc01g091280.3' => 'sly', 'Solyc05g047610.3' => 'sly', 'Solyc05g047640.3' => 'sly', 'Solyc05g055630.3' => 'sly', 'Solyc10g018160.2' => 'sly', 'Solyc10g084820.2' => 'sly', 'Solyc10g086565.2' => 'sly', 'Sopen01g037030' => 'spe', 'Sopen05g027920' => 'spe', 'Sopen05g034070' => 'spe', 'Sopen10g007260' => 'spe', 'Sopen10g034260' => 'spe', 'Sopen10g035950' => 'spe', 'Sp3g07710' => 'spa', 'Sp4g27420' => 'spa', 'Sp5g02450' => 'spa', 'Sp6g01280' => 'spa', 'Sp6g38480' => 'spa', 'Sp7g20780' => 'spa', 'TAR374G1413' => 'tar', 'TAR623G1777' => 'tar', 'TAR629G2370' => 'tar', 'TAR633G1759' => 'tar', 'TAR636G3387' => 'tar', 'THA.LOC104802447' => 'tha', 'THA.LOC104813916' => 'tha', 'THA.LOC104816423' => 'tha', 'THA.LOC104817246' => 'tha', 'THA.LOC104825895' => 'tha', 'Thecc.01G335200' => 'tca', 'Thecc.01G377400' => 'tca', 'Thecc.03G262200' => 'tca', 'Thecc.05G036800' => 'tca', 'Thecc.10G080500' => 'tca', 'Thecc.10G080800' => 'tca', 'Thhalv10001560m.g' => 'esa', 'Thhalv10006120m.g' => 'esa', 'Thhalv10014375m.g' => 'esa', 'Thhalv10021264m.g' => 'esa', 'Thhalv10028856m.g' => 'esa', 'TPR.G1914' => 'tpr', 'TPR.G4757' => 'tpr', 'TPR.G5595' => 'tpr', 'TWI14G0952' => 'twi', 'TWI14G1307' => 'twi', 'TWI38G2143' => 'twi', 'TWI59G0826' => 'twi', 'TWI77G0527' => 'twi', 'TWI81G0150' => 'twi', 'unitig_21.g21018' => 'ugi', 'unitig_26.g9725' => 'ugi', 'unitig_744.g24653' => 'ugi', 'unitig_749.g13778' => 'ugi', 'unitig_899.g15035' => 'ugi', 'vmacro04296' => 'vma', 'vmacro04852' => 'vma', 'vmacro13404' => 'vma', 'vmacro20169' => 'vma', 'vmacro21014' => 'vma', 'VMungo0331G0237' => 'vmu', 'VMungo0331G0706' => 'vmu', 'VMungo0331G1361' => 'vmu', 'VMungo0331G1489' => 'vmu', 'VMungo0540G1037' => 'vmu', 'VMungo0720G2487' => 'vmu', 'VMungo0720G2721' => 'vmu', 'Zm00001eb086860' => 'zma', 'Zm00001eb104760' => 'zma', 'Zm00001eb148220' => 'zma', 'Zm00001eb259030' => 'zma', 'Zm00001eb289590' => 'zma', 'Zm00001eb420150' => 'zma' ), 'gf_id' => 'HOM05D000968', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000968' ), 'data_identifier' => 'HOM05D000968', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000968', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p31690' => 'bna', 'A03p36040' => 'bna', 'A03p53730' => 'bna', 'A04p01410' => 'bna', 'A05p05420' => 'bna', 'A05p39630' => 'bna', 'A05p39640' => 'bna', 'A09p00970' => 'bna', 'A09p53060' => 'bna', 'A10p31890' => 'bna', 'Aa31LG10G15040' => 'aar', 'Aa31LG1G21090' => 'aar', 'Aa31LG1G26900' => 'aar', 'Aa31LG3G1820' => 'aar', 'Aa31LG5G1100' => 'aar', 'Aa31LG6G4740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2265' => 'aag', 'Actinidia07998' => 'ach', 'Actinidia11266' => 'ach', 'Actinidia12682' => 'ach', 'Actinidia26479' => 'ach', 'Actinidia31406' => 'ach', 'Actinidia32437' => 'ach', 'Actinidia38862' => 'ach', 'Ah.05g174230' => 'amhyb', 'Ah.05g179070' => 'amhyb', 'Ah.05g179090' => 'amhyb', 'Ah.12g059950' => 'amhyb', 'AL3G20480' => 'aly', 'AL4G44520' => 'aly', 'AL5G43110' => 'aly', 'AL6G13890' => 'aly', 'AL6G52620' => 'aly', 'AL7G30830' => 'aly', 'Aqoxy1G00899' => 'aox', 'Aqoxy5G04333' => 'aox', 'Aqoxy7G00641' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3IZ0NN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4EF6AW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W9P8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79GA3M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C43NQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFCU6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G95YVJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCHK29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LU1UG8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX91RN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGB4B1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8DA0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9H7JI' => 'arhy', 'AT3G09320' => 'ath', 'AT3G60800' => 'ath', 'AT4G00840' => 'ath', 'AT4G22750' => 'ath', 'AT5G04270' => 'ath', 'ATR0090G003' => 'atr', 'ATR0559G349' => 'atr', 'ATR0680G261' => 'atr', 'ATR0810G048' => 'atr', 'Atru.chr12.831' => 'acertr', 'Atru.chr5.303' => 'acertr', 'Atru.chr5.748' => 'acertr', 'Atru.chr8.1999' => 'acertr', 'Atru.chr9.1436' => 'acertr', 'AUR62004211' => 'cqu', 'AUR62004548' => 'cqu', 'AUR62013637' => 'cqu', 'AUR62022662' => 'cqu', 'AUR62025777' => 'cqu', 'AUR62042386' => 'cqu', 'BcaB01g02310' => 'bca', 'BcaB01g06062' => 'bca', 'BcaB02g08975' => 'bca', 'BcaB02g08980' => 'bca', 'BcaC01g04228' => 'bca', 'BcaC01g06830' => 'bca', 'BcaC02g10186' => 'bca', 'BcaC02g12214' => 'bca', 'BcaC04g24101' => 'bca', 'BcaC05g29520' => 'bca', 'BcaC05g29661' => 'bca', 'BcaC06g32130' => 'bca', 'BcaC06g32131' => 'bca', 'BcaC07g40601' => 'bca', 'BcaC07g42641' => 'bca', 'BcaNung01038' => 'bca', 'BcaNung01676' => 'bca', 'BcaNung02480' => 'bca', 'BcaNung07376' => 'bca', 'BolC3t16146H' => 'bol', 'BolC3t16637H' => 'bol', 'BolC4t22257H' => 'bol', 'BolC4t24728H' => 'bol', 'BolC5t34517H' => 'bol', 'BolC7t45703H' => 'bol', 'BolC8t51166H' => 'bol', 'BolC9t53038H' => 'bol', 'BolC9t60000H' => 'bol', 'BraA01t01345Z' => 'bra', 'BraA01t01346Z' => 'bra', 'BraA01t01348Z' => 'bra', 'BraA03t12347Z' => 'bra', 'BraA03t12775Z' => 'bra', 'BraA03t14439Z' => 'bra', 'BraA04t15860Z' => 'bra', 'BraA05t19511Z' => 'bra', 'BraA05t22746Z' => 'bra', 'BraA09t35767Z' => 'bra', 'BraA09t40732Z' => 'bra', 'BraA10t45233Z' => 'bra', 'C03p38720' => 'bna', 'C03p43680' => 'bna', 'C04p06350' => 'bna', 'C04p31800' => 'bna', 'C05p58680' => 'bna', 'C07p52110' => 'bna', 'C08p35760' => 'bna', 'C09p01050' => 'bna', 'C09p72600' => 'bna', 'CAN.G106.2' => 'can', 'CAN.G1482.1' => 'can', 'CAN.G324.12' => 'can', 'CAN.G388.20' => 'can', 'CAN.G412.7' => 'can', 'CAN.G694.32' => 'can', 'CAN.G92.12' => 'can', 'CANSAT11G2353' => 'cansat', 'CANSAT21G1398' => 'cansat', 'CANSAT56G2456' => 'cansat', 'CANSAT56G3031' => 'cansat', 'CANSAT56G4539' => 'cansat', 'CARHR083680' => 'chi', 'CARHR171190' => 'chi', 'CARHR209010' => 'chi', 'CARHR229680' => 'chi', 'CARHR249490' => 'chi', 'Carub.0003s0844' => 'cru', 'Carub.0005s2755' => 'cru', 'Carub.0006s0322' => 'cru', 'Carub.0006s3586' => 'cru', 'Carub.0007s1855' => 'cru', 'Ca_07808_v3' => 'car', 'Ca_09535_v3' => 'car', 'Ca_10548_v3' => 'car', 'Ca_19913_v3' => 'car', 'Ca_19916_v3' => 'car', 'Ca_19975_v3' => 'car', 'CBR_g22876' => 'cbr', 'CBR_g22879' => 'cbr', 'CBR_g38491' => 'cbr', 'CBR_g54185' => 'cbr', 'CBR_g54190' => 'cbr', 'Cc02_g11020' => 'ccan', 'Cc02_g23920' => 'ccan', 'Cc02_g39860' => 'ccan', 'Cc02_g39870' => 'ccan', 'Cc03_g06760' => 'ccan', 'Cc06_g02450' => 'ccan', 'Cc09_g09450' => 'ccan', 'CDE02G1959' => 'cde', 'CDE04G0600' => 'cde', 'CDE07G1996' => 'cde', 'CDE07G2078' => 'cde', 'CDE11G0611' => 'cde', 'Cfa001683' => 'cfa', 'Cfa001734' => 'cfa', 'Cfa001737' => 'cfa', 'Cfa003751' => 'cfa', 'Cfa012019' => 'cfa', 'Cfa017353' => 'cfa', 'Cfa017732' => 'cfa', 'Cfa022464' => 'cfa', 'Ciclev10012400m.g' => 'ccl', 'Ciclev10021242m.g' => 'ccl', 'Ciclev10021302m.g' => 'ccl', 'Ciclev10021463m.g' => 'ccl', 'Ciclev10032359m.g' => 'ccl', 'CiPaw.01G081000' => 'cil', 'CiPaw.01G262500' => 'cil', 'CiPaw.01G269800' => 'cil', 'CiPaw.02G168400' => 'cil', 'CiPaw.05G119500' => 'cil', 'CiPaw.11G147300' => 'cil', 'ClCG01G003630' => 'cla', 'ClCG05G000510' => 'cla', 'ClCG05G002300' => 'cla', 'ClCG08G007650' => 'cla', 'ClCG10G021250' => 'cla', 'COL.COLO4_06218' => 'col', 'COL.COLO4_12538' => 'col', 'COL.COLO4_14775' => 'col', 'COL.COLO4_23875' => 'col', 'Cpa.g.sc141.16' => 'cpa', 'Cpa.g.sc169.16' => 'cpa', 'Cpa.g.sc244.4' => 'cpa', 'Cpa.g.sc244.5' => 'cpa', 'Cpa.g.sc29.87' => 'cpa', 'Cpa.g.sc53.115' => 'cpa', 'Cre03.g207502' => 'cre', 'Cre06.g277000' => 'cre', 'Cre09.g394050' => 'cre', 'CsaV3_3G007680' => 'csa', 'CsaV3_3G009710' => 'csa', 'CsaV3_3G034790' => 'csa', 'CsaV3_5G003750' => 'csa', 'CsaV3_6G036620' => 'csa', 'CSS0002288' => 'camsi', 'CSS0011250' => 'camsi', 'CSS0021619' => 'camsi', 'CSS0046701' => 'camsi', 'DCAR_006420' => 'dca', 'DCAR_006865' => 'dca', 'DCAR_008558' => 'dca', 'DCAR_028754' => 'dca', 'DCAR_028755' => 'dca', 'Dinv31218' => 'din', 'Dinv32371' => 'din', 'Dinv34250' => 'din', 'Dinv37156' => 'din', 'Dinv43704' => 'din', 'Duzib093G1811' => 'dzi', 'Duzib106G1622' => 'dzi', 'Duzib114G0504' => 'dzi', 'Duzib128G0338' => 'dzi', 'Duzib128G1577' => 'dzi', 'Duzib133G0104' => 'dzi', 'Duzib133G1080' => 'dzi', 'Duzib138G0324' => 'dzi', 'Duzib138G0394' => 'dzi', 'Duzib205G0122' => 'dzi', 'Duzib268G1020' => 'dzi', 'Duzib268G1359' => 'dzi', 'ECA232G3929' => 'eca', 'ECA236G2210' => 'eca', 'ECA236G2287' => 'eca', 'ECA240G4568' => 'eca', 'ECA247G0894' => 'eca', 'EL10Ac1g00200' => 'bvu', 'EL10Ac1g00886' => 'bvu', 'EL10As1g23091' => 'bvu', 'EL10As1g23092' => 'bvu', 'Eucgr.A01284' => 'egr', 'Eucgr.A01285' => 'egr', 'Eucgr.D02456' => 'egr', 'Eucgr.E00018' => 'egr', 'Eucgr.E01439' => 'egr', 'Eucgr.G02859' => 'egr', 'FAN01G0168' => 'fan', 'FAN01G0453' => 'fan', 'FAN01G2761' => 'fan', 'FAN02G1239' => 'fan', 'FAN03G0645' => 'fan', 'FAN03G2707' => 'fan', 'FAN03G2978' => 'fan', 'FAN04G0227' => 'fan', 'FAN06G0091' => 'fan', 'FAN06G1418' => 'fan', 'FAN06G1512' => 'fan', 'FAN06G1986' => 'fan', 'FAN06G2905' => 'fan', 'FAN06G4325' => 'fan', 'FAN08G0033' => 'fan', 'FAN09G0642' => 'fan', 'FAN10G1763' => 'fan', 'FAN10G2026' => 'fan', 'FAN10G2513' => 'fan', 'FAN10G3402' => 'fan', 'FAN10G3564' => 'fan', 'FAN10G3987' => 'fan', 'FAN13G1490' => 'fan', 'FAN14G5857' => 'fan', 'FAN18G1188' => 'fan', 'FvH4_5g00750' => 'fve', 'FvH4_6g13410' => 'fve', 'FvH4_7g11740' => 'fve', 'FvH4_7g17410' => 'fve', 'FvH4_7g18860' => 'fve', 'Glyma.01G099100' => 'gma', 'Glyma.01G142300' => 'gma', 'Glyma.03G025500' => 'gma', 'Glyma.03G069700' => 'gma', 'Glyma.03G260000' => 'gma', 'Glyma.09G269800' => 'gma', 'Glyma.10G208700' => 'gma', 'Glyma.18G220400' => 'gma', 'Glyma.20G182000' => 'gma', 'Gohir.A01G221726' => 'ghi', 'Gohir.A07G134600' => 'ghi', 'Gohir.A07G146000' => 'ghi', 'Gohir.A08G173900' => 'ghi', 'Gohir.A09G194900' => 'ghi', 'Gohir.A10G204100' => 'ghi', 'Gohir.A11G080600' => 'ghi', 'Gohir.A11G327500' => 'ghi', 'Gohir.A12G101800' => 'ghi', 'Gohir.D01G211200' => 'ghi', 'Gohir.D07G139200' => 'ghi', 'Gohir.D07G152100' => 'ghi', 'Gohir.D08G192600' => 'ghi', 'Gohir.D09G189200' => 'ghi', 'Gohir.D10G212000' => 'ghi', 'Gohir.D11G085200' => 'ghi', 'Gohir.D11G346400' => 'ghi', 'Gohir.D12G104800' => 'ghi', 'Gorai.001G151300' => 'gra', 'Gorai.001G174100' => 'gra', 'Gorai.002G257000' => 'gra', 'Gorai.004G202600' => 'gra', 'Gorai.007G090900' => 'gra', 'Gorai.007G376700' => 'gra', 'Gorai.008G114100' => 'gra', 'Gorai.011G237900' => 'gra', 'GSVIVG01005450001' => 'vvi', 'GSVIVG01016232001' => 'vvi', 'GSVIVG01026157001' => 'vvi', 'GSVIVG01027419001' => 'vvi', 'GSVIVG01027631001' => 'vvi', 'GSVIVG01034143001' => 'vvi', 'HanXRQChr03g0093921' => 'han', 'HanXRQChr04g0120001' => 'han', 'HanXRQChr04g0122561' => 'han', 'HanXRQChr09g0246851' => 'han', 'HanXRQChr10g0293311' => 'han', 'HanXRQChr13g0425231' => 'han', 'HanXRQChr16g0532571' => 'han', 'Haze_09050' => 'cav', 'Haze_15715' => 'cav', 'Haze_15716' => 'cav', 'Haze_16803' => 'cav', 'Haze_16850' => 'cav', 'Hma1.2p1_0301F.1_g118655' => 'hma', 'Hma1.2p1_0309F.1_g120590' => 'hma', 'Hma1.2p1_0936F.1_g238900' => 'hma', 'Hma1.2p1_3552F.1_g336740' => 'hma', 'HPP92_003520' => 'vpl', 'HPP92_006628' => 'vpl', 'HPP92_006645' => 'vpl', 'HPP92_014669' => 'vpl', 'HPP92_015077' => 'vpl', 'Hund16742' => 'sun', 'Hund17022' => 'sun', 'Lalb_Chr02g0152131' => 'lal', 'Lalb_Chr05g0225371' => 'lal', 'Lalb_Chr07g0189841' => 'lal', 'Lalb_Chr07g0192961' => 'lal', 'Lalb_Chr12g0208221' => 'lal', 'Lalb_Chr13g0291211' => 'lal', 'Lalb_Chr13g0291781' => 'lal', 'Lalb_Chr18g0044651' => 'lal', 'Lalb_Chr21g0313731' => 'lal', 'Lj1g0022533' => 'lja', 'Lj2A18T50' => 'lonja', 'Lj2A92G93' => 'lonja', 'Lj3A965T73' => 'lonja', 'Lj3g0000673' => 'lja', 'Lj3g0002666' => 'lja', 'Lj4g0016985' => 'lja', 'Lj5g0003625' => 'lja', 'Lj7A529G36' => 'lonja', 'Lj9A569T49' => 'lonja', 'Lj9A604T63' => 'lonja', 'Lsat_1_v5_gn_3_132060' => 'lsa', 'Lsat_1_v5_gn_4_68941' => 'lsa', 'Lsat_1_v5_gn_5_95580' => 'lsa', 'Lsat_1_v5_gn_7_161' => 'lsa', 'Lsat_1_v5_gn_7_7041' => 'lsa', 'Lsat_1_v5_gn_9_33481' => 'lsa', 'Lsat_1_v5_gn_9_68260' => 'lsa', 'Manes.01G073100' => 'mes', 'Manes.01G266300' => 'mes', 'Manes.02G033300' => 'mes', 'Manes.05G017900' => 'mes', 'Manes.05G046100' => 'mes', 'Manes.08G080900' => 'mes', 'Manes.10G049400' => 'mes', 'Mapoly0009s0186' => 'mpo', 'Mapoly0036s0118' => 'mpo', 'Mapoly0101s0046' => 'mpo', 'MBI04_g30218_MAGBIO' => 'mbi', 'MBI04_g35564_MAGBIO' => 'mbi', 'MBI12_g34011_MAGBIO' => 'mbi', 'MBI14_g04655_MAGBIO' => 'mbi', 'MCO07G653' => 'mco', 'MCO10G173' => 'mco', 'MD01G1087100' => 'mdo', 'MD01G1104200' => 'mdo', 'MD02G1205100' => 'mdo', 'MD04G1079200' => 'mdo', 'MD04G1131400' => 'mdo', 'MD07G1121600' => 'mdo', 'MD07G1157300' => 'mdo', 'MD07G1171000' => 'mdo', 'MD12G1144500' => 'mdo', 'Medtr1g094610' => 'mtr', 'Medtr4g021795' => 'mtr', 'Medtr4g023760' => 'mtr', 'Medtr7g118050' => 'mtr', 'MELO3C005582.2' => 'cme', 'MELO3C005989.2' => 'cme', 'MELO3C006192.2' => 'cme', 'MELO3C009248.2' => 'cme', 'MELO3C019817.2' => 'cme', 'Migut.B01625' => 'egut', 'Migut.B01915' => 'egut', 'Migut.F01721' => 'egut', 'Migut.J00314' => 'egut', 'MSTRG.20742' => 'ama', 'MSTRG.8134' => 'ama', 'Nitab4.5_0000096g0010' => 'nta', 'Nitab4.5_0000202g0030' => 'nta', 'Nitab4.5_0000216g0370' => 'nta', 'Nitab4.5_0000457g0230' => 'nta', 'Nitab4.5_0001702g0170' => 'nta', 'Nitab4.5_0003607g0010' => 'nta', 'Nitab4.5_0004917g0020' => 'nta', 'Nitab4.5_0007059g0010' => 'nta', 'Nitab4.5_0007184g0010' => 'nta', 'Nitab4.5_0007346g0020' => 'nta', 'Nn1g00410' => 'nnu', 'Nn1g01252' => 'nnu', 'Nn2g11168' => 'nnu', 'Nn2g13403' => 'nnu', 'Nn2g13760' => 'nnu', 'Nn4g26380' => 'nnu', 'Oeu000806.2' => 'oeu', 'Oeu005788.1' => 'oeu', 'Oeu006900.3' => 'oeu', 'Oeu007797.1' => 'oeu', 'Oeu011932.1' => 'oeu', 'Oeu022739.1' => 'oeu', 'Oeu037918.1' => 'oeu', 'Oeu055490.2' => 'oeu', 'Os01g0844400' => 'osa', 'Os02g0819100' => 'osa', 'Os03g0804300' => 'osa', 'Os05g0458000' => 'osa', 'Os07g0467800' => 'osa', 'Os12g0602200' => 'osa', 'Peaxi162Scf00013g03444' => 'pax', 'Peaxi162Scf00094g01120' => 'pax', 'Peaxi162Scf00191g01211' => 'pax', 'Peaxi162Scf00238g01110' => 'pax', 'Peaxi162Scf00330g00719' => 'pax', 'Peaxi162Scf00627g00018' => 'pax', 'PGR031G2686' => 'pgr', 'PGR042G0809' => 'pgr', 'PGR142G0193' => 'pgr', 'PGSC0003DMG400011066' => 'stu', 'PGSC0003DMG400012041' => 'stu', 'PGSC0003DMG400013678' => 'stu', 'PGSC0003DMG400023477' => 'stu', 'PGSC0003DMG400025956' => 'stu', 'PGSC0003DMG401019151' => 'stu', 'Phvul.006G116400' => 'pvu', 'Phvul.007G097300' => 'pvu', 'Phvul.010G015000' => 'pvu', 'Phvul.010G083900' => 'pvu', 'Potri.001G117100' => 'ptr', 'Potri.002G147300' => 'ptr', 'Potri.003G115600' => 'ptr', 'Potri.006G087400' => 'ptr', 'Potri.010G226100' => 'ptr', 'Potri.014G069200' => 'ptr', 'Potri.014G104000' => 'ptr', 'Potri.016G100200' => 'ptr', 'Pp3c10_20450' => 'ppa', 'Pp3c1_42400' => 'ppa', 'Pp3c3_24390' => 'ppa', 'Pp3c3_2860' => 'ppa', 'PRCOL_00003193' => 'pco', 'Prupe.2G144500' => 'ppe', 'Prupe.2G195700' => 'ppe', 'Prupe.2G209800' => 'ppe', 'Prupe.5G080000' => 'ppe', 'Prupe.6G257900' => 'ppe', 'Psat3g001160' => 'psa', 'Psat6g181880' => 'psa', 'Psat7g233720' => 'psa', 'PSO063G7587' => 'pso', 'PSO339G2145' => 'pso', 'PSO339G3369' => 'pso', 'PSO478G2747' => 'pso', 'PSO513G0140' => 'pso', 'PSO782G1614' => 'pso', 'PSO782G4889' => 'pso', 'PSO782G5485' => 'pso', 'PSO801G0241' => 'pso', 'QL07p048854' => 'qlo', 'QL08p046745' => 'qlo', 'QL08p052606' => 'qlo', 'QL08p053414' => 'qlo', 'QL08p054868' => 'qlo', 'RcHm_v2.0_Chr1g0350251' => 'rch', 'RcHm_v2.0_Chr1g0360851' => 'rch', 'RcHm_v2.0_Chr1g0362791' => 'rch', 'RcHm_v2.0_Chr3g0466281' => 'rch', 'RcHm_v2.0_Chr7g0201481' => 'rch', 'Rhsim01G0148600' => 'rsi', 'Rhsim05G0194400' => 'rsi', 'Rhsim07G0000700' => 'rsi', 'Rhsim07G0000800' => 'rsi', 'Rhsim07G0027900' => 'rsi', 'Rhsim09G0149500' => 'rsi', 'RhsimUnG0186900' => 'rsi', 'Sabra01G0089900' => 'sbr', 'Sabra02G0114700' => 'sbr', 'Sabra02G0116300' => 'sbr', 'Sabra03G0080100' => 'sbr', 'Sabra08G0024300' => 'sbr', 'Sabra10G0174300' => 'sbr', 'Sabra14G0048900' => 'sbr', 'Sabra14G0076500' => 'sbr', 'SalBow5G2513' => 'sbo', 'Sc01g0002300' => 'sci', 'Sc01g0004450' => 'sci', 'Sc06g0001680' => 'sci', 'Sc23g0003580' => 'sci', 'Sed0000913' => 'sed', 'Sed0001655' => 'sed', 'Sed0007745' => 'sed', 'Sed0010951' => 'sed', 'Sed0017599' => 'sed', 'Sed0021405' => 'sed', 'Sed0022810' => 'sed', 'SEGI_07099' => 'sgi', 'SEGI_11931' => 'sgi', 'SEGI_13187' => 'sgi', 'SEGI_29958' => 'sgi', 'SEGI_36351' => 'sgi', 'SGA_v2.0_scaffold126G33770' => 'sas', 'SGA_v2.0_scaffold153G37003' => 'sas', 'SGA_v2.0_scaffold2G01359' => 'sas', 'SGA_v2.0_scaffold5G03064' => 'sas', 'SGA_v2.0_scaffold95G28903' => 'sas', 'SHI12701' => 'shi', 'SHI26410' => 'shi', 'SHI38997' => 'shi', 'SHI53759' => 'shi', 'SHI53886' => 'shi', 'SHI54714' => 'shi', 'SMO011G0041' => 'smo', 'SMO146G0251' => 'smo', 'SMO160G0004' => 'smo', 'SMO174G0057' => 'smo', 'SMO244G0089' => 'smo', 'SMO296G0011' => 'smo', 'Solyc01g091280.3' => 'sly', 'Solyc05g047610.3' => 'sly', 'Solyc05g047640.3' => 'sly', 'Solyc05g055630.3' => 'sly', 'Solyc10g018160.2' => 'sly', 'Solyc10g084820.2' => 'sly', 'Solyc10g086565.2' => 'sly', 'Sopen01g037030' => 'spe', 'Sopen05g027920' => 'spe', 'Sopen05g034070' => 'spe', 'Sopen10g007260' => 'spe', 'Sopen10g034260' => 'spe', 'Sopen10g035950' => 'spe', 'Sp3g07710' => 'spa', 'Sp4g27420' => 'spa', 'Sp5g02450' => 'spa', 'Sp6g01280' => 'spa', 'Sp6g38480' => 'spa', 'Sp7g20780' => 'spa', 'TAR374G1413' => 'tar', 'TAR623G1777' => 'tar', 'TAR629G2370' => 'tar', 'TAR633G1759' => 'tar', 'TAR636G3387' => 'tar', 'THA.LOC104802447' => 'tha', 'THA.LOC104813916' => 'tha', 'THA.LOC104816423' => 'tha', 'THA.LOC104817246' => 'tha', 'THA.LOC104825895' => 'tha', 'Thecc.01G335200' => 'tca', 'Thecc.01G377400' => 'tca', 'Thecc.03G262200' => 'tca', 'Thecc.05G036800' => 'tca', 'Thecc.10G080500' => 'tca', 'Thecc.10G080800' => 'tca', 'Thhalv10001560m.g' => 'esa', 'Thhalv10006120m.g' => 'esa', 'Thhalv10014375m.g' => 'esa', 'Thhalv10021264m.g' => 'esa', 'Thhalv10028856m.g' => 'esa', 'TPR.G1914' => 'tpr', 'TPR.G4757' => 'tpr', 'TPR.G5595' => 'tpr', 'TWI14G0952' => 'twi', 'TWI14G1307' => 'twi', 'TWI38G2143' => 'twi', 'TWI59G0826' => 'twi', 'TWI77G0527' => 'twi', 'TWI81G0150' => 'twi', 'unitig_21.g21018' => 'ugi', 'unitig_26.g9725' => 'ugi', 'unitig_744.g24653' => 'ugi', 'unitig_749.g13778' => 'ugi', 'unitig_899.g15035' => 'ugi', 'vmacro04296' => 'vma', 'vmacro04852' => 'vma', 'vmacro13404' => 'vma', 'vmacro20169' => 'vma', 'vmacro21014' => 'vma', 'VMungo0331G0237' => 'vmu', 'VMungo0331G0706' => 'vmu', 'VMungo0331G1361' => 'vmu', 'VMungo0331G1489' => 'vmu', 'VMungo0540G1037' => 'vmu', 'VMungo0720G2487' => 'vmu', 'VMungo0720G2721' => 'vmu', 'Zm00001eb086860' => 'zma', 'Zm00001eb104760' => 'zma', 'Zm00001eb148220' => 'zma', 'Zm00001eb259030' => 'zma', 'Zm00001eb289590' => 'zma', 'Zm00001eb420150' => 'zma' ) $gf_id = 'HOM05D000968' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000968' ) $data_identifier = 'HOM05D000968' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 19, 'bol' => (int) 9, 'bra' => (int) 12, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 5, 'ccan' => (int) 7, 'cde' => (int) 5, 'cfa' => (int) 8, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 4, 'dca' => (int) 5, 'din' => (int) 5, 'dzi' => (int) 12, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 25, 'fve' => (int) 5, 'gma' => (int) 9, 'ghi' => (int) 18, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 7, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 5, 'sun' => (int) 2, 'lal' => (int) 9, 'lja' => (int) 5, 'lonja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 9, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 2, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 3, 'stu' => (int) 6, 'pvu' => (int) 4, 'ptr' => (int) 8, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 3, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 1, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 5, 'sas' => (int) 5, 'shi' => (int) 6, 'smo' => (int) 6, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 3, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420150' $species_info = array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ) $local_species = 'cav' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000968', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p31690' => 'bna', 'A03p36040' => 'bna', 'A03p53730' => 'bna', 'A04p01410' => 'bna', 'A05p05420' => 'bna', 'A05p39630' => 'bna', 'A05p39640' => 'bna', 'A09p00970' => 'bna', 'A09p53060' => 'bna', 'A10p31890' => 'bna', 'Aa31LG10G15040' => 'aar', 'Aa31LG1G21090' => 'aar', 'Aa31LG1G26900' => 'aar', 'Aa31LG3G1820' => 'aar', 'Aa31LG5G1100' => 'aar', 'Aa31LG6G4740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2265' => 'aag', 'Actinidia07998' => 'ach', 'Actinidia11266' => 'ach', 'Actinidia12682' => 'ach', 'Actinidia26479' => 'ach', 'Actinidia31406' => 'ach', 'Actinidia32437' => 'ach', 'Actinidia38862' => 'ach', 'Ah.05g174230' => 'amhyb', 'Ah.05g179070' => 'amhyb', 'Ah.05g179090' => 'amhyb', 'Ah.12g059950' => 'amhyb', 'AL3G20480' => 'aly', 'AL4G44520' => 'aly', 'AL5G43110' => 'aly', 'AL6G13890' => 'aly', 'AL6G52620' => 'aly', 'AL7G30830' => 'aly', 'Aqoxy1G00899' => 'aox', 'Aqoxy5G04333' => 'aox', 'Aqoxy7G00641' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3IZ0NN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4EF6AW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W9P8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79GA3M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C43NQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFCU6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G95YVJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCHK29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LU1UG8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX91RN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGB4B1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8DA0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9H7JI' => 'arhy', 'AT3G09320' => 'ath', 'AT3G60800' => 'ath', 'AT4G00840' => 'ath', 'AT4G22750' => 'ath', 'AT5G04270' => 'ath', 'ATR0090G003' => 'atr', 'ATR0559G349' => 'atr', 'ATR0680G261' => 'atr', 'ATR0810G048' => 'atr', 'Atru.chr12.831' => 'acertr', 'Atru.chr5.303' => 'acertr', 'Atru.chr5.748' => 'acertr', 'Atru.chr8.1999' => 'acertr', 'Atru.chr9.1436' => 'acertr', 'AUR62004211' => 'cqu', 'AUR62004548' => 'cqu', 'AUR62013637' => 'cqu', 'AUR62022662' => 'cqu', 'AUR62025777' => 'cqu', 'AUR62042386' => 'cqu', 'BcaB01g02310' => 'bca', 'BcaB01g06062' => 'bca', 'BcaB02g08975' => 'bca', 'BcaB02g08980' => 'bca', 'BcaC01g04228' => 'bca', 'BcaC01g06830' => 'bca', 'BcaC02g10186' => 'bca', 'BcaC02g12214' => 'bca', 'BcaC04g24101' => 'bca', 'BcaC05g29520' => 'bca', 'BcaC05g29661' => 'bca', 'BcaC06g32130' => 'bca', 'BcaC06g32131' => 'bca', 'BcaC07g40601' => 'bca', 'BcaC07g42641' => 'bca', 'BcaNung01038' => 'bca', 'BcaNung01676' => 'bca', 'BcaNung02480' => 'bca', 'BcaNung07376' => 'bca', 'BolC3t16146H' => 'bol', 'BolC3t16637H' => 'bol', 'BolC4t22257H' => 'bol', 'BolC4t24728H' => 'bol', 'BolC5t34517H' => 'bol', 'BolC7t45703H' => 'bol', 'BolC8t51166H' => 'bol', 'BolC9t53038H' => 'bol', 'BolC9t60000H' => 'bol', 'BraA01t01345Z' => 'bra', 'BraA01t01346Z' => 'bra', 'BraA01t01348Z' => 'bra', 'BraA03t12347Z' => 'bra', 'BraA03t12775Z' => 'bra', 'BraA03t14439Z' => 'bra', 'BraA04t15860Z' => 'bra', 'BraA05t19511Z' => 'bra', 'BraA05t22746Z' => 'bra', 'BraA09t35767Z' => 'bra', 'BraA09t40732Z' => 'bra', 'BraA10t45233Z' => 'bra', 'C03p38720' => 'bna', 'C03p43680' => 'bna', 'C04p06350' => 'bna', 'C04p31800' => 'bna', 'C05p58680' => 'bna', 'C07p52110' => 'bna', 'C08p35760' => 'bna', 'C09p01050' => 'bna', 'C09p72600' => 'bna', 'CAN.G106.2' => 'can', 'CAN.G1482.1' => 'can', 'CAN.G324.12' => 'can', 'CAN.G388.20' => 'can', 'CAN.G412.7' => 'can', 'CAN.G694.32' => 'can', 'CAN.G92.12' => 'can', 'CANSAT11G2353' => 'cansat', 'CANSAT21G1398' => 'cansat', 'CANSAT56G2456' => 'cansat', 'CANSAT56G3031' => 'cansat', 'CANSAT56G4539' => 'cansat', 'CARHR083680' => 'chi', 'CARHR171190' => 'chi', 'CARHR209010' => 'chi', 'CARHR229680' => 'chi', 'CARHR249490' => 'chi', 'Carub.0003s0844' => 'cru', 'Carub.0005s2755' => 'cru', 'Carub.0006s0322' => 'cru', 'Carub.0006s3586' => 'cru', 'Carub.0007s1855' => 'cru', 'Ca_07808_v3' => 'car', 'Ca_09535_v3' => 'car', 'Ca_10548_v3' => 'car', 'Ca_19913_v3' => 'car', 'Ca_19916_v3' => 'car', 'Ca_19975_v3' => 'car', 'CBR_g22876' => 'cbr', 'CBR_g22879' => 'cbr', 'CBR_g38491' => 'cbr', 'CBR_g54185' => 'cbr', 'CBR_g54190' => 'cbr', 'Cc02_g11020' => 'ccan', 'Cc02_g23920' => 'ccan', 'Cc02_g39860' => 'ccan', 'Cc02_g39870' => 'ccan', 'Cc03_g06760' => 'ccan', 'Cc06_g02450' => 'ccan', 'Cc09_g09450' => 'ccan', 'CDE02G1959' => 'cde', 'CDE04G0600' => 'cde', 'CDE07G1996' => 'cde', 'CDE07G2078' => 'cde', 'CDE11G0611' => 'cde', 'Cfa001683' => 'cfa', 'Cfa001734' => 'cfa', 'Cfa001737' => 'cfa', 'Cfa003751' => 'cfa', 'Cfa012019' => 'cfa', 'Cfa017353' => 'cfa', 'Cfa017732' => 'cfa', 'Cfa022464' => 'cfa', 'Ciclev10012400m.g' => 'ccl', 'Ciclev10021242m.g' => 'ccl', 'Ciclev10021302m.g' => 'ccl', 'Ciclev10021463m.g' => 'ccl', 'Ciclev10032359m.g' => 'ccl', 'CiPaw.01G081000' => 'cil', 'CiPaw.01G262500' => 'cil', 'CiPaw.01G269800' => 'cil', 'CiPaw.02G168400' => 'cil', 'CiPaw.05G119500' => 'cil', 'CiPaw.11G147300' => 'cil', 'ClCG01G003630' => 'cla', 'ClCG05G000510' => 'cla', 'ClCG05G002300' => 'cla', 'ClCG08G007650' => 'cla', 'ClCG10G021250' => 'cla', 'COL.COLO4_06218' => 'col', 'COL.COLO4_12538' => 'col', 'COL.COLO4_14775' => 'col', 'COL.COLO4_23875' => 'col', 'Cpa.g.sc141.16' => 'cpa', 'Cpa.g.sc169.16' => 'cpa', 'Cpa.g.sc244.4' => 'cpa', 'Cpa.g.sc244.5' => 'cpa', 'Cpa.g.sc29.87' => 'cpa', 'Cpa.g.sc53.115' => 'cpa', 'Cre03.g207502' => 'cre', 'Cre06.g277000' => 'cre', 'Cre09.g394050' => 'cre', 'CsaV3_3G007680' => 'csa', 'CsaV3_3G009710' => 'csa', 'CsaV3_3G034790' => 'csa', 'CsaV3_5G003750' => 'csa', 'CsaV3_6G036620' => 'csa', 'CSS0002288' => 'camsi', 'CSS0011250' => 'camsi', 'CSS0021619' => 'camsi', 'CSS0046701' => 'camsi', 'DCAR_006420' => 'dca', 'DCAR_006865' => 'dca', 'DCAR_008558' => 'dca', 'DCAR_028754' => 'dca', 'DCAR_028755' => 'dca', 'Dinv31218' => 'din', 'Dinv32371' => 'din', 'Dinv34250' => 'din', 'Dinv37156' => 'din', 'Dinv43704' => 'din', 'Duzib093G1811' => 'dzi', 'Duzib106G1622' => 'dzi', 'Duzib114G0504' => 'dzi', 'Duzib128G0338' => 'dzi', 'Duzib128G1577' => 'dzi', 'Duzib133G0104' => 'dzi', 'Duzib133G1080' => 'dzi', 'Duzib138G0324' => 'dzi', 'Duzib138G0394' => 'dzi', 'Duzib205G0122' => 'dzi', 'Duzib268G1020' => 'dzi', 'Duzib268G1359' => 'dzi', 'ECA232G3929' => 'eca', 'ECA236G2210' => 'eca', 'ECA236G2287' => 'eca', 'ECA240G4568' => 'eca', 'ECA247G0894' => 'eca', 'EL10Ac1g00200' => 'bvu', 'EL10Ac1g00886' => 'bvu', 'EL10As1g23091' => 'bvu', 'EL10As1g23092' => 'bvu', 'Eucgr.A01284' => 'egr', 'Eucgr.A01285' => 'egr', 'Eucgr.D02456' => 'egr', 'Eucgr.E00018' => 'egr', 'Eucgr.E01439' => 'egr', 'Eucgr.G02859' => 'egr', 'FAN01G0168' => 'fan', 'FAN01G0453' => 'fan', 'FAN01G2761' => 'fan', 'FAN02G1239' => 'fan', 'FAN03G0645' => 'fan', 'FAN03G2707' => 'fan', 'FAN03G2978' => 'fan', 'FAN04G0227' => 'fan', 'FAN06G0091' => 'fan', 'FAN06G1418' => 'fan', 'FAN06G1512' => 'fan', 'FAN06G1986' => 'fan', 'FAN06G2905' => 'fan', 'FAN06G4325' => 'fan', 'FAN08G0033' => 'fan', 'FAN09G0642' => 'fan', 'FAN10G1763' => 'fan', 'FAN10G2026' => 'fan', 'FAN10G2513' => 'fan', 'FAN10G3402' => 'fan', 'FAN10G3564' => 'fan', 'FAN10G3987' => 'fan', 'FAN13G1490' => 'fan', 'FAN14G5857' => 'fan', 'FAN18G1188' => 'fan', 'FvH4_5g00750' => 'fve', 'FvH4_6g13410' => 'fve', 'FvH4_7g11740' => 'fve', 'FvH4_7g17410' => 'fve', 'FvH4_7g18860' => 'fve', 'Glyma.01G099100' => 'gma', 'Glyma.01G142300' => 'gma', 'Glyma.03G025500' => 'gma', 'Glyma.03G069700' => 'gma', 'Glyma.03G260000' => 'gma', 'Glyma.09G269800' => 'gma', 'Glyma.10G208700' => 'gma', 'Glyma.18G220400' => 'gma', 'Glyma.20G182000' => 'gma', 'Gohir.A01G221726' => 'ghi', 'Gohir.A07G134600' => 'ghi', 'Gohir.A07G146000' => 'ghi', 'Gohir.A08G173900' => 'ghi', 'Gohir.A09G194900' => 'ghi', 'Gohir.A10G204100' => 'ghi', 'Gohir.A11G080600' => 'ghi', 'Gohir.A11G327500' => 'ghi', 'Gohir.A12G101800' => 'ghi', 'Gohir.D01G211200' => 'ghi', 'Gohir.D07G139200' => 'ghi', 'Gohir.D07G152100' => 'ghi', 'Gohir.D08G192600' => 'ghi', 'Gohir.D09G189200' => 'ghi', 'Gohir.D10G212000' => 'ghi', 'Gohir.D11G085200' => 'ghi', 'Gohir.D11G346400' => 'ghi', 'Gohir.D12G104800' => 'ghi', 'Gorai.001G151300' => 'gra', 'Gorai.001G174100' => 'gra', 'Gorai.002G257000' => 'gra', 'Gorai.004G202600' => 'gra', 'Gorai.007G090900' => 'gra', 'Gorai.007G376700' => 'gra', 'Gorai.008G114100' => 'gra', 'Gorai.011G237900' => 'gra', 'GSVIVG01005450001' => 'vvi', 'GSVIVG01016232001' => 'vvi', 'GSVIVG01026157001' => 'vvi', 'GSVIVG01027419001' => 'vvi', 'GSVIVG01027631001' => 'vvi', 'GSVIVG01034143001' => 'vvi', 'HanXRQChr03g0093921' => 'han', 'HanXRQChr04g0120001' => 'han', 'HanXRQChr04g0122561' => 'han', 'HanXRQChr09g0246851' => 'han', 'HanXRQChr10g0293311' => 'han', 'HanXRQChr13g0425231' => 'han', 'HanXRQChr16g0532571' => 'han', 'Haze_09050' => 'cav', 'Haze_15715' => 'cav', 'Haze_15716' => 'cav', 'Haze_16803' => 'cav', 'Haze_16850' => 'cav', 'Hma1.2p1_0301F.1_g118655' => 'hma', 'Hma1.2p1_0309F.1_g120590' => 'hma', 'Hma1.2p1_0936F.1_g238900' => 'hma', 'Hma1.2p1_3552F.1_g336740' => 'hma', 'HPP92_003520' => 'vpl', 'HPP92_006628' => 'vpl', 'HPP92_006645' => 'vpl', 'HPP92_014669' => 'vpl', 'HPP92_015077' => 'vpl', 'Hund16742' => 'sun', 'Hund17022' => 'sun', 'Lalb_Chr02g0152131' => 'lal', 'Lalb_Chr05g0225371' => 'lal', 'Lalb_Chr07g0189841' => 'lal', 'Lalb_Chr07g0192961' => 'lal', 'Lalb_Chr12g0208221' => 'lal', 'Lalb_Chr13g0291211' => 'lal', 'Lalb_Chr13g0291781' => 'lal', 'Lalb_Chr18g0044651' => 'lal', 'Lalb_Chr21g0313731' => 'lal', 'Lj1g0022533' => 'lja', 'Lj2A18T50' => 'lonja', 'Lj2A92G93' => 'lonja', 'Lj3A965T73' => 'lonja', 'Lj3g0000673' => 'lja', 'Lj3g0002666' => 'lja', 'Lj4g0016985' => 'lja', 'Lj5g0003625' => 'lja', 'Lj7A529G36' => 'lonja', 'Lj9A569T49' => 'lonja', 'Lj9A604T63' => 'lonja', 'Lsat_1_v5_gn_3_132060' => 'lsa', 'Lsat_1_v5_gn_4_68941' => 'lsa', 'Lsat_1_v5_gn_5_95580' => 'lsa', 'Lsat_1_v5_gn_7_161' => 'lsa', 'Lsat_1_v5_gn_7_7041' => 'lsa', 'Lsat_1_v5_gn_9_33481' => 'lsa', 'Lsat_1_v5_gn_9_68260' => 'lsa', 'Manes.01G073100' => 'mes', 'Manes.01G266300' => 'mes', 'Manes.02G033300' => 'mes', 'Manes.05G017900' => 'mes', 'Manes.05G046100' => 'mes', 'Manes.08G080900' => 'mes', 'Manes.10G049400' => 'mes', 'Mapoly0009s0186' => 'mpo', 'Mapoly0036s0118' => 'mpo', 'Mapoly0101s0046' => 'mpo', 'MBI04_g30218_MAGBIO' => 'mbi', 'MBI04_g35564_MAGBIO' => 'mbi', 'MBI12_g34011_MAGBIO' => 'mbi', 'MBI14_g04655_MAGBIO' => 'mbi', 'MCO07G653' => 'mco', 'MCO10G173' => 'mco', 'MD01G1087100' => 'mdo', 'MD01G1104200' => 'mdo', 'MD02G1205100' => 'mdo', 'MD04G1079200' => 'mdo', 'MD04G1131400' => 'mdo', 'MD07G1121600' => 'mdo', 'MD07G1157300' => 'mdo', 'MD07G1171000' => 'mdo', 'MD12G1144500' => 'mdo', 'Medtr1g094610' => 'mtr', 'Medtr4g021795' => 'mtr', 'Medtr4g023760' => 'mtr', 'Medtr7g118050' => 'mtr', 'MELO3C005582.2' => 'cme', 'MELO3C005989.2' => 'cme', 'MELO3C006192.2' => 'cme', 'MELO3C009248.2' => 'cme', 'MELO3C019817.2' => 'cme', 'Migut.B01625' => 'egut', 'Migut.B01915' => 'egut', 'Migut.F01721' => 'egut', 'Migut.J00314' => 'egut', 'MSTRG.20742' => 'ama', 'MSTRG.8134' => 'ama', 'Nitab4.5_0000096g0010' => 'nta', 'Nitab4.5_0000202g0030' => 'nta', 'Nitab4.5_0000216g0370' => 'nta', 'Nitab4.5_0000457g0230' => 'nta', 'Nitab4.5_0001702g0170' => 'nta', 'Nitab4.5_0003607g0010' => 'nta', 'Nitab4.5_0004917g0020' => 'nta', 'Nitab4.5_0007059g0010' => 'nta', 'Nitab4.5_0007184g0010' => 'nta', 'Nitab4.5_0007346g0020' => 'nta', 'Nn1g00410' => 'nnu', 'Nn1g01252' => 'nnu', 'Nn2g11168' => 'nnu', 'Nn2g13403' => 'nnu', 'Nn2g13760' => 'nnu', 'Nn4g26380' => 'nnu', 'Oeu000806.2' => 'oeu', 'Oeu005788.1' => 'oeu', 'Oeu006900.3' => 'oeu', 'Oeu007797.1' => 'oeu', 'Oeu011932.1' => 'oeu', 'Oeu022739.1' => 'oeu', 'Oeu037918.1' => 'oeu', 'Oeu055490.2' => 'oeu', 'Os01g0844400' => 'osa', 'Os02g0819100' => 'osa', 'Os03g0804300' => 'osa', 'Os05g0458000' => 'osa', 'Os07g0467800' => 'osa', 'Os12g0602200' => 'osa', 'Peaxi162Scf00013g03444' => 'pax', 'Peaxi162Scf00094g01120' => 'pax', 'Peaxi162Scf00191g01211' => 'pax', 'Peaxi162Scf00238g01110' => 'pax', 'Peaxi162Scf00330g00719' => 'pax', 'Peaxi162Scf00627g00018' => 'pax', 'PGR031G2686' => 'pgr', 'PGR042G0809' => 'pgr', 'PGR142G0193' => 'pgr', 'PGSC0003DMG400011066' => 'stu', 'PGSC0003DMG400012041' => 'stu', 'PGSC0003DMG400013678' => 'stu', 'PGSC0003DMG400023477' => 'stu', 'PGSC0003DMG400025956' => 'stu', 'PGSC0003DMG401019151' => 'stu', 'Phvul.006G116400' => 'pvu', 'Phvul.007G097300' => 'pvu', 'Phvul.010G015000' => 'pvu', 'Phvul.010G083900' => 'pvu', 'Potri.001G117100' => 'ptr', 'Potri.002G147300' => 'ptr', 'Potri.003G115600' => 'ptr', 'Potri.006G087400' => 'ptr', 'Potri.010G226100' => 'ptr', 'Potri.014G069200' => 'ptr', 'Potri.014G104000' => 'ptr', 'Potri.016G100200' => 'ptr', 'Pp3c10_20450' => 'ppa', 'Pp3c1_42400' => 'ppa', 'Pp3c3_24390' => 'ppa', 'Pp3c3_2860' => 'ppa', 'PRCOL_00003193' => 'pco', 'Prupe.2G144500' => 'ppe', 'Prupe.2G195700' => 'ppe', 'Prupe.2G209800' => 'ppe', 'Prupe.5G080000' => 'ppe', 'Prupe.6G257900' => 'ppe', 'Psat3g001160' => 'psa', 'Psat6g181880' => 'psa', 'Psat7g233720' => 'psa', 'PSO063G7587' => 'pso', 'PSO339G2145' => 'pso', 'PSO339G3369' => 'pso', 'PSO478G2747' => 'pso', 'PSO513G0140' => 'pso', 'PSO782G1614' => 'pso', 'PSO782G4889' => 'pso', 'PSO782G5485' => 'pso', 'PSO801G0241' => 'pso', 'QL07p048854' => 'qlo', 'QL08p046745' => 'qlo', 'QL08p052606' => 'qlo', 'QL08p053414' => 'qlo', 'QL08p054868' => 'qlo', 'RcHm_v2.0_Chr1g0350251' => 'rch', 'RcHm_v2.0_Chr1g0360851' => 'rch', 'RcHm_v2.0_Chr1g0362791' => 'rch', 'RcHm_v2.0_Chr3g0466281' => 'rch', 'RcHm_v2.0_Chr7g0201481' => 'rch', 'Rhsim01G0148600' => 'rsi', 'Rhsim05G0194400' => 'rsi', 'Rhsim07G0000700' => 'rsi', 'Rhsim07G0000800' => 'rsi', 'Rhsim07G0027900' => 'rsi', 'Rhsim09G0149500' => 'rsi', 'RhsimUnG0186900' => 'rsi', 'Sabra01G0089900' => 'sbr', 'Sabra02G0114700' => 'sbr', 'Sabra02G0116300' => 'sbr', 'Sabra03G0080100' => 'sbr', 'Sabra08G0024300' => 'sbr', 'Sabra10G0174300' => 'sbr', 'Sabra14G0048900' => 'sbr', 'Sabra14G0076500' => 'sbr', 'SalBow5G2513' => 'sbo', 'Sc01g0002300' => 'sci', 'Sc01g0004450' => 'sci', 'Sc06g0001680' => 'sci', 'Sc23g0003580' => 'sci', 'Sed0000913' => 'sed', 'Sed0001655' => 'sed', 'Sed0007745' => 'sed', 'Sed0010951' => 'sed', 'Sed0017599' => 'sed', 'Sed0021405' => 'sed', 'Sed0022810' => 'sed', 'SEGI_07099' => 'sgi', 'SEGI_11931' => 'sgi', 'SEGI_13187' => 'sgi', 'SEGI_29958' => 'sgi', 'SEGI_36351' => 'sgi', 'SGA_v2.0_scaffold126G33770' => 'sas', 'SGA_v2.0_scaffold153G37003' => 'sas', 'SGA_v2.0_scaffold2G01359' => 'sas', 'SGA_v2.0_scaffold5G03064' => 'sas', 'SGA_v2.0_scaffold95G28903' => 'sas', 'SHI12701' => 'shi', 'SHI26410' => 'shi', 'SHI38997' => 'shi', 'SHI53759' => 'shi', 'SHI53886' => 'shi', 'SHI54714' => 'shi', 'SMO011G0041' => 'smo', 'SMO146G0251' => 'smo', 'SMO160G0004' => 'smo', 'SMO174G0057' => 'smo', 'SMO244G0089' => 'smo', 'SMO296G0011' => 'smo', 'Solyc01g091280.3' => 'sly', 'Solyc05g047610.3' => 'sly', 'Solyc05g047640.3' => 'sly', 'Solyc05g055630.3' => 'sly', 'Solyc10g018160.2' => 'sly', 'Solyc10g084820.2' => 'sly', 'Solyc10g086565.2' => 'sly', 'Sopen01g037030' => 'spe', 'Sopen05g027920' => 'spe', 'Sopen05g034070' => 'spe', 'Sopen10g007260' => 'spe', 'Sopen10g034260' => 'spe', 'Sopen10g035950' => 'spe', 'Sp3g07710' => 'spa', 'Sp4g27420' => 'spa', 'Sp5g02450' => 'spa', 'Sp6g01280' => 'spa', 'Sp6g38480' => 'spa', 'Sp7g20780' => 'spa', 'TAR374G1413' => 'tar', 'TAR623G1777' => 'tar', 'TAR629G2370' => 'tar', 'TAR633G1759' => 'tar', 'TAR636G3387' => 'tar', 'THA.LOC104802447' => 'tha', 'THA.LOC104813916' => 'tha', 'THA.LOC104816423' => 'tha', 'THA.LOC104817246' => 'tha', 'THA.LOC104825895' => 'tha', 'Thecc.01G335200' => 'tca', 'Thecc.01G377400' => 'tca', 'Thecc.03G262200' => 'tca', 'Thecc.05G036800' => 'tca', 'Thecc.10G080500' => 'tca', 'Thecc.10G080800' => 'tca', 'Thhalv10001560m.g' => 'esa', 'Thhalv10006120m.g' => 'esa', 'Thhalv10014375m.g' => 'esa', 'Thhalv10021264m.g' => 'esa', 'Thhalv10028856m.g' => 'esa', 'TPR.G1914' => 'tpr', 'TPR.G4757' => 'tpr', 'TPR.G5595' => 'tpr', 'TWI14G0952' => 'twi', 'TWI14G1307' => 'twi', 'TWI38G2143' => 'twi', 'TWI59G0826' => 'twi', 'TWI77G0527' => 'twi', 'TWI81G0150' => 'twi', 'unitig_21.g21018' => 'ugi', 'unitig_26.g9725' => 'ugi', 'unitig_744.g24653' => 'ugi', 'unitig_749.g13778' => 'ugi', 'unitig_899.g15035' => 'ugi', 'vmacro04296' => 'vma', 'vmacro04852' => 'vma', 'vmacro13404' => 'vma', 'vmacro20169' => 'vma', 'vmacro21014' => 'vma', 'VMungo0331G0237' => 'vmu', 'VMungo0331G0706' => 'vmu', 'VMungo0331G1361' => 'vmu', 'VMungo0331G1489' => 'vmu', 'VMungo0540G1037' => 'vmu', 'VMungo0720G2487' => 'vmu', 'VMungo0720G2721' => 'vmu', 'Zm00001eb086860' => 'zma', 'Zm00001eb104760' => 'zma', 'Zm00001eb148220' => 'zma', 'Zm00001eb259030' => 'zma', 'Zm00001eb289590' => 'zma', 'Zm00001eb420150' => 'zma' ), 'gf_id' => 'HOM05D000968', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000968' ), 'data_identifier' => 'HOM05D000968', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000968', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p31690' => 'bna', 'A03p36040' => 'bna', 'A03p53730' => 'bna', 'A04p01410' => 'bna', 'A05p05420' => 'bna', 'A05p39630' => 'bna', 'A05p39640' => 'bna', 'A09p00970' => 'bna', 'A09p53060' => 'bna', 'A10p31890' => 'bna', 'Aa31LG10G15040' => 'aar', 'Aa31LG1G21090' => 'aar', 'Aa31LG1G26900' => 'aar', 'Aa31LG3G1820' => 'aar', 'Aa31LG5G1100' => 'aar', 'Aa31LG6G4740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2265' => 'aag', 'Actinidia07998' => 'ach', 'Actinidia11266' => 'ach', 'Actinidia12682' => 'ach', 'Actinidia26479' => 'ach', 'Actinidia31406' => 'ach', 'Actinidia32437' => 'ach', 'Actinidia38862' => 'ach', 'Ah.05g174230' => 'amhyb', 'Ah.05g179070' => 'amhyb', 'Ah.05g179090' => 'amhyb', 'Ah.12g059950' => 'amhyb', 'AL3G20480' => 'aly', 'AL4G44520' => 'aly', 'AL5G43110' => 'aly', 'AL6G13890' => 'aly', 'AL6G52620' => 'aly', 'AL7G30830' => 'aly', 'Aqoxy1G00899' => 'aox', 'Aqoxy5G04333' => 'aox', 'Aqoxy7G00641' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3IZ0NN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4EF6AW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W9P8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79GA3M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C43NQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFCU6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G95YVJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCHK29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LU1UG8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX91RN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGB4B1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8DA0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9H7JI' => 'arhy', 'AT3G09320' => 'ath', 'AT3G60800' => 'ath', 'AT4G00840' => 'ath', 'AT4G22750' => 'ath', 'AT5G04270' => 'ath', 'ATR0090G003' => 'atr', 'ATR0559G349' => 'atr', 'ATR0680G261' => 'atr', 'ATR0810G048' => 'atr', 'Atru.chr12.831' => 'acertr', 'Atru.chr5.303' => 'acertr', 'Atru.chr5.748' => 'acertr', 'Atru.chr8.1999' => 'acertr', 'Atru.chr9.1436' => 'acertr', 'AUR62004211' => 'cqu', 'AUR62004548' => 'cqu', 'AUR62013637' => 'cqu', 'AUR62022662' => 'cqu', 'AUR62025777' => 'cqu', 'AUR62042386' => 'cqu', 'BcaB01g02310' => 'bca', 'BcaB01g06062' => 'bca', 'BcaB02g08975' => 'bca', 'BcaB02g08980' => 'bca', 'BcaC01g04228' => 'bca', 'BcaC01g06830' => 'bca', 'BcaC02g10186' => 'bca', 'BcaC02g12214' => 'bca', 'BcaC04g24101' => 'bca', 'BcaC05g29520' => 'bca', 'BcaC05g29661' => 'bca', 'BcaC06g32130' => 'bca', 'BcaC06g32131' => 'bca', 'BcaC07g40601' => 'bca', 'BcaC07g42641' => 'bca', 'BcaNung01038' => 'bca', 'BcaNung01676' => 'bca', 'BcaNung02480' => 'bca', 'BcaNung07376' => 'bca', 'BolC3t16146H' => 'bol', 'BolC3t16637H' => 'bol', 'BolC4t22257H' => 'bol', 'BolC4t24728H' => 'bol', 'BolC5t34517H' => 'bol', 'BolC7t45703H' => 'bol', 'BolC8t51166H' => 'bol', 'BolC9t53038H' => 'bol', 'BolC9t60000H' => 'bol', 'BraA01t01345Z' => 'bra', 'BraA01t01346Z' => 'bra', 'BraA01t01348Z' => 'bra', 'BraA03t12347Z' => 'bra', 'BraA03t12775Z' => 'bra', 'BraA03t14439Z' => 'bra', 'BraA04t15860Z' => 'bra', 'BraA05t19511Z' => 'bra', 'BraA05t22746Z' => 'bra', 'BraA09t35767Z' => 'bra', 'BraA09t40732Z' => 'bra', 'BraA10t45233Z' => 'bra', 'C03p38720' => 'bna', 'C03p43680' => 'bna', 'C04p06350' => 'bna', 'C04p31800' => 'bna', 'C05p58680' => 'bna', 'C07p52110' => 'bna', 'C08p35760' => 'bna', 'C09p01050' => 'bna', 'C09p72600' => 'bna', 'CAN.G106.2' => 'can', 'CAN.G1482.1' => 'can', 'CAN.G324.12' => 'can', 'CAN.G388.20' => 'can', 'CAN.G412.7' => 'can', 'CAN.G694.32' => 'can', 'CAN.G92.12' => 'can', 'CANSAT11G2353' => 'cansat', 'CANSAT21G1398' => 'cansat', 'CANSAT56G2456' => 'cansat', 'CANSAT56G3031' => 'cansat', 'CANSAT56G4539' => 'cansat', 'CARHR083680' => 'chi', 'CARHR171190' => 'chi', 'CARHR209010' => 'chi', 'CARHR229680' => 'chi', 'CARHR249490' => 'chi', 'Carub.0003s0844' => 'cru', 'Carub.0005s2755' => 'cru', 'Carub.0006s0322' => 'cru', 'Carub.0006s3586' => 'cru', 'Carub.0007s1855' => 'cru', 'Ca_07808_v3' => 'car', 'Ca_09535_v3' => 'car', 'Ca_10548_v3' => 'car', 'Ca_19913_v3' => 'car', 'Ca_19916_v3' => 'car', 'Ca_19975_v3' => 'car', 'CBR_g22876' => 'cbr', 'CBR_g22879' => 'cbr', 'CBR_g38491' => 'cbr', 'CBR_g54185' => 'cbr', 'CBR_g54190' => 'cbr', 'Cc02_g11020' => 'ccan', 'Cc02_g23920' => 'ccan', 'Cc02_g39860' => 'ccan', 'Cc02_g39870' => 'ccan', 'Cc03_g06760' => 'ccan', 'Cc06_g02450' => 'ccan', 'Cc09_g09450' => 'ccan', 'CDE02G1959' => 'cde', 'CDE04G0600' => 'cde', 'CDE07G1996' => 'cde', 'CDE07G2078' => 'cde', 'CDE11G0611' => 'cde', 'Cfa001683' => 'cfa', 'Cfa001734' => 'cfa', 'Cfa001737' => 'cfa', 'Cfa003751' => 'cfa', 'Cfa012019' => 'cfa', 'Cfa017353' => 'cfa', 'Cfa017732' => 'cfa', 'Cfa022464' => 'cfa', 'Ciclev10012400m.g' => 'ccl', 'Ciclev10021242m.g' => 'ccl', 'Ciclev10021302m.g' => 'ccl', 'Ciclev10021463m.g' => 'ccl', 'Ciclev10032359m.g' => 'ccl', 'CiPaw.01G081000' => 'cil', 'CiPaw.01G262500' => 'cil', 'CiPaw.01G269800' => 'cil', 'CiPaw.02G168400' => 'cil', 'CiPaw.05G119500' => 'cil', 'CiPaw.11G147300' => 'cil', 'ClCG01G003630' => 'cla', 'ClCG05G000510' => 'cla', 'ClCG05G002300' => 'cla', 'ClCG08G007650' => 'cla', 'ClCG10G021250' => 'cla', 'COL.COLO4_06218' => 'col', 'COL.COLO4_12538' => 'col', 'COL.COLO4_14775' => 'col', 'COL.COLO4_23875' => 'col', 'Cpa.g.sc141.16' => 'cpa', 'Cpa.g.sc169.16' => 'cpa', 'Cpa.g.sc244.4' => 'cpa', 'Cpa.g.sc244.5' => 'cpa', 'Cpa.g.sc29.87' => 'cpa', 'Cpa.g.sc53.115' => 'cpa', 'Cre03.g207502' => 'cre', 'Cre06.g277000' => 'cre', 'Cre09.g394050' => 'cre', 'CsaV3_3G007680' => 'csa', 'CsaV3_3G009710' => 'csa', 'CsaV3_3G034790' => 'csa', 'CsaV3_5G003750' => 'csa', 'CsaV3_6G036620' => 'csa', 'CSS0002288' => 'camsi', 'CSS0011250' => 'camsi', 'CSS0021619' => 'camsi', 'CSS0046701' => 'camsi', 'DCAR_006420' => 'dca', 'DCAR_006865' => 'dca', 'DCAR_008558' => 'dca', 'DCAR_028754' => 'dca', 'DCAR_028755' => 'dca', 'Dinv31218' => 'din', 'Dinv32371' => 'din', 'Dinv34250' => 'din', 'Dinv37156' => 'din', 'Dinv43704' => 'din', 'Duzib093G1811' => 'dzi', 'Duzib106G1622' => 'dzi', 'Duzib114G0504' => 'dzi', 'Duzib128G0338' => 'dzi', 'Duzib128G1577' => 'dzi', 'Duzib133G0104' => 'dzi', 'Duzib133G1080' => 'dzi', 'Duzib138G0324' => 'dzi', 'Duzib138G0394' => 'dzi', 'Duzib205G0122' => 'dzi', 'Duzib268G1020' => 'dzi', 'Duzib268G1359' => 'dzi', 'ECA232G3929' => 'eca', 'ECA236G2210' => 'eca', 'ECA236G2287' => 'eca', 'ECA240G4568' => 'eca', 'ECA247G0894' => 'eca', 'EL10Ac1g00200' => 'bvu', 'EL10Ac1g00886' => 'bvu', 'EL10As1g23091' => 'bvu', 'EL10As1g23092' => 'bvu', 'Eucgr.A01284' => 'egr', 'Eucgr.A01285' => 'egr', 'Eucgr.D02456' => 'egr', 'Eucgr.E00018' => 'egr', 'Eucgr.E01439' => 'egr', 'Eucgr.G02859' => 'egr', 'FAN01G0168' => 'fan', 'FAN01G0453' => 'fan', 'FAN01G2761' => 'fan', 'FAN02G1239' => 'fan', 'FAN03G0645' => 'fan', 'FAN03G2707' => 'fan', 'FAN03G2978' => 'fan', 'FAN04G0227' => 'fan', 'FAN06G0091' => 'fan', 'FAN06G1418' => 'fan', 'FAN06G1512' => 'fan', 'FAN06G1986' => 'fan', 'FAN06G2905' => 'fan', 'FAN06G4325' => 'fan', 'FAN08G0033' => 'fan', 'FAN09G0642' => 'fan', 'FAN10G1763' => 'fan', 'FAN10G2026' => 'fan', 'FAN10G2513' => 'fan', 'FAN10G3402' => 'fan', 'FAN10G3564' => 'fan', 'FAN10G3987' => 'fan', 'FAN13G1490' => 'fan', 'FAN14G5857' => 'fan', 'FAN18G1188' => 'fan', 'FvH4_5g00750' => 'fve', 'FvH4_6g13410' => 'fve', 'FvH4_7g11740' => 'fve', 'FvH4_7g17410' => 'fve', 'FvH4_7g18860' => 'fve', 'Glyma.01G099100' => 'gma', 'Glyma.01G142300' => 'gma', 'Glyma.03G025500' => 'gma', 'Glyma.03G069700' => 'gma', 'Glyma.03G260000' => 'gma', 'Glyma.09G269800' => 'gma', 'Glyma.10G208700' => 'gma', 'Glyma.18G220400' => 'gma', 'Glyma.20G182000' => 'gma', 'Gohir.A01G221726' => 'ghi', 'Gohir.A07G134600' => 'ghi', 'Gohir.A07G146000' => 'ghi', 'Gohir.A08G173900' => 'ghi', 'Gohir.A09G194900' => 'ghi', 'Gohir.A10G204100' => 'ghi', 'Gohir.A11G080600' => 'ghi', 'Gohir.A11G327500' => 'ghi', 'Gohir.A12G101800' => 'ghi', 'Gohir.D01G211200' => 'ghi', 'Gohir.D07G139200' => 'ghi', 'Gohir.D07G152100' => 'ghi', 'Gohir.D08G192600' => 'ghi', 'Gohir.D09G189200' => 'ghi', 'Gohir.D10G212000' => 'ghi', 'Gohir.D11G085200' => 'ghi', 'Gohir.D11G346400' => 'ghi', 'Gohir.D12G104800' => 'ghi', 'Gorai.001G151300' => 'gra', 'Gorai.001G174100' => 'gra', 'Gorai.002G257000' => 'gra', 'Gorai.004G202600' => 'gra', 'Gorai.007G090900' => 'gra', 'Gorai.007G376700' => 'gra', 'Gorai.008G114100' => 'gra', 'Gorai.011G237900' => 'gra', 'GSVIVG01005450001' => 'vvi', 'GSVIVG01016232001' => 'vvi', 'GSVIVG01026157001' => 'vvi', 'GSVIVG01027419001' => 'vvi', 'GSVIVG01027631001' => 'vvi', 'GSVIVG01034143001' => 'vvi', 'HanXRQChr03g0093921' => 'han', 'HanXRQChr04g0120001' => 'han', 'HanXRQChr04g0122561' => 'han', 'HanXRQChr09g0246851' => 'han', 'HanXRQChr10g0293311' => 'han', 'HanXRQChr13g0425231' => 'han', 'HanXRQChr16g0532571' => 'han', 'Haze_09050' => 'cav', 'Haze_15715' => 'cav', 'Haze_15716' => 'cav', 'Haze_16803' => 'cav', 'Haze_16850' => 'cav', 'Hma1.2p1_0301F.1_g118655' => 'hma', 'Hma1.2p1_0309F.1_g120590' => 'hma', 'Hma1.2p1_0936F.1_g238900' => 'hma', 'Hma1.2p1_3552F.1_g336740' => 'hma', 'HPP92_003520' => 'vpl', 'HPP92_006628' => 'vpl', 'HPP92_006645' => 'vpl', 'HPP92_014669' => 'vpl', 'HPP92_015077' => 'vpl', 'Hund16742' => 'sun', 'Hund17022' => 'sun', 'Lalb_Chr02g0152131' => 'lal', 'Lalb_Chr05g0225371' => 'lal', 'Lalb_Chr07g0189841' => 'lal', 'Lalb_Chr07g0192961' => 'lal', 'Lalb_Chr12g0208221' => 'lal', 'Lalb_Chr13g0291211' => 'lal', 'Lalb_Chr13g0291781' => 'lal', 'Lalb_Chr18g0044651' => 'lal', 'Lalb_Chr21g0313731' => 'lal', 'Lj1g0022533' => 'lja', 'Lj2A18T50' => 'lonja', 'Lj2A92G93' => 'lonja', 'Lj3A965T73' => 'lonja', 'Lj3g0000673' => 'lja', 'Lj3g0002666' => 'lja', 'Lj4g0016985' => 'lja', 'Lj5g0003625' => 'lja', 'Lj7A529G36' => 'lonja', 'Lj9A569T49' => 'lonja', 'Lj9A604T63' => 'lonja', 'Lsat_1_v5_gn_3_132060' => 'lsa', 'Lsat_1_v5_gn_4_68941' => 'lsa', 'Lsat_1_v5_gn_5_95580' => 'lsa', 'Lsat_1_v5_gn_7_161' => 'lsa', 'Lsat_1_v5_gn_7_7041' => 'lsa', 'Lsat_1_v5_gn_9_33481' => 'lsa', 'Lsat_1_v5_gn_9_68260' => 'lsa', 'Manes.01G073100' => 'mes', 'Manes.01G266300' => 'mes', 'Manes.02G033300' => 'mes', 'Manes.05G017900' => 'mes', 'Manes.05G046100' => 'mes', 'Manes.08G080900' => 'mes', 'Manes.10G049400' => 'mes', 'Mapoly0009s0186' => 'mpo', 'Mapoly0036s0118' => 'mpo', 'Mapoly0101s0046' => 'mpo', 'MBI04_g30218_MAGBIO' => 'mbi', 'MBI04_g35564_MAGBIO' => 'mbi', 'MBI12_g34011_MAGBIO' => 'mbi', 'MBI14_g04655_MAGBIO' => 'mbi', 'MCO07G653' => 'mco', 'MCO10G173' => 'mco', 'MD01G1087100' => 'mdo', 'MD01G1104200' => 'mdo', 'MD02G1205100' => 'mdo', 'MD04G1079200' => 'mdo', 'MD04G1131400' => 'mdo', 'MD07G1121600' => 'mdo', 'MD07G1157300' => 'mdo', 'MD07G1171000' => 'mdo', 'MD12G1144500' => 'mdo', 'Medtr1g094610' => 'mtr', 'Medtr4g021795' => 'mtr', 'Medtr4g023760' => 'mtr', 'Medtr7g118050' => 'mtr', 'MELO3C005582.2' => 'cme', 'MELO3C005989.2' => 'cme', 'MELO3C006192.2' => 'cme', 'MELO3C009248.2' => 'cme', 'MELO3C019817.2' => 'cme', 'Migut.B01625' => 'egut', 'Migut.B01915' => 'egut', 'Migut.F01721' => 'egut', 'Migut.J00314' => 'egut', 'MSTRG.20742' => 'ama', 'MSTRG.8134' => 'ama', 'Nitab4.5_0000096g0010' => 'nta', 'Nitab4.5_0000202g0030' => 'nta', 'Nitab4.5_0000216g0370' => 'nta', 'Nitab4.5_0000457g0230' => 'nta', 'Nitab4.5_0001702g0170' => 'nta', 'Nitab4.5_0003607g0010' => 'nta', 'Nitab4.5_0004917g0020' => 'nta', 'Nitab4.5_0007059g0010' => 'nta', 'Nitab4.5_0007184g0010' => 'nta', 'Nitab4.5_0007346g0020' => 'nta', 'Nn1g00410' => 'nnu', 'Nn1g01252' => 'nnu', 'Nn2g11168' => 'nnu', 'Nn2g13403' => 'nnu', 'Nn2g13760' => 'nnu', 'Nn4g26380' => 'nnu', 'Oeu000806.2' => 'oeu', 'Oeu005788.1' => 'oeu', 'Oeu006900.3' => 'oeu', 'Oeu007797.1' => 'oeu', 'Oeu011932.1' => 'oeu', 'Oeu022739.1' => 'oeu', 'Oeu037918.1' => 'oeu', 'Oeu055490.2' => 'oeu', 'Os01g0844400' => 'osa', 'Os02g0819100' => 'osa', 'Os03g0804300' => 'osa', 'Os05g0458000' => 'osa', 'Os07g0467800' => 'osa', 'Os12g0602200' => 'osa', 'Peaxi162Scf00013g03444' => 'pax', 'Peaxi162Scf00094g01120' => 'pax', 'Peaxi162Scf00191g01211' => 'pax', 'Peaxi162Scf00238g01110' => 'pax', 'Peaxi162Scf00330g00719' => 'pax', 'Peaxi162Scf00627g00018' => 'pax', 'PGR031G2686' => 'pgr', 'PGR042G0809' => 'pgr', 'PGR142G0193' => 'pgr', 'PGSC0003DMG400011066' => 'stu', 'PGSC0003DMG400012041' => 'stu', 'PGSC0003DMG400013678' => 'stu', 'PGSC0003DMG400023477' => 'stu', 'PGSC0003DMG400025956' => 'stu', 'PGSC0003DMG401019151' => 'stu', 'Phvul.006G116400' => 'pvu', 'Phvul.007G097300' => 'pvu', 'Phvul.010G015000' => 'pvu', 'Phvul.010G083900' => 'pvu', 'Potri.001G117100' => 'ptr', 'Potri.002G147300' => 'ptr', 'Potri.003G115600' => 'ptr', 'Potri.006G087400' => 'ptr', 'Potri.010G226100' => 'ptr', 'Potri.014G069200' => 'ptr', 'Potri.014G104000' => 'ptr', 'Potri.016G100200' => 'ptr', 'Pp3c10_20450' => 'ppa', 'Pp3c1_42400' => 'ppa', 'Pp3c3_24390' => 'ppa', 'Pp3c3_2860' => 'ppa', 'PRCOL_00003193' => 'pco', 'Prupe.2G144500' => 'ppe', 'Prupe.2G195700' => 'ppe', 'Prupe.2G209800' => 'ppe', 'Prupe.5G080000' => 'ppe', 'Prupe.6G257900' => 'ppe', 'Psat3g001160' => 'psa', 'Psat6g181880' => 'psa', 'Psat7g233720' => 'psa', 'PSO063G7587' => 'pso', 'PSO339G2145' => 'pso', 'PSO339G3369' => 'pso', 'PSO478G2747' => 'pso', 'PSO513G0140' => 'pso', 'PSO782G1614' => 'pso', 'PSO782G4889' => 'pso', 'PSO782G5485' => 'pso', 'PSO801G0241' => 'pso', 'QL07p048854' => 'qlo', 'QL08p046745' => 'qlo', 'QL08p052606' => 'qlo', 'QL08p053414' => 'qlo', 'QL08p054868' => 'qlo', 'RcHm_v2.0_Chr1g0350251' => 'rch', 'RcHm_v2.0_Chr1g0360851' => 'rch', 'RcHm_v2.0_Chr1g0362791' => 'rch', 'RcHm_v2.0_Chr3g0466281' => 'rch', 'RcHm_v2.0_Chr7g0201481' => 'rch', 'Rhsim01G0148600' => 'rsi', 'Rhsim05G0194400' => 'rsi', 'Rhsim07G0000700' => 'rsi', 'Rhsim07G0000800' => 'rsi', 'Rhsim07G0027900' => 'rsi', 'Rhsim09G0149500' => 'rsi', 'RhsimUnG0186900' => 'rsi', 'Sabra01G0089900' => 'sbr', 'Sabra02G0114700' => 'sbr', 'Sabra02G0116300' => 'sbr', 'Sabra03G0080100' => 'sbr', 'Sabra08G0024300' => 'sbr', 'Sabra10G0174300' => 'sbr', 'Sabra14G0048900' => 'sbr', 'Sabra14G0076500' => 'sbr', 'SalBow5G2513' => 'sbo', 'Sc01g0002300' => 'sci', 'Sc01g0004450' => 'sci', 'Sc06g0001680' => 'sci', 'Sc23g0003580' => 'sci', 'Sed0000913' => 'sed', 'Sed0001655' => 'sed', 'Sed0007745' => 'sed', 'Sed0010951' => 'sed', 'Sed0017599' => 'sed', 'Sed0021405' => 'sed', 'Sed0022810' => 'sed', 'SEGI_07099' => 'sgi', 'SEGI_11931' => 'sgi', 'SEGI_13187' => 'sgi', 'SEGI_29958' => 'sgi', 'SEGI_36351' => 'sgi', 'SGA_v2.0_scaffold126G33770' => 'sas', 'SGA_v2.0_scaffold153G37003' => 'sas', 'SGA_v2.0_scaffold2G01359' => 'sas', 'SGA_v2.0_scaffold5G03064' => 'sas', 'SGA_v2.0_scaffold95G28903' => 'sas', 'SHI12701' => 'shi', 'SHI26410' => 'shi', 'SHI38997' => 'shi', 'SHI53759' => 'shi', 'SHI53886' => 'shi', 'SHI54714' => 'shi', 'SMO011G0041' => 'smo', 'SMO146G0251' => 'smo', 'SMO160G0004' => 'smo', 'SMO174G0057' => 'smo', 'SMO244G0089' => 'smo', 'SMO296G0011' => 'smo', 'Solyc01g091280.3' => 'sly', 'Solyc05g047610.3' => 'sly', 'Solyc05g047640.3' => 'sly', 'Solyc05g055630.3' => 'sly', 'Solyc10g018160.2' => 'sly', 'Solyc10g084820.2' => 'sly', 'Solyc10g086565.2' => 'sly', 'Sopen01g037030' => 'spe', 'Sopen05g027920' => 'spe', 'Sopen05g034070' => 'spe', 'Sopen10g007260' => 'spe', 'Sopen10g034260' => 'spe', 'Sopen10g035950' => 'spe', 'Sp3g07710' => 'spa', 'Sp4g27420' => 'spa', 'Sp5g02450' => 'spa', 'Sp6g01280' => 'spa', 'Sp6g38480' => 'spa', 'Sp7g20780' => 'spa', 'TAR374G1413' => 'tar', 'TAR623G1777' => 'tar', 'TAR629G2370' => 'tar', 'TAR633G1759' => 'tar', 'TAR636G3387' => 'tar', 'THA.LOC104802447' => 'tha', 'THA.LOC104813916' => 'tha', 'THA.LOC104816423' => 'tha', 'THA.LOC104817246' => 'tha', 'THA.LOC104825895' => 'tha', 'Thecc.01G335200' => 'tca', 'Thecc.01G377400' => 'tca', 'Thecc.03G262200' => 'tca', 'Thecc.05G036800' => 'tca', 'Thecc.10G080500' => 'tca', 'Thecc.10G080800' => 'tca', 'Thhalv10001560m.g' => 'esa', 'Thhalv10006120m.g' => 'esa', 'Thhalv10014375m.g' => 'esa', 'Thhalv10021264m.g' => 'esa', 'Thhalv10028856m.g' => 'esa', 'TPR.G1914' => 'tpr', 'TPR.G4757' => 'tpr', 'TPR.G5595' => 'tpr', 'TWI14G0952' => 'twi', 'TWI14G1307' => 'twi', 'TWI38G2143' => 'twi', 'TWI59G0826' => 'twi', 'TWI77G0527' => 'twi', 'TWI81G0150' => 'twi', 'unitig_21.g21018' => 'ugi', 'unitig_26.g9725' => 'ugi', 'unitig_744.g24653' => 'ugi', 'unitig_749.g13778' => 'ugi', 'unitig_899.g15035' => 'ugi', 'vmacro04296' => 'vma', 'vmacro04852' => 'vma', 'vmacro13404' => 'vma', 'vmacro20169' => 'vma', 'vmacro21014' => 'vma', 'VMungo0331G0237' => 'vmu', 'VMungo0331G0706' => 'vmu', 'VMungo0331G1361' => 'vmu', 'VMungo0331G1489' => 'vmu', 'VMungo0540G1037' => 'vmu', 'VMungo0720G2487' => 'vmu', 'VMungo0720G2721' => 'vmu', 'Zm00001eb086860' => 'zma', 'Zm00001eb104760' => 'zma', 'Zm00001eb148220' => 'zma', 'Zm00001eb259030' => 'zma', 'Zm00001eb289590' => 'zma', 'Zm00001eb420150' => 'zma' ) $gf_id = 'HOM05D000968' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000968' ) $data_identifier = 'HOM05D000968' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 19, 'bol' => (int) 9, 'bra' => (int) 12, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 5, 'ccan' => (int) 7, 'cde' => (int) 5, 'cfa' => (int) 8, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 4, 'dca' => (int) 5, 'din' => (int) 5, 'dzi' => (int) 12, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 25, 'fve' => (int) 5, 'gma' => (int) 9, 'ghi' => (int) 18, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 7, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 5, 'sun' => (int) 2, 'lal' => (int) 9, 'lja' => (int) 5, 'lonja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 9, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 2, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 3, 'stu' => (int) 6, 'pvu' => (int) 4, 'ptr' => (int) 8, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 3, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 1, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 5, 'sas' => (int) 5, 'shi' => (int) 6, 'smo' => (int) 6, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 3, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420150' $species_info = array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ) $local_species = 'cme' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000968', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p31690' => 'bna', 'A03p36040' => 'bna', 'A03p53730' => 'bna', 'A04p01410' => 'bna', 'A05p05420' => 'bna', 'A05p39630' => 'bna', 'A05p39640' => 'bna', 'A09p00970' => 'bna', 'A09p53060' => 'bna', 'A10p31890' => 'bna', 'Aa31LG10G15040' => 'aar', 'Aa31LG1G21090' => 'aar', 'Aa31LG1G26900' => 'aar', 'Aa31LG3G1820' => 'aar', 'Aa31LG5G1100' => 'aar', 'Aa31LG6G4740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2265' => 'aag', 'Actinidia07998' => 'ach', 'Actinidia11266' => 'ach', 'Actinidia12682' => 'ach', 'Actinidia26479' => 'ach', 'Actinidia31406' => 'ach', 'Actinidia32437' => 'ach', 'Actinidia38862' => 'ach', 'Ah.05g174230' => 'amhyb', 'Ah.05g179070' => 'amhyb', 'Ah.05g179090' => 'amhyb', 'Ah.12g059950' => 'amhyb', 'AL3G20480' => 'aly', 'AL4G44520' => 'aly', 'AL5G43110' => 'aly', 'AL6G13890' => 'aly', 'AL6G52620' => 'aly', 'AL7G30830' => 'aly', 'Aqoxy1G00899' => 'aox', 'Aqoxy5G04333' => 'aox', 'Aqoxy7G00641' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3IZ0NN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4EF6AW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W9P8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79GA3M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C43NQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFCU6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G95YVJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCHK29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LU1UG8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX91RN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGB4B1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8DA0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9H7JI' => 'arhy', 'AT3G09320' => 'ath', 'AT3G60800' => 'ath', 'AT4G00840' => 'ath', 'AT4G22750' => 'ath', 'AT5G04270' => 'ath', 'ATR0090G003' => 'atr', 'ATR0559G349' => 'atr', 'ATR0680G261' => 'atr', 'ATR0810G048' => 'atr', 'Atru.chr12.831' => 'acertr', 'Atru.chr5.303' => 'acertr', 'Atru.chr5.748' => 'acertr', 'Atru.chr8.1999' => 'acertr', 'Atru.chr9.1436' => 'acertr', 'AUR62004211' => 'cqu', 'AUR62004548' => 'cqu', 'AUR62013637' => 'cqu', 'AUR62022662' => 'cqu', 'AUR62025777' => 'cqu', 'AUR62042386' => 'cqu', 'BcaB01g02310' => 'bca', 'BcaB01g06062' => 'bca', 'BcaB02g08975' => 'bca', 'BcaB02g08980' => 'bca', 'BcaC01g04228' => 'bca', 'BcaC01g06830' => 'bca', 'BcaC02g10186' => 'bca', 'BcaC02g12214' => 'bca', 'BcaC04g24101' => 'bca', 'BcaC05g29520' => 'bca', 'BcaC05g29661' => 'bca', 'BcaC06g32130' => 'bca', 'BcaC06g32131' => 'bca', 'BcaC07g40601' => 'bca', 'BcaC07g42641' => 'bca', 'BcaNung01038' => 'bca', 'BcaNung01676' => 'bca', 'BcaNung02480' => 'bca', 'BcaNung07376' => 'bca', 'BolC3t16146H' => 'bol', 'BolC3t16637H' => 'bol', 'BolC4t22257H' => 'bol', 'BolC4t24728H' => 'bol', 'BolC5t34517H' => 'bol', 'BolC7t45703H' => 'bol', 'BolC8t51166H' => 'bol', 'BolC9t53038H' => 'bol', 'BolC9t60000H' => 'bol', 'BraA01t01345Z' => 'bra', 'BraA01t01346Z' => 'bra', 'BraA01t01348Z' => 'bra', 'BraA03t12347Z' => 'bra', 'BraA03t12775Z' => 'bra', 'BraA03t14439Z' => 'bra', 'BraA04t15860Z' => 'bra', 'BraA05t19511Z' => 'bra', 'BraA05t22746Z' => 'bra', 'BraA09t35767Z' => 'bra', 'BraA09t40732Z' => 'bra', 'BraA10t45233Z' => 'bra', 'C03p38720' => 'bna', 'C03p43680' => 'bna', 'C04p06350' => 'bna', 'C04p31800' => 'bna', 'C05p58680' => 'bna', 'C07p52110' => 'bna', 'C08p35760' => 'bna', 'C09p01050' => 'bna', 'C09p72600' => 'bna', 'CAN.G106.2' => 'can', 'CAN.G1482.1' => 'can', 'CAN.G324.12' => 'can', 'CAN.G388.20' => 'can', 'CAN.G412.7' => 'can', 'CAN.G694.32' => 'can', 'CAN.G92.12' => 'can', 'CANSAT11G2353' => 'cansat', 'CANSAT21G1398' => 'cansat', 'CANSAT56G2456' => 'cansat', 'CANSAT56G3031' => 'cansat', 'CANSAT56G4539' => 'cansat', 'CARHR083680' => 'chi', 'CARHR171190' => 'chi', 'CARHR209010' => 'chi', 'CARHR229680' => 'chi', 'CARHR249490' => 'chi', 'Carub.0003s0844' => 'cru', 'Carub.0005s2755' => 'cru', 'Carub.0006s0322' => 'cru', 'Carub.0006s3586' => 'cru', 'Carub.0007s1855' => 'cru', 'Ca_07808_v3' => 'car', 'Ca_09535_v3' => 'car', 'Ca_10548_v3' => 'car', 'Ca_19913_v3' => 'car', 'Ca_19916_v3' => 'car', 'Ca_19975_v3' => 'car', 'CBR_g22876' => 'cbr', 'CBR_g22879' => 'cbr', 'CBR_g38491' => 'cbr', 'CBR_g54185' => 'cbr', 'CBR_g54190' => 'cbr', 'Cc02_g11020' => 'ccan', 'Cc02_g23920' => 'ccan', 'Cc02_g39860' => 'ccan', 'Cc02_g39870' => 'ccan', 'Cc03_g06760' => 'ccan', 'Cc06_g02450' => 'ccan', 'Cc09_g09450' => 'ccan', 'CDE02G1959' => 'cde', 'CDE04G0600' => 'cde', 'CDE07G1996' => 'cde', 'CDE07G2078' => 'cde', 'CDE11G0611' => 'cde', 'Cfa001683' => 'cfa', 'Cfa001734' => 'cfa', 'Cfa001737' => 'cfa', 'Cfa003751' => 'cfa', 'Cfa012019' => 'cfa', 'Cfa017353' => 'cfa', 'Cfa017732' => 'cfa', 'Cfa022464' => 'cfa', 'Ciclev10012400m.g' => 'ccl', 'Ciclev10021242m.g' => 'ccl', 'Ciclev10021302m.g' => 'ccl', 'Ciclev10021463m.g' => 'ccl', 'Ciclev10032359m.g' => 'ccl', 'CiPaw.01G081000' => 'cil', 'CiPaw.01G262500' => 'cil', 'CiPaw.01G269800' => 'cil', 'CiPaw.02G168400' => 'cil', 'CiPaw.05G119500' => 'cil', 'CiPaw.11G147300' => 'cil', 'ClCG01G003630' => 'cla', 'ClCG05G000510' => 'cla', 'ClCG05G002300' => 'cla', 'ClCG08G007650' => 'cla', 'ClCG10G021250' => 'cla', 'COL.COLO4_06218' => 'col', 'COL.COLO4_12538' => 'col', 'COL.COLO4_14775' => 'col', 'COL.COLO4_23875' => 'col', 'Cpa.g.sc141.16' => 'cpa', 'Cpa.g.sc169.16' => 'cpa', 'Cpa.g.sc244.4' => 'cpa', 'Cpa.g.sc244.5' => 'cpa', 'Cpa.g.sc29.87' => 'cpa', 'Cpa.g.sc53.115' => 'cpa', 'Cre03.g207502' => 'cre', 'Cre06.g277000' => 'cre', 'Cre09.g394050' => 'cre', 'CsaV3_3G007680' => 'csa', 'CsaV3_3G009710' => 'csa', 'CsaV3_3G034790' => 'csa', 'CsaV3_5G003750' => 'csa', 'CsaV3_6G036620' => 'csa', 'CSS0002288' => 'camsi', 'CSS0011250' => 'camsi', 'CSS0021619' => 'camsi', 'CSS0046701' => 'camsi', 'DCAR_006420' => 'dca', 'DCAR_006865' => 'dca', 'DCAR_008558' => 'dca', 'DCAR_028754' => 'dca', 'DCAR_028755' => 'dca', 'Dinv31218' => 'din', 'Dinv32371' => 'din', 'Dinv34250' => 'din', 'Dinv37156' => 'din', 'Dinv43704' => 'din', 'Duzib093G1811' => 'dzi', 'Duzib106G1622' => 'dzi', 'Duzib114G0504' => 'dzi', 'Duzib128G0338' => 'dzi', 'Duzib128G1577' => 'dzi', 'Duzib133G0104' => 'dzi', 'Duzib133G1080' => 'dzi', 'Duzib138G0324' => 'dzi', 'Duzib138G0394' => 'dzi', 'Duzib205G0122' => 'dzi', 'Duzib268G1020' => 'dzi', 'Duzib268G1359' => 'dzi', 'ECA232G3929' => 'eca', 'ECA236G2210' => 'eca', 'ECA236G2287' => 'eca', 'ECA240G4568' => 'eca', 'ECA247G0894' => 'eca', 'EL10Ac1g00200' => 'bvu', 'EL10Ac1g00886' => 'bvu', 'EL10As1g23091' => 'bvu', 'EL10As1g23092' => 'bvu', 'Eucgr.A01284' => 'egr', 'Eucgr.A01285' => 'egr', 'Eucgr.D02456' => 'egr', 'Eucgr.E00018' => 'egr', 'Eucgr.E01439' => 'egr', 'Eucgr.G02859' => 'egr', 'FAN01G0168' => 'fan', 'FAN01G0453' => 'fan', 'FAN01G2761' => 'fan', 'FAN02G1239' => 'fan', 'FAN03G0645' => 'fan', 'FAN03G2707' => 'fan', 'FAN03G2978' => 'fan', 'FAN04G0227' => 'fan', 'FAN06G0091' => 'fan', 'FAN06G1418' => 'fan', 'FAN06G1512' => 'fan', 'FAN06G1986' => 'fan', 'FAN06G2905' => 'fan', 'FAN06G4325' => 'fan', 'FAN08G0033' => 'fan', 'FAN09G0642' => 'fan', 'FAN10G1763' => 'fan', 'FAN10G2026' => 'fan', 'FAN10G2513' => 'fan', 'FAN10G3402' => 'fan', 'FAN10G3564' => 'fan', 'FAN10G3987' => 'fan', 'FAN13G1490' => 'fan', 'FAN14G5857' => 'fan', 'FAN18G1188' => 'fan', 'FvH4_5g00750' => 'fve', 'FvH4_6g13410' => 'fve', 'FvH4_7g11740' => 'fve', 'FvH4_7g17410' => 'fve', 'FvH4_7g18860' => 'fve', 'Glyma.01G099100' => 'gma', 'Glyma.01G142300' => 'gma', 'Glyma.03G025500' => 'gma', 'Glyma.03G069700' => 'gma', 'Glyma.03G260000' => 'gma', 'Glyma.09G269800' => 'gma', 'Glyma.10G208700' => 'gma', 'Glyma.18G220400' => 'gma', 'Glyma.20G182000' => 'gma', 'Gohir.A01G221726' => 'ghi', 'Gohir.A07G134600' => 'ghi', 'Gohir.A07G146000' => 'ghi', 'Gohir.A08G173900' => 'ghi', 'Gohir.A09G194900' => 'ghi', 'Gohir.A10G204100' => 'ghi', 'Gohir.A11G080600' => 'ghi', 'Gohir.A11G327500' => 'ghi', 'Gohir.A12G101800' => 'ghi', 'Gohir.D01G211200' => 'ghi', 'Gohir.D07G139200' => 'ghi', 'Gohir.D07G152100' => 'ghi', 'Gohir.D08G192600' => 'ghi', 'Gohir.D09G189200' => 'ghi', 'Gohir.D10G212000' => 'ghi', 'Gohir.D11G085200' => 'ghi', 'Gohir.D11G346400' => 'ghi', 'Gohir.D12G104800' => 'ghi', 'Gorai.001G151300' => 'gra', 'Gorai.001G174100' => 'gra', 'Gorai.002G257000' => 'gra', 'Gorai.004G202600' => 'gra', 'Gorai.007G090900' => 'gra', 'Gorai.007G376700' => 'gra', 'Gorai.008G114100' => 'gra', 'Gorai.011G237900' => 'gra', 'GSVIVG01005450001' => 'vvi', 'GSVIVG01016232001' => 'vvi', 'GSVIVG01026157001' => 'vvi', 'GSVIVG01027419001' => 'vvi', 'GSVIVG01027631001' => 'vvi', 'GSVIVG01034143001' => 'vvi', 'HanXRQChr03g0093921' => 'han', 'HanXRQChr04g0120001' => 'han', 'HanXRQChr04g0122561' => 'han', 'HanXRQChr09g0246851' => 'han', 'HanXRQChr10g0293311' => 'han', 'HanXRQChr13g0425231' => 'han', 'HanXRQChr16g0532571' => 'han', 'Haze_09050' => 'cav', 'Haze_15715' => 'cav', 'Haze_15716' => 'cav', 'Haze_16803' => 'cav', 'Haze_16850' => 'cav', 'Hma1.2p1_0301F.1_g118655' => 'hma', 'Hma1.2p1_0309F.1_g120590' => 'hma', 'Hma1.2p1_0936F.1_g238900' => 'hma', 'Hma1.2p1_3552F.1_g336740' => 'hma', 'HPP92_003520' => 'vpl', 'HPP92_006628' => 'vpl', 'HPP92_006645' => 'vpl', 'HPP92_014669' => 'vpl', 'HPP92_015077' => 'vpl', 'Hund16742' => 'sun', 'Hund17022' => 'sun', 'Lalb_Chr02g0152131' => 'lal', 'Lalb_Chr05g0225371' => 'lal', 'Lalb_Chr07g0189841' => 'lal', 'Lalb_Chr07g0192961' => 'lal', 'Lalb_Chr12g0208221' => 'lal', 'Lalb_Chr13g0291211' => 'lal', 'Lalb_Chr13g0291781' => 'lal', 'Lalb_Chr18g0044651' => 'lal', 'Lalb_Chr21g0313731' => 'lal', 'Lj1g0022533' => 'lja', 'Lj2A18T50' => 'lonja', 'Lj2A92G93' => 'lonja', 'Lj3A965T73' => 'lonja', 'Lj3g0000673' => 'lja', 'Lj3g0002666' => 'lja', 'Lj4g0016985' => 'lja', 'Lj5g0003625' => 'lja', 'Lj7A529G36' => 'lonja', 'Lj9A569T49' => 'lonja', 'Lj9A604T63' => 'lonja', 'Lsat_1_v5_gn_3_132060' => 'lsa', 'Lsat_1_v5_gn_4_68941' => 'lsa', 'Lsat_1_v5_gn_5_95580' => 'lsa', 'Lsat_1_v5_gn_7_161' => 'lsa', 'Lsat_1_v5_gn_7_7041' => 'lsa', 'Lsat_1_v5_gn_9_33481' => 'lsa', 'Lsat_1_v5_gn_9_68260' => 'lsa', 'Manes.01G073100' => 'mes', 'Manes.01G266300' => 'mes', 'Manes.02G033300' => 'mes', 'Manes.05G017900' => 'mes', 'Manes.05G046100' => 'mes', 'Manes.08G080900' => 'mes', 'Manes.10G049400' => 'mes', 'Mapoly0009s0186' => 'mpo', 'Mapoly0036s0118' => 'mpo', 'Mapoly0101s0046' => 'mpo', 'MBI04_g30218_MAGBIO' => 'mbi', 'MBI04_g35564_MAGBIO' => 'mbi', 'MBI12_g34011_MAGBIO' => 'mbi', 'MBI14_g04655_MAGBIO' => 'mbi', 'MCO07G653' => 'mco', 'MCO10G173' => 'mco', 'MD01G1087100' => 'mdo', 'MD01G1104200' => 'mdo', 'MD02G1205100' => 'mdo', 'MD04G1079200' => 'mdo', 'MD04G1131400' => 'mdo', 'MD07G1121600' => 'mdo', 'MD07G1157300' => 'mdo', 'MD07G1171000' => 'mdo', 'MD12G1144500' => 'mdo', 'Medtr1g094610' => 'mtr', 'Medtr4g021795' => 'mtr', 'Medtr4g023760' => 'mtr', 'Medtr7g118050' => 'mtr', 'MELO3C005582.2' => 'cme', 'MELO3C005989.2' => 'cme', 'MELO3C006192.2' => 'cme', 'MELO3C009248.2' => 'cme', 'MELO3C019817.2' => 'cme', 'Migut.B01625' => 'egut', 'Migut.B01915' => 'egut', 'Migut.F01721' => 'egut', 'Migut.J00314' => 'egut', 'MSTRG.20742' => 'ama', 'MSTRG.8134' => 'ama', 'Nitab4.5_0000096g0010' => 'nta', 'Nitab4.5_0000202g0030' => 'nta', 'Nitab4.5_0000216g0370' => 'nta', 'Nitab4.5_0000457g0230' => 'nta', 'Nitab4.5_0001702g0170' => 'nta', 'Nitab4.5_0003607g0010' => 'nta', 'Nitab4.5_0004917g0020' => 'nta', 'Nitab4.5_0007059g0010' => 'nta', 'Nitab4.5_0007184g0010' => 'nta', 'Nitab4.5_0007346g0020' => 'nta', 'Nn1g00410' => 'nnu', 'Nn1g01252' => 'nnu', 'Nn2g11168' => 'nnu', 'Nn2g13403' => 'nnu', 'Nn2g13760' => 'nnu', 'Nn4g26380' => 'nnu', 'Oeu000806.2' => 'oeu', 'Oeu005788.1' => 'oeu', 'Oeu006900.3' => 'oeu', 'Oeu007797.1' => 'oeu', 'Oeu011932.1' => 'oeu', 'Oeu022739.1' => 'oeu', 'Oeu037918.1' => 'oeu', 'Oeu055490.2' => 'oeu', 'Os01g0844400' => 'osa', 'Os02g0819100' => 'osa', 'Os03g0804300' => 'osa', 'Os05g0458000' => 'osa', 'Os07g0467800' => 'osa', 'Os12g0602200' => 'osa', 'Peaxi162Scf00013g03444' => 'pax', 'Peaxi162Scf00094g01120' => 'pax', 'Peaxi162Scf00191g01211' => 'pax', 'Peaxi162Scf00238g01110' => 'pax', 'Peaxi162Scf00330g00719' => 'pax', 'Peaxi162Scf00627g00018' => 'pax', 'PGR031G2686' => 'pgr', 'PGR042G0809' => 'pgr', 'PGR142G0193' => 'pgr', 'PGSC0003DMG400011066' => 'stu', 'PGSC0003DMG400012041' => 'stu', 'PGSC0003DMG400013678' => 'stu', 'PGSC0003DMG400023477' => 'stu', 'PGSC0003DMG400025956' => 'stu', 'PGSC0003DMG401019151' => 'stu', 'Phvul.006G116400' => 'pvu', 'Phvul.007G097300' => 'pvu', 'Phvul.010G015000' => 'pvu', 'Phvul.010G083900' => 'pvu', 'Potri.001G117100' => 'ptr', 'Potri.002G147300' => 'ptr', 'Potri.003G115600' => 'ptr', 'Potri.006G087400' => 'ptr', 'Potri.010G226100' => 'ptr', 'Potri.014G069200' => 'ptr', 'Potri.014G104000' => 'ptr', 'Potri.016G100200' => 'ptr', 'Pp3c10_20450' => 'ppa', 'Pp3c1_42400' => 'ppa', 'Pp3c3_24390' => 'ppa', 'Pp3c3_2860' => 'ppa', 'PRCOL_00003193' => 'pco', 'Prupe.2G144500' => 'ppe', 'Prupe.2G195700' => 'ppe', 'Prupe.2G209800' => 'ppe', 'Prupe.5G080000' => 'ppe', 'Prupe.6G257900' => 'ppe', 'Psat3g001160' => 'psa', 'Psat6g181880' => 'psa', 'Psat7g233720' => 'psa', 'PSO063G7587' => 'pso', 'PSO339G2145' => 'pso', 'PSO339G3369' => 'pso', 'PSO478G2747' => 'pso', 'PSO513G0140' => 'pso', 'PSO782G1614' => 'pso', 'PSO782G4889' => 'pso', 'PSO782G5485' => 'pso', 'PSO801G0241' => 'pso', 'QL07p048854' => 'qlo', 'QL08p046745' => 'qlo', 'QL08p052606' => 'qlo', 'QL08p053414' => 'qlo', 'QL08p054868' => 'qlo', 'RcHm_v2.0_Chr1g0350251' => 'rch', 'RcHm_v2.0_Chr1g0360851' => 'rch', 'RcHm_v2.0_Chr1g0362791' => 'rch', 'RcHm_v2.0_Chr3g0466281' => 'rch', 'RcHm_v2.0_Chr7g0201481' => 'rch', 'Rhsim01G0148600' => 'rsi', 'Rhsim05G0194400' => 'rsi', 'Rhsim07G0000700' => 'rsi', 'Rhsim07G0000800' => 'rsi', 'Rhsim07G0027900' => 'rsi', 'Rhsim09G0149500' => 'rsi', 'RhsimUnG0186900' => 'rsi', 'Sabra01G0089900' => 'sbr', 'Sabra02G0114700' => 'sbr', 'Sabra02G0116300' => 'sbr', 'Sabra03G0080100' => 'sbr', 'Sabra08G0024300' => 'sbr', 'Sabra10G0174300' => 'sbr', 'Sabra14G0048900' => 'sbr', 'Sabra14G0076500' => 'sbr', 'SalBow5G2513' => 'sbo', 'Sc01g0002300' => 'sci', 'Sc01g0004450' => 'sci', 'Sc06g0001680' => 'sci', 'Sc23g0003580' => 'sci', 'Sed0000913' => 'sed', 'Sed0001655' => 'sed', 'Sed0007745' => 'sed', 'Sed0010951' => 'sed', 'Sed0017599' => 'sed', 'Sed0021405' => 'sed', 'Sed0022810' => 'sed', 'SEGI_07099' => 'sgi', 'SEGI_11931' => 'sgi', 'SEGI_13187' => 'sgi', 'SEGI_29958' => 'sgi', 'SEGI_36351' => 'sgi', 'SGA_v2.0_scaffold126G33770' => 'sas', 'SGA_v2.0_scaffold153G37003' => 'sas', 'SGA_v2.0_scaffold2G01359' => 'sas', 'SGA_v2.0_scaffold5G03064' => 'sas', 'SGA_v2.0_scaffold95G28903' => 'sas', 'SHI12701' => 'shi', 'SHI26410' => 'shi', 'SHI38997' => 'shi', 'SHI53759' => 'shi', 'SHI53886' => 'shi', 'SHI54714' => 'shi', 'SMO011G0041' => 'smo', 'SMO146G0251' => 'smo', 'SMO160G0004' => 'smo', 'SMO174G0057' => 'smo', 'SMO244G0089' => 'smo', 'SMO296G0011' => 'smo', 'Solyc01g091280.3' => 'sly', 'Solyc05g047610.3' => 'sly', 'Solyc05g047640.3' => 'sly', 'Solyc05g055630.3' => 'sly', 'Solyc10g018160.2' => 'sly', 'Solyc10g084820.2' => 'sly', 'Solyc10g086565.2' => 'sly', 'Sopen01g037030' => 'spe', 'Sopen05g027920' => 'spe', 'Sopen05g034070' => 'spe', 'Sopen10g007260' => 'spe', 'Sopen10g034260' => 'spe', 'Sopen10g035950' => 'spe', 'Sp3g07710' => 'spa', 'Sp4g27420' => 'spa', 'Sp5g02450' => 'spa', 'Sp6g01280' => 'spa', 'Sp6g38480' => 'spa', 'Sp7g20780' => 'spa', 'TAR374G1413' => 'tar', 'TAR623G1777' => 'tar', 'TAR629G2370' => 'tar', 'TAR633G1759' => 'tar', 'TAR636G3387' => 'tar', 'THA.LOC104802447' => 'tha', 'THA.LOC104813916' => 'tha', 'THA.LOC104816423' => 'tha', 'THA.LOC104817246' => 'tha', 'THA.LOC104825895' => 'tha', 'Thecc.01G335200' => 'tca', 'Thecc.01G377400' => 'tca', 'Thecc.03G262200' => 'tca', 'Thecc.05G036800' => 'tca', 'Thecc.10G080500' => 'tca', 'Thecc.10G080800' => 'tca', 'Thhalv10001560m.g' => 'esa', 'Thhalv10006120m.g' => 'esa', 'Thhalv10014375m.g' => 'esa', 'Thhalv10021264m.g' => 'esa', 'Thhalv10028856m.g' => 'esa', 'TPR.G1914' => 'tpr', 'TPR.G4757' => 'tpr', 'TPR.G5595' => 'tpr', 'TWI14G0952' => 'twi', 'TWI14G1307' => 'twi', 'TWI38G2143' => 'twi', 'TWI59G0826' => 'twi', 'TWI77G0527' => 'twi', 'TWI81G0150' => 'twi', 'unitig_21.g21018' => 'ugi', 'unitig_26.g9725' => 'ugi', 'unitig_744.g24653' => 'ugi', 'unitig_749.g13778' => 'ugi', 'unitig_899.g15035' => 'ugi', 'vmacro04296' => 'vma', 'vmacro04852' => 'vma', 'vmacro13404' => 'vma', 'vmacro20169' => 'vma', 'vmacro21014' => 'vma', 'VMungo0331G0237' => 'vmu', 'VMungo0331G0706' => 'vmu', 'VMungo0331G1361' => 'vmu', 'VMungo0331G1489' => 'vmu', 'VMungo0540G1037' => 'vmu', 'VMungo0720G2487' => 'vmu', 'VMungo0720G2721' => 'vmu', 'Zm00001eb086860' => 'zma', 'Zm00001eb104760' => 'zma', 'Zm00001eb148220' => 'zma', 'Zm00001eb259030' => 'zma', 'Zm00001eb289590' => 'zma', 'Zm00001eb420150' => 'zma' ), 'gf_id' => 'HOM05D000968', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000968' ), 'data_identifier' => 'HOM05D000968', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000968', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p31690' => 'bna', 'A03p36040' => 'bna', 'A03p53730' => 'bna', 'A04p01410' => 'bna', 'A05p05420' => 'bna', 'A05p39630' => 'bna', 'A05p39640' => 'bna', 'A09p00970' => 'bna', 'A09p53060' => 'bna', 'A10p31890' => 'bna', 'Aa31LG10G15040' => 'aar', 'Aa31LG1G21090' => 'aar', 'Aa31LG1G26900' => 'aar', 'Aa31LG3G1820' => 'aar', 'Aa31LG5G1100' => 'aar', 'Aa31LG6G4740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2265' => 'aag', 'Actinidia07998' => 'ach', 'Actinidia11266' => 'ach', 'Actinidia12682' => 'ach', 'Actinidia26479' => 'ach', 'Actinidia31406' => 'ach', 'Actinidia32437' => 'ach', 'Actinidia38862' => 'ach', 'Ah.05g174230' => 'amhyb', 'Ah.05g179070' => 'amhyb', 'Ah.05g179090' => 'amhyb', 'Ah.12g059950' => 'amhyb', 'AL3G20480' => 'aly', 'AL4G44520' => 'aly', 'AL5G43110' => 'aly', 'AL6G13890' => 'aly', 'AL6G52620' => 'aly', 'AL7G30830' => 'aly', 'Aqoxy1G00899' => 'aox', 'Aqoxy5G04333' => 'aox', 'Aqoxy7G00641' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3IZ0NN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4EF6AW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W9P8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79GA3M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C43NQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFCU6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G95YVJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCHK29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LU1UG8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX91RN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGB4B1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8DA0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9H7JI' => 'arhy', 'AT3G09320' => 'ath', 'AT3G60800' => 'ath', 'AT4G00840' => 'ath', 'AT4G22750' => 'ath', 'AT5G04270' => 'ath', 'ATR0090G003' => 'atr', 'ATR0559G349' => 'atr', 'ATR0680G261' => 'atr', 'ATR0810G048' => 'atr', 'Atru.chr12.831' => 'acertr', 'Atru.chr5.303' => 'acertr', 'Atru.chr5.748' => 'acertr', 'Atru.chr8.1999' => 'acertr', 'Atru.chr9.1436' => 'acertr', 'AUR62004211' => 'cqu', 'AUR62004548' => 'cqu', 'AUR62013637' => 'cqu', 'AUR62022662' => 'cqu', 'AUR62025777' => 'cqu', 'AUR62042386' => 'cqu', 'BcaB01g02310' => 'bca', 'BcaB01g06062' => 'bca', 'BcaB02g08975' => 'bca', 'BcaB02g08980' => 'bca', 'BcaC01g04228' => 'bca', 'BcaC01g06830' => 'bca', 'BcaC02g10186' => 'bca', 'BcaC02g12214' => 'bca', 'BcaC04g24101' => 'bca', 'BcaC05g29520' => 'bca', 'BcaC05g29661' => 'bca', 'BcaC06g32130' => 'bca', 'BcaC06g32131' => 'bca', 'BcaC07g40601' => 'bca', 'BcaC07g42641' => 'bca', 'BcaNung01038' => 'bca', 'BcaNung01676' => 'bca', 'BcaNung02480' => 'bca', 'BcaNung07376' => 'bca', 'BolC3t16146H' => 'bol', 'BolC3t16637H' => 'bol', 'BolC4t22257H' => 'bol', 'BolC4t24728H' => 'bol', 'BolC5t34517H' => 'bol', 'BolC7t45703H' => 'bol', 'BolC8t51166H' => 'bol', 'BolC9t53038H' => 'bol', 'BolC9t60000H' => 'bol', 'BraA01t01345Z' => 'bra', 'BraA01t01346Z' => 'bra', 'BraA01t01348Z' => 'bra', 'BraA03t12347Z' => 'bra', 'BraA03t12775Z' => 'bra', 'BraA03t14439Z' => 'bra', 'BraA04t15860Z' => 'bra', 'BraA05t19511Z' => 'bra', 'BraA05t22746Z' => 'bra', 'BraA09t35767Z' => 'bra', 'BraA09t40732Z' => 'bra', 'BraA10t45233Z' => 'bra', 'C03p38720' => 'bna', 'C03p43680' => 'bna', 'C04p06350' => 'bna', 'C04p31800' => 'bna', 'C05p58680' => 'bna', 'C07p52110' => 'bna', 'C08p35760' => 'bna', 'C09p01050' => 'bna', 'C09p72600' => 'bna', 'CAN.G106.2' => 'can', 'CAN.G1482.1' => 'can', 'CAN.G324.12' => 'can', 'CAN.G388.20' => 'can', 'CAN.G412.7' => 'can', 'CAN.G694.32' => 'can', 'CAN.G92.12' => 'can', 'CANSAT11G2353' => 'cansat', 'CANSAT21G1398' => 'cansat', 'CANSAT56G2456' => 'cansat', 'CANSAT56G3031' => 'cansat', 'CANSAT56G4539' => 'cansat', 'CARHR083680' => 'chi', 'CARHR171190' => 'chi', 'CARHR209010' => 'chi', 'CARHR229680' => 'chi', 'CARHR249490' => 'chi', 'Carub.0003s0844' => 'cru', 'Carub.0005s2755' => 'cru', 'Carub.0006s0322' => 'cru', 'Carub.0006s3586' => 'cru', 'Carub.0007s1855' => 'cru', 'Ca_07808_v3' => 'car', 'Ca_09535_v3' => 'car', 'Ca_10548_v3' => 'car', 'Ca_19913_v3' => 'car', 'Ca_19916_v3' => 'car', 'Ca_19975_v3' => 'car', 'CBR_g22876' => 'cbr', 'CBR_g22879' => 'cbr', 'CBR_g38491' => 'cbr', 'CBR_g54185' => 'cbr', 'CBR_g54190' => 'cbr', 'Cc02_g11020' => 'ccan', 'Cc02_g23920' => 'ccan', 'Cc02_g39860' => 'ccan', 'Cc02_g39870' => 'ccan', 'Cc03_g06760' => 'ccan', 'Cc06_g02450' => 'ccan', 'Cc09_g09450' => 'ccan', 'CDE02G1959' => 'cde', 'CDE04G0600' => 'cde', 'CDE07G1996' => 'cde', 'CDE07G2078' => 'cde', 'CDE11G0611' => 'cde', 'Cfa001683' => 'cfa', 'Cfa001734' => 'cfa', 'Cfa001737' => 'cfa', 'Cfa003751' => 'cfa', 'Cfa012019' => 'cfa', 'Cfa017353' => 'cfa', 'Cfa017732' => 'cfa', 'Cfa022464' => 'cfa', 'Ciclev10012400m.g' => 'ccl', 'Ciclev10021242m.g' => 'ccl', 'Ciclev10021302m.g' => 'ccl', 'Ciclev10021463m.g' => 'ccl', 'Ciclev10032359m.g' => 'ccl', 'CiPaw.01G081000' => 'cil', 'CiPaw.01G262500' => 'cil', 'CiPaw.01G269800' => 'cil', 'CiPaw.02G168400' => 'cil', 'CiPaw.05G119500' => 'cil', 'CiPaw.11G147300' => 'cil', 'ClCG01G003630' => 'cla', 'ClCG05G000510' => 'cla', 'ClCG05G002300' => 'cla', 'ClCG08G007650' => 'cla', 'ClCG10G021250' => 'cla', 'COL.COLO4_06218' => 'col', 'COL.COLO4_12538' => 'col', 'COL.COLO4_14775' => 'col', 'COL.COLO4_23875' => 'col', 'Cpa.g.sc141.16' => 'cpa', 'Cpa.g.sc169.16' => 'cpa', 'Cpa.g.sc244.4' => 'cpa', 'Cpa.g.sc244.5' => 'cpa', 'Cpa.g.sc29.87' => 'cpa', 'Cpa.g.sc53.115' => 'cpa', 'Cre03.g207502' => 'cre', 'Cre06.g277000' => 'cre', 'Cre09.g394050' => 'cre', 'CsaV3_3G007680' => 'csa', 'CsaV3_3G009710' => 'csa', 'CsaV3_3G034790' => 'csa', 'CsaV3_5G003750' => 'csa', 'CsaV3_6G036620' => 'csa', 'CSS0002288' => 'camsi', 'CSS0011250' => 'camsi', 'CSS0021619' => 'camsi', 'CSS0046701' => 'camsi', 'DCAR_006420' => 'dca', 'DCAR_006865' => 'dca', 'DCAR_008558' => 'dca', 'DCAR_028754' => 'dca', 'DCAR_028755' => 'dca', 'Dinv31218' => 'din', 'Dinv32371' => 'din', 'Dinv34250' => 'din', 'Dinv37156' => 'din', 'Dinv43704' => 'din', 'Duzib093G1811' => 'dzi', 'Duzib106G1622' => 'dzi', 'Duzib114G0504' => 'dzi', 'Duzib128G0338' => 'dzi', 'Duzib128G1577' => 'dzi', 'Duzib133G0104' => 'dzi', 'Duzib133G1080' => 'dzi', 'Duzib138G0324' => 'dzi', 'Duzib138G0394' => 'dzi', 'Duzib205G0122' => 'dzi', 'Duzib268G1020' => 'dzi', 'Duzib268G1359' => 'dzi', 'ECA232G3929' => 'eca', 'ECA236G2210' => 'eca', 'ECA236G2287' => 'eca', 'ECA240G4568' => 'eca', 'ECA247G0894' => 'eca', 'EL10Ac1g00200' => 'bvu', 'EL10Ac1g00886' => 'bvu', 'EL10As1g23091' => 'bvu', 'EL10As1g23092' => 'bvu', 'Eucgr.A01284' => 'egr', 'Eucgr.A01285' => 'egr', 'Eucgr.D02456' => 'egr', 'Eucgr.E00018' => 'egr', 'Eucgr.E01439' => 'egr', 'Eucgr.G02859' => 'egr', 'FAN01G0168' => 'fan', 'FAN01G0453' => 'fan', 'FAN01G2761' => 'fan', 'FAN02G1239' => 'fan', 'FAN03G0645' => 'fan', 'FAN03G2707' => 'fan', 'FAN03G2978' => 'fan', 'FAN04G0227' => 'fan', 'FAN06G0091' => 'fan', 'FAN06G1418' => 'fan', 'FAN06G1512' => 'fan', 'FAN06G1986' => 'fan', 'FAN06G2905' => 'fan', 'FAN06G4325' => 'fan', 'FAN08G0033' => 'fan', 'FAN09G0642' => 'fan', 'FAN10G1763' => 'fan', 'FAN10G2026' => 'fan', 'FAN10G2513' => 'fan', 'FAN10G3402' => 'fan', 'FAN10G3564' => 'fan', 'FAN10G3987' => 'fan', 'FAN13G1490' => 'fan', 'FAN14G5857' => 'fan', 'FAN18G1188' => 'fan', 'FvH4_5g00750' => 'fve', 'FvH4_6g13410' => 'fve', 'FvH4_7g11740' => 'fve', 'FvH4_7g17410' => 'fve', 'FvH4_7g18860' => 'fve', 'Glyma.01G099100' => 'gma', 'Glyma.01G142300' => 'gma', 'Glyma.03G025500' => 'gma', 'Glyma.03G069700' => 'gma', 'Glyma.03G260000' => 'gma', 'Glyma.09G269800' => 'gma', 'Glyma.10G208700' => 'gma', 'Glyma.18G220400' => 'gma', 'Glyma.20G182000' => 'gma', 'Gohir.A01G221726' => 'ghi', 'Gohir.A07G134600' => 'ghi', 'Gohir.A07G146000' => 'ghi', 'Gohir.A08G173900' => 'ghi', 'Gohir.A09G194900' => 'ghi', 'Gohir.A10G204100' => 'ghi', 'Gohir.A11G080600' => 'ghi', 'Gohir.A11G327500' => 'ghi', 'Gohir.A12G101800' => 'ghi', 'Gohir.D01G211200' => 'ghi', 'Gohir.D07G139200' => 'ghi', 'Gohir.D07G152100' => 'ghi', 'Gohir.D08G192600' => 'ghi', 'Gohir.D09G189200' => 'ghi', 'Gohir.D10G212000' => 'ghi', 'Gohir.D11G085200' => 'ghi', 'Gohir.D11G346400' => 'ghi', 'Gohir.D12G104800' => 'ghi', 'Gorai.001G151300' => 'gra', 'Gorai.001G174100' => 'gra', 'Gorai.002G257000' => 'gra', 'Gorai.004G202600' => 'gra', 'Gorai.007G090900' => 'gra', 'Gorai.007G376700' => 'gra', 'Gorai.008G114100' => 'gra', 'Gorai.011G237900' => 'gra', 'GSVIVG01005450001' => 'vvi', 'GSVIVG01016232001' => 'vvi', 'GSVIVG01026157001' => 'vvi', 'GSVIVG01027419001' => 'vvi', 'GSVIVG01027631001' => 'vvi', 'GSVIVG01034143001' => 'vvi', 'HanXRQChr03g0093921' => 'han', 'HanXRQChr04g0120001' => 'han', 'HanXRQChr04g0122561' => 'han', 'HanXRQChr09g0246851' => 'han', 'HanXRQChr10g0293311' => 'han', 'HanXRQChr13g0425231' => 'han', 'HanXRQChr16g0532571' => 'han', 'Haze_09050' => 'cav', 'Haze_15715' => 'cav', 'Haze_15716' => 'cav', 'Haze_16803' => 'cav', 'Haze_16850' => 'cav', 'Hma1.2p1_0301F.1_g118655' => 'hma', 'Hma1.2p1_0309F.1_g120590' => 'hma', 'Hma1.2p1_0936F.1_g238900' => 'hma', 'Hma1.2p1_3552F.1_g336740' => 'hma', 'HPP92_003520' => 'vpl', 'HPP92_006628' => 'vpl', 'HPP92_006645' => 'vpl', 'HPP92_014669' => 'vpl', 'HPP92_015077' => 'vpl', 'Hund16742' => 'sun', 'Hund17022' => 'sun', 'Lalb_Chr02g0152131' => 'lal', 'Lalb_Chr05g0225371' => 'lal', 'Lalb_Chr07g0189841' => 'lal', 'Lalb_Chr07g0192961' => 'lal', 'Lalb_Chr12g0208221' => 'lal', 'Lalb_Chr13g0291211' => 'lal', 'Lalb_Chr13g0291781' => 'lal', 'Lalb_Chr18g0044651' => 'lal', 'Lalb_Chr21g0313731' => 'lal', 'Lj1g0022533' => 'lja', 'Lj2A18T50' => 'lonja', 'Lj2A92G93' => 'lonja', 'Lj3A965T73' => 'lonja', 'Lj3g0000673' => 'lja', 'Lj3g0002666' => 'lja', 'Lj4g0016985' => 'lja', 'Lj5g0003625' => 'lja', 'Lj7A529G36' => 'lonja', 'Lj9A569T49' => 'lonja', 'Lj9A604T63' => 'lonja', 'Lsat_1_v5_gn_3_132060' => 'lsa', 'Lsat_1_v5_gn_4_68941' => 'lsa', 'Lsat_1_v5_gn_5_95580' => 'lsa', 'Lsat_1_v5_gn_7_161' => 'lsa', 'Lsat_1_v5_gn_7_7041' => 'lsa', 'Lsat_1_v5_gn_9_33481' => 'lsa', 'Lsat_1_v5_gn_9_68260' => 'lsa', 'Manes.01G073100' => 'mes', 'Manes.01G266300' => 'mes', 'Manes.02G033300' => 'mes', 'Manes.05G017900' => 'mes', 'Manes.05G046100' => 'mes', 'Manes.08G080900' => 'mes', 'Manes.10G049400' => 'mes', 'Mapoly0009s0186' => 'mpo', 'Mapoly0036s0118' => 'mpo', 'Mapoly0101s0046' => 'mpo', 'MBI04_g30218_MAGBIO' => 'mbi', 'MBI04_g35564_MAGBIO' => 'mbi', 'MBI12_g34011_MAGBIO' => 'mbi', 'MBI14_g04655_MAGBIO' => 'mbi', 'MCO07G653' => 'mco', 'MCO10G173' => 'mco', 'MD01G1087100' => 'mdo', 'MD01G1104200' => 'mdo', 'MD02G1205100' => 'mdo', 'MD04G1079200' => 'mdo', 'MD04G1131400' => 'mdo', 'MD07G1121600' => 'mdo', 'MD07G1157300' => 'mdo', 'MD07G1171000' => 'mdo', 'MD12G1144500' => 'mdo', 'Medtr1g094610' => 'mtr', 'Medtr4g021795' => 'mtr', 'Medtr4g023760' => 'mtr', 'Medtr7g118050' => 'mtr', 'MELO3C005582.2' => 'cme', 'MELO3C005989.2' => 'cme', 'MELO3C006192.2' => 'cme', 'MELO3C009248.2' => 'cme', 'MELO3C019817.2' => 'cme', 'Migut.B01625' => 'egut', 'Migut.B01915' => 'egut', 'Migut.F01721' => 'egut', 'Migut.J00314' => 'egut', 'MSTRG.20742' => 'ama', 'MSTRG.8134' => 'ama', 'Nitab4.5_0000096g0010' => 'nta', 'Nitab4.5_0000202g0030' => 'nta', 'Nitab4.5_0000216g0370' => 'nta', 'Nitab4.5_0000457g0230' => 'nta', 'Nitab4.5_0001702g0170' => 'nta', 'Nitab4.5_0003607g0010' => 'nta', 'Nitab4.5_0004917g0020' => 'nta', 'Nitab4.5_0007059g0010' => 'nta', 'Nitab4.5_0007184g0010' => 'nta', 'Nitab4.5_0007346g0020' => 'nta', 'Nn1g00410' => 'nnu', 'Nn1g01252' => 'nnu', 'Nn2g11168' => 'nnu', 'Nn2g13403' => 'nnu', 'Nn2g13760' => 'nnu', 'Nn4g26380' => 'nnu', 'Oeu000806.2' => 'oeu', 'Oeu005788.1' => 'oeu', 'Oeu006900.3' => 'oeu', 'Oeu007797.1' => 'oeu', 'Oeu011932.1' => 'oeu', 'Oeu022739.1' => 'oeu', 'Oeu037918.1' => 'oeu', 'Oeu055490.2' => 'oeu', 'Os01g0844400' => 'osa', 'Os02g0819100' => 'osa', 'Os03g0804300' => 'osa', 'Os05g0458000' => 'osa', 'Os07g0467800' => 'osa', 'Os12g0602200' => 'osa', 'Peaxi162Scf00013g03444' => 'pax', 'Peaxi162Scf00094g01120' => 'pax', 'Peaxi162Scf00191g01211' => 'pax', 'Peaxi162Scf00238g01110' => 'pax', 'Peaxi162Scf00330g00719' => 'pax', 'Peaxi162Scf00627g00018' => 'pax', 'PGR031G2686' => 'pgr', 'PGR042G0809' => 'pgr', 'PGR142G0193' => 'pgr', 'PGSC0003DMG400011066' => 'stu', 'PGSC0003DMG400012041' => 'stu', 'PGSC0003DMG400013678' => 'stu', 'PGSC0003DMG400023477' => 'stu', 'PGSC0003DMG400025956' => 'stu', 'PGSC0003DMG401019151' => 'stu', 'Phvul.006G116400' => 'pvu', 'Phvul.007G097300' => 'pvu', 'Phvul.010G015000' => 'pvu', 'Phvul.010G083900' => 'pvu', 'Potri.001G117100' => 'ptr', 'Potri.002G147300' => 'ptr', 'Potri.003G115600' => 'ptr', 'Potri.006G087400' => 'ptr', 'Potri.010G226100' => 'ptr', 'Potri.014G069200' => 'ptr', 'Potri.014G104000' => 'ptr', 'Potri.016G100200' => 'ptr', 'Pp3c10_20450' => 'ppa', 'Pp3c1_42400' => 'ppa', 'Pp3c3_24390' => 'ppa', 'Pp3c3_2860' => 'ppa', 'PRCOL_00003193' => 'pco', 'Prupe.2G144500' => 'ppe', 'Prupe.2G195700' => 'ppe', 'Prupe.2G209800' => 'ppe', 'Prupe.5G080000' => 'ppe', 'Prupe.6G257900' => 'ppe', 'Psat3g001160' => 'psa', 'Psat6g181880' => 'psa', 'Psat7g233720' => 'psa', 'PSO063G7587' => 'pso', 'PSO339G2145' => 'pso', 'PSO339G3369' => 'pso', 'PSO478G2747' => 'pso', 'PSO513G0140' => 'pso', 'PSO782G1614' => 'pso', 'PSO782G4889' => 'pso', 'PSO782G5485' => 'pso', 'PSO801G0241' => 'pso', 'QL07p048854' => 'qlo', 'QL08p046745' => 'qlo', 'QL08p052606' => 'qlo', 'QL08p053414' => 'qlo', 'QL08p054868' => 'qlo', 'RcHm_v2.0_Chr1g0350251' => 'rch', 'RcHm_v2.0_Chr1g0360851' => 'rch', 'RcHm_v2.0_Chr1g0362791' => 'rch', 'RcHm_v2.0_Chr3g0466281' => 'rch', 'RcHm_v2.0_Chr7g0201481' => 'rch', 'Rhsim01G0148600' => 'rsi', 'Rhsim05G0194400' => 'rsi', 'Rhsim07G0000700' => 'rsi', 'Rhsim07G0000800' => 'rsi', 'Rhsim07G0027900' => 'rsi', 'Rhsim09G0149500' => 'rsi', 'RhsimUnG0186900' => 'rsi', 'Sabra01G0089900' => 'sbr', 'Sabra02G0114700' => 'sbr', 'Sabra02G0116300' => 'sbr', 'Sabra03G0080100' => 'sbr', 'Sabra08G0024300' => 'sbr', 'Sabra10G0174300' => 'sbr', 'Sabra14G0048900' => 'sbr', 'Sabra14G0076500' => 'sbr', 'SalBow5G2513' => 'sbo', 'Sc01g0002300' => 'sci', 'Sc01g0004450' => 'sci', 'Sc06g0001680' => 'sci', 'Sc23g0003580' => 'sci', 'Sed0000913' => 'sed', 'Sed0001655' => 'sed', 'Sed0007745' => 'sed', 'Sed0010951' => 'sed', 'Sed0017599' => 'sed', 'Sed0021405' => 'sed', 'Sed0022810' => 'sed', 'SEGI_07099' => 'sgi', 'SEGI_11931' => 'sgi', 'SEGI_13187' => 'sgi', 'SEGI_29958' => 'sgi', 'SEGI_36351' => 'sgi', 'SGA_v2.0_scaffold126G33770' => 'sas', 'SGA_v2.0_scaffold153G37003' => 'sas', 'SGA_v2.0_scaffold2G01359' => 'sas', 'SGA_v2.0_scaffold5G03064' => 'sas', 'SGA_v2.0_scaffold95G28903' => 'sas', 'SHI12701' => 'shi', 'SHI26410' => 'shi', 'SHI38997' => 'shi', 'SHI53759' => 'shi', 'SHI53886' => 'shi', 'SHI54714' => 'shi', 'SMO011G0041' => 'smo', 'SMO146G0251' => 'smo', 'SMO160G0004' => 'smo', 'SMO174G0057' => 'smo', 'SMO244G0089' => 'smo', 'SMO296G0011' => 'smo', 'Solyc01g091280.3' => 'sly', 'Solyc05g047610.3' => 'sly', 'Solyc05g047640.3' => 'sly', 'Solyc05g055630.3' => 'sly', 'Solyc10g018160.2' => 'sly', 'Solyc10g084820.2' => 'sly', 'Solyc10g086565.2' => 'sly', 'Sopen01g037030' => 'spe', 'Sopen05g027920' => 'spe', 'Sopen05g034070' => 'spe', 'Sopen10g007260' => 'spe', 'Sopen10g034260' => 'spe', 'Sopen10g035950' => 'spe', 'Sp3g07710' => 'spa', 'Sp4g27420' => 'spa', 'Sp5g02450' => 'spa', 'Sp6g01280' => 'spa', 'Sp6g38480' => 'spa', 'Sp7g20780' => 'spa', 'TAR374G1413' => 'tar', 'TAR623G1777' => 'tar', 'TAR629G2370' => 'tar', 'TAR633G1759' => 'tar', 'TAR636G3387' => 'tar', 'THA.LOC104802447' => 'tha', 'THA.LOC104813916' => 'tha', 'THA.LOC104816423' => 'tha', 'THA.LOC104817246' => 'tha', 'THA.LOC104825895' => 'tha', 'Thecc.01G335200' => 'tca', 'Thecc.01G377400' => 'tca', 'Thecc.03G262200' => 'tca', 'Thecc.05G036800' => 'tca', 'Thecc.10G080500' => 'tca', 'Thecc.10G080800' => 'tca', 'Thhalv10001560m.g' => 'esa', 'Thhalv10006120m.g' => 'esa', 'Thhalv10014375m.g' => 'esa', 'Thhalv10021264m.g' => 'esa', 'Thhalv10028856m.g' => 'esa', 'TPR.G1914' => 'tpr', 'TPR.G4757' => 'tpr', 'TPR.G5595' => 'tpr', 'TWI14G0952' => 'twi', 'TWI14G1307' => 'twi', 'TWI38G2143' => 'twi', 'TWI59G0826' => 'twi', 'TWI77G0527' => 'twi', 'TWI81G0150' => 'twi', 'unitig_21.g21018' => 'ugi', 'unitig_26.g9725' => 'ugi', 'unitig_744.g24653' => 'ugi', 'unitig_749.g13778' => 'ugi', 'unitig_899.g15035' => 'ugi', 'vmacro04296' => 'vma', 'vmacro04852' => 'vma', 'vmacro13404' => 'vma', 'vmacro20169' => 'vma', 'vmacro21014' => 'vma', 'VMungo0331G0237' => 'vmu', 'VMungo0331G0706' => 'vmu', 'VMungo0331G1361' => 'vmu', 'VMungo0331G1489' => 'vmu', 'VMungo0540G1037' => 'vmu', 'VMungo0720G2487' => 'vmu', 'VMungo0720G2721' => 'vmu', 'Zm00001eb086860' => 'zma', 'Zm00001eb104760' => 'zma', 'Zm00001eb148220' => 'zma', 'Zm00001eb259030' => 'zma', 'Zm00001eb289590' => 'zma', 'Zm00001eb420150' => 'zma' ) $gf_id = 'HOM05D000968' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000968' ) $data_identifier = 'HOM05D000968' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 19, 'bol' => (int) 9, 'bra' => (int) 12, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 5, 'ccan' => (int) 7, 'cde' => (int) 5, 'cfa' => (int) 8, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 4, 'dca' => (int) 5, 'din' => (int) 5, 'dzi' => (int) 12, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 25, 'fve' => (int) 5, 'gma' => (int) 9, 'ghi' => (int) 18, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 7, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 5, 'sun' => (int) 2, 'lal' => (int) 9, 'lja' => (int) 5, 'lonja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 9, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 2, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 3, 'stu' => (int) 6, 'pvu' => (int) 4, 'ptr' => (int) 8, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 3, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 1, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 5, 'sas' => (int) 5, 'shi' => (int) 6, 'smo' => (int) 6, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 3, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420150' $species_info = array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ) $local_species = 'cme' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000968', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p31690' => 'bna', 'A03p36040' => 'bna', 'A03p53730' => 'bna', 'A04p01410' => 'bna', 'A05p05420' => 'bna', 'A05p39630' => 'bna', 'A05p39640' => 'bna', 'A09p00970' => 'bna', 'A09p53060' => 'bna', 'A10p31890' => 'bna', 'Aa31LG10G15040' => 'aar', 'Aa31LG1G21090' => 'aar', 'Aa31LG1G26900' => 'aar', 'Aa31LG3G1820' => 'aar', 'Aa31LG5G1100' => 'aar', 'Aa31LG6G4740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2265' => 'aag', 'Actinidia07998' => 'ach', 'Actinidia11266' => 'ach', 'Actinidia12682' => 'ach', 'Actinidia26479' => 'ach', 'Actinidia31406' => 'ach', 'Actinidia32437' => 'ach', 'Actinidia38862' => 'ach', 'Ah.05g174230' => 'amhyb', 'Ah.05g179070' => 'amhyb', 'Ah.05g179090' => 'amhyb', 'Ah.12g059950' => 'amhyb', 'AL3G20480' => 'aly', 'AL4G44520' => 'aly', 'AL5G43110' => 'aly', 'AL6G13890' => 'aly', 'AL6G52620' => 'aly', 'AL7G30830' => 'aly', 'Aqoxy1G00899' => 'aox', 'Aqoxy5G04333' => 'aox', 'Aqoxy7G00641' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3IZ0NN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4EF6AW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W9P8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79GA3M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C43NQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFCU6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G95YVJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCHK29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LU1UG8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX91RN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGB4B1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8DA0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9H7JI' => 'arhy', 'AT3G09320' => 'ath', 'AT3G60800' => 'ath', 'AT4G00840' => 'ath', 'AT4G22750' => 'ath', 'AT5G04270' => 'ath', 'ATR0090G003' => 'atr', 'ATR0559G349' => 'atr', 'ATR0680G261' => 'atr', 'ATR0810G048' => 'atr', 'Atru.chr12.831' => 'acertr', 'Atru.chr5.303' => 'acertr', 'Atru.chr5.748' => 'acertr', 'Atru.chr8.1999' => 'acertr', 'Atru.chr9.1436' => 'acertr', 'AUR62004211' => 'cqu', 'AUR62004548' => 'cqu', 'AUR62013637' => 'cqu', 'AUR62022662' => 'cqu', 'AUR62025777' => 'cqu', 'AUR62042386' => 'cqu', 'BcaB01g02310' => 'bca', 'BcaB01g06062' => 'bca', 'BcaB02g08975' => 'bca', 'BcaB02g08980' => 'bca', 'BcaC01g04228' => 'bca', 'BcaC01g06830' => 'bca', 'BcaC02g10186' => 'bca', 'BcaC02g12214' => 'bca', 'BcaC04g24101' => 'bca', 'BcaC05g29520' => 'bca', 'BcaC05g29661' => 'bca', 'BcaC06g32130' => 'bca', 'BcaC06g32131' => 'bca', 'BcaC07g40601' => 'bca', 'BcaC07g42641' => 'bca', 'BcaNung01038' => 'bca', 'BcaNung01676' => 'bca', 'BcaNung02480' => 'bca', 'BcaNung07376' => 'bca', 'BolC3t16146H' => 'bol', 'BolC3t16637H' => 'bol', 'BolC4t22257H' => 'bol', 'BolC4t24728H' => 'bol', 'BolC5t34517H' => 'bol', 'BolC7t45703H' => 'bol', 'BolC8t51166H' => 'bol', 'BolC9t53038H' => 'bol', 'BolC9t60000H' => 'bol', 'BraA01t01345Z' => 'bra', 'BraA01t01346Z' => 'bra', 'BraA01t01348Z' => 'bra', 'BraA03t12347Z' => 'bra', 'BraA03t12775Z' => 'bra', 'BraA03t14439Z' => 'bra', 'BraA04t15860Z' => 'bra', 'BraA05t19511Z' => 'bra', 'BraA05t22746Z' => 'bra', 'BraA09t35767Z' => 'bra', 'BraA09t40732Z' => 'bra', 'BraA10t45233Z' => 'bra', 'C03p38720' => 'bna', 'C03p43680' => 'bna', 'C04p06350' => 'bna', 'C04p31800' => 'bna', 'C05p58680' => 'bna', 'C07p52110' => 'bna', 'C08p35760' => 'bna', 'C09p01050' => 'bna', 'C09p72600' => 'bna', 'CAN.G106.2' => 'can', 'CAN.G1482.1' => 'can', 'CAN.G324.12' => 'can', 'CAN.G388.20' => 'can', 'CAN.G412.7' => 'can', 'CAN.G694.32' => 'can', 'CAN.G92.12' => 'can', 'CANSAT11G2353' => 'cansat', 'CANSAT21G1398' => 'cansat', 'CANSAT56G2456' => 'cansat', 'CANSAT56G3031' => 'cansat', 'CANSAT56G4539' => 'cansat', 'CARHR083680' => 'chi', 'CARHR171190' => 'chi', 'CARHR209010' => 'chi', 'CARHR229680' => 'chi', 'CARHR249490' => 'chi', 'Carub.0003s0844' => 'cru', 'Carub.0005s2755' => 'cru', 'Carub.0006s0322' => 'cru', 'Carub.0006s3586' => 'cru', 'Carub.0007s1855' => 'cru', 'Ca_07808_v3' => 'car', 'Ca_09535_v3' => 'car', 'Ca_10548_v3' => 'car', 'Ca_19913_v3' => 'car', 'Ca_19916_v3' => 'car', 'Ca_19975_v3' => 'car', 'CBR_g22876' => 'cbr', 'CBR_g22879' => 'cbr', 'CBR_g38491' => 'cbr', 'CBR_g54185' => 'cbr', 'CBR_g54190' => 'cbr', 'Cc02_g11020' => 'ccan', 'Cc02_g23920' => 'ccan', 'Cc02_g39860' => 'ccan', 'Cc02_g39870' => 'ccan', 'Cc03_g06760' => 'ccan', 'Cc06_g02450' => 'ccan', 'Cc09_g09450' => 'ccan', 'CDE02G1959' => 'cde', 'CDE04G0600' => 'cde', 'CDE07G1996' => 'cde', 'CDE07G2078' => 'cde', 'CDE11G0611' => 'cde', 'Cfa001683' => 'cfa', 'Cfa001734' => 'cfa', 'Cfa001737' => 'cfa', 'Cfa003751' => 'cfa', 'Cfa012019' => 'cfa', 'Cfa017353' => 'cfa', 'Cfa017732' => 'cfa', 'Cfa022464' => 'cfa', 'Ciclev10012400m.g' => 'ccl', 'Ciclev10021242m.g' => 'ccl', 'Ciclev10021302m.g' => 'ccl', 'Ciclev10021463m.g' => 'ccl', 'Ciclev10032359m.g' => 'ccl', 'CiPaw.01G081000' => 'cil', 'CiPaw.01G262500' => 'cil', 'CiPaw.01G269800' => 'cil', 'CiPaw.02G168400' => 'cil', 'CiPaw.05G119500' => 'cil', 'CiPaw.11G147300' => 'cil', 'ClCG01G003630' => 'cla', 'ClCG05G000510' => 'cla', 'ClCG05G002300' => 'cla', 'ClCG08G007650' => 'cla', 'ClCG10G021250' => 'cla', 'COL.COLO4_06218' => 'col', 'COL.COLO4_12538' => 'col', 'COL.COLO4_14775' => 'col', 'COL.COLO4_23875' => 'col', 'Cpa.g.sc141.16' => 'cpa', 'Cpa.g.sc169.16' => 'cpa', 'Cpa.g.sc244.4' => 'cpa', 'Cpa.g.sc244.5' => 'cpa', 'Cpa.g.sc29.87' => 'cpa', 'Cpa.g.sc53.115' => 'cpa', 'Cre03.g207502' => 'cre', 'Cre06.g277000' => 'cre', 'Cre09.g394050' => 'cre', 'CsaV3_3G007680' => 'csa', 'CsaV3_3G009710' => 'csa', 'CsaV3_3G034790' => 'csa', 'CsaV3_5G003750' => 'csa', 'CsaV3_6G036620' => 'csa', 'CSS0002288' => 'camsi', 'CSS0011250' => 'camsi', 'CSS0021619' => 'camsi', 'CSS0046701' => 'camsi', 'DCAR_006420' => 'dca', 'DCAR_006865' => 'dca', 'DCAR_008558' => 'dca', 'DCAR_028754' => 'dca', 'DCAR_028755' => 'dca', 'Dinv31218' => 'din', 'Dinv32371' => 'din', 'Dinv34250' => 'din', 'Dinv37156' => 'din', 'Dinv43704' => 'din', 'Duzib093G1811' => 'dzi', 'Duzib106G1622' => 'dzi', 'Duzib114G0504' => 'dzi', 'Duzib128G0338' => 'dzi', 'Duzib128G1577' => 'dzi', 'Duzib133G0104' => 'dzi', 'Duzib133G1080' => 'dzi', 'Duzib138G0324' => 'dzi', 'Duzib138G0394' => 'dzi', 'Duzib205G0122' => 'dzi', 'Duzib268G1020' => 'dzi', 'Duzib268G1359' => 'dzi', 'ECA232G3929' => 'eca', 'ECA236G2210' => 'eca', 'ECA236G2287' => 'eca', 'ECA240G4568' => 'eca', 'ECA247G0894' => 'eca', 'EL10Ac1g00200' => 'bvu', 'EL10Ac1g00886' => 'bvu', 'EL10As1g23091' => 'bvu', 'EL10As1g23092' => 'bvu', 'Eucgr.A01284' => 'egr', 'Eucgr.A01285' => 'egr', 'Eucgr.D02456' => 'egr', 'Eucgr.E00018' => 'egr', 'Eucgr.E01439' => 'egr', 'Eucgr.G02859' => 'egr', 'FAN01G0168' => 'fan', 'FAN01G0453' => 'fan', 'FAN01G2761' => 'fan', 'FAN02G1239' => 'fan', 'FAN03G0645' => 'fan', 'FAN03G2707' => 'fan', 'FAN03G2978' => 'fan', 'FAN04G0227' => 'fan', 'FAN06G0091' => 'fan', 'FAN06G1418' => 'fan', 'FAN06G1512' => 'fan', 'FAN06G1986' => 'fan', 'FAN06G2905' => 'fan', 'FAN06G4325' => 'fan', 'FAN08G0033' => 'fan', 'FAN09G0642' => 'fan', 'FAN10G1763' => 'fan', 'FAN10G2026' => 'fan', 'FAN10G2513' => 'fan', 'FAN10G3402' => 'fan', 'FAN10G3564' => 'fan', 'FAN10G3987' => 'fan', 'FAN13G1490' => 'fan', 'FAN14G5857' => 'fan', 'FAN18G1188' => 'fan', 'FvH4_5g00750' => 'fve', 'FvH4_6g13410' => 'fve', 'FvH4_7g11740' => 'fve', 'FvH4_7g17410' => 'fve', 'FvH4_7g18860' => 'fve', 'Glyma.01G099100' => 'gma', 'Glyma.01G142300' => 'gma', 'Glyma.03G025500' => 'gma', 'Glyma.03G069700' => 'gma', 'Glyma.03G260000' => 'gma', 'Glyma.09G269800' => 'gma', 'Glyma.10G208700' => 'gma', 'Glyma.18G220400' => 'gma', 'Glyma.20G182000' => 'gma', 'Gohir.A01G221726' => 'ghi', 'Gohir.A07G134600' => 'ghi', 'Gohir.A07G146000' => 'ghi', 'Gohir.A08G173900' => 'ghi', 'Gohir.A09G194900' => 'ghi', 'Gohir.A10G204100' => 'ghi', 'Gohir.A11G080600' => 'ghi', 'Gohir.A11G327500' => 'ghi', 'Gohir.A12G101800' => 'ghi', 'Gohir.D01G211200' => 'ghi', 'Gohir.D07G139200' => 'ghi', 'Gohir.D07G152100' => 'ghi', 'Gohir.D08G192600' => 'ghi', 'Gohir.D09G189200' => 'ghi', 'Gohir.D10G212000' => 'ghi', 'Gohir.D11G085200' => 'ghi', 'Gohir.D11G346400' => 'ghi', 'Gohir.D12G104800' => 'ghi', 'Gorai.001G151300' => 'gra', 'Gorai.001G174100' => 'gra', 'Gorai.002G257000' => 'gra', 'Gorai.004G202600' => 'gra', 'Gorai.007G090900' => 'gra', 'Gorai.007G376700' => 'gra', 'Gorai.008G114100' => 'gra', 'Gorai.011G237900' => 'gra', 'GSVIVG01005450001' => 'vvi', 'GSVIVG01016232001' => 'vvi', 'GSVIVG01026157001' => 'vvi', 'GSVIVG01027419001' => 'vvi', 'GSVIVG01027631001' => 'vvi', 'GSVIVG01034143001' => 'vvi', 'HanXRQChr03g0093921' => 'han', 'HanXRQChr04g0120001' => 'han', 'HanXRQChr04g0122561' => 'han', 'HanXRQChr09g0246851' => 'han', 'HanXRQChr10g0293311' => 'han', 'HanXRQChr13g0425231' => 'han', 'HanXRQChr16g0532571' => 'han', 'Haze_09050' => 'cav', 'Haze_15715' => 'cav', 'Haze_15716' => 'cav', 'Haze_16803' => 'cav', 'Haze_16850' => 'cav', 'Hma1.2p1_0301F.1_g118655' => 'hma', 'Hma1.2p1_0309F.1_g120590' => 'hma', 'Hma1.2p1_0936F.1_g238900' => 'hma', 'Hma1.2p1_3552F.1_g336740' => 'hma', 'HPP92_003520' => 'vpl', 'HPP92_006628' => 'vpl', 'HPP92_006645' => 'vpl', 'HPP92_014669' => 'vpl', 'HPP92_015077' => 'vpl', 'Hund16742' => 'sun', 'Hund17022' => 'sun', 'Lalb_Chr02g0152131' => 'lal', 'Lalb_Chr05g0225371' => 'lal', 'Lalb_Chr07g0189841' => 'lal', 'Lalb_Chr07g0192961' => 'lal', 'Lalb_Chr12g0208221' => 'lal', 'Lalb_Chr13g0291211' => 'lal', 'Lalb_Chr13g0291781' => 'lal', 'Lalb_Chr18g0044651' => 'lal', 'Lalb_Chr21g0313731' => 'lal', 'Lj1g0022533' => 'lja', 'Lj2A18T50' => 'lonja', 'Lj2A92G93' => 'lonja', 'Lj3A965T73' => 'lonja', 'Lj3g0000673' => 'lja', 'Lj3g0002666' => 'lja', 'Lj4g0016985' => 'lja', 'Lj5g0003625' => 'lja', 'Lj7A529G36' => 'lonja', 'Lj9A569T49' => 'lonja', 'Lj9A604T63' => 'lonja', 'Lsat_1_v5_gn_3_132060' => 'lsa', 'Lsat_1_v5_gn_4_68941' => 'lsa', 'Lsat_1_v5_gn_5_95580' => 'lsa', 'Lsat_1_v5_gn_7_161' => 'lsa', 'Lsat_1_v5_gn_7_7041' => 'lsa', 'Lsat_1_v5_gn_9_33481' => 'lsa', 'Lsat_1_v5_gn_9_68260' => 'lsa', 'Manes.01G073100' => 'mes', 'Manes.01G266300' => 'mes', 'Manes.02G033300' => 'mes', 'Manes.05G017900' => 'mes', 'Manes.05G046100' => 'mes', 'Manes.08G080900' => 'mes', 'Manes.10G049400' => 'mes', 'Mapoly0009s0186' => 'mpo', 'Mapoly0036s0118' => 'mpo', 'Mapoly0101s0046' => 'mpo', 'MBI04_g30218_MAGBIO' => 'mbi', 'MBI04_g35564_MAGBIO' => 'mbi', 'MBI12_g34011_MAGBIO' => 'mbi', 'MBI14_g04655_MAGBIO' => 'mbi', 'MCO07G653' => 'mco', 'MCO10G173' => 'mco', 'MD01G1087100' => 'mdo', 'MD01G1104200' => 'mdo', 'MD02G1205100' => 'mdo', 'MD04G1079200' => 'mdo', 'MD04G1131400' => 'mdo', 'MD07G1121600' => 'mdo', 'MD07G1157300' => 'mdo', 'MD07G1171000' => 'mdo', 'MD12G1144500' => 'mdo', 'Medtr1g094610' => 'mtr', 'Medtr4g021795' => 'mtr', 'Medtr4g023760' => 'mtr', 'Medtr7g118050' => 'mtr', 'MELO3C005582.2' => 'cme', 'MELO3C005989.2' => 'cme', 'MELO3C006192.2' => 'cme', 'MELO3C009248.2' => 'cme', 'MELO3C019817.2' => 'cme', 'Migut.B01625' => 'egut', 'Migut.B01915' => 'egut', 'Migut.F01721' => 'egut', 'Migut.J00314' => 'egut', 'MSTRG.20742' => 'ama', 'MSTRG.8134' => 'ama', 'Nitab4.5_0000096g0010' => 'nta', 'Nitab4.5_0000202g0030' => 'nta', 'Nitab4.5_0000216g0370' => 'nta', 'Nitab4.5_0000457g0230' => 'nta', 'Nitab4.5_0001702g0170' => 'nta', 'Nitab4.5_0003607g0010' => 'nta', 'Nitab4.5_0004917g0020' => 'nta', 'Nitab4.5_0007059g0010' => 'nta', 'Nitab4.5_0007184g0010' => 'nta', 'Nitab4.5_0007346g0020' => 'nta', 'Nn1g00410' => 'nnu', 'Nn1g01252' => 'nnu', 'Nn2g11168' => 'nnu', 'Nn2g13403' => 'nnu', 'Nn2g13760' => 'nnu', 'Nn4g26380' => 'nnu', 'Oeu000806.2' => 'oeu', 'Oeu005788.1' => 'oeu', 'Oeu006900.3' => 'oeu', 'Oeu007797.1' => 'oeu', 'Oeu011932.1' => 'oeu', 'Oeu022739.1' => 'oeu', 'Oeu037918.1' => 'oeu', 'Oeu055490.2' => 'oeu', 'Os01g0844400' => 'osa', 'Os02g0819100' => 'osa', 'Os03g0804300' => 'osa', 'Os05g0458000' => 'osa', 'Os07g0467800' => 'osa', 'Os12g0602200' => 'osa', 'Peaxi162Scf00013g03444' => 'pax', 'Peaxi162Scf00094g01120' => 'pax', 'Peaxi162Scf00191g01211' => 'pax', 'Peaxi162Scf00238g01110' => 'pax', 'Peaxi162Scf00330g00719' => 'pax', 'Peaxi162Scf00627g00018' => 'pax', 'PGR031G2686' => 'pgr', 'PGR042G0809' => 'pgr', 'PGR142G0193' => 'pgr', 'PGSC0003DMG400011066' => 'stu', 'PGSC0003DMG400012041' => 'stu', 'PGSC0003DMG400013678' => 'stu', 'PGSC0003DMG400023477' => 'stu', 'PGSC0003DMG400025956' => 'stu', 'PGSC0003DMG401019151' => 'stu', 'Phvul.006G116400' => 'pvu', 'Phvul.007G097300' => 'pvu', 'Phvul.010G015000' => 'pvu', 'Phvul.010G083900' => 'pvu', 'Potri.001G117100' => 'ptr', 'Potri.002G147300' => 'ptr', 'Potri.003G115600' => 'ptr', 'Potri.006G087400' => 'ptr', 'Potri.010G226100' => 'ptr', 'Potri.014G069200' => 'ptr', 'Potri.014G104000' => 'ptr', 'Potri.016G100200' => 'ptr', 'Pp3c10_20450' => 'ppa', 'Pp3c1_42400' => 'ppa', 'Pp3c3_24390' => 'ppa', 'Pp3c3_2860' => 'ppa', 'PRCOL_00003193' => 'pco', 'Prupe.2G144500' => 'ppe', 'Prupe.2G195700' => 'ppe', 'Prupe.2G209800' => 'ppe', 'Prupe.5G080000' => 'ppe', 'Prupe.6G257900' => 'ppe', 'Psat3g001160' => 'psa', 'Psat6g181880' => 'psa', 'Psat7g233720' => 'psa', 'PSO063G7587' => 'pso', 'PSO339G2145' => 'pso', 'PSO339G3369' => 'pso', 'PSO478G2747' => 'pso', 'PSO513G0140' => 'pso', 'PSO782G1614' => 'pso', 'PSO782G4889' => 'pso', 'PSO782G5485' => 'pso', 'PSO801G0241' => 'pso', 'QL07p048854' => 'qlo', 'QL08p046745' => 'qlo', 'QL08p052606' => 'qlo', 'QL08p053414' => 'qlo', 'QL08p054868' => 'qlo', 'RcHm_v2.0_Chr1g0350251' => 'rch', 'RcHm_v2.0_Chr1g0360851' => 'rch', 'RcHm_v2.0_Chr1g0362791' => 'rch', 'RcHm_v2.0_Chr3g0466281' => 'rch', 'RcHm_v2.0_Chr7g0201481' => 'rch', 'Rhsim01G0148600' => 'rsi', 'Rhsim05G0194400' => 'rsi', 'Rhsim07G0000700' => 'rsi', 'Rhsim07G0000800' => 'rsi', 'Rhsim07G0027900' => 'rsi', 'Rhsim09G0149500' => 'rsi', 'RhsimUnG0186900' => 'rsi', 'Sabra01G0089900' => 'sbr', 'Sabra02G0114700' => 'sbr', 'Sabra02G0116300' => 'sbr', 'Sabra03G0080100' => 'sbr', 'Sabra08G0024300' => 'sbr', 'Sabra10G0174300' => 'sbr', 'Sabra14G0048900' => 'sbr', 'Sabra14G0076500' => 'sbr', 'SalBow5G2513' => 'sbo', 'Sc01g0002300' => 'sci', 'Sc01g0004450' => 'sci', 'Sc06g0001680' => 'sci', 'Sc23g0003580' => 'sci', 'Sed0000913' => 'sed', 'Sed0001655' => 'sed', 'Sed0007745' => 'sed', 'Sed0010951' => 'sed', 'Sed0017599' => 'sed', 'Sed0021405' => 'sed', 'Sed0022810' => 'sed', 'SEGI_07099' => 'sgi', 'SEGI_11931' => 'sgi', 'SEGI_13187' => 'sgi', 'SEGI_29958' => 'sgi', 'SEGI_36351' => 'sgi', 'SGA_v2.0_scaffold126G33770' => 'sas', 'SGA_v2.0_scaffold153G37003' => 'sas', 'SGA_v2.0_scaffold2G01359' => 'sas', 'SGA_v2.0_scaffold5G03064' => 'sas', 'SGA_v2.0_scaffold95G28903' => 'sas', 'SHI12701' => 'shi', 'SHI26410' => 'shi', 'SHI38997' => 'shi', 'SHI53759' => 'shi', 'SHI53886' => 'shi', 'SHI54714' => 'shi', 'SMO011G0041' => 'smo', 'SMO146G0251' => 'smo', 'SMO160G0004' => 'smo', 'SMO174G0057' => 'smo', 'SMO244G0089' => 'smo', 'SMO296G0011' => 'smo', 'Solyc01g091280.3' => 'sly', 'Solyc05g047610.3' => 'sly', 'Solyc05g047640.3' => 'sly', 'Solyc05g055630.3' => 'sly', 'Solyc10g018160.2' => 'sly', 'Solyc10g084820.2' => 'sly', 'Solyc10g086565.2' => 'sly', 'Sopen01g037030' => 'spe', 'Sopen05g027920' => 'spe', 'Sopen05g034070' => 'spe', 'Sopen10g007260' => 'spe', 'Sopen10g034260' => 'spe', 'Sopen10g035950' => 'spe', 'Sp3g07710' => 'spa', 'Sp4g27420' => 'spa', 'Sp5g02450' => 'spa', 'Sp6g01280' => 'spa', 'Sp6g38480' => 'spa', 'Sp7g20780' => 'spa', 'TAR374G1413' => 'tar', 'TAR623G1777' => 'tar', 'TAR629G2370' => 'tar', 'TAR633G1759' => 'tar', 'TAR636G3387' => 'tar', 'THA.LOC104802447' => 'tha', 'THA.LOC104813916' => 'tha', 'THA.LOC104816423' => 'tha', 'THA.LOC104817246' => 'tha', 'THA.LOC104825895' => 'tha', 'Thecc.01G335200' => 'tca', 'Thecc.01G377400' => 'tca', 'Thecc.03G262200' => 'tca', 'Thecc.05G036800' => 'tca', 'Thecc.10G080500' => 'tca', 'Thecc.10G080800' => 'tca', 'Thhalv10001560m.g' => 'esa', 'Thhalv10006120m.g' => 'esa', 'Thhalv10014375m.g' => 'esa', 'Thhalv10021264m.g' => 'esa', 'Thhalv10028856m.g' => 'esa', 'TPR.G1914' => 'tpr', 'TPR.G4757' => 'tpr', 'TPR.G5595' => 'tpr', 'TWI14G0952' => 'twi', 'TWI14G1307' => 'twi', 'TWI38G2143' => 'twi', 'TWI59G0826' => 'twi', 'TWI77G0527' => 'twi', 'TWI81G0150' => 'twi', 'unitig_21.g21018' => 'ugi', 'unitig_26.g9725' => 'ugi', 'unitig_744.g24653' => 'ugi', 'unitig_749.g13778' => 'ugi', 'unitig_899.g15035' => 'ugi', 'vmacro04296' => 'vma', 'vmacro04852' => 'vma', 'vmacro13404' => 'vma', 'vmacro20169' => 'vma', 'vmacro21014' => 'vma', 'VMungo0331G0237' => 'vmu', 'VMungo0331G0706' => 'vmu', 'VMungo0331G1361' => 'vmu', 'VMungo0331G1489' => 'vmu', 'VMungo0540G1037' => 'vmu', 'VMungo0720G2487' => 'vmu', 'VMungo0720G2721' => 'vmu', 'Zm00001eb086860' => 'zma', 'Zm00001eb104760' => 'zma', 'Zm00001eb148220' => 'zma', 'Zm00001eb259030' => 'zma', 'Zm00001eb289590' => 'zma', 'Zm00001eb420150' => 'zma' ), 'gf_id' => 'HOM05D000968', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000968' ), 'data_identifier' => 'HOM05D000968', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000968', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p31690' => 'bna', 'A03p36040' => 'bna', 'A03p53730' => 'bna', 'A04p01410' => 'bna', 'A05p05420' => 'bna', 'A05p39630' => 'bna', 'A05p39640' => 'bna', 'A09p00970' => 'bna', 'A09p53060' => 'bna', 'A10p31890' => 'bna', 'Aa31LG10G15040' => 'aar', 'Aa31LG1G21090' => 'aar', 'Aa31LG1G26900' => 'aar', 'Aa31LG3G1820' => 'aar', 'Aa31LG5G1100' => 'aar', 'Aa31LG6G4740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2265' => 'aag', 'Actinidia07998' => 'ach', 'Actinidia11266' => 'ach', 'Actinidia12682' => 'ach', 'Actinidia26479' => 'ach', 'Actinidia31406' => 'ach', 'Actinidia32437' => 'ach', 'Actinidia38862' => 'ach', 'Ah.05g174230' => 'amhyb', 'Ah.05g179070' => 'amhyb', 'Ah.05g179090' => 'amhyb', 'Ah.12g059950' => 'amhyb', 'AL3G20480' => 'aly', 'AL4G44520' => 'aly', 'AL5G43110' => 'aly', 'AL6G13890' => 'aly', 'AL6G52620' => 'aly', 'AL7G30830' => 'aly', 'Aqoxy1G00899' => 'aox', 'Aqoxy5G04333' => 'aox', 'Aqoxy7G00641' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3IZ0NN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4EF6AW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W9P8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79GA3M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C43NQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFCU6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G95YVJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCHK29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LU1UG8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX91RN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGB4B1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8DA0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9H7JI' => 'arhy', 'AT3G09320' => 'ath', 'AT3G60800' => 'ath', 'AT4G00840' => 'ath', 'AT4G22750' => 'ath', 'AT5G04270' => 'ath', 'ATR0090G003' => 'atr', 'ATR0559G349' => 'atr', 'ATR0680G261' => 'atr', 'ATR0810G048' => 'atr', 'Atru.chr12.831' => 'acertr', 'Atru.chr5.303' => 'acertr', 'Atru.chr5.748' => 'acertr', 'Atru.chr8.1999' => 'acertr', 'Atru.chr9.1436' => 'acertr', 'AUR62004211' => 'cqu', 'AUR62004548' => 'cqu', 'AUR62013637' => 'cqu', 'AUR62022662' => 'cqu', 'AUR62025777' => 'cqu', 'AUR62042386' => 'cqu', 'BcaB01g02310' => 'bca', 'BcaB01g06062' => 'bca', 'BcaB02g08975' => 'bca', 'BcaB02g08980' => 'bca', 'BcaC01g04228' => 'bca', 'BcaC01g06830' => 'bca', 'BcaC02g10186' => 'bca', 'BcaC02g12214' => 'bca', 'BcaC04g24101' => 'bca', 'BcaC05g29520' => 'bca', 'BcaC05g29661' => 'bca', 'BcaC06g32130' => 'bca', 'BcaC06g32131' => 'bca', 'BcaC07g40601' => 'bca', 'BcaC07g42641' => 'bca', 'BcaNung01038' => 'bca', 'BcaNung01676' => 'bca', 'BcaNung02480' => 'bca', 'BcaNung07376' => 'bca', 'BolC3t16146H' => 'bol', 'BolC3t16637H' => 'bol', 'BolC4t22257H' => 'bol', 'BolC4t24728H' => 'bol', 'BolC5t34517H' => 'bol', 'BolC7t45703H' => 'bol', 'BolC8t51166H' => 'bol', 'BolC9t53038H' => 'bol', 'BolC9t60000H' => 'bol', 'BraA01t01345Z' => 'bra', 'BraA01t01346Z' => 'bra', 'BraA01t01348Z' => 'bra', 'BraA03t12347Z' => 'bra', 'BraA03t12775Z' => 'bra', 'BraA03t14439Z' => 'bra', 'BraA04t15860Z' => 'bra', 'BraA05t19511Z' => 'bra', 'BraA05t22746Z' => 'bra', 'BraA09t35767Z' => 'bra', 'BraA09t40732Z' => 'bra', 'BraA10t45233Z' => 'bra', 'C03p38720' => 'bna', 'C03p43680' => 'bna', 'C04p06350' => 'bna', 'C04p31800' => 'bna', 'C05p58680' => 'bna', 'C07p52110' => 'bna', 'C08p35760' => 'bna', 'C09p01050' => 'bna', 'C09p72600' => 'bna', 'CAN.G106.2' => 'can', 'CAN.G1482.1' => 'can', 'CAN.G324.12' => 'can', 'CAN.G388.20' => 'can', 'CAN.G412.7' => 'can', 'CAN.G694.32' => 'can', 'CAN.G92.12' => 'can', 'CANSAT11G2353' => 'cansat', 'CANSAT21G1398' => 'cansat', 'CANSAT56G2456' => 'cansat', 'CANSAT56G3031' => 'cansat', 'CANSAT56G4539' => 'cansat', 'CARHR083680' => 'chi', 'CARHR171190' => 'chi', 'CARHR209010' => 'chi', 'CARHR229680' => 'chi', 'CARHR249490' => 'chi', 'Carub.0003s0844' => 'cru', 'Carub.0005s2755' => 'cru', 'Carub.0006s0322' => 'cru', 'Carub.0006s3586' => 'cru', 'Carub.0007s1855' => 'cru', 'Ca_07808_v3' => 'car', 'Ca_09535_v3' => 'car', 'Ca_10548_v3' => 'car', 'Ca_19913_v3' => 'car', 'Ca_19916_v3' => 'car', 'Ca_19975_v3' => 'car', 'CBR_g22876' => 'cbr', 'CBR_g22879' => 'cbr', 'CBR_g38491' => 'cbr', 'CBR_g54185' => 'cbr', 'CBR_g54190' => 'cbr', 'Cc02_g11020' => 'ccan', 'Cc02_g23920' => 'ccan', 'Cc02_g39860' => 'ccan', 'Cc02_g39870' => 'ccan', 'Cc03_g06760' => 'ccan', 'Cc06_g02450' => 'ccan', 'Cc09_g09450' => 'ccan', 'CDE02G1959' => 'cde', 'CDE04G0600' => 'cde', 'CDE07G1996' => 'cde', 'CDE07G2078' => 'cde', 'CDE11G0611' => 'cde', 'Cfa001683' => 'cfa', 'Cfa001734' => 'cfa', 'Cfa001737' => 'cfa', 'Cfa003751' => 'cfa', 'Cfa012019' => 'cfa', 'Cfa017353' => 'cfa', 'Cfa017732' => 'cfa', 'Cfa022464' => 'cfa', 'Ciclev10012400m.g' => 'ccl', 'Ciclev10021242m.g' => 'ccl', 'Ciclev10021302m.g' => 'ccl', 'Ciclev10021463m.g' => 'ccl', 'Ciclev10032359m.g' => 'ccl', 'CiPaw.01G081000' => 'cil', 'CiPaw.01G262500' => 'cil', 'CiPaw.01G269800' => 'cil', 'CiPaw.02G168400' => 'cil', 'CiPaw.05G119500' => 'cil', 'CiPaw.11G147300' => 'cil', 'ClCG01G003630' => 'cla', 'ClCG05G000510' => 'cla', 'ClCG05G002300' => 'cla', 'ClCG08G007650' => 'cla', 'ClCG10G021250' => 'cla', 'COL.COLO4_06218' => 'col', 'COL.COLO4_12538' => 'col', 'COL.COLO4_14775' => 'col', 'COL.COLO4_23875' => 'col', 'Cpa.g.sc141.16' => 'cpa', 'Cpa.g.sc169.16' => 'cpa', 'Cpa.g.sc244.4' => 'cpa', 'Cpa.g.sc244.5' => 'cpa', 'Cpa.g.sc29.87' => 'cpa', 'Cpa.g.sc53.115' => 'cpa', 'Cre03.g207502' => 'cre', 'Cre06.g277000' => 'cre', 'Cre09.g394050' => 'cre', 'CsaV3_3G007680' => 'csa', 'CsaV3_3G009710' => 'csa', 'CsaV3_3G034790' => 'csa', 'CsaV3_5G003750' => 'csa', 'CsaV3_6G036620' => 'csa', 'CSS0002288' => 'camsi', 'CSS0011250' => 'camsi', 'CSS0021619' => 'camsi', 'CSS0046701' => 'camsi', 'DCAR_006420' => 'dca', 'DCAR_006865' => 'dca', 'DCAR_008558' => 'dca', 'DCAR_028754' => 'dca', 'DCAR_028755' => 'dca', 'Dinv31218' => 'din', 'Dinv32371' => 'din', 'Dinv34250' => 'din', 'Dinv37156' => 'din', 'Dinv43704' => 'din', 'Duzib093G1811' => 'dzi', 'Duzib106G1622' => 'dzi', 'Duzib114G0504' => 'dzi', 'Duzib128G0338' => 'dzi', 'Duzib128G1577' => 'dzi', 'Duzib133G0104' => 'dzi', 'Duzib133G1080' => 'dzi', 'Duzib138G0324' => 'dzi', 'Duzib138G0394' => 'dzi', 'Duzib205G0122' => 'dzi', 'Duzib268G1020' => 'dzi', 'Duzib268G1359' => 'dzi', 'ECA232G3929' => 'eca', 'ECA236G2210' => 'eca', 'ECA236G2287' => 'eca', 'ECA240G4568' => 'eca', 'ECA247G0894' => 'eca', 'EL10Ac1g00200' => 'bvu', 'EL10Ac1g00886' => 'bvu', 'EL10As1g23091' => 'bvu', 'EL10As1g23092' => 'bvu', 'Eucgr.A01284' => 'egr', 'Eucgr.A01285' => 'egr', 'Eucgr.D02456' => 'egr', 'Eucgr.E00018' => 'egr', 'Eucgr.E01439' => 'egr', 'Eucgr.G02859' => 'egr', 'FAN01G0168' => 'fan', 'FAN01G0453' => 'fan', 'FAN01G2761' => 'fan', 'FAN02G1239' => 'fan', 'FAN03G0645' => 'fan', 'FAN03G2707' => 'fan', 'FAN03G2978' => 'fan', 'FAN04G0227' => 'fan', 'FAN06G0091' => 'fan', 'FAN06G1418' => 'fan', 'FAN06G1512' => 'fan', 'FAN06G1986' => 'fan', 'FAN06G2905' => 'fan', 'FAN06G4325' => 'fan', 'FAN08G0033' => 'fan', 'FAN09G0642' => 'fan', 'FAN10G1763' => 'fan', 'FAN10G2026' => 'fan', 'FAN10G2513' => 'fan', 'FAN10G3402' => 'fan', 'FAN10G3564' => 'fan', 'FAN10G3987' => 'fan', 'FAN13G1490' => 'fan', 'FAN14G5857' => 'fan', 'FAN18G1188' => 'fan', 'FvH4_5g00750' => 'fve', 'FvH4_6g13410' => 'fve', 'FvH4_7g11740' => 'fve', 'FvH4_7g17410' => 'fve', 'FvH4_7g18860' => 'fve', 'Glyma.01G099100' => 'gma', 'Glyma.01G142300' => 'gma', 'Glyma.03G025500' => 'gma', 'Glyma.03G069700' => 'gma', 'Glyma.03G260000' => 'gma', 'Glyma.09G269800' => 'gma', 'Glyma.10G208700' => 'gma', 'Glyma.18G220400' => 'gma', 'Glyma.20G182000' => 'gma', 'Gohir.A01G221726' => 'ghi', 'Gohir.A07G134600' => 'ghi', 'Gohir.A07G146000' => 'ghi', 'Gohir.A08G173900' => 'ghi', 'Gohir.A09G194900' => 'ghi', 'Gohir.A10G204100' => 'ghi', 'Gohir.A11G080600' => 'ghi', 'Gohir.A11G327500' => 'ghi', 'Gohir.A12G101800' => 'ghi', 'Gohir.D01G211200' => 'ghi', 'Gohir.D07G139200' => 'ghi', 'Gohir.D07G152100' => 'ghi', 'Gohir.D08G192600' => 'ghi', 'Gohir.D09G189200' => 'ghi', 'Gohir.D10G212000' => 'ghi', 'Gohir.D11G085200' => 'ghi', 'Gohir.D11G346400' => 'ghi', 'Gohir.D12G104800' => 'ghi', 'Gorai.001G151300' => 'gra', 'Gorai.001G174100' => 'gra', 'Gorai.002G257000' => 'gra', 'Gorai.004G202600' => 'gra', 'Gorai.007G090900' => 'gra', 'Gorai.007G376700' => 'gra', 'Gorai.008G114100' => 'gra', 'Gorai.011G237900' => 'gra', 'GSVIVG01005450001' => 'vvi', 'GSVIVG01016232001' => 'vvi', 'GSVIVG01026157001' => 'vvi', 'GSVIVG01027419001' => 'vvi', 'GSVIVG01027631001' => 'vvi', 'GSVIVG01034143001' => 'vvi', 'HanXRQChr03g0093921' => 'han', 'HanXRQChr04g0120001' => 'han', 'HanXRQChr04g0122561' => 'han', 'HanXRQChr09g0246851' => 'han', 'HanXRQChr10g0293311' => 'han', 'HanXRQChr13g0425231' => 'han', 'HanXRQChr16g0532571' => 'han', 'Haze_09050' => 'cav', 'Haze_15715' => 'cav', 'Haze_15716' => 'cav', 'Haze_16803' => 'cav', 'Haze_16850' => 'cav', 'Hma1.2p1_0301F.1_g118655' => 'hma', 'Hma1.2p1_0309F.1_g120590' => 'hma', 'Hma1.2p1_0936F.1_g238900' => 'hma', 'Hma1.2p1_3552F.1_g336740' => 'hma', 'HPP92_003520' => 'vpl', 'HPP92_006628' => 'vpl', 'HPP92_006645' => 'vpl', 'HPP92_014669' => 'vpl', 'HPP92_015077' => 'vpl', 'Hund16742' => 'sun', 'Hund17022' => 'sun', 'Lalb_Chr02g0152131' => 'lal', 'Lalb_Chr05g0225371' => 'lal', 'Lalb_Chr07g0189841' => 'lal', 'Lalb_Chr07g0192961' => 'lal', 'Lalb_Chr12g0208221' => 'lal', 'Lalb_Chr13g0291211' => 'lal', 'Lalb_Chr13g0291781' => 'lal', 'Lalb_Chr18g0044651' => 'lal', 'Lalb_Chr21g0313731' => 'lal', 'Lj1g0022533' => 'lja', 'Lj2A18T50' => 'lonja', 'Lj2A92G93' => 'lonja', 'Lj3A965T73' => 'lonja', 'Lj3g0000673' => 'lja', 'Lj3g0002666' => 'lja', 'Lj4g0016985' => 'lja', 'Lj5g0003625' => 'lja', 'Lj7A529G36' => 'lonja', 'Lj9A569T49' => 'lonja', 'Lj9A604T63' => 'lonja', 'Lsat_1_v5_gn_3_132060' => 'lsa', 'Lsat_1_v5_gn_4_68941' => 'lsa', 'Lsat_1_v5_gn_5_95580' => 'lsa', 'Lsat_1_v5_gn_7_161' => 'lsa', 'Lsat_1_v5_gn_7_7041' => 'lsa', 'Lsat_1_v5_gn_9_33481' => 'lsa', 'Lsat_1_v5_gn_9_68260' => 'lsa', 'Manes.01G073100' => 'mes', 'Manes.01G266300' => 'mes', 'Manes.02G033300' => 'mes', 'Manes.05G017900' => 'mes', 'Manes.05G046100' => 'mes', 'Manes.08G080900' => 'mes', 'Manes.10G049400' => 'mes', 'Mapoly0009s0186' => 'mpo', 'Mapoly0036s0118' => 'mpo', 'Mapoly0101s0046' => 'mpo', 'MBI04_g30218_MAGBIO' => 'mbi', 'MBI04_g35564_MAGBIO' => 'mbi', 'MBI12_g34011_MAGBIO' => 'mbi', 'MBI14_g04655_MAGBIO' => 'mbi', 'MCO07G653' => 'mco', 'MCO10G173' => 'mco', 'MD01G1087100' => 'mdo', 'MD01G1104200' => 'mdo', 'MD02G1205100' => 'mdo', 'MD04G1079200' => 'mdo', 'MD04G1131400' => 'mdo', 'MD07G1121600' => 'mdo', 'MD07G1157300' => 'mdo', 'MD07G1171000' => 'mdo', 'MD12G1144500' => 'mdo', 'Medtr1g094610' => 'mtr', 'Medtr4g021795' => 'mtr', 'Medtr4g023760' => 'mtr', 'Medtr7g118050' => 'mtr', 'MELO3C005582.2' => 'cme', 'MELO3C005989.2' => 'cme', 'MELO3C006192.2' => 'cme', 'MELO3C009248.2' => 'cme', 'MELO3C019817.2' => 'cme', 'Migut.B01625' => 'egut', 'Migut.B01915' => 'egut', 'Migut.F01721' => 'egut', 'Migut.J00314' => 'egut', 'MSTRG.20742' => 'ama', 'MSTRG.8134' => 'ama', 'Nitab4.5_0000096g0010' => 'nta', 'Nitab4.5_0000202g0030' => 'nta', 'Nitab4.5_0000216g0370' => 'nta', 'Nitab4.5_0000457g0230' => 'nta', 'Nitab4.5_0001702g0170' => 'nta', 'Nitab4.5_0003607g0010' => 'nta', 'Nitab4.5_0004917g0020' => 'nta', 'Nitab4.5_0007059g0010' => 'nta', 'Nitab4.5_0007184g0010' => 'nta', 'Nitab4.5_0007346g0020' => 'nta', 'Nn1g00410' => 'nnu', 'Nn1g01252' => 'nnu', 'Nn2g11168' => 'nnu', 'Nn2g13403' => 'nnu', 'Nn2g13760' => 'nnu', 'Nn4g26380' => 'nnu', 'Oeu000806.2' => 'oeu', 'Oeu005788.1' => 'oeu', 'Oeu006900.3' => 'oeu', 'Oeu007797.1' => 'oeu', 'Oeu011932.1' => 'oeu', 'Oeu022739.1' => 'oeu', 'Oeu037918.1' => 'oeu', 'Oeu055490.2' => 'oeu', 'Os01g0844400' => 'osa', 'Os02g0819100' => 'osa', 'Os03g0804300' => 'osa', 'Os05g0458000' => 'osa', 'Os07g0467800' => 'osa', 'Os12g0602200' => 'osa', 'Peaxi162Scf00013g03444' => 'pax', 'Peaxi162Scf00094g01120' => 'pax', 'Peaxi162Scf00191g01211' => 'pax', 'Peaxi162Scf00238g01110' => 'pax', 'Peaxi162Scf00330g00719' => 'pax', 'Peaxi162Scf00627g00018' => 'pax', 'PGR031G2686' => 'pgr', 'PGR042G0809' => 'pgr', 'PGR142G0193' => 'pgr', 'PGSC0003DMG400011066' => 'stu', 'PGSC0003DMG400012041' => 'stu', 'PGSC0003DMG400013678' => 'stu', 'PGSC0003DMG400023477' => 'stu', 'PGSC0003DMG400025956' => 'stu', 'PGSC0003DMG401019151' => 'stu', 'Phvul.006G116400' => 'pvu', 'Phvul.007G097300' => 'pvu', 'Phvul.010G015000' => 'pvu', 'Phvul.010G083900' => 'pvu', 'Potri.001G117100' => 'ptr', 'Potri.002G147300' => 'ptr', 'Potri.003G115600' => 'ptr', 'Potri.006G087400' => 'ptr', 'Potri.010G226100' => 'ptr', 'Potri.014G069200' => 'ptr', 'Potri.014G104000' => 'ptr', 'Potri.016G100200' => 'ptr', 'Pp3c10_20450' => 'ppa', 'Pp3c1_42400' => 'ppa', 'Pp3c3_24390' => 'ppa', 'Pp3c3_2860' => 'ppa', 'PRCOL_00003193' => 'pco', 'Prupe.2G144500' => 'ppe', 'Prupe.2G195700' => 'ppe', 'Prupe.2G209800' => 'ppe', 'Prupe.5G080000' => 'ppe', 'Prupe.6G257900' => 'ppe', 'Psat3g001160' => 'psa', 'Psat6g181880' => 'psa', 'Psat7g233720' => 'psa', 'PSO063G7587' => 'pso', 'PSO339G2145' => 'pso', 'PSO339G3369' => 'pso', 'PSO478G2747' => 'pso', 'PSO513G0140' => 'pso', 'PSO782G1614' => 'pso', 'PSO782G4889' => 'pso', 'PSO782G5485' => 'pso', 'PSO801G0241' => 'pso', 'QL07p048854' => 'qlo', 'QL08p046745' => 'qlo', 'QL08p052606' => 'qlo', 'QL08p053414' => 'qlo', 'QL08p054868' => 'qlo', 'RcHm_v2.0_Chr1g0350251' => 'rch', 'RcHm_v2.0_Chr1g0360851' => 'rch', 'RcHm_v2.0_Chr1g0362791' => 'rch', 'RcHm_v2.0_Chr3g0466281' => 'rch', 'RcHm_v2.0_Chr7g0201481' => 'rch', 'Rhsim01G0148600' => 'rsi', 'Rhsim05G0194400' => 'rsi', 'Rhsim07G0000700' => 'rsi', 'Rhsim07G0000800' => 'rsi', 'Rhsim07G0027900' => 'rsi', 'Rhsim09G0149500' => 'rsi', 'RhsimUnG0186900' => 'rsi', 'Sabra01G0089900' => 'sbr', 'Sabra02G0114700' => 'sbr', 'Sabra02G0116300' => 'sbr', 'Sabra03G0080100' => 'sbr', 'Sabra08G0024300' => 'sbr', 'Sabra10G0174300' => 'sbr', 'Sabra14G0048900' => 'sbr', 'Sabra14G0076500' => 'sbr', 'SalBow5G2513' => 'sbo', 'Sc01g0002300' => 'sci', 'Sc01g0004450' => 'sci', 'Sc06g0001680' => 'sci', 'Sc23g0003580' => 'sci', 'Sed0000913' => 'sed', 'Sed0001655' => 'sed', 'Sed0007745' => 'sed', 'Sed0010951' => 'sed', 'Sed0017599' => 'sed', 'Sed0021405' => 'sed', 'Sed0022810' => 'sed', 'SEGI_07099' => 'sgi', 'SEGI_11931' => 'sgi', 'SEGI_13187' => 'sgi', 'SEGI_29958' => 'sgi', 'SEGI_36351' => 'sgi', 'SGA_v2.0_scaffold126G33770' => 'sas', 'SGA_v2.0_scaffold153G37003' => 'sas', 'SGA_v2.0_scaffold2G01359' => 'sas', 'SGA_v2.0_scaffold5G03064' => 'sas', 'SGA_v2.0_scaffold95G28903' => 'sas', 'SHI12701' => 'shi', 'SHI26410' => 'shi', 'SHI38997' => 'shi', 'SHI53759' => 'shi', 'SHI53886' => 'shi', 'SHI54714' => 'shi', 'SMO011G0041' => 'smo', 'SMO146G0251' => 'smo', 'SMO160G0004' => 'smo', 'SMO174G0057' => 'smo', 'SMO244G0089' => 'smo', 'SMO296G0011' => 'smo', 'Solyc01g091280.3' => 'sly', 'Solyc05g047610.3' => 'sly', 'Solyc05g047640.3' => 'sly', 'Solyc05g055630.3' => 'sly', 'Solyc10g018160.2' => 'sly', 'Solyc10g084820.2' => 'sly', 'Solyc10g086565.2' => 'sly', 'Sopen01g037030' => 'spe', 'Sopen05g027920' => 'spe', 'Sopen05g034070' => 'spe', 'Sopen10g007260' => 'spe', 'Sopen10g034260' => 'spe', 'Sopen10g035950' => 'spe', 'Sp3g07710' => 'spa', 'Sp4g27420' => 'spa', 'Sp5g02450' => 'spa', 'Sp6g01280' => 'spa', 'Sp6g38480' => 'spa', 'Sp7g20780' => 'spa', 'TAR374G1413' => 'tar', 'TAR623G1777' => 'tar', 'TAR629G2370' => 'tar', 'TAR633G1759' => 'tar', 'TAR636G3387' => 'tar', 'THA.LOC104802447' => 'tha', 'THA.LOC104813916' => 'tha', 'THA.LOC104816423' => 'tha', 'THA.LOC104817246' => 'tha', 'THA.LOC104825895' => 'tha', 'Thecc.01G335200' => 'tca', 'Thecc.01G377400' => 'tca', 'Thecc.03G262200' => 'tca', 'Thecc.05G036800' => 'tca', 'Thecc.10G080500' => 'tca', 'Thecc.10G080800' => 'tca', 'Thhalv10001560m.g' => 'esa', 'Thhalv10006120m.g' => 'esa', 'Thhalv10014375m.g' => 'esa', 'Thhalv10021264m.g' => 'esa', 'Thhalv10028856m.g' => 'esa', 'TPR.G1914' => 'tpr', 'TPR.G4757' => 'tpr', 'TPR.G5595' => 'tpr', 'TWI14G0952' => 'twi', 'TWI14G1307' => 'twi', 'TWI38G2143' => 'twi', 'TWI59G0826' => 'twi', 'TWI77G0527' => 'twi', 'TWI81G0150' => 'twi', 'unitig_21.g21018' => 'ugi', 'unitig_26.g9725' => 'ugi', 'unitig_744.g24653' => 'ugi', 'unitig_749.g13778' => 'ugi', 'unitig_899.g15035' => 'ugi', 'vmacro04296' => 'vma', 'vmacro04852' => 'vma', 'vmacro13404' => 'vma', 'vmacro20169' => 'vma', 'vmacro21014' => 'vma', 'VMungo0331G0237' => 'vmu', 'VMungo0331G0706' => 'vmu', 'VMungo0331G1361' => 'vmu', 'VMungo0331G1489' => 'vmu', 'VMungo0540G1037' => 'vmu', 'VMungo0720G2487' => 'vmu', 'VMungo0720G2721' => 'vmu', 'Zm00001eb086860' => 'zma', 'Zm00001eb104760' => 'zma', 'Zm00001eb148220' => 'zma', 'Zm00001eb259030' => 'zma', 'Zm00001eb289590' => 'zma', 'Zm00001eb420150' => 'zma' ) $gf_id = 'HOM05D000968' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000968' ) $data_identifier = 'HOM05D000968' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 19, 'bol' => (int) 9, 'bra' => (int) 12, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 5, 'ccan' => (int) 7, 'cde' => (int) 5, 'cfa' => (int) 8, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 4, 'dca' => (int) 5, 'din' => (int) 5, 'dzi' => (int) 12, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 25, 'fve' => (int) 5, 'gma' => (int) 9, 'ghi' => (int) 18, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 7, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 5, 'sun' => (int) 2, 'lal' => (int) 9, 'lja' => (int) 5, 'lonja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 9, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 2, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 3, 'stu' => (int) 6, 'pvu' => (int) 4, 'ptr' => (int) 8, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 3, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 1, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 5, 'sas' => (int) 5, 'shi' => (int) 6, 'smo' => (int) 6, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 3, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420150' $species_info = array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ) $local_species = 'csa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000968', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p31690' => 'bna', 'A03p36040' => 'bna', 'A03p53730' => 'bna', 'A04p01410' => 'bna', 'A05p05420' => 'bna', 'A05p39630' => 'bna', 'A05p39640' => 'bna', 'A09p00970' => 'bna', 'A09p53060' => 'bna', 'A10p31890' => 'bna', 'Aa31LG10G15040' => 'aar', 'Aa31LG1G21090' => 'aar', 'Aa31LG1G26900' => 'aar', 'Aa31LG3G1820' => 'aar', 'Aa31LG5G1100' => 'aar', 'Aa31LG6G4740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2265' => 'aag', 'Actinidia07998' => 'ach', 'Actinidia11266' => 'ach', 'Actinidia12682' => 'ach', 'Actinidia26479' => 'ach', 'Actinidia31406' => 'ach', 'Actinidia32437' => 'ach', 'Actinidia38862' => 'ach', 'Ah.05g174230' => 'amhyb', 'Ah.05g179070' => 'amhyb', 'Ah.05g179090' => 'amhyb', 'Ah.12g059950' => 'amhyb', 'AL3G20480' => 'aly', 'AL4G44520' => 'aly', 'AL5G43110' => 'aly', 'AL6G13890' => 'aly', 'AL6G52620' => 'aly', 'AL7G30830' => 'aly', 'Aqoxy1G00899' => 'aox', 'Aqoxy5G04333' => 'aox', 'Aqoxy7G00641' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3IZ0NN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4EF6AW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W9P8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79GA3M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C43NQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFCU6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G95YVJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCHK29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LU1UG8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX91RN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGB4B1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8DA0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9H7JI' => 'arhy', 'AT3G09320' => 'ath', 'AT3G60800' => 'ath', 'AT4G00840' => 'ath', 'AT4G22750' => 'ath', 'AT5G04270' => 'ath', 'ATR0090G003' => 'atr', 'ATR0559G349' => 'atr', 'ATR0680G261' => 'atr', 'ATR0810G048' => 'atr', 'Atru.chr12.831' => 'acertr', 'Atru.chr5.303' => 'acertr', 'Atru.chr5.748' => 'acertr', 'Atru.chr8.1999' => 'acertr', 'Atru.chr9.1436' => 'acertr', 'AUR62004211' => 'cqu', 'AUR62004548' => 'cqu', 'AUR62013637' => 'cqu', 'AUR62022662' => 'cqu', 'AUR62025777' => 'cqu', 'AUR62042386' => 'cqu', 'BcaB01g02310' => 'bca', 'BcaB01g06062' => 'bca', 'BcaB02g08975' => 'bca', 'BcaB02g08980' => 'bca', 'BcaC01g04228' => 'bca', 'BcaC01g06830' => 'bca', 'BcaC02g10186' => 'bca', 'BcaC02g12214' => 'bca', 'BcaC04g24101' => 'bca', 'BcaC05g29520' => 'bca', 'BcaC05g29661' => 'bca', 'BcaC06g32130' => 'bca', 'BcaC06g32131' => 'bca', 'BcaC07g40601' => 'bca', 'BcaC07g42641' => 'bca', 'BcaNung01038' => 'bca', 'BcaNung01676' => 'bca', 'BcaNung02480' => 'bca', 'BcaNung07376' => 'bca', 'BolC3t16146H' => 'bol', 'BolC3t16637H' => 'bol', 'BolC4t22257H' => 'bol', 'BolC4t24728H' => 'bol', 'BolC5t34517H' => 'bol', 'BolC7t45703H' => 'bol', 'BolC8t51166H' => 'bol', 'BolC9t53038H' => 'bol', 'BolC9t60000H' => 'bol', 'BraA01t01345Z' => 'bra', 'BraA01t01346Z' => 'bra', 'BraA01t01348Z' => 'bra', 'BraA03t12347Z' => 'bra', 'BraA03t12775Z' => 'bra', 'BraA03t14439Z' => 'bra', 'BraA04t15860Z' => 'bra', 'BraA05t19511Z' => 'bra', 'BraA05t22746Z' => 'bra', 'BraA09t35767Z' => 'bra', 'BraA09t40732Z' => 'bra', 'BraA10t45233Z' => 'bra', 'C03p38720' => 'bna', 'C03p43680' => 'bna', 'C04p06350' => 'bna', 'C04p31800' => 'bna', 'C05p58680' => 'bna', 'C07p52110' => 'bna', 'C08p35760' => 'bna', 'C09p01050' => 'bna', 'C09p72600' => 'bna', 'CAN.G106.2' => 'can', 'CAN.G1482.1' => 'can', 'CAN.G324.12' => 'can', 'CAN.G388.20' => 'can', 'CAN.G412.7' => 'can', 'CAN.G694.32' => 'can', 'CAN.G92.12' => 'can', 'CANSAT11G2353' => 'cansat', 'CANSAT21G1398' => 'cansat', 'CANSAT56G2456' => 'cansat', 'CANSAT56G3031' => 'cansat', 'CANSAT56G4539' => 'cansat', 'CARHR083680' => 'chi', 'CARHR171190' => 'chi', 'CARHR209010' => 'chi', 'CARHR229680' => 'chi', 'CARHR249490' => 'chi', 'Carub.0003s0844' => 'cru', 'Carub.0005s2755' => 'cru', 'Carub.0006s0322' => 'cru', 'Carub.0006s3586' => 'cru', 'Carub.0007s1855' => 'cru', 'Ca_07808_v3' => 'car', 'Ca_09535_v3' => 'car', 'Ca_10548_v3' => 'car', 'Ca_19913_v3' => 'car', 'Ca_19916_v3' => 'car', 'Ca_19975_v3' => 'car', 'CBR_g22876' => 'cbr', 'CBR_g22879' => 'cbr', 'CBR_g38491' => 'cbr', 'CBR_g54185' => 'cbr', 'CBR_g54190' => 'cbr', 'Cc02_g11020' => 'ccan', 'Cc02_g23920' => 'ccan', 'Cc02_g39860' => 'ccan', 'Cc02_g39870' => 'ccan', 'Cc03_g06760' => 'ccan', 'Cc06_g02450' => 'ccan', 'Cc09_g09450' => 'ccan', 'CDE02G1959' => 'cde', 'CDE04G0600' => 'cde', 'CDE07G1996' => 'cde', 'CDE07G2078' => 'cde', 'CDE11G0611' => 'cde', 'Cfa001683' => 'cfa', 'Cfa001734' => 'cfa', 'Cfa001737' => 'cfa', 'Cfa003751' => 'cfa', 'Cfa012019' => 'cfa', 'Cfa017353' => 'cfa', 'Cfa017732' => 'cfa', 'Cfa022464' => 'cfa', 'Ciclev10012400m.g' => 'ccl', 'Ciclev10021242m.g' => 'ccl', 'Ciclev10021302m.g' => 'ccl', 'Ciclev10021463m.g' => 'ccl', 'Ciclev10032359m.g' => 'ccl', 'CiPaw.01G081000' => 'cil', 'CiPaw.01G262500' => 'cil', 'CiPaw.01G269800' => 'cil', 'CiPaw.02G168400' => 'cil', 'CiPaw.05G119500' => 'cil', 'CiPaw.11G147300' => 'cil', 'ClCG01G003630' => 'cla', 'ClCG05G000510' => 'cla', 'ClCG05G002300' => 'cla', 'ClCG08G007650' => 'cla', 'ClCG10G021250' => 'cla', 'COL.COLO4_06218' => 'col', 'COL.COLO4_12538' => 'col', 'COL.COLO4_14775' => 'col', 'COL.COLO4_23875' => 'col', 'Cpa.g.sc141.16' => 'cpa', 'Cpa.g.sc169.16' => 'cpa', 'Cpa.g.sc244.4' => 'cpa', 'Cpa.g.sc244.5' => 'cpa', 'Cpa.g.sc29.87' => 'cpa', 'Cpa.g.sc53.115' => 'cpa', 'Cre03.g207502' => 'cre', 'Cre06.g277000' => 'cre', 'Cre09.g394050' => 'cre', 'CsaV3_3G007680' => 'csa', 'CsaV3_3G009710' => 'csa', 'CsaV3_3G034790' => 'csa', 'CsaV3_5G003750' => 'csa', 'CsaV3_6G036620' => 'csa', 'CSS0002288' => 'camsi', 'CSS0011250' => 'camsi', 'CSS0021619' => 'camsi', 'CSS0046701' => 'camsi', 'DCAR_006420' => 'dca', 'DCAR_006865' => 'dca', 'DCAR_008558' => 'dca', 'DCAR_028754' => 'dca', 'DCAR_028755' => 'dca', 'Dinv31218' => 'din', 'Dinv32371' => 'din', 'Dinv34250' => 'din', 'Dinv37156' => 'din', 'Dinv43704' => 'din', 'Duzib093G1811' => 'dzi', 'Duzib106G1622' => 'dzi', 'Duzib114G0504' => 'dzi', 'Duzib128G0338' => 'dzi', 'Duzib128G1577' => 'dzi', 'Duzib133G0104' => 'dzi', 'Duzib133G1080' => 'dzi', 'Duzib138G0324' => 'dzi', 'Duzib138G0394' => 'dzi', 'Duzib205G0122' => 'dzi', 'Duzib268G1020' => 'dzi', 'Duzib268G1359' => 'dzi', 'ECA232G3929' => 'eca', 'ECA236G2210' => 'eca', 'ECA236G2287' => 'eca', 'ECA240G4568' => 'eca', 'ECA247G0894' => 'eca', 'EL10Ac1g00200' => 'bvu', 'EL10Ac1g00886' => 'bvu', 'EL10As1g23091' => 'bvu', 'EL10As1g23092' => 'bvu', 'Eucgr.A01284' => 'egr', 'Eucgr.A01285' => 'egr', 'Eucgr.D02456' => 'egr', 'Eucgr.E00018' => 'egr', 'Eucgr.E01439' => 'egr', 'Eucgr.G02859' => 'egr', 'FAN01G0168' => 'fan', 'FAN01G0453' => 'fan', 'FAN01G2761' => 'fan', 'FAN02G1239' => 'fan', 'FAN03G0645' => 'fan', 'FAN03G2707' => 'fan', 'FAN03G2978' => 'fan', 'FAN04G0227' => 'fan', 'FAN06G0091' => 'fan', 'FAN06G1418' => 'fan', 'FAN06G1512' => 'fan', 'FAN06G1986' => 'fan', 'FAN06G2905' => 'fan', 'FAN06G4325' => 'fan', 'FAN08G0033' => 'fan', 'FAN09G0642' => 'fan', 'FAN10G1763' => 'fan', 'FAN10G2026' => 'fan', 'FAN10G2513' => 'fan', 'FAN10G3402' => 'fan', 'FAN10G3564' => 'fan', 'FAN10G3987' => 'fan', 'FAN13G1490' => 'fan', 'FAN14G5857' => 'fan', 'FAN18G1188' => 'fan', 'FvH4_5g00750' => 'fve', 'FvH4_6g13410' => 'fve', 'FvH4_7g11740' => 'fve', 'FvH4_7g17410' => 'fve', 'FvH4_7g18860' => 'fve', 'Glyma.01G099100' => 'gma', 'Glyma.01G142300' => 'gma', 'Glyma.03G025500' => 'gma', 'Glyma.03G069700' => 'gma', 'Glyma.03G260000' => 'gma', 'Glyma.09G269800' => 'gma', 'Glyma.10G208700' => 'gma', 'Glyma.18G220400' => 'gma', 'Glyma.20G182000' => 'gma', 'Gohir.A01G221726' => 'ghi', 'Gohir.A07G134600' => 'ghi', 'Gohir.A07G146000' => 'ghi', 'Gohir.A08G173900' => 'ghi', 'Gohir.A09G194900' => 'ghi', 'Gohir.A10G204100' => 'ghi', 'Gohir.A11G080600' => 'ghi', 'Gohir.A11G327500' => 'ghi', 'Gohir.A12G101800' => 'ghi', 'Gohir.D01G211200' => 'ghi', 'Gohir.D07G139200' => 'ghi', 'Gohir.D07G152100' => 'ghi', 'Gohir.D08G192600' => 'ghi', 'Gohir.D09G189200' => 'ghi', 'Gohir.D10G212000' => 'ghi', 'Gohir.D11G085200' => 'ghi', 'Gohir.D11G346400' => 'ghi', 'Gohir.D12G104800' => 'ghi', 'Gorai.001G151300' => 'gra', 'Gorai.001G174100' => 'gra', 'Gorai.002G257000' => 'gra', 'Gorai.004G202600' => 'gra', 'Gorai.007G090900' => 'gra', 'Gorai.007G376700' => 'gra', 'Gorai.008G114100' => 'gra', 'Gorai.011G237900' => 'gra', 'GSVIVG01005450001' => 'vvi', 'GSVIVG01016232001' => 'vvi', 'GSVIVG01026157001' => 'vvi', 'GSVIVG01027419001' => 'vvi', 'GSVIVG01027631001' => 'vvi', 'GSVIVG01034143001' => 'vvi', 'HanXRQChr03g0093921' => 'han', 'HanXRQChr04g0120001' => 'han', 'HanXRQChr04g0122561' => 'han', 'HanXRQChr09g0246851' => 'han', 'HanXRQChr10g0293311' => 'han', 'HanXRQChr13g0425231' => 'han', 'HanXRQChr16g0532571' => 'han', 'Haze_09050' => 'cav', 'Haze_15715' => 'cav', 'Haze_15716' => 'cav', 'Haze_16803' => 'cav', 'Haze_16850' => 'cav', 'Hma1.2p1_0301F.1_g118655' => 'hma', 'Hma1.2p1_0309F.1_g120590' => 'hma', 'Hma1.2p1_0936F.1_g238900' => 'hma', 'Hma1.2p1_3552F.1_g336740' => 'hma', 'HPP92_003520' => 'vpl', 'HPP92_006628' => 'vpl', 'HPP92_006645' => 'vpl', 'HPP92_014669' => 'vpl', 'HPP92_015077' => 'vpl', 'Hund16742' => 'sun', 'Hund17022' => 'sun', 'Lalb_Chr02g0152131' => 'lal', 'Lalb_Chr05g0225371' => 'lal', 'Lalb_Chr07g0189841' => 'lal', 'Lalb_Chr07g0192961' => 'lal', 'Lalb_Chr12g0208221' => 'lal', 'Lalb_Chr13g0291211' => 'lal', 'Lalb_Chr13g0291781' => 'lal', 'Lalb_Chr18g0044651' => 'lal', 'Lalb_Chr21g0313731' => 'lal', 'Lj1g0022533' => 'lja', 'Lj2A18T50' => 'lonja', 'Lj2A92G93' => 'lonja', 'Lj3A965T73' => 'lonja', 'Lj3g0000673' => 'lja', 'Lj3g0002666' => 'lja', 'Lj4g0016985' => 'lja', 'Lj5g0003625' => 'lja', 'Lj7A529G36' => 'lonja', 'Lj9A569T49' => 'lonja', 'Lj9A604T63' => 'lonja', 'Lsat_1_v5_gn_3_132060' => 'lsa', 'Lsat_1_v5_gn_4_68941' => 'lsa', 'Lsat_1_v5_gn_5_95580' => 'lsa', 'Lsat_1_v5_gn_7_161' => 'lsa', 'Lsat_1_v5_gn_7_7041' => 'lsa', 'Lsat_1_v5_gn_9_33481' => 'lsa', 'Lsat_1_v5_gn_9_68260' => 'lsa', 'Manes.01G073100' => 'mes', 'Manes.01G266300' => 'mes', 'Manes.02G033300' => 'mes', 'Manes.05G017900' => 'mes', 'Manes.05G046100' => 'mes', 'Manes.08G080900' => 'mes', 'Manes.10G049400' => 'mes', 'Mapoly0009s0186' => 'mpo', 'Mapoly0036s0118' => 'mpo', 'Mapoly0101s0046' => 'mpo', 'MBI04_g30218_MAGBIO' => 'mbi', 'MBI04_g35564_MAGBIO' => 'mbi', 'MBI12_g34011_MAGBIO' => 'mbi', 'MBI14_g04655_MAGBIO' => 'mbi', 'MCO07G653' => 'mco', 'MCO10G173' => 'mco', 'MD01G1087100' => 'mdo', 'MD01G1104200' => 'mdo', 'MD02G1205100' => 'mdo', 'MD04G1079200' => 'mdo', 'MD04G1131400' => 'mdo', 'MD07G1121600' => 'mdo', 'MD07G1157300' => 'mdo', 'MD07G1171000' => 'mdo', 'MD12G1144500' => 'mdo', 'Medtr1g094610' => 'mtr', 'Medtr4g021795' => 'mtr', 'Medtr4g023760' => 'mtr', 'Medtr7g118050' => 'mtr', 'MELO3C005582.2' => 'cme', 'MELO3C005989.2' => 'cme', 'MELO3C006192.2' => 'cme', 'MELO3C009248.2' => 'cme', 'MELO3C019817.2' => 'cme', 'Migut.B01625' => 'egut', 'Migut.B01915' => 'egut', 'Migut.F01721' => 'egut', 'Migut.J00314' => 'egut', 'MSTRG.20742' => 'ama', 'MSTRG.8134' => 'ama', 'Nitab4.5_0000096g0010' => 'nta', 'Nitab4.5_0000202g0030' => 'nta', 'Nitab4.5_0000216g0370' => 'nta', 'Nitab4.5_0000457g0230' => 'nta', 'Nitab4.5_0001702g0170' => 'nta', 'Nitab4.5_0003607g0010' => 'nta', 'Nitab4.5_0004917g0020' => 'nta', 'Nitab4.5_0007059g0010' => 'nta', 'Nitab4.5_0007184g0010' => 'nta', 'Nitab4.5_0007346g0020' => 'nta', 'Nn1g00410' => 'nnu', 'Nn1g01252' => 'nnu', 'Nn2g11168' => 'nnu', 'Nn2g13403' => 'nnu', 'Nn2g13760' => 'nnu', 'Nn4g26380' => 'nnu', 'Oeu000806.2' => 'oeu', 'Oeu005788.1' => 'oeu', 'Oeu006900.3' => 'oeu', 'Oeu007797.1' => 'oeu', 'Oeu011932.1' => 'oeu', 'Oeu022739.1' => 'oeu', 'Oeu037918.1' => 'oeu', 'Oeu055490.2' => 'oeu', 'Os01g0844400' => 'osa', 'Os02g0819100' => 'osa', 'Os03g0804300' => 'osa', 'Os05g0458000' => 'osa', 'Os07g0467800' => 'osa', 'Os12g0602200' => 'osa', 'Peaxi162Scf00013g03444' => 'pax', 'Peaxi162Scf00094g01120' => 'pax', 'Peaxi162Scf00191g01211' => 'pax', 'Peaxi162Scf00238g01110' => 'pax', 'Peaxi162Scf00330g00719' => 'pax', 'Peaxi162Scf00627g00018' => 'pax', 'PGR031G2686' => 'pgr', 'PGR042G0809' => 'pgr', 'PGR142G0193' => 'pgr', 'PGSC0003DMG400011066' => 'stu', 'PGSC0003DMG400012041' => 'stu', 'PGSC0003DMG400013678' => 'stu', 'PGSC0003DMG400023477' => 'stu', 'PGSC0003DMG400025956' => 'stu', 'PGSC0003DMG401019151' => 'stu', 'Phvul.006G116400' => 'pvu', 'Phvul.007G097300' => 'pvu', 'Phvul.010G015000' => 'pvu', 'Phvul.010G083900' => 'pvu', 'Potri.001G117100' => 'ptr', 'Potri.002G147300' => 'ptr', 'Potri.003G115600' => 'ptr', 'Potri.006G087400' => 'ptr', 'Potri.010G226100' => 'ptr', 'Potri.014G069200' => 'ptr', 'Potri.014G104000' => 'ptr', 'Potri.016G100200' => 'ptr', 'Pp3c10_20450' => 'ppa', 'Pp3c1_42400' => 'ppa', 'Pp3c3_24390' => 'ppa', 'Pp3c3_2860' => 'ppa', 'PRCOL_00003193' => 'pco', 'Prupe.2G144500' => 'ppe', 'Prupe.2G195700' => 'ppe', 'Prupe.2G209800' => 'ppe', 'Prupe.5G080000' => 'ppe', 'Prupe.6G257900' => 'ppe', 'Psat3g001160' => 'psa', 'Psat6g181880' => 'psa', 'Psat7g233720' => 'psa', 'PSO063G7587' => 'pso', 'PSO339G2145' => 'pso', 'PSO339G3369' => 'pso', 'PSO478G2747' => 'pso', 'PSO513G0140' => 'pso', 'PSO782G1614' => 'pso', 'PSO782G4889' => 'pso', 'PSO782G5485' => 'pso', 'PSO801G0241' => 'pso', 'QL07p048854' => 'qlo', 'QL08p046745' => 'qlo', 'QL08p052606' => 'qlo', 'QL08p053414' => 'qlo', 'QL08p054868' => 'qlo', 'RcHm_v2.0_Chr1g0350251' => 'rch', 'RcHm_v2.0_Chr1g0360851' => 'rch', 'RcHm_v2.0_Chr1g0362791' => 'rch', 'RcHm_v2.0_Chr3g0466281' => 'rch', 'RcHm_v2.0_Chr7g0201481' => 'rch', 'Rhsim01G0148600' => 'rsi', 'Rhsim05G0194400' => 'rsi', 'Rhsim07G0000700' => 'rsi', 'Rhsim07G0000800' => 'rsi', 'Rhsim07G0027900' => 'rsi', 'Rhsim09G0149500' => 'rsi', 'RhsimUnG0186900' => 'rsi', 'Sabra01G0089900' => 'sbr', 'Sabra02G0114700' => 'sbr', 'Sabra02G0116300' => 'sbr', 'Sabra03G0080100' => 'sbr', 'Sabra08G0024300' => 'sbr', 'Sabra10G0174300' => 'sbr', 'Sabra14G0048900' => 'sbr', 'Sabra14G0076500' => 'sbr', 'SalBow5G2513' => 'sbo', 'Sc01g0002300' => 'sci', 'Sc01g0004450' => 'sci', 'Sc06g0001680' => 'sci', 'Sc23g0003580' => 'sci', 'Sed0000913' => 'sed', 'Sed0001655' => 'sed', 'Sed0007745' => 'sed', 'Sed0010951' => 'sed', 'Sed0017599' => 'sed', 'Sed0021405' => 'sed', 'Sed0022810' => 'sed', 'SEGI_07099' => 'sgi', 'SEGI_11931' => 'sgi', 'SEGI_13187' => 'sgi', 'SEGI_29958' => 'sgi', 'SEGI_36351' => 'sgi', 'SGA_v2.0_scaffold126G33770' => 'sas', 'SGA_v2.0_scaffold153G37003' => 'sas', 'SGA_v2.0_scaffold2G01359' => 'sas', 'SGA_v2.0_scaffold5G03064' => 'sas', 'SGA_v2.0_scaffold95G28903' => 'sas', 'SHI12701' => 'shi', 'SHI26410' => 'shi', 'SHI38997' => 'shi', 'SHI53759' => 'shi', 'SHI53886' => 'shi', 'SHI54714' => 'shi', 'SMO011G0041' => 'smo', 'SMO146G0251' => 'smo', 'SMO160G0004' => 'smo', 'SMO174G0057' => 'smo', 'SMO244G0089' => 'smo', 'SMO296G0011' => 'smo', 'Solyc01g091280.3' => 'sly', 'Solyc05g047610.3' => 'sly', 'Solyc05g047640.3' => 'sly', 'Solyc05g055630.3' => 'sly', 'Solyc10g018160.2' => 'sly', 'Solyc10g084820.2' => 'sly', 'Solyc10g086565.2' => 'sly', 'Sopen01g037030' => 'spe', 'Sopen05g027920' => 'spe', 'Sopen05g034070' => 'spe', 'Sopen10g007260' => 'spe', 'Sopen10g034260' => 'spe', 'Sopen10g035950' => 'spe', 'Sp3g07710' => 'spa', 'Sp4g27420' => 'spa', 'Sp5g02450' => 'spa', 'Sp6g01280' => 'spa', 'Sp6g38480' => 'spa', 'Sp7g20780' => 'spa', 'TAR374G1413' => 'tar', 'TAR623G1777' => 'tar', 'TAR629G2370' => 'tar', 'TAR633G1759' => 'tar', 'TAR636G3387' => 'tar', 'THA.LOC104802447' => 'tha', 'THA.LOC104813916' => 'tha', 'THA.LOC104816423' => 'tha', 'THA.LOC104817246' => 'tha', 'THA.LOC104825895' => 'tha', 'Thecc.01G335200' => 'tca', 'Thecc.01G377400' => 'tca', 'Thecc.03G262200' => 'tca', 'Thecc.05G036800' => 'tca', 'Thecc.10G080500' => 'tca', 'Thecc.10G080800' => 'tca', 'Thhalv10001560m.g' => 'esa', 'Thhalv10006120m.g' => 'esa', 'Thhalv10014375m.g' => 'esa', 'Thhalv10021264m.g' => 'esa', 'Thhalv10028856m.g' => 'esa', 'TPR.G1914' => 'tpr', 'TPR.G4757' => 'tpr', 'TPR.G5595' => 'tpr', 'TWI14G0952' => 'twi', 'TWI14G1307' => 'twi', 'TWI38G2143' => 'twi', 'TWI59G0826' => 'twi', 'TWI77G0527' => 'twi', 'TWI81G0150' => 'twi', 'unitig_21.g21018' => 'ugi', 'unitig_26.g9725' => 'ugi', 'unitig_744.g24653' => 'ugi', 'unitig_749.g13778' => 'ugi', 'unitig_899.g15035' => 'ugi', 'vmacro04296' => 'vma', 'vmacro04852' => 'vma', 'vmacro13404' => 'vma', 'vmacro20169' => 'vma', 'vmacro21014' => 'vma', 'VMungo0331G0237' => 'vmu', 'VMungo0331G0706' => 'vmu', 'VMungo0331G1361' => 'vmu', 'VMungo0331G1489' => 'vmu', 'VMungo0540G1037' => 'vmu', 'VMungo0720G2487' => 'vmu', 'VMungo0720G2721' => 'vmu', 'Zm00001eb086860' => 'zma', 'Zm00001eb104760' => 'zma', 'Zm00001eb148220' => 'zma', 'Zm00001eb259030' => 'zma', 'Zm00001eb289590' => 'zma', 'Zm00001eb420150' => 'zma' ), 'gf_id' => 'HOM05D000968', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000968' ), 'data_identifier' => 'HOM05D000968', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000968', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p31690' => 'bna', 'A03p36040' => 'bna', 'A03p53730' => 'bna', 'A04p01410' => 'bna', 'A05p05420' => 'bna', 'A05p39630' => 'bna', 'A05p39640' => 'bna', 'A09p00970' => 'bna', 'A09p53060' => 'bna', 'A10p31890' => 'bna', 'Aa31LG10G15040' => 'aar', 'Aa31LG1G21090' => 'aar', 'Aa31LG1G26900' => 'aar', 'Aa31LG3G1820' => 'aar', 'Aa31LG5G1100' => 'aar', 'Aa31LG6G4740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2265' => 'aag', 'Actinidia07998' => 'ach', 'Actinidia11266' => 'ach', 'Actinidia12682' => 'ach', 'Actinidia26479' => 'ach', 'Actinidia31406' => 'ach', 'Actinidia32437' => 'ach', 'Actinidia38862' => 'ach', 'Ah.05g174230' => 'amhyb', 'Ah.05g179070' => 'amhyb', 'Ah.05g179090' => 'amhyb', 'Ah.12g059950' => 'amhyb', 'AL3G20480' => 'aly', 'AL4G44520' => 'aly', 'AL5G43110' => 'aly', 'AL6G13890' => 'aly', 'AL6G52620' => 'aly', 'AL7G30830' => 'aly', 'Aqoxy1G00899' => 'aox', 'Aqoxy5G04333' => 'aox', 'Aqoxy7G00641' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3IZ0NN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4EF6AW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W9P8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79GA3M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C43NQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFCU6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G95YVJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCHK29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LU1UG8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX91RN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGB4B1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8DA0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9H7JI' => 'arhy', 'AT3G09320' => 'ath', 'AT3G60800' => 'ath', 'AT4G00840' => 'ath', 'AT4G22750' => 'ath', 'AT5G04270' => 'ath', 'ATR0090G003' => 'atr', 'ATR0559G349' => 'atr', 'ATR0680G261' => 'atr', 'ATR0810G048' => 'atr', 'Atru.chr12.831' => 'acertr', 'Atru.chr5.303' => 'acertr', 'Atru.chr5.748' => 'acertr', 'Atru.chr8.1999' => 'acertr', 'Atru.chr9.1436' => 'acertr', 'AUR62004211' => 'cqu', 'AUR62004548' => 'cqu', 'AUR62013637' => 'cqu', 'AUR62022662' => 'cqu', 'AUR62025777' => 'cqu', 'AUR62042386' => 'cqu', 'BcaB01g02310' => 'bca', 'BcaB01g06062' => 'bca', 'BcaB02g08975' => 'bca', 'BcaB02g08980' => 'bca', 'BcaC01g04228' => 'bca', 'BcaC01g06830' => 'bca', 'BcaC02g10186' => 'bca', 'BcaC02g12214' => 'bca', 'BcaC04g24101' => 'bca', 'BcaC05g29520' => 'bca', 'BcaC05g29661' => 'bca', 'BcaC06g32130' => 'bca', 'BcaC06g32131' => 'bca', 'BcaC07g40601' => 'bca', 'BcaC07g42641' => 'bca', 'BcaNung01038' => 'bca', 'BcaNung01676' => 'bca', 'BcaNung02480' => 'bca', 'BcaNung07376' => 'bca', 'BolC3t16146H' => 'bol', 'BolC3t16637H' => 'bol', 'BolC4t22257H' => 'bol', 'BolC4t24728H' => 'bol', 'BolC5t34517H' => 'bol', 'BolC7t45703H' => 'bol', 'BolC8t51166H' => 'bol', 'BolC9t53038H' => 'bol', 'BolC9t60000H' => 'bol', 'BraA01t01345Z' => 'bra', 'BraA01t01346Z' => 'bra', 'BraA01t01348Z' => 'bra', 'BraA03t12347Z' => 'bra', 'BraA03t12775Z' => 'bra', 'BraA03t14439Z' => 'bra', 'BraA04t15860Z' => 'bra', 'BraA05t19511Z' => 'bra', 'BraA05t22746Z' => 'bra', 'BraA09t35767Z' => 'bra', 'BraA09t40732Z' => 'bra', 'BraA10t45233Z' => 'bra', 'C03p38720' => 'bna', 'C03p43680' => 'bna', 'C04p06350' => 'bna', 'C04p31800' => 'bna', 'C05p58680' => 'bna', 'C07p52110' => 'bna', 'C08p35760' => 'bna', 'C09p01050' => 'bna', 'C09p72600' => 'bna', 'CAN.G106.2' => 'can', 'CAN.G1482.1' => 'can', 'CAN.G324.12' => 'can', 'CAN.G388.20' => 'can', 'CAN.G412.7' => 'can', 'CAN.G694.32' => 'can', 'CAN.G92.12' => 'can', 'CANSAT11G2353' => 'cansat', 'CANSAT21G1398' => 'cansat', 'CANSAT56G2456' => 'cansat', 'CANSAT56G3031' => 'cansat', 'CANSAT56G4539' => 'cansat', 'CARHR083680' => 'chi', 'CARHR171190' => 'chi', 'CARHR209010' => 'chi', 'CARHR229680' => 'chi', 'CARHR249490' => 'chi', 'Carub.0003s0844' => 'cru', 'Carub.0005s2755' => 'cru', 'Carub.0006s0322' => 'cru', 'Carub.0006s3586' => 'cru', 'Carub.0007s1855' => 'cru', 'Ca_07808_v3' => 'car', 'Ca_09535_v3' => 'car', 'Ca_10548_v3' => 'car', 'Ca_19913_v3' => 'car', 'Ca_19916_v3' => 'car', 'Ca_19975_v3' => 'car', 'CBR_g22876' => 'cbr', 'CBR_g22879' => 'cbr', 'CBR_g38491' => 'cbr', 'CBR_g54185' => 'cbr', 'CBR_g54190' => 'cbr', 'Cc02_g11020' => 'ccan', 'Cc02_g23920' => 'ccan', 'Cc02_g39860' => 'ccan', 'Cc02_g39870' => 'ccan', 'Cc03_g06760' => 'ccan', 'Cc06_g02450' => 'ccan', 'Cc09_g09450' => 'ccan', 'CDE02G1959' => 'cde', 'CDE04G0600' => 'cde', 'CDE07G1996' => 'cde', 'CDE07G2078' => 'cde', 'CDE11G0611' => 'cde', 'Cfa001683' => 'cfa', 'Cfa001734' => 'cfa', 'Cfa001737' => 'cfa', 'Cfa003751' => 'cfa', 'Cfa012019' => 'cfa', 'Cfa017353' => 'cfa', 'Cfa017732' => 'cfa', 'Cfa022464' => 'cfa', 'Ciclev10012400m.g' => 'ccl', 'Ciclev10021242m.g' => 'ccl', 'Ciclev10021302m.g' => 'ccl', 'Ciclev10021463m.g' => 'ccl', 'Ciclev10032359m.g' => 'ccl', 'CiPaw.01G081000' => 'cil', 'CiPaw.01G262500' => 'cil', 'CiPaw.01G269800' => 'cil', 'CiPaw.02G168400' => 'cil', 'CiPaw.05G119500' => 'cil', 'CiPaw.11G147300' => 'cil', 'ClCG01G003630' => 'cla', 'ClCG05G000510' => 'cla', 'ClCG05G002300' => 'cla', 'ClCG08G007650' => 'cla', 'ClCG10G021250' => 'cla', 'COL.COLO4_06218' => 'col', 'COL.COLO4_12538' => 'col', 'COL.COLO4_14775' => 'col', 'COL.COLO4_23875' => 'col', 'Cpa.g.sc141.16' => 'cpa', 'Cpa.g.sc169.16' => 'cpa', 'Cpa.g.sc244.4' => 'cpa', 'Cpa.g.sc244.5' => 'cpa', 'Cpa.g.sc29.87' => 'cpa', 'Cpa.g.sc53.115' => 'cpa', 'Cre03.g207502' => 'cre', 'Cre06.g277000' => 'cre', 'Cre09.g394050' => 'cre', 'CsaV3_3G007680' => 'csa', 'CsaV3_3G009710' => 'csa', 'CsaV3_3G034790' => 'csa', 'CsaV3_5G003750' => 'csa', 'CsaV3_6G036620' => 'csa', 'CSS0002288' => 'camsi', 'CSS0011250' => 'camsi', 'CSS0021619' => 'camsi', 'CSS0046701' => 'camsi', 'DCAR_006420' => 'dca', 'DCAR_006865' => 'dca', 'DCAR_008558' => 'dca', 'DCAR_028754' => 'dca', 'DCAR_028755' => 'dca', 'Dinv31218' => 'din', 'Dinv32371' => 'din', 'Dinv34250' => 'din', 'Dinv37156' => 'din', 'Dinv43704' => 'din', 'Duzib093G1811' => 'dzi', 'Duzib106G1622' => 'dzi', 'Duzib114G0504' => 'dzi', 'Duzib128G0338' => 'dzi', 'Duzib128G1577' => 'dzi', 'Duzib133G0104' => 'dzi', 'Duzib133G1080' => 'dzi', 'Duzib138G0324' => 'dzi', 'Duzib138G0394' => 'dzi', 'Duzib205G0122' => 'dzi', 'Duzib268G1020' => 'dzi', 'Duzib268G1359' => 'dzi', 'ECA232G3929' => 'eca', 'ECA236G2210' => 'eca', 'ECA236G2287' => 'eca', 'ECA240G4568' => 'eca', 'ECA247G0894' => 'eca', 'EL10Ac1g00200' => 'bvu', 'EL10Ac1g00886' => 'bvu', 'EL10As1g23091' => 'bvu', 'EL10As1g23092' => 'bvu', 'Eucgr.A01284' => 'egr', 'Eucgr.A01285' => 'egr', 'Eucgr.D02456' => 'egr', 'Eucgr.E00018' => 'egr', 'Eucgr.E01439' => 'egr', 'Eucgr.G02859' => 'egr', 'FAN01G0168' => 'fan', 'FAN01G0453' => 'fan', 'FAN01G2761' => 'fan', 'FAN02G1239' => 'fan', 'FAN03G0645' => 'fan', 'FAN03G2707' => 'fan', 'FAN03G2978' => 'fan', 'FAN04G0227' => 'fan', 'FAN06G0091' => 'fan', 'FAN06G1418' => 'fan', 'FAN06G1512' => 'fan', 'FAN06G1986' => 'fan', 'FAN06G2905' => 'fan', 'FAN06G4325' => 'fan', 'FAN08G0033' => 'fan', 'FAN09G0642' => 'fan', 'FAN10G1763' => 'fan', 'FAN10G2026' => 'fan', 'FAN10G2513' => 'fan', 'FAN10G3402' => 'fan', 'FAN10G3564' => 'fan', 'FAN10G3987' => 'fan', 'FAN13G1490' => 'fan', 'FAN14G5857' => 'fan', 'FAN18G1188' => 'fan', 'FvH4_5g00750' => 'fve', 'FvH4_6g13410' => 'fve', 'FvH4_7g11740' => 'fve', 'FvH4_7g17410' => 'fve', 'FvH4_7g18860' => 'fve', 'Glyma.01G099100' => 'gma', 'Glyma.01G142300' => 'gma', 'Glyma.03G025500' => 'gma', 'Glyma.03G069700' => 'gma', 'Glyma.03G260000' => 'gma', 'Glyma.09G269800' => 'gma', 'Glyma.10G208700' => 'gma', 'Glyma.18G220400' => 'gma', 'Glyma.20G182000' => 'gma', 'Gohir.A01G221726' => 'ghi', 'Gohir.A07G134600' => 'ghi', 'Gohir.A07G146000' => 'ghi', 'Gohir.A08G173900' => 'ghi', 'Gohir.A09G194900' => 'ghi', 'Gohir.A10G204100' => 'ghi', 'Gohir.A11G080600' => 'ghi', 'Gohir.A11G327500' => 'ghi', 'Gohir.A12G101800' => 'ghi', 'Gohir.D01G211200' => 'ghi', 'Gohir.D07G139200' => 'ghi', 'Gohir.D07G152100' => 'ghi', 'Gohir.D08G192600' => 'ghi', 'Gohir.D09G189200' => 'ghi', 'Gohir.D10G212000' => 'ghi', 'Gohir.D11G085200' => 'ghi', 'Gohir.D11G346400' => 'ghi', 'Gohir.D12G104800' => 'ghi', 'Gorai.001G151300' => 'gra', 'Gorai.001G174100' => 'gra', 'Gorai.002G257000' => 'gra', 'Gorai.004G202600' => 'gra', 'Gorai.007G090900' => 'gra', 'Gorai.007G376700' => 'gra', 'Gorai.008G114100' => 'gra', 'Gorai.011G237900' => 'gra', 'GSVIVG01005450001' => 'vvi', 'GSVIVG01016232001' => 'vvi', 'GSVIVG01026157001' => 'vvi', 'GSVIVG01027419001' => 'vvi', 'GSVIVG01027631001' => 'vvi', 'GSVIVG01034143001' => 'vvi', 'HanXRQChr03g0093921' => 'han', 'HanXRQChr04g0120001' => 'han', 'HanXRQChr04g0122561' => 'han', 'HanXRQChr09g0246851' => 'han', 'HanXRQChr10g0293311' => 'han', 'HanXRQChr13g0425231' => 'han', 'HanXRQChr16g0532571' => 'han', 'Haze_09050' => 'cav', 'Haze_15715' => 'cav', 'Haze_15716' => 'cav', 'Haze_16803' => 'cav', 'Haze_16850' => 'cav', 'Hma1.2p1_0301F.1_g118655' => 'hma', 'Hma1.2p1_0309F.1_g120590' => 'hma', 'Hma1.2p1_0936F.1_g238900' => 'hma', 'Hma1.2p1_3552F.1_g336740' => 'hma', 'HPP92_003520' => 'vpl', 'HPP92_006628' => 'vpl', 'HPP92_006645' => 'vpl', 'HPP92_014669' => 'vpl', 'HPP92_015077' => 'vpl', 'Hund16742' => 'sun', 'Hund17022' => 'sun', 'Lalb_Chr02g0152131' => 'lal', 'Lalb_Chr05g0225371' => 'lal', 'Lalb_Chr07g0189841' => 'lal', 'Lalb_Chr07g0192961' => 'lal', 'Lalb_Chr12g0208221' => 'lal', 'Lalb_Chr13g0291211' => 'lal', 'Lalb_Chr13g0291781' => 'lal', 'Lalb_Chr18g0044651' => 'lal', 'Lalb_Chr21g0313731' => 'lal', 'Lj1g0022533' => 'lja', 'Lj2A18T50' => 'lonja', 'Lj2A92G93' => 'lonja', 'Lj3A965T73' => 'lonja', 'Lj3g0000673' => 'lja', 'Lj3g0002666' => 'lja', 'Lj4g0016985' => 'lja', 'Lj5g0003625' => 'lja', 'Lj7A529G36' => 'lonja', 'Lj9A569T49' => 'lonja', 'Lj9A604T63' => 'lonja', 'Lsat_1_v5_gn_3_132060' => 'lsa', 'Lsat_1_v5_gn_4_68941' => 'lsa', 'Lsat_1_v5_gn_5_95580' => 'lsa', 'Lsat_1_v5_gn_7_161' => 'lsa', 'Lsat_1_v5_gn_7_7041' => 'lsa', 'Lsat_1_v5_gn_9_33481' => 'lsa', 'Lsat_1_v5_gn_9_68260' => 'lsa', 'Manes.01G073100' => 'mes', 'Manes.01G266300' => 'mes', 'Manes.02G033300' => 'mes', 'Manes.05G017900' => 'mes', 'Manes.05G046100' => 'mes', 'Manes.08G080900' => 'mes', 'Manes.10G049400' => 'mes', 'Mapoly0009s0186' => 'mpo', 'Mapoly0036s0118' => 'mpo', 'Mapoly0101s0046' => 'mpo', 'MBI04_g30218_MAGBIO' => 'mbi', 'MBI04_g35564_MAGBIO' => 'mbi', 'MBI12_g34011_MAGBIO' => 'mbi', 'MBI14_g04655_MAGBIO' => 'mbi', 'MCO07G653' => 'mco', 'MCO10G173' => 'mco', 'MD01G1087100' => 'mdo', 'MD01G1104200' => 'mdo', 'MD02G1205100' => 'mdo', 'MD04G1079200' => 'mdo', 'MD04G1131400' => 'mdo', 'MD07G1121600' => 'mdo', 'MD07G1157300' => 'mdo', 'MD07G1171000' => 'mdo', 'MD12G1144500' => 'mdo', 'Medtr1g094610' => 'mtr', 'Medtr4g021795' => 'mtr', 'Medtr4g023760' => 'mtr', 'Medtr7g118050' => 'mtr', 'MELO3C005582.2' => 'cme', 'MELO3C005989.2' => 'cme', 'MELO3C006192.2' => 'cme', 'MELO3C009248.2' => 'cme', 'MELO3C019817.2' => 'cme', 'Migut.B01625' => 'egut', 'Migut.B01915' => 'egut', 'Migut.F01721' => 'egut', 'Migut.J00314' => 'egut', 'MSTRG.20742' => 'ama', 'MSTRG.8134' => 'ama', 'Nitab4.5_0000096g0010' => 'nta', 'Nitab4.5_0000202g0030' => 'nta', 'Nitab4.5_0000216g0370' => 'nta', 'Nitab4.5_0000457g0230' => 'nta', 'Nitab4.5_0001702g0170' => 'nta', 'Nitab4.5_0003607g0010' => 'nta', 'Nitab4.5_0004917g0020' => 'nta', 'Nitab4.5_0007059g0010' => 'nta', 'Nitab4.5_0007184g0010' => 'nta', 'Nitab4.5_0007346g0020' => 'nta', 'Nn1g00410' => 'nnu', 'Nn1g01252' => 'nnu', 'Nn2g11168' => 'nnu', 'Nn2g13403' => 'nnu', 'Nn2g13760' => 'nnu', 'Nn4g26380' => 'nnu', 'Oeu000806.2' => 'oeu', 'Oeu005788.1' => 'oeu', 'Oeu006900.3' => 'oeu', 'Oeu007797.1' => 'oeu', 'Oeu011932.1' => 'oeu', 'Oeu022739.1' => 'oeu', 'Oeu037918.1' => 'oeu', 'Oeu055490.2' => 'oeu', 'Os01g0844400' => 'osa', 'Os02g0819100' => 'osa', 'Os03g0804300' => 'osa', 'Os05g0458000' => 'osa', 'Os07g0467800' => 'osa', 'Os12g0602200' => 'osa', 'Peaxi162Scf00013g03444' => 'pax', 'Peaxi162Scf00094g01120' => 'pax', 'Peaxi162Scf00191g01211' => 'pax', 'Peaxi162Scf00238g01110' => 'pax', 'Peaxi162Scf00330g00719' => 'pax', 'Peaxi162Scf00627g00018' => 'pax', 'PGR031G2686' => 'pgr', 'PGR042G0809' => 'pgr', 'PGR142G0193' => 'pgr', 'PGSC0003DMG400011066' => 'stu', 'PGSC0003DMG400012041' => 'stu', 'PGSC0003DMG400013678' => 'stu', 'PGSC0003DMG400023477' => 'stu', 'PGSC0003DMG400025956' => 'stu', 'PGSC0003DMG401019151' => 'stu', 'Phvul.006G116400' => 'pvu', 'Phvul.007G097300' => 'pvu', 'Phvul.010G015000' => 'pvu', 'Phvul.010G083900' => 'pvu', 'Potri.001G117100' => 'ptr', 'Potri.002G147300' => 'ptr', 'Potri.003G115600' => 'ptr', 'Potri.006G087400' => 'ptr', 'Potri.010G226100' => 'ptr', 'Potri.014G069200' => 'ptr', 'Potri.014G104000' => 'ptr', 'Potri.016G100200' => 'ptr', 'Pp3c10_20450' => 'ppa', 'Pp3c1_42400' => 'ppa', 'Pp3c3_24390' => 'ppa', 'Pp3c3_2860' => 'ppa', 'PRCOL_00003193' => 'pco', 'Prupe.2G144500' => 'ppe', 'Prupe.2G195700' => 'ppe', 'Prupe.2G209800' => 'ppe', 'Prupe.5G080000' => 'ppe', 'Prupe.6G257900' => 'ppe', 'Psat3g001160' => 'psa', 'Psat6g181880' => 'psa', 'Psat7g233720' => 'psa', 'PSO063G7587' => 'pso', 'PSO339G2145' => 'pso', 'PSO339G3369' => 'pso', 'PSO478G2747' => 'pso', 'PSO513G0140' => 'pso', 'PSO782G1614' => 'pso', 'PSO782G4889' => 'pso', 'PSO782G5485' => 'pso', 'PSO801G0241' => 'pso', 'QL07p048854' => 'qlo', 'QL08p046745' => 'qlo', 'QL08p052606' => 'qlo', 'QL08p053414' => 'qlo', 'QL08p054868' => 'qlo', 'RcHm_v2.0_Chr1g0350251' => 'rch', 'RcHm_v2.0_Chr1g0360851' => 'rch', 'RcHm_v2.0_Chr1g0362791' => 'rch', 'RcHm_v2.0_Chr3g0466281' => 'rch', 'RcHm_v2.0_Chr7g0201481' => 'rch', 'Rhsim01G0148600' => 'rsi', 'Rhsim05G0194400' => 'rsi', 'Rhsim07G0000700' => 'rsi', 'Rhsim07G0000800' => 'rsi', 'Rhsim07G0027900' => 'rsi', 'Rhsim09G0149500' => 'rsi', 'RhsimUnG0186900' => 'rsi', 'Sabra01G0089900' => 'sbr', 'Sabra02G0114700' => 'sbr', 'Sabra02G0116300' => 'sbr', 'Sabra03G0080100' => 'sbr', 'Sabra08G0024300' => 'sbr', 'Sabra10G0174300' => 'sbr', 'Sabra14G0048900' => 'sbr', 'Sabra14G0076500' => 'sbr', 'SalBow5G2513' => 'sbo', 'Sc01g0002300' => 'sci', 'Sc01g0004450' => 'sci', 'Sc06g0001680' => 'sci', 'Sc23g0003580' => 'sci', 'Sed0000913' => 'sed', 'Sed0001655' => 'sed', 'Sed0007745' => 'sed', 'Sed0010951' => 'sed', 'Sed0017599' => 'sed', 'Sed0021405' => 'sed', 'Sed0022810' => 'sed', 'SEGI_07099' => 'sgi', 'SEGI_11931' => 'sgi', 'SEGI_13187' => 'sgi', 'SEGI_29958' => 'sgi', 'SEGI_36351' => 'sgi', 'SGA_v2.0_scaffold126G33770' => 'sas', 'SGA_v2.0_scaffold153G37003' => 'sas', 'SGA_v2.0_scaffold2G01359' => 'sas', 'SGA_v2.0_scaffold5G03064' => 'sas', 'SGA_v2.0_scaffold95G28903' => 'sas', 'SHI12701' => 'shi', 'SHI26410' => 'shi', 'SHI38997' => 'shi', 'SHI53759' => 'shi', 'SHI53886' => 'shi', 'SHI54714' => 'shi', 'SMO011G0041' => 'smo', 'SMO146G0251' => 'smo', 'SMO160G0004' => 'smo', 'SMO174G0057' => 'smo', 'SMO244G0089' => 'smo', 'SMO296G0011' => 'smo', 'Solyc01g091280.3' => 'sly', 'Solyc05g047610.3' => 'sly', 'Solyc05g047640.3' => 'sly', 'Solyc05g055630.3' => 'sly', 'Solyc10g018160.2' => 'sly', 'Solyc10g084820.2' => 'sly', 'Solyc10g086565.2' => 'sly', 'Sopen01g037030' => 'spe', 'Sopen05g027920' => 'spe', 'Sopen05g034070' => 'spe', 'Sopen10g007260' => 'spe', 'Sopen10g034260' => 'spe', 'Sopen10g035950' => 'spe', 'Sp3g07710' => 'spa', 'Sp4g27420' => 'spa', 'Sp5g02450' => 'spa', 'Sp6g01280' => 'spa', 'Sp6g38480' => 'spa', 'Sp7g20780' => 'spa', 'TAR374G1413' => 'tar', 'TAR623G1777' => 'tar', 'TAR629G2370' => 'tar', 'TAR633G1759' => 'tar', 'TAR636G3387' => 'tar', 'THA.LOC104802447' => 'tha', 'THA.LOC104813916' => 'tha', 'THA.LOC104816423' => 'tha', 'THA.LOC104817246' => 'tha', 'THA.LOC104825895' => 'tha', 'Thecc.01G335200' => 'tca', 'Thecc.01G377400' => 'tca', 'Thecc.03G262200' => 'tca', 'Thecc.05G036800' => 'tca', 'Thecc.10G080500' => 'tca', 'Thecc.10G080800' => 'tca', 'Thhalv10001560m.g' => 'esa', 'Thhalv10006120m.g' => 'esa', 'Thhalv10014375m.g' => 'esa', 'Thhalv10021264m.g' => 'esa', 'Thhalv10028856m.g' => 'esa', 'TPR.G1914' => 'tpr', 'TPR.G4757' => 'tpr', 'TPR.G5595' => 'tpr', 'TWI14G0952' => 'twi', 'TWI14G1307' => 'twi', 'TWI38G2143' => 'twi', 'TWI59G0826' => 'twi', 'TWI77G0527' => 'twi', 'TWI81G0150' => 'twi', 'unitig_21.g21018' => 'ugi', 'unitig_26.g9725' => 'ugi', 'unitig_744.g24653' => 'ugi', 'unitig_749.g13778' => 'ugi', 'unitig_899.g15035' => 'ugi', 'vmacro04296' => 'vma', 'vmacro04852' => 'vma', 'vmacro13404' => 'vma', 'vmacro20169' => 'vma', 'vmacro21014' => 'vma', 'VMungo0331G0237' => 'vmu', 'VMungo0331G0706' => 'vmu', 'VMungo0331G1361' => 'vmu', 'VMungo0331G1489' => 'vmu', 'VMungo0540G1037' => 'vmu', 'VMungo0720G2487' => 'vmu', 'VMungo0720G2721' => 'vmu', 'Zm00001eb086860' => 'zma', 'Zm00001eb104760' => 'zma', 'Zm00001eb148220' => 'zma', 'Zm00001eb259030' => 'zma', 'Zm00001eb289590' => 'zma', 'Zm00001eb420150' => 'zma' ) $gf_id = 'HOM05D000968' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000968' ) $data_identifier = 'HOM05D000968' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 19, 'bol' => (int) 9, 'bra' => (int) 12, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 5, 'ccan' => (int) 7, 'cde' => (int) 5, 'cfa' => (int) 8, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 4, 'dca' => (int) 5, 'din' => (int) 5, 'dzi' => (int) 12, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 25, 'fve' => (int) 5, 'gma' => (int) 9, 'ghi' => (int) 18, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 7, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 5, 'sun' => (int) 2, 'lal' => (int) 9, 'lja' => (int) 5, 'lonja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 9, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 2, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 3, 'stu' => (int) 6, 'pvu' => (int) 4, 'ptr' => (int) 8, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 3, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 1, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 5, 'sas' => (int) 5, 'shi' => (int) 6, 'smo' => (int) 6, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 3, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420150' $species_info = array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ) $local_species = 'csa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000968', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p31690' => 'bna', 'A03p36040' => 'bna', 'A03p53730' => 'bna', 'A04p01410' => 'bna', 'A05p05420' => 'bna', 'A05p39630' => 'bna', 'A05p39640' => 'bna', 'A09p00970' => 'bna', 'A09p53060' => 'bna', 'A10p31890' => 'bna', 'Aa31LG10G15040' => 'aar', 'Aa31LG1G21090' => 'aar', 'Aa31LG1G26900' => 'aar', 'Aa31LG3G1820' => 'aar', 'Aa31LG5G1100' => 'aar', 'Aa31LG6G4740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2265' => 'aag', 'Actinidia07998' => 'ach', 'Actinidia11266' => 'ach', 'Actinidia12682' => 'ach', 'Actinidia26479' => 'ach', 'Actinidia31406' => 'ach', 'Actinidia32437' => 'ach', 'Actinidia38862' => 'ach', 'Ah.05g174230' => 'amhyb', 'Ah.05g179070' => 'amhyb', 'Ah.05g179090' => 'amhyb', 'Ah.12g059950' => 'amhyb', 'AL3G20480' => 'aly', 'AL4G44520' => 'aly', 'AL5G43110' => 'aly', 'AL6G13890' => 'aly', 'AL6G52620' => 'aly', 'AL7G30830' => 'aly', 'Aqoxy1G00899' => 'aox', 'Aqoxy5G04333' => 'aox', 'Aqoxy7G00641' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3IZ0NN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4EF6AW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W9P8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79GA3M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C43NQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFCU6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G95YVJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCHK29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LU1UG8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX91RN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGB4B1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8DA0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9H7JI' => 'arhy', 'AT3G09320' => 'ath', 'AT3G60800' => 'ath', 'AT4G00840' => 'ath', 'AT4G22750' => 'ath', 'AT5G04270' => 'ath', 'ATR0090G003' => 'atr', 'ATR0559G349' => 'atr', 'ATR0680G261' => 'atr', 'ATR0810G048' => 'atr', 'Atru.chr12.831' => 'acertr', 'Atru.chr5.303' => 'acertr', 'Atru.chr5.748' => 'acertr', 'Atru.chr8.1999' => 'acertr', 'Atru.chr9.1436' => 'acertr', 'AUR62004211' => 'cqu', 'AUR62004548' => 'cqu', 'AUR62013637' => 'cqu', 'AUR62022662' => 'cqu', 'AUR62025777' => 'cqu', 'AUR62042386' => 'cqu', 'BcaB01g02310' => 'bca', 'BcaB01g06062' => 'bca', 'BcaB02g08975' => 'bca', 'BcaB02g08980' => 'bca', 'BcaC01g04228' => 'bca', 'BcaC01g06830' => 'bca', 'BcaC02g10186' => 'bca', 'BcaC02g12214' => 'bca', 'BcaC04g24101' => 'bca', 'BcaC05g29520' => 'bca', 'BcaC05g29661' => 'bca', 'BcaC06g32130' => 'bca', 'BcaC06g32131' => 'bca', 'BcaC07g40601' => 'bca', 'BcaC07g42641' => 'bca', 'BcaNung01038' => 'bca', 'BcaNung01676' => 'bca', 'BcaNung02480' => 'bca', 'BcaNung07376' => 'bca', 'BolC3t16146H' => 'bol', 'BolC3t16637H' => 'bol', 'BolC4t22257H' => 'bol', 'BolC4t24728H' => 'bol', 'BolC5t34517H' => 'bol', 'BolC7t45703H' => 'bol', 'BolC8t51166H' => 'bol', 'BolC9t53038H' => 'bol', 'BolC9t60000H' => 'bol', 'BraA01t01345Z' => 'bra', 'BraA01t01346Z' => 'bra', 'BraA01t01348Z' => 'bra', 'BraA03t12347Z' => 'bra', 'BraA03t12775Z' => 'bra', 'BraA03t14439Z' => 'bra', 'BraA04t15860Z' => 'bra', 'BraA05t19511Z' => 'bra', 'BraA05t22746Z' => 'bra', 'BraA09t35767Z' => 'bra', 'BraA09t40732Z' => 'bra', 'BraA10t45233Z' => 'bra', 'C03p38720' => 'bna', 'C03p43680' => 'bna', 'C04p06350' => 'bna', 'C04p31800' => 'bna', 'C05p58680' => 'bna', 'C07p52110' => 'bna', 'C08p35760' => 'bna', 'C09p01050' => 'bna', 'C09p72600' => 'bna', 'CAN.G106.2' => 'can', 'CAN.G1482.1' => 'can', 'CAN.G324.12' => 'can', 'CAN.G388.20' => 'can', 'CAN.G412.7' => 'can', 'CAN.G694.32' => 'can', 'CAN.G92.12' => 'can', 'CANSAT11G2353' => 'cansat', 'CANSAT21G1398' => 'cansat', 'CANSAT56G2456' => 'cansat', 'CANSAT56G3031' => 'cansat', 'CANSAT56G4539' => 'cansat', 'CARHR083680' => 'chi', 'CARHR171190' => 'chi', 'CARHR209010' => 'chi', 'CARHR229680' => 'chi', 'CARHR249490' => 'chi', 'Carub.0003s0844' => 'cru', 'Carub.0005s2755' => 'cru', 'Carub.0006s0322' => 'cru', 'Carub.0006s3586' => 'cru', 'Carub.0007s1855' => 'cru', 'Ca_07808_v3' => 'car', 'Ca_09535_v3' => 'car', 'Ca_10548_v3' => 'car', 'Ca_19913_v3' => 'car', 'Ca_19916_v3' => 'car', 'Ca_19975_v3' => 'car', 'CBR_g22876' => 'cbr', 'CBR_g22879' => 'cbr', 'CBR_g38491' => 'cbr', 'CBR_g54185' => 'cbr', 'CBR_g54190' => 'cbr', 'Cc02_g11020' => 'ccan', 'Cc02_g23920' => 'ccan', 'Cc02_g39860' => 'ccan', 'Cc02_g39870' => 'ccan', 'Cc03_g06760' => 'ccan', 'Cc06_g02450' => 'ccan', 'Cc09_g09450' => 'ccan', 'CDE02G1959' => 'cde', 'CDE04G0600' => 'cde', 'CDE07G1996' => 'cde', 'CDE07G2078' => 'cde', 'CDE11G0611' => 'cde', 'Cfa001683' => 'cfa', 'Cfa001734' => 'cfa', 'Cfa001737' => 'cfa', 'Cfa003751' => 'cfa', 'Cfa012019' => 'cfa', 'Cfa017353' => 'cfa', 'Cfa017732' => 'cfa', 'Cfa022464' => 'cfa', 'Ciclev10012400m.g' => 'ccl', 'Ciclev10021242m.g' => 'ccl', 'Ciclev10021302m.g' => 'ccl', 'Ciclev10021463m.g' => 'ccl', 'Ciclev10032359m.g' => 'ccl', 'CiPaw.01G081000' => 'cil', 'CiPaw.01G262500' => 'cil', 'CiPaw.01G269800' => 'cil', 'CiPaw.02G168400' => 'cil', 'CiPaw.05G119500' => 'cil', 'CiPaw.11G147300' => 'cil', 'ClCG01G003630' => 'cla', 'ClCG05G000510' => 'cla', 'ClCG05G002300' => 'cla', 'ClCG08G007650' => 'cla', 'ClCG10G021250' => 'cla', 'COL.COLO4_06218' => 'col', 'COL.COLO4_12538' => 'col', 'COL.COLO4_14775' => 'col', 'COL.COLO4_23875' => 'col', 'Cpa.g.sc141.16' => 'cpa', 'Cpa.g.sc169.16' => 'cpa', 'Cpa.g.sc244.4' => 'cpa', 'Cpa.g.sc244.5' => 'cpa', 'Cpa.g.sc29.87' => 'cpa', 'Cpa.g.sc53.115' => 'cpa', 'Cre03.g207502' => 'cre', 'Cre06.g277000' => 'cre', 'Cre09.g394050' => 'cre', 'CsaV3_3G007680' => 'csa', 'CsaV3_3G009710' => 'csa', 'CsaV3_3G034790' => 'csa', 'CsaV3_5G003750' => 'csa', 'CsaV3_6G036620' => 'csa', 'CSS0002288' => 'camsi', 'CSS0011250' => 'camsi', 'CSS0021619' => 'camsi', 'CSS0046701' => 'camsi', 'DCAR_006420' => 'dca', 'DCAR_006865' => 'dca', 'DCAR_008558' => 'dca', 'DCAR_028754' => 'dca', 'DCAR_028755' => 'dca', 'Dinv31218' => 'din', 'Dinv32371' => 'din', 'Dinv34250' => 'din', 'Dinv37156' => 'din', 'Dinv43704' => 'din', 'Duzib093G1811' => 'dzi', 'Duzib106G1622' => 'dzi', 'Duzib114G0504' => 'dzi', 'Duzib128G0338' => 'dzi', 'Duzib128G1577' => 'dzi', 'Duzib133G0104' => 'dzi', 'Duzib133G1080' => 'dzi', 'Duzib138G0324' => 'dzi', 'Duzib138G0394' => 'dzi', 'Duzib205G0122' => 'dzi', 'Duzib268G1020' => 'dzi', 'Duzib268G1359' => 'dzi', 'ECA232G3929' => 'eca', 'ECA236G2210' => 'eca', 'ECA236G2287' => 'eca', 'ECA240G4568' => 'eca', 'ECA247G0894' => 'eca', 'EL10Ac1g00200' => 'bvu', 'EL10Ac1g00886' => 'bvu', 'EL10As1g23091' => 'bvu', 'EL10As1g23092' => 'bvu', 'Eucgr.A01284' => 'egr', 'Eucgr.A01285' => 'egr', 'Eucgr.D02456' => 'egr', 'Eucgr.E00018' => 'egr', 'Eucgr.E01439' => 'egr', 'Eucgr.G02859' => 'egr', 'FAN01G0168' => 'fan', 'FAN01G0453' => 'fan', 'FAN01G2761' => 'fan', 'FAN02G1239' => 'fan', 'FAN03G0645' => 'fan', 'FAN03G2707' => 'fan', 'FAN03G2978' => 'fan', 'FAN04G0227' => 'fan', 'FAN06G0091' => 'fan', 'FAN06G1418' => 'fan', 'FAN06G1512' => 'fan', 'FAN06G1986' => 'fan', 'FAN06G2905' => 'fan', 'FAN06G4325' => 'fan', 'FAN08G0033' => 'fan', 'FAN09G0642' => 'fan', 'FAN10G1763' => 'fan', 'FAN10G2026' => 'fan', 'FAN10G2513' => 'fan', 'FAN10G3402' => 'fan', 'FAN10G3564' => 'fan', 'FAN10G3987' => 'fan', 'FAN13G1490' => 'fan', 'FAN14G5857' => 'fan', 'FAN18G1188' => 'fan', 'FvH4_5g00750' => 'fve', 'FvH4_6g13410' => 'fve', 'FvH4_7g11740' => 'fve', 'FvH4_7g17410' => 'fve', 'FvH4_7g18860' => 'fve', 'Glyma.01G099100' => 'gma', 'Glyma.01G142300' => 'gma', 'Glyma.03G025500' => 'gma', 'Glyma.03G069700' => 'gma', 'Glyma.03G260000' => 'gma', 'Glyma.09G269800' => 'gma', 'Glyma.10G208700' => 'gma', 'Glyma.18G220400' => 'gma', 'Glyma.20G182000' => 'gma', 'Gohir.A01G221726' => 'ghi', 'Gohir.A07G134600' => 'ghi', 'Gohir.A07G146000' => 'ghi', 'Gohir.A08G173900' => 'ghi', 'Gohir.A09G194900' => 'ghi', 'Gohir.A10G204100' => 'ghi', 'Gohir.A11G080600' => 'ghi', 'Gohir.A11G327500' => 'ghi', 'Gohir.A12G101800' => 'ghi', 'Gohir.D01G211200' => 'ghi', 'Gohir.D07G139200' => 'ghi', 'Gohir.D07G152100' => 'ghi', 'Gohir.D08G192600' => 'ghi', 'Gohir.D09G189200' => 'ghi', 'Gohir.D10G212000' => 'ghi', 'Gohir.D11G085200' => 'ghi', 'Gohir.D11G346400' => 'ghi', 'Gohir.D12G104800' => 'ghi', 'Gorai.001G151300' => 'gra', 'Gorai.001G174100' => 'gra', 'Gorai.002G257000' => 'gra', 'Gorai.004G202600' => 'gra', 'Gorai.007G090900' => 'gra', 'Gorai.007G376700' => 'gra', 'Gorai.008G114100' => 'gra', 'Gorai.011G237900' => 'gra', 'GSVIVG01005450001' => 'vvi', 'GSVIVG01016232001' => 'vvi', 'GSVIVG01026157001' => 'vvi', 'GSVIVG01027419001' => 'vvi', 'GSVIVG01027631001' => 'vvi', 'GSVIVG01034143001' => 'vvi', 'HanXRQChr03g0093921' => 'han', 'HanXRQChr04g0120001' => 'han', 'HanXRQChr04g0122561' => 'han', 'HanXRQChr09g0246851' => 'han', 'HanXRQChr10g0293311' => 'han', 'HanXRQChr13g0425231' => 'han', 'HanXRQChr16g0532571' => 'han', 'Haze_09050' => 'cav', 'Haze_15715' => 'cav', 'Haze_15716' => 'cav', 'Haze_16803' => 'cav', 'Haze_16850' => 'cav', 'Hma1.2p1_0301F.1_g118655' => 'hma', 'Hma1.2p1_0309F.1_g120590' => 'hma', 'Hma1.2p1_0936F.1_g238900' => 'hma', 'Hma1.2p1_3552F.1_g336740' => 'hma', 'HPP92_003520' => 'vpl', 'HPP92_006628' => 'vpl', 'HPP92_006645' => 'vpl', 'HPP92_014669' => 'vpl', 'HPP92_015077' => 'vpl', 'Hund16742' => 'sun', 'Hund17022' => 'sun', 'Lalb_Chr02g0152131' => 'lal', 'Lalb_Chr05g0225371' => 'lal', 'Lalb_Chr07g0189841' => 'lal', 'Lalb_Chr07g0192961' => 'lal', 'Lalb_Chr12g0208221' => 'lal', 'Lalb_Chr13g0291211' => 'lal', 'Lalb_Chr13g0291781' => 'lal', 'Lalb_Chr18g0044651' => 'lal', 'Lalb_Chr21g0313731' => 'lal', 'Lj1g0022533' => 'lja', 'Lj2A18T50' => 'lonja', 'Lj2A92G93' => 'lonja', 'Lj3A965T73' => 'lonja', 'Lj3g0000673' => 'lja', 'Lj3g0002666' => 'lja', 'Lj4g0016985' => 'lja', 'Lj5g0003625' => 'lja', 'Lj7A529G36' => 'lonja', 'Lj9A569T49' => 'lonja', 'Lj9A604T63' => 'lonja', 'Lsat_1_v5_gn_3_132060' => 'lsa', 'Lsat_1_v5_gn_4_68941' => 'lsa', 'Lsat_1_v5_gn_5_95580' => 'lsa', 'Lsat_1_v5_gn_7_161' => 'lsa', 'Lsat_1_v5_gn_7_7041' => 'lsa', 'Lsat_1_v5_gn_9_33481' => 'lsa', 'Lsat_1_v5_gn_9_68260' => 'lsa', 'Manes.01G073100' => 'mes', 'Manes.01G266300' => 'mes', 'Manes.02G033300' => 'mes', 'Manes.05G017900' => 'mes', 'Manes.05G046100' => 'mes', 'Manes.08G080900' => 'mes', 'Manes.10G049400' => 'mes', 'Mapoly0009s0186' => 'mpo', 'Mapoly0036s0118' => 'mpo', 'Mapoly0101s0046' => 'mpo', 'MBI04_g30218_MAGBIO' => 'mbi', 'MBI04_g35564_MAGBIO' => 'mbi', 'MBI12_g34011_MAGBIO' => 'mbi', 'MBI14_g04655_MAGBIO' => 'mbi', 'MCO07G653' => 'mco', 'MCO10G173' => 'mco', 'MD01G1087100' => 'mdo', 'MD01G1104200' => 'mdo', 'MD02G1205100' => 'mdo', 'MD04G1079200' => 'mdo', 'MD04G1131400' => 'mdo', 'MD07G1121600' => 'mdo', 'MD07G1157300' => 'mdo', 'MD07G1171000' => 'mdo', 'MD12G1144500' => 'mdo', 'Medtr1g094610' => 'mtr', 'Medtr4g021795' => 'mtr', 'Medtr4g023760' => 'mtr', 'Medtr7g118050' => 'mtr', 'MELO3C005582.2' => 'cme', 'MELO3C005989.2' => 'cme', 'MELO3C006192.2' => 'cme', 'MELO3C009248.2' => 'cme', 'MELO3C019817.2' => 'cme', 'Migut.B01625' => 'egut', 'Migut.B01915' => 'egut', 'Migut.F01721' => 'egut', 'Migut.J00314' => 'egut', 'MSTRG.20742' => 'ama', 'MSTRG.8134' => 'ama', 'Nitab4.5_0000096g0010' => 'nta', 'Nitab4.5_0000202g0030' => 'nta', 'Nitab4.5_0000216g0370' => 'nta', 'Nitab4.5_0000457g0230' => 'nta', 'Nitab4.5_0001702g0170' => 'nta', 'Nitab4.5_0003607g0010' => 'nta', 'Nitab4.5_0004917g0020' => 'nta', 'Nitab4.5_0007059g0010' => 'nta', 'Nitab4.5_0007184g0010' => 'nta', 'Nitab4.5_0007346g0020' => 'nta', 'Nn1g00410' => 'nnu', 'Nn1g01252' => 'nnu', 'Nn2g11168' => 'nnu', 'Nn2g13403' => 'nnu', 'Nn2g13760' => 'nnu', 'Nn4g26380' => 'nnu', 'Oeu000806.2' => 'oeu', 'Oeu005788.1' => 'oeu', 'Oeu006900.3' => 'oeu', 'Oeu007797.1' => 'oeu', 'Oeu011932.1' => 'oeu', 'Oeu022739.1' => 'oeu', 'Oeu037918.1' => 'oeu', 'Oeu055490.2' => 'oeu', 'Os01g0844400' => 'osa', 'Os02g0819100' => 'osa', 'Os03g0804300' => 'osa', 'Os05g0458000' => 'osa', 'Os07g0467800' => 'osa', 'Os12g0602200' => 'osa', 'Peaxi162Scf00013g03444' => 'pax', 'Peaxi162Scf00094g01120' => 'pax', 'Peaxi162Scf00191g01211' => 'pax', 'Peaxi162Scf00238g01110' => 'pax', 'Peaxi162Scf00330g00719' => 'pax', 'Peaxi162Scf00627g00018' => 'pax', 'PGR031G2686' => 'pgr', 'PGR042G0809' => 'pgr', 'PGR142G0193' => 'pgr', 'PGSC0003DMG400011066' => 'stu', 'PGSC0003DMG400012041' => 'stu', 'PGSC0003DMG400013678' => 'stu', 'PGSC0003DMG400023477' => 'stu', 'PGSC0003DMG400025956' => 'stu', 'PGSC0003DMG401019151' => 'stu', 'Phvul.006G116400' => 'pvu', 'Phvul.007G097300' => 'pvu', 'Phvul.010G015000' => 'pvu', 'Phvul.010G083900' => 'pvu', 'Potri.001G117100' => 'ptr', 'Potri.002G147300' => 'ptr', 'Potri.003G115600' => 'ptr', 'Potri.006G087400' => 'ptr', 'Potri.010G226100' => 'ptr', 'Potri.014G069200' => 'ptr', 'Potri.014G104000' => 'ptr', 'Potri.016G100200' => 'ptr', 'Pp3c10_20450' => 'ppa', 'Pp3c1_42400' => 'ppa', 'Pp3c3_24390' => 'ppa', 'Pp3c3_2860' => 'ppa', 'PRCOL_00003193' => 'pco', 'Prupe.2G144500' => 'ppe', 'Prupe.2G195700' => 'ppe', 'Prupe.2G209800' => 'ppe', 'Prupe.5G080000' => 'ppe', 'Prupe.6G257900' => 'ppe', 'Psat3g001160' => 'psa', 'Psat6g181880' => 'psa', 'Psat7g233720' => 'psa', 'PSO063G7587' => 'pso', 'PSO339G2145' => 'pso', 'PSO339G3369' => 'pso', 'PSO478G2747' => 'pso', 'PSO513G0140' => 'pso', 'PSO782G1614' => 'pso', 'PSO782G4889' => 'pso', 'PSO782G5485' => 'pso', 'PSO801G0241' => 'pso', 'QL07p048854' => 'qlo', 'QL08p046745' => 'qlo', 'QL08p052606' => 'qlo', 'QL08p053414' => 'qlo', 'QL08p054868' => 'qlo', 'RcHm_v2.0_Chr1g0350251' => 'rch', 'RcHm_v2.0_Chr1g0360851' => 'rch', 'RcHm_v2.0_Chr1g0362791' => 'rch', 'RcHm_v2.0_Chr3g0466281' => 'rch', 'RcHm_v2.0_Chr7g0201481' => 'rch', 'Rhsim01G0148600' => 'rsi', 'Rhsim05G0194400' => 'rsi', 'Rhsim07G0000700' => 'rsi', 'Rhsim07G0000800' => 'rsi', 'Rhsim07G0027900' => 'rsi', 'Rhsim09G0149500' => 'rsi', 'RhsimUnG0186900' => 'rsi', 'Sabra01G0089900' => 'sbr', 'Sabra02G0114700' => 'sbr', 'Sabra02G0116300' => 'sbr', 'Sabra03G0080100' => 'sbr', 'Sabra08G0024300' => 'sbr', 'Sabra10G0174300' => 'sbr', 'Sabra14G0048900' => 'sbr', 'Sabra14G0076500' => 'sbr', 'SalBow5G2513' => 'sbo', 'Sc01g0002300' => 'sci', 'Sc01g0004450' => 'sci', 'Sc06g0001680' => 'sci', 'Sc23g0003580' => 'sci', 'Sed0000913' => 'sed', 'Sed0001655' => 'sed', 'Sed0007745' => 'sed', 'Sed0010951' => 'sed', 'Sed0017599' => 'sed', 'Sed0021405' => 'sed', 'Sed0022810' => 'sed', 'SEGI_07099' => 'sgi', 'SEGI_11931' => 'sgi', 'SEGI_13187' => 'sgi', 'SEGI_29958' => 'sgi', 'SEGI_36351' => 'sgi', 'SGA_v2.0_scaffold126G33770' => 'sas', 'SGA_v2.0_scaffold153G37003' => 'sas', 'SGA_v2.0_scaffold2G01359' => 'sas', 'SGA_v2.0_scaffold5G03064' => 'sas', 'SGA_v2.0_scaffold95G28903' => 'sas', 'SHI12701' => 'shi', 'SHI26410' => 'shi', 'SHI38997' => 'shi', 'SHI53759' => 'shi', 'SHI53886' => 'shi', 'SHI54714' => 'shi', 'SMO011G0041' => 'smo', 'SMO146G0251' => 'smo', 'SMO160G0004' => 'smo', 'SMO174G0057' => 'smo', 'SMO244G0089' => 'smo', 'SMO296G0011' => 'smo', 'Solyc01g091280.3' => 'sly', 'Solyc05g047610.3' => 'sly', 'Solyc05g047640.3' => 'sly', 'Solyc05g055630.3' => 'sly', 'Solyc10g018160.2' => 'sly', 'Solyc10g084820.2' => 'sly', 'Solyc10g086565.2' => 'sly', 'Sopen01g037030' => 'spe', 'Sopen05g027920' => 'spe', 'Sopen05g034070' => 'spe', 'Sopen10g007260' => 'spe', 'Sopen10g034260' => 'spe', 'Sopen10g035950' => 'spe', 'Sp3g07710' => 'spa', 'Sp4g27420' => 'spa', 'Sp5g02450' => 'spa', 'Sp6g01280' => 'spa', 'Sp6g38480' => 'spa', 'Sp7g20780' => 'spa', 'TAR374G1413' => 'tar', 'TAR623G1777' => 'tar', 'TAR629G2370' => 'tar', 'TAR633G1759' => 'tar', 'TAR636G3387' => 'tar', 'THA.LOC104802447' => 'tha', 'THA.LOC104813916' => 'tha', 'THA.LOC104816423' => 'tha', 'THA.LOC104817246' => 'tha', 'THA.LOC104825895' => 'tha', 'Thecc.01G335200' => 'tca', 'Thecc.01G377400' => 'tca', 'Thecc.03G262200' => 'tca', 'Thecc.05G036800' => 'tca', 'Thecc.10G080500' => 'tca', 'Thecc.10G080800' => 'tca', 'Thhalv10001560m.g' => 'esa', 'Thhalv10006120m.g' => 'esa', 'Thhalv10014375m.g' => 'esa', 'Thhalv10021264m.g' => 'esa', 'Thhalv10028856m.g' => 'esa', 'TPR.G1914' => 'tpr', 'TPR.G4757' => 'tpr', 'TPR.G5595' => 'tpr', 'TWI14G0952' => 'twi', 'TWI14G1307' => 'twi', 'TWI38G2143' => 'twi', 'TWI59G0826' => 'twi', 'TWI77G0527' => 'twi', 'TWI81G0150' => 'twi', 'unitig_21.g21018' => 'ugi', 'unitig_26.g9725' => 'ugi', 'unitig_744.g24653' => 'ugi', 'unitig_749.g13778' => 'ugi', 'unitig_899.g15035' => 'ugi', 'vmacro04296' => 'vma', 'vmacro04852' => 'vma', 'vmacro13404' => 'vma', 'vmacro20169' => 'vma', 'vmacro21014' => 'vma', 'VMungo0331G0237' => 'vmu', 'VMungo0331G0706' => 'vmu', 'VMungo0331G1361' => 'vmu', 'VMungo0331G1489' => 'vmu', 'VMungo0540G1037' => 'vmu', 'VMungo0720G2487' => 'vmu', 'VMungo0720G2721' => 'vmu', 'Zm00001eb086860' => 'zma', 'Zm00001eb104760' => 'zma', 'Zm00001eb148220' => 'zma', 'Zm00001eb259030' => 'zma', 'Zm00001eb289590' => 'zma', 'Zm00001eb420150' => 'zma' ), 'gf_id' => 'HOM05D000968', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000968' ), 'data_identifier' => 'HOM05D000968', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000968', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p31690' => 'bna', 'A03p36040' => 'bna', 'A03p53730' => 'bna', 'A04p01410' => 'bna', 'A05p05420' => 'bna', 'A05p39630' => 'bna', 'A05p39640' => 'bna', 'A09p00970' => 'bna', 'A09p53060' => 'bna', 'A10p31890' => 'bna', 'Aa31LG10G15040' => 'aar', 'Aa31LG1G21090' => 'aar', 'Aa31LG1G26900' => 'aar', 'Aa31LG3G1820' => 'aar', 'Aa31LG5G1100' => 'aar', 'Aa31LG6G4740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2265' => 'aag', 'Actinidia07998' => 'ach', 'Actinidia11266' => 'ach', 'Actinidia12682' => 'ach', 'Actinidia26479' => 'ach', 'Actinidia31406' => 'ach', 'Actinidia32437' => 'ach', 'Actinidia38862' => 'ach', 'Ah.05g174230' => 'amhyb', 'Ah.05g179070' => 'amhyb', 'Ah.05g179090' => 'amhyb', 'Ah.12g059950' => 'amhyb', 'AL3G20480' => 'aly', 'AL4G44520' => 'aly', 'AL5G43110' => 'aly', 'AL6G13890' => 'aly', 'AL6G52620' => 'aly', 'AL7G30830' => 'aly', 'Aqoxy1G00899' => 'aox', 'Aqoxy5G04333' => 'aox', 'Aqoxy7G00641' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3IZ0NN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4EF6AW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W9P8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79GA3M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C43NQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFCU6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G95YVJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCHK29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LU1UG8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX91RN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGB4B1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8DA0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9H7JI' => 'arhy', 'AT3G09320' => 'ath', 'AT3G60800' => 'ath', 'AT4G00840' => 'ath', 'AT4G22750' => 'ath', 'AT5G04270' => 'ath', 'ATR0090G003' => 'atr', 'ATR0559G349' => 'atr', 'ATR0680G261' => 'atr', 'ATR0810G048' => 'atr', 'Atru.chr12.831' => 'acertr', 'Atru.chr5.303' => 'acertr', 'Atru.chr5.748' => 'acertr', 'Atru.chr8.1999' => 'acertr', 'Atru.chr9.1436' => 'acertr', 'AUR62004211' => 'cqu', 'AUR62004548' => 'cqu', 'AUR62013637' => 'cqu', 'AUR62022662' => 'cqu', 'AUR62025777' => 'cqu', 'AUR62042386' => 'cqu', 'BcaB01g02310' => 'bca', 'BcaB01g06062' => 'bca', 'BcaB02g08975' => 'bca', 'BcaB02g08980' => 'bca', 'BcaC01g04228' => 'bca', 'BcaC01g06830' => 'bca', 'BcaC02g10186' => 'bca', 'BcaC02g12214' => 'bca', 'BcaC04g24101' => 'bca', 'BcaC05g29520' => 'bca', 'BcaC05g29661' => 'bca', 'BcaC06g32130' => 'bca', 'BcaC06g32131' => 'bca', 'BcaC07g40601' => 'bca', 'BcaC07g42641' => 'bca', 'BcaNung01038' => 'bca', 'BcaNung01676' => 'bca', 'BcaNung02480' => 'bca', 'BcaNung07376' => 'bca', 'BolC3t16146H' => 'bol', 'BolC3t16637H' => 'bol', 'BolC4t22257H' => 'bol', 'BolC4t24728H' => 'bol', 'BolC5t34517H' => 'bol', 'BolC7t45703H' => 'bol', 'BolC8t51166H' => 'bol', 'BolC9t53038H' => 'bol', 'BolC9t60000H' => 'bol', 'BraA01t01345Z' => 'bra', 'BraA01t01346Z' => 'bra', 'BraA01t01348Z' => 'bra', 'BraA03t12347Z' => 'bra', 'BraA03t12775Z' => 'bra', 'BraA03t14439Z' => 'bra', 'BraA04t15860Z' => 'bra', 'BraA05t19511Z' => 'bra', 'BraA05t22746Z' => 'bra', 'BraA09t35767Z' => 'bra', 'BraA09t40732Z' => 'bra', 'BraA10t45233Z' => 'bra', 'C03p38720' => 'bna', 'C03p43680' => 'bna', 'C04p06350' => 'bna', 'C04p31800' => 'bna', 'C05p58680' => 'bna', 'C07p52110' => 'bna', 'C08p35760' => 'bna', 'C09p01050' => 'bna', 'C09p72600' => 'bna', 'CAN.G106.2' => 'can', 'CAN.G1482.1' => 'can', 'CAN.G324.12' => 'can', 'CAN.G388.20' => 'can', 'CAN.G412.7' => 'can', 'CAN.G694.32' => 'can', 'CAN.G92.12' => 'can', 'CANSAT11G2353' => 'cansat', 'CANSAT21G1398' => 'cansat', 'CANSAT56G2456' => 'cansat', 'CANSAT56G3031' => 'cansat', 'CANSAT56G4539' => 'cansat', 'CARHR083680' => 'chi', 'CARHR171190' => 'chi', 'CARHR209010' => 'chi', 'CARHR229680' => 'chi', 'CARHR249490' => 'chi', 'Carub.0003s0844' => 'cru', 'Carub.0005s2755' => 'cru', 'Carub.0006s0322' => 'cru', 'Carub.0006s3586' => 'cru', 'Carub.0007s1855' => 'cru', 'Ca_07808_v3' => 'car', 'Ca_09535_v3' => 'car', 'Ca_10548_v3' => 'car', 'Ca_19913_v3' => 'car', 'Ca_19916_v3' => 'car', 'Ca_19975_v3' => 'car', 'CBR_g22876' => 'cbr', 'CBR_g22879' => 'cbr', 'CBR_g38491' => 'cbr', 'CBR_g54185' => 'cbr', 'CBR_g54190' => 'cbr', 'Cc02_g11020' => 'ccan', 'Cc02_g23920' => 'ccan', 'Cc02_g39860' => 'ccan', 'Cc02_g39870' => 'ccan', 'Cc03_g06760' => 'ccan', 'Cc06_g02450' => 'ccan', 'Cc09_g09450' => 'ccan', 'CDE02G1959' => 'cde', 'CDE04G0600' => 'cde', 'CDE07G1996' => 'cde', 'CDE07G2078' => 'cde', 'CDE11G0611' => 'cde', 'Cfa001683' => 'cfa', 'Cfa001734' => 'cfa', 'Cfa001737' => 'cfa', 'Cfa003751' => 'cfa', 'Cfa012019' => 'cfa', 'Cfa017353' => 'cfa', 'Cfa017732' => 'cfa', 'Cfa022464' => 'cfa', 'Ciclev10012400m.g' => 'ccl', 'Ciclev10021242m.g' => 'ccl', 'Ciclev10021302m.g' => 'ccl', 'Ciclev10021463m.g' => 'ccl', 'Ciclev10032359m.g' => 'ccl', 'CiPaw.01G081000' => 'cil', 'CiPaw.01G262500' => 'cil', 'CiPaw.01G269800' => 'cil', 'CiPaw.02G168400' => 'cil', 'CiPaw.05G119500' => 'cil', 'CiPaw.11G147300' => 'cil', 'ClCG01G003630' => 'cla', 'ClCG05G000510' => 'cla', 'ClCG05G002300' => 'cla', 'ClCG08G007650' => 'cla', 'ClCG10G021250' => 'cla', 'COL.COLO4_06218' => 'col', 'COL.COLO4_12538' => 'col', 'COL.COLO4_14775' => 'col', 'COL.COLO4_23875' => 'col', 'Cpa.g.sc141.16' => 'cpa', 'Cpa.g.sc169.16' => 'cpa', 'Cpa.g.sc244.4' => 'cpa', 'Cpa.g.sc244.5' => 'cpa', 'Cpa.g.sc29.87' => 'cpa', 'Cpa.g.sc53.115' => 'cpa', 'Cre03.g207502' => 'cre', 'Cre06.g277000' => 'cre', 'Cre09.g394050' => 'cre', 'CsaV3_3G007680' => 'csa', 'CsaV3_3G009710' => 'csa', 'CsaV3_3G034790' => 'csa', 'CsaV3_5G003750' => 'csa', 'CsaV3_6G036620' => 'csa', 'CSS0002288' => 'camsi', 'CSS0011250' => 'camsi', 'CSS0021619' => 'camsi', 'CSS0046701' => 'camsi', 'DCAR_006420' => 'dca', 'DCAR_006865' => 'dca', 'DCAR_008558' => 'dca', 'DCAR_028754' => 'dca', 'DCAR_028755' => 'dca', 'Dinv31218' => 'din', 'Dinv32371' => 'din', 'Dinv34250' => 'din', 'Dinv37156' => 'din', 'Dinv43704' => 'din', 'Duzib093G1811' => 'dzi', 'Duzib106G1622' => 'dzi', 'Duzib114G0504' => 'dzi', 'Duzib128G0338' => 'dzi', 'Duzib128G1577' => 'dzi', 'Duzib133G0104' => 'dzi', 'Duzib133G1080' => 'dzi', 'Duzib138G0324' => 'dzi', 'Duzib138G0394' => 'dzi', 'Duzib205G0122' => 'dzi', 'Duzib268G1020' => 'dzi', 'Duzib268G1359' => 'dzi', 'ECA232G3929' => 'eca', 'ECA236G2210' => 'eca', 'ECA236G2287' => 'eca', 'ECA240G4568' => 'eca', 'ECA247G0894' => 'eca', 'EL10Ac1g00200' => 'bvu', 'EL10Ac1g00886' => 'bvu', 'EL10As1g23091' => 'bvu', 'EL10As1g23092' => 'bvu', 'Eucgr.A01284' => 'egr', 'Eucgr.A01285' => 'egr', 'Eucgr.D02456' => 'egr', 'Eucgr.E00018' => 'egr', 'Eucgr.E01439' => 'egr', 'Eucgr.G02859' => 'egr', 'FAN01G0168' => 'fan', 'FAN01G0453' => 'fan', 'FAN01G2761' => 'fan', 'FAN02G1239' => 'fan', 'FAN03G0645' => 'fan', 'FAN03G2707' => 'fan', 'FAN03G2978' => 'fan', 'FAN04G0227' => 'fan', 'FAN06G0091' => 'fan', 'FAN06G1418' => 'fan', 'FAN06G1512' => 'fan', 'FAN06G1986' => 'fan', 'FAN06G2905' => 'fan', 'FAN06G4325' => 'fan', 'FAN08G0033' => 'fan', 'FAN09G0642' => 'fan', 'FAN10G1763' => 'fan', 'FAN10G2026' => 'fan', 'FAN10G2513' => 'fan', 'FAN10G3402' => 'fan', 'FAN10G3564' => 'fan', 'FAN10G3987' => 'fan', 'FAN13G1490' => 'fan', 'FAN14G5857' => 'fan', 'FAN18G1188' => 'fan', 'FvH4_5g00750' => 'fve', 'FvH4_6g13410' => 'fve', 'FvH4_7g11740' => 'fve', 'FvH4_7g17410' => 'fve', 'FvH4_7g18860' => 'fve', 'Glyma.01G099100' => 'gma', 'Glyma.01G142300' => 'gma', 'Glyma.03G025500' => 'gma', 'Glyma.03G069700' => 'gma', 'Glyma.03G260000' => 'gma', 'Glyma.09G269800' => 'gma', 'Glyma.10G208700' => 'gma', 'Glyma.18G220400' => 'gma', 'Glyma.20G182000' => 'gma', 'Gohir.A01G221726' => 'ghi', 'Gohir.A07G134600' => 'ghi', 'Gohir.A07G146000' => 'ghi', 'Gohir.A08G173900' => 'ghi', 'Gohir.A09G194900' => 'ghi', 'Gohir.A10G204100' => 'ghi', 'Gohir.A11G080600' => 'ghi', 'Gohir.A11G327500' => 'ghi', 'Gohir.A12G101800' => 'ghi', 'Gohir.D01G211200' => 'ghi', 'Gohir.D07G139200' => 'ghi', 'Gohir.D07G152100' => 'ghi', 'Gohir.D08G192600' => 'ghi', 'Gohir.D09G189200' => 'ghi', 'Gohir.D10G212000' => 'ghi', 'Gohir.D11G085200' => 'ghi', 'Gohir.D11G346400' => 'ghi', 'Gohir.D12G104800' => 'ghi', 'Gorai.001G151300' => 'gra', 'Gorai.001G174100' => 'gra', 'Gorai.002G257000' => 'gra', 'Gorai.004G202600' => 'gra', 'Gorai.007G090900' => 'gra', 'Gorai.007G376700' => 'gra', 'Gorai.008G114100' => 'gra', 'Gorai.011G237900' => 'gra', 'GSVIVG01005450001' => 'vvi', 'GSVIVG01016232001' => 'vvi', 'GSVIVG01026157001' => 'vvi', 'GSVIVG01027419001' => 'vvi', 'GSVIVG01027631001' => 'vvi', 'GSVIVG01034143001' => 'vvi', 'HanXRQChr03g0093921' => 'han', 'HanXRQChr04g0120001' => 'han', 'HanXRQChr04g0122561' => 'han', 'HanXRQChr09g0246851' => 'han', 'HanXRQChr10g0293311' => 'han', 'HanXRQChr13g0425231' => 'han', 'HanXRQChr16g0532571' => 'han', 'Haze_09050' => 'cav', 'Haze_15715' => 'cav', 'Haze_15716' => 'cav', 'Haze_16803' => 'cav', 'Haze_16850' => 'cav', 'Hma1.2p1_0301F.1_g118655' => 'hma', 'Hma1.2p1_0309F.1_g120590' => 'hma', 'Hma1.2p1_0936F.1_g238900' => 'hma', 'Hma1.2p1_3552F.1_g336740' => 'hma', 'HPP92_003520' => 'vpl', 'HPP92_006628' => 'vpl', 'HPP92_006645' => 'vpl', 'HPP92_014669' => 'vpl', 'HPP92_015077' => 'vpl', 'Hund16742' => 'sun', 'Hund17022' => 'sun', 'Lalb_Chr02g0152131' => 'lal', 'Lalb_Chr05g0225371' => 'lal', 'Lalb_Chr07g0189841' => 'lal', 'Lalb_Chr07g0192961' => 'lal', 'Lalb_Chr12g0208221' => 'lal', 'Lalb_Chr13g0291211' => 'lal', 'Lalb_Chr13g0291781' => 'lal', 'Lalb_Chr18g0044651' => 'lal', 'Lalb_Chr21g0313731' => 'lal', 'Lj1g0022533' => 'lja', 'Lj2A18T50' => 'lonja', 'Lj2A92G93' => 'lonja', 'Lj3A965T73' => 'lonja', 'Lj3g0000673' => 'lja', 'Lj3g0002666' => 'lja', 'Lj4g0016985' => 'lja', 'Lj5g0003625' => 'lja', 'Lj7A529G36' => 'lonja', 'Lj9A569T49' => 'lonja', 'Lj9A604T63' => 'lonja', 'Lsat_1_v5_gn_3_132060' => 'lsa', 'Lsat_1_v5_gn_4_68941' => 'lsa', 'Lsat_1_v5_gn_5_95580' => 'lsa', 'Lsat_1_v5_gn_7_161' => 'lsa', 'Lsat_1_v5_gn_7_7041' => 'lsa', 'Lsat_1_v5_gn_9_33481' => 'lsa', 'Lsat_1_v5_gn_9_68260' => 'lsa', 'Manes.01G073100' => 'mes', 'Manes.01G266300' => 'mes', 'Manes.02G033300' => 'mes', 'Manes.05G017900' => 'mes', 'Manes.05G046100' => 'mes', 'Manes.08G080900' => 'mes', 'Manes.10G049400' => 'mes', 'Mapoly0009s0186' => 'mpo', 'Mapoly0036s0118' => 'mpo', 'Mapoly0101s0046' => 'mpo', 'MBI04_g30218_MAGBIO' => 'mbi', 'MBI04_g35564_MAGBIO' => 'mbi', 'MBI12_g34011_MAGBIO' => 'mbi', 'MBI14_g04655_MAGBIO' => 'mbi', 'MCO07G653' => 'mco', 'MCO10G173' => 'mco', 'MD01G1087100' => 'mdo', 'MD01G1104200' => 'mdo', 'MD02G1205100' => 'mdo', 'MD04G1079200' => 'mdo', 'MD04G1131400' => 'mdo', 'MD07G1121600' => 'mdo', 'MD07G1157300' => 'mdo', 'MD07G1171000' => 'mdo', 'MD12G1144500' => 'mdo', 'Medtr1g094610' => 'mtr', 'Medtr4g021795' => 'mtr', 'Medtr4g023760' => 'mtr', 'Medtr7g118050' => 'mtr', 'MELO3C005582.2' => 'cme', 'MELO3C005989.2' => 'cme', 'MELO3C006192.2' => 'cme', 'MELO3C009248.2' => 'cme', 'MELO3C019817.2' => 'cme', 'Migut.B01625' => 'egut', 'Migut.B01915' => 'egut', 'Migut.F01721' => 'egut', 'Migut.J00314' => 'egut', 'MSTRG.20742' => 'ama', 'MSTRG.8134' => 'ama', 'Nitab4.5_0000096g0010' => 'nta', 'Nitab4.5_0000202g0030' => 'nta', 'Nitab4.5_0000216g0370' => 'nta', 'Nitab4.5_0000457g0230' => 'nta', 'Nitab4.5_0001702g0170' => 'nta', 'Nitab4.5_0003607g0010' => 'nta', 'Nitab4.5_0004917g0020' => 'nta', 'Nitab4.5_0007059g0010' => 'nta', 'Nitab4.5_0007184g0010' => 'nta', 'Nitab4.5_0007346g0020' => 'nta', 'Nn1g00410' => 'nnu', 'Nn1g01252' => 'nnu', 'Nn2g11168' => 'nnu', 'Nn2g13403' => 'nnu', 'Nn2g13760' => 'nnu', 'Nn4g26380' => 'nnu', 'Oeu000806.2' => 'oeu', 'Oeu005788.1' => 'oeu', 'Oeu006900.3' => 'oeu', 'Oeu007797.1' => 'oeu', 'Oeu011932.1' => 'oeu', 'Oeu022739.1' => 'oeu', 'Oeu037918.1' => 'oeu', 'Oeu055490.2' => 'oeu', 'Os01g0844400' => 'osa', 'Os02g0819100' => 'osa', 'Os03g0804300' => 'osa', 'Os05g0458000' => 'osa', 'Os07g0467800' => 'osa', 'Os12g0602200' => 'osa', 'Peaxi162Scf00013g03444' => 'pax', 'Peaxi162Scf00094g01120' => 'pax', 'Peaxi162Scf00191g01211' => 'pax', 'Peaxi162Scf00238g01110' => 'pax', 'Peaxi162Scf00330g00719' => 'pax', 'Peaxi162Scf00627g00018' => 'pax', 'PGR031G2686' => 'pgr', 'PGR042G0809' => 'pgr', 'PGR142G0193' => 'pgr', 'PGSC0003DMG400011066' => 'stu', 'PGSC0003DMG400012041' => 'stu', 'PGSC0003DMG400013678' => 'stu', 'PGSC0003DMG400023477' => 'stu', 'PGSC0003DMG400025956' => 'stu', 'PGSC0003DMG401019151' => 'stu', 'Phvul.006G116400' => 'pvu', 'Phvul.007G097300' => 'pvu', 'Phvul.010G015000' => 'pvu', 'Phvul.010G083900' => 'pvu', 'Potri.001G117100' => 'ptr', 'Potri.002G147300' => 'ptr', 'Potri.003G115600' => 'ptr', 'Potri.006G087400' => 'ptr', 'Potri.010G226100' => 'ptr', 'Potri.014G069200' => 'ptr', 'Potri.014G104000' => 'ptr', 'Potri.016G100200' => 'ptr', 'Pp3c10_20450' => 'ppa', 'Pp3c1_42400' => 'ppa', 'Pp3c3_24390' => 'ppa', 'Pp3c3_2860' => 'ppa', 'PRCOL_00003193' => 'pco', 'Prupe.2G144500' => 'ppe', 'Prupe.2G195700' => 'ppe', 'Prupe.2G209800' => 'ppe', 'Prupe.5G080000' => 'ppe', 'Prupe.6G257900' => 'ppe', 'Psat3g001160' => 'psa', 'Psat6g181880' => 'psa', 'Psat7g233720' => 'psa', 'PSO063G7587' => 'pso', 'PSO339G2145' => 'pso', 'PSO339G3369' => 'pso', 'PSO478G2747' => 'pso', 'PSO513G0140' => 'pso', 'PSO782G1614' => 'pso', 'PSO782G4889' => 'pso', 'PSO782G5485' => 'pso', 'PSO801G0241' => 'pso', 'QL07p048854' => 'qlo', 'QL08p046745' => 'qlo', 'QL08p052606' => 'qlo', 'QL08p053414' => 'qlo', 'QL08p054868' => 'qlo', 'RcHm_v2.0_Chr1g0350251' => 'rch', 'RcHm_v2.0_Chr1g0360851' => 'rch', 'RcHm_v2.0_Chr1g0362791' => 'rch', 'RcHm_v2.0_Chr3g0466281' => 'rch', 'RcHm_v2.0_Chr7g0201481' => 'rch', 'Rhsim01G0148600' => 'rsi', 'Rhsim05G0194400' => 'rsi', 'Rhsim07G0000700' => 'rsi', 'Rhsim07G0000800' => 'rsi', 'Rhsim07G0027900' => 'rsi', 'Rhsim09G0149500' => 'rsi', 'RhsimUnG0186900' => 'rsi', 'Sabra01G0089900' => 'sbr', 'Sabra02G0114700' => 'sbr', 'Sabra02G0116300' => 'sbr', 'Sabra03G0080100' => 'sbr', 'Sabra08G0024300' => 'sbr', 'Sabra10G0174300' => 'sbr', 'Sabra14G0048900' => 'sbr', 'Sabra14G0076500' => 'sbr', 'SalBow5G2513' => 'sbo', 'Sc01g0002300' => 'sci', 'Sc01g0004450' => 'sci', 'Sc06g0001680' => 'sci', 'Sc23g0003580' => 'sci', 'Sed0000913' => 'sed', 'Sed0001655' => 'sed', 'Sed0007745' => 'sed', 'Sed0010951' => 'sed', 'Sed0017599' => 'sed', 'Sed0021405' => 'sed', 'Sed0022810' => 'sed', 'SEGI_07099' => 'sgi', 'SEGI_11931' => 'sgi', 'SEGI_13187' => 'sgi', 'SEGI_29958' => 'sgi', 'SEGI_36351' => 'sgi', 'SGA_v2.0_scaffold126G33770' => 'sas', 'SGA_v2.0_scaffold153G37003' => 'sas', 'SGA_v2.0_scaffold2G01359' => 'sas', 'SGA_v2.0_scaffold5G03064' => 'sas', 'SGA_v2.0_scaffold95G28903' => 'sas', 'SHI12701' => 'shi', 'SHI26410' => 'shi', 'SHI38997' => 'shi', 'SHI53759' => 'shi', 'SHI53886' => 'shi', 'SHI54714' => 'shi', 'SMO011G0041' => 'smo', 'SMO146G0251' => 'smo', 'SMO160G0004' => 'smo', 'SMO174G0057' => 'smo', 'SMO244G0089' => 'smo', 'SMO296G0011' => 'smo', 'Solyc01g091280.3' => 'sly', 'Solyc05g047610.3' => 'sly', 'Solyc05g047640.3' => 'sly', 'Solyc05g055630.3' => 'sly', 'Solyc10g018160.2' => 'sly', 'Solyc10g084820.2' => 'sly', 'Solyc10g086565.2' => 'sly', 'Sopen01g037030' => 'spe', 'Sopen05g027920' => 'spe', 'Sopen05g034070' => 'spe', 'Sopen10g007260' => 'spe', 'Sopen10g034260' => 'spe', 'Sopen10g035950' => 'spe', 'Sp3g07710' => 'spa', 'Sp4g27420' => 'spa', 'Sp5g02450' => 'spa', 'Sp6g01280' => 'spa', 'Sp6g38480' => 'spa', 'Sp7g20780' => 'spa', 'TAR374G1413' => 'tar', 'TAR623G1777' => 'tar', 'TAR629G2370' => 'tar', 'TAR633G1759' => 'tar', 'TAR636G3387' => 'tar', 'THA.LOC104802447' => 'tha', 'THA.LOC104813916' => 'tha', 'THA.LOC104816423' => 'tha', 'THA.LOC104817246' => 'tha', 'THA.LOC104825895' => 'tha', 'Thecc.01G335200' => 'tca', 'Thecc.01G377400' => 'tca', 'Thecc.03G262200' => 'tca', 'Thecc.05G036800' => 'tca', 'Thecc.10G080500' => 'tca', 'Thecc.10G080800' => 'tca', 'Thhalv10001560m.g' => 'esa', 'Thhalv10006120m.g' => 'esa', 'Thhalv10014375m.g' => 'esa', 'Thhalv10021264m.g' => 'esa', 'Thhalv10028856m.g' => 'esa', 'TPR.G1914' => 'tpr', 'TPR.G4757' => 'tpr', 'TPR.G5595' => 'tpr', 'TWI14G0952' => 'twi', 'TWI14G1307' => 'twi', 'TWI38G2143' => 'twi', 'TWI59G0826' => 'twi', 'TWI77G0527' => 'twi', 'TWI81G0150' => 'twi', 'unitig_21.g21018' => 'ugi', 'unitig_26.g9725' => 'ugi', 'unitig_744.g24653' => 'ugi', 'unitig_749.g13778' => 'ugi', 'unitig_899.g15035' => 'ugi', 'vmacro04296' => 'vma', 'vmacro04852' => 'vma', 'vmacro13404' => 'vma', 'vmacro20169' => 'vma', 'vmacro21014' => 'vma', 'VMungo0331G0237' => 'vmu', 'VMungo0331G0706' => 'vmu', 'VMungo0331G1361' => 'vmu', 'VMungo0331G1489' => 'vmu', 'VMungo0540G1037' => 'vmu', 'VMungo0720G2487' => 'vmu', 'VMungo0720G2721' => 'vmu', 'Zm00001eb086860' => 'zma', 'Zm00001eb104760' => 'zma', 'Zm00001eb148220' => 'zma', 'Zm00001eb259030' => 'zma', 'Zm00001eb289590' => 'zma', 'Zm00001eb420150' => 'zma' ) $gf_id = 'HOM05D000968' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000968' ) $data_identifier = 'HOM05D000968' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 19, 'bol' => (int) 9, 'bra' => (int) 12, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 5, 'ccan' => (int) 7, 'cde' => (int) 5, 'cfa' => (int) 8, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 4, 'dca' => (int) 5, 'din' => (int) 5, 'dzi' => (int) 12, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 25, 'fve' => (int) 5, 'gma' => (int) 9, 'ghi' => (int) 18, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 7, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 5, 'sun' => (int) 2, 'lal' => (int) 9, 'lja' => (int) 5, 'lonja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 9, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 2, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 3, 'stu' => (int) 6, 'pvu' => (int) 4, 'ptr' => (int) 8, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 3, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 1, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 5, 'sas' => (int) 5, 'shi' => (int) 6, 'smo' => (int) 6, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 3, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420150' $species_info = array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ) $local_species = 'dca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000968', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p31690' => 'bna', 'A03p36040' => 'bna', 'A03p53730' => 'bna', 'A04p01410' => 'bna', 'A05p05420' => 'bna', 'A05p39630' => 'bna', 'A05p39640' => 'bna', 'A09p00970' => 'bna', 'A09p53060' => 'bna', 'A10p31890' => 'bna', 'Aa31LG10G15040' => 'aar', 'Aa31LG1G21090' => 'aar', 'Aa31LG1G26900' => 'aar', 'Aa31LG3G1820' => 'aar', 'Aa31LG5G1100' => 'aar', 'Aa31LG6G4740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2265' => 'aag', 'Actinidia07998' => 'ach', 'Actinidia11266' => 'ach', 'Actinidia12682' => 'ach', 'Actinidia26479' => 'ach', 'Actinidia31406' => 'ach', 'Actinidia32437' => 'ach', 'Actinidia38862' => 'ach', 'Ah.05g174230' => 'amhyb', 'Ah.05g179070' => 'amhyb', 'Ah.05g179090' => 'amhyb', 'Ah.12g059950' => 'amhyb', 'AL3G20480' => 'aly', 'AL4G44520' => 'aly', 'AL5G43110' => 'aly', 'AL6G13890' => 'aly', 'AL6G52620' => 'aly', 'AL7G30830' => 'aly', 'Aqoxy1G00899' => 'aox', 'Aqoxy5G04333' => 'aox', 'Aqoxy7G00641' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3IZ0NN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4EF6AW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W9P8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79GA3M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C43NQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFCU6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G95YVJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCHK29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LU1UG8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX91RN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGB4B1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8DA0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9H7JI' => 'arhy', 'AT3G09320' => 'ath', 'AT3G60800' => 'ath', 'AT4G00840' => 'ath', 'AT4G22750' => 'ath', 'AT5G04270' => 'ath', 'ATR0090G003' => 'atr', 'ATR0559G349' => 'atr', 'ATR0680G261' => 'atr', 'ATR0810G048' => 'atr', 'Atru.chr12.831' => 'acertr', 'Atru.chr5.303' => 'acertr', 'Atru.chr5.748' => 'acertr', 'Atru.chr8.1999' => 'acertr', 'Atru.chr9.1436' => 'acertr', 'AUR62004211' => 'cqu', 'AUR62004548' => 'cqu', 'AUR62013637' => 'cqu', 'AUR62022662' => 'cqu', 'AUR62025777' => 'cqu', 'AUR62042386' => 'cqu', 'BcaB01g02310' => 'bca', 'BcaB01g06062' => 'bca', 'BcaB02g08975' => 'bca', 'BcaB02g08980' => 'bca', 'BcaC01g04228' => 'bca', 'BcaC01g06830' => 'bca', 'BcaC02g10186' => 'bca', 'BcaC02g12214' => 'bca', 'BcaC04g24101' => 'bca', 'BcaC05g29520' => 'bca', 'BcaC05g29661' => 'bca', 'BcaC06g32130' => 'bca', 'BcaC06g32131' => 'bca', 'BcaC07g40601' => 'bca', 'BcaC07g42641' => 'bca', 'BcaNung01038' => 'bca', 'BcaNung01676' => 'bca', 'BcaNung02480' => 'bca', 'BcaNung07376' => 'bca', 'BolC3t16146H' => 'bol', 'BolC3t16637H' => 'bol', 'BolC4t22257H' => 'bol', 'BolC4t24728H' => 'bol', 'BolC5t34517H' => 'bol', 'BolC7t45703H' => 'bol', 'BolC8t51166H' => 'bol', 'BolC9t53038H' => 'bol', 'BolC9t60000H' => 'bol', 'BraA01t01345Z' => 'bra', 'BraA01t01346Z' => 'bra', 'BraA01t01348Z' => 'bra', 'BraA03t12347Z' => 'bra', 'BraA03t12775Z' => 'bra', 'BraA03t14439Z' => 'bra', 'BraA04t15860Z' => 'bra', 'BraA05t19511Z' => 'bra', 'BraA05t22746Z' => 'bra', 'BraA09t35767Z' => 'bra', 'BraA09t40732Z' => 'bra', 'BraA10t45233Z' => 'bra', 'C03p38720' => 'bna', 'C03p43680' => 'bna', 'C04p06350' => 'bna', 'C04p31800' => 'bna', 'C05p58680' => 'bna', 'C07p52110' => 'bna', 'C08p35760' => 'bna', 'C09p01050' => 'bna', 'C09p72600' => 'bna', 'CAN.G106.2' => 'can', 'CAN.G1482.1' => 'can', 'CAN.G324.12' => 'can', 'CAN.G388.20' => 'can', 'CAN.G412.7' => 'can', 'CAN.G694.32' => 'can', 'CAN.G92.12' => 'can', 'CANSAT11G2353' => 'cansat', 'CANSAT21G1398' => 'cansat', 'CANSAT56G2456' => 'cansat', 'CANSAT56G3031' => 'cansat', 'CANSAT56G4539' => 'cansat', 'CARHR083680' => 'chi', 'CARHR171190' => 'chi', 'CARHR209010' => 'chi', 'CARHR229680' => 'chi', 'CARHR249490' => 'chi', 'Carub.0003s0844' => 'cru', 'Carub.0005s2755' => 'cru', 'Carub.0006s0322' => 'cru', 'Carub.0006s3586' => 'cru', 'Carub.0007s1855' => 'cru', 'Ca_07808_v3' => 'car', 'Ca_09535_v3' => 'car', 'Ca_10548_v3' => 'car', 'Ca_19913_v3' => 'car', 'Ca_19916_v3' => 'car', 'Ca_19975_v3' => 'car', 'CBR_g22876' => 'cbr', 'CBR_g22879' => 'cbr', 'CBR_g38491' => 'cbr', 'CBR_g54185' => 'cbr', 'CBR_g54190' => 'cbr', 'Cc02_g11020' => 'ccan', 'Cc02_g23920' => 'ccan', 'Cc02_g39860' => 'ccan', 'Cc02_g39870' => 'ccan', 'Cc03_g06760' => 'ccan', 'Cc06_g02450' => 'ccan', 'Cc09_g09450' => 'ccan', 'CDE02G1959' => 'cde', 'CDE04G0600' => 'cde', 'CDE07G1996' => 'cde', 'CDE07G2078' => 'cde', 'CDE11G0611' => 'cde', 'Cfa001683' => 'cfa', 'Cfa001734' => 'cfa', 'Cfa001737' => 'cfa', 'Cfa003751' => 'cfa', 'Cfa012019' => 'cfa', 'Cfa017353' => 'cfa', 'Cfa017732' => 'cfa', 'Cfa022464' => 'cfa', 'Ciclev10012400m.g' => 'ccl', 'Ciclev10021242m.g' => 'ccl', 'Ciclev10021302m.g' => 'ccl', 'Ciclev10021463m.g' => 'ccl', 'Ciclev10032359m.g' => 'ccl', 'CiPaw.01G081000' => 'cil', 'CiPaw.01G262500' => 'cil', 'CiPaw.01G269800' => 'cil', 'CiPaw.02G168400' => 'cil', 'CiPaw.05G119500' => 'cil', 'CiPaw.11G147300' => 'cil', 'ClCG01G003630' => 'cla', 'ClCG05G000510' => 'cla', 'ClCG05G002300' => 'cla', 'ClCG08G007650' => 'cla', 'ClCG10G021250' => 'cla', 'COL.COLO4_06218' => 'col', 'COL.COLO4_12538' => 'col', 'COL.COLO4_14775' => 'col', 'COL.COLO4_23875' => 'col', 'Cpa.g.sc141.16' => 'cpa', 'Cpa.g.sc169.16' => 'cpa', 'Cpa.g.sc244.4' => 'cpa', 'Cpa.g.sc244.5' => 'cpa', 'Cpa.g.sc29.87' => 'cpa', 'Cpa.g.sc53.115' => 'cpa', 'Cre03.g207502' => 'cre', 'Cre06.g277000' => 'cre', 'Cre09.g394050' => 'cre', 'CsaV3_3G007680' => 'csa', 'CsaV3_3G009710' => 'csa', 'CsaV3_3G034790' => 'csa', 'CsaV3_5G003750' => 'csa', 'CsaV3_6G036620' => 'csa', 'CSS0002288' => 'camsi', 'CSS0011250' => 'camsi', 'CSS0021619' => 'camsi', 'CSS0046701' => 'camsi', 'DCAR_006420' => 'dca', 'DCAR_006865' => 'dca', 'DCAR_008558' => 'dca', 'DCAR_028754' => 'dca', 'DCAR_028755' => 'dca', 'Dinv31218' => 'din', 'Dinv32371' => 'din', 'Dinv34250' => 'din', 'Dinv37156' => 'din', 'Dinv43704' => 'din', 'Duzib093G1811' => 'dzi', 'Duzib106G1622' => 'dzi', 'Duzib114G0504' => 'dzi', 'Duzib128G0338' => 'dzi', 'Duzib128G1577' => 'dzi', 'Duzib133G0104' => 'dzi', 'Duzib133G1080' => 'dzi', 'Duzib138G0324' => 'dzi', 'Duzib138G0394' => 'dzi', 'Duzib205G0122' => 'dzi', 'Duzib268G1020' => 'dzi', 'Duzib268G1359' => 'dzi', 'ECA232G3929' => 'eca', 'ECA236G2210' => 'eca', 'ECA236G2287' => 'eca', 'ECA240G4568' => 'eca', 'ECA247G0894' => 'eca', 'EL10Ac1g00200' => 'bvu', 'EL10Ac1g00886' => 'bvu', 'EL10As1g23091' => 'bvu', 'EL10As1g23092' => 'bvu', 'Eucgr.A01284' => 'egr', 'Eucgr.A01285' => 'egr', 'Eucgr.D02456' => 'egr', 'Eucgr.E00018' => 'egr', 'Eucgr.E01439' => 'egr', 'Eucgr.G02859' => 'egr', 'FAN01G0168' => 'fan', 'FAN01G0453' => 'fan', 'FAN01G2761' => 'fan', 'FAN02G1239' => 'fan', 'FAN03G0645' => 'fan', 'FAN03G2707' => 'fan', 'FAN03G2978' => 'fan', 'FAN04G0227' => 'fan', 'FAN06G0091' => 'fan', 'FAN06G1418' => 'fan', 'FAN06G1512' => 'fan', 'FAN06G1986' => 'fan', 'FAN06G2905' => 'fan', 'FAN06G4325' => 'fan', 'FAN08G0033' => 'fan', 'FAN09G0642' => 'fan', 'FAN10G1763' => 'fan', 'FAN10G2026' => 'fan', 'FAN10G2513' => 'fan', 'FAN10G3402' => 'fan', 'FAN10G3564' => 'fan', 'FAN10G3987' => 'fan', 'FAN13G1490' => 'fan', 'FAN14G5857' => 'fan', 'FAN18G1188' => 'fan', 'FvH4_5g00750' => 'fve', 'FvH4_6g13410' => 'fve', 'FvH4_7g11740' => 'fve', 'FvH4_7g17410' => 'fve', 'FvH4_7g18860' => 'fve', 'Glyma.01G099100' => 'gma', 'Glyma.01G142300' => 'gma', 'Glyma.03G025500' => 'gma', 'Glyma.03G069700' => 'gma', 'Glyma.03G260000' => 'gma', 'Glyma.09G269800' => 'gma', 'Glyma.10G208700' => 'gma', 'Glyma.18G220400' => 'gma', 'Glyma.20G182000' => 'gma', 'Gohir.A01G221726' => 'ghi', 'Gohir.A07G134600' => 'ghi', 'Gohir.A07G146000' => 'ghi', 'Gohir.A08G173900' => 'ghi', 'Gohir.A09G194900' => 'ghi', 'Gohir.A10G204100' => 'ghi', 'Gohir.A11G080600' => 'ghi', 'Gohir.A11G327500' => 'ghi', 'Gohir.A12G101800' => 'ghi', 'Gohir.D01G211200' => 'ghi', 'Gohir.D07G139200' => 'ghi', 'Gohir.D07G152100' => 'ghi', 'Gohir.D08G192600' => 'ghi', 'Gohir.D09G189200' => 'ghi', 'Gohir.D10G212000' => 'ghi', 'Gohir.D11G085200' => 'ghi', 'Gohir.D11G346400' => 'ghi', 'Gohir.D12G104800' => 'ghi', 'Gorai.001G151300' => 'gra', 'Gorai.001G174100' => 'gra', 'Gorai.002G257000' => 'gra', 'Gorai.004G202600' => 'gra', 'Gorai.007G090900' => 'gra', 'Gorai.007G376700' => 'gra', 'Gorai.008G114100' => 'gra', 'Gorai.011G237900' => 'gra', 'GSVIVG01005450001' => 'vvi', 'GSVIVG01016232001' => 'vvi', 'GSVIVG01026157001' => 'vvi', 'GSVIVG01027419001' => 'vvi', 'GSVIVG01027631001' => 'vvi', 'GSVIVG01034143001' => 'vvi', 'HanXRQChr03g0093921' => 'han', 'HanXRQChr04g0120001' => 'han', 'HanXRQChr04g0122561' => 'han', 'HanXRQChr09g0246851' => 'han', 'HanXRQChr10g0293311' => 'han', 'HanXRQChr13g0425231' => 'han', 'HanXRQChr16g0532571' => 'han', 'Haze_09050' => 'cav', 'Haze_15715' => 'cav', 'Haze_15716' => 'cav', 'Haze_16803' => 'cav', 'Haze_16850' => 'cav', 'Hma1.2p1_0301F.1_g118655' => 'hma', 'Hma1.2p1_0309F.1_g120590' => 'hma', 'Hma1.2p1_0936F.1_g238900' => 'hma', 'Hma1.2p1_3552F.1_g336740' => 'hma', 'HPP92_003520' => 'vpl', 'HPP92_006628' => 'vpl', 'HPP92_006645' => 'vpl', 'HPP92_014669' => 'vpl', 'HPP92_015077' => 'vpl', 'Hund16742' => 'sun', 'Hund17022' => 'sun', 'Lalb_Chr02g0152131' => 'lal', 'Lalb_Chr05g0225371' => 'lal', 'Lalb_Chr07g0189841' => 'lal', 'Lalb_Chr07g0192961' => 'lal', 'Lalb_Chr12g0208221' => 'lal', 'Lalb_Chr13g0291211' => 'lal', 'Lalb_Chr13g0291781' => 'lal', 'Lalb_Chr18g0044651' => 'lal', 'Lalb_Chr21g0313731' => 'lal', 'Lj1g0022533' => 'lja', 'Lj2A18T50' => 'lonja', 'Lj2A92G93' => 'lonja', 'Lj3A965T73' => 'lonja', 'Lj3g0000673' => 'lja', 'Lj3g0002666' => 'lja', 'Lj4g0016985' => 'lja', 'Lj5g0003625' => 'lja', 'Lj7A529G36' => 'lonja', 'Lj9A569T49' => 'lonja', 'Lj9A604T63' => 'lonja', 'Lsat_1_v5_gn_3_132060' => 'lsa', 'Lsat_1_v5_gn_4_68941' => 'lsa', 'Lsat_1_v5_gn_5_95580' => 'lsa', 'Lsat_1_v5_gn_7_161' => 'lsa', 'Lsat_1_v5_gn_7_7041' => 'lsa', 'Lsat_1_v5_gn_9_33481' => 'lsa', 'Lsat_1_v5_gn_9_68260' => 'lsa', 'Manes.01G073100' => 'mes', 'Manes.01G266300' => 'mes', 'Manes.02G033300' => 'mes', 'Manes.05G017900' => 'mes', 'Manes.05G046100' => 'mes', 'Manes.08G080900' => 'mes', 'Manes.10G049400' => 'mes', 'Mapoly0009s0186' => 'mpo', 'Mapoly0036s0118' => 'mpo', 'Mapoly0101s0046' => 'mpo', 'MBI04_g30218_MAGBIO' => 'mbi', 'MBI04_g35564_MAGBIO' => 'mbi', 'MBI12_g34011_MAGBIO' => 'mbi', 'MBI14_g04655_MAGBIO' => 'mbi', 'MCO07G653' => 'mco', 'MCO10G173' => 'mco', 'MD01G1087100' => 'mdo', 'MD01G1104200' => 'mdo', 'MD02G1205100' => 'mdo', 'MD04G1079200' => 'mdo', 'MD04G1131400' => 'mdo', 'MD07G1121600' => 'mdo', 'MD07G1157300' => 'mdo', 'MD07G1171000' => 'mdo', 'MD12G1144500' => 'mdo', 'Medtr1g094610' => 'mtr', 'Medtr4g021795' => 'mtr', 'Medtr4g023760' => 'mtr', 'Medtr7g118050' => 'mtr', 'MELO3C005582.2' => 'cme', 'MELO3C005989.2' => 'cme', 'MELO3C006192.2' => 'cme', 'MELO3C009248.2' => 'cme', 'MELO3C019817.2' => 'cme', 'Migut.B01625' => 'egut', 'Migut.B01915' => 'egut', 'Migut.F01721' => 'egut', 'Migut.J00314' => 'egut', 'MSTRG.20742' => 'ama', 'MSTRG.8134' => 'ama', 'Nitab4.5_0000096g0010' => 'nta', 'Nitab4.5_0000202g0030' => 'nta', 'Nitab4.5_0000216g0370' => 'nta', 'Nitab4.5_0000457g0230' => 'nta', 'Nitab4.5_0001702g0170' => 'nta', 'Nitab4.5_0003607g0010' => 'nta', 'Nitab4.5_0004917g0020' => 'nta', 'Nitab4.5_0007059g0010' => 'nta', 'Nitab4.5_0007184g0010' => 'nta', 'Nitab4.5_0007346g0020' => 'nta', 'Nn1g00410' => 'nnu', 'Nn1g01252' => 'nnu', 'Nn2g11168' => 'nnu', 'Nn2g13403' => 'nnu', 'Nn2g13760' => 'nnu', 'Nn4g26380' => 'nnu', 'Oeu000806.2' => 'oeu', 'Oeu005788.1' => 'oeu', 'Oeu006900.3' => 'oeu', 'Oeu007797.1' => 'oeu', 'Oeu011932.1' => 'oeu', 'Oeu022739.1' => 'oeu', 'Oeu037918.1' => 'oeu', 'Oeu055490.2' => 'oeu', 'Os01g0844400' => 'osa', 'Os02g0819100' => 'osa', 'Os03g0804300' => 'osa', 'Os05g0458000' => 'osa', 'Os07g0467800' => 'osa', 'Os12g0602200' => 'osa', 'Peaxi162Scf00013g03444' => 'pax', 'Peaxi162Scf00094g01120' => 'pax', 'Peaxi162Scf00191g01211' => 'pax', 'Peaxi162Scf00238g01110' => 'pax', 'Peaxi162Scf00330g00719' => 'pax', 'Peaxi162Scf00627g00018' => 'pax', 'PGR031G2686' => 'pgr', 'PGR042G0809' => 'pgr', 'PGR142G0193' => 'pgr', 'PGSC0003DMG400011066' => 'stu', 'PGSC0003DMG400012041' => 'stu', 'PGSC0003DMG400013678' => 'stu', 'PGSC0003DMG400023477' => 'stu', 'PGSC0003DMG400025956' => 'stu', 'PGSC0003DMG401019151' => 'stu', 'Phvul.006G116400' => 'pvu', 'Phvul.007G097300' => 'pvu', 'Phvul.010G015000' => 'pvu', 'Phvul.010G083900' => 'pvu', 'Potri.001G117100' => 'ptr', 'Potri.002G147300' => 'ptr', 'Potri.003G115600' => 'ptr', 'Potri.006G087400' => 'ptr', 'Potri.010G226100' => 'ptr', 'Potri.014G069200' => 'ptr', 'Potri.014G104000' => 'ptr', 'Potri.016G100200' => 'ptr', 'Pp3c10_20450' => 'ppa', 'Pp3c1_42400' => 'ppa', 'Pp3c3_24390' => 'ppa', 'Pp3c3_2860' => 'ppa', 'PRCOL_00003193' => 'pco', 'Prupe.2G144500' => 'ppe', 'Prupe.2G195700' => 'ppe', 'Prupe.2G209800' => 'ppe', 'Prupe.5G080000' => 'ppe', 'Prupe.6G257900' => 'ppe', 'Psat3g001160' => 'psa', 'Psat6g181880' => 'psa', 'Psat7g233720' => 'psa', 'PSO063G7587' => 'pso', 'PSO339G2145' => 'pso', 'PSO339G3369' => 'pso', 'PSO478G2747' => 'pso', 'PSO513G0140' => 'pso', 'PSO782G1614' => 'pso', 'PSO782G4889' => 'pso', 'PSO782G5485' => 'pso', 'PSO801G0241' => 'pso', 'QL07p048854' => 'qlo', 'QL08p046745' => 'qlo', 'QL08p052606' => 'qlo', 'QL08p053414' => 'qlo', 'QL08p054868' => 'qlo', 'RcHm_v2.0_Chr1g0350251' => 'rch', 'RcHm_v2.0_Chr1g0360851' => 'rch', 'RcHm_v2.0_Chr1g0362791' => 'rch', 'RcHm_v2.0_Chr3g0466281' => 'rch', 'RcHm_v2.0_Chr7g0201481' => 'rch', 'Rhsim01G0148600' => 'rsi', 'Rhsim05G0194400' => 'rsi', 'Rhsim07G0000700' => 'rsi', 'Rhsim07G0000800' => 'rsi', 'Rhsim07G0027900' => 'rsi', 'Rhsim09G0149500' => 'rsi', 'RhsimUnG0186900' => 'rsi', 'Sabra01G0089900' => 'sbr', 'Sabra02G0114700' => 'sbr', 'Sabra02G0116300' => 'sbr', 'Sabra03G0080100' => 'sbr', 'Sabra08G0024300' => 'sbr', 'Sabra10G0174300' => 'sbr', 'Sabra14G0048900' => 'sbr', 'Sabra14G0076500' => 'sbr', 'SalBow5G2513' => 'sbo', 'Sc01g0002300' => 'sci', 'Sc01g0004450' => 'sci', 'Sc06g0001680' => 'sci', 'Sc23g0003580' => 'sci', 'Sed0000913' => 'sed', 'Sed0001655' => 'sed', 'Sed0007745' => 'sed', 'Sed0010951' => 'sed', 'Sed0017599' => 'sed', 'Sed0021405' => 'sed', 'Sed0022810' => 'sed', 'SEGI_07099' => 'sgi', 'SEGI_11931' => 'sgi', 'SEGI_13187' => 'sgi', 'SEGI_29958' => 'sgi', 'SEGI_36351' => 'sgi', 'SGA_v2.0_scaffold126G33770' => 'sas', 'SGA_v2.0_scaffold153G37003' => 'sas', 'SGA_v2.0_scaffold2G01359' => 'sas', 'SGA_v2.0_scaffold5G03064' => 'sas', 'SGA_v2.0_scaffold95G28903' => 'sas', 'SHI12701' => 'shi', 'SHI26410' => 'shi', 'SHI38997' => 'shi', 'SHI53759' => 'shi', 'SHI53886' => 'shi', 'SHI54714' => 'shi', 'SMO011G0041' => 'smo', 'SMO146G0251' => 'smo', 'SMO160G0004' => 'smo', 'SMO174G0057' => 'smo', 'SMO244G0089' => 'smo', 'SMO296G0011' => 'smo', 'Solyc01g091280.3' => 'sly', 'Solyc05g047610.3' => 'sly', 'Solyc05g047640.3' => 'sly', 'Solyc05g055630.3' => 'sly', 'Solyc10g018160.2' => 'sly', 'Solyc10g084820.2' => 'sly', 'Solyc10g086565.2' => 'sly', 'Sopen01g037030' => 'spe', 'Sopen05g027920' => 'spe', 'Sopen05g034070' => 'spe', 'Sopen10g007260' => 'spe', 'Sopen10g034260' => 'spe', 'Sopen10g035950' => 'spe', 'Sp3g07710' => 'spa', 'Sp4g27420' => 'spa', 'Sp5g02450' => 'spa', 'Sp6g01280' => 'spa', 'Sp6g38480' => 'spa', 'Sp7g20780' => 'spa', 'TAR374G1413' => 'tar', 'TAR623G1777' => 'tar', 'TAR629G2370' => 'tar', 'TAR633G1759' => 'tar', 'TAR636G3387' => 'tar', 'THA.LOC104802447' => 'tha', 'THA.LOC104813916' => 'tha', 'THA.LOC104816423' => 'tha', 'THA.LOC104817246' => 'tha', 'THA.LOC104825895' => 'tha', 'Thecc.01G335200' => 'tca', 'Thecc.01G377400' => 'tca', 'Thecc.03G262200' => 'tca', 'Thecc.05G036800' => 'tca', 'Thecc.10G080500' => 'tca', 'Thecc.10G080800' => 'tca', 'Thhalv10001560m.g' => 'esa', 'Thhalv10006120m.g' => 'esa', 'Thhalv10014375m.g' => 'esa', 'Thhalv10021264m.g' => 'esa', 'Thhalv10028856m.g' => 'esa', 'TPR.G1914' => 'tpr', 'TPR.G4757' => 'tpr', 'TPR.G5595' => 'tpr', 'TWI14G0952' => 'twi', 'TWI14G1307' => 'twi', 'TWI38G2143' => 'twi', 'TWI59G0826' => 'twi', 'TWI77G0527' => 'twi', 'TWI81G0150' => 'twi', 'unitig_21.g21018' => 'ugi', 'unitig_26.g9725' => 'ugi', 'unitig_744.g24653' => 'ugi', 'unitig_749.g13778' => 'ugi', 'unitig_899.g15035' => 'ugi', 'vmacro04296' => 'vma', 'vmacro04852' => 'vma', 'vmacro13404' => 'vma', 'vmacro20169' => 'vma', 'vmacro21014' => 'vma', 'VMungo0331G0237' => 'vmu', 'VMungo0331G0706' => 'vmu', 'VMungo0331G1361' => 'vmu', 'VMungo0331G1489' => 'vmu', 'VMungo0540G1037' => 'vmu', 'VMungo0720G2487' => 'vmu', 'VMungo0720G2721' => 'vmu', 'Zm00001eb086860' => 'zma', 'Zm00001eb104760' => 'zma', 'Zm00001eb148220' => 'zma', 'Zm00001eb259030' => 'zma', 'Zm00001eb289590' => 'zma', 'Zm00001eb420150' => 'zma' ), 'gf_id' => 'HOM05D000968', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000968' ), 'data_identifier' => 'HOM05D000968', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000968', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p31690' => 'bna', 'A03p36040' => 'bna', 'A03p53730' => 'bna', 'A04p01410' => 'bna', 'A05p05420' => 'bna', 'A05p39630' => 'bna', 'A05p39640' => 'bna', 'A09p00970' => 'bna', 'A09p53060' => 'bna', 'A10p31890' => 'bna', 'Aa31LG10G15040' => 'aar', 'Aa31LG1G21090' => 'aar', 'Aa31LG1G26900' => 'aar', 'Aa31LG3G1820' => 'aar', 'Aa31LG5G1100' => 'aar', 'Aa31LG6G4740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2265' => 'aag', 'Actinidia07998' => 'ach', 'Actinidia11266' => 'ach', 'Actinidia12682' => 'ach', 'Actinidia26479' => 'ach', 'Actinidia31406' => 'ach', 'Actinidia32437' => 'ach', 'Actinidia38862' => 'ach', 'Ah.05g174230' => 'amhyb', 'Ah.05g179070' => 'amhyb', 'Ah.05g179090' => 'amhyb', 'Ah.12g059950' => 'amhyb', 'AL3G20480' => 'aly', 'AL4G44520' => 'aly', 'AL5G43110' => 'aly', 'AL6G13890' => 'aly', 'AL6G52620' => 'aly', 'AL7G30830' => 'aly', 'Aqoxy1G00899' => 'aox', 'Aqoxy5G04333' => 'aox', 'Aqoxy7G00641' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3IZ0NN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4EF6AW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W9P8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79GA3M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C43NQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFCU6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G95YVJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCHK29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LU1UG8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX91RN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGB4B1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8DA0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9H7JI' => 'arhy', 'AT3G09320' => 'ath', 'AT3G60800' => 'ath', 'AT4G00840' => 'ath', 'AT4G22750' => 'ath', 'AT5G04270' => 'ath', 'ATR0090G003' => 'atr', 'ATR0559G349' => 'atr', 'ATR0680G261' => 'atr', 'ATR0810G048' => 'atr', 'Atru.chr12.831' => 'acertr', 'Atru.chr5.303' => 'acertr', 'Atru.chr5.748' => 'acertr', 'Atru.chr8.1999' => 'acertr', 'Atru.chr9.1436' => 'acertr', 'AUR62004211' => 'cqu', 'AUR62004548' => 'cqu', 'AUR62013637' => 'cqu', 'AUR62022662' => 'cqu', 'AUR62025777' => 'cqu', 'AUR62042386' => 'cqu', 'BcaB01g02310' => 'bca', 'BcaB01g06062' => 'bca', 'BcaB02g08975' => 'bca', 'BcaB02g08980' => 'bca', 'BcaC01g04228' => 'bca', 'BcaC01g06830' => 'bca', 'BcaC02g10186' => 'bca', 'BcaC02g12214' => 'bca', 'BcaC04g24101' => 'bca', 'BcaC05g29520' => 'bca', 'BcaC05g29661' => 'bca', 'BcaC06g32130' => 'bca', 'BcaC06g32131' => 'bca', 'BcaC07g40601' => 'bca', 'BcaC07g42641' => 'bca', 'BcaNung01038' => 'bca', 'BcaNung01676' => 'bca', 'BcaNung02480' => 'bca', 'BcaNung07376' => 'bca', 'BolC3t16146H' => 'bol', 'BolC3t16637H' => 'bol', 'BolC4t22257H' => 'bol', 'BolC4t24728H' => 'bol', 'BolC5t34517H' => 'bol', 'BolC7t45703H' => 'bol', 'BolC8t51166H' => 'bol', 'BolC9t53038H' => 'bol', 'BolC9t60000H' => 'bol', 'BraA01t01345Z' => 'bra', 'BraA01t01346Z' => 'bra', 'BraA01t01348Z' => 'bra', 'BraA03t12347Z' => 'bra', 'BraA03t12775Z' => 'bra', 'BraA03t14439Z' => 'bra', 'BraA04t15860Z' => 'bra', 'BraA05t19511Z' => 'bra', 'BraA05t22746Z' => 'bra', 'BraA09t35767Z' => 'bra', 'BraA09t40732Z' => 'bra', 'BraA10t45233Z' => 'bra', 'C03p38720' => 'bna', 'C03p43680' => 'bna', 'C04p06350' => 'bna', 'C04p31800' => 'bna', 'C05p58680' => 'bna', 'C07p52110' => 'bna', 'C08p35760' => 'bna', 'C09p01050' => 'bna', 'C09p72600' => 'bna', 'CAN.G106.2' => 'can', 'CAN.G1482.1' => 'can', 'CAN.G324.12' => 'can', 'CAN.G388.20' => 'can', 'CAN.G412.7' => 'can', 'CAN.G694.32' => 'can', 'CAN.G92.12' => 'can', 'CANSAT11G2353' => 'cansat', 'CANSAT21G1398' => 'cansat', 'CANSAT56G2456' => 'cansat', 'CANSAT56G3031' => 'cansat', 'CANSAT56G4539' => 'cansat', 'CARHR083680' => 'chi', 'CARHR171190' => 'chi', 'CARHR209010' => 'chi', 'CARHR229680' => 'chi', 'CARHR249490' => 'chi', 'Carub.0003s0844' => 'cru', 'Carub.0005s2755' => 'cru', 'Carub.0006s0322' => 'cru', 'Carub.0006s3586' => 'cru', 'Carub.0007s1855' => 'cru', 'Ca_07808_v3' => 'car', 'Ca_09535_v3' => 'car', 'Ca_10548_v3' => 'car', 'Ca_19913_v3' => 'car', 'Ca_19916_v3' => 'car', 'Ca_19975_v3' => 'car', 'CBR_g22876' => 'cbr', 'CBR_g22879' => 'cbr', 'CBR_g38491' => 'cbr', 'CBR_g54185' => 'cbr', 'CBR_g54190' => 'cbr', 'Cc02_g11020' => 'ccan', 'Cc02_g23920' => 'ccan', 'Cc02_g39860' => 'ccan', 'Cc02_g39870' => 'ccan', 'Cc03_g06760' => 'ccan', 'Cc06_g02450' => 'ccan', 'Cc09_g09450' => 'ccan', 'CDE02G1959' => 'cde', 'CDE04G0600' => 'cde', 'CDE07G1996' => 'cde', 'CDE07G2078' => 'cde', 'CDE11G0611' => 'cde', 'Cfa001683' => 'cfa', 'Cfa001734' => 'cfa', 'Cfa001737' => 'cfa', 'Cfa003751' => 'cfa', 'Cfa012019' => 'cfa', 'Cfa017353' => 'cfa', 'Cfa017732' => 'cfa', 'Cfa022464' => 'cfa', 'Ciclev10012400m.g' => 'ccl', 'Ciclev10021242m.g' => 'ccl', 'Ciclev10021302m.g' => 'ccl', 'Ciclev10021463m.g' => 'ccl', 'Ciclev10032359m.g' => 'ccl', 'CiPaw.01G081000' => 'cil', 'CiPaw.01G262500' => 'cil', 'CiPaw.01G269800' => 'cil', 'CiPaw.02G168400' => 'cil', 'CiPaw.05G119500' => 'cil', 'CiPaw.11G147300' => 'cil', 'ClCG01G003630' => 'cla', 'ClCG05G000510' => 'cla', 'ClCG05G002300' => 'cla', 'ClCG08G007650' => 'cla', 'ClCG10G021250' => 'cla', 'COL.COLO4_06218' => 'col', 'COL.COLO4_12538' => 'col', 'COL.COLO4_14775' => 'col', 'COL.COLO4_23875' => 'col', 'Cpa.g.sc141.16' => 'cpa', 'Cpa.g.sc169.16' => 'cpa', 'Cpa.g.sc244.4' => 'cpa', 'Cpa.g.sc244.5' => 'cpa', 'Cpa.g.sc29.87' => 'cpa', 'Cpa.g.sc53.115' => 'cpa', 'Cre03.g207502' => 'cre', 'Cre06.g277000' => 'cre', 'Cre09.g394050' => 'cre', 'CsaV3_3G007680' => 'csa', 'CsaV3_3G009710' => 'csa', 'CsaV3_3G034790' => 'csa', 'CsaV3_5G003750' => 'csa', 'CsaV3_6G036620' => 'csa', 'CSS0002288' => 'camsi', 'CSS0011250' => 'camsi', 'CSS0021619' => 'camsi', 'CSS0046701' => 'camsi', 'DCAR_006420' => 'dca', 'DCAR_006865' => 'dca', 'DCAR_008558' => 'dca', 'DCAR_028754' => 'dca', 'DCAR_028755' => 'dca', 'Dinv31218' => 'din', 'Dinv32371' => 'din', 'Dinv34250' => 'din', 'Dinv37156' => 'din', 'Dinv43704' => 'din', 'Duzib093G1811' => 'dzi', 'Duzib106G1622' => 'dzi', 'Duzib114G0504' => 'dzi', 'Duzib128G0338' => 'dzi', 'Duzib128G1577' => 'dzi', 'Duzib133G0104' => 'dzi', 'Duzib133G1080' => 'dzi', 'Duzib138G0324' => 'dzi', 'Duzib138G0394' => 'dzi', 'Duzib205G0122' => 'dzi', 'Duzib268G1020' => 'dzi', 'Duzib268G1359' => 'dzi', 'ECA232G3929' => 'eca', 'ECA236G2210' => 'eca', 'ECA236G2287' => 'eca', 'ECA240G4568' => 'eca', 'ECA247G0894' => 'eca', 'EL10Ac1g00200' => 'bvu', 'EL10Ac1g00886' => 'bvu', 'EL10As1g23091' => 'bvu', 'EL10As1g23092' => 'bvu', 'Eucgr.A01284' => 'egr', 'Eucgr.A01285' => 'egr', 'Eucgr.D02456' => 'egr', 'Eucgr.E00018' => 'egr', 'Eucgr.E01439' => 'egr', 'Eucgr.G02859' => 'egr', 'FAN01G0168' => 'fan', 'FAN01G0453' => 'fan', 'FAN01G2761' => 'fan', 'FAN02G1239' => 'fan', 'FAN03G0645' => 'fan', 'FAN03G2707' => 'fan', 'FAN03G2978' => 'fan', 'FAN04G0227' => 'fan', 'FAN06G0091' => 'fan', 'FAN06G1418' => 'fan', 'FAN06G1512' => 'fan', 'FAN06G1986' => 'fan', 'FAN06G2905' => 'fan', 'FAN06G4325' => 'fan', 'FAN08G0033' => 'fan', 'FAN09G0642' => 'fan', 'FAN10G1763' => 'fan', 'FAN10G2026' => 'fan', 'FAN10G2513' => 'fan', 'FAN10G3402' => 'fan', 'FAN10G3564' => 'fan', 'FAN10G3987' => 'fan', 'FAN13G1490' => 'fan', 'FAN14G5857' => 'fan', 'FAN18G1188' => 'fan', 'FvH4_5g00750' => 'fve', 'FvH4_6g13410' => 'fve', 'FvH4_7g11740' => 'fve', 'FvH4_7g17410' => 'fve', 'FvH4_7g18860' => 'fve', 'Glyma.01G099100' => 'gma', 'Glyma.01G142300' => 'gma', 'Glyma.03G025500' => 'gma', 'Glyma.03G069700' => 'gma', 'Glyma.03G260000' => 'gma', 'Glyma.09G269800' => 'gma', 'Glyma.10G208700' => 'gma', 'Glyma.18G220400' => 'gma', 'Glyma.20G182000' => 'gma', 'Gohir.A01G221726' => 'ghi', 'Gohir.A07G134600' => 'ghi', 'Gohir.A07G146000' => 'ghi', 'Gohir.A08G173900' => 'ghi', 'Gohir.A09G194900' => 'ghi', 'Gohir.A10G204100' => 'ghi', 'Gohir.A11G080600' => 'ghi', 'Gohir.A11G327500' => 'ghi', 'Gohir.A12G101800' => 'ghi', 'Gohir.D01G211200' => 'ghi', 'Gohir.D07G139200' => 'ghi', 'Gohir.D07G152100' => 'ghi', 'Gohir.D08G192600' => 'ghi', 'Gohir.D09G189200' => 'ghi', 'Gohir.D10G212000' => 'ghi', 'Gohir.D11G085200' => 'ghi', 'Gohir.D11G346400' => 'ghi', 'Gohir.D12G104800' => 'ghi', 'Gorai.001G151300' => 'gra', 'Gorai.001G174100' => 'gra', 'Gorai.002G257000' => 'gra', 'Gorai.004G202600' => 'gra', 'Gorai.007G090900' => 'gra', 'Gorai.007G376700' => 'gra', 'Gorai.008G114100' => 'gra', 'Gorai.011G237900' => 'gra', 'GSVIVG01005450001' => 'vvi', 'GSVIVG01016232001' => 'vvi', 'GSVIVG01026157001' => 'vvi', 'GSVIVG01027419001' => 'vvi', 'GSVIVG01027631001' => 'vvi', 'GSVIVG01034143001' => 'vvi', 'HanXRQChr03g0093921' => 'han', 'HanXRQChr04g0120001' => 'han', 'HanXRQChr04g0122561' => 'han', 'HanXRQChr09g0246851' => 'han', 'HanXRQChr10g0293311' => 'han', 'HanXRQChr13g0425231' => 'han', 'HanXRQChr16g0532571' => 'han', 'Haze_09050' => 'cav', 'Haze_15715' => 'cav', 'Haze_15716' => 'cav', 'Haze_16803' => 'cav', 'Haze_16850' => 'cav', 'Hma1.2p1_0301F.1_g118655' => 'hma', 'Hma1.2p1_0309F.1_g120590' => 'hma', 'Hma1.2p1_0936F.1_g238900' => 'hma', 'Hma1.2p1_3552F.1_g336740' => 'hma', 'HPP92_003520' => 'vpl', 'HPP92_006628' => 'vpl', 'HPP92_006645' => 'vpl', 'HPP92_014669' => 'vpl', 'HPP92_015077' => 'vpl', 'Hund16742' => 'sun', 'Hund17022' => 'sun', 'Lalb_Chr02g0152131' => 'lal', 'Lalb_Chr05g0225371' => 'lal', 'Lalb_Chr07g0189841' => 'lal', 'Lalb_Chr07g0192961' => 'lal', 'Lalb_Chr12g0208221' => 'lal', 'Lalb_Chr13g0291211' => 'lal', 'Lalb_Chr13g0291781' => 'lal', 'Lalb_Chr18g0044651' => 'lal', 'Lalb_Chr21g0313731' => 'lal', 'Lj1g0022533' => 'lja', 'Lj2A18T50' => 'lonja', 'Lj2A92G93' => 'lonja', 'Lj3A965T73' => 'lonja', 'Lj3g0000673' => 'lja', 'Lj3g0002666' => 'lja', 'Lj4g0016985' => 'lja', 'Lj5g0003625' => 'lja', 'Lj7A529G36' => 'lonja', 'Lj9A569T49' => 'lonja', 'Lj9A604T63' => 'lonja', 'Lsat_1_v5_gn_3_132060' => 'lsa', 'Lsat_1_v5_gn_4_68941' => 'lsa', 'Lsat_1_v5_gn_5_95580' => 'lsa', 'Lsat_1_v5_gn_7_161' => 'lsa', 'Lsat_1_v5_gn_7_7041' => 'lsa', 'Lsat_1_v5_gn_9_33481' => 'lsa', 'Lsat_1_v5_gn_9_68260' => 'lsa', 'Manes.01G073100' => 'mes', 'Manes.01G266300' => 'mes', 'Manes.02G033300' => 'mes', 'Manes.05G017900' => 'mes', 'Manes.05G046100' => 'mes', 'Manes.08G080900' => 'mes', 'Manes.10G049400' => 'mes', 'Mapoly0009s0186' => 'mpo', 'Mapoly0036s0118' => 'mpo', 'Mapoly0101s0046' => 'mpo', 'MBI04_g30218_MAGBIO' => 'mbi', 'MBI04_g35564_MAGBIO' => 'mbi', 'MBI12_g34011_MAGBIO' => 'mbi', 'MBI14_g04655_MAGBIO' => 'mbi', 'MCO07G653' => 'mco', 'MCO10G173' => 'mco', 'MD01G1087100' => 'mdo', 'MD01G1104200' => 'mdo', 'MD02G1205100' => 'mdo', 'MD04G1079200' => 'mdo', 'MD04G1131400' => 'mdo', 'MD07G1121600' => 'mdo', 'MD07G1157300' => 'mdo', 'MD07G1171000' => 'mdo', 'MD12G1144500' => 'mdo', 'Medtr1g094610' => 'mtr', 'Medtr4g021795' => 'mtr', 'Medtr4g023760' => 'mtr', 'Medtr7g118050' => 'mtr', 'MELO3C005582.2' => 'cme', 'MELO3C005989.2' => 'cme', 'MELO3C006192.2' => 'cme', 'MELO3C009248.2' => 'cme', 'MELO3C019817.2' => 'cme', 'Migut.B01625' => 'egut', 'Migut.B01915' => 'egut', 'Migut.F01721' => 'egut', 'Migut.J00314' => 'egut', 'MSTRG.20742' => 'ama', 'MSTRG.8134' => 'ama', 'Nitab4.5_0000096g0010' => 'nta', 'Nitab4.5_0000202g0030' => 'nta', 'Nitab4.5_0000216g0370' => 'nta', 'Nitab4.5_0000457g0230' => 'nta', 'Nitab4.5_0001702g0170' => 'nta', 'Nitab4.5_0003607g0010' => 'nta', 'Nitab4.5_0004917g0020' => 'nta', 'Nitab4.5_0007059g0010' => 'nta', 'Nitab4.5_0007184g0010' => 'nta', 'Nitab4.5_0007346g0020' => 'nta', 'Nn1g00410' => 'nnu', 'Nn1g01252' => 'nnu', 'Nn2g11168' => 'nnu', 'Nn2g13403' => 'nnu', 'Nn2g13760' => 'nnu', 'Nn4g26380' => 'nnu', 'Oeu000806.2' => 'oeu', 'Oeu005788.1' => 'oeu', 'Oeu006900.3' => 'oeu', 'Oeu007797.1' => 'oeu', 'Oeu011932.1' => 'oeu', 'Oeu022739.1' => 'oeu', 'Oeu037918.1' => 'oeu', 'Oeu055490.2' => 'oeu', 'Os01g0844400' => 'osa', 'Os02g0819100' => 'osa', 'Os03g0804300' => 'osa', 'Os05g0458000' => 'osa', 'Os07g0467800' => 'osa', 'Os12g0602200' => 'osa', 'Peaxi162Scf00013g03444' => 'pax', 'Peaxi162Scf00094g01120' => 'pax', 'Peaxi162Scf00191g01211' => 'pax', 'Peaxi162Scf00238g01110' => 'pax', 'Peaxi162Scf00330g00719' => 'pax', 'Peaxi162Scf00627g00018' => 'pax', 'PGR031G2686' => 'pgr', 'PGR042G0809' => 'pgr', 'PGR142G0193' => 'pgr', 'PGSC0003DMG400011066' => 'stu', 'PGSC0003DMG400012041' => 'stu', 'PGSC0003DMG400013678' => 'stu', 'PGSC0003DMG400023477' => 'stu', 'PGSC0003DMG400025956' => 'stu', 'PGSC0003DMG401019151' => 'stu', 'Phvul.006G116400' => 'pvu', 'Phvul.007G097300' => 'pvu', 'Phvul.010G015000' => 'pvu', 'Phvul.010G083900' => 'pvu', 'Potri.001G117100' => 'ptr', 'Potri.002G147300' => 'ptr', 'Potri.003G115600' => 'ptr', 'Potri.006G087400' => 'ptr', 'Potri.010G226100' => 'ptr', 'Potri.014G069200' => 'ptr', 'Potri.014G104000' => 'ptr', 'Potri.016G100200' => 'ptr', 'Pp3c10_20450' => 'ppa', 'Pp3c1_42400' => 'ppa', 'Pp3c3_24390' => 'ppa', 'Pp3c3_2860' => 'ppa', 'PRCOL_00003193' => 'pco', 'Prupe.2G144500' => 'ppe', 'Prupe.2G195700' => 'ppe', 'Prupe.2G209800' => 'ppe', 'Prupe.5G080000' => 'ppe', 'Prupe.6G257900' => 'ppe', 'Psat3g001160' => 'psa', 'Psat6g181880' => 'psa', 'Psat7g233720' => 'psa', 'PSO063G7587' => 'pso', 'PSO339G2145' => 'pso', 'PSO339G3369' => 'pso', 'PSO478G2747' => 'pso', 'PSO513G0140' => 'pso', 'PSO782G1614' => 'pso', 'PSO782G4889' => 'pso', 'PSO782G5485' => 'pso', 'PSO801G0241' => 'pso', 'QL07p048854' => 'qlo', 'QL08p046745' => 'qlo', 'QL08p052606' => 'qlo', 'QL08p053414' => 'qlo', 'QL08p054868' => 'qlo', 'RcHm_v2.0_Chr1g0350251' => 'rch', 'RcHm_v2.0_Chr1g0360851' => 'rch', 'RcHm_v2.0_Chr1g0362791' => 'rch', 'RcHm_v2.0_Chr3g0466281' => 'rch', 'RcHm_v2.0_Chr7g0201481' => 'rch', 'Rhsim01G0148600' => 'rsi', 'Rhsim05G0194400' => 'rsi', 'Rhsim07G0000700' => 'rsi', 'Rhsim07G0000800' => 'rsi', 'Rhsim07G0027900' => 'rsi', 'Rhsim09G0149500' => 'rsi', 'RhsimUnG0186900' => 'rsi', 'Sabra01G0089900' => 'sbr', 'Sabra02G0114700' => 'sbr', 'Sabra02G0116300' => 'sbr', 'Sabra03G0080100' => 'sbr', 'Sabra08G0024300' => 'sbr', 'Sabra10G0174300' => 'sbr', 'Sabra14G0048900' => 'sbr', 'Sabra14G0076500' => 'sbr', 'SalBow5G2513' => 'sbo', 'Sc01g0002300' => 'sci', 'Sc01g0004450' => 'sci', 'Sc06g0001680' => 'sci', 'Sc23g0003580' => 'sci', 'Sed0000913' => 'sed', 'Sed0001655' => 'sed', 'Sed0007745' => 'sed', 'Sed0010951' => 'sed', 'Sed0017599' => 'sed', 'Sed0021405' => 'sed', 'Sed0022810' => 'sed', 'SEGI_07099' => 'sgi', 'SEGI_11931' => 'sgi', 'SEGI_13187' => 'sgi', 'SEGI_29958' => 'sgi', 'SEGI_36351' => 'sgi', 'SGA_v2.0_scaffold126G33770' => 'sas', 'SGA_v2.0_scaffold153G37003' => 'sas', 'SGA_v2.0_scaffold2G01359' => 'sas', 'SGA_v2.0_scaffold5G03064' => 'sas', 'SGA_v2.0_scaffold95G28903' => 'sas', 'SHI12701' => 'shi', 'SHI26410' => 'shi', 'SHI38997' => 'shi', 'SHI53759' => 'shi', 'SHI53886' => 'shi', 'SHI54714' => 'shi', 'SMO011G0041' => 'smo', 'SMO146G0251' => 'smo', 'SMO160G0004' => 'smo', 'SMO174G0057' => 'smo', 'SMO244G0089' => 'smo', 'SMO296G0011' => 'smo', 'Solyc01g091280.3' => 'sly', 'Solyc05g047610.3' => 'sly', 'Solyc05g047640.3' => 'sly', 'Solyc05g055630.3' => 'sly', 'Solyc10g018160.2' => 'sly', 'Solyc10g084820.2' => 'sly', 'Solyc10g086565.2' => 'sly', 'Sopen01g037030' => 'spe', 'Sopen05g027920' => 'spe', 'Sopen05g034070' => 'spe', 'Sopen10g007260' => 'spe', 'Sopen10g034260' => 'spe', 'Sopen10g035950' => 'spe', 'Sp3g07710' => 'spa', 'Sp4g27420' => 'spa', 'Sp5g02450' => 'spa', 'Sp6g01280' => 'spa', 'Sp6g38480' => 'spa', 'Sp7g20780' => 'spa', 'TAR374G1413' => 'tar', 'TAR623G1777' => 'tar', 'TAR629G2370' => 'tar', 'TAR633G1759' => 'tar', 'TAR636G3387' => 'tar', 'THA.LOC104802447' => 'tha', 'THA.LOC104813916' => 'tha', 'THA.LOC104816423' => 'tha', 'THA.LOC104817246' => 'tha', 'THA.LOC104825895' => 'tha', 'Thecc.01G335200' => 'tca', 'Thecc.01G377400' => 'tca', 'Thecc.03G262200' => 'tca', 'Thecc.05G036800' => 'tca', 'Thecc.10G080500' => 'tca', 'Thecc.10G080800' => 'tca', 'Thhalv10001560m.g' => 'esa', 'Thhalv10006120m.g' => 'esa', 'Thhalv10014375m.g' => 'esa', 'Thhalv10021264m.g' => 'esa', 'Thhalv10028856m.g' => 'esa', 'TPR.G1914' => 'tpr', 'TPR.G4757' => 'tpr', 'TPR.G5595' => 'tpr', 'TWI14G0952' => 'twi', 'TWI14G1307' => 'twi', 'TWI38G2143' => 'twi', 'TWI59G0826' => 'twi', 'TWI77G0527' => 'twi', 'TWI81G0150' => 'twi', 'unitig_21.g21018' => 'ugi', 'unitig_26.g9725' => 'ugi', 'unitig_744.g24653' => 'ugi', 'unitig_749.g13778' => 'ugi', 'unitig_899.g15035' => 'ugi', 'vmacro04296' => 'vma', 'vmacro04852' => 'vma', 'vmacro13404' => 'vma', 'vmacro20169' => 'vma', 'vmacro21014' => 'vma', 'VMungo0331G0237' => 'vmu', 'VMungo0331G0706' => 'vmu', 'VMungo0331G1361' => 'vmu', 'VMungo0331G1489' => 'vmu', 'VMungo0540G1037' => 'vmu', 'VMungo0720G2487' => 'vmu', 'VMungo0720G2721' => 'vmu', 'Zm00001eb086860' => 'zma', 'Zm00001eb104760' => 'zma', 'Zm00001eb148220' => 'zma', 'Zm00001eb259030' => 'zma', 'Zm00001eb289590' => 'zma', 'Zm00001eb420150' => 'zma' ) $gf_id = 'HOM05D000968' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000968' ) $data_identifier = 'HOM05D000968' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 19, 'bol' => (int) 9, 'bra' => (int) 12, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 5, 'ccan' => (int) 7, 'cde' => (int) 5, 'cfa' => (int) 8, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 4, 'dca' => (int) 5, 'din' => (int) 5, 'dzi' => (int) 12, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 25, 'fve' => (int) 5, 'gma' => (int) 9, 'ghi' => (int) 18, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 7, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 5, 'sun' => (int) 2, 'lal' => (int) 9, 'lja' => (int) 5, 'lonja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 9, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 2, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 3, 'stu' => (int) 6, 'pvu' => (int) 4, 'ptr' => (int) 8, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 3, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 1, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 5, 'sas' => (int) 5, 'shi' => (int) 6, 'smo' => (int) 6, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 3, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420150' $species_info = array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ) $local_species = 'dca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000968', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p31690' => 'bna', 'A03p36040' => 'bna', 'A03p53730' => 'bna', 'A04p01410' => 'bna', 'A05p05420' => 'bna', 'A05p39630' => 'bna', 'A05p39640' => 'bna', 'A09p00970' => 'bna', 'A09p53060' => 'bna', 'A10p31890' => 'bna', 'Aa31LG10G15040' => 'aar', 'Aa31LG1G21090' => 'aar', 'Aa31LG1G26900' => 'aar', 'Aa31LG3G1820' => 'aar', 'Aa31LG5G1100' => 'aar', 'Aa31LG6G4740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2265' => 'aag', 'Actinidia07998' => 'ach', 'Actinidia11266' => 'ach', 'Actinidia12682' => 'ach', 'Actinidia26479' => 'ach', 'Actinidia31406' => 'ach', 'Actinidia32437' => 'ach', 'Actinidia38862' => 'ach', 'Ah.05g174230' => 'amhyb', 'Ah.05g179070' => 'amhyb', 'Ah.05g179090' => 'amhyb', 'Ah.12g059950' => 'amhyb', 'AL3G20480' => 'aly', 'AL4G44520' => 'aly', 'AL5G43110' => 'aly', 'AL6G13890' => 'aly', 'AL6G52620' => 'aly', 'AL7G30830' => 'aly', 'Aqoxy1G00899' => 'aox', 'Aqoxy5G04333' => 'aox', 'Aqoxy7G00641' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3IZ0NN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4EF6AW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W9P8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79GA3M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C43NQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFCU6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G95YVJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCHK29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LU1UG8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX91RN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGB4B1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8DA0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9H7JI' => 'arhy', 'AT3G09320' => 'ath', 'AT3G60800' => 'ath', 'AT4G00840' => 'ath', 'AT4G22750' => 'ath', 'AT5G04270' => 'ath', 'ATR0090G003' => 'atr', 'ATR0559G349' => 'atr', 'ATR0680G261' => 'atr', 'ATR0810G048' => 'atr', 'Atru.chr12.831' => 'acertr', 'Atru.chr5.303' => 'acertr', 'Atru.chr5.748' => 'acertr', 'Atru.chr8.1999' => 'acertr', 'Atru.chr9.1436' => 'acertr', 'AUR62004211' => 'cqu', 'AUR62004548' => 'cqu', 'AUR62013637' => 'cqu', 'AUR62022662' => 'cqu', 'AUR62025777' => 'cqu', 'AUR62042386' => 'cqu', 'BcaB01g02310' => 'bca', 'BcaB01g06062' => 'bca', 'BcaB02g08975' => 'bca', 'BcaB02g08980' => 'bca', 'BcaC01g04228' => 'bca', 'BcaC01g06830' => 'bca', 'BcaC02g10186' => 'bca', 'BcaC02g12214' => 'bca', 'BcaC04g24101' => 'bca', 'BcaC05g29520' => 'bca', 'BcaC05g29661' => 'bca', 'BcaC06g32130' => 'bca', 'BcaC06g32131' => 'bca', 'BcaC07g40601' => 'bca', 'BcaC07g42641' => 'bca', 'BcaNung01038' => 'bca', 'BcaNung01676' => 'bca', 'BcaNung02480' => 'bca', 'BcaNung07376' => 'bca', 'BolC3t16146H' => 'bol', 'BolC3t16637H' => 'bol', 'BolC4t22257H' => 'bol', 'BolC4t24728H' => 'bol', 'BolC5t34517H' => 'bol', 'BolC7t45703H' => 'bol', 'BolC8t51166H' => 'bol', 'BolC9t53038H' => 'bol', 'BolC9t60000H' => 'bol', 'BraA01t01345Z' => 'bra', 'BraA01t01346Z' => 'bra', 'BraA01t01348Z' => 'bra', 'BraA03t12347Z' => 'bra', 'BraA03t12775Z' => 'bra', 'BraA03t14439Z' => 'bra', 'BraA04t15860Z' => 'bra', 'BraA05t19511Z' => 'bra', 'BraA05t22746Z' => 'bra', 'BraA09t35767Z' => 'bra', 'BraA09t40732Z' => 'bra', 'BraA10t45233Z' => 'bra', 'C03p38720' => 'bna', 'C03p43680' => 'bna', 'C04p06350' => 'bna', 'C04p31800' => 'bna', 'C05p58680' => 'bna', 'C07p52110' => 'bna', 'C08p35760' => 'bna', 'C09p01050' => 'bna', 'C09p72600' => 'bna', 'CAN.G106.2' => 'can', 'CAN.G1482.1' => 'can', 'CAN.G324.12' => 'can', 'CAN.G388.20' => 'can', 'CAN.G412.7' => 'can', 'CAN.G694.32' => 'can', 'CAN.G92.12' => 'can', 'CANSAT11G2353' => 'cansat', 'CANSAT21G1398' => 'cansat', 'CANSAT56G2456' => 'cansat', 'CANSAT56G3031' => 'cansat', 'CANSAT56G4539' => 'cansat', 'CARHR083680' => 'chi', 'CARHR171190' => 'chi', 'CARHR209010' => 'chi', 'CARHR229680' => 'chi', 'CARHR249490' => 'chi', 'Carub.0003s0844' => 'cru', 'Carub.0005s2755' => 'cru', 'Carub.0006s0322' => 'cru', 'Carub.0006s3586' => 'cru', 'Carub.0007s1855' => 'cru', 'Ca_07808_v3' => 'car', 'Ca_09535_v3' => 'car', 'Ca_10548_v3' => 'car', 'Ca_19913_v3' => 'car', 'Ca_19916_v3' => 'car', 'Ca_19975_v3' => 'car', 'CBR_g22876' => 'cbr', 'CBR_g22879' => 'cbr', 'CBR_g38491' => 'cbr', 'CBR_g54185' => 'cbr', 'CBR_g54190' => 'cbr', 'Cc02_g11020' => 'ccan', 'Cc02_g23920' => 'ccan', 'Cc02_g39860' => 'ccan', 'Cc02_g39870' => 'ccan', 'Cc03_g06760' => 'ccan', 'Cc06_g02450' => 'ccan', 'Cc09_g09450' => 'ccan', 'CDE02G1959' => 'cde', 'CDE04G0600' => 'cde', 'CDE07G1996' => 'cde', 'CDE07G2078' => 'cde', 'CDE11G0611' => 'cde', 'Cfa001683' => 'cfa', 'Cfa001734' => 'cfa', 'Cfa001737' => 'cfa', 'Cfa003751' => 'cfa', 'Cfa012019' => 'cfa', 'Cfa017353' => 'cfa', 'Cfa017732' => 'cfa', 'Cfa022464' => 'cfa', 'Ciclev10012400m.g' => 'ccl', 'Ciclev10021242m.g' => 'ccl', 'Ciclev10021302m.g' => 'ccl', 'Ciclev10021463m.g' => 'ccl', 'Ciclev10032359m.g' => 'ccl', 'CiPaw.01G081000' => 'cil', 'CiPaw.01G262500' => 'cil', 'CiPaw.01G269800' => 'cil', 'CiPaw.02G168400' => 'cil', 'CiPaw.05G119500' => 'cil', 'CiPaw.11G147300' => 'cil', 'ClCG01G003630' => 'cla', 'ClCG05G000510' => 'cla', 'ClCG05G002300' => 'cla', 'ClCG08G007650' => 'cla', 'ClCG10G021250' => 'cla', 'COL.COLO4_06218' => 'col', 'COL.COLO4_12538' => 'col', 'COL.COLO4_14775' => 'col', 'COL.COLO4_23875' => 'col', 'Cpa.g.sc141.16' => 'cpa', 'Cpa.g.sc169.16' => 'cpa', 'Cpa.g.sc244.4' => 'cpa', 'Cpa.g.sc244.5' => 'cpa', 'Cpa.g.sc29.87' => 'cpa', 'Cpa.g.sc53.115' => 'cpa', 'Cre03.g207502' => 'cre', 'Cre06.g277000' => 'cre', 'Cre09.g394050' => 'cre', 'CsaV3_3G007680' => 'csa', 'CsaV3_3G009710' => 'csa', 'CsaV3_3G034790' => 'csa', 'CsaV3_5G003750' => 'csa', 'CsaV3_6G036620' => 'csa', 'CSS0002288' => 'camsi', 'CSS0011250' => 'camsi', 'CSS0021619' => 'camsi', 'CSS0046701' => 'camsi', 'DCAR_006420' => 'dca', 'DCAR_006865' => 'dca', 'DCAR_008558' => 'dca', 'DCAR_028754' => 'dca', 'DCAR_028755' => 'dca', 'Dinv31218' => 'din', 'Dinv32371' => 'din', 'Dinv34250' => 'din', 'Dinv37156' => 'din', 'Dinv43704' => 'din', 'Duzib093G1811' => 'dzi', 'Duzib106G1622' => 'dzi', 'Duzib114G0504' => 'dzi', 'Duzib128G0338' => 'dzi', 'Duzib128G1577' => 'dzi', 'Duzib133G0104' => 'dzi', 'Duzib133G1080' => 'dzi', 'Duzib138G0324' => 'dzi', 'Duzib138G0394' => 'dzi', 'Duzib205G0122' => 'dzi', 'Duzib268G1020' => 'dzi', 'Duzib268G1359' => 'dzi', 'ECA232G3929' => 'eca', 'ECA236G2210' => 'eca', 'ECA236G2287' => 'eca', 'ECA240G4568' => 'eca', 'ECA247G0894' => 'eca', 'EL10Ac1g00200' => 'bvu', 'EL10Ac1g00886' => 'bvu', 'EL10As1g23091' => 'bvu', 'EL10As1g23092' => 'bvu', 'Eucgr.A01284' => 'egr', 'Eucgr.A01285' => 'egr', 'Eucgr.D02456' => 'egr', 'Eucgr.E00018' => 'egr', 'Eucgr.E01439' => 'egr', 'Eucgr.G02859' => 'egr', 'FAN01G0168' => 'fan', 'FAN01G0453' => 'fan', 'FAN01G2761' => 'fan', 'FAN02G1239' => 'fan', 'FAN03G0645' => 'fan', 'FAN03G2707' => 'fan', 'FAN03G2978' => 'fan', 'FAN04G0227' => 'fan', 'FAN06G0091' => 'fan', 'FAN06G1418' => 'fan', 'FAN06G1512' => 'fan', 'FAN06G1986' => 'fan', 'FAN06G2905' => 'fan', 'FAN06G4325' => 'fan', 'FAN08G0033' => 'fan', 'FAN09G0642' => 'fan', 'FAN10G1763' => 'fan', 'FAN10G2026' => 'fan', 'FAN10G2513' => 'fan', 'FAN10G3402' => 'fan', 'FAN10G3564' => 'fan', 'FAN10G3987' => 'fan', 'FAN13G1490' => 'fan', 'FAN14G5857' => 'fan', 'FAN18G1188' => 'fan', 'FvH4_5g00750' => 'fve', 'FvH4_6g13410' => 'fve', 'FvH4_7g11740' => 'fve', 'FvH4_7g17410' => 'fve', 'FvH4_7g18860' => 'fve', 'Glyma.01G099100' => 'gma', 'Glyma.01G142300' => 'gma', 'Glyma.03G025500' => 'gma', 'Glyma.03G069700' => 'gma', 'Glyma.03G260000' => 'gma', 'Glyma.09G269800' => 'gma', 'Glyma.10G208700' => 'gma', 'Glyma.18G220400' => 'gma', 'Glyma.20G182000' => 'gma', 'Gohir.A01G221726' => 'ghi', 'Gohir.A07G134600' => 'ghi', 'Gohir.A07G146000' => 'ghi', 'Gohir.A08G173900' => 'ghi', 'Gohir.A09G194900' => 'ghi', 'Gohir.A10G204100' => 'ghi', 'Gohir.A11G080600' => 'ghi', 'Gohir.A11G327500' => 'ghi', 'Gohir.A12G101800' => 'ghi', 'Gohir.D01G211200' => 'ghi', 'Gohir.D07G139200' => 'ghi', 'Gohir.D07G152100' => 'ghi', 'Gohir.D08G192600' => 'ghi', 'Gohir.D09G189200' => 'ghi', 'Gohir.D10G212000' => 'ghi', 'Gohir.D11G085200' => 'ghi', 'Gohir.D11G346400' => 'ghi', 'Gohir.D12G104800' => 'ghi', 'Gorai.001G151300' => 'gra', 'Gorai.001G174100' => 'gra', 'Gorai.002G257000' => 'gra', 'Gorai.004G202600' => 'gra', 'Gorai.007G090900' => 'gra', 'Gorai.007G376700' => 'gra', 'Gorai.008G114100' => 'gra', 'Gorai.011G237900' => 'gra', 'GSVIVG01005450001' => 'vvi', 'GSVIVG01016232001' => 'vvi', 'GSVIVG01026157001' => 'vvi', 'GSVIVG01027419001' => 'vvi', 'GSVIVG01027631001' => 'vvi', 'GSVIVG01034143001' => 'vvi', 'HanXRQChr03g0093921' => 'han', 'HanXRQChr04g0120001' => 'han', 'HanXRQChr04g0122561' => 'han', 'HanXRQChr09g0246851' => 'han', 'HanXRQChr10g0293311' => 'han', 'HanXRQChr13g0425231' => 'han', 'HanXRQChr16g0532571' => 'han', 'Haze_09050' => 'cav', 'Haze_15715' => 'cav', 'Haze_15716' => 'cav', 'Haze_16803' => 'cav', 'Haze_16850' => 'cav', 'Hma1.2p1_0301F.1_g118655' => 'hma', 'Hma1.2p1_0309F.1_g120590' => 'hma', 'Hma1.2p1_0936F.1_g238900' => 'hma', 'Hma1.2p1_3552F.1_g336740' => 'hma', 'HPP92_003520' => 'vpl', 'HPP92_006628' => 'vpl', 'HPP92_006645' => 'vpl', 'HPP92_014669' => 'vpl', 'HPP92_015077' => 'vpl', 'Hund16742' => 'sun', 'Hund17022' => 'sun', 'Lalb_Chr02g0152131' => 'lal', 'Lalb_Chr05g0225371' => 'lal', 'Lalb_Chr07g0189841' => 'lal', 'Lalb_Chr07g0192961' => 'lal', 'Lalb_Chr12g0208221' => 'lal', 'Lalb_Chr13g0291211' => 'lal', 'Lalb_Chr13g0291781' => 'lal', 'Lalb_Chr18g0044651' => 'lal', 'Lalb_Chr21g0313731' => 'lal', 'Lj1g0022533' => 'lja', 'Lj2A18T50' => 'lonja', 'Lj2A92G93' => 'lonja', 'Lj3A965T73' => 'lonja', 'Lj3g0000673' => 'lja', 'Lj3g0002666' => 'lja', 'Lj4g0016985' => 'lja', 'Lj5g0003625' => 'lja', 'Lj7A529G36' => 'lonja', 'Lj9A569T49' => 'lonja', 'Lj9A604T63' => 'lonja', 'Lsat_1_v5_gn_3_132060' => 'lsa', 'Lsat_1_v5_gn_4_68941' => 'lsa', 'Lsat_1_v5_gn_5_95580' => 'lsa', 'Lsat_1_v5_gn_7_161' => 'lsa', 'Lsat_1_v5_gn_7_7041' => 'lsa', 'Lsat_1_v5_gn_9_33481' => 'lsa', 'Lsat_1_v5_gn_9_68260' => 'lsa', 'Manes.01G073100' => 'mes', 'Manes.01G266300' => 'mes', 'Manes.02G033300' => 'mes', 'Manes.05G017900' => 'mes', 'Manes.05G046100' => 'mes', 'Manes.08G080900' => 'mes', 'Manes.10G049400' => 'mes', 'Mapoly0009s0186' => 'mpo', 'Mapoly0036s0118' => 'mpo', 'Mapoly0101s0046' => 'mpo', 'MBI04_g30218_MAGBIO' => 'mbi', 'MBI04_g35564_MAGBIO' => 'mbi', 'MBI12_g34011_MAGBIO' => 'mbi', 'MBI14_g04655_MAGBIO' => 'mbi', 'MCO07G653' => 'mco', 'MCO10G173' => 'mco', 'MD01G1087100' => 'mdo', 'MD01G1104200' => 'mdo', 'MD02G1205100' => 'mdo', 'MD04G1079200' => 'mdo', 'MD04G1131400' => 'mdo', 'MD07G1121600' => 'mdo', 'MD07G1157300' => 'mdo', 'MD07G1171000' => 'mdo', 'MD12G1144500' => 'mdo', 'Medtr1g094610' => 'mtr', 'Medtr4g021795' => 'mtr', 'Medtr4g023760' => 'mtr', 'Medtr7g118050' => 'mtr', 'MELO3C005582.2' => 'cme', 'MELO3C005989.2' => 'cme', 'MELO3C006192.2' => 'cme', 'MELO3C009248.2' => 'cme', 'MELO3C019817.2' => 'cme', 'Migut.B01625' => 'egut', 'Migut.B01915' => 'egut', 'Migut.F01721' => 'egut', 'Migut.J00314' => 'egut', 'MSTRG.20742' => 'ama', 'MSTRG.8134' => 'ama', 'Nitab4.5_0000096g0010' => 'nta', 'Nitab4.5_0000202g0030' => 'nta', 'Nitab4.5_0000216g0370' => 'nta', 'Nitab4.5_0000457g0230' => 'nta', 'Nitab4.5_0001702g0170' => 'nta', 'Nitab4.5_0003607g0010' => 'nta', 'Nitab4.5_0004917g0020' => 'nta', 'Nitab4.5_0007059g0010' => 'nta', 'Nitab4.5_0007184g0010' => 'nta', 'Nitab4.5_0007346g0020' => 'nta', 'Nn1g00410' => 'nnu', 'Nn1g01252' => 'nnu', 'Nn2g11168' => 'nnu', 'Nn2g13403' => 'nnu', 'Nn2g13760' => 'nnu', 'Nn4g26380' => 'nnu', 'Oeu000806.2' => 'oeu', 'Oeu005788.1' => 'oeu', 'Oeu006900.3' => 'oeu', 'Oeu007797.1' => 'oeu', 'Oeu011932.1' => 'oeu', 'Oeu022739.1' => 'oeu', 'Oeu037918.1' => 'oeu', 'Oeu055490.2' => 'oeu', 'Os01g0844400' => 'osa', 'Os02g0819100' => 'osa', 'Os03g0804300' => 'osa', 'Os05g0458000' => 'osa', 'Os07g0467800' => 'osa', 'Os12g0602200' => 'osa', 'Peaxi162Scf00013g03444' => 'pax', 'Peaxi162Scf00094g01120' => 'pax', 'Peaxi162Scf00191g01211' => 'pax', 'Peaxi162Scf00238g01110' => 'pax', 'Peaxi162Scf00330g00719' => 'pax', 'Peaxi162Scf00627g00018' => 'pax', 'PGR031G2686' => 'pgr', 'PGR042G0809' => 'pgr', 'PGR142G0193' => 'pgr', 'PGSC0003DMG400011066' => 'stu', 'PGSC0003DMG400012041' => 'stu', 'PGSC0003DMG400013678' => 'stu', 'PGSC0003DMG400023477' => 'stu', 'PGSC0003DMG400025956' => 'stu', 'PGSC0003DMG401019151' => 'stu', 'Phvul.006G116400' => 'pvu', 'Phvul.007G097300' => 'pvu', 'Phvul.010G015000' => 'pvu', 'Phvul.010G083900' => 'pvu', 'Potri.001G117100' => 'ptr', 'Potri.002G147300' => 'ptr', 'Potri.003G115600' => 'ptr', 'Potri.006G087400' => 'ptr', 'Potri.010G226100' => 'ptr', 'Potri.014G069200' => 'ptr', 'Potri.014G104000' => 'ptr', 'Potri.016G100200' => 'ptr', 'Pp3c10_20450' => 'ppa', 'Pp3c1_42400' => 'ppa', 'Pp3c3_24390' => 'ppa', 'Pp3c3_2860' => 'ppa', 'PRCOL_00003193' => 'pco', 'Prupe.2G144500' => 'ppe', 'Prupe.2G195700' => 'ppe', 'Prupe.2G209800' => 'ppe', 'Prupe.5G080000' => 'ppe', 'Prupe.6G257900' => 'ppe', 'Psat3g001160' => 'psa', 'Psat6g181880' => 'psa', 'Psat7g233720' => 'psa', 'PSO063G7587' => 'pso', 'PSO339G2145' => 'pso', 'PSO339G3369' => 'pso', 'PSO478G2747' => 'pso', 'PSO513G0140' => 'pso', 'PSO782G1614' => 'pso', 'PSO782G4889' => 'pso', 'PSO782G5485' => 'pso', 'PSO801G0241' => 'pso', 'QL07p048854' => 'qlo', 'QL08p046745' => 'qlo', 'QL08p052606' => 'qlo', 'QL08p053414' => 'qlo', 'QL08p054868' => 'qlo', 'RcHm_v2.0_Chr1g0350251' => 'rch', 'RcHm_v2.0_Chr1g0360851' => 'rch', 'RcHm_v2.0_Chr1g0362791' => 'rch', 'RcHm_v2.0_Chr3g0466281' => 'rch', 'RcHm_v2.0_Chr7g0201481' => 'rch', 'Rhsim01G0148600' => 'rsi', 'Rhsim05G0194400' => 'rsi', 'Rhsim07G0000700' => 'rsi', 'Rhsim07G0000800' => 'rsi', 'Rhsim07G0027900' => 'rsi', 'Rhsim09G0149500' => 'rsi', 'RhsimUnG0186900' => 'rsi', 'Sabra01G0089900' => 'sbr', 'Sabra02G0114700' => 'sbr', 'Sabra02G0116300' => 'sbr', 'Sabra03G0080100' => 'sbr', 'Sabra08G0024300' => 'sbr', 'Sabra10G0174300' => 'sbr', 'Sabra14G0048900' => 'sbr', 'Sabra14G0076500' => 'sbr', 'SalBow5G2513' => 'sbo', 'Sc01g0002300' => 'sci', 'Sc01g0004450' => 'sci', 'Sc06g0001680' => 'sci', 'Sc23g0003580' => 'sci', 'Sed0000913' => 'sed', 'Sed0001655' => 'sed', 'Sed0007745' => 'sed', 'Sed0010951' => 'sed', 'Sed0017599' => 'sed', 'Sed0021405' => 'sed', 'Sed0022810' => 'sed', 'SEGI_07099' => 'sgi', 'SEGI_11931' => 'sgi', 'SEGI_13187' => 'sgi', 'SEGI_29958' => 'sgi', 'SEGI_36351' => 'sgi', 'SGA_v2.0_scaffold126G33770' => 'sas', 'SGA_v2.0_scaffold153G37003' => 'sas', 'SGA_v2.0_scaffold2G01359' => 'sas', 'SGA_v2.0_scaffold5G03064' => 'sas', 'SGA_v2.0_scaffold95G28903' => 'sas', 'SHI12701' => 'shi', 'SHI26410' => 'shi', 'SHI38997' => 'shi', 'SHI53759' => 'shi', 'SHI53886' => 'shi', 'SHI54714' => 'shi', 'SMO011G0041' => 'smo', 'SMO146G0251' => 'smo', 'SMO160G0004' => 'smo', 'SMO174G0057' => 'smo', 'SMO244G0089' => 'smo', 'SMO296G0011' => 'smo', 'Solyc01g091280.3' => 'sly', 'Solyc05g047610.3' => 'sly', 'Solyc05g047640.3' => 'sly', 'Solyc05g055630.3' => 'sly', 'Solyc10g018160.2' => 'sly', 'Solyc10g084820.2' => 'sly', 'Solyc10g086565.2' => 'sly', 'Sopen01g037030' => 'spe', 'Sopen05g027920' => 'spe', 'Sopen05g034070' => 'spe', 'Sopen10g007260' => 'spe', 'Sopen10g034260' => 'spe', 'Sopen10g035950' => 'spe', 'Sp3g07710' => 'spa', 'Sp4g27420' => 'spa', 'Sp5g02450' => 'spa', 'Sp6g01280' => 'spa', 'Sp6g38480' => 'spa', 'Sp7g20780' => 'spa', 'TAR374G1413' => 'tar', 'TAR623G1777' => 'tar', 'TAR629G2370' => 'tar', 'TAR633G1759' => 'tar', 'TAR636G3387' => 'tar', 'THA.LOC104802447' => 'tha', 'THA.LOC104813916' => 'tha', 'THA.LOC104816423' => 'tha', 'THA.LOC104817246' => 'tha', 'THA.LOC104825895' => 'tha', 'Thecc.01G335200' => 'tca', 'Thecc.01G377400' => 'tca', 'Thecc.03G262200' => 'tca', 'Thecc.05G036800' => 'tca', 'Thecc.10G080500' => 'tca', 'Thecc.10G080800' => 'tca', 'Thhalv10001560m.g' => 'esa', 'Thhalv10006120m.g' => 'esa', 'Thhalv10014375m.g' => 'esa', 'Thhalv10021264m.g' => 'esa', 'Thhalv10028856m.g' => 'esa', 'TPR.G1914' => 'tpr', 'TPR.G4757' => 'tpr', 'TPR.G5595' => 'tpr', 'TWI14G0952' => 'twi', 'TWI14G1307' => 'twi', 'TWI38G2143' => 'twi', 'TWI59G0826' => 'twi', 'TWI77G0527' => 'twi', 'TWI81G0150' => 'twi', 'unitig_21.g21018' => 'ugi', 'unitig_26.g9725' => 'ugi', 'unitig_744.g24653' => 'ugi', 'unitig_749.g13778' => 'ugi', 'unitig_899.g15035' => 'ugi', 'vmacro04296' => 'vma', 'vmacro04852' => 'vma', 'vmacro13404' => 'vma', 'vmacro20169' => 'vma', 'vmacro21014' => 'vma', 'VMungo0331G0237' => 'vmu', 'VMungo0331G0706' => 'vmu', 'VMungo0331G1361' => 'vmu', 'VMungo0331G1489' => 'vmu', 'VMungo0540G1037' => 'vmu', 'VMungo0720G2487' => 'vmu', 'VMungo0720G2721' => 'vmu', 'Zm00001eb086860' => 'zma', 'Zm00001eb104760' => 'zma', 'Zm00001eb148220' => 'zma', 'Zm00001eb259030' => 'zma', 'Zm00001eb289590' => 'zma', 'Zm00001eb420150' => 'zma' ), 'gf_id' => 'HOM05D000968', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000968' ), 'data_identifier' => 'HOM05D000968', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000968', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p31690' => 'bna', 'A03p36040' => 'bna', 'A03p53730' => 'bna', 'A04p01410' => 'bna', 'A05p05420' => 'bna', 'A05p39630' => 'bna', 'A05p39640' => 'bna', 'A09p00970' => 'bna', 'A09p53060' => 'bna', 'A10p31890' => 'bna', 'Aa31LG10G15040' => 'aar', 'Aa31LG1G21090' => 'aar', 'Aa31LG1G26900' => 'aar', 'Aa31LG3G1820' => 'aar', 'Aa31LG5G1100' => 'aar', 'Aa31LG6G4740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2265' => 'aag', 'Actinidia07998' => 'ach', 'Actinidia11266' => 'ach', 'Actinidia12682' => 'ach', 'Actinidia26479' => 'ach', 'Actinidia31406' => 'ach', 'Actinidia32437' => 'ach', 'Actinidia38862' => 'ach', 'Ah.05g174230' => 'amhyb', 'Ah.05g179070' => 'amhyb', 'Ah.05g179090' => 'amhyb', 'Ah.12g059950' => 'amhyb', 'AL3G20480' => 'aly', 'AL4G44520' => 'aly', 'AL5G43110' => 'aly', 'AL6G13890' => 'aly', 'AL6G52620' => 'aly', 'AL7G30830' => 'aly', 'Aqoxy1G00899' => 'aox', 'Aqoxy5G04333' => 'aox', 'Aqoxy7G00641' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3IZ0NN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4EF6AW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W9P8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79GA3M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C43NQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFCU6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G95YVJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCHK29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LU1UG8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX91RN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGB4B1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8DA0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9H7JI' => 'arhy', 'AT3G09320' => 'ath', 'AT3G60800' => 'ath', 'AT4G00840' => 'ath', 'AT4G22750' => 'ath', 'AT5G04270' => 'ath', 'ATR0090G003' => 'atr', 'ATR0559G349' => 'atr', 'ATR0680G261' => 'atr', 'ATR0810G048' => 'atr', 'Atru.chr12.831' => 'acertr', 'Atru.chr5.303' => 'acertr', 'Atru.chr5.748' => 'acertr', 'Atru.chr8.1999' => 'acertr', 'Atru.chr9.1436' => 'acertr', 'AUR62004211' => 'cqu', 'AUR62004548' => 'cqu', 'AUR62013637' => 'cqu', 'AUR62022662' => 'cqu', 'AUR62025777' => 'cqu', 'AUR62042386' => 'cqu', 'BcaB01g02310' => 'bca', 'BcaB01g06062' => 'bca', 'BcaB02g08975' => 'bca', 'BcaB02g08980' => 'bca', 'BcaC01g04228' => 'bca', 'BcaC01g06830' => 'bca', 'BcaC02g10186' => 'bca', 'BcaC02g12214' => 'bca', 'BcaC04g24101' => 'bca', 'BcaC05g29520' => 'bca', 'BcaC05g29661' => 'bca', 'BcaC06g32130' => 'bca', 'BcaC06g32131' => 'bca', 'BcaC07g40601' => 'bca', 'BcaC07g42641' => 'bca', 'BcaNung01038' => 'bca', 'BcaNung01676' => 'bca', 'BcaNung02480' => 'bca', 'BcaNung07376' => 'bca', 'BolC3t16146H' => 'bol', 'BolC3t16637H' => 'bol', 'BolC4t22257H' => 'bol', 'BolC4t24728H' => 'bol', 'BolC5t34517H' => 'bol', 'BolC7t45703H' => 'bol', 'BolC8t51166H' => 'bol', 'BolC9t53038H' => 'bol', 'BolC9t60000H' => 'bol', 'BraA01t01345Z' => 'bra', 'BraA01t01346Z' => 'bra', 'BraA01t01348Z' => 'bra', 'BraA03t12347Z' => 'bra', 'BraA03t12775Z' => 'bra', 'BraA03t14439Z' => 'bra', 'BraA04t15860Z' => 'bra', 'BraA05t19511Z' => 'bra', 'BraA05t22746Z' => 'bra', 'BraA09t35767Z' => 'bra', 'BraA09t40732Z' => 'bra', 'BraA10t45233Z' => 'bra', 'C03p38720' => 'bna', 'C03p43680' => 'bna', 'C04p06350' => 'bna', 'C04p31800' => 'bna', 'C05p58680' => 'bna', 'C07p52110' => 'bna', 'C08p35760' => 'bna', 'C09p01050' => 'bna', 'C09p72600' => 'bna', 'CAN.G106.2' => 'can', 'CAN.G1482.1' => 'can', 'CAN.G324.12' => 'can', 'CAN.G388.20' => 'can', 'CAN.G412.7' => 'can', 'CAN.G694.32' => 'can', 'CAN.G92.12' => 'can', 'CANSAT11G2353' => 'cansat', 'CANSAT21G1398' => 'cansat', 'CANSAT56G2456' => 'cansat', 'CANSAT56G3031' => 'cansat', 'CANSAT56G4539' => 'cansat', 'CARHR083680' => 'chi', 'CARHR171190' => 'chi', 'CARHR209010' => 'chi', 'CARHR229680' => 'chi', 'CARHR249490' => 'chi', 'Carub.0003s0844' => 'cru', 'Carub.0005s2755' => 'cru', 'Carub.0006s0322' => 'cru', 'Carub.0006s3586' => 'cru', 'Carub.0007s1855' => 'cru', 'Ca_07808_v3' => 'car', 'Ca_09535_v3' => 'car', 'Ca_10548_v3' => 'car', 'Ca_19913_v3' => 'car', 'Ca_19916_v3' => 'car', 'Ca_19975_v3' => 'car', 'CBR_g22876' => 'cbr', 'CBR_g22879' => 'cbr', 'CBR_g38491' => 'cbr', 'CBR_g54185' => 'cbr', 'CBR_g54190' => 'cbr', 'Cc02_g11020' => 'ccan', 'Cc02_g23920' => 'ccan', 'Cc02_g39860' => 'ccan', 'Cc02_g39870' => 'ccan', 'Cc03_g06760' => 'ccan', 'Cc06_g02450' => 'ccan', 'Cc09_g09450' => 'ccan', 'CDE02G1959' => 'cde', 'CDE04G0600' => 'cde', 'CDE07G1996' => 'cde', 'CDE07G2078' => 'cde', 'CDE11G0611' => 'cde', 'Cfa001683' => 'cfa', 'Cfa001734' => 'cfa', 'Cfa001737' => 'cfa', 'Cfa003751' => 'cfa', 'Cfa012019' => 'cfa', 'Cfa017353' => 'cfa', 'Cfa017732' => 'cfa', 'Cfa022464' => 'cfa', 'Ciclev10012400m.g' => 'ccl', 'Ciclev10021242m.g' => 'ccl', 'Ciclev10021302m.g' => 'ccl', 'Ciclev10021463m.g' => 'ccl', 'Ciclev10032359m.g' => 'ccl', 'CiPaw.01G081000' => 'cil', 'CiPaw.01G262500' => 'cil', 'CiPaw.01G269800' => 'cil', 'CiPaw.02G168400' => 'cil', 'CiPaw.05G119500' => 'cil', 'CiPaw.11G147300' => 'cil', 'ClCG01G003630' => 'cla', 'ClCG05G000510' => 'cla', 'ClCG05G002300' => 'cla', 'ClCG08G007650' => 'cla', 'ClCG10G021250' => 'cla', 'COL.COLO4_06218' => 'col', 'COL.COLO4_12538' => 'col', 'COL.COLO4_14775' => 'col', 'COL.COLO4_23875' => 'col', 'Cpa.g.sc141.16' => 'cpa', 'Cpa.g.sc169.16' => 'cpa', 'Cpa.g.sc244.4' => 'cpa', 'Cpa.g.sc244.5' => 'cpa', 'Cpa.g.sc29.87' => 'cpa', 'Cpa.g.sc53.115' => 'cpa', 'Cre03.g207502' => 'cre', 'Cre06.g277000' => 'cre', 'Cre09.g394050' => 'cre', 'CsaV3_3G007680' => 'csa', 'CsaV3_3G009710' => 'csa', 'CsaV3_3G034790' => 'csa', 'CsaV3_5G003750' => 'csa', 'CsaV3_6G036620' => 'csa', 'CSS0002288' => 'camsi', 'CSS0011250' => 'camsi', 'CSS0021619' => 'camsi', 'CSS0046701' => 'camsi', 'DCAR_006420' => 'dca', 'DCAR_006865' => 'dca', 'DCAR_008558' => 'dca', 'DCAR_028754' => 'dca', 'DCAR_028755' => 'dca', 'Dinv31218' => 'din', 'Dinv32371' => 'din', 'Dinv34250' => 'din', 'Dinv37156' => 'din', 'Dinv43704' => 'din', 'Duzib093G1811' => 'dzi', 'Duzib106G1622' => 'dzi', 'Duzib114G0504' => 'dzi', 'Duzib128G0338' => 'dzi', 'Duzib128G1577' => 'dzi', 'Duzib133G0104' => 'dzi', 'Duzib133G1080' => 'dzi', 'Duzib138G0324' => 'dzi', 'Duzib138G0394' => 'dzi', 'Duzib205G0122' => 'dzi', 'Duzib268G1020' => 'dzi', 'Duzib268G1359' => 'dzi', 'ECA232G3929' => 'eca', 'ECA236G2210' => 'eca', 'ECA236G2287' => 'eca', 'ECA240G4568' => 'eca', 'ECA247G0894' => 'eca', 'EL10Ac1g00200' => 'bvu', 'EL10Ac1g00886' => 'bvu', 'EL10As1g23091' => 'bvu', 'EL10As1g23092' => 'bvu', 'Eucgr.A01284' => 'egr', 'Eucgr.A01285' => 'egr', 'Eucgr.D02456' => 'egr', 'Eucgr.E00018' => 'egr', 'Eucgr.E01439' => 'egr', 'Eucgr.G02859' => 'egr', 'FAN01G0168' => 'fan', 'FAN01G0453' => 'fan', 'FAN01G2761' => 'fan', 'FAN02G1239' => 'fan', 'FAN03G0645' => 'fan', 'FAN03G2707' => 'fan', 'FAN03G2978' => 'fan', 'FAN04G0227' => 'fan', 'FAN06G0091' => 'fan', 'FAN06G1418' => 'fan', 'FAN06G1512' => 'fan', 'FAN06G1986' => 'fan', 'FAN06G2905' => 'fan', 'FAN06G4325' => 'fan', 'FAN08G0033' => 'fan', 'FAN09G0642' => 'fan', 'FAN10G1763' => 'fan', 'FAN10G2026' => 'fan', 'FAN10G2513' => 'fan', 'FAN10G3402' => 'fan', 'FAN10G3564' => 'fan', 'FAN10G3987' => 'fan', 'FAN13G1490' => 'fan', 'FAN14G5857' => 'fan', 'FAN18G1188' => 'fan', 'FvH4_5g00750' => 'fve', 'FvH4_6g13410' => 'fve', 'FvH4_7g11740' => 'fve', 'FvH4_7g17410' => 'fve', 'FvH4_7g18860' => 'fve', 'Glyma.01G099100' => 'gma', 'Glyma.01G142300' => 'gma', 'Glyma.03G025500' => 'gma', 'Glyma.03G069700' => 'gma', 'Glyma.03G260000' => 'gma', 'Glyma.09G269800' => 'gma', 'Glyma.10G208700' => 'gma', 'Glyma.18G220400' => 'gma', 'Glyma.20G182000' => 'gma', 'Gohir.A01G221726' => 'ghi', 'Gohir.A07G134600' => 'ghi', 'Gohir.A07G146000' => 'ghi', 'Gohir.A08G173900' => 'ghi', 'Gohir.A09G194900' => 'ghi', 'Gohir.A10G204100' => 'ghi', 'Gohir.A11G080600' => 'ghi', 'Gohir.A11G327500' => 'ghi', 'Gohir.A12G101800' => 'ghi', 'Gohir.D01G211200' => 'ghi', 'Gohir.D07G139200' => 'ghi', 'Gohir.D07G152100' => 'ghi', 'Gohir.D08G192600' => 'ghi', 'Gohir.D09G189200' => 'ghi', 'Gohir.D10G212000' => 'ghi', 'Gohir.D11G085200' => 'ghi', 'Gohir.D11G346400' => 'ghi', 'Gohir.D12G104800' => 'ghi', 'Gorai.001G151300' => 'gra', 'Gorai.001G174100' => 'gra', 'Gorai.002G257000' => 'gra', 'Gorai.004G202600' => 'gra', 'Gorai.007G090900' => 'gra', 'Gorai.007G376700' => 'gra', 'Gorai.008G114100' => 'gra', 'Gorai.011G237900' => 'gra', 'GSVIVG01005450001' => 'vvi', 'GSVIVG01016232001' => 'vvi', 'GSVIVG01026157001' => 'vvi', 'GSVIVG01027419001' => 'vvi', 'GSVIVG01027631001' => 'vvi', 'GSVIVG01034143001' => 'vvi', 'HanXRQChr03g0093921' => 'han', 'HanXRQChr04g0120001' => 'han', 'HanXRQChr04g0122561' => 'han', 'HanXRQChr09g0246851' => 'han', 'HanXRQChr10g0293311' => 'han', 'HanXRQChr13g0425231' => 'han', 'HanXRQChr16g0532571' => 'han', 'Haze_09050' => 'cav', 'Haze_15715' => 'cav', 'Haze_15716' => 'cav', 'Haze_16803' => 'cav', 'Haze_16850' => 'cav', 'Hma1.2p1_0301F.1_g118655' => 'hma', 'Hma1.2p1_0309F.1_g120590' => 'hma', 'Hma1.2p1_0936F.1_g238900' => 'hma', 'Hma1.2p1_3552F.1_g336740' => 'hma', 'HPP92_003520' => 'vpl', 'HPP92_006628' => 'vpl', 'HPP92_006645' => 'vpl', 'HPP92_014669' => 'vpl', 'HPP92_015077' => 'vpl', 'Hund16742' => 'sun', 'Hund17022' => 'sun', 'Lalb_Chr02g0152131' => 'lal', 'Lalb_Chr05g0225371' => 'lal', 'Lalb_Chr07g0189841' => 'lal', 'Lalb_Chr07g0192961' => 'lal', 'Lalb_Chr12g0208221' => 'lal', 'Lalb_Chr13g0291211' => 'lal', 'Lalb_Chr13g0291781' => 'lal', 'Lalb_Chr18g0044651' => 'lal', 'Lalb_Chr21g0313731' => 'lal', 'Lj1g0022533' => 'lja', 'Lj2A18T50' => 'lonja', 'Lj2A92G93' => 'lonja', 'Lj3A965T73' => 'lonja', 'Lj3g0000673' => 'lja', 'Lj3g0002666' => 'lja', 'Lj4g0016985' => 'lja', 'Lj5g0003625' => 'lja', 'Lj7A529G36' => 'lonja', 'Lj9A569T49' => 'lonja', 'Lj9A604T63' => 'lonja', 'Lsat_1_v5_gn_3_132060' => 'lsa', 'Lsat_1_v5_gn_4_68941' => 'lsa', 'Lsat_1_v5_gn_5_95580' => 'lsa', 'Lsat_1_v5_gn_7_161' => 'lsa', 'Lsat_1_v5_gn_7_7041' => 'lsa', 'Lsat_1_v5_gn_9_33481' => 'lsa', 'Lsat_1_v5_gn_9_68260' => 'lsa', 'Manes.01G073100' => 'mes', 'Manes.01G266300' => 'mes', 'Manes.02G033300' => 'mes', 'Manes.05G017900' => 'mes', 'Manes.05G046100' => 'mes', 'Manes.08G080900' => 'mes', 'Manes.10G049400' => 'mes', 'Mapoly0009s0186' => 'mpo', 'Mapoly0036s0118' => 'mpo', 'Mapoly0101s0046' => 'mpo', 'MBI04_g30218_MAGBIO' => 'mbi', 'MBI04_g35564_MAGBIO' => 'mbi', 'MBI12_g34011_MAGBIO' => 'mbi', 'MBI14_g04655_MAGBIO' => 'mbi', 'MCO07G653' => 'mco', 'MCO10G173' => 'mco', 'MD01G1087100' => 'mdo', 'MD01G1104200' => 'mdo', 'MD02G1205100' => 'mdo', 'MD04G1079200' => 'mdo', 'MD04G1131400' => 'mdo', 'MD07G1121600' => 'mdo', 'MD07G1157300' => 'mdo', 'MD07G1171000' => 'mdo', 'MD12G1144500' => 'mdo', 'Medtr1g094610' => 'mtr', 'Medtr4g021795' => 'mtr', 'Medtr4g023760' => 'mtr', 'Medtr7g118050' => 'mtr', 'MELO3C005582.2' => 'cme', 'MELO3C005989.2' => 'cme', 'MELO3C006192.2' => 'cme', 'MELO3C009248.2' => 'cme', 'MELO3C019817.2' => 'cme', 'Migut.B01625' => 'egut', 'Migut.B01915' => 'egut', 'Migut.F01721' => 'egut', 'Migut.J00314' => 'egut', 'MSTRG.20742' => 'ama', 'MSTRG.8134' => 'ama', 'Nitab4.5_0000096g0010' => 'nta', 'Nitab4.5_0000202g0030' => 'nta', 'Nitab4.5_0000216g0370' => 'nta', 'Nitab4.5_0000457g0230' => 'nta', 'Nitab4.5_0001702g0170' => 'nta', 'Nitab4.5_0003607g0010' => 'nta', 'Nitab4.5_0004917g0020' => 'nta', 'Nitab4.5_0007059g0010' => 'nta', 'Nitab4.5_0007184g0010' => 'nta', 'Nitab4.5_0007346g0020' => 'nta', 'Nn1g00410' => 'nnu', 'Nn1g01252' => 'nnu', 'Nn2g11168' => 'nnu', 'Nn2g13403' => 'nnu', 'Nn2g13760' => 'nnu', 'Nn4g26380' => 'nnu', 'Oeu000806.2' => 'oeu', 'Oeu005788.1' => 'oeu', 'Oeu006900.3' => 'oeu', 'Oeu007797.1' => 'oeu', 'Oeu011932.1' => 'oeu', 'Oeu022739.1' => 'oeu', 'Oeu037918.1' => 'oeu', 'Oeu055490.2' => 'oeu', 'Os01g0844400' => 'osa', 'Os02g0819100' => 'osa', 'Os03g0804300' => 'osa', 'Os05g0458000' => 'osa', 'Os07g0467800' => 'osa', 'Os12g0602200' => 'osa', 'Peaxi162Scf00013g03444' => 'pax', 'Peaxi162Scf00094g01120' => 'pax', 'Peaxi162Scf00191g01211' => 'pax', 'Peaxi162Scf00238g01110' => 'pax', 'Peaxi162Scf00330g00719' => 'pax', 'Peaxi162Scf00627g00018' => 'pax', 'PGR031G2686' => 'pgr', 'PGR042G0809' => 'pgr', 'PGR142G0193' => 'pgr', 'PGSC0003DMG400011066' => 'stu', 'PGSC0003DMG400012041' => 'stu', 'PGSC0003DMG400013678' => 'stu', 'PGSC0003DMG400023477' => 'stu', 'PGSC0003DMG400025956' => 'stu', 'PGSC0003DMG401019151' => 'stu', 'Phvul.006G116400' => 'pvu', 'Phvul.007G097300' => 'pvu', 'Phvul.010G015000' => 'pvu', 'Phvul.010G083900' => 'pvu', 'Potri.001G117100' => 'ptr', 'Potri.002G147300' => 'ptr', 'Potri.003G115600' => 'ptr', 'Potri.006G087400' => 'ptr', 'Potri.010G226100' => 'ptr', 'Potri.014G069200' => 'ptr', 'Potri.014G104000' => 'ptr', 'Potri.016G100200' => 'ptr', 'Pp3c10_20450' => 'ppa', 'Pp3c1_42400' => 'ppa', 'Pp3c3_24390' => 'ppa', 'Pp3c3_2860' => 'ppa', 'PRCOL_00003193' => 'pco', 'Prupe.2G144500' => 'ppe', 'Prupe.2G195700' => 'ppe', 'Prupe.2G209800' => 'ppe', 'Prupe.5G080000' => 'ppe', 'Prupe.6G257900' => 'ppe', 'Psat3g001160' => 'psa', 'Psat6g181880' => 'psa', 'Psat7g233720' => 'psa', 'PSO063G7587' => 'pso', 'PSO339G2145' => 'pso', 'PSO339G3369' => 'pso', 'PSO478G2747' => 'pso', 'PSO513G0140' => 'pso', 'PSO782G1614' => 'pso', 'PSO782G4889' => 'pso', 'PSO782G5485' => 'pso', 'PSO801G0241' => 'pso', 'QL07p048854' => 'qlo', 'QL08p046745' => 'qlo', 'QL08p052606' => 'qlo', 'QL08p053414' => 'qlo', 'QL08p054868' => 'qlo', 'RcHm_v2.0_Chr1g0350251' => 'rch', 'RcHm_v2.0_Chr1g0360851' => 'rch', 'RcHm_v2.0_Chr1g0362791' => 'rch', 'RcHm_v2.0_Chr3g0466281' => 'rch', 'RcHm_v2.0_Chr7g0201481' => 'rch', 'Rhsim01G0148600' => 'rsi', 'Rhsim05G0194400' => 'rsi', 'Rhsim07G0000700' => 'rsi', 'Rhsim07G0000800' => 'rsi', 'Rhsim07G0027900' => 'rsi', 'Rhsim09G0149500' => 'rsi', 'RhsimUnG0186900' => 'rsi', 'Sabra01G0089900' => 'sbr', 'Sabra02G0114700' => 'sbr', 'Sabra02G0116300' => 'sbr', 'Sabra03G0080100' => 'sbr', 'Sabra08G0024300' => 'sbr', 'Sabra10G0174300' => 'sbr', 'Sabra14G0048900' => 'sbr', 'Sabra14G0076500' => 'sbr', 'SalBow5G2513' => 'sbo', 'Sc01g0002300' => 'sci', 'Sc01g0004450' => 'sci', 'Sc06g0001680' => 'sci', 'Sc23g0003580' => 'sci', 'Sed0000913' => 'sed', 'Sed0001655' => 'sed', 'Sed0007745' => 'sed', 'Sed0010951' => 'sed', 'Sed0017599' => 'sed', 'Sed0021405' => 'sed', 'Sed0022810' => 'sed', 'SEGI_07099' => 'sgi', 'SEGI_11931' => 'sgi', 'SEGI_13187' => 'sgi', 'SEGI_29958' => 'sgi', 'SEGI_36351' => 'sgi', 'SGA_v2.0_scaffold126G33770' => 'sas', 'SGA_v2.0_scaffold153G37003' => 'sas', 'SGA_v2.0_scaffold2G01359' => 'sas', 'SGA_v2.0_scaffold5G03064' => 'sas', 'SGA_v2.0_scaffold95G28903' => 'sas', 'SHI12701' => 'shi', 'SHI26410' => 'shi', 'SHI38997' => 'shi', 'SHI53759' => 'shi', 'SHI53886' => 'shi', 'SHI54714' => 'shi', 'SMO011G0041' => 'smo', 'SMO146G0251' => 'smo', 'SMO160G0004' => 'smo', 'SMO174G0057' => 'smo', 'SMO244G0089' => 'smo', 'SMO296G0011' => 'smo', 'Solyc01g091280.3' => 'sly', 'Solyc05g047610.3' => 'sly', 'Solyc05g047640.3' => 'sly', 'Solyc05g055630.3' => 'sly', 'Solyc10g018160.2' => 'sly', 'Solyc10g084820.2' => 'sly', 'Solyc10g086565.2' => 'sly', 'Sopen01g037030' => 'spe', 'Sopen05g027920' => 'spe', 'Sopen05g034070' => 'spe', 'Sopen10g007260' => 'spe', 'Sopen10g034260' => 'spe', 'Sopen10g035950' => 'spe', 'Sp3g07710' => 'spa', 'Sp4g27420' => 'spa', 'Sp5g02450' => 'spa', 'Sp6g01280' => 'spa', 'Sp6g38480' => 'spa', 'Sp7g20780' => 'spa', 'TAR374G1413' => 'tar', 'TAR623G1777' => 'tar', 'TAR629G2370' => 'tar', 'TAR633G1759' => 'tar', 'TAR636G3387' => 'tar', 'THA.LOC104802447' => 'tha', 'THA.LOC104813916' => 'tha', 'THA.LOC104816423' => 'tha', 'THA.LOC104817246' => 'tha', 'THA.LOC104825895' => 'tha', 'Thecc.01G335200' => 'tca', 'Thecc.01G377400' => 'tca', 'Thecc.03G262200' => 'tca', 'Thecc.05G036800' => 'tca', 'Thecc.10G080500' => 'tca', 'Thecc.10G080800' => 'tca', 'Thhalv10001560m.g' => 'esa', 'Thhalv10006120m.g' => 'esa', 'Thhalv10014375m.g' => 'esa', 'Thhalv10021264m.g' => 'esa', 'Thhalv10028856m.g' => 'esa', 'TPR.G1914' => 'tpr', 'TPR.G4757' => 'tpr', 'TPR.G5595' => 'tpr', 'TWI14G0952' => 'twi', 'TWI14G1307' => 'twi', 'TWI38G2143' => 'twi', 'TWI59G0826' => 'twi', 'TWI77G0527' => 'twi', 'TWI81G0150' => 'twi', 'unitig_21.g21018' => 'ugi', 'unitig_26.g9725' => 'ugi', 'unitig_744.g24653' => 'ugi', 'unitig_749.g13778' => 'ugi', 'unitig_899.g15035' => 'ugi', 'vmacro04296' => 'vma', 'vmacro04852' => 'vma', 'vmacro13404' => 'vma', 'vmacro20169' => 'vma', 'vmacro21014' => 'vma', 'VMungo0331G0237' => 'vmu', 'VMungo0331G0706' => 'vmu', 'VMungo0331G1361' => 'vmu', 'VMungo0331G1489' => 'vmu', 'VMungo0540G1037' => 'vmu', 'VMungo0720G2487' => 'vmu', 'VMungo0720G2721' => 'vmu', 'Zm00001eb086860' => 'zma', 'Zm00001eb104760' => 'zma', 'Zm00001eb148220' => 'zma', 'Zm00001eb259030' => 'zma', 'Zm00001eb289590' => 'zma', 'Zm00001eb420150' => 'zma' ) $gf_id = 'HOM05D000968' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000968' ) $data_identifier = 'HOM05D000968' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 19, 'bol' => (int) 9, 'bra' => (int) 12, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 5, 'ccan' => (int) 7, 'cde' => (int) 5, 'cfa' => (int) 8, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 4, 'dca' => (int) 5, 'din' => (int) 5, 'dzi' => (int) 12, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 25, 'fve' => (int) 5, 'gma' => (int) 9, 'ghi' => (int) 18, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 7, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 5, 'sun' => (int) 2, 'lal' => (int) 9, 'lja' => (int) 5, 'lonja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 9, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 2, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 3, 'stu' => (int) 6, 'pvu' => (int) 4, 'ptr' => (int) 8, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 3, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 1, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 5, 'sas' => (int) 5, 'shi' => (int) 6, 'smo' => (int) 6, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 3, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420150' $species_info = array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ) $local_species = 'din' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000968', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p31690' => 'bna', 'A03p36040' => 'bna', 'A03p53730' => 'bna', 'A04p01410' => 'bna', 'A05p05420' => 'bna', 'A05p39630' => 'bna', 'A05p39640' => 'bna', 'A09p00970' => 'bna', 'A09p53060' => 'bna', 'A10p31890' => 'bna', 'Aa31LG10G15040' => 'aar', 'Aa31LG1G21090' => 'aar', 'Aa31LG1G26900' => 'aar', 'Aa31LG3G1820' => 'aar', 'Aa31LG5G1100' => 'aar', 'Aa31LG6G4740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2265' => 'aag', 'Actinidia07998' => 'ach', 'Actinidia11266' => 'ach', 'Actinidia12682' => 'ach', 'Actinidia26479' => 'ach', 'Actinidia31406' => 'ach', 'Actinidia32437' => 'ach', 'Actinidia38862' => 'ach', 'Ah.05g174230' => 'amhyb', 'Ah.05g179070' => 'amhyb', 'Ah.05g179090' => 'amhyb', 'Ah.12g059950' => 'amhyb', 'AL3G20480' => 'aly', 'AL4G44520' => 'aly', 'AL5G43110' => 'aly', 'AL6G13890' => 'aly', 'AL6G52620' => 'aly', 'AL7G30830' => 'aly', 'Aqoxy1G00899' => 'aox', 'Aqoxy5G04333' => 'aox', 'Aqoxy7G00641' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3IZ0NN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4EF6AW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W9P8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79GA3M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C43NQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFCU6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G95YVJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCHK29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LU1UG8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX91RN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGB4B1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8DA0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9H7JI' => 'arhy', 'AT3G09320' => 'ath', 'AT3G60800' => 'ath', 'AT4G00840' => 'ath', 'AT4G22750' => 'ath', 'AT5G04270' => 'ath', 'ATR0090G003' => 'atr', 'ATR0559G349' => 'atr', 'ATR0680G261' => 'atr', 'ATR0810G048' => 'atr', 'Atru.chr12.831' => 'acertr', 'Atru.chr5.303' => 'acertr', 'Atru.chr5.748' => 'acertr', 'Atru.chr8.1999' => 'acertr', 'Atru.chr9.1436' => 'acertr', 'AUR62004211' => 'cqu', 'AUR62004548' => 'cqu', 'AUR62013637' => 'cqu', 'AUR62022662' => 'cqu', 'AUR62025777' => 'cqu', 'AUR62042386' => 'cqu', 'BcaB01g02310' => 'bca', 'BcaB01g06062' => 'bca', 'BcaB02g08975' => 'bca', 'BcaB02g08980' => 'bca', 'BcaC01g04228' => 'bca', 'BcaC01g06830' => 'bca', 'BcaC02g10186' => 'bca', 'BcaC02g12214' => 'bca', 'BcaC04g24101' => 'bca', 'BcaC05g29520' => 'bca', 'BcaC05g29661' => 'bca', 'BcaC06g32130' => 'bca', 'BcaC06g32131' => 'bca', 'BcaC07g40601' => 'bca', 'BcaC07g42641' => 'bca', 'BcaNung01038' => 'bca', 'BcaNung01676' => 'bca', 'BcaNung02480' => 'bca', 'BcaNung07376' => 'bca', 'BolC3t16146H' => 'bol', 'BolC3t16637H' => 'bol', 'BolC4t22257H' => 'bol', 'BolC4t24728H' => 'bol', 'BolC5t34517H' => 'bol', 'BolC7t45703H' => 'bol', 'BolC8t51166H' => 'bol', 'BolC9t53038H' => 'bol', 'BolC9t60000H' => 'bol', 'BraA01t01345Z' => 'bra', 'BraA01t01346Z' => 'bra', 'BraA01t01348Z' => 'bra', 'BraA03t12347Z' => 'bra', 'BraA03t12775Z' => 'bra', 'BraA03t14439Z' => 'bra', 'BraA04t15860Z' => 'bra', 'BraA05t19511Z' => 'bra', 'BraA05t22746Z' => 'bra', 'BraA09t35767Z' => 'bra', 'BraA09t40732Z' => 'bra', 'BraA10t45233Z' => 'bra', 'C03p38720' => 'bna', 'C03p43680' => 'bna', 'C04p06350' => 'bna', 'C04p31800' => 'bna', 'C05p58680' => 'bna', 'C07p52110' => 'bna', 'C08p35760' => 'bna', 'C09p01050' => 'bna', 'C09p72600' => 'bna', 'CAN.G106.2' => 'can', 'CAN.G1482.1' => 'can', 'CAN.G324.12' => 'can', 'CAN.G388.20' => 'can', 'CAN.G412.7' => 'can', 'CAN.G694.32' => 'can', 'CAN.G92.12' => 'can', 'CANSAT11G2353' => 'cansat', 'CANSAT21G1398' => 'cansat', 'CANSAT56G2456' => 'cansat', 'CANSAT56G3031' => 'cansat', 'CANSAT56G4539' => 'cansat', 'CARHR083680' => 'chi', 'CARHR171190' => 'chi', 'CARHR209010' => 'chi', 'CARHR229680' => 'chi', 'CARHR249490' => 'chi', 'Carub.0003s0844' => 'cru', 'Carub.0005s2755' => 'cru', 'Carub.0006s0322' => 'cru', 'Carub.0006s3586' => 'cru', 'Carub.0007s1855' => 'cru', 'Ca_07808_v3' => 'car', 'Ca_09535_v3' => 'car', 'Ca_10548_v3' => 'car', 'Ca_19913_v3' => 'car', 'Ca_19916_v3' => 'car', 'Ca_19975_v3' => 'car', 'CBR_g22876' => 'cbr', 'CBR_g22879' => 'cbr', 'CBR_g38491' => 'cbr', 'CBR_g54185' => 'cbr', 'CBR_g54190' => 'cbr', 'Cc02_g11020' => 'ccan', 'Cc02_g23920' => 'ccan', 'Cc02_g39860' => 'ccan', 'Cc02_g39870' => 'ccan', 'Cc03_g06760' => 'ccan', 'Cc06_g02450' => 'ccan', 'Cc09_g09450' => 'ccan', 'CDE02G1959' => 'cde', 'CDE04G0600' => 'cde', 'CDE07G1996' => 'cde', 'CDE07G2078' => 'cde', 'CDE11G0611' => 'cde', 'Cfa001683' => 'cfa', 'Cfa001734' => 'cfa', 'Cfa001737' => 'cfa', 'Cfa003751' => 'cfa', 'Cfa012019' => 'cfa', 'Cfa017353' => 'cfa', 'Cfa017732' => 'cfa', 'Cfa022464' => 'cfa', 'Ciclev10012400m.g' => 'ccl', 'Ciclev10021242m.g' => 'ccl', 'Ciclev10021302m.g' => 'ccl', 'Ciclev10021463m.g' => 'ccl', 'Ciclev10032359m.g' => 'ccl', 'CiPaw.01G081000' => 'cil', 'CiPaw.01G262500' => 'cil', 'CiPaw.01G269800' => 'cil', 'CiPaw.02G168400' => 'cil', 'CiPaw.05G119500' => 'cil', 'CiPaw.11G147300' => 'cil', 'ClCG01G003630' => 'cla', 'ClCG05G000510' => 'cla', 'ClCG05G002300' => 'cla', 'ClCG08G007650' => 'cla', 'ClCG10G021250' => 'cla', 'COL.COLO4_06218' => 'col', 'COL.COLO4_12538' => 'col', 'COL.COLO4_14775' => 'col', 'COL.COLO4_23875' => 'col', 'Cpa.g.sc141.16' => 'cpa', 'Cpa.g.sc169.16' => 'cpa', 'Cpa.g.sc244.4' => 'cpa', 'Cpa.g.sc244.5' => 'cpa', 'Cpa.g.sc29.87' => 'cpa', 'Cpa.g.sc53.115' => 'cpa', 'Cre03.g207502' => 'cre', 'Cre06.g277000' => 'cre', 'Cre09.g394050' => 'cre', 'CsaV3_3G007680' => 'csa', 'CsaV3_3G009710' => 'csa', 'CsaV3_3G034790' => 'csa', 'CsaV3_5G003750' => 'csa', 'CsaV3_6G036620' => 'csa', 'CSS0002288' => 'camsi', 'CSS0011250' => 'camsi', 'CSS0021619' => 'camsi', 'CSS0046701' => 'camsi', 'DCAR_006420' => 'dca', 'DCAR_006865' => 'dca', 'DCAR_008558' => 'dca', 'DCAR_028754' => 'dca', 'DCAR_028755' => 'dca', 'Dinv31218' => 'din', 'Dinv32371' => 'din', 'Dinv34250' => 'din', 'Dinv37156' => 'din', 'Dinv43704' => 'din', 'Duzib093G1811' => 'dzi', 'Duzib106G1622' => 'dzi', 'Duzib114G0504' => 'dzi', 'Duzib128G0338' => 'dzi', 'Duzib128G1577' => 'dzi', 'Duzib133G0104' => 'dzi', 'Duzib133G1080' => 'dzi', 'Duzib138G0324' => 'dzi', 'Duzib138G0394' => 'dzi', 'Duzib205G0122' => 'dzi', 'Duzib268G1020' => 'dzi', 'Duzib268G1359' => 'dzi', 'ECA232G3929' => 'eca', 'ECA236G2210' => 'eca', 'ECA236G2287' => 'eca', 'ECA240G4568' => 'eca', 'ECA247G0894' => 'eca', 'EL10Ac1g00200' => 'bvu', 'EL10Ac1g00886' => 'bvu', 'EL10As1g23091' => 'bvu', 'EL10As1g23092' => 'bvu', 'Eucgr.A01284' => 'egr', 'Eucgr.A01285' => 'egr', 'Eucgr.D02456' => 'egr', 'Eucgr.E00018' => 'egr', 'Eucgr.E01439' => 'egr', 'Eucgr.G02859' => 'egr', 'FAN01G0168' => 'fan', 'FAN01G0453' => 'fan', 'FAN01G2761' => 'fan', 'FAN02G1239' => 'fan', 'FAN03G0645' => 'fan', 'FAN03G2707' => 'fan', 'FAN03G2978' => 'fan', 'FAN04G0227' => 'fan', 'FAN06G0091' => 'fan', 'FAN06G1418' => 'fan', 'FAN06G1512' => 'fan', 'FAN06G1986' => 'fan', 'FAN06G2905' => 'fan', 'FAN06G4325' => 'fan', 'FAN08G0033' => 'fan', 'FAN09G0642' => 'fan', 'FAN10G1763' => 'fan', 'FAN10G2026' => 'fan', 'FAN10G2513' => 'fan', 'FAN10G3402' => 'fan', 'FAN10G3564' => 'fan', 'FAN10G3987' => 'fan', 'FAN13G1490' => 'fan', 'FAN14G5857' => 'fan', 'FAN18G1188' => 'fan', 'FvH4_5g00750' => 'fve', 'FvH4_6g13410' => 'fve', 'FvH4_7g11740' => 'fve', 'FvH4_7g17410' => 'fve', 'FvH4_7g18860' => 'fve', 'Glyma.01G099100' => 'gma', 'Glyma.01G142300' => 'gma', 'Glyma.03G025500' => 'gma', 'Glyma.03G069700' => 'gma', 'Glyma.03G260000' => 'gma', 'Glyma.09G269800' => 'gma', 'Glyma.10G208700' => 'gma', 'Glyma.18G220400' => 'gma', 'Glyma.20G182000' => 'gma', 'Gohir.A01G221726' => 'ghi', 'Gohir.A07G134600' => 'ghi', 'Gohir.A07G146000' => 'ghi', 'Gohir.A08G173900' => 'ghi', 'Gohir.A09G194900' => 'ghi', 'Gohir.A10G204100' => 'ghi', 'Gohir.A11G080600' => 'ghi', 'Gohir.A11G327500' => 'ghi', 'Gohir.A12G101800' => 'ghi', 'Gohir.D01G211200' => 'ghi', 'Gohir.D07G139200' => 'ghi', 'Gohir.D07G152100' => 'ghi', 'Gohir.D08G192600' => 'ghi', 'Gohir.D09G189200' => 'ghi', 'Gohir.D10G212000' => 'ghi', 'Gohir.D11G085200' => 'ghi', 'Gohir.D11G346400' => 'ghi', 'Gohir.D12G104800' => 'ghi', 'Gorai.001G151300' => 'gra', 'Gorai.001G174100' => 'gra', 'Gorai.002G257000' => 'gra', 'Gorai.004G202600' => 'gra', 'Gorai.007G090900' => 'gra', 'Gorai.007G376700' => 'gra', 'Gorai.008G114100' => 'gra', 'Gorai.011G237900' => 'gra', 'GSVIVG01005450001' => 'vvi', 'GSVIVG01016232001' => 'vvi', 'GSVIVG01026157001' => 'vvi', 'GSVIVG01027419001' => 'vvi', 'GSVIVG01027631001' => 'vvi', 'GSVIVG01034143001' => 'vvi', 'HanXRQChr03g0093921' => 'han', 'HanXRQChr04g0120001' => 'han', 'HanXRQChr04g0122561' => 'han', 'HanXRQChr09g0246851' => 'han', 'HanXRQChr10g0293311' => 'han', 'HanXRQChr13g0425231' => 'han', 'HanXRQChr16g0532571' => 'han', 'Haze_09050' => 'cav', 'Haze_15715' => 'cav', 'Haze_15716' => 'cav', 'Haze_16803' => 'cav', 'Haze_16850' => 'cav', 'Hma1.2p1_0301F.1_g118655' => 'hma', 'Hma1.2p1_0309F.1_g120590' => 'hma', 'Hma1.2p1_0936F.1_g238900' => 'hma', 'Hma1.2p1_3552F.1_g336740' => 'hma', 'HPP92_003520' => 'vpl', 'HPP92_006628' => 'vpl', 'HPP92_006645' => 'vpl', 'HPP92_014669' => 'vpl', 'HPP92_015077' => 'vpl', 'Hund16742' => 'sun', 'Hund17022' => 'sun', 'Lalb_Chr02g0152131' => 'lal', 'Lalb_Chr05g0225371' => 'lal', 'Lalb_Chr07g0189841' => 'lal', 'Lalb_Chr07g0192961' => 'lal', 'Lalb_Chr12g0208221' => 'lal', 'Lalb_Chr13g0291211' => 'lal', 'Lalb_Chr13g0291781' => 'lal', 'Lalb_Chr18g0044651' => 'lal', 'Lalb_Chr21g0313731' => 'lal', 'Lj1g0022533' => 'lja', 'Lj2A18T50' => 'lonja', 'Lj2A92G93' => 'lonja', 'Lj3A965T73' => 'lonja', 'Lj3g0000673' => 'lja', 'Lj3g0002666' => 'lja', 'Lj4g0016985' => 'lja', 'Lj5g0003625' => 'lja', 'Lj7A529G36' => 'lonja', 'Lj9A569T49' => 'lonja', 'Lj9A604T63' => 'lonja', 'Lsat_1_v5_gn_3_132060' => 'lsa', 'Lsat_1_v5_gn_4_68941' => 'lsa', 'Lsat_1_v5_gn_5_95580' => 'lsa', 'Lsat_1_v5_gn_7_161' => 'lsa', 'Lsat_1_v5_gn_7_7041' => 'lsa', 'Lsat_1_v5_gn_9_33481' => 'lsa', 'Lsat_1_v5_gn_9_68260' => 'lsa', 'Manes.01G073100' => 'mes', 'Manes.01G266300' => 'mes', 'Manes.02G033300' => 'mes', 'Manes.05G017900' => 'mes', 'Manes.05G046100' => 'mes', 'Manes.08G080900' => 'mes', 'Manes.10G049400' => 'mes', 'Mapoly0009s0186' => 'mpo', 'Mapoly0036s0118' => 'mpo', 'Mapoly0101s0046' => 'mpo', 'MBI04_g30218_MAGBIO' => 'mbi', 'MBI04_g35564_MAGBIO' => 'mbi', 'MBI12_g34011_MAGBIO' => 'mbi', 'MBI14_g04655_MAGBIO' => 'mbi', 'MCO07G653' => 'mco', 'MCO10G173' => 'mco', 'MD01G1087100' => 'mdo', 'MD01G1104200' => 'mdo', 'MD02G1205100' => 'mdo', 'MD04G1079200' => 'mdo', 'MD04G1131400' => 'mdo', 'MD07G1121600' => 'mdo', 'MD07G1157300' => 'mdo', 'MD07G1171000' => 'mdo', 'MD12G1144500' => 'mdo', 'Medtr1g094610' => 'mtr', 'Medtr4g021795' => 'mtr', 'Medtr4g023760' => 'mtr', 'Medtr7g118050' => 'mtr', 'MELO3C005582.2' => 'cme', 'MELO3C005989.2' => 'cme', 'MELO3C006192.2' => 'cme', 'MELO3C009248.2' => 'cme', 'MELO3C019817.2' => 'cme', 'Migut.B01625' => 'egut', 'Migut.B01915' => 'egut', 'Migut.F01721' => 'egut', 'Migut.J00314' => 'egut', 'MSTRG.20742' => 'ama', 'MSTRG.8134' => 'ama', 'Nitab4.5_0000096g0010' => 'nta', 'Nitab4.5_0000202g0030' => 'nta', 'Nitab4.5_0000216g0370' => 'nta', 'Nitab4.5_0000457g0230' => 'nta', 'Nitab4.5_0001702g0170' => 'nta', 'Nitab4.5_0003607g0010' => 'nta', 'Nitab4.5_0004917g0020' => 'nta', 'Nitab4.5_0007059g0010' => 'nta', 'Nitab4.5_0007184g0010' => 'nta', 'Nitab4.5_0007346g0020' => 'nta', 'Nn1g00410' => 'nnu', 'Nn1g01252' => 'nnu', 'Nn2g11168' => 'nnu', 'Nn2g13403' => 'nnu', 'Nn2g13760' => 'nnu', 'Nn4g26380' => 'nnu', 'Oeu000806.2' => 'oeu', 'Oeu005788.1' => 'oeu', 'Oeu006900.3' => 'oeu', 'Oeu007797.1' => 'oeu', 'Oeu011932.1' => 'oeu', 'Oeu022739.1' => 'oeu', 'Oeu037918.1' => 'oeu', 'Oeu055490.2' => 'oeu', 'Os01g0844400' => 'osa', 'Os02g0819100' => 'osa', 'Os03g0804300' => 'osa', 'Os05g0458000' => 'osa', 'Os07g0467800' => 'osa', 'Os12g0602200' => 'osa', 'Peaxi162Scf00013g03444' => 'pax', 'Peaxi162Scf00094g01120' => 'pax', 'Peaxi162Scf00191g01211' => 'pax', 'Peaxi162Scf00238g01110' => 'pax', 'Peaxi162Scf00330g00719' => 'pax', 'Peaxi162Scf00627g00018' => 'pax', 'PGR031G2686' => 'pgr', 'PGR042G0809' => 'pgr', 'PGR142G0193' => 'pgr', 'PGSC0003DMG400011066' => 'stu', 'PGSC0003DMG400012041' => 'stu', 'PGSC0003DMG400013678' => 'stu', 'PGSC0003DMG400023477' => 'stu', 'PGSC0003DMG400025956' => 'stu', 'PGSC0003DMG401019151' => 'stu', 'Phvul.006G116400' => 'pvu', 'Phvul.007G097300' => 'pvu', 'Phvul.010G015000' => 'pvu', 'Phvul.010G083900' => 'pvu', 'Potri.001G117100' => 'ptr', 'Potri.002G147300' => 'ptr', 'Potri.003G115600' => 'ptr', 'Potri.006G087400' => 'ptr', 'Potri.010G226100' => 'ptr', 'Potri.014G069200' => 'ptr', 'Potri.014G104000' => 'ptr', 'Potri.016G100200' => 'ptr', 'Pp3c10_20450' => 'ppa', 'Pp3c1_42400' => 'ppa', 'Pp3c3_24390' => 'ppa', 'Pp3c3_2860' => 'ppa', 'PRCOL_00003193' => 'pco', 'Prupe.2G144500' => 'ppe', 'Prupe.2G195700' => 'ppe', 'Prupe.2G209800' => 'ppe', 'Prupe.5G080000' => 'ppe', 'Prupe.6G257900' => 'ppe', 'Psat3g001160' => 'psa', 'Psat6g181880' => 'psa', 'Psat7g233720' => 'psa', 'PSO063G7587' => 'pso', 'PSO339G2145' => 'pso', 'PSO339G3369' => 'pso', 'PSO478G2747' => 'pso', 'PSO513G0140' => 'pso', 'PSO782G1614' => 'pso', 'PSO782G4889' => 'pso', 'PSO782G5485' => 'pso', 'PSO801G0241' => 'pso', 'QL07p048854' => 'qlo', 'QL08p046745' => 'qlo', 'QL08p052606' => 'qlo', 'QL08p053414' => 'qlo', 'QL08p054868' => 'qlo', 'RcHm_v2.0_Chr1g0350251' => 'rch', 'RcHm_v2.0_Chr1g0360851' => 'rch', 'RcHm_v2.0_Chr1g0362791' => 'rch', 'RcHm_v2.0_Chr3g0466281' => 'rch', 'RcHm_v2.0_Chr7g0201481' => 'rch', 'Rhsim01G0148600' => 'rsi', 'Rhsim05G0194400' => 'rsi', 'Rhsim07G0000700' => 'rsi', 'Rhsim07G0000800' => 'rsi', 'Rhsim07G0027900' => 'rsi', 'Rhsim09G0149500' => 'rsi', 'RhsimUnG0186900' => 'rsi', 'Sabra01G0089900' => 'sbr', 'Sabra02G0114700' => 'sbr', 'Sabra02G0116300' => 'sbr', 'Sabra03G0080100' => 'sbr', 'Sabra08G0024300' => 'sbr', 'Sabra10G0174300' => 'sbr', 'Sabra14G0048900' => 'sbr', 'Sabra14G0076500' => 'sbr', 'SalBow5G2513' => 'sbo', 'Sc01g0002300' => 'sci', 'Sc01g0004450' => 'sci', 'Sc06g0001680' => 'sci', 'Sc23g0003580' => 'sci', 'Sed0000913' => 'sed', 'Sed0001655' => 'sed', 'Sed0007745' => 'sed', 'Sed0010951' => 'sed', 'Sed0017599' => 'sed', 'Sed0021405' => 'sed', 'Sed0022810' => 'sed', 'SEGI_07099' => 'sgi', 'SEGI_11931' => 'sgi', 'SEGI_13187' => 'sgi', 'SEGI_29958' => 'sgi', 'SEGI_36351' => 'sgi', 'SGA_v2.0_scaffold126G33770' => 'sas', 'SGA_v2.0_scaffold153G37003' => 'sas', 'SGA_v2.0_scaffold2G01359' => 'sas', 'SGA_v2.0_scaffold5G03064' => 'sas', 'SGA_v2.0_scaffold95G28903' => 'sas', 'SHI12701' => 'shi', 'SHI26410' => 'shi', 'SHI38997' => 'shi', 'SHI53759' => 'shi', 'SHI53886' => 'shi', 'SHI54714' => 'shi', 'SMO011G0041' => 'smo', 'SMO146G0251' => 'smo', 'SMO160G0004' => 'smo', 'SMO174G0057' => 'smo', 'SMO244G0089' => 'smo', 'SMO296G0011' => 'smo', 'Solyc01g091280.3' => 'sly', 'Solyc05g047610.3' => 'sly', 'Solyc05g047640.3' => 'sly', 'Solyc05g055630.3' => 'sly', 'Solyc10g018160.2' => 'sly', 'Solyc10g084820.2' => 'sly', 'Solyc10g086565.2' => 'sly', 'Sopen01g037030' => 'spe', 'Sopen05g027920' => 'spe', 'Sopen05g034070' => 'spe', 'Sopen10g007260' => 'spe', 'Sopen10g034260' => 'spe', 'Sopen10g035950' => 'spe', 'Sp3g07710' => 'spa', 'Sp4g27420' => 'spa', 'Sp5g02450' => 'spa', 'Sp6g01280' => 'spa', 'Sp6g38480' => 'spa', 'Sp7g20780' => 'spa', 'TAR374G1413' => 'tar', 'TAR623G1777' => 'tar', 'TAR629G2370' => 'tar', 'TAR633G1759' => 'tar', 'TAR636G3387' => 'tar', 'THA.LOC104802447' => 'tha', 'THA.LOC104813916' => 'tha', 'THA.LOC104816423' => 'tha', 'THA.LOC104817246' => 'tha', 'THA.LOC104825895' => 'tha', 'Thecc.01G335200' => 'tca', 'Thecc.01G377400' => 'tca', 'Thecc.03G262200' => 'tca', 'Thecc.05G036800' => 'tca', 'Thecc.10G080500' => 'tca', 'Thecc.10G080800' => 'tca', 'Thhalv10001560m.g' => 'esa', 'Thhalv10006120m.g' => 'esa', 'Thhalv10014375m.g' => 'esa', 'Thhalv10021264m.g' => 'esa', 'Thhalv10028856m.g' => 'esa', 'TPR.G1914' => 'tpr', 'TPR.G4757' => 'tpr', 'TPR.G5595' => 'tpr', 'TWI14G0952' => 'twi', 'TWI14G1307' => 'twi', 'TWI38G2143' => 'twi', 'TWI59G0826' => 'twi', 'TWI77G0527' => 'twi', 'TWI81G0150' => 'twi', 'unitig_21.g21018' => 'ugi', 'unitig_26.g9725' => 'ugi', 'unitig_744.g24653' => 'ugi', 'unitig_749.g13778' => 'ugi', 'unitig_899.g15035' => 'ugi', 'vmacro04296' => 'vma', 'vmacro04852' => 'vma', 'vmacro13404' => 'vma', 'vmacro20169' => 'vma', 'vmacro21014' => 'vma', 'VMungo0331G0237' => 'vmu', 'VMungo0331G0706' => 'vmu', 'VMungo0331G1361' => 'vmu', 'VMungo0331G1489' => 'vmu', 'VMungo0540G1037' => 'vmu', 'VMungo0720G2487' => 'vmu', 'VMungo0720G2721' => 'vmu', 'Zm00001eb086860' => 'zma', 'Zm00001eb104760' => 'zma', 'Zm00001eb148220' => 'zma', 'Zm00001eb259030' => 'zma', 'Zm00001eb289590' => 'zma', 'Zm00001eb420150' => 'zma' ), 'gf_id' => 'HOM05D000968', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000968' ), 'data_identifier' => 'HOM05D000968', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000968', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p31690' => 'bna', 'A03p36040' => 'bna', 'A03p53730' => 'bna', 'A04p01410' => 'bna', 'A05p05420' => 'bna', 'A05p39630' => 'bna', 'A05p39640' => 'bna', 'A09p00970' => 'bna', 'A09p53060' => 'bna', 'A10p31890' => 'bna', 'Aa31LG10G15040' => 'aar', 'Aa31LG1G21090' => 'aar', 'Aa31LG1G26900' => 'aar', 'Aa31LG3G1820' => 'aar', 'Aa31LG5G1100' => 'aar', 'Aa31LG6G4740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2265' => 'aag', 'Actinidia07998' => 'ach', 'Actinidia11266' => 'ach', 'Actinidia12682' => 'ach', 'Actinidia26479' => 'ach', 'Actinidia31406' => 'ach', 'Actinidia32437' => 'ach', 'Actinidia38862' => 'ach', 'Ah.05g174230' => 'amhyb', 'Ah.05g179070' => 'amhyb', 'Ah.05g179090' => 'amhyb', 'Ah.12g059950' => 'amhyb', 'AL3G20480' => 'aly', 'AL4G44520' => 'aly', 'AL5G43110' => 'aly', 'AL6G13890' => 'aly', 'AL6G52620' => 'aly', 'AL7G30830' => 'aly', 'Aqoxy1G00899' => 'aox', 'Aqoxy5G04333' => 'aox', 'Aqoxy7G00641' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3IZ0NN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4EF6AW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W9P8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79GA3M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C43NQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFCU6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G95YVJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCHK29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LU1UG8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX91RN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGB4B1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8DA0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9H7JI' => 'arhy', 'AT3G09320' => 'ath', 'AT3G60800' => 'ath', 'AT4G00840' => 'ath', 'AT4G22750' => 'ath', 'AT5G04270' => 'ath', 'ATR0090G003' => 'atr', 'ATR0559G349' => 'atr', 'ATR0680G261' => 'atr', 'ATR0810G048' => 'atr', 'Atru.chr12.831' => 'acertr', 'Atru.chr5.303' => 'acertr', 'Atru.chr5.748' => 'acertr', 'Atru.chr8.1999' => 'acertr', 'Atru.chr9.1436' => 'acertr', 'AUR62004211' => 'cqu', 'AUR62004548' => 'cqu', 'AUR62013637' => 'cqu', 'AUR62022662' => 'cqu', 'AUR62025777' => 'cqu', 'AUR62042386' => 'cqu', 'BcaB01g02310' => 'bca', 'BcaB01g06062' => 'bca', 'BcaB02g08975' => 'bca', 'BcaB02g08980' => 'bca', 'BcaC01g04228' => 'bca', 'BcaC01g06830' => 'bca', 'BcaC02g10186' => 'bca', 'BcaC02g12214' => 'bca', 'BcaC04g24101' => 'bca', 'BcaC05g29520' => 'bca', 'BcaC05g29661' => 'bca', 'BcaC06g32130' => 'bca', 'BcaC06g32131' => 'bca', 'BcaC07g40601' => 'bca', 'BcaC07g42641' => 'bca', 'BcaNung01038' => 'bca', 'BcaNung01676' => 'bca', 'BcaNung02480' => 'bca', 'BcaNung07376' => 'bca', 'BolC3t16146H' => 'bol', 'BolC3t16637H' => 'bol', 'BolC4t22257H' => 'bol', 'BolC4t24728H' => 'bol', 'BolC5t34517H' => 'bol', 'BolC7t45703H' => 'bol', 'BolC8t51166H' => 'bol', 'BolC9t53038H' => 'bol', 'BolC9t60000H' => 'bol', 'BraA01t01345Z' => 'bra', 'BraA01t01346Z' => 'bra', 'BraA01t01348Z' => 'bra', 'BraA03t12347Z' => 'bra', 'BraA03t12775Z' => 'bra', 'BraA03t14439Z' => 'bra', 'BraA04t15860Z' => 'bra', 'BraA05t19511Z' => 'bra', 'BraA05t22746Z' => 'bra', 'BraA09t35767Z' => 'bra', 'BraA09t40732Z' => 'bra', 'BraA10t45233Z' => 'bra', 'C03p38720' => 'bna', 'C03p43680' => 'bna', 'C04p06350' => 'bna', 'C04p31800' => 'bna', 'C05p58680' => 'bna', 'C07p52110' => 'bna', 'C08p35760' => 'bna', 'C09p01050' => 'bna', 'C09p72600' => 'bna', 'CAN.G106.2' => 'can', 'CAN.G1482.1' => 'can', 'CAN.G324.12' => 'can', 'CAN.G388.20' => 'can', 'CAN.G412.7' => 'can', 'CAN.G694.32' => 'can', 'CAN.G92.12' => 'can', 'CANSAT11G2353' => 'cansat', 'CANSAT21G1398' => 'cansat', 'CANSAT56G2456' => 'cansat', 'CANSAT56G3031' => 'cansat', 'CANSAT56G4539' => 'cansat', 'CARHR083680' => 'chi', 'CARHR171190' => 'chi', 'CARHR209010' => 'chi', 'CARHR229680' => 'chi', 'CARHR249490' => 'chi', 'Carub.0003s0844' => 'cru', 'Carub.0005s2755' => 'cru', 'Carub.0006s0322' => 'cru', 'Carub.0006s3586' => 'cru', 'Carub.0007s1855' => 'cru', 'Ca_07808_v3' => 'car', 'Ca_09535_v3' => 'car', 'Ca_10548_v3' => 'car', 'Ca_19913_v3' => 'car', 'Ca_19916_v3' => 'car', 'Ca_19975_v3' => 'car', 'CBR_g22876' => 'cbr', 'CBR_g22879' => 'cbr', 'CBR_g38491' => 'cbr', 'CBR_g54185' => 'cbr', 'CBR_g54190' => 'cbr', 'Cc02_g11020' => 'ccan', 'Cc02_g23920' => 'ccan', 'Cc02_g39860' => 'ccan', 'Cc02_g39870' => 'ccan', 'Cc03_g06760' => 'ccan', 'Cc06_g02450' => 'ccan', 'Cc09_g09450' => 'ccan', 'CDE02G1959' => 'cde', 'CDE04G0600' => 'cde', 'CDE07G1996' => 'cde', 'CDE07G2078' => 'cde', 'CDE11G0611' => 'cde', 'Cfa001683' => 'cfa', 'Cfa001734' => 'cfa', 'Cfa001737' => 'cfa', 'Cfa003751' => 'cfa', 'Cfa012019' => 'cfa', 'Cfa017353' => 'cfa', 'Cfa017732' => 'cfa', 'Cfa022464' => 'cfa', 'Ciclev10012400m.g' => 'ccl', 'Ciclev10021242m.g' => 'ccl', 'Ciclev10021302m.g' => 'ccl', 'Ciclev10021463m.g' => 'ccl', 'Ciclev10032359m.g' => 'ccl', 'CiPaw.01G081000' => 'cil', 'CiPaw.01G262500' => 'cil', 'CiPaw.01G269800' => 'cil', 'CiPaw.02G168400' => 'cil', 'CiPaw.05G119500' => 'cil', 'CiPaw.11G147300' => 'cil', 'ClCG01G003630' => 'cla', 'ClCG05G000510' => 'cla', 'ClCG05G002300' => 'cla', 'ClCG08G007650' => 'cla', 'ClCG10G021250' => 'cla', 'COL.COLO4_06218' => 'col', 'COL.COLO4_12538' => 'col', 'COL.COLO4_14775' => 'col', 'COL.COLO4_23875' => 'col', 'Cpa.g.sc141.16' => 'cpa', 'Cpa.g.sc169.16' => 'cpa', 'Cpa.g.sc244.4' => 'cpa', 'Cpa.g.sc244.5' => 'cpa', 'Cpa.g.sc29.87' => 'cpa', 'Cpa.g.sc53.115' => 'cpa', 'Cre03.g207502' => 'cre', 'Cre06.g277000' => 'cre', 'Cre09.g394050' => 'cre', 'CsaV3_3G007680' => 'csa', 'CsaV3_3G009710' => 'csa', 'CsaV3_3G034790' => 'csa', 'CsaV3_5G003750' => 'csa', 'CsaV3_6G036620' => 'csa', 'CSS0002288' => 'camsi', 'CSS0011250' => 'camsi', 'CSS0021619' => 'camsi', 'CSS0046701' => 'camsi', 'DCAR_006420' => 'dca', 'DCAR_006865' => 'dca', 'DCAR_008558' => 'dca', 'DCAR_028754' => 'dca', 'DCAR_028755' => 'dca', 'Dinv31218' => 'din', 'Dinv32371' => 'din', 'Dinv34250' => 'din', 'Dinv37156' => 'din', 'Dinv43704' => 'din', 'Duzib093G1811' => 'dzi', 'Duzib106G1622' => 'dzi', 'Duzib114G0504' => 'dzi', 'Duzib128G0338' => 'dzi', 'Duzib128G1577' => 'dzi', 'Duzib133G0104' => 'dzi', 'Duzib133G1080' => 'dzi', 'Duzib138G0324' => 'dzi', 'Duzib138G0394' => 'dzi', 'Duzib205G0122' => 'dzi', 'Duzib268G1020' => 'dzi', 'Duzib268G1359' => 'dzi', 'ECA232G3929' => 'eca', 'ECA236G2210' => 'eca', 'ECA236G2287' => 'eca', 'ECA240G4568' => 'eca', 'ECA247G0894' => 'eca', 'EL10Ac1g00200' => 'bvu', 'EL10Ac1g00886' => 'bvu', 'EL10As1g23091' => 'bvu', 'EL10As1g23092' => 'bvu', 'Eucgr.A01284' => 'egr', 'Eucgr.A01285' => 'egr', 'Eucgr.D02456' => 'egr', 'Eucgr.E00018' => 'egr', 'Eucgr.E01439' => 'egr', 'Eucgr.G02859' => 'egr', 'FAN01G0168' => 'fan', 'FAN01G0453' => 'fan', 'FAN01G2761' => 'fan', 'FAN02G1239' => 'fan', 'FAN03G0645' => 'fan', 'FAN03G2707' => 'fan', 'FAN03G2978' => 'fan', 'FAN04G0227' => 'fan', 'FAN06G0091' => 'fan', 'FAN06G1418' => 'fan', 'FAN06G1512' => 'fan', 'FAN06G1986' => 'fan', 'FAN06G2905' => 'fan', 'FAN06G4325' => 'fan', 'FAN08G0033' => 'fan', 'FAN09G0642' => 'fan', 'FAN10G1763' => 'fan', 'FAN10G2026' => 'fan', 'FAN10G2513' => 'fan', 'FAN10G3402' => 'fan', 'FAN10G3564' => 'fan', 'FAN10G3987' => 'fan', 'FAN13G1490' => 'fan', 'FAN14G5857' => 'fan', 'FAN18G1188' => 'fan', 'FvH4_5g00750' => 'fve', 'FvH4_6g13410' => 'fve', 'FvH4_7g11740' => 'fve', 'FvH4_7g17410' => 'fve', 'FvH4_7g18860' => 'fve', 'Glyma.01G099100' => 'gma', 'Glyma.01G142300' => 'gma', 'Glyma.03G025500' => 'gma', 'Glyma.03G069700' => 'gma', 'Glyma.03G260000' => 'gma', 'Glyma.09G269800' => 'gma', 'Glyma.10G208700' => 'gma', 'Glyma.18G220400' => 'gma', 'Glyma.20G182000' => 'gma', 'Gohir.A01G221726' => 'ghi', 'Gohir.A07G134600' => 'ghi', 'Gohir.A07G146000' => 'ghi', 'Gohir.A08G173900' => 'ghi', 'Gohir.A09G194900' => 'ghi', 'Gohir.A10G204100' => 'ghi', 'Gohir.A11G080600' => 'ghi', 'Gohir.A11G327500' => 'ghi', 'Gohir.A12G101800' => 'ghi', 'Gohir.D01G211200' => 'ghi', 'Gohir.D07G139200' => 'ghi', 'Gohir.D07G152100' => 'ghi', 'Gohir.D08G192600' => 'ghi', 'Gohir.D09G189200' => 'ghi', 'Gohir.D10G212000' => 'ghi', 'Gohir.D11G085200' => 'ghi', 'Gohir.D11G346400' => 'ghi', 'Gohir.D12G104800' => 'ghi', 'Gorai.001G151300' => 'gra', 'Gorai.001G174100' => 'gra', 'Gorai.002G257000' => 'gra', 'Gorai.004G202600' => 'gra', 'Gorai.007G090900' => 'gra', 'Gorai.007G376700' => 'gra', 'Gorai.008G114100' => 'gra', 'Gorai.011G237900' => 'gra', 'GSVIVG01005450001' => 'vvi', 'GSVIVG01016232001' => 'vvi', 'GSVIVG01026157001' => 'vvi', 'GSVIVG01027419001' => 'vvi', 'GSVIVG01027631001' => 'vvi', 'GSVIVG01034143001' => 'vvi', 'HanXRQChr03g0093921' => 'han', 'HanXRQChr04g0120001' => 'han', 'HanXRQChr04g0122561' => 'han', 'HanXRQChr09g0246851' => 'han', 'HanXRQChr10g0293311' => 'han', 'HanXRQChr13g0425231' => 'han', 'HanXRQChr16g0532571' => 'han', 'Haze_09050' => 'cav', 'Haze_15715' => 'cav', 'Haze_15716' => 'cav', 'Haze_16803' => 'cav', 'Haze_16850' => 'cav', 'Hma1.2p1_0301F.1_g118655' => 'hma', 'Hma1.2p1_0309F.1_g120590' => 'hma', 'Hma1.2p1_0936F.1_g238900' => 'hma', 'Hma1.2p1_3552F.1_g336740' => 'hma', 'HPP92_003520' => 'vpl', 'HPP92_006628' => 'vpl', 'HPP92_006645' => 'vpl', 'HPP92_014669' => 'vpl', 'HPP92_015077' => 'vpl', 'Hund16742' => 'sun', 'Hund17022' => 'sun', 'Lalb_Chr02g0152131' => 'lal', 'Lalb_Chr05g0225371' => 'lal', 'Lalb_Chr07g0189841' => 'lal', 'Lalb_Chr07g0192961' => 'lal', 'Lalb_Chr12g0208221' => 'lal', 'Lalb_Chr13g0291211' => 'lal', 'Lalb_Chr13g0291781' => 'lal', 'Lalb_Chr18g0044651' => 'lal', 'Lalb_Chr21g0313731' => 'lal', 'Lj1g0022533' => 'lja', 'Lj2A18T50' => 'lonja', 'Lj2A92G93' => 'lonja', 'Lj3A965T73' => 'lonja', 'Lj3g0000673' => 'lja', 'Lj3g0002666' => 'lja', 'Lj4g0016985' => 'lja', 'Lj5g0003625' => 'lja', 'Lj7A529G36' => 'lonja', 'Lj9A569T49' => 'lonja', 'Lj9A604T63' => 'lonja', 'Lsat_1_v5_gn_3_132060' => 'lsa', 'Lsat_1_v5_gn_4_68941' => 'lsa', 'Lsat_1_v5_gn_5_95580' => 'lsa', 'Lsat_1_v5_gn_7_161' => 'lsa', 'Lsat_1_v5_gn_7_7041' => 'lsa', 'Lsat_1_v5_gn_9_33481' => 'lsa', 'Lsat_1_v5_gn_9_68260' => 'lsa', 'Manes.01G073100' => 'mes', 'Manes.01G266300' => 'mes', 'Manes.02G033300' => 'mes', 'Manes.05G017900' => 'mes', 'Manes.05G046100' => 'mes', 'Manes.08G080900' => 'mes', 'Manes.10G049400' => 'mes', 'Mapoly0009s0186' => 'mpo', 'Mapoly0036s0118' => 'mpo', 'Mapoly0101s0046' => 'mpo', 'MBI04_g30218_MAGBIO' => 'mbi', 'MBI04_g35564_MAGBIO' => 'mbi', 'MBI12_g34011_MAGBIO' => 'mbi', 'MBI14_g04655_MAGBIO' => 'mbi', 'MCO07G653' => 'mco', 'MCO10G173' => 'mco', 'MD01G1087100' => 'mdo', 'MD01G1104200' => 'mdo', 'MD02G1205100' => 'mdo', 'MD04G1079200' => 'mdo', 'MD04G1131400' => 'mdo', 'MD07G1121600' => 'mdo', 'MD07G1157300' => 'mdo', 'MD07G1171000' => 'mdo', 'MD12G1144500' => 'mdo', 'Medtr1g094610' => 'mtr', 'Medtr4g021795' => 'mtr', 'Medtr4g023760' => 'mtr', 'Medtr7g118050' => 'mtr', 'MELO3C005582.2' => 'cme', 'MELO3C005989.2' => 'cme', 'MELO3C006192.2' => 'cme', 'MELO3C009248.2' => 'cme', 'MELO3C019817.2' => 'cme', 'Migut.B01625' => 'egut', 'Migut.B01915' => 'egut', 'Migut.F01721' => 'egut', 'Migut.J00314' => 'egut', 'MSTRG.20742' => 'ama', 'MSTRG.8134' => 'ama', 'Nitab4.5_0000096g0010' => 'nta', 'Nitab4.5_0000202g0030' => 'nta', 'Nitab4.5_0000216g0370' => 'nta', 'Nitab4.5_0000457g0230' => 'nta', 'Nitab4.5_0001702g0170' => 'nta', 'Nitab4.5_0003607g0010' => 'nta', 'Nitab4.5_0004917g0020' => 'nta', 'Nitab4.5_0007059g0010' => 'nta', 'Nitab4.5_0007184g0010' => 'nta', 'Nitab4.5_0007346g0020' => 'nta', 'Nn1g00410' => 'nnu', 'Nn1g01252' => 'nnu', 'Nn2g11168' => 'nnu', 'Nn2g13403' => 'nnu', 'Nn2g13760' => 'nnu', 'Nn4g26380' => 'nnu', 'Oeu000806.2' => 'oeu', 'Oeu005788.1' => 'oeu', 'Oeu006900.3' => 'oeu', 'Oeu007797.1' => 'oeu', 'Oeu011932.1' => 'oeu', 'Oeu022739.1' => 'oeu', 'Oeu037918.1' => 'oeu', 'Oeu055490.2' => 'oeu', 'Os01g0844400' => 'osa', 'Os02g0819100' => 'osa', 'Os03g0804300' => 'osa', 'Os05g0458000' => 'osa', 'Os07g0467800' => 'osa', 'Os12g0602200' => 'osa', 'Peaxi162Scf00013g03444' => 'pax', 'Peaxi162Scf00094g01120' => 'pax', 'Peaxi162Scf00191g01211' => 'pax', 'Peaxi162Scf00238g01110' => 'pax', 'Peaxi162Scf00330g00719' => 'pax', 'Peaxi162Scf00627g00018' => 'pax', 'PGR031G2686' => 'pgr', 'PGR042G0809' => 'pgr', 'PGR142G0193' => 'pgr', 'PGSC0003DMG400011066' => 'stu', 'PGSC0003DMG400012041' => 'stu', 'PGSC0003DMG400013678' => 'stu', 'PGSC0003DMG400023477' => 'stu', 'PGSC0003DMG400025956' => 'stu', 'PGSC0003DMG401019151' => 'stu', 'Phvul.006G116400' => 'pvu', 'Phvul.007G097300' => 'pvu', 'Phvul.010G015000' => 'pvu', 'Phvul.010G083900' => 'pvu', 'Potri.001G117100' => 'ptr', 'Potri.002G147300' => 'ptr', 'Potri.003G115600' => 'ptr', 'Potri.006G087400' => 'ptr', 'Potri.010G226100' => 'ptr', 'Potri.014G069200' => 'ptr', 'Potri.014G104000' => 'ptr', 'Potri.016G100200' => 'ptr', 'Pp3c10_20450' => 'ppa', 'Pp3c1_42400' => 'ppa', 'Pp3c3_24390' => 'ppa', 'Pp3c3_2860' => 'ppa', 'PRCOL_00003193' => 'pco', 'Prupe.2G144500' => 'ppe', 'Prupe.2G195700' => 'ppe', 'Prupe.2G209800' => 'ppe', 'Prupe.5G080000' => 'ppe', 'Prupe.6G257900' => 'ppe', 'Psat3g001160' => 'psa', 'Psat6g181880' => 'psa', 'Psat7g233720' => 'psa', 'PSO063G7587' => 'pso', 'PSO339G2145' => 'pso', 'PSO339G3369' => 'pso', 'PSO478G2747' => 'pso', 'PSO513G0140' => 'pso', 'PSO782G1614' => 'pso', 'PSO782G4889' => 'pso', 'PSO782G5485' => 'pso', 'PSO801G0241' => 'pso', 'QL07p048854' => 'qlo', 'QL08p046745' => 'qlo', 'QL08p052606' => 'qlo', 'QL08p053414' => 'qlo', 'QL08p054868' => 'qlo', 'RcHm_v2.0_Chr1g0350251' => 'rch', 'RcHm_v2.0_Chr1g0360851' => 'rch', 'RcHm_v2.0_Chr1g0362791' => 'rch', 'RcHm_v2.0_Chr3g0466281' => 'rch', 'RcHm_v2.0_Chr7g0201481' => 'rch', 'Rhsim01G0148600' => 'rsi', 'Rhsim05G0194400' => 'rsi', 'Rhsim07G0000700' => 'rsi', 'Rhsim07G0000800' => 'rsi', 'Rhsim07G0027900' => 'rsi', 'Rhsim09G0149500' => 'rsi', 'RhsimUnG0186900' => 'rsi', 'Sabra01G0089900' => 'sbr', 'Sabra02G0114700' => 'sbr', 'Sabra02G0116300' => 'sbr', 'Sabra03G0080100' => 'sbr', 'Sabra08G0024300' => 'sbr', 'Sabra10G0174300' => 'sbr', 'Sabra14G0048900' => 'sbr', 'Sabra14G0076500' => 'sbr', 'SalBow5G2513' => 'sbo', 'Sc01g0002300' => 'sci', 'Sc01g0004450' => 'sci', 'Sc06g0001680' => 'sci', 'Sc23g0003580' => 'sci', 'Sed0000913' => 'sed', 'Sed0001655' => 'sed', 'Sed0007745' => 'sed', 'Sed0010951' => 'sed', 'Sed0017599' => 'sed', 'Sed0021405' => 'sed', 'Sed0022810' => 'sed', 'SEGI_07099' => 'sgi', 'SEGI_11931' => 'sgi', 'SEGI_13187' => 'sgi', 'SEGI_29958' => 'sgi', 'SEGI_36351' => 'sgi', 'SGA_v2.0_scaffold126G33770' => 'sas', 'SGA_v2.0_scaffold153G37003' => 'sas', 'SGA_v2.0_scaffold2G01359' => 'sas', 'SGA_v2.0_scaffold5G03064' => 'sas', 'SGA_v2.0_scaffold95G28903' => 'sas', 'SHI12701' => 'shi', 'SHI26410' => 'shi', 'SHI38997' => 'shi', 'SHI53759' => 'shi', 'SHI53886' => 'shi', 'SHI54714' => 'shi', 'SMO011G0041' => 'smo', 'SMO146G0251' => 'smo', 'SMO160G0004' => 'smo', 'SMO174G0057' => 'smo', 'SMO244G0089' => 'smo', 'SMO296G0011' => 'smo', 'Solyc01g091280.3' => 'sly', 'Solyc05g047610.3' => 'sly', 'Solyc05g047640.3' => 'sly', 'Solyc05g055630.3' => 'sly', 'Solyc10g018160.2' => 'sly', 'Solyc10g084820.2' => 'sly', 'Solyc10g086565.2' => 'sly', 'Sopen01g037030' => 'spe', 'Sopen05g027920' => 'spe', 'Sopen05g034070' => 'spe', 'Sopen10g007260' => 'spe', 'Sopen10g034260' => 'spe', 'Sopen10g035950' => 'spe', 'Sp3g07710' => 'spa', 'Sp4g27420' => 'spa', 'Sp5g02450' => 'spa', 'Sp6g01280' => 'spa', 'Sp6g38480' => 'spa', 'Sp7g20780' => 'spa', 'TAR374G1413' => 'tar', 'TAR623G1777' => 'tar', 'TAR629G2370' => 'tar', 'TAR633G1759' => 'tar', 'TAR636G3387' => 'tar', 'THA.LOC104802447' => 'tha', 'THA.LOC104813916' => 'tha', 'THA.LOC104816423' => 'tha', 'THA.LOC104817246' => 'tha', 'THA.LOC104825895' => 'tha', 'Thecc.01G335200' => 'tca', 'Thecc.01G377400' => 'tca', 'Thecc.03G262200' => 'tca', 'Thecc.05G036800' => 'tca', 'Thecc.10G080500' => 'tca', 'Thecc.10G080800' => 'tca', 'Thhalv10001560m.g' => 'esa', 'Thhalv10006120m.g' => 'esa', 'Thhalv10014375m.g' => 'esa', 'Thhalv10021264m.g' => 'esa', 'Thhalv10028856m.g' => 'esa', 'TPR.G1914' => 'tpr', 'TPR.G4757' => 'tpr', 'TPR.G5595' => 'tpr', 'TWI14G0952' => 'twi', 'TWI14G1307' => 'twi', 'TWI38G2143' => 'twi', 'TWI59G0826' => 'twi', 'TWI77G0527' => 'twi', 'TWI81G0150' => 'twi', 'unitig_21.g21018' => 'ugi', 'unitig_26.g9725' => 'ugi', 'unitig_744.g24653' => 'ugi', 'unitig_749.g13778' => 'ugi', 'unitig_899.g15035' => 'ugi', 'vmacro04296' => 'vma', 'vmacro04852' => 'vma', 'vmacro13404' => 'vma', 'vmacro20169' => 'vma', 'vmacro21014' => 'vma', 'VMungo0331G0237' => 'vmu', 'VMungo0331G0706' => 'vmu', 'VMungo0331G1361' => 'vmu', 'VMungo0331G1489' => 'vmu', 'VMungo0540G1037' => 'vmu', 'VMungo0720G2487' => 'vmu', 'VMungo0720G2721' => 'vmu', 'Zm00001eb086860' => 'zma', 'Zm00001eb104760' => 'zma', 'Zm00001eb148220' => 'zma', 'Zm00001eb259030' => 'zma', 'Zm00001eb289590' => 'zma', 'Zm00001eb420150' => 'zma' ) $gf_id = 'HOM05D000968' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000968' ) $data_identifier = 'HOM05D000968' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 19, 'bol' => (int) 9, 'bra' => (int) 12, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 5, 'ccan' => (int) 7, 'cde' => (int) 5, 'cfa' => (int) 8, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 4, 'dca' => (int) 5, 'din' => (int) 5, 'dzi' => (int) 12, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 25, 'fve' => (int) 5, 'gma' => (int) 9, 'ghi' => (int) 18, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 7, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 5, 'sun' => (int) 2, 'lal' => (int) 9, 'lja' => (int) 5, 'lonja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 9, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 2, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 3, 'stu' => (int) 6, 'pvu' => (int) 4, 'ptr' => (int) 8, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 3, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 1, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 5, 'sas' => (int) 5, 'shi' => (int) 6, 'smo' => (int) 6, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 3, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420150' $species_info = array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ) $local_species = 'din' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000968', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p31690' => 'bna', 'A03p36040' => 'bna', 'A03p53730' => 'bna', 'A04p01410' => 'bna', 'A05p05420' => 'bna', 'A05p39630' => 'bna', 'A05p39640' => 'bna', 'A09p00970' => 'bna', 'A09p53060' => 'bna', 'A10p31890' => 'bna', 'Aa31LG10G15040' => 'aar', 'Aa31LG1G21090' => 'aar', 'Aa31LG1G26900' => 'aar', 'Aa31LG3G1820' => 'aar', 'Aa31LG5G1100' => 'aar', 'Aa31LG6G4740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2265' => 'aag', 'Actinidia07998' => 'ach', 'Actinidia11266' => 'ach', 'Actinidia12682' => 'ach', 'Actinidia26479' => 'ach', 'Actinidia31406' => 'ach', 'Actinidia32437' => 'ach', 'Actinidia38862' => 'ach', 'Ah.05g174230' => 'amhyb', 'Ah.05g179070' => 'amhyb', 'Ah.05g179090' => 'amhyb', 'Ah.12g059950' => 'amhyb', 'AL3G20480' => 'aly', 'AL4G44520' => 'aly', 'AL5G43110' => 'aly', 'AL6G13890' => 'aly', 'AL6G52620' => 'aly', 'AL7G30830' => 'aly', 'Aqoxy1G00899' => 'aox', 'Aqoxy5G04333' => 'aox', 'Aqoxy7G00641' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3IZ0NN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4EF6AW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W9P8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79GA3M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C43NQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFCU6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G95YVJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCHK29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LU1UG8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX91RN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGB4B1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8DA0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9H7JI' => 'arhy', 'AT3G09320' => 'ath', 'AT3G60800' => 'ath', 'AT4G00840' => 'ath', 'AT4G22750' => 'ath', 'AT5G04270' => 'ath', 'ATR0090G003' => 'atr', 'ATR0559G349' => 'atr', 'ATR0680G261' => 'atr', 'ATR0810G048' => 'atr', 'Atru.chr12.831' => 'acertr', 'Atru.chr5.303' => 'acertr', 'Atru.chr5.748' => 'acertr', 'Atru.chr8.1999' => 'acertr', 'Atru.chr9.1436' => 'acertr', 'AUR62004211' => 'cqu', 'AUR62004548' => 'cqu', 'AUR62013637' => 'cqu', 'AUR62022662' => 'cqu', 'AUR62025777' => 'cqu', 'AUR62042386' => 'cqu', 'BcaB01g02310' => 'bca', 'BcaB01g06062' => 'bca', 'BcaB02g08975' => 'bca', 'BcaB02g08980' => 'bca', 'BcaC01g04228' => 'bca', 'BcaC01g06830' => 'bca', 'BcaC02g10186' => 'bca', 'BcaC02g12214' => 'bca', 'BcaC04g24101' => 'bca', 'BcaC05g29520' => 'bca', 'BcaC05g29661' => 'bca', 'BcaC06g32130' => 'bca', 'BcaC06g32131' => 'bca', 'BcaC07g40601' => 'bca', 'BcaC07g42641' => 'bca', 'BcaNung01038' => 'bca', 'BcaNung01676' => 'bca', 'BcaNung02480' => 'bca', 'BcaNung07376' => 'bca', 'BolC3t16146H' => 'bol', 'BolC3t16637H' => 'bol', 'BolC4t22257H' => 'bol', 'BolC4t24728H' => 'bol', 'BolC5t34517H' => 'bol', 'BolC7t45703H' => 'bol', 'BolC8t51166H' => 'bol', 'BolC9t53038H' => 'bol', 'BolC9t60000H' => 'bol', 'BraA01t01345Z' => 'bra', 'BraA01t01346Z' => 'bra', 'BraA01t01348Z' => 'bra', 'BraA03t12347Z' => 'bra', 'BraA03t12775Z' => 'bra', 'BraA03t14439Z' => 'bra', 'BraA04t15860Z' => 'bra', 'BraA05t19511Z' => 'bra', 'BraA05t22746Z' => 'bra', 'BraA09t35767Z' => 'bra', 'BraA09t40732Z' => 'bra', 'BraA10t45233Z' => 'bra', 'C03p38720' => 'bna', 'C03p43680' => 'bna', 'C04p06350' => 'bna', 'C04p31800' => 'bna', 'C05p58680' => 'bna', 'C07p52110' => 'bna', 'C08p35760' => 'bna', 'C09p01050' => 'bna', 'C09p72600' => 'bna', 'CAN.G106.2' => 'can', 'CAN.G1482.1' => 'can', 'CAN.G324.12' => 'can', 'CAN.G388.20' => 'can', 'CAN.G412.7' => 'can', 'CAN.G694.32' => 'can', 'CAN.G92.12' => 'can', 'CANSAT11G2353' => 'cansat', 'CANSAT21G1398' => 'cansat', 'CANSAT56G2456' => 'cansat', 'CANSAT56G3031' => 'cansat', 'CANSAT56G4539' => 'cansat', 'CARHR083680' => 'chi', 'CARHR171190' => 'chi', 'CARHR209010' => 'chi', 'CARHR229680' => 'chi', 'CARHR249490' => 'chi', 'Carub.0003s0844' => 'cru', 'Carub.0005s2755' => 'cru', 'Carub.0006s0322' => 'cru', 'Carub.0006s3586' => 'cru', 'Carub.0007s1855' => 'cru', 'Ca_07808_v3' => 'car', 'Ca_09535_v3' => 'car', 'Ca_10548_v3' => 'car', 'Ca_19913_v3' => 'car', 'Ca_19916_v3' => 'car', 'Ca_19975_v3' => 'car', 'CBR_g22876' => 'cbr', 'CBR_g22879' => 'cbr', 'CBR_g38491' => 'cbr', 'CBR_g54185' => 'cbr', 'CBR_g54190' => 'cbr', 'Cc02_g11020' => 'ccan', 'Cc02_g23920' => 'ccan', 'Cc02_g39860' => 'ccan', 'Cc02_g39870' => 'ccan', 'Cc03_g06760' => 'ccan', 'Cc06_g02450' => 'ccan', 'Cc09_g09450' => 'ccan', 'CDE02G1959' => 'cde', 'CDE04G0600' => 'cde', 'CDE07G1996' => 'cde', 'CDE07G2078' => 'cde', 'CDE11G0611' => 'cde', 'Cfa001683' => 'cfa', 'Cfa001734' => 'cfa', 'Cfa001737' => 'cfa', 'Cfa003751' => 'cfa', 'Cfa012019' => 'cfa', 'Cfa017353' => 'cfa', 'Cfa017732' => 'cfa', 'Cfa022464' => 'cfa', 'Ciclev10012400m.g' => 'ccl', 'Ciclev10021242m.g' => 'ccl', 'Ciclev10021302m.g' => 'ccl', 'Ciclev10021463m.g' => 'ccl', 'Ciclev10032359m.g' => 'ccl', 'CiPaw.01G081000' => 'cil', 'CiPaw.01G262500' => 'cil', 'CiPaw.01G269800' => 'cil', 'CiPaw.02G168400' => 'cil', 'CiPaw.05G119500' => 'cil', 'CiPaw.11G147300' => 'cil', 'ClCG01G003630' => 'cla', 'ClCG05G000510' => 'cla', 'ClCG05G002300' => 'cla', 'ClCG08G007650' => 'cla', 'ClCG10G021250' => 'cla', 'COL.COLO4_06218' => 'col', 'COL.COLO4_12538' => 'col', 'COL.COLO4_14775' => 'col', 'COL.COLO4_23875' => 'col', 'Cpa.g.sc141.16' => 'cpa', 'Cpa.g.sc169.16' => 'cpa', 'Cpa.g.sc244.4' => 'cpa', 'Cpa.g.sc244.5' => 'cpa', 'Cpa.g.sc29.87' => 'cpa', 'Cpa.g.sc53.115' => 'cpa', 'Cre03.g207502' => 'cre', 'Cre06.g277000' => 'cre', 'Cre09.g394050' => 'cre', 'CsaV3_3G007680' => 'csa', 'CsaV3_3G009710' => 'csa', 'CsaV3_3G034790' => 'csa', 'CsaV3_5G003750' => 'csa', 'CsaV3_6G036620' => 'csa', 'CSS0002288' => 'camsi', 'CSS0011250' => 'camsi', 'CSS0021619' => 'camsi', 'CSS0046701' => 'camsi', 'DCAR_006420' => 'dca', 'DCAR_006865' => 'dca', 'DCAR_008558' => 'dca', 'DCAR_028754' => 'dca', 'DCAR_028755' => 'dca', 'Dinv31218' => 'din', 'Dinv32371' => 'din', 'Dinv34250' => 'din', 'Dinv37156' => 'din', 'Dinv43704' => 'din', 'Duzib093G1811' => 'dzi', 'Duzib106G1622' => 'dzi', 'Duzib114G0504' => 'dzi', 'Duzib128G0338' => 'dzi', 'Duzib128G1577' => 'dzi', 'Duzib133G0104' => 'dzi', 'Duzib133G1080' => 'dzi', 'Duzib138G0324' => 'dzi', 'Duzib138G0394' => 'dzi', 'Duzib205G0122' => 'dzi', 'Duzib268G1020' => 'dzi', 'Duzib268G1359' => 'dzi', 'ECA232G3929' => 'eca', 'ECA236G2210' => 'eca', 'ECA236G2287' => 'eca', 'ECA240G4568' => 'eca', 'ECA247G0894' => 'eca', 'EL10Ac1g00200' => 'bvu', 'EL10Ac1g00886' => 'bvu', 'EL10As1g23091' => 'bvu', 'EL10As1g23092' => 'bvu', 'Eucgr.A01284' => 'egr', 'Eucgr.A01285' => 'egr', 'Eucgr.D02456' => 'egr', 'Eucgr.E00018' => 'egr', 'Eucgr.E01439' => 'egr', 'Eucgr.G02859' => 'egr', 'FAN01G0168' => 'fan', 'FAN01G0453' => 'fan', 'FAN01G2761' => 'fan', 'FAN02G1239' => 'fan', 'FAN03G0645' => 'fan', 'FAN03G2707' => 'fan', 'FAN03G2978' => 'fan', 'FAN04G0227' => 'fan', 'FAN06G0091' => 'fan', 'FAN06G1418' => 'fan', 'FAN06G1512' => 'fan', 'FAN06G1986' => 'fan', 'FAN06G2905' => 'fan', 'FAN06G4325' => 'fan', 'FAN08G0033' => 'fan', 'FAN09G0642' => 'fan', 'FAN10G1763' => 'fan', 'FAN10G2026' => 'fan', 'FAN10G2513' => 'fan', 'FAN10G3402' => 'fan', 'FAN10G3564' => 'fan', 'FAN10G3987' => 'fan', 'FAN13G1490' => 'fan', 'FAN14G5857' => 'fan', 'FAN18G1188' => 'fan', 'FvH4_5g00750' => 'fve', 'FvH4_6g13410' => 'fve', 'FvH4_7g11740' => 'fve', 'FvH4_7g17410' => 'fve', 'FvH4_7g18860' => 'fve', 'Glyma.01G099100' => 'gma', 'Glyma.01G142300' => 'gma', 'Glyma.03G025500' => 'gma', 'Glyma.03G069700' => 'gma', 'Glyma.03G260000' => 'gma', 'Glyma.09G269800' => 'gma', 'Glyma.10G208700' => 'gma', 'Glyma.18G220400' => 'gma', 'Glyma.20G182000' => 'gma', 'Gohir.A01G221726' => 'ghi', 'Gohir.A07G134600' => 'ghi', 'Gohir.A07G146000' => 'ghi', 'Gohir.A08G173900' => 'ghi', 'Gohir.A09G194900' => 'ghi', 'Gohir.A10G204100' => 'ghi', 'Gohir.A11G080600' => 'ghi', 'Gohir.A11G327500' => 'ghi', 'Gohir.A12G101800' => 'ghi', 'Gohir.D01G211200' => 'ghi', 'Gohir.D07G139200' => 'ghi', 'Gohir.D07G152100' => 'ghi', 'Gohir.D08G192600' => 'ghi', 'Gohir.D09G189200' => 'ghi', 'Gohir.D10G212000' => 'ghi', 'Gohir.D11G085200' => 'ghi', 'Gohir.D11G346400' => 'ghi', 'Gohir.D12G104800' => 'ghi', 'Gorai.001G151300' => 'gra', 'Gorai.001G174100' => 'gra', 'Gorai.002G257000' => 'gra', 'Gorai.004G202600' => 'gra', 'Gorai.007G090900' => 'gra', 'Gorai.007G376700' => 'gra', 'Gorai.008G114100' => 'gra', 'Gorai.011G237900' => 'gra', 'GSVIVG01005450001' => 'vvi', 'GSVIVG01016232001' => 'vvi', 'GSVIVG01026157001' => 'vvi', 'GSVIVG01027419001' => 'vvi', 'GSVIVG01027631001' => 'vvi', 'GSVIVG01034143001' => 'vvi', 'HanXRQChr03g0093921' => 'han', 'HanXRQChr04g0120001' => 'han', 'HanXRQChr04g0122561' => 'han', 'HanXRQChr09g0246851' => 'han', 'HanXRQChr10g0293311' => 'han', 'HanXRQChr13g0425231' => 'han', 'HanXRQChr16g0532571' => 'han', 'Haze_09050' => 'cav', 'Haze_15715' => 'cav', 'Haze_15716' => 'cav', 'Haze_16803' => 'cav', 'Haze_16850' => 'cav', 'Hma1.2p1_0301F.1_g118655' => 'hma', 'Hma1.2p1_0309F.1_g120590' => 'hma', 'Hma1.2p1_0936F.1_g238900' => 'hma', 'Hma1.2p1_3552F.1_g336740' => 'hma', 'HPP92_003520' => 'vpl', 'HPP92_006628' => 'vpl', 'HPP92_006645' => 'vpl', 'HPP92_014669' => 'vpl', 'HPP92_015077' => 'vpl', 'Hund16742' => 'sun', 'Hund17022' => 'sun', 'Lalb_Chr02g0152131' => 'lal', 'Lalb_Chr05g0225371' => 'lal', 'Lalb_Chr07g0189841' => 'lal', 'Lalb_Chr07g0192961' => 'lal', 'Lalb_Chr12g0208221' => 'lal', 'Lalb_Chr13g0291211' => 'lal', 'Lalb_Chr13g0291781' => 'lal', 'Lalb_Chr18g0044651' => 'lal', 'Lalb_Chr21g0313731' => 'lal', 'Lj1g0022533' => 'lja', 'Lj2A18T50' => 'lonja', 'Lj2A92G93' => 'lonja', 'Lj3A965T73' => 'lonja', 'Lj3g0000673' => 'lja', 'Lj3g0002666' => 'lja', 'Lj4g0016985' => 'lja', 'Lj5g0003625' => 'lja', 'Lj7A529G36' => 'lonja', 'Lj9A569T49' => 'lonja', 'Lj9A604T63' => 'lonja', 'Lsat_1_v5_gn_3_132060' => 'lsa', 'Lsat_1_v5_gn_4_68941' => 'lsa', 'Lsat_1_v5_gn_5_95580' => 'lsa', 'Lsat_1_v5_gn_7_161' => 'lsa', 'Lsat_1_v5_gn_7_7041' => 'lsa', 'Lsat_1_v5_gn_9_33481' => 'lsa', 'Lsat_1_v5_gn_9_68260' => 'lsa', 'Manes.01G073100' => 'mes', 'Manes.01G266300' => 'mes', 'Manes.02G033300' => 'mes', 'Manes.05G017900' => 'mes', 'Manes.05G046100' => 'mes', 'Manes.08G080900' => 'mes', 'Manes.10G049400' => 'mes', 'Mapoly0009s0186' => 'mpo', 'Mapoly0036s0118' => 'mpo', 'Mapoly0101s0046' => 'mpo', 'MBI04_g30218_MAGBIO' => 'mbi', 'MBI04_g35564_MAGBIO' => 'mbi', 'MBI12_g34011_MAGBIO' => 'mbi', 'MBI14_g04655_MAGBIO' => 'mbi', 'MCO07G653' => 'mco', 'MCO10G173' => 'mco', 'MD01G1087100' => 'mdo', 'MD01G1104200' => 'mdo', 'MD02G1205100' => 'mdo', 'MD04G1079200' => 'mdo', 'MD04G1131400' => 'mdo', 'MD07G1121600' => 'mdo', 'MD07G1157300' => 'mdo', 'MD07G1171000' => 'mdo', 'MD12G1144500' => 'mdo', 'Medtr1g094610' => 'mtr', 'Medtr4g021795' => 'mtr', 'Medtr4g023760' => 'mtr', 'Medtr7g118050' => 'mtr', 'MELO3C005582.2' => 'cme', 'MELO3C005989.2' => 'cme', 'MELO3C006192.2' => 'cme', 'MELO3C009248.2' => 'cme', 'MELO3C019817.2' => 'cme', 'Migut.B01625' => 'egut', 'Migut.B01915' => 'egut', 'Migut.F01721' => 'egut', 'Migut.J00314' => 'egut', 'MSTRG.20742' => 'ama', 'MSTRG.8134' => 'ama', 'Nitab4.5_0000096g0010' => 'nta', 'Nitab4.5_0000202g0030' => 'nta', 'Nitab4.5_0000216g0370' => 'nta', 'Nitab4.5_0000457g0230' => 'nta', 'Nitab4.5_0001702g0170' => 'nta', 'Nitab4.5_0003607g0010' => 'nta', 'Nitab4.5_0004917g0020' => 'nta', 'Nitab4.5_0007059g0010' => 'nta', 'Nitab4.5_0007184g0010' => 'nta', 'Nitab4.5_0007346g0020' => 'nta', 'Nn1g00410' => 'nnu', 'Nn1g01252' => 'nnu', 'Nn2g11168' => 'nnu', 'Nn2g13403' => 'nnu', 'Nn2g13760' => 'nnu', 'Nn4g26380' => 'nnu', 'Oeu000806.2' => 'oeu', 'Oeu005788.1' => 'oeu', 'Oeu006900.3' => 'oeu', 'Oeu007797.1' => 'oeu', 'Oeu011932.1' => 'oeu', 'Oeu022739.1' => 'oeu', 'Oeu037918.1' => 'oeu', 'Oeu055490.2' => 'oeu', 'Os01g0844400' => 'osa', 'Os02g0819100' => 'osa', 'Os03g0804300' => 'osa', 'Os05g0458000' => 'osa', 'Os07g0467800' => 'osa', 'Os12g0602200' => 'osa', 'Peaxi162Scf00013g03444' => 'pax', 'Peaxi162Scf00094g01120' => 'pax', 'Peaxi162Scf00191g01211' => 'pax', 'Peaxi162Scf00238g01110' => 'pax', 'Peaxi162Scf00330g00719' => 'pax', 'Peaxi162Scf00627g00018' => 'pax', 'PGR031G2686' => 'pgr', 'PGR042G0809' => 'pgr', 'PGR142G0193' => 'pgr', 'PGSC0003DMG400011066' => 'stu', 'PGSC0003DMG400012041' => 'stu', 'PGSC0003DMG400013678' => 'stu', 'PGSC0003DMG400023477' => 'stu', 'PGSC0003DMG400025956' => 'stu', 'PGSC0003DMG401019151' => 'stu', 'Phvul.006G116400' => 'pvu', 'Phvul.007G097300' => 'pvu', 'Phvul.010G015000' => 'pvu', 'Phvul.010G083900' => 'pvu', 'Potri.001G117100' => 'ptr', 'Potri.002G147300' => 'ptr', 'Potri.003G115600' => 'ptr', 'Potri.006G087400' => 'ptr', 'Potri.010G226100' => 'ptr', 'Potri.014G069200' => 'ptr', 'Potri.014G104000' => 'ptr', 'Potri.016G100200' => 'ptr', 'Pp3c10_20450' => 'ppa', 'Pp3c1_42400' => 'ppa', 'Pp3c3_24390' => 'ppa', 'Pp3c3_2860' => 'ppa', 'PRCOL_00003193' => 'pco', 'Prupe.2G144500' => 'ppe', 'Prupe.2G195700' => 'ppe', 'Prupe.2G209800' => 'ppe', 'Prupe.5G080000' => 'ppe', 'Prupe.6G257900' => 'ppe', 'Psat3g001160' => 'psa', 'Psat6g181880' => 'psa', 'Psat7g233720' => 'psa', 'PSO063G7587' => 'pso', 'PSO339G2145' => 'pso', 'PSO339G3369' => 'pso', 'PSO478G2747' => 'pso', 'PSO513G0140' => 'pso', 'PSO782G1614' => 'pso', 'PSO782G4889' => 'pso', 'PSO782G5485' => 'pso', 'PSO801G0241' => 'pso', 'QL07p048854' => 'qlo', 'QL08p046745' => 'qlo', 'QL08p052606' => 'qlo', 'QL08p053414' => 'qlo', 'QL08p054868' => 'qlo', 'RcHm_v2.0_Chr1g0350251' => 'rch', 'RcHm_v2.0_Chr1g0360851' => 'rch', 'RcHm_v2.0_Chr1g0362791' => 'rch', 'RcHm_v2.0_Chr3g0466281' => 'rch', 'RcHm_v2.0_Chr7g0201481' => 'rch', 'Rhsim01G0148600' => 'rsi', 'Rhsim05G0194400' => 'rsi', 'Rhsim07G0000700' => 'rsi', 'Rhsim07G0000800' => 'rsi', 'Rhsim07G0027900' => 'rsi', 'Rhsim09G0149500' => 'rsi', 'RhsimUnG0186900' => 'rsi', 'Sabra01G0089900' => 'sbr', 'Sabra02G0114700' => 'sbr', 'Sabra02G0116300' => 'sbr', 'Sabra03G0080100' => 'sbr', 'Sabra08G0024300' => 'sbr', 'Sabra10G0174300' => 'sbr', 'Sabra14G0048900' => 'sbr', 'Sabra14G0076500' => 'sbr', 'SalBow5G2513' => 'sbo', 'Sc01g0002300' => 'sci', 'Sc01g0004450' => 'sci', 'Sc06g0001680' => 'sci', 'Sc23g0003580' => 'sci', 'Sed0000913' => 'sed', 'Sed0001655' => 'sed', 'Sed0007745' => 'sed', 'Sed0010951' => 'sed', 'Sed0017599' => 'sed', 'Sed0021405' => 'sed', 'Sed0022810' => 'sed', 'SEGI_07099' => 'sgi', 'SEGI_11931' => 'sgi', 'SEGI_13187' => 'sgi', 'SEGI_29958' => 'sgi', 'SEGI_36351' => 'sgi', 'SGA_v2.0_scaffold126G33770' => 'sas', 'SGA_v2.0_scaffold153G37003' => 'sas', 'SGA_v2.0_scaffold2G01359' => 'sas', 'SGA_v2.0_scaffold5G03064' => 'sas', 'SGA_v2.0_scaffold95G28903' => 'sas', 'SHI12701' => 'shi', 'SHI26410' => 'shi', 'SHI38997' => 'shi', 'SHI53759' => 'shi', 'SHI53886' => 'shi', 'SHI54714' => 'shi', 'SMO011G0041' => 'smo', 'SMO146G0251' => 'smo', 'SMO160G0004' => 'smo', 'SMO174G0057' => 'smo', 'SMO244G0089' => 'smo', 'SMO296G0011' => 'smo', 'Solyc01g091280.3' => 'sly', 'Solyc05g047610.3' => 'sly', 'Solyc05g047640.3' => 'sly', 'Solyc05g055630.3' => 'sly', 'Solyc10g018160.2' => 'sly', 'Solyc10g084820.2' => 'sly', 'Solyc10g086565.2' => 'sly', 'Sopen01g037030' => 'spe', 'Sopen05g027920' => 'spe', 'Sopen05g034070' => 'spe', 'Sopen10g007260' => 'spe', 'Sopen10g034260' => 'spe', 'Sopen10g035950' => 'spe', 'Sp3g07710' => 'spa', 'Sp4g27420' => 'spa', 'Sp5g02450' => 'spa', 'Sp6g01280' => 'spa', 'Sp6g38480' => 'spa', 'Sp7g20780' => 'spa', 'TAR374G1413' => 'tar', 'TAR623G1777' => 'tar', 'TAR629G2370' => 'tar', 'TAR633G1759' => 'tar', 'TAR636G3387' => 'tar', 'THA.LOC104802447' => 'tha', 'THA.LOC104813916' => 'tha', 'THA.LOC104816423' => 'tha', 'THA.LOC104817246' => 'tha', 'THA.LOC104825895' => 'tha', 'Thecc.01G335200' => 'tca', 'Thecc.01G377400' => 'tca', 'Thecc.03G262200' => 'tca', 'Thecc.05G036800' => 'tca', 'Thecc.10G080500' => 'tca', 'Thecc.10G080800' => 'tca', 'Thhalv10001560m.g' => 'esa', 'Thhalv10006120m.g' => 'esa', 'Thhalv10014375m.g' => 'esa', 'Thhalv10021264m.g' => 'esa', 'Thhalv10028856m.g' => 'esa', 'TPR.G1914' => 'tpr', 'TPR.G4757' => 'tpr', 'TPR.G5595' => 'tpr', 'TWI14G0952' => 'twi', 'TWI14G1307' => 'twi', 'TWI38G2143' => 'twi', 'TWI59G0826' => 'twi', 'TWI77G0527' => 'twi', 'TWI81G0150' => 'twi', 'unitig_21.g21018' => 'ugi', 'unitig_26.g9725' => 'ugi', 'unitig_744.g24653' => 'ugi', 'unitig_749.g13778' => 'ugi', 'unitig_899.g15035' => 'ugi', 'vmacro04296' => 'vma', 'vmacro04852' => 'vma', 'vmacro13404' => 'vma', 'vmacro20169' => 'vma', 'vmacro21014' => 'vma', 'VMungo0331G0237' => 'vmu', 'VMungo0331G0706' => 'vmu', 'VMungo0331G1361' => 'vmu', 'VMungo0331G1489' => 'vmu', 'VMungo0540G1037' => 'vmu', 'VMungo0720G2487' => 'vmu', 'VMungo0720G2721' => 'vmu', 'Zm00001eb086860' => 'zma', 'Zm00001eb104760' => 'zma', 'Zm00001eb148220' => 'zma', 'Zm00001eb259030' => 'zma', 'Zm00001eb289590' => 'zma', 'Zm00001eb420150' => 'zma' ), 'gf_id' => 'HOM05D000968', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000968' ), 'data_identifier' => 'HOM05D000968', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000968', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p31690' => 'bna', 'A03p36040' => 'bna', 'A03p53730' => 'bna', 'A04p01410' => 'bna', 'A05p05420' => 'bna', 'A05p39630' => 'bna', 'A05p39640' => 'bna', 'A09p00970' => 'bna', 'A09p53060' => 'bna', 'A10p31890' => 'bna', 'Aa31LG10G15040' => 'aar', 'Aa31LG1G21090' => 'aar', 'Aa31LG1G26900' => 'aar', 'Aa31LG3G1820' => 'aar', 'Aa31LG5G1100' => 'aar', 'Aa31LG6G4740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2265' => 'aag', 'Actinidia07998' => 'ach', 'Actinidia11266' => 'ach', 'Actinidia12682' => 'ach', 'Actinidia26479' => 'ach', 'Actinidia31406' => 'ach', 'Actinidia32437' => 'ach', 'Actinidia38862' => 'ach', 'Ah.05g174230' => 'amhyb', 'Ah.05g179070' => 'amhyb', 'Ah.05g179090' => 'amhyb', 'Ah.12g059950' => 'amhyb', 'AL3G20480' => 'aly', 'AL4G44520' => 'aly', 'AL5G43110' => 'aly', 'AL6G13890' => 'aly', 'AL6G52620' => 'aly', 'AL7G30830' => 'aly', 'Aqoxy1G00899' => 'aox', 'Aqoxy5G04333' => 'aox', 'Aqoxy7G00641' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3IZ0NN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4EF6AW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W9P8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79GA3M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C43NQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFCU6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G95YVJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCHK29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LU1UG8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX91RN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGB4B1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8DA0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9H7JI' => 'arhy', 'AT3G09320' => 'ath', 'AT3G60800' => 'ath', 'AT4G00840' => 'ath', 'AT4G22750' => 'ath', 'AT5G04270' => 'ath', 'ATR0090G003' => 'atr', 'ATR0559G349' => 'atr', 'ATR0680G261' => 'atr', 'ATR0810G048' => 'atr', 'Atru.chr12.831' => 'acertr', 'Atru.chr5.303' => 'acertr', 'Atru.chr5.748' => 'acertr', 'Atru.chr8.1999' => 'acertr', 'Atru.chr9.1436' => 'acertr', 'AUR62004211' => 'cqu', 'AUR62004548' => 'cqu', 'AUR62013637' => 'cqu', 'AUR62022662' => 'cqu', 'AUR62025777' => 'cqu', 'AUR62042386' => 'cqu', 'BcaB01g02310' => 'bca', 'BcaB01g06062' => 'bca', 'BcaB02g08975' => 'bca', 'BcaB02g08980' => 'bca', 'BcaC01g04228' => 'bca', 'BcaC01g06830' => 'bca', 'BcaC02g10186' => 'bca', 'BcaC02g12214' => 'bca', 'BcaC04g24101' => 'bca', 'BcaC05g29520' => 'bca', 'BcaC05g29661' => 'bca', 'BcaC06g32130' => 'bca', 'BcaC06g32131' => 'bca', 'BcaC07g40601' => 'bca', 'BcaC07g42641' => 'bca', 'BcaNung01038' => 'bca', 'BcaNung01676' => 'bca', 'BcaNung02480' => 'bca', 'BcaNung07376' => 'bca', 'BolC3t16146H' => 'bol', 'BolC3t16637H' => 'bol', 'BolC4t22257H' => 'bol', 'BolC4t24728H' => 'bol', 'BolC5t34517H' => 'bol', 'BolC7t45703H' => 'bol', 'BolC8t51166H' => 'bol', 'BolC9t53038H' => 'bol', 'BolC9t60000H' => 'bol', 'BraA01t01345Z' => 'bra', 'BraA01t01346Z' => 'bra', 'BraA01t01348Z' => 'bra', 'BraA03t12347Z' => 'bra', 'BraA03t12775Z' => 'bra', 'BraA03t14439Z' => 'bra', 'BraA04t15860Z' => 'bra', 'BraA05t19511Z' => 'bra', 'BraA05t22746Z' => 'bra', 'BraA09t35767Z' => 'bra', 'BraA09t40732Z' => 'bra', 'BraA10t45233Z' => 'bra', 'C03p38720' => 'bna', 'C03p43680' => 'bna', 'C04p06350' => 'bna', 'C04p31800' => 'bna', 'C05p58680' => 'bna', 'C07p52110' => 'bna', 'C08p35760' => 'bna', 'C09p01050' => 'bna', 'C09p72600' => 'bna', 'CAN.G106.2' => 'can', 'CAN.G1482.1' => 'can', 'CAN.G324.12' => 'can', 'CAN.G388.20' => 'can', 'CAN.G412.7' => 'can', 'CAN.G694.32' => 'can', 'CAN.G92.12' => 'can', 'CANSAT11G2353' => 'cansat', 'CANSAT21G1398' => 'cansat', 'CANSAT56G2456' => 'cansat', 'CANSAT56G3031' => 'cansat', 'CANSAT56G4539' => 'cansat', 'CARHR083680' => 'chi', 'CARHR171190' => 'chi', 'CARHR209010' => 'chi', 'CARHR229680' => 'chi', 'CARHR249490' => 'chi', 'Carub.0003s0844' => 'cru', 'Carub.0005s2755' => 'cru', 'Carub.0006s0322' => 'cru', 'Carub.0006s3586' => 'cru', 'Carub.0007s1855' => 'cru', 'Ca_07808_v3' => 'car', 'Ca_09535_v3' => 'car', 'Ca_10548_v3' => 'car', 'Ca_19913_v3' => 'car', 'Ca_19916_v3' => 'car', 'Ca_19975_v3' => 'car', 'CBR_g22876' => 'cbr', 'CBR_g22879' => 'cbr', 'CBR_g38491' => 'cbr', 'CBR_g54185' => 'cbr', 'CBR_g54190' => 'cbr', 'Cc02_g11020' => 'ccan', 'Cc02_g23920' => 'ccan', 'Cc02_g39860' => 'ccan', 'Cc02_g39870' => 'ccan', 'Cc03_g06760' => 'ccan', 'Cc06_g02450' => 'ccan', 'Cc09_g09450' => 'ccan', 'CDE02G1959' => 'cde', 'CDE04G0600' => 'cde', 'CDE07G1996' => 'cde', 'CDE07G2078' => 'cde', 'CDE11G0611' => 'cde', 'Cfa001683' => 'cfa', 'Cfa001734' => 'cfa', 'Cfa001737' => 'cfa', 'Cfa003751' => 'cfa', 'Cfa012019' => 'cfa', 'Cfa017353' => 'cfa', 'Cfa017732' => 'cfa', 'Cfa022464' => 'cfa', 'Ciclev10012400m.g' => 'ccl', 'Ciclev10021242m.g' => 'ccl', 'Ciclev10021302m.g' => 'ccl', 'Ciclev10021463m.g' => 'ccl', 'Ciclev10032359m.g' => 'ccl', 'CiPaw.01G081000' => 'cil', 'CiPaw.01G262500' => 'cil', 'CiPaw.01G269800' => 'cil', 'CiPaw.02G168400' => 'cil', 'CiPaw.05G119500' => 'cil', 'CiPaw.11G147300' => 'cil', 'ClCG01G003630' => 'cla', 'ClCG05G000510' => 'cla', 'ClCG05G002300' => 'cla', 'ClCG08G007650' => 'cla', 'ClCG10G021250' => 'cla', 'COL.COLO4_06218' => 'col', 'COL.COLO4_12538' => 'col', 'COL.COLO4_14775' => 'col', 'COL.COLO4_23875' => 'col', 'Cpa.g.sc141.16' => 'cpa', 'Cpa.g.sc169.16' => 'cpa', 'Cpa.g.sc244.4' => 'cpa', 'Cpa.g.sc244.5' => 'cpa', 'Cpa.g.sc29.87' => 'cpa', 'Cpa.g.sc53.115' => 'cpa', 'Cre03.g207502' => 'cre', 'Cre06.g277000' => 'cre', 'Cre09.g394050' => 'cre', 'CsaV3_3G007680' => 'csa', 'CsaV3_3G009710' => 'csa', 'CsaV3_3G034790' => 'csa', 'CsaV3_5G003750' => 'csa', 'CsaV3_6G036620' => 'csa', 'CSS0002288' => 'camsi', 'CSS0011250' => 'camsi', 'CSS0021619' => 'camsi', 'CSS0046701' => 'camsi', 'DCAR_006420' => 'dca', 'DCAR_006865' => 'dca', 'DCAR_008558' => 'dca', 'DCAR_028754' => 'dca', 'DCAR_028755' => 'dca', 'Dinv31218' => 'din', 'Dinv32371' => 'din', 'Dinv34250' => 'din', 'Dinv37156' => 'din', 'Dinv43704' => 'din', 'Duzib093G1811' => 'dzi', 'Duzib106G1622' => 'dzi', 'Duzib114G0504' => 'dzi', 'Duzib128G0338' => 'dzi', 'Duzib128G1577' => 'dzi', 'Duzib133G0104' => 'dzi', 'Duzib133G1080' => 'dzi', 'Duzib138G0324' => 'dzi', 'Duzib138G0394' => 'dzi', 'Duzib205G0122' => 'dzi', 'Duzib268G1020' => 'dzi', 'Duzib268G1359' => 'dzi', 'ECA232G3929' => 'eca', 'ECA236G2210' => 'eca', 'ECA236G2287' => 'eca', 'ECA240G4568' => 'eca', 'ECA247G0894' => 'eca', 'EL10Ac1g00200' => 'bvu', 'EL10Ac1g00886' => 'bvu', 'EL10As1g23091' => 'bvu', 'EL10As1g23092' => 'bvu', 'Eucgr.A01284' => 'egr', 'Eucgr.A01285' => 'egr', 'Eucgr.D02456' => 'egr', 'Eucgr.E00018' => 'egr', 'Eucgr.E01439' => 'egr', 'Eucgr.G02859' => 'egr', 'FAN01G0168' => 'fan', 'FAN01G0453' => 'fan', 'FAN01G2761' => 'fan', 'FAN02G1239' => 'fan', 'FAN03G0645' => 'fan', 'FAN03G2707' => 'fan', 'FAN03G2978' => 'fan', 'FAN04G0227' => 'fan', 'FAN06G0091' => 'fan', 'FAN06G1418' => 'fan', 'FAN06G1512' => 'fan', 'FAN06G1986' => 'fan', 'FAN06G2905' => 'fan', 'FAN06G4325' => 'fan', 'FAN08G0033' => 'fan', 'FAN09G0642' => 'fan', 'FAN10G1763' => 'fan', 'FAN10G2026' => 'fan', 'FAN10G2513' => 'fan', 'FAN10G3402' => 'fan', 'FAN10G3564' => 'fan', 'FAN10G3987' => 'fan', 'FAN13G1490' => 'fan', 'FAN14G5857' => 'fan', 'FAN18G1188' => 'fan', 'FvH4_5g00750' => 'fve', 'FvH4_6g13410' => 'fve', 'FvH4_7g11740' => 'fve', 'FvH4_7g17410' => 'fve', 'FvH4_7g18860' => 'fve', 'Glyma.01G099100' => 'gma', 'Glyma.01G142300' => 'gma', 'Glyma.03G025500' => 'gma', 'Glyma.03G069700' => 'gma', 'Glyma.03G260000' => 'gma', 'Glyma.09G269800' => 'gma', 'Glyma.10G208700' => 'gma', 'Glyma.18G220400' => 'gma', 'Glyma.20G182000' => 'gma', 'Gohir.A01G221726' => 'ghi', 'Gohir.A07G134600' => 'ghi', 'Gohir.A07G146000' => 'ghi', 'Gohir.A08G173900' => 'ghi', 'Gohir.A09G194900' => 'ghi', 'Gohir.A10G204100' => 'ghi', 'Gohir.A11G080600' => 'ghi', 'Gohir.A11G327500' => 'ghi', 'Gohir.A12G101800' => 'ghi', 'Gohir.D01G211200' => 'ghi', 'Gohir.D07G139200' => 'ghi', 'Gohir.D07G152100' => 'ghi', 'Gohir.D08G192600' => 'ghi', 'Gohir.D09G189200' => 'ghi', 'Gohir.D10G212000' => 'ghi', 'Gohir.D11G085200' => 'ghi', 'Gohir.D11G346400' => 'ghi', 'Gohir.D12G104800' => 'ghi', 'Gorai.001G151300' => 'gra', 'Gorai.001G174100' => 'gra', 'Gorai.002G257000' => 'gra', 'Gorai.004G202600' => 'gra', 'Gorai.007G090900' => 'gra', 'Gorai.007G376700' => 'gra', 'Gorai.008G114100' => 'gra', 'Gorai.011G237900' => 'gra', 'GSVIVG01005450001' => 'vvi', 'GSVIVG01016232001' => 'vvi', 'GSVIVG01026157001' => 'vvi', 'GSVIVG01027419001' => 'vvi', 'GSVIVG01027631001' => 'vvi', 'GSVIVG01034143001' => 'vvi', 'HanXRQChr03g0093921' => 'han', 'HanXRQChr04g0120001' => 'han', 'HanXRQChr04g0122561' => 'han', 'HanXRQChr09g0246851' => 'han', 'HanXRQChr10g0293311' => 'han', 'HanXRQChr13g0425231' => 'han', 'HanXRQChr16g0532571' => 'han', 'Haze_09050' => 'cav', 'Haze_15715' => 'cav', 'Haze_15716' => 'cav', 'Haze_16803' => 'cav', 'Haze_16850' => 'cav', 'Hma1.2p1_0301F.1_g118655' => 'hma', 'Hma1.2p1_0309F.1_g120590' => 'hma', 'Hma1.2p1_0936F.1_g238900' => 'hma', 'Hma1.2p1_3552F.1_g336740' => 'hma', 'HPP92_003520' => 'vpl', 'HPP92_006628' => 'vpl', 'HPP92_006645' => 'vpl', 'HPP92_014669' => 'vpl', 'HPP92_015077' => 'vpl', 'Hund16742' => 'sun', 'Hund17022' => 'sun', 'Lalb_Chr02g0152131' => 'lal', 'Lalb_Chr05g0225371' => 'lal', 'Lalb_Chr07g0189841' => 'lal', 'Lalb_Chr07g0192961' => 'lal', 'Lalb_Chr12g0208221' => 'lal', 'Lalb_Chr13g0291211' => 'lal', 'Lalb_Chr13g0291781' => 'lal', 'Lalb_Chr18g0044651' => 'lal', 'Lalb_Chr21g0313731' => 'lal', 'Lj1g0022533' => 'lja', 'Lj2A18T50' => 'lonja', 'Lj2A92G93' => 'lonja', 'Lj3A965T73' => 'lonja', 'Lj3g0000673' => 'lja', 'Lj3g0002666' => 'lja', 'Lj4g0016985' => 'lja', 'Lj5g0003625' => 'lja', 'Lj7A529G36' => 'lonja', 'Lj9A569T49' => 'lonja', 'Lj9A604T63' => 'lonja', 'Lsat_1_v5_gn_3_132060' => 'lsa', 'Lsat_1_v5_gn_4_68941' => 'lsa', 'Lsat_1_v5_gn_5_95580' => 'lsa', 'Lsat_1_v5_gn_7_161' => 'lsa', 'Lsat_1_v5_gn_7_7041' => 'lsa', 'Lsat_1_v5_gn_9_33481' => 'lsa', 'Lsat_1_v5_gn_9_68260' => 'lsa', 'Manes.01G073100' => 'mes', 'Manes.01G266300' => 'mes', 'Manes.02G033300' => 'mes', 'Manes.05G017900' => 'mes', 'Manes.05G046100' => 'mes', 'Manes.08G080900' => 'mes', 'Manes.10G049400' => 'mes', 'Mapoly0009s0186' => 'mpo', 'Mapoly0036s0118' => 'mpo', 'Mapoly0101s0046' => 'mpo', 'MBI04_g30218_MAGBIO' => 'mbi', 'MBI04_g35564_MAGBIO' => 'mbi', 'MBI12_g34011_MAGBIO' => 'mbi', 'MBI14_g04655_MAGBIO' => 'mbi', 'MCO07G653' => 'mco', 'MCO10G173' => 'mco', 'MD01G1087100' => 'mdo', 'MD01G1104200' => 'mdo', 'MD02G1205100' => 'mdo', 'MD04G1079200' => 'mdo', 'MD04G1131400' => 'mdo', 'MD07G1121600' => 'mdo', 'MD07G1157300' => 'mdo', 'MD07G1171000' => 'mdo', 'MD12G1144500' => 'mdo', 'Medtr1g094610' => 'mtr', 'Medtr4g021795' => 'mtr', 'Medtr4g023760' => 'mtr', 'Medtr7g118050' => 'mtr', 'MELO3C005582.2' => 'cme', 'MELO3C005989.2' => 'cme', 'MELO3C006192.2' => 'cme', 'MELO3C009248.2' => 'cme', 'MELO3C019817.2' => 'cme', 'Migut.B01625' => 'egut', 'Migut.B01915' => 'egut', 'Migut.F01721' => 'egut', 'Migut.J00314' => 'egut', 'MSTRG.20742' => 'ama', 'MSTRG.8134' => 'ama', 'Nitab4.5_0000096g0010' => 'nta', 'Nitab4.5_0000202g0030' => 'nta', 'Nitab4.5_0000216g0370' => 'nta', 'Nitab4.5_0000457g0230' => 'nta', 'Nitab4.5_0001702g0170' => 'nta', 'Nitab4.5_0003607g0010' => 'nta', 'Nitab4.5_0004917g0020' => 'nta', 'Nitab4.5_0007059g0010' => 'nta', 'Nitab4.5_0007184g0010' => 'nta', 'Nitab4.5_0007346g0020' => 'nta', 'Nn1g00410' => 'nnu', 'Nn1g01252' => 'nnu', 'Nn2g11168' => 'nnu', 'Nn2g13403' => 'nnu', 'Nn2g13760' => 'nnu', 'Nn4g26380' => 'nnu', 'Oeu000806.2' => 'oeu', 'Oeu005788.1' => 'oeu', 'Oeu006900.3' => 'oeu', 'Oeu007797.1' => 'oeu', 'Oeu011932.1' => 'oeu', 'Oeu022739.1' => 'oeu', 'Oeu037918.1' => 'oeu', 'Oeu055490.2' => 'oeu', 'Os01g0844400' => 'osa', 'Os02g0819100' => 'osa', 'Os03g0804300' => 'osa', 'Os05g0458000' => 'osa', 'Os07g0467800' => 'osa', 'Os12g0602200' => 'osa', 'Peaxi162Scf00013g03444' => 'pax', 'Peaxi162Scf00094g01120' => 'pax', 'Peaxi162Scf00191g01211' => 'pax', 'Peaxi162Scf00238g01110' => 'pax', 'Peaxi162Scf00330g00719' => 'pax', 'Peaxi162Scf00627g00018' => 'pax', 'PGR031G2686' => 'pgr', 'PGR042G0809' => 'pgr', 'PGR142G0193' => 'pgr', 'PGSC0003DMG400011066' => 'stu', 'PGSC0003DMG400012041' => 'stu', 'PGSC0003DMG400013678' => 'stu', 'PGSC0003DMG400023477' => 'stu', 'PGSC0003DMG400025956' => 'stu', 'PGSC0003DMG401019151' => 'stu', 'Phvul.006G116400' => 'pvu', 'Phvul.007G097300' => 'pvu', 'Phvul.010G015000' => 'pvu', 'Phvul.010G083900' => 'pvu', 'Potri.001G117100' => 'ptr', 'Potri.002G147300' => 'ptr', 'Potri.003G115600' => 'ptr', 'Potri.006G087400' => 'ptr', 'Potri.010G226100' => 'ptr', 'Potri.014G069200' => 'ptr', 'Potri.014G104000' => 'ptr', 'Potri.016G100200' => 'ptr', 'Pp3c10_20450' => 'ppa', 'Pp3c1_42400' => 'ppa', 'Pp3c3_24390' => 'ppa', 'Pp3c3_2860' => 'ppa', 'PRCOL_00003193' => 'pco', 'Prupe.2G144500' => 'ppe', 'Prupe.2G195700' => 'ppe', 'Prupe.2G209800' => 'ppe', 'Prupe.5G080000' => 'ppe', 'Prupe.6G257900' => 'ppe', 'Psat3g001160' => 'psa', 'Psat6g181880' => 'psa', 'Psat7g233720' => 'psa', 'PSO063G7587' => 'pso', 'PSO339G2145' => 'pso', 'PSO339G3369' => 'pso', 'PSO478G2747' => 'pso', 'PSO513G0140' => 'pso', 'PSO782G1614' => 'pso', 'PSO782G4889' => 'pso', 'PSO782G5485' => 'pso', 'PSO801G0241' => 'pso', 'QL07p048854' => 'qlo', 'QL08p046745' => 'qlo', 'QL08p052606' => 'qlo', 'QL08p053414' => 'qlo', 'QL08p054868' => 'qlo', 'RcHm_v2.0_Chr1g0350251' => 'rch', 'RcHm_v2.0_Chr1g0360851' => 'rch', 'RcHm_v2.0_Chr1g0362791' => 'rch', 'RcHm_v2.0_Chr3g0466281' => 'rch', 'RcHm_v2.0_Chr7g0201481' => 'rch', 'Rhsim01G0148600' => 'rsi', 'Rhsim05G0194400' => 'rsi', 'Rhsim07G0000700' => 'rsi', 'Rhsim07G0000800' => 'rsi', 'Rhsim07G0027900' => 'rsi', 'Rhsim09G0149500' => 'rsi', 'RhsimUnG0186900' => 'rsi', 'Sabra01G0089900' => 'sbr', 'Sabra02G0114700' => 'sbr', 'Sabra02G0116300' => 'sbr', 'Sabra03G0080100' => 'sbr', 'Sabra08G0024300' => 'sbr', 'Sabra10G0174300' => 'sbr', 'Sabra14G0048900' => 'sbr', 'Sabra14G0076500' => 'sbr', 'SalBow5G2513' => 'sbo', 'Sc01g0002300' => 'sci', 'Sc01g0004450' => 'sci', 'Sc06g0001680' => 'sci', 'Sc23g0003580' => 'sci', 'Sed0000913' => 'sed', 'Sed0001655' => 'sed', 'Sed0007745' => 'sed', 'Sed0010951' => 'sed', 'Sed0017599' => 'sed', 'Sed0021405' => 'sed', 'Sed0022810' => 'sed', 'SEGI_07099' => 'sgi', 'SEGI_11931' => 'sgi', 'SEGI_13187' => 'sgi', 'SEGI_29958' => 'sgi', 'SEGI_36351' => 'sgi', 'SGA_v2.0_scaffold126G33770' => 'sas', 'SGA_v2.0_scaffold153G37003' => 'sas', 'SGA_v2.0_scaffold2G01359' => 'sas', 'SGA_v2.0_scaffold5G03064' => 'sas', 'SGA_v2.0_scaffold95G28903' => 'sas', 'SHI12701' => 'shi', 'SHI26410' => 'shi', 'SHI38997' => 'shi', 'SHI53759' => 'shi', 'SHI53886' => 'shi', 'SHI54714' => 'shi', 'SMO011G0041' => 'smo', 'SMO146G0251' => 'smo', 'SMO160G0004' => 'smo', 'SMO174G0057' => 'smo', 'SMO244G0089' => 'smo', 'SMO296G0011' => 'smo', 'Solyc01g091280.3' => 'sly', 'Solyc05g047610.3' => 'sly', 'Solyc05g047640.3' => 'sly', 'Solyc05g055630.3' => 'sly', 'Solyc10g018160.2' => 'sly', 'Solyc10g084820.2' => 'sly', 'Solyc10g086565.2' => 'sly', 'Sopen01g037030' => 'spe', 'Sopen05g027920' => 'spe', 'Sopen05g034070' => 'spe', 'Sopen10g007260' => 'spe', 'Sopen10g034260' => 'spe', 'Sopen10g035950' => 'spe', 'Sp3g07710' => 'spa', 'Sp4g27420' => 'spa', 'Sp5g02450' => 'spa', 'Sp6g01280' => 'spa', 'Sp6g38480' => 'spa', 'Sp7g20780' => 'spa', 'TAR374G1413' => 'tar', 'TAR623G1777' => 'tar', 'TAR629G2370' => 'tar', 'TAR633G1759' => 'tar', 'TAR636G3387' => 'tar', 'THA.LOC104802447' => 'tha', 'THA.LOC104813916' => 'tha', 'THA.LOC104816423' => 'tha', 'THA.LOC104817246' => 'tha', 'THA.LOC104825895' => 'tha', 'Thecc.01G335200' => 'tca', 'Thecc.01G377400' => 'tca', 'Thecc.03G262200' => 'tca', 'Thecc.05G036800' => 'tca', 'Thecc.10G080500' => 'tca', 'Thecc.10G080800' => 'tca', 'Thhalv10001560m.g' => 'esa', 'Thhalv10006120m.g' => 'esa', 'Thhalv10014375m.g' => 'esa', 'Thhalv10021264m.g' => 'esa', 'Thhalv10028856m.g' => 'esa', 'TPR.G1914' => 'tpr', 'TPR.G4757' => 'tpr', 'TPR.G5595' => 'tpr', 'TWI14G0952' => 'twi', 'TWI14G1307' => 'twi', 'TWI38G2143' => 'twi', 'TWI59G0826' => 'twi', 'TWI77G0527' => 'twi', 'TWI81G0150' => 'twi', 'unitig_21.g21018' => 'ugi', 'unitig_26.g9725' => 'ugi', 'unitig_744.g24653' => 'ugi', 'unitig_749.g13778' => 'ugi', 'unitig_899.g15035' => 'ugi', 'vmacro04296' => 'vma', 'vmacro04852' => 'vma', 'vmacro13404' => 'vma', 'vmacro20169' => 'vma', 'vmacro21014' => 'vma', 'VMungo0331G0237' => 'vmu', 'VMungo0331G0706' => 'vmu', 'VMungo0331G1361' => 'vmu', 'VMungo0331G1489' => 'vmu', 'VMungo0540G1037' => 'vmu', 'VMungo0720G2487' => 'vmu', 'VMungo0720G2721' => 'vmu', 'Zm00001eb086860' => 'zma', 'Zm00001eb104760' => 'zma', 'Zm00001eb148220' => 'zma', 'Zm00001eb259030' => 'zma', 'Zm00001eb289590' => 'zma', 'Zm00001eb420150' => 'zma' ) $gf_id = 'HOM05D000968' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000968' ) $data_identifier = 'HOM05D000968' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 19, 'bol' => (int) 9, 'bra' => (int) 12, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 5, 'ccan' => (int) 7, 'cde' => (int) 5, 'cfa' => (int) 8, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 4, 'dca' => (int) 5, 'din' => (int) 5, 'dzi' => (int) 12, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 25, 'fve' => (int) 5, 'gma' => (int) 9, 'ghi' => (int) 18, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 7, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 5, 'sun' => (int) 2, 'lal' => (int) 9, 'lja' => (int) 5, 'lonja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 9, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 2, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 3, 'stu' => (int) 6, 'pvu' => (int) 4, 'ptr' => (int) 8, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 3, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 1, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 5, 'sas' => (int) 5, 'shi' => (int) 6, 'smo' => (int) 6, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 3, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420150' $species_info = array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ) $local_species = 'dzi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000968', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p31690' => 'bna', 'A03p36040' => 'bna', 'A03p53730' => 'bna', 'A04p01410' => 'bna', 'A05p05420' => 'bna', 'A05p39630' => 'bna', 'A05p39640' => 'bna', 'A09p00970' => 'bna', 'A09p53060' => 'bna', 'A10p31890' => 'bna', 'Aa31LG10G15040' => 'aar', 'Aa31LG1G21090' => 'aar', 'Aa31LG1G26900' => 'aar', 'Aa31LG3G1820' => 'aar', 'Aa31LG5G1100' => 'aar', 'Aa31LG6G4740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2265' => 'aag', 'Actinidia07998' => 'ach', 'Actinidia11266' => 'ach', 'Actinidia12682' => 'ach', 'Actinidia26479' => 'ach', 'Actinidia31406' => 'ach', 'Actinidia32437' => 'ach', 'Actinidia38862' => 'ach', 'Ah.05g174230' => 'amhyb', 'Ah.05g179070' => 'amhyb', 'Ah.05g179090' => 'amhyb', 'Ah.12g059950' => 'amhyb', 'AL3G20480' => 'aly', 'AL4G44520' => 'aly', 'AL5G43110' => 'aly', 'AL6G13890' => 'aly', 'AL6G52620' => 'aly', 'AL7G30830' => 'aly', 'Aqoxy1G00899' => 'aox', 'Aqoxy5G04333' => 'aox', 'Aqoxy7G00641' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3IZ0NN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4EF6AW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W9P8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79GA3M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C43NQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFCU6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G95YVJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCHK29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LU1UG8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX91RN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGB4B1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8DA0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9H7JI' => 'arhy', 'AT3G09320' => 'ath', 'AT3G60800' => 'ath', 'AT4G00840' => 'ath', 'AT4G22750' => 'ath', 'AT5G04270' => 'ath', 'ATR0090G003' => 'atr', 'ATR0559G349' => 'atr', 'ATR0680G261' => 'atr', 'ATR0810G048' => 'atr', 'Atru.chr12.831' => 'acertr', 'Atru.chr5.303' => 'acertr', 'Atru.chr5.748' => 'acertr', 'Atru.chr8.1999' => 'acertr', 'Atru.chr9.1436' => 'acertr', 'AUR62004211' => 'cqu', 'AUR62004548' => 'cqu', 'AUR62013637' => 'cqu', 'AUR62022662' => 'cqu', 'AUR62025777' => 'cqu', 'AUR62042386' => 'cqu', 'BcaB01g02310' => 'bca', 'BcaB01g06062' => 'bca', 'BcaB02g08975' => 'bca', 'BcaB02g08980' => 'bca', 'BcaC01g04228' => 'bca', 'BcaC01g06830' => 'bca', 'BcaC02g10186' => 'bca', 'BcaC02g12214' => 'bca', 'BcaC04g24101' => 'bca', 'BcaC05g29520' => 'bca', 'BcaC05g29661' => 'bca', 'BcaC06g32130' => 'bca', 'BcaC06g32131' => 'bca', 'BcaC07g40601' => 'bca', 'BcaC07g42641' => 'bca', 'BcaNung01038' => 'bca', 'BcaNung01676' => 'bca', 'BcaNung02480' => 'bca', 'BcaNung07376' => 'bca', 'BolC3t16146H' => 'bol', 'BolC3t16637H' => 'bol', 'BolC4t22257H' => 'bol', 'BolC4t24728H' => 'bol', 'BolC5t34517H' => 'bol', 'BolC7t45703H' => 'bol', 'BolC8t51166H' => 'bol', 'BolC9t53038H' => 'bol', 'BolC9t60000H' => 'bol', 'BraA01t01345Z' => 'bra', 'BraA01t01346Z' => 'bra', 'BraA01t01348Z' => 'bra', 'BraA03t12347Z' => 'bra', 'BraA03t12775Z' => 'bra', 'BraA03t14439Z' => 'bra', 'BraA04t15860Z' => 'bra', 'BraA05t19511Z' => 'bra', 'BraA05t22746Z' => 'bra', 'BraA09t35767Z' => 'bra', 'BraA09t40732Z' => 'bra', 'BraA10t45233Z' => 'bra', 'C03p38720' => 'bna', 'C03p43680' => 'bna', 'C04p06350' => 'bna', 'C04p31800' => 'bna', 'C05p58680' => 'bna', 'C07p52110' => 'bna', 'C08p35760' => 'bna', 'C09p01050' => 'bna', 'C09p72600' => 'bna', 'CAN.G106.2' => 'can', 'CAN.G1482.1' => 'can', 'CAN.G324.12' => 'can', 'CAN.G388.20' => 'can', 'CAN.G412.7' => 'can', 'CAN.G694.32' => 'can', 'CAN.G92.12' => 'can', 'CANSAT11G2353' => 'cansat', 'CANSAT21G1398' => 'cansat', 'CANSAT56G2456' => 'cansat', 'CANSAT56G3031' => 'cansat', 'CANSAT56G4539' => 'cansat', 'CARHR083680' => 'chi', 'CARHR171190' => 'chi', 'CARHR209010' => 'chi', 'CARHR229680' => 'chi', 'CARHR249490' => 'chi', 'Carub.0003s0844' => 'cru', 'Carub.0005s2755' => 'cru', 'Carub.0006s0322' => 'cru', 'Carub.0006s3586' => 'cru', 'Carub.0007s1855' => 'cru', 'Ca_07808_v3' => 'car', 'Ca_09535_v3' => 'car', 'Ca_10548_v3' => 'car', 'Ca_19913_v3' => 'car', 'Ca_19916_v3' => 'car', 'Ca_19975_v3' => 'car', 'CBR_g22876' => 'cbr', 'CBR_g22879' => 'cbr', 'CBR_g38491' => 'cbr', 'CBR_g54185' => 'cbr', 'CBR_g54190' => 'cbr', 'Cc02_g11020' => 'ccan', 'Cc02_g23920' => 'ccan', 'Cc02_g39860' => 'ccan', 'Cc02_g39870' => 'ccan', 'Cc03_g06760' => 'ccan', 'Cc06_g02450' => 'ccan', 'Cc09_g09450' => 'ccan', 'CDE02G1959' => 'cde', 'CDE04G0600' => 'cde', 'CDE07G1996' => 'cde', 'CDE07G2078' => 'cde', 'CDE11G0611' => 'cde', 'Cfa001683' => 'cfa', 'Cfa001734' => 'cfa', 'Cfa001737' => 'cfa', 'Cfa003751' => 'cfa', 'Cfa012019' => 'cfa', 'Cfa017353' => 'cfa', 'Cfa017732' => 'cfa', 'Cfa022464' => 'cfa', 'Ciclev10012400m.g' => 'ccl', 'Ciclev10021242m.g' => 'ccl', 'Ciclev10021302m.g' => 'ccl', 'Ciclev10021463m.g' => 'ccl', 'Ciclev10032359m.g' => 'ccl', 'CiPaw.01G081000' => 'cil', 'CiPaw.01G262500' => 'cil', 'CiPaw.01G269800' => 'cil', 'CiPaw.02G168400' => 'cil', 'CiPaw.05G119500' => 'cil', 'CiPaw.11G147300' => 'cil', 'ClCG01G003630' => 'cla', 'ClCG05G000510' => 'cla', 'ClCG05G002300' => 'cla', 'ClCG08G007650' => 'cla', 'ClCG10G021250' => 'cla', 'COL.COLO4_06218' => 'col', 'COL.COLO4_12538' => 'col', 'COL.COLO4_14775' => 'col', 'COL.COLO4_23875' => 'col', 'Cpa.g.sc141.16' => 'cpa', 'Cpa.g.sc169.16' => 'cpa', 'Cpa.g.sc244.4' => 'cpa', 'Cpa.g.sc244.5' => 'cpa', 'Cpa.g.sc29.87' => 'cpa', 'Cpa.g.sc53.115' => 'cpa', 'Cre03.g207502' => 'cre', 'Cre06.g277000' => 'cre', 'Cre09.g394050' => 'cre', 'CsaV3_3G007680' => 'csa', 'CsaV3_3G009710' => 'csa', 'CsaV3_3G034790' => 'csa', 'CsaV3_5G003750' => 'csa', 'CsaV3_6G036620' => 'csa', 'CSS0002288' => 'camsi', 'CSS0011250' => 'camsi', 'CSS0021619' => 'camsi', 'CSS0046701' => 'camsi', 'DCAR_006420' => 'dca', 'DCAR_006865' => 'dca', 'DCAR_008558' => 'dca', 'DCAR_028754' => 'dca', 'DCAR_028755' => 'dca', 'Dinv31218' => 'din', 'Dinv32371' => 'din', 'Dinv34250' => 'din', 'Dinv37156' => 'din', 'Dinv43704' => 'din', 'Duzib093G1811' => 'dzi', 'Duzib106G1622' => 'dzi', 'Duzib114G0504' => 'dzi', 'Duzib128G0338' => 'dzi', 'Duzib128G1577' => 'dzi', 'Duzib133G0104' => 'dzi', 'Duzib133G1080' => 'dzi', 'Duzib138G0324' => 'dzi', 'Duzib138G0394' => 'dzi', 'Duzib205G0122' => 'dzi', 'Duzib268G1020' => 'dzi', 'Duzib268G1359' => 'dzi', 'ECA232G3929' => 'eca', 'ECA236G2210' => 'eca', 'ECA236G2287' => 'eca', 'ECA240G4568' => 'eca', 'ECA247G0894' => 'eca', 'EL10Ac1g00200' => 'bvu', 'EL10Ac1g00886' => 'bvu', 'EL10As1g23091' => 'bvu', 'EL10As1g23092' => 'bvu', 'Eucgr.A01284' => 'egr', 'Eucgr.A01285' => 'egr', 'Eucgr.D02456' => 'egr', 'Eucgr.E00018' => 'egr', 'Eucgr.E01439' => 'egr', 'Eucgr.G02859' => 'egr', 'FAN01G0168' => 'fan', 'FAN01G0453' => 'fan', 'FAN01G2761' => 'fan', 'FAN02G1239' => 'fan', 'FAN03G0645' => 'fan', 'FAN03G2707' => 'fan', 'FAN03G2978' => 'fan', 'FAN04G0227' => 'fan', 'FAN06G0091' => 'fan', 'FAN06G1418' => 'fan', 'FAN06G1512' => 'fan', 'FAN06G1986' => 'fan', 'FAN06G2905' => 'fan', 'FAN06G4325' => 'fan', 'FAN08G0033' => 'fan', 'FAN09G0642' => 'fan', 'FAN10G1763' => 'fan', 'FAN10G2026' => 'fan', 'FAN10G2513' => 'fan', 'FAN10G3402' => 'fan', 'FAN10G3564' => 'fan', 'FAN10G3987' => 'fan', 'FAN13G1490' => 'fan', 'FAN14G5857' => 'fan', 'FAN18G1188' => 'fan', 'FvH4_5g00750' => 'fve', 'FvH4_6g13410' => 'fve', 'FvH4_7g11740' => 'fve', 'FvH4_7g17410' => 'fve', 'FvH4_7g18860' => 'fve', 'Glyma.01G099100' => 'gma', 'Glyma.01G142300' => 'gma', 'Glyma.03G025500' => 'gma', 'Glyma.03G069700' => 'gma', 'Glyma.03G260000' => 'gma', 'Glyma.09G269800' => 'gma', 'Glyma.10G208700' => 'gma', 'Glyma.18G220400' => 'gma', 'Glyma.20G182000' => 'gma', 'Gohir.A01G221726' => 'ghi', 'Gohir.A07G134600' => 'ghi', 'Gohir.A07G146000' => 'ghi', 'Gohir.A08G173900' => 'ghi', 'Gohir.A09G194900' => 'ghi', 'Gohir.A10G204100' => 'ghi', 'Gohir.A11G080600' => 'ghi', 'Gohir.A11G327500' => 'ghi', 'Gohir.A12G101800' => 'ghi', 'Gohir.D01G211200' => 'ghi', 'Gohir.D07G139200' => 'ghi', 'Gohir.D07G152100' => 'ghi', 'Gohir.D08G192600' => 'ghi', 'Gohir.D09G189200' => 'ghi', 'Gohir.D10G212000' => 'ghi', 'Gohir.D11G085200' => 'ghi', 'Gohir.D11G346400' => 'ghi', 'Gohir.D12G104800' => 'ghi', 'Gorai.001G151300' => 'gra', 'Gorai.001G174100' => 'gra', 'Gorai.002G257000' => 'gra', 'Gorai.004G202600' => 'gra', 'Gorai.007G090900' => 'gra', 'Gorai.007G376700' => 'gra', 'Gorai.008G114100' => 'gra', 'Gorai.011G237900' => 'gra', 'GSVIVG01005450001' => 'vvi', 'GSVIVG01016232001' => 'vvi', 'GSVIVG01026157001' => 'vvi', 'GSVIVG01027419001' => 'vvi', 'GSVIVG01027631001' => 'vvi', 'GSVIVG01034143001' => 'vvi', 'HanXRQChr03g0093921' => 'han', 'HanXRQChr04g0120001' => 'han', 'HanXRQChr04g0122561' => 'han', 'HanXRQChr09g0246851' => 'han', 'HanXRQChr10g0293311' => 'han', 'HanXRQChr13g0425231' => 'han', 'HanXRQChr16g0532571' => 'han', 'Haze_09050' => 'cav', 'Haze_15715' => 'cav', 'Haze_15716' => 'cav', 'Haze_16803' => 'cav', 'Haze_16850' => 'cav', 'Hma1.2p1_0301F.1_g118655' => 'hma', 'Hma1.2p1_0309F.1_g120590' => 'hma', 'Hma1.2p1_0936F.1_g238900' => 'hma', 'Hma1.2p1_3552F.1_g336740' => 'hma', 'HPP92_003520' => 'vpl', 'HPP92_006628' => 'vpl', 'HPP92_006645' => 'vpl', 'HPP92_014669' => 'vpl', 'HPP92_015077' => 'vpl', 'Hund16742' => 'sun', 'Hund17022' => 'sun', 'Lalb_Chr02g0152131' => 'lal', 'Lalb_Chr05g0225371' => 'lal', 'Lalb_Chr07g0189841' => 'lal', 'Lalb_Chr07g0192961' => 'lal', 'Lalb_Chr12g0208221' => 'lal', 'Lalb_Chr13g0291211' => 'lal', 'Lalb_Chr13g0291781' => 'lal', 'Lalb_Chr18g0044651' => 'lal', 'Lalb_Chr21g0313731' => 'lal', 'Lj1g0022533' => 'lja', 'Lj2A18T50' => 'lonja', 'Lj2A92G93' => 'lonja', 'Lj3A965T73' => 'lonja', 'Lj3g0000673' => 'lja', 'Lj3g0002666' => 'lja', 'Lj4g0016985' => 'lja', 'Lj5g0003625' => 'lja', 'Lj7A529G36' => 'lonja', 'Lj9A569T49' => 'lonja', 'Lj9A604T63' => 'lonja', 'Lsat_1_v5_gn_3_132060' => 'lsa', 'Lsat_1_v5_gn_4_68941' => 'lsa', 'Lsat_1_v5_gn_5_95580' => 'lsa', 'Lsat_1_v5_gn_7_161' => 'lsa', 'Lsat_1_v5_gn_7_7041' => 'lsa', 'Lsat_1_v5_gn_9_33481' => 'lsa', 'Lsat_1_v5_gn_9_68260' => 'lsa', 'Manes.01G073100' => 'mes', 'Manes.01G266300' => 'mes', 'Manes.02G033300' => 'mes', 'Manes.05G017900' => 'mes', 'Manes.05G046100' => 'mes', 'Manes.08G080900' => 'mes', 'Manes.10G049400' => 'mes', 'Mapoly0009s0186' => 'mpo', 'Mapoly0036s0118' => 'mpo', 'Mapoly0101s0046' => 'mpo', 'MBI04_g30218_MAGBIO' => 'mbi', 'MBI04_g35564_MAGBIO' => 'mbi', 'MBI12_g34011_MAGBIO' => 'mbi', 'MBI14_g04655_MAGBIO' => 'mbi', 'MCO07G653' => 'mco', 'MCO10G173' => 'mco', 'MD01G1087100' => 'mdo', 'MD01G1104200' => 'mdo', 'MD02G1205100' => 'mdo', 'MD04G1079200' => 'mdo', 'MD04G1131400' => 'mdo', 'MD07G1121600' => 'mdo', 'MD07G1157300' => 'mdo', 'MD07G1171000' => 'mdo', 'MD12G1144500' => 'mdo', 'Medtr1g094610' => 'mtr', 'Medtr4g021795' => 'mtr', 'Medtr4g023760' => 'mtr', 'Medtr7g118050' => 'mtr', 'MELO3C005582.2' => 'cme', 'MELO3C005989.2' => 'cme', 'MELO3C006192.2' => 'cme', 'MELO3C009248.2' => 'cme', 'MELO3C019817.2' => 'cme', 'Migut.B01625' => 'egut', 'Migut.B01915' => 'egut', 'Migut.F01721' => 'egut', 'Migut.J00314' => 'egut', 'MSTRG.20742' => 'ama', 'MSTRG.8134' => 'ama', 'Nitab4.5_0000096g0010' => 'nta', 'Nitab4.5_0000202g0030' => 'nta', 'Nitab4.5_0000216g0370' => 'nta', 'Nitab4.5_0000457g0230' => 'nta', 'Nitab4.5_0001702g0170' => 'nta', 'Nitab4.5_0003607g0010' => 'nta', 'Nitab4.5_0004917g0020' => 'nta', 'Nitab4.5_0007059g0010' => 'nta', 'Nitab4.5_0007184g0010' => 'nta', 'Nitab4.5_0007346g0020' => 'nta', 'Nn1g00410' => 'nnu', 'Nn1g01252' => 'nnu', 'Nn2g11168' => 'nnu', 'Nn2g13403' => 'nnu', 'Nn2g13760' => 'nnu', 'Nn4g26380' => 'nnu', 'Oeu000806.2' => 'oeu', 'Oeu005788.1' => 'oeu', 'Oeu006900.3' => 'oeu', 'Oeu007797.1' => 'oeu', 'Oeu011932.1' => 'oeu', 'Oeu022739.1' => 'oeu', 'Oeu037918.1' => 'oeu', 'Oeu055490.2' => 'oeu', 'Os01g0844400' => 'osa', 'Os02g0819100' => 'osa', 'Os03g0804300' => 'osa', 'Os05g0458000' => 'osa', 'Os07g0467800' => 'osa', 'Os12g0602200' => 'osa', 'Peaxi162Scf00013g03444' => 'pax', 'Peaxi162Scf00094g01120' => 'pax', 'Peaxi162Scf00191g01211' => 'pax', 'Peaxi162Scf00238g01110' => 'pax', 'Peaxi162Scf00330g00719' => 'pax', 'Peaxi162Scf00627g00018' => 'pax', 'PGR031G2686' => 'pgr', 'PGR042G0809' => 'pgr', 'PGR142G0193' => 'pgr', 'PGSC0003DMG400011066' => 'stu', 'PGSC0003DMG400012041' => 'stu', 'PGSC0003DMG400013678' => 'stu', 'PGSC0003DMG400023477' => 'stu', 'PGSC0003DMG400025956' => 'stu', 'PGSC0003DMG401019151' => 'stu', 'Phvul.006G116400' => 'pvu', 'Phvul.007G097300' => 'pvu', 'Phvul.010G015000' => 'pvu', 'Phvul.010G083900' => 'pvu', 'Potri.001G117100' => 'ptr', 'Potri.002G147300' => 'ptr', 'Potri.003G115600' => 'ptr', 'Potri.006G087400' => 'ptr', 'Potri.010G226100' => 'ptr', 'Potri.014G069200' => 'ptr', 'Potri.014G104000' => 'ptr', 'Potri.016G100200' => 'ptr', 'Pp3c10_20450' => 'ppa', 'Pp3c1_42400' => 'ppa', 'Pp3c3_24390' => 'ppa', 'Pp3c3_2860' => 'ppa', 'PRCOL_00003193' => 'pco', 'Prupe.2G144500' => 'ppe', 'Prupe.2G195700' => 'ppe', 'Prupe.2G209800' => 'ppe', 'Prupe.5G080000' => 'ppe', 'Prupe.6G257900' => 'ppe', 'Psat3g001160' => 'psa', 'Psat6g181880' => 'psa', 'Psat7g233720' => 'psa', 'PSO063G7587' => 'pso', 'PSO339G2145' => 'pso', 'PSO339G3369' => 'pso', 'PSO478G2747' => 'pso', 'PSO513G0140' => 'pso', 'PSO782G1614' => 'pso', 'PSO782G4889' => 'pso', 'PSO782G5485' => 'pso', 'PSO801G0241' => 'pso', 'QL07p048854' => 'qlo', 'QL08p046745' => 'qlo', 'QL08p052606' => 'qlo', 'QL08p053414' => 'qlo', 'QL08p054868' => 'qlo', 'RcHm_v2.0_Chr1g0350251' => 'rch', 'RcHm_v2.0_Chr1g0360851' => 'rch', 'RcHm_v2.0_Chr1g0362791' => 'rch', 'RcHm_v2.0_Chr3g0466281' => 'rch', 'RcHm_v2.0_Chr7g0201481' => 'rch', 'Rhsim01G0148600' => 'rsi', 'Rhsim05G0194400' => 'rsi', 'Rhsim07G0000700' => 'rsi', 'Rhsim07G0000800' => 'rsi', 'Rhsim07G0027900' => 'rsi', 'Rhsim09G0149500' => 'rsi', 'RhsimUnG0186900' => 'rsi', 'Sabra01G0089900' => 'sbr', 'Sabra02G0114700' => 'sbr', 'Sabra02G0116300' => 'sbr', 'Sabra03G0080100' => 'sbr', 'Sabra08G0024300' => 'sbr', 'Sabra10G0174300' => 'sbr', 'Sabra14G0048900' => 'sbr', 'Sabra14G0076500' => 'sbr', 'SalBow5G2513' => 'sbo', 'Sc01g0002300' => 'sci', 'Sc01g0004450' => 'sci', 'Sc06g0001680' => 'sci', 'Sc23g0003580' => 'sci', 'Sed0000913' => 'sed', 'Sed0001655' => 'sed', 'Sed0007745' => 'sed', 'Sed0010951' => 'sed', 'Sed0017599' => 'sed', 'Sed0021405' => 'sed', 'Sed0022810' => 'sed', 'SEGI_07099' => 'sgi', 'SEGI_11931' => 'sgi', 'SEGI_13187' => 'sgi', 'SEGI_29958' => 'sgi', 'SEGI_36351' => 'sgi', 'SGA_v2.0_scaffold126G33770' => 'sas', 'SGA_v2.0_scaffold153G37003' => 'sas', 'SGA_v2.0_scaffold2G01359' => 'sas', 'SGA_v2.0_scaffold5G03064' => 'sas', 'SGA_v2.0_scaffold95G28903' => 'sas', 'SHI12701' => 'shi', 'SHI26410' => 'shi', 'SHI38997' => 'shi', 'SHI53759' => 'shi', 'SHI53886' => 'shi', 'SHI54714' => 'shi', 'SMO011G0041' => 'smo', 'SMO146G0251' => 'smo', 'SMO160G0004' => 'smo', 'SMO174G0057' => 'smo', 'SMO244G0089' => 'smo', 'SMO296G0011' => 'smo', 'Solyc01g091280.3' => 'sly', 'Solyc05g047610.3' => 'sly', 'Solyc05g047640.3' => 'sly', 'Solyc05g055630.3' => 'sly', 'Solyc10g018160.2' => 'sly', 'Solyc10g084820.2' => 'sly', 'Solyc10g086565.2' => 'sly', 'Sopen01g037030' => 'spe', 'Sopen05g027920' => 'spe', 'Sopen05g034070' => 'spe', 'Sopen10g007260' => 'spe', 'Sopen10g034260' => 'spe', 'Sopen10g035950' => 'spe', 'Sp3g07710' => 'spa', 'Sp4g27420' => 'spa', 'Sp5g02450' => 'spa', 'Sp6g01280' => 'spa', 'Sp6g38480' => 'spa', 'Sp7g20780' => 'spa', 'TAR374G1413' => 'tar', 'TAR623G1777' => 'tar', 'TAR629G2370' => 'tar', 'TAR633G1759' => 'tar', 'TAR636G3387' => 'tar', 'THA.LOC104802447' => 'tha', 'THA.LOC104813916' => 'tha', 'THA.LOC104816423' => 'tha', 'THA.LOC104817246' => 'tha', 'THA.LOC104825895' => 'tha', 'Thecc.01G335200' => 'tca', 'Thecc.01G377400' => 'tca', 'Thecc.03G262200' => 'tca', 'Thecc.05G036800' => 'tca', 'Thecc.10G080500' => 'tca', 'Thecc.10G080800' => 'tca', 'Thhalv10001560m.g' => 'esa', 'Thhalv10006120m.g' => 'esa', 'Thhalv10014375m.g' => 'esa', 'Thhalv10021264m.g' => 'esa', 'Thhalv10028856m.g' => 'esa', 'TPR.G1914' => 'tpr', 'TPR.G4757' => 'tpr', 'TPR.G5595' => 'tpr', 'TWI14G0952' => 'twi', 'TWI14G1307' => 'twi', 'TWI38G2143' => 'twi', 'TWI59G0826' => 'twi', 'TWI77G0527' => 'twi', 'TWI81G0150' => 'twi', 'unitig_21.g21018' => 'ugi', 'unitig_26.g9725' => 'ugi', 'unitig_744.g24653' => 'ugi', 'unitig_749.g13778' => 'ugi', 'unitig_899.g15035' => 'ugi', 'vmacro04296' => 'vma', 'vmacro04852' => 'vma', 'vmacro13404' => 'vma', 'vmacro20169' => 'vma', 'vmacro21014' => 'vma', 'VMungo0331G0237' => 'vmu', 'VMungo0331G0706' => 'vmu', 'VMungo0331G1361' => 'vmu', 'VMungo0331G1489' => 'vmu', 'VMungo0540G1037' => 'vmu', 'VMungo0720G2487' => 'vmu', 'VMungo0720G2721' => 'vmu', 'Zm00001eb086860' => 'zma', 'Zm00001eb104760' => 'zma', 'Zm00001eb148220' => 'zma', 'Zm00001eb259030' => 'zma', 'Zm00001eb289590' => 'zma', 'Zm00001eb420150' => 'zma' ), 'gf_id' => 'HOM05D000968', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000968' ), 'data_identifier' => 'HOM05D000968', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000968', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p31690' => 'bna', 'A03p36040' => 'bna', 'A03p53730' => 'bna', 'A04p01410' => 'bna', 'A05p05420' => 'bna', 'A05p39630' => 'bna', 'A05p39640' => 'bna', 'A09p00970' => 'bna', 'A09p53060' => 'bna', 'A10p31890' => 'bna', 'Aa31LG10G15040' => 'aar', 'Aa31LG1G21090' => 'aar', 'Aa31LG1G26900' => 'aar', 'Aa31LG3G1820' => 'aar', 'Aa31LG5G1100' => 'aar', 'Aa31LG6G4740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2265' => 'aag', 'Actinidia07998' => 'ach', 'Actinidia11266' => 'ach', 'Actinidia12682' => 'ach', 'Actinidia26479' => 'ach', 'Actinidia31406' => 'ach', 'Actinidia32437' => 'ach', 'Actinidia38862' => 'ach', 'Ah.05g174230' => 'amhyb', 'Ah.05g179070' => 'amhyb', 'Ah.05g179090' => 'amhyb', 'Ah.12g059950' => 'amhyb', 'AL3G20480' => 'aly', 'AL4G44520' => 'aly', 'AL5G43110' => 'aly', 'AL6G13890' => 'aly', 'AL6G52620' => 'aly', 'AL7G30830' => 'aly', 'Aqoxy1G00899' => 'aox', 'Aqoxy5G04333' => 'aox', 'Aqoxy7G00641' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3IZ0NN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4EF6AW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W9P8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79GA3M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C43NQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFCU6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G95YVJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCHK29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LU1UG8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX91RN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGB4B1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8DA0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9H7JI' => 'arhy', 'AT3G09320' => 'ath', 'AT3G60800' => 'ath', 'AT4G00840' => 'ath', 'AT4G22750' => 'ath', 'AT5G04270' => 'ath', 'ATR0090G003' => 'atr', 'ATR0559G349' => 'atr', 'ATR0680G261' => 'atr', 'ATR0810G048' => 'atr', 'Atru.chr12.831' => 'acertr', 'Atru.chr5.303' => 'acertr', 'Atru.chr5.748' => 'acertr', 'Atru.chr8.1999' => 'acertr', 'Atru.chr9.1436' => 'acertr', 'AUR62004211' => 'cqu', 'AUR62004548' => 'cqu', 'AUR62013637' => 'cqu', 'AUR62022662' => 'cqu', 'AUR62025777' => 'cqu', 'AUR62042386' => 'cqu', 'BcaB01g02310' => 'bca', 'BcaB01g06062' => 'bca', 'BcaB02g08975' => 'bca', 'BcaB02g08980' => 'bca', 'BcaC01g04228' => 'bca', 'BcaC01g06830' => 'bca', 'BcaC02g10186' => 'bca', 'BcaC02g12214' => 'bca', 'BcaC04g24101' => 'bca', 'BcaC05g29520' => 'bca', 'BcaC05g29661' => 'bca', 'BcaC06g32130' => 'bca', 'BcaC06g32131' => 'bca', 'BcaC07g40601' => 'bca', 'BcaC07g42641' => 'bca', 'BcaNung01038' => 'bca', 'BcaNung01676' => 'bca', 'BcaNung02480' => 'bca', 'BcaNung07376' => 'bca', 'BolC3t16146H' => 'bol', 'BolC3t16637H' => 'bol', 'BolC4t22257H' => 'bol', 'BolC4t24728H' => 'bol', 'BolC5t34517H' => 'bol', 'BolC7t45703H' => 'bol', 'BolC8t51166H' => 'bol', 'BolC9t53038H' => 'bol', 'BolC9t60000H' => 'bol', 'BraA01t01345Z' => 'bra', 'BraA01t01346Z' => 'bra', 'BraA01t01348Z' => 'bra', 'BraA03t12347Z' => 'bra', 'BraA03t12775Z' => 'bra', 'BraA03t14439Z' => 'bra', 'BraA04t15860Z' => 'bra', 'BraA05t19511Z' => 'bra', 'BraA05t22746Z' => 'bra', 'BraA09t35767Z' => 'bra', 'BraA09t40732Z' => 'bra', 'BraA10t45233Z' => 'bra', 'C03p38720' => 'bna', 'C03p43680' => 'bna', 'C04p06350' => 'bna', 'C04p31800' => 'bna', 'C05p58680' => 'bna', 'C07p52110' => 'bna', 'C08p35760' => 'bna', 'C09p01050' => 'bna', 'C09p72600' => 'bna', 'CAN.G106.2' => 'can', 'CAN.G1482.1' => 'can', 'CAN.G324.12' => 'can', 'CAN.G388.20' => 'can', 'CAN.G412.7' => 'can', 'CAN.G694.32' => 'can', 'CAN.G92.12' => 'can', 'CANSAT11G2353' => 'cansat', 'CANSAT21G1398' => 'cansat', 'CANSAT56G2456' => 'cansat', 'CANSAT56G3031' => 'cansat', 'CANSAT56G4539' => 'cansat', 'CARHR083680' => 'chi', 'CARHR171190' => 'chi', 'CARHR209010' => 'chi', 'CARHR229680' => 'chi', 'CARHR249490' => 'chi', 'Carub.0003s0844' => 'cru', 'Carub.0005s2755' => 'cru', 'Carub.0006s0322' => 'cru', 'Carub.0006s3586' => 'cru', 'Carub.0007s1855' => 'cru', 'Ca_07808_v3' => 'car', 'Ca_09535_v3' => 'car', 'Ca_10548_v3' => 'car', 'Ca_19913_v3' => 'car', 'Ca_19916_v3' => 'car', 'Ca_19975_v3' => 'car', 'CBR_g22876' => 'cbr', 'CBR_g22879' => 'cbr', 'CBR_g38491' => 'cbr', 'CBR_g54185' => 'cbr', 'CBR_g54190' => 'cbr', 'Cc02_g11020' => 'ccan', 'Cc02_g23920' => 'ccan', 'Cc02_g39860' => 'ccan', 'Cc02_g39870' => 'ccan', 'Cc03_g06760' => 'ccan', 'Cc06_g02450' => 'ccan', 'Cc09_g09450' => 'ccan', 'CDE02G1959' => 'cde', 'CDE04G0600' => 'cde', 'CDE07G1996' => 'cde', 'CDE07G2078' => 'cde', 'CDE11G0611' => 'cde', 'Cfa001683' => 'cfa', 'Cfa001734' => 'cfa', 'Cfa001737' => 'cfa', 'Cfa003751' => 'cfa', 'Cfa012019' => 'cfa', 'Cfa017353' => 'cfa', 'Cfa017732' => 'cfa', 'Cfa022464' => 'cfa', 'Ciclev10012400m.g' => 'ccl', 'Ciclev10021242m.g' => 'ccl', 'Ciclev10021302m.g' => 'ccl', 'Ciclev10021463m.g' => 'ccl', 'Ciclev10032359m.g' => 'ccl', 'CiPaw.01G081000' => 'cil', 'CiPaw.01G262500' => 'cil', 'CiPaw.01G269800' => 'cil', 'CiPaw.02G168400' => 'cil', 'CiPaw.05G119500' => 'cil', 'CiPaw.11G147300' => 'cil', 'ClCG01G003630' => 'cla', 'ClCG05G000510' => 'cla', 'ClCG05G002300' => 'cla', 'ClCG08G007650' => 'cla', 'ClCG10G021250' => 'cla', 'COL.COLO4_06218' => 'col', 'COL.COLO4_12538' => 'col', 'COL.COLO4_14775' => 'col', 'COL.COLO4_23875' => 'col', 'Cpa.g.sc141.16' => 'cpa', 'Cpa.g.sc169.16' => 'cpa', 'Cpa.g.sc244.4' => 'cpa', 'Cpa.g.sc244.5' => 'cpa', 'Cpa.g.sc29.87' => 'cpa', 'Cpa.g.sc53.115' => 'cpa', 'Cre03.g207502' => 'cre', 'Cre06.g277000' => 'cre', 'Cre09.g394050' => 'cre', 'CsaV3_3G007680' => 'csa', 'CsaV3_3G009710' => 'csa', 'CsaV3_3G034790' => 'csa', 'CsaV3_5G003750' => 'csa', 'CsaV3_6G036620' => 'csa', 'CSS0002288' => 'camsi', 'CSS0011250' => 'camsi', 'CSS0021619' => 'camsi', 'CSS0046701' => 'camsi', 'DCAR_006420' => 'dca', 'DCAR_006865' => 'dca', 'DCAR_008558' => 'dca', 'DCAR_028754' => 'dca', 'DCAR_028755' => 'dca', 'Dinv31218' => 'din', 'Dinv32371' => 'din', 'Dinv34250' => 'din', 'Dinv37156' => 'din', 'Dinv43704' => 'din', 'Duzib093G1811' => 'dzi', 'Duzib106G1622' => 'dzi', 'Duzib114G0504' => 'dzi', 'Duzib128G0338' => 'dzi', 'Duzib128G1577' => 'dzi', 'Duzib133G0104' => 'dzi', 'Duzib133G1080' => 'dzi', 'Duzib138G0324' => 'dzi', 'Duzib138G0394' => 'dzi', 'Duzib205G0122' => 'dzi', 'Duzib268G1020' => 'dzi', 'Duzib268G1359' => 'dzi', 'ECA232G3929' => 'eca', 'ECA236G2210' => 'eca', 'ECA236G2287' => 'eca', 'ECA240G4568' => 'eca', 'ECA247G0894' => 'eca', 'EL10Ac1g00200' => 'bvu', 'EL10Ac1g00886' => 'bvu', 'EL10As1g23091' => 'bvu', 'EL10As1g23092' => 'bvu', 'Eucgr.A01284' => 'egr', 'Eucgr.A01285' => 'egr', 'Eucgr.D02456' => 'egr', 'Eucgr.E00018' => 'egr', 'Eucgr.E01439' => 'egr', 'Eucgr.G02859' => 'egr', 'FAN01G0168' => 'fan', 'FAN01G0453' => 'fan', 'FAN01G2761' => 'fan', 'FAN02G1239' => 'fan', 'FAN03G0645' => 'fan', 'FAN03G2707' => 'fan', 'FAN03G2978' => 'fan', 'FAN04G0227' => 'fan', 'FAN06G0091' => 'fan', 'FAN06G1418' => 'fan', 'FAN06G1512' => 'fan', 'FAN06G1986' => 'fan', 'FAN06G2905' => 'fan', 'FAN06G4325' => 'fan', 'FAN08G0033' => 'fan', 'FAN09G0642' => 'fan', 'FAN10G1763' => 'fan', 'FAN10G2026' => 'fan', 'FAN10G2513' => 'fan', 'FAN10G3402' => 'fan', 'FAN10G3564' => 'fan', 'FAN10G3987' => 'fan', 'FAN13G1490' => 'fan', 'FAN14G5857' => 'fan', 'FAN18G1188' => 'fan', 'FvH4_5g00750' => 'fve', 'FvH4_6g13410' => 'fve', 'FvH4_7g11740' => 'fve', 'FvH4_7g17410' => 'fve', 'FvH4_7g18860' => 'fve', 'Glyma.01G099100' => 'gma', 'Glyma.01G142300' => 'gma', 'Glyma.03G025500' => 'gma', 'Glyma.03G069700' => 'gma', 'Glyma.03G260000' => 'gma', 'Glyma.09G269800' => 'gma', 'Glyma.10G208700' => 'gma', 'Glyma.18G220400' => 'gma', 'Glyma.20G182000' => 'gma', 'Gohir.A01G221726' => 'ghi', 'Gohir.A07G134600' => 'ghi', 'Gohir.A07G146000' => 'ghi', 'Gohir.A08G173900' => 'ghi', 'Gohir.A09G194900' => 'ghi', 'Gohir.A10G204100' => 'ghi', 'Gohir.A11G080600' => 'ghi', 'Gohir.A11G327500' => 'ghi', 'Gohir.A12G101800' => 'ghi', 'Gohir.D01G211200' => 'ghi', 'Gohir.D07G139200' => 'ghi', 'Gohir.D07G152100' => 'ghi', 'Gohir.D08G192600' => 'ghi', 'Gohir.D09G189200' => 'ghi', 'Gohir.D10G212000' => 'ghi', 'Gohir.D11G085200' => 'ghi', 'Gohir.D11G346400' => 'ghi', 'Gohir.D12G104800' => 'ghi', 'Gorai.001G151300' => 'gra', 'Gorai.001G174100' => 'gra', 'Gorai.002G257000' => 'gra', 'Gorai.004G202600' => 'gra', 'Gorai.007G090900' => 'gra', 'Gorai.007G376700' => 'gra', 'Gorai.008G114100' => 'gra', 'Gorai.011G237900' => 'gra', 'GSVIVG01005450001' => 'vvi', 'GSVIVG01016232001' => 'vvi', 'GSVIVG01026157001' => 'vvi', 'GSVIVG01027419001' => 'vvi', 'GSVIVG01027631001' => 'vvi', 'GSVIVG01034143001' => 'vvi', 'HanXRQChr03g0093921' => 'han', 'HanXRQChr04g0120001' => 'han', 'HanXRQChr04g0122561' => 'han', 'HanXRQChr09g0246851' => 'han', 'HanXRQChr10g0293311' => 'han', 'HanXRQChr13g0425231' => 'han', 'HanXRQChr16g0532571' => 'han', 'Haze_09050' => 'cav', 'Haze_15715' => 'cav', 'Haze_15716' => 'cav', 'Haze_16803' => 'cav', 'Haze_16850' => 'cav', 'Hma1.2p1_0301F.1_g118655' => 'hma', 'Hma1.2p1_0309F.1_g120590' => 'hma', 'Hma1.2p1_0936F.1_g238900' => 'hma', 'Hma1.2p1_3552F.1_g336740' => 'hma', 'HPP92_003520' => 'vpl', 'HPP92_006628' => 'vpl', 'HPP92_006645' => 'vpl', 'HPP92_014669' => 'vpl', 'HPP92_015077' => 'vpl', 'Hund16742' => 'sun', 'Hund17022' => 'sun', 'Lalb_Chr02g0152131' => 'lal', 'Lalb_Chr05g0225371' => 'lal', 'Lalb_Chr07g0189841' => 'lal', 'Lalb_Chr07g0192961' => 'lal', 'Lalb_Chr12g0208221' => 'lal', 'Lalb_Chr13g0291211' => 'lal', 'Lalb_Chr13g0291781' => 'lal', 'Lalb_Chr18g0044651' => 'lal', 'Lalb_Chr21g0313731' => 'lal', 'Lj1g0022533' => 'lja', 'Lj2A18T50' => 'lonja', 'Lj2A92G93' => 'lonja', 'Lj3A965T73' => 'lonja', 'Lj3g0000673' => 'lja', 'Lj3g0002666' => 'lja', 'Lj4g0016985' => 'lja', 'Lj5g0003625' => 'lja', 'Lj7A529G36' => 'lonja', 'Lj9A569T49' => 'lonja', 'Lj9A604T63' => 'lonja', 'Lsat_1_v5_gn_3_132060' => 'lsa', 'Lsat_1_v5_gn_4_68941' => 'lsa', 'Lsat_1_v5_gn_5_95580' => 'lsa', 'Lsat_1_v5_gn_7_161' => 'lsa', 'Lsat_1_v5_gn_7_7041' => 'lsa', 'Lsat_1_v5_gn_9_33481' => 'lsa', 'Lsat_1_v5_gn_9_68260' => 'lsa', 'Manes.01G073100' => 'mes', 'Manes.01G266300' => 'mes', 'Manes.02G033300' => 'mes', 'Manes.05G017900' => 'mes', 'Manes.05G046100' => 'mes', 'Manes.08G080900' => 'mes', 'Manes.10G049400' => 'mes', 'Mapoly0009s0186' => 'mpo', 'Mapoly0036s0118' => 'mpo', 'Mapoly0101s0046' => 'mpo', 'MBI04_g30218_MAGBIO' => 'mbi', 'MBI04_g35564_MAGBIO' => 'mbi', 'MBI12_g34011_MAGBIO' => 'mbi', 'MBI14_g04655_MAGBIO' => 'mbi', 'MCO07G653' => 'mco', 'MCO10G173' => 'mco', 'MD01G1087100' => 'mdo', 'MD01G1104200' => 'mdo', 'MD02G1205100' => 'mdo', 'MD04G1079200' => 'mdo', 'MD04G1131400' => 'mdo', 'MD07G1121600' => 'mdo', 'MD07G1157300' => 'mdo', 'MD07G1171000' => 'mdo', 'MD12G1144500' => 'mdo', 'Medtr1g094610' => 'mtr', 'Medtr4g021795' => 'mtr', 'Medtr4g023760' => 'mtr', 'Medtr7g118050' => 'mtr', 'MELO3C005582.2' => 'cme', 'MELO3C005989.2' => 'cme', 'MELO3C006192.2' => 'cme', 'MELO3C009248.2' => 'cme', 'MELO3C019817.2' => 'cme', 'Migut.B01625' => 'egut', 'Migut.B01915' => 'egut', 'Migut.F01721' => 'egut', 'Migut.J00314' => 'egut', 'MSTRG.20742' => 'ama', 'MSTRG.8134' => 'ama', 'Nitab4.5_0000096g0010' => 'nta', 'Nitab4.5_0000202g0030' => 'nta', 'Nitab4.5_0000216g0370' => 'nta', 'Nitab4.5_0000457g0230' => 'nta', 'Nitab4.5_0001702g0170' => 'nta', 'Nitab4.5_0003607g0010' => 'nta', 'Nitab4.5_0004917g0020' => 'nta', 'Nitab4.5_0007059g0010' => 'nta', 'Nitab4.5_0007184g0010' => 'nta', 'Nitab4.5_0007346g0020' => 'nta', 'Nn1g00410' => 'nnu', 'Nn1g01252' => 'nnu', 'Nn2g11168' => 'nnu', 'Nn2g13403' => 'nnu', 'Nn2g13760' => 'nnu', 'Nn4g26380' => 'nnu', 'Oeu000806.2' => 'oeu', 'Oeu005788.1' => 'oeu', 'Oeu006900.3' => 'oeu', 'Oeu007797.1' => 'oeu', 'Oeu011932.1' => 'oeu', 'Oeu022739.1' => 'oeu', 'Oeu037918.1' => 'oeu', 'Oeu055490.2' => 'oeu', 'Os01g0844400' => 'osa', 'Os02g0819100' => 'osa', 'Os03g0804300' => 'osa', 'Os05g0458000' => 'osa', 'Os07g0467800' => 'osa', 'Os12g0602200' => 'osa', 'Peaxi162Scf00013g03444' => 'pax', 'Peaxi162Scf00094g01120' => 'pax', 'Peaxi162Scf00191g01211' => 'pax', 'Peaxi162Scf00238g01110' => 'pax', 'Peaxi162Scf00330g00719' => 'pax', 'Peaxi162Scf00627g00018' => 'pax', 'PGR031G2686' => 'pgr', 'PGR042G0809' => 'pgr', 'PGR142G0193' => 'pgr', 'PGSC0003DMG400011066' => 'stu', 'PGSC0003DMG400012041' => 'stu', 'PGSC0003DMG400013678' => 'stu', 'PGSC0003DMG400023477' => 'stu', 'PGSC0003DMG400025956' => 'stu', 'PGSC0003DMG401019151' => 'stu', 'Phvul.006G116400' => 'pvu', 'Phvul.007G097300' => 'pvu', 'Phvul.010G015000' => 'pvu', 'Phvul.010G083900' => 'pvu', 'Potri.001G117100' => 'ptr', 'Potri.002G147300' => 'ptr', 'Potri.003G115600' => 'ptr', 'Potri.006G087400' => 'ptr', 'Potri.010G226100' => 'ptr', 'Potri.014G069200' => 'ptr', 'Potri.014G104000' => 'ptr', 'Potri.016G100200' => 'ptr', 'Pp3c10_20450' => 'ppa', 'Pp3c1_42400' => 'ppa', 'Pp3c3_24390' => 'ppa', 'Pp3c3_2860' => 'ppa', 'PRCOL_00003193' => 'pco', 'Prupe.2G144500' => 'ppe', 'Prupe.2G195700' => 'ppe', 'Prupe.2G209800' => 'ppe', 'Prupe.5G080000' => 'ppe', 'Prupe.6G257900' => 'ppe', 'Psat3g001160' => 'psa', 'Psat6g181880' => 'psa', 'Psat7g233720' => 'psa', 'PSO063G7587' => 'pso', 'PSO339G2145' => 'pso', 'PSO339G3369' => 'pso', 'PSO478G2747' => 'pso', 'PSO513G0140' => 'pso', 'PSO782G1614' => 'pso', 'PSO782G4889' => 'pso', 'PSO782G5485' => 'pso', 'PSO801G0241' => 'pso', 'QL07p048854' => 'qlo', 'QL08p046745' => 'qlo', 'QL08p052606' => 'qlo', 'QL08p053414' => 'qlo', 'QL08p054868' => 'qlo', 'RcHm_v2.0_Chr1g0350251' => 'rch', 'RcHm_v2.0_Chr1g0360851' => 'rch', 'RcHm_v2.0_Chr1g0362791' => 'rch', 'RcHm_v2.0_Chr3g0466281' => 'rch', 'RcHm_v2.0_Chr7g0201481' => 'rch', 'Rhsim01G0148600' => 'rsi', 'Rhsim05G0194400' => 'rsi', 'Rhsim07G0000700' => 'rsi', 'Rhsim07G0000800' => 'rsi', 'Rhsim07G0027900' => 'rsi', 'Rhsim09G0149500' => 'rsi', 'RhsimUnG0186900' => 'rsi', 'Sabra01G0089900' => 'sbr', 'Sabra02G0114700' => 'sbr', 'Sabra02G0116300' => 'sbr', 'Sabra03G0080100' => 'sbr', 'Sabra08G0024300' => 'sbr', 'Sabra10G0174300' => 'sbr', 'Sabra14G0048900' => 'sbr', 'Sabra14G0076500' => 'sbr', 'SalBow5G2513' => 'sbo', 'Sc01g0002300' => 'sci', 'Sc01g0004450' => 'sci', 'Sc06g0001680' => 'sci', 'Sc23g0003580' => 'sci', 'Sed0000913' => 'sed', 'Sed0001655' => 'sed', 'Sed0007745' => 'sed', 'Sed0010951' => 'sed', 'Sed0017599' => 'sed', 'Sed0021405' => 'sed', 'Sed0022810' => 'sed', 'SEGI_07099' => 'sgi', 'SEGI_11931' => 'sgi', 'SEGI_13187' => 'sgi', 'SEGI_29958' => 'sgi', 'SEGI_36351' => 'sgi', 'SGA_v2.0_scaffold126G33770' => 'sas', 'SGA_v2.0_scaffold153G37003' => 'sas', 'SGA_v2.0_scaffold2G01359' => 'sas', 'SGA_v2.0_scaffold5G03064' => 'sas', 'SGA_v2.0_scaffold95G28903' => 'sas', 'SHI12701' => 'shi', 'SHI26410' => 'shi', 'SHI38997' => 'shi', 'SHI53759' => 'shi', 'SHI53886' => 'shi', 'SHI54714' => 'shi', 'SMO011G0041' => 'smo', 'SMO146G0251' => 'smo', 'SMO160G0004' => 'smo', 'SMO174G0057' => 'smo', 'SMO244G0089' => 'smo', 'SMO296G0011' => 'smo', 'Solyc01g091280.3' => 'sly', 'Solyc05g047610.3' => 'sly', 'Solyc05g047640.3' => 'sly', 'Solyc05g055630.3' => 'sly', 'Solyc10g018160.2' => 'sly', 'Solyc10g084820.2' => 'sly', 'Solyc10g086565.2' => 'sly', 'Sopen01g037030' => 'spe', 'Sopen05g027920' => 'spe', 'Sopen05g034070' => 'spe', 'Sopen10g007260' => 'spe', 'Sopen10g034260' => 'spe', 'Sopen10g035950' => 'spe', 'Sp3g07710' => 'spa', 'Sp4g27420' => 'spa', 'Sp5g02450' => 'spa', 'Sp6g01280' => 'spa', 'Sp6g38480' => 'spa', 'Sp7g20780' => 'spa', 'TAR374G1413' => 'tar', 'TAR623G1777' => 'tar', 'TAR629G2370' => 'tar', 'TAR633G1759' => 'tar', 'TAR636G3387' => 'tar', 'THA.LOC104802447' => 'tha', 'THA.LOC104813916' => 'tha', 'THA.LOC104816423' => 'tha', 'THA.LOC104817246' => 'tha', 'THA.LOC104825895' => 'tha', 'Thecc.01G335200' => 'tca', 'Thecc.01G377400' => 'tca', 'Thecc.03G262200' => 'tca', 'Thecc.05G036800' => 'tca', 'Thecc.10G080500' => 'tca', 'Thecc.10G080800' => 'tca', 'Thhalv10001560m.g' => 'esa', 'Thhalv10006120m.g' => 'esa', 'Thhalv10014375m.g' => 'esa', 'Thhalv10021264m.g' => 'esa', 'Thhalv10028856m.g' => 'esa', 'TPR.G1914' => 'tpr', 'TPR.G4757' => 'tpr', 'TPR.G5595' => 'tpr', 'TWI14G0952' => 'twi', 'TWI14G1307' => 'twi', 'TWI38G2143' => 'twi', 'TWI59G0826' => 'twi', 'TWI77G0527' => 'twi', 'TWI81G0150' => 'twi', 'unitig_21.g21018' => 'ugi', 'unitig_26.g9725' => 'ugi', 'unitig_744.g24653' => 'ugi', 'unitig_749.g13778' => 'ugi', 'unitig_899.g15035' => 'ugi', 'vmacro04296' => 'vma', 'vmacro04852' => 'vma', 'vmacro13404' => 'vma', 'vmacro20169' => 'vma', 'vmacro21014' => 'vma', 'VMungo0331G0237' => 'vmu', 'VMungo0331G0706' => 'vmu', 'VMungo0331G1361' => 'vmu', 'VMungo0331G1489' => 'vmu', 'VMungo0540G1037' => 'vmu', 'VMungo0720G2487' => 'vmu', 'VMungo0720G2721' => 'vmu', 'Zm00001eb086860' => 'zma', 'Zm00001eb104760' => 'zma', 'Zm00001eb148220' => 'zma', 'Zm00001eb259030' => 'zma', 'Zm00001eb289590' => 'zma', 'Zm00001eb420150' => 'zma' ) $gf_id = 'HOM05D000968' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000968' ) $data_identifier = 'HOM05D000968' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 19, 'bol' => (int) 9, 'bra' => (int) 12, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 5, 'ccan' => (int) 7, 'cde' => (int) 5, 'cfa' => (int) 8, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 4, 'dca' => (int) 5, 'din' => (int) 5, 'dzi' => (int) 12, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 25, 'fve' => (int) 5, 'gma' => (int) 9, 'ghi' => (int) 18, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 7, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 5, 'sun' => (int) 2, 'lal' => (int) 9, 'lja' => (int) 5, 'lonja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 9, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 2, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 3, 'stu' => (int) 6, 'pvu' => (int) 4, 'ptr' => (int) 8, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 3, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 1, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 5, 'sas' => (int) 5, 'shi' => (int) 6, 'smo' => (int) 6, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 3, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420150' $species_info = array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ) $local_species = 'dzi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000968', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p31690' => 'bna', 'A03p36040' => 'bna', 'A03p53730' => 'bna', 'A04p01410' => 'bna', 'A05p05420' => 'bna', 'A05p39630' => 'bna', 'A05p39640' => 'bna', 'A09p00970' => 'bna', 'A09p53060' => 'bna', 'A10p31890' => 'bna', 'Aa31LG10G15040' => 'aar', 'Aa31LG1G21090' => 'aar', 'Aa31LG1G26900' => 'aar', 'Aa31LG3G1820' => 'aar', 'Aa31LG5G1100' => 'aar', 'Aa31LG6G4740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2265' => 'aag', 'Actinidia07998' => 'ach', 'Actinidia11266' => 'ach', 'Actinidia12682' => 'ach', 'Actinidia26479' => 'ach', 'Actinidia31406' => 'ach', 'Actinidia32437' => 'ach', 'Actinidia38862' => 'ach', 'Ah.05g174230' => 'amhyb', 'Ah.05g179070' => 'amhyb', 'Ah.05g179090' => 'amhyb', 'Ah.12g059950' => 'amhyb', 'AL3G20480' => 'aly', 'AL4G44520' => 'aly', 'AL5G43110' => 'aly', 'AL6G13890' => 'aly', 'AL6G52620' => 'aly', 'AL7G30830' => 'aly', 'Aqoxy1G00899' => 'aox', 'Aqoxy5G04333' => 'aox', 'Aqoxy7G00641' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3IZ0NN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4EF6AW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W9P8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79GA3M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C43NQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFCU6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G95YVJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCHK29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LU1UG8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX91RN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGB4B1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8DA0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9H7JI' => 'arhy', 'AT3G09320' => 'ath', 'AT3G60800' => 'ath', 'AT4G00840' => 'ath', 'AT4G22750' => 'ath', 'AT5G04270' => 'ath', 'ATR0090G003' => 'atr', 'ATR0559G349' => 'atr', 'ATR0680G261' => 'atr', 'ATR0810G048' => 'atr', 'Atru.chr12.831' => 'acertr', 'Atru.chr5.303' => 'acertr', 'Atru.chr5.748' => 'acertr', 'Atru.chr8.1999' => 'acertr', 'Atru.chr9.1436' => 'acertr', 'AUR62004211' => 'cqu', 'AUR62004548' => 'cqu', 'AUR62013637' => 'cqu', 'AUR62022662' => 'cqu', 'AUR62025777' => 'cqu', 'AUR62042386' => 'cqu', 'BcaB01g02310' => 'bca', 'BcaB01g06062' => 'bca', 'BcaB02g08975' => 'bca', 'BcaB02g08980' => 'bca', 'BcaC01g04228' => 'bca', 'BcaC01g06830' => 'bca', 'BcaC02g10186' => 'bca', 'BcaC02g12214' => 'bca', 'BcaC04g24101' => 'bca', 'BcaC05g29520' => 'bca', 'BcaC05g29661' => 'bca', 'BcaC06g32130' => 'bca', 'BcaC06g32131' => 'bca', 'BcaC07g40601' => 'bca', 'BcaC07g42641' => 'bca', 'BcaNung01038' => 'bca', 'BcaNung01676' => 'bca', 'BcaNung02480' => 'bca', 'BcaNung07376' => 'bca', 'BolC3t16146H' => 'bol', 'BolC3t16637H' => 'bol', 'BolC4t22257H' => 'bol', 'BolC4t24728H' => 'bol', 'BolC5t34517H' => 'bol', 'BolC7t45703H' => 'bol', 'BolC8t51166H' => 'bol', 'BolC9t53038H' => 'bol', 'BolC9t60000H' => 'bol', 'BraA01t01345Z' => 'bra', 'BraA01t01346Z' => 'bra', 'BraA01t01348Z' => 'bra', 'BraA03t12347Z' => 'bra', 'BraA03t12775Z' => 'bra', 'BraA03t14439Z' => 'bra', 'BraA04t15860Z' => 'bra', 'BraA05t19511Z' => 'bra', 'BraA05t22746Z' => 'bra', 'BraA09t35767Z' => 'bra', 'BraA09t40732Z' => 'bra', 'BraA10t45233Z' => 'bra', 'C03p38720' => 'bna', 'C03p43680' => 'bna', 'C04p06350' => 'bna', 'C04p31800' => 'bna', 'C05p58680' => 'bna', 'C07p52110' => 'bna', 'C08p35760' => 'bna', 'C09p01050' => 'bna', 'C09p72600' => 'bna', 'CAN.G106.2' => 'can', 'CAN.G1482.1' => 'can', 'CAN.G324.12' => 'can', 'CAN.G388.20' => 'can', 'CAN.G412.7' => 'can', 'CAN.G694.32' => 'can', 'CAN.G92.12' => 'can', 'CANSAT11G2353' => 'cansat', 'CANSAT21G1398' => 'cansat', 'CANSAT56G2456' => 'cansat', 'CANSAT56G3031' => 'cansat', 'CANSAT56G4539' => 'cansat', 'CARHR083680' => 'chi', 'CARHR171190' => 'chi', 'CARHR209010' => 'chi', 'CARHR229680' => 'chi', 'CARHR249490' => 'chi', 'Carub.0003s0844' => 'cru', 'Carub.0005s2755' => 'cru', 'Carub.0006s0322' => 'cru', 'Carub.0006s3586' => 'cru', 'Carub.0007s1855' => 'cru', 'Ca_07808_v3' => 'car', 'Ca_09535_v3' => 'car', 'Ca_10548_v3' => 'car', 'Ca_19913_v3' => 'car', 'Ca_19916_v3' => 'car', 'Ca_19975_v3' => 'car', 'CBR_g22876' => 'cbr', 'CBR_g22879' => 'cbr', 'CBR_g38491' => 'cbr', 'CBR_g54185' => 'cbr', 'CBR_g54190' => 'cbr', 'Cc02_g11020' => 'ccan', 'Cc02_g23920' => 'ccan', 'Cc02_g39860' => 'ccan', 'Cc02_g39870' => 'ccan', 'Cc03_g06760' => 'ccan', 'Cc06_g02450' => 'ccan', 'Cc09_g09450' => 'ccan', 'CDE02G1959' => 'cde', 'CDE04G0600' => 'cde', 'CDE07G1996' => 'cde', 'CDE07G2078' => 'cde', 'CDE11G0611' => 'cde', 'Cfa001683' => 'cfa', 'Cfa001734' => 'cfa', 'Cfa001737' => 'cfa', 'Cfa003751' => 'cfa', 'Cfa012019' => 'cfa', 'Cfa017353' => 'cfa', 'Cfa017732' => 'cfa', 'Cfa022464' => 'cfa', 'Ciclev10012400m.g' => 'ccl', 'Ciclev10021242m.g' => 'ccl', 'Ciclev10021302m.g' => 'ccl', 'Ciclev10021463m.g' => 'ccl', 'Ciclev10032359m.g' => 'ccl', 'CiPaw.01G081000' => 'cil', 'CiPaw.01G262500' => 'cil', 'CiPaw.01G269800' => 'cil', 'CiPaw.02G168400' => 'cil', 'CiPaw.05G119500' => 'cil', 'CiPaw.11G147300' => 'cil', 'ClCG01G003630' => 'cla', 'ClCG05G000510' => 'cla', 'ClCG05G002300' => 'cla', 'ClCG08G007650' => 'cla', 'ClCG10G021250' => 'cla', 'COL.COLO4_06218' => 'col', 'COL.COLO4_12538' => 'col', 'COL.COLO4_14775' => 'col', 'COL.COLO4_23875' => 'col', 'Cpa.g.sc141.16' => 'cpa', 'Cpa.g.sc169.16' => 'cpa', 'Cpa.g.sc244.4' => 'cpa', 'Cpa.g.sc244.5' => 'cpa', 'Cpa.g.sc29.87' => 'cpa', 'Cpa.g.sc53.115' => 'cpa', 'Cre03.g207502' => 'cre', 'Cre06.g277000' => 'cre', 'Cre09.g394050' => 'cre', 'CsaV3_3G007680' => 'csa', 'CsaV3_3G009710' => 'csa', 'CsaV3_3G034790' => 'csa', 'CsaV3_5G003750' => 'csa', 'CsaV3_6G036620' => 'csa', 'CSS0002288' => 'camsi', 'CSS0011250' => 'camsi', 'CSS0021619' => 'camsi', 'CSS0046701' => 'camsi', 'DCAR_006420' => 'dca', 'DCAR_006865' => 'dca', 'DCAR_008558' => 'dca', 'DCAR_028754' => 'dca', 'DCAR_028755' => 'dca', 'Dinv31218' => 'din', 'Dinv32371' => 'din', 'Dinv34250' => 'din', 'Dinv37156' => 'din', 'Dinv43704' => 'din', 'Duzib093G1811' => 'dzi', 'Duzib106G1622' => 'dzi', 'Duzib114G0504' => 'dzi', 'Duzib128G0338' => 'dzi', 'Duzib128G1577' => 'dzi', 'Duzib133G0104' => 'dzi', 'Duzib133G1080' => 'dzi', 'Duzib138G0324' => 'dzi', 'Duzib138G0394' => 'dzi', 'Duzib205G0122' => 'dzi', 'Duzib268G1020' => 'dzi', 'Duzib268G1359' => 'dzi', 'ECA232G3929' => 'eca', 'ECA236G2210' => 'eca', 'ECA236G2287' => 'eca', 'ECA240G4568' => 'eca', 'ECA247G0894' => 'eca', 'EL10Ac1g00200' => 'bvu', 'EL10Ac1g00886' => 'bvu', 'EL10As1g23091' => 'bvu', 'EL10As1g23092' => 'bvu', 'Eucgr.A01284' => 'egr', 'Eucgr.A01285' => 'egr', 'Eucgr.D02456' => 'egr', 'Eucgr.E00018' => 'egr', 'Eucgr.E01439' => 'egr', 'Eucgr.G02859' => 'egr', 'FAN01G0168' => 'fan', 'FAN01G0453' => 'fan', 'FAN01G2761' => 'fan', 'FAN02G1239' => 'fan', 'FAN03G0645' => 'fan', 'FAN03G2707' => 'fan', 'FAN03G2978' => 'fan', 'FAN04G0227' => 'fan', 'FAN06G0091' => 'fan', 'FAN06G1418' => 'fan', 'FAN06G1512' => 'fan', 'FAN06G1986' => 'fan', 'FAN06G2905' => 'fan', 'FAN06G4325' => 'fan', 'FAN08G0033' => 'fan', 'FAN09G0642' => 'fan', 'FAN10G1763' => 'fan', 'FAN10G2026' => 'fan', 'FAN10G2513' => 'fan', 'FAN10G3402' => 'fan', 'FAN10G3564' => 'fan', 'FAN10G3987' => 'fan', 'FAN13G1490' => 'fan', 'FAN14G5857' => 'fan', 'FAN18G1188' => 'fan', 'FvH4_5g00750' => 'fve', 'FvH4_6g13410' => 'fve', 'FvH4_7g11740' => 'fve', 'FvH4_7g17410' => 'fve', 'FvH4_7g18860' => 'fve', 'Glyma.01G099100' => 'gma', 'Glyma.01G142300' => 'gma', 'Glyma.03G025500' => 'gma', 'Glyma.03G069700' => 'gma', 'Glyma.03G260000' => 'gma', 'Glyma.09G269800' => 'gma', 'Glyma.10G208700' => 'gma', 'Glyma.18G220400' => 'gma', 'Glyma.20G182000' => 'gma', 'Gohir.A01G221726' => 'ghi', 'Gohir.A07G134600' => 'ghi', 'Gohir.A07G146000' => 'ghi', 'Gohir.A08G173900' => 'ghi', 'Gohir.A09G194900' => 'ghi', 'Gohir.A10G204100' => 'ghi', 'Gohir.A11G080600' => 'ghi', 'Gohir.A11G327500' => 'ghi', 'Gohir.A12G101800' => 'ghi', 'Gohir.D01G211200' => 'ghi', 'Gohir.D07G139200' => 'ghi', 'Gohir.D07G152100' => 'ghi', 'Gohir.D08G192600' => 'ghi', 'Gohir.D09G189200' => 'ghi', 'Gohir.D10G212000' => 'ghi', 'Gohir.D11G085200' => 'ghi', 'Gohir.D11G346400' => 'ghi', 'Gohir.D12G104800' => 'ghi', 'Gorai.001G151300' => 'gra', 'Gorai.001G174100' => 'gra', 'Gorai.002G257000' => 'gra', 'Gorai.004G202600' => 'gra', 'Gorai.007G090900' => 'gra', 'Gorai.007G376700' => 'gra', 'Gorai.008G114100' => 'gra', 'Gorai.011G237900' => 'gra', 'GSVIVG01005450001' => 'vvi', 'GSVIVG01016232001' => 'vvi', 'GSVIVG01026157001' => 'vvi', 'GSVIVG01027419001' => 'vvi', 'GSVIVG01027631001' => 'vvi', 'GSVIVG01034143001' => 'vvi', 'HanXRQChr03g0093921' => 'han', 'HanXRQChr04g0120001' => 'han', 'HanXRQChr04g0122561' => 'han', 'HanXRQChr09g0246851' => 'han', 'HanXRQChr10g0293311' => 'han', 'HanXRQChr13g0425231' => 'han', 'HanXRQChr16g0532571' => 'han', 'Haze_09050' => 'cav', 'Haze_15715' => 'cav', 'Haze_15716' => 'cav', 'Haze_16803' => 'cav', 'Haze_16850' => 'cav', 'Hma1.2p1_0301F.1_g118655' => 'hma', 'Hma1.2p1_0309F.1_g120590' => 'hma', 'Hma1.2p1_0936F.1_g238900' => 'hma', 'Hma1.2p1_3552F.1_g336740' => 'hma', 'HPP92_003520' => 'vpl', 'HPP92_006628' => 'vpl', 'HPP92_006645' => 'vpl', 'HPP92_014669' => 'vpl', 'HPP92_015077' => 'vpl', 'Hund16742' => 'sun', 'Hund17022' => 'sun', 'Lalb_Chr02g0152131' => 'lal', 'Lalb_Chr05g0225371' => 'lal', 'Lalb_Chr07g0189841' => 'lal', 'Lalb_Chr07g0192961' => 'lal', 'Lalb_Chr12g0208221' => 'lal', 'Lalb_Chr13g0291211' => 'lal', 'Lalb_Chr13g0291781' => 'lal', 'Lalb_Chr18g0044651' => 'lal', 'Lalb_Chr21g0313731' => 'lal', 'Lj1g0022533' => 'lja', 'Lj2A18T50' => 'lonja', 'Lj2A92G93' => 'lonja', 'Lj3A965T73' => 'lonja', 'Lj3g0000673' => 'lja', 'Lj3g0002666' => 'lja', 'Lj4g0016985' => 'lja', 'Lj5g0003625' => 'lja', 'Lj7A529G36' => 'lonja', 'Lj9A569T49' => 'lonja', 'Lj9A604T63' => 'lonja', 'Lsat_1_v5_gn_3_132060' => 'lsa', 'Lsat_1_v5_gn_4_68941' => 'lsa', 'Lsat_1_v5_gn_5_95580' => 'lsa', 'Lsat_1_v5_gn_7_161' => 'lsa', 'Lsat_1_v5_gn_7_7041' => 'lsa', 'Lsat_1_v5_gn_9_33481' => 'lsa', 'Lsat_1_v5_gn_9_68260' => 'lsa', 'Manes.01G073100' => 'mes', 'Manes.01G266300' => 'mes', 'Manes.02G033300' => 'mes', 'Manes.05G017900' => 'mes', 'Manes.05G046100' => 'mes', 'Manes.08G080900' => 'mes', 'Manes.10G049400' => 'mes', 'Mapoly0009s0186' => 'mpo', 'Mapoly0036s0118' => 'mpo', 'Mapoly0101s0046' => 'mpo', 'MBI04_g30218_MAGBIO' => 'mbi', 'MBI04_g35564_MAGBIO' => 'mbi', 'MBI12_g34011_MAGBIO' => 'mbi', 'MBI14_g04655_MAGBIO' => 'mbi', 'MCO07G653' => 'mco', 'MCO10G173' => 'mco', 'MD01G1087100' => 'mdo', 'MD01G1104200' => 'mdo', 'MD02G1205100' => 'mdo', 'MD04G1079200' => 'mdo', 'MD04G1131400' => 'mdo', 'MD07G1121600' => 'mdo', 'MD07G1157300' => 'mdo', 'MD07G1171000' => 'mdo', 'MD12G1144500' => 'mdo', 'Medtr1g094610' => 'mtr', 'Medtr4g021795' => 'mtr', 'Medtr4g023760' => 'mtr', 'Medtr7g118050' => 'mtr', 'MELO3C005582.2' => 'cme', 'MELO3C005989.2' => 'cme', 'MELO3C006192.2' => 'cme', 'MELO3C009248.2' => 'cme', 'MELO3C019817.2' => 'cme', 'Migut.B01625' => 'egut', 'Migut.B01915' => 'egut', 'Migut.F01721' => 'egut', 'Migut.J00314' => 'egut', 'MSTRG.20742' => 'ama', 'MSTRG.8134' => 'ama', 'Nitab4.5_0000096g0010' => 'nta', 'Nitab4.5_0000202g0030' => 'nta', 'Nitab4.5_0000216g0370' => 'nta', 'Nitab4.5_0000457g0230' => 'nta', 'Nitab4.5_0001702g0170' => 'nta', 'Nitab4.5_0003607g0010' => 'nta', 'Nitab4.5_0004917g0020' => 'nta', 'Nitab4.5_0007059g0010' => 'nta', 'Nitab4.5_0007184g0010' => 'nta', 'Nitab4.5_0007346g0020' => 'nta', 'Nn1g00410' => 'nnu', 'Nn1g01252' => 'nnu', 'Nn2g11168' => 'nnu', 'Nn2g13403' => 'nnu', 'Nn2g13760' => 'nnu', 'Nn4g26380' => 'nnu', 'Oeu000806.2' => 'oeu', 'Oeu005788.1' => 'oeu', 'Oeu006900.3' => 'oeu', 'Oeu007797.1' => 'oeu', 'Oeu011932.1' => 'oeu', 'Oeu022739.1' => 'oeu', 'Oeu037918.1' => 'oeu', 'Oeu055490.2' => 'oeu', 'Os01g0844400' => 'osa', 'Os02g0819100' => 'osa', 'Os03g0804300' => 'osa', 'Os05g0458000' => 'osa', 'Os07g0467800' => 'osa', 'Os12g0602200' => 'osa', 'Peaxi162Scf00013g03444' => 'pax', 'Peaxi162Scf00094g01120' => 'pax', 'Peaxi162Scf00191g01211' => 'pax', 'Peaxi162Scf00238g01110' => 'pax', 'Peaxi162Scf00330g00719' => 'pax', 'Peaxi162Scf00627g00018' => 'pax', 'PGR031G2686' => 'pgr', 'PGR042G0809' => 'pgr', 'PGR142G0193' => 'pgr', 'PGSC0003DMG400011066' => 'stu', 'PGSC0003DMG400012041' => 'stu', 'PGSC0003DMG400013678' => 'stu', 'PGSC0003DMG400023477' => 'stu', 'PGSC0003DMG400025956' => 'stu', 'PGSC0003DMG401019151' => 'stu', 'Phvul.006G116400' => 'pvu', 'Phvul.007G097300' => 'pvu', 'Phvul.010G015000' => 'pvu', 'Phvul.010G083900' => 'pvu', 'Potri.001G117100' => 'ptr', 'Potri.002G147300' => 'ptr', 'Potri.003G115600' => 'ptr', 'Potri.006G087400' => 'ptr', 'Potri.010G226100' => 'ptr', 'Potri.014G069200' => 'ptr', 'Potri.014G104000' => 'ptr', 'Potri.016G100200' => 'ptr', 'Pp3c10_20450' => 'ppa', 'Pp3c1_42400' => 'ppa', 'Pp3c3_24390' => 'ppa', 'Pp3c3_2860' => 'ppa', 'PRCOL_00003193' => 'pco', 'Prupe.2G144500' => 'ppe', 'Prupe.2G195700' => 'ppe', 'Prupe.2G209800' => 'ppe', 'Prupe.5G080000' => 'ppe', 'Prupe.6G257900' => 'ppe', 'Psat3g001160' => 'psa', 'Psat6g181880' => 'psa', 'Psat7g233720' => 'psa', 'PSO063G7587' => 'pso', 'PSO339G2145' => 'pso', 'PSO339G3369' => 'pso', 'PSO478G2747' => 'pso', 'PSO513G0140' => 'pso', 'PSO782G1614' => 'pso', 'PSO782G4889' => 'pso', 'PSO782G5485' => 'pso', 'PSO801G0241' => 'pso', 'QL07p048854' => 'qlo', 'QL08p046745' => 'qlo', 'QL08p052606' => 'qlo', 'QL08p053414' => 'qlo', 'QL08p054868' => 'qlo', 'RcHm_v2.0_Chr1g0350251' => 'rch', 'RcHm_v2.0_Chr1g0360851' => 'rch', 'RcHm_v2.0_Chr1g0362791' => 'rch', 'RcHm_v2.0_Chr3g0466281' => 'rch', 'RcHm_v2.0_Chr7g0201481' => 'rch', 'Rhsim01G0148600' => 'rsi', 'Rhsim05G0194400' => 'rsi', 'Rhsim07G0000700' => 'rsi', 'Rhsim07G0000800' => 'rsi', 'Rhsim07G0027900' => 'rsi', 'Rhsim09G0149500' => 'rsi', 'RhsimUnG0186900' => 'rsi', 'Sabra01G0089900' => 'sbr', 'Sabra02G0114700' => 'sbr', 'Sabra02G0116300' => 'sbr', 'Sabra03G0080100' => 'sbr', 'Sabra08G0024300' => 'sbr', 'Sabra10G0174300' => 'sbr', 'Sabra14G0048900' => 'sbr', 'Sabra14G0076500' => 'sbr', 'SalBow5G2513' => 'sbo', 'Sc01g0002300' => 'sci', 'Sc01g0004450' => 'sci', 'Sc06g0001680' => 'sci', 'Sc23g0003580' => 'sci', 'Sed0000913' => 'sed', 'Sed0001655' => 'sed', 'Sed0007745' => 'sed', 'Sed0010951' => 'sed', 'Sed0017599' => 'sed', 'Sed0021405' => 'sed', 'Sed0022810' => 'sed', 'SEGI_07099' => 'sgi', 'SEGI_11931' => 'sgi', 'SEGI_13187' => 'sgi', 'SEGI_29958' => 'sgi', 'SEGI_36351' => 'sgi', 'SGA_v2.0_scaffold126G33770' => 'sas', 'SGA_v2.0_scaffold153G37003' => 'sas', 'SGA_v2.0_scaffold2G01359' => 'sas', 'SGA_v2.0_scaffold5G03064' => 'sas', 'SGA_v2.0_scaffold95G28903' => 'sas', 'SHI12701' => 'shi', 'SHI26410' => 'shi', 'SHI38997' => 'shi', 'SHI53759' => 'shi', 'SHI53886' => 'shi', 'SHI54714' => 'shi', 'SMO011G0041' => 'smo', 'SMO146G0251' => 'smo', 'SMO160G0004' => 'smo', 'SMO174G0057' => 'smo', 'SMO244G0089' => 'smo', 'SMO296G0011' => 'smo', 'Solyc01g091280.3' => 'sly', 'Solyc05g047610.3' => 'sly', 'Solyc05g047640.3' => 'sly', 'Solyc05g055630.3' => 'sly', 'Solyc10g018160.2' => 'sly', 'Solyc10g084820.2' => 'sly', 'Solyc10g086565.2' => 'sly', 'Sopen01g037030' => 'spe', 'Sopen05g027920' => 'spe', 'Sopen05g034070' => 'spe', 'Sopen10g007260' => 'spe', 'Sopen10g034260' => 'spe', 'Sopen10g035950' => 'spe', 'Sp3g07710' => 'spa', 'Sp4g27420' => 'spa', 'Sp5g02450' => 'spa', 'Sp6g01280' => 'spa', 'Sp6g38480' => 'spa', 'Sp7g20780' => 'spa', 'TAR374G1413' => 'tar', 'TAR623G1777' => 'tar', 'TAR629G2370' => 'tar', 'TAR633G1759' => 'tar', 'TAR636G3387' => 'tar', 'THA.LOC104802447' => 'tha', 'THA.LOC104813916' => 'tha', 'THA.LOC104816423' => 'tha', 'THA.LOC104817246' => 'tha', 'THA.LOC104825895' => 'tha', 'Thecc.01G335200' => 'tca', 'Thecc.01G377400' => 'tca', 'Thecc.03G262200' => 'tca', 'Thecc.05G036800' => 'tca', 'Thecc.10G080500' => 'tca', 'Thecc.10G080800' => 'tca', 'Thhalv10001560m.g' => 'esa', 'Thhalv10006120m.g' => 'esa', 'Thhalv10014375m.g' => 'esa', 'Thhalv10021264m.g' => 'esa', 'Thhalv10028856m.g' => 'esa', 'TPR.G1914' => 'tpr', 'TPR.G4757' => 'tpr', 'TPR.G5595' => 'tpr', 'TWI14G0952' => 'twi', 'TWI14G1307' => 'twi', 'TWI38G2143' => 'twi', 'TWI59G0826' => 'twi', 'TWI77G0527' => 'twi', 'TWI81G0150' => 'twi', 'unitig_21.g21018' => 'ugi', 'unitig_26.g9725' => 'ugi', 'unitig_744.g24653' => 'ugi', 'unitig_749.g13778' => 'ugi', 'unitig_899.g15035' => 'ugi', 'vmacro04296' => 'vma', 'vmacro04852' => 'vma', 'vmacro13404' => 'vma', 'vmacro20169' => 'vma', 'vmacro21014' => 'vma', 'VMungo0331G0237' => 'vmu', 'VMungo0331G0706' => 'vmu', 'VMungo0331G1361' => 'vmu', 'VMungo0331G1489' => 'vmu', 'VMungo0540G1037' => 'vmu', 'VMungo0720G2487' => 'vmu', 'VMungo0720G2721' => 'vmu', 'Zm00001eb086860' => 'zma', 'Zm00001eb104760' => 'zma', 'Zm00001eb148220' => 'zma', 'Zm00001eb259030' => 'zma', 'Zm00001eb289590' => 'zma', 'Zm00001eb420150' => 'zma' ), 'gf_id' => 'HOM05D000968', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000968' ), 'data_identifier' => 'HOM05D000968', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000968', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p31690' => 'bna', 'A03p36040' => 'bna', 'A03p53730' => 'bna', 'A04p01410' => 'bna', 'A05p05420' => 'bna', 'A05p39630' => 'bna', 'A05p39640' => 'bna', 'A09p00970' => 'bna', 'A09p53060' => 'bna', 'A10p31890' => 'bna', 'Aa31LG10G15040' => 'aar', 'Aa31LG1G21090' => 'aar', 'Aa31LG1G26900' => 'aar', 'Aa31LG3G1820' => 'aar', 'Aa31LG5G1100' => 'aar', 'Aa31LG6G4740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2265' => 'aag', 'Actinidia07998' => 'ach', 'Actinidia11266' => 'ach', 'Actinidia12682' => 'ach', 'Actinidia26479' => 'ach', 'Actinidia31406' => 'ach', 'Actinidia32437' => 'ach', 'Actinidia38862' => 'ach', 'Ah.05g174230' => 'amhyb', 'Ah.05g179070' => 'amhyb', 'Ah.05g179090' => 'amhyb', 'Ah.12g059950' => 'amhyb', 'AL3G20480' => 'aly', 'AL4G44520' => 'aly', 'AL5G43110' => 'aly', 'AL6G13890' => 'aly', 'AL6G52620' => 'aly', 'AL7G30830' => 'aly', 'Aqoxy1G00899' => 'aox', 'Aqoxy5G04333' => 'aox', 'Aqoxy7G00641' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3IZ0NN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4EF6AW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W9P8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79GA3M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C43NQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFCU6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G95YVJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCHK29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LU1UG8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX91RN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGB4B1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8DA0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9H7JI' => 'arhy', 'AT3G09320' => 'ath', 'AT3G60800' => 'ath', 'AT4G00840' => 'ath', 'AT4G22750' => 'ath', 'AT5G04270' => 'ath', 'ATR0090G003' => 'atr', 'ATR0559G349' => 'atr', 'ATR0680G261' => 'atr', 'ATR0810G048' => 'atr', 'Atru.chr12.831' => 'acertr', 'Atru.chr5.303' => 'acertr', 'Atru.chr5.748' => 'acertr', 'Atru.chr8.1999' => 'acertr', 'Atru.chr9.1436' => 'acertr', 'AUR62004211' => 'cqu', 'AUR62004548' => 'cqu', 'AUR62013637' => 'cqu', 'AUR62022662' => 'cqu', 'AUR62025777' => 'cqu', 'AUR62042386' => 'cqu', 'BcaB01g02310' => 'bca', 'BcaB01g06062' => 'bca', 'BcaB02g08975' => 'bca', 'BcaB02g08980' => 'bca', 'BcaC01g04228' => 'bca', 'BcaC01g06830' => 'bca', 'BcaC02g10186' => 'bca', 'BcaC02g12214' => 'bca', 'BcaC04g24101' => 'bca', 'BcaC05g29520' => 'bca', 'BcaC05g29661' => 'bca', 'BcaC06g32130' => 'bca', 'BcaC06g32131' => 'bca', 'BcaC07g40601' => 'bca', 'BcaC07g42641' => 'bca', 'BcaNung01038' => 'bca', 'BcaNung01676' => 'bca', 'BcaNung02480' => 'bca', 'BcaNung07376' => 'bca', 'BolC3t16146H' => 'bol', 'BolC3t16637H' => 'bol', 'BolC4t22257H' => 'bol', 'BolC4t24728H' => 'bol', 'BolC5t34517H' => 'bol', 'BolC7t45703H' => 'bol', 'BolC8t51166H' => 'bol', 'BolC9t53038H' => 'bol', 'BolC9t60000H' => 'bol', 'BraA01t01345Z' => 'bra', 'BraA01t01346Z' => 'bra', 'BraA01t01348Z' => 'bra', 'BraA03t12347Z' => 'bra', 'BraA03t12775Z' => 'bra', 'BraA03t14439Z' => 'bra', 'BraA04t15860Z' => 'bra', 'BraA05t19511Z' => 'bra', 'BraA05t22746Z' => 'bra', 'BraA09t35767Z' => 'bra', 'BraA09t40732Z' => 'bra', 'BraA10t45233Z' => 'bra', 'C03p38720' => 'bna', 'C03p43680' => 'bna', 'C04p06350' => 'bna', 'C04p31800' => 'bna', 'C05p58680' => 'bna', 'C07p52110' => 'bna', 'C08p35760' => 'bna', 'C09p01050' => 'bna', 'C09p72600' => 'bna', 'CAN.G106.2' => 'can', 'CAN.G1482.1' => 'can', 'CAN.G324.12' => 'can', 'CAN.G388.20' => 'can', 'CAN.G412.7' => 'can', 'CAN.G694.32' => 'can', 'CAN.G92.12' => 'can', 'CANSAT11G2353' => 'cansat', 'CANSAT21G1398' => 'cansat', 'CANSAT56G2456' => 'cansat', 'CANSAT56G3031' => 'cansat', 'CANSAT56G4539' => 'cansat', 'CARHR083680' => 'chi', 'CARHR171190' => 'chi', 'CARHR209010' => 'chi', 'CARHR229680' => 'chi', 'CARHR249490' => 'chi', 'Carub.0003s0844' => 'cru', 'Carub.0005s2755' => 'cru', 'Carub.0006s0322' => 'cru', 'Carub.0006s3586' => 'cru', 'Carub.0007s1855' => 'cru', 'Ca_07808_v3' => 'car', 'Ca_09535_v3' => 'car', 'Ca_10548_v3' => 'car', 'Ca_19913_v3' => 'car', 'Ca_19916_v3' => 'car', 'Ca_19975_v3' => 'car', 'CBR_g22876' => 'cbr', 'CBR_g22879' => 'cbr', 'CBR_g38491' => 'cbr', 'CBR_g54185' => 'cbr', 'CBR_g54190' => 'cbr', 'Cc02_g11020' => 'ccan', 'Cc02_g23920' => 'ccan', 'Cc02_g39860' => 'ccan', 'Cc02_g39870' => 'ccan', 'Cc03_g06760' => 'ccan', 'Cc06_g02450' => 'ccan', 'Cc09_g09450' => 'ccan', 'CDE02G1959' => 'cde', 'CDE04G0600' => 'cde', 'CDE07G1996' => 'cde', 'CDE07G2078' => 'cde', 'CDE11G0611' => 'cde', 'Cfa001683' => 'cfa', 'Cfa001734' => 'cfa', 'Cfa001737' => 'cfa', 'Cfa003751' => 'cfa', 'Cfa012019' => 'cfa', 'Cfa017353' => 'cfa', 'Cfa017732' => 'cfa', 'Cfa022464' => 'cfa', 'Ciclev10012400m.g' => 'ccl', 'Ciclev10021242m.g' => 'ccl', 'Ciclev10021302m.g' => 'ccl', 'Ciclev10021463m.g' => 'ccl', 'Ciclev10032359m.g' => 'ccl', 'CiPaw.01G081000' => 'cil', 'CiPaw.01G262500' => 'cil', 'CiPaw.01G269800' => 'cil', 'CiPaw.02G168400' => 'cil', 'CiPaw.05G119500' => 'cil', 'CiPaw.11G147300' => 'cil', 'ClCG01G003630' => 'cla', 'ClCG05G000510' => 'cla', 'ClCG05G002300' => 'cla', 'ClCG08G007650' => 'cla', 'ClCG10G021250' => 'cla', 'COL.COLO4_06218' => 'col', 'COL.COLO4_12538' => 'col', 'COL.COLO4_14775' => 'col', 'COL.COLO4_23875' => 'col', 'Cpa.g.sc141.16' => 'cpa', 'Cpa.g.sc169.16' => 'cpa', 'Cpa.g.sc244.4' => 'cpa', 'Cpa.g.sc244.5' => 'cpa', 'Cpa.g.sc29.87' => 'cpa', 'Cpa.g.sc53.115' => 'cpa', 'Cre03.g207502' => 'cre', 'Cre06.g277000' => 'cre', 'Cre09.g394050' => 'cre', 'CsaV3_3G007680' => 'csa', 'CsaV3_3G009710' => 'csa', 'CsaV3_3G034790' => 'csa', 'CsaV3_5G003750' => 'csa', 'CsaV3_6G036620' => 'csa', 'CSS0002288' => 'camsi', 'CSS0011250' => 'camsi', 'CSS0021619' => 'camsi', 'CSS0046701' => 'camsi', 'DCAR_006420' => 'dca', 'DCAR_006865' => 'dca', 'DCAR_008558' => 'dca', 'DCAR_028754' => 'dca', 'DCAR_028755' => 'dca', 'Dinv31218' => 'din', 'Dinv32371' => 'din', 'Dinv34250' => 'din', 'Dinv37156' => 'din', 'Dinv43704' => 'din', 'Duzib093G1811' => 'dzi', 'Duzib106G1622' => 'dzi', 'Duzib114G0504' => 'dzi', 'Duzib128G0338' => 'dzi', 'Duzib128G1577' => 'dzi', 'Duzib133G0104' => 'dzi', 'Duzib133G1080' => 'dzi', 'Duzib138G0324' => 'dzi', 'Duzib138G0394' => 'dzi', 'Duzib205G0122' => 'dzi', 'Duzib268G1020' => 'dzi', 'Duzib268G1359' => 'dzi', 'ECA232G3929' => 'eca', 'ECA236G2210' => 'eca', 'ECA236G2287' => 'eca', 'ECA240G4568' => 'eca', 'ECA247G0894' => 'eca', 'EL10Ac1g00200' => 'bvu', 'EL10Ac1g00886' => 'bvu', 'EL10As1g23091' => 'bvu', 'EL10As1g23092' => 'bvu', 'Eucgr.A01284' => 'egr', 'Eucgr.A01285' => 'egr', 'Eucgr.D02456' => 'egr', 'Eucgr.E00018' => 'egr', 'Eucgr.E01439' => 'egr', 'Eucgr.G02859' => 'egr', 'FAN01G0168' => 'fan', 'FAN01G0453' => 'fan', 'FAN01G2761' => 'fan', 'FAN02G1239' => 'fan', 'FAN03G0645' => 'fan', 'FAN03G2707' => 'fan', 'FAN03G2978' => 'fan', 'FAN04G0227' => 'fan', 'FAN06G0091' => 'fan', 'FAN06G1418' => 'fan', 'FAN06G1512' => 'fan', 'FAN06G1986' => 'fan', 'FAN06G2905' => 'fan', 'FAN06G4325' => 'fan', 'FAN08G0033' => 'fan', 'FAN09G0642' => 'fan', 'FAN10G1763' => 'fan', 'FAN10G2026' => 'fan', 'FAN10G2513' => 'fan', 'FAN10G3402' => 'fan', 'FAN10G3564' => 'fan', 'FAN10G3987' => 'fan', 'FAN13G1490' => 'fan', 'FAN14G5857' => 'fan', 'FAN18G1188' => 'fan', 'FvH4_5g00750' => 'fve', 'FvH4_6g13410' => 'fve', 'FvH4_7g11740' => 'fve', 'FvH4_7g17410' => 'fve', 'FvH4_7g18860' => 'fve', 'Glyma.01G099100' => 'gma', 'Glyma.01G142300' => 'gma', 'Glyma.03G025500' => 'gma', 'Glyma.03G069700' => 'gma', 'Glyma.03G260000' => 'gma', 'Glyma.09G269800' => 'gma', 'Glyma.10G208700' => 'gma', 'Glyma.18G220400' => 'gma', 'Glyma.20G182000' => 'gma', 'Gohir.A01G221726' => 'ghi', 'Gohir.A07G134600' => 'ghi', 'Gohir.A07G146000' => 'ghi', 'Gohir.A08G173900' => 'ghi', 'Gohir.A09G194900' => 'ghi', 'Gohir.A10G204100' => 'ghi', 'Gohir.A11G080600' => 'ghi', 'Gohir.A11G327500' => 'ghi', 'Gohir.A12G101800' => 'ghi', 'Gohir.D01G211200' => 'ghi', 'Gohir.D07G139200' => 'ghi', 'Gohir.D07G152100' => 'ghi', 'Gohir.D08G192600' => 'ghi', 'Gohir.D09G189200' => 'ghi', 'Gohir.D10G212000' => 'ghi', 'Gohir.D11G085200' => 'ghi', 'Gohir.D11G346400' => 'ghi', 'Gohir.D12G104800' => 'ghi', 'Gorai.001G151300' => 'gra', 'Gorai.001G174100' => 'gra', 'Gorai.002G257000' => 'gra', 'Gorai.004G202600' => 'gra', 'Gorai.007G090900' => 'gra', 'Gorai.007G376700' => 'gra', 'Gorai.008G114100' => 'gra', 'Gorai.011G237900' => 'gra', 'GSVIVG01005450001' => 'vvi', 'GSVIVG01016232001' => 'vvi', 'GSVIVG01026157001' => 'vvi', 'GSVIVG01027419001' => 'vvi', 'GSVIVG01027631001' => 'vvi', 'GSVIVG01034143001' => 'vvi', 'HanXRQChr03g0093921' => 'han', 'HanXRQChr04g0120001' => 'han', 'HanXRQChr04g0122561' => 'han', 'HanXRQChr09g0246851' => 'han', 'HanXRQChr10g0293311' => 'han', 'HanXRQChr13g0425231' => 'han', 'HanXRQChr16g0532571' => 'han', 'Haze_09050' => 'cav', 'Haze_15715' => 'cav', 'Haze_15716' => 'cav', 'Haze_16803' => 'cav', 'Haze_16850' => 'cav', 'Hma1.2p1_0301F.1_g118655' => 'hma', 'Hma1.2p1_0309F.1_g120590' => 'hma', 'Hma1.2p1_0936F.1_g238900' => 'hma', 'Hma1.2p1_3552F.1_g336740' => 'hma', 'HPP92_003520' => 'vpl', 'HPP92_006628' => 'vpl', 'HPP92_006645' => 'vpl', 'HPP92_014669' => 'vpl', 'HPP92_015077' => 'vpl', 'Hund16742' => 'sun', 'Hund17022' => 'sun', 'Lalb_Chr02g0152131' => 'lal', 'Lalb_Chr05g0225371' => 'lal', 'Lalb_Chr07g0189841' => 'lal', 'Lalb_Chr07g0192961' => 'lal', 'Lalb_Chr12g0208221' => 'lal', 'Lalb_Chr13g0291211' => 'lal', 'Lalb_Chr13g0291781' => 'lal', 'Lalb_Chr18g0044651' => 'lal', 'Lalb_Chr21g0313731' => 'lal', 'Lj1g0022533' => 'lja', 'Lj2A18T50' => 'lonja', 'Lj2A92G93' => 'lonja', 'Lj3A965T73' => 'lonja', 'Lj3g0000673' => 'lja', 'Lj3g0002666' => 'lja', 'Lj4g0016985' => 'lja', 'Lj5g0003625' => 'lja', 'Lj7A529G36' => 'lonja', 'Lj9A569T49' => 'lonja', 'Lj9A604T63' => 'lonja', 'Lsat_1_v5_gn_3_132060' => 'lsa', 'Lsat_1_v5_gn_4_68941' => 'lsa', 'Lsat_1_v5_gn_5_95580' => 'lsa', 'Lsat_1_v5_gn_7_161' => 'lsa', 'Lsat_1_v5_gn_7_7041' => 'lsa', 'Lsat_1_v5_gn_9_33481' => 'lsa', 'Lsat_1_v5_gn_9_68260' => 'lsa', 'Manes.01G073100' => 'mes', 'Manes.01G266300' => 'mes', 'Manes.02G033300' => 'mes', 'Manes.05G017900' => 'mes', 'Manes.05G046100' => 'mes', 'Manes.08G080900' => 'mes', 'Manes.10G049400' => 'mes', 'Mapoly0009s0186' => 'mpo', 'Mapoly0036s0118' => 'mpo', 'Mapoly0101s0046' => 'mpo', 'MBI04_g30218_MAGBIO' => 'mbi', 'MBI04_g35564_MAGBIO' => 'mbi', 'MBI12_g34011_MAGBIO' => 'mbi', 'MBI14_g04655_MAGBIO' => 'mbi', 'MCO07G653' => 'mco', 'MCO10G173' => 'mco', 'MD01G1087100' => 'mdo', 'MD01G1104200' => 'mdo', 'MD02G1205100' => 'mdo', 'MD04G1079200' => 'mdo', 'MD04G1131400' => 'mdo', 'MD07G1121600' => 'mdo', 'MD07G1157300' => 'mdo', 'MD07G1171000' => 'mdo', 'MD12G1144500' => 'mdo', 'Medtr1g094610' => 'mtr', 'Medtr4g021795' => 'mtr', 'Medtr4g023760' => 'mtr', 'Medtr7g118050' => 'mtr', 'MELO3C005582.2' => 'cme', 'MELO3C005989.2' => 'cme', 'MELO3C006192.2' => 'cme', 'MELO3C009248.2' => 'cme', 'MELO3C019817.2' => 'cme', 'Migut.B01625' => 'egut', 'Migut.B01915' => 'egut', 'Migut.F01721' => 'egut', 'Migut.J00314' => 'egut', 'MSTRG.20742' => 'ama', 'MSTRG.8134' => 'ama', 'Nitab4.5_0000096g0010' => 'nta', 'Nitab4.5_0000202g0030' => 'nta', 'Nitab4.5_0000216g0370' => 'nta', 'Nitab4.5_0000457g0230' => 'nta', 'Nitab4.5_0001702g0170' => 'nta', 'Nitab4.5_0003607g0010' => 'nta', 'Nitab4.5_0004917g0020' => 'nta', 'Nitab4.5_0007059g0010' => 'nta', 'Nitab4.5_0007184g0010' => 'nta', 'Nitab4.5_0007346g0020' => 'nta', 'Nn1g00410' => 'nnu', 'Nn1g01252' => 'nnu', 'Nn2g11168' => 'nnu', 'Nn2g13403' => 'nnu', 'Nn2g13760' => 'nnu', 'Nn4g26380' => 'nnu', 'Oeu000806.2' => 'oeu', 'Oeu005788.1' => 'oeu', 'Oeu006900.3' => 'oeu', 'Oeu007797.1' => 'oeu', 'Oeu011932.1' => 'oeu', 'Oeu022739.1' => 'oeu', 'Oeu037918.1' => 'oeu', 'Oeu055490.2' => 'oeu', 'Os01g0844400' => 'osa', 'Os02g0819100' => 'osa', 'Os03g0804300' => 'osa', 'Os05g0458000' => 'osa', 'Os07g0467800' => 'osa', 'Os12g0602200' => 'osa', 'Peaxi162Scf00013g03444' => 'pax', 'Peaxi162Scf00094g01120' => 'pax', 'Peaxi162Scf00191g01211' => 'pax', 'Peaxi162Scf00238g01110' => 'pax', 'Peaxi162Scf00330g00719' => 'pax', 'Peaxi162Scf00627g00018' => 'pax', 'PGR031G2686' => 'pgr', 'PGR042G0809' => 'pgr', 'PGR142G0193' => 'pgr', 'PGSC0003DMG400011066' => 'stu', 'PGSC0003DMG400012041' => 'stu', 'PGSC0003DMG400013678' => 'stu', 'PGSC0003DMG400023477' => 'stu', 'PGSC0003DMG400025956' => 'stu', 'PGSC0003DMG401019151' => 'stu', 'Phvul.006G116400' => 'pvu', 'Phvul.007G097300' => 'pvu', 'Phvul.010G015000' => 'pvu', 'Phvul.010G083900' => 'pvu', 'Potri.001G117100' => 'ptr', 'Potri.002G147300' => 'ptr', 'Potri.003G115600' => 'ptr', 'Potri.006G087400' => 'ptr', 'Potri.010G226100' => 'ptr', 'Potri.014G069200' => 'ptr', 'Potri.014G104000' => 'ptr', 'Potri.016G100200' => 'ptr', 'Pp3c10_20450' => 'ppa', 'Pp3c1_42400' => 'ppa', 'Pp3c3_24390' => 'ppa', 'Pp3c3_2860' => 'ppa', 'PRCOL_00003193' => 'pco', 'Prupe.2G144500' => 'ppe', 'Prupe.2G195700' => 'ppe', 'Prupe.2G209800' => 'ppe', 'Prupe.5G080000' => 'ppe', 'Prupe.6G257900' => 'ppe', 'Psat3g001160' => 'psa', 'Psat6g181880' => 'psa', 'Psat7g233720' => 'psa', 'PSO063G7587' => 'pso', 'PSO339G2145' => 'pso', 'PSO339G3369' => 'pso', 'PSO478G2747' => 'pso', 'PSO513G0140' => 'pso', 'PSO782G1614' => 'pso', 'PSO782G4889' => 'pso', 'PSO782G5485' => 'pso', 'PSO801G0241' => 'pso', 'QL07p048854' => 'qlo', 'QL08p046745' => 'qlo', 'QL08p052606' => 'qlo', 'QL08p053414' => 'qlo', 'QL08p054868' => 'qlo', 'RcHm_v2.0_Chr1g0350251' => 'rch', 'RcHm_v2.0_Chr1g0360851' => 'rch', 'RcHm_v2.0_Chr1g0362791' => 'rch', 'RcHm_v2.0_Chr3g0466281' => 'rch', 'RcHm_v2.0_Chr7g0201481' => 'rch', 'Rhsim01G0148600' => 'rsi', 'Rhsim05G0194400' => 'rsi', 'Rhsim07G0000700' => 'rsi', 'Rhsim07G0000800' => 'rsi', 'Rhsim07G0027900' => 'rsi', 'Rhsim09G0149500' => 'rsi', 'RhsimUnG0186900' => 'rsi', 'Sabra01G0089900' => 'sbr', 'Sabra02G0114700' => 'sbr', 'Sabra02G0116300' => 'sbr', 'Sabra03G0080100' => 'sbr', 'Sabra08G0024300' => 'sbr', 'Sabra10G0174300' => 'sbr', 'Sabra14G0048900' => 'sbr', 'Sabra14G0076500' => 'sbr', 'SalBow5G2513' => 'sbo', 'Sc01g0002300' => 'sci', 'Sc01g0004450' => 'sci', 'Sc06g0001680' => 'sci', 'Sc23g0003580' => 'sci', 'Sed0000913' => 'sed', 'Sed0001655' => 'sed', 'Sed0007745' => 'sed', 'Sed0010951' => 'sed', 'Sed0017599' => 'sed', 'Sed0021405' => 'sed', 'Sed0022810' => 'sed', 'SEGI_07099' => 'sgi', 'SEGI_11931' => 'sgi', 'SEGI_13187' => 'sgi', 'SEGI_29958' => 'sgi', 'SEGI_36351' => 'sgi', 'SGA_v2.0_scaffold126G33770' => 'sas', 'SGA_v2.0_scaffold153G37003' => 'sas', 'SGA_v2.0_scaffold2G01359' => 'sas', 'SGA_v2.0_scaffold5G03064' => 'sas', 'SGA_v2.0_scaffold95G28903' => 'sas', 'SHI12701' => 'shi', 'SHI26410' => 'shi', 'SHI38997' => 'shi', 'SHI53759' => 'shi', 'SHI53886' => 'shi', 'SHI54714' => 'shi', 'SMO011G0041' => 'smo', 'SMO146G0251' => 'smo', 'SMO160G0004' => 'smo', 'SMO174G0057' => 'smo', 'SMO244G0089' => 'smo', 'SMO296G0011' => 'smo', 'Solyc01g091280.3' => 'sly', 'Solyc05g047610.3' => 'sly', 'Solyc05g047640.3' => 'sly', 'Solyc05g055630.3' => 'sly', 'Solyc10g018160.2' => 'sly', 'Solyc10g084820.2' => 'sly', 'Solyc10g086565.2' => 'sly', 'Sopen01g037030' => 'spe', 'Sopen05g027920' => 'spe', 'Sopen05g034070' => 'spe', 'Sopen10g007260' => 'spe', 'Sopen10g034260' => 'spe', 'Sopen10g035950' => 'spe', 'Sp3g07710' => 'spa', 'Sp4g27420' => 'spa', 'Sp5g02450' => 'spa', 'Sp6g01280' => 'spa', 'Sp6g38480' => 'spa', 'Sp7g20780' => 'spa', 'TAR374G1413' => 'tar', 'TAR623G1777' => 'tar', 'TAR629G2370' => 'tar', 'TAR633G1759' => 'tar', 'TAR636G3387' => 'tar', 'THA.LOC104802447' => 'tha', 'THA.LOC104813916' => 'tha', 'THA.LOC104816423' => 'tha', 'THA.LOC104817246' => 'tha', 'THA.LOC104825895' => 'tha', 'Thecc.01G335200' => 'tca', 'Thecc.01G377400' => 'tca', 'Thecc.03G262200' => 'tca', 'Thecc.05G036800' => 'tca', 'Thecc.10G080500' => 'tca', 'Thecc.10G080800' => 'tca', 'Thhalv10001560m.g' => 'esa', 'Thhalv10006120m.g' => 'esa', 'Thhalv10014375m.g' => 'esa', 'Thhalv10021264m.g' => 'esa', 'Thhalv10028856m.g' => 'esa', 'TPR.G1914' => 'tpr', 'TPR.G4757' => 'tpr', 'TPR.G5595' => 'tpr', 'TWI14G0952' => 'twi', 'TWI14G1307' => 'twi', 'TWI38G2143' => 'twi', 'TWI59G0826' => 'twi', 'TWI77G0527' => 'twi', 'TWI81G0150' => 'twi', 'unitig_21.g21018' => 'ugi', 'unitig_26.g9725' => 'ugi', 'unitig_744.g24653' => 'ugi', 'unitig_749.g13778' => 'ugi', 'unitig_899.g15035' => 'ugi', 'vmacro04296' => 'vma', 'vmacro04852' => 'vma', 'vmacro13404' => 'vma', 'vmacro20169' => 'vma', 'vmacro21014' => 'vma', 'VMungo0331G0237' => 'vmu', 'VMungo0331G0706' => 'vmu', 'VMungo0331G1361' => 'vmu', 'VMungo0331G1489' => 'vmu', 'VMungo0540G1037' => 'vmu', 'VMungo0720G2487' => 'vmu', 'VMungo0720G2721' => 'vmu', 'Zm00001eb086860' => 'zma', 'Zm00001eb104760' => 'zma', 'Zm00001eb148220' => 'zma', 'Zm00001eb259030' => 'zma', 'Zm00001eb289590' => 'zma', 'Zm00001eb420150' => 'zma' ) $gf_id = 'HOM05D000968' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000968' ) $data_identifier = 'HOM05D000968' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 19, 'bol' => (int) 9, 'bra' => (int) 12, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 5, 'ccan' => (int) 7, 'cde' => (int) 5, 'cfa' => (int) 8, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 4, 'dca' => (int) 5, 'din' => (int) 5, 'dzi' => (int) 12, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 25, 'fve' => (int) 5, 'gma' => (int) 9, 'ghi' => (int) 18, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 7, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 5, 'sun' => (int) 2, 'lal' => (int) 9, 'lja' => (int) 5, 'lonja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 9, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 2, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 3, 'stu' => (int) 6, 'pvu' => (int) 4, 'ptr' => (int) 8, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 3, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 1, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 5, 'sas' => (int) 5, 'shi' => (int) 6, 'smo' => (int) 6, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 3, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420150' $species_info = array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ) $local_species = 'eca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000968', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p31690' => 'bna', 'A03p36040' => 'bna', 'A03p53730' => 'bna', 'A04p01410' => 'bna', 'A05p05420' => 'bna', 'A05p39630' => 'bna', 'A05p39640' => 'bna', 'A09p00970' => 'bna', 'A09p53060' => 'bna', 'A10p31890' => 'bna', 'Aa31LG10G15040' => 'aar', 'Aa31LG1G21090' => 'aar', 'Aa31LG1G26900' => 'aar', 'Aa31LG3G1820' => 'aar', 'Aa31LG5G1100' => 'aar', 'Aa31LG6G4740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2265' => 'aag', 'Actinidia07998' => 'ach', 'Actinidia11266' => 'ach', 'Actinidia12682' => 'ach', 'Actinidia26479' => 'ach', 'Actinidia31406' => 'ach', 'Actinidia32437' => 'ach', 'Actinidia38862' => 'ach', 'Ah.05g174230' => 'amhyb', 'Ah.05g179070' => 'amhyb', 'Ah.05g179090' => 'amhyb', 'Ah.12g059950' => 'amhyb', 'AL3G20480' => 'aly', 'AL4G44520' => 'aly', 'AL5G43110' => 'aly', 'AL6G13890' => 'aly', 'AL6G52620' => 'aly', 'AL7G30830' => 'aly', 'Aqoxy1G00899' => 'aox', 'Aqoxy5G04333' => 'aox', 'Aqoxy7G00641' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3IZ0NN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4EF6AW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W9P8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79GA3M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C43NQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFCU6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G95YVJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCHK29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LU1UG8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX91RN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGB4B1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8DA0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9H7JI' => 'arhy', 'AT3G09320' => 'ath', 'AT3G60800' => 'ath', 'AT4G00840' => 'ath', 'AT4G22750' => 'ath', 'AT5G04270' => 'ath', 'ATR0090G003' => 'atr', 'ATR0559G349' => 'atr', 'ATR0680G261' => 'atr', 'ATR0810G048' => 'atr', 'Atru.chr12.831' => 'acertr', 'Atru.chr5.303' => 'acertr', 'Atru.chr5.748' => 'acertr', 'Atru.chr8.1999' => 'acertr', 'Atru.chr9.1436' => 'acertr', 'AUR62004211' => 'cqu', 'AUR62004548' => 'cqu', 'AUR62013637' => 'cqu', 'AUR62022662' => 'cqu', 'AUR62025777' => 'cqu', 'AUR62042386' => 'cqu', 'BcaB01g02310' => 'bca', 'BcaB01g06062' => 'bca', 'BcaB02g08975' => 'bca', 'BcaB02g08980' => 'bca', 'BcaC01g04228' => 'bca', 'BcaC01g06830' => 'bca', 'BcaC02g10186' => 'bca', 'BcaC02g12214' => 'bca', 'BcaC04g24101' => 'bca', 'BcaC05g29520' => 'bca', 'BcaC05g29661' => 'bca', 'BcaC06g32130' => 'bca', 'BcaC06g32131' => 'bca', 'BcaC07g40601' => 'bca', 'BcaC07g42641' => 'bca', 'BcaNung01038' => 'bca', 'BcaNung01676' => 'bca', 'BcaNung02480' => 'bca', 'BcaNung07376' => 'bca', 'BolC3t16146H' => 'bol', 'BolC3t16637H' => 'bol', 'BolC4t22257H' => 'bol', 'BolC4t24728H' => 'bol', 'BolC5t34517H' => 'bol', 'BolC7t45703H' => 'bol', 'BolC8t51166H' => 'bol', 'BolC9t53038H' => 'bol', 'BolC9t60000H' => 'bol', 'BraA01t01345Z' => 'bra', 'BraA01t01346Z' => 'bra', 'BraA01t01348Z' => 'bra', 'BraA03t12347Z' => 'bra', 'BraA03t12775Z' => 'bra', 'BraA03t14439Z' => 'bra', 'BraA04t15860Z' => 'bra', 'BraA05t19511Z' => 'bra', 'BraA05t22746Z' => 'bra', 'BraA09t35767Z' => 'bra', 'BraA09t40732Z' => 'bra', 'BraA10t45233Z' => 'bra', 'C03p38720' => 'bna', 'C03p43680' => 'bna', 'C04p06350' => 'bna', 'C04p31800' => 'bna', 'C05p58680' => 'bna', 'C07p52110' => 'bna', 'C08p35760' => 'bna', 'C09p01050' => 'bna', 'C09p72600' => 'bna', 'CAN.G106.2' => 'can', 'CAN.G1482.1' => 'can', 'CAN.G324.12' => 'can', 'CAN.G388.20' => 'can', 'CAN.G412.7' => 'can', 'CAN.G694.32' => 'can', 'CAN.G92.12' => 'can', 'CANSAT11G2353' => 'cansat', 'CANSAT21G1398' => 'cansat', 'CANSAT56G2456' => 'cansat', 'CANSAT56G3031' => 'cansat', 'CANSAT56G4539' => 'cansat', 'CARHR083680' => 'chi', 'CARHR171190' => 'chi', 'CARHR209010' => 'chi', 'CARHR229680' => 'chi', 'CARHR249490' => 'chi', 'Carub.0003s0844' => 'cru', 'Carub.0005s2755' => 'cru', 'Carub.0006s0322' => 'cru', 'Carub.0006s3586' => 'cru', 'Carub.0007s1855' => 'cru', 'Ca_07808_v3' => 'car', 'Ca_09535_v3' => 'car', 'Ca_10548_v3' => 'car', 'Ca_19913_v3' => 'car', 'Ca_19916_v3' => 'car', 'Ca_19975_v3' => 'car', 'CBR_g22876' => 'cbr', 'CBR_g22879' => 'cbr', 'CBR_g38491' => 'cbr', 'CBR_g54185' => 'cbr', 'CBR_g54190' => 'cbr', 'Cc02_g11020' => 'ccan', 'Cc02_g23920' => 'ccan', 'Cc02_g39860' => 'ccan', 'Cc02_g39870' => 'ccan', 'Cc03_g06760' => 'ccan', 'Cc06_g02450' => 'ccan', 'Cc09_g09450' => 'ccan', 'CDE02G1959' => 'cde', 'CDE04G0600' => 'cde', 'CDE07G1996' => 'cde', 'CDE07G2078' => 'cde', 'CDE11G0611' => 'cde', 'Cfa001683' => 'cfa', 'Cfa001734' => 'cfa', 'Cfa001737' => 'cfa', 'Cfa003751' => 'cfa', 'Cfa012019' => 'cfa', 'Cfa017353' => 'cfa', 'Cfa017732' => 'cfa', 'Cfa022464' => 'cfa', 'Ciclev10012400m.g' => 'ccl', 'Ciclev10021242m.g' => 'ccl', 'Ciclev10021302m.g' => 'ccl', 'Ciclev10021463m.g' => 'ccl', 'Ciclev10032359m.g' => 'ccl', 'CiPaw.01G081000' => 'cil', 'CiPaw.01G262500' => 'cil', 'CiPaw.01G269800' => 'cil', 'CiPaw.02G168400' => 'cil', 'CiPaw.05G119500' => 'cil', 'CiPaw.11G147300' => 'cil', 'ClCG01G003630' => 'cla', 'ClCG05G000510' => 'cla', 'ClCG05G002300' => 'cla', 'ClCG08G007650' => 'cla', 'ClCG10G021250' => 'cla', 'COL.COLO4_06218' => 'col', 'COL.COLO4_12538' => 'col', 'COL.COLO4_14775' => 'col', 'COL.COLO4_23875' => 'col', 'Cpa.g.sc141.16' => 'cpa', 'Cpa.g.sc169.16' => 'cpa', 'Cpa.g.sc244.4' => 'cpa', 'Cpa.g.sc244.5' => 'cpa', 'Cpa.g.sc29.87' => 'cpa', 'Cpa.g.sc53.115' => 'cpa', 'Cre03.g207502' => 'cre', 'Cre06.g277000' => 'cre', 'Cre09.g394050' => 'cre', 'CsaV3_3G007680' => 'csa', 'CsaV3_3G009710' => 'csa', 'CsaV3_3G034790' => 'csa', 'CsaV3_5G003750' => 'csa', 'CsaV3_6G036620' => 'csa', 'CSS0002288' => 'camsi', 'CSS0011250' => 'camsi', 'CSS0021619' => 'camsi', 'CSS0046701' => 'camsi', 'DCAR_006420' => 'dca', 'DCAR_006865' => 'dca', 'DCAR_008558' => 'dca', 'DCAR_028754' => 'dca', 'DCAR_028755' => 'dca', 'Dinv31218' => 'din', 'Dinv32371' => 'din', 'Dinv34250' => 'din', 'Dinv37156' => 'din', 'Dinv43704' => 'din', 'Duzib093G1811' => 'dzi', 'Duzib106G1622' => 'dzi', 'Duzib114G0504' => 'dzi', 'Duzib128G0338' => 'dzi', 'Duzib128G1577' => 'dzi', 'Duzib133G0104' => 'dzi', 'Duzib133G1080' => 'dzi', 'Duzib138G0324' => 'dzi', 'Duzib138G0394' => 'dzi', 'Duzib205G0122' => 'dzi', 'Duzib268G1020' => 'dzi', 'Duzib268G1359' => 'dzi', 'ECA232G3929' => 'eca', 'ECA236G2210' => 'eca', 'ECA236G2287' => 'eca', 'ECA240G4568' => 'eca', 'ECA247G0894' => 'eca', 'EL10Ac1g00200' => 'bvu', 'EL10Ac1g00886' => 'bvu', 'EL10As1g23091' => 'bvu', 'EL10As1g23092' => 'bvu', 'Eucgr.A01284' => 'egr', 'Eucgr.A01285' => 'egr', 'Eucgr.D02456' => 'egr', 'Eucgr.E00018' => 'egr', 'Eucgr.E01439' => 'egr', 'Eucgr.G02859' => 'egr', 'FAN01G0168' => 'fan', 'FAN01G0453' => 'fan', 'FAN01G2761' => 'fan', 'FAN02G1239' => 'fan', 'FAN03G0645' => 'fan', 'FAN03G2707' => 'fan', 'FAN03G2978' => 'fan', 'FAN04G0227' => 'fan', 'FAN06G0091' => 'fan', 'FAN06G1418' => 'fan', 'FAN06G1512' => 'fan', 'FAN06G1986' => 'fan', 'FAN06G2905' => 'fan', 'FAN06G4325' => 'fan', 'FAN08G0033' => 'fan', 'FAN09G0642' => 'fan', 'FAN10G1763' => 'fan', 'FAN10G2026' => 'fan', 'FAN10G2513' => 'fan', 'FAN10G3402' => 'fan', 'FAN10G3564' => 'fan', 'FAN10G3987' => 'fan', 'FAN13G1490' => 'fan', 'FAN14G5857' => 'fan', 'FAN18G1188' => 'fan', 'FvH4_5g00750' => 'fve', 'FvH4_6g13410' => 'fve', 'FvH4_7g11740' => 'fve', 'FvH4_7g17410' => 'fve', 'FvH4_7g18860' => 'fve', 'Glyma.01G099100' => 'gma', 'Glyma.01G142300' => 'gma', 'Glyma.03G025500' => 'gma', 'Glyma.03G069700' => 'gma', 'Glyma.03G260000' => 'gma', 'Glyma.09G269800' => 'gma', 'Glyma.10G208700' => 'gma', 'Glyma.18G220400' => 'gma', 'Glyma.20G182000' => 'gma', 'Gohir.A01G221726' => 'ghi', 'Gohir.A07G134600' => 'ghi', 'Gohir.A07G146000' => 'ghi', 'Gohir.A08G173900' => 'ghi', 'Gohir.A09G194900' => 'ghi', 'Gohir.A10G204100' => 'ghi', 'Gohir.A11G080600' => 'ghi', 'Gohir.A11G327500' => 'ghi', 'Gohir.A12G101800' => 'ghi', 'Gohir.D01G211200' => 'ghi', 'Gohir.D07G139200' => 'ghi', 'Gohir.D07G152100' => 'ghi', 'Gohir.D08G192600' => 'ghi', 'Gohir.D09G189200' => 'ghi', 'Gohir.D10G212000' => 'ghi', 'Gohir.D11G085200' => 'ghi', 'Gohir.D11G346400' => 'ghi', 'Gohir.D12G104800' => 'ghi', 'Gorai.001G151300' => 'gra', 'Gorai.001G174100' => 'gra', 'Gorai.002G257000' => 'gra', 'Gorai.004G202600' => 'gra', 'Gorai.007G090900' => 'gra', 'Gorai.007G376700' => 'gra', 'Gorai.008G114100' => 'gra', 'Gorai.011G237900' => 'gra', 'GSVIVG01005450001' => 'vvi', 'GSVIVG01016232001' => 'vvi', 'GSVIVG01026157001' => 'vvi', 'GSVIVG01027419001' => 'vvi', 'GSVIVG01027631001' => 'vvi', 'GSVIVG01034143001' => 'vvi', 'HanXRQChr03g0093921' => 'han', 'HanXRQChr04g0120001' => 'han', 'HanXRQChr04g0122561' => 'han', 'HanXRQChr09g0246851' => 'han', 'HanXRQChr10g0293311' => 'han', 'HanXRQChr13g0425231' => 'han', 'HanXRQChr16g0532571' => 'han', 'Haze_09050' => 'cav', 'Haze_15715' => 'cav', 'Haze_15716' => 'cav', 'Haze_16803' => 'cav', 'Haze_16850' => 'cav', 'Hma1.2p1_0301F.1_g118655' => 'hma', 'Hma1.2p1_0309F.1_g120590' => 'hma', 'Hma1.2p1_0936F.1_g238900' => 'hma', 'Hma1.2p1_3552F.1_g336740' => 'hma', 'HPP92_003520' => 'vpl', 'HPP92_006628' => 'vpl', 'HPP92_006645' => 'vpl', 'HPP92_014669' => 'vpl', 'HPP92_015077' => 'vpl', 'Hund16742' => 'sun', 'Hund17022' => 'sun', 'Lalb_Chr02g0152131' => 'lal', 'Lalb_Chr05g0225371' => 'lal', 'Lalb_Chr07g0189841' => 'lal', 'Lalb_Chr07g0192961' => 'lal', 'Lalb_Chr12g0208221' => 'lal', 'Lalb_Chr13g0291211' => 'lal', 'Lalb_Chr13g0291781' => 'lal', 'Lalb_Chr18g0044651' => 'lal', 'Lalb_Chr21g0313731' => 'lal', 'Lj1g0022533' => 'lja', 'Lj2A18T50' => 'lonja', 'Lj2A92G93' => 'lonja', 'Lj3A965T73' => 'lonja', 'Lj3g0000673' => 'lja', 'Lj3g0002666' => 'lja', 'Lj4g0016985' => 'lja', 'Lj5g0003625' => 'lja', 'Lj7A529G36' => 'lonja', 'Lj9A569T49' => 'lonja', 'Lj9A604T63' => 'lonja', 'Lsat_1_v5_gn_3_132060' => 'lsa', 'Lsat_1_v5_gn_4_68941' => 'lsa', 'Lsat_1_v5_gn_5_95580' => 'lsa', 'Lsat_1_v5_gn_7_161' => 'lsa', 'Lsat_1_v5_gn_7_7041' => 'lsa', 'Lsat_1_v5_gn_9_33481' => 'lsa', 'Lsat_1_v5_gn_9_68260' => 'lsa', 'Manes.01G073100' => 'mes', 'Manes.01G266300' => 'mes', 'Manes.02G033300' => 'mes', 'Manes.05G017900' => 'mes', 'Manes.05G046100' => 'mes', 'Manes.08G080900' => 'mes', 'Manes.10G049400' => 'mes', 'Mapoly0009s0186' => 'mpo', 'Mapoly0036s0118' => 'mpo', 'Mapoly0101s0046' => 'mpo', 'MBI04_g30218_MAGBIO' => 'mbi', 'MBI04_g35564_MAGBIO' => 'mbi', 'MBI12_g34011_MAGBIO' => 'mbi', 'MBI14_g04655_MAGBIO' => 'mbi', 'MCO07G653' => 'mco', 'MCO10G173' => 'mco', 'MD01G1087100' => 'mdo', 'MD01G1104200' => 'mdo', 'MD02G1205100' => 'mdo', 'MD04G1079200' => 'mdo', 'MD04G1131400' => 'mdo', 'MD07G1121600' => 'mdo', 'MD07G1157300' => 'mdo', 'MD07G1171000' => 'mdo', 'MD12G1144500' => 'mdo', 'Medtr1g094610' => 'mtr', 'Medtr4g021795' => 'mtr', 'Medtr4g023760' => 'mtr', 'Medtr7g118050' => 'mtr', 'MELO3C005582.2' => 'cme', 'MELO3C005989.2' => 'cme', 'MELO3C006192.2' => 'cme', 'MELO3C009248.2' => 'cme', 'MELO3C019817.2' => 'cme', 'Migut.B01625' => 'egut', 'Migut.B01915' => 'egut', 'Migut.F01721' => 'egut', 'Migut.J00314' => 'egut', 'MSTRG.20742' => 'ama', 'MSTRG.8134' => 'ama', 'Nitab4.5_0000096g0010' => 'nta', 'Nitab4.5_0000202g0030' => 'nta', 'Nitab4.5_0000216g0370' => 'nta', 'Nitab4.5_0000457g0230' => 'nta', 'Nitab4.5_0001702g0170' => 'nta', 'Nitab4.5_0003607g0010' => 'nta', 'Nitab4.5_0004917g0020' => 'nta', 'Nitab4.5_0007059g0010' => 'nta', 'Nitab4.5_0007184g0010' => 'nta', 'Nitab4.5_0007346g0020' => 'nta', 'Nn1g00410' => 'nnu', 'Nn1g01252' => 'nnu', 'Nn2g11168' => 'nnu', 'Nn2g13403' => 'nnu', 'Nn2g13760' => 'nnu', 'Nn4g26380' => 'nnu', 'Oeu000806.2' => 'oeu', 'Oeu005788.1' => 'oeu', 'Oeu006900.3' => 'oeu', 'Oeu007797.1' => 'oeu', 'Oeu011932.1' => 'oeu', 'Oeu022739.1' => 'oeu', 'Oeu037918.1' => 'oeu', 'Oeu055490.2' => 'oeu', 'Os01g0844400' => 'osa', 'Os02g0819100' => 'osa', 'Os03g0804300' => 'osa', 'Os05g0458000' => 'osa', 'Os07g0467800' => 'osa', 'Os12g0602200' => 'osa', 'Peaxi162Scf00013g03444' => 'pax', 'Peaxi162Scf00094g01120' => 'pax', 'Peaxi162Scf00191g01211' => 'pax', 'Peaxi162Scf00238g01110' => 'pax', 'Peaxi162Scf00330g00719' => 'pax', 'Peaxi162Scf00627g00018' => 'pax', 'PGR031G2686' => 'pgr', 'PGR042G0809' => 'pgr', 'PGR142G0193' => 'pgr', 'PGSC0003DMG400011066' => 'stu', 'PGSC0003DMG400012041' => 'stu', 'PGSC0003DMG400013678' => 'stu', 'PGSC0003DMG400023477' => 'stu', 'PGSC0003DMG400025956' => 'stu', 'PGSC0003DMG401019151' => 'stu', 'Phvul.006G116400' => 'pvu', 'Phvul.007G097300' => 'pvu', 'Phvul.010G015000' => 'pvu', 'Phvul.010G083900' => 'pvu', 'Potri.001G117100' => 'ptr', 'Potri.002G147300' => 'ptr', 'Potri.003G115600' => 'ptr', 'Potri.006G087400' => 'ptr', 'Potri.010G226100' => 'ptr', 'Potri.014G069200' => 'ptr', 'Potri.014G104000' => 'ptr', 'Potri.016G100200' => 'ptr', 'Pp3c10_20450' => 'ppa', 'Pp3c1_42400' => 'ppa', 'Pp3c3_24390' => 'ppa', 'Pp3c3_2860' => 'ppa', 'PRCOL_00003193' => 'pco', 'Prupe.2G144500' => 'ppe', 'Prupe.2G195700' => 'ppe', 'Prupe.2G209800' => 'ppe', 'Prupe.5G080000' => 'ppe', 'Prupe.6G257900' => 'ppe', 'Psat3g001160' => 'psa', 'Psat6g181880' => 'psa', 'Psat7g233720' => 'psa', 'PSO063G7587' => 'pso', 'PSO339G2145' => 'pso', 'PSO339G3369' => 'pso', 'PSO478G2747' => 'pso', 'PSO513G0140' => 'pso', 'PSO782G1614' => 'pso', 'PSO782G4889' => 'pso', 'PSO782G5485' => 'pso', 'PSO801G0241' => 'pso', 'QL07p048854' => 'qlo', 'QL08p046745' => 'qlo', 'QL08p052606' => 'qlo', 'QL08p053414' => 'qlo', 'QL08p054868' => 'qlo', 'RcHm_v2.0_Chr1g0350251' => 'rch', 'RcHm_v2.0_Chr1g0360851' => 'rch', 'RcHm_v2.0_Chr1g0362791' => 'rch', 'RcHm_v2.0_Chr3g0466281' => 'rch', 'RcHm_v2.0_Chr7g0201481' => 'rch', 'Rhsim01G0148600' => 'rsi', 'Rhsim05G0194400' => 'rsi', 'Rhsim07G0000700' => 'rsi', 'Rhsim07G0000800' => 'rsi', 'Rhsim07G0027900' => 'rsi', 'Rhsim09G0149500' => 'rsi', 'RhsimUnG0186900' => 'rsi', 'Sabra01G0089900' => 'sbr', 'Sabra02G0114700' => 'sbr', 'Sabra02G0116300' => 'sbr', 'Sabra03G0080100' => 'sbr', 'Sabra08G0024300' => 'sbr', 'Sabra10G0174300' => 'sbr', 'Sabra14G0048900' => 'sbr', 'Sabra14G0076500' => 'sbr', 'SalBow5G2513' => 'sbo', 'Sc01g0002300' => 'sci', 'Sc01g0004450' => 'sci', 'Sc06g0001680' => 'sci', 'Sc23g0003580' => 'sci', 'Sed0000913' => 'sed', 'Sed0001655' => 'sed', 'Sed0007745' => 'sed', 'Sed0010951' => 'sed', 'Sed0017599' => 'sed', 'Sed0021405' => 'sed', 'Sed0022810' => 'sed', 'SEGI_07099' => 'sgi', 'SEGI_11931' => 'sgi', 'SEGI_13187' => 'sgi', 'SEGI_29958' => 'sgi', 'SEGI_36351' => 'sgi', 'SGA_v2.0_scaffold126G33770' => 'sas', 'SGA_v2.0_scaffold153G37003' => 'sas', 'SGA_v2.0_scaffold2G01359' => 'sas', 'SGA_v2.0_scaffold5G03064' => 'sas', 'SGA_v2.0_scaffold95G28903' => 'sas', 'SHI12701' => 'shi', 'SHI26410' => 'shi', 'SHI38997' => 'shi', 'SHI53759' => 'shi', 'SHI53886' => 'shi', 'SHI54714' => 'shi', 'SMO011G0041' => 'smo', 'SMO146G0251' => 'smo', 'SMO160G0004' => 'smo', 'SMO174G0057' => 'smo', 'SMO244G0089' => 'smo', 'SMO296G0011' => 'smo', 'Solyc01g091280.3' => 'sly', 'Solyc05g047610.3' => 'sly', 'Solyc05g047640.3' => 'sly', 'Solyc05g055630.3' => 'sly', 'Solyc10g018160.2' => 'sly', 'Solyc10g084820.2' => 'sly', 'Solyc10g086565.2' => 'sly', 'Sopen01g037030' => 'spe', 'Sopen05g027920' => 'spe', 'Sopen05g034070' => 'spe', 'Sopen10g007260' => 'spe', 'Sopen10g034260' => 'spe', 'Sopen10g035950' => 'spe', 'Sp3g07710' => 'spa', 'Sp4g27420' => 'spa', 'Sp5g02450' => 'spa', 'Sp6g01280' => 'spa', 'Sp6g38480' => 'spa', 'Sp7g20780' => 'spa', 'TAR374G1413' => 'tar', 'TAR623G1777' => 'tar', 'TAR629G2370' => 'tar', 'TAR633G1759' => 'tar', 'TAR636G3387' => 'tar', 'THA.LOC104802447' => 'tha', 'THA.LOC104813916' => 'tha', 'THA.LOC104816423' => 'tha', 'THA.LOC104817246' => 'tha', 'THA.LOC104825895' => 'tha', 'Thecc.01G335200' => 'tca', 'Thecc.01G377400' => 'tca', 'Thecc.03G262200' => 'tca', 'Thecc.05G036800' => 'tca', 'Thecc.10G080500' => 'tca', 'Thecc.10G080800' => 'tca', 'Thhalv10001560m.g' => 'esa', 'Thhalv10006120m.g' => 'esa', 'Thhalv10014375m.g' => 'esa', 'Thhalv10021264m.g' => 'esa', 'Thhalv10028856m.g' => 'esa', 'TPR.G1914' => 'tpr', 'TPR.G4757' => 'tpr', 'TPR.G5595' => 'tpr', 'TWI14G0952' => 'twi', 'TWI14G1307' => 'twi', 'TWI38G2143' => 'twi', 'TWI59G0826' => 'twi', 'TWI77G0527' => 'twi', 'TWI81G0150' => 'twi', 'unitig_21.g21018' => 'ugi', 'unitig_26.g9725' => 'ugi', 'unitig_744.g24653' => 'ugi', 'unitig_749.g13778' => 'ugi', 'unitig_899.g15035' => 'ugi', 'vmacro04296' => 'vma', 'vmacro04852' => 'vma', 'vmacro13404' => 'vma', 'vmacro20169' => 'vma', 'vmacro21014' => 'vma', 'VMungo0331G0237' => 'vmu', 'VMungo0331G0706' => 'vmu', 'VMungo0331G1361' => 'vmu', 'VMungo0331G1489' => 'vmu', 'VMungo0540G1037' => 'vmu', 'VMungo0720G2487' => 'vmu', 'VMungo0720G2721' => 'vmu', 'Zm00001eb086860' => 'zma', 'Zm00001eb104760' => 'zma', 'Zm00001eb148220' => 'zma', 'Zm00001eb259030' => 'zma', 'Zm00001eb289590' => 'zma', 'Zm00001eb420150' => 'zma' ), 'gf_id' => 'HOM05D000968', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000968' ), 'data_identifier' => 'HOM05D000968', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000968', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p31690' => 'bna', 'A03p36040' => 'bna', 'A03p53730' => 'bna', 'A04p01410' => 'bna', 'A05p05420' => 'bna', 'A05p39630' => 'bna', 'A05p39640' => 'bna', 'A09p00970' => 'bna', 'A09p53060' => 'bna', 'A10p31890' => 'bna', 'Aa31LG10G15040' => 'aar', 'Aa31LG1G21090' => 'aar', 'Aa31LG1G26900' => 'aar', 'Aa31LG3G1820' => 'aar', 'Aa31LG5G1100' => 'aar', 'Aa31LG6G4740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2265' => 'aag', 'Actinidia07998' => 'ach', 'Actinidia11266' => 'ach', 'Actinidia12682' => 'ach', 'Actinidia26479' => 'ach', 'Actinidia31406' => 'ach', 'Actinidia32437' => 'ach', 'Actinidia38862' => 'ach', 'Ah.05g174230' => 'amhyb', 'Ah.05g179070' => 'amhyb', 'Ah.05g179090' => 'amhyb', 'Ah.12g059950' => 'amhyb', 'AL3G20480' => 'aly', 'AL4G44520' => 'aly', 'AL5G43110' => 'aly', 'AL6G13890' => 'aly', 'AL6G52620' => 'aly', 'AL7G30830' => 'aly', 'Aqoxy1G00899' => 'aox', 'Aqoxy5G04333' => 'aox', 'Aqoxy7G00641' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3IZ0NN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4EF6AW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W9P8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79GA3M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C43NQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFCU6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G95YVJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCHK29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LU1UG8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX91RN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGB4B1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8DA0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9H7JI' => 'arhy', 'AT3G09320' => 'ath', 'AT3G60800' => 'ath', 'AT4G00840' => 'ath', 'AT4G22750' => 'ath', 'AT5G04270' => 'ath', 'ATR0090G003' => 'atr', 'ATR0559G349' => 'atr', 'ATR0680G261' => 'atr', 'ATR0810G048' => 'atr', 'Atru.chr12.831' => 'acertr', 'Atru.chr5.303' => 'acertr', 'Atru.chr5.748' => 'acertr', 'Atru.chr8.1999' => 'acertr', 'Atru.chr9.1436' => 'acertr', 'AUR62004211' => 'cqu', 'AUR62004548' => 'cqu', 'AUR62013637' => 'cqu', 'AUR62022662' => 'cqu', 'AUR62025777' => 'cqu', 'AUR62042386' => 'cqu', 'BcaB01g02310' => 'bca', 'BcaB01g06062' => 'bca', 'BcaB02g08975' => 'bca', 'BcaB02g08980' => 'bca', 'BcaC01g04228' => 'bca', 'BcaC01g06830' => 'bca', 'BcaC02g10186' => 'bca', 'BcaC02g12214' => 'bca', 'BcaC04g24101' => 'bca', 'BcaC05g29520' => 'bca', 'BcaC05g29661' => 'bca', 'BcaC06g32130' => 'bca', 'BcaC06g32131' => 'bca', 'BcaC07g40601' => 'bca', 'BcaC07g42641' => 'bca', 'BcaNung01038' => 'bca', 'BcaNung01676' => 'bca', 'BcaNung02480' => 'bca', 'BcaNung07376' => 'bca', 'BolC3t16146H' => 'bol', 'BolC3t16637H' => 'bol', 'BolC4t22257H' => 'bol', 'BolC4t24728H' => 'bol', 'BolC5t34517H' => 'bol', 'BolC7t45703H' => 'bol', 'BolC8t51166H' => 'bol', 'BolC9t53038H' => 'bol', 'BolC9t60000H' => 'bol', 'BraA01t01345Z' => 'bra', 'BraA01t01346Z' => 'bra', 'BraA01t01348Z' => 'bra', 'BraA03t12347Z' => 'bra', 'BraA03t12775Z' => 'bra', 'BraA03t14439Z' => 'bra', 'BraA04t15860Z' => 'bra', 'BraA05t19511Z' => 'bra', 'BraA05t22746Z' => 'bra', 'BraA09t35767Z' => 'bra', 'BraA09t40732Z' => 'bra', 'BraA10t45233Z' => 'bra', 'C03p38720' => 'bna', 'C03p43680' => 'bna', 'C04p06350' => 'bna', 'C04p31800' => 'bna', 'C05p58680' => 'bna', 'C07p52110' => 'bna', 'C08p35760' => 'bna', 'C09p01050' => 'bna', 'C09p72600' => 'bna', 'CAN.G106.2' => 'can', 'CAN.G1482.1' => 'can', 'CAN.G324.12' => 'can', 'CAN.G388.20' => 'can', 'CAN.G412.7' => 'can', 'CAN.G694.32' => 'can', 'CAN.G92.12' => 'can', 'CANSAT11G2353' => 'cansat', 'CANSAT21G1398' => 'cansat', 'CANSAT56G2456' => 'cansat', 'CANSAT56G3031' => 'cansat', 'CANSAT56G4539' => 'cansat', 'CARHR083680' => 'chi', 'CARHR171190' => 'chi', 'CARHR209010' => 'chi', 'CARHR229680' => 'chi', 'CARHR249490' => 'chi', 'Carub.0003s0844' => 'cru', 'Carub.0005s2755' => 'cru', 'Carub.0006s0322' => 'cru', 'Carub.0006s3586' => 'cru', 'Carub.0007s1855' => 'cru', 'Ca_07808_v3' => 'car', 'Ca_09535_v3' => 'car', 'Ca_10548_v3' => 'car', 'Ca_19913_v3' => 'car', 'Ca_19916_v3' => 'car', 'Ca_19975_v3' => 'car', 'CBR_g22876' => 'cbr', 'CBR_g22879' => 'cbr', 'CBR_g38491' => 'cbr', 'CBR_g54185' => 'cbr', 'CBR_g54190' => 'cbr', 'Cc02_g11020' => 'ccan', 'Cc02_g23920' => 'ccan', 'Cc02_g39860' => 'ccan', 'Cc02_g39870' => 'ccan', 'Cc03_g06760' => 'ccan', 'Cc06_g02450' => 'ccan', 'Cc09_g09450' => 'ccan', 'CDE02G1959' => 'cde', 'CDE04G0600' => 'cde', 'CDE07G1996' => 'cde', 'CDE07G2078' => 'cde', 'CDE11G0611' => 'cde', 'Cfa001683' => 'cfa', 'Cfa001734' => 'cfa', 'Cfa001737' => 'cfa', 'Cfa003751' => 'cfa', 'Cfa012019' => 'cfa', 'Cfa017353' => 'cfa', 'Cfa017732' => 'cfa', 'Cfa022464' => 'cfa', 'Ciclev10012400m.g' => 'ccl', 'Ciclev10021242m.g' => 'ccl', 'Ciclev10021302m.g' => 'ccl', 'Ciclev10021463m.g' => 'ccl', 'Ciclev10032359m.g' => 'ccl', 'CiPaw.01G081000' => 'cil', 'CiPaw.01G262500' => 'cil', 'CiPaw.01G269800' => 'cil', 'CiPaw.02G168400' => 'cil', 'CiPaw.05G119500' => 'cil', 'CiPaw.11G147300' => 'cil', 'ClCG01G003630' => 'cla', 'ClCG05G000510' => 'cla', 'ClCG05G002300' => 'cla', 'ClCG08G007650' => 'cla', 'ClCG10G021250' => 'cla', 'COL.COLO4_06218' => 'col', 'COL.COLO4_12538' => 'col', 'COL.COLO4_14775' => 'col', 'COL.COLO4_23875' => 'col', 'Cpa.g.sc141.16' => 'cpa', 'Cpa.g.sc169.16' => 'cpa', 'Cpa.g.sc244.4' => 'cpa', 'Cpa.g.sc244.5' => 'cpa', 'Cpa.g.sc29.87' => 'cpa', 'Cpa.g.sc53.115' => 'cpa', 'Cre03.g207502' => 'cre', 'Cre06.g277000' => 'cre', 'Cre09.g394050' => 'cre', 'CsaV3_3G007680' => 'csa', 'CsaV3_3G009710' => 'csa', 'CsaV3_3G034790' => 'csa', 'CsaV3_5G003750' => 'csa', 'CsaV3_6G036620' => 'csa', 'CSS0002288' => 'camsi', 'CSS0011250' => 'camsi', 'CSS0021619' => 'camsi', 'CSS0046701' => 'camsi', 'DCAR_006420' => 'dca', 'DCAR_006865' => 'dca', 'DCAR_008558' => 'dca', 'DCAR_028754' => 'dca', 'DCAR_028755' => 'dca', 'Dinv31218' => 'din', 'Dinv32371' => 'din', 'Dinv34250' => 'din', 'Dinv37156' => 'din', 'Dinv43704' => 'din', 'Duzib093G1811' => 'dzi', 'Duzib106G1622' => 'dzi', 'Duzib114G0504' => 'dzi', 'Duzib128G0338' => 'dzi', 'Duzib128G1577' => 'dzi', 'Duzib133G0104' => 'dzi', 'Duzib133G1080' => 'dzi', 'Duzib138G0324' => 'dzi', 'Duzib138G0394' => 'dzi', 'Duzib205G0122' => 'dzi', 'Duzib268G1020' => 'dzi', 'Duzib268G1359' => 'dzi', 'ECA232G3929' => 'eca', 'ECA236G2210' => 'eca', 'ECA236G2287' => 'eca', 'ECA240G4568' => 'eca', 'ECA247G0894' => 'eca', 'EL10Ac1g00200' => 'bvu', 'EL10Ac1g00886' => 'bvu', 'EL10As1g23091' => 'bvu', 'EL10As1g23092' => 'bvu', 'Eucgr.A01284' => 'egr', 'Eucgr.A01285' => 'egr', 'Eucgr.D02456' => 'egr', 'Eucgr.E00018' => 'egr', 'Eucgr.E01439' => 'egr', 'Eucgr.G02859' => 'egr', 'FAN01G0168' => 'fan', 'FAN01G0453' => 'fan', 'FAN01G2761' => 'fan', 'FAN02G1239' => 'fan', 'FAN03G0645' => 'fan', 'FAN03G2707' => 'fan', 'FAN03G2978' => 'fan', 'FAN04G0227' => 'fan', 'FAN06G0091' => 'fan', 'FAN06G1418' => 'fan', 'FAN06G1512' => 'fan', 'FAN06G1986' => 'fan', 'FAN06G2905' => 'fan', 'FAN06G4325' => 'fan', 'FAN08G0033' => 'fan', 'FAN09G0642' => 'fan', 'FAN10G1763' => 'fan', 'FAN10G2026' => 'fan', 'FAN10G2513' => 'fan', 'FAN10G3402' => 'fan', 'FAN10G3564' => 'fan', 'FAN10G3987' => 'fan', 'FAN13G1490' => 'fan', 'FAN14G5857' => 'fan', 'FAN18G1188' => 'fan', 'FvH4_5g00750' => 'fve', 'FvH4_6g13410' => 'fve', 'FvH4_7g11740' => 'fve', 'FvH4_7g17410' => 'fve', 'FvH4_7g18860' => 'fve', 'Glyma.01G099100' => 'gma', 'Glyma.01G142300' => 'gma', 'Glyma.03G025500' => 'gma', 'Glyma.03G069700' => 'gma', 'Glyma.03G260000' => 'gma', 'Glyma.09G269800' => 'gma', 'Glyma.10G208700' => 'gma', 'Glyma.18G220400' => 'gma', 'Glyma.20G182000' => 'gma', 'Gohir.A01G221726' => 'ghi', 'Gohir.A07G134600' => 'ghi', 'Gohir.A07G146000' => 'ghi', 'Gohir.A08G173900' => 'ghi', 'Gohir.A09G194900' => 'ghi', 'Gohir.A10G204100' => 'ghi', 'Gohir.A11G080600' => 'ghi', 'Gohir.A11G327500' => 'ghi', 'Gohir.A12G101800' => 'ghi', 'Gohir.D01G211200' => 'ghi', 'Gohir.D07G139200' => 'ghi', 'Gohir.D07G152100' => 'ghi', 'Gohir.D08G192600' => 'ghi', 'Gohir.D09G189200' => 'ghi', 'Gohir.D10G212000' => 'ghi', 'Gohir.D11G085200' => 'ghi', 'Gohir.D11G346400' => 'ghi', 'Gohir.D12G104800' => 'ghi', 'Gorai.001G151300' => 'gra', 'Gorai.001G174100' => 'gra', 'Gorai.002G257000' => 'gra', 'Gorai.004G202600' => 'gra', 'Gorai.007G090900' => 'gra', 'Gorai.007G376700' => 'gra', 'Gorai.008G114100' => 'gra', 'Gorai.011G237900' => 'gra', 'GSVIVG01005450001' => 'vvi', 'GSVIVG01016232001' => 'vvi', 'GSVIVG01026157001' => 'vvi', 'GSVIVG01027419001' => 'vvi', 'GSVIVG01027631001' => 'vvi', 'GSVIVG01034143001' => 'vvi', 'HanXRQChr03g0093921' => 'han', 'HanXRQChr04g0120001' => 'han', 'HanXRQChr04g0122561' => 'han', 'HanXRQChr09g0246851' => 'han', 'HanXRQChr10g0293311' => 'han', 'HanXRQChr13g0425231' => 'han', 'HanXRQChr16g0532571' => 'han', 'Haze_09050' => 'cav', 'Haze_15715' => 'cav', 'Haze_15716' => 'cav', 'Haze_16803' => 'cav', 'Haze_16850' => 'cav', 'Hma1.2p1_0301F.1_g118655' => 'hma', 'Hma1.2p1_0309F.1_g120590' => 'hma', 'Hma1.2p1_0936F.1_g238900' => 'hma', 'Hma1.2p1_3552F.1_g336740' => 'hma', 'HPP92_003520' => 'vpl', 'HPP92_006628' => 'vpl', 'HPP92_006645' => 'vpl', 'HPP92_014669' => 'vpl', 'HPP92_015077' => 'vpl', 'Hund16742' => 'sun', 'Hund17022' => 'sun', 'Lalb_Chr02g0152131' => 'lal', 'Lalb_Chr05g0225371' => 'lal', 'Lalb_Chr07g0189841' => 'lal', 'Lalb_Chr07g0192961' => 'lal', 'Lalb_Chr12g0208221' => 'lal', 'Lalb_Chr13g0291211' => 'lal', 'Lalb_Chr13g0291781' => 'lal', 'Lalb_Chr18g0044651' => 'lal', 'Lalb_Chr21g0313731' => 'lal', 'Lj1g0022533' => 'lja', 'Lj2A18T50' => 'lonja', 'Lj2A92G93' => 'lonja', 'Lj3A965T73' => 'lonja', 'Lj3g0000673' => 'lja', 'Lj3g0002666' => 'lja', 'Lj4g0016985' => 'lja', 'Lj5g0003625' => 'lja', 'Lj7A529G36' => 'lonja', 'Lj9A569T49' => 'lonja', 'Lj9A604T63' => 'lonja', 'Lsat_1_v5_gn_3_132060' => 'lsa', 'Lsat_1_v5_gn_4_68941' => 'lsa', 'Lsat_1_v5_gn_5_95580' => 'lsa', 'Lsat_1_v5_gn_7_161' => 'lsa', 'Lsat_1_v5_gn_7_7041' => 'lsa', 'Lsat_1_v5_gn_9_33481' => 'lsa', 'Lsat_1_v5_gn_9_68260' => 'lsa', 'Manes.01G073100' => 'mes', 'Manes.01G266300' => 'mes', 'Manes.02G033300' => 'mes', 'Manes.05G017900' => 'mes', 'Manes.05G046100' => 'mes', 'Manes.08G080900' => 'mes', 'Manes.10G049400' => 'mes', 'Mapoly0009s0186' => 'mpo', 'Mapoly0036s0118' => 'mpo', 'Mapoly0101s0046' => 'mpo', 'MBI04_g30218_MAGBIO' => 'mbi', 'MBI04_g35564_MAGBIO' => 'mbi', 'MBI12_g34011_MAGBIO' => 'mbi', 'MBI14_g04655_MAGBIO' => 'mbi', 'MCO07G653' => 'mco', 'MCO10G173' => 'mco', 'MD01G1087100' => 'mdo', 'MD01G1104200' => 'mdo', 'MD02G1205100' => 'mdo', 'MD04G1079200' => 'mdo', 'MD04G1131400' => 'mdo', 'MD07G1121600' => 'mdo', 'MD07G1157300' => 'mdo', 'MD07G1171000' => 'mdo', 'MD12G1144500' => 'mdo', 'Medtr1g094610' => 'mtr', 'Medtr4g021795' => 'mtr', 'Medtr4g023760' => 'mtr', 'Medtr7g118050' => 'mtr', 'MELO3C005582.2' => 'cme', 'MELO3C005989.2' => 'cme', 'MELO3C006192.2' => 'cme', 'MELO3C009248.2' => 'cme', 'MELO3C019817.2' => 'cme', 'Migut.B01625' => 'egut', 'Migut.B01915' => 'egut', 'Migut.F01721' => 'egut', 'Migut.J00314' => 'egut', 'MSTRG.20742' => 'ama', 'MSTRG.8134' => 'ama', 'Nitab4.5_0000096g0010' => 'nta', 'Nitab4.5_0000202g0030' => 'nta', 'Nitab4.5_0000216g0370' => 'nta', 'Nitab4.5_0000457g0230' => 'nta', 'Nitab4.5_0001702g0170' => 'nta', 'Nitab4.5_0003607g0010' => 'nta', 'Nitab4.5_0004917g0020' => 'nta', 'Nitab4.5_0007059g0010' => 'nta', 'Nitab4.5_0007184g0010' => 'nta', 'Nitab4.5_0007346g0020' => 'nta', 'Nn1g00410' => 'nnu', 'Nn1g01252' => 'nnu', 'Nn2g11168' => 'nnu', 'Nn2g13403' => 'nnu', 'Nn2g13760' => 'nnu', 'Nn4g26380' => 'nnu', 'Oeu000806.2' => 'oeu', 'Oeu005788.1' => 'oeu', 'Oeu006900.3' => 'oeu', 'Oeu007797.1' => 'oeu', 'Oeu011932.1' => 'oeu', 'Oeu022739.1' => 'oeu', 'Oeu037918.1' => 'oeu', 'Oeu055490.2' => 'oeu', 'Os01g0844400' => 'osa', 'Os02g0819100' => 'osa', 'Os03g0804300' => 'osa', 'Os05g0458000' => 'osa', 'Os07g0467800' => 'osa', 'Os12g0602200' => 'osa', 'Peaxi162Scf00013g03444' => 'pax', 'Peaxi162Scf00094g01120' => 'pax', 'Peaxi162Scf00191g01211' => 'pax', 'Peaxi162Scf00238g01110' => 'pax', 'Peaxi162Scf00330g00719' => 'pax', 'Peaxi162Scf00627g00018' => 'pax', 'PGR031G2686' => 'pgr', 'PGR042G0809' => 'pgr', 'PGR142G0193' => 'pgr', 'PGSC0003DMG400011066' => 'stu', 'PGSC0003DMG400012041' => 'stu', 'PGSC0003DMG400013678' => 'stu', 'PGSC0003DMG400023477' => 'stu', 'PGSC0003DMG400025956' => 'stu', 'PGSC0003DMG401019151' => 'stu', 'Phvul.006G116400' => 'pvu', 'Phvul.007G097300' => 'pvu', 'Phvul.010G015000' => 'pvu', 'Phvul.010G083900' => 'pvu', 'Potri.001G117100' => 'ptr', 'Potri.002G147300' => 'ptr', 'Potri.003G115600' => 'ptr', 'Potri.006G087400' => 'ptr', 'Potri.010G226100' => 'ptr', 'Potri.014G069200' => 'ptr', 'Potri.014G104000' => 'ptr', 'Potri.016G100200' => 'ptr', 'Pp3c10_20450' => 'ppa', 'Pp3c1_42400' => 'ppa', 'Pp3c3_24390' => 'ppa', 'Pp3c3_2860' => 'ppa', 'PRCOL_00003193' => 'pco', 'Prupe.2G144500' => 'ppe', 'Prupe.2G195700' => 'ppe', 'Prupe.2G209800' => 'ppe', 'Prupe.5G080000' => 'ppe', 'Prupe.6G257900' => 'ppe', 'Psat3g001160' => 'psa', 'Psat6g181880' => 'psa', 'Psat7g233720' => 'psa', 'PSO063G7587' => 'pso', 'PSO339G2145' => 'pso', 'PSO339G3369' => 'pso', 'PSO478G2747' => 'pso', 'PSO513G0140' => 'pso', 'PSO782G1614' => 'pso', 'PSO782G4889' => 'pso', 'PSO782G5485' => 'pso', 'PSO801G0241' => 'pso', 'QL07p048854' => 'qlo', 'QL08p046745' => 'qlo', 'QL08p052606' => 'qlo', 'QL08p053414' => 'qlo', 'QL08p054868' => 'qlo', 'RcHm_v2.0_Chr1g0350251' => 'rch', 'RcHm_v2.0_Chr1g0360851' => 'rch', 'RcHm_v2.0_Chr1g0362791' => 'rch', 'RcHm_v2.0_Chr3g0466281' => 'rch', 'RcHm_v2.0_Chr7g0201481' => 'rch', 'Rhsim01G0148600' => 'rsi', 'Rhsim05G0194400' => 'rsi', 'Rhsim07G0000700' => 'rsi', 'Rhsim07G0000800' => 'rsi', 'Rhsim07G0027900' => 'rsi', 'Rhsim09G0149500' => 'rsi', 'RhsimUnG0186900' => 'rsi', 'Sabra01G0089900' => 'sbr', 'Sabra02G0114700' => 'sbr', 'Sabra02G0116300' => 'sbr', 'Sabra03G0080100' => 'sbr', 'Sabra08G0024300' => 'sbr', 'Sabra10G0174300' => 'sbr', 'Sabra14G0048900' => 'sbr', 'Sabra14G0076500' => 'sbr', 'SalBow5G2513' => 'sbo', 'Sc01g0002300' => 'sci', 'Sc01g0004450' => 'sci', 'Sc06g0001680' => 'sci', 'Sc23g0003580' => 'sci', 'Sed0000913' => 'sed', 'Sed0001655' => 'sed', 'Sed0007745' => 'sed', 'Sed0010951' => 'sed', 'Sed0017599' => 'sed', 'Sed0021405' => 'sed', 'Sed0022810' => 'sed', 'SEGI_07099' => 'sgi', 'SEGI_11931' => 'sgi', 'SEGI_13187' => 'sgi', 'SEGI_29958' => 'sgi', 'SEGI_36351' => 'sgi', 'SGA_v2.0_scaffold126G33770' => 'sas', 'SGA_v2.0_scaffold153G37003' => 'sas', 'SGA_v2.0_scaffold2G01359' => 'sas', 'SGA_v2.0_scaffold5G03064' => 'sas', 'SGA_v2.0_scaffold95G28903' => 'sas', 'SHI12701' => 'shi', 'SHI26410' => 'shi', 'SHI38997' => 'shi', 'SHI53759' => 'shi', 'SHI53886' => 'shi', 'SHI54714' => 'shi', 'SMO011G0041' => 'smo', 'SMO146G0251' => 'smo', 'SMO160G0004' => 'smo', 'SMO174G0057' => 'smo', 'SMO244G0089' => 'smo', 'SMO296G0011' => 'smo', 'Solyc01g091280.3' => 'sly', 'Solyc05g047610.3' => 'sly', 'Solyc05g047640.3' => 'sly', 'Solyc05g055630.3' => 'sly', 'Solyc10g018160.2' => 'sly', 'Solyc10g084820.2' => 'sly', 'Solyc10g086565.2' => 'sly', 'Sopen01g037030' => 'spe', 'Sopen05g027920' => 'spe', 'Sopen05g034070' => 'spe', 'Sopen10g007260' => 'spe', 'Sopen10g034260' => 'spe', 'Sopen10g035950' => 'spe', 'Sp3g07710' => 'spa', 'Sp4g27420' => 'spa', 'Sp5g02450' => 'spa', 'Sp6g01280' => 'spa', 'Sp6g38480' => 'spa', 'Sp7g20780' => 'spa', 'TAR374G1413' => 'tar', 'TAR623G1777' => 'tar', 'TAR629G2370' => 'tar', 'TAR633G1759' => 'tar', 'TAR636G3387' => 'tar', 'THA.LOC104802447' => 'tha', 'THA.LOC104813916' => 'tha', 'THA.LOC104816423' => 'tha', 'THA.LOC104817246' => 'tha', 'THA.LOC104825895' => 'tha', 'Thecc.01G335200' => 'tca', 'Thecc.01G377400' => 'tca', 'Thecc.03G262200' => 'tca', 'Thecc.05G036800' => 'tca', 'Thecc.10G080500' => 'tca', 'Thecc.10G080800' => 'tca', 'Thhalv10001560m.g' => 'esa', 'Thhalv10006120m.g' => 'esa', 'Thhalv10014375m.g' => 'esa', 'Thhalv10021264m.g' => 'esa', 'Thhalv10028856m.g' => 'esa', 'TPR.G1914' => 'tpr', 'TPR.G4757' => 'tpr', 'TPR.G5595' => 'tpr', 'TWI14G0952' => 'twi', 'TWI14G1307' => 'twi', 'TWI38G2143' => 'twi', 'TWI59G0826' => 'twi', 'TWI77G0527' => 'twi', 'TWI81G0150' => 'twi', 'unitig_21.g21018' => 'ugi', 'unitig_26.g9725' => 'ugi', 'unitig_744.g24653' => 'ugi', 'unitig_749.g13778' => 'ugi', 'unitig_899.g15035' => 'ugi', 'vmacro04296' => 'vma', 'vmacro04852' => 'vma', 'vmacro13404' => 'vma', 'vmacro20169' => 'vma', 'vmacro21014' => 'vma', 'VMungo0331G0237' => 'vmu', 'VMungo0331G0706' => 'vmu', 'VMungo0331G1361' => 'vmu', 'VMungo0331G1489' => 'vmu', 'VMungo0540G1037' => 'vmu', 'VMungo0720G2487' => 'vmu', 'VMungo0720G2721' => 'vmu', 'Zm00001eb086860' => 'zma', 'Zm00001eb104760' => 'zma', 'Zm00001eb148220' => 'zma', 'Zm00001eb259030' => 'zma', 'Zm00001eb289590' => 'zma', 'Zm00001eb420150' => 'zma' ) $gf_id = 'HOM05D000968' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000968' ) $data_identifier = 'HOM05D000968' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 19, 'bol' => (int) 9, 'bra' => (int) 12, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 5, 'ccan' => (int) 7, 'cde' => (int) 5, 'cfa' => (int) 8, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 4, 'dca' => (int) 5, 'din' => (int) 5, 'dzi' => (int) 12, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 25, 'fve' => (int) 5, 'gma' => (int) 9, 'ghi' => (int) 18, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 7, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 5, 'sun' => (int) 2, 'lal' => (int) 9, 'lja' => (int) 5, 'lonja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 9, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 2, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 3, 'stu' => (int) 6, 'pvu' => (int) 4, 'ptr' => (int) 8, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 3, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 1, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 5, 'sas' => (int) 5, 'shi' => (int) 6, 'smo' => (int) 6, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 3, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420150' $species_info = array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ) $local_species = 'eca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000968', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p31690' => 'bna', 'A03p36040' => 'bna', 'A03p53730' => 'bna', 'A04p01410' => 'bna', 'A05p05420' => 'bna', 'A05p39630' => 'bna', 'A05p39640' => 'bna', 'A09p00970' => 'bna', 'A09p53060' => 'bna', 'A10p31890' => 'bna', 'Aa31LG10G15040' => 'aar', 'Aa31LG1G21090' => 'aar', 'Aa31LG1G26900' => 'aar', 'Aa31LG3G1820' => 'aar', 'Aa31LG5G1100' => 'aar', 'Aa31LG6G4740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2265' => 'aag', 'Actinidia07998' => 'ach', 'Actinidia11266' => 'ach', 'Actinidia12682' => 'ach', 'Actinidia26479' => 'ach', 'Actinidia31406' => 'ach', 'Actinidia32437' => 'ach', 'Actinidia38862' => 'ach', 'Ah.05g174230' => 'amhyb', 'Ah.05g179070' => 'amhyb', 'Ah.05g179090' => 'amhyb', 'Ah.12g059950' => 'amhyb', 'AL3G20480' => 'aly', 'AL4G44520' => 'aly', 'AL5G43110' => 'aly', 'AL6G13890' => 'aly', 'AL6G52620' => 'aly', 'AL7G30830' => 'aly', 'Aqoxy1G00899' => 'aox', 'Aqoxy5G04333' => 'aox', 'Aqoxy7G00641' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3IZ0NN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4EF6AW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W9P8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79GA3M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C43NQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFCU6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G95YVJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCHK29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LU1UG8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX91RN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGB4B1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8DA0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9H7JI' => 'arhy', 'AT3G09320' => 'ath', 'AT3G60800' => 'ath', 'AT4G00840' => 'ath', 'AT4G22750' => 'ath', 'AT5G04270' => 'ath', 'ATR0090G003' => 'atr', 'ATR0559G349' => 'atr', 'ATR0680G261' => 'atr', 'ATR0810G048' => 'atr', 'Atru.chr12.831' => 'acertr', 'Atru.chr5.303' => 'acertr', 'Atru.chr5.748' => 'acertr', 'Atru.chr8.1999' => 'acertr', 'Atru.chr9.1436' => 'acertr', 'AUR62004211' => 'cqu', 'AUR62004548' => 'cqu', 'AUR62013637' => 'cqu', 'AUR62022662' => 'cqu', 'AUR62025777' => 'cqu', 'AUR62042386' => 'cqu', 'BcaB01g02310' => 'bca', 'BcaB01g06062' => 'bca', 'BcaB02g08975' => 'bca', 'BcaB02g08980' => 'bca', 'BcaC01g04228' => 'bca', 'BcaC01g06830' => 'bca', 'BcaC02g10186' => 'bca', 'BcaC02g12214' => 'bca', 'BcaC04g24101' => 'bca', 'BcaC05g29520' => 'bca', 'BcaC05g29661' => 'bca', 'BcaC06g32130' => 'bca', 'BcaC06g32131' => 'bca', 'BcaC07g40601' => 'bca', 'BcaC07g42641' => 'bca', 'BcaNung01038' => 'bca', 'BcaNung01676' => 'bca', 'BcaNung02480' => 'bca', 'BcaNung07376' => 'bca', 'BolC3t16146H' => 'bol', 'BolC3t16637H' => 'bol', 'BolC4t22257H' => 'bol', 'BolC4t24728H' => 'bol', 'BolC5t34517H' => 'bol', 'BolC7t45703H' => 'bol', 'BolC8t51166H' => 'bol', 'BolC9t53038H' => 'bol', 'BolC9t60000H' => 'bol', 'BraA01t01345Z' => 'bra', 'BraA01t01346Z' => 'bra', 'BraA01t01348Z' => 'bra', 'BraA03t12347Z' => 'bra', 'BraA03t12775Z' => 'bra', 'BraA03t14439Z' => 'bra', 'BraA04t15860Z' => 'bra', 'BraA05t19511Z' => 'bra', 'BraA05t22746Z' => 'bra', 'BraA09t35767Z' => 'bra', 'BraA09t40732Z' => 'bra', 'BraA10t45233Z' => 'bra', 'C03p38720' => 'bna', 'C03p43680' => 'bna', 'C04p06350' => 'bna', 'C04p31800' => 'bna', 'C05p58680' => 'bna', 'C07p52110' => 'bna', 'C08p35760' => 'bna', 'C09p01050' => 'bna', 'C09p72600' => 'bna', 'CAN.G106.2' => 'can', 'CAN.G1482.1' => 'can', 'CAN.G324.12' => 'can', 'CAN.G388.20' => 'can', 'CAN.G412.7' => 'can', 'CAN.G694.32' => 'can', 'CAN.G92.12' => 'can', 'CANSAT11G2353' => 'cansat', 'CANSAT21G1398' => 'cansat', 'CANSAT56G2456' => 'cansat', 'CANSAT56G3031' => 'cansat', 'CANSAT56G4539' => 'cansat', 'CARHR083680' => 'chi', 'CARHR171190' => 'chi', 'CARHR209010' => 'chi', 'CARHR229680' => 'chi', 'CARHR249490' => 'chi', 'Carub.0003s0844' => 'cru', 'Carub.0005s2755' => 'cru', 'Carub.0006s0322' => 'cru', 'Carub.0006s3586' => 'cru', 'Carub.0007s1855' => 'cru', 'Ca_07808_v3' => 'car', 'Ca_09535_v3' => 'car', 'Ca_10548_v3' => 'car', 'Ca_19913_v3' => 'car', 'Ca_19916_v3' => 'car', 'Ca_19975_v3' => 'car', 'CBR_g22876' => 'cbr', 'CBR_g22879' => 'cbr', 'CBR_g38491' => 'cbr', 'CBR_g54185' => 'cbr', 'CBR_g54190' => 'cbr', 'Cc02_g11020' => 'ccan', 'Cc02_g23920' => 'ccan', 'Cc02_g39860' => 'ccan', 'Cc02_g39870' => 'ccan', 'Cc03_g06760' => 'ccan', 'Cc06_g02450' => 'ccan', 'Cc09_g09450' => 'ccan', 'CDE02G1959' => 'cde', 'CDE04G0600' => 'cde', 'CDE07G1996' => 'cde', 'CDE07G2078' => 'cde', 'CDE11G0611' => 'cde', 'Cfa001683' => 'cfa', 'Cfa001734' => 'cfa', 'Cfa001737' => 'cfa', 'Cfa003751' => 'cfa', 'Cfa012019' => 'cfa', 'Cfa017353' => 'cfa', 'Cfa017732' => 'cfa', 'Cfa022464' => 'cfa', 'Ciclev10012400m.g' => 'ccl', 'Ciclev10021242m.g' => 'ccl', 'Ciclev10021302m.g' => 'ccl', 'Ciclev10021463m.g' => 'ccl', 'Ciclev10032359m.g' => 'ccl', 'CiPaw.01G081000' => 'cil', 'CiPaw.01G262500' => 'cil', 'CiPaw.01G269800' => 'cil', 'CiPaw.02G168400' => 'cil', 'CiPaw.05G119500' => 'cil', 'CiPaw.11G147300' => 'cil', 'ClCG01G003630' => 'cla', 'ClCG05G000510' => 'cla', 'ClCG05G002300' => 'cla', 'ClCG08G007650' => 'cla', 'ClCG10G021250' => 'cla', 'COL.COLO4_06218' => 'col', 'COL.COLO4_12538' => 'col', 'COL.COLO4_14775' => 'col', 'COL.COLO4_23875' => 'col', 'Cpa.g.sc141.16' => 'cpa', 'Cpa.g.sc169.16' => 'cpa', 'Cpa.g.sc244.4' => 'cpa', 'Cpa.g.sc244.5' => 'cpa', 'Cpa.g.sc29.87' => 'cpa', 'Cpa.g.sc53.115' => 'cpa', 'Cre03.g207502' => 'cre', 'Cre06.g277000' => 'cre', 'Cre09.g394050' => 'cre', 'CsaV3_3G007680' => 'csa', 'CsaV3_3G009710' => 'csa', 'CsaV3_3G034790' => 'csa', 'CsaV3_5G003750' => 'csa', 'CsaV3_6G036620' => 'csa', 'CSS0002288' => 'camsi', 'CSS0011250' => 'camsi', 'CSS0021619' => 'camsi', 'CSS0046701' => 'camsi', 'DCAR_006420' => 'dca', 'DCAR_006865' => 'dca', 'DCAR_008558' => 'dca', 'DCAR_028754' => 'dca', 'DCAR_028755' => 'dca', 'Dinv31218' => 'din', 'Dinv32371' => 'din', 'Dinv34250' => 'din', 'Dinv37156' => 'din', 'Dinv43704' => 'din', 'Duzib093G1811' => 'dzi', 'Duzib106G1622' => 'dzi', 'Duzib114G0504' => 'dzi', 'Duzib128G0338' => 'dzi', 'Duzib128G1577' => 'dzi', 'Duzib133G0104' => 'dzi', 'Duzib133G1080' => 'dzi', 'Duzib138G0324' => 'dzi', 'Duzib138G0394' => 'dzi', 'Duzib205G0122' => 'dzi', 'Duzib268G1020' => 'dzi', 'Duzib268G1359' => 'dzi', 'ECA232G3929' => 'eca', 'ECA236G2210' => 'eca', 'ECA236G2287' => 'eca', 'ECA240G4568' => 'eca', 'ECA247G0894' => 'eca', 'EL10Ac1g00200' => 'bvu', 'EL10Ac1g00886' => 'bvu', 'EL10As1g23091' => 'bvu', 'EL10As1g23092' => 'bvu', 'Eucgr.A01284' => 'egr', 'Eucgr.A01285' => 'egr', 'Eucgr.D02456' => 'egr', 'Eucgr.E00018' => 'egr', 'Eucgr.E01439' => 'egr', 'Eucgr.G02859' => 'egr', 'FAN01G0168' => 'fan', 'FAN01G0453' => 'fan', 'FAN01G2761' => 'fan', 'FAN02G1239' => 'fan', 'FAN03G0645' => 'fan', 'FAN03G2707' => 'fan', 'FAN03G2978' => 'fan', 'FAN04G0227' => 'fan', 'FAN06G0091' => 'fan', 'FAN06G1418' => 'fan', 'FAN06G1512' => 'fan', 'FAN06G1986' => 'fan', 'FAN06G2905' => 'fan', 'FAN06G4325' => 'fan', 'FAN08G0033' => 'fan', 'FAN09G0642' => 'fan', 'FAN10G1763' => 'fan', 'FAN10G2026' => 'fan', 'FAN10G2513' => 'fan', 'FAN10G3402' => 'fan', 'FAN10G3564' => 'fan', 'FAN10G3987' => 'fan', 'FAN13G1490' => 'fan', 'FAN14G5857' => 'fan', 'FAN18G1188' => 'fan', 'FvH4_5g00750' => 'fve', 'FvH4_6g13410' => 'fve', 'FvH4_7g11740' => 'fve', 'FvH4_7g17410' => 'fve', 'FvH4_7g18860' => 'fve', 'Glyma.01G099100' => 'gma', 'Glyma.01G142300' => 'gma', 'Glyma.03G025500' => 'gma', 'Glyma.03G069700' => 'gma', 'Glyma.03G260000' => 'gma', 'Glyma.09G269800' => 'gma', 'Glyma.10G208700' => 'gma', 'Glyma.18G220400' => 'gma', 'Glyma.20G182000' => 'gma', 'Gohir.A01G221726' => 'ghi', 'Gohir.A07G134600' => 'ghi', 'Gohir.A07G146000' => 'ghi', 'Gohir.A08G173900' => 'ghi', 'Gohir.A09G194900' => 'ghi', 'Gohir.A10G204100' => 'ghi', 'Gohir.A11G080600' => 'ghi', 'Gohir.A11G327500' => 'ghi', 'Gohir.A12G101800' => 'ghi', 'Gohir.D01G211200' => 'ghi', 'Gohir.D07G139200' => 'ghi', 'Gohir.D07G152100' => 'ghi', 'Gohir.D08G192600' => 'ghi', 'Gohir.D09G189200' => 'ghi', 'Gohir.D10G212000' => 'ghi', 'Gohir.D11G085200' => 'ghi', 'Gohir.D11G346400' => 'ghi', 'Gohir.D12G104800' => 'ghi', 'Gorai.001G151300' => 'gra', 'Gorai.001G174100' => 'gra', 'Gorai.002G257000' => 'gra', 'Gorai.004G202600' => 'gra', 'Gorai.007G090900' => 'gra', 'Gorai.007G376700' => 'gra', 'Gorai.008G114100' => 'gra', 'Gorai.011G237900' => 'gra', 'GSVIVG01005450001' => 'vvi', 'GSVIVG01016232001' => 'vvi', 'GSVIVG01026157001' => 'vvi', 'GSVIVG01027419001' => 'vvi', 'GSVIVG01027631001' => 'vvi', 'GSVIVG01034143001' => 'vvi', 'HanXRQChr03g0093921' => 'han', 'HanXRQChr04g0120001' => 'han', 'HanXRQChr04g0122561' => 'han', 'HanXRQChr09g0246851' => 'han', 'HanXRQChr10g0293311' => 'han', 'HanXRQChr13g0425231' => 'han', 'HanXRQChr16g0532571' => 'han', 'Haze_09050' => 'cav', 'Haze_15715' => 'cav', 'Haze_15716' => 'cav', 'Haze_16803' => 'cav', 'Haze_16850' => 'cav', 'Hma1.2p1_0301F.1_g118655' => 'hma', 'Hma1.2p1_0309F.1_g120590' => 'hma', 'Hma1.2p1_0936F.1_g238900' => 'hma', 'Hma1.2p1_3552F.1_g336740' => 'hma', 'HPP92_003520' => 'vpl', 'HPP92_006628' => 'vpl', 'HPP92_006645' => 'vpl', 'HPP92_014669' => 'vpl', 'HPP92_015077' => 'vpl', 'Hund16742' => 'sun', 'Hund17022' => 'sun', 'Lalb_Chr02g0152131' => 'lal', 'Lalb_Chr05g0225371' => 'lal', 'Lalb_Chr07g0189841' => 'lal', 'Lalb_Chr07g0192961' => 'lal', 'Lalb_Chr12g0208221' => 'lal', 'Lalb_Chr13g0291211' => 'lal', 'Lalb_Chr13g0291781' => 'lal', 'Lalb_Chr18g0044651' => 'lal', 'Lalb_Chr21g0313731' => 'lal', 'Lj1g0022533' => 'lja', 'Lj2A18T50' => 'lonja', 'Lj2A92G93' => 'lonja', 'Lj3A965T73' => 'lonja', 'Lj3g0000673' => 'lja', 'Lj3g0002666' => 'lja', 'Lj4g0016985' => 'lja', 'Lj5g0003625' => 'lja', 'Lj7A529G36' => 'lonja', 'Lj9A569T49' => 'lonja', 'Lj9A604T63' => 'lonja', 'Lsat_1_v5_gn_3_132060' => 'lsa', 'Lsat_1_v5_gn_4_68941' => 'lsa', 'Lsat_1_v5_gn_5_95580' => 'lsa', 'Lsat_1_v5_gn_7_161' => 'lsa', 'Lsat_1_v5_gn_7_7041' => 'lsa', 'Lsat_1_v5_gn_9_33481' => 'lsa', 'Lsat_1_v5_gn_9_68260' => 'lsa', 'Manes.01G073100' => 'mes', 'Manes.01G266300' => 'mes', 'Manes.02G033300' => 'mes', 'Manes.05G017900' => 'mes', 'Manes.05G046100' => 'mes', 'Manes.08G080900' => 'mes', 'Manes.10G049400' => 'mes', 'Mapoly0009s0186' => 'mpo', 'Mapoly0036s0118' => 'mpo', 'Mapoly0101s0046' => 'mpo', 'MBI04_g30218_MAGBIO' => 'mbi', 'MBI04_g35564_MAGBIO' => 'mbi', 'MBI12_g34011_MAGBIO' => 'mbi', 'MBI14_g04655_MAGBIO' => 'mbi', 'MCO07G653' => 'mco', 'MCO10G173' => 'mco', 'MD01G1087100' => 'mdo', 'MD01G1104200' => 'mdo', 'MD02G1205100' => 'mdo', 'MD04G1079200' => 'mdo', 'MD04G1131400' => 'mdo', 'MD07G1121600' => 'mdo', 'MD07G1157300' => 'mdo', 'MD07G1171000' => 'mdo', 'MD12G1144500' => 'mdo', 'Medtr1g094610' => 'mtr', 'Medtr4g021795' => 'mtr', 'Medtr4g023760' => 'mtr', 'Medtr7g118050' => 'mtr', 'MELO3C005582.2' => 'cme', 'MELO3C005989.2' => 'cme', 'MELO3C006192.2' => 'cme', 'MELO3C009248.2' => 'cme', 'MELO3C019817.2' => 'cme', 'Migut.B01625' => 'egut', 'Migut.B01915' => 'egut', 'Migut.F01721' => 'egut', 'Migut.J00314' => 'egut', 'MSTRG.20742' => 'ama', 'MSTRG.8134' => 'ama', 'Nitab4.5_0000096g0010' => 'nta', 'Nitab4.5_0000202g0030' => 'nta', 'Nitab4.5_0000216g0370' => 'nta', 'Nitab4.5_0000457g0230' => 'nta', 'Nitab4.5_0001702g0170' => 'nta', 'Nitab4.5_0003607g0010' => 'nta', 'Nitab4.5_0004917g0020' => 'nta', 'Nitab4.5_0007059g0010' => 'nta', 'Nitab4.5_0007184g0010' => 'nta', 'Nitab4.5_0007346g0020' => 'nta', 'Nn1g00410' => 'nnu', 'Nn1g01252' => 'nnu', 'Nn2g11168' => 'nnu', 'Nn2g13403' => 'nnu', 'Nn2g13760' => 'nnu', 'Nn4g26380' => 'nnu', 'Oeu000806.2' => 'oeu', 'Oeu005788.1' => 'oeu', 'Oeu006900.3' => 'oeu', 'Oeu007797.1' => 'oeu', 'Oeu011932.1' => 'oeu', 'Oeu022739.1' => 'oeu', 'Oeu037918.1' => 'oeu', 'Oeu055490.2' => 'oeu', 'Os01g0844400' => 'osa', 'Os02g0819100' => 'osa', 'Os03g0804300' => 'osa', 'Os05g0458000' => 'osa', 'Os07g0467800' => 'osa', 'Os12g0602200' => 'osa', 'Peaxi162Scf00013g03444' => 'pax', 'Peaxi162Scf00094g01120' => 'pax', 'Peaxi162Scf00191g01211' => 'pax', 'Peaxi162Scf00238g01110' => 'pax', 'Peaxi162Scf00330g00719' => 'pax', 'Peaxi162Scf00627g00018' => 'pax', 'PGR031G2686' => 'pgr', 'PGR042G0809' => 'pgr', 'PGR142G0193' => 'pgr', 'PGSC0003DMG400011066' => 'stu', 'PGSC0003DMG400012041' => 'stu', 'PGSC0003DMG400013678' => 'stu', 'PGSC0003DMG400023477' => 'stu', 'PGSC0003DMG400025956' => 'stu', 'PGSC0003DMG401019151' => 'stu', 'Phvul.006G116400' => 'pvu', 'Phvul.007G097300' => 'pvu', 'Phvul.010G015000' => 'pvu', 'Phvul.010G083900' => 'pvu', 'Potri.001G117100' => 'ptr', 'Potri.002G147300' => 'ptr', 'Potri.003G115600' => 'ptr', 'Potri.006G087400' => 'ptr', 'Potri.010G226100' => 'ptr', 'Potri.014G069200' => 'ptr', 'Potri.014G104000' => 'ptr', 'Potri.016G100200' => 'ptr', 'Pp3c10_20450' => 'ppa', 'Pp3c1_42400' => 'ppa', 'Pp3c3_24390' => 'ppa', 'Pp3c3_2860' => 'ppa', 'PRCOL_00003193' => 'pco', 'Prupe.2G144500' => 'ppe', 'Prupe.2G195700' => 'ppe', 'Prupe.2G209800' => 'ppe', 'Prupe.5G080000' => 'ppe', 'Prupe.6G257900' => 'ppe', 'Psat3g001160' => 'psa', 'Psat6g181880' => 'psa', 'Psat7g233720' => 'psa', 'PSO063G7587' => 'pso', 'PSO339G2145' => 'pso', 'PSO339G3369' => 'pso', 'PSO478G2747' => 'pso', 'PSO513G0140' => 'pso', 'PSO782G1614' => 'pso', 'PSO782G4889' => 'pso', 'PSO782G5485' => 'pso', 'PSO801G0241' => 'pso', 'QL07p048854' => 'qlo', 'QL08p046745' => 'qlo', 'QL08p052606' => 'qlo', 'QL08p053414' => 'qlo', 'QL08p054868' => 'qlo', 'RcHm_v2.0_Chr1g0350251' => 'rch', 'RcHm_v2.0_Chr1g0360851' => 'rch', 'RcHm_v2.0_Chr1g0362791' => 'rch', 'RcHm_v2.0_Chr3g0466281' => 'rch', 'RcHm_v2.0_Chr7g0201481' => 'rch', 'Rhsim01G0148600' => 'rsi', 'Rhsim05G0194400' => 'rsi', 'Rhsim07G0000700' => 'rsi', 'Rhsim07G0000800' => 'rsi', 'Rhsim07G0027900' => 'rsi', 'Rhsim09G0149500' => 'rsi', 'RhsimUnG0186900' => 'rsi', 'Sabra01G0089900' => 'sbr', 'Sabra02G0114700' => 'sbr', 'Sabra02G0116300' => 'sbr', 'Sabra03G0080100' => 'sbr', 'Sabra08G0024300' => 'sbr', 'Sabra10G0174300' => 'sbr', 'Sabra14G0048900' => 'sbr', 'Sabra14G0076500' => 'sbr', 'SalBow5G2513' => 'sbo', 'Sc01g0002300' => 'sci', 'Sc01g0004450' => 'sci', 'Sc06g0001680' => 'sci', 'Sc23g0003580' => 'sci', 'Sed0000913' => 'sed', 'Sed0001655' => 'sed', 'Sed0007745' => 'sed', 'Sed0010951' => 'sed', 'Sed0017599' => 'sed', 'Sed0021405' => 'sed', 'Sed0022810' => 'sed', 'SEGI_07099' => 'sgi', 'SEGI_11931' => 'sgi', 'SEGI_13187' => 'sgi', 'SEGI_29958' => 'sgi', 'SEGI_36351' => 'sgi', 'SGA_v2.0_scaffold126G33770' => 'sas', 'SGA_v2.0_scaffold153G37003' => 'sas', 'SGA_v2.0_scaffold2G01359' => 'sas', 'SGA_v2.0_scaffold5G03064' => 'sas', 'SGA_v2.0_scaffold95G28903' => 'sas', 'SHI12701' => 'shi', 'SHI26410' => 'shi', 'SHI38997' => 'shi', 'SHI53759' => 'shi', 'SHI53886' => 'shi', 'SHI54714' => 'shi', 'SMO011G0041' => 'smo', 'SMO146G0251' => 'smo', 'SMO160G0004' => 'smo', 'SMO174G0057' => 'smo', 'SMO244G0089' => 'smo', 'SMO296G0011' => 'smo', 'Solyc01g091280.3' => 'sly', 'Solyc05g047610.3' => 'sly', 'Solyc05g047640.3' => 'sly', 'Solyc05g055630.3' => 'sly', 'Solyc10g018160.2' => 'sly', 'Solyc10g084820.2' => 'sly', 'Solyc10g086565.2' => 'sly', 'Sopen01g037030' => 'spe', 'Sopen05g027920' => 'spe', 'Sopen05g034070' => 'spe', 'Sopen10g007260' => 'spe', 'Sopen10g034260' => 'spe', 'Sopen10g035950' => 'spe', 'Sp3g07710' => 'spa', 'Sp4g27420' => 'spa', 'Sp5g02450' => 'spa', 'Sp6g01280' => 'spa', 'Sp6g38480' => 'spa', 'Sp7g20780' => 'spa', 'TAR374G1413' => 'tar', 'TAR623G1777' => 'tar', 'TAR629G2370' => 'tar', 'TAR633G1759' => 'tar', 'TAR636G3387' => 'tar', 'THA.LOC104802447' => 'tha', 'THA.LOC104813916' => 'tha', 'THA.LOC104816423' => 'tha', 'THA.LOC104817246' => 'tha', 'THA.LOC104825895' => 'tha', 'Thecc.01G335200' => 'tca', 'Thecc.01G377400' => 'tca', 'Thecc.03G262200' => 'tca', 'Thecc.05G036800' => 'tca', 'Thecc.10G080500' => 'tca', 'Thecc.10G080800' => 'tca', 'Thhalv10001560m.g' => 'esa', 'Thhalv10006120m.g' => 'esa', 'Thhalv10014375m.g' => 'esa', 'Thhalv10021264m.g' => 'esa', 'Thhalv10028856m.g' => 'esa', 'TPR.G1914' => 'tpr', 'TPR.G4757' => 'tpr', 'TPR.G5595' => 'tpr', 'TWI14G0952' => 'twi', 'TWI14G1307' => 'twi', 'TWI38G2143' => 'twi', 'TWI59G0826' => 'twi', 'TWI77G0527' => 'twi', 'TWI81G0150' => 'twi', 'unitig_21.g21018' => 'ugi', 'unitig_26.g9725' => 'ugi', 'unitig_744.g24653' => 'ugi', 'unitig_749.g13778' => 'ugi', 'unitig_899.g15035' => 'ugi', 'vmacro04296' => 'vma', 'vmacro04852' => 'vma', 'vmacro13404' => 'vma', 'vmacro20169' => 'vma', 'vmacro21014' => 'vma', 'VMungo0331G0237' => 'vmu', 'VMungo0331G0706' => 'vmu', 'VMungo0331G1361' => 'vmu', 'VMungo0331G1489' => 'vmu', 'VMungo0540G1037' => 'vmu', 'VMungo0720G2487' => 'vmu', 'VMungo0720G2721' => 'vmu', 'Zm00001eb086860' => 'zma', 'Zm00001eb104760' => 'zma', 'Zm00001eb148220' => 'zma', 'Zm00001eb259030' => 'zma', 'Zm00001eb289590' => 'zma', 'Zm00001eb420150' => 'zma' ), 'gf_id' => 'HOM05D000968', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000968' ), 'data_identifier' => 'HOM05D000968', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000968', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p31690' => 'bna', 'A03p36040' => 'bna', 'A03p53730' => 'bna', 'A04p01410' => 'bna', 'A05p05420' => 'bna', 'A05p39630' => 'bna', 'A05p39640' => 'bna', 'A09p00970' => 'bna', 'A09p53060' => 'bna', 'A10p31890' => 'bna', 'Aa31LG10G15040' => 'aar', 'Aa31LG1G21090' => 'aar', 'Aa31LG1G26900' => 'aar', 'Aa31LG3G1820' => 'aar', 'Aa31LG5G1100' => 'aar', 'Aa31LG6G4740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2265' => 'aag', 'Actinidia07998' => 'ach', 'Actinidia11266' => 'ach', 'Actinidia12682' => 'ach', 'Actinidia26479' => 'ach', 'Actinidia31406' => 'ach', 'Actinidia32437' => 'ach', 'Actinidia38862' => 'ach', 'Ah.05g174230' => 'amhyb', 'Ah.05g179070' => 'amhyb', 'Ah.05g179090' => 'amhyb', 'Ah.12g059950' => 'amhyb', 'AL3G20480' => 'aly', 'AL4G44520' => 'aly', 'AL5G43110' => 'aly', 'AL6G13890' => 'aly', 'AL6G52620' => 'aly', 'AL7G30830' => 'aly', 'Aqoxy1G00899' => 'aox', 'Aqoxy5G04333' => 'aox', 'Aqoxy7G00641' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3IZ0NN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4EF6AW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W9P8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79GA3M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C43NQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFCU6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G95YVJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCHK29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LU1UG8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX91RN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGB4B1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8DA0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9H7JI' => 'arhy', 'AT3G09320' => 'ath', 'AT3G60800' => 'ath', 'AT4G00840' => 'ath', 'AT4G22750' => 'ath', 'AT5G04270' => 'ath', 'ATR0090G003' => 'atr', 'ATR0559G349' => 'atr', 'ATR0680G261' => 'atr', 'ATR0810G048' => 'atr', 'Atru.chr12.831' => 'acertr', 'Atru.chr5.303' => 'acertr', 'Atru.chr5.748' => 'acertr', 'Atru.chr8.1999' => 'acertr', 'Atru.chr9.1436' => 'acertr', 'AUR62004211' => 'cqu', 'AUR62004548' => 'cqu', 'AUR62013637' => 'cqu', 'AUR62022662' => 'cqu', 'AUR62025777' => 'cqu', 'AUR62042386' => 'cqu', 'BcaB01g02310' => 'bca', 'BcaB01g06062' => 'bca', 'BcaB02g08975' => 'bca', 'BcaB02g08980' => 'bca', 'BcaC01g04228' => 'bca', 'BcaC01g06830' => 'bca', 'BcaC02g10186' => 'bca', 'BcaC02g12214' => 'bca', 'BcaC04g24101' => 'bca', 'BcaC05g29520' => 'bca', 'BcaC05g29661' => 'bca', 'BcaC06g32130' => 'bca', 'BcaC06g32131' => 'bca', 'BcaC07g40601' => 'bca', 'BcaC07g42641' => 'bca', 'BcaNung01038' => 'bca', 'BcaNung01676' => 'bca', 'BcaNung02480' => 'bca', 'BcaNung07376' => 'bca', 'BolC3t16146H' => 'bol', 'BolC3t16637H' => 'bol', 'BolC4t22257H' => 'bol', 'BolC4t24728H' => 'bol', 'BolC5t34517H' => 'bol', 'BolC7t45703H' => 'bol', 'BolC8t51166H' => 'bol', 'BolC9t53038H' => 'bol', 'BolC9t60000H' => 'bol', 'BraA01t01345Z' => 'bra', 'BraA01t01346Z' => 'bra', 'BraA01t01348Z' => 'bra', 'BraA03t12347Z' => 'bra', 'BraA03t12775Z' => 'bra', 'BraA03t14439Z' => 'bra', 'BraA04t15860Z' => 'bra', 'BraA05t19511Z' => 'bra', 'BraA05t22746Z' => 'bra', 'BraA09t35767Z' => 'bra', 'BraA09t40732Z' => 'bra', 'BraA10t45233Z' => 'bra', 'C03p38720' => 'bna', 'C03p43680' => 'bna', 'C04p06350' => 'bna', 'C04p31800' => 'bna', 'C05p58680' => 'bna', 'C07p52110' => 'bna', 'C08p35760' => 'bna', 'C09p01050' => 'bna', 'C09p72600' => 'bna', 'CAN.G106.2' => 'can', 'CAN.G1482.1' => 'can', 'CAN.G324.12' => 'can', 'CAN.G388.20' => 'can', 'CAN.G412.7' => 'can', 'CAN.G694.32' => 'can', 'CAN.G92.12' => 'can', 'CANSAT11G2353' => 'cansat', 'CANSAT21G1398' => 'cansat', 'CANSAT56G2456' => 'cansat', 'CANSAT56G3031' => 'cansat', 'CANSAT56G4539' => 'cansat', 'CARHR083680' => 'chi', 'CARHR171190' => 'chi', 'CARHR209010' => 'chi', 'CARHR229680' => 'chi', 'CARHR249490' => 'chi', 'Carub.0003s0844' => 'cru', 'Carub.0005s2755' => 'cru', 'Carub.0006s0322' => 'cru', 'Carub.0006s3586' => 'cru', 'Carub.0007s1855' => 'cru', 'Ca_07808_v3' => 'car', 'Ca_09535_v3' => 'car', 'Ca_10548_v3' => 'car', 'Ca_19913_v3' => 'car', 'Ca_19916_v3' => 'car', 'Ca_19975_v3' => 'car', 'CBR_g22876' => 'cbr', 'CBR_g22879' => 'cbr', 'CBR_g38491' => 'cbr', 'CBR_g54185' => 'cbr', 'CBR_g54190' => 'cbr', 'Cc02_g11020' => 'ccan', 'Cc02_g23920' => 'ccan', 'Cc02_g39860' => 'ccan', 'Cc02_g39870' => 'ccan', 'Cc03_g06760' => 'ccan', 'Cc06_g02450' => 'ccan', 'Cc09_g09450' => 'ccan', 'CDE02G1959' => 'cde', 'CDE04G0600' => 'cde', 'CDE07G1996' => 'cde', 'CDE07G2078' => 'cde', 'CDE11G0611' => 'cde', 'Cfa001683' => 'cfa', 'Cfa001734' => 'cfa', 'Cfa001737' => 'cfa', 'Cfa003751' => 'cfa', 'Cfa012019' => 'cfa', 'Cfa017353' => 'cfa', 'Cfa017732' => 'cfa', 'Cfa022464' => 'cfa', 'Ciclev10012400m.g' => 'ccl', 'Ciclev10021242m.g' => 'ccl', 'Ciclev10021302m.g' => 'ccl', 'Ciclev10021463m.g' => 'ccl', 'Ciclev10032359m.g' => 'ccl', 'CiPaw.01G081000' => 'cil', 'CiPaw.01G262500' => 'cil', 'CiPaw.01G269800' => 'cil', 'CiPaw.02G168400' => 'cil', 'CiPaw.05G119500' => 'cil', 'CiPaw.11G147300' => 'cil', 'ClCG01G003630' => 'cla', 'ClCG05G000510' => 'cla', 'ClCG05G002300' => 'cla', 'ClCG08G007650' => 'cla', 'ClCG10G021250' => 'cla', 'COL.COLO4_06218' => 'col', 'COL.COLO4_12538' => 'col', 'COL.COLO4_14775' => 'col', 'COL.COLO4_23875' => 'col', 'Cpa.g.sc141.16' => 'cpa', 'Cpa.g.sc169.16' => 'cpa', 'Cpa.g.sc244.4' => 'cpa', 'Cpa.g.sc244.5' => 'cpa', 'Cpa.g.sc29.87' => 'cpa', 'Cpa.g.sc53.115' => 'cpa', 'Cre03.g207502' => 'cre', 'Cre06.g277000' => 'cre', 'Cre09.g394050' => 'cre', 'CsaV3_3G007680' => 'csa', 'CsaV3_3G009710' => 'csa', 'CsaV3_3G034790' => 'csa', 'CsaV3_5G003750' => 'csa', 'CsaV3_6G036620' => 'csa', 'CSS0002288' => 'camsi', 'CSS0011250' => 'camsi', 'CSS0021619' => 'camsi', 'CSS0046701' => 'camsi', 'DCAR_006420' => 'dca', 'DCAR_006865' => 'dca', 'DCAR_008558' => 'dca', 'DCAR_028754' => 'dca', 'DCAR_028755' => 'dca', 'Dinv31218' => 'din', 'Dinv32371' => 'din', 'Dinv34250' => 'din', 'Dinv37156' => 'din', 'Dinv43704' => 'din', 'Duzib093G1811' => 'dzi', 'Duzib106G1622' => 'dzi', 'Duzib114G0504' => 'dzi', 'Duzib128G0338' => 'dzi', 'Duzib128G1577' => 'dzi', 'Duzib133G0104' => 'dzi', 'Duzib133G1080' => 'dzi', 'Duzib138G0324' => 'dzi', 'Duzib138G0394' => 'dzi', 'Duzib205G0122' => 'dzi', 'Duzib268G1020' => 'dzi', 'Duzib268G1359' => 'dzi', 'ECA232G3929' => 'eca', 'ECA236G2210' => 'eca', 'ECA236G2287' => 'eca', 'ECA240G4568' => 'eca', 'ECA247G0894' => 'eca', 'EL10Ac1g00200' => 'bvu', 'EL10Ac1g00886' => 'bvu', 'EL10As1g23091' => 'bvu', 'EL10As1g23092' => 'bvu', 'Eucgr.A01284' => 'egr', 'Eucgr.A01285' => 'egr', 'Eucgr.D02456' => 'egr', 'Eucgr.E00018' => 'egr', 'Eucgr.E01439' => 'egr', 'Eucgr.G02859' => 'egr', 'FAN01G0168' => 'fan', 'FAN01G0453' => 'fan', 'FAN01G2761' => 'fan', 'FAN02G1239' => 'fan', 'FAN03G0645' => 'fan', 'FAN03G2707' => 'fan', 'FAN03G2978' => 'fan', 'FAN04G0227' => 'fan', 'FAN06G0091' => 'fan', 'FAN06G1418' => 'fan', 'FAN06G1512' => 'fan', 'FAN06G1986' => 'fan', 'FAN06G2905' => 'fan', 'FAN06G4325' => 'fan', 'FAN08G0033' => 'fan', 'FAN09G0642' => 'fan', 'FAN10G1763' => 'fan', 'FAN10G2026' => 'fan', 'FAN10G2513' => 'fan', 'FAN10G3402' => 'fan', 'FAN10G3564' => 'fan', 'FAN10G3987' => 'fan', 'FAN13G1490' => 'fan', 'FAN14G5857' => 'fan', 'FAN18G1188' => 'fan', 'FvH4_5g00750' => 'fve', 'FvH4_6g13410' => 'fve', 'FvH4_7g11740' => 'fve', 'FvH4_7g17410' => 'fve', 'FvH4_7g18860' => 'fve', 'Glyma.01G099100' => 'gma', 'Glyma.01G142300' => 'gma', 'Glyma.03G025500' => 'gma', 'Glyma.03G069700' => 'gma', 'Glyma.03G260000' => 'gma', 'Glyma.09G269800' => 'gma', 'Glyma.10G208700' => 'gma', 'Glyma.18G220400' => 'gma', 'Glyma.20G182000' => 'gma', 'Gohir.A01G221726' => 'ghi', 'Gohir.A07G134600' => 'ghi', 'Gohir.A07G146000' => 'ghi', 'Gohir.A08G173900' => 'ghi', 'Gohir.A09G194900' => 'ghi', 'Gohir.A10G204100' => 'ghi', 'Gohir.A11G080600' => 'ghi', 'Gohir.A11G327500' => 'ghi', 'Gohir.A12G101800' => 'ghi', 'Gohir.D01G211200' => 'ghi', 'Gohir.D07G139200' => 'ghi', 'Gohir.D07G152100' => 'ghi', 'Gohir.D08G192600' => 'ghi', 'Gohir.D09G189200' => 'ghi', 'Gohir.D10G212000' => 'ghi', 'Gohir.D11G085200' => 'ghi', 'Gohir.D11G346400' => 'ghi', 'Gohir.D12G104800' => 'ghi', 'Gorai.001G151300' => 'gra', 'Gorai.001G174100' => 'gra', 'Gorai.002G257000' => 'gra', 'Gorai.004G202600' => 'gra', 'Gorai.007G090900' => 'gra', 'Gorai.007G376700' => 'gra', 'Gorai.008G114100' => 'gra', 'Gorai.011G237900' => 'gra', 'GSVIVG01005450001' => 'vvi', 'GSVIVG01016232001' => 'vvi', 'GSVIVG01026157001' => 'vvi', 'GSVIVG01027419001' => 'vvi', 'GSVIVG01027631001' => 'vvi', 'GSVIVG01034143001' => 'vvi', 'HanXRQChr03g0093921' => 'han', 'HanXRQChr04g0120001' => 'han', 'HanXRQChr04g0122561' => 'han', 'HanXRQChr09g0246851' => 'han', 'HanXRQChr10g0293311' => 'han', 'HanXRQChr13g0425231' => 'han', 'HanXRQChr16g0532571' => 'han', 'Haze_09050' => 'cav', 'Haze_15715' => 'cav', 'Haze_15716' => 'cav', 'Haze_16803' => 'cav', 'Haze_16850' => 'cav', 'Hma1.2p1_0301F.1_g118655' => 'hma', 'Hma1.2p1_0309F.1_g120590' => 'hma', 'Hma1.2p1_0936F.1_g238900' => 'hma', 'Hma1.2p1_3552F.1_g336740' => 'hma', 'HPP92_003520' => 'vpl', 'HPP92_006628' => 'vpl', 'HPP92_006645' => 'vpl', 'HPP92_014669' => 'vpl', 'HPP92_015077' => 'vpl', 'Hund16742' => 'sun', 'Hund17022' => 'sun', 'Lalb_Chr02g0152131' => 'lal', 'Lalb_Chr05g0225371' => 'lal', 'Lalb_Chr07g0189841' => 'lal', 'Lalb_Chr07g0192961' => 'lal', 'Lalb_Chr12g0208221' => 'lal', 'Lalb_Chr13g0291211' => 'lal', 'Lalb_Chr13g0291781' => 'lal', 'Lalb_Chr18g0044651' => 'lal', 'Lalb_Chr21g0313731' => 'lal', 'Lj1g0022533' => 'lja', 'Lj2A18T50' => 'lonja', 'Lj2A92G93' => 'lonja', 'Lj3A965T73' => 'lonja', 'Lj3g0000673' => 'lja', 'Lj3g0002666' => 'lja', 'Lj4g0016985' => 'lja', 'Lj5g0003625' => 'lja', 'Lj7A529G36' => 'lonja', 'Lj9A569T49' => 'lonja', 'Lj9A604T63' => 'lonja', 'Lsat_1_v5_gn_3_132060' => 'lsa', 'Lsat_1_v5_gn_4_68941' => 'lsa', 'Lsat_1_v5_gn_5_95580' => 'lsa', 'Lsat_1_v5_gn_7_161' => 'lsa', 'Lsat_1_v5_gn_7_7041' => 'lsa', 'Lsat_1_v5_gn_9_33481' => 'lsa', 'Lsat_1_v5_gn_9_68260' => 'lsa', 'Manes.01G073100' => 'mes', 'Manes.01G266300' => 'mes', 'Manes.02G033300' => 'mes', 'Manes.05G017900' => 'mes', 'Manes.05G046100' => 'mes', 'Manes.08G080900' => 'mes', 'Manes.10G049400' => 'mes', 'Mapoly0009s0186' => 'mpo', 'Mapoly0036s0118' => 'mpo', 'Mapoly0101s0046' => 'mpo', 'MBI04_g30218_MAGBIO' => 'mbi', 'MBI04_g35564_MAGBIO' => 'mbi', 'MBI12_g34011_MAGBIO' => 'mbi', 'MBI14_g04655_MAGBIO' => 'mbi', 'MCO07G653' => 'mco', 'MCO10G173' => 'mco', 'MD01G1087100' => 'mdo', 'MD01G1104200' => 'mdo', 'MD02G1205100' => 'mdo', 'MD04G1079200' => 'mdo', 'MD04G1131400' => 'mdo', 'MD07G1121600' => 'mdo', 'MD07G1157300' => 'mdo', 'MD07G1171000' => 'mdo', 'MD12G1144500' => 'mdo', 'Medtr1g094610' => 'mtr', 'Medtr4g021795' => 'mtr', 'Medtr4g023760' => 'mtr', 'Medtr7g118050' => 'mtr', 'MELO3C005582.2' => 'cme', 'MELO3C005989.2' => 'cme', 'MELO3C006192.2' => 'cme', 'MELO3C009248.2' => 'cme', 'MELO3C019817.2' => 'cme', 'Migut.B01625' => 'egut', 'Migut.B01915' => 'egut', 'Migut.F01721' => 'egut', 'Migut.J00314' => 'egut', 'MSTRG.20742' => 'ama', 'MSTRG.8134' => 'ama', 'Nitab4.5_0000096g0010' => 'nta', 'Nitab4.5_0000202g0030' => 'nta', 'Nitab4.5_0000216g0370' => 'nta', 'Nitab4.5_0000457g0230' => 'nta', 'Nitab4.5_0001702g0170' => 'nta', 'Nitab4.5_0003607g0010' => 'nta', 'Nitab4.5_0004917g0020' => 'nta', 'Nitab4.5_0007059g0010' => 'nta', 'Nitab4.5_0007184g0010' => 'nta', 'Nitab4.5_0007346g0020' => 'nta', 'Nn1g00410' => 'nnu', 'Nn1g01252' => 'nnu', 'Nn2g11168' => 'nnu', 'Nn2g13403' => 'nnu', 'Nn2g13760' => 'nnu', 'Nn4g26380' => 'nnu', 'Oeu000806.2' => 'oeu', 'Oeu005788.1' => 'oeu', 'Oeu006900.3' => 'oeu', 'Oeu007797.1' => 'oeu', 'Oeu011932.1' => 'oeu', 'Oeu022739.1' => 'oeu', 'Oeu037918.1' => 'oeu', 'Oeu055490.2' => 'oeu', 'Os01g0844400' => 'osa', 'Os02g0819100' => 'osa', 'Os03g0804300' => 'osa', 'Os05g0458000' => 'osa', 'Os07g0467800' => 'osa', 'Os12g0602200' => 'osa', 'Peaxi162Scf00013g03444' => 'pax', 'Peaxi162Scf00094g01120' => 'pax', 'Peaxi162Scf00191g01211' => 'pax', 'Peaxi162Scf00238g01110' => 'pax', 'Peaxi162Scf00330g00719' => 'pax', 'Peaxi162Scf00627g00018' => 'pax', 'PGR031G2686' => 'pgr', 'PGR042G0809' => 'pgr', 'PGR142G0193' => 'pgr', 'PGSC0003DMG400011066' => 'stu', 'PGSC0003DMG400012041' => 'stu', 'PGSC0003DMG400013678' => 'stu', 'PGSC0003DMG400023477' => 'stu', 'PGSC0003DMG400025956' => 'stu', 'PGSC0003DMG401019151' => 'stu', 'Phvul.006G116400' => 'pvu', 'Phvul.007G097300' => 'pvu', 'Phvul.010G015000' => 'pvu', 'Phvul.010G083900' => 'pvu', 'Potri.001G117100' => 'ptr', 'Potri.002G147300' => 'ptr', 'Potri.003G115600' => 'ptr', 'Potri.006G087400' => 'ptr', 'Potri.010G226100' => 'ptr', 'Potri.014G069200' => 'ptr', 'Potri.014G104000' => 'ptr', 'Potri.016G100200' => 'ptr', 'Pp3c10_20450' => 'ppa', 'Pp3c1_42400' => 'ppa', 'Pp3c3_24390' => 'ppa', 'Pp3c3_2860' => 'ppa', 'PRCOL_00003193' => 'pco', 'Prupe.2G144500' => 'ppe', 'Prupe.2G195700' => 'ppe', 'Prupe.2G209800' => 'ppe', 'Prupe.5G080000' => 'ppe', 'Prupe.6G257900' => 'ppe', 'Psat3g001160' => 'psa', 'Psat6g181880' => 'psa', 'Psat7g233720' => 'psa', 'PSO063G7587' => 'pso', 'PSO339G2145' => 'pso', 'PSO339G3369' => 'pso', 'PSO478G2747' => 'pso', 'PSO513G0140' => 'pso', 'PSO782G1614' => 'pso', 'PSO782G4889' => 'pso', 'PSO782G5485' => 'pso', 'PSO801G0241' => 'pso', 'QL07p048854' => 'qlo', 'QL08p046745' => 'qlo', 'QL08p052606' => 'qlo', 'QL08p053414' => 'qlo', 'QL08p054868' => 'qlo', 'RcHm_v2.0_Chr1g0350251' => 'rch', 'RcHm_v2.0_Chr1g0360851' => 'rch', 'RcHm_v2.0_Chr1g0362791' => 'rch', 'RcHm_v2.0_Chr3g0466281' => 'rch', 'RcHm_v2.0_Chr7g0201481' => 'rch', 'Rhsim01G0148600' => 'rsi', 'Rhsim05G0194400' => 'rsi', 'Rhsim07G0000700' => 'rsi', 'Rhsim07G0000800' => 'rsi', 'Rhsim07G0027900' => 'rsi', 'Rhsim09G0149500' => 'rsi', 'RhsimUnG0186900' => 'rsi', 'Sabra01G0089900' => 'sbr', 'Sabra02G0114700' => 'sbr', 'Sabra02G0116300' => 'sbr', 'Sabra03G0080100' => 'sbr', 'Sabra08G0024300' => 'sbr', 'Sabra10G0174300' => 'sbr', 'Sabra14G0048900' => 'sbr', 'Sabra14G0076500' => 'sbr', 'SalBow5G2513' => 'sbo', 'Sc01g0002300' => 'sci', 'Sc01g0004450' => 'sci', 'Sc06g0001680' => 'sci', 'Sc23g0003580' => 'sci', 'Sed0000913' => 'sed', 'Sed0001655' => 'sed', 'Sed0007745' => 'sed', 'Sed0010951' => 'sed', 'Sed0017599' => 'sed', 'Sed0021405' => 'sed', 'Sed0022810' => 'sed', 'SEGI_07099' => 'sgi', 'SEGI_11931' => 'sgi', 'SEGI_13187' => 'sgi', 'SEGI_29958' => 'sgi', 'SEGI_36351' => 'sgi', 'SGA_v2.0_scaffold126G33770' => 'sas', 'SGA_v2.0_scaffold153G37003' => 'sas', 'SGA_v2.0_scaffold2G01359' => 'sas', 'SGA_v2.0_scaffold5G03064' => 'sas', 'SGA_v2.0_scaffold95G28903' => 'sas', 'SHI12701' => 'shi', 'SHI26410' => 'shi', 'SHI38997' => 'shi', 'SHI53759' => 'shi', 'SHI53886' => 'shi', 'SHI54714' => 'shi', 'SMO011G0041' => 'smo', 'SMO146G0251' => 'smo', 'SMO160G0004' => 'smo', 'SMO174G0057' => 'smo', 'SMO244G0089' => 'smo', 'SMO296G0011' => 'smo', 'Solyc01g091280.3' => 'sly', 'Solyc05g047610.3' => 'sly', 'Solyc05g047640.3' => 'sly', 'Solyc05g055630.3' => 'sly', 'Solyc10g018160.2' => 'sly', 'Solyc10g084820.2' => 'sly', 'Solyc10g086565.2' => 'sly', 'Sopen01g037030' => 'spe', 'Sopen05g027920' => 'spe', 'Sopen05g034070' => 'spe', 'Sopen10g007260' => 'spe', 'Sopen10g034260' => 'spe', 'Sopen10g035950' => 'spe', 'Sp3g07710' => 'spa', 'Sp4g27420' => 'spa', 'Sp5g02450' => 'spa', 'Sp6g01280' => 'spa', 'Sp6g38480' => 'spa', 'Sp7g20780' => 'spa', 'TAR374G1413' => 'tar', 'TAR623G1777' => 'tar', 'TAR629G2370' => 'tar', 'TAR633G1759' => 'tar', 'TAR636G3387' => 'tar', 'THA.LOC104802447' => 'tha', 'THA.LOC104813916' => 'tha', 'THA.LOC104816423' => 'tha', 'THA.LOC104817246' => 'tha', 'THA.LOC104825895' => 'tha', 'Thecc.01G335200' => 'tca', 'Thecc.01G377400' => 'tca', 'Thecc.03G262200' => 'tca', 'Thecc.05G036800' => 'tca', 'Thecc.10G080500' => 'tca', 'Thecc.10G080800' => 'tca', 'Thhalv10001560m.g' => 'esa', 'Thhalv10006120m.g' => 'esa', 'Thhalv10014375m.g' => 'esa', 'Thhalv10021264m.g' => 'esa', 'Thhalv10028856m.g' => 'esa', 'TPR.G1914' => 'tpr', 'TPR.G4757' => 'tpr', 'TPR.G5595' => 'tpr', 'TWI14G0952' => 'twi', 'TWI14G1307' => 'twi', 'TWI38G2143' => 'twi', 'TWI59G0826' => 'twi', 'TWI77G0527' => 'twi', 'TWI81G0150' => 'twi', 'unitig_21.g21018' => 'ugi', 'unitig_26.g9725' => 'ugi', 'unitig_744.g24653' => 'ugi', 'unitig_749.g13778' => 'ugi', 'unitig_899.g15035' => 'ugi', 'vmacro04296' => 'vma', 'vmacro04852' => 'vma', 'vmacro13404' => 'vma', 'vmacro20169' => 'vma', 'vmacro21014' => 'vma', 'VMungo0331G0237' => 'vmu', 'VMungo0331G0706' => 'vmu', 'VMungo0331G1361' => 'vmu', 'VMungo0331G1489' => 'vmu', 'VMungo0540G1037' => 'vmu', 'VMungo0720G2487' => 'vmu', 'VMungo0720G2721' => 'vmu', 'Zm00001eb086860' => 'zma', 'Zm00001eb104760' => 'zma', 'Zm00001eb148220' => 'zma', 'Zm00001eb259030' => 'zma', 'Zm00001eb289590' => 'zma', 'Zm00001eb420150' => 'zma' ) $gf_id = 'HOM05D000968' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000968' ) $data_identifier = 'HOM05D000968' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 19, 'bol' => (int) 9, 'bra' => (int) 12, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 5, 'ccan' => (int) 7, 'cde' => (int) 5, 'cfa' => (int) 8, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 4, 'dca' => (int) 5, 'din' => (int) 5, 'dzi' => (int) 12, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 25, 'fve' => (int) 5, 'gma' => (int) 9, 'ghi' => (int) 18, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 7, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 5, 'sun' => (int) 2, 'lal' => (int) 9, 'lja' => (int) 5, 'lonja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 9, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 2, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 3, 'stu' => (int) 6, 'pvu' => (int) 4, 'ptr' => (int) 8, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 3, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 1, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 5, 'sas' => (int) 5, 'shi' => (int) 6, 'smo' => (int) 6, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 3, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420150' $species_info = array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ) $local_species = 'egut' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000968', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p31690' => 'bna', 'A03p36040' => 'bna', 'A03p53730' => 'bna', 'A04p01410' => 'bna', 'A05p05420' => 'bna', 'A05p39630' => 'bna', 'A05p39640' => 'bna', 'A09p00970' => 'bna', 'A09p53060' => 'bna', 'A10p31890' => 'bna', 'Aa31LG10G15040' => 'aar', 'Aa31LG1G21090' => 'aar', 'Aa31LG1G26900' => 'aar', 'Aa31LG3G1820' => 'aar', 'Aa31LG5G1100' => 'aar', 'Aa31LG6G4740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2265' => 'aag', 'Actinidia07998' => 'ach', 'Actinidia11266' => 'ach', 'Actinidia12682' => 'ach', 'Actinidia26479' => 'ach', 'Actinidia31406' => 'ach', 'Actinidia32437' => 'ach', 'Actinidia38862' => 'ach', 'Ah.05g174230' => 'amhyb', 'Ah.05g179070' => 'amhyb', 'Ah.05g179090' => 'amhyb', 'Ah.12g059950' => 'amhyb', 'AL3G20480' => 'aly', 'AL4G44520' => 'aly', 'AL5G43110' => 'aly', 'AL6G13890' => 'aly', 'AL6G52620' => 'aly', 'AL7G30830' => 'aly', 'Aqoxy1G00899' => 'aox', 'Aqoxy5G04333' => 'aox', 'Aqoxy7G00641' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3IZ0NN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4EF6AW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W9P8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79GA3M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C43NQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFCU6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G95YVJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCHK29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LU1UG8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX91RN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGB4B1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8DA0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9H7JI' => 'arhy', 'AT3G09320' => 'ath', 'AT3G60800' => 'ath', 'AT4G00840' => 'ath', 'AT4G22750' => 'ath', 'AT5G04270' => 'ath', 'ATR0090G003' => 'atr', 'ATR0559G349' => 'atr', 'ATR0680G261' => 'atr', 'ATR0810G048' => 'atr', 'Atru.chr12.831' => 'acertr', 'Atru.chr5.303' => 'acertr', 'Atru.chr5.748' => 'acertr', 'Atru.chr8.1999' => 'acertr', 'Atru.chr9.1436' => 'acertr', 'AUR62004211' => 'cqu', 'AUR62004548' => 'cqu', 'AUR62013637' => 'cqu', 'AUR62022662' => 'cqu', 'AUR62025777' => 'cqu', 'AUR62042386' => 'cqu', 'BcaB01g02310' => 'bca', 'BcaB01g06062' => 'bca', 'BcaB02g08975' => 'bca', 'BcaB02g08980' => 'bca', 'BcaC01g04228' => 'bca', 'BcaC01g06830' => 'bca', 'BcaC02g10186' => 'bca', 'BcaC02g12214' => 'bca', 'BcaC04g24101' => 'bca', 'BcaC05g29520' => 'bca', 'BcaC05g29661' => 'bca', 'BcaC06g32130' => 'bca', 'BcaC06g32131' => 'bca', 'BcaC07g40601' => 'bca', 'BcaC07g42641' => 'bca', 'BcaNung01038' => 'bca', 'BcaNung01676' => 'bca', 'BcaNung02480' => 'bca', 'BcaNung07376' => 'bca', 'BolC3t16146H' => 'bol', 'BolC3t16637H' => 'bol', 'BolC4t22257H' => 'bol', 'BolC4t24728H' => 'bol', 'BolC5t34517H' => 'bol', 'BolC7t45703H' => 'bol', 'BolC8t51166H' => 'bol', 'BolC9t53038H' => 'bol', 'BolC9t60000H' => 'bol', 'BraA01t01345Z' => 'bra', 'BraA01t01346Z' => 'bra', 'BraA01t01348Z' => 'bra', 'BraA03t12347Z' => 'bra', 'BraA03t12775Z' => 'bra', 'BraA03t14439Z' => 'bra', 'BraA04t15860Z' => 'bra', 'BraA05t19511Z' => 'bra', 'BraA05t22746Z' => 'bra', 'BraA09t35767Z' => 'bra', 'BraA09t40732Z' => 'bra', 'BraA10t45233Z' => 'bra', 'C03p38720' => 'bna', 'C03p43680' => 'bna', 'C04p06350' => 'bna', 'C04p31800' => 'bna', 'C05p58680' => 'bna', 'C07p52110' => 'bna', 'C08p35760' => 'bna', 'C09p01050' => 'bna', 'C09p72600' => 'bna', 'CAN.G106.2' => 'can', 'CAN.G1482.1' => 'can', 'CAN.G324.12' => 'can', 'CAN.G388.20' => 'can', 'CAN.G412.7' => 'can', 'CAN.G694.32' => 'can', 'CAN.G92.12' => 'can', 'CANSAT11G2353' => 'cansat', 'CANSAT21G1398' => 'cansat', 'CANSAT56G2456' => 'cansat', 'CANSAT56G3031' => 'cansat', 'CANSAT56G4539' => 'cansat', 'CARHR083680' => 'chi', 'CARHR171190' => 'chi', 'CARHR209010' => 'chi', 'CARHR229680' => 'chi', 'CARHR249490' => 'chi', 'Carub.0003s0844' => 'cru', 'Carub.0005s2755' => 'cru', 'Carub.0006s0322' => 'cru', 'Carub.0006s3586' => 'cru', 'Carub.0007s1855' => 'cru', 'Ca_07808_v3' => 'car', 'Ca_09535_v3' => 'car', 'Ca_10548_v3' => 'car', 'Ca_19913_v3' => 'car', 'Ca_19916_v3' => 'car', 'Ca_19975_v3' => 'car', 'CBR_g22876' => 'cbr', 'CBR_g22879' => 'cbr', 'CBR_g38491' => 'cbr', 'CBR_g54185' => 'cbr', 'CBR_g54190' => 'cbr', 'Cc02_g11020' => 'ccan', 'Cc02_g23920' => 'ccan', 'Cc02_g39860' => 'ccan', 'Cc02_g39870' => 'ccan', 'Cc03_g06760' => 'ccan', 'Cc06_g02450' => 'ccan', 'Cc09_g09450' => 'ccan', 'CDE02G1959' => 'cde', 'CDE04G0600' => 'cde', 'CDE07G1996' => 'cde', 'CDE07G2078' => 'cde', 'CDE11G0611' => 'cde', 'Cfa001683' => 'cfa', 'Cfa001734' => 'cfa', 'Cfa001737' => 'cfa', 'Cfa003751' => 'cfa', 'Cfa012019' => 'cfa', 'Cfa017353' => 'cfa', 'Cfa017732' => 'cfa', 'Cfa022464' => 'cfa', 'Ciclev10012400m.g' => 'ccl', 'Ciclev10021242m.g' => 'ccl', 'Ciclev10021302m.g' => 'ccl', 'Ciclev10021463m.g' => 'ccl', 'Ciclev10032359m.g' => 'ccl', 'CiPaw.01G081000' => 'cil', 'CiPaw.01G262500' => 'cil', 'CiPaw.01G269800' => 'cil', 'CiPaw.02G168400' => 'cil', 'CiPaw.05G119500' => 'cil', 'CiPaw.11G147300' => 'cil', 'ClCG01G003630' => 'cla', 'ClCG05G000510' => 'cla', 'ClCG05G002300' => 'cla', 'ClCG08G007650' => 'cla', 'ClCG10G021250' => 'cla', 'COL.COLO4_06218' => 'col', 'COL.COLO4_12538' => 'col', 'COL.COLO4_14775' => 'col', 'COL.COLO4_23875' => 'col', 'Cpa.g.sc141.16' => 'cpa', 'Cpa.g.sc169.16' => 'cpa', 'Cpa.g.sc244.4' => 'cpa', 'Cpa.g.sc244.5' => 'cpa', 'Cpa.g.sc29.87' => 'cpa', 'Cpa.g.sc53.115' => 'cpa', 'Cre03.g207502' => 'cre', 'Cre06.g277000' => 'cre', 'Cre09.g394050' => 'cre', 'CsaV3_3G007680' => 'csa', 'CsaV3_3G009710' => 'csa', 'CsaV3_3G034790' => 'csa', 'CsaV3_5G003750' => 'csa', 'CsaV3_6G036620' => 'csa', 'CSS0002288' => 'camsi', 'CSS0011250' => 'camsi', 'CSS0021619' => 'camsi', 'CSS0046701' => 'camsi', 'DCAR_006420' => 'dca', 'DCAR_006865' => 'dca', 'DCAR_008558' => 'dca', 'DCAR_028754' => 'dca', 'DCAR_028755' => 'dca', 'Dinv31218' => 'din', 'Dinv32371' => 'din', 'Dinv34250' => 'din', 'Dinv37156' => 'din', 'Dinv43704' => 'din', 'Duzib093G1811' => 'dzi', 'Duzib106G1622' => 'dzi', 'Duzib114G0504' => 'dzi', 'Duzib128G0338' => 'dzi', 'Duzib128G1577' => 'dzi', 'Duzib133G0104' => 'dzi', 'Duzib133G1080' => 'dzi', 'Duzib138G0324' => 'dzi', 'Duzib138G0394' => 'dzi', 'Duzib205G0122' => 'dzi', 'Duzib268G1020' => 'dzi', 'Duzib268G1359' => 'dzi', 'ECA232G3929' => 'eca', 'ECA236G2210' => 'eca', 'ECA236G2287' => 'eca', 'ECA240G4568' => 'eca', 'ECA247G0894' => 'eca', 'EL10Ac1g00200' => 'bvu', 'EL10Ac1g00886' => 'bvu', 'EL10As1g23091' => 'bvu', 'EL10As1g23092' => 'bvu', 'Eucgr.A01284' => 'egr', 'Eucgr.A01285' => 'egr', 'Eucgr.D02456' => 'egr', 'Eucgr.E00018' => 'egr', 'Eucgr.E01439' => 'egr', 'Eucgr.G02859' => 'egr', 'FAN01G0168' => 'fan', 'FAN01G0453' => 'fan', 'FAN01G2761' => 'fan', 'FAN02G1239' => 'fan', 'FAN03G0645' => 'fan', 'FAN03G2707' => 'fan', 'FAN03G2978' => 'fan', 'FAN04G0227' => 'fan', 'FAN06G0091' => 'fan', 'FAN06G1418' => 'fan', 'FAN06G1512' => 'fan', 'FAN06G1986' => 'fan', 'FAN06G2905' => 'fan', 'FAN06G4325' => 'fan', 'FAN08G0033' => 'fan', 'FAN09G0642' => 'fan', 'FAN10G1763' => 'fan', 'FAN10G2026' => 'fan', 'FAN10G2513' => 'fan', 'FAN10G3402' => 'fan', 'FAN10G3564' => 'fan', 'FAN10G3987' => 'fan', 'FAN13G1490' => 'fan', 'FAN14G5857' => 'fan', 'FAN18G1188' => 'fan', 'FvH4_5g00750' => 'fve', 'FvH4_6g13410' => 'fve', 'FvH4_7g11740' => 'fve', 'FvH4_7g17410' => 'fve', 'FvH4_7g18860' => 'fve', 'Glyma.01G099100' => 'gma', 'Glyma.01G142300' => 'gma', 'Glyma.03G025500' => 'gma', 'Glyma.03G069700' => 'gma', 'Glyma.03G260000' => 'gma', 'Glyma.09G269800' => 'gma', 'Glyma.10G208700' => 'gma', 'Glyma.18G220400' => 'gma', 'Glyma.20G182000' => 'gma', 'Gohir.A01G221726' => 'ghi', 'Gohir.A07G134600' => 'ghi', 'Gohir.A07G146000' => 'ghi', 'Gohir.A08G173900' => 'ghi', 'Gohir.A09G194900' => 'ghi', 'Gohir.A10G204100' => 'ghi', 'Gohir.A11G080600' => 'ghi', 'Gohir.A11G327500' => 'ghi', 'Gohir.A12G101800' => 'ghi', 'Gohir.D01G211200' => 'ghi', 'Gohir.D07G139200' => 'ghi', 'Gohir.D07G152100' => 'ghi', 'Gohir.D08G192600' => 'ghi', 'Gohir.D09G189200' => 'ghi', 'Gohir.D10G212000' => 'ghi', 'Gohir.D11G085200' => 'ghi', 'Gohir.D11G346400' => 'ghi', 'Gohir.D12G104800' => 'ghi', 'Gorai.001G151300' => 'gra', 'Gorai.001G174100' => 'gra', 'Gorai.002G257000' => 'gra', 'Gorai.004G202600' => 'gra', 'Gorai.007G090900' => 'gra', 'Gorai.007G376700' => 'gra', 'Gorai.008G114100' => 'gra', 'Gorai.011G237900' => 'gra', 'GSVIVG01005450001' => 'vvi', 'GSVIVG01016232001' => 'vvi', 'GSVIVG01026157001' => 'vvi', 'GSVIVG01027419001' => 'vvi', 'GSVIVG01027631001' => 'vvi', 'GSVIVG01034143001' => 'vvi', 'HanXRQChr03g0093921' => 'han', 'HanXRQChr04g0120001' => 'han', 'HanXRQChr04g0122561' => 'han', 'HanXRQChr09g0246851' => 'han', 'HanXRQChr10g0293311' => 'han', 'HanXRQChr13g0425231' => 'han', 'HanXRQChr16g0532571' => 'han', 'Haze_09050' => 'cav', 'Haze_15715' => 'cav', 'Haze_15716' => 'cav', 'Haze_16803' => 'cav', 'Haze_16850' => 'cav', 'Hma1.2p1_0301F.1_g118655' => 'hma', 'Hma1.2p1_0309F.1_g120590' => 'hma', 'Hma1.2p1_0936F.1_g238900' => 'hma', 'Hma1.2p1_3552F.1_g336740' => 'hma', 'HPP92_003520' => 'vpl', 'HPP92_006628' => 'vpl', 'HPP92_006645' => 'vpl', 'HPP92_014669' => 'vpl', 'HPP92_015077' => 'vpl', 'Hund16742' => 'sun', 'Hund17022' => 'sun', 'Lalb_Chr02g0152131' => 'lal', 'Lalb_Chr05g0225371' => 'lal', 'Lalb_Chr07g0189841' => 'lal', 'Lalb_Chr07g0192961' => 'lal', 'Lalb_Chr12g0208221' => 'lal', 'Lalb_Chr13g0291211' => 'lal', 'Lalb_Chr13g0291781' => 'lal', 'Lalb_Chr18g0044651' => 'lal', 'Lalb_Chr21g0313731' => 'lal', 'Lj1g0022533' => 'lja', 'Lj2A18T50' => 'lonja', 'Lj2A92G93' => 'lonja', 'Lj3A965T73' => 'lonja', 'Lj3g0000673' => 'lja', 'Lj3g0002666' => 'lja', 'Lj4g0016985' => 'lja', 'Lj5g0003625' => 'lja', 'Lj7A529G36' => 'lonja', 'Lj9A569T49' => 'lonja', 'Lj9A604T63' => 'lonja', 'Lsat_1_v5_gn_3_132060' => 'lsa', 'Lsat_1_v5_gn_4_68941' => 'lsa', 'Lsat_1_v5_gn_5_95580' => 'lsa', 'Lsat_1_v5_gn_7_161' => 'lsa', 'Lsat_1_v5_gn_7_7041' => 'lsa', 'Lsat_1_v5_gn_9_33481' => 'lsa', 'Lsat_1_v5_gn_9_68260' => 'lsa', 'Manes.01G073100' => 'mes', 'Manes.01G266300' => 'mes', 'Manes.02G033300' => 'mes', 'Manes.05G017900' => 'mes', 'Manes.05G046100' => 'mes', 'Manes.08G080900' => 'mes', 'Manes.10G049400' => 'mes', 'Mapoly0009s0186' => 'mpo', 'Mapoly0036s0118' => 'mpo', 'Mapoly0101s0046' => 'mpo', 'MBI04_g30218_MAGBIO' => 'mbi', 'MBI04_g35564_MAGBIO' => 'mbi', 'MBI12_g34011_MAGBIO' => 'mbi', 'MBI14_g04655_MAGBIO' => 'mbi', 'MCO07G653' => 'mco', 'MCO10G173' => 'mco', 'MD01G1087100' => 'mdo', 'MD01G1104200' => 'mdo', 'MD02G1205100' => 'mdo', 'MD04G1079200' => 'mdo', 'MD04G1131400' => 'mdo', 'MD07G1121600' => 'mdo', 'MD07G1157300' => 'mdo', 'MD07G1171000' => 'mdo', 'MD12G1144500' => 'mdo', 'Medtr1g094610' => 'mtr', 'Medtr4g021795' => 'mtr', 'Medtr4g023760' => 'mtr', 'Medtr7g118050' => 'mtr', 'MELO3C005582.2' => 'cme', 'MELO3C005989.2' => 'cme', 'MELO3C006192.2' => 'cme', 'MELO3C009248.2' => 'cme', 'MELO3C019817.2' => 'cme', 'Migut.B01625' => 'egut', 'Migut.B01915' => 'egut', 'Migut.F01721' => 'egut', 'Migut.J00314' => 'egut', 'MSTRG.20742' => 'ama', 'MSTRG.8134' => 'ama', 'Nitab4.5_0000096g0010' => 'nta', 'Nitab4.5_0000202g0030' => 'nta', 'Nitab4.5_0000216g0370' => 'nta', 'Nitab4.5_0000457g0230' => 'nta', 'Nitab4.5_0001702g0170' => 'nta', 'Nitab4.5_0003607g0010' => 'nta', 'Nitab4.5_0004917g0020' => 'nta', 'Nitab4.5_0007059g0010' => 'nta', 'Nitab4.5_0007184g0010' => 'nta', 'Nitab4.5_0007346g0020' => 'nta', 'Nn1g00410' => 'nnu', 'Nn1g01252' => 'nnu', 'Nn2g11168' => 'nnu', 'Nn2g13403' => 'nnu', 'Nn2g13760' => 'nnu', 'Nn4g26380' => 'nnu', 'Oeu000806.2' => 'oeu', 'Oeu005788.1' => 'oeu', 'Oeu006900.3' => 'oeu', 'Oeu007797.1' => 'oeu', 'Oeu011932.1' => 'oeu', 'Oeu022739.1' => 'oeu', 'Oeu037918.1' => 'oeu', 'Oeu055490.2' => 'oeu', 'Os01g0844400' => 'osa', 'Os02g0819100' => 'osa', 'Os03g0804300' => 'osa', 'Os05g0458000' => 'osa', 'Os07g0467800' => 'osa', 'Os12g0602200' => 'osa', 'Peaxi162Scf00013g03444' => 'pax', 'Peaxi162Scf00094g01120' => 'pax', 'Peaxi162Scf00191g01211' => 'pax', 'Peaxi162Scf00238g01110' => 'pax', 'Peaxi162Scf00330g00719' => 'pax', 'Peaxi162Scf00627g00018' => 'pax', 'PGR031G2686' => 'pgr', 'PGR042G0809' => 'pgr', 'PGR142G0193' => 'pgr', 'PGSC0003DMG400011066' => 'stu', 'PGSC0003DMG400012041' => 'stu', 'PGSC0003DMG400013678' => 'stu', 'PGSC0003DMG400023477' => 'stu', 'PGSC0003DMG400025956' => 'stu', 'PGSC0003DMG401019151' => 'stu', 'Phvul.006G116400' => 'pvu', 'Phvul.007G097300' => 'pvu', 'Phvul.010G015000' => 'pvu', 'Phvul.010G083900' => 'pvu', 'Potri.001G117100' => 'ptr', 'Potri.002G147300' => 'ptr', 'Potri.003G115600' => 'ptr', 'Potri.006G087400' => 'ptr', 'Potri.010G226100' => 'ptr', 'Potri.014G069200' => 'ptr', 'Potri.014G104000' => 'ptr', 'Potri.016G100200' => 'ptr', 'Pp3c10_20450' => 'ppa', 'Pp3c1_42400' => 'ppa', 'Pp3c3_24390' => 'ppa', 'Pp3c3_2860' => 'ppa', 'PRCOL_00003193' => 'pco', 'Prupe.2G144500' => 'ppe', 'Prupe.2G195700' => 'ppe', 'Prupe.2G209800' => 'ppe', 'Prupe.5G080000' => 'ppe', 'Prupe.6G257900' => 'ppe', 'Psat3g001160' => 'psa', 'Psat6g181880' => 'psa', 'Psat7g233720' => 'psa', 'PSO063G7587' => 'pso', 'PSO339G2145' => 'pso', 'PSO339G3369' => 'pso', 'PSO478G2747' => 'pso', 'PSO513G0140' => 'pso', 'PSO782G1614' => 'pso', 'PSO782G4889' => 'pso', 'PSO782G5485' => 'pso', 'PSO801G0241' => 'pso', 'QL07p048854' => 'qlo', 'QL08p046745' => 'qlo', 'QL08p052606' => 'qlo', 'QL08p053414' => 'qlo', 'QL08p054868' => 'qlo', 'RcHm_v2.0_Chr1g0350251' => 'rch', 'RcHm_v2.0_Chr1g0360851' => 'rch', 'RcHm_v2.0_Chr1g0362791' => 'rch', 'RcHm_v2.0_Chr3g0466281' => 'rch', 'RcHm_v2.0_Chr7g0201481' => 'rch', 'Rhsim01G0148600' => 'rsi', 'Rhsim05G0194400' => 'rsi', 'Rhsim07G0000700' => 'rsi', 'Rhsim07G0000800' => 'rsi', 'Rhsim07G0027900' => 'rsi', 'Rhsim09G0149500' => 'rsi', 'RhsimUnG0186900' => 'rsi', 'Sabra01G0089900' => 'sbr', 'Sabra02G0114700' => 'sbr', 'Sabra02G0116300' => 'sbr', 'Sabra03G0080100' => 'sbr', 'Sabra08G0024300' => 'sbr', 'Sabra10G0174300' => 'sbr', 'Sabra14G0048900' => 'sbr', 'Sabra14G0076500' => 'sbr', 'SalBow5G2513' => 'sbo', 'Sc01g0002300' => 'sci', 'Sc01g0004450' => 'sci', 'Sc06g0001680' => 'sci', 'Sc23g0003580' => 'sci', 'Sed0000913' => 'sed', 'Sed0001655' => 'sed', 'Sed0007745' => 'sed', 'Sed0010951' => 'sed', 'Sed0017599' => 'sed', 'Sed0021405' => 'sed', 'Sed0022810' => 'sed', 'SEGI_07099' => 'sgi', 'SEGI_11931' => 'sgi', 'SEGI_13187' => 'sgi', 'SEGI_29958' => 'sgi', 'SEGI_36351' => 'sgi', 'SGA_v2.0_scaffold126G33770' => 'sas', 'SGA_v2.0_scaffold153G37003' => 'sas', 'SGA_v2.0_scaffold2G01359' => 'sas', 'SGA_v2.0_scaffold5G03064' => 'sas', 'SGA_v2.0_scaffold95G28903' => 'sas', 'SHI12701' => 'shi', 'SHI26410' => 'shi', 'SHI38997' => 'shi', 'SHI53759' => 'shi', 'SHI53886' => 'shi', 'SHI54714' => 'shi', 'SMO011G0041' => 'smo', 'SMO146G0251' => 'smo', 'SMO160G0004' => 'smo', 'SMO174G0057' => 'smo', 'SMO244G0089' => 'smo', 'SMO296G0011' => 'smo', 'Solyc01g091280.3' => 'sly', 'Solyc05g047610.3' => 'sly', 'Solyc05g047640.3' => 'sly', 'Solyc05g055630.3' => 'sly', 'Solyc10g018160.2' => 'sly', 'Solyc10g084820.2' => 'sly', 'Solyc10g086565.2' => 'sly', 'Sopen01g037030' => 'spe', 'Sopen05g027920' => 'spe', 'Sopen05g034070' => 'spe', 'Sopen10g007260' => 'spe', 'Sopen10g034260' => 'spe', 'Sopen10g035950' => 'spe', 'Sp3g07710' => 'spa', 'Sp4g27420' => 'spa', 'Sp5g02450' => 'spa', 'Sp6g01280' => 'spa', 'Sp6g38480' => 'spa', 'Sp7g20780' => 'spa', 'TAR374G1413' => 'tar', 'TAR623G1777' => 'tar', 'TAR629G2370' => 'tar', 'TAR633G1759' => 'tar', 'TAR636G3387' => 'tar', 'THA.LOC104802447' => 'tha', 'THA.LOC104813916' => 'tha', 'THA.LOC104816423' => 'tha', 'THA.LOC104817246' => 'tha', 'THA.LOC104825895' => 'tha', 'Thecc.01G335200' => 'tca', 'Thecc.01G377400' => 'tca', 'Thecc.03G262200' => 'tca', 'Thecc.05G036800' => 'tca', 'Thecc.10G080500' => 'tca', 'Thecc.10G080800' => 'tca', 'Thhalv10001560m.g' => 'esa', 'Thhalv10006120m.g' => 'esa', 'Thhalv10014375m.g' => 'esa', 'Thhalv10021264m.g' => 'esa', 'Thhalv10028856m.g' => 'esa', 'TPR.G1914' => 'tpr', 'TPR.G4757' => 'tpr', 'TPR.G5595' => 'tpr', 'TWI14G0952' => 'twi', 'TWI14G1307' => 'twi', 'TWI38G2143' => 'twi', 'TWI59G0826' => 'twi', 'TWI77G0527' => 'twi', 'TWI81G0150' => 'twi', 'unitig_21.g21018' => 'ugi', 'unitig_26.g9725' => 'ugi', 'unitig_744.g24653' => 'ugi', 'unitig_749.g13778' => 'ugi', 'unitig_899.g15035' => 'ugi', 'vmacro04296' => 'vma', 'vmacro04852' => 'vma', 'vmacro13404' => 'vma', 'vmacro20169' => 'vma', 'vmacro21014' => 'vma', 'VMungo0331G0237' => 'vmu', 'VMungo0331G0706' => 'vmu', 'VMungo0331G1361' => 'vmu', 'VMungo0331G1489' => 'vmu', 'VMungo0540G1037' => 'vmu', 'VMungo0720G2487' => 'vmu', 'VMungo0720G2721' => 'vmu', 'Zm00001eb086860' => 'zma', 'Zm00001eb104760' => 'zma', 'Zm00001eb148220' => 'zma', 'Zm00001eb259030' => 'zma', 'Zm00001eb289590' => 'zma', 'Zm00001eb420150' => 'zma' ), 'gf_id' => 'HOM05D000968', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000968' ), 'data_identifier' => 'HOM05D000968', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000968', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p31690' => 'bna', 'A03p36040' => 'bna', 'A03p53730' => 'bna', 'A04p01410' => 'bna', 'A05p05420' => 'bna', 'A05p39630' => 'bna', 'A05p39640' => 'bna', 'A09p00970' => 'bna', 'A09p53060' => 'bna', 'A10p31890' => 'bna', 'Aa31LG10G15040' => 'aar', 'Aa31LG1G21090' => 'aar', 'Aa31LG1G26900' => 'aar', 'Aa31LG3G1820' => 'aar', 'Aa31LG5G1100' => 'aar', 'Aa31LG6G4740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2265' => 'aag', 'Actinidia07998' => 'ach', 'Actinidia11266' => 'ach', 'Actinidia12682' => 'ach', 'Actinidia26479' => 'ach', 'Actinidia31406' => 'ach', 'Actinidia32437' => 'ach', 'Actinidia38862' => 'ach', 'Ah.05g174230' => 'amhyb', 'Ah.05g179070' => 'amhyb', 'Ah.05g179090' => 'amhyb', 'Ah.12g059950' => 'amhyb', 'AL3G20480' => 'aly', 'AL4G44520' => 'aly', 'AL5G43110' => 'aly', 'AL6G13890' => 'aly', 'AL6G52620' => 'aly', 'AL7G30830' => 'aly', 'Aqoxy1G00899' => 'aox', 'Aqoxy5G04333' => 'aox', 'Aqoxy7G00641' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3IZ0NN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4EF6AW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W9P8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79GA3M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C43NQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFCU6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G95YVJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCHK29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LU1UG8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX91RN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGB4B1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8DA0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9H7JI' => 'arhy', 'AT3G09320' => 'ath', 'AT3G60800' => 'ath', 'AT4G00840' => 'ath', 'AT4G22750' => 'ath', 'AT5G04270' => 'ath', 'ATR0090G003' => 'atr', 'ATR0559G349' => 'atr', 'ATR0680G261' => 'atr', 'ATR0810G048' => 'atr', 'Atru.chr12.831' => 'acertr', 'Atru.chr5.303' => 'acertr', 'Atru.chr5.748' => 'acertr', 'Atru.chr8.1999' => 'acertr', 'Atru.chr9.1436' => 'acertr', 'AUR62004211' => 'cqu', 'AUR62004548' => 'cqu', 'AUR62013637' => 'cqu', 'AUR62022662' => 'cqu', 'AUR62025777' => 'cqu', 'AUR62042386' => 'cqu', 'BcaB01g02310' => 'bca', 'BcaB01g06062' => 'bca', 'BcaB02g08975' => 'bca', 'BcaB02g08980' => 'bca', 'BcaC01g04228' => 'bca', 'BcaC01g06830' => 'bca', 'BcaC02g10186' => 'bca', 'BcaC02g12214' => 'bca', 'BcaC04g24101' => 'bca', 'BcaC05g29520' => 'bca', 'BcaC05g29661' => 'bca', 'BcaC06g32130' => 'bca', 'BcaC06g32131' => 'bca', 'BcaC07g40601' => 'bca', 'BcaC07g42641' => 'bca', 'BcaNung01038' => 'bca', 'BcaNung01676' => 'bca', 'BcaNung02480' => 'bca', 'BcaNung07376' => 'bca', 'BolC3t16146H' => 'bol', 'BolC3t16637H' => 'bol', 'BolC4t22257H' => 'bol', 'BolC4t24728H' => 'bol', 'BolC5t34517H' => 'bol', 'BolC7t45703H' => 'bol', 'BolC8t51166H' => 'bol', 'BolC9t53038H' => 'bol', 'BolC9t60000H' => 'bol', 'BraA01t01345Z' => 'bra', 'BraA01t01346Z' => 'bra', 'BraA01t01348Z' => 'bra', 'BraA03t12347Z' => 'bra', 'BraA03t12775Z' => 'bra', 'BraA03t14439Z' => 'bra', 'BraA04t15860Z' => 'bra', 'BraA05t19511Z' => 'bra', 'BraA05t22746Z' => 'bra', 'BraA09t35767Z' => 'bra', 'BraA09t40732Z' => 'bra', 'BraA10t45233Z' => 'bra', 'C03p38720' => 'bna', 'C03p43680' => 'bna', 'C04p06350' => 'bna', 'C04p31800' => 'bna', 'C05p58680' => 'bna', 'C07p52110' => 'bna', 'C08p35760' => 'bna', 'C09p01050' => 'bna', 'C09p72600' => 'bna', 'CAN.G106.2' => 'can', 'CAN.G1482.1' => 'can', 'CAN.G324.12' => 'can', 'CAN.G388.20' => 'can', 'CAN.G412.7' => 'can', 'CAN.G694.32' => 'can', 'CAN.G92.12' => 'can', 'CANSAT11G2353' => 'cansat', 'CANSAT21G1398' => 'cansat', 'CANSAT56G2456' => 'cansat', 'CANSAT56G3031' => 'cansat', 'CANSAT56G4539' => 'cansat', 'CARHR083680' => 'chi', 'CARHR171190' => 'chi', 'CARHR209010' => 'chi', 'CARHR229680' => 'chi', 'CARHR249490' => 'chi', 'Carub.0003s0844' => 'cru', 'Carub.0005s2755' => 'cru', 'Carub.0006s0322' => 'cru', 'Carub.0006s3586' => 'cru', 'Carub.0007s1855' => 'cru', 'Ca_07808_v3' => 'car', 'Ca_09535_v3' => 'car', 'Ca_10548_v3' => 'car', 'Ca_19913_v3' => 'car', 'Ca_19916_v3' => 'car', 'Ca_19975_v3' => 'car', 'CBR_g22876' => 'cbr', 'CBR_g22879' => 'cbr', 'CBR_g38491' => 'cbr', 'CBR_g54185' => 'cbr', 'CBR_g54190' => 'cbr', 'Cc02_g11020' => 'ccan', 'Cc02_g23920' => 'ccan', 'Cc02_g39860' => 'ccan', 'Cc02_g39870' => 'ccan', 'Cc03_g06760' => 'ccan', 'Cc06_g02450' => 'ccan', 'Cc09_g09450' => 'ccan', 'CDE02G1959' => 'cde', 'CDE04G0600' => 'cde', 'CDE07G1996' => 'cde', 'CDE07G2078' => 'cde', 'CDE11G0611' => 'cde', 'Cfa001683' => 'cfa', 'Cfa001734' => 'cfa', 'Cfa001737' => 'cfa', 'Cfa003751' => 'cfa', 'Cfa012019' => 'cfa', 'Cfa017353' => 'cfa', 'Cfa017732' => 'cfa', 'Cfa022464' => 'cfa', 'Ciclev10012400m.g' => 'ccl', 'Ciclev10021242m.g' => 'ccl', 'Ciclev10021302m.g' => 'ccl', 'Ciclev10021463m.g' => 'ccl', 'Ciclev10032359m.g' => 'ccl', 'CiPaw.01G081000' => 'cil', 'CiPaw.01G262500' => 'cil', 'CiPaw.01G269800' => 'cil', 'CiPaw.02G168400' => 'cil', 'CiPaw.05G119500' => 'cil', 'CiPaw.11G147300' => 'cil', 'ClCG01G003630' => 'cla', 'ClCG05G000510' => 'cla', 'ClCG05G002300' => 'cla', 'ClCG08G007650' => 'cla', 'ClCG10G021250' => 'cla', 'COL.COLO4_06218' => 'col', 'COL.COLO4_12538' => 'col', 'COL.COLO4_14775' => 'col', 'COL.COLO4_23875' => 'col', 'Cpa.g.sc141.16' => 'cpa', 'Cpa.g.sc169.16' => 'cpa', 'Cpa.g.sc244.4' => 'cpa', 'Cpa.g.sc244.5' => 'cpa', 'Cpa.g.sc29.87' => 'cpa', 'Cpa.g.sc53.115' => 'cpa', 'Cre03.g207502' => 'cre', 'Cre06.g277000' => 'cre', 'Cre09.g394050' => 'cre', 'CsaV3_3G007680' => 'csa', 'CsaV3_3G009710' => 'csa', 'CsaV3_3G034790' => 'csa', 'CsaV3_5G003750' => 'csa', 'CsaV3_6G036620' => 'csa', 'CSS0002288' => 'camsi', 'CSS0011250' => 'camsi', 'CSS0021619' => 'camsi', 'CSS0046701' => 'camsi', 'DCAR_006420' => 'dca', 'DCAR_006865' => 'dca', 'DCAR_008558' => 'dca', 'DCAR_028754' => 'dca', 'DCAR_028755' => 'dca', 'Dinv31218' => 'din', 'Dinv32371' => 'din', 'Dinv34250' => 'din', 'Dinv37156' => 'din', 'Dinv43704' => 'din', 'Duzib093G1811' => 'dzi', 'Duzib106G1622' => 'dzi', 'Duzib114G0504' => 'dzi', 'Duzib128G0338' => 'dzi', 'Duzib128G1577' => 'dzi', 'Duzib133G0104' => 'dzi', 'Duzib133G1080' => 'dzi', 'Duzib138G0324' => 'dzi', 'Duzib138G0394' => 'dzi', 'Duzib205G0122' => 'dzi', 'Duzib268G1020' => 'dzi', 'Duzib268G1359' => 'dzi', 'ECA232G3929' => 'eca', 'ECA236G2210' => 'eca', 'ECA236G2287' => 'eca', 'ECA240G4568' => 'eca', 'ECA247G0894' => 'eca', 'EL10Ac1g00200' => 'bvu', 'EL10Ac1g00886' => 'bvu', 'EL10As1g23091' => 'bvu', 'EL10As1g23092' => 'bvu', 'Eucgr.A01284' => 'egr', 'Eucgr.A01285' => 'egr', 'Eucgr.D02456' => 'egr', 'Eucgr.E00018' => 'egr', 'Eucgr.E01439' => 'egr', 'Eucgr.G02859' => 'egr', 'FAN01G0168' => 'fan', 'FAN01G0453' => 'fan', 'FAN01G2761' => 'fan', 'FAN02G1239' => 'fan', 'FAN03G0645' => 'fan', 'FAN03G2707' => 'fan', 'FAN03G2978' => 'fan', 'FAN04G0227' => 'fan', 'FAN06G0091' => 'fan', 'FAN06G1418' => 'fan', 'FAN06G1512' => 'fan', 'FAN06G1986' => 'fan', 'FAN06G2905' => 'fan', 'FAN06G4325' => 'fan', 'FAN08G0033' => 'fan', 'FAN09G0642' => 'fan', 'FAN10G1763' => 'fan', 'FAN10G2026' => 'fan', 'FAN10G2513' => 'fan', 'FAN10G3402' => 'fan', 'FAN10G3564' => 'fan', 'FAN10G3987' => 'fan', 'FAN13G1490' => 'fan', 'FAN14G5857' => 'fan', 'FAN18G1188' => 'fan', 'FvH4_5g00750' => 'fve', 'FvH4_6g13410' => 'fve', 'FvH4_7g11740' => 'fve', 'FvH4_7g17410' => 'fve', 'FvH4_7g18860' => 'fve', 'Glyma.01G099100' => 'gma', 'Glyma.01G142300' => 'gma', 'Glyma.03G025500' => 'gma', 'Glyma.03G069700' => 'gma', 'Glyma.03G260000' => 'gma', 'Glyma.09G269800' => 'gma', 'Glyma.10G208700' => 'gma', 'Glyma.18G220400' => 'gma', 'Glyma.20G182000' => 'gma', 'Gohir.A01G221726' => 'ghi', 'Gohir.A07G134600' => 'ghi', 'Gohir.A07G146000' => 'ghi', 'Gohir.A08G173900' => 'ghi', 'Gohir.A09G194900' => 'ghi', 'Gohir.A10G204100' => 'ghi', 'Gohir.A11G080600' => 'ghi', 'Gohir.A11G327500' => 'ghi', 'Gohir.A12G101800' => 'ghi', 'Gohir.D01G211200' => 'ghi', 'Gohir.D07G139200' => 'ghi', 'Gohir.D07G152100' => 'ghi', 'Gohir.D08G192600' => 'ghi', 'Gohir.D09G189200' => 'ghi', 'Gohir.D10G212000' => 'ghi', 'Gohir.D11G085200' => 'ghi', 'Gohir.D11G346400' => 'ghi', 'Gohir.D12G104800' => 'ghi', 'Gorai.001G151300' => 'gra', 'Gorai.001G174100' => 'gra', 'Gorai.002G257000' => 'gra', 'Gorai.004G202600' => 'gra', 'Gorai.007G090900' => 'gra', 'Gorai.007G376700' => 'gra', 'Gorai.008G114100' => 'gra', 'Gorai.011G237900' => 'gra', 'GSVIVG01005450001' => 'vvi', 'GSVIVG01016232001' => 'vvi', 'GSVIVG01026157001' => 'vvi', 'GSVIVG01027419001' => 'vvi', 'GSVIVG01027631001' => 'vvi', 'GSVIVG01034143001' => 'vvi', 'HanXRQChr03g0093921' => 'han', 'HanXRQChr04g0120001' => 'han', 'HanXRQChr04g0122561' => 'han', 'HanXRQChr09g0246851' => 'han', 'HanXRQChr10g0293311' => 'han', 'HanXRQChr13g0425231' => 'han', 'HanXRQChr16g0532571' => 'han', 'Haze_09050' => 'cav', 'Haze_15715' => 'cav', 'Haze_15716' => 'cav', 'Haze_16803' => 'cav', 'Haze_16850' => 'cav', 'Hma1.2p1_0301F.1_g118655' => 'hma', 'Hma1.2p1_0309F.1_g120590' => 'hma', 'Hma1.2p1_0936F.1_g238900' => 'hma', 'Hma1.2p1_3552F.1_g336740' => 'hma', 'HPP92_003520' => 'vpl', 'HPP92_006628' => 'vpl', 'HPP92_006645' => 'vpl', 'HPP92_014669' => 'vpl', 'HPP92_015077' => 'vpl', 'Hund16742' => 'sun', 'Hund17022' => 'sun', 'Lalb_Chr02g0152131' => 'lal', 'Lalb_Chr05g0225371' => 'lal', 'Lalb_Chr07g0189841' => 'lal', 'Lalb_Chr07g0192961' => 'lal', 'Lalb_Chr12g0208221' => 'lal', 'Lalb_Chr13g0291211' => 'lal', 'Lalb_Chr13g0291781' => 'lal', 'Lalb_Chr18g0044651' => 'lal', 'Lalb_Chr21g0313731' => 'lal', 'Lj1g0022533' => 'lja', 'Lj2A18T50' => 'lonja', 'Lj2A92G93' => 'lonja', 'Lj3A965T73' => 'lonja', 'Lj3g0000673' => 'lja', 'Lj3g0002666' => 'lja', 'Lj4g0016985' => 'lja', 'Lj5g0003625' => 'lja', 'Lj7A529G36' => 'lonja', 'Lj9A569T49' => 'lonja', 'Lj9A604T63' => 'lonja', 'Lsat_1_v5_gn_3_132060' => 'lsa', 'Lsat_1_v5_gn_4_68941' => 'lsa', 'Lsat_1_v5_gn_5_95580' => 'lsa', 'Lsat_1_v5_gn_7_161' => 'lsa', 'Lsat_1_v5_gn_7_7041' => 'lsa', 'Lsat_1_v5_gn_9_33481' => 'lsa', 'Lsat_1_v5_gn_9_68260' => 'lsa', 'Manes.01G073100' => 'mes', 'Manes.01G266300' => 'mes', 'Manes.02G033300' => 'mes', 'Manes.05G017900' => 'mes', 'Manes.05G046100' => 'mes', 'Manes.08G080900' => 'mes', 'Manes.10G049400' => 'mes', 'Mapoly0009s0186' => 'mpo', 'Mapoly0036s0118' => 'mpo', 'Mapoly0101s0046' => 'mpo', 'MBI04_g30218_MAGBIO' => 'mbi', 'MBI04_g35564_MAGBIO' => 'mbi', 'MBI12_g34011_MAGBIO' => 'mbi', 'MBI14_g04655_MAGBIO' => 'mbi', 'MCO07G653' => 'mco', 'MCO10G173' => 'mco', 'MD01G1087100' => 'mdo', 'MD01G1104200' => 'mdo', 'MD02G1205100' => 'mdo', 'MD04G1079200' => 'mdo', 'MD04G1131400' => 'mdo', 'MD07G1121600' => 'mdo', 'MD07G1157300' => 'mdo', 'MD07G1171000' => 'mdo', 'MD12G1144500' => 'mdo', 'Medtr1g094610' => 'mtr', 'Medtr4g021795' => 'mtr', 'Medtr4g023760' => 'mtr', 'Medtr7g118050' => 'mtr', 'MELO3C005582.2' => 'cme', 'MELO3C005989.2' => 'cme', 'MELO3C006192.2' => 'cme', 'MELO3C009248.2' => 'cme', 'MELO3C019817.2' => 'cme', 'Migut.B01625' => 'egut', 'Migut.B01915' => 'egut', 'Migut.F01721' => 'egut', 'Migut.J00314' => 'egut', 'MSTRG.20742' => 'ama', 'MSTRG.8134' => 'ama', 'Nitab4.5_0000096g0010' => 'nta', 'Nitab4.5_0000202g0030' => 'nta', 'Nitab4.5_0000216g0370' => 'nta', 'Nitab4.5_0000457g0230' => 'nta', 'Nitab4.5_0001702g0170' => 'nta', 'Nitab4.5_0003607g0010' => 'nta', 'Nitab4.5_0004917g0020' => 'nta', 'Nitab4.5_0007059g0010' => 'nta', 'Nitab4.5_0007184g0010' => 'nta', 'Nitab4.5_0007346g0020' => 'nta', 'Nn1g00410' => 'nnu', 'Nn1g01252' => 'nnu', 'Nn2g11168' => 'nnu', 'Nn2g13403' => 'nnu', 'Nn2g13760' => 'nnu', 'Nn4g26380' => 'nnu', 'Oeu000806.2' => 'oeu', 'Oeu005788.1' => 'oeu', 'Oeu006900.3' => 'oeu', 'Oeu007797.1' => 'oeu', 'Oeu011932.1' => 'oeu', 'Oeu022739.1' => 'oeu', 'Oeu037918.1' => 'oeu', 'Oeu055490.2' => 'oeu', 'Os01g0844400' => 'osa', 'Os02g0819100' => 'osa', 'Os03g0804300' => 'osa', 'Os05g0458000' => 'osa', 'Os07g0467800' => 'osa', 'Os12g0602200' => 'osa', 'Peaxi162Scf00013g03444' => 'pax', 'Peaxi162Scf00094g01120' => 'pax', 'Peaxi162Scf00191g01211' => 'pax', 'Peaxi162Scf00238g01110' => 'pax', 'Peaxi162Scf00330g00719' => 'pax', 'Peaxi162Scf00627g00018' => 'pax', 'PGR031G2686' => 'pgr', 'PGR042G0809' => 'pgr', 'PGR142G0193' => 'pgr', 'PGSC0003DMG400011066' => 'stu', 'PGSC0003DMG400012041' => 'stu', 'PGSC0003DMG400013678' => 'stu', 'PGSC0003DMG400023477' => 'stu', 'PGSC0003DMG400025956' => 'stu', 'PGSC0003DMG401019151' => 'stu', 'Phvul.006G116400' => 'pvu', 'Phvul.007G097300' => 'pvu', 'Phvul.010G015000' => 'pvu', 'Phvul.010G083900' => 'pvu', 'Potri.001G117100' => 'ptr', 'Potri.002G147300' => 'ptr', 'Potri.003G115600' => 'ptr', 'Potri.006G087400' => 'ptr', 'Potri.010G226100' => 'ptr', 'Potri.014G069200' => 'ptr', 'Potri.014G104000' => 'ptr', 'Potri.016G100200' => 'ptr', 'Pp3c10_20450' => 'ppa', 'Pp3c1_42400' => 'ppa', 'Pp3c3_24390' => 'ppa', 'Pp3c3_2860' => 'ppa', 'PRCOL_00003193' => 'pco', 'Prupe.2G144500' => 'ppe', 'Prupe.2G195700' => 'ppe', 'Prupe.2G209800' => 'ppe', 'Prupe.5G080000' => 'ppe', 'Prupe.6G257900' => 'ppe', 'Psat3g001160' => 'psa', 'Psat6g181880' => 'psa', 'Psat7g233720' => 'psa', 'PSO063G7587' => 'pso', 'PSO339G2145' => 'pso', 'PSO339G3369' => 'pso', 'PSO478G2747' => 'pso', 'PSO513G0140' => 'pso', 'PSO782G1614' => 'pso', 'PSO782G4889' => 'pso', 'PSO782G5485' => 'pso', 'PSO801G0241' => 'pso', 'QL07p048854' => 'qlo', 'QL08p046745' => 'qlo', 'QL08p052606' => 'qlo', 'QL08p053414' => 'qlo', 'QL08p054868' => 'qlo', 'RcHm_v2.0_Chr1g0350251' => 'rch', 'RcHm_v2.0_Chr1g0360851' => 'rch', 'RcHm_v2.0_Chr1g0362791' => 'rch', 'RcHm_v2.0_Chr3g0466281' => 'rch', 'RcHm_v2.0_Chr7g0201481' => 'rch', 'Rhsim01G0148600' => 'rsi', 'Rhsim05G0194400' => 'rsi', 'Rhsim07G0000700' => 'rsi', 'Rhsim07G0000800' => 'rsi', 'Rhsim07G0027900' => 'rsi', 'Rhsim09G0149500' => 'rsi', 'RhsimUnG0186900' => 'rsi', 'Sabra01G0089900' => 'sbr', 'Sabra02G0114700' => 'sbr', 'Sabra02G0116300' => 'sbr', 'Sabra03G0080100' => 'sbr', 'Sabra08G0024300' => 'sbr', 'Sabra10G0174300' => 'sbr', 'Sabra14G0048900' => 'sbr', 'Sabra14G0076500' => 'sbr', 'SalBow5G2513' => 'sbo', 'Sc01g0002300' => 'sci', 'Sc01g0004450' => 'sci', 'Sc06g0001680' => 'sci', 'Sc23g0003580' => 'sci', 'Sed0000913' => 'sed', 'Sed0001655' => 'sed', 'Sed0007745' => 'sed', 'Sed0010951' => 'sed', 'Sed0017599' => 'sed', 'Sed0021405' => 'sed', 'Sed0022810' => 'sed', 'SEGI_07099' => 'sgi', 'SEGI_11931' => 'sgi', 'SEGI_13187' => 'sgi', 'SEGI_29958' => 'sgi', 'SEGI_36351' => 'sgi', 'SGA_v2.0_scaffold126G33770' => 'sas', 'SGA_v2.0_scaffold153G37003' => 'sas', 'SGA_v2.0_scaffold2G01359' => 'sas', 'SGA_v2.0_scaffold5G03064' => 'sas', 'SGA_v2.0_scaffold95G28903' => 'sas', 'SHI12701' => 'shi', 'SHI26410' => 'shi', 'SHI38997' => 'shi', 'SHI53759' => 'shi', 'SHI53886' => 'shi', 'SHI54714' => 'shi', 'SMO011G0041' => 'smo', 'SMO146G0251' => 'smo', 'SMO160G0004' => 'smo', 'SMO174G0057' => 'smo', 'SMO244G0089' => 'smo', 'SMO296G0011' => 'smo', 'Solyc01g091280.3' => 'sly', 'Solyc05g047610.3' => 'sly', 'Solyc05g047640.3' => 'sly', 'Solyc05g055630.3' => 'sly', 'Solyc10g018160.2' => 'sly', 'Solyc10g084820.2' => 'sly', 'Solyc10g086565.2' => 'sly', 'Sopen01g037030' => 'spe', 'Sopen05g027920' => 'spe', 'Sopen05g034070' => 'spe', 'Sopen10g007260' => 'spe', 'Sopen10g034260' => 'spe', 'Sopen10g035950' => 'spe', 'Sp3g07710' => 'spa', 'Sp4g27420' => 'spa', 'Sp5g02450' => 'spa', 'Sp6g01280' => 'spa', 'Sp6g38480' => 'spa', 'Sp7g20780' => 'spa', 'TAR374G1413' => 'tar', 'TAR623G1777' => 'tar', 'TAR629G2370' => 'tar', 'TAR633G1759' => 'tar', 'TAR636G3387' => 'tar', 'THA.LOC104802447' => 'tha', 'THA.LOC104813916' => 'tha', 'THA.LOC104816423' => 'tha', 'THA.LOC104817246' => 'tha', 'THA.LOC104825895' => 'tha', 'Thecc.01G335200' => 'tca', 'Thecc.01G377400' => 'tca', 'Thecc.03G262200' => 'tca', 'Thecc.05G036800' => 'tca', 'Thecc.10G080500' => 'tca', 'Thecc.10G080800' => 'tca', 'Thhalv10001560m.g' => 'esa', 'Thhalv10006120m.g' => 'esa', 'Thhalv10014375m.g' => 'esa', 'Thhalv10021264m.g' => 'esa', 'Thhalv10028856m.g' => 'esa', 'TPR.G1914' => 'tpr', 'TPR.G4757' => 'tpr', 'TPR.G5595' => 'tpr', 'TWI14G0952' => 'twi', 'TWI14G1307' => 'twi', 'TWI38G2143' => 'twi', 'TWI59G0826' => 'twi', 'TWI77G0527' => 'twi', 'TWI81G0150' => 'twi', 'unitig_21.g21018' => 'ugi', 'unitig_26.g9725' => 'ugi', 'unitig_744.g24653' => 'ugi', 'unitig_749.g13778' => 'ugi', 'unitig_899.g15035' => 'ugi', 'vmacro04296' => 'vma', 'vmacro04852' => 'vma', 'vmacro13404' => 'vma', 'vmacro20169' => 'vma', 'vmacro21014' => 'vma', 'VMungo0331G0237' => 'vmu', 'VMungo0331G0706' => 'vmu', 'VMungo0331G1361' => 'vmu', 'VMungo0331G1489' => 'vmu', 'VMungo0540G1037' => 'vmu', 'VMungo0720G2487' => 'vmu', 'VMungo0720G2721' => 'vmu', 'Zm00001eb086860' => 'zma', 'Zm00001eb104760' => 'zma', 'Zm00001eb148220' => 'zma', 'Zm00001eb259030' => 'zma', 'Zm00001eb289590' => 'zma', 'Zm00001eb420150' => 'zma' ) $gf_id = 'HOM05D000968' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000968' ) $data_identifier = 'HOM05D000968' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 19, 'bol' => (int) 9, 'bra' => (int) 12, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 5, 'ccan' => (int) 7, 'cde' => (int) 5, 'cfa' => (int) 8, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 4, 'dca' => (int) 5, 'din' => (int) 5, 'dzi' => (int) 12, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 25, 'fve' => (int) 5, 'gma' => (int) 9, 'ghi' => (int) 18, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 7, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 5, 'sun' => (int) 2, 'lal' => (int) 9, 'lja' => (int) 5, 'lonja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 9, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 2, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 3, 'stu' => (int) 6, 'pvu' => (int) 4, 'ptr' => (int) 8, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 3, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 1, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 5, 'sas' => (int) 5, 'shi' => (int) 6, 'smo' => (int) 6, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 3, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420150' $species_info = array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ) $local_species = 'egut' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000968', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p31690' => 'bna', 'A03p36040' => 'bna', 'A03p53730' => 'bna', 'A04p01410' => 'bna', 'A05p05420' => 'bna', 'A05p39630' => 'bna', 'A05p39640' => 'bna', 'A09p00970' => 'bna', 'A09p53060' => 'bna', 'A10p31890' => 'bna', 'Aa31LG10G15040' => 'aar', 'Aa31LG1G21090' => 'aar', 'Aa31LG1G26900' => 'aar', 'Aa31LG3G1820' => 'aar', 'Aa31LG5G1100' => 'aar', 'Aa31LG6G4740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2265' => 'aag', 'Actinidia07998' => 'ach', 'Actinidia11266' => 'ach', 'Actinidia12682' => 'ach', 'Actinidia26479' => 'ach', 'Actinidia31406' => 'ach', 'Actinidia32437' => 'ach', 'Actinidia38862' => 'ach', 'Ah.05g174230' => 'amhyb', 'Ah.05g179070' => 'amhyb', 'Ah.05g179090' => 'amhyb', 'Ah.12g059950' => 'amhyb', 'AL3G20480' => 'aly', 'AL4G44520' => 'aly', 'AL5G43110' => 'aly', 'AL6G13890' => 'aly', 'AL6G52620' => 'aly', 'AL7G30830' => 'aly', 'Aqoxy1G00899' => 'aox', 'Aqoxy5G04333' => 'aox', 'Aqoxy7G00641' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3IZ0NN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4EF6AW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W9P8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79GA3M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C43NQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFCU6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G95YVJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCHK29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LU1UG8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX91RN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGB4B1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8DA0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9H7JI' => 'arhy', 'AT3G09320' => 'ath', 'AT3G60800' => 'ath', 'AT4G00840' => 'ath', 'AT4G22750' => 'ath', 'AT5G04270' => 'ath', 'ATR0090G003' => 'atr', 'ATR0559G349' => 'atr', 'ATR0680G261' => 'atr', 'ATR0810G048' => 'atr', 'Atru.chr12.831' => 'acertr', 'Atru.chr5.303' => 'acertr', 'Atru.chr5.748' => 'acertr', 'Atru.chr8.1999' => 'acertr', 'Atru.chr9.1436' => 'acertr', 'AUR62004211' => 'cqu', 'AUR62004548' => 'cqu', 'AUR62013637' => 'cqu', 'AUR62022662' => 'cqu', 'AUR62025777' => 'cqu', 'AUR62042386' => 'cqu', 'BcaB01g02310' => 'bca', 'BcaB01g06062' => 'bca', 'BcaB02g08975' => 'bca', 'BcaB02g08980' => 'bca', 'BcaC01g04228' => 'bca', 'BcaC01g06830' => 'bca', 'BcaC02g10186' => 'bca', 'BcaC02g12214' => 'bca', 'BcaC04g24101' => 'bca', 'BcaC05g29520' => 'bca', 'BcaC05g29661' => 'bca', 'BcaC06g32130' => 'bca', 'BcaC06g32131' => 'bca', 'BcaC07g40601' => 'bca', 'BcaC07g42641' => 'bca', 'BcaNung01038' => 'bca', 'BcaNung01676' => 'bca', 'BcaNung02480' => 'bca', 'BcaNung07376' => 'bca', 'BolC3t16146H' => 'bol', 'BolC3t16637H' => 'bol', 'BolC4t22257H' => 'bol', 'BolC4t24728H' => 'bol', 'BolC5t34517H' => 'bol', 'BolC7t45703H' => 'bol', 'BolC8t51166H' => 'bol', 'BolC9t53038H' => 'bol', 'BolC9t60000H' => 'bol', 'BraA01t01345Z' => 'bra', 'BraA01t01346Z' => 'bra', 'BraA01t01348Z' => 'bra', 'BraA03t12347Z' => 'bra', 'BraA03t12775Z' => 'bra', 'BraA03t14439Z' => 'bra', 'BraA04t15860Z' => 'bra', 'BraA05t19511Z' => 'bra', 'BraA05t22746Z' => 'bra', 'BraA09t35767Z' => 'bra', 'BraA09t40732Z' => 'bra', 'BraA10t45233Z' => 'bra', 'C03p38720' => 'bna', 'C03p43680' => 'bna', 'C04p06350' => 'bna', 'C04p31800' => 'bna', 'C05p58680' => 'bna', 'C07p52110' => 'bna', 'C08p35760' => 'bna', 'C09p01050' => 'bna', 'C09p72600' => 'bna', 'CAN.G106.2' => 'can', 'CAN.G1482.1' => 'can', 'CAN.G324.12' => 'can', 'CAN.G388.20' => 'can', 'CAN.G412.7' => 'can', 'CAN.G694.32' => 'can', 'CAN.G92.12' => 'can', 'CANSAT11G2353' => 'cansat', 'CANSAT21G1398' => 'cansat', 'CANSAT56G2456' => 'cansat', 'CANSAT56G3031' => 'cansat', 'CANSAT56G4539' => 'cansat', 'CARHR083680' => 'chi', 'CARHR171190' => 'chi', 'CARHR209010' => 'chi', 'CARHR229680' => 'chi', 'CARHR249490' => 'chi', 'Carub.0003s0844' => 'cru', 'Carub.0005s2755' => 'cru', 'Carub.0006s0322' => 'cru', 'Carub.0006s3586' => 'cru', 'Carub.0007s1855' => 'cru', 'Ca_07808_v3' => 'car', 'Ca_09535_v3' => 'car', 'Ca_10548_v3' => 'car', 'Ca_19913_v3' => 'car', 'Ca_19916_v3' => 'car', 'Ca_19975_v3' => 'car', 'CBR_g22876' => 'cbr', 'CBR_g22879' => 'cbr', 'CBR_g38491' => 'cbr', 'CBR_g54185' => 'cbr', 'CBR_g54190' => 'cbr', 'Cc02_g11020' => 'ccan', 'Cc02_g23920' => 'ccan', 'Cc02_g39860' => 'ccan', 'Cc02_g39870' => 'ccan', 'Cc03_g06760' => 'ccan', 'Cc06_g02450' => 'ccan', 'Cc09_g09450' => 'ccan', 'CDE02G1959' => 'cde', 'CDE04G0600' => 'cde', 'CDE07G1996' => 'cde', 'CDE07G2078' => 'cde', 'CDE11G0611' => 'cde', 'Cfa001683' => 'cfa', 'Cfa001734' => 'cfa', 'Cfa001737' => 'cfa', 'Cfa003751' => 'cfa', 'Cfa012019' => 'cfa', 'Cfa017353' => 'cfa', 'Cfa017732' => 'cfa', 'Cfa022464' => 'cfa', 'Ciclev10012400m.g' => 'ccl', 'Ciclev10021242m.g' => 'ccl', 'Ciclev10021302m.g' => 'ccl', 'Ciclev10021463m.g' => 'ccl', 'Ciclev10032359m.g' => 'ccl', 'CiPaw.01G081000' => 'cil', 'CiPaw.01G262500' => 'cil', 'CiPaw.01G269800' => 'cil', 'CiPaw.02G168400' => 'cil', 'CiPaw.05G119500' => 'cil', 'CiPaw.11G147300' => 'cil', 'ClCG01G003630' => 'cla', 'ClCG05G000510' => 'cla', 'ClCG05G002300' => 'cla', 'ClCG08G007650' => 'cla', 'ClCG10G021250' => 'cla', 'COL.COLO4_06218' => 'col', 'COL.COLO4_12538' => 'col', 'COL.COLO4_14775' => 'col', 'COL.COLO4_23875' => 'col', 'Cpa.g.sc141.16' => 'cpa', 'Cpa.g.sc169.16' => 'cpa', 'Cpa.g.sc244.4' => 'cpa', 'Cpa.g.sc244.5' => 'cpa', 'Cpa.g.sc29.87' => 'cpa', 'Cpa.g.sc53.115' => 'cpa', 'Cre03.g207502' => 'cre', 'Cre06.g277000' => 'cre', 'Cre09.g394050' => 'cre', 'CsaV3_3G007680' => 'csa', 'CsaV3_3G009710' => 'csa', 'CsaV3_3G034790' => 'csa', 'CsaV3_5G003750' => 'csa', 'CsaV3_6G036620' => 'csa', 'CSS0002288' => 'camsi', 'CSS0011250' => 'camsi', 'CSS0021619' => 'camsi', 'CSS0046701' => 'camsi', 'DCAR_006420' => 'dca', 'DCAR_006865' => 'dca', 'DCAR_008558' => 'dca', 'DCAR_028754' => 'dca', 'DCAR_028755' => 'dca', 'Dinv31218' => 'din', 'Dinv32371' => 'din', 'Dinv34250' => 'din', 'Dinv37156' => 'din', 'Dinv43704' => 'din', 'Duzib093G1811' => 'dzi', 'Duzib106G1622' => 'dzi', 'Duzib114G0504' => 'dzi', 'Duzib128G0338' => 'dzi', 'Duzib128G1577' => 'dzi', 'Duzib133G0104' => 'dzi', 'Duzib133G1080' => 'dzi', 'Duzib138G0324' => 'dzi', 'Duzib138G0394' => 'dzi', 'Duzib205G0122' => 'dzi', 'Duzib268G1020' => 'dzi', 'Duzib268G1359' => 'dzi', 'ECA232G3929' => 'eca', 'ECA236G2210' => 'eca', 'ECA236G2287' => 'eca', 'ECA240G4568' => 'eca', 'ECA247G0894' => 'eca', 'EL10Ac1g00200' => 'bvu', 'EL10Ac1g00886' => 'bvu', 'EL10As1g23091' => 'bvu', 'EL10As1g23092' => 'bvu', 'Eucgr.A01284' => 'egr', 'Eucgr.A01285' => 'egr', 'Eucgr.D02456' => 'egr', 'Eucgr.E00018' => 'egr', 'Eucgr.E01439' => 'egr', 'Eucgr.G02859' => 'egr', 'FAN01G0168' => 'fan', 'FAN01G0453' => 'fan', 'FAN01G2761' => 'fan', 'FAN02G1239' => 'fan', 'FAN03G0645' => 'fan', 'FAN03G2707' => 'fan', 'FAN03G2978' => 'fan', 'FAN04G0227' => 'fan', 'FAN06G0091' => 'fan', 'FAN06G1418' => 'fan', 'FAN06G1512' => 'fan', 'FAN06G1986' => 'fan', 'FAN06G2905' => 'fan', 'FAN06G4325' => 'fan', 'FAN08G0033' => 'fan', 'FAN09G0642' => 'fan', 'FAN10G1763' => 'fan', 'FAN10G2026' => 'fan', 'FAN10G2513' => 'fan', 'FAN10G3402' => 'fan', 'FAN10G3564' => 'fan', 'FAN10G3987' => 'fan', 'FAN13G1490' => 'fan', 'FAN14G5857' => 'fan', 'FAN18G1188' => 'fan', 'FvH4_5g00750' => 'fve', 'FvH4_6g13410' => 'fve', 'FvH4_7g11740' => 'fve', 'FvH4_7g17410' => 'fve', 'FvH4_7g18860' => 'fve', 'Glyma.01G099100' => 'gma', 'Glyma.01G142300' => 'gma', 'Glyma.03G025500' => 'gma', 'Glyma.03G069700' => 'gma', 'Glyma.03G260000' => 'gma', 'Glyma.09G269800' => 'gma', 'Glyma.10G208700' => 'gma', 'Glyma.18G220400' => 'gma', 'Glyma.20G182000' => 'gma', 'Gohir.A01G221726' => 'ghi', 'Gohir.A07G134600' => 'ghi', 'Gohir.A07G146000' => 'ghi', 'Gohir.A08G173900' => 'ghi', 'Gohir.A09G194900' => 'ghi', 'Gohir.A10G204100' => 'ghi', 'Gohir.A11G080600' => 'ghi', 'Gohir.A11G327500' => 'ghi', 'Gohir.A12G101800' => 'ghi', 'Gohir.D01G211200' => 'ghi', 'Gohir.D07G139200' => 'ghi', 'Gohir.D07G152100' => 'ghi', 'Gohir.D08G192600' => 'ghi', 'Gohir.D09G189200' => 'ghi', 'Gohir.D10G212000' => 'ghi', 'Gohir.D11G085200' => 'ghi', 'Gohir.D11G346400' => 'ghi', 'Gohir.D12G104800' => 'ghi', 'Gorai.001G151300' => 'gra', 'Gorai.001G174100' => 'gra', 'Gorai.002G257000' => 'gra', 'Gorai.004G202600' => 'gra', 'Gorai.007G090900' => 'gra', 'Gorai.007G376700' => 'gra', 'Gorai.008G114100' => 'gra', 'Gorai.011G237900' => 'gra', 'GSVIVG01005450001' => 'vvi', 'GSVIVG01016232001' => 'vvi', 'GSVIVG01026157001' => 'vvi', 'GSVIVG01027419001' => 'vvi', 'GSVIVG01027631001' => 'vvi', 'GSVIVG01034143001' => 'vvi', 'HanXRQChr03g0093921' => 'han', 'HanXRQChr04g0120001' => 'han', 'HanXRQChr04g0122561' => 'han', 'HanXRQChr09g0246851' => 'han', 'HanXRQChr10g0293311' => 'han', 'HanXRQChr13g0425231' => 'han', 'HanXRQChr16g0532571' => 'han', 'Haze_09050' => 'cav', 'Haze_15715' => 'cav', 'Haze_15716' => 'cav', 'Haze_16803' => 'cav', 'Haze_16850' => 'cav', 'Hma1.2p1_0301F.1_g118655' => 'hma', 'Hma1.2p1_0309F.1_g120590' => 'hma', 'Hma1.2p1_0936F.1_g238900' => 'hma', 'Hma1.2p1_3552F.1_g336740' => 'hma', 'HPP92_003520' => 'vpl', 'HPP92_006628' => 'vpl', 'HPP92_006645' => 'vpl', 'HPP92_014669' => 'vpl', 'HPP92_015077' => 'vpl', 'Hund16742' => 'sun', 'Hund17022' => 'sun', 'Lalb_Chr02g0152131' => 'lal', 'Lalb_Chr05g0225371' => 'lal', 'Lalb_Chr07g0189841' => 'lal', 'Lalb_Chr07g0192961' => 'lal', 'Lalb_Chr12g0208221' => 'lal', 'Lalb_Chr13g0291211' => 'lal', 'Lalb_Chr13g0291781' => 'lal', 'Lalb_Chr18g0044651' => 'lal', 'Lalb_Chr21g0313731' => 'lal', 'Lj1g0022533' => 'lja', 'Lj2A18T50' => 'lonja', 'Lj2A92G93' => 'lonja', 'Lj3A965T73' => 'lonja', 'Lj3g0000673' => 'lja', 'Lj3g0002666' => 'lja', 'Lj4g0016985' => 'lja', 'Lj5g0003625' => 'lja', 'Lj7A529G36' => 'lonja', 'Lj9A569T49' => 'lonja', 'Lj9A604T63' => 'lonja', 'Lsat_1_v5_gn_3_132060' => 'lsa', 'Lsat_1_v5_gn_4_68941' => 'lsa', 'Lsat_1_v5_gn_5_95580' => 'lsa', 'Lsat_1_v5_gn_7_161' => 'lsa', 'Lsat_1_v5_gn_7_7041' => 'lsa', 'Lsat_1_v5_gn_9_33481' => 'lsa', 'Lsat_1_v5_gn_9_68260' => 'lsa', 'Manes.01G073100' => 'mes', 'Manes.01G266300' => 'mes', 'Manes.02G033300' => 'mes', 'Manes.05G017900' => 'mes', 'Manes.05G046100' => 'mes', 'Manes.08G080900' => 'mes', 'Manes.10G049400' => 'mes', 'Mapoly0009s0186' => 'mpo', 'Mapoly0036s0118' => 'mpo', 'Mapoly0101s0046' => 'mpo', 'MBI04_g30218_MAGBIO' => 'mbi', 'MBI04_g35564_MAGBIO' => 'mbi', 'MBI12_g34011_MAGBIO' => 'mbi', 'MBI14_g04655_MAGBIO' => 'mbi', 'MCO07G653' => 'mco', 'MCO10G173' => 'mco', 'MD01G1087100' => 'mdo', 'MD01G1104200' => 'mdo', 'MD02G1205100' => 'mdo', 'MD04G1079200' => 'mdo', 'MD04G1131400' => 'mdo', 'MD07G1121600' => 'mdo', 'MD07G1157300' => 'mdo', 'MD07G1171000' => 'mdo', 'MD12G1144500' => 'mdo', 'Medtr1g094610' => 'mtr', 'Medtr4g021795' => 'mtr', 'Medtr4g023760' => 'mtr', 'Medtr7g118050' => 'mtr', 'MELO3C005582.2' => 'cme', 'MELO3C005989.2' => 'cme', 'MELO3C006192.2' => 'cme', 'MELO3C009248.2' => 'cme', 'MELO3C019817.2' => 'cme', 'Migut.B01625' => 'egut', 'Migut.B01915' => 'egut', 'Migut.F01721' => 'egut', 'Migut.J00314' => 'egut', 'MSTRG.20742' => 'ama', 'MSTRG.8134' => 'ama', 'Nitab4.5_0000096g0010' => 'nta', 'Nitab4.5_0000202g0030' => 'nta', 'Nitab4.5_0000216g0370' => 'nta', 'Nitab4.5_0000457g0230' => 'nta', 'Nitab4.5_0001702g0170' => 'nta', 'Nitab4.5_0003607g0010' => 'nta', 'Nitab4.5_0004917g0020' => 'nta', 'Nitab4.5_0007059g0010' => 'nta', 'Nitab4.5_0007184g0010' => 'nta', 'Nitab4.5_0007346g0020' => 'nta', 'Nn1g00410' => 'nnu', 'Nn1g01252' => 'nnu', 'Nn2g11168' => 'nnu', 'Nn2g13403' => 'nnu', 'Nn2g13760' => 'nnu', 'Nn4g26380' => 'nnu', 'Oeu000806.2' => 'oeu', 'Oeu005788.1' => 'oeu', 'Oeu006900.3' => 'oeu', 'Oeu007797.1' => 'oeu', 'Oeu011932.1' => 'oeu', 'Oeu022739.1' => 'oeu', 'Oeu037918.1' => 'oeu', 'Oeu055490.2' => 'oeu', 'Os01g0844400' => 'osa', 'Os02g0819100' => 'osa', 'Os03g0804300' => 'osa', 'Os05g0458000' => 'osa', 'Os07g0467800' => 'osa', 'Os12g0602200' => 'osa', 'Peaxi162Scf00013g03444' => 'pax', 'Peaxi162Scf00094g01120' => 'pax', 'Peaxi162Scf00191g01211' => 'pax', 'Peaxi162Scf00238g01110' => 'pax', 'Peaxi162Scf00330g00719' => 'pax', 'Peaxi162Scf00627g00018' => 'pax', 'PGR031G2686' => 'pgr', 'PGR042G0809' => 'pgr', 'PGR142G0193' => 'pgr', 'PGSC0003DMG400011066' => 'stu', 'PGSC0003DMG400012041' => 'stu', 'PGSC0003DMG400013678' => 'stu', 'PGSC0003DMG400023477' => 'stu', 'PGSC0003DMG400025956' => 'stu', 'PGSC0003DMG401019151' => 'stu', 'Phvul.006G116400' => 'pvu', 'Phvul.007G097300' => 'pvu', 'Phvul.010G015000' => 'pvu', 'Phvul.010G083900' => 'pvu', 'Potri.001G117100' => 'ptr', 'Potri.002G147300' => 'ptr', 'Potri.003G115600' => 'ptr', 'Potri.006G087400' => 'ptr', 'Potri.010G226100' => 'ptr', 'Potri.014G069200' => 'ptr', 'Potri.014G104000' => 'ptr', 'Potri.016G100200' => 'ptr', 'Pp3c10_20450' => 'ppa', 'Pp3c1_42400' => 'ppa', 'Pp3c3_24390' => 'ppa', 'Pp3c3_2860' => 'ppa', 'PRCOL_00003193' => 'pco', 'Prupe.2G144500' => 'ppe', 'Prupe.2G195700' => 'ppe', 'Prupe.2G209800' => 'ppe', 'Prupe.5G080000' => 'ppe', 'Prupe.6G257900' => 'ppe', 'Psat3g001160' => 'psa', 'Psat6g181880' => 'psa', 'Psat7g233720' => 'psa', 'PSO063G7587' => 'pso', 'PSO339G2145' => 'pso', 'PSO339G3369' => 'pso', 'PSO478G2747' => 'pso', 'PSO513G0140' => 'pso', 'PSO782G1614' => 'pso', 'PSO782G4889' => 'pso', 'PSO782G5485' => 'pso', 'PSO801G0241' => 'pso', 'QL07p048854' => 'qlo', 'QL08p046745' => 'qlo', 'QL08p052606' => 'qlo', 'QL08p053414' => 'qlo', 'QL08p054868' => 'qlo', 'RcHm_v2.0_Chr1g0350251' => 'rch', 'RcHm_v2.0_Chr1g0360851' => 'rch', 'RcHm_v2.0_Chr1g0362791' => 'rch', 'RcHm_v2.0_Chr3g0466281' => 'rch', 'RcHm_v2.0_Chr7g0201481' => 'rch', 'Rhsim01G0148600' => 'rsi', 'Rhsim05G0194400' => 'rsi', 'Rhsim07G0000700' => 'rsi', 'Rhsim07G0000800' => 'rsi', 'Rhsim07G0027900' => 'rsi', 'Rhsim09G0149500' => 'rsi', 'RhsimUnG0186900' => 'rsi', 'Sabra01G0089900' => 'sbr', 'Sabra02G0114700' => 'sbr', 'Sabra02G0116300' => 'sbr', 'Sabra03G0080100' => 'sbr', 'Sabra08G0024300' => 'sbr', 'Sabra10G0174300' => 'sbr', 'Sabra14G0048900' => 'sbr', 'Sabra14G0076500' => 'sbr', 'SalBow5G2513' => 'sbo', 'Sc01g0002300' => 'sci', 'Sc01g0004450' => 'sci', 'Sc06g0001680' => 'sci', 'Sc23g0003580' => 'sci', 'Sed0000913' => 'sed', 'Sed0001655' => 'sed', 'Sed0007745' => 'sed', 'Sed0010951' => 'sed', 'Sed0017599' => 'sed', 'Sed0021405' => 'sed', 'Sed0022810' => 'sed', 'SEGI_07099' => 'sgi', 'SEGI_11931' => 'sgi', 'SEGI_13187' => 'sgi', 'SEGI_29958' => 'sgi', 'SEGI_36351' => 'sgi', 'SGA_v2.0_scaffold126G33770' => 'sas', 'SGA_v2.0_scaffold153G37003' => 'sas', 'SGA_v2.0_scaffold2G01359' => 'sas', 'SGA_v2.0_scaffold5G03064' => 'sas', 'SGA_v2.0_scaffold95G28903' => 'sas', 'SHI12701' => 'shi', 'SHI26410' => 'shi', 'SHI38997' => 'shi', 'SHI53759' => 'shi', 'SHI53886' => 'shi', 'SHI54714' => 'shi', 'SMO011G0041' => 'smo', 'SMO146G0251' => 'smo', 'SMO160G0004' => 'smo', 'SMO174G0057' => 'smo', 'SMO244G0089' => 'smo', 'SMO296G0011' => 'smo', 'Solyc01g091280.3' => 'sly', 'Solyc05g047610.3' => 'sly', 'Solyc05g047640.3' => 'sly', 'Solyc05g055630.3' => 'sly', 'Solyc10g018160.2' => 'sly', 'Solyc10g084820.2' => 'sly', 'Solyc10g086565.2' => 'sly', 'Sopen01g037030' => 'spe', 'Sopen05g027920' => 'spe', 'Sopen05g034070' => 'spe', 'Sopen10g007260' => 'spe', 'Sopen10g034260' => 'spe', 'Sopen10g035950' => 'spe', 'Sp3g07710' => 'spa', 'Sp4g27420' => 'spa', 'Sp5g02450' => 'spa', 'Sp6g01280' => 'spa', 'Sp6g38480' => 'spa', 'Sp7g20780' => 'spa', 'TAR374G1413' => 'tar', 'TAR623G1777' => 'tar', 'TAR629G2370' => 'tar', 'TAR633G1759' => 'tar', 'TAR636G3387' => 'tar', 'THA.LOC104802447' => 'tha', 'THA.LOC104813916' => 'tha', 'THA.LOC104816423' => 'tha', 'THA.LOC104817246' => 'tha', 'THA.LOC104825895' => 'tha', 'Thecc.01G335200' => 'tca', 'Thecc.01G377400' => 'tca', 'Thecc.03G262200' => 'tca', 'Thecc.05G036800' => 'tca', 'Thecc.10G080500' => 'tca', 'Thecc.10G080800' => 'tca', 'Thhalv10001560m.g' => 'esa', 'Thhalv10006120m.g' => 'esa', 'Thhalv10014375m.g' => 'esa', 'Thhalv10021264m.g' => 'esa', 'Thhalv10028856m.g' => 'esa', 'TPR.G1914' => 'tpr', 'TPR.G4757' => 'tpr', 'TPR.G5595' => 'tpr', 'TWI14G0952' => 'twi', 'TWI14G1307' => 'twi', 'TWI38G2143' => 'twi', 'TWI59G0826' => 'twi', 'TWI77G0527' => 'twi', 'TWI81G0150' => 'twi', 'unitig_21.g21018' => 'ugi', 'unitig_26.g9725' => 'ugi', 'unitig_744.g24653' => 'ugi', 'unitig_749.g13778' => 'ugi', 'unitig_899.g15035' => 'ugi', 'vmacro04296' => 'vma', 'vmacro04852' => 'vma', 'vmacro13404' => 'vma', 'vmacro20169' => 'vma', 'vmacro21014' => 'vma', 'VMungo0331G0237' => 'vmu', 'VMungo0331G0706' => 'vmu', 'VMungo0331G1361' => 'vmu', 'VMungo0331G1489' => 'vmu', 'VMungo0540G1037' => 'vmu', 'VMungo0720G2487' => 'vmu', 'VMungo0720G2721' => 'vmu', 'Zm00001eb086860' => 'zma', 'Zm00001eb104760' => 'zma', 'Zm00001eb148220' => 'zma', 'Zm00001eb259030' => 'zma', 'Zm00001eb289590' => 'zma', 'Zm00001eb420150' => 'zma' ), 'gf_id' => 'HOM05D000968', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000968' ), 'data_identifier' => 'HOM05D000968', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000968', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p31690' => 'bna', 'A03p36040' => 'bna', 'A03p53730' => 'bna', 'A04p01410' => 'bna', 'A05p05420' => 'bna', 'A05p39630' => 'bna', 'A05p39640' => 'bna', 'A09p00970' => 'bna', 'A09p53060' => 'bna', 'A10p31890' => 'bna', 'Aa31LG10G15040' => 'aar', 'Aa31LG1G21090' => 'aar', 'Aa31LG1G26900' => 'aar', 'Aa31LG3G1820' => 'aar', 'Aa31LG5G1100' => 'aar', 'Aa31LG6G4740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2265' => 'aag', 'Actinidia07998' => 'ach', 'Actinidia11266' => 'ach', 'Actinidia12682' => 'ach', 'Actinidia26479' => 'ach', 'Actinidia31406' => 'ach', 'Actinidia32437' => 'ach', 'Actinidia38862' => 'ach', 'Ah.05g174230' => 'amhyb', 'Ah.05g179070' => 'amhyb', 'Ah.05g179090' => 'amhyb', 'Ah.12g059950' => 'amhyb', 'AL3G20480' => 'aly', 'AL4G44520' => 'aly', 'AL5G43110' => 'aly', 'AL6G13890' => 'aly', 'AL6G52620' => 'aly', 'AL7G30830' => 'aly', 'Aqoxy1G00899' => 'aox', 'Aqoxy5G04333' => 'aox', 'Aqoxy7G00641' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3IZ0NN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4EF6AW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W9P8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79GA3M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C43NQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFCU6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G95YVJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCHK29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LU1UG8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX91RN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGB4B1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8DA0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9H7JI' => 'arhy', 'AT3G09320' => 'ath', 'AT3G60800' => 'ath', 'AT4G00840' => 'ath', 'AT4G22750' => 'ath', 'AT5G04270' => 'ath', 'ATR0090G003' => 'atr', 'ATR0559G349' => 'atr', 'ATR0680G261' => 'atr', 'ATR0810G048' => 'atr', 'Atru.chr12.831' => 'acertr', 'Atru.chr5.303' => 'acertr', 'Atru.chr5.748' => 'acertr', 'Atru.chr8.1999' => 'acertr', 'Atru.chr9.1436' => 'acertr', 'AUR62004211' => 'cqu', 'AUR62004548' => 'cqu', 'AUR62013637' => 'cqu', 'AUR62022662' => 'cqu', 'AUR62025777' => 'cqu', 'AUR62042386' => 'cqu', 'BcaB01g02310' => 'bca', 'BcaB01g06062' => 'bca', 'BcaB02g08975' => 'bca', 'BcaB02g08980' => 'bca', 'BcaC01g04228' => 'bca', 'BcaC01g06830' => 'bca', 'BcaC02g10186' => 'bca', 'BcaC02g12214' => 'bca', 'BcaC04g24101' => 'bca', 'BcaC05g29520' => 'bca', 'BcaC05g29661' => 'bca', 'BcaC06g32130' => 'bca', 'BcaC06g32131' => 'bca', 'BcaC07g40601' => 'bca', 'BcaC07g42641' => 'bca', 'BcaNung01038' => 'bca', 'BcaNung01676' => 'bca', 'BcaNung02480' => 'bca', 'BcaNung07376' => 'bca', 'BolC3t16146H' => 'bol', 'BolC3t16637H' => 'bol', 'BolC4t22257H' => 'bol', 'BolC4t24728H' => 'bol', 'BolC5t34517H' => 'bol', 'BolC7t45703H' => 'bol', 'BolC8t51166H' => 'bol', 'BolC9t53038H' => 'bol', 'BolC9t60000H' => 'bol', 'BraA01t01345Z' => 'bra', 'BraA01t01346Z' => 'bra', 'BraA01t01348Z' => 'bra', 'BraA03t12347Z' => 'bra', 'BraA03t12775Z' => 'bra', 'BraA03t14439Z' => 'bra', 'BraA04t15860Z' => 'bra', 'BraA05t19511Z' => 'bra', 'BraA05t22746Z' => 'bra', 'BraA09t35767Z' => 'bra', 'BraA09t40732Z' => 'bra', 'BraA10t45233Z' => 'bra', 'C03p38720' => 'bna', 'C03p43680' => 'bna', 'C04p06350' => 'bna', 'C04p31800' => 'bna', 'C05p58680' => 'bna', 'C07p52110' => 'bna', 'C08p35760' => 'bna', 'C09p01050' => 'bna', 'C09p72600' => 'bna', 'CAN.G106.2' => 'can', 'CAN.G1482.1' => 'can', 'CAN.G324.12' => 'can', 'CAN.G388.20' => 'can', 'CAN.G412.7' => 'can', 'CAN.G694.32' => 'can', 'CAN.G92.12' => 'can', 'CANSAT11G2353' => 'cansat', 'CANSAT21G1398' => 'cansat', 'CANSAT56G2456' => 'cansat', 'CANSAT56G3031' => 'cansat', 'CANSAT56G4539' => 'cansat', 'CARHR083680' => 'chi', 'CARHR171190' => 'chi', 'CARHR209010' => 'chi', 'CARHR229680' => 'chi', 'CARHR249490' => 'chi', 'Carub.0003s0844' => 'cru', 'Carub.0005s2755' => 'cru', 'Carub.0006s0322' => 'cru', 'Carub.0006s3586' => 'cru', 'Carub.0007s1855' => 'cru', 'Ca_07808_v3' => 'car', 'Ca_09535_v3' => 'car', 'Ca_10548_v3' => 'car', 'Ca_19913_v3' => 'car', 'Ca_19916_v3' => 'car', 'Ca_19975_v3' => 'car', 'CBR_g22876' => 'cbr', 'CBR_g22879' => 'cbr', 'CBR_g38491' => 'cbr', 'CBR_g54185' => 'cbr', 'CBR_g54190' => 'cbr', 'Cc02_g11020' => 'ccan', 'Cc02_g23920' => 'ccan', 'Cc02_g39860' => 'ccan', 'Cc02_g39870' => 'ccan', 'Cc03_g06760' => 'ccan', 'Cc06_g02450' => 'ccan', 'Cc09_g09450' => 'ccan', 'CDE02G1959' => 'cde', 'CDE04G0600' => 'cde', 'CDE07G1996' => 'cde', 'CDE07G2078' => 'cde', 'CDE11G0611' => 'cde', 'Cfa001683' => 'cfa', 'Cfa001734' => 'cfa', 'Cfa001737' => 'cfa', 'Cfa003751' => 'cfa', 'Cfa012019' => 'cfa', 'Cfa017353' => 'cfa', 'Cfa017732' => 'cfa', 'Cfa022464' => 'cfa', 'Ciclev10012400m.g' => 'ccl', 'Ciclev10021242m.g' => 'ccl', 'Ciclev10021302m.g' => 'ccl', 'Ciclev10021463m.g' => 'ccl', 'Ciclev10032359m.g' => 'ccl', 'CiPaw.01G081000' => 'cil', 'CiPaw.01G262500' => 'cil', 'CiPaw.01G269800' => 'cil', 'CiPaw.02G168400' => 'cil', 'CiPaw.05G119500' => 'cil', 'CiPaw.11G147300' => 'cil', 'ClCG01G003630' => 'cla', 'ClCG05G000510' => 'cla', 'ClCG05G002300' => 'cla', 'ClCG08G007650' => 'cla', 'ClCG10G021250' => 'cla', 'COL.COLO4_06218' => 'col', 'COL.COLO4_12538' => 'col', 'COL.COLO4_14775' => 'col', 'COL.COLO4_23875' => 'col', 'Cpa.g.sc141.16' => 'cpa', 'Cpa.g.sc169.16' => 'cpa', 'Cpa.g.sc244.4' => 'cpa', 'Cpa.g.sc244.5' => 'cpa', 'Cpa.g.sc29.87' => 'cpa', 'Cpa.g.sc53.115' => 'cpa', 'Cre03.g207502' => 'cre', 'Cre06.g277000' => 'cre', 'Cre09.g394050' => 'cre', 'CsaV3_3G007680' => 'csa', 'CsaV3_3G009710' => 'csa', 'CsaV3_3G034790' => 'csa', 'CsaV3_5G003750' => 'csa', 'CsaV3_6G036620' => 'csa', 'CSS0002288' => 'camsi', 'CSS0011250' => 'camsi', 'CSS0021619' => 'camsi', 'CSS0046701' => 'camsi', 'DCAR_006420' => 'dca', 'DCAR_006865' => 'dca', 'DCAR_008558' => 'dca', 'DCAR_028754' => 'dca', 'DCAR_028755' => 'dca', 'Dinv31218' => 'din', 'Dinv32371' => 'din', 'Dinv34250' => 'din', 'Dinv37156' => 'din', 'Dinv43704' => 'din', 'Duzib093G1811' => 'dzi', 'Duzib106G1622' => 'dzi', 'Duzib114G0504' => 'dzi', 'Duzib128G0338' => 'dzi', 'Duzib128G1577' => 'dzi', 'Duzib133G0104' => 'dzi', 'Duzib133G1080' => 'dzi', 'Duzib138G0324' => 'dzi', 'Duzib138G0394' => 'dzi', 'Duzib205G0122' => 'dzi', 'Duzib268G1020' => 'dzi', 'Duzib268G1359' => 'dzi', 'ECA232G3929' => 'eca', 'ECA236G2210' => 'eca', 'ECA236G2287' => 'eca', 'ECA240G4568' => 'eca', 'ECA247G0894' => 'eca', 'EL10Ac1g00200' => 'bvu', 'EL10Ac1g00886' => 'bvu', 'EL10As1g23091' => 'bvu', 'EL10As1g23092' => 'bvu', 'Eucgr.A01284' => 'egr', 'Eucgr.A01285' => 'egr', 'Eucgr.D02456' => 'egr', 'Eucgr.E00018' => 'egr', 'Eucgr.E01439' => 'egr', 'Eucgr.G02859' => 'egr', 'FAN01G0168' => 'fan', 'FAN01G0453' => 'fan', 'FAN01G2761' => 'fan', 'FAN02G1239' => 'fan', 'FAN03G0645' => 'fan', 'FAN03G2707' => 'fan', 'FAN03G2978' => 'fan', 'FAN04G0227' => 'fan', 'FAN06G0091' => 'fan', 'FAN06G1418' => 'fan', 'FAN06G1512' => 'fan', 'FAN06G1986' => 'fan', 'FAN06G2905' => 'fan', 'FAN06G4325' => 'fan', 'FAN08G0033' => 'fan', 'FAN09G0642' => 'fan', 'FAN10G1763' => 'fan', 'FAN10G2026' => 'fan', 'FAN10G2513' => 'fan', 'FAN10G3402' => 'fan', 'FAN10G3564' => 'fan', 'FAN10G3987' => 'fan', 'FAN13G1490' => 'fan', 'FAN14G5857' => 'fan', 'FAN18G1188' => 'fan', 'FvH4_5g00750' => 'fve', 'FvH4_6g13410' => 'fve', 'FvH4_7g11740' => 'fve', 'FvH4_7g17410' => 'fve', 'FvH4_7g18860' => 'fve', 'Glyma.01G099100' => 'gma', 'Glyma.01G142300' => 'gma', 'Glyma.03G025500' => 'gma', 'Glyma.03G069700' => 'gma', 'Glyma.03G260000' => 'gma', 'Glyma.09G269800' => 'gma', 'Glyma.10G208700' => 'gma', 'Glyma.18G220400' => 'gma', 'Glyma.20G182000' => 'gma', 'Gohir.A01G221726' => 'ghi', 'Gohir.A07G134600' => 'ghi', 'Gohir.A07G146000' => 'ghi', 'Gohir.A08G173900' => 'ghi', 'Gohir.A09G194900' => 'ghi', 'Gohir.A10G204100' => 'ghi', 'Gohir.A11G080600' => 'ghi', 'Gohir.A11G327500' => 'ghi', 'Gohir.A12G101800' => 'ghi', 'Gohir.D01G211200' => 'ghi', 'Gohir.D07G139200' => 'ghi', 'Gohir.D07G152100' => 'ghi', 'Gohir.D08G192600' => 'ghi', 'Gohir.D09G189200' => 'ghi', 'Gohir.D10G212000' => 'ghi', 'Gohir.D11G085200' => 'ghi', 'Gohir.D11G346400' => 'ghi', 'Gohir.D12G104800' => 'ghi', 'Gorai.001G151300' => 'gra', 'Gorai.001G174100' => 'gra', 'Gorai.002G257000' => 'gra', 'Gorai.004G202600' => 'gra', 'Gorai.007G090900' => 'gra', 'Gorai.007G376700' => 'gra', 'Gorai.008G114100' => 'gra', 'Gorai.011G237900' => 'gra', 'GSVIVG01005450001' => 'vvi', 'GSVIVG01016232001' => 'vvi', 'GSVIVG01026157001' => 'vvi', 'GSVIVG01027419001' => 'vvi', 'GSVIVG01027631001' => 'vvi', 'GSVIVG01034143001' => 'vvi', 'HanXRQChr03g0093921' => 'han', 'HanXRQChr04g0120001' => 'han', 'HanXRQChr04g0122561' => 'han', 'HanXRQChr09g0246851' => 'han', 'HanXRQChr10g0293311' => 'han', 'HanXRQChr13g0425231' => 'han', 'HanXRQChr16g0532571' => 'han', 'Haze_09050' => 'cav', 'Haze_15715' => 'cav', 'Haze_15716' => 'cav', 'Haze_16803' => 'cav', 'Haze_16850' => 'cav', 'Hma1.2p1_0301F.1_g118655' => 'hma', 'Hma1.2p1_0309F.1_g120590' => 'hma', 'Hma1.2p1_0936F.1_g238900' => 'hma', 'Hma1.2p1_3552F.1_g336740' => 'hma', 'HPP92_003520' => 'vpl', 'HPP92_006628' => 'vpl', 'HPP92_006645' => 'vpl', 'HPP92_014669' => 'vpl', 'HPP92_015077' => 'vpl', 'Hund16742' => 'sun', 'Hund17022' => 'sun', 'Lalb_Chr02g0152131' => 'lal', 'Lalb_Chr05g0225371' => 'lal', 'Lalb_Chr07g0189841' => 'lal', 'Lalb_Chr07g0192961' => 'lal', 'Lalb_Chr12g0208221' => 'lal', 'Lalb_Chr13g0291211' => 'lal', 'Lalb_Chr13g0291781' => 'lal', 'Lalb_Chr18g0044651' => 'lal', 'Lalb_Chr21g0313731' => 'lal', 'Lj1g0022533' => 'lja', 'Lj2A18T50' => 'lonja', 'Lj2A92G93' => 'lonja', 'Lj3A965T73' => 'lonja', 'Lj3g0000673' => 'lja', 'Lj3g0002666' => 'lja', 'Lj4g0016985' => 'lja', 'Lj5g0003625' => 'lja', 'Lj7A529G36' => 'lonja', 'Lj9A569T49' => 'lonja', 'Lj9A604T63' => 'lonja', 'Lsat_1_v5_gn_3_132060' => 'lsa', 'Lsat_1_v5_gn_4_68941' => 'lsa', 'Lsat_1_v5_gn_5_95580' => 'lsa', 'Lsat_1_v5_gn_7_161' => 'lsa', 'Lsat_1_v5_gn_7_7041' => 'lsa', 'Lsat_1_v5_gn_9_33481' => 'lsa', 'Lsat_1_v5_gn_9_68260' => 'lsa', 'Manes.01G073100' => 'mes', 'Manes.01G266300' => 'mes', 'Manes.02G033300' => 'mes', 'Manes.05G017900' => 'mes', 'Manes.05G046100' => 'mes', 'Manes.08G080900' => 'mes', 'Manes.10G049400' => 'mes', 'Mapoly0009s0186' => 'mpo', 'Mapoly0036s0118' => 'mpo', 'Mapoly0101s0046' => 'mpo', 'MBI04_g30218_MAGBIO' => 'mbi', 'MBI04_g35564_MAGBIO' => 'mbi', 'MBI12_g34011_MAGBIO' => 'mbi', 'MBI14_g04655_MAGBIO' => 'mbi', 'MCO07G653' => 'mco', 'MCO10G173' => 'mco', 'MD01G1087100' => 'mdo', 'MD01G1104200' => 'mdo', 'MD02G1205100' => 'mdo', 'MD04G1079200' => 'mdo', 'MD04G1131400' => 'mdo', 'MD07G1121600' => 'mdo', 'MD07G1157300' => 'mdo', 'MD07G1171000' => 'mdo', 'MD12G1144500' => 'mdo', 'Medtr1g094610' => 'mtr', 'Medtr4g021795' => 'mtr', 'Medtr4g023760' => 'mtr', 'Medtr7g118050' => 'mtr', 'MELO3C005582.2' => 'cme', 'MELO3C005989.2' => 'cme', 'MELO3C006192.2' => 'cme', 'MELO3C009248.2' => 'cme', 'MELO3C019817.2' => 'cme', 'Migut.B01625' => 'egut', 'Migut.B01915' => 'egut', 'Migut.F01721' => 'egut', 'Migut.J00314' => 'egut', 'MSTRG.20742' => 'ama', 'MSTRG.8134' => 'ama', 'Nitab4.5_0000096g0010' => 'nta', 'Nitab4.5_0000202g0030' => 'nta', 'Nitab4.5_0000216g0370' => 'nta', 'Nitab4.5_0000457g0230' => 'nta', 'Nitab4.5_0001702g0170' => 'nta', 'Nitab4.5_0003607g0010' => 'nta', 'Nitab4.5_0004917g0020' => 'nta', 'Nitab4.5_0007059g0010' => 'nta', 'Nitab4.5_0007184g0010' => 'nta', 'Nitab4.5_0007346g0020' => 'nta', 'Nn1g00410' => 'nnu', 'Nn1g01252' => 'nnu', 'Nn2g11168' => 'nnu', 'Nn2g13403' => 'nnu', 'Nn2g13760' => 'nnu', 'Nn4g26380' => 'nnu', 'Oeu000806.2' => 'oeu', 'Oeu005788.1' => 'oeu', 'Oeu006900.3' => 'oeu', 'Oeu007797.1' => 'oeu', 'Oeu011932.1' => 'oeu', 'Oeu022739.1' => 'oeu', 'Oeu037918.1' => 'oeu', 'Oeu055490.2' => 'oeu', 'Os01g0844400' => 'osa', 'Os02g0819100' => 'osa', 'Os03g0804300' => 'osa', 'Os05g0458000' => 'osa', 'Os07g0467800' => 'osa', 'Os12g0602200' => 'osa', 'Peaxi162Scf00013g03444' => 'pax', 'Peaxi162Scf00094g01120' => 'pax', 'Peaxi162Scf00191g01211' => 'pax', 'Peaxi162Scf00238g01110' => 'pax', 'Peaxi162Scf00330g00719' => 'pax', 'Peaxi162Scf00627g00018' => 'pax', 'PGR031G2686' => 'pgr', 'PGR042G0809' => 'pgr', 'PGR142G0193' => 'pgr', 'PGSC0003DMG400011066' => 'stu', 'PGSC0003DMG400012041' => 'stu', 'PGSC0003DMG400013678' => 'stu', 'PGSC0003DMG400023477' => 'stu', 'PGSC0003DMG400025956' => 'stu', 'PGSC0003DMG401019151' => 'stu', 'Phvul.006G116400' => 'pvu', 'Phvul.007G097300' => 'pvu', 'Phvul.010G015000' => 'pvu', 'Phvul.010G083900' => 'pvu', 'Potri.001G117100' => 'ptr', 'Potri.002G147300' => 'ptr', 'Potri.003G115600' => 'ptr', 'Potri.006G087400' => 'ptr', 'Potri.010G226100' => 'ptr', 'Potri.014G069200' => 'ptr', 'Potri.014G104000' => 'ptr', 'Potri.016G100200' => 'ptr', 'Pp3c10_20450' => 'ppa', 'Pp3c1_42400' => 'ppa', 'Pp3c3_24390' => 'ppa', 'Pp3c3_2860' => 'ppa', 'PRCOL_00003193' => 'pco', 'Prupe.2G144500' => 'ppe', 'Prupe.2G195700' => 'ppe', 'Prupe.2G209800' => 'ppe', 'Prupe.5G080000' => 'ppe', 'Prupe.6G257900' => 'ppe', 'Psat3g001160' => 'psa', 'Psat6g181880' => 'psa', 'Psat7g233720' => 'psa', 'PSO063G7587' => 'pso', 'PSO339G2145' => 'pso', 'PSO339G3369' => 'pso', 'PSO478G2747' => 'pso', 'PSO513G0140' => 'pso', 'PSO782G1614' => 'pso', 'PSO782G4889' => 'pso', 'PSO782G5485' => 'pso', 'PSO801G0241' => 'pso', 'QL07p048854' => 'qlo', 'QL08p046745' => 'qlo', 'QL08p052606' => 'qlo', 'QL08p053414' => 'qlo', 'QL08p054868' => 'qlo', 'RcHm_v2.0_Chr1g0350251' => 'rch', 'RcHm_v2.0_Chr1g0360851' => 'rch', 'RcHm_v2.0_Chr1g0362791' => 'rch', 'RcHm_v2.0_Chr3g0466281' => 'rch', 'RcHm_v2.0_Chr7g0201481' => 'rch', 'Rhsim01G0148600' => 'rsi', 'Rhsim05G0194400' => 'rsi', 'Rhsim07G0000700' => 'rsi', 'Rhsim07G0000800' => 'rsi', 'Rhsim07G0027900' => 'rsi', 'Rhsim09G0149500' => 'rsi', 'RhsimUnG0186900' => 'rsi', 'Sabra01G0089900' => 'sbr', 'Sabra02G0114700' => 'sbr', 'Sabra02G0116300' => 'sbr', 'Sabra03G0080100' => 'sbr', 'Sabra08G0024300' => 'sbr', 'Sabra10G0174300' => 'sbr', 'Sabra14G0048900' => 'sbr', 'Sabra14G0076500' => 'sbr', 'SalBow5G2513' => 'sbo', 'Sc01g0002300' => 'sci', 'Sc01g0004450' => 'sci', 'Sc06g0001680' => 'sci', 'Sc23g0003580' => 'sci', 'Sed0000913' => 'sed', 'Sed0001655' => 'sed', 'Sed0007745' => 'sed', 'Sed0010951' => 'sed', 'Sed0017599' => 'sed', 'Sed0021405' => 'sed', 'Sed0022810' => 'sed', 'SEGI_07099' => 'sgi', 'SEGI_11931' => 'sgi', 'SEGI_13187' => 'sgi', 'SEGI_29958' => 'sgi', 'SEGI_36351' => 'sgi', 'SGA_v2.0_scaffold126G33770' => 'sas', 'SGA_v2.0_scaffold153G37003' => 'sas', 'SGA_v2.0_scaffold2G01359' => 'sas', 'SGA_v2.0_scaffold5G03064' => 'sas', 'SGA_v2.0_scaffold95G28903' => 'sas', 'SHI12701' => 'shi', 'SHI26410' => 'shi', 'SHI38997' => 'shi', 'SHI53759' => 'shi', 'SHI53886' => 'shi', 'SHI54714' => 'shi', 'SMO011G0041' => 'smo', 'SMO146G0251' => 'smo', 'SMO160G0004' => 'smo', 'SMO174G0057' => 'smo', 'SMO244G0089' => 'smo', 'SMO296G0011' => 'smo', 'Solyc01g091280.3' => 'sly', 'Solyc05g047610.3' => 'sly', 'Solyc05g047640.3' => 'sly', 'Solyc05g055630.3' => 'sly', 'Solyc10g018160.2' => 'sly', 'Solyc10g084820.2' => 'sly', 'Solyc10g086565.2' => 'sly', 'Sopen01g037030' => 'spe', 'Sopen05g027920' => 'spe', 'Sopen05g034070' => 'spe', 'Sopen10g007260' => 'spe', 'Sopen10g034260' => 'spe', 'Sopen10g035950' => 'spe', 'Sp3g07710' => 'spa', 'Sp4g27420' => 'spa', 'Sp5g02450' => 'spa', 'Sp6g01280' => 'spa', 'Sp6g38480' => 'spa', 'Sp7g20780' => 'spa', 'TAR374G1413' => 'tar', 'TAR623G1777' => 'tar', 'TAR629G2370' => 'tar', 'TAR633G1759' => 'tar', 'TAR636G3387' => 'tar', 'THA.LOC104802447' => 'tha', 'THA.LOC104813916' => 'tha', 'THA.LOC104816423' => 'tha', 'THA.LOC104817246' => 'tha', 'THA.LOC104825895' => 'tha', 'Thecc.01G335200' => 'tca', 'Thecc.01G377400' => 'tca', 'Thecc.03G262200' => 'tca', 'Thecc.05G036800' => 'tca', 'Thecc.10G080500' => 'tca', 'Thecc.10G080800' => 'tca', 'Thhalv10001560m.g' => 'esa', 'Thhalv10006120m.g' => 'esa', 'Thhalv10014375m.g' => 'esa', 'Thhalv10021264m.g' => 'esa', 'Thhalv10028856m.g' => 'esa', 'TPR.G1914' => 'tpr', 'TPR.G4757' => 'tpr', 'TPR.G5595' => 'tpr', 'TWI14G0952' => 'twi', 'TWI14G1307' => 'twi', 'TWI38G2143' => 'twi', 'TWI59G0826' => 'twi', 'TWI77G0527' => 'twi', 'TWI81G0150' => 'twi', 'unitig_21.g21018' => 'ugi', 'unitig_26.g9725' => 'ugi', 'unitig_744.g24653' => 'ugi', 'unitig_749.g13778' => 'ugi', 'unitig_899.g15035' => 'ugi', 'vmacro04296' => 'vma', 'vmacro04852' => 'vma', 'vmacro13404' => 'vma', 'vmacro20169' => 'vma', 'vmacro21014' => 'vma', 'VMungo0331G0237' => 'vmu', 'VMungo0331G0706' => 'vmu', 'VMungo0331G1361' => 'vmu', 'VMungo0331G1489' => 'vmu', 'VMungo0540G1037' => 'vmu', 'VMungo0720G2487' => 'vmu', 'VMungo0720G2721' => 'vmu', 'Zm00001eb086860' => 'zma', 'Zm00001eb104760' => 'zma', 'Zm00001eb148220' => 'zma', 'Zm00001eb259030' => 'zma', 'Zm00001eb289590' => 'zma', 'Zm00001eb420150' => 'zma' ) $gf_id = 'HOM05D000968' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000968' ) $data_identifier = 'HOM05D000968' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 19, 'bol' => (int) 9, 'bra' => (int) 12, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 5, 'ccan' => (int) 7, 'cde' => (int) 5, 'cfa' => (int) 8, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 4, 'dca' => (int) 5, 'din' => (int) 5, 'dzi' => (int) 12, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 25, 'fve' => (int) 5, 'gma' => (int) 9, 'ghi' => (int) 18, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 7, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 5, 'sun' => (int) 2, 'lal' => (int) 9, 'lja' => (int) 5, 'lonja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 9, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 2, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 3, 'stu' => (int) 6, 'pvu' => (int) 4, 'ptr' => (int) 8, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 3, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 1, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 5, 'sas' => (int) 5, 'shi' => (int) 6, 'smo' => (int) 6, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 3, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420150' $species_info = array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ) $local_species = 'egr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000968', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p31690' => 'bna', 'A03p36040' => 'bna', 'A03p53730' => 'bna', 'A04p01410' => 'bna', 'A05p05420' => 'bna', 'A05p39630' => 'bna', 'A05p39640' => 'bna', 'A09p00970' => 'bna', 'A09p53060' => 'bna', 'A10p31890' => 'bna', 'Aa31LG10G15040' => 'aar', 'Aa31LG1G21090' => 'aar', 'Aa31LG1G26900' => 'aar', 'Aa31LG3G1820' => 'aar', 'Aa31LG5G1100' => 'aar', 'Aa31LG6G4740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2265' => 'aag', 'Actinidia07998' => 'ach', 'Actinidia11266' => 'ach', 'Actinidia12682' => 'ach', 'Actinidia26479' => 'ach', 'Actinidia31406' => 'ach', 'Actinidia32437' => 'ach', 'Actinidia38862' => 'ach', 'Ah.05g174230' => 'amhyb', 'Ah.05g179070' => 'amhyb', 'Ah.05g179090' => 'amhyb', 'Ah.12g059950' => 'amhyb', 'AL3G20480' => 'aly', 'AL4G44520' => 'aly', 'AL5G43110' => 'aly', 'AL6G13890' => 'aly', 'AL6G52620' => 'aly', 'AL7G30830' => 'aly', 'Aqoxy1G00899' => 'aox', 'Aqoxy5G04333' => 'aox', 'Aqoxy7G00641' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3IZ0NN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4EF6AW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W9P8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79GA3M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C43NQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFCU6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G95YVJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCHK29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LU1UG8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX91RN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGB4B1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8DA0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9H7JI' => 'arhy', 'AT3G09320' => 'ath', 'AT3G60800' => 'ath', 'AT4G00840' => 'ath', 'AT4G22750' => 'ath', 'AT5G04270' => 'ath', 'ATR0090G003' => 'atr', 'ATR0559G349' => 'atr', 'ATR0680G261' => 'atr', 'ATR0810G048' => 'atr', 'Atru.chr12.831' => 'acertr', 'Atru.chr5.303' => 'acertr', 'Atru.chr5.748' => 'acertr', 'Atru.chr8.1999' => 'acertr', 'Atru.chr9.1436' => 'acertr', 'AUR62004211' => 'cqu', 'AUR62004548' => 'cqu', 'AUR62013637' => 'cqu', 'AUR62022662' => 'cqu', 'AUR62025777' => 'cqu', 'AUR62042386' => 'cqu', 'BcaB01g02310' => 'bca', 'BcaB01g06062' => 'bca', 'BcaB02g08975' => 'bca', 'BcaB02g08980' => 'bca', 'BcaC01g04228' => 'bca', 'BcaC01g06830' => 'bca', 'BcaC02g10186' => 'bca', 'BcaC02g12214' => 'bca', 'BcaC04g24101' => 'bca', 'BcaC05g29520' => 'bca', 'BcaC05g29661' => 'bca', 'BcaC06g32130' => 'bca', 'BcaC06g32131' => 'bca', 'BcaC07g40601' => 'bca', 'BcaC07g42641' => 'bca', 'BcaNung01038' => 'bca', 'BcaNung01676' => 'bca', 'BcaNung02480' => 'bca', 'BcaNung07376' => 'bca', 'BolC3t16146H' => 'bol', 'BolC3t16637H' => 'bol', 'BolC4t22257H' => 'bol', 'BolC4t24728H' => 'bol', 'BolC5t34517H' => 'bol', 'BolC7t45703H' => 'bol', 'BolC8t51166H' => 'bol', 'BolC9t53038H' => 'bol', 'BolC9t60000H' => 'bol', 'BraA01t01345Z' => 'bra', 'BraA01t01346Z' => 'bra', 'BraA01t01348Z' => 'bra', 'BraA03t12347Z' => 'bra', 'BraA03t12775Z' => 'bra', 'BraA03t14439Z' => 'bra', 'BraA04t15860Z' => 'bra', 'BraA05t19511Z' => 'bra', 'BraA05t22746Z' => 'bra', 'BraA09t35767Z' => 'bra', 'BraA09t40732Z' => 'bra', 'BraA10t45233Z' => 'bra', 'C03p38720' => 'bna', 'C03p43680' => 'bna', 'C04p06350' => 'bna', 'C04p31800' => 'bna', 'C05p58680' => 'bna', 'C07p52110' => 'bna', 'C08p35760' => 'bna', 'C09p01050' => 'bna', 'C09p72600' => 'bna', 'CAN.G106.2' => 'can', 'CAN.G1482.1' => 'can', 'CAN.G324.12' => 'can', 'CAN.G388.20' => 'can', 'CAN.G412.7' => 'can', 'CAN.G694.32' => 'can', 'CAN.G92.12' => 'can', 'CANSAT11G2353' => 'cansat', 'CANSAT21G1398' => 'cansat', 'CANSAT56G2456' => 'cansat', 'CANSAT56G3031' => 'cansat', 'CANSAT56G4539' => 'cansat', 'CARHR083680' => 'chi', 'CARHR171190' => 'chi', 'CARHR209010' => 'chi', 'CARHR229680' => 'chi', 'CARHR249490' => 'chi', 'Carub.0003s0844' => 'cru', 'Carub.0005s2755' => 'cru', 'Carub.0006s0322' => 'cru', 'Carub.0006s3586' => 'cru', 'Carub.0007s1855' => 'cru', 'Ca_07808_v3' => 'car', 'Ca_09535_v3' => 'car', 'Ca_10548_v3' => 'car', 'Ca_19913_v3' => 'car', 'Ca_19916_v3' => 'car', 'Ca_19975_v3' => 'car', 'CBR_g22876' => 'cbr', 'CBR_g22879' => 'cbr', 'CBR_g38491' => 'cbr', 'CBR_g54185' => 'cbr', 'CBR_g54190' => 'cbr', 'Cc02_g11020' => 'ccan', 'Cc02_g23920' => 'ccan', 'Cc02_g39860' => 'ccan', 'Cc02_g39870' => 'ccan', 'Cc03_g06760' => 'ccan', 'Cc06_g02450' => 'ccan', 'Cc09_g09450' => 'ccan', 'CDE02G1959' => 'cde', 'CDE04G0600' => 'cde', 'CDE07G1996' => 'cde', 'CDE07G2078' => 'cde', 'CDE11G0611' => 'cde', 'Cfa001683' => 'cfa', 'Cfa001734' => 'cfa', 'Cfa001737' => 'cfa', 'Cfa003751' => 'cfa', 'Cfa012019' => 'cfa', 'Cfa017353' => 'cfa', 'Cfa017732' => 'cfa', 'Cfa022464' => 'cfa', 'Ciclev10012400m.g' => 'ccl', 'Ciclev10021242m.g' => 'ccl', 'Ciclev10021302m.g' => 'ccl', 'Ciclev10021463m.g' => 'ccl', 'Ciclev10032359m.g' => 'ccl', 'CiPaw.01G081000' => 'cil', 'CiPaw.01G262500' => 'cil', 'CiPaw.01G269800' => 'cil', 'CiPaw.02G168400' => 'cil', 'CiPaw.05G119500' => 'cil', 'CiPaw.11G147300' => 'cil', 'ClCG01G003630' => 'cla', 'ClCG05G000510' => 'cla', 'ClCG05G002300' => 'cla', 'ClCG08G007650' => 'cla', 'ClCG10G021250' => 'cla', 'COL.COLO4_06218' => 'col', 'COL.COLO4_12538' => 'col', 'COL.COLO4_14775' => 'col', 'COL.COLO4_23875' => 'col', 'Cpa.g.sc141.16' => 'cpa', 'Cpa.g.sc169.16' => 'cpa', 'Cpa.g.sc244.4' => 'cpa', 'Cpa.g.sc244.5' => 'cpa', 'Cpa.g.sc29.87' => 'cpa', 'Cpa.g.sc53.115' => 'cpa', 'Cre03.g207502' => 'cre', 'Cre06.g277000' => 'cre', 'Cre09.g394050' => 'cre', 'CsaV3_3G007680' => 'csa', 'CsaV3_3G009710' => 'csa', 'CsaV3_3G034790' => 'csa', 'CsaV3_5G003750' => 'csa', 'CsaV3_6G036620' => 'csa', 'CSS0002288' => 'camsi', 'CSS0011250' => 'camsi', 'CSS0021619' => 'camsi', 'CSS0046701' => 'camsi', 'DCAR_006420' => 'dca', 'DCAR_006865' => 'dca', 'DCAR_008558' => 'dca', 'DCAR_028754' => 'dca', 'DCAR_028755' => 'dca', 'Dinv31218' => 'din', 'Dinv32371' => 'din', 'Dinv34250' => 'din', 'Dinv37156' => 'din', 'Dinv43704' => 'din', 'Duzib093G1811' => 'dzi', 'Duzib106G1622' => 'dzi', 'Duzib114G0504' => 'dzi', 'Duzib128G0338' => 'dzi', 'Duzib128G1577' => 'dzi', 'Duzib133G0104' => 'dzi', 'Duzib133G1080' => 'dzi', 'Duzib138G0324' => 'dzi', 'Duzib138G0394' => 'dzi', 'Duzib205G0122' => 'dzi', 'Duzib268G1020' => 'dzi', 'Duzib268G1359' => 'dzi', 'ECA232G3929' => 'eca', 'ECA236G2210' => 'eca', 'ECA236G2287' => 'eca', 'ECA240G4568' => 'eca', 'ECA247G0894' => 'eca', 'EL10Ac1g00200' => 'bvu', 'EL10Ac1g00886' => 'bvu', 'EL10As1g23091' => 'bvu', 'EL10As1g23092' => 'bvu', 'Eucgr.A01284' => 'egr', 'Eucgr.A01285' => 'egr', 'Eucgr.D02456' => 'egr', 'Eucgr.E00018' => 'egr', 'Eucgr.E01439' => 'egr', 'Eucgr.G02859' => 'egr', 'FAN01G0168' => 'fan', 'FAN01G0453' => 'fan', 'FAN01G2761' => 'fan', 'FAN02G1239' => 'fan', 'FAN03G0645' => 'fan', 'FAN03G2707' => 'fan', 'FAN03G2978' => 'fan', 'FAN04G0227' => 'fan', 'FAN06G0091' => 'fan', 'FAN06G1418' => 'fan', 'FAN06G1512' => 'fan', 'FAN06G1986' => 'fan', 'FAN06G2905' => 'fan', 'FAN06G4325' => 'fan', 'FAN08G0033' => 'fan', 'FAN09G0642' => 'fan', 'FAN10G1763' => 'fan', 'FAN10G2026' => 'fan', 'FAN10G2513' => 'fan', 'FAN10G3402' => 'fan', 'FAN10G3564' => 'fan', 'FAN10G3987' => 'fan', 'FAN13G1490' => 'fan', 'FAN14G5857' => 'fan', 'FAN18G1188' => 'fan', 'FvH4_5g00750' => 'fve', 'FvH4_6g13410' => 'fve', 'FvH4_7g11740' => 'fve', 'FvH4_7g17410' => 'fve', 'FvH4_7g18860' => 'fve', 'Glyma.01G099100' => 'gma', 'Glyma.01G142300' => 'gma', 'Glyma.03G025500' => 'gma', 'Glyma.03G069700' => 'gma', 'Glyma.03G260000' => 'gma', 'Glyma.09G269800' => 'gma', 'Glyma.10G208700' => 'gma', 'Glyma.18G220400' => 'gma', 'Glyma.20G182000' => 'gma', 'Gohir.A01G221726' => 'ghi', 'Gohir.A07G134600' => 'ghi', 'Gohir.A07G146000' => 'ghi', 'Gohir.A08G173900' => 'ghi', 'Gohir.A09G194900' => 'ghi', 'Gohir.A10G204100' => 'ghi', 'Gohir.A11G080600' => 'ghi', 'Gohir.A11G327500' => 'ghi', 'Gohir.A12G101800' => 'ghi', 'Gohir.D01G211200' => 'ghi', 'Gohir.D07G139200' => 'ghi', 'Gohir.D07G152100' => 'ghi', 'Gohir.D08G192600' => 'ghi', 'Gohir.D09G189200' => 'ghi', 'Gohir.D10G212000' => 'ghi', 'Gohir.D11G085200' => 'ghi', 'Gohir.D11G346400' => 'ghi', 'Gohir.D12G104800' => 'ghi', 'Gorai.001G151300' => 'gra', 'Gorai.001G174100' => 'gra', 'Gorai.002G257000' => 'gra', 'Gorai.004G202600' => 'gra', 'Gorai.007G090900' => 'gra', 'Gorai.007G376700' => 'gra', 'Gorai.008G114100' => 'gra', 'Gorai.011G237900' => 'gra', 'GSVIVG01005450001' => 'vvi', 'GSVIVG01016232001' => 'vvi', 'GSVIVG01026157001' => 'vvi', 'GSVIVG01027419001' => 'vvi', 'GSVIVG01027631001' => 'vvi', 'GSVIVG01034143001' => 'vvi', 'HanXRQChr03g0093921' => 'han', 'HanXRQChr04g0120001' => 'han', 'HanXRQChr04g0122561' => 'han', 'HanXRQChr09g0246851' => 'han', 'HanXRQChr10g0293311' => 'han', 'HanXRQChr13g0425231' => 'han', 'HanXRQChr16g0532571' => 'han', 'Haze_09050' => 'cav', 'Haze_15715' => 'cav', 'Haze_15716' => 'cav', 'Haze_16803' => 'cav', 'Haze_16850' => 'cav', 'Hma1.2p1_0301F.1_g118655' => 'hma', 'Hma1.2p1_0309F.1_g120590' => 'hma', 'Hma1.2p1_0936F.1_g238900' => 'hma', 'Hma1.2p1_3552F.1_g336740' => 'hma', 'HPP92_003520' => 'vpl', 'HPP92_006628' => 'vpl', 'HPP92_006645' => 'vpl', 'HPP92_014669' => 'vpl', 'HPP92_015077' => 'vpl', 'Hund16742' => 'sun', 'Hund17022' => 'sun', 'Lalb_Chr02g0152131' => 'lal', 'Lalb_Chr05g0225371' => 'lal', 'Lalb_Chr07g0189841' => 'lal', 'Lalb_Chr07g0192961' => 'lal', 'Lalb_Chr12g0208221' => 'lal', 'Lalb_Chr13g0291211' => 'lal', 'Lalb_Chr13g0291781' => 'lal', 'Lalb_Chr18g0044651' => 'lal', 'Lalb_Chr21g0313731' => 'lal', 'Lj1g0022533' => 'lja', 'Lj2A18T50' => 'lonja', 'Lj2A92G93' => 'lonja', 'Lj3A965T73' => 'lonja', 'Lj3g0000673' => 'lja', 'Lj3g0002666' => 'lja', 'Lj4g0016985' => 'lja', 'Lj5g0003625' => 'lja', 'Lj7A529G36' => 'lonja', 'Lj9A569T49' => 'lonja', 'Lj9A604T63' => 'lonja', 'Lsat_1_v5_gn_3_132060' => 'lsa', 'Lsat_1_v5_gn_4_68941' => 'lsa', 'Lsat_1_v5_gn_5_95580' => 'lsa', 'Lsat_1_v5_gn_7_161' => 'lsa', 'Lsat_1_v5_gn_7_7041' => 'lsa', 'Lsat_1_v5_gn_9_33481' => 'lsa', 'Lsat_1_v5_gn_9_68260' => 'lsa', 'Manes.01G073100' => 'mes', 'Manes.01G266300' => 'mes', 'Manes.02G033300' => 'mes', 'Manes.05G017900' => 'mes', 'Manes.05G046100' => 'mes', 'Manes.08G080900' => 'mes', 'Manes.10G049400' => 'mes', 'Mapoly0009s0186' => 'mpo', 'Mapoly0036s0118' => 'mpo', 'Mapoly0101s0046' => 'mpo', 'MBI04_g30218_MAGBIO' => 'mbi', 'MBI04_g35564_MAGBIO' => 'mbi', 'MBI12_g34011_MAGBIO' => 'mbi', 'MBI14_g04655_MAGBIO' => 'mbi', 'MCO07G653' => 'mco', 'MCO10G173' => 'mco', 'MD01G1087100' => 'mdo', 'MD01G1104200' => 'mdo', 'MD02G1205100' => 'mdo', 'MD04G1079200' => 'mdo', 'MD04G1131400' => 'mdo', 'MD07G1121600' => 'mdo', 'MD07G1157300' => 'mdo', 'MD07G1171000' => 'mdo', 'MD12G1144500' => 'mdo', 'Medtr1g094610' => 'mtr', 'Medtr4g021795' => 'mtr', 'Medtr4g023760' => 'mtr', 'Medtr7g118050' => 'mtr', 'MELO3C005582.2' => 'cme', 'MELO3C005989.2' => 'cme', 'MELO3C006192.2' => 'cme', 'MELO3C009248.2' => 'cme', 'MELO3C019817.2' => 'cme', 'Migut.B01625' => 'egut', 'Migut.B01915' => 'egut', 'Migut.F01721' => 'egut', 'Migut.J00314' => 'egut', 'MSTRG.20742' => 'ama', 'MSTRG.8134' => 'ama', 'Nitab4.5_0000096g0010' => 'nta', 'Nitab4.5_0000202g0030' => 'nta', 'Nitab4.5_0000216g0370' => 'nta', 'Nitab4.5_0000457g0230' => 'nta', 'Nitab4.5_0001702g0170' => 'nta', 'Nitab4.5_0003607g0010' => 'nta', 'Nitab4.5_0004917g0020' => 'nta', 'Nitab4.5_0007059g0010' => 'nta', 'Nitab4.5_0007184g0010' => 'nta', 'Nitab4.5_0007346g0020' => 'nta', 'Nn1g00410' => 'nnu', 'Nn1g01252' => 'nnu', 'Nn2g11168' => 'nnu', 'Nn2g13403' => 'nnu', 'Nn2g13760' => 'nnu', 'Nn4g26380' => 'nnu', 'Oeu000806.2' => 'oeu', 'Oeu005788.1' => 'oeu', 'Oeu006900.3' => 'oeu', 'Oeu007797.1' => 'oeu', 'Oeu011932.1' => 'oeu', 'Oeu022739.1' => 'oeu', 'Oeu037918.1' => 'oeu', 'Oeu055490.2' => 'oeu', 'Os01g0844400' => 'osa', 'Os02g0819100' => 'osa', 'Os03g0804300' => 'osa', 'Os05g0458000' => 'osa', 'Os07g0467800' => 'osa', 'Os12g0602200' => 'osa', 'Peaxi162Scf00013g03444' => 'pax', 'Peaxi162Scf00094g01120' => 'pax', 'Peaxi162Scf00191g01211' => 'pax', 'Peaxi162Scf00238g01110' => 'pax', 'Peaxi162Scf00330g00719' => 'pax', 'Peaxi162Scf00627g00018' => 'pax', 'PGR031G2686' => 'pgr', 'PGR042G0809' => 'pgr', 'PGR142G0193' => 'pgr', 'PGSC0003DMG400011066' => 'stu', 'PGSC0003DMG400012041' => 'stu', 'PGSC0003DMG400013678' => 'stu', 'PGSC0003DMG400023477' => 'stu', 'PGSC0003DMG400025956' => 'stu', 'PGSC0003DMG401019151' => 'stu', 'Phvul.006G116400' => 'pvu', 'Phvul.007G097300' => 'pvu', 'Phvul.010G015000' => 'pvu', 'Phvul.010G083900' => 'pvu', 'Potri.001G117100' => 'ptr', 'Potri.002G147300' => 'ptr', 'Potri.003G115600' => 'ptr', 'Potri.006G087400' => 'ptr', 'Potri.010G226100' => 'ptr', 'Potri.014G069200' => 'ptr', 'Potri.014G104000' => 'ptr', 'Potri.016G100200' => 'ptr', 'Pp3c10_20450' => 'ppa', 'Pp3c1_42400' => 'ppa', 'Pp3c3_24390' => 'ppa', 'Pp3c3_2860' => 'ppa', 'PRCOL_00003193' => 'pco', 'Prupe.2G144500' => 'ppe', 'Prupe.2G195700' => 'ppe', 'Prupe.2G209800' => 'ppe', 'Prupe.5G080000' => 'ppe', 'Prupe.6G257900' => 'ppe', 'Psat3g001160' => 'psa', 'Psat6g181880' => 'psa', 'Psat7g233720' => 'psa', 'PSO063G7587' => 'pso', 'PSO339G2145' => 'pso', 'PSO339G3369' => 'pso', 'PSO478G2747' => 'pso', 'PSO513G0140' => 'pso', 'PSO782G1614' => 'pso', 'PSO782G4889' => 'pso', 'PSO782G5485' => 'pso', 'PSO801G0241' => 'pso', 'QL07p048854' => 'qlo', 'QL08p046745' => 'qlo', 'QL08p052606' => 'qlo', 'QL08p053414' => 'qlo', 'QL08p054868' => 'qlo', 'RcHm_v2.0_Chr1g0350251' => 'rch', 'RcHm_v2.0_Chr1g0360851' => 'rch', 'RcHm_v2.0_Chr1g0362791' => 'rch', 'RcHm_v2.0_Chr3g0466281' => 'rch', 'RcHm_v2.0_Chr7g0201481' => 'rch', 'Rhsim01G0148600' => 'rsi', 'Rhsim05G0194400' => 'rsi', 'Rhsim07G0000700' => 'rsi', 'Rhsim07G0000800' => 'rsi', 'Rhsim07G0027900' => 'rsi', 'Rhsim09G0149500' => 'rsi', 'RhsimUnG0186900' => 'rsi', 'Sabra01G0089900' => 'sbr', 'Sabra02G0114700' => 'sbr', 'Sabra02G0116300' => 'sbr', 'Sabra03G0080100' => 'sbr', 'Sabra08G0024300' => 'sbr', 'Sabra10G0174300' => 'sbr', 'Sabra14G0048900' => 'sbr', 'Sabra14G0076500' => 'sbr', 'SalBow5G2513' => 'sbo', 'Sc01g0002300' => 'sci', 'Sc01g0004450' => 'sci', 'Sc06g0001680' => 'sci', 'Sc23g0003580' => 'sci', 'Sed0000913' => 'sed', 'Sed0001655' => 'sed', 'Sed0007745' => 'sed', 'Sed0010951' => 'sed', 'Sed0017599' => 'sed', 'Sed0021405' => 'sed', 'Sed0022810' => 'sed', 'SEGI_07099' => 'sgi', 'SEGI_11931' => 'sgi', 'SEGI_13187' => 'sgi', 'SEGI_29958' => 'sgi', 'SEGI_36351' => 'sgi', 'SGA_v2.0_scaffold126G33770' => 'sas', 'SGA_v2.0_scaffold153G37003' => 'sas', 'SGA_v2.0_scaffold2G01359' => 'sas', 'SGA_v2.0_scaffold5G03064' => 'sas', 'SGA_v2.0_scaffold95G28903' => 'sas', 'SHI12701' => 'shi', 'SHI26410' => 'shi', 'SHI38997' => 'shi', 'SHI53759' => 'shi', 'SHI53886' => 'shi', 'SHI54714' => 'shi', 'SMO011G0041' => 'smo', 'SMO146G0251' => 'smo', 'SMO160G0004' => 'smo', 'SMO174G0057' => 'smo', 'SMO244G0089' => 'smo', 'SMO296G0011' => 'smo', 'Solyc01g091280.3' => 'sly', 'Solyc05g047610.3' => 'sly', 'Solyc05g047640.3' => 'sly', 'Solyc05g055630.3' => 'sly', 'Solyc10g018160.2' => 'sly', 'Solyc10g084820.2' => 'sly', 'Solyc10g086565.2' => 'sly', 'Sopen01g037030' => 'spe', 'Sopen05g027920' => 'spe', 'Sopen05g034070' => 'spe', 'Sopen10g007260' => 'spe', 'Sopen10g034260' => 'spe', 'Sopen10g035950' => 'spe', 'Sp3g07710' => 'spa', 'Sp4g27420' => 'spa', 'Sp5g02450' => 'spa', 'Sp6g01280' => 'spa', 'Sp6g38480' => 'spa', 'Sp7g20780' => 'spa', 'TAR374G1413' => 'tar', 'TAR623G1777' => 'tar', 'TAR629G2370' => 'tar', 'TAR633G1759' => 'tar', 'TAR636G3387' => 'tar', 'THA.LOC104802447' => 'tha', 'THA.LOC104813916' => 'tha', 'THA.LOC104816423' => 'tha', 'THA.LOC104817246' => 'tha', 'THA.LOC104825895' => 'tha', 'Thecc.01G335200' => 'tca', 'Thecc.01G377400' => 'tca', 'Thecc.03G262200' => 'tca', 'Thecc.05G036800' => 'tca', 'Thecc.10G080500' => 'tca', 'Thecc.10G080800' => 'tca', 'Thhalv10001560m.g' => 'esa', 'Thhalv10006120m.g' => 'esa', 'Thhalv10014375m.g' => 'esa', 'Thhalv10021264m.g' => 'esa', 'Thhalv10028856m.g' => 'esa', 'TPR.G1914' => 'tpr', 'TPR.G4757' => 'tpr', 'TPR.G5595' => 'tpr', 'TWI14G0952' => 'twi', 'TWI14G1307' => 'twi', 'TWI38G2143' => 'twi', 'TWI59G0826' => 'twi', 'TWI77G0527' => 'twi', 'TWI81G0150' => 'twi', 'unitig_21.g21018' => 'ugi', 'unitig_26.g9725' => 'ugi', 'unitig_744.g24653' => 'ugi', 'unitig_749.g13778' => 'ugi', 'unitig_899.g15035' => 'ugi', 'vmacro04296' => 'vma', 'vmacro04852' => 'vma', 'vmacro13404' => 'vma', 'vmacro20169' => 'vma', 'vmacro21014' => 'vma', 'VMungo0331G0237' => 'vmu', 'VMungo0331G0706' => 'vmu', 'VMungo0331G1361' => 'vmu', 'VMungo0331G1489' => 'vmu', 'VMungo0540G1037' => 'vmu', 'VMungo0720G2487' => 'vmu', 'VMungo0720G2721' => 'vmu', 'Zm00001eb086860' => 'zma', 'Zm00001eb104760' => 'zma', 'Zm00001eb148220' => 'zma', 'Zm00001eb259030' => 'zma', 'Zm00001eb289590' => 'zma', 'Zm00001eb420150' => 'zma' ), 'gf_id' => 'HOM05D000968', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000968' ), 'data_identifier' => 'HOM05D000968', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000968', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p31690' => 'bna', 'A03p36040' => 'bna', 'A03p53730' => 'bna', 'A04p01410' => 'bna', 'A05p05420' => 'bna', 'A05p39630' => 'bna', 'A05p39640' => 'bna', 'A09p00970' => 'bna', 'A09p53060' => 'bna', 'A10p31890' => 'bna', 'Aa31LG10G15040' => 'aar', 'Aa31LG1G21090' => 'aar', 'Aa31LG1G26900' => 'aar', 'Aa31LG3G1820' => 'aar', 'Aa31LG5G1100' => 'aar', 'Aa31LG6G4740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2265' => 'aag', 'Actinidia07998' => 'ach', 'Actinidia11266' => 'ach', 'Actinidia12682' => 'ach', 'Actinidia26479' => 'ach', 'Actinidia31406' => 'ach', 'Actinidia32437' => 'ach', 'Actinidia38862' => 'ach', 'Ah.05g174230' => 'amhyb', 'Ah.05g179070' => 'amhyb', 'Ah.05g179090' => 'amhyb', 'Ah.12g059950' => 'amhyb', 'AL3G20480' => 'aly', 'AL4G44520' => 'aly', 'AL5G43110' => 'aly', 'AL6G13890' => 'aly', 'AL6G52620' => 'aly', 'AL7G30830' => 'aly', 'Aqoxy1G00899' => 'aox', 'Aqoxy5G04333' => 'aox', 'Aqoxy7G00641' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3IZ0NN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4EF6AW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W9P8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79GA3M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C43NQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFCU6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G95YVJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCHK29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LU1UG8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX91RN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGB4B1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8DA0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9H7JI' => 'arhy', 'AT3G09320' => 'ath', 'AT3G60800' => 'ath', 'AT4G00840' => 'ath', 'AT4G22750' => 'ath', 'AT5G04270' => 'ath', 'ATR0090G003' => 'atr', 'ATR0559G349' => 'atr', 'ATR0680G261' => 'atr', 'ATR0810G048' => 'atr', 'Atru.chr12.831' => 'acertr', 'Atru.chr5.303' => 'acertr', 'Atru.chr5.748' => 'acertr', 'Atru.chr8.1999' => 'acertr', 'Atru.chr9.1436' => 'acertr', 'AUR62004211' => 'cqu', 'AUR62004548' => 'cqu', 'AUR62013637' => 'cqu', 'AUR62022662' => 'cqu', 'AUR62025777' => 'cqu', 'AUR62042386' => 'cqu', 'BcaB01g02310' => 'bca', 'BcaB01g06062' => 'bca', 'BcaB02g08975' => 'bca', 'BcaB02g08980' => 'bca', 'BcaC01g04228' => 'bca', 'BcaC01g06830' => 'bca', 'BcaC02g10186' => 'bca', 'BcaC02g12214' => 'bca', 'BcaC04g24101' => 'bca', 'BcaC05g29520' => 'bca', 'BcaC05g29661' => 'bca', 'BcaC06g32130' => 'bca', 'BcaC06g32131' => 'bca', 'BcaC07g40601' => 'bca', 'BcaC07g42641' => 'bca', 'BcaNung01038' => 'bca', 'BcaNung01676' => 'bca', 'BcaNung02480' => 'bca', 'BcaNung07376' => 'bca', 'BolC3t16146H' => 'bol', 'BolC3t16637H' => 'bol', 'BolC4t22257H' => 'bol', 'BolC4t24728H' => 'bol', 'BolC5t34517H' => 'bol', 'BolC7t45703H' => 'bol', 'BolC8t51166H' => 'bol', 'BolC9t53038H' => 'bol', 'BolC9t60000H' => 'bol', 'BraA01t01345Z' => 'bra', 'BraA01t01346Z' => 'bra', 'BraA01t01348Z' => 'bra', 'BraA03t12347Z' => 'bra', 'BraA03t12775Z' => 'bra', 'BraA03t14439Z' => 'bra', 'BraA04t15860Z' => 'bra', 'BraA05t19511Z' => 'bra', 'BraA05t22746Z' => 'bra', 'BraA09t35767Z' => 'bra', 'BraA09t40732Z' => 'bra', 'BraA10t45233Z' => 'bra', 'C03p38720' => 'bna', 'C03p43680' => 'bna', 'C04p06350' => 'bna', 'C04p31800' => 'bna', 'C05p58680' => 'bna', 'C07p52110' => 'bna', 'C08p35760' => 'bna', 'C09p01050' => 'bna', 'C09p72600' => 'bna', 'CAN.G106.2' => 'can', 'CAN.G1482.1' => 'can', 'CAN.G324.12' => 'can', 'CAN.G388.20' => 'can', 'CAN.G412.7' => 'can', 'CAN.G694.32' => 'can', 'CAN.G92.12' => 'can', 'CANSAT11G2353' => 'cansat', 'CANSAT21G1398' => 'cansat', 'CANSAT56G2456' => 'cansat', 'CANSAT56G3031' => 'cansat', 'CANSAT56G4539' => 'cansat', 'CARHR083680' => 'chi', 'CARHR171190' => 'chi', 'CARHR209010' => 'chi', 'CARHR229680' => 'chi', 'CARHR249490' => 'chi', 'Carub.0003s0844' => 'cru', 'Carub.0005s2755' => 'cru', 'Carub.0006s0322' => 'cru', 'Carub.0006s3586' => 'cru', 'Carub.0007s1855' => 'cru', 'Ca_07808_v3' => 'car', 'Ca_09535_v3' => 'car', 'Ca_10548_v3' => 'car', 'Ca_19913_v3' => 'car', 'Ca_19916_v3' => 'car', 'Ca_19975_v3' => 'car', 'CBR_g22876' => 'cbr', 'CBR_g22879' => 'cbr', 'CBR_g38491' => 'cbr', 'CBR_g54185' => 'cbr', 'CBR_g54190' => 'cbr', 'Cc02_g11020' => 'ccan', 'Cc02_g23920' => 'ccan', 'Cc02_g39860' => 'ccan', 'Cc02_g39870' => 'ccan', 'Cc03_g06760' => 'ccan', 'Cc06_g02450' => 'ccan', 'Cc09_g09450' => 'ccan', 'CDE02G1959' => 'cde', 'CDE04G0600' => 'cde', 'CDE07G1996' => 'cde', 'CDE07G2078' => 'cde', 'CDE11G0611' => 'cde', 'Cfa001683' => 'cfa', 'Cfa001734' => 'cfa', 'Cfa001737' => 'cfa', 'Cfa003751' => 'cfa', 'Cfa012019' => 'cfa', 'Cfa017353' => 'cfa', 'Cfa017732' => 'cfa', 'Cfa022464' => 'cfa', 'Ciclev10012400m.g' => 'ccl', 'Ciclev10021242m.g' => 'ccl', 'Ciclev10021302m.g' => 'ccl', 'Ciclev10021463m.g' => 'ccl', 'Ciclev10032359m.g' => 'ccl', 'CiPaw.01G081000' => 'cil', 'CiPaw.01G262500' => 'cil', 'CiPaw.01G269800' => 'cil', 'CiPaw.02G168400' => 'cil', 'CiPaw.05G119500' => 'cil', 'CiPaw.11G147300' => 'cil', 'ClCG01G003630' => 'cla', 'ClCG05G000510' => 'cla', 'ClCG05G002300' => 'cla', 'ClCG08G007650' => 'cla', 'ClCG10G021250' => 'cla', 'COL.COLO4_06218' => 'col', 'COL.COLO4_12538' => 'col', 'COL.COLO4_14775' => 'col', 'COL.COLO4_23875' => 'col', 'Cpa.g.sc141.16' => 'cpa', 'Cpa.g.sc169.16' => 'cpa', 'Cpa.g.sc244.4' => 'cpa', 'Cpa.g.sc244.5' => 'cpa', 'Cpa.g.sc29.87' => 'cpa', 'Cpa.g.sc53.115' => 'cpa', 'Cre03.g207502' => 'cre', 'Cre06.g277000' => 'cre', 'Cre09.g394050' => 'cre', 'CsaV3_3G007680' => 'csa', 'CsaV3_3G009710' => 'csa', 'CsaV3_3G034790' => 'csa', 'CsaV3_5G003750' => 'csa', 'CsaV3_6G036620' => 'csa', 'CSS0002288' => 'camsi', 'CSS0011250' => 'camsi', 'CSS0021619' => 'camsi', 'CSS0046701' => 'camsi', 'DCAR_006420' => 'dca', 'DCAR_006865' => 'dca', 'DCAR_008558' => 'dca', 'DCAR_028754' => 'dca', 'DCAR_028755' => 'dca', 'Dinv31218' => 'din', 'Dinv32371' => 'din', 'Dinv34250' => 'din', 'Dinv37156' => 'din', 'Dinv43704' => 'din', 'Duzib093G1811' => 'dzi', 'Duzib106G1622' => 'dzi', 'Duzib114G0504' => 'dzi', 'Duzib128G0338' => 'dzi', 'Duzib128G1577' => 'dzi', 'Duzib133G0104' => 'dzi', 'Duzib133G1080' => 'dzi', 'Duzib138G0324' => 'dzi', 'Duzib138G0394' => 'dzi', 'Duzib205G0122' => 'dzi', 'Duzib268G1020' => 'dzi', 'Duzib268G1359' => 'dzi', 'ECA232G3929' => 'eca', 'ECA236G2210' => 'eca', 'ECA236G2287' => 'eca', 'ECA240G4568' => 'eca', 'ECA247G0894' => 'eca', 'EL10Ac1g00200' => 'bvu', 'EL10Ac1g00886' => 'bvu', 'EL10As1g23091' => 'bvu', 'EL10As1g23092' => 'bvu', 'Eucgr.A01284' => 'egr', 'Eucgr.A01285' => 'egr', 'Eucgr.D02456' => 'egr', 'Eucgr.E00018' => 'egr', 'Eucgr.E01439' => 'egr', 'Eucgr.G02859' => 'egr', 'FAN01G0168' => 'fan', 'FAN01G0453' => 'fan', 'FAN01G2761' => 'fan', 'FAN02G1239' => 'fan', 'FAN03G0645' => 'fan', 'FAN03G2707' => 'fan', 'FAN03G2978' => 'fan', 'FAN04G0227' => 'fan', 'FAN06G0091' => 'fan', 'FAN06G1418' => 'fan', 'FAN06G1512' => 'fan', 'FAN06G1986' => 'fan', 'FAN06G2905' => 'fan', 'FAN06G4325' => 'fan', 'FAN08G0033' => 'fan', 'FAN09G0642' => 'fan', 'FAN10G1763' => 'fan', 'FAN10G2026' => 'fan', 'FAN10G2513' => 'fan', 'FAN10G3402' => 'fan', 'FAN10G3564' => 'fan', 'FAN10G3987' => 'fan', 'FAN13G1490' => 'fan', 'FAN14G5857' => 'fan', 'FAN18G1188' => 'fan', 'FvH4_5g00750' => 'fve', 'FvH4_6g13410' => 'fve', 'FvH4_7g11740' => 'fve', 'FvH4_7g17410' => 'fve', 'FvH4_7g18860' => 'fve', 'Glyma.01G099100' => 'gma', 'Glyma.01G142300' => 'gma', 'Glyma.03G025500' => 'gma', 'Glyma.03G069700' => 'gma', 'Glyma.03G260000' => 'gma', 'Glyma.09G269800' => 'gma', 'Glyma.10G208700' => 'gma', 'Glyma.18G220400' => 'gma', 'Glyma.20G182000' => 'gma', 'Gohir.A01G221726' => 'ghi', 'Gohir.A07G134600' => 'ghi', 'Gohir.A07G146000' => 'ghi', 'Gohir.A08G173900' => 'ghi', 'Gohir.A09G194900' => 'ghi', 'Gohir.A10G204100' => 'ghi', 'Gohir.A11G080600' => 'ghi', 'Gohir.A11G327500' => 'ghi', 'Gohir.A12G101800' => 'ghi', 'Gohir.D01G211200' => 'ghi', 'Gohir.D07G139200' => 'ghi', 'Gohir.D07G152100' => 'ghi', 'Gohir.D08G192600' => 'ghi', 'Gohir.D09G189200' => 'ghi', 'Gohir.D10G212000' => 'ghi', 'Gohir.D11G085200' => 'ghi', 'Gohir.D11G346400' => 'ghi', 'Gohir.D12G104800' => 'ghi', 'Gorai.001G151300' => 'gra', 'Gorai.001G174100' => 'gra', 'Gorai.002G257000' => 'gra', 'Gorai.004G202600' => 'gra', 'Gorai.007G090900' => 'gra', 'Gorai.007G376700' => 'gra', 'Gorai.008G114100' => 'gra', 'Gorai.011G237900' => 'gra', 'GSVIVG01005450001' => 'vvi', 'GSVIVG01016232001' => 'vvi', 'GSVIVG01026157001' => 'vvi', 'GSVIVG01027419001' => 'vvi', 'GSVIVG01027631001' => 'vvi', 'GSVIVG01034143001' => 'vvi', 'HanXRQChr03g0093921' => 'han', 'HanXRQChr04g0120001' => 'han', 'HanXRQChr04g0122561' => 'han', 'HanXRQChr09g0246851' => 'han', 'HanXRQChr10g0293311' => 'han', 'HanXRQChr13g0425231' => 'han', 'HanXRQChr16g0532571' => 'han', 'Haze_09050' => 'cav', 'Haze_15715' => 'cav', 'Haze_15716' => 'cav', 'Haze_16803' => 'cav', 'Haze_16850' => 'cav', 'Hma1.2p1_0301F.1_g118655' => 'hma', 'Hma1.2p1_0309F.1_g120590' => 'hma', 'Hma1.2p1_0936F.1_g238900' => 'hma', 'Hma1.2p1_3552F.1_g336740' => 'hma', 'HPP92_003520' => 'vpl', 'HPP92_006628' => 'vpl', 'HPP92_006645' => 'vpl', 'HPP92_014669' => 'vpl', 'HPP92_015077' => 'vpl', 'Hund16742' => 'sun', 'Hund17022' => 'sun', 'Lalb_Chr02g0152131' => 'lal', 'Lalb_Chr05g0225371' => 'lal', 'Lalb_Chr07g0189841' => 'lal', 'Lalb_Chr07g0192961' => 'lal', 'Lalb_Chr12g0208221' => 'lal', 'Lalb_Chr13g0291211' => 'lal', 'Lalb_Chr13g0291781' => 'lal', 'Lalb_Chr18g0044651' => 'lal', 'Lalb_Chr21g0313731' => 'lal', 'Lj1g0022533' => 'lja', 'Lj2A18T50' => 'lonja', 'Lj2A92G93' => 'lonja', 'Lj3A965T73' => 'lonja', 'Lj3g0000673' => 'lja', 'Lj3g0002666' => 'lja', 'Lj4g0016985' => 'lja', 'Lj5g0003625' => 'lja', 'Lj7A529G36' => 'lonja', 'Lj9A569T49' => 'lonja', 'Lj9A604T63' => 'lonja', 'Lsat_1_v5_gn_3_132060' => 'lsa', 'Lsat_1_v5_gn_4_68941' => 'lsa', 'Lsat_1_v5_gn_5_95580' => 'lsa', 'Lsat_1_v5_gn_7_161' => 'lsa', 'Lsat_1_v5_gn_7_7041' => 'lsa', 'Lsat_1_v5_gn_9_33481' => 'lsa', 'Lsat_1_v5_gn_9_68260' => 'lsa', 'Manes.01G073100' => 'mes', 'Manes.01G266300' => 'mes', 'Manes.02G033300' => 'mes', 'Manes.05G017900' => 'mes', 'Manes.05G046100' => 'mes', 'Manes.08G080900' => 'mes', 'Manes.10G049400' => 'mes', 'Mapoly0009s0186' => 'mpo', 'Mapoly0036s0118' => 'mpo', 'Mapoly0101s0046' => 'mpo', 'MBI04_g30218_MAGBIO' => 'mbi', 'MBI04_g35564_MAGBIO' => 'mbi', 'MBI12_g34011_MAGBIO' => 'mbi', 'MBI14_g04655_MAGBIO' => 'mbi', 'MCO07G653' => 'mco', 'MCO10G173' => 'mco', 'MD01G1087100' => 'mdo', 'MD01G1104200' => 'mdo', 'MD02G1205100' => 'mdo', 'MD04G1079200' => 'mdo', 'MD04G1131400' => 'mdo', 'MD07G1121600' => 'mdo', 'MD07G1157300' => 'mdo', 'MD07G1171000' => 'mdo', 'MD12G1144500' => 'mdo', 'Medtr1g094610' => 'mtr', 'Medtr4g021795' => 'mtr', 'Medtr4g023760' => 'mtr', 'Medtr7g118050' => 'mtr', 'MELO3C005582.2' => 'cme', 'MELO3C005989.2' => 'cme', 'MELO3C006192.2' => 'cme', 'MELO3C009248.2' => 'cme', 'MELO3C019817.2' => 'cme', 'Migut.B01625' => 'egut', 'Migut.B01915' => 'egut', 'Migut.F01721' => 'egut', 'Migut.J00314' => 'egut', 'MSTRG.20742' => 'ama', 'MSTRG.8134' => 'ama', 'Nitab4.5_0000096g0010' => 'nta', 'Nitab4.5_0000202g0030' => 'nta', 'Nitab4.5_0000216g0370' => 'nta', 'Nitab4.5_0000457g0230' => 'nta', 'Nitab4.5_0001702g0170' => 'nta', 'Nitab4.5_0003607g0010' => 'nta', 'Nitab4.5_0004917g0020' => 'nta', 'Nitab4.5_0007059g0010' => 'nta', 'Nitab4.5_0007184g0010' => 'nta', 'Nitab4.5_0007346g0020' => 'nta', 'Nn1g00410' => 'nnu', 'Nn1g01252' => 'nnu', 'Nn2g11168' => 'nnu', 'Nn2g13403' => 'nnu', 'Nn2g13760' => 'nnu', 'Nn4g26380' => 'nnu', 'Oeu000806.2' => 'oeu', 'Oeu005788.1' => 'oeu', 'Oeu006900.3' => 'oeu', 'Oeu007797.1' => 'oeu', 'Oeu011932.1' => 'oeu', 'Oeu022739.1' => 'oeu', 'Oeu037918.1' => 'oeu', 'Oeu055490.2' => 'oeu', 'Os01g0844400' => 'osa', 'Os02g0819100' => 'osa', 'Os03g0804300' => 'osa', 'Os05g0458000' => 'osa', 'Os07g0467800' => 'osa', 'Os12g0602200' => 'osa', 'Peaxi162Scf00013g03444' => 'pax', 'Peaxi162Scf00094g01120' => 'pax', 'Peaxi162Scf00191g01211' => 'pax', 'Peaxi162Scf00238g01110' => 'pax', 'Peaxi162Scf00330g00719' => 'pax', 'Peaxi162Scf00627g00018' => 'pax', 'PGR031G2686' => 'pgr', 'PGR042G0809' => 'pgr', 'PGR142G0193' => 'pgr', 'PGSC0003DMG400011066' => 'stu', 'PGSC0003DMG400012041' => 'stu', 'PGSC0003DMG400013678' => 'stu', 'PGSC0003DMG400023477' => 'stu', 'PGSC0003DMG400025956' => 'stu', 'PGSC0003DMG401019151' => 'stu', 'Phvul.006G116400' => 'pvu', 'Phvul.007G097300' => 'pvu', 'Phvul.010G015000' => 'pvu', 'Phvul.010G083900' => 'pvu', 'Potri.001G117100' => 'ptr', 'Potri.002G147300' => 'ptr', 'Potri.003G115600' => 'ptr', 'Potri.006G087400' => 'ptr', 'Potri.010G226100' => 'ptr', 'Potri.014G069200' => 'ptr', 'Potri.014G104000' => 'ptr', 'Potri.016G100200' => 'ptr', 'Pp3c10_20450' => 'ppa', 'Pp3c1_42400' => 'ppa', 'Pp3c3_24390' => 'ppa', 'Pp3c3_2860' => 'ppa', 'PRCOL_00003193' => 'pco', 'Prupe.2G144500' => 'ppe', 'Prupe.2G195700' => 'ppe', 'Prupe.2G209800' => 'ppe', 'Prupe.5G080000' => 'ppe', 'Prupe.6G257900' => 'ppe', 'Psat3g001160' => 'psa', 'Psat6g181880' => 'psa', 'Psat7g233720' => 'psa', 'PSO063G7587' => 'pso', 'PSO339G2145' => 'pso', 'PSO339G3369' => 'pso', 'PSO478G2747' => 'pso', 'PSO513G0140' => 'pso', 'PSO782G1614' => 'pso', 'PSO782G4889' => 'pso', 'PSO782G5485' => 'pso', 'PSO801G0241' => 'pso', 'QL07p048854' => 'qlo', 'QL08p046745' => 'qlo', 'QL08p052606' => 'qlo', 'QL08p053414' => 'qlo', 'QL08p054868' => 'qlo', 'RcHm_v2.0_Chr1g0350251' => 'rch', 'RcHm_v2.0_Chr1g0360851' => 'rch', 'RcHm_v2.0_Chr1g0362791' => 'rch', 'RcHm_v2.0_Chr3g0466281' => 'rch', 'RcHm_v2.0_Chr7g0201481' => 'rch', 'Rhsim01G0148600' => 'rsi', 'Rhsim05G0194400' => 'rsi', 'Rhsim07G0000700' => 'rsi', 'Rhsim07G0000800' => 'rsi', 'Rhsim07G0027900' => 'rsi', 'Rhsim09G0149500' => 'rsi', 'RhsimUnG0186900' => 'rsi', 'Sabra01G0089900' => 'sbr', 'Sabra02G0114700' => 'sbr', 'Sabra02G0116300' => 'sbr', 'Sabra03G0080100' => 'sbr', 'Sabra08G0024300' => 'sbr', 'Sabra10G0174300' => 'sbr', 'Sabra14G0048900' => 'sbr', 'Sabra14G0076500' => 'sbr', 'SalBow5G2513' => 'sbo', 'Sc01g0002300' => 'sci', 'Sc01g0004450' => 'sci', 'Sc06g0001680' => 'sci', 'Sc23g0003580' => 'sci', 'Sed0000913' => 'sed', 'Sed0001655' => 'sed', 'Sed0007745' => 'sed', 'Sed0010951' => 'sed', 'Sed0017599' => 'sed', 'Sed0021405' => 'sed', 'Sed0022810' => 'sed', 'SEGI_07099' => 'sgi', 'SEGI_11931' => 'sgi', 'SEGI_13187' => 'sgi', 'SEGI_29958' => 'sgi', 'SEGI_36351' => 'sgi', 'SGA_v2.0_scaffold126G33770' => 'sas', 'SGA_v2.0_scaffold153G37003' => 'sas', 'SGA_v2.0_scaffold2G01359' => 'sas', 'SGA_v2.0_scaffold5G03064' => 'sas', 'SGA_v2.0_scaffold95G28903' => 'sas', 'SHI12701' => 'shi', 'SHI26410' => 'shi', 'SHI38997' => 'shi', 'SHI53759' => 'shi', 'SHI53886' => 'shi', 'SHI54714' => 'shi', 'SMO011G0041' => 'smo', 'SMO146G0251' => 'smo', 'SMO160G0004' => 'smo', 'SMO174G0057' => 'smo', 'SMO244G0089' => 'smo', 'SMO296G0011' => 'smo', 'Solyc01g091280.3' => 'sly', 'Solyc05g047610.3' => 'sly', 'Solyc05g047640.3' => 'sly', 'Solyc05g055630.3' => 'sly', 'Solyc10g018160.2' => 'sly', 'Solyc10g084820.2' => 'sly', 'Solyc10g086565.2' => 'sly', 'Sopen01g037030' => 'spe', 'Sopen05g027920' => 'spe', 'Sopen05g034070' => 'spe', 'Sopen10g007260' => 'spe', 'Sopen10g034260' => 'spe', 'Sopen10g035950' => 'spe', 'Sp3g07710' => 'spa', 'Sp4g27420' => 'spa', 'Sp5g02450' => 'spa', 'Sp6g01280' => 'spa', 'Sp6g38480' => 'spa', 'Sp7g20780' => 'spa', 'TAR374G1413' => 'tar', 'TAR623G1777' => 'tar', 'TAR629G2370' => 'tar', 'TAR633G1759' => 'tar', 'TAR636G3387' => 'tar', 'THA.LOC104802447' => 'tha', 'THA.LOC104813916' => 'tha', 'THA.LOC104816423' => 'tha', 'THA.LOC104817246' => 'tha', 'THA.LOC104825895' => 'tha', 'Thecc.01G335200' => 'tca', 'Thecc.01G377400' => 'tca', 'Thecc.03G262200' => 'tca', 'Thecc.05G036800' => 'tca', 'Thecc.10G080500' => 'tca', 'Thecc.10G080800' => 'tca', 'Thhalv10001560m.g' => 'esa', 'Thhalv10006120m.g' => 'esa', 'Thhalv10014375m.g' => 'esa', 'Thhalv10021264m.g' => 'esa', 'Thhalv10028856m.g' => 'esa', 'TPR.G1914' => 'tpr', 'TPR.G4757' => 'tpr', 'TPR.G5595' => 'tpr', 'TWI14G0952' => 'twi', 'TWI14G1307' => 'twi', 'TWI38G2143' => 'twi', 'TWI59G0826' => 'twi', 'TWI77G0527' => 'twi', 'TWI81G0150' => 'twi', 'unitig_21.g21018' => 'ugi', 'unitig_26.g9725' => 'ugi', 'unitig_744.g24653' => 'ugi', 'unitig_749.g13778' => 'ugi', 'unitig_899.g15035' => 'ugi', 'vmacro04296' => 'vma', 'vmacro04852' => 'vma', 'vmacro13404' => 'vma', 'vmacro20169' => 'vma', 'vmacro21014' => 'vma', 'VMungo0331G0237' => 'vmu', 'VMungo0331G0706' => 'vmu', 'VMungo0331G1361' => 'vmu', 'VMungo0331G1489' => 'vmu', 'VMungo0540G1037' => 'vmu', 'VMungo0720G2487' => 'vmu', 'VMungo0720G2721' => 'vmu', 'Zm00001eb086860' => 'zma', 'Zm00001eb104760' => 'zma', 'Zm00001eb148220' => 'zma', 'Zm00001eb259030' => 'zma', 'Zm00001eb289590' => 'zma', 'Zm00001eb420150' => 'zma' ) $gf_id = 'HOM05D000968' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000968' ) $data_identifier = 'HOM05D000968' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 19, 'bol' => (int) 9, 'bra' => (int) 12, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 5, 'ccan' => (int) 7, 'cde' => (int) 5, 'cfa' => (int) 8, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 4, 'dca' => (int) 5, 'din' => (int) 5, 'dzi' => (int) 12, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 25, 'fve' => (int) 5, 'gma' => (int) 9, 'ghi' => (int) 18, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 7, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 5, 'sun' => (int) 2, 'lal' => (int) 9, 'lja' => (int) 5, 'lonja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 9, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 2, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 3, 'stu' => (int) 6, 'pvu' => (int) 4, 'ptr' => (int) 8, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 3, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 1, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 5, 'sas' => (int) 5, 'shi' => (int) 6, 'smo' => (int) 6, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 3, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420150' $species_info = array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ) $local_species = 'egr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000968', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p31690' => 'bna', 'A03p36040' => 'bna', 'A03p53730' => 'bna', 'A04p01410' => 'bna', 'A05p05420' => 'bna', 'A05p39630' => 'bna', 'A05p39640' => 'bna', 'A09p00970' => 'bna', 'A09p53060' => 'bna', 'A10p31890' => 'bna', 'Aa31LG10G15040' => 'aar', 'Aa31LG1G21090' => 'aar', 'Aa31LG1G26900' => 'aar', 'Aa31LG3G1820' => 'aar', 'Aa31LG5G1100' => 'aar', 'Aa31LG6G4740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2265' => 'aag', 'Actinidia07998' => 'ach', 'Actinidia11266' => 'ach', 'Actinidia12682' => 'ach', 'Actinidia26479' => 'ach', 'Actinidia31406' => 'ach', 'Actinidia32437' => 'ach', 'Actinidia38862' => 'ach', 'Ah.05g174230' => 'amhyb', 'Ah.05g179070' => 'amhyb', 'Ah.05g179090' => 'amhyb', 'Ah.12g059950' => 'amhyb', 'AL3G20480' => 'aly', 'AL4G44520' => 'aly', 'AL5G43110' => 'aly', 'AL6G13890' => 'aly', 'AL6G52620' => 'aly', 'AL7G30830' => 'aly', 'Aqoxy1G00899' => 'aox', 'Aqoxy5G04333' => 'aox', 'Aqoxy7G00641' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3IZ0NN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4EF6AW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W9P8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79GA3M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C43NQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFCU6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G95YVJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCHK29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LU1UG8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX91RN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGB4B1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8DA0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9H7JI' => 'arhy', 'AT3G09320' => 'ath', 'AT3G60800' => 'ath', 'AT4G00840' => 'ath', 'AT4G22750' => 'ath', 'AT5G04270' => 'ath', 'ATR0090G003' => 'atr', 'ATR0559G349' => 'atr', 'ATR0680G261' => 'atr', 'ATR0810G048' => 'atr', 'Atru.chr12.831' => 'acertr', 'Atru.chr5.303' => 'acertr', 'Atru.chr5.748' => 'acertr', 'Atru.chr8.1999' => 'acertr', 'Atru.chr9.1436' => 'acertr', 'AUR62004211' => 'cqu', 'AUR62004548' => 'cqu', 'AUR62013637' => 'cqu', 'AUR62022662' => 'cqu', 'AUR62025777' => 'cqu', 'AUR62042386' => 'cqu', 'BcaB01g02310' => 'bca', 'BcaB01g06062' => 'bca', 'BcaB02g08975' => 'bca', 'BcaB02g08980' => 'bca', 'BcaC01g04228' => 'bca', 'BcaC01g06830' => 'bca', 'BcaC02g10186' => 'bca', 'BcaC02g12214' => 'bca', 'BcaC04g24101' => 'bca', 'BcaC05g29520' => 'bca', 'BcaC05g29661' => 'bca', 'BcaC06g32130' => 'bca', 'BcaC06g32131' => 'bca', 'BcaC07g40601' => 'bca', 'BcaC07g42641' => 'bca', 'BcaNung01038' => 'bca', 'BcaNung01676' => 'bca', 'BcaNung02480' => 'bca', 'BcaNung07376' => 'bca', 'BolC3t16146H' => 'bol', 'BolC3t16637H' => 'bol', 'BolC4t22257H' => 'bol', 'BolC4t24728H' => 'bol', 'BolC5t34517H' => 'bol', 'BolC7t45703H' => 'bol', 'BolC8t51166H' => 'bol', 'BolC9t53038H' => 'bol', 'BolC9t60000H' => 'bol', 'BraA01t01345Z' => 'bra', 'BraA01t01346Z' => 'bra', 'BraA01t01348Z' => 'bra', 'BraA03t12347Z' => 'bra', 'BraA03t12775Z' => 'bra', 'BraA03t14439Z' => 'bra', 'BraA04t15860Z' => 'bra', 'BraA05t19511Z' => 'bra', 'BraA05t22746Z' => 'bra', 'BraA09t35767Z' => 'bra', 'BraA09t40732Z' => 'bra', 'BraA10t45233Z' => 'bra', 'C03p38720' => 'bna', 'C03p43680' => 'bna', 'C04p06350' => 'bna', 'C04p31800' => 'bna', 'C05p58680' => 'bna', 'C07p52110' => 'bna', 'C08p35760' => 'bna', 'C09p01050' => 'bna', 'C09p72600' => 'bna', 'CAN.G106.2' => 'can', 'CAN.G1482.1' => 'can', 'CAN.G324.12' => 'can', 'CAN.G388.20' => 'can', 'CAN.G412.7' => 'can', 'CAN.G694.32' => 'can', 'CAN.G92.12' => 'can', 'CANSAT11G2353' => 'cansat', 'CANSAT21G1398' => 'cansat', 'CANSAT56G2456' => 'cansat', 'CANSAT56G3031' => 'cansat', 'CANSAT56G4539' => 'cansat', 'CARHR083680' => 'chi', 'CARHR171190' => 'chi', 'CARHR209010' => 'chi', 'CARHR229680' => 'chi', 'CARHR249490' => 'chi', 'Carub.0003s0844' => 'cru', 'Carub.0005s2755' => 'cru', 'Carub.0006s0322' => 'cru', 'Carub.0006s3586' => 'cru', 'Carub.0007s1855' => 'cru', 'Ca_07808_v3' => 'car', 'Ca_09535_v3' => 'car', 'Ca_10548_v3' => 'car', 'Ca_19913_v3' => 'car', 'Ca_19916_v3' => 'car', 'Ca_19975_v3' => 'car', 'CBR_g22876' => 'cbr', 'CBR_g22879' => 'cbr', 'CBR_g38491' => 'cbr', 'CBR_g54185' => 'cbr', 'CBR_g54190' => 'cbr', 'Cc02_g11020' => 'ccan', 'Cc02_g23920' => 'ccan', 'Cc02_g39860' => 'ccan', 'Cc02_g39870' => 'ccan', 'Cc03_g06760' => 'ccan', 'Cc06_g02450' => 'ccan', 'Cc09_g09450' => 'ccan', 'CDE02G1959' => 'cde', 'CDE04G0600' => 'cde', 'CDE07G1996' => 'cde', 'CDE07G2078' => 'cde', 'CDE11G0611' => 'cde', 'Cfa001683' => 'cfa', 'Cfa001734' => 'cfa', 'Cfa001737' => 'cfa', 'Cfa003751' => 'cfa', 'Cfa012019' => 'cfa', 'Cfa017353' => 'cfa', 'Cfa017732' => 'cfa', 'Cfa022464' => 'cfa', 'Ciclev10012400m.g' => 'ccl', 'Ciclev10021242m.g' => 'ccl', 'Ciclev10021302m.g' => 'ccl', 'Ciclev10021463m.g' => 'ccl', 'Ciclev10032359m.g' => 'ccl', 'CiPaw.01G081000' => 'cil', 'CiPaw.01G262500' => 'cil', 'CiPaw.01G269800' => 'cil', 'CiPaw.02G168400' => 'cil', 'CiPaw.05G119500' => 'cil', 'CiPaw.11G147300' => 'cil', 'ClCG01G003630' => 'cla', 'ClCG05G000510' => 'cla', 'ClCG05G002300' => 'cla', 'ClCG08G007650' => 'cla', 'ClCG10G021250' => 'cla', 'COL.COLO4_06218' => 'col', 'COL.COLO4_12538' => 'col', 'COL.COLO4_14775' => 'col', 'COL.COLO4_23875' => 'col', 'Cpa.g.sc141.16' => 'cpa', 'Cpa.g.sc169.16' => 'cpa', 'Cpa.g.sc244.4' => 'cpa', 'Cpa.g.sc244.5' => 'cpa', 'Cpa.g.sc29.87' => 'cpa', 'Cpa.g.sc53.115' => 'cpa', 'Cre03.g207502' => 'cre', 'Cre06.g277000' => 'cre', 'Cre09.g394050' => 'cre', 'CsaV3_3G007680' => 'csa', 'CsaV3_3G009710' => 'csa', 'CsaV3_3G034790' => 'csa', 'CsaV3_5G003750' => 'csa', 'CsaV3_6G036620' => 'csa', 'CSS0002288' => 'camsi', 'CSS0011250' => 'camsi', 'CSS0021619' => 'camsi', 'CSS0046701' => 'camsi', 'DCAR_006420' => 'dca', 'DCAR_006865' => 'dca', 'DCAR_008558' => 'dca', 'DCAR_028754' => 'dca', 'DCAR_028755' => 'dca', 'Dinv31218' => 'din', 'Dinv32371' => 'din', 'Dinv34250' => 'din', 'Dinv37156' => 'din', 'Dinv43704' => 'din', 'Duzib093G1811' => 'dzi', 'Duzib106G1622' => 'dzi', 'Duzib114G0504' => 'dzi', 'Duzib128G0338' => 'dzi', 'Duzib128G1577' => 'dzi', 'Duzib133G0104' => 'dzi', 'Duzib133G1080' => 'dzi', 'Duzib138G0324' => 'dzi', 'Duzib138G0394' => 'dzi', 'Duzib205G0122' => 'dzi', 'Duzib268G1020' => 'dzi', 'Duzib268G1359' => 'dzi', 'ECA232G3929' => 'eca', 'ECA236G2210' => 'eca', 'ECA236G2287' => 'eca', 'ECA240G4568' => 'eca', 'ECA247G0894' => 'eca', 'EL10Ac1g00200' => 'bvu', 'EL10Ac1g00886' => 'bvu', 'EL10As1g23091' => 'bvu', 'EL10As1g23092' => 'bvu', 'Eucgr.A01284' => 'egr', 'Eucgr.A01285' => 'egr', 'Eucgr.D02456' => 'egr', 'Eucgr.E00018' => 'egr', 'Eucgr.E01439' => 'egr', 'Eucgr.G02859' => 'egr', 'FAN01G0168' => 'fan', 'FAN01G0453' => 'fan', 'FAN01G2761' => 'fan', 'FAN02G1239' => 'fan', 'FAN03G0645' => 'fan', 'FAN03G2707' => 'fan', 'FAN03G2978' => 'fan', 'FAN04G0227' => 'fan', 'FAN06G0091' => 'fan', 'FAN06G1418' => 'fan', 'FAN06G1512' => 'fan', 'FAN06G1986' => 'fan', 'FAN06G2905' => 'fan', 'FAN06G4325' => 'fan', 'FAN08G0033' => 'fan', 'FAN09G0642' => 'fan', 'FAN10G1763' => 'fan', 'FAN10G2026' => 'fan', 'FAN10G2513' => 'fan', 'FAN10G3402' => 'fan', 'FAN10G3564' => 'fan', 'FAN10G3987' => 'fan', 'FAN13G1490' => 'fan', 'FAN14G5857' => 'fan', 'FAN18G1188' => 'fan', 'FvH4_5g00750' => 'fve', 'FvH4_6g13410' => 'fve', 'FvH4_7g11740' => 'fve', 'FvH4_7g17410' => 'fve', 'FvH4_7g18860' => 'fve', 'Glyma.01G099100' => 'gma', 'Glyma.01G142300' => 'gma', 'Glyma.03G025500' => 'gma', 'Glyma.03G069700' => 'gma', 'Glyma.03G260000' => 'gma', 'Glyma.09G269800' => 'gma', 'Glyma.10G208700' => 'gma', 'Glyma.18G220400' => 'gma', 'Glyma.20G182000' => 'gma', 'Gohir.A01G221726' => 'ghi', 'Gohir.A07G134600' => 'ghi', 'Gohir.A07G146000' => 'ghi', 'Gohir.A08G173900' => 'ghi', 'Gohir.A09G194900' => 'ghi', 'Gohir.A10G204100' => 'ghi', 'Gohir.A11G080600' => 'ghi', 'Gohir.A11G327500' => 'ghi', 'Gohir.A12G101800' => 'ghi', 'Gohir.D01G211200' => 'ghi', 'Gohir.D07G139200' => 'ghi', 'Gohir.D07G152100' => 'ghi', 'Gohir.D08G192600' => 'ghi', 'Gohir.D09G189200' => 'ghi', 'Gohir.D10G212000' => 'ghi', 'Gohir.D11G085200' => 'ghi', 'Gohir.D11G346400' => 'ghi', 'Gohir.D12G104800' => 'ghi', 'Gorai.001G151300' => 'gra', 'Gorai.001G174100' => 'gra', 'Gorai.002G257000' => 'gra', 'Gorai.004G202600' => 'gra', 'Gorai.007G090900' => 'gra', 'Gorai.007G376700' => 'gra', 'Gorai.008G114100' => 'gra', 'Gorai.011G237900' => 'gra', 'GSVIVG01005450001' => 'vvi', 'GSVIVG01016232001' => 'vvi', 'GSVIVG01026157001' => 'vvi', 'GSVIVG01027419001' => 'vvi', 'GSVIVG01027631001' => 'vvi', 'GSVIVG01034143001' => 'vvi', 'HanXRQChr03g0093921' => 'han', 'HanXRQChr04g0120001' => 'han', 'HanXRQChr04g0122561' => 'han', 'HanXRQChr09g0246851' => 'han', 'HanXRQChr10g0293311' => 'han', 'HanXRQChr13g0425231' => 'han', 'HanXRQChr16g0532571' => 'han', 'Haze_09050' => 'cav', 'Haze_15715' => 'cav', 'Haze_15716' => 'cav', 'Haze_16803' => 'cav', 'Haze_16850' => 'cav', 'Hma1.2p1_0301F.1_g118655' => 'hma', 'Hma1.2p1_0309F.1_g120590' => 'hma', 'Hma1.2p1_0936F.1_g238900' => 'hma', 'Hma1.2p1_3552F.1_g336740' => 'hma', 'HPP92_003520' => 'vpl', 'HPP92_006628' => 'vpl', 'HPP92_006645' => 'vpl', 'HPP92_014669' => 'vpl', 'HPP92_015077' => 'vpl', 'Hund16742' => 'sun', 'Hund17022' => 'sun', 'Lalb_Chr02g0152131' => 'lal', 'Lalb_Chr05g0225371' => 'lal', 'Lalb_Chr07g0189841' => 'lal', 'Lalb_Chr07g0192961' => 'lal', 'Lalb_Chr12g0208221' => 'lal', 'Lalb_Chr13g0291211' => 'lal', 'Lalb_Chr13g0291781' => 'lal', 'Lalb_Chr18g0044651' => 'lal', 'Lalb_Chr21g0313731' => 'lal', 'Lj1g0022533' => 'lja', 'Lj2A18T50' => 'lonja', 'Lj2A92G93' => 'lonja', 'Lj3A965T73' => 'lonja', 'Lj3g0000673' => 'lja', 'Lj3g0002666' => 'lja', 'Lj4g0016985' => 'lja', 'Lj5g0003625' => 'lja', 'Lj7A529G36' => 'lonja', 'Lj9A569T49' => 'lonja', 'Lj9A604T63' => 'lonja', 'Lsat_1_v5_gn_3_132060' => 'lsa', 'Lsat_1_v5_gn_4_68941' => 'lsa', 'Lsat_1_v5_gn_5_95580' => 'lsa', 'Lsat_1_v5_gn_7_161' => 'lsa', 'Lsat_1_v5_gn_7_7041' => 'lsa', 'Lsat_1_v5_gn_9_33481' => 'lsa', 'Lsat_1_v5_gn_9_68260' => 'lsa', 'Manes.01G073100' => 'mes', 'Manes.01G266300' => 'mes', 'Manes.02G033300' => 'mes', 'Manes.05G017900' => 'mes', 'Manes.05G046100' => 'mes', 'Manes.08G080900' => 'mes', 'Manes.10G049400' => 'mes', 'Mapoly0009s0186' => 'mpo', 'Mapoly0036s0118' => 'mpo', 'Mapoly0101s0046' => 'mpo', 'MBI04_g30218_MAGBIO' => 'mbi', 'MBI04_g35564_MAGBIO' => 'mbi', 'MBI12_g34011_MAGBIO' => 'mbi', 'MBI14_g04655_MAGBIO' => 'mbi', 'MCO07G653' => 'mco', 'MCO10G173' => 'mco', 'MD01G1087100' => 'mdo', 'MD01G1104200' => 'mdo', 'MD02G1205100' => 'mdo', 'MD04G1079200' => 'mdo', 'MD04G1131400' => 'mdo', 'MD07G1121600' => 'mdo', 'MD07G1157300' => 'mdo', 'MD07G1171000' => 'mdo', 'MD12G1144500' => 'mdo', 'Medtr1g094610' => 'mtr', 'Medtr4g021795' => 'mtr', 'Medtr4g023760' => 'mtr', 'Medtr7g118050' => 'mtr', 'MELO3C005582.2' => 'cme', 'MELO3C005989.2' => 'cme', 'MELO3C006192.2' => 'cme', 'MELO3C009248.2' => 'cme', 'MELO3C019817.2' => 'cme', 'Migut.B01625' => 'egut', 'Migut.B01915' => 'egut', 'Migut.F01721' => 'egut', 'Migut.J00314' => 'egut', 'MSTRG.20742' => 'ama', 'MSTRG.8134' => 'ama', 'Nitab4.5_0000096g0010' => 'nta', 'Nitab4.5_0000202g0030' => 'nta', 'Nitab4.5_0000216g0370' => 'nta', 'Nitab4.5_0000457g0230' => 'nta', 'Nitab4.5_0001702g0170' => 'nta', 'Nitab4.5_0003607g0010' => 'nta', 'Nitab4.5_0004917g0020' => 'nta', 'Nitab4.5_0007059g0010' => 'nta', 'Nitab4.5_0007184g0010' => 'nta', 'Nitab4.5_0007346g0020' => 'nta', 'Nn1g00410' => 'nnu', 'Nn1g01252' => 'nnu', 'Nn2g11168' => 'nnu', 'Nn2g13403' => 'nnu', 'Nn2g13760' => 'nnu', 'Nn4g26380' => 'nnu', 'Oeu000806.2' => 'oeu', 'Oeu005788.1' => 'oeu', 'Oeu006900.3' => 'oeu', 'Oeu007797.1' => 'oeu', 'Oeu011932.1' => 'oeu', 'Oeu022739.1' => 'oeu', 'Oeu037918.1' => 'oeu', 'Oeu055490.2' => 'oeu', 'Os01g0844400' => 'osa', 'Os02g0819100' => 'osa', 'Os03g0804300' => 'osa', 'Os05g0458000' => 'osa', 'Os07g0467800' => 'osa', 'Os12g0602200' => 'osa', 'Peaxi162Scf00013g03444' => 'pax', 'Peaxi162Scf00094g01120' => 'pax', 'Peaxi162Scf00191g01211' => 'pax', 'Peaxi162Scf00238g01110' => 'pax', 'Peaxi162Scf00330g00719' => 'pax', 'Peaxi162Scf00627g00018' => 'pax', 'PGR031G2686' => 'pgr', 'PGR042G0809' => 'pgr', 'PGR142G0193' => 'pgr', 'PGSC0003DMG400011066' => 'stu', 'PGSC0003DMG400012041' => 'stu', 'PGSC0003DMG400013678' => 'stu', 'PGSC0003DMG400023477' => 'stu', 'PGSC0003DMG400025956' => 'stu', 'PGSC0003DMG401019151' => 'stu', 'Phvul.006G116400' => 'pvu', 'Phvul.007G097300' => 'pvu', 'Phvul.010G015000' => 'pvu', 'Phvul.010G083900' => 'pvu', 'Potri.001G117100' => 'ptr', 'Potri.002G147300' => 'ptr', 'Potri.003G115600' => 'ptr', 'Potri.006G087400' => 'ptr', 'Potri.010G226100' => 'ptr', 'Potri.014G069200' => 'ptr', 'Potri.014G104000' => 'ptr', 'Potri.016G100200' => 'ptr', 'Pp3c10_20450' => 'ppa', 'Pp3c1_42400' => 'ppa', 'Pp3c3_24390' => 'ppa', 'Pp3c3_2860' => 'ppa', 'PRCOL_00003193' => 'pco', 'Prupe.2G144500' => 'ppe', 'Prupe.2G195700' => 'ppe', 'Prupe.2G209800' => 'ppe', 'Prupe.5G080000' => 'ppe', 'Prupe.6G257900' => 'ppe', 'Psat3g001160' => 'psa', 'Psat6g181880' => 'psa', 'Psat7g233720' => 'psa', 'PSO063G7587' => 'pso', 'PSO339G2145' => 'pso', 'PSO339G3369' => 'pso', 'PSO478G2747' => 'pso', 'PSO513G0140' => 'pso', 'PSO782G1614' => 'pso', 'PSO782G4889' => 'pso', 'PSO782G5485' => 'pso', 'PSO801G0241' => 'pso', 'QL07p048854' => 'qlo', 'QL08p046745' => 'qlo', 'QL08p052606' => 'qlo', 'QL08p053414' => 'qlo', 'QL08p054868' => 'qlo', 'RcHm_v2.0_Chr1g0350251' => 'rch', 'RcHm_v2.0_Chr1g0360851' => 'rch', 'RcHm_v2.0_Chr1g0362791' => 'rch', 'RcHm_v2.0_Chr3g0466281' => 'rch', 'RcHm_v2.0_Chr7g0201481' => 'rch', 'Rhsim01G0148600' => 'rsi', 'Rhsim05G0194400' => 'rsi', 'Rhsim07G0000700' => 'rsi', 'Rhsim07G0000800' => 'rsi', 'Rhsim07G0027900' => 'rsi', 'Rhsim09G0149500' => 'rsi', 'RhsimUnG0186900' => 'rsi', 'Sabra01G0089900' => 'sbr', 'Sabra02G0114700' => 'sbr', 'Sabra02G0116300' => 'sbr', 'Sabra03G0080100' => 'sbr', 'Sabra08G0024300' => 'sbr', 'Sabra10G0174300' => 'sbr', 'Sabra14G0048900' => 'sbr', 'Sabra14G0076500' => 'sbr', 'SalBow5G2513' => 'sbo', 'Sc01g0002300' => 'sci', 'Sc01g0004450' => 'sci', 'Sc06g0001680' => 'sci', 'Sc23g0003580' => 'sci', 'Sed0000913' => 'sed', 'Sed0001655' => 'sed', 'Sed0007745' => 'sed', 'Sed0010951' => 'sed', 'Sed0017599' => 'sed', 'Sed0021405' => 'sed', 'Sed0022810' => 'sed', 'SEGI_07099' => 'sgi', 'SEGI_11931' => 'sgi', 'SEGI_13187' => 'sgi', 'SEGI_29958' => 'sgi', 'SEGI_36351' => 'sgi', 'SGA_v2.0_scaffold126G33770' => 'sas', 'SGA_v2.0_scaffold153G37003' => 'sas', 'SGA_v2.0_scaffold2G01359' => 'sas', 'SGA_v2.0_scaffold5G03064' => 'sas', 'SGA_v2.0_scaffold95G28903' => 'sas', 'SHI12701' => 'shi', 'SHI26410' => 'shi', 'SHI38997' => 'shi', 'SHI53759' => 'shi', 'SHI53886' => 'shi', 'SHI54714' => 'shi', 'SMO011G0041' => 'smo', 'SMO146G0251' => 'smo', 'SMO160G0004' => 'smo', 'SMO174G0057' => 'smo', 'SMO244G0089' => 'smo', 'SMO296G0011' => 'smo', 'Solyc01g091280.3' => 'sly', 'Solyc05g047610.3' => 'sly', 'Solyc05g047640.3' => 'sly', 'Solyc05g055630.3' => 'sly', 'Solyc10g018160.2' => 'sly', 'Solyc10g084820.2' => 'sly', 'Solyc10g086565.2' => 'sly', 'Sopen01g037030' => 'spe', 'Sopen05g027920' => 'spe', 'Sopen05g034070' => 'spe', 'Sopen10g007260' => 'spe', 'Sopen10g034260' => 'spe', 'Sopen10g035950' => 'spe', 'Sp3g07710' => 'spa', 'Sp4g27420' => 'spa', 'Sp5g02450' => 'spa', 'Sp6g01280' => 'spa', 'Sp6g38480' => 'spa', 'Sp7g20780' => 'spa', 'TAR374G1413' => 'tar', 'TAR623G1777' => 'tar', 'TAR629G2370' => 'tar', 'TAR633G1759' => 'tar', 'TAR636G3387' => 'tar', 'THA.LOC104802447' => 'tha', 'THA.LOC104813916' => 'tha', 'THA.LOC104816423' => 'tha', 'THA.LOC104817246' => 'tha', 'THA.LOC104825895' => 'tha', 'Thecc.01G335200' => 'tca', 'Thecc.01G377400' => 'tca', 'Thecc.03G262200' => 'tca', 'Thecc.05G036800' => 'tca', 'Thecc.10G080500' => 'tca', 'Thecc.10G080800' => 'tca', 'Thhalv10001560m.g' => 'esa', 'Thhalv10006120m.g' => 'esa', 'Thhalv10014375m.g' => 'esa', 'Thhalv10021264m.g' => 'esa', 'Thhalv10028856m.g' => 'esa', 'TPR.G1914' => 'tpr', 'TPR.G4757' => 'tpr', 'TPR.G5595' => 'tpr', 'TWI14G0952' => 'twi', 'TWI14G1307' => 'twi', 'TWI38G2143' => 'twi', 'TWI59G0826' => 'twi', 'TWI77G0527' => 'twi', 'TWI81G0150' => 'twi', 'unitig_21.g21018' => 'ugi', 'unitig_26.g9725' => 'ugi', 'unitig_744.g24653' => 'ugi', 'unitig_749.g13778' => 'ugi', 'unitig_899.g15035' => 'ugi', 'vmacro04296' => 'vma', 'vmacro04852' => 'vma', 'vmacro13404' => 'vma', 'vmacro20169' => 'vma', 'vmacro21014' => 'vma', 'VMungo0331G0237' => 'vmu', 'VMungo0331G0706' => 'vmu', 'VMungo0331G1361' => 'vmu', 'VMungo0331G1489' => 'vmu', 'VMungo0540G1037' => 'vmu', 'VMungo0720G2487' => 'vmu', 'VMungo0720G2721' => 'vmu', 'Zm00001eb086860' => 'zma', 'Zm00001eb104760' => 'zma', 'Zm00001eb148220' => 'zma', 'Zm00001eb259030' => 'zma', 'Zm00001eb289590' => 'zma', 'Zm00001eb420150' => 'zma' ), 'gf_id' => 'HOM05D000968', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000968' ), 'data_identifier' => 'HOM05D000968', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000968', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p31690' => 'bna', 'A03p36040' => 'bna', 'A03p53730' => 'bna', 'A04p01410' => 'bna', 'A05p05420' => 'bna', 'A05p39630' => 'bna', 'A05p39640' => 'bna', 'A09p00970' => 'bna', 'A09p53060' => 'bna', 'A10p31890' => 'bna', 'Aa31LG10G15040' => 'aar', 'Aa31LG1G21090' => 'aar', 'Aa31LG1G26900' => 'aar', 'Aa31LG3G1820' => 'aar', 'Aa31LG5G1100' => 'aar', 'Aa31LG6G4740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2265' => 'aag', 'Actinidia07998' => 'ach', 'Actinidia11266' => 'ach', 'Actinidia12682' => 'ach', 'Actinidia26479' => 'ach', 'Actinidia31406' => 'ach', 'Actinidia32437' => 'ach', 'Actinidia38862' => 'ach', 'Ah.05g174230' => 'amhyb', 'Ah.05g179070' => 'amhyb', 'Ah.05g179090' => 'amhyb', 'Ah.12g059950' => 'amhyb', 'AL3G20480' => 'aly', 'AL4G44520' => 'aly', 'AL5G43110' => 'aly', 'AL6G13890' => 'aly', 'AL6G52620' => 'aly', 'AL7G30830' => 'aly', 'Aqoxy1G00899' => 'aox', 'Aqoxy5G04333' => 'aox', 'Aqoxy7G00641' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3IZ0NN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4EF6AW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W9P8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79GA3M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C43NQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFCU6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G95YVJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCHK29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LU1UG8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX91RN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGB4B1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8DA0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9H7JI' => 'arhy', 'AT3G09320' => 'ath', 'AT3G60800' => 'ath', 'AT4G00840' => 'ath', 'AT4G22750' => 'ath', 'AT5G04270' => 'ath', 'ATR0090G003' => 'atr', 'ATR0559G349' => 'atr', 'ATR0680G261' => 'atr', 'ATR0810G048' => 'atr', 'Atru.chr12.831' => 'acertr', 'Atru.chr5.303' => 'acertr', 'Atru.chr5.748' => 'acertr', 'Atru.chr8.1999' => 'acertr', 'Atru.chr9.1436' => 'acertr', 'AUR62004211' => 'cqu', 'AUR62004548' => 'cqu', 'AUR62013637' => 'cqu', 'AUR62022662' => 'cqu', 'AUR62025777' => 'cqu', 'AUR62042386' => 'cqu', 'BcaB01g02310' => 'bca', 'BcaB01g06062' => 'bca', 'BcaB02g08975' => 'bca', 'BcaB02g08980' => 'bca', 'BcaC01g04228' => 'bca', 'BcaC01g06830' => 'bca', 'BcaC02g10186' => 'bca', 'BcaC02g12214' => 'bca', 'BcaC04g24101' => 'bca', 'BcaC05g29520' => 'bca', 'BcaC05g29661' => 'bca', 'BcaC06g32130' => 'bca', 'BcaC06g32131' => 'bca', 'BcaC07g40601' => 'bca', 'BcaC07g42641' => 'bca', 'BcaNung01038' => 'bca', 'BcaNung01676' => 'bca', 'BcaNung02480' => 'bca', 'BcaNung07376' => 'bca', 'BolC3t16146H' => 'bol', 'BolC3t16637H' => 'bol', 'BolC4t22257H' => 'bol', 'BolC4t24728H' => 'bol', 'BolC5t34517H' => 'bol', 'BolC7t45703H' => 'bol', 'BolC8t51166H' => 'bol', 'BolC9t53038H' => 'bol', 'BolC9t60000H' => 'bol', 'BraA01t01345Z' => 'bra', 'BraA01t01346Z' => 'bra', 'BraA01t01348Z' => 'bra', 'BraA03t12347Z' => 'bra', 'BraA03t12775Z' => 'bra', 'BraA03t14439Z' => 'bra', 'BraA04t15860Z' => 'bra', 'BraA05t19511Z' => 'bra', 'BraA05t22746Z' => 'bra', 'BraA09t35767Z' => 'bra', 'BraA09t40732Z' => 'bra', 'BraA10t45233Z' => 'bra', 'C03p38720' => 'bna', 'C03p43680' => 'bna', 'C04p06350' => 'bna', 'C04p31800' => 'bna', 'C05p58680' => 'bna', 'C07p52110' => 'bna', 'C08p35760' => 'bna', 'C09p01050' => 'bna', 'C09p72600' => 'bna', 'CAN.G106.2' => 'can', 'CAN.G1482.1' => 'can', 'CAN.G324.12' => 'can', 'CAN.G388.20' => 'can', 'CAN.G412.7' => 'can', 'CAN.G694.32' => 'can', 'CAN.G92.12' => 'can', 'CANSAT11G2353' => 'cansat', 'CANSAT21G1398' => 'cansat', 'CANSAT56G2456' => 'cansat', 'CANSAT56G3031' => 'cansat', 'CANSAT56G4539' => 'cansat', 'CARHR083680' => 'chi', 'CARHR171190' => 'chi', 'CARHR209010' => 'chi', 'CARHR229680' => 'chi', 'CARHR249490' => 'chi', 'Carub.0003s0844' => 'cru', 'Carub.0005s2755' => 'cru', 'Carub.0006s0322' => 'cru', 'Carub.0006s3586' => 'cru', 'Carub.0007s1855' => 'cru', 'Ca_07808_v3' => 'car', 'Ca_09535_v3' => 'car', 'Ca_10548_v3' => 'car', 'Ca_19913_v3' => 'car', 'Ca_19916_v3' => 'car', 'Ca_19975_v3' => 'car', 'CBR_g22876' => 'cbr', 'CBR_g22879' => 'cbr', 'CBR_g38491' => 'cbr', 'CBR_g54185' => 'cbr', 'CBR_g54190' => 'cbr', 'Cc02_g11020' => 'ccan', 'Cc02_g23920' => 'ccan', 'Cc02_g39860' => 'ccan', 'Cc02_g39870' => 'ccan', 'Cc03_g06760' => 'ccan', 'Cc06_g02450' => 'ccan', 'Cc09_g09450' => 'ccan', 'CDE02G1959' => 'cde', 'CDE04G0600' => 'cde', 'CDE07G1996' => 'cde', 'CDE07G2078' => 'cde', 'CDE11G0611' => 'cde', 'Cfa001683' => 'cfa', 'Cfa001734' => 'cfa', 'Cfa001737' => 'cfa', 'Cfa003751' => 'cfa', 'Cfa012019' => 'cfa', 'Cfa017353' => 'cfa', 'Cfa017732' => 'cfa', 'Cfa022464' => 'cfa', 'Ciclev10012400m.g' => 'ccl', 'Ciclev10021242m.g' => 'ccl', 'Ciclev10021302m.g' => 'ccl', 'Ciclev10021463m.g' => 'ccl', 'Ciclev10032359m.g' => 'ccl', 'CiPaw.01G081000' => 'cil', 'CiPaw.01G262500' => 'cil', 'CiPaw.01G269800' => 'cil', 'CiPaw.02G168400' => 'cil', 'CiPaw.05G119500' => 'cil', 'CiPaw.11G147300' => 'cil', 'ClCG01G003630' => 'cla', 'ClCG05G000510' => 'cla', 'ClCG05G002300' => 'cla', 'ClCG08G007650' => 'cla', 'ClCG10G021250' => 'cla', 'COL.COLO4_06218' => 'col', 'COL.COLO4_12538' => 'col', 'COL.COLO4_14775' => 'col', 'COL.COLO4_23875' => 'col', 'Cpa.g.sc141.16' => 'cpa', 'Cpa.g.sc169.16' => 'cpa', 'Cpa.g.sc244.4' => 'cpa', 'Cpa.g.sc244.5' => 'cpa', 'Cpa.g.sc29.87' => 'cpa', 'Cpa.g.sc53.115' => 'cpa', 'Cre03.g207502' => 'cre', 'Cre06.g277000' => 'cre', 'Cre09.g394050' => 'cre', 'CsaV3_3G007680' => 'csa', 'CsaV3_3G009710' => 'csa', 'CsaV3_3G034790' => 'csa', 'CsaV3_5G003750' => 'csa', 'CsaV3_6G036620' => 'csa', 'CSS0002288' => 'camsi', 'CSS0011250' => 'camsi', 'CSS0021619' => 'camsi', 'CSS0046701' => 'camsi', 'DCAR_006420' => 'dca', 'DCAR_006865' => 'dca', 'DCAR_008558' => 'dca', 'DCAR_028754' => 'dca', 'DCAR_028755' => 'dca', 'Dinv31218' => 'din', 'Dinv32371' => 'din', 'Dinv34250' => 'din', 'Dinv37156' => 'din', 'Dinv43704' => 'din', 'Duzib093G1811' => 'dzi', 'Duzib106G1622' => 'dzi', 'Duzib114G0504' => 'dzi', 'Duzib128G0338' => 'dzi', 'Duzib128G1577' => 'dzi', 'Duzib133G0104' => 'dzi', 'Duzib133G1080' => 'dzi', 'Duzib138G0324' => 'dzi', 'Duzib138G0394' => 'dzi', 'Duzib205G0122' => 'dzi', 'Duzib268G1020' => 'dzi', 'Duzib268G1359' => 'dzi', 'ECA232G3929' => 'eca', 'ECA236G2210' => 'eca', 'ECA236G2287' => 'eca', 'ECA240G4568' => 'eca', 'ECA247G0894' => 'eca', 'EL10Ac1g00200' => 'bvu', 'EL10Ac1g00886' => 'bvu', 'EL10As1g23091' => 'bvu', 'EL10As1g23092' => 'bvu', 'Eucgr.A01284' => 'egr', 'Eucgr.A01285' => 'egr', 'Eucgr.D02456' => 'egr', 'Eucgr.E00018' => 'egr', 'Eucgr.E01439' => 'egr', 'Eucgr.G02859' => 'egr', 'FAN01G0168' => 'fan', 'FAN01G0453' => 'fan', 'FAN01G2761' => 'fan', 'FAN02G1239' => 'fan', 'FAN03G0645' => 'fan', 'FAN03G2707' => 'fan', 'FAN03G2978' => 'fan', 'FAN04G0227' => 'fan', 'FAN06G0091' => 'fan', 'FAN06G1418' => 'fan', 'FAN06G1512' => 'fan', 'FAN06G1986' => 'fan', 'FAN06G2905' => 'fan', 'FAN06G4325' => 'fan', 'FAN08G0033' => 'fan', 'FAN09G0642' => 'fan', 'FAN10G1763' => 'fan', 'FAN10G2026' => 'fan', 'FAN10G2513' => 'fan', 'FAN10G3402' => 'fan', 'FAN10G3564' => 'fan', 'FAN10G3987' => 'fan', 'FAN13G1490' => 'fan', 'FAN14G5857' => 'fan', 'FAN18G1188' => 'fan', 'FvH4_5g00750' => 'fve', 'FvH4_6g13410' => 'fve', 'FvH4_7g11740' => 'fve', 'FvH4_7g17410' => 'fve', 'FvH4_7g18860' => 'fve', 'Glyma.01G099100' => 'gma', 'Glyma.01G142300' => 'gma', 'Glyma.03G025500' => 'gma', 'Glyma.03G069700' => 'gma', 'Glyma.03G260000' => 'gma', 'Glyma.09G269800' => 'gma', 'Glyma.10G208700' => 'gma', 'Glyma.18G220400' => 'gma', 'Glyma.20G182000' => 'gma', 'Gohir.A01G221726' => 'ghi', 'Gohir.A07G134600' => 'ghi', 'Gohir.A07G146000' => 'ghi', 'Gohir.A08G173900' => 'ghi', 'Gohir.A09G194900' => 'ghi', 'Gohir.A10G204100' => 'ghi', 'Gohir.A11G080600' => 'ghi', 'Gohir.A11G327500' => 'ghi', 'Gohir.A12G101800' => 'ghi', 'Gohir.D01G211200' => 'ghi', 'Gohir.D07G139200' => 'ghi', 'Gohir.D07G152100' => 'ghi', 'Gohir.D08G192600' => 'ghi', 'Gohir.D09G189200' => 'ghi', 'Gohir.D10G212000' => 'ghi', 'Gohir.D11G085200' => 'ghi', 'Gohir.D11G346400' => 'ghi', 'Gohir.D12G104800' => 'ghi', 'Gorai.001G151300' => 'gra', 'Gorai.001G174100' => 'gra', 'Gorai.002G257000' => 'gra', 'Gorai.004G202600' => 'gra', 'Gorai.007G090900' => 'gra', 'Gorai.007G376700' => 'gra', 'Gorai.008G114100' => 'gra', 'Gorai.011G237900' => 'gra', 'GSVIVG01005450001' => 'vvi', 'GSVIVG01016232001' => 'vvi', 'GSVIVG01026157001' => 'vvi', 'GSVIVG01027419001' => 'vvi', 'GSVIVG01027631001' => 'vvi', 'GSVIVG01034143001' => 'vvi', 'HanXRQChr03g0093921' => 'han', 'HanXRQChr04g0120001' => 'han', 'HanXRQChr04g0122561' => 'han', 'HanXRQChr09g0246851' => 'han', 'HanXRQChr10g0293311' => 'han', 'HanXRQChr13g0425231' => 'han', 'HanXRQChr16g0532571' => 'han', 'Haze_09050' => 'cav', 'Haze_15715' => 'cav', 'Haze_15716' => 'cav', 'Haze_16803' => 'cav', 'Haze_16850' => 'cav', 'Hma1.2p1_0301F.1_g118655' => 'hma', 'Hma1.2p1_0309F.1_g120590' => 'hma', 'Hma1.2p1_0936F.1_g238900' => 'hma', 'Hma1.2p1_3552F.1_g336740' => 'hma', 'HPP92_003520' => 'vpl', 'HPP92_006628' => 'vpl', 'HPP92_006645' => 'vpl', 'HPP92_014669' => 'vpl', 'HPP92_015077' => 'vpl', 'Hund16742' => 'sun', 'Hund17022' => 'sun', 'Lalb_Chr02g0152131' => 'lal', 'Lalb_Chr05g0225371' => 'lal', 'Lalb_Chr07g0189841' => 'lal', 'Lalb_Chr07g0192961' => 'lal', 'Lalb_Chr12g0208221' => 'lal', 'Lalb_Chr13g0291211' => 'lal', 'Lalb_Chr13g0291781' => 'lal', 'Lalb_Chr18g0044651' => 'lal', 'Lalb_Chr21g0313731' => 'lal', 'Lj1g0022533' => 'lja', 'Lj2A18T50' => 'lonja', 'Lj2A92G93' => 'lonja', 'Lj3A965T73' => 'lonja', 'Lj3g0000673' => 'lja', 'Lj3g0002666' => 'lja', 'Lj4g0016985' => 'lja', 'Lj5g0003625' => 'lja', 'Lj7A529G36' => 'lonja', 'Lj9A569T49' => 'lonja', 'Lj9A604T63' => 'lonja', 'Lsat_1_v5_gn_3_132060' => 'lsa', 'Lsat_1_v5_gn_4_68941' => 'lsa', 'Lsat_1_v5_gn_5_95580' => 'lsa', 'Lsat_1_v5_gn_7_161' => 'lsa', 'Lsat_1_v5_gn_7_7041' => 'lsa', 'Lsat_1_v5_gn_9_33481' => 'lsa', 'Lsat_1_v5_gn_9_68260' => 'lsa', 'Manes.01G073100' => 'mes', 'Manes.01G266300' => 'mes', 'Manes.02G033300' => 'mes', 'Manes.05G017900' => 'mes', 'Manes.05G046100' => 'mes', 'Manes.08G080900' => 'mes', 'Manes.10G049400' => 'mes', 'Mapoly0009s0186' => 'mpo', 'Mapoly0036s0118' => 'mpo', 'Mapoly0101s0046' => 'mpo', 'MBI04_g30218_MAGBIO' => 'mbi', 'MBI04_g35564_MAGBIO' => 'mbi', 'MBI12_g34011_MAGBIO' => 'mbi', 'MBI14_g04655_MAGBIO' => 'mbi', 'MCO07G653' => 'mco', 'MCO10G173' => 'mco', 'MD01G1087100' => 'mdo', 'MD01G1104200' => 'mdo', 'MD02G1205100' => 'mdo', 'MD04G1079200' => 'mdo', 'MD04G1131400' => 'mdo', 'MD07G1121600' => 'mdo', 'MD07G1157300' => 'mdo', 'MD07G1171000' => 'mdo', 'MD12G1144500' => 'mdo', 'Medtr1g094610' => 'mtr', 'Medtr4g021795' => 'mtr', 'Medtr4g023760' => 'mtr', 'Medtr7g118050' => 'mtr', 'MELO3C005582.2' => 'cme', 'MELO3C005989.2' => 'cme', 'MELO3C006192.2' => 'cme', 'MELO3C009248.2' => 'cme', 'MELO3C019817.2' => 'cme', 'Migut.B01625' => 'egut', 'Migut.B01915' => 'egut', 'Migut.F01721' => 'egut', 'Migut.J00314' => 'egut', 'MSTRG.20742' => 'ama', 'MSTRG.8134' => 'ama', 'Nitab4.5_0000096g0010' => 'nta', 'Nitab4.5_0000202g0030' => 'nta', 'Nitab4.5_0000216g0370' => 'nta', 'Nitab4.5_0000457g0230' => 'nta', 'Nitab4.5_0001702g0170' => 'nta', 'Nitab4.5_0003607g0010' => 'nta', 'Nitab4.5_0004917g0020' => 'nta', 'Nitab4.5_0007059g0010' => 'nta', 'Nitab4.5_0007184g0010' => 'nta', 'Nitab4.5_0007346g0020' => 'nta', 'Nn1g00410' => 'nnu', 'Nn1g01252' => 'nnu', 'Nn2g11168' => 'nnu', 'Nn2g13403' => 'nnu', 'Nn2g13760' => 'nnu', 'Nn4g26380' => 'nnu', 'Oeu000806.2' => 'oeu', 'Oeu005788.1' => 'oeu', 'Oeu006900.3' => 'oeu', 'Oeu007797.1' => 'oeu', 'Oeu011932.1' => 'oeu', 'Oeu022739.1' => 'oeu', 'Oeu037918.1' => 'oeu', 'Oeu055490.2' => 'oeu', 'Os01g0844400' => 'osa', 'Os02g0819100' => 'osa', 'Os03g0804300' => 'osa', 'Os05g0458000' => 'osa', 'Os07g0467800' => 'osa', 'Os12g0602200' => 'osa', 'Peaxi162Scf00013g03444' => 'pax', 'Peaxi162Scf00094g01120' => 'pax', 'Peaxi162Scf00191g01211' => 'pax', 'Peaxi162Scf00238g01110' => 'pax', 'Peaxi162Scf00330g00719' => 'pax', 'Peaxi162Scf00627g00018' => 'pax', 'PGR031G2686' => 'pgr', 'PGR042G0809' => 'pgr', 'PGR142G0193' => 'pgr', 'PGSC0003DMG400011066' => 'stu', 'PGSC0003DMG400012041' => 'stu', 'PGSC0003DMG400013678' => 'stu', 'PGSC0003DMG400023477' => 'stu', 'PGSC0003DMG400025956' => 'stu', 'PGSC0003DMG401019151' => 'stu', 'Phvul.006G116400' => 'pvu', 'Phvul.007G097300' => 'pvu', 'Phvul.010G015000' => 'pvu', 'Phvul.010G083900' => 'pvu', 'Potri.001G117100' => 'ptr', 'Potri.002G147300' => 'ptr', 'Potri.003G115600' => 'ptr', 'Potri.006G087400' => 'ptr', 'Potri.010G226100' => 'ptr', 'Potri.014G069200' => 'ptr', 'Potri.014G104000' => 'ptr', 'Potri.016G100200' => 'ptr', 'Pp3c10_20450' => 'ppa', 'Pp3c1_42400' => 'ppa', 'Pp3c3_24390' => 'ppa', 'Pp3c3_2860' => 'ppa', 'PRCOL_00003193' => 'pco', 'Prupe.2G144500' => 'ppe', 'Prupe.2G195700' => 'ppe', 'Prupe.2G209800' => 'ppe', 'Prupe.5G080000' => 'ppe', 'Prupe.6G257900' => 'ppe', 'Psat3g001160' => 'psa', 'Psat6g181880' => 'psa', 'Psat7g233720' => 'psa', 'PSO063G7587' => 'pso', 'PSO339G2145' => 'pso', 'PSO339G3369' => 'pso', 'PSO478G2747' => 'pso', 'PSO513G0140' => 'pso', 'PSO782G1614' => 'pso', 'PSO782G4889' => 'pso', 'PSO782G5485' => 'pso', 'PSO801G0241' => 'pso', 'QL07p048854' => 'qlo', 'QL08p046745' => 'qlo', 'QL08p052606' => 'qlo', 'QL08p053414' => 'qlo', 'QL08p054868' => 'qlo', 'RcHm_v2.0_Chr1g0350251' => 'rch', 'RcHm_v2.0_Chr1g0360851' => 'rch', 'RcHm_v2.0_Chr1g0362791' => 'rch', 'RcHm_v2.0_Chr3g0466281' => 'rch', 'RcHm_v2.0_Chr7g0201481' => 'rch', 'Rhsim01G0148600' => 'rsi', 'Rhsim05G0194400' => 'rsi', 'Rhsim07G0000700' => 'rsi', 'Rhsim07G0000800' => 'rsi', 'Rhsim07G0027900' => 'rsi', 'Rhsim09G0149500' => 'rsi', 'RhsimUnG0186900' => 'rsi', 'Sabra01G0089900' => 'sbr', 'Sabra02G0114700' => 'sbr', 'Sabra02G0116300' => 'sbr', 'Sabra03G0080100' => 'sbr', 'Sabra08G0024300' => 'sbr', 'Sabra10G0174300' => 'sbr', 'Sabra14G0048900' => 'sbr', 'Sabra14G0076500' => 'sbr', 'SalBow5G2513' => 'sbo', 'Sc01g0002300' => 'sci', 'Sc01g0004450' => 'sci', 'Sc06g0001680' => 'sci', 'Sc23g0003580' => 'sci', 'Sed0000913' => 'sed', 'Sed0001655' => 'sed', 'Sed0007745' => 'sed', 'Sed0010951' => 'sed', 'Sed0017599' => 'sed', 'Sed0021405' => 'sed', 'Sed0022810' => 'sed', 'SEGI_07099' => 'sgi', 'SEGI_11931' => 'sgi', 'SEGI_13187' => 'sgi', 'SEGI_29958' => 'sgi', 'SEGI_36351' => 'sgi', 'SGA_v2.0_scaffold126G33770' => 'sas', 'SGA_v2.0_scaffold153G37003' => 'sas', 'SGA_v2.0_scaffold2G01359' => 'sas', 'SGA_v2.0_scaffold5G03064' => 'sas', 'SGA_v2.0_scaffold95G28903' => 'sas', 'SHI12701' => 'shi', 'SHI26410' => 'shi', 'SHI38997' => 'shi', 'SHI53759' => 'shi', 'SHI53886' => 'shi', 'SHI54714' => 'shi', 'SMO011G0041' => 'smo', 'SMO146G0251' => 'smo', 'SMO160G0004' => 'smo', 'SMO174G0057' => 'smo', 'SMO244G0089' => 'smo', 'SMO296G0011' => 'smo', 'Solyc01g091280.3' => 'sly', 'Solyc05g047610.3' => 'sly', 'Solyc05g047640.3' => 'sly', 'Solyc05g055630.3' => 'sly', 'Solyc10g018160.2' => 'sly', 'Solyc10g084820.2' => 'sly', 'Solyc10g086565.2' => 'sly', 'Sopen01g037030' => 'spe', 'Sopen05g027920' => 'spe', 'Sopen05g034070' => 'spe', 'Sopen10g007260' => 'spe', 'Sopen10g034260' => 'spe', 'Sopen10g035950' => 'spe', 'Sp3g07710' => 'spa', 'Sp4g27420' => 'spa', 'Sp5g02450' => 'spa', 'Sp6g01280' => 'spa', 'Sp6g38480' => 'spa', 'Sp7g20780' => 'spa', 'TAR374G1413' => 'tar', 'TAR623G1777' => 'tar', 'TAR629G2370' => 'tar', 'TAR633G1759' => 'tar', 'TAR636G3387' => 'tar', 'THA.LOC104802447' => 'tha', 'THA.LOC104813916' => 'tha', 'THA.LOC104816423' => 'tha', 'THA.LOC104817246' => 'tha', 'THA.LOC104825895' => 'tha', 'Thecc.01G335200' => 'tca', 'Thecc.01G377400' => 'tca', 'Thecc.03G262200' => 'tca', 'Thecc.05G036800' => 'tca', 'Thecc.10G080500' => 'tca', 'Thecc.10G080800' => 'tca', 'Thhalv10001560m.g' => 'esa', 'Thhalv10006120m.g' => 'esa', 'Thhalv10014375m.g' => 'esa', 'Thhalv10021264m.g' => 'esa', 'Thhalv10028856m.g' => 'esa', 'TPR.G1914' => 'tpr', 'TPR.G4757' => 'tpr', 'TPR.G5595' => 'tpr', 'TWI14G0952' => 'twi', 'TWI14G1307' => 'twi', 'TWI38G2143' => 'twi', 'TWI59G0826' => 'twi', 'TWI77G0527' => 'twi', 'TWI81G0150' => 'twi', 'unitig_21.g21018' => 'ugi', 'unitig_26.g9725' => 'ugi', 'unitig_744.g24653' => 'ugi', 'unitig_749.g13778' => 'ugi', 'unitig_899.g15035' => 'ugi', 'vmacro04296' => 'vma', 'vmacro04852' => 'vma', 'vmacro13404' => 'vma', 'vmacro20169' => 'vma', 'vmacro21014' => 'vma', 'VMungo0331G0237' => 'vmu', 'VMungo0331G0706' => 'vmu', 'VMungo0331G1361' => 'vmu', 'VMungo0331G1489' => 'vmu', 'VMungo0540G1037' => 'vmu', 'VMungo0720G2487' => 'vmu', 'VMungo0720G2721' => 'vmu', 'Zm00001eb086860' => 'zma', 'Zm00001eb104760' => 'zma', 'Zm00001eb148220' => 'zma', 'Zm00001eb259030' => 'zma', 'Zm00001eb289590' => 'zma', 'Zm00001eb420150' => 'zma' ) $gf_id = 'HOM05D000968' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000968' ) $data_identifier = 'HOM05D000968' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 19, 'bol' => (int) 9, 'bra' => (int) 12, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 5, 'ccan' => (int) 7, 'cde' => (int) 5, 'cfa' => (int) 8, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 4, 'dca' => (int) 5, 'din' => (int) 5, 'dzi' => (int) 12, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 25, 'fve' => (int) 5, 'gma' => (int) 9, 'ghi' => (int) 18, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 7, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 5, 'sun' => (int) 2, 'lal' => (int) 9, 'lja' => (int) 5, 'lonja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 9, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 2, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 3, 'stu' => (int) 6, 'pvu' => (int) 4, 'ptr' => (int) 8, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 3, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 1, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 5, 'sas' => (int) 5, 'shi' => (int) 6, 'smo' => (int) 6, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 3, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420150' $species_info = array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ) $local_species = 'esa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000968', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p31690' => 'bna', 'A03p36040' => 'bna', 'A03p53730' => 'bna', 'A04p01410' => 'bna', 'A05p05420' => 'bna', 'A05p39630' => 'bna', 'A05p39640' => 'bna', 'A09p00970' => 'bna', 'A09p53060' => 'bna', 'A10p31890' => 'bna', 'Aa31LG10G15040' => 'aar', 'Aa31LG1G21090' => 'aar', 'Aa31LG1G26900' => 'aar', 'Aa31LG3G1820' => 'aar', 'Aa31LG5G1100' => 'aar', 'Aa31LG6G4740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2265' => 'aag', 'Actinidia07998' => 'ach', 'Actinidia11266' => 'ach', 'Actinidia12682' => 'ach', 'Actinidia26479' => 'ach', 'Actinidia31406' => 'ach', 'Actinidia32437' => 'ach', 'Actinidia38862' => 'ach', 'Ah.05g174230' => 'amhyb', 'Ah.05g179070' => 'amhyb', 'Ah.05g179090' => 'amhyb', 'Ah.12g059950' => 'amhyb', 'AL3G20480' => 'aly', 'AL4G44520' => 'aly', 'AL5G43110' => 'aly', 'AL6G13890' => 'aly', 'AL6G52620' => 'aly', 'AL7G30830' => 'aly', 'Aqoxy1G00899' => 'aox', 'Aqoxy5G04333' => 'aox', 'Aqoxy7G00641' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3IZ0NN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4EF6AW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W9P8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79GA3M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C43NQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFCU6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G95YVJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCHK29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LU1UG8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX91RN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGB4B1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8DA0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9H7JI' => 'arhy', 'AT3G09320' => 'ath', 'AT3G60800' => 'ath', 'AT4G00840' => 'ath', 'AT4G22750' => 'ath', 'AT5G04270' => 'ath', 'ATR0090G003' => 'atr', 'ATR0559G349' => 'atr', 'ATR0680G261' => 'atr', 'ATR0810G048' => 'atr', 'Atru.chr12.831' => 'acertr', 'Atru.chr5.303' => 'acertr', 'Atru.chr5.748' => 'acertr', 'Atru.chr8.1999' => 'acertr', 'Atru.chr9.1436' => 'acertr', 'AUR62004211' => 'cqu', 'AUR62004548' => 'cqu', 'AUR62013637' => 'cqu', 'AUR62022662' => 'cqu', 'AUR62025777' => 'cqu', 'AUR62042386' => 'cqu', 'BcaB01g02310' => 'bca', 'BcaB01g06062' => 'bca', 'BcaB02g08975' => 'bca', 'BcaB02g08980' => 'bca', 'BcaC01g04228' => 'bca', 'BcaC01g06830' => 'bca', 'BcaC02g10186' => 'bca', 'BcaC02g12214' => 'bca', 'BcaC04g24101' => 'bca', 'BcaC05g29520' => 'bca', 'BcaC05g29661' => 'bca', 'BcaC06g32130' => 'bca', 'BcaC06g32131' => 'bca', 'BcaC07g40601' => 'bca', 'BcaC07g42641' => 'bca', 'BcaNung01038' => 'bca', 'BcaNung01676' => 'bca', 'BcaNung02480' => 'bca', 'BcaNung07376' => 'bca', 'BolC3t16146H' => 'bol', 'BolC3t16637H' => 'bol', 'BolC4t22257H' => 'bol', 'BolC4t24728H' => 'bol', 'BolC5t34517H' => 'bol', 'BolC7t45703H' => 'bol', 'BolC8t51166H' => 'bol', 'BolC9t53038H' => 'bol', 'BolC9t60000H' => 'bol', 'BraA01t01345Z' => 'bra', 'BraA01t01346Z' => 'bra', 'BraA01t01348Z' => 'bra', 'BraA03t12347Z' => 'bra', 'BraA03t12775Z' => 'bra', 'BraA03t14439Z' => 'bra', 'BraA04t15860Z' => 'bra', 'BraA05t19511Z' => 'bra', 'BraA05t22746Z' => 'bra', 'BraA09t35767Z' => 'bra', 'BraA09t40732Z' => 'bra', 'BraA10t45233Z' => 'bra', 'C03p38720' => 'bna', 'C03p43680' => 'bna', 'C04p06350' => 'bna', 'C04p31800' => 'bna', 'C05p58680' => 'bna', 'C07p52110' => 'bna', 'C08p35760' => 'bna', 'C09p01050' => 'bna', 'C09p72600' => 'bna', 'CAN.G106.2' => 'can', 'CAN.G1482.1' => 'can', 'CAN.G324.12' => 'can', 'CAN.G388.20' => 'can', 'CAN.G412.7' => 'can', 'CAN.G694.32' => 'can', 'CAN.G92.12' => 'can', 'CANSAT11G2353' => 'cansat', 'CANSAT21G1398' => 'cansat', 'CANSAT56G2456' => 'cansat', 'CANSAT56G3031' => 'cansat', 'CANSAT56G4539' => 'cansat', 'CARHR083680' => 'chi', 'CARHR171190' => 'chi', 'CARHR209010' => 'chi', 'CARHR229680' => 'chi', 'CARHR249490' => 'chi', 'Carub.0003s0844' => 'cru', 'Carub.0005s2755' => 'cru', 'Carub.0006s0322' => 'cru', 'Carub.0006s3586' => 'cru', 'Carub.0007s1855' => 'cru', 'Ca_07808_v3' => 'car', 'Ca_09535_v3' => 'car', 'Ca_10548_v3' => 'car', 'Ca_19913_v3' => 'car', 'Ca_19916_v3' => 'car', 'Ca_19975_v3' => 'car', 'CBR_g22876' => 'cbr', 'CBR_g22879' => 'cbr', 'CBR_g38491' => 'cbr', 'CBR_g54185' => 'cbr', 'CBR_g54190' => 'cbr', 'Cc02_g11020' => 'ccan', 'Cc02_g23920' => 'ccan', 'Cc02_g39860' => 'ccan', 'Cc02_g39870' => 'ccan', 'Cc03_g06760' => 'ccan', 'Cc06_g02450' => 'ccan', 'Cc09_g09450' => 'ccan', 'CDE02G1959' => 'cde', 'CDE04G0600' => 'cde', 'CDE07G1996' => 'cde', 'CDE07G2078' => 'cde', 'CDE11G0611' => 'cde', 'Cfa001683' => 'cfa', 'Cfa001734' => 'cfa', 'Cfa001737' => 'cfa', 'Cfa003751' => 'cfa', 'Cfa012019' => 'cfa', 'Cfa017353' => 'cfa', 'Cfa017732' => 'cfa', 'Cfa022464' => 'cfa', 'Ciclev10012400m.g' => 'ccl', 'Ciclev10021242m.g' => 'ccl', 'Ciclev10021302m.g' => 'ccl', 'Ciclev10021463m.g' => 'ccl', 'Ciclev10032359m.g' => 'ccl', 'CiPaw.01G081000' => 'cil', 'CiPaw.01G262500' => 'cil', 'CiPaw.01G269800' => 'cil', 'CiPaw.02G168400' => 'cil', 'CiPaw.05G119500' => 'cil', 'CiPaw.11G147300' => 'cil', 'ClCG01G003630' => 'cla', 'ClCG05G000510' => 'cla', 'ClCG05G002300' => 'cla', 'ClCG08G007650' => 'cla', 'ClCG10G021250' => 'cla', 'COL.COLO4_06218' => 'col', 'COL.COLO4_12538' => 'col', 'COL.COLO4_14775' => 'col', 'COL.COLO4_23875' => 'col', 'Cpa.g.sc141.16' => 'cpa', 'Cpa.g.sc169.16' => 'cpa', 'Cpa.g.sc244.4' => 'cpa', 'Cpa.g.sc244.5' => 'cpa', 'Cpa.g.sc29.87' => 'cpa', 'Cpa.g.sc53.115' => 'cpa', 'Cre03.g207502' => 'cre', 'Cre06.g277000' => 'cre', 'Cre09.g394050' => 'cre', 'CsaV3_3G007680' => 'csa', 'CsaV3_3G009710' => 'csa', 'CsaV3_3G034790' => 'csa', 'CsaV3_5G003750' => 'csa', 'CsaV3_6G036620' => 'csa', 'CSS0002288' => 'camsi', 'CSS0011250' => 'camsi', 'CSS0021619' => 'camsi', 'CSS0046701' => 'camsi', 'DCAR_006420' => 'dca', 'DCAR_006865' => 'dca', 'DCAR_008558' => 'dca', 'DCAR_028754' => 'dca', 'DCAR_028755' => 'dca', 'Dinv31218' => 'din', 'Dinv32371' => 'din', 'Dinv34250' => 'din', 'Dinv37156' => 'din', 'Dinv43704' => 'din', 'Duzib093G1811' => 'dzi', 'Duzib106G1622' => 'dzi', 'Duzib114G0504' => 'dzi', 'Duzib128G0338' => 'dzi', 'Duzib128G1577' => 'dzi', 'Duzib133G0104' => 'dzi', 'Duzib133G1080' => 'dzi', 'Duzib138G0324' => 'dzi', 'Duzib138G0394' => 'dzi', 'Duzib205G0122' => 'dzi', 'Duzib268G1020' => 'dzi', 'Duzib268G1359' => 'dzi', 'ECA232G3929' => 'eca', 'ECA236G2210' => 'eca', 'ECA236G2287' => 'eca', 'ECA240G4568' => 'eca', 'ECA247G0894' => 'eca', 'EL10Ac1g00200' => 'bvu', 'EL10Ac1g00886' => 'bvu', 'EL10As1g23091' => 'bvu', 'EL10As1g23092' => 'bvu', 'Eucgr.A01284' => 'egr', 'Eucgr.A01285' => 'egr', 'Eucgr.D02456' => 'egr', 'Eucgr.E00018' => 'egr', 'Eucgr.E01439' => 'egr', 'Eucgr.G02859' => 'egr', 'FAN01G0168' => 'fan', 'FAN01G0453' => 'fan', 'FAN01G2761' => 'fan', 'FAN02G1239' => 'fan', 'FAN03G0645' => 'fan', 'FAN03G2707' => 'fan', 'FAN03G2978' => 'fan', 'FAN04G0227' => 'fan', 'FAN06G0091' => 'fan', 'FAN06G1418' => 'fan', 'FAN06G1512' => 'fan', 'FAN06G1986' => 'fan', 'FAN06G2905' => 'fan', 'FAN06G4325' => 'fan', 'FAN08G0033' => 'fan', 'FAN09G0642' => 'fan', 'FAN10G1763' => 'fan', 'FAN10G2026' => 'fan', 'FAN10G2513' => 'fan', 'FAN10G3402' => 'fan', 'FAN10G3564' => 'fan', 'FAN10G3987' => 'fan', 'FAN13G1490' => 'fan', 'FAN14G5857' => 'fan', 'FAN18G1188' => 'fan', 'FvH4_5g00750' => 'fve', 'FvH4_6g13410' => 'fve', 'FvH4_7g11740' => 'fve', 'FvH4_7g17410' => 'fve', 'FvH4_7g18860' => 'fve', 'Glyma.01G099100' => 'gma', 'Glyma.01G142300' => 'gma', 'Glyma.03G025500' => 'gma', 'Glyma.03G069700' => 'gma', 'Glyma.03G260000' => 'gma', 'Glyma.09G269800' => 'gma', 'Glyma.10G208700' => 'gma', 'Glyma.18G220400' => 'gma', 'Glyma.20G182000' => 'gma', 'Gohir.A01G221726' => 'ghi', 'Gohir.A07G134600' => 'ghi', 'Gohir.A07G146000' => 'ghi', 'Gohir.A08G173900' => 'ghi', 'Gohir.A09G194900' => 'ghi', 'Gohir.A10G204100' => 'ghi', 'Gohir.A11G080600' => 'ghi', 'Gohir.A11G327500' => 'ghi', 'Gohir.A12G101800' => 'ghi', 'Gohir.D01G211200' => 'ghi', 'Gohir.D07G139200' => 'ghi', 'Gohir.D07G152100' => 'ghi', 'Gohir.D08G192600' => 'ghi', 'Gohir.D09G189200' => 'ghi', 'Gohir.D10G212000' => 'ghi', 'Gohir.D11G085200' => 'ghi', 'Gohir.D11G346400' => 'ghi', 'Gohir.D12G104800' => 'ghi', 'Gorai.001G151300' => 'gra', 'Gorai.001G174100' => 'gra', 'Gorai.002G257000' => 'gra', 'Gorai.004G202600' => 'gra', 'Gorai.007G090900' => 'gra', 'Gorai.007G376700' => 'gra', 'Gorai.008G114100' => 'gra', 'Gorai.011G237900' => 'gra', 'GSVIVG01005450001' => 'vvi', 'GSVIVG01016232001' => 'vvi', 'GSVIVG01026157001' => 'vvi', 'GSVIVG01027419001' => 'vvi', 'GSVIVG01027631001' => 'vvi', 'GSVIVG01034143001' => 'vvi', 'HanXRQChr03g0093921' => 'han', 'HanXRQChr04g0120001' => 'han', 'HanXRQChr04g0122561' => 'han', 'HanXRQChr09g0246851' => 'han', 'HanXRQChr10g0293311' => 'han', 'HanXRQChr13g0425231' => 'han', 'HanXRQChr16g0532571' => 'han', 'Haze_09050' => 'cav', 'Haze_15715' => 'cav', 'Haze_15716' => 'cav', 'Haze_16803' => 'cav', 'Haze_16850' => 'cav', 'Hma1.2p1_0301F.1_g118655' => 'hma', 'Hma1.2p1_0309F.1_g120590' => 'hma', 'Hma1.2p1_0936F.1_g238900' => 'hma', 'Hma1.2p1_3552F.1_g336740' => 'hma', 'HPP92_003520' => 'vpl', 'HPP92_006628' => 'vpl', 'HPP92_006645' => 'vpl', 'HPP92_014669' => 'vpl', 'HPP92_015077' => 'vpl', 'Hund16742' => 'sun', 'Hund17022' => 'sun', 'Lalb_Chr02g0152131' => 'lal', 'Lalb_Chr05g0225371' => 'lal', 'Lalb_Chr07g0189841' => 'lal', 'Lalb_Chr07g0192961' => 'lal', 'Lalb_Chr12g0208221' => 'lal', 'Lalb_Chr13g0291211' => 'lal', 'Lalb_Chr13g0291781' => 'lal', 'Lalb_Chr18g0044651' => 'lal', 'Lalb_Chr21g0313731' => 'lal', 'Lj1g0022533' => 'lja', 'Lj2A18T50' => 'lonja', 'Lj2A92G93' => 'lonja', 'Lj3A965T73' => 'lonja', 'Lj3g0000673' => 'lja', 'Lj3g0002666' => 'lja', 'Lj4g0016985' => 'lja', 'Lj5g0003625' => 'lja', 'Lj7A529G36' => 'lonja', 'Lj9A569T49' => 'lonja', 'Lj9A604T63' => 'lonja', 'Lsat_1_v5_gn_3_132060' => 'lsa', 'Lsat_1_v5_gn_4_68941' => 'lsa', 'Lsat_1_v5_gn_5_95580' => 'lsa', 'Lsat_1_v5_gn_7_161' => 'lsa', 'Lsat_1_v5_gn_7_7041' => 'lsa', 'Lsat_1_v5_gn_9_33481' => 'lsa', 'Lsat_1_v5_gn_9_68260' => 'lsa', 'Manes.01G073100' => 'mes', 'Manes.01G266300' => 'mes', 'Manes.02G033300' => 'mes', 'Manes.05G017900' => 'mes', 'Manes.05G046100' => 'mes', 'Manes.08G080900' => 'mes', 'Manes.10G049400' => 'mes', 'Mapoly0009s0186' => 'mpo', 'Mapoly0036s0118' => 'mpo', 'Mapoly0101s0046' => 'mpo', 'MBI04_g30218_MAGBIO' => 'mbi', 'MBI04_g35564_MAGBIO' => 'mbi', 'MBI12_g34011_MAGBIO' => 'mbi', 'MBI14_g04655_MAGBIO' => 'mbi', 'MCO07G653' => 'mco', 'MCO10G173' => 'mco', 'MD01G1087100' => 'mdo', 'MD01G1104200' => 'mdo', 'MD02G1205100' => 'mdo', 'MD04G1079200' => 'mdo', 'MD04G1131400' => 'mdo', 'MD07G1121600' => 'mdo', 'MD07G1157300' => 'mdo', 'MD07G1171000' => 'mdo', 'MD12G1144500' => 'mdo', 'Medtr1g094610' => 'mtr', 'Medtr4g021795' => 'mtr', 'Medtr4g023760' => 'mtr', 'Medtr7g118050' => 'mtr', 'MELO3C005582.2' => 'cme', 'MELO3C005989.2' => 'cme', 'MELO3C006192.2' => 'cme', 'MELO3C009248.2' => 'cme', 'MELO3C019817.2' => 'cme', 'Migut.B01625' => 'egut', 'Migut.B01915' => 'egut', 'Migut.F01721' => 'egut', 'Migut.J00314' => 'egut', 'MSTRG.20742' => 'ama', 'MSTRG.8134' => 'ama', 'Nitab4.5_0000096g0010' => 'nta', 'Nitab4.5_0000202g0030' => 'nta', 'Nitab4.5_0000216g0370' => 'nta', 'Nitab4.5_0000457g0230' => 'nta', 'Nitab4.5_0001702g0170' => 'nta', 'Nitab4.5_0003607g0010' => 'nta', 'Nitab4.5_0004917g0020' => 'nta', 'Nitab4.5_0007059g0010' => 'nta', 'Nitab4.5_0007184g0010' => 'nta', 'Nitab4.5_0007346g0020' => 'nta', 'Nn1g00410' => 'nnu', 'Nn1g01252' => 'nnu', 'Nn2g11168' => 'nnu', 'Nn2g13403' => 'nnu', 'Nn2g13760' => 'nnu', 'Nn4g26380' => 'nnu', 'Oeu000806.2' => 'oeu', 'Oeu005788.1' => 'oeu', 'Oeu006900.3' => 'oeu', 'Oeu007797.1' => 'oeu', 'Oeu011932.1' => 'oeu', 'Oeu022739.1' => 'oeu', 'Oeu037918.1' => 'oeu', 'Oeu055490.2' => 'oeu', 'Os01g0844400' => 'osa', 'Os02g0819100' => 'osa', 'Os03g0804300' => 'osa', 'Os05g0458000' => 'osa', 'Os07g0467800' => 'osa', 'Os12g0602200' => 'osa', 'Peaxi162Scf00013g03444' => 'pax', 'Peaxi162Scf00094g01120' => 'pax', 'Peaxi162Scf00191g01211' => 'pax', 'Peaxi162Scf00238g01110' => 'pax', 'Peaxi162Scf00330g00719' => 'pax', 'Peaxi162Scf00627g00018' => 'pax', 'PGR031G2686' => 'pgr', 'PGR042G0809' => 'pgr', 'PGR142G0193' => 'pgr', 'PGSC0003DMG400011066' => 'stu', 'PGSC0003DMG400012041' => 'stu', 'PGSC0003DMG400013678' => 'stu', 'PGSC0003DMG400023477' => 'stu', 'PGSC0003DMG400025956' => 'stu', 'PGSC0003DMG401019151' => 'stu', 'Phvul.006G116400' => 'pvu', 'Phvul.007G097300' => 'pvu', 'Phvul.010G015000' => 'pvu', 'Phvul.010G083900' => 'pvu', 'Potri.001G117100' => 'ptr', 'Potri.002G147300' => 'ptr', 'Potri.003G115600' => 'ptr', 'Potri.006G087400' => 'ptr', 'Potri.010G226100' => 'ptr', 'Potri.014G069200' => 'ptr', 'Potri.014G104000' => 'ptr', 'Potri.016G100200' => 'ptr', 'Pp3c10_20450' => 'ppa', 'Pp3c1_42400' => 'ppa', 'Pp3c3_24390' => 'ppa', 'Pp3c3_2860' => 'ppa', 'PRCOL_00003193' => 'pco', 'Prupe.2G144500' => 'ppe', 'Prupe.2G195700' => 'ppe', 'Prupe.2G209800' => 'ppe', 'Prupe.5G080000' => 'ppe', 'Prupe.6G257900' => 'ppe', 'Psat3g001160' => 'psa', 'Psat6g181880' => 'psa', 'Psat7g233720' => 'psa', 'PSO063G7587' => 'pso', 'PSO339G2145' => 'pso', 'PSO339G3369' => 'pso', 'PSO478G2747' => 'pso', 'PSO513G0140' => 'pso', 'PSO782G1614' => 'pso', 'PSO782G4889' => 'pso', 'PSO782G5485' => 'pso', 'PSO801G0241' => 'pso', 'QL07p048854' => 'qlo', 'QL08p046745' => 'qlo', 'QL08p052606' => 'qlo', 'QL08p053414' => 'qlo', 'QL08p054868' => 'qlo', 'RcHm_v2.0_Chr1g0350251' => 'rch', 'RcHm_v2.0_Chr1g0360851' => 'rch', 'RcHm_v2.0_Chr1g0362791' => 'rch', 'RcHm_v2.0_Chr3g0466281' => 'rch', 'RcHm_v2.0_Chr7g0201481' => 'rch', 'Rhsim01G0148600' => 'rsi', 'Rhsim05G0194400' => 'rsi', 'Rhsim07G0000700' => 'rsi', 'Rhsim07G0000800' => 'rsi', 'Rhsim07G0027900' => 'rsi', 'Rhsim09G0149500' => 'rsi', 'RhsimUnG0186900' => 'rsi', 'Sabra01G0089900' => 'sbr', 'Sabra02G0114700' => 'sbr', 'Sabra02G0116300' => 'sbr', 'Sabra03G0080100' => 'sbr', 'Sabra08G0024300' => 'sbr', 'Sabra10G0174300' => 'sbr', 'Sabra14G0048900' => 'sbr', 'Sabra14G0076500' => 'sbr', 'SalBow5G2513' => 'sbo', 'Sc01g0002300' => 'sci', 'Sc01g0004450' => 'sci', 'Sc06g0001680' => 'sci', 'Sc23g0003580' => 'sci', 'Sed0000913' => 'sed', 'Sed0001655' => 'sed', 'Sed0007745' => 'sed', 'Sed0010951' => 'sed', 'Sed0017599' => 'sed', 'Sed0021405' => 'sed', 'Sed0022810' => 'sed', 'SEGI_07099' => 'sgi', 'SEGI_11931' => 'sgi', 'SEGI_13187' => 'sgi', 'SEGI_29958' => 'sgi', 'SEGI_36351' => 'sgi', 'SGA_v2.0_scaffold126G33770' => 'sas', 'SGA_v2.0_scaffold153G37003' => 'sas', 'SGA_v2.0_scaffold2G01359' => 'sas', 'SGA_v2.0_scaffold5G03064' => 'sas', 'SGA_v2.0_scaffold95G28903' => 'sas', 'SHI12701' => 'shi', 'SHI26410' => 'shi', 'SHI38997' => 'shi', 'SHI53759' => 'shi', 'SHI53886' => 'shi', 'SHI54714' => 'shi', 'SMO011G0041' => 'smo', 'SMO146G0251' => 'smo', 'SMO160G0004' => 'smo', 'SMO174G0057' => 'smo', 'SMO244G0089' => 'smo', 'SMO296G0011' => 'smo', 'Solyc01g091280.3' => 'sly', 'Solyc05g047610.3' => 'sly', 'Solyc05g047640.3' => 'sly', 'Solyc05g055630.3' => 'sly', 'Solyc10g018160.2' => 'sly', 'Solyc10g084820.2' => 'sly', 'Solyc10g086565.2' => 'sly', 'Sopen01g037030' => 'spe', 'Sopen05g027920' => 'spe', 'Sopen05g034070' => 'spe', 'Sopen10g007260' => 'spe', 'Sopen10g034260' => 'spe', 'Sopen10g035950' => 'spe', 'Sp3g07710' => 'spa', 'Sp4g27420' => 'spa', 'Sp5g02450' => 'spa', 'Sp6g01280' => 'spa', 'Sp6g38480' => 'spa', 'Sp7g20780' => 'spa', 'TAR374G1413' => 'tar', 'TAR623G1777' => 'tar', 'TAR629G2370' => 'tar', 'TAR633G1759' => 'tar', 'TAR636G3387' => 'tar', 'THA.LOC104802447' => 'tha', 'THA.LOC104813916' => 'tha', 'THA.LOC104816423' => 'tha', 'THA.LOC104817246' => 'tha', 'THA.LOC104825895' => 'tha', 'Thecc.01G335200' => 'tca', 'Thecc.01G377400' => 'tca', 'Thecc.03G262200' => 'tca', 'Thecc.05G036800' => 'tca', 'Thecc.10G080500' => 'tca', 'Thecc.10G080800' => 'tca', 'Thhalv10001560m.g' => 'esa', 'Thhalv10006120m.g' => 'esa', 'Thhalv10014375m.g' => 'esa', 'Thhalv10021264m.g' => 'esa', 'Thhalv10028856m.g' => 'esa', 'TPR.G1914' => 'tpr', 'TPR.G4757' => 'tpr', 'TPR.G5595' => 'tpr', 'TWI14G0952' => 'twi', 'TWI14G1307' => 'twi', 'TWI38G2143' => 'twi', 'TWI59G0826' => 'twi', 'TWI77G0527' => 'twi', 'TWI81G0150' => 'twi', 'unitig_21.g21018' => 'ugi', 'unitig_26.g9725' => 'ugi', 'unitig_744.g24653' => 'ugi', 'unitig_749.g13778' => 'ugi', 'unitig_899.g15035' => 'ugi', 'vmacro04296' => 'vma', 'vmacro04852' => 'vma', 'vmacro13404' => 'vma', 'vmacro20169' => 'vma', 'vmacro21014' => 'vma', 'VMungo0331G0237' => 'vmu', 'VMungo0331G0706' => 'vmu', 'VMungo0331G1361' => 'vmu', 'VMungo0331G1489' => 'vmu', 'VMungo0540G1037' => 'vmu', 'VMungo0720G2487' => 'vmu', 'VMungo0720G2721' => 'vmu', 'Zm00001eb086860' => 'zma', 'Zm00001eb104760' => 'zma', 'Zm00001eb148220' => 'zma', 'Zm00001eb259030' => 'zma', 'Zm00001eb289590' => 'zma', 'Zm00001eb420150' => 'zma' ), 'gf_id' => 'HOM05D000968', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000968' ), 'data_identifier' => 'HOM05D000968', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000968', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p31690' => 'bna', 'A03p36040' => 'bna', 'A03p53730' => 'bna', 'A04p01410' => 'bna', 'A05p05420' => 'bna', 'A05p39630' => 'bna', 'A05p39640' => 'bna', 'A09p00970' => 'bna', 'A09p53060' => 'bna', 'A10p31890' => 'bna', 'Aa31LG10G15040' => 'aar', 'Aa31LG1G21090' => 'aar', 'Aa31LG1G26900' => 'aar', 'Aa31LG3G1820' => 'aar', 'Aa31LG5G1100' => 'aar', 'Aa31LG6G4740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2265' => 'aag', 'Actinidia07998' => 'ach', 'Actinidia11266' => 'ach', 'Actinidia12682' => 'ach', 'Actinidia26479' => 'ach', 'Actinidia31406' => 'ach', 'Actinidia32437' => 'ach', 'Actinidia38862' => 'ach', 'Ah.05g174230' => 'amhyb', 'Ah.05g179070' => 'amhyb', 'Ah.05g179090' => 'amhyb', 'Ah.12g059950' => 'amhyb', 'AL3G20480' => 'aly', 'AL4G44520' => 'aly', 'AL5G43110' => 'aly', 'AL6G13890' => 'aly', 'AL6G52620' => 'aly', 'AL7G30830' => 'aly', 'Aqoxy1G00899' => 'aox', 'Aqoxy5G04333' => 'aox', 'Aqoxy7G00641' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3IZ0NN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4EF6AW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W9P8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79GA3M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C43NQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFCU6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G95YVJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCHK29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LU1UG8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX91RN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGB4B1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8DA0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9H7JI' => 'arhy', 'AT3G09320' => 'ath', 'AT3G60800' => 'ath', 'AT4G00840' => 'ath', 'AT4G22750' => 'ath', 'AT5G04270' => 'ath', 'ATR0090G003' => 'atr', 'ATR0559G349' => 'atr', 'ATR0680G261' => 'atr', 'ATR0810G048' => 'atr', 'Atru.chr12.831' => 'acertr', 'Atru.chr5.303' => 'acertr', 'Atru.chr5.748' => 'acertr', 'Atru.chr8.1999' => 'acertr', 'Atru.chr9.1436' => 'acertr', 'AUR62004211' => 'cqu', 'AUR62004548' => 'cqu', 'AUR62013637' => 'cqu', 'AUR62022662' => 'cqu', 'AUR62025777' => 'cqu', 'AUR62042386' => 'cqu', 'BcaB01g02310' => 'bca', 'BcaB01g06062' => 'bca', 'BcaB02g08975' => 'bca', 'BcaB02g08980' => 'bca', 'BcaC01g04228' => 'bca', 'BcaC01g06830' => 'bca', 'BcaC02g10186' => 'bca', 'BcaC02g12214' => 'bca', 'BcaC04g24101' => 'bca', 'BcaC05g29520' => 'bca', 'BcaC05g29661' => 'bca', 'BcaC06g32130' => 'bca', 'BcaC06g32131' => 'bca', 'BcaC07g40601' => 'bca', 'BcaC07g42641' => 'bca', 'BcaNung01038' => 'bca', 'BcaNung01676' => 'bca', 'BcaNung02480' => 'bca', 'BcaNung07376' => 'bca', 'BolC3t16146H' => 'bol', 'BolC3t16637H' => 'bol', 'BolC4t22257H' => 'bol', 'BolC4t24728H' => 'bol', 'BolC5t34517H' => 'bol', 'BolC7t45703H' => 'bol', 'BolC8t51166H' => 'bol', 'BolC9t53038H' => 'bol', 'BolC9t60000H' => 'bol', 'BraA01t01345Z' => 'bra', 'BraA01t01346Z' => 'bra', 'BraA01t01348Z' => 'bra', 'BraA03t12347Z' => 'bra', 'BraA03t12775Z' => 'bra', 'BraA03t14439Z' => 'bra', 'BraA04t15860Z' => 'bra', 'BraA05t19511Z' => 'bra', 'BraA05t22746Z' => 'bra', 'BraA09t35767Z' => 'bra', 'BraA09t40732Z' => 'bra', 'BraA10t45233Z' => 'bra', 'C03p38720' => 'bna', 'C03p43680' => 'bna', 'C04p06350' => 'bna', 'C04p31800' => 'bna', 'C05p58680' => 'bna', 'C07p52110' => 'bna', 'C08p35760' => 'bna', 'C09p01050' => 'bna', 'C09p72600' => 'bna', 'CAN.G106.2' => 'can', 'CAN.G1482.1' => 'can', 'CAN.G324.12' => 'can', 'CAN.G388.20' => 'can', 'CAN.G412.7' => 'can', 'CAN.G694.32' => 'can', 'CAN.G92.12' => 'can', 'CANSAT11G2353' => 'cansat', 'CANSAT21G1398' => 'cansat', 'CANSAT56G2456' => 'cansat', 'CANSAT56G3031' => 'cansat', 'CANSAT56G4539' => 'cansat', 'CARHR083680' => 'chi', 'CARHR171190' => 'chi', 'CARHR209010' => 'chi', 'CARHR229680' => 'chi', 'CARHR249490' => 'chi', 'Carub.0003s0844' => 'cru', 'Carub.0005s2755' => 'cru', 'Carub.0006s0322' => 'cru', 'Carub.0006s3586' => 'cru', 'Carub.0007s1855' => 'cru', 'Ca_07808_v3' => 'car', 'Ca_09535_v3' => 'car', 'Ca_10548_v3' => 'car', 'Ca_19913_v3' => 'car', 'Ca_19916_v3' => 'car', 'Ca_19975_v3' => 'car', 'CBR_g22876' => 'cbr', 'CBR_g22879' => 'cbr', 'CBR_g38491' => 'cbr', 'CBR_g54185' => 'cbr', 'CBR_g54190' => 'cbr', 'Cc02_g11020' => 'ccan', 'Cc02_g23920' => 'ccan', 'Cc02_g39860' => 'ccan', 'Cc02_g39870' => 'ccan', 'Cc03_g06760' => 'ccan', 'Cc06_g02450' => 'ccan', 'Cc09_g09450' => 'ccan', 'CDE02G1959' => 'cde', 'CDE04G0600' => 'cde', 'CDE07G1996' => 'cde', 'CDE07G2078' => 'cde', 'CDE11G0611' => 'cde', 'Cfa001683' => 'cfa', 'Cfa001734' => 'cfa', 'Cfa001737' => 'cfa', 'Cfa003751' => 'cfa', 'Cfa012019' => 'cfa', 'Cfa017353' => 'cfa', 'Cfa017732' => 'cfa', 'Cfa022464' => 'cfa', 'Ciclev10012400m.g' => 'ccl', 'Ciclev10021242m.g' => 'ccl', 'Ciclev10021302m.g' => 'ccl', 'Ciclev10021463m.g' => 'ccl', 'Ciclev10032359m.g' => 'ccl', 'CiPaw.01G081000' => 'cil', 'CiPaw.01G262500' => 'cil', 'CiPaw.01G269800' => 'cil', 'CiPaw.02G168400' => 'cil', 'CiPaw.05G119500' => 'cil', 'CiPaw.11G147300' => 'cil', 'ClCG01G003630' => 'cla', 'ClCG05G000510' => 'cla', 'ClCG05G002300' => 'cla', 'ClCG08G007650' => 'cla', 'ClCG10G021250' => 'cla', 'COL.COLO4_06218' => 'col', 'COL.COLO4_12538' => 'col', 'COL.COLO4_14775' => 'col', 'COL.COLO4_23875' => 'col', 'Cpa.g.sc141.16' => 'cpa', 'Cpa.g.sc169.16' => 'cpa', 'Cpa.g.sc244.4' => 'cpa', 'Cpa.g.sc244.5' => 'cpa', 'Cpa.g.sc29.87' => 'cpa', 'Cpa.g.sc53.115' => 'cpa', 'Cre03.g207502' => 'cre', 'Cre06.g277000' => 'cre', 'Cre09.g394050' => 'cre', 'CsaV3_3G007680' => 'csa', 'CsaV3_3G009710' => 'csa', 'CsaV3_3G034790' => 'csa', 'CsaV3_5G003750' => 'csa', 'CsaV3_6G036620' => 'csa', 'CSS0002288' => 'camsi', 'CSS0011250' => 'camsi', 'CSS0021619' => 'camsi', 'CSS0046701' => 'camsi', 'DCAR_006420' => 'dca', 'DCAR_006865' => 'dca', 'DCAR_008558' => 'dca', 'DCAR_028754' => 'dca', 'DCAR_028755' => 'dca', 'Dinv31218' => 'din', 'Dinv32371' => 'din', 'Dinv34250' => 'din', 'Dinv37156' => 'din', 'Dinv43704' => 'din', 'Duzib093G1811' => 'dzi', 'Duzib106G1622' => 'dzi', 'Duzib114G0504' => 'dzi', 'Duzib128G0338' => 'dzi', 'Duzib128G1577' => 'dzi', 'Duzib133G0104' => 'dzi', 'Duzib133G1080' => 'dzi', 'Duzib138G0324' => 'dzi', 'Duzib138G0394' => 'dzi', 'Duzib205G0122' => 'dzi', 'Duzib268G1020' => 'dzi', 'Duzib268G1359' => 'dzi', 'ECA232G3929' => 'eca', 'ECA236G2210' => 'eca', 'ECA236G2287' => 'eca', 'ECA240G4568' => 'eca', 'ECA247G0894' => 'eca', 'EL10Ac1g00200' => 'bvu', 'EL10Ac1g00886' => 'bvu', 'EL10As1g23091' => 'bvu', 'EL10As1g23092' => 'bvu', 'Eucgr.A01284' => 'egr', 'Eucgr.A01285' => 'egr', 'Eucgr.D02456' => 'egr', 'Eucgr.E00018' => 'egr', 'Eucgr.E01439' => 'egr', 'Eucgr.G02859' => 'egr', 'FAN01G0168' => 'fan', 'FAN01G0453' => 'fan', 'FAN01G2761' => 'fan', 'FAN02G1239' => 'fan', 'FAN03G0645' => 'fan', 'FAN03G2707' => 'fan', 'FAN03G2978' => 'fan', 'FAN04G0227' => 'fan', 'FAN06G0091' => 'fan', 'FAN06G1418' => 'fan', 'FAN06G1512' => 'fan', 'FAN06G1986' => 'fan', 'FAN06G2905' => 'fan', 'FAN06G4325' => 'fan', 'FAN08G0033' => 'fan', 'FAN09G0642' => 'fan', 'FAN10G1763' => 'fan', 'FAN10G2026' => 'fan', 'FAN10G2513' => 'fan', 'FAN10G3402' => 'fan', 'FAN10G3564' => 'fan', 'FAN10G3987' => 'fan', 'FAN13G1490' => 'fan', 'FAN14G5857' => 'fan', 'FAN18G1188' => 'fan', 'FvH4_5g00750' => 'fve', 'FvH4_6g13410' => 'fve', 'FvH4_7g11740' => 'fve', 'FvH4_7g17410' => 'fve', 'FvH4_7g18860' => 'fve', 'Glyma.01G099100' => 'gma', 'Glyma.01G142300' => 'gma', 'Glyma.03G025500' => 'gma', 'Glyma.03G069700' => 'gma', 'Glyma.03G260000' => 'gma', 'Glyma.09G269800' => 'gma', 'Glyma.10G208700' => 'gma', 'Glyma.18G220400' => 'gma', 'Glyma.20G182000' => 'gma', 'Gohir.A01G221726' => 'ghi', 'Gohir.A07G134600' => 'ghi', 'Gohir.A07G146000' => 'ghi', 'Gohir.A08G173900' => 'ghi', 'Gohir.A09G194900' => 'ghi', 'Gohir.A10G204100' => 'ghi', 'Gohir.A11G080600' => 'ghi', 'Gohir.A11G327500' => 'ghi', 'Gohir.A12G101800' => 'ghi', 'Gohir.D01G211200' => 'ghi', 'Gohir.D07G139200' => 'ghi', 'Gohir.D07G152100' => 'ghi', 'Gohir.D08G192600' => 'ghi', 'Gohir.D09G189200' => 'ghi', 'Gohir.D10G212000' => 'ghi', 'Gohir.D11G085200' => 'ghi', 'Gohir.D11G346400' => 'ghi', 'Gohir.D12G104800' => 'ghi', 'Gorai.001G151300' => 'gra', 'Gorai.001G174100' => 'gra', 'Gorai.002G257000' => 'gra', 'Gorai.004G202600' => 'gra', 'Gorai.007G090900' => 'gra', 'Gorai.007G376700' => 'gra', 'Gorai.008G114100' => 'gra', 'Gorai.011G237900' => 'gra', 'GSVIVG01005450001' => 'vvi', 'GSVIVG01016232001' => 'vvi', 'GSVIVG01026157001' => 'vvi', 'GSVIVG01027419001' => 'vvi', 'GSVIVG01027631001' => 'vvi', 'GSVIVG01034143001' => 'vvi', 'HanXRQChr03g0093921' => 'han', 'HanXRQChr04g0120001' => 'han', 'HanXRQChr04g0122561' => 'han', 'HanXRQChr09g0246851' => 'han', 'HanXRQChr10g0293311' => 'han', 'HanXRQChr13g0425231' => 'han', 'HanXRQChr16g0532571' => 'han', 'Haze_09050' => 'cav', 'Haze_15715' => 'cav', 'Haze_15716' => 'cav', 'Haze_16803' => 'cav', 'Haze_16850' => 'cav', 'Hma1.2p1_0301F.1_g118655' => 'hma', 'Hma1.2p1_0309F.1_g120590' => 'hma', 'Hma1.2p1_0936F.1_g238900' => 'hma', 'Hma1.2p1_3552F.1_g336740' => 'hma', 'HPP92_003520' => 'vpl', 'HPP92_006628' => 'vpl', 'HPP92_006645' => 'vpl', 'HPP92_014669' => 'vpl', 'HPP92_015077' => 'vpl', 'Hund16742' => 'sun', 'Hund17022' => 'sun', 'Lalb_Chr02g0152131' => 'lal', 'Lalb_Chr05g0225371' => 'lal', 'Lalb_Chr07g0189841' => 'lal', 'Lalb_Chr07g0192961' => 'lal', 'Lalb_Chr12g0208221' => 'lal', 'Lalb_Chr13g0291211' => 'lal', 'Lalb_Chr13g0291781' => 'lal', 'Lalb_Chr18g0044651' => 'lal', 'Lalb_Chr21g0313731' => 'lal', 'Lj1g0022533' => 'lja', 'Lj2A18T50' => 'lonja', 'Lj2A92G93' => 'lonja', 'Lj3A965T73' => 'lonja', 'Lj3g0000673' => 'lja', 'Lj3g0002666' => 'lja', 'Lj4g0016985' => 'lja', 'Lj5g0003625' => 'lja', 'Lj7A529G36' => 'lonja', 'Lj9A569T49' => 'lonja', 'Lj9A604T63' => 'lonja', 'Lsat_1_v5_gn_3_132060' => 'lsa', 'Lsat_1_v5_gn_4_68941' => 'lsa', 'Lsat_1_v5_gn_5_95580' => 'lsa', 'Lsat_1_v5_gn_7_161' => 'lsa', 'Lsat_1_v5_gn_7_7041' => 'lsa', 'Lsat_1_v5_gn_9_33481' => 'lsa', 'Lsat_1_v5_gn_9_68260' => 'lsa', 'Manes.01G073100' => 'mes', 'Manes.01G266300' => 'mes', 'Manes.02G033300' => 'mes', 'Manes.05G017900' => 'mes', 'Manes.05G046100' => 'mes', 'Manes.08G080900' => 'mes', 'Manes.10G049400' => 'mes', 'Mapoly0009s0186' => 'mpo', 'Mapoly0036s0118' => 'mpo', 'Mapoly0101s0046' => 'mpo', 'MBI04_g30218_MAGBIO' => 'mbi', 'MBI04_g35564_MAGBIO' => 'mbi', 'MBI12_g34011_MAGBIO' => 'mbi', 'MBI14_g04655_MAGBIO' => 'mbi', 'MCO07G653' => 'mco', 'MCO10G173' => 'mco', 'MD01G1087100' => 'mdo', 'MD01G1104200' => 'mdo', 'MD02G1205100' => 'mdo', 'MD04G1079200' => 'mdo', 'MD04G1131400' => 'mdo', 'MD07G1121600' => 'mdo', 'MD07G1157300' => 'mdo', 'MD07G1171000' => 'mdo', 'MD12G1144500' => 'mdo', 'Medtr1g094610' => 'mtr', 'Medtr4g021795' => 'mtr', 'Medtr4g023760' => 'mtr', 'Medtr7g118050' => 'mtr', 'MELO3C005582.2' => 'cme', 'MELO3C005989.2' => 'cme', 'MELO3C006192.2' => 'cme', 'MELO3C009248.2' => 'cme', 'MELO3C019817.2' => 'cme', 'Migut.B01625' => 'egut', 'Migut.B01915' => 'egut', 'Migut.F01721' => 'egut', 'Migut.J00314' => 'egut', 'MSTRG.20742' => 'ama', 'MSTRG.8134' => 'ama', 'Nitab4.5_0000096g0010' => 'nta', 'Nitab4.5_0000202g0030' => 'nta', 'Nitab4.5_0000216g0370' => 'nta', 'Nitab4.5_0000457g0230' => 'nta', 'Nitab4.5_0001702g0170' => 'nta', 'Nitab4.5_0003607g0010' => 'nta', 'Nitab4.5_0004917g0020' => 'nta', 'Nitab4.5_0007059g0010' => 'nta', 'Nitab4.5_0007184g0010' => 'nta', 'Nitab4.5_0007346g0020' => 'nta', 'Nn1g00410' => 'nnu', 'Nn1g01252' => 'nnu', 'Nn2g11168' => 'nnu', 'Nn2g13403' => 'nnu', 'Nn2g13760' => 'nnu', 'Nn4g26380' => 'nnu', 'Oeu000806.2' => 'oeu', 'Oeu005788.1' => 'oeu', 'Oeu006900.3' => 'oeu', 'Oeu007797.1' => 'oeu', 'Oeu011932.1' => 'oeu', 'Oeu022739.1' => 'oeu', 'Oeu037918.1' => 'oeu', 'Oeu055490.2' => 'oeu', 'Os01g0844400' => 'osa', 'Os02g0819100' => 'osa', 'Os03g0804300' => 'osa', 'Os05g0458000' => 'osa', 'Os07g0467800' => 'osa', 'Os12g0602200' => 'osa', 'Peaxi162Scf00013g03444' => 'pax', 'Peaxi162Scf00094g01120' => 'pax', 'Peaxi162Scf00191g01211' => 'pax', 'Peaxi162Scf00238g01110' => 'pax', 'Peaxi162Scf00330g00719' => 'pax', 'Peaxi162Scf00627g00018' => 'pax', 'PGR031G2686' => 'pgr', 'PGR042G0809' => 'pgr', 'PGR142G0193' => 'pgr', 'PGSC0003DMG400011066' => 'stu', 'PGSC0003DMG400012041' => 'stu', 'PGSC0003DMG400013678' => 'stu', 'PGSC0003DMG400023477' => 'stu', 'PGSC0003DMG400025956' => 'stu', 'PGSC0003DMG401019151' => 'stu', 'Phvul.006G116400' => 'pvu', 'Phvul.007G097300' => 'pvu', 'Phvul.010G015000' => 'pvu', 'Phvul.010G083900' => 'pvu', 'Potri.001G117100' => 'ptr', 'Potri.002G147300' => 'ptr', 'Potri.003G115600' => 'ptr', 'Potri.006G087400' => 'ptr', 'Potri.010G226100' => 'ptr', 'Potri.014G069200' => 'ptr', 'Potri.014G104000' => 'ptr', 'Potri.016G100200' => 'ptr', 'Pp3c10_20450' => 'ppa', 'Pp3c1_42400' => 'ppa', 'Pp3c3_24390' => 'ppa', 'Pp3c3_2860' => 'ppa', 'PRCOL_00003193' => 'pco', 'Prupe.2G144500' => 'ppe', 'Prupe.2G195700' => 'ppe', 'Prupe.2G209800' => 'ppe', 'Prupe.5G080000' => 'ppe', 'Prupe.6G257900' => 'ppe', 'Psat3g001160' => 'psa', 'Psat6g181880' => 'psa', 'Psat7g233720' => 'psa', 'PSO063G7587' => 'pso', 'PSO339G2145' => 'pso', 'PSO339G3369' => 'pso', 'PSO478G2747' => 'pso', 'PSO513G0140' => 'pso', 'PSO782G1614' => 'pso', 'PSO782G4889' => 'pso', 'PSO782G5485' => 'pso', 'PSO801G0241' => 'pso', 'QL07p048854' => 'qlo', 'QL08p046745' => 'qlo', 'QL08p052606' => 'qlo', 'QL08p053414' => 'qlo', 'QL08p054868' => 'qlo', 'RcHm_v2.0_Chr1g0350251' => 'rch', 'RcHm_v2.0_Chr1g0360851' => 'rch', 'RcHm_v2.0_Chr1g0362791' => 'rch', 'RcHm_v2.0_Chr3g0466281' => 'rch', 'RcHm_v2.0_Chr7g0201481' => 'rch', 'Rhsim01G0148600' => 'rsi', 'Rhsim05G0194400' => 'rsi', 'Rhsim07G0000700' => 'rsi', 'Rhsim07G0000800' => 'rsi', 'Rhsim07G0027900' => 'rsi', 'Rhsim09G0149500' => 'rsi', 'RhsimUnG0186900' => 'rsi', 'Sabra01G0089900' => 'sbr', 'Sabra02G0114700' => 'sbr', 'Sabra02G0116300' => 'sbr', 'Sabra03G0080100' => 'sbr', 'Sabra08G0024300' => 'sbr', 'Sabra10G0174300' => 'sbr', 'Sabra14G0048900' => 'sbr', 'Sabra14G0076500' => 'sbr', 'SalBow5G2513' => 'sbo', 'Sc01g0002300' => 'sci', 'Sc01g0004450' => 'sci', 'Sc06g0001680' => 'sci', 'Sc23g0003580' => 'sci', 'Sed0000913' => 'sed', 'Sed0001655' => 'sed', 'Sed0007745' => 'sed', 'Sed0010951' => 'sed', 'Sed0017599' => 'sed', 'Sed0021405' => 'sed', 'Sed0022810' => 'sed', 'SEGI_07099' => 'sgi', 'SEGI_11931' => 'sgi', 'SEGI_13187' => 'sgi', 'SEGI_29958' => 'sgi', 'SEGI_36351' => 'sgi', 'SGA_v2.0_scaffold126G33770' => 'sas', 'SGA_v2.0_scaffold153G37003' => 'sas', 'SGA_v2.0_scaffold2G01359' => 'sas', 'SGA_v2.0_scaffold5G03064' => 'sas', 'SGA_v2.0_scaffold95G28903' => 'sas', 'SHI12701' => 'shi', 'SHI26410' => 'shi', 'SHI38997' => 'shi', 'SHI53759' => 'shi', 'SHI53886' => 'shi', 'SHI54714' => 'shi', 'SMO011G0041' => 'smo', 'SMO146G0251' => 'smo', 'SMO160G0004' => 'smo', 'SMO174G0057' => 'smo', 'SMO244G0089' => 'smo', 'SMO296G0011' => 'smo', 'Solyc01g091280.3' => 'sly', 'Solyc05g047610.3' => 'sly', 'Solyc05g047640.3' => 'sly', 'Solyc05g055630.3' => 'sly', 'Solyc10g018160.2' => 'sly', 'Solyc10g084820.2' => 'sly', 'Solyc10g086565.2' => 'sly', 'Sopen01g037030' => 'spe', 'Sopen05g027920' => 'spe', 'Sopen05g034070' => 'spe', 'Sopen10g007260' => 'spe', 'Sopen10g034260' => 'spe', 'Sopen10g035950' => 'spe', 'Sp3g07710' => 'spa', 'Sp4g27420' => 'spa', 'Sp5g02450' => 'spa', 'Sp6g01280' => 'spa', 'Sp6g38480' => 'spa', 'Sp7g20780' => 'spa', 'TAR374G1413' => 'tar', 'TAR623G1777' => 'tar', 'TAR629G2370' => 'tar', 'TAR633G1759' => 'tar', 'TAR636G3387' => 'tar', 'THA.LOC104802447' => 'tha', 'THA.LOC104813916' => 'tha', 'THA.LOC104816423' => 'tha', 'THA.LOC104817246' => 'tha', 'THA.LOC104825895' => 'tha', 'Thecc.01G335200' => 'tca', 'Thecc.01G377400' => 'tca', 'Thecc.03G262200' => 'tca', 'Thecc.05G036800' => 'tca', 'Thecc.10G080500' => 'tca', 'Thecc.10G080800' => 'tca', 'Thhalv10001560m.g' => 'esa', 'Thhalv10006120m.g' => 'esa', 'Thhalv10014375m.g' => 'esa', 'Thhalv10021264m.g' => 'esa', 'Thhalv10028856m.g' => 'esa', 'TPR.G1914' => 'tpr', 'TPR.G4757' => 'tpr', 'TPR.G5595' => 'tpr', 'TWI14G0952' => 'twi', 'TWI14G1307' => 'twi', 'TWI38G2143' => 'twi', 'TWI59G0826' => 'twi', 'TWI77G0527' => 'twi', 'TWI81G0150' => 'twi', 'unitig_21.g21018' => 'ugi', 'unitig_26.g9725' => 'ugi', 'unitig_744.g24653' => 'ugi', 'unitig_749.g13778' => 'ugi', 'unitig_899.g15035' => 'ugi', 'vmacro04296' => 'vma', 'vmacro04852' => 'vma', 'vmacro13404' => 'vma', 'vmacro20169' => 'vma', 'vmacro21014' => 'vma', 'VMungo0331G0237' => 'vmu', 'VMungo0331G0706' => 'vmu', 'VMungo0331G1361' => 'vmu', 'VMungo0331G1489' => 'vmu', 'VMungo0540G1037' => 'vmu', 'VMungo0720G2487' => 'vmu', 'VMungo0720G2721' => 'vmu', 'Zm00001eb086860' => 'zma', 'Zm00001eb104760' => 'zma', 'Zm00001eb148220' => 'zma', 'Zm00001eb259030' => 'zma', 'Zm00001eb289590' => 'zma', 'Zm00001eb420150' => 'zma' ) $gf_id = 'HOM05D000968' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000968' ) $data_identifier = 'HOM05D000968' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 19, 'bol' => (int) 9, 'bra' => (int) 12, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 5, 'ccan' => (int) 7, 'cde' => (int) 5, 'cfa' => (int) 8, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 4, 'dca' => (int) 5, 'din' => (int) 5, 'dzi' => (int) 12, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 25, 'fve' => (int) 5, 'gma' => (int) 9, 'ghi' => (int) 18, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 7, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 5, 'sun' => (int) 2, 'lal' => (int) 9, 'lja' => (int) 5, 'lonja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 9, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 2, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 3, 'stu' => (int) 6, 'pvu' => (int) 4, 'ptr' => (int) 8, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 3, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 1, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 5, 'sas' => (int) 5, 'shi' => (int) 6, 'smo' => (int) 6, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 3, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420150' $species_info = array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ) $local_species = 'esa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000968', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p31690' => 'bna', 'A03p36040' => 'bna', 'A03p53730' => 'bna', 'A04p01410' => 'bna', 'A05p05420' => 'bna', 'A05p39630' => 'bna', 'A05p39640' => 'bna', 'A09p00970' => 'bna', 'A09p53060' => 'bna', 'A10p31890' => 'bna', 'Aa31LG10G15040' => 'aar', 'Aa31LG1G21090' => 'aar', 'Aa31LG1G26900' => 'aar', 'Aa31LG3G1820' => 'aar', 'Aa31LG5G1100' => 'aar', 'Aa31LG6G4740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2265' => 'aag', 'Actinidia07998' => 'ach', 'Actinidia11266' => 'ach', 'Actinidia12682' => 'ach', 'Actinidia26479' => 'ach', 'Actinidia31406' => 'ach', 'Actinidia32437' => 'ach', 'Actinidia38862' => 'ach', 'Ah.05g174230' => 'amhyb', 'Ah.05g179070' => 'amhyb', 'Ah.05g179090' => 'amhyb', 'Ah.12g059950' => 'amhyb', 'AL3G20480' => 'aly', 'AL4G44520' => 'aly', 'AL5G43110' => 'aly', 'AL6G13890' => 'aly', 'AL6G52620' => 'aly', 'AL7G30830' => 'aly', 'Aqoxy1G00899' => 'aox', 'Aqoxy5G04333' => 'aox', 'Aqoxy7G00641' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3IZ0NN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4EF6AW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W9P8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79GA3M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C43NQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFCU6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G95YVJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCHK29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LU1UG8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX91RN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGB4B1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8DA0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9H7JI' => 'arhy', 'AT3G09320' => 'ath', 'AT3G60800' => 'ath', 'AT4G00840' => 'ath', 'AT4G22750' => 'ath', 'AT5G04270' => 'ath', 'ATR0090G003' => 'atr', 'ATR0559G349' => 'atr', 'ATR0680G261' => 'atr', 'ATR0810G048' => 'atr', 'Atru.chr12.831' => 'acertr', 'Atru.chr5.303' => 'acertr', 'Atru.chr5.748' => 'acertr', 'Atru.chr8.1999' => 'acertr', 'Atru.chr9.1436' => 'acertr', 'AUR62004211' => 'cqu', 'AUR62004548' => 'cqu', 'AUR62013637' => 'cqu', 'AUR62022662' => 'cqu', 'AUR62025777' => 'cqu', 'AUR62042386' => 'cqu', 'BcaB01g02310' => 'bca', 'BcaB01g06062' => 'bca', 'BcaB02g08975' => 'bca', 'BcaB02g08980' => 'bca', 'BcaC01g04228' => 'bca', 'BcaC01g06830' => 'bca', 'BcaC02g10186' => 'bca', 'BcaC02g12214' => 'bca', 'BcaC04g24101' => 'bca', 'BcaC05g29520' => 'bca', 'BcaC05g29661' => 'bca', 'BcaC06g32130' => 'bca', 'BcaC06g32131' => 'bca', 'BcaC07g40601' => 'bca', 'BcaC07g42641' => 'bca', 'BcaNung01038' => 'bca', 'BcaNung01676' => 'bca', 'BcaNung02480' => 'bca', 'BcaNung07376' => 'bca', 'BolC3t16146H' => 'bol', 'BolC3t16637H' => 'bol', 'BolC4t22257H' => 'bol', 'BolC4t24728H' => 'bol', 'BolC5t34517H' => 'bol', 'BolC7t45703H' => 'bol', 'BolC8t51166H' => 'bol', 'BolC9t53038H' => 'bol', 'BolC9t60000H' => 'bol', 'BraA01t01345Z' => 'bra', 'BraA01t01346Z' => 'bra', 'BraA01t01348Z' => 'bra', 'BraA03t12347Z' => 'bra', 'BraA03t12775Z' => 'bra', 'BraA03t14439Z' => 'bra', 'BraA04t15860Z' => 'bra', 'BraA05t19511Z' => 'bra', 'BraA05t22746Z' => 'bra', 'BraA09t35767Z' => 'bra', 'BraA09t40732Z' => 'bra', 'BraA10t45233Z' => 'bra', 'C03p38720' => 'bna', 'C03p43680' => 'bna', 'C04p06350' => 'bna', 'C04p31800' => 'bna', 'C05p58680' => 'bna', 'C07p52110' => 'bna', 'C08p35760' => 'bna', 'C09p01050' => 'bna', 'C09p72600' => 'bna', 'CAN.G106.2' => 'can', 'CAN.G1482.1' => 'can', 'CAN.G324.12' => 'can', 'CAN.G388.20' => 'can', 'CAN.G412.7' => 'can', 'CAN.G694.32' => 'can', 'CAN.G92.12' => 'can', 'CANSAT11G2353' => 'cansat', 'CANSAT21G1398' => 'cansat', 'CANSAT56G2456' => 'cansat', 'CANSAT56G3031' => 'cansat', 'CANSAT56G4539' => 'cansat', 'CARHR083680' => 'chi', 'CARHR171190' => 'chi', 'CARHR209010' => 'chi', 'CARHR229680' => 'chi', 'CARHR249490' => 'chi', 'Carub.0003s0844' => 'cru', 'Carub.0005s2755' => 'cru', 'Carub.0006s0322' => 'cru', 'Carub.0006s3586' => 'cru', 'Carub.0007s1855' => 'cru', 'Ca_07808_v3' => 'car', 'Ca_09535_v3' => 'car', 'Ca_10548_v3' => 'car', 'Ca_19913_v3' => 'car', 'Ca_19916_v3' => 'car', 'Ca_19975_v3' => 'car', 'CBR_g22876' => 'cbr', 'CBR_g22879' => 'cbr', 'CBR_g38491' => 'cbr', 'CBR_g54185' => 'cbr', 'CBR_g54190' => 'cbr', 'Cc02_g11020' => 'ccan', 'Cc02_g23920' => 'ccan', 'Cc02_g39860' => 'ccan', 'Cc02_g39870' => 'ccan', 'Cc03_g06760' => 'ccan', 'Cc06_g02450' => 'ccan', 'Cc09_g09450' => 'ccan', 'CDE02G1959' => 'cde', 'CDE04G0600' => 'cde', 'CDE07G1996' => 'cde', 'CDE07G2078' => 'cde', 'CDE11G0611' => 'cde', 'Cfa001683' => 'cfa', 'Cfa001734' => 'cfa', 'Cfa001737' => 'cfa', 'Cfa003751' => 'cfa', 'Cfa012019' => 'cfa', 'Cfa017353' => 'cfa', 'Cfa017732' => 'cfa', 'Cfa022464' => 'cfa', 'Ciclev10012400m.g' => 'ccl', 'Ciclev10021242m.g' => 'ccl', 'Ciclev10021302m.g' => 'ccl', 'Ciclev10021463m.g' => 'ccl', 'Ciclev10032359m.g' => 'ccl', 'CiPaw.01G081000' => 'cil', 'CiPaw.01G262500' => 'cil', 'CiPaw.01G269800' => 'cil', 'CiPaw.02G168400' => 'cil', 'CiPaw.05G119500' => 'cil', 'CiPaw.11G147300' => 'cil', 'ClCG01G003630' => 'cla', 'ClCG05G000510' => 'cla', 'ClCG05G002300' => 'cla', 'ClCG08G007650' => 'cla', 'ClCG10G021250' => 'cla', 'COL.COLO4_06218' => 'col', 'COL.COLO4_12538' => 'col', 'COL.COLO4_14775' => 'col', 'COL.COLO4_23875' => 'col', 'Cpa.g.sc141.16' => 'cpa', 'Cpa.g.sc169.16' => 'cpa', 'Cpa.g.sc244.4' => 'cpa', 'Cpa.g.sc244.5' => 'cpa', 'Cpa.g.sc29.87' => 'cpa', 'Cpa.g.sc53.115' => 'cpa', 'Cre03.g207502' => 'cre', 'Cre06.g277000' => 'cre', 'Cre09.g394050' => 'cre', 'CsaV3_3G007680' => 'csa', 'CsaV3_3G009710' => 'csa', 'CsaV3_3G034790' => 'csa', 'CsaV3_5G003750' => 'csa', 'CsaV3_6G036620' => 'csa', 'CSS0002288' => 'camsi', 'CSS0011250' => 'camsi', 'CSS0021619' => 'camsi', 'CSS0046701' => 'camsi', 'DCAR_006420' => 'dca', 'DCAR_006865' => 'dca', 'DCAR_008558' => 'dca', 'DCAR_028754' => 'dca', 'DCAR_028755' => 'dca', 'Dinv31218' => 'din', 'Dinv32371' => 'din', 'Dinv34250' => 'din', 'Dinv37156' => 'din', 'Dinv43704' => 'din', 'Duzib093G1811' => 'dzi', 'Duzib106G1622' => 'dzi', 'Duzib114G0504' => 'dzi', 'Duzib128G0338' => 'dzi', 'Duzib128G1577' => 'dzi', 'Duzib133G0104' => 'dzi', 'Duzib133G1080' => 'dzi', 'Duzib138G0324' => 'dzi', 'Duzib138G0394' => 'dzi', 'Duzib205G0122' => 'dzi', 'Duzib268G1020' => 'dzi', 'Duzib268G1359' => 'dzi', 'ECA232G3929' => 'eca', 'ECA236G2210' => 'eca', 'ECA236G2287' => 'eca', 'ECA240G4568' => 'eca', 'ECA247G0894' => 'eca', 'EL10Ac1g00200' => 'bvu', 'EL10Ac1g00886' => 'bvu', 'EL10As1g23091' => 'bvu', 'EL10As1g23092' => 'bvu', 'Eucgr.A01284' => 'egr', 'Eucgr.A01285' => 'egr', 'Eucgr.D02456' => 'egr', 'Eucgr.E00018' => 'egr', 'Eucgr.E01439' => 'egr', 'Eucgr.G02859' => 'egr', 'FAN01G0168' => 'fan', 'FAN01G0453' => 'fan', 'FAN01G2761' => 'fan', 'FAN02G1239' => 'fan', 'FAN03G0645' => 'fan', 'FAN03G2707' => 'fan', 'FAN03G2978' => 'fan', 'FAN04G0227' => 'fan', 'FAN06G0091' => 'fan', 'FAN06G1418' => 'fan', 'FAN06G1512' => 'fan', 'FAN06G1986' => 'fan', 'FAN06G2905' => 'fan', 'FAN06G4325' => 'fan', 'FAN08G0033' => 'fan', 'FAN09G0642' => 'fan', 'FAN10G1763' => 'fan', 'FAN10G2026' => 'fan', 'FAN10G2513' => 'fan', 'FAN10G3402' => 'fan', 'FAN10G3564' => 'fan', 'FAN10G3987' => 'fan', 'FAN13G1490' => 'fan', 'FAN14G5857' => 'fan', 'FAN18G1188' => 'fan', 'FvH4_5g00750' => 'fve', 'FvH4_6g13410' => 'fve', 'FvH4_7g11740' => 'fve', 'FvH4_7g17410' => 'fve', 'FvH4_7g18860' => 'fve', 'Glyma.01G099100' => 'gma', 'Glyma.01G142300' => 'gma', 'Glyma.03G025500' => 'gma', 'Glyma.03G069700' => 'gma', 'Glyma.03G260000' => 'gma', 'Glyma.09G269800' => 'gma', 'Glyma.10G208700' => 'gma', 'Glyma.18G220400' => 'gma', 'Glyma.20G182000' => 'gma', 'Gohir.A01G221726' => 'ghi', 'Gohir.A07G134600' => 'ghi', 'Gohir.A07G146000' => 'ghi', 'Gohir.A08G173900' => 'ghi', 'Gohir.A09G194900' => 'ghi', 'Gohir.A10G204100' => 'ghi', 'Gohir.A11G080600' => 'ghi', 'Gohir.A11G327500' => 'ghi', 'Gohir.A12G101800' => 'ghi', 'Gohir.D01G211200' => 'ghi', 'Gohir.D07G139200' => 'ghi', 'Gohir.D07G152100' => 'ghi', 'Gohir.D08G192600' => 'ghi', 'Gohir.D09G189200' => 'ghi', 'Gohir.D10G212000' => 'ghi', 'Gohir.D11G085200' => 'ghi', 'Gohir.D11G346400' => 'ghi', 'Gohir.D12G104800' => 'ghi', 'Gorai.001G151300' => 'gra', 'Gorai.001G174100' => 'gra', 'Gorai.002G257000' => 'gra', 'Gorai.004G202600' => 'gra', 'Gorai.007G090900' => 'gra', 'Gorai.007G376700' => 'gra', 'Gorai.008G114100' => 'gra', 'Gorai.011G237900' => 'gra', 'GSVIVG01005450001' => 'vvi', 'GSVIVG01016232001' => 'vvi', 'GSVIVG01026157001' => 'vvi', 'GSVIVG01027419001' => 'vvi', 'GSVIVG01027631001' => 'vvi', 'GSVIVG01034143001' => 'vvi', 'HanXRQChr03g0093921' => 'han', 'HanXRQChr04g0120001' => 'han', 'HanXRQChr04g0122561' => 'han', 'HanXRQChr09g0246851' => 'han', 'HanXRQChr10g0293311' => 'han', 'HanXRQChr13g0425231' => 'han', 'HanXRQChr16g0532571' => 'han', 'Haze_09050' => 'cav', 'Haze_15715' => 'cav', 'Haze_15716' => 'cav', 'Haze_16803' => 'cav', 'Haze_16850' => 'cav', 'Hma1.2p1_0301F.1_g118655' => 'hma', 'Hma1.2p1_0309F.1_g120590' => 'hma', 'Hma1.2p1_0936F.1_g238900' => 'hma', 'Hma1.2p1_3552F.1_g336740' => 'hma', 'HPP92_003520' => 'vpl', 'HPP92_006628' => 'vpl', 'HPP92_006645' => 'vpl', 'HPP92_014669' => 'vpl', 'HPP92_015077' => 'vpl', 'Hund16742' => 'sun', 'Hund17022' => 'sun', 'Lalb_Chr02g0152131' => 'lal', 'Lalb_Chr05g0225371' => 'lal', 'Lalb_Chr07g0189841' => 'lal', 'Lalb_Chr07g0192961' => 'lal', 'Lalb_Chr12g0208221' => 'lal', 'Lalb_Chr13g0291211' => 'lal', 'Lalb_Chr13g0291781' => 'lal', 'Lalb_Chr18g0044651' => 'lal', 'Lalb_Chr21g0313731' => 'lal', 'Lj1g0022533' => 'lja', 'Lj2A18T50' => 'lonja', 'Lj2A92G93' => 'lonja', 'Lj3A965T73' => 'lonja', 'Lj3g0000673' => 'lja', 'Lj3g0002666' => 'lja', 'Lj4g0016985' => 'lja', 'Lj5g0003625' => 'lja', 'Lj7A529G36' => 'lonja', 'Lj9A569T49' => 'lonja', 'Lj9A604T63' => 'lonja', 'Lsat_1_v5_gn_3_132060' => 'lsa', 'Lsat_1_v5_gn_4_68941' => 'lsa', 'Lsat_1_v5_gn_5_95580' => 'lsa', 'Lsat_1_v5_gn_7_161' => 'lsa', 'Lsat_1_v5_gn_7_7041' => 'lsa', 'Lsat_1_v5_gn_9_33481' => 'lsa', 'Lsat_1_v5_gn_9_68260' => 'lsa', 'Manes.01G073100' => 'mes', 'Manes.01G266300' => 'mes', 'Manes.02G033300' => 'mes', 'Manes.05G017900' => 'mes', 'Manes.05G046100' => 'mes', 'Manes.08G080900' => 'mes', 'Manes.10G049400' => 'mes', 'Mapoly0009s0186' => 'mpo', 'Mapoly0036s0118' => 'mpo', 'Mapoly0101s0046' => 'mpo', 'MBI04_g30218_MAGBIO' => 'mbi', 'MBI04_g35564_MAGBIO' => 'mbi', 'MBI12_g34011_MAGBIO' => 'mbi', 'MBI14_g04655_MAGBIO' => 'mbi', 'MCO07G653' => 'mco', 'MCO10G173' => 'mco', 'MD01G1087100' => 'mdo', 'MD01G1104200' => 'mdo', 'MD02G1205100' => 'mdo', 'MD04G1079200' => 'mdo', 'MD04G1131400' => 'mdo', 'MD07G1121600' => 'mdo', 'MD07G1157300' => 'mdo', 'MD07G1171000' => 'mdo', 'MD12G1144500' => 'mdo', 'Medtr1g094610' => 'mtr', 'Medtr4g021795' => 'mtr', 'Medtr4g023760' => 'mtr', 'Medtr7g118050' => 'mtr', 'MELO3C005582.2' => 'cme', 'MELO3C005989.2' => 'cme', 'MELO3C006192.2' => 'cme', 'MELO3C009248.2' => 'cme', 'MELO3C019817.2' => 'cme', 'Migut.B01625' => 'egut', 'Migut.B01915' => 'egut', 'Migut.F01721' => 'egut', 'Migut.J00314' => 'egut', 'MSTRG.20742' => 'ama', 'MSTRG.8134' => 'ama', 'Nitab4.5_0000096g0010' => 'nta', 'Nitab4.5_0000202g0030' => 'nta', 'Nitab4.5_0000216g0370' => 'nta', 'Nitab4.5_0000457g0230' => 'nta', 'Nitab4.5_0001702g0170' => 'nta', 'Nitab4.5_0003607g0010' => 'nta', 'Nitab4.5_0004917g0020' => 'nta', 'Nitab4.5_0007059g0010' => 'nta', 'Nitab4.5_0007184g0010' => 'nta', 'Nitab4.5_0007346g0020' => 'nta', 'Nn1g00410' => 'nnu', 'Nn1g01252' => 'nnu', 'Nn2g11168' => 'nnu', 'Nn2g13403' => 'nnu', 'Nn2g13760' => 'nnu', 'Nn4g26380' => 'nnu', 'Oeu000806.2' => 'oeu', 'Oeu005788.1' => 'oeu', 'Oeu006900.3' => 'oeu', 'Oeu007797.1' => 'oeu', 'Oeu011932.1' => 'oeu', 'Oeu022739.1' => 'oeu', 'Oeu037918.1' => 'oeu', 'Oeu055490.2' => 'oeu', 'Os01g0844400' => 'osa', 'Os02g0819100' => 'osa', 'Os03g0804300' => 'osa', 'Os05g0458000' => 'osa', 'Os07g0467800' => 'osa', 'Os12g0602200' => 'osa', 'Peaxi162Scf00013g03444' => 'pax', 'Peaxi162Scf00094g01120' => 'pax', 'Peaxi162Scf00191g01211' => 'pax', 'Peaxi162Scf00238g01110' => 'pax', 'Peaxi162Scf00330g00719' => 'pax', 'Peaxi162Scf00627g00018' => 'pax', 'PGR031G2686' => 'pgr', 'PGR042G0809' => 'pgr', 'PGR142G0193' => 'pgr', 'PGSC0003DMG400011066' => 'stu', 'PGSC0003DMG400012041' => 'stu', 'PGSC0003DMG400013678' => 'stu', 'PGSC0003DMG400023477' => 'stu', 'PGSC0003DMG400025956' => 'stu', 'PGSC0003DMG401019151' => 'stu', 'Phvul.006G116400' => 'pvu', 'Phvul.007G097300' => 'pvu', 'Phvul.010G015000' => 'pvu', 'Phvul.010G083900' => 'pvu', 'Potri.001G117100' => 'ptr', 'Potri.002G147300' => 'ptr', 'Potri.003G115600' => 'ptr', 'Potri.006G087400' => 'ptr', 'Potri.010G226100' => 'ptr', 'Potri.014G069200' => 'ptr', 'Potri.014G104000' => 'ptr', 'Potri.016G100200' => 'ptr', 'Pp3c10_20450' => 'ppa', 'Pp3c1_42400' => 'ppa', 'Pp3c3_24390' => 'ppa', 'Pp3c3_2860' => 'ppa', 'PRCOL_00003193' => 'pco', 'Prupe.2G144500' => 'ppe', 'Prupe.2G195700' => 'ppe', 'Prupe.2G209800' => 'ppe', 'Prupe.5G080000' => 'ppe', 'Prupe.6G257900' => 'ppe', 'Psat3g001160' => 'psa', 'Psat6g181880' => 'psa', 'Psat7g233720' => 'psa', 'PSO063G7587' => 'pso', 'PSO339G2145' => 'pso', 'PSO339G3369' => 'pso', 'PSO478G2747' => 'pso', 'PSO513G0140' => 'pso', 'PSO782G1614' => 'pso', 'PSO782G4889' => 'pso', 'PSO782G5485' => 'pso', 'PSO801G0241' => 'pso', 'QL07p048854' => 'qlo', 'QL08p046745' => 'qlo', 'QL08p052606' => 'qlo', 'QL08p053414' => 'qlo', 'QL08p054868' => 'qlo', 'RcHm_v2.0_Chr1g0350251' => 'rch', 'RcHm_v2.0_Chr1g0360851' => 'rch', 'RcHm_v2.0_Chr1g0362791' => 'rch', 'RcHm_v2.0_Chr3g0466281' => 'rch', 'RcHm_v2.0_Chr7g0201481' => 'rch', 'Rhsim01G0148600' => 'rsi', 'Rhsim05G0194400' => 'rsi', 'Rhsim07G0000700' => 'rsi', 'Rhsim07G0000800' => 'rsi', 'Rhsim07G0027900' => 'rsi', 'Rhsim09G0149500' => 'rsi', 'RhsimUnG0186900' => 'rsi', 'Sabra01G0089900' => 'sbr', 'Sabra02G0114700' => 'sbr', 'Sabra02G0116300' => 'sbr', 'Sabra03G0080100' => 'sbr', 'Sabra08G0024300' => 'sbr', 'Sabra10G0174300' => 'sbr', 'Sabra14G0048900' => 'sbr', 'Sabra14G0076500' => 'sbr', 'SalBow5G2513' => 'sbo', 'Sc01g0002300' => 'sci', 'Sc01g0004450' => 'sci', 'Sc06g0001680' => 'sci', 'Sc23g0003580' => 'sci', 'Sed0000913' => 'sed', 'Sed0001655' => 'sed', 'Sed0007745' => 'sed', 'Sed0010951' => 'sed', 'Sed0017599' => 'sed', 'Sed0021405' => 'sed', 'Sed0022810' => 'sed', 'SEGI_07099' => 'sgi', 'SEGI_11931' => 'sgi', 'SEGI_13187' => 'sgi', 'SEGI_29958' => 'sgi', 'SEGI_36351' => 'sgi', 'SGA_v2.0_scaffold126G33770' => 'sas', 'SGA_v2.0_scaffold153G37003' => 'sas', 'SGA_v2.0_scaffold2G01359' => 'sas', 'SGA_v2.0_scaffold5G03064' => 'sas', 'SGA_v2.0_scaffold95G28903' => 'sas', 'SHI12701' => 'shi', 'SHI26410' => 'shi', 'SHI38997' => 'shi', 'SHI53759' => 'shi', 'SHI53886' => 'shi', 'SHI54714' => 'shi', 'SMO011G0041' => 'smo', 'SMO146G0251' => 'smo', 'SMO160G0004' => 'smo', 'SMO174G0057' => 'smo', 'SMO244G0089' => 'smo', 'SMO296G0011' => 'smo', 'Solyc01g091280.3' => 'sly', 'Solyc05g047610.3' => 'sly', 'Solyc05g047640.3' => 'sly', 'Solyc05g055630.3' => 'sly', 'Solyc10g018160.2' => 'sly', 'Solyc10g084820.2' => 'sly', 'Solyc10g086565.2' => 'sly', 'Sopen01g037030' => 'spe', 'Sopen05g027920' => 'spe', 'Sopen05g034070' => 'spe', 'Sopen10g007260' => 'spe', 'Sopen10g034260' => 'spe', 'Sopen10g035950' => 'spe', 'Sp3g07710' => 'spa', 'Sp4g27420' => 'spa', 'Sp5g02450' => 'spa', 'Sp6g01280' => 'spa', 'Sp6g38480' => 'spa', 'Sp7g20780' => 'spa', 'TAR374G1413' => 'tar', 'TAR623G1777' => 'tar', 'TAR629G2370' => 'tar', 'TAR633G1759' => 'tar', 'TAR636G3387' => 'tar', 'THA.LOC104802447' => 'tha', 'THA.LOC104813916' => 'tha', 'THA.LOC104816423' => 'tha', 'THA.LOC104817246' => 'tha', 'THA.LOC104825895' => 'tha', 'Thecc.01G335200' => 'tca', 'Thecc.01G377400' => 'tca', 'Thecc.03G262200' => 'tca', 'Thecc.05G036800' => 'tca', 'Thecc.10G080500' => 'tca', 'Thecc.10G080800' => 'tca', 'Thhalv10001560m.g' => 'esa', 'Thhalv10006120m.g' => 'esa', 'Thhalv10014375m.g' => 'esa', 'Thhalv10021264m.g' => 'esa', 'Thhalv10028856m.g' => 'esa', 'TPR.G1914' => 'tpr', 'TPR.G4757' => 'tpr', 'TPR.G5595' => 'tpr', 'TWI14G0952' => 'twi', 'TWI14G1307' => 'twi', 'TWI38G2143' => 'twi', 'TWI59G0826' => 'twi', 'TWI77G0527' => 'twi', 'TWI81G0150' => 'twi', 'unitig_21.g21018' => 'ugi', 'unitig_26.g9725' => 'ugi', 'unitig_744.g24653' => 'ugi', 'unitig_749.g13778' => 'ugi', 'unitig_899.g15035' => 'ugi', 'vmacro04296' => 'vma', 'vmacro04852' => 'vma', 'vmacro13404' => 'vma', 'vmacro20169' => 'vma', 'vmacro21014' => 'vma', 'VMungo0331G0237' => 'vmu', 'VMungo0331G0706' => 'vmu', 'VMungo0331G1361' => 'vmu', 'VMungo0331G1489' => 'vmu', 'VMungo0540G1037' => 'vmu', 'VMungo0720G2487' => 'vmu', 'VMungo0720G2721' => 'vmu', 'Zm00001eb086860' => 'zma', 'Zm00001eb104760' => 'zma', 'Zm00001eb148220' => 'zma', 'Zm00001eb259030' => 'zma', 'Zm00001eb289590' => 'zma', 'Zm00001eb420150' => 'zma' ), 'gf_id' => 'HOM05D000968', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000968' ), 'data_identifier' => 'HOM05D000968', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000968', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p31690' => 'bna', 'A03p36040' => 'bna', 'A03p53730' => 'bna', 'A04p01410' => 'bna', 'A05p05420' => 'bna', 'A05p39630' => 'bna', 'A05p39640' => 'bna', 'A09p00970' => 'bna', 'A09p53060' => 'bna', 'A10p31890' => 'bna', 'Aa31LG10G15040' => 'aar', 'Aa31LG1G21090' => 'aar', 'Aa31LG1G26900' => 'aar', 'Aa31LG3G1820' => 'aar', 'Aa31LG5G1100' => 'aar', 'Aa31LG6G4740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2265' => 'aag', 'Actinidia07998' => 'ach', 'Actinidia11266' => 'ach', 'Actinidia12682' => 'ach', 'Actinidia26479' => 'ach', 'Actinidia31406' => 'ach', 'Actinidia32437' => 'ach', 'Actinidia38862' => 'ach', 'Ah.05g174230' => 'amhyb', 'Ah.05g179070' => 'amhyb', 'Ah.05g179090' => 'amhyb', 'Ah.12g059950' => 'amhyb', 'AL3G20480' => 'aly', 'AL4G44520' => 'aly', 'AL5G43110' => 'aly', 'AL6G13890' => 'aly', 'AL6G52620' => 'aly', 'AL7G30830' => 'aly', 'Aqoxy1G00899' => 'aox', 'Aqoxy5G04333' => 'aox', 'Aqoxy7G00641' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3IZ0NN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4EF6AW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W9P8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79GA3M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C43NQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFCU6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G95YVJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCHK29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LU1UG8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX91RN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGB4B1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8DA0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9H7JI' => 'arhy', 'AT3G09320' => 'ath', 'AT3G60800' => 'ath', 'AT4G00840' => 'ath', 'AT4G22750' => 'ath', 'AT5G04270' => 'ath', 'ATR0090G003' => 'atr', 'ATR0559G349' => 'atr', 'ATR0680G261' => 'atr', 'ATR0810G048' => 'atr', 'Atru.chr12.831' => 'acertr', 'Atru.chr5.303' => 'acertr', 'Atru.chr5.748' => 'acertr', 'Atru.chr8.1999' => 'acertr', 'Atru.chr9.1436' => 'acertr', 'AUR62004211' => 'cqu', 'AUR62004548' => 'cqu', 'AUR62013637' => 'cqu', 'AUR62022662' => 'cqu', 'AUR62025777' => 'cqu', 'AUR62042386' => 'cqu', 'BcaB01g02310' => 'bca', 'BcaB01g06062' => 'bca', 'BcaB02g08975' => 'bca', 'BcaB02g08980' => 'bca', 'BcaC01g04228' => 'bca', 'BcaC01g06830' => 'bca', 'BcaC02g10186' => 'bca', 'BcaC02g12214' => 'bca', 'BcaC04g24101' => 'bca', 'BcaC05g29520' => 'bca', 'BcaC05g29661' => 'bca', 'BcaC06g32130' => 'bca', 'BcaC06g32131' => 'bca', 'BcaC07g40601' => 'bca', 'BcaC07g42641' => 'bca', 'BcaNung01038' => 'bca', 'BcaNung01676' => 'bca', 'BcaNung02480' => 'bca', 'BcaNung07376' => 'bca', 'BolC3t16146H' => 'bol', 'BolC3t16637H' => 'bol', 'BolC4t22257H' => 'bol', 'BolC4t24728H' => 'bol', 'BolC5t34517H' => 'bol', 'BolC7t45703H' => 'bol', 'BolC8t51166H' => 'bol', 'BolC9t53038H' => 'bol', 'BolC9t60000H' => 'bol', 'BraA01t01345Z' => 'bra', 'BraA01t01346Z' => 'bra', 'BraA01t01348Z' => 'bra', 'BraA03t12347Z' => 'bra', 'BraA03t12775Z' => 'bra', 'BraA03t14439Z' => 'bra', 'BraA04t15860Z' => 'bra', 'BraA05t19511Z' => 'bra', 'BraA05t22746Z' => 'bra', 'BraA09t35767Z' => 'bra', 'BraA09t40732Z' => 'bra', 'BraA10t45233Z' => 'bra', 'C03p38720' => 'bna', 'C03p43680' => 'bna', 'C04p06350' => 'bna', 'C04p31800' => 'bna', 'C05p58680' => 'bna', 'C07p52110' => 'bna', 'C08p35760' => 'bna', 'C09p01050' => 'bna', 'C09p72600' => 'bna', 'CAN.G106.2' => 'can', 'CAN.G1482.1' => 'can', 'CAN.G324.12' => 'can', 'CAN.G388.20' => 'can', 'CAN.G412.7' => 'can', 'CAN.G694.32' => 'can', 'CAN.G92.12' => 'can', 'CANSAT11G2353' => 'cansat', 'CANSAT21G1398' => 'cansat', 'CANSAT56G2456' => 'cansat', 'CANSAT56G3031' => 'cansat', 'CANSAT56G4539' => 'cansat', 'CARHR083680' => 'chi', 'CARHR171190' => 'chi', 'CARHR209010' => 'chi', 'CARHR229680' => 'chi', 'CARHR249490' => 'chi', 'Carub.0003s0844' => 'cru', 'Carub.0005s2755' => 'cru', 'Carub.0006s0322' => 'cru', 'Carub.0006s3586' => 'cru', 'Carub.0007s1855' => 'cru', 'Ca_07808_v3' => 'car', 'Ca_09535_v3' => 'car', 'Ca_10548_v3' => 'car', 'Ca_19913_v3' => 'car', 'Ca_19916_v3' => 'car', 'Ca_19975_v3' => 'car', 'CBR_g22876' => 'cbr', 'CBR_g22879' => 'cbr', 'CBR_g38491' => 'cbr', 'CBR_g54185' => 'cbr', 'CBR_g54190' => 'cbr', 'Cc02_g11020' => 'ccan', 'Cc02_g23920' => 'ccan', 'Cc02_g39860' => 'ccan', 'Cc02_g39870' => 'ccan', 'Cc03_g06760' => 'ccan', 'Cc06_g02450' => 'ccan', 'Cc09_g09450' => 'ccan', 'CDE02G1959' => 'cde', 'CDE04G0600' => 'cde', 'CDE07G1996' => 'cde', 'CDE07G2078' => 'cde', 'CDE11G0611' => 'cde', 'Cfa001683' => 'cfa', 'Cfa001734' => 'cfa', 'Cfa001737' => 'cfa', 'Cfa003751' => 'cfa', 'Cfa012019' => 'cfa', 'Cfa017353' => 'cfa', 'Cfa017732' => 'cfa', 'Cfa022464' => 'cfa', 'Ciclev10012400m.g' => 'ccl', 'Ciclev10021242m.g' => 'ccl', 'Ciclev10021302m.g' => 'ccl', 'Ciclev10021463m.g' => 'ccl', 'Ciclev10032359m.g' => 'ccl', 'CiPaw.01G081000' => 'cil', 'CiPaw.01G262500' => 'cil', 'CiPaw.01G269800' => 'cil', 'CiPaw.02G168400' => 'cil', 'CiPaw.05G119500' => 'cil', 'CiPaw.11G147300' => 'cil', 'ClCG01G003630' => 'cla', 'ClCG05G000510' => 'cla', 'ClCG05G002300' => 'cla', 'ClCG08G007650' => 'cla', 'ClCG10G021250' => 'cla', 'COL.COLO4_06218' => 'col', 'COL.COLO4_12538' => 'col', 'COL.COLO4_14775' => 'col', 'COL.COLO4_23875' => 'col', 'Cpa.g.sc141.16' => 'cpa', 'Cpa.g.sc169.16' => 'cpa', 'Cpa.g.sc244.4' => 'cpa', 'Cpa.g.sc244.5' => 'cpa', 'Cpa.g.sc29.87' => 'cpa', 'Cpa.g.sc53.115' => 'cpa', 'Cre03.g207502' => 'cre', 'Cre06.g277000' => 'cre', 'Cre09.g394050' => 'cre', 'CsaV3_3G007680' => 'csa', 'CsaV3_3G009710' => 'csa', 'CsaV3_3G034790' => 'csa', 'CsaV3_5G003750' => 'csa', 'CsaV3_6G036620' => 'csa', 'CSS0002288' => 'camsi', 'CSS0011250' => 'camsi', 'CSS0021619' => 'camsi', 'CSS0046701' => 'camsi', 'DCAR_006420' => 'dca', 'DCAR_006865' => 'dca', 'DCAR_008558' => 'dca', 'DCAR_028754' => 'dca', 'DCAR_028755' => 'dca', 'Dinv31218' => 'din', 'Dinv32371' => 'din', 'Dinv34250' => 'din', 'Dinv37156' => 'din', 'Dinv43704' => 'din', 'Duzib093G1811' => 'dzi', 'Duzib106G1622' => 'dzi', 'Duzib114G0504' => 'dzi', 'Duzib128G0338' => 'dzi', 'Duzib128G1577' => 'dzi', 'Duzib133G0104' => 'dzi', 'Duzib133G1080' => 'dzi', 'Duzib138G0324' => 'dzi', 'Duzib138G0394' => 'dzi', 'Duzib205G0122' => 'dzi', 'Duzib268G1020' => 'dzi', 'Duzib268G1359' => 'dzi', 'ECA232G3929' => 'eca', 'ECA236G2210' => 'eca', 'ECA236G2287' => 'eca', 'ECA240G4568' => 'eca', 'ECA247G0894' => 'eca', 'EL10Ac1g00200' => 'bvu', 'EL10Ac1g00886' => 'bvu', 'EL10As1g23091' => 'bvu', 'EL10As1g23092' => 'bvu', 'Eucgr.A01284' => 'egr', 'Eucgr.A01285' => 'egr', 'Eucgr.D02456' => 'egr', 'Eucgr.E00018' => 'egr', 'Eucgr.E01439' => 'egr', 'Eucgr.G02859' => 'egr', 'FAN01G0168' => 'fan', 'FAN01G0453' => 'fan', 'FAN01G2761' => 'fan', 'FAN02G1239' => 'fan', 'FAN03G0645' => 'fan', 'FAN03G2707' => 'fan', 'FAN03G2978' => 'fan', 'FAN04G0227' => 'fan', 'FAN06G0091' => 'fan', 'FAN06G1418' => 'fan', 'FAN06G1512' => 'fan', 'FAN06G1986' => 'fan', 'FAN06G2905' => 'fan', 'FAN06G4325' => 'fan', 'FAN08G0033' => 'fan', 'FAN09G0642' => 'fan', 'FAN10G1763' => 'fan', 'FAN10G2026' => 'fan', 'FAN10G2513' => 'fan', 'FAN10G3402' => 'fan', 'FAN10G3564' => 'fan', 'FAN10G3987' => 'fan', 'FAN13G1490' => 'fan', 'FAN14G5857' => 'fan', 'FAN18G1188' => 'fan', 'FvH4_5g00750' => 'fve', 'FvH4_6g13410' => 'fve', 'FvH4_7g11740' => 'fve', 'FvH4_7g17410' => 'fve', 'FvH4_7g18860' => 'fve', 'Glyma.01G099100' => 'gma', 'Glyma.01G142300' => 'gma', 'Glyma.03G025500' => 'gma', 'Glyma.03G069700' => 'gma', 'Glyma.03G260000' => 'gma', 'Glyma.09G269800' => 'gma', 'Glyma.10G208700' => 'gma', 'Glyma.18G220400' => 'gma', 'Glyma.20G182000' => 'gma', 'Gohir.A01G221726' => 'ghi', 'Gohir.A07G134600' => 'ghi', 'Gohir.A07G146000' => 'ghi', 'Gohir.A08G173900' => 'ghi', 'Gohir.A09G194900' => 'ghi', 'Gohir.A10G204100' => 'ghi', 'Gohir.A11G080600' => 'ghi', 'Gohir.A11G327500' => 'ghi', 'Gohir.A12G101800' => 'ghi', 'Gohir.D01G211200' => 'ghi', 'Gohir.D07G139200' => 'ghi', 'Gohir.D07G152100' => 'ghi', 'Gohir.D08G192600' => 'ghi', 'Gohir.D09G189200' => 'ghi', 'Gohir.D10G212000' => 'ghi', 'Gohir.D11G085200' => 'ghi', 'Gohir.D11G346400' => 'ghi', 'Gohir.D12G104800' => 'ghi', 'Gorai.001G151300' => 'gra', 'Gorai.001G174100' => 'gra', 'Gorai.002G257000' => 'gra', 'Gorai.004G202600' => 'gra', 'Gorai.007G090900' => 'gra', 'Gorai.007G376700' => 'gra', 'Gorai.008G114100' => 'gra', 'Gorai.011G237900' => 'gra', 'GSVIVG01005450001' => 'vvi', 'GSVIVG01016232001' => 'vvi', 'GSVIVG01026157001' => 'vvi', 'GSVIVG01027419001' => 'vvi', 'GSVIVG01027631001' => 'vvi', 'GSVIVG01034143001' => 'vvi', 'HanXRQChr03g0093921' => 'han', 'HanXRQChr04g0120001' => 'han', 'HanXRQChr04g0122561' => 'han', 'HanXRQChr09g0246851' => 'han', 'HanXRQChr10g0293311' => 'han', 'HanXRQChr13g0425231' => 'han', 'HanXRQChr16g0532571' => 'han', 'Haze_09050' => 'cav', 'Haze_15715' => 'cav', 'Haze_15716' => 'cav', 'Haze_16803' => 'cav', 'Haze_16850' => 'cav', 'Hma1.2p1_0301F.1_g118655' => 'hma', 'Hma1.2p1_0309F.1_g120590' => 'hma', 'Hma1.2p1_0936F.1_g238900' => 'hma', 'Hma1.2p1_3552F.1_g336740' => 'hma', 'HPP92_003520' => 'vpl', 'HPP92_006628' => 'vpl', 'HPP92_006645' => 'vpl', 'HPP92_014669' => 'vpl', 'HPP92_015077' => 'vpl', 'Hund16742' => 'sun', 'Hund17022' => 'sun', 'Lalb_Chr02g0152131' => 'lal', 'Lalb_Chr05g0225371' => 'lal', 'Lalb_Chr07g0189841' => 'lal', 'Lalb_Chr07g0192961' => 'lal', 'Lalb_Chr12g0208221' => 'lal', 'Lalb_Chr13g0291211' => 'lal', 'Lalb_Chr13g0291781' => 'lal', 'Lalb_Chr18g0044651' => 'lal', 'Lalb_Chr21g0313731' => 'lal', 'Lj1g0022533' => 'lja', 'Lj2A18T50' => 'lonja', 'Lj2A92G93' => 'lonja', 'Lj3A965T73' => 'lonja', 'Lj3g0000673' => 'lja', 'Lj3g0002666' => 'lja', 'Lj4g0016985' => 'lja', 'Lj5g0003625' => 'lja', 'Lj7A529G36' => 'lonja', 'Lj9A569T49' => 'lonja', 'Lj9A604T63' => 'lonja', 'Lsat_1_v5_gn_3_132060' => 'lsa', 'Lsat_1_v5_gn_4_68941' => 'lsa', 'Lsat_1_v5_gn_5_95580' => 'lsa', 'Lsat_1_v5_gn_7_161' => 'lsa', 'Lsat_1_v5_gn_7_7041' => 'lsa', 'Lsat_1_v5_gn_9_33481' => 'lsa', 'Lsat_1_v5_gn_9_68260' => 'lsa', 'Manes.01G073100' => 'mes', 'Manes.01G266300' => 'mes', 'Manes.02G033300' => 'mes', 'Manes.05G017900' => 'mes', 'Manes.05G046100' => 'mes', 'Manes.08G080900' => 'mes', 'Manes.10G049400' => 'mes', 'Mapoly0009s0186' => 'mpo', 'Mapoly0036s0118' => 'mpo', 'Mapoly0101s0046' => 'mpo', 'MBI04_g30218_MAGBIO' => 'mbi', 'MBI04_g35564_MAGBIO' => 'mbi', 'MBI12_g34011_MAGBIO' => 'mbi', 'MBI14_g04655_MAGBIO' => 'mbi', 'MCO07G653' => 'mco', 'MCO10G173' => 'mco', 'MD01G1087100' => 'mdo', 'MD01G1104200' => 'mdo', 'MD02G1205100' => 'mdo', 'MD04G1079200' => 'mdo', 'MD04G1131400' => 'mdo', 'MD07G1121600' => 'mdo', 'MD07G1157300' => 'mdo', 'MD07G1171000' => 'mdo', 'MD12G1144500' => 'mdo', 'Medtr1g094610' => 'mtr', 'Medtr4g021795' => 'mtr', 'Medtr4g023760' => 'mtr', 'Medtr7g118050' => 'mtr', 'MELO3C005582.2' => 'cme', 'MELO3C005989.2' => 'cme', 'MELO3C006192.2' => 'cme', 'MELO3C009248.2' => 'cme', 'MELO3C019817.2' => 'cme', 'Migut.B01625' => 'egut', 'Migut.B01915' => 'egut', 'Migut.F01721' => 'egut', 'Migut.J00314' => 'egut', 'MSTRG.20742' => 'ama', 'MSTRG.8134' => 'ama', 'Nitab4.5_0000096g0010' => 'nta', 'Nitab4.5_0000202g0030' => 'nta', 'Nitab4.5_0000216g0370' => 'nta', 'Nitab4.5_0000457g0230' => 'nta', 'Nitab4.5_0001702g0170' => 'nta', 'Nitab4.5_0003607g0010' => 'nta', 'Nitab4.5_0004917g0020' => 'nta', 'Nitab4.5_0007059g0010' => 'nta', 'Nitab4.5_0007184g0010' => 'nta', 'Nitab4.5_0007346g0020' => 'nta', 'Nn1g00410' => 'nnu', 'Nn1g01252' => 'nnu', 'Nn2g11168' => 'nnu', 'Nn2g13403' => 'nnu', 'Nn2g13760' => 'nnu', 'Nn4g26380' => 'nnu', 'Oeu000806.2' => 'oeu', 'Oeu005788.1' => 'oeu', 'Oeu006900.3' => 'oeu', 'Oeu007797.1' => 'oeu', 'Oeu011932.1' => 'oeu', 'Oeu022739.1' => 'oeu', 'Oeu037918.1' => 'oeu', 'Oeu055490.2' => 'oeu', 'Os01g0844400' => 'osa', 'Os02g0819100' => 'osa', 'Os03g0804300' => 'osa', 'Os05g0458000' => 'osa', 'Os07g0467800' => 'osa', 'Os12g0602200' => 'osa', 'Peaxi162Scf00013g03444' => 'pax', 'Peaxi162Scf00094g01120' => 'pax', 'Peaxi162Scf00191g01211' => 'pax', 'Peaxi162Scf00238g01110' => 'pax', 'Peaxi162Scf00330g00719' => 'pax', 'Peaxi162Scf00627g00018' => 'pax', 'PGR031G2686' => 'pgr', 'PGR042G0809' => 'pgr', 'PGR142G0193' => 'pgr', 'PGSC0003DMG400011066' => 'stu', 'PGSC0003DMG400012041' => 'stu', 'PGSC0003DMG400013678' => 'stu', 'PGSC0003DMG400023477' => 'stu', 'PGSC0003DMG400025956' => 'stu', 'PGSC0003DMG401019151' => 'stu', 'Phvul.006G116400' => 'pvu', 'Phvul.007G097300' => 'pvu', 'Phvul.010G015000' => 'pvu', 'Phvul.010G083900' => 'pvu', 'Potri.001G117100' => 'ptr', 'Potri.002G147300' => 'ptr', 'Potri.003G115600' => 'ptr', 'Potri.006G087400' => 'ptr', 'Potri.010G226100' => 'ptr', 'Potri.014G069200' => 'ptr', 'Potri.014G104000' => 'ptr', 'Potri.016G100200' => 'ptr', 'Pp3c10_20450' => 'ppa', 'Pp3c1_42400' => 'ppa', 'Pp3c3_24390' => 'ppa', 'Pp3c3_2860' => 'ppa', 'PRCOL_00003193' => 'pco', 'Prupe.2G144500' => 'ppe', 'Prupe.2G195700' => 'ppe', 'Prupe.2G209800' => 'ppe', 'Prupe.5G080000' => 'ppe', 'Prupe.6G257900' => 'ppe', 'Psat3g001160' => 'psa', 'Psat6g181880' => 'psa', 'Psat7g233720' => 'psa', 'PSO063G7587' => 'pso', 'PSO339G2145' => 'pso', 'PSO339G3369' => 'pso', 'PSO478G2747' => 'pso', 'PSO513G0140' => 'pso', 'PSO782G1614' => 'pso', 'PSO782G4889' => 'pso', 'PSO782G5485' => 'pso', 'PSO801G0241' => 'pso', 'QL07p048854' => 'qlo', 'QL08p046745' => 'qlo', 'QL08p052606' => 'qlo', 'QL08p053414' => 'qlo', 'QL08p054868' => 'qlo', 'RcHm_v2.0_Chr1g0350251' => 'rch', 'RcHm_v2.0_Chr1g0360851' => 'rch', 'RcHm_v2.0_Chr1g0362791' => 'rch', 'RcHm_v2.0_Chr3g0466281' => 'rch', 'RcHm_v2.0_Chr7g0201481' => 'rch', 'Rhsim01G0148600' => 'rsi', 'Rhsim05G0194400' => 'rsi', 'Rhsim07G0000700' => 'rsi', 'Rhsim07G0000800' => 'rsi', 'Rhsim07G0027900' => 'rsi', 'Rhsim09G0149500' => 'rsi', 'RhsimUnG0186900' => 'rsi', 'Sabra01G0089900' => 'sbr', 'Sabra02G0114700' => 'sbr', 'Sabra02G0116300' => 'sbr', 'Sabra03G0080100' => 'sbr', 'Sabra08G0024300' => 'sbr', 'Sabra10G0174300' => 'sbr', 'Sabra14G0048900' => 'sbr', 'Sabra14G0076500' => 'sbr', 'SalBow5G2513' => 'sbo', 'Sc01g0002300' => 'sci', 'Sc01g0004450' => 'sci', 'Sc06g0001680' => 'sci', 'Sc23g0003580' => 'sci', 'Sed0000913' => 'sed', 'Sed0001655' => 'sed', 'Sed0007745' => 'sed', 'Sed0010951' => 'sed', 'Sed0017599' => 'sed', 'Sed0021405' => 'sed', 'Sed0022810' => 'sed', 'SEGI_07099' => 'sgi', 'SEGI_11931' => 'sgi', 'SEGI_13187' => 'sgi', 'SEGI_29958' => 'sgi', 'SEGI_36351' => 'sgi', 'SGA_v2.0_scaffold126G33770' => 'sas', 'SGA_v2.0_scaffold153G37003' => 'sas', 'SGA_v2.0_scaffold2G01359' => 'sas', 'SGA_v2.0_scaffold5G03064' => 'sas', 'SGA_v2.0_scaffold95G28903' => 'sas', 'SHI12701' => 'shi', 'SHI26410' => 'shi', 'SHI38997' => 'shi', 'SHI53759' => 'shi', 'SHI53886' => 'shi', 'SHI54714' => 'shi', 'SMO011G0041' => 'smo', 'SMO146G0251' => 'smo', 'SMO160G0004' => 'smo', 'SMO174G0057' => 'smo', 'SMO244G0089' => 'smo', 'SMO296G0011' => 'smo', 'Solyc01g091280.3' => 'sly', 'Solyc05g047610.3' => 'sly', 'Solyc05g047640.3' => 'sly', 'Solyc05g055630.3' => 'sly', 'Solyc10g018160.2' => 'sly', 'Solyc10g084820.2' => 'sly', 'Solyc10g086565.2' => 'sly', 'Sopen01g037030' => 'spe', 'Sopen05g027920' => 'spe', 'Sopen05g034070' => 'spe', 'Sopen10g007260' => 'spe', 'Sopen10g034260' => 'spe', 'Sopen10g035950' => 'spe', 'Sp3g07710' => 'spa', 'Sp4g27420' => 'spa', 'Sp5g02450' => 'spa', 'Sp6g01280' => 'spa', 'Sp6g38480' => 'spa', 'Sp7g20780' => 'spa', 'TAR374G1413' => 'tar', 'TAR623G1777' => 'tar', 'TAR629G2370' => 'tar', 'TAR633G1759' => 'tar', 'TAR636G3387' => 'tar', 'THA.LOC104802447' => 'tha', 'THA.LOC104813916' => 'tha', 'THA.LOC104816423' => 'tha', 'THA.LOC104817246' => 'tha', 'THA.LOC104825895' => 'tha', 'Thecc.01G335200' => 'tca', 'Thecc.01G377400' => 'tca', 'Thecc.03G262200' => 'tca', 'Thecc.05G036800' => 'tca', 'Thecc.10G080500' => 'tca', 'Thecc.10G080800' => 'tca', 'Thhalv10001560m.g' => 'esa', 'Thhalv10006120m.g' => 'esa', 'Thhalv10014375m.g' => 'esa', 'Thhalv10021264m.g' => 'esa', 'Thhalv10028856m.g' => 'esa', 'TPR.G1914' => 'tpr', 'TPR.G4757' => 'tpr', 'TPR.G5595' => 'tpr', 'TWI14G0952' => 'twi', 'TWI14G1307' => 'twi', 'TWI38G2143' => 'twi', 'TWI59G0826' => 'twi', 'TWI77G0527' => 'twi', 'TWI81G0150' => 'twi', 'unitig_21.g21018' => 'ugi', 'unitig_26.g9725' => 'ugi', 'unitig_744.g24653' => 'ugi', 'unitig_749.g13778' => 'ugi', 'unitig_899.g15035' => 'ugi', 'vmacro04296' => 'vma', 'vmacro04852' => 'vma', 'vmacro13404' => 'vma', 'vmacro20169' => 'vma', 'vmacro21014' => 'vma', 'VMungo0331G0237' => 'vmu', 'VMungo0331G0706' => 'vmu', 'VMungo0331G1361' => 'vmu', 'VMungo0331G1489' => 'vmu', 'VMungo0540G1037' => 'vmu', 'VMungo0720G2487' => 'vmu', 'VMungo0720G2721' => 'vmu', 'Zm00001eb086860' => 'zma', 'Zm00001eb104760' => 'zma', 'Zm00001eb148220' => 'zma', 'Zm00001eb259030' => 'zma', 'Zm00001eb289590' => 'zma', 'Zm00001eb420150' => 'zma' ) $gf_id = 'HOM05D000968' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000968' ) $data_identifier = 'HOM05D000968' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 19, 'bol' => (int) 9, 'bra' => (int) 12, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 5, 'ccan' => (int) 7, 'cde' => (int) 5, 'cfa' => (int) 8, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 4, 'dca' => (int) 5, 'din' => (int) 5, 'dzi' => (int) 12, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 25, 'fve' => (int) 5, 'gma' => (int) 9, 'ghi' => (int) 18, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 7, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 5, 'sun' => (int) 2, 'lal' => (int) 9, 'lja' => (int) 5, 'lonja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 9, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 2, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 3, 'stu' => (int) 6, 'pvu' => (int) 4, 'ptr' => (int) 8, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 3, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 1, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 5, 'sas' => (int) 5, 'shi' => (int) 6, 'smo' => (int) 6, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 3, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420150' $species_info = array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ) $local_species = 'fve' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000968', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p31690' => 'bna', 'A03p36040' => 'bna', 'A03p53730' => 'bna', 'A04p01410' => 'bna', 'A05p05420' => 'bna', 'A05p39630' => 'bna', 'A05p39640' => 'bna', 'A09p00970' => 'bna', 'A09p53060' => 'bna', 'A10p31890' => 'bna', 'Aa31LG10G15040' => 'aar', 'Aa31LG1G21090' => 'aar', 'Aa31LG1G26900' => 'aar', 'Aa31LG3G1820' => 'aar', 'Aa31LG5G1100' => 'aar', 'Aa31LG6G4740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2265' => 'aag', 'Actinidia07998' => 'ach', 'Actinidia11266' => 'ach', 'Actinidia12682' => 'ach', 'Actinidia26479' => 'ach', 'Actinidia31406' => 'ach', 'Actinidia32437' => 'ach', 'Actinidia38862' => 'ach', 'Ah.05g174230' => 'amhyb', 'Ah.05g179070' => 'amhyb', 'Ah.05g179090' => 'amhyb', 'Ah.12g059950' => 'amhyb', 'AL3G20480' => 'aly', 'AL4G44520' => 'aly', 'AL5G43110' => 'aly', 'AL6G13890' => 'aly', 'AL6G52620' => 'aly', 'AL7G30830' => 'aly', 'Aqoxy1G00899' => 'aox', 'Aqoxy5G04333' => 'aox', 'Aqoxy7G00641' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3IZ0NN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4EF6AW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W9P8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79GA3M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C43NQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFCU6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G95YVJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCHK29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LU1UG8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX91RN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGB4B1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8DA0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9H7JI' => 'arhy', 'AT3G09320' => 'ath', 'AT3G60800' => 'ath', 'AT4G00840' => 'ath', 'AT4G22750' => 'ath', 'AT5G04270' => 'ath', 'ATR0090G003' => 'atr', 'ATR0559G349' => 'atr', 'ATR0680G261' => 'atr', 'ATR0810G048' => 'atr', 'Atru.chr12.831' => 'acertr', 'Atru.chr5.303' => 'acertr', 'Atru.chr5.748' => 'acertr', 'Atru.chr8.1999' => 'acertr', 'Atru.chr9.1436' => 'acertr', 'AUR62004211' => 'cqu', 'AUR62004548' => 'cqu', 'AUR62013637' => 'cqu', 'AUR62022662' => 'cqu', 'AUR62025777' => 'cqu', 'AUR62042386' => 'cqu', 'BcaB01g02310' => 'bca', 'BcaB01g06062' => 'bca', 'BcaB02g08975' => 'bca', 'BcaB02g08980' => 'bca', 'BcaC01g04228' => 'bca', 'BcaC01g06830' => 'bca', 'BcaC02g10186' => 'bca', 'BcaC02g12214' => 'bca', 'BcaC04g24101' => 'bca', 'BcaC05g29520' => 'bca', 'BcaC05g29661' => 'bca', 'BcaC06g32130' => 'bca', 'BcaC06g32131' => 'bca', 'BcaC07g40601' => 'bca', 'BcaC07g42641' => 'bca', 'BcaNung01038' => 'bca', 'BcaNung01676' => 'bca', 'BcaNung02480' => 'bca', 'BcaNung07376' => 'bca', 'BolC3t16146H' => 'bol', 'BolC3t16637H' => 'bol', 'BolC4t22257H' => 'bol', 'BolC4t24728H' => 'bol', 'BolC5t34517H' => 'bol', 'BolC7t45703H' => 'bol', 'BolC8t51166H' => 'bol', 'BolC9t53038H' => 'bol', 'BolC9t60000H' => 'bol', 'BraA01t01345Z' => 'bra', 'BraA01t01346Z' => 'bra', 'BraA01t01348Z' => 'bra', 'BraA03t12347Z' => 'bra', 'BraA03t12775Z' => 'bra', 'BraA03t14439Z' => 'bra', 'BraA04t15860Z' => 'bra', 'BraA05t19511Z' => 'bra', 'BraA05t22746Z' => 'bra', 'BraA09t35767Z' => 'bra', 'BraA09t40732Z' => 'bra', 'BraA10t45233Z' => 'bra', 'C03p38720' => 'bna', 'C03p43680' => 'bna', 'C04p06350' => 'bna', 'C04p31800' => 'bna', 'C05p58680' => 'bna', 'C07p52110' => 'bna', 'C08p35760' => 'bna', 'C09p01050' => 'bna', 'C09p72600' => 'bna', 'CAN.G106.2' => 'can', 'CAN.G1482.1' => 'can', 'CAN.G324.12' => 'can', 'CAN.G388.20' => 'can', 'CAN.G412.7' => 'can', 'CAN.G694.32' => 'can', 'CAN.G92.12' => 'can', 'CANSAT11G2353' => 'cansat', 'CANSAT21G1398' => 'cansat', 'CANSAT56G2456' => 'cansat', 'CANSAT56G3031' => 'cansat', 'CANSAT56G4539' => 'cansat', 'CARHR083680' => 'chi', 'CARHR171190' => 'chi', 'CARHR209010' => 'chi', 'CARHR229680' => 'chi', 'CARHR249490' => 'chi', 'Carub.0003s0844' => 'cru', 'Carub.0005s2755' => 'cru', 'Carub.0006s0322' => 'cru', 'Carub.0006s3586' => 'cru', 'Carub.0007s1855' => 'cru', 'Ca_07808_v3' => 'car', 'Ca_09535_v3' => 'car', 'Ca_10548_v3' => 'car', 'Ca_19913_v3' => 'car', 'Ca_19916_v3' => 'car', 'Ca_19975_v3' => 'car', 'CBR_g22876' => 'cbr', 'CBR_g22879' => 'cbr', 'CBR_g38491' => 'cbr', 'CBR_g54185' => 'cbr', 'CBR_g54190' => 'cbr', 'Cc02_g11020' => 'ccan', 'Cc02_g23920' => 'ccan', 'Cc02_g39860' => 'ccan', 'Cc02_g39870' => 'ccan', 'Cc03_g06760' => 'ccan', 'Cc06_g02450' => 'ccan', 'Cc09_g09450' => 'ccan', 'CDE02G1959' => 'cde', 'CDE04G0600' => 'cde', 'CDE07G1996' => 'cde', 'CDE07G2078' => 'cde', 'CDE11G0611' => 'cde', 'Cfa001683' => 'cfa', 'Cfa001734' => 'cfa', 'Cfa001737' => 'cfa', 'Cfa003751' => 'cfa', 'Cfa012019' => 'cfa', 'Cfa017353' => 'cfa', 'Cfa017732' => 'cfa', 'Cfa022464' => 'cfa', 'Ciclev10012400m.g' => 'ccl', 'Ciclev10021242m.g' => 'ccl', 'Ciclev10021302m.g' => 'ccl', 'Ciclev10021463m.g' => 'ccl', 'Ciclev10032359m.g' => 'ccl', 'CiPaw.01G081000' => 'cil', 'CiPaw.01G262500' => 'cil', 'CiPaw.01G269800' => 'cil', 'CiPaw.02G168400' => 'cil', 'CiPaw.05G119500' => 'cil', 'CiPaw.11G147300' => 'cil', 'ClCG01G003630' => 'cla', 'ClCG05G000510' => 'cla', 'ClCG05G002300' => 'cla', 'ClCG08G007650' => 'cla', 'ClCG10G021250' => 'cla', 'COL.COLO4_06218' => 'col', 'COL.COLO4_12538' => 'col', 'COL.COLO4_14775' => 'col', 'COL.COLO4_23875' => 'col', 'Cpa.g.sc141.16' => 'cpa', 'Cpa.g.sc169.16' => 'cpa', 'Cpa.g.sc244.4' => 'cpa', 'Cpa.g.sc244.5' => 'cpa', 'Cpa.g.sc29.87' => 'cpa', 'Cpa.g.sc53.115' => 'cpa', 'Cre03.g207502' => 'cre', 'Cre06.g277000' => 'cre', 'Cre09.g394050' => 'cre', 'CsaV3_3G007680' => 'csa', 'CsaV3_3G009710' => 'csa', 'CsaV3_3G034790' => 'csa', 'CsaV3_5G003750' => 'csa', 'CsaV3_6G036620' => 'csa', 'CSS0002288' => 'camsi', 'CSS0011250' => 'camsi', 'CSS0021619' => 'camsi', 'CSS0046701' => 'camsi', 'DCAR_006420' => 'dca', 'DCAR_006865' => 'dca', 'DCAR_008558' => 'dca', 'DCAR_028754' => 'dca', 'DCAR_028755' => 'dca', 'Dinv31218' => 'din', 'Dinv32371' => 'din', 'Dinv34250' => 'din', 'Dinv37156' => 'din', 'Dinv43704' => 'din', 'Duzib093G1811' => 'dzi', 'Duzib106G1622' => 'dzi', 'Duzib114G0504' => 'dzi', 'Duzib128G0338' => 'dzi', 'Duzib128G1577' => 'dzi', 'Duzib133G0104' => 'dzi', 'Duzib133G1080' => 'dzi', 'Duzib138G0324' => 'dzi', 'Duzib138G0394' => 'dzi', 'Duzib205G0122' => 'dzi', 'Duzib268G1020' => 'dzi', 'Duzib268G1359' => 'dzi', 'ECA232G3929' => 'eca', 'ECA236G2210' => 'eca', 'ECA236G2287' => 'eca', 'ECA240G4568' => 'eca', 'ECA247G0894' => 'eca', 'EL10Ac1g00200' => 'bvu', 'EL10Ac1g00886' => 'bvu', 'EL10As1g23091' => 'bvu', 'EL10As1g23092' => 'bvu', 'Eucgr.A01284' => 'egr', 'Eucgr.A01285' => 'egr', 'Eucgr.D02456' => 'egr', 'Eucgr.E00018' => 'egr', 'Eucgr.E01439' => 'egr', 'Eucgr.G02859' => 'egr', 'FAN01G0168' => 'fan', 'FAN01G0453' => 'fan', 'FAN01G2761' => 'fan', 'FAN02G1239' => 'fan', 'FAN03G0645' => 'fan', 'FAN03G2707' => 'fan', 'FAN03G2978' => 'fan', 'FAN04G0227' => 'fan', 'FAN06G0091' => 'fan', 'FAN06G1418' => 'fan', 'FAN06G1512' => 'fan', 'FAN06G1986' => 'fan', 'FAN06G2905' => 'fan', 'FAN06G4325' => 'fan', 'FAN08G0033' => 'fan', 'FAN09G0642' => 'fan', 'FAN10G1763' => 'fan', 'FAN10G2026' => 'fan', 'FAN10G2513' => 'fan', 'FAN10G3402' => 'fan', 'FAN10G3564' => 'fan', 'FAN10G3987' => 'fan', 'FAN13G1490' => 'fan', 'FAN14G5857' => 'fan', 'FAN18G1188' => 'fan', 'FvH4_5g00750' => 'fve', 'FvH4_6g13410' => 'fve', 'FvH4_7g11740' => 'fve', 'FvH4_7g17410' => 'fve', 'FvH4_7g18860' => 'fve', 'Glyma.01G099100' => 'gma', 'Glyma.01G142300' => 'gma', 'Glyma.03G025500' => 'gma', 'Glyma.03G069700' => 'gma', 'Glyma.03G260000' => 'gma', 'Glyma.09G269800' => 'gma', 'Glyma.10G208700' => 'gma', 'Glyma.18G220400' => 'gma', 'Glyma.20G182000' => 'gma', 'Gohir.A01G221726' => 'ghi', 'Gohir.A07G134600' => 'ghi', 'Gohir.A07G146000' => 'ghi', 'Gohir.A08G173900' => 'ghi', 'Gohir.A09G194900' => 'ghi', 'Gohir.A10G204100' => 'ghi', 'Gohir.A11G080600' => 'ghi', 'Gohir.A11G327500' => 'ghi', 'Gohir.A12G101800' => 'ghi', 'Gohir.D01G211200' => 'ghi', 'Gohir.D07G139200' => 'ghi', 'Gohir.D07G152100' => 'ghi', 'Gohir.D08G192600' => 'ghi', 'Gohir.D09G189200' => 'ghi', 'Gohir.D10G212000' => 'ghi', 'Gohir.D11G085200' => 'ghi', 'Gohir.D11G346400' => 'ghi', 'Gohir.D12G104800' => 'ghi', 'Gorai.001G151300' => 'gra', 'Gorai.001G174100' => 'gra', 'Gorai.002G257000' => 'gra', 'Gorai.004G202600' => 'gra', 'Gorai.007G090900' => 'gra', 'Gorai.007G376700' => 'gra', 'Gorai.008G114100' => 'gra', 'Gorai.011G237900' => 'gra', 'GSVIVG01005450001' => 'vvi', 'GSVIVG01016232001' => 'vvi', 'GSVIVG01026157001' => 'vvi', 'GSVIVG01027419001' => 'vvi', 'GSVIVG01027631001' => 'vvi', 'GSVIVG01034143001' => 'vvi', 'HanXRQChr03g0093921' => 'han', 'HanXRQChr04g0120001' => 'han', 'HanXRQChr04g0122561' => 'han', 'HanXRQChr09g0246851' => 'han', 'HanXRQChr10g0293311' => 'han', 'HanXRQChr13g0425231' => 'han', 'HanXRQChr16g0532571' => 'han', 'Haze_09050' => 'cav', 'Haze_15715' => 'cav', 'Haze_15716' => 'cav', 'Haze_16803' => 'cav', 'Haze_16850' => 'cav', 'Hma1.2p1_0301F.1_g118655' => 'hma', 'Hma1.2p1_0309F.1_g120590' => 'hma', 'Hma1.2p1_0936F.1_g238900' => 'hma', 'Hma1.2p1_3552F.1_g336740' => 'hma', 'HPP92_003520' => 'vpl', 'HPP92_006628' => 'vpl', 'HPP92_006645' => 'vpl', 'HPP92_014669' => 'vpl', 'HPP92_015077' => 'vpl', 'Hund16742' => 'sun', 'Hund17022' => 'sun', 'Lalb_Chr02g0152131' => 'lal', 'Lalb_Chr05g0225371' => 'lal', 'Lalb_Chr07g0189841' => 'lal', 'Lalb_Chr07g0192961' => 'lal', 'Lalb_Chr12g0208221' => 'lal', 'Lalb_Chr13g0291211' => 'lal', 'Lalb_Chr13g0291781' => 'lal', 'Lalb_Chr18g0044651' => 'lal', 'Lalb_Chr21g0313731' => 'lal', 'Lj1g0022533' => 'lja', 'Lj2A18T50' => 'lonja', 'Lj2A92G93' => 'lonja', 'Lj3A965T73' => 'lonja', 'Lj3g0000673' => 'lja', 'Lj3g0002666' => 'lja', 'Lj4g0016985' => 'lja', 'Lj5g0003625' => 'lja', 'Lj7A529G36' => 'lonja', 'Lj9A569T49' => 'lonja', 'Lj9A604T63' => 'lonja', 'Lsat_1_v5_gn_3_132060' => 'lsa', 'Lsat_1_v5_gn_4_68941' => 'lsa', 'Lsat_1_v5_gn_5_95580' => 'lsa', 'Lsat_1_v5_gn_7_161' => 'lsa', 'Lsat_1_v5_gn_7_7041' => 'lsa', 'Lsat_1_v5_gn_9_33481' => 'lsa', 'Lsat_1_v5_gn_9_68260' => 'lsa', 'Manes.01G073100' => 'mes', 'Manes.01G266300' => 'mes', 'Manes.02G033300' => 'mes', 'Manes.05G017900' => 'mes', 'Manes.05G046100' => 'mes', 'Manes.08G080900' => 'mes', 'Manes.10G049400' => 'mes', 'Mapoly0009s0186' => 'mpo', 'Mapoly0036s0118' => 'mpo', 'Mapoly0101s0046' => 'mpo', 'MBI04_g30218_MAGBIO' => 'mbi', 'MBI04_g35564_MAGBIO' => 'mbi', 'MBI12_g34011_MAGBIO' => 'mbi', 'MBI14_g04655_MAGBIO' => 'mbi', 'MCO07G653' => 'mco', 'MCO10G173' => 'mco', 'MD01G1087100' => 'mdo', 'MD01G1104200' => 'mdo', 'MD02G1205100' => 'mdo', 'MD04G1079200' => 'mdo', 'MD04G1131400' => 'mdo', 'MD07G1121600' => 'mdo', 'MD07G1157300' => 'mdo', 'MD07G1171000' => 'mdo', 'MD12G1144500' => 'mdo', 'Medtr1g094610' => 'mtr', 'Medtr4g021795' => 'mtr', 'Medtr4g023760' => 'mtr', 'Medtr7g118050' => 'mtr', 'MELO3C005582.2' => 'cme', 'MELO3C005989.2' => 'cme', 'MELO3C006192.2' => 'cme', 'MELO3C009248.2' => 'cme', 'MELO3C019817.2' => 'cme', 'Migut.B01625' => 'egut', 'Migut.B01915' => 'egut', 'Migut.F01721' => 'egut', 'Migut.J00314' => 'egut', 'MSTRG.20742' => 'ama', 'MSTRG.8134' => 'ama', 'Nitab4.5_0000096g0010' => 'nta', 'Nitab4.5_0000202g0030' => 'nta', 'Nitab4.5_0000216g0370' => 'nta', 'Nitab4.5_0000457g0230' => 'nta', 'Nitab4.5_0001702g0170' => 'nta', 'Nitab4.5_0003607g0010' => 'nta', 'Nitab4.5_0004917g0020' => 'nta', 'Nitab4.5_0007059g0010' => 'nta', 'Nitab4.5_0007184g0010' => 'nta', 'Nitab4.5_0007346g0020' => 'nta', 'Nn1g00410' => 'nnu', 'Nn1g01252' => 'nnu', 'Nn2g11168' => 'nnu', 'Nn2g13403' => 'nnu', 'Nn2g13760' => 'nnu', 'Nn4g26380' => 'nnu', 'Oeu000806.2' => 'oeu', 'Oeu005788.1' => 'oeu', 'Oeu006900.3' => 'oeu', 'Oeu007797.1' => 'oeu', 'Oeu011932.1' => 'oeu', 'Oeu022739.1' => 'oeu', 'Oeu037918.1' => 'oeu', 'Oeu055490.2' => 'oeu', 'Os01g0844400' => 'osa', 'Os02g0819100' => 'osa', 'Os03g0804300' => 'osa', 'Os05g0458000' => 'osa', 'Os07g0467800' => 'osa', 'Os12g0602200' => 'osa', 'Peaxi162Scf00013g03444' => 'pax', 'Peaxi162Scf00094g01120' => 'pax', 'Peaxi162Scf00191g01211' => 'pax', 'Peaxi162Scf00238g01110' => 'pax', 'Peaxi162Scf00330g00719' => 'pax', 'Peaxi162Scf00627g00018' => 'pax', 'PGR031G2686' => 'pgr', 'PGR042G0809' => 'pgr', 'PGR142G0193' => 'pgr', 'PGSC0003DMG400011066' => 'stu', 'PGSC0003DMG400012041' => 'stu', 'PGSC0003DMG400013678' => 'stu', 'PGSC0003DMG400023477' => 'stu', 'PGSC0003DMG400025956' => 'stu', 'PGSC0003DMG401019151' => 'stu', 'Phvul.006G116400' => 'pvu', 'Phvul.007G097300' => 'pvu', 'Phvul.010G015000' => 'pvu', 'Phvul.010G083900' => 'pvu', 'Potri.001G117100' => 'ptr', 'Potri.002G147300' => 'ptr', 'Potri.003G115600' => 'ptr', 'Potri.006G087400' => 'ptr', 'Potri.010G226100' => 'ptr', 'Potri.014G069200' => 'ptr', 'Potri.014G104000' => 'ptr', 'Potri.016G100200' => 'ptr', 'Pp3c10_20450' => 'ppa', 'Pp3c1_42400' => 'ppa', 'Pp3c3_24390' => 'ppa', 'Pp3c3_2860' => 'ppa', 'PRCOL_00003193' => 'pco', 'Prupe.2G144500' => 'ppe', 'Prupe.2G195700' => 'ppe', 'Prupe.2G209800' => 'ppe', 'Prupe.5G080000' => 'ppe', 'Prupe.6G257900' => 'ppe', 'Psat3g001160' => 'psa', 'Psat6g181880' => 'psa', 'Psat7g233720' => 'psa', 'PSO063G7587' => 'pso', 'PSO339G2145' => 'pso', 'PSO339G3369' => 'pso', 'PSO478G2747' => 'pso', 'PSO513G0140' => 'pso', 'PSO782G1614' => 'pso', 'PSO782G4889' => 'pso', 'PSO782G5485' => 'pso', 'PSO801G0241' => 'pso', 'QL07p048854' => 'qlo', 'QL08p046745' => 'qlo', 'QL08p052606' => 'qlo', 'QL08p053414' => 'qlo', 'QL08p054868' => 'qlo', 'RcHm_v2.0_Chr1g0350251' => 'rch', 'RcHm_v2.0_Chr1g0360851' => 'rch', 'RcHm_v2.0_Chr1g0362791' => 'rch', 'RcHm_v2.0_Chr3g0466281' => 'rch', 'RcHm_v2.0_Chr7g0201481' => 'rch', 'Rhsim01G0148600' => 'rsi', 'Rhsim05G0194400' => 'rsi', 'Rhsim07G0000700' => 'rsi', 'Rhsim07G0000800' => 'rsi', 'Rhsim07G0027900' => 'rsi', 'Rhsim09G0149500' => 'rsi', 'RhsimUnG0186900' => 'rsi', 'Sabra01G0089900' => 'sbr', 'Sabra02G0114700' => 'sbr', 'Sabra02G0116300' => 'sbr', 'Sabra03G0080100' => 'sbr', 'Sabra08G0024300' => 'sbr', 'Sabra10G0174300' => 'sbr', 'Sabra14G0048900' => 'sbr', 'Sabra14G0076500' => 'sbr', 'SalBow5G2513' => 'sbo', 'Sc01g0002300' => 'sci', 'Sc01g0004450' => 'sci', 'Sc06g0001680' => 'sci', 'Sc23g0003580' => 'sci', 'Sed0000913' => 'sed', 'Sed0001655' => 'sed', 'Sed0007745' => 'sed', 'Sed0010951' => 'sed', 'Sed0017599' => 'sed', 'Sed0021405' => 'sed', 'Sed0022810' => 'sed', 'SEGI_07099' => 'sgi', 'SEGI_11931' => 'sgi', 'SEGI_13187' => 'sgi', 'SEGI_29958' => 'sgi', 'SEGI_36351' => 'sgi', 'SGA_v2.0_scaffold126G33770' => 'sas', 'SGA_v2.0_scaffold153G37003' => 'sas', 'SGA_v2.0_scaffold2G01359' => 'sas', 'SGA_v2.0_scaffold5G03064' => 'sas', 'SGA_v2.0_scaffold95G28903' => 'sas', 'SHI12701' => 'shi', 'SHI26410' => 'shi', 'SHI38997' => 'shi', 'SHI53759' => 'shi', 'SHI53886' => 'shi', 'SHI54714' => 'shi', 'SMO011G0041' => 'smo', 'SMO146G0251' => 'smo', 'SMO160G0004' => 'smo', 'SMO174G0057' => 'smo', 'SMO244G0089' => 'smo', 'SMO296G0011' => 'smo', 'Solyc01g091280.3' => 'sly', 'Solyc05g047610.3' => 'sly', 'Solyc05g047640.3' => 'sly', 'Solyc05g055630.3' => 'sly', 'Solyc10g018160.2' => 'sly', 'Solyc10g084820.2' => 'sly', 'Solyc10g086565.2' => 'sly', 'Sopen01g037030' => 'spe', 'Sopen05g027920' => 'spe', 'Sopen05g034070' => 'spe', 'Sopen10g007260' => 'spe', 'Sopen10g034260' => 'spe', 'Sopen10g035950' => 'spe', 'Sp3g07710' => 'spa', 'Sp4g27420' => 'spa', 'Sp5g02450' => 'spa', 'Sp6g01280' => 'spa', 'Sp6g38480' => 'spa', 'Sp7g20780' => 'spa', 'TAR374G1413' => 'tar', 'TAR623G1777' => 'tar', 'TAR629G2370' => 'tar', 'TAR633G1759' => 'tar', 'TAR636G3387' => 'tar', 'THA.LOC104802447' => 'tha', 'THA.LOC104813916' => 'tha', 'THA.LOC104816423' => 'tha', 'THA.LOC104817246' => 'tha', 'THA.LOC104825895' => 'tha', 'Thecc.01G335200' => 'tca', 'Thecc.01G377400' => 'tca', 'Thecc.03G262200' => 'tca', 'Thecc.05G036800' => 'tca', 'Thecc.10G080500' => 'tca', 'Thecc.10G080800' => 'tca', 'Thhalv10001560m.g' => 'esa', 'Thhalv10006120m.g' => 'esa', 'Thhalv10014375m.g' => 'esa', 'Thhalv10021264m.g' => 'esa', 'Thhalv10028856m.g' => 'esa', 'TPR.G1914' => 'tpr', 'TPR.G4757' => 'tpr', 'TPR.G5595' => 'tpr', 'TWI14G0952' => 'twi', 'TWI14G1307' => 'twi', 'TWI38G2143' => 'twi', 'TWI59G0826' => 'twi', 'TWI77G0527' => 'twi', 'TWI81G0150' => 'twi', 'unitig_21.g21018' => 'ugi', 'unitig_26.g9725' => 'ugi', 'unitig_744.g24653' => 'ugi', 'unitig_749.g13778' => 'ugi', 'unitig_899.g15035' => 'ugi', 'vmacro04296' => 'vma', 'vmacro04852' => 'vma', 'vmacro13404' => 'vma', 'vmacro20169' => 'vma', 'vmacro21014' => 'vma', 'VMungo0331G0237' => 'vmu', 'VMungo0331G0706' => 'vmu', 'VMungo0331G1361' => 'vmu', 'VMungo0331G1489' => 'vmu', 'VMungo0540G1037' => 'vmu', 'VMungo0720G2487' => 'vmu', 'VMungo0720G2721' => 'vmu', 'Zm00001eb086860' => 'zma', 'Zm00001eb104760' => 'zma', 'Zm00001eb148220' => 'zma', 'Zm00001eb259030' => 'zma', 'Zm00001eb289590' => 'zma', 'Zm00001eb420150' => 'zma' ), 'gf_id' => 'HOM05D000968', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000968' ), 'data_identifier' => 'HOM05D000968', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000968', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p31690' => 'bna', 'A03p36040' => 'bna', 'A03p53730' => 'bna', 'A04p01410' => 'bna', 'A05p05420' => 'bna', 'A05p39630' => 'bna', 'A05p39640' => 'bna', 'A09p00970' => 'bna', 'A09p53060' => 'bna', 'A10p31890' => 'bna', 'Aa31LG10G15040' => 'aar', 'Aa31LG1G21090' => 'aar', 'Aa31LG1G26900' => 'aar', 'Aa31LG3G1820' => 'aar', 'Aa31LG5G1100' => 'aar', 'Aa31LG6G4740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2265' => 'aag', 'Actinidia07998' => 'ach', 'Actinidia11266' => 'ach', 'Actinidia12682' => 'ach', 'Actinidia26479' => 'ach', 'Actinidia31406' => 'ach', 'Actinidia32437' => 'ach', 'Actinidia38862' => 'ach', 'Ah.05g174230' => 'amhyb', 'Ah.05g179070' => 'amhyb', 'Ah.05g179090' => 'amhyb', 'Ah.12g059950' => 'amhyb', 'AL3G20480' => 'aly', 'AL4G44520' => 'aly', 'AL5G43110' => 'aly', 'AL6G13890' => 'aly', 'AL6G52620' => 'aly', 'AL7G30830' => 'aly', 'Aqoxy1G00899' => 'aox', 'Aqoxy5G04333' => 'aox', 'Aqoxy7G00641' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3IZ0NN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4EF6AW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W9P8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79GA3M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C43NQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFCU6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G95YVJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCHK29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LU1UG8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX91RN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGB4B1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8DA0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9H7JI' => 'arhy', 'AT3G09320' => 'ath', 'AT3G60800' => 'ath', 'AT4G00840' => 'ath', 'AT4G22750' => 'ath', 'AT5G04270' => 'ath', 'ATR0090G003' => 'atr', 'ATR0559G349' => 'atr', 'ATR0680G261' => 'atr', 'ATR0810G048' => 'atr', 'Atru.chr12.831' => 'acertr', 'Atru.chr5.303' => 'acertr', 'Atru.chr5.748' => 'acertr', 'Atru.chr8.1999' => 'acertr', 'Atru.chr9.1436' => 'acertr', 'AUR62004211' => 'cqu', 'AUR62004548' => 'cqu', 'AUR62013637' => 'cqu', 'AUR62022662' => 'cqu', 'AUR62025777' => 'cqu', 'AUR62042386' => 'cqu', 'BcaB01g02310' => 'bca', 'BcaB01g06062' => 'bca', 'BcaB02g08975' => 'bca', 'BcaB02g08980' => 'bca', 'BcaC01g04228' => 'bca', 'BcaC01g06830' => 'bca', 'BcaC02g10186' => 'bca', 'BcaC02g12214' => 'bca', 'BcaC04g24101' => 'bca', 'BcaC05g29520' => 'bca', 'BcaC05g29661' => 'bca', 'BcaC06g32130' => 'bca', 'BcaC06g32131' => 'bca', 'BcaC07g40601' => 'bca', 'BcaC07g42641' => 'bca', 'BcaNung01038' => 'bca', 'BcaNung01676' => 'bca', 'BcaNung02480' => 'bca', 'BcaNung07376' => 'bca', 'BolC3t16146H' => 'bol', 'BolC3t16637H' => 'bol', 'BolC4t22257H' => 'bol', 'BolC4t24728H' => 'bol', 'BolC5t34517H' => 'bol', 'BolC7t45703H' => 'bol', 'BolC8t51166H' => 'bol', 'BolC9t53038H' => 'bol', 'BolC9t60000H' => 'bol', 'BraA01t01345Z' => 'bra', 'BraA01t01346Z' => 'bra', 'BraA01t01348Z' => 'bra', 'BraA03t12347Z' => 'bra', 'BraA03t12775Z' => 'bra', 'BraA03t14439Z' => 'bra', 'BraA04t15860Z' => 'bra', 'BraA05t19511Z' => 'bra', 'BraA05t22746Z' => 'bra', 'BraA09t35767Z' => 'bra', 'BraA09t40732Z' => 'bra', 'BraA10t45233Z' => 'bra', 'C03p38720' => 'bna', 'C03p43680' => 'bna', 'C04p06350' => 'bna', 'C04p31800' => 'bna', 'C05p58680' => 'bna', 'C07p52110' => 'bna', 'C08p35760' => 'bna', 'C09p01050' => 'bna', 'C09p72600' => 'bna', 'CAN.G106.2' => 'can', 'CAN.G1482.1' => 'can', 'CAN.G324.12' => 'can', 'CAN.G388.20' => 'can', 'CAN.G412.7' => 'can', 'CAN.G694.32' => 'can', 'CAN.G92.12' => 'can', 'CANSAT11G2353' => 'cansat', 'CANSAT21G1398' => 'cansat', 'CANSAT56G2456' => 'cansat', 'CANSAT56G3031' => 'cansat', 'CANSAT56G4539' => 'cansat', 'CARHR083680' => 'chi', 'CARHR171190' => 'chi', 'CARHR209010' => 'chi', 'CARHR229680' => 'chi', 'CARHR249490' => 'chi', 'Carub.0003s0844' => 'cru', 'Carub.0005s2755' => 'cru', 'Carub.0006s0322' => 'cru', 'Carub.0006s3586' => 'cru', 'Carub.0007s1855' => 'cru', 'Ca_07808_v3' => 'car', 'Ca_09535_v3' => 'car', 'Ca_10548_v3' => 'car', 'Ca_19913_v3' => 'car', 'Ca_19916_v3' => 'car', 'Ca_19975_v3' => 'car', 'CBR_g22876' => 'cbr', 'CBR_g22879' => 'cbr', 'CBR_g38491' => 'cbr', 'CBR_g54185' => 'cbr', 'CBR_g54190' => 'cbr', 'Cc02_g11020' => 'ccan', 'Cc02_g23920' => 'ccan', 'Cc02_g39860' => 'ccan', 'Cc02_g39870' => 'ccan', 'Cc03_g06760' => 'ccan', 'Cc06_g02450' => 'ccan', 'Cc09_g09450' => 'ccan', 'CDE02G1959' => 'cde', 'CDE04G0600' => 'cde', 'CDE07G1996' => 'cde', 'CDE07G2078' => 'cde', 'CDE11G0611' => 'cde', 'Cfa001683' => 'cfa', 'Cfa001734' => 'cfa', 'Cfa001737' => 'cfa', 'Cfa003751' => 'cfa', 'Cfa012019' => 'cfa', 'Cfa017353' => 'cfa', 'Cfa017732' => 'cfa', 'Cfa022464' => 'cfa', 'Ciclev10012400m.g' => 'ccl', 'Ciclev10021242m.g' => 'ccl', 'Ciclev10021302m.g' => 'ccl', 'Ciclev10021463m.g' => 'ccl', 'Ciclev10032359m.g' => 'ccl', 'CiPaw.01G081000' => 'cil', 'CiPaw.01G262500' => 'cil', 'CiPaw.01G269800' => 'cil', 'CiPaw.02G168400' => 'cil', 'CiPaw.05G119500' => 'cil', 'CiPaw.11G147300' => 'cil', 'ClCG01G003630' => 'cla', 'ClCG05G000510' => 'cla', 'ClCG05G002300' => 'cla', 'ClCG08G007650' => 'cla', 'ClCG10G021250' => 'cla', 'COL.COLO4_06218' => 'col', 'COL.COLO4_12538' => 'col', 'COL.COLO4_14775' => 'col', 'COL.COLO4_23875' => 'col', 'Cpa.g.sc141.16' => 'cpa', 'Cpa.g.sc169.16' => 'cpa', 'Cpa.g.sc244.4' => 'cpa', 'Cpa.g.sc244.5' => 'cpa', 'Cpa.g.sc29.87' => 'cpa', 'Cpa.g.sc53.115' => 'cpa', 'Cre03.g207502' => 'cre', 'Cre06.g277000' => 'cre', 'Cre09.g394050' => 'cre', 'CsaV3_3G007680' => 'csa', 'CsaV3_3G009710' => 'csa', 'CsaV3_3G034790' => 'csa', 'CsaV3_5G003750' => 'csa', 'CsaV3_6G036620' => 'csa', 'CSS0002288' => 'camsi', 'CSS0011250' => 'camsi', 'CSS0021619' => 'camsi', 'CSS0046701' => 'camsi', 'DCAR_006420' => 'dca', 'DCAR_006865' => 'dca', 'DCAR_008558' => 'dca', 'DCAR_028754' => 'dca', 'DCAR_028755' => 'dca', 'Dinv31218' => 'din', 'Dinv32371' => 'din', 'Dinv34250' => 'din', 'Dinv37156' => 'din', 'Dinv43704' => 'din', 'Duzib093G1811' => 'dzi', 'Duzib106G1622' => 'dzi', 'Duzib114G0504' => 'dzi', 'Duzib128G0338' => 'dzi', 'Duzib128G1577' => 'dzi', 'Duzib133G0104' => 'dzi', 'Duzib133G1080' => 'dzi', 'Duzib138G0324' => 'dzi', 'Duzib138G0394' => 'dzi', 'Duzib205G0122' => 'dzi', 'Duzib268G1020' => 'dzi', 'Duzib268G1359' => 'dzi', 'ECA232G3929' => 'eca', 'ECA236G2210' => 'eca', 'ECA236G2287' => 'eca', 'ECA240G4568' => 'eca', 'ECA247G0894' => 'eca', 'EL10Ac1g00200' => 'bvu', 'EL10Ac1g00886' => 'bvu', 'EL10As1g23091' => 'bvu', 'EL10As1g23092' => 'bvu', 'Eucgr.A01284' => 'egr', 'Eucgr.A01285' => 'egr', 'Eucgr.D02456' => 'egr', 'Eucgr.E00018' => 'egr', 'Eucgr.E01439' => 'egr', 'Eucgr.G02859' => 'egr', 'FAN01G0168' => 'fan', 'FAN01G0453' => 'fan', 'FAN01G2761' => 'fan', 'FAN02G1239' => 'fan', 'FAN03G0645' => 'fan', 'FAN03G2707' => 'fan', 'FAN03G2978' => 'fan', 'FAN04G0227' => 'fan', 'FAN06G0091' => 'fan', 'FAN06G1418' => 'fan', 'FAN06G1512' => 'fan', 'FAN06G1986' => 'fan', 'FAN06G2905' => 'fan', 'FAN06G4325' => 'fan', 'FAN08G0033' => 'fan', 'FAN09G0642' => 'fan', 'FAN10G1763' => 'fan', 'FAN10G2026' => 'fan', 'FAN10G2513' => 'fan', 'FAN10G3402' => 'fan', 'FAN10G3564' => 'fan', 'FAN10G3987' => 'fan', 'FAN13G1490' => 'fan', 'FAN14G5857' => 'fan', 'FAN18G1188' => 'fan', 'FvH4_5g00750' => 'fve', 'FvH4_6g13410' => 'fve', 'FvH4_7g11740' => 'fve', 'FvH4_7g17410' => 'fve', 'FvH4_7g18860' => 'fve', 'Glyma.01G099100' => 'gma', 'Glyma.01G142300' => 'gma', 'Glyma.03G025500' => 'gma', 'Glyma.03G069700' => 'gma', 'Glyma.03G260000' => 'gma', 'Glyma.09G269800' => 'gma', 'Glyma.10G208700' => 'gma', 'Glyma.18G220400' => 'gma', 'Glyma.20G182000' => 'gma', 'Gohir.A01G221726' => 'ghi', 'Gohir.A07G134600' => 'ghi', 'Gohir.A07G146000' => 'ghi', 'Gohir.A08G173900' => 'ghi', 'Gohir.A09G194900' => 'ghi', 'Gohir.A10G204100' => 'ghi', 'Gohir.A11G080600' => 'ghi', 'Gohir.A11G327500' => 'ghi', 'Gohir.A12G101800' => 'ghi', 'Gohir.D01G211200' => 'ghi', 'Gohir.D07G139200' => 'ghi', 'Gohir.D07G152100' => 'ghi', 'Gohir.D08G192600' => 'ghi', 'Gohir.D09G189200' => 'ghi', 'Gohir.D10G212000' => 'ghi', 'Gohir.D11G085200' => 'ghi', 'Gohir.D11G346400' => 'ghi', 'Gohir.D12G104800' => 'ghi', 'Gorai.001G151300' => 'gra', 'Gorai.001G174100' => 'gra', 'Gorai.002G257000' => 'gra', 'Gorai.004G202600' => 'gra', 'Gorai.007G090900' => 'gra', 'Gorai.007G376700' => 'gra', 'Gorai.008G114100' => 'gra', 'Gorai.011G237900' => 'gra', 'GSVIVG01005450001' => 'vvi', 'GSVIVG01016232001' => 'vvi', 'GSVIVG01026157001' => 'vvi', 'GSVIVG01027419001' => 'vvi', 'GSVIVG01027631001' => 'vvi', 'GSVIVG01034143001' => 'vvi', 'HanXRQChr03g0093921' => 'han', 'HanXRQChr04g0120001' => 'han', 'HanXRQChr04g0122561' => 'han', 'HanXRQChr09g0246851' => 'han', 'HanXRQChr10g0293311' => 'han', 'HanXRQChr13g0425231' => 'han', 'HanXRQChr16g0532571' => 'han', 'Haze_09050' => 'cav', 'Haze_15715' => 'cav', 'Haze_15716' => 'cav', 'Haze_16803' => 'cav', 'Haze_16850' => 'cav', 'Hma1.2p1_0301F.1_g118655' => 'hma', 'Hma1.2p1_0309F.1_g120590' => 'hma', 'Hma1.2p1_0936F.1_g238900' => 'hma', 'Hma1.2p1_3552F.1_g336740' => 'hma', 'HPP92_003520' => 'vpl', 'HPP92_006628' => 'vpl', 'HPP92_006645' => 'vpl', 'HPP92_014669' => 'vpl', 'HPP92_015077' => 'vpl', 'Hund16742' => 'sun', 'Hund17022' => 'sun', 'Lalb_Chr02g0152131' => 'lal', 'Lalb_Chr05g0225371' => 'lal', 'Lalb_Chr07g0189841' => 'lal', 'Lalb_Chr07g0192961' => 'lal', 'Lalb_Chr12g0208221' => 'lal', 'Lalb_Chr13g0291211' => 'lal', 'Lalb_Chr13g0291781' => 'lal', 'Lalb_Chr18g0044651' => 'lal', 'Lalb_Chr21g0313731' => 'lal', 'Lj1g0022533' => 'lja', 'Lj2A18T50' => 'lonja', 'Lj2A92G93' => 'lonja', 'Lj3A965T73' => 'lonja', 'Lj3g0000673' => 'lja', 'Lj3g0002666' => 'lja', 'Lj4g0016985' => 'lja', 'Lj5g0003625' => 'lja', 'Lj7A529G36' => 'lonja', 'Lj9A569T49' => 'lonja', 'Lj9A604T63' => 'lonja', 'Lsat_1_v5_gn_3_132060' => 'lsa', 'Lsat_1_v5_gn_4_68941' => 'lsa', 'Lsat_1_v5_gn_5_95580' => 'lsa', 'Lsat_1_v5_gn_7_161' => 'lsa', 'Lsat_1_v5_gn_7_7041' => 'lsa', 'Lsat_1_v5_gn_9_33481' => 'lsa', 'Lsat_1_v5_gn_9_68260' => 'lsa', 'Manes.01G073100' => 'mes', 'Manes.01G266300' => 'mes', 'Manes.02G033300' => 'mes', 'Manes.05G017900' => 'mes', 'Manes.05G046100' => 'mes', 'Manes.08G080900' => 'mes', 'Manes.10G049400' => 'mes', 'Mapoly0009s0186' => 'mpo', 'Mapoly0036s0118' => 'mpo', 'Mapoly0101s0046' => 'mpo', 'MBI04_g30218_MAGBIO' => 'mbi', 'MBI04_g35564_MAGBIO' => 'mbi', 'MBI12_g34011_MAGBIO' => 'mbi', 'MBI14_g04655_MAGBIO' => 'mbi', 'MCO07G653' => 'mco', 'MCO10G173' => 'mco', 'MD01G1087100' => 'mdo', 'MD01G1104200' => 'mdo', 'MD02G1205100' => 'mdo', 'MD04G1079200' => 'mdo', 'MD04G1131400' => 'mdo', 'MD07G1121600' => 'mdo', 'MD07G1157300' => 'mdo', 'MD07G1171000' => 'mdo', 'MD12G1144500' => 'mdo', 'Medtr1g094610' => 'mtr', 'Medtr4g021795' => 'mtr', 'Medtr4g023760' => 'mtr', 'Medtr7g118050' => 'mtr', 'MELO3C005582.2' => 'cme', 'MELO3C005989.2' => 'cme', 'MELO3C006192.2' => 'cme', 'MELO3C009248.2' => 'cme', 'MELO3C019817.2' => 'cme', 'Migut.B01625' => 'egut', 'Migut.B01915' => 'egut', 'Migut.F01721' => 'egut', 'Migut.J00314' => 'egut', 'MSTRG.20742' => 'ama', 'MSTRG.8134' => 'ama', 'Nitab4.5_0000096g0010' => 'nta', 'Nitab4.5_0000202g0030' => 'nta', 'Nitab4.5_0000216g0370' => 'nta', 'Nitab4.5_0000457g0230' => 'nta', 'Nitab4.5_0001702g0170' => 'nta', 'Nitab4.5_0003607g0010' => 'nta', 'Nitab4.5_0004917g0020' => 'nta', 'Nitab4.5_0007059g0010' => 'nta', 'Nitab4.5_0007184g0010' => 'nta', 'Nitab4.5_0007346g0020' => 'nta', 'Nn1g00410' => 'nnu', 'Nn1g01252' => 'nnu', 'Nn2g11168' => 'nnu', 'Nn2g13403' => 'nnu', 'Nn2g13760' => 'nnu', 'Nn4g26380' => 'nnu', 'Oeu000806.2' => 'oeu', 'Oeu005788.1' => 'oeu', 'Oeu006900.3' => 'oeu', 'Oeu007797.1' => 'oeu', 'Oeu011932.1' => 'oeu', 'Oeu022739.1' => 'oeu', 'Oeu037918.1' => 'oeu', 'Oeu055490.2' => 'oeu', 'Os01g0844400' => 'osa', 'Os02g0819100' => 'osa', 'Os03g0804300' => 'osa', 'Os05g0458000' => 'osa', 'Os07g0467800' => 'osa', 'Os12g0602200' => 'osa', 'Peaxi162Scf00013g03444' => 'pax', 'Peaxi162Scf00094g01120' => 'pax', 'Peaxi162Scf00191g01211' => 'pax', 'Peaxi162Scf00238g01110' => 'pax', 'Peaxi162Scf00330g00719' => 'pax', 'Peaxi162Scf00627g00018' => 'pax', 'PGR031G2686' => 'pgr', 'PGR042G0809' => 'pgr', 'PGR142G0193' => 'pgr', 'PGSC0003DMG400011066' => 'stu', 'PGSC0003DMG400012041' => 'stu', 'PGSC0003DMG400013678' => 'stu', 'PGSC0003DMG400023477' => 'stu', 'PGSC0003DMG400025956' => 'stu', 'PGSC0003DMG401019151' => 'stu', 'Phvul.006G116400' => 'pvu', 'Phvul.007G097300' => 'pvu', 'Phvul.010G015000' => 'pvu', 'Phvul.010G083900' => 'pvu', 'Potri.001G117100' => 'ptr', 'Potri.002G147300' => 'ptr', 'Potri.003G115600' => 'ptr', 'Potri.006G087400' => 'ptr', 'Potri.010G226100' => 'ptr', 'Potri.014G069200' => 'ptr', 'Potri.014G104000' => 'ptr', 'Potri.016G100200' => 'ptr', 'Pp3c10_20450' => 'ppa', 'Pp3c1_42400' => 'ppa', 'Pp3c3_24390' => 'ppa', 'Pp3c3_2860' => 'ppa', 'PRCOL_00003193' => 'pco', 'Prupe.2G144500' => 'ppe', 'Prupe.2G195700' => 'ppe', 'Prupe.2G209800' => 'ppe', 'Prupe.5G080000' => 'ppe', 'Prupe.6G257900' => 'ppe', 'Psat3g001160' => 'psa', 'Psat6g181880' => 'psa', 'Psat7g233720' => 'psa', 'PSO063G7587' => 'pso', 'PSO339G2145' => 'pso', 'PSO339G3369' => 'pso', 'PSO478G2747' => 'pso', 'PSO513G0140' => 'pso', 'PSO782G1614' => 'pso', 'PSO782G4889' => 'pso', 'PSO782G5485' => 'pso', 'PSO801G0241' => 'pso', 'QL07p048854' => 'qlo', 'QL08p046745' => 'qlo', 'QL08p052606' => 'qlo', 'QL08p053414' => 'qlo', 'QL08p054868' => 'qlo', 'RcHm_v2.0_Chr1g0350251' => 'rch', 'RcHm_v2.0_Chr1g0360851' => 'rch', 'RcHm_v2.0_Chr1g0362791' => 'rch', 'RcHm_v2.0_Chr3g0466281' => 'rch', 'RcHm_v2.0_Chr7g0201481' => 'rch', 'Rhsim01G0148600' => 'rsi', 'Rhsim05G0194400' => 'rsi', 'Rhsim07G0000700' => 'rsi', 'Rhsim07G0000800' => 'rsi', 'Rhsim07G0027900' => 'rsi', 'Rhsim09G0149500' => 'rsi', 'RhsimUnG0186900' => 'rsi', 'Sabra01G0089900' => 'sbr', 'Sabra02G0114700' => 'sbr', 'Sabra02G0116300' => 'sbr', 'Sabra03G0080100' => 'sbr', 'Sabra08G0024300' => 'sbr', 'Sabra10G0174300' => 'sbr', 'Sabra14G0048900' => 'sbr', 'Sabra14G0076500' => 'sbr', 'SalBow5G2513' => 'sbo', 'Sc01g0002300' => 'sci', 'Sc01g0004450' => 'sci', 'Sc06g0001680' => 'sci', 'Sc23g0003580' => 'sci', 'Sed0000913' => 'sed', 'Sed0001655' => 'sed', 'Sed0007745' => 'sed', 'Sed0010951' => 'sed', 'Sed0017599' => 'sed', 'Sed0021405' => 'sed', 'Sed0022810' => 'sed', 'SEGI_07099' => 'sgi', 'SEGI_11931' => 'sgi', 'SEGI_13187' => 'sgi', 'SEGI_29958' => 'sgi', 'SEGI_36351' => 'sgi', 'SGA_v2.0_scaffold126G33770' => 'sas', 'SGA_v2.0_scaffold153G37003' => 'sas', 'SGA_v2.0_scaffold2G01359' => 'sas', 'SGA_v2.0_scaffold5G03064' => 'sas', 'SGA_v2.0_scaffold95G28903' => 'sas', 'SHI12701' => 'shi', 'SHI26410' => 'shi', 'SHI38997' => 'shi', 'SHI53759' => 'shi', 'SHI53886' => 'shi', 'SHI54714' => 'shi', 'SMO011G0041' => 'smo', 'SMO146G0251' => 'smo', 'SMO160G0004' => 'smo', 'SMO174G0057' => 'smo', 'SMO244G0089' => 'smo', 'SMO296G0011' => 'smo', 'Solyc01g091280.3' => 'sly', 'Solyc05g047610.3' => 'sly', 'Solyc05g047640.3' => 'sly', 'Solyc05g055630.3' => 'sly', 'Solyc10g018160.2' => 'sly', 'Solyc10g084820.2' => 'sly', 'Solyc10g086565.2' => 'sly', 'Sopen01g037030' => 'spe', 'Sopen05g027920' => 'spe', 'Sopen05g034070' => 'spe', 'Sopen10g007260' => 'spe', 'Sopen10g034260' => 'spe', 'Sopen10g035950' => 'spe', 'Sp3g07710' => 'spa', 'Sp4g27420' => 'spa', 'Sp5g02450' => 'spa', 'Sp6g01280' => 'spa', 'Sp6g38480' => 'spa', 'Sp7g20780' => 'spa', 'TAR374G1413' => 'tar', 'TAR623G1777' => 'tar', 'TAR629G2370' => 'tar', 'TAR633G1759' => 'tar', 'TAR636G3387' => 'tar', 'THA.LOC104802447' => 'tha', 'THA.LOC104813916' => 'tha', 'THA.LOC104816423' => 'tha', 'THA.LOC104817246' => 'tha', 'THA.LOC104825895' => 'tha', 'Thecc.01G335200' => 'tca', 'Thecc.01G377400' => 'tca', 'Thecc.03G262200' => 'tca', 'Thecc.05G036800' => 'tca', 'Thecc.10G080500' => 'tca', 'Thecc.10G080800' => 'tca', 'Thhalv10001560m.g' => 'esa', 'Thhalv10006120m.g' => 'esa', 'Thhalv10014375m.g' => 'esa', 'Thhalv10021264m.g' => 'esa', 'Thhalv10028856m.g' => 'esa', 'TPR.G1914' => 'tpr', 'TPR.G4757' => 'tpr', 'TPR.G5595' => 'tpr', 'TWI14G0952' => 'twi', 'TWI14G1307' => 'twi', 'TWI38G2143' => 'twi', 'TWI59G0826' => 'twi', 'TWI77G0527' => 'twi', 'TWI81G0150' => 'twi', 'unitig_21.g21018' => 'ugi', 'unitig_26.g9725' => 'ugi', 'unitig_744.g24653' => 'ugi', 'unitig_749.g13778' => 'ugi', 'unitig_899.g15035' => 'ugi', 'vmacro04296' => 'vma', 'vmacro04852' => 'vma', 'vmacro13404' => 'vma', 'vmacro20169' => 'vma', 'vmacro21014' => 'vma', 'VMungo0331G0237' => 'vmu', 'VMungo0331G0706' => 'vmu', 'VMungo0331G1361' => 'vmu', 'VMungo0331G1489' => 'vmu', 'VMungo0540G1037' => 'vmu', 'VMungo0720G2487' => 'vmu', 'VMungo0720G2721' => 'vmu', 'Zm00001eb086860' => 'zma', 'Zm00001eb104760' => 'zma', 'Zm00001eb148220' => 'zma', 'Zm00001eb259030' => 'zma', 'Zm00001eb289590' => 'zma', 'Zm00001eb420150' => 'zma' ) $gf_id = 'HOM05D000968' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000968' ) $data_identifier = 'HOM05D000968' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 19, 'bol' => (int) 9, 'bra' => (int) 12, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 5, 'ccan' => (int) 7, 'cde' => (int) 5, 'cfa' => (int) 8, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 4, 'dca' => (int) 5, 'din' => (int) 5, 'dzi' => (int) 12, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 25, 'fve' => (int) 5, 'gma' => (int) 9, 'ghi' => (int) 18, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 7, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 5, 'sun' => (int) 2, 'lal' => (int) 9, 'lja' => (int) 5, 'lonja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 9, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 2, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 3, 'stu' => (int) 6, 'pvu' => (int) 4, 'ptr' => (int) 8, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 3, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 1, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 5, 'sas' => (int) 5, 'shi' => (int) 6, 'smo' => (int) 6, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 3, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420150' $species_info = array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ) $local_species = 'fve' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000968', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p31690' => 'bna', 'A03p36040' => 'bna', 'A03p53730' => 'bna', 'A04p01410' => 'bna', 'A05p05420' => 'bna', 'A05p39630' => 'bna', 'A05p39640' => 'bna', 'A09p00970' => 'bna', 'A09p53060' => 'bna', 'A10p31890' => 'bna', 'Aa31LG10G15040' => 'aar', 'Aa31LG1G21090' => 'aar', 'Aa31LG1G26900' => 'aar', 'Aa31LG3G1820' => 'aar', 'Aa31LG5G1100' => 'aar', 'Aa31LG6G4740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2265' => 'aag', 'Actinidia07998' => 'ach', 'Actinidia11266' => 'ach', 'Actinidia12682' => 'ach', 'Actinidia26479' => 'ach', 'Actinidia31406' => 'ach', 'Actinidia32437' => 'ach', 'Actinidia38862' => 'ach', 'Ah.05g174230' => 'amhyb', 'Ah.05g179070' => 'amhyb', 'Ah.05g179090' => 'amhyb', 'Ah.12g059950' => 'amhyb', 'AL3G20480' => 'aly', 'AL4G44520' => 'aly', 'AL5G43110' => 'aly', 'AL6G13890' => 'aly', 'AL6G52620' => 'aly', 'AL7G30830' => 'aly', 'Aqoxy1G00899' => 'aox', 'Aqoxy5G04333' => 'aox', 'Aqoxy7G00641' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3IZ0NN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4EF6AW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W9P8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79GA3M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C43NQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFCU6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G95YVJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCHK29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LU1UG8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX91RN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGB4B1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8DA0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9H7JI' => 'arhy', 'AT3G09320' => 'ath', 'AT3G60800' => 'ath', 'AT4G00840' => 'ath', 'AT4G22750' => 'ath', 'AT5G04270' => 'ath', 'ATR0090G003' => 'atr', 'ATR0559G349' => 'atr', 'ATR0680G261' => 'atr', 'ATR0810G048' => 'atr', 'Atru.chr12.831' => 'acertr', 'Atru.chr5.303' => 'acertr', 'Atru.chr5.748' => 'acertr', 'Atru.chr8.1999' => 'acertr', 'Atru.chr9.1436' => 'acertr', 'AUR62004211' => 'cqu', 'AUR62004548' => 'cqu', 'AUR62013637' => 'cqu', 'AUR62022662' => 'cqu', 'AUR62025777' => 'cqu', 'AUR62042386' => 'cqu', 'BcaB01g02310' => 'bca', 'BcaB01g06062' => 'bca', 'BcaB02g08975' => 'bca', 'BcaB02g08980' => 'bca', 'BcaC01g04228' => 'bca', 'BcaC01g06830' => 'bca', 'BcaC02g10186' => 'bca', 'BcaC02g12214' => 'bca', 'BcaC04g24101' => 'bca', 'BcaC05g29520' => 'bca', 'BcaC05g29661' => 'bca', 'BcaC06g32130' => 'bca', 'BcaC06g32131' => 'bca', 'BcaC07g40601' => 'bca', 'BcaC07g42641' => 'bca', 'BcaNung01038' => 'bca', 'BcaNung01676' => 'bca', 'BcaNung02480' => 'bca', 'BcaNung07376' => 'bca', 'BolC3t16146H' => 'bol', 'BolC3t16637H' => 'bol', 'BolC4t22257H' => 'bol', 'BolC4t24728H' => 'bol', 'BolC5t34517H' => 'bol', 'BolC7t45703H' => 'bol', 'BolC8t51166H' => 'bol', 'BolC9t53038H' => 'bol', 'BolC9t60000H' => 'bol', 'BraA01t01345Z' => 'bra', 'BraA01t01346Z' => 'bra', 'BraA01t01348Z' => 'bra', 'BraA03t12347Z' => 'bra', 'BraA03t12775Z' => 'bra', 'BraA03t14439Z' => 'bra', 'BraA04t15860Z' => 'bra', 'BraA05t19511Z' => 'bra', 'BraA05t22746Z' => 'bra', 'BraA09t35767Z' => 'bra', 'BraA09t40732Z' => 'bra', 'BraA10t45233Z' => 'bra', 'C03p38720' => 'bna', 'C03p43680' => 'bna', 'C04p06350' => 'bna', 'C04p31800' => 'bna', 'C05p58680' => 'bna', 'C07p52110' => 'bna', 'C08p35760' => 'bna', 'C09p01050' => 'bna', 'C09p72600' => 'bna', 'CAN.G106.2' => 'can', 'CAN.G1482.1' => 'can', 'CAN.G324.12' => 'can', 'CAN.G388.20' => 'can', 'CAN.G412.7' => 'can', 'CAN.G694.32' => 'can', 'CAN.G92.12' => 'can', 'CANSAT11G2353' => 'cansat', 'CANSAT21G1398' => 'cansat', 'CANSAT56G2456' => 'cansat', 'CANSAT56G3031' => 'cansat', 'CANSAT56G4539' => 'cansat', 'CARHR083680' => 'chi', 'CARHR171190' => 'chi', 'CARHR209010' => 'chi', 'CARHR229680' => 'chi', 'CARHR249490' => 'chi', 'Carub.0003s0844' => 'cru', 'Carub.0005s2755' => 'cru', 'Carub.0006s0322' => 'cru', 'Carub.0006s3586' => 'cru', 'Carub.0007s1855' => 'cru', 'Ca_07808_v3' => 'car', 'Ca_09535_v3' => 'car', 'Ca_10548_v3' => 'car', 'Ca_19913_v3' => 'car', 'Ca_19916_v3' => 'car', 'Ca_19975_v3' => 'car', 'CBR_g22876' => 'cbr', 'CBR_g22879' => 'cbr', 'CBR_g38491' => 'cbr', 'CBR_g54185' => 'cbr', 'CBR_g54190' => 'cbr', 'Cc02_g11020' => 'ccan', 'Cc02_g23920' => 'ccan', 'Cc02_g39860' => 'ccan', 'Cc02_g39870' => 'ccan', 'Cc03_g06760' => 'ccan', 'Cc06_g02450' => 'ccan', 'Cc09_g09450' => 'ccan', 'CDE02G1959' => 'cde', 'CDE04G0600' => 'cde', 'CDE07G1996' => 'cde', 'CDE07G2078' => 'cde', 'CDE11G0611' => 'cde', 'Cfa001683' => 'cfa', 'Cfa001734' => 'cfa', 'Cfa001737' => 'cfa', 'Cfa003751' => 'cfa', 'Cfa012019' => 'cfa', 'Cfa017353' => 'cfa', 'Cfa017732' => 'cfa', 'Cfa022464' => 'cfa', 'Ciclev10012400m.g' => 'ccl', 'Ciclev10021242m.g' => 'ccl', 'Ciclev10021302m.g' => 'ccl', 'Ciclev10021463m.g' => 'ccl', 'Ciclev10032359m.g' => 'ccl', 'CiPaw.01G081000' => 'cil', 'CiPaw.01G262500' => 'cil', 'CiPaw.01G269800' => 'cil', 'CiPaw.02G168400' => 'cil', 'CiPaw.05G119500' => 'cil', 'CiPaw.11G147300' => 'cil', 'ClCG01G003630' => 'cla', 'ClCG05G000510' => 'cla', 'ClCG05G002300' => 'cla', 'ClCG08G007650' => 'cla', 'ClCG10G021250' => 'cla', 'COL.COLO4_06218' => 'col', 'COL.COLO4_12538' => 'col', 'COL.COLO4_14775' => 'col', 'COL.COLO4_23875' => 'col', 'Cpa.g.sc141.16' => 'cpa', 'Cpa.g.sc169.16' => 'cpa', 'Cpa.g.sc244.4' => 'cpa', 'Cpa.g.sc244.5' => 'cpa', 'Cpa.g.sc29.87' => 'cpa', 'Cpa.g.sc53.115' => 'cpa', 'Cre03.g207502' => 'cre', 'Cre06.g277000' => 'cre', 'Cre09.g394050' => 'cre', 'CsaV3_3G007680' => 'csa', 'CsaV3_3G009710' => 'csa', 'CsaV3_3G034790' => 'csa', 'CsaV3_5G003750' => 'csa', 'CsaV3_6G036620' => 'csa', 'CSS0002288' => 'camsi', 'CSS0011250' => 'camsi', 'CSS0021619' => 'camsi', 'CSS0046701' => 'camsi', 'DCAR_006420' => 'dca', 'DCAR_006865' => 'dca', 'DCAR_008558' => 'dca', 'DCAR_028754' => 'dca', 'DCAR_028755' => 'dca', 'Dinv31218' => 'din', 'Dinv32371' => 'din', 'Dinv34250' => 'din', 'Dinv37156' => 'din', 'Dinv43704' => 'din', 'Duzib093G1811' => 'dzi', 'Duzib106G1622' => 'dzi', 'Duzib114G0504' => 'dzi', 'Duzib128G0338' => 'dzi', 'Duzib128G1577' => 'dzi', 'Duzib133G0104' => 'dzi', 'Duzib133G1080' => 'dzi', 'Duzib138G0324' => 'dzi', 'Duzib138G0394' => 'dzi', 'Duzib205G0122' => 'dzi', 'Duzib268G1020' => 'dzi', 'Duzib268G1359' => 'dzi', 'ECA232G3929' => 'eca', 'ECA236G2210' => 'eca', 'ECA236G2287' => 'eca', 'ECA240G4568' => 'eca', 'ECA247G0894' => 'eca', 'EL10Ac1g00200' => 'bvu', 'EL10Ac1g00886' => 'bvu', 'EL10As1g23091' => 'bvu', 'EL10As1g23092' => 'bvu', 'Eucgr.A01284' => 'egr', 'Eucgr.A01285' => 'egr', 'Eucgr.D02456' => 'egr', 'Eucgr.E00018' => 'egr', 'Eucgr.E01439' => 'egr', 'Eucgr.G02859' => 'egr', 'FAN01G0168' => 'fan', 'FAN01G0453' => 'fan', 'FAN01G2761' => 'fan', 'FAN02G1239' => 'fan', 'FAN03G0645' => 'fan', 'FAN03G2707' => 'fan', 'FAN03G2978' => 'fan', 'FAN04G0227' => 'fan', 'FAN06G0091' => 'fan', 'FAN06G1418' => 'fan', 'FAN06G1512' => 'fan', 'FAN06G1986' => 'fan', 'FAN06G2905' => 'fan', 'FAN06G4325' => 'fan', 'FAN08G0033' => 'fan', 'FAN09G0642' => 'fan', 'FAN10G1763' => 'fan', 'FAN10G2026' => 'fan', 'FAN10G2513' => 'fan', 'FAN10G3402' => 'fan', 'FAN10G3564' => 'fan', 'FAN10G3987' => 'fan', 'FAN13G1490' => 'fan', 'FAN14G5857' => 'fan', 'FAN18G1188' => 'fan', 'FvH4_5g00750' => 'fve', 'FvH4_6g13410' => 'fve', 'FvH4_7g11740' => 'fve', 'FvH4_7g17410' => 'fve', 'FvH4_7g18860' => 'fve', 'Glyma.01G099100' => 'gma', 'Glyma.01G142300' => 'gma', 'Glyma.03G025500' => 'gma', 'Glyma.03G069700' => 'gma', 'Glyma.03G260000' => 'gma', 'Glyma.09G269800' => 'gma', 'Glyma.10G208700' => 'gma', 'Glyma.18G220400' => 'gma', 'Glyma.20G182000' => 'gma', 'Gohir.A01G221726' => 'ghi', 'Gohir.A07G134600' => 'ghi', 'Gohir.A07G146000' => 'ghi', 'Gohir.A08G173900' => 'ghi', 'Gohir.A09G194900' => 'ghi', 'Gohir.A10G204100' => 'ghi', 'Gohir.A11G080600' => 'ghi', 'Gohir.A11G327500' => 'ghi', 'Gohir.A12G101800' => 'ghi', 'Gohir.D01G211200' => 'ghi', 'Gohir.D07G139200' => 'ghi', 'Gohir.D07G152100' => 'ghi', 'Gohir.D08G192600' => 'ghi', 'Gohir.D09G189200' => 'ghi', 'Gohir.D10G212000' => 'ghi', 'Gohir.D11G085200' => 'ghi', 'Gohir.D11G346400' => 'ghi', 'Gohir.D12G104800' => 'ghi', 'Gorai.001G151300' => 'gra', 'Gorai.001G174100' => 'gra', 'Gorai.002G257000' => 'gra', 'Gorai.004G202600' => 'gra', 'Gorai.007G090900' => 'gra', 'Gorai.007G376700' => 'gra', 'Gorai.008G114100' => 'gra', 'Gorai.011G237900' => 'gra', 'GSVIVG01005450001' => 'vvi', 'GSVIVG01016232001' => 'vvi', 'GSVIVG01026157001' => 'vvi', 'GSVIVG01027419001' => 'vvi', 'GSVIVG01027631001' => 'vvi', 'GSVIVG01034143001' => 'vvi', 'HanXRQChr03g0093921' => 'han', 'HanXRQChr04g0120001' => 'han', 'HanXRQChr04g0122561' => 'han', 'HanXRQChr09g0246851' => 'han', 'HanXRQChr10g0293311' => 'han', 'HanXRQChr13g0425231' => 'han', 'HanXRQChr16g0532571' => 'han', 'Haze_09050' => 'cav', 'Haze_15715' => 'cav', 'Haze_15716' => 'cav', 'Haze_16803' => 'cav', 'Haze_16850' => 'cav', 'Hma1.2p1_0301F.1_g118655' => 'hma', 'Hma1.2p1_0309F.1_g120590' => 'hma', 'Hma1.2p1_0936F.1_g238900' => 'hma', 'Hma1.2p1_3552F.1_g336740' => 'hma', 'HPP92_003520' => 'vpl', 'HPP92_006628' => 'vpl', 'HPP92_006645' => 'vpl', 'HPP92_014669' => 'vpl', 'HPP92_015077' => 'vpl', 'Hund16742' => 'sun', 'Hund17022' => 'sun', 'Lalb_Chr02g0152131' => 'lal', 'Lalb_Chr05g0225371' => 'lal', 'Lalb_Chr07g0189841' => 'lal', 'Lalb_Chr07g0192961' => 'lal', 'Lalb_Chr12g0208221' => 'lal', 'Lalb_Chr13g0291211' => 'lal', 'Lalb_Chr13g0291781' => 'lal', 'Lalb_Chr18g0044651' => 'lal', 'Lalb_Chr21g0313731' => 'lal', 'Lj1g0022533' => 'lja', 'Lj2A18T50' => 'lonja', 'Lj2A92G93' => 'lonja', 'Lj3A965T73' => 'lonja', 'Lj3g0000673' => 'lja', 'Lj3g0002666' => 'lja', 'Lj4g0016985' => 'lja', 'Lj5g0003625' => 'lja', 'Lj7A529G36' => 'lonja', 'Lj9A569T49' => 'lonja', 'Lj9A604T63' => 'lonja', 'Lsat_1_v5_gn_3_132060' => 'lsa', 'Lsat_1_v5_gn_4_68941' => 'lsa', 'Lsat_1_v5_gn_5_95580' => 'lsa', 'Lsat_1_v5_gn_7_161' => 'lsa', 'Lsat_1_v5_gn_7_7041' => 'lsa', 'Lsat_1_v5_gn_9_33481' => 'lsa', 'Lsat_1_v5_gn_9_68260' => 'lsa', 'Manes.01G073100' => 'mes', 'Manes.01G266300' => 'mes', 'Manes.02G033300' => 'mes', 'Manes.05G017900' => 'mes', 'Manes.05G046100' => 'mes', 'Manes.08G080900' => 'mes', 'Manes.10G049400' => 'mes', 'Mapoly0009s0186' => 'mpo', 'Mapoly0036s0118' => 'mpo', 'Mapoly0101s0046' => 'mpo', 'MBI04_g30218_MAGBIO' => 'mbi', 'MBI04_g35564_MAGBIO' => 'mbi', 'MBI12_g34011_MAGBIO' => 'mbi', 'MBI14_g04655_MAGBIO' => 'mbi', 'MCO07G653' => 'mco', 'MCO10G173' => 'mco', 'MD01G1087100' => 'mdo', 'MD01G1104200' => 'mdo', 'MD02G1205100' => 'mdo', 'MD04G1079200' => 'mdo', 'MD04G1131400' => 'mdo', 'MD07G1121600' => 'mdo', 'MD07G1157300' => 'mdo', 'MD07G1171000' => 'mdo', 'MD12G1144500' => 'mdo', 'Medtr1g094610' => 'mtr', 'Medtr4g021795' => 'mtr', 'Medtr4g023760' => 'mtr', 'Medtr7g118050' => 'mtr', 'MELO3C005582.2' => 'cme', 'MELO3C005989.2' => 'cme', 'MELO3C006192.2' => 'cme', 'MELO3C009248.2' => 'cme', 'MELO3C019817.2' => 'cme', 'Migut.B01625' => 'egut', 'Migut.B01915' => 'egut', 'Migut.F01721' => 'egut', 'Migut.J00314' => 'egut', 'MSTRG.20742' => 'ama', 'MSTRG.8134' => 'ama', 'Nitab4.5_0000096g0010' => 'nta', 'Nitab4.5_0000202g0030' => 'nta', 'Nitab4.5_0000216g0370' => 'nta', 'Nitab4.5_0000457g0230' => 'nta', 'Nitab4.5_0001702g0170' => 'nta', 'Nitab4.5_0003607g0010' => 'nta', 'Nitab4.5_0004917g0020' => 'nta', 'Nitab4.5_0007059g0010' => 'nta', 'Nitab4.5_0007184g0010' => 'nta', 'Nitab4.5_0007346g0020' => 'nta', 'Nn1g00410' => 'nnu', 'Nn1g01252' => 'nnu', 'Nn2g11168' => 'nnu', 'Nn2g13403' => 'nnu', 'Nn2g13760' => 'nnu', 'Nn4g26380' => 'nnu', 'Oeu000806.2' => 'oeu', 'Oeu005788.1' => 'oeu', 'Oeu006900.3' => 'oeu', 'Oeu007797.1' => 'oeu', 'Oeu011932.1' => 'oeu', 'Oeu022739.1' => 'oeu', 'Oeu037918.1' => 'oeu', 'Oeu055490.2' => 'oeu', 'Os01g0844400' => 'osa', 'Os02g0819100' => 'osa', 'Os03g0804300' => 'osa', 'Os05g0458000' => 'osa', 'Os07g0467800' => 'osa', 'Os12g0602200' => 'osa', 'Peaxi162Scf00013g03444' => 'pax', 'Peaxi162Scf00094g01120' => 'pax', 'Peaxi162Scf00191g01211' => 'pax', 'Peaxi162Scf00238g01110' => 'pax', 'Peaxi162Scf00330g00719' => 'pax', 'Peaxi162Scf00627g00018' => 'pax', 'PGR031G2686' => 'pgr', 'PGR042G0809' => 'pgr', 'PGR142G0193' => 'pgr', 'PGSC0003DMG400011066' => 'stu', 'PGSC0003DMG400012041' => 'stu', 'PGSC0003DMG400013678' => 'stu', 'PGSC0003DMG400023477' => 'stu', 'PGSC0003DMG400025956' => 'stu', 'PGSC0003DMG401019151' => 'stu', 'Phvul.006G116400' => 'pvu', 'Phvul.007G097300' => 'pvu', 'Phvul.010G015000' => 'pvu', 'Phvul.010G083900' => 'pvu', 'Potri.001G117100' => 'ptr', 'Potri.002G147300' => 'ptr', 'Potri.003G115600' => 'ptr', 'Potri.006G087400' => 'ptr', 'Potri.010G226100' => 'ptr', 'Potri.014G069200' => 'ptr', 'Potri.014G104000' => 'ptr', 'Potri.016G100200' => 'ptr', 'Pp3c10_20450' => 'ppa', 'Pp3c1_42400' => 'ppa', 'Pp3c3_24390' => 'ppa', 'Pp3c3_2860' => 'ppa', 'PRCOL_00003193' => 'pco', 'Prupe.2G144500' => 'ppe', 'Prupe.2G195700' => 'ppe', 'Prupe.2G209800' => 'ppe', 'Prupe.5G080000' => 'ppe', 'Prupe.6G257900' => 'ppe', 'Psat3g001160' => 'psa', 'Psat6g181880' => 'psa', 'Psat7g233720' => 'psa', 'PSO063G7587' => 'pso', 'PSO339G2145' => 'pso', 'PSO339G3369' => 'pso', 'PSO478G2747' => 'pso', 'PSO513G0140' => 'pso', 'PSO782G1614' => 'pso', 'PSO782G4889' => 'pso', 'PSO782G5485' => 'pso', 'PSO801G0241' => 'pso', 'QL07p048854' => 'qlo', 'QL08p046745' => 'qlo', 'QL08p052606' => 'qlo', 'QL08p053414' => 'qlo', 'QL08p054868' => 'qlo', 'RcHm_v2.0_Chr1g0350251' => 'rch', 'RcHm_v2.0_Chr1g0360851' => 'rch', 'RcHm_v2.0_Chr1g0362791' => 'rch', 'RcHm_v2.0_Chr3g0466281' => 'rch', 'RcHm_v2.0_Chr7g0201481' => 'rch', 'Rhsim01G0148600' => 'rsi', 'Rhsim05G0194400' => 'rsi', 'Rhsim07G0000700' => 'rsi', 'Rhsim07G0000800' => 'rsi', 'Rhsim07G0027900' => 'rsi', 'Rhsim09G0149500' => 'rsi', 'RhsimUnG0186900' => 'rsi', 'Sabra01G0089900' => 'sbr', 'Sabra02G0114700' => 'sbr', 'Sabra02G0116300' => 'sbr', 'Sabra03G0080100' => 'sbr', 'Sabra08G0024300' => 'sbr', 'Sabra10G0174300' => 'sbr', 'Sabra14G0048900' => 'sbr', 'Sabra14G0076500' => 'sbr', 'SalBow5G2513' => 'sbo', 'Sc01g0002300' => 'sci', 'Sc01g0004450' => 'sci', 'Sc06g0001680' => 'sci', 'Sc23g0003580' => 'sci', 'Sed0000913' => 'sed', 'Sed0001655' => 'sed', 'Sed0007745' => 'sed', 'Sed0010951' => 'sed', 'Sed0017599' => 'sed', 'Sed0021405' => 'sed', 'Sed0022810' => 'sed', 'SEGI_07099' => 'sgi', 'SEGI_11931' => 'sgi', 'SEGI_13187' => 'sgi', 'SEGI_29958' => 'sgi', 'SEGI_36351' => 'sgi', 'SGA_v2.0_scaffold126G33770' => 'sas', 'SGA_v2.0_scaffold153G37003' => 'sas', 'SGA_v2.0_scaffold2G01359' => 'sas', 'SGA_v2.0_scaffold5G03064' => 'sas', 'SGA_v2.0_scaffold95G28903' => 'sas', 'SHI12701' => 'shi', 'SHI26410' => 'shi', 'SHI38997' => 'shi', 'SHI53759' => 'shi', 'SHI53886' => 'shi', 'SHI54714' => 'shi', 'SMO011G0041' => 'smo', 'SMO146G0251' => 'smo', 'SMO160G0004' => 'smo', 'SMO174G0057' => 'smo', 'SMO244G0089' => 'smo', 'SMO296G0011' => 'smo', 'Solyc01g091280.3' => 'sly', 'Solyc05g047610.3' => 'sly', 'Solyc05g047640.3' => 'sly', 'Solyc05g055630.3' => 'sly', 'Solyc10g018160.2' => 'sly', 'Solyc10g084820.2' => 'sly', 'Solyc10g086565.2' => 'sly', 'Sopen01g037030' => 'spe', 'Sopen05g027920' => 'spe', 'Sopen05g034070' => 'spe', 'Sopen10g007260' => 'spe', 'Sopen10g034260' => 'spe', 'Sopen10g035950' => 'spe', 'Sp3g07710' => 'spa', 'Sp4g27420' => 'spa', 'Sp5g02450' => 'spa', 'Sp6g01280' => 'spa', 'Sp6g38480' => 'spa', 'Sp7g20780' => 'spa', 'TAR374G1413' => 'tar', 'TAR623G1777' => 'tar', 'TAR629G2370' => 'tar', 'TAR633G1759' => 'tar', 'TAR636G3387' => 'tar', 'THA.LOC104802447' => 'tha', 'THA.LOC104813916' => 'tha', 'THA.LOC104816423' => 'tha', 'THA.LOC104817246' => 'tha', 'THA.LOC104825895' => 'tha', 'Thecc.01G335200' => 'tca', 'Thecc.01G377400' => 'tca', 'Thecc.03G262200' => 'tca', 'Thecc.05G036800' => 'tca', 'Thecc.10G080500' => 'tca', 'Thecc.10G080800' => 'tca', 'Thhalv10001560m.g' => 'esa', 'Thhalv10006120m.g' => 'esa', 'Thhalv10014375m.g' => 'esa', 'Thhalv10021264m.g' => 'esa', 'Thhalv10028856m.g' => 'esa', 'TPR.G1914' => 'tpr', 'TPR.G4757' => 'tpr', 'TPR.G5595' => 'tpr', 'TWI14G0952' => 'twi', 'TWI14G1307' => 'twi', 'TWI38G2143' => 'twi', 'TWI59G0826' => 'twi', 'TWI77G0527' => 'twi', 'TWI81G0150' => 'twi', 'unitig_21.g21018' => 'ugi', 'unitig_26.g9725' => 'ugi', 'unitig_744.g24653' => 'ugi', 'unitig_749.g13778' => 'ugi', 'unitig_899.g15035' => 'ugi', 'vmacro04296' => 'vma', 'vmacro04852' => 'vma', 'vmacro13404' => 'vma', 'vmacro20169' => 'vma', 'vmacro21014' => 'vma', 'VMungo0331G0237' => 'vmu', 'VMungo0331G0706' => 'vmu', 'VMungo0331G1361' => 'vmu', 'VMungo0331G1489' => 'vmu', 'VMungo0540G1037' => 'vmu', 'VMungo0720G2487' => 'vmu', 'VMungo0720G2721' => 'vmu', 'Zm00001eb086860' => 'zma', 'Zm00001eb104760' => 'zma', 'Zm00001eb148220' => 'zma', 'Zm00001eb259030' => 'zma', 'Zm00001eb289590' => 'zma', 'Zm00001eb420150' => 'zma' ), 'gf_id' => 'HOM05D000968', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000968' ), 'data_identifier' => 'HOM05D000968', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000968', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p31690' => 'bna', 'A03p36040' => 'bna', 'A03p53730' => 'bna', 'A04p01410' => 'bna', 'A05p05420' => 'bna', 'A05p39630' => 'bna', 'A05p39640' => 'bna', 'A09p00970' => 'bna', 'A09p53060' => 'bna', 'A10p31890' => 'bna', 'Aa31LG10G15040' => 'aar', 'Aa31LG1G21090' => 'aar', 'Aa31LG1G26900' => 'aar', 'Aa31LG3G1820' => 'aar', 'Aa31LG5G1100' => 'aar', 'Aa31LG6G4740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2265' => 'aag', 'Actinidia07998' => 'ach', 'Actinidia11266' => 'ach', 'Actinidia12682' => 'ach', 'Actinidia26479' => 'ach', 'Actinidia31406' => 'ach', 'Actinidia32437' => 'ach', 'Actinidia38862' => 'ach', 'Ah.05g174230' => 'amhyb', 'Ah.05g179070' => 'amhyb', 'Ah.05g179090' => 'amhyb', 'Ah.12g059950' => 'amhyb', 'AL3G20480' => 'aly', 'AL4G44520' => 'aly', 'AL5G43110' => 'aly', 'AL6G13890' => 'aly', 'AL6G52620' => 'aly', 'AL7G30830' => 'aly', 'Aqoxy1G00899' => 'aox', 'Aqoxy5G04333' => 'aox', 'Aqoxy7G00641' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3IZ0NN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4EF6AW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W9P8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79GA3M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C43NQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFCU6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G95YVJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCHK29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LU1UG8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX91RN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGB4B1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8DA0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9H7JI' => 'arhy', 'AT3G09320' => 'ath', 'AT3G60800' => 'ath', 'AT4G00840' => 'ath', 'AT4G22750' => 'ath', 'AT5G04270' => 'ath', 'ATR0090G003' => 'atr', 'ATR0559G349' => 'atr', 'ATR0680G261' => 'atr', 'ATR0810G048' => 'atr', 'Atru.chr12.831' => 'acertr', 'Atru.chr5.303' => 'acertr', 'Atru.chr5.748' => 'acertr', 'Atru.chr8.1999' => 'acertr', 'Atru.chr9.1436' => 'acertr', 'AUR62004211' => 'cqu', 'AUR62004548' => 'cqu', 'AUR62013637' => 'cqu', 'AUR62022662' => 'cqu', 'AUR62025777' => 'cqu', 'AUR62042386' => 'cqu', 'BcaB01g02310' => 'bca', 'BcaB01g06062' => 'bca', 'BcaB02g08975' => 'bca', 'BcaB02g08980' => 'bca', 'BcaC01g04228' => 'bca', 'BcaC01g06830' => 'bca', 'BcaC02g10186' => 'bca', 'BcaC02g12214' => 'bca', 'BcaC04g24101' => 'bca', 'BcaC05g29520' => 'bca', 'BcaC05g29661' => 'bca', 'BcaC06g32130' => 'bca', 'BcaC06g32131' => 'bca', 'BcaC07g40601' => 'bca', 'BcaC07g42641' => 'bca', 'BcaNung01038' => 'bca', 'BcaNung01676' => 'bca', 'BcaNung02480' => 'bca', 'BcaNung07376' => 'bca', 'BolC3t16146H' => 'bol', 'BolC3t16637H' => 'bol', 'BolC4t22257H' => 'bol', 'BolC4t24728H' => 'bol', 'BolC5t34517H' => 'bol', 'BolC7t45703H' => 'bol', 'BolC8t51166H' => 'bol', 'BolC9t53038H' => 'bol', 'BolC9t60000H' => 'bol', 'BraA01t01345Z' => 'bra', 'BraA01t01346Z' => 'bra', 'BraA01t01348Z' => 'bra', 'BraA03t12347Z' => 'bra', 'BraA03t12775Z' => 'bra', 'BraA03t14439Z' => 'bra', 'BraA04t15860Z' => 'bra', 'BraA05t19511Z' => 'bra', 'BraA05t22746Z' => 'bra', 'BraA09t35767Z' => 'bra', 'BraA09t40732Z' => 'bra', 'BraA10t45233Z' => 'bra', 'C03p38720' => 'bna', 'C03p43680' => 'bna', 'C04p06350' => 'bna', 'C04p31800' => 'bna', 'C05p58680' => 'bna', 'C07p52110' => 'bna', 'C08p35760' => 'bna', 'C09p01050' => 'bna', 'C09p72600' => 'bna', 'CAN.G106.2' => 'can', 'CAN.G1482.1' => 'can', 'CAN.G324.12' => 'can', 'CAN.G388.20' => 'can', 'CAN.G412.7' => 'can', 'CAN.G694.32' => 'can', 'CAN.G92.12' => 'can', 'CANSAT11G2353' => 'cansat', 'CANSAT21G1398' => 'cansat', 'CANSAT56G2456' => 'cansat', 'CANSAT56G3031' => 'cansat', 'CANSAT56G4539' => 'cansat', 'CARHR083680' => 'chi', 'CARHR171190' => 'chi', 'CARHR209010' => 'chi', 'CARHR229680' => 'chi', 'CARHR249490' => 'chi', 'Carub.0003s0844' => 'cru', 'Carub.0005s2755' => 'cru', 'Carub.0006s0322' => 'cru', 'Carub.0006s3586' => 'cru', 'Carub.0007s1855' => 'cru', 'Ca_07808_v3' => 'car', 'Ca_09535_v3' => 'car', 'Ca_10548_v3' => 'car', 'Ca_19913_v3' => 'car', 'Ca_19916_v3' => 'car', 'Ca_19975_v3' => 'car', 'CBR_g22876' => 'cbr', 'CBR_g22879' => 'cbr', 'CBR_g38491' => 'cbr', 'CBR_g54185' => 'cbr', 'CBR_g54190' => 'cbr', 'Cc02_g11020' => 'ccan', 'Cc02_g23920' => 'ccan', 'Cc02_g39860' => 'ccan', 'Cc02_g39870' => 'ccan', 'Cc03_g06760' => 'ccan', 'Cc06_g02450' => 'ccan', 'Cc09_g09450' => 'ccan', 'CDE02G1959' => 'cde', 'CDE04G0600' => 'cde', 'CDE07G1996' => 'cde', 'CDE07G2078' => 'cde', 'CDE11G0611' => 'cde', 'Cfa001683' => 'cfa', 'Cfa001734' => 'cfa', 'Cfa001737' => 'cfa', 'Cfa003751' => 'cfa', 'Cfa012019' => 'cfa', 'Cfa017353' => 'cfa', 'Cfa017732' => 'cfa', 'Cfa022464' => 'cfa', 'Ciclev10012400m.g' => 'ccl', 'Ciclev10021242m.g' => 'ccl', 'Ciclev10021302m.g' => 'ccl', 'Ciclev10021463m.g' => 'ccl', 'Ciclev10032359m.g' => 'ccl', 'CiPaw.01G081000' => 'cil', 'CiPaw.01G262500' => 'cil', 'CiPaw.01G269800' => 'cil', 'CiPaw.02G168400' => 'cil', 'CiPaw.05G119500' => 'cil', 'CiPaw.11G147300' => 'cil', 'ClCG01G003630' => 'cla', 'ClCG05G000510' => 'cla', 'ClCG05G002300' => 'cla', 'ClCG08G007650' => 'cla', 'ClCG10G021250' => 'cla', 'COL.COLO4_06218' => 'col', 'COL.COLO4_12538' => 'col', 'COL.COLO4_14775' => 'col', 'COL.COLO4_23875' => 'col', 'Cpa.g.sc141.16' => 'cpa', 'Cpa.g.sc169.16' => 'cpa', 'Cpa.g.sc244.4' => 'cpa', 'Cpa.g.sc244.5' => 'cpa', 'Cpa.g.sc29.87' => 'cpa', 'Cpa.g.sc53.115' => 'cpa', 'Cre03.g207502' => 'cre', 'Cre06.g277000' => 'cre', 'Cre09.g394050' => 'cre', 'CsaV3_3G007680' => 'csa', 'CsaV3_3G009710' => 'csa', 'CsaV3_3G034790' => 'csa', 'CsaV3_5G003750' => 'csa', 'CsaV3_6G036620' => 'csa', 'CSS0002288' => 'camsi', 'CSS0011250' => 'camsi', 'CSS0021619' => 'camsi', 'CSS0046701' => 'camsi', 'DCAR_006420' => 'dca', 'DCAR_006865' => 'dca', 'DCAR_008558' => 'dca', 'DCAR_028754' => 'dca', 'DCAR_028755' => 'dca', 'Dinv31218' => 'din', 'Dinv32371' => 'din', 'Dinv34250' => 'din', 'Dinv37156' => 'din', 'Dinv43704' => 'din', 'Duzib093G1811' => 'dzi', 'Duzib106G1622' => 'dzi', 'Duzib114G0504' => 'dzi', 'Duzib128G0338' => 'dzi', 'Duzib128G1577' => 'dzi', 'Duzib133G0104' => 'dzi', 'Duzib133G1080' => 'dzi', 'Duzib138G0324' => 'dzi', 'Duzib138G0394' => 'dzi', 'Duzib205G0122' => 'dzi', 'Duzib268G1020' => 'dzi', 'Duzib268G1359' => 'dzi', 'ECA232G3929' => 'eca', 'ECA236G2210' => 'eca', 'ECA236G2287' => 'eca', 'ECA240G4568' => 'eca', 'ECA247G0894' => 'eca', 'EL10Ac1g00200' => 'bvu', 'EL10Ac1g00886' => 'bvu', 'EL10As1g23091' => 'bvu', 'EL10As1g23092' => 'bvu', 'Eucgr.A01284' => 'egr', 'Eucgr.A01285' => 'egr', 'Eucgr.D02456' => 'egr', 'Eucgr.E00018' => 'egr', 'Eucgr.E01439' => 'egr', 'Eucgr.G02859' => 'egr', 'FAN01G0168' => 'fan', 'FAN01G0453' => 'fan', 'FAN01G2761' => 'fan', 'FAN02G1239' => 'fan', 'FAN03G0645' => 'fan', 'FAN03G2707' => 'fan', 'FAN03G2978' => 'fan', 'FAN04G0227' => 'fan', 'FAN06G0091' => 'fan', 'FAN06G1418' => 'fan', 'FAN06G1512' => 'fan', 'FAN06G1986' => 'fan', 'FAN06G2905' => 'fan', 'FAN06G4325' => 'fan', 'FAN08G0033' => 'fan', 'FAN09G0642' => 'fan', 'FAN10G1763' => 'fan', 'FAN10G2026' => 'fan', 'FAN10G2513' => 'fan', 'FAN10G3402' => 'fan', 'FAN10G3564' => 'fan', 'FAN10G3987' => 'fan', 'FAN13G1490' => 'fan', 'FAN14G5857' => 'fan', 'FAN18G1188' => 'fan', 'FvH4_5g00750' => 'fve', 'FvH4_6g13410' => 'fve', 'FvH4_7g11740' => 'fve', 'FvH4_7g17410' => 'fve', 'FvH4_7g18860' => 'fve', 'Glyma.01G099100' => 'gma', 'Glyma.01G142300' => 'gma', 'Glyma.03G025500' => 'gma', 'Glyma.03G069700' => 'gma', 'Glyma.03G260000' => 'gma', 'Glyma.09G269800' => 'gma', 'Glyma.10G208700' => 'gma', 'Glyma.18G220400' => 'gma', 'Glyma.20G182000' => 'gma', 'Gohir.A01G221726' => 'ghi', 'Gohir.A07G134600' => 'ghi', 'Gohir.A07G146000' => 'ghi', 'Gohir.A08G173900' => 'ghi', 'Gohir.A09G194900' => 'ghi', 'Gohir.A10G204100' => 'ghi', 'Gohir.A11G080600' => 'ghi', 'Gohir.A11G327500' => 'ghi', 'Gohir.A12G101800' => 'ghi', 'Gohir.D01G211200' => 'ghi', 'Gohir.D07G139200' => 'ghi', 'Gohir.D07G152100' => 'ghi', 'Gohir.D08G192600' => 'ghi', 'Gohir.D09G189200' => 'ghi', 'Gohir.D10G212000' => 'ghi', 'Gohir.D11G085200' => 'ghi', 'Gohir.D11G346400' => 'ghi', 'Gohir.D12G104800' => 'ghi', 'Gorai.001G151300' => 'gra', 'Gorai.001G174100' => 'gra', 'Gorai.002G257000' => 'gra', 'Gorai.004G202600' => 'gra', 'Gorai.007G090900' => 'gra', 'Gorai.007G376700' => 'gra', 'Gorai.008G114100' => 'gra', 'Gorai.011G237900' => 'gra', 'GSVIVG01005450001' => 'vvi', 'GSVIVG01016232001' => 'vvi', 'GSVIVG01026157001' => 'vvi', 'GSVIVG01027419001' => 'vvi', 'GSVIVG01027631001' => 'vvi', 'GSVIVG01034143001' => 'vvi', 'HanXRQChr03g0093921' => 'han', 'HanXRQChr04g0120001' => 'han', 'HanXRQChr04g0122561' => 'han', 'HanXRQChr09g0246851' => 'han', 'HanXRQChr10g0293311' => 'han', 'HanXRQChr13g0425231' => 'han', 'HanXRQChr16g0532571' => 'han', 'Haze_09050' => 'cav', 'Haze_15715' => 'cav', 'Haze_15716' => 'cav', 'Haze_16803' => 'cav', 'Haze_16850' => 'cav', 'Hma1.2p1_0301F.1_g118655' => 'hma', 'Hma1.2p1_0309F.1_g120590' => 'hma', 'Hma1.2p1_0936F.1_g238900' => 'hma', 'Hma1.2p1_3552F.1_g336740' => 'hma', 'HPP92_003520' => 'vpl', 'HPP92_006628' => 'vpl', 'HPP92_006645' => 'vpl', 'HPP92_014669' => 'vpl', 'HPP92_015077' => 'vpl', 'Hund16742' => 'sun', 'Hund17022' => 'sun', 'Lalb_Chr02g0152131' => 'lal', 'Lalb_Chr05g0225371' => 'lal', 'Lalb_Chr07g0189841' => 'lal', 'Lalb_Chr07g0192961' => 'lal', 'Lalb_Chr12g0208221' => 'lal', 'Lalb_Chr13g0291211' => 'lal', 'Lalb_Chr13g0291781' => 'lal', 'Lalb_Chr18g0044651' => 'lal', 'Lalb_Chr21g0313731' => 'lal', 'Lj1g0022533' => 'lja', 'Lj2A18T50' => 'lonja', 'Lj2A92G93' => 'lonja', 'Lj3A965T73' => 'lonja', 'Lj3g0000673' => 'lja', 'Lj3g0002666' => 'lja', 'Lj4g0016985' => 'lja', 'Lj5g0003625' => 'lja', 'Lj7A529G36' => 'lonja', 'Lj9A569T49' => 'lonja', 'Lj9A604T63' => 'lonja', 'Lsat_1_v5_gn_3_132060' => 'lsa', 'Lsat_1_v5_gn_4_68941' => 'lsa', 'Lsat_1_v5_gn_5_95580' => 'lsa', 'Lsat_1_v5_gn_7_161' => 'lsa', 'Lsat_1_v5_gn_7_7041' => 'lsa', 'Lsat_1_v5_gn_9_33481' => 'lsa', 'Lsat_1_v5_gn_9_68260' => 'lsa', 'Manes.01G073100' => 'mes', 'Manes.01G266300' => 'mes', 'Manes.02G033300' => 'mes', 'Manes.05G017900' => 'mes', 'Manes.05G046100' => 'mes', 'Manes.08G080900' => 'mes', 'Manes.10G049400' => 'mes', 'Mapoly0009s0186' => 'mpo', 'Mapoly0036s0118' => 'mpo', 'Mapoly0101s0046' => 'mpo', 'MBI04_g30218_MAGBIO' => 'mbi', 'MBI04_g35564_MAGBIO' => 'mbi', 'MBI12_g34011_MAGBIO' => 'mbi', 'MBI14_g04655_MAGBIO' => 'mbi', 'MCO07G653' => 'mco', 'MCO10G173' => 'mco', 'MD01G1087100' => 'mdo', 'MD01G1104200' => 'mdo', 'MD02G1205100' => 'mdo', 'MD04G1079200' => 'mdo', 'MD04G1131400' => 'mdo', 'MD07G1121600' => 'mdo', 'MD07G1157300' => 'mdo', 'MD07G1171000' => 'mdo', 'MD12G1144500' => 'mdo', 'Medtr1g094610' => 'mtr', 'Medtr4g021795' => 'mtr', 'Medtr4g023760' => 'mtr', 'Medtr7g118050' => 'mtr', 'MELO3C005582.2' => 'cme', 'MELO3C005989.2' => 'cme', 'MELO3C006192.2' => 'cme', 'MELO3C009248.2' => 'cme', 'MELO3C019817.2' => 'cme', 'Migut.B01625' => 'egut', 'Migut.B01915' => 'egut', 'Migut.F01721' => 'egut', 'Migut.J00314' => 'egut', 'MSTRG.20742' => 'ama', 'MSTRG.8134' => 'ama', 'Nitab4.5_0000096g0010' => 'nta', 'Nitab4.5_0000202g0030' => 'nta', 'Nitab4.5_0000216g0370' => 'nta', 'Nitab4.5_0000457g0230' => 'nta', 'Nitab4.5_0001702g0170' => 'nta', 'Nitab4.5_0003607g0010' => 'nta', 'Nitab4.5_0004917g0020' => 'nta', 'Nitab4.5_0007059g0010' => 'nta', 'Nitab4.5_0007184g0010' => 'nta', 'Nitab4.5_0007346g0020' => 'nta', 'Nn1g00410' => 'nnu', 'Nn1g01252' => 'nnu', 'Nn2g11168' => 'nnu', 'Nn2g13403' => 'nnu', 'Nn2g13760' => 'nnu', 'Nn4g26380' => 'nnu', 'Oeu000806.2' => 'oeu', 'Oeu005788.1' => 'oeu', 'Oeu006900.3' => 'oeu', 'Oeu007797.1' => 'oeu', 'Oeu011932.1' => 'oeu', 'Oeu022739.1' => 'oeu', 'Oeu037918.1' => 'oeu', 'Oeu055490.2' => 'oeu', 'Os01g0844400' => 'osa', 'Os02g0819100' => 'osa', 'Os03g0804300' => 'osa', 'Os05g0458000' => 'osa', 'Os07g0467800' => 'osa', 'Os12g0602200' => 'osa', 'Peaxi162Scf00013g03444' => 'pax', 'Peaxi162Scf00094g01120' => 'pax', 'Peaxi162Scf00191g01211' => 'pax', 'Peaxi162Scf00238g01110' => 'pax', 'Peaxi162Scf00330g00719' => 'pax', 'Peaxi162Scf00627g00018' => 'pax', 'PGR031G2686' => 'pgr', 'PGR042G0809' => 'pgr', 'PGR142G0193' => 'pgr', 'PGSC0003DMG400011066' => 'stu', 'PGSC0003DMG400012041' => 'stu', 'PGSC0003DMG400013678' => 'stu', 'PGSC0003DMG400023477' => 'stu', 'PGSC0003DMG400025956' => 'stu', 'PGSC0003DMG401019151' => 'stu', 'Phvul.006G116400' => 'pvu', 'Phvul.007G097300' => 'pvu', 'Phvul.010G015000' => 'pvu', 'Phvul.010G083900' => 'pvu', 'Potri.001G117100' => 'ptr', 'Potri.002G147300' => 'ptr', 'Potri.003G115600' => 'ptr', 'Potri.006G087400' => 'ptr', 'Potri.010G226100' => 'ptr', 'Potri.014G069200' => 'ptr', 'Potri.014G104000' => 'ptr', 'Potri.016G100200' => 'ptr', 'Pp3c10_20450' => 'ppa', 'Pp3c1_42400' => 'ppa', 'Pp3c3_24390' => 'ppa', 'Pp3c3_2860' => 'ppa', 'PRCOL_00003193' => 'pco', 'Prupe.2G144500' => 'ppe', 'Prupe.2G195700' => 'ppe', 'Prupe.2G209800' => 'ppe', 'Prupe.5G080000' => 'ppe', 'Prupe.6G257900' => 'ppe', 'Psat3g001160' => 'psa', 'Psat6g181880' => 'psa', 'Psat7g233720' => 'psa', 'PSO063G7587' => 'pso', 'PSO339G2145' => 'pso', 'PSO339G3369' => 'pso', 'PSO478G2747' => 'pso', 'PSO513G0140' => 'pso', 'PSO782G1614' => 'pso', 'PSO782G4889' => 'pso', 'PSO782G5485' => 'pso', 'PSO801G0241' => 'pso', 'QL07p048854' => 'qlo', 'QL08p046745' => 'qlo', 'QL08p052606' => 'qlo', 'QL08p053414' => 'qlo', 'QL08p054868' => 'qlo', 'RcHm_v2.0_Chr1g0350251' => 'rch', 'RcHm_v2.0_Chr1g0360851' => 'rch', 'RcHm_v2.0_Chr1g0362791' => 'rch', 'RcHm_v2.0_Chr3g0466281' => 'rch', 'RcHm_v2.0_Chr7g0201481' => 'rch', 'Rhsim01G0148600' => 'rsi', 'Rhsim05G0194400' => 'rsi', 'Rhsim07G0000700' => 'rsi', 'Rhsim07G0000800' => 'rsi', 'Rhsim07G0027900' => 'rsi', 'Rhsim09G0149500' => 'rsi', 'RhsimUnG0186900' => 'rsi', 'Sabra01G0089900' => 'sbr', 'Sabra02G0114700' => 'sbr', 'Sabra02G0116300' => 'sbr', 'Sabra03G0080100' => 'sbr', 'Sabra08G0024300' => 'sbr', 'Sabra10G0174300' => 'sbr', 'Sabra14G0048900' => 'sbr', 'Sabra14G0076500' => 'sbr', 'SalBow5G2513' => 'sbo', 'Sc01g0002300' => 'sci', 'Sc01g0004450' => 'sci', 'Sc06g0001680' => 'sci', 'Sc23g0003580' => 'sci', 'Sed0000913' => 'sed', 'Sed0001655' => 'sed', 'Sed0007745' => 'sed', 'Sed0010951' => 'sed', 'Sed0017599' => 'sed', 'Sed0021405' => 'sed', 'Sed0022810' => 'sed', 'SEGI_07099' => 'sgi', 'SEGI_11931' => 'sgi', 'SEGI_13187' => 'sgi', 'SEGI_29958' => 'sgi', 'SEGI_36351' => 'sgi', 'SGA_v2.0_scaffold126G33770' => 'sas', 'SGA_v2.0_scaffold153G37003' => 'sas', 'SGA_v2.0_scaffold2G01359' => 'sas', 'SGA_v2.0_scaffold5G03064' => 'sas', 'SGA_v2.0_scaffold95G28903' => 'sas', 'SHI12701' => 'shi', 'SHI26410' => 'shi', 'SHI38997' => 'shi', 'SHI53759' => 'shi', 'SHI53886' => 'shi', 'SHI54714' => 'shi', 'SMO011G0041' => 'smo', 'SMO146G0251' => 'smo', 'SMO160G0004' => 'smo', 'SMO174G0057' => 'smo', 'SMO244G0089' => 'smo', 'SMO296G0011' => 'smo', 'Solyc01g091280.3' => 'sly', 'Solyc05g047610.3' => 'sly', 'Solyc05g047640.3' => 'sly', 'Solyc05g055630.3' => 'sly', 'Solyc10g018160.2' => 'sly', 'Solyc10g084820.2' => 'sly', 'Solyc10g086565.2' => 'sly', 'Sopen01g037030' => 'spe', 'Sopen05g027920' => 'spe', 'Sopen05g034070' => 'spe', 'Sopen10g007260' => 'spe', 'Sopen10g034260' => 'spe', 'Sopen10g035950' => 'spe', 'Sp3g07710' => 'spa', 'Sp4g27420' => 'spa', 'Sp5g02450' => 'spa', 'Sp6g01280' => 'spa', 'Sp6g38480' => 'spa', 'Sp7g20780' => 'spa', 'TAR374G1413' => 'tar', 'TAR623G1777' => 'tar', 'TAR629G2370' => 'tar', 'TAR633G1759' => 'tar', 'TAR636G3387' => 'tar', 'THA.LOC104802447' => 'tha', 'THA.LOC104813916' => 'tha', 'THA.LOC104816423' => 'tha', 'THA.LOC104817246' => 'tha', 'THA.LOC104825895' => 'tha', 'Thecc.01G335200' => 'tca', 'Thecc.01G377400' => 'tca', 'Thecc.03G262200' => 'tca', 'Thecc.05G036800' => 'tca', 'Thecc.10G080500' => 'tca', 'Thecc.10G080800' => 'tca', 'Thhalv10001560m.g' => 'esa', 'Thhalv10006120m.g' => 'esa', 'Thhalv10014375m.g' => 'esa', 'Thhalv10021264m.g' => 'esa', 'Thhalv10028856m.g' => 'esa', 'TPR.G1914' => 'tpr', 'TPR.G4757' => 'tpr', 'TPR.G5595' => 'tpr', 'TWI14G0952' => 'twi', 'TWI14G1307' => 'twi', 'TWI38G2143' => 'twi', 'TWI59G0826' => 'twi', 'TWI77G0527' => 'twi', 'TWI81G0150' => 'twi', 'unitig_21.g21018' => 'ugi', 'unitig_26.g9725' => 'ugi', 'unitig_744.g24653' => 'ugi', 'unitig_749.g13778' => 'ugi', 'unitig_899.g15035' => 'ugi', 'vmacro04296' => 'vma', 'vmacro04852' => 'vma', 'vmacro13404' => 'vma', 'vmacro20169' => 'vma', 'vmacro21014' => 'vma', 'VMungo0331G0237' => 'vmu', 'VMungo0331G0706' => 'vmu', 'VMungo0331G1361' => 'vmu', 'VMungo0331G1489' => 'vmu', 'VMungo0540G1037' => 'vmu', 'VMungo0720G2487' => 'vmu', 'VMungo0720G2721' => 'vmu', 'Zm00001eb086860' => 'zma', 'Zm00001eb104760' => 'zma', 'Zm00001eb148220' => 'zma', 'Zm00001eb259030' => 'zma', 'Zm00001eb289590' => 'zma', 'Zm00001eb420150' => 'zma' ) $gf_id = 'HOM05D000968' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000968' ) $data_identifier = 'HOM05D000968' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 19, 'bol' => (int) 9, 'bra' => (int) 12, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 5, 'ccan' => (int) 7, 'cde' => (int) 5, 'cfa' => (int) 8, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 4, 'dca' => (int) 5, 'din' => (int) 5, 'dzi' => (int) 12, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 25, 'fve' => (int) 5, 'gma' => (int) 9, 'ghi' => (int) 18, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 7, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 5, 'sun' => (int) 2, 'lal' => (int) 9, 'lja' => (int) 5, 'lonja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 9, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 2, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 3, 'stu' => (int) 6, 'pvu' => (int) 4, 'ptr' => (int) 8, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 3, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 1, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 5, 'sas' => (int) 5, 'shi' => (int) 6, 'smo' => (int) 6, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 3, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420150' $species_info = array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ) $local_species = 'fan' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000968', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p31690' => 'bna', 'A03p36040' => 'bna', 'A03p53730' => 'bna', 'A04p01410' => 'bna', 'A05p05420' => 'bna', 'A05p39630' => 'bna', 'A05p39640' => 'bna', 'A09p00970' => 'bna', 'A09p53060' => 'bna', 'A10p31890' => 'bna', 'Aa31LG10G15040' => 'aar', 'Aa31LG1G21090' => 'aar', 'Aa31LG1G26900' => 'aar', 'Aa31LG3G1820' => 'aar', 'Aa31LG5G1100' => 'aar', 'Aa31LG6G4740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2265' => 'aag', 'Actinidia07998' => 'ach', 'Actinidia11266' => 'ach', 'Actinidia12682' => 'ach', 'Actinidia26479' => 'ach', 'Actinidia31406' => 'ach', 'Actinidia32437' => 'ach', 'Actinidia38862' => 'ach', 'Ah.05g174230' => 'amhyb', 'Ah.05g179070' => 'amhyb', 'Ah.05g179090' => 'amhyb', 'Ah.12g059950' => 'amhyb', 'AL3G20480' => 'aly', 'AL4G44520' => 'aly', 'AL5G43110' => 'aly', 'AL6G13890' => 'aly', 'AL6G52620' => 'aly', 'AL7G30830' => 'aly', 'Aqoxy1G00899' => 'aox', 'Aqoxy5G04333' => 'aox', 'Aqoxy7G00641' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3IZ0NN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4EF6AW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W9P8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79GA3M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C43NQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFCU6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G95YVJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCHK29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LU1UG8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX91RN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGB4B1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8DA0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9H7JI' => 'arhy', 'AT3G09320' => 'ath', 'AT3G60800' => 'ath', 'AT4G00840' => 'ath', 'AT4G22750' => 'ath', 'AT5G04270' => 'ath', 'ATR0090G003' => 'atr', 'ATR0559G349' => 'atr', 'ATR0680G261' => 'atr', 'ATR0810G048' => 'atr', 'Atru.chr12.831' => 'acertr', 'Atru.chr5.303' => 'acertr', 'Atru.chr5.748' => 'acertr', 'Atru.chr8.1999' => 'acertr', 'Atru.chr9.1436' => 'acertr', 'AUR62004211' => 'cqu', 'AUR62004548' => 'cqu', 'AUR62013637' => 'cqu', 'AUR62022662' => 'cqu', 'AUR62025777' => 'cqu', 'AUR62042386' => 'cqu', 'BcaB01g02310' => 'bca', 'BcaB01g06062' => 'bca', 'BcaB02g08975' => 'bca', 'BcaB02g08980' => 'bca', 'BcaC01g04228' => 'bca', 'BcaC01g06830' => 'bca', 'BcaC02g10186' => 'bca', 'BcaC02g12214' => 'bca', 'BcaC04g24101' => 'bca', 'BcaC05g29520' => 'bca', 'BcaC05g29661' => 'bca', 'BcaC06g32130' => 'bca', 'BcaC06g32131' => 'bca', 'BcaC07g40601' => 'bca', 'BcaC07g42641' => 'bca', 'BcaNung01038' => 'bca', 'BcaNung01676' => 'bca', 'BcaNung02480' => 'bca', 'BcaNung07376' => 'bca', 'BolC3t16146H' => 'bol', 'BolC3t16637H' => 'bol', 'BolC4t22257H' => 'bol', 'BolC4t24728H' => 'bol', 'BolC5t34517H' => 'bol', 'BolC7t45703H' => 'bol', 'BolC8t51166H' => 'bol', 'BolC9t53038H' => 'bol', 'BolC9t60000H' => 'bol', 'BraA01t01345Z' => 'bra', 'BraA01t01346Z' => 'bra', 'BraA01t01348Z' => 'bra', 'BraA03t12347Z' => 'bra', 'BraA03t12775Z' => 'bra', 'BraA03t14439Z' => 'bra', 'BraA04t15860Z' => 'bra', 'BraA05t19511Z' => 'bra', 'BraA05t22746Z' => 'bra', 'BraA09t35767Z' => 'bra', 'BraA09t40732Z' => 'bra', 'BraA10t45233Z' => 'bra', 'C03p38720' => 'bna', 'C03p43680' => 'bna', 'C04p06350' => 'bna', 'C04p31800' => 'bna', 'C05p58680' => 'bna', 'C07p52110' => 'bna', 'C08p35760' => 'bna', 'C09p01050' => 'bna', 'C09p72600' => 'bna', 'CAN.G106.2' => 'can', 'CAN.G1482.1' => 'can', 'CAN.G324.12' => 'can', 'CAN.G388.20' => 'can', 'CAN.G412.7' => 'can', 'CAN.G694.32' => 'can', 'CAN.G92.12' => 'can', 'CANSAT11G2353' => 'cansat', 'CANSAT21G1398' => 'cansat', 'CANSAT56G2456' => 'cansat', 'CANSAT56G3031' => 'cansat', 'CANSAT56G4539' => 'cansat', 'CARHR083680' => 'chi', 'CARHR171190' => 'chi', 'CARHR209010' => 'chi', 'CARHR229680' => 'chi', 'CARHR249490' => 'chi', 'Carub.0003s0844' => 'cru', 'Carub.0005s2755' => 'cru', 'Carub.0006s0322' => 'cru', 'Carub.0006s3586' => 'cru', 'Carub.0007s1855' => 'cru', 'Ca_07808_v3' => 'car', 'Ca_09535_v3' => 'car', 'Ca_10548_v3' => 'car', 'Ca_19913_v3' => 'car', 'Ca_19916_v3' => 'car', 'Ca_19975_v3' => 'car', 'CBR_g22876' => 'cbr', 'CBR_g22879' => 'cbr', 'CBR_g38491' => 'cbr', 'CBR_g54185' => 'cbr', 'CBR_g54190' => 'cbr', 'Cc02_g11020' => 'ccan', 'Cc02_g23920' => 'ccan', 'Cc02_g39860' => 'ccan', 'Cc02_g39870' => 'ccan', 'Cc03_g06760' => 'ccan', 'Cc06_g02450' => 'ccan', 'Cc09_g09450' => 'ccan', 'CDE02G1959' => 'cde', 'CDE04G0600' => 'cde', 'CDE07G1996' => 'cde', 'CDE07G2078' => 'cde', 'CDE11G0611' => 'cde', 'Cfa001683' => 'cfa', 'Cfa001734' => 'cfa', 'Cfa001737' => 'cfa', 'Cfa003751' => 'cfa', 'Cfa012019' => 'cfa', 'Cfa017353' => 'cfa', 'Cfa017732' => 'cfa', 'Cfa022464' => 'cfa', 'Ciclev10012400m.g' => 'ccl', 'Ciclev10021242m.g' => 'ccl', 'Ciclev10021302m.g' => 'ccl', 'Ciclev10021463m.g' => 'ccl', 'Ciclev10032359m.g' => 'ccl', 'CiPaw.01G081000' => 'cil', 'CiPaw.01G262500' => 'cil', 'CiPaw.01G269800' => 'cil', 'CiPaw.02G168400' => 'cil', 'CiPaw.05G119500' => 'cil', 'CiPaw.11G147300' => 'cil', 'ClCG01G003630' => 'cla', 'ClCG05G000510' => 'cla', 'ClCG05G002300' => 'cla', 'ClCG08G007650' => 'cla', 'ClCG10G021250' => 'cla', 'COL.COLO4_06218' => 'col', 'COL.COLO4_12538' => 'col', 'COL.COLO4_14775' => 'col', 'COL.COLO4_23875' => 'col', 'Cpa.g.sc141.16' => 'cpa', 'Cpa.g.sc169.16' => 'cpa', 'Cpa.g.sc244.4' => 'cpa', 'Cpa.g.sc244.5' => 'cpa', 'Cpa.g.sc29.87' => 'cpa', 'Cpa.g.sc53.115' => 'cpa', 'Cre03.g207502' => 'cre', 'Cre06.g277000' => 'cre', 'Cre09.g394050' => 'cre', 'CsaV3_3G007680' => 'csa', 'CsaV3_3G009710' => 'csa', 'CsaV3_3G034790' => 'csa', 'CsaV3_5G003750' => 'csa', 'CsaV3_6G036620' => 'csa', 'CSS0002288' => 'camsi', 'CSS0011250' => 'camsi', 'CSS0021619' => 'camsi', 'CSS0046701' => 'camsi', 'DCAR_006420' => 'dca', 'DCAR_006865' => 'dca', 'DCAR_008558' => 'dca', 'DCAR_028754' => 'dca', 'DCAR_028755' => 'dca', 'Dinv31218' => 'din', 'Dinv32371' => 'din', 'Dinv34250' => 'din', 'Dinv37156' => 'din', 'Dinv43704' => 'din', 'Duzib093G1811' => 'dzi', 'Duzib106G1622' => 'dzi', 'Duzib114G0504' => 'dzi', 'Duzib128G0338' => 'dzi', 'Duzib128G1577' => 'dzi', 'Duzib133G0104' => 'dzi', 'Duzib133G1080' => 'dzi', 'Duzib138G0324' => 'dzi', 'Duzib138G0394' => 'dzi', 'Duzib205G0122' => 'dzi', 'Duzib268G1020' => 'dzi', 'Duzib268G1359' => 'dzi', 'ECA232G3929' => 'eca', 'ECA236G2210' => 'eca', 'ECA236G2287' => 'eca', 'ECA240G4568' => 'eca', 'ECA247G0894' => 'eca', 'EL10Ac1g00200' => 'bvu', 'EL10Ac1g00886' => 'bvu', 'EL10As1g23091' => 'bvu', 'EL10As1g23092' => 'bvu', 'Eucgr.A01284' => 'egr', 'Eucgr.A01285' => 'egr', 'Eucgr.D02456' => 'egr', 'Eucgr.E00018' => 'egr', 'Eucgr.E01439' => 'egr', 'Eucgr.G02859' => 'egr', 'FAN01G0168' => 'fan', 'FAN01G0453' => 'fan', 'FAN01G2761' => 'fan', 'FAN02G1239' => 'fan', 'FAN03G0645' => 'fan', 'FAN03G2707' => 'fan', 'FAN03G2978' => 'fan', 'FAN04G0227' => 'fan', 'FAN06G0091' => 'fan', 'FAN06G1418' => 'fan', 'FAN06G1512' => 'fan', 'FAN06G1986' => 'fan', 'FAN06G2905' => 'fan', 'FAN06G4325' => 'fan', 'FAN08G0033' => 'fan', 'FAN09G0642' => 'fan', 'FAN10G1763' => 'fan', 'FAN10G2026' => 'fan', 'FAN10G2513' => 'fan', 'FAN10G3402' => 'fan', 'FAN10G3564' => 'fan', 'FAN10G3987' => 'fan', 'FAN13G1490' => 'fan', 'FAN14G5857' => 'fan', 'FAN18G1188' => 'fan', 'FvH4_5g00750' => 'fve', 'FvH4_6g13410' => 'fve', 'FvH4_7g11740' => 'fve', 'FvH4_7g17410' => 'fve', 'FvH4_7g18860' => 'fve', 'Glyma.01G099100' => 'gma', 'Glyma.01G142300' => 'gma', 'Glyma.03G025500' => 'gma', 'Glyma.03G069700' => 'gma', 'Glyma.03G260000' => 'gma', 'Glyma.09G269800' => 'gma', 'Glyma.10G208700' => 'gma', 'Glyma.18G220400' => 'gma', 'Glyma.20G182000' => 'gma', 'Gohir.A01G221726' => 'ghi', 'Gohir.A07G134600' => 'ghi', 'Gohir.A07G146000' => 'ghi', 'Gohir.A08G173900' => 'ghi', 'Gohir.A09G194900' => 'ghi', 'Gohir.A10G204100' => 'ghi', 'Gohir.A11G080600' => 'ghi', 'Gohir.A11G327500' => 'ghi', 'Gohir.A12G101800' => 'ghi', 'Gohir.D01G211200' => 'ghi', 'Gohir.D07G139200' => 'ghi', 'Gohir.D07G152100' => 'ghi', 'Gohir.D08G192600' => 'ghi', 'Gohir.D09G189200' => 'ghi', 'Gohir.D10G212000' => 'ghi', 'Gohir.D11G085200' => 'ghi', 'Gohir.D11G346400' => 'ghi', 'Gohir.D12G104800' => 'ghi', 'Gorai.001G151300' => 'gra', 'Gorai.001G174100' => 'gra', 'Gorai.002G257000' => 'gra', 'Gorai.004G202600' => 'gra', 'Gorai.007G090900' => 'gra', 'Gorai.007G376700' => 'gra', 'Gorai.008G114100' => 'gra', 'Gorai.011G237900' => 'gra', 'GSVIVG01005450001' => 'vvi', 'GSVIVG01016232001' => 'vvi', 'GSVIVG01026157001' => 'vvi', 'GSVIVG01027419001' => 'vvi', 'GSVIVG01027631001' => 'vvi', 'GSVIVG01034143001' => 'vvi', 'HanXRQChr03g0093921' => 'han', 'HanXRQChr04g0120001' => 'han', 'HanXRQChr04g0122561' => 'han', 'HanXRQChr09g0246851' => 'han', 'HanXRQChr10g0293311' => 'han', 'HanXRQChr13g0425231' => 'han', 'HanXRQChr16g0532571' => 'han', 'Haze_09050' => 'cav', 'Haze_15715' => 'cav', 'Haze_15716' => 'cav', 'Haze_16803' => 'cav', 'Haze_16850' => 'cav', 'Hma1.2p1_0301F.1_g118655' => 'hma', 'Hma1.2p1_0309F.1_g120590' => 'hma', 'Hma1.2p1_0936F.1_g238900' => 'hma', 'Hma1.2p1_3552F.1_g336740' => 'hma', 'HPP92_003520' => 'vpl', 'HPP92_006628' => 'vpl', 'HPP92_006645' => 'vpl', 'HPP92_014669' => 'vpl', 'HPP92_015077' => 'vpl', 'Hund16742' => 'sun', 'Hund17022' => 'sun', 'Lalb_Chr02g0152131' => 'lal', 'Lalb_Chr05g0225371' => 'lal', 'Lalb_Chr07g0189841' => 'lal', 'Lalb_Chr07g0192961' => 'lal', 'Lalb_Chr12g0208221' => 'lal', 'Lalb_Chr13g0291211' => 'lal', 'Lalb_Chr13g0291781' => 'lal', 'Lalb_Chr18g0044651' => 'lal', 'Lalb_Chr21g0313731' => 'lal', 'Lj1g0022533' => 'lja', 'Lj2A18T50' => 'lonja', 'Lj2A92G93' => 'lonja', 'Lj3A965T73' => 'lonja', 'Lj3g0000673' => 'lja', 'Lj3g0002666' => 'lja', 'Lj4g0016985' => 'lja', 'Lj5g0003625' => 'lja', 'Lj7A529G36' => 'lonja', 'Lj9A569T49' => 'lonja', 'Lj9A604T63' => 'lonja', 'Lsat_1_v5_gn_3_132060' => 'lsa', 'Lsat_1_v5_gn_4_68941' => 'lsa', 'Lsat_1_v5_gn_5_95580' => 'lsa', 'Lsat_1_v5_gn_7_161' => 'lsa', 'Lsat_1_v5_gn_7_7041' => 'lsa', 'Lsat_1_v5_gn_9_33481' => 'lsa', 'Lsat_1_v5_gn_9_68260' => 'lsa', 'Manes.01G073100' => 'mes', 'Manes.01G266300' => 'mes', 'Manes.02G033300' => 'mes', 'Manes.05G017900' => 'mes', 'Manes.05G046100' => 'mes', 'Manes.08G080900' => 'mes', 'Manes.10G049400' => 'mes', 'Mapoly0009s0186' => 'mpo', 'Mapoly0036s0118' => 'mpo', 'Mapoly0101s0046' => 'mpo', 'MBI04_g30218_MAGBIO' => 'mbi', 'MBI04_g35564_MAGBIO' => 'mbi', 'MBI12_g34011_MAGBIO' => 'mbi', 'MBI14_g04655_MAGBIO' => 'mbi', 'MCO07G653' => 'mco', 'MCO10G173' => 'mco', 'MD01G1087100' => 'mdo', 'MD01G1104200' => 'mdo', 'MD02G1205100' => 'mdo', 'MD04G1079200' => 'mdo', 'MD04G1131400' => 'mdo', 'MD07G1121600' => 'mdo', 'MD07G1157300' => 'mdo', 'MD07G1171000' => 'mdo', 'MD12G1144500' => 'mdo', 'Medtr1g094610' => 'mtr', 'Medtr4g021795' => 'mtr', 'Medtr4g023760' => 'mtr', 'Medtr7g118050' => 'mtr', 'MELO3C005582.2' => 'cme', 'MELO3C005989.2' => 'cme', 'MELO3C006192.2' => 'cme', 'MELO3C009248.2' => 'cme', 'MELO3C019817.2' => 'cme', 'Migut.B01625' => 'egut', 'Migut.B01915' => 'egut', 'Migut.F01721' => 'egut', 'Migut.J00314' => 'egut', 'MSTRG.20742' => 'ama', 'MSTRG.8134' => 'ama', 'Nitab4.5_0000096g0010' => 'nta', 'Nitab4.5_0000202g0030' => 'nta', 'Nitab4.5_0000216g0370' => 'nta', 'Nitab4.5_0000457g0230' => 'nta', 'Nitab4.5_0001702g0170' => 'nta', 'Nitab4.5_0003607g0010' => 'nta', 'Nitab4.5_0004917g0020' => 'nta', 'Nitab4.5_0007059g0010' => 'nta', 'Nitab4.5_0007184g0010' => 'nta', 'Nitab4.5_0007346g0020' => 'nta', 'Nn1g00410' => 'nnu', 'Nn1g01252' => 'nnu', 'Nn2g11168' => 'nnu', 'Nn2g13403' => 'nnu', 'Nn2g13760' => 'nnu', 'Nn4g26380' => 'nnu', 'Oeu000806.2' => 'oeu', 'Oeu005788.1' => 'oeu', 'Oeu006900.3' => 'oeu', 'Oeu007797.1' => 'oeu', 'Oeu011932.1' => 'oeu', 'Oeu022739.1' => 'oeu', 'Oeu037918.1' => 'oeu', 'Oeu055490.2' => 'oeu', 'Os01g0844400' => 'osa', 'Os02g0819100' => 'osa', 'Os03g0804300' => 'osa', 'Os05g0458000' => 'osa', 'Os07g0467800' => 'osa', 'Os12g0602200' => 'osa', 'Peaxi162Scf00013g03444' => 'pax', 'Peaxi162Scf00094g01120' => 'pax', 'Peaxi162Scf00191g01211' => 'pax', 'Peaxi162Scf00238g01110' => 'pax', 'Peaxi162Scf00330g00719' => 'pax', 'Peaxi162Scf00627g00018' => 'pax', 'PGR031G2686' => 'pgr', 'PGR042G0809' => 'pgr', 'PGR142G0193' => 'pgr', 'PGSC0003DMG400011066' => 'stu', 'PGSC0003DMG400012041' => 'stu', 'PGSC0003DMG400013678' => 'stu', 'PGSC0003DMG400023477' => 'stu', 'PGSC0003DMG400025956' => 'stu', 'PGSC0003DMG401019151' => 'stu', 'Phvul.006G116400' => 'pvu', 'Phvul.007G097300' => 'pvu', 'Phvul.010G015000' => 'pvu', 'Phvul.010G083900' => 'pvu', 'Potri.001G117100' => 'ptr', 'Potri.002G147300' => 'ptr', 'Potri.003G115600' => 'ptr', 'Potri.006G087400' => 'ptr', 'Potri.010G226100' => 'ptr', 'Potri.014G069200' => 'ptr', 'Potri.014G104000' => 'ptr', 'Potri.016G100200' => 'ptr', 'Pp3c10_20450' => 'ppa', 'Pp3c1_42400' => 'ppa', 'Pp3c3_24390' => 'ppa', 'Pp3c3_2860' => 'ppa', 'PRCOL_00003193' => 'pco', 'Prupe.2G144500' => 'ppe', 'Prupe.2G195700' => 'ppe', 'Prupe.2G209800' => 'ppe', 'Prupe.5G080000' => 'ppe', 'Prupe.6G257900' => 'ppe', 'Psat3g001160' => 'psa', 'Psat6g181880' => 'psa', 'Psat7g233720' => 'psa', 'PSO063G7587' => 'pso', 'PSO339G2145' => 'pso', 'PSO339G3369' => 'pso', 'PSO478G2747' => 'pso', 'PSO513G0140' => 'pso', 'PSO782G1614' => 'pso', 'PSO782G4889' => 'pso', 'PSO782G5485' => 'pso', 'PSO801G0241' => 'pso', 'QL07p048854' => 'qlo', 'QL08p046745' => 'qlo', 'QL08p052606' => 'qlo', 'QL08p053414' => 'qlo', 'QL08p054868' => 'qlo', 'RcHm_v2.0_Chr1g0350251' => 'rch', 'RcHm_v2.0_Chr1g0360851' => 'rch', 'RcHm_v2.0_Chr1g0362791' => 'rch', 'RcHm_v2.0_Chr3g0466281' => 'rch', 'RcHm_v2.0_Chr7g0201481' => 'rch', 'Rhsim01G0148600' => 'rsi', 'Rhsim05G0194400' => 'rsi', 'Rhsim07G0000700' => 'rsi', 'Rhsim07G0000800' => 'rsi', 'Rhsim07G0027900' => 'rsi', 'Rhsim09G0149500' => 'rsi', 'RhsimUnG0186900' => 'rsi', 'Sabra01G0089900' => 'sbr', 'Sabra02G0114700' => 'sbr', 'Sabra02G0116300' => 'sbr', 'Sabra03G0080100' => 'sbr', 'Sabra08G0024300' => 'sbr', 'Sabra10G0174300' => 'sbr', 'Sabra14G0048900' => 'sbr', 'Sabra14G0076500' => 'sbr', 'SalBow5G2513' => 'sbo', 'Sc01g0002300' => 'sci', 'Sc01g0004450' => 'sci', 'Sc06g0001680' => 'sci', 'Sc23g0003580' => 'sci', 'Sed0000913' => 'sed', 'Sed0001655' => 'sed', 'Sed0007745' => 'sed', 'Sed0010951' => 'sed', 'Sed0017599' => 'sed', 'Sed0021405' => 'sed', 'Sed0022810' => 'sed', 'SEGI_07099' => 'sgi', 'SEGI_11931' => 'sgi', 'SEGI_13187' => 'sgi', 'SEGI_29958' => 'sgi', 'SEGI_36351' => 'sgi', 'SGA_v2.0_scaffold126G33770' => 'sas', 'SGA_v2.0_scaffold153G37003' => 'sas', 'SGA_v2.0_scaffold2G01359' => 'sas', 'SGA_v2.0_scaffold5G03064' => 'sas', 'SGA_v2.0_scaffold95G28903' => 'sas', 'SHI12701' => 'shi', 'SHI26410' => 'shi', 'SHI38997' => 'shi', 'SHI53759' => 'shi', 'SHI53886' => 'shi', 'SHI54714' => 'shi', 'SMO011G0041' => 'smo', 'SMO146G0251' => 'smo', 'SMO160G0004' => 'smo', 'SMO174G0057' => 'smo', 'SMO244G0089' => 'smo', 'SMO296G0011' => 'smo', 'Solyc01g091280.3' => 'sly', 'Solyc05g047610.3' => 'sly', 'Solyc05g047640.3' => 'sly', 'Solyc05g055630.3' => 'sly', 'Solyc10g018160.2' => 'sly', 'Solyc10g084820.2' => 'sly', 'Solyc10g086565.2' => 'sly', 'Sopen01g037030' => 'spe', 'Sopen05g027920' => 'spe', 'Sopen05g034070' => 'spe', 'Sopen10g007260' => 'spe', 'Sopen10g034260' => 'spe', 'Sopen10g035950' => 'spe', 'Sp3g07710' => 'spa', 'Sp4g27420' => 'spa', 'Sp5g02450' => 'spa', 'Sp6g01280' => 'spa', 'Sp6g38480' => 'spa', 'Sp7g20780' => 'spa', 'TAR374G1413' => 'tar', 'TAR623G1777' => 'tar', 'TAR629G2370' => 'tar', 'TAR633G1759' => 'tar', 'TAR636G3387' => 'tar', 'THA.LOC104802447' => 'tha', 'THA.LOC104813916' => 'tha', 'THA.LOC104816423' => 'tha', 'THA.LOC104817246' => 'tha', 'THA.LOC104825895' => 'tha', 'Thecc.01G335200' => 'tca', 'Thecc.01G377400' => 'tca', 'Thecc.03G262200' => 'tca', 'Thecc.05G036800' => 'tca', 'Thecc.10G080500' => 'tca', 'Thecc.10G080800' => 'tca', 'Thhalv10001560m.g' => 'esa', 'Thhalv10006120m.g' => 'esa', 'Thhalv10014375m.g' => 'esa', 'Thhalv10021264m.g' => 'esa', 'Thhalv10028856m.g' => 'esa', 'TPR.G1914' => 'tpr', 'TPR.G4757' => 'tpr', 'TPR.G5595' => 'tpr', 'TWI14G0952' => 'twi', 'TWI14G1307' => 'twi', 'TWI38G2143' => 'twi', 'TWI59G0826' => 'twi', 'TWI77G0527' => 'twi', 'TWI81G0150' => 'twi', 'unitig_21.g21018' => 'ugi', 'unitig_26.g9725' => 'ugi', 'unitig_744.g24653' => 'ugi', 'unitig_749.g13778' => 'ugi', 'unitig_899.g15035' => 'ugi', 'vmacro04296' => 'vma', 'vmacro04852' => 'vma', 'vmacro13404' => 'vma', 'vmacro20169' => 'vma', 'vmacro21014' => 'vma', 'VMungo0331G0237' => 'vmu', 'VMungo0331G0706' => 'vmu', 'VMungo0331G1361' => 'vmu', 'VMungo0331G1489' => 'vmu', 'VMungo0540G1037' => 'vmu', 'VMungo0720G2487' => 'vmu', 'VMungo0720G2721' => 'vmu', 'Zm00001eb086860' => 'zma', 'Zm00001eb104760' => 'zma', 'Zm00001eb148220' => 'zma', 'Zm00001eb259030' => 'zma', 'Zm00001eb289590' => 'zma', 'Zm00001eb420150' => 'zma' ), 'gf_id' => 'HOM05D000968', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000968' ), 'data_identifier' => 'HOM05D000968', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000968', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p31690' => 'bna', 'A03p36040' => 'bna', 'A03p53730' => 'bna', 'A04p01410' => 'bna', 'A05p05420' => 'bna', 'A05p39630' => 'bna', 'A05p39640' => 'bna', 'A09p00970' => 'bna', 'A09p53060' => 'bna', 'A10p31890' => 'bna', 'Aa31LG10G15040' => 'aar', 'Aa31LG1G21090' => 'aar', 'Aa31LG1G26900' => 'aar', 'Aa31LG3G1820' => 'aar', 'Aa31LG5G1100' => 'aar', 'Aa31LG6G4740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2265' => 'aag', 'Actinidia07998' => 'ach', 'Actinidia11266' => 'ach', 'Actinidia12682' => 'ach', 'Actinidia26479' => 'ach', 'Actinidia31406' => 'ach', 'Actinidia32437' => 'ach', 'Actinidia38862' => 'ach', 'Ah.05g174230' => 'amhyb', 'Ah.05g179070' => 'amhyb', 'Ah.05g179090' => 'amhyb', 'Ah.12g059950' => 'amhyb', 'AL3G20480' => 'aly', 'AL4G44520' => 'aly', 'AL5G43110' => 'aly', 'AL6G13890' => 'aly', 'AL6G52620' => 'aly', 'AL7G30830' => 'aly', 'Aqoxy1G00899' => 'aox', 'Aqoxy5G04333' => 'aox', 'Aqoxy7G00641' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3IZ0NN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4EF6AW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W9P8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79GA3M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C43NQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFCU6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G95YVJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCHK29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LU1UG8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX91RN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGB4B1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8DA0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9H7JI' => 'arhy', 'AT3G09320' => 'ath', 'AT3G60800' => 'ath', 'AT4G00840' => 'ath', 'AT4G22750' => 'ath', 'AT5G04270' => 'ath', 'ATR0090G003' => 'atr', 'ATR0559G349' => 'atr', 'ATR0680G261' => 'atr', 'ATR0810G048' => 'atr', 'Atru.chr12.831' => 'acertr', 'Atru.chr5.303' => 'acertr', 'Atru.chr5.748' => 'acertr', 'Atru.chr8.1999' => 'acertr', 'Atru.chr9.1436' => 'acertr', 'AUR62004211' => 'cqu', 'AUR62004548' => 'cqu', 'AUR62013637' => 'cqu', 'AUR62022662' => 'cqu', 'AUR62025777' => 'cqu', 'AUR62042386' => 'cqu', 'BcaB01g02310' => 'bca', 'BcaB01g06062' => 'bca', 'BcaB02g08975' => 'bca', 'BcaB02g08980' => 'bca', 'BcaC01g04228' => 'bca', 'BcaC01g06830' => 'bca', 'BcaC02g10186' => 'bca', 'BcaC02g12214' => 'bca', 'BcaC04g24101' => 'bca', 'BcaC05g29520' => 'bca', 'BcaC05g29661' => 'bca', 'BcaC06g32130' => 'bca', 'BcaC06g32131' => 'bca', 'BcaC07g40601' => 'bca', 'BcaC07g42641' => 'bca', 'BcaNung01038' => 'bca', 'BcaNung01676' => 'bca', 'BcaNung02480' => 'bca', 'BcaNung07376' => 'bca', 'BolC3t16146H' => 'bol', 'BolC3t16637H' => 'bol', 'BolC4t22257H' => 'bol', 'BolC4t24728H' => 'bol', 'BolC5t34517H' => 'bol', 'BolC7t45703H' => 'bol', 'BolC8t51166H' => 'bol', 'BolC9t53038H' => 'bol', 'BolC9t60000H' => 'bol', 'BraA01t01345Z' => 'bra', 'BraA01t01346Z' => 'bra', 'BraA01t01348Z' => 'bra', 'BraA03t12347Z' => 'bra', 'BraA03t12775Z' => 'bra', 'BraA03t14439Z' => 'bra', 'BraA04t15860Z' => 'bra', 'BraA05t19511Z' => 'bra', 'BraA05t22746Z' => 'bra', 'BraA09t35767Z' => 'bra', 'BraA09t40732Z' => 'bra', 'BraA10t45233Z' => 'bra', 'C03p38720' => 'bna', 'C03p43680' => 'bna', 'C04p06350' => 'bna', 'C04p31800' => 'bna', 'C05p58680' => 'bna', 'C07p52110' => 'bna', 'C08p35760' => 'bna', 'C09p01050' => 'bna', 'C09p72600' => 'bna', 'CAN.G106.2' => 'can', 'CAN.G1482.1' => 'can', 'CAN.G324.12' => 'can', 'CAN.G388.20' => 'can', 'CAN.G412.7' => 'can', 'CAN.G694.32' => 'can', 'CAN.G92.12' => 'can', 'CANSAT11G2353' => 'cansat', 'CANSAT21G1398' => 'cansat', 'CANSAT56G2456' => 'cansat', 'CANSAT56G3031' => 'cansat', 'CANSAT56G4539' => 'cansat', 'CARHR083680' => 'chi', 'CARHR171190' => 'chi', 'CARHR209010' => 'chi', 'CARHR229680' => 'chi', 'CARHR249490' => 'chi', 'Carub.0003s0844' => 'cru', 'Carub.0005s2755' => 'cru', 'Carub.0006s0322' => 'cru', 'Carub.0006s3586' => 'cru', 'Carub.0007s1855' => 'cru', 'Ca_07808_v3' => 'car', 'Ca_09535_v3' => 'car', 'Ca_10548_v3' => 'car', 'Ca_19913_v3' => 'car', 'Ca_19916_v3' => 'car', 'Ca_19975_v3' => 'car', 'CBR_g22876' => 'cbr', 'CBR_g22879' => 'cbr', 'CBR_g38491' => 'cbr', 'CBR_g54185' => 'cbr', 'CBR_g54190' => 'cbr', 'Cc02_g11020' => 'ccan', 'Cc02_g23920' => 'ccan', 'Cc02_g39860' => 'ccan', 'Cc02_g39870' => 'ccan', 'Cc03_g06760' => 'ccan', 'Cc06_g02450' => 'ccan', 'Cc09_g09450' => 'ccan', 'CDE02G1959' => 'cde', 'CDE04G0600' => 'cde', 'CDE07G1996' => 'cde', 'CDE07G2078' => 'cde', 'CDE11G0611' => 'cde', 'Cfa001683' => 'cfa', 'Cfa001734' => 'cfa', 'Cfa001737' => 'cfa', 'Cfa003751' => 'cfa', 'Cfa012019' => 'cfa', 'Cfa017353' => 'cfa', 'Cfa017732' => 'cfa', 'Cfa022464' => 'cfa', 'Ciclev10012400m.g' => 'ccl', 'Ciclev10021242m.g' => 'ccl', 'Ciclev10021302m.g' => 'ccl', 'Ciclev10021463m.g' => 'ccl', 'Ciclev10032359m.g' => 'ccl', 'CiPaw.01G081000' => 'cil', 'CiPaw.01G262500' => 'cil', 'CiPaw.01G269800' => 'cil', 'CiPaw.02G168400' => 'cil', 'CiPaw.05G119500' => 'cil', 'CiPaw.11G147300' => 'cil', 'ClCG01G003630' => 'cla', 'ClCG05G000510' => 'cla', 'ClCG05G002300' => 'cla', 'ClCG08G007650' => 'cla', 'ClCG10G021250' => 'cla', 'COL.COLO4_06218' => 'col', 'COL.COLO4_12538' => 'col', 'COL.COLO4_14775' => 'col', 'COL.COLO4_23875' => 'col', 'Cpa.g.sc141.16' => 'cpa', 'Cpa.g.sc169.16' => 'cpa', 'Cpa.g.sc244.4' => 'cpa', 'Cpa.g.sc244.5' => 'cpa', 'Cpa.g.sc29.87' => 'cpa', 'Cpa.g.sc53.115' => 'cpa', 'Cre03.g207502' => 'cre', 'Cre06.g277000' => 'cre', 'Cre09.g394050' => 'cre', 'CsaV3_3G007680' => 'csa', 'CsaV3_3G009710' => 'csa', 'CsaV3_3G034790' => 'csa', 'CsaV3_5G003750' => 'csa', 'CsaV3_6G036620' => 'csa', 'CSS0002288' => 'camsi', 'CSS0011250' => 'camsi', 'CSS0021619' => 'camsi', 'CSS0046701' => 'camsi', 'DCAR_006420' => 'dca', 'DCAR_006865' => 'dca', 'DCAR_008558' => 'dca', 'DCAR_028754' => 'dca', 'DCAR_028755' => 'dca', 'Dinv31218' => 'din', 'Dinv32371' => 'din', 'Dinv34250' => 'din', 'Dinv37156' => 'din', 'Dinv43704' => 'din', 'Duzib093G1811' => 'dzi', 'Duzib106G1622' => 'dzi', 'Duzib114G0504' => 'dzi', 'Duzib128G0338' => 'dzi', 'Duzib128G1577' => 'dzi', 'Duzib133G0104' => 'dzi', 'Duzib133G1080' => 'dzi', 'Duzib138G0324' => 'dzi', 'Duzib138G0394' => 'dzi', 'Duzib205G0122' => 'dzi', 'Duzib268G1020' => 'dzi', 'Duzib268G1359' => 'dzi', 'ECA232G3929' => 'eca', 'ECA236G2210' => 'eca', 'ECA236G2287' => 'eca', 'ECA240G4568' => 'eca', 'ECA247G0894' => 'eca', 'EL10Ac1g00200' => 'bvu', 'EL10Ac1g00886' => 'bvu', 'EL10As1g23091' => 'bvu', 'EL10As1g23092' => 'bvu', 'Eucgr.A01284' => 'egr', 'Eucgr.A01285' => 'egr', 'Eucgr.D02456' => 'egr', 'Eucgr.E00018' => 'egr', 'Eucgr.E01439' => 'egr', 'Eucgr.G02859' => 'egr', 'FAN01G0168' => 'fan', 'FAN01G0453' => 'fan', 'FAN01G2761' => 'fan', 'FAN02G1239' => 'fan', 'FAN03G0645' => 'fan', 'FAN03G2707' => 'fan', 'FAN03G2978' => 'fan', 'FAN04G0227' => 'fan', 'FAN06G0091' => 'fan', 'FAN06G1418' => 'fan', 'FAN06G1512' => 'fan', 'FAN06G1986' => 'fan', 'FAN06G2905' => 'fan', 'FAN06G4325' => 'fan', 'FAN08G0033' => 'fan', 'FAN09G0642' => 'fan', 'FAN10G1763' => 'fan', 'FAN10G2026' => 'fan', 'FAN10G2513' => 'fan', 'FAN10G3402' => 'fan', 'FAN10G3564' => 'fan', 'FAN10G3987' => 'fan', 'FAN13G1490' => 'fan', 'FAN14G5857' => 'fan', 'FAN18G1188' => 'fan', 'FvH4_5g00750' => 'fve', 'FvH4_6g13410' => 'fve', 'FvH4_7g11740' => 'fve', 'FvH4_7g17410' => 'fve', 'FvH4_7g18860' => 'fve', 'Glyma.01G099100' => 'gma', 'Glyma.01G142300' => 'gma', 'Glyma.03G025500' => 'gma', 'Glyma.03G069700' => 'gma', 'Glyma.03G260000' => 'gma', 'Glyma.09G269800' => 'gma', 'Glyma.10G208700' => 'gma', 'Glyma.18G220400' => 'gma', 'Glyma.20G182000' => 'gma', 'Gohir.A01G221726' => 'ghi', 'Gohir.A07G134600' => 'ghi', 'Gohir.A07G146000' => 'ghi', 'Gohir.A08G173900' => 'ghi', 'Gohir.A09G194900' => 'ghi', 'Gohir.A10G204100' => 'ghi', 'Gohir.A11G080600' => 'ghi', 'Gohir.A11G327500' => 'ghi', 'Gohir.A12G101800' => 'ghi', 'Gohir.D01G211200' => 'ghi', 'Gohir.D07G139200' => 'ghi', 'Gohir.D07G152100' => 'ghi', 'Gohir.D08G192600' => 'ghi', 'Gohir.D09G189200' => 'ghi', 'Gohir.D10G212000' => 'ghi', 'Gohir.D11G085200' => 'ghi', 'Gohir.D11G346400' => 'ghi', 'Gohir.D12G104800' => 'ghi', 'Gorai.001G151300' => 'gra', 'Gorai.001G174100' => 'gra', 'Gorai.002G257000' => 'gra', 'Gorai.004G202600' => 'gra', 'Gorai.007G090900' => 'gra', 'Gorai.007G376700' => 'gra', 'Gorai.008G114100' => 'gra', 'Gorai.011G237900' => 'gra', 'GSVIVG01005450001' => 'vvi', 'GSVIVG01016232001' => 'vvi', 'GSVIVG01026157001' => 'vvi', 'GSVIVG01027419001' => 'vvi', 'GSVIVG01027631001' => 'vvi', 'GSVIVG01034143001' => 'vvi', 'HanXRQChr03g0093921' => 'han', 'HanXRQChr04g0120001' => 'han', 'HanXRQChr04g0122561' => 'han', 'HanXRQChr09g0246851' => 'han', 'HanXRQChr10g0293311' => 'han', 'HanXRQChr13g0425231' => 'han', 'HanXRQChr16g0532571' => 'han', 'Haze_09050' => 'cav', 'Haze_15715' => 'cav', 'Haze_15716' => 'cav', 'Haze_16803' => 'cav', 'Haze_16850' => 'cav', 'Hma1.2p1_0301F.1_g118655' => 'hma', 'Hma1.2p1_0309F.1_g120590' => 'hma', 'Hma1.2p1_0936F.1_g238900' => 'hma', 'Hma1.2p1_3552F.1_g336740' => 'hma', 'HPP92_003520' => 'vpl', 'HPP92_006628' => 'vpl', 'HPP92_006645' => 'vpl', 'HPP92_014669' => 'vpl', 'HPP92_015077' => 'vpl', 'Hund16742' => 'sun', 'Hund17022' => 'sun', 'Lalb_Chr02g0152131' => 'lal', 'Lalb_Chr05g0225371' => 'lal', 'Lalb_Chr07g0189841' => 'lal', 'Lalb_Chr07g0192961' => 'lal', 'Lalb_Chr12g0208221' => 'lal', 'Lalb_Chr13g0291211' => 'lal', 'Lalb_Chr13g0291781' => 'lal', 'Lalb_Chr18g0044651' => 'lal', 'Lalb_Chr21g0313731' => 'lal', 'Lj1g0022533' => 'lja', 'Lj2A18T50' => 'lonja', 'Lj2A92G93' => 'lonja', 'Lj3A965T73' => 'lonja', 'Lj3g0000673' => 'lja', 'Lj3g0002666' => 'lja', 'Lj4g0016985' => 'lja', 'Lj5g0003625' => 'lja', 'Lj7A529G36' => 'lonja', 'Lj9A569T49' => 'lonja', 'Lj9A604T63' => 'lonja', 'Lsat_1_v5_gn_3_132060' => 'lsa', 'Lsat_1_v5_gn_4_68941' => 'lsa', 'Lsat_1_v5_gn_5_95580' => 'lsa', 'Lsat_1_v5_gn_7_161' => 'lsa', 'Lsat_1_v5_gn_7_7041' => 'lsa', 'Lsat_1_v5_gn_9_33481' => 'lsa', 'Lsat_1_v5_gn_9_68260' => 'lsa', 'Manes.01G073100' => 'mes', 'Manes.01G266300' => 'mes', 'Manes.02G033300' => 'mes', 'Manes.05G017900' => 'mes', 'Manes.05G046100' => 'mes', 'Manes.08G080900' => 'mes', 'Manes.10G049400' => 'mes', 'Mapoly0009s0186' => 'mpo', 'Mapoly0036s0118' => 'mpo', 'Mapoly0101s0046' => 'mpo', 'MBI04_g30218_MAGBIO' => 'mbi', 'MBI04_g35564_MAGBIO' => 'mbi', 'MBI12_g34011_MAGBIO' => 'mbi', 'MBI14_g04655_MAGBIO' => 'mbi', 'MCO07G653' => 'mco', 'MCO10G173' => 'mco', 'MD01G1087100' => 'mdo', 'MD01G1104200' => 'mdo', 'MD02G1205100' => 'mdo', 'MD04G1079200' => 'mdo', 'MD04G1131400' => 'mdo', 'MD07G1121600' => 'mdo', 'MD07G1157300' => 'mdo', 'MD07G1171000' => 'mdo', 'MD12G1144500' => 'mdo', 'Medtr1g094610' => 'mtr', 'Medtr4g021795' => 'mtr', 'Medtr4g023760' => 'mtr', 'Medtr7g118050' => 'mtr', 'MELO3C005582.2' => 'cme', 'MELO3C005989.2' => 'cme', 'MELO3C006192.2' => 'cme', 'MELO3C009248.2' => 'cme', 'MELO3C019817.2' => 'cme', 'Migut.B01625' => 'egut', 'Migut.B01915' => 'egut', 'Migut.F01721' => 'egut', 'Migut.J00314' => 'egut', 'MSTRG.20742' => 'ama', 'MSTRG.8134' => 'ama', 'Nitab4.5_0000096g0010' => 'nta', 'Nitab4.5_0000202g0030' => 'nta', 'Nitab4.5_0000216g0370' => 'nta', 'Nitab4.5_0000457g0230' => 'nta', 'Nitab4.5_0001702g0170' => 'nta', 'Nitab4.5_0003607g0010' => 'nta', 'Nitab4.5_0004917g0020' => 'nta', 'Nitab4.5_0007059g0010' => 'nta', 'Nitab4.5_0007184g0010' => 'nta', 'Nitab4.5_0007346g0020' => 'nta', 'Nn1g00410' => 'nnu', 'Nn1g01252' => 'nnu', 'Nn2g11168' => 'nnu', 'Nn2g13403' => 'nnu', 'Nn2g13760' => 'nnu', 'Nn4g26380' => 'nnu', 'Oeu000806.2' => 'oeu', 'Oeu005788.1' => 'oeu', 'Oeu006900.3' => 'oeu', 'Oeu007797.1' => 'oeu', 'Oeu011932.1' => 'oeu', 'Oeu022739.1' => 'oeu', 'Oeu037918.1' => 'oeu', 'Oeu055490.2' => 'oeu', 'Os01g0844400' => 'osa', 'Os02g0819100' => 'osa', 'Os03g0804300' => 'osa', 'Os05g0458000' => 'osa', 'Os07g0467800' => 'osa', 'Os12g0602200' => 'osa', 'Peaxi162Scf00013g03444' => 'pax', 'Peaxi162Scf00094g01120' => 'pax', 'Peaxi162Scf00191g01211' => 'pax', 'Peaxi162Scf00238g01110' => 'pax', 'Peaxi162Scf00330g00719' => 'pax', 'Peaxi162Scf00627g00018' => 'pax', 'PGR031G2686' => 'pgr', 'PGR042G0809' => 'pgr', 'PGR142G0193' => 'pgr', 'PGSC0003DMG400011066' => 'stu', 'PGSC0003DMG400012041' => 'stu', 'PGSC0003DMG400013678' => 'stu', 'PGSC0003DMG400023477' => 'stu', 'PGSC0003DMG400025956' => 'stu', 'PGSC0003DMG401019151' => 'stu', 'Phvul.006G116400' => 'pvu', 'Phvul.007G097300' => 'pvu', 'Phvul.010G015000' => 'pvu', 'Phvul.010G083900' => 'pvu', 'Potri.001G117100' => 'ptr', 'Potri.002G147300' => 'ptr', 'Potri.003G115600' => 'ptr', 'Potri.006G087400' => 'ptr', 'Potri.010G226100' => 'ptr', 'Potri.014G069200' => 'ptr', 'Potri.014G104000' => 'ptr', 'Potri.016G100200' => 'ptr', 'Pp3c10_20450' => 'ppa', 'Pp3c1_42400' => 'ppa', 'Pp3c3_24390' => 'ppa', 'Pp3c3_2860' => 'ppa', 'PRCOL_00003193' => 'pco', 'Prupe.2G144500' => 'ppe', 'Prupe.2G195700' => 'ppe', 'Prupe.2G209800' => 'ppe', 'Prupe.5G080000' => 'ppe', 'Prupe.6G257900' => 'ppe', 'Psat3g001160' => 'psa', 'Psat6g181880' => 'psa', 'Psat7g233720' => 'psa', 'PSO063G7587' => 'pso', 'PSO339G2145' => 'pso', 'PSO339G3369' => 'pso', 'PSO478G2747' => 'pso', 'PSO513G0140' => 'pso', 'PSO782G1614' => 'pso', 'PSO782G4889' => 'pso', 'PSO782G5485' => 'pso', 'PSO801G0241' => 'pso', 'QL07p048854' => 'qlo', 'QL08p046745' => 'qlo', 'QL08p052606' => 'qlo', 'QL08p053414' => 'qlo', 'QL08p054868' => 'qlo', 'RcHm_v2.0_Chr1g0350251' => 'rch', 'RcHm_v2.0_Chr1g0360851' => 'rch', 'RcHm_v2.0_Chr1g0362791' => 'rch', 'RcHm_v2.0_Chr3g0466281' => 'rch', 'RcHm_v2.0_Chr7g0201481' => 'rch', 'Rhsim01G0148600' => 'rsi', 'Rhsim05G0194400' => 'rsi', 'Rhsim07G0000700' => 'rsi', 'Rhsim07G0000800' => 'rsi', 'Rhsim07G0027900' => 'rsi', 'Rhsim09G0149500' => 'rsi', 'RhsimUnG0186900' => 'rsi', 'Sabra01G0089900' => 'sbr', 'Sabra02G0114700' => 'sbr', 'Sabra02G0116300' => 'sbr', 'Sabra03G0080100' => 'sbr', 'Sabra08G0024300' => 'sbr', 'Sabra10G0174300' => 'sbr', 'Sabra14G0048900' => 'sbr', 'Sabra14G0076500' => 'sbr', 'SalBow5G2513' => 'sbo', 'Sc01g0002300' => 'sci', 'Sc01g0004450' => 'sci', 'Sc06g0001680' => 'sci', 'Sc23g0003580' => 'sci', 'Sed0000913' => 'sed', 'Sed0001655' => 'sed', 'Sed0007745' => 'sed', 'Sed0010951' => 'sed', 'Sed0017599' => 'sed', 'Sed0021405' => 'sed', 'Sed0022810' => 'sed', 'SEGI_07099' => 'sgi', 'SEGI_11931' => 'sgi', 'SEGI_13187' => 'sgi', 'SEGI_29958' => 'sgi', 'SEGI_36351' => 'sgi', 'SGA_v2.0_scaffold126G33770' => 'sas', 'SGA_v2.0_scaffold153G37003' => 'sas', 'SGA_v2.0_scaffold2G01359' => 'sas', 'SGA_v2.0_scaffold5G03064' => 'sas', 'SGA_v2.0_scaffold95G28903' => 'sas', 'SHI12701' => 'shi', 'SHI26410' => 'shi', 'SHI38997' => 'shi', 'SHI53759' => 'shi', 'SHI53886' => 'shi', 'SHI54714' => 'shi', 'SMO011G0041' => 'smo', 'SMO146G0251' => 'smo', 'SMO160G0004' => 'smo', 'SMO174G0057' => 'smo', 'SMO244G0089' => 'smo', 'SMO296G0011' => 'smo', 'Solyc01g091280.3' => 'sly', 'Solyc05g047610.3' => 'sly', 'Solyc05g047640.3' => 'sly', 'Solyc05g055630.3' => 'sly', 'Solyc10g018160.2' => 'sly', 'Solyc10g084820.2' => 'sly', 'Solyc10g086565.2' => 'sly', 'Sopen01g037030' => 'spe', 'Sopen05g027920' => 'spe', 'Sopen05g034070' => 'spe', 'Sopen10g007260' => 'spe', 'Sopen10g034260' => 'spe', 'Sopen10g035950' => 'spe', 'Sp3g07710' => 'spa', 'Sp4g27420' => 'spa', 'Sp5g02450' => 'spa', 'Sp6g01280' => 'spa', 'Sp6g38480' => 'spa', 'Sp7g20780' => 'spa', 'TAR374G1413' => 'tar', 'TAR623G1777' => 'tar', 'TAR629G2370' => 'tar', 'TAR633G1759' => 'tar', 'TAR636G3387' => 'tar', 'THA.LOC104802447' => 'tha', 'THA.LOC104813916' => 'tha', 'THA.LOC104816423' => 'tha', 'THA.LOC104817246' => 'tha', 'THA.LOC104825895' => 'tha', 'Thecc.01G335200' => 'tca', 'Thecc.01G377400' => 'tca', 'Thecc.03G262200' => 'tca', 'Thecc.05G036800' => 'tca', 'Thecc.10G080500' => 'tca', 'Thecc.10G080800' => 'tca', 'Thhalv10001560m.g' => 'esa', 'Thhalv10006120m.g' => 'esa', 'Thhalv10014375m.g' => 'esa', 'Thhalv10021264m.g' => 'esa', 'Thhalv10028856m.g' => 'esa', 'TPR.G1914' => 'tpr', 'TPR.G4757' => 'tpr', 'TPR.G5595' => 'tpr', 'TWI14G0952' => 'twi', 'TWI14G1307' => 'twi', 'TWI38G2143' => 'twi', 'TWI59G0826' => 'twi', 'TWI77G0527' => 'twi', 'TWI81G0150' => 'twi', 'unitig_21.g21018' => 'ugi', 'unitig_26.g9725' => 'ugi', 'unitig_744.g24653' => 'ugi', 'unitig_749.g13778' => 'ugi', 'unitig_899.g15035' => 'ugi', 'vmacro04296' => 'vma', 'vmacro04852' => 'vma', 'vmacro13404' => 'vma', 'vmacro20169' => 'vma', 'vmacro21014' => 'vma', 'VMungo0331G0237' => 'vmu', 'VMungo0331G0706' => 'vmu', 'VMungo0331G1361' => 'vmu', 'VMungo0331G1489' => 'vmu', 'VMungo0540G1037' => 'vmu', 'VMungo0720G2487' => 'vmu', 'VMungo0720G2721' => 'vmu', 'Zm00001eb086860' => 'zma', 'Zm00001eb104760' => 'zma', 'Zm00001eb148220' => 'zma', 'Zm00001eb259030' => 'zma', 'Zm00001eb289590' => 'zma', 'Zm00001eb420150' => 'zma' ) $gf_id = 'HOM05D000968' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000968' ) $data_identifier = 'HOM05D000968' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 19, 'bol' => (int) 9, 'bra' => (int) 12, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 5, 'ccan' => (int) 7, 'cde' => (int) 5, 'cfa' => (int) 8, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 4, 'dca' => (int) 5, 'din' => (int) 5, 'dzi' => (int) 12, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 25, 'fve' => (int) 5, 'gma' => (int) 9, 'ghi' => (int) 18, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 7, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 5, 'sun' => (int) 2, 'lal' => (int) 9, 'lja' => (int) 5, 'lonja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 9, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 2, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 3, 'stu' => (int) 6, 'pvu' => (int) 4, 'ptr' => (int) 8, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 3, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 1, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 5, 'sas' => (int) 5, 'shi' => (int) 6, 'smo' => (int) 6, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 3, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420150' $species_info = array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ) $local_species = 'fan' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000968', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p31690' => 'bna', 'A03p36040' => 'bna', 'A03p53730' => 'bna', 'A04p01410' => 'bna', 'A05p05420' => 'bna', 'A05p39630' => 'bna', 'A05p39640' => 'bna', 'A09p00970' => 'bna', 'A09p53060' => 'bna', 'A10p31890' => 'bna', 'Aa31LG10G15040' => 'aar', 'Aa31LG1G21090' => 'aar', 'Aa31LG1G26900' => 'aar', 'Aa31LG3G1820' => 'aar', 'Aa31LG5G1100' => 'aar', 'Aa31LG6G4740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2265' => 'aag', 'Actinidia07998' => 'ach', 'Actinidia11266' => 'ach', 'Actinidia12682' => 'ach', 'Actinidia26479' => 'ach', 'Actinidia31406' => 'ach', 'Actinidia32437' => 'ach', 'Actinidia38862' => 'ach', 'Ah.05g174230' => 'amhyb', 'Ah.05g179070' => 'amhyb', 'Ah.05g179090' => 'amhyb', 'Ah.12g059950' => 'amhyb', 'AL3G20480' => 'aly', 'AL4G44520' => 'aly', 'AL5G43110' => 'aly', 'AL6G13890' => 'aly', 'AL6G52620' => 'aly', 'AL7G30830' => 'aly', 'Aqoxy1G00899' => 'aox', 'Aqoxy5G04333' => 'aox', 'Aqoxy7G00641' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3IZ0NN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4EF6AW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W9P8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79GA3M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C43NQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFCU6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G95YVJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCHK29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LU1UG8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX91RN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGB4B1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8DA0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9H7JI' => 'arhy', 'AT3G09320' => 'ath', 'AT3G60800' => 'ath', 'AT4G00840' => 'ath', 'AT4G22750' => 'ath', 'AT5G04270' => 'ath', 'ATR0090G003' => 'atr', 'ATR0559G349' => 'atr', 'ATR0680G261' => 'atr', 'ATR0810G048' => 'atr', 'Atru.chr12.831' => 'acertr', 'Atru.chr5.303' => 'acertr', 'Atru.chr5.748' => 'acertr', 'Atru.chr8.1999' => 'acertr', 'Atru.chr9.1436' => 'acertr', 'AUR62004211' => 'cqu', 'AUR62004548' => 'cqu', 'AUR62013637' => 'cqu', 'AUR62022662' => 'cqu', 'AUR62025777' => 'cqu', 'AUR62042386' => 'cqu', 'BcaB01g02310' => 'bca', 'BcaB01g06062' => 'bca', 'BcaB02g08975' => 'bca', 'BcaB02g08980' => 'bca', 'BcaC01g04228' => 'bca', 'BcaC01g06830' => 'bca', 'BcaC02g10186' => 'bca', 'BcaC02g12214' => 'bca', 'BcaC04g24101' => 'bca', 'BcaC05g29520' => 'bca', 'BcaC05g29661' => 'bca', 'BcaC06g32130' => 'bca', 'BcaC06g32131' => 'bca', 'BcaC07g40601' => 'bca', 'BcaC07g42641' => 'bca', 'BcaNung01038' => 'bca', 'BcaNung01676' => 'bca', 'BcaNung02480' => 'bca', 'BcaNung07376' => 'bca', 'BolC3t16146H' => 'bol', 'BolC3t16637H' => 'bol', 'BolC4t22257H' => 'bol', 'BolC4t24728H' => 'bol', 'BolC5t34517H' => 'bol', 'BolC7t45703H' => 'bol', 'BolC8t51166H' => 'bol', 'BolC9t53038H' => 'bol', 'BolC9t60000H' => 'bol', 'BraA01t01345Z' => 'bra', 'BraA01t01346Z' => 'bra', 'BraA01t01348Z' => 'bra', 'BraA03t12347Z' => 'bra', 'BraA03t12775Z' => 'bra', 'BraA03t14439Z' => 'bra', 'BraA04t15860Z' => 'bra', 'BraA05t19511Z' => 'bra', 'BraA05t22746Z' => 'bra', 'BraA09t35767Z' => 'bra', 'BraA09t40732Z' => 'bra', 'BraA10t45233Z' => 'bra', 'C03p38720' => 'bna', 'C03p43680' => 'bna', 'C04p06350' => 'bna', 'C04p31800' => 'bna', 'C05p58680' => 'bna', 'C07p52110' => 'bna', 'C08p35760' => 'bna', 'C09p01050' => 'bna', 'C09p72600' => 'bna', 'CAN.G106.2' => 'can', 'CAN.G1482.1' => 'can', 'CAN.G324.12' => 'can', 'CAN.G388.20' => 'can', 'CAN.G412.7' => 'can', 'CAN.G694.32' => 'can', 'CAN.G92.12' => 'can', 'CANSAT11G2353' => 'cansat', 'CANSAT21G1398' => 'cansat', 'CANSAT56G2456' => 'cansat', 'CANSAT56G3031' => 'cansat', 'CANSAT56G4539' => 'cansat', 'CARHR083680' => 'chi', 'CARHR171190' => 'chi', 'CARHR209010' => 'chi', 'CARHR229680' => 'chi', 'CARHR249490' => 'chi', 'Carub.0003s0844' => 'cru', 'Carub.0005s2755' => 'cru', 'Carub.0006s0322' => 'cru', 'Carub.0006s3586' => 'cru', 'Carub.0007s1855' => 'cru', 'Ca_07808_v3' => 'car', 'Ca_09535_v3' => 'car', 'Ca_10548_v3' => 'car', 'Ca_19913_v3' => 'car', 'Ca_19916_v3' => 'car', 'Ca_19975_v3' => 'car', 'CBR_g22876' => 'cbr', 'CBR_g22879' => 'cbr', 'CBR_g38491' => 'cbr', 'CBR_g54185' => 'cbr', 'CBR_g54190' => 'cbr', 'Cc02_g11020' => 'ccan', 'Cc02_g23920' => 'ccan', 'Cc02_g39860' => 'ccan', 'Cc02_g39870' => 'ccan', 'Cc03_g06760' => 'ccan', 'Cc06_g02450' => 'ccan', 'Cc09_g09450' => 'ccan', 'CDE02G1959' => 'cde', 'CDE04G0600' => 'cde', 'CDE07G1996' => 'cde', 'CDE07G2078' => 'cde', 'CDE11G0611' => 'cde', 'Cfa001683' => 'cfa', 'Cfa001734' => 'cfa', 'Cfa001737' => 'cfa', 'Cfa003751' => 'cfa', 'Cfa012019' => 'cfa', 'Cfa017353' => 'cfa', 'Cfa017732' => 'cfa', 'Cfa022464' => 'cfa', 'Ciclev10012400m.g' => 'ccl', 'Ciclev10021242m.g' => 'ccl', 'Ciclev10021302m.g' => 'ccl', 'Ciclev10021463m.g' => 'ccl', 'Ciclev10032359m.g' => 'ccl', 'CiPaw.01G081000' => 'cil', 'CiPaw.01G262500' => 'cil', 'CiPaw.01G269800' => 'cil', 'CiPaw.02G168400' => 'cil', 'CiPaw.05G119500' => 'cil', 'CiPaw.11G147300' => 'cil', 'ClCG01G003630' => 'cla', 'ClCG05G000510' => 'cla', 'ClCG05G002300' => 'cla', 'ClCG08G007650' => 'cla', 'ClCG10G021250' => 'cla', 'COL.COLO4_06218' => 'col', 'COL.COLO4_12538' => 'col', 'COL.COLO4_14775' => 'col', 'COL.COLO4_23875' => 'col', 'Cpa.g.sc141.16' => 'cpa', 'Cpa.g.sc169.16' => 'cpa', 'Cpa.g.sc244.4' => 'cpa', 'Cpa.g.sc244.5' => 'cpa', 'Cpa.g.sc29.87' => 'cpa', 'Cpa.g.sc53.115' => 'cpa', 'Cre03.g207502' => 'cre', 'Cre06.g277000' => 'cre', 'Cre09.g394050' => 'cre', 'CsaV3_3G007680' => 'csa', 'CsaV3_3G009710' => 'csa', 'CsaV3_3G034790' => 'csa', 'CsaV3_5G003750' => 'csa', 'CsaV3_6G036620' => 'csa', 'CSS0002288' => 'camsi', 'CSS0011250' => 'camsi', 'CSS0021619' => 'camsi', 'CSS0046701' => 'camsi', 'DCAR_006420' => 'dca', 'DCAR_006865' => 'dca', 'DCAR_008558' => 'dca', 'DCAR_028754' => 'dca', 'DCAR_028755' => 'dca', 'Dinv31218' => 'din', 'Dinv32371' => 'din', 'Dinv34250' => 'din', 'Dinv37156' => 'din', 'Dinv43704' => 'din', 'Duzib093G1811' => 'dzi', 'Duzib106G1622' => 'dzi', 'Duzib114G0504' => 'dzi', 'Duzib128G0338' => 'dzi', 'Duzib128G1577' => 'dzi', 'Duzib133G0104' => 'dzi', 'Duzib133G1080' => 'dzi', 'Duzib138G0324' => 'dzi', 'Duzib138G0394' => 'dzi', 'Duzib205G0122' => 'dzi', 'Duzib268G1020' => 'dzi', 'Duzib268G1359' => 'dzi', 'ECA232G3929' => 'eca', 'ECA236G2210' => 'eca', 'ECA236G2287' => 'eca', 'ECA240G4568' => 'eca', 'ECA247G0894' => 'eca', 'EL10Ac1g00200' => 'bvu', 'EL10Ac1g00886' => 'bvu', 'EL10As1g23091' => 'bvu', 'EL10As1g23092' => 'bvu', 'Eucgr.A01284' => 'egr', 'Eucgr.A01285' => 'egr', 'Eucgr.D02456' => 'egr', 'Eucgr.E00018' => 'egr', 'Eucgr.E01439' => 'egr', 'Eucgr.G02859' => 'egr', 'FAN01G0168' => 'fan', 'FAN01G0453' => 'fan', 'FAN01G2761' => 'fan', 'FAN02G1239' => 'fan', 'FAN03G0645' => 'fan', 'FAN03G2707' => 'fan', 'FAN03G2978' => 'fan', 'FAN04G0227' => 'fan', 'FAN06G0091' => 'fan', 'FAN06G1418' => 'fan', 'FAN06G1512' => 'fan', 'FAN06G1986' => 'fan', 'FAN06G2905' => 'fan', 'FAN06G4325' => 'fan', 'FAN08G0033' => 'fan', 'FAN09G0642' => 'fan', 'FAN10G1763' => 'fan', 'FAN10G2026' => 'fan', 'FAN10G2513' => 'fan', 'FAN10G3402' => 'fan', 'FAN10G3564' => 'fan', 'FAN10G3987' => 'fan', 'FAN13G1490' => 'fan', 'FAN14G5857' => 'fan', 'FAN18G1188' => 'fan', 'FvH4_5g00750' => 'fve', 'FvH4_6g13410' => 'fve', 'FvH4_7g11740' => 'fve', 'FvH4_7g17410' => 'fve', 'FvH4_7g18860' => 'fve', 'Glyma.01G099100' => 'gma', 'Glyma.01G142300' => 'gma', 'Glyma.03G025500' => 'gma', 'Glyma.03G069700' => 'gma', 'Glyma.03G260000' => 'gma', 'Glyma.09G269800' => 'gma', 'Glyma.10G208700' => 'gma', 'Glyma.18G220400' => 'gma', 'Glyma.20G182000' => 'gma', 'Gohir.A01G221726' => 'ghi', 'Gohir.A07G134600' => 'ghi', 'Gohir.A07G146000' => 'ghi', 'Gohir.A08G173900' => 'ghi', 'Gohir.A09G194900' => 'ghi', 'Gohir.A10G204100' => 'ghi', 'Gohir.A11G080600' => 'ghi', 'Gohir.A11G327500' => 'ghi', 'Gohir.A12G101800' => 'ghi', 'Gohir.D01G211200' => 'ghi', 'Gohir.D07G139200' => 'ghi', 'Gohir.D07G152100' => 'ghi', 'Gohir.D08G192600' => 'ghi', 'Gohir.D09G189200' => 'ghi', 'Gohir.D10G212000' => 'ghi', 'Gohir.D11G085200' => 'ghi', 'Gohir.D11G346400' => 'ghi', 'Gohir.D12G104800' => 'ghi', 'Gorai.001G151300' => 'gra', 'Gorai.001G174100' => 'gra', 'Gorai.002G257000' => 'gra', 'Gorai.004G202600' => 'gra', 'Gorai.007G090900' => 'gra', 'Gorai.007G376700' => 'gra', 'Gorai.008G114100' => 'gra', 'Gorai.011G237900' => 'gra', 'GSVIVG01005450001' => 'vvi', 'GSVIVG01016232001' => 'vvi', 'GSVIVG01026157001' => 'vvi', 'GSVIVG01027419001' => 'vvi', 'GSVIVG01027631001' => 'vvi', 'GSVIVG01034143001' => 'vvi', 'HanXRQChr03g0093921' => 'han', 'HanXRQChr04g0120001' => 'han', 'HanXRQChr04g0122561' => 'han', 'HanXRQChr09g0246851' => 'han', 'HanXRQChr10g0293311' => 'han', 'HanXRQChr13g0425231' => 'han', 'HanXRQChr16g0532571' => 'han', 'Haze_09050' => 'cav', 'Haze_15715' => 'cav', 'Haze_15716' => 'cav', 'Haze_16803' => 'cav', 'Haze_16850' => 'cav', 'Hma1.2p1_0301F.1_g118655' => 'hma', 'Hma1.2p1_0309F.1_g120590' => 'hma', 'Hma1.2p1_0936F.1_g238900' => 'hma', 'Hma1.2p1_3552F.1_g336740' => 'hma', 'HPP92_003520' => 'vpl', 'HPP92_006628' => 'vpl', 'HPP92_006645' => 'vpl', 'HPP92_014669' => 'vpl', 'HPP92_015077' => 'vpl', 'Hund16742' => 'sun', 'Hund17022' => 'sun', 'Lalb_Chr02g0152131' => 'lal', 'Lalb_Chr05g0225371' => 'lal', 'Lalb_Chr07g0189841' => 'lal', 'Lalb_Chr07g0192961' => 'lal', 'Lalb_Chr12g0208221' => 'lal', 'Lalb_Chr13g0291211' => 'lal', 'Lalb_Chr13g0291781' => 'lal', 'Lalb_Chr18g0044651' => 'lal', 'Lalb_Chr21g0313731' => 'lal', 'Lj1g0022533' => 'lja', 'Lj2A18T50' => 'lonja', 'Lj2A92G93' => 'lonja', 'Lj3A965T73' => 'lonja', 'Lj3g0000673' => 'lja', 'Lj3g0002666' => 'lja', 'Lj4g0016985' => 'lja', 'Lj5g0003625' => 'lja', 'Lj7A529G36' => 'lonja', 'Lj9A569T49' => 'lonja', 'Lj9A604T63' => 'lonja', 'Lsat_1_v5_gn_3_132060' => 'lsa', 'Lsat_1_v5_gn_4_68941' => 'lsa', 'Lsat_1_v5_gn_5_95580' => 'lsa', 'Lsat_1_v5_gn_7_161' => 'lsa', 'Lsat_1_v5_gn_7_7041' => 'lsa', 'Lsat_1_v5_gn_9_33481' => 'lsa', 'Lsat_1_v5_gn_9_68260' => 'lsa', 'Manes.01G073100' => 'mes', 'Manes.01G266300' => 'mes', 'Manes.02G033300' => 'mes', 'Manes.05G017900' => 'mes', 'Manes.05G046100' => 'mes', 'Manes.08G080900' => 'mes', 'Manes.10G049400' => 'mes', 'Mapoly0009s0186' => 'mpo', 'Mapoly0036s0118' => 'mpo', 'Mapoly0101s0046' => 'mpo', 'MBI04_g30218_MAGBIO' => 'mbi', 'MBI04_g35564_MAGBIO' => 'mbi', 'MBI12_g34011_MAGBIO' => 'mbi', 'MBI14_g04655_MAGBIO' => 'mbi', 'MCO07G653' => 'mco', 'MCO10G173' => 'mco', 'MD01G1087100' => 'mdo', 'MD01G1104200' => 'mdo', 'MD02G1205100' => 'mdo', 'MD04G1079200' => 'mdo', 'MD04G1131400' => 'mdo', 'MD07G1121600' => 'mdo', 'MD07G1157300' => 'mdo', 'MD07G1171000' => 'mdo', 'MD12G1144500' => 'mdo', 'Medtr1g094610' => 'mtr', 'Medtr4g021795' => 'mtr', 'Medtr4g023760' => 'mtr', 'Medtr7g118050' => 'mtr', 'MELO3C005582.2' => 'cme', 'MELO3C005989.2' => 'cme', 'MELO3C006192.2' => 'cme', 'MELO3C009248.2' => 'cme', 'MELO3C019817.2' => 'cme', 'Migut.B01625' => 'egut', 'Migut.B01915' => 'egut', 'Migut.F01721' => 'egut', 'Migut.J00314' => 'egut', 'MSTRG.20742' => 'ama', 'MSTRG.8134' => 'ama', 'Nitab4.5_0000096g0010' => 'nta', 'Nitab4.5_0000202g0030' => 'nta', 'Nitab4.5_0000216g0370' => 'nta', 'Nitab4.5_0000457g0230' => 'nta', 'Nitab4.5_0001702g0170' => 'nta', 'Nitab4.5_0003607g0010' => 'nta', 'Nitab4.5_0004917g0020' => 'nta', 'Nitab4.5_0007059g0010' => 'nta', 'Nitab4.5_0007184g0010' => 'nta', 'Nitab4.5_0007346g0020' => 'nta', 'Nn1g00410' => 'nnu', 'Nn1g01252' => 'nnu', 'Nn2g11168' => 'nnu', 'Nn2g13403' => 'nnu', 'Nn2g13760' => 'nnu', 'Nn4g26380' => 'nnu', 'Oeu000806.2' => 'oeu', 'Oeu005788.1' => 'oeu', 'Oeu006900.3' => 'oeu', 'Oeu007797.1' => 'oeu', 'Oeu011932.1' => 'oeu', 'Oeu022739.1' => 'oeu', 'Oeu037918.1' => 'oeu', 'Oeu055490.2' => 'oeu', 'Os01g0844400' => 'osa', 'Os02g0819100' => 'osa', 'Os03g0804300' => 'osa', 'Os05g0458000' => 'osa', 'Os07g0467800' => 'osa', 'Os12g0602200' => 'osa', 'Peaxi162Scf00013g03444' => 'pax', 'Peaxi162Scf00094g01120' => 'pax', 'Peaxi162Scf00191g01211' => 'pax', 'Peaxi162Scf00238g01110' => 'pax', 'Peaxi162Scf00330g00719' => 'pax', 'Peaxi162Scf00627g00018' => 'pax', 'PGR031G2686' => 'pgr', 'PGR042G0809' => 'pgr', 'PGR142G0193' => 'pgr', 'PGSC0003DMG400011066' => 'stu', 'PGSC0003DMG400012041' => 'stu', 'PGSC0003DMG400013678' => 'stu', 'PGSC0003DMG400023477' => 'stu', 'PGSC0003DMG400025956' => 'stu', 'PGSC0003DMG401019151' => 'stu', 'Phvul.006G116400' => 'pvu', 'Phvul.007G097300' => 'pvu', 'Phvul.010G015000' => 'pvu', 'Phvul.010G083900' => 'pvu', 'Potri.001G117100' => 'ptr', 'Potri.002G147300' => 'ptr', 'Potri.003G115600' => 'ptr', 'Potri.006G087400' => 'ptr', 'Potri.010G226100' => 'ptr', 'Potri.014G069200' => 'ptr', 'Potri.014G104000' => 'ptr', 'Potri.016G100200' => 'ptr', 'Pp3c10_20450' => 'ppa', 'Pp3c1_42400' => 'ppa', 'Pp3c3_24390' => 'ppa', 'Pp3c3_2860' => 'ppa', 'PRCOL_00003193' => 'pco', 'Prupe.2G144500' => 'ppe', 'Prupe.2G195700' => 'ppe', 'Prupe.2G209800' => 'ppe', 'Prupe.5G080000' => 'ppe', 'Prupe.6G257900' => 'ppe', 'Psat3g001160' => 'psa', 'Psat6g181880' => 'psa', 'Psat7g233720' => 'psa', 'PSO063G7587' => 'pso', 'PSO339G2145' => 'pso', 'PSO339G3369' => 'pso', 'PSO478G2747' => 'pso', 'PSO513G0140' => 'pso', 'PSO782G1614' => 'pso', 'PSO782G4889' => 'pso', 'PSO782G5485' => 'pso', 'PSO801G0241' => 'pso', 'QL07p048854' => 'qlo', 'QL08p046745' => 'qlo', 'QL08p052606' => 'qlo', 'QL08p053414' => 'qlo', 'QL08p054868' => 'qlo', 'RcHm_v2.0_Chr1g0350251' => 'rch', 'RcHm_v2.0_Chr1g0360851' => 'rch', 'RcHm_v2.0_Chr1g0362791' => 'rch', 'RcHm_v2.0_Chr3g0466281' => 'rch', 'RcHm_v2.0_Chr7g0201481' => 'rch', 'Rhsim01G0148600' => 'rsi', 'Rhsim05G0194400' => 'rsi', 'Rhsim07G0000700' => 'rsi', 'Rhsim07G0000800' => 'rsi', 'Rhsim07G0027900' => 'rsi', 'Rhsim09G0149500' => 'rsi', 'RhsimUnG0186900' => 'rsi', 'Sabra01G0089900' => 'sbr', 'Sabra02G0114700' => 'sbr', 'Sabra02G0116300' => 'sbr', 'Sabra03G0080100' => 'sbr', 'Sabra08G0024300' => 'sbr', 'Sabra10G0174300' => 'sbr', 'Sabra14G0048900' => 'sbr', 'Sabra14G0076500' => 'sbr', 'SalBow5G2513' => 'sbo', 'Sc01g0002300' => 'sci', 'Sc01g0004450' => 'sci', 'Sc06g0001680' => 'sci', 'Sc23g0003580' => 'sci', 'Sed0000913' => 'sed', 'Sed0001655' => 'sed', 'Sed0007745' => 'sed', 'Sed0010951' => 'sed', 'Sed0017599' => 'sed', 'Sed0021405' => 'sed', 'Sed0022810' => 'sed', 'SEGI_07099' => 'sgi', 'SEGI_11931' => 'sgi', 'SEGI_13187' => 'sgi', 'SEGI_29958' => 'sgi', 'SEGI_36351' => 'sgi', 'SGA_v2.0_scaffold126G33770' => 'sas', 'SGA_v2.0_scaffold153G37003' => 'sas', 'SGA_v2.0_scaffold2G01359' => 'sas', 'SGA_v2.0_scaffold5G03064' => 'sas', 'SGA_v2.0_scaffold95G28903' => 'sas', 'SHI12701' => 'shi', 'SHI26410' => 'shi', 'SHI38997' => 'shi', 'SHI53759' => 'shi', 'SHI53886' => 'shi', 'SHI54714' => 'shi', 'SMO011G0041' => 'smo', 'SMO146G0251' => 'smo', 'SMO160G0004' => 'smo', 'SMO174G0057' => 'smo', 'SMO244G0089' => 'smo', 'SMO296G0011' => 'smo', 'Solyc01g091280.3' => 'sly', 'Solyc05g047610.3' => 'sly', 'Solyc05g047640.3' => 'sly', 'Solyc05g055630.3' => 'sly', 'Solyc10g018160.2' => 'sly', 'Solyc10g084820.2' => 'sly', 'Solyc10g086565.2' => 'sly', 'Sopen01g037030' => 'spe', 'Sopen05g027920' => 'spe', 'Sopen05g034070' => 'spe', 'Sopen10g007260' => 'spe', 'Sopen10g034260' => 'spe', 'Sopen10g035950' => 'spe', 'Sp3g07710' => 'spa', 'Sp4g27420' => 'spa', 'Sp5g02450' => 'spa', 'Sp6g01280' => 'spa', 'Sp6g38480' => 'spa', 'Sp7g20780' => 'spa', 'TAR374G1413' => 'tar', 'TAR623G1777' => 'tar', 'TAR629G2370' => 'tar', 'TAR633G1759' => 'tar', 'TAR636G3387' => 'tar', 'THA.LOC104802447' => 'tha', 'THA.LOC104813916' => 'tha', 'THA.LOC104816423' => 'tha', 'THA.LOC104817246' => 'tha', 'THA.LOC104825895' => 'tha', 'Thecc.01G335200' => 'tca', 'Thecc.01G377400' => 'tca', 'Thecc.03G262200' => 'tca', 'Thecc.05G036800' => 'tca', 'Thecc.10G080500' => 'tca', 'Thecc.10G080800' => 'tca', 'Thhalv10001560m.g' => 'esa', 'Thhalv10006120m.g' => 'esa', 'Thhalv10014375m.g' => 'esa', 'Thhalv10021264m.g' => 'esa', 'Thhalv10028856m.g' => 'esa', 'TPR.G1914' => 'tpr', 'TPR.G4757' => 'tpr', 'TPR.G5595' => 'tpr', 'TWI14G0952' => 'twi', 'TWI14G1307' => 'twi', 'TWI38G2143' => 'twi', 'TWI59G0826' => 'twi', 'TWI77G0527' => 'twi', 'TWI81G0150' => 'twi', 'unitig_21.g21018' => 'ugi', 'unitig_26.g9725' => 'ugi', 'unitig_744.g24653' => 'ugi', 'unitig_749.g13778' => 'ugi', 'unitig_899.g15035' => 'ugi', 'vmacro04296' => 'vma', 'vmacro04852' => 'vma', 'vmacro13404' => 'vma', 'vmacro20169' => 'vma', 'vmacro21014' => 'vma', 'VMungo0331G0237' => 'vmu', 'VMungo0331G0706' => 'vmu', 'VMungo0331G1361' => 'vmu', 'VMungo0331G1489' => 'vmu', 'VMungo0540G1037' => 'vmu', 'VMungo0720G2487' => 'vmu', 'VMungo0720G2721' => 'vmu', 'Zm00001eb086860' => 'zma', 'Zm00001eb104760' => 'zma', 'Zm00001eb148220' => 'zma', 'Zm00001eb259030' => 'zma', 'Zm00001eb289590' => 'zma', 'Zm00001eb420150' => 'zma' ), 'gf_id' => 'HOM05D000968', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000968' ), 'data_identifier' => 'HOM05D000968', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000968', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p31690' => 'bna', 'A03p36040' => 'bna', 'A03p53730' => 'bna', 'A04p01410' => 'bna', 'A05p05420' => 'bna', 'A05p39630' => 'bna', 'A05p39640' => 'bna', 'A09p00970' => 'bna', 'A09p53060' => 'bna', 'A10p31890' => 'bna', 'Aa31LG10G15040' => 'aar', 'Aa31LG1G21090' => 'aar', 'Aa31LG1G26900' => 'aar', 'Aa31LG3G1820' => 'aar', 'Aa31LG5G1100' => 'aar', 'Aa31LG6G4740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2265' => 'aag', 'Actinidia07998' => 'ach', 'Actinidia11266' => 'ach', 'Actinidia12682' => 'ach', 'Actinidia26479' => 'ach', 'Actinidia31406' => 'ach', 'Actinidia32437' => 'ach', 'Actinidia38862' => 'ach', 'Ah.05g174230' => 'amhyb', 'Ah.05g179070' => 'amhyb', 'Ah.05g179090' => 'amhyb', 'Ah.12g059950' => 'amhyb', 'AL3G20480' => 'aly', 'AL4G44520' => 'aly', 'AL5G43110' => 'aly', 'AL6G13890' => 'aly', 'AL6G52620' => 'aly', 'AL7G30830' => 'aly', 'Aqoxy1G00899' => 'aox', 'Aqoxy5G04333' => 'aox', 'Aqoxy7G00641' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3IZ0NN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4EF6AW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W9P8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79GA3M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C43NQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFCU6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G95YVJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCHK29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LU1UG8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX91RN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGB4B1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8DA0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9H7JI' => 'arhy', 'AT3G09320' => 'ath', 'AT3G60800' => 'ath', 'AT4G00840' => 'ath', 'AT4G22750' => 'ath', 'AT5G04270' => 'ath', 'ATR0090G003' => 'atr', 'ATR0559G349' => 'atr', 'ATR0680G261' => 'atr', 'ATR0810G048' => 'atr', 'Atru.chr12.831' => 'acertr', 'Atru.chr5.303' => 'acertr', 'Atru.chr5.748' => 'acertr', 'Atru.chr8.1999' => 'acertr', 'Atru.chr9.1436' => 'acertr', 'AUR62004211' => 'cqu', 'AUR62004548' => 'cqu', 'AUR62013637' => 'cqu', 'AUR62022662' => 'cqu', 'AUR62025777' => 'cqu', 'AUR62042386' => 'cqu', 'BcaB01g02310' => 'bca', 'BcaB01g06062' => 'bca', 'BcaB02g08975' => 'bca', 'BcaB02g08980' => 'bca', 'BcaC01g04228' => 'bca', 'BcaC01g06830' => 'bca', 'BcaC02g10186' => 'bca', 'BcaC02g12214' => 'bca', 'BcaC04g24101' => 'bca', 'BcaC05g29520' => 'bca', 'BcaC05g29661' => 'bca', 'BcaC06g32130' => 'bca', 'BcaC06g32131' => 'bca', 'BcaC07g40601' => 'bca', 'BcaC07g42641' => 'bca', 'BcaNung01038' => 'bca', 'BcaNung01676' => 'bca', 'BcaNung02480' => 'bca', 'BcaNung07376' => 'bca', 'BolC3t16146H' => 'bol', 'BolC3t16637H' => 'bol', 'BolC4t22257H' => 'bol', 'BolC4t24728H' => 'bol', 'BolC5t34517H' => 'bol', 'BolC7t45703H' => 'bol', 'BolC8t51166H' => 'bol', 'BolC9t53038H' => 'bol', 'BolC9t60000H' => 'bol', 'BraA01t01345Z' => 'bra', 'BraA01t01346Z' => 'bra', 'BraA01t01348Z' => 'bra', 'BraA03t12347Z' => 'bra', 'BraA03t12775Z' => 'bra', 'BraA03t14439Z' => 'bra', 'BraA04t15860Z' => 'bra', 'BraA05t19511Z' => 'bra', 'BraA05t22746Z' => 'bra', 'BraA09t35767Z' => 'bra', 'BraA09t40732Z' => 'bra', 'BraA10t45233Z' => 'bra', 'C03p38720' => 'bna', 'C03p43680' => 'bna', 'C04p06350' => 'bna', 'C04p31800' => 'bna', 'C05p58680' => 'bna', 'C07p52110' => 'bna', 'C08p35760' => 'bna', 'C09p01050' => 'bna', 'C09p72600' => 'bna', 'CAN.G106.2' => 'can', 'CAN.G1482.1' => 'can', 'CAN.G324.12' => 'can', 'CAN.G388.20' => 'can', 'CAN.G412.7' => 'can', 'CAN.G694.32' => 'can', 'CAN.G92.12' => 'can', 'CANSAT11G2353' => 'cansat', 'CANSAT21G1398' => 'cansat', 'CANSAT56G2456' => 'cansat', 'CANSAT56G3031' => 'cansat', 'CANSAT56G4539' => 'cansat', 'CARHR083680' => 'chi', 'CARHR171190' => 'chi', 'CARHR209010' => 'chi', 'CARHR229680' => 'chi', 'CARHR249490' => 'chi', 'Carub.0003s0844' => 'cru', 'Carub.0005s2755' => 'cru', 'Carub.0006s0322' => 'cru', 'Carub.0006s3586' => 'cru', 'Carub.0007s1855' => 'cru', 'Ca_07808_v3' => 'car', 'Ca_09535_v3' => 'car', 'Ca_10548_v3' => 'car', 'Ca_19913_v3' => 'car', 'Ca_19916_v3' => 'car', 'Ca_19975_v3' => 'car', 'CBR_g22876' => 'cbr', 'CBR_g22879' => 'cbr', 'CBR_g38491' => 'cbr', 'CBR_g54185' => 'cbr', 'CBR_g54190' => 'cbr', 'Cc02_g11020' => 'ccan', 'Cc02_g23920' => 'ccan', 'Cc02_g39860' => 'ccan', 'Cc02_g39870' => 'ccan', 'Cc03_g06760' => 'ccan', 'Cc06_g02450' => 'ccan', 'Cc09_g09450' => 'ccan', 'CDE02G1959' => 'cde', 'CDE04G0600' => 'cde', 'CDE07G1996' => 'cde', 'CDE07G2078' => 'cde', 'CDE11G0611' => 'cde', 'Cfa001683' => 'cfa', 'Cfa001734' => 'cfa', 'Cfa001737' => 'cfa', 'Cfa003751' => 'cfa', 'Cfa012019' => 'cfa', 'Cfa017353' => 'cfa', 'Cfa017732' => 'cfa', 'Cfa022464' => 'cfa', 'Ciclev10012400m.g' => 'ccl', 'Ciclev10021242m.g' => 'ccl', 'Ciclev10021302m.g' => 'ccl', 'Ciclev10021463m.g' => 'ccl', 'Ciclev10032359m.g' => 'ccl', 'CiPaw.01G081000' => 'cil', 'CiPaw.01G262500' => 'cil', 'CiPaw.01G269800' => 'cil', 'CiPaw.02G168400' => 'cil', 'CiPaw.05G119500' => 'cil', 'CiPaw.11G147300' => 'cil', 'ClCG01G003630' => 'cla', 'ClCG05G000510' => 'cla', 'ClCG05G002300' => 'cla', 'ClCG08G007650' => 'cla', 'ClCG10G021250' => 'cla', 'COL.COLO4_06218' => 'col', 'COL.COLO4_12538' => 'col', 'COL.COLO4_14775' => 'col', 'COL.COLO4_23875' => 'col', 'Cpa.g.sc141.16' => 'cpa', 'Cpa.g.sc169.16' => 'cpa', 'Cpa.g.sc244.4' => 'cpa', 'Cpa.g.sc244.5' => 'cpa', 'Cpa.g.sc29.87' => 'cpa', 'Cpa.g.sc53.115' => 'cpa', 'Cre03.g207502' => 'cre', 'Cre06.g277000' => 'cre', 'Cre09.g394050' => 'cre', 'CsaV3_3G007680' => 'csa', 'CsaV3_3G009710' => 'csa', 'CsaV3_3G034790' => 'csa', 'CsaV3_5G003750' => 'csa', 'CsaV3_6G036620' => 'csa', 'CSS0002288' => 'camsi', 'CSS0011250' => 'camsi', 'CSS0021619' => 'camsi', 'CSS0046701' => 'camsi', 'DCAR_006420' => 'dca', 'DCAR_006865' => 'dca', 'DCAR_008558' => 'dca', 'DCAR_028754' => 'dca', 'DCAR_028755' => 'dca', 'Dinv31218' => 'din', 'Dinv32371' => 'din', 'Dinv34250' => 'din', 'Dinv37156' => 'din', 'Dinv43704' => 'din', 'Duzib093G1811' => 'dzi', 'Duzib106G1622' => 'dzi', 'Duzib114G0504' => 'dzi', 'Duzib128G0338' => 'dzi', 'Duzib128G1577' => 'dzi', 'Duzib133G0104' => 'dzi', 'Duzib133G1080' => 'dzi', 'Duzib138G0324' => 'dzi', 'Duzib138G0394' => 'dzi', 'Duzib205G0122' => 'dzi', 'Duzib268G1020' => 'dzi', 'Duzib268G1359' => 'dzi', 'ECA232G3929' => 'eca', 'ECA236G2210' => 'eca', 'ECA236G2287' => 'eca', 'ECA240G4568' => 'eca', 'ECA247G0894' => 'eca', 'EL10Ac1g00200' => 'bvu', 'EL10Ac1g00886' => 'bvu', 'EL10As1g23091' => 'bvu', 'EL10As1g23092' => 'bvu', 'Eucgr.A01284' => 'egr', 'Eucgr.A01285' => 'egr', 'Eucgr.D02456' => 'egr', 'Eucgr.E00018' => 'egr', 'Eucgr.E01439' => 'egr', 'Eucgr.G02859' => 'egr', 'FAN01G0168' => 'fan', 'FAN01G0453' => 'fan', 'FAN01G2761' => 'fan', 'FAN02G1239' => 'fan', 'FAN03G0645' => 'fan', 'FAN03G2707' => 'fan', 'FAN03G2978' => 'fan', 'FAN04G0227' => 'fan', 'FAN06G0091' => 'fan', 'FAN06G1418' => 'fan', 'FAN06G1512' => 'fan', 'FAN06G1986' => 'fan', 'FAN06G2905' => 'fan', 'FAN06G4325' => 'fan', 'FAN08G0033' => 'fan', 'FAN09G0642' => 'fan', 'FAN10G1763' => 'fan', 'FAN10G2026' => 'fan', 'FAN10G2513' => 'fan', 'FAN10G3402' => 'fan', 'FAN10G3564' => 'fan', 'FAN10G3987' => 'fan', 'FAN13G1490' => 'fan', 'FAN14G5857' => 'fan', 'FAN18G1188' => 'fan', 'FvH4_5g00750' => 'fve', 'FvH4_6g13410' => 'fve', 'FvH4_7g11740' => 'fve', 'FvH4_7g17410' => 'fve', 'FvH4_7g18860' => 'fve', 'Glyma.01G099100' => 'gma', 'Glyma.01G142300' => 'gma', 'Glyma.03G025500' => 'gma', 'Glyma.03G069700' => 'gma', 'Glyma.03G260000' => 'gma', 'Glyma.09G269800' => 'gma', 'Glyma.10G208700' => 'gma', 'Glyma.18G220400' => 'gma', 'Glyma.20G182000' => 'gma', 'Gohir.A01G221726' => 'ghi', 'Gohir.A07G134600' => 'ghi', 'Gohir.A07G146000' => 'ghi', 'Gohir.A08G173900' => 'ghi', 'Gohir.A09G194900' => 'ghi', 'Gohir.A10G204100' => 'ghi', 'Gohir.A11G080600' => 'ghi', 'Gohir.A11G327500' => 'ghi', 'Gohir.A12G101800' => 'ghi', 'Gohir.D01G211200' => 'ghi', 'Gohir.D07G139200' => 'ghi', 'Gohir.D07G152100' => 'ghi', 'Gohir.D08G192600' => 'ghi', 'Gohir.D09G189200' => 'ghi', 'Gohir.D10G212000' => 'ghi', 'Gohir.D11G085200' => 'ghi', 'Gohir.D11G346400' => 'ghi', 'Gohir.D12G104800' => 'ghi', 'Gorai.001G151300' => 'gra', 'Gorai.001G174100' => 'gra', 'Gorai.002G257000' => 'gra', 'Gorai.004G202600' => 'gra', 'Gorai.007G090900' => 'gra', 'Gorai.007G376700' => 'gra', 'Gorai.008G114100' => 'gra', 'Gorai.011G237900' => 'gra', 'GSVIVG01005450001' => 'vvi', 'GSVIVG01016232001' => 'vvi', 'GSVIVG01026157001' => 'vvi', 'GSVIVG01027419001' => 'vvi', 'GSVIVG01027631001' => 'vvi', 'GSVIVG01034143001' => 'vvi', 'HanXRQChr03g0093921' => 'han', 'HanXRQChr04g0120001' => 'han', 'HanXRQChr04g0122561' => 'han', 'HanXRQChr09g0246851' => 'han', 'HanXRQChr10g0293311' => 'han', 'HanXRQChr13g0425231' => 'han', 'HanXRQChr16g0532571' => 'han', 'Haze_09050' => 'cav', 'Haze_15715' => 'cav', 'Haze_15716' => 'cav', 'Haze_16803' => 'cav', 'Haze_16850' => 'cav', 'Hma1.2p1_0301F.1_g118655' => 'hma', 'Hma1.2p1_0309F.1_g120590' => 'hma', 'Hma1.2p1_0936F.1_g238900' => 'hma', 'Hma1.2p1_3552F.1_g336740' => 'hma', 'HPP92_003520' => 'vpl', 'HPP92_006628' => 'vpl', 'HPP92_006645' => 'vpl', 'HPP92_014669' => 'vpl', 'HPP92_015077' => 'vpl', 'Hund16742' => 'sun', 'Hund17022' => 'sun', 'Lalb_Chr02g0152131' => 'lal', 'Lalb_Chr05g0225371' => 'lal', 'Lalb_Chr07g0189841' => 'lal', 'Lalb_Chr07g0192961' => 'lal', 'Lalb_Chr12g0208221' => 'lal', 'Lalb_Chr13g0291211' => 'lal', 'Lalb_Chr13g0291781' => 'lal', 'Lalb_Chr18g0044651' => 'lal', 'Lalb_Chr21g0313731' => 'lal', 'Lj1g0022533' => 'lja', 'Lj2A18T50' => 'lonja', 'Lj2A92G93' => 'lonja', 'Lj3A965T73' => 'lonja', 'Lj3g0000673' => 'lja', 'Lj3g0002666' => 'lja', 'Lj4g0016985' => 'lja', 'Lj5g0003625' => 'lja', 'Lj7A529G36' => 'lonja', 'Lj9A569T49' => 'lonja', 'Lj9A604T63' => 'lonja', 'Lsat_1_v5_gn_3_132060' => 'lsa', 'Lsat_1_v5_gn_4_68941' => 'lsa', 'Lsat_1_v5_gn_5_95580' => 'lsa', 'Lsat_1_v5_gn_7_161' => 'lsa', 'Lsat_1_v5_gn_7_7041' => 'lsa', 'Lsat_1_v5_gn_9_33481' => 'lsa', 'Lsat_1_v5_gn_9_68260' => 'lsa', 'Manes.01G073100' => 'mes', 'Manes.01G266300' => 'mes', 'Manes.02G033300' => 'mes', 'Manes.05G017900' => 'mes', 'Manes.05G046100' => 'mes', 'Manes.08G080900' => 'mes', 'Manes.10G049400' => 'mes', 'Mapoly0009s0186' => 'mpo', 'Mapoly0036s0118' => 'mpo', 'Mapoly0101s0046' => 'mpo', 'MBI04_g30218_MAGBIO' => 'mbi', 'MBI04_g35564_MAGBIO' => 'mbi', 'MBI12_g34011_MAGBIO' => 'mbi', 'MBI14_g04655_MAGBIO' => 'mbi', 'MCO07G653' => 'mco', 'MCO10G173' => 'mco', 'MD01G1087100' => 'mdo', 'MD01G1104200' => 'mdo', 'MD02G1205100' => 'mdo', 'MD04G1079200' => 'mdo', 'MD04G1131400' => 'mdo', 'MD07G1121600' => 'mdo', 'MD07G1157300' => 'mdo', 'MD07G1171000' => 'mdo', 'MD12G1144500' => 'mdo', 'Medtr1g094610' => 'mtr', 'Medtr4g021795' => 'mtr', 'Medtr4g023760' => 'mtr', 'Medtr7g118050' => 'mtr', 'MELO3C005582.2' => 'cme', 'MELO3C005989.2' => 'cme', 'MELO3C006192.2' => 'cme', 'MELO3C009248.2' => 'cme', 'MELO3C019817.2' => 'cme', 'Migut.B01625' => 'egut', 'Migut.B01915' => 'egut', 'Migut.F01721' => 'egut', 'Migut.J00314' => 'egut', 'MSTRG.20742' => 'ama', 'MSTRG.8134' => 'ama', 'Nitab4.5_0000096g0010' => 'nta', 'Nitab4.5_0000202g0030' => 'nta', 'Nitab4.5_0000216g0370' => 'nta', 'Nitab4.5_0000457g0230' => 'nta', 'Nitab4.5_0001702g0170' => 'nta', 'Nitab4.5_0003607g0010' => 'nta', 'Nitab4.5_0004917g0020' => 'nta', 'Nitab4.5_0007059g0010' => 'nta', 'Nitab4.5_0007184g0010' => 'nta', 'Nitab4.5_0007346g0020' => 'nta', 'Nn1g00410' => 'nnu', 'Nn1g01252' => 'nnu', 'Nn2g11168' => 'nnu', 'Nn2g13403' => 'nnu', 'Nn2g13760' => 'nnu', 'Nn4g26380' => 'nnu', 'Oeu000806.2' => 'oeu', 'Oeu005788.1' => 'oeu', 'Oeu006900.3' => 'oeu', 'Oeu007797.1' => 'oeu', 'Oeu011932.1' => 'oeu', 'Oeu022739.1' => 'oeu', 'Oeu037918.1' => 'oeu', 'Oeu055490.2' => 'oeu', 'Os01g0844400' => 'osa', 'Os02g0819100' => 'osa', 'Os03g0804300' => 'osa', 'Os05g0458000' => 'osa', 'Os07g0467800' => 'osa', 'Os12g0602200' => 'osa', 'Peaxi162Scf00013g03444' => 'pax', 'Peaxi162Scf00094g01120' => 'pax', 'Peaxi162Scf00191g01211' => 'pax', 'Peaxi162Scf00238g01110' => 'pax', 'Peaxi162Scf00330g00719' => 'pax', 'Peaxi162Scf00627g00018' => 'pax', 'PGR031G2686' => 'pgr', 'PGR042G0809' => 'pgr', 'PGR142G0193' => 'pgr', 'PGSC0003DMG400011066' => 'stu', 'PGSC0003DMG400012041' => 'stu', 'PGSC0003DMG400013678' => 'stu', 'PGSC0003DMG400023477' => 'stu', 'PGSC0003DMG400025956' => 'stu', 'PGSC0003DMG401019151' => 'stu', 'Phvul.006G116400' => 'pvu', 'Phvul.007G097300' => 'pvu', 'Phvul.010G015000' => 'pvu', 'Phvul.010G083900' => 'pvu', 'Potri.001G117100' => 'ptr', 'Potri.002G147300' => 'ptr', 'Potri.003G115600' => 'ptr', 'Potri.006G087400' => 'ptr', 'Potri.010G226100' => 'ptr', 'Potri.014G069200' => 'ptr', 'Potri.014G104000' => 'ptr', 'Potri.016G100200' => 'ptr', 'Pp3c10_20450' => 'ppa', 'Pp3c1_42400' => 'ppa', 'Pp3c3_24390' => 'ppa', 'Pp3c3_2860' => 'ppa', 'PRCOL_00003193' => 'pco', 'Prupe.2G144500' => 'ppe', 'Prupe.2G195700' => 'ppe', 'Prupe.2G209800' => 'ppe', 'Prupe.5G080000' => 'ppe', 'Prupe.6G257900' => 'ppe', 'Psat3g001160' => 'psa', 'Psat6g181880' => 'psa', 'Psat7g233720' => 'psa', 'PSO063G7587' => 'pso', 'PSO339G2145' => 'pso', 'PSO339G3369' => 'pso', 'PSO478G2747' => 'pso', 'PSO513G0140' => 'pso', 'PSO782G1614' => 'pso', 'PSO782G4889' => 'pso', 'PSO782G5485' => 'pso', 'PSO801G0241' => 'pso', 'QL07p048854' => 'qlo', 'QL08p046745' => 'qlo', 'QL08p052606' => 'qlo', 'QL08p053414' => 'qlo', 'QL08p054868' => 'qlo', 'RcHm_v2.0_Chr1g0350251' => 'rch', 'RcHm_v2.0_Chr1g0360851' => 'rch', 'RcHm_v2.0_Chr1g0362791' => 'rch', 'RcHm_v2.0_Chr3g0466281' => 'rch', 'RcHm_v2.0_Chr7g0201481' => 'rch', 'Rhsim01G0148600' => 'rsi', 'Rhsim05G0194400' => 'rsi', 'Rhsim07G0000700' => 'rsi', 'Rhsim07G0000800' => 'rsi', 'Rhsim07G0027900' => 'rsi', 'Rhsim09G0149500' => 'rsi', 'RhsimUnG0186900' => 'rsi', 'Sabra01G0089900' => 'sbr', 'Sabra02G0114700' => 'sbr', 'Sabra02G0116300' => 'sbr', 'Sabra03G0080100' => 'sbr', 'Sabra08G0024300' => 'sbr', 'Sabra10G0174300' => 'sbr', 'Sabra14G0048900' => 'sbr', 'Sabra14G0076500' => 'sbr', 'SalBow5G2513' => 'sbo', 'Sc01g0002300' => 'sci', 'Sc01g0004450' => 'sci', 'Sc06g0001680' => 'sci', 'Sc23g0003580' => 'sci', 'Sed0000913' => 'sed', 'Sed0001655' => 'sed', 'Sed0007745' => 'sed', 'Sed0010951' => 'sed', 'Sed0017599' => 'sed', 'Sed0021405' => 'sed', 'Sed0022810' => 'sed', 'SEGI_07099' => 'sgi', 'SEGI_11931' => 'sgi', 'SEGI_13187' => 'sgi', 'SEGI_29958' => 'sgi', 'SEGI_36351' => 'sgi', 'SGA_v2.0_scaffold126G33770' => 'sas', 'SGA_v2.0_scaffold153G37003' => 'sas', 'SGA_v2.0_scaffold2G01359' => 'sas', 'SGA_v2.0_scaffold5G03064' => 'sas', 'SGA_v2.0_scaffold95G28903' => 'sas', 'SHI12701' => 'shi', 'SHI26410' => 'shi', 'SHI38997' => 'shi', 'SHI53759' => 'shi', 'SHI53886' => 'shi', 'SHI54714' => 'shi', 'SMO011G0041' => 'smo', 'SMO146G0251' => 'smo', 'SMO160G0004' => 'smo', 'SMO174G0057' => 'smo', 'SMO244G0089' => 'smo', 'SMO296G0011' => 'smo', 'Solyc01g091280.3' => 'sly', 'Solyc05g047610.3' => 'sly', 'Solyc05g047640.3' => 'sly', 'Solyc05g055630.3' => 'sly', 'Solyc10g018160.2' => 'sly', 'Solyc10g084820.2' => 'sly', 'Solyc10g086565.2' => 'sly', 'Sopen01g037030' => 'spe', 'Sopen05g027920' => 'spe', 'Sopen05g034070' => 'spe', 'Sopen10g007260' => 'spe', 'Sopen10g034260' => 'spe', 'Sopen10g035950' => 'spe', 'Sp3g07710' => 'spa', 'Sp4g27420' => 'spa', 'Sp5g02450' => 'spa', 'Sp6g01280' => 'spa', 'Sp6g38480' => 'spa', 'Sp7g20780' => 'spa', 'TAR374G1413' => 'tar', 'TAR623G1777' => 'tar', 'TAR629G2370' => 'tar', 'TAR633G1759' => 'tar', 'TAR636G3387' => 'tar', 'THA.LOC104802447' => 'tha', 'THA.LOC104813916' => 'tha', 'THA.LOC104816423' => 'tha', 'THA.LOC104817246' => 'tha', 'THA.LOC104825895' => 'tha', 'Thecc.01G335200' => 'tca', 'Thecc.01G377400' => 'tca', 'Thecc.03G262200' => 'tca', 'Thecc.05G036800' => 'tca', 'Thecc.10G080500' => 'tca', 'Thecc.10G080800' => 'tca', 'Thhalv10001560m.g' => 'esa', 'Thhalv10006120m.g' => 'esa', 'Thhalv10014375m.g' => 'esa', 'Thhalv10021264m.g' => 'esa', 'Thhalv10028856m.g' => 'esa', 'TPR.G1914' => 'tpr', 'TPR.G4757' => 'tpr', 'TPR.G5595' => 'tpr', 'TWI14G0952' => 'twi', 'TWI14G1307' => 'twi', 'TWI38G2143' => 'twi', 'TWI59G0826' => 'twi', 'TWI77G0527' => 'twi', 'TWI81G0150' => 'twi', 'unitig_21.g21018' => 'ugi', 'unitig_26.g9725' => 'ugi', 'unitig_744.g24653' => 'ugi', 'unitig_749.g13778' => 'ugi', 'unitig_899.g15035' => 'ugi', 'vmacro04296' => 'vma', 'vmacro04852' => 'vma', 'vmacro13404' => 'vma', 'vmacro20169' => 'vma', 'vmacro21014' => 'vma', 'VMungo0331G0237' => 'vmu', 'VMungo0331G0706' => 'vmu', 'VMungo0331G1361' => 'vmu', 'VMungo0331G1489' => 'vmu', 'VMungo0540G1037' => 'vmu', 'VMungo0720G2487' => 'vmu', 'VMungo0720G2721' => 'vmu', 'Zm00001eb086860' => 'zma', 'Zm00001eb104760' => 'zma', 'Zm00001eb148220' => 'zma', 'Zm00001eb259030' => 'zma', 'Zm00001eb289590' => 'zma', 'Zm00001eb420150' => 'zma' ) $gf_id = 'HOM05D000968' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000968' ) $data_identifier = 'HOM05D000968' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 19, 'bol' => (int) 9, 'bra' => (int) 12, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 5, 'ccan' => (int) 7, 'cde' => (int) 5, 'cfa' => (int) 8, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 4, 'dca' => (int) 5, 'din' => (int) 5, 'dzi' => (int) 12, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 25, 'fve' => (int) 5, 'gma' => (int) 9, 'ghi' => (int) 18, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 7, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 5, 'sun' => (int) 2, 'lal' => (int) 9, 'lja' => (int) 5, 'lonja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 9, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 2, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 3, 'stu' => (int) 6, 'pvu' => (int) 4, 'ptr' => (int) 8, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 3, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 1, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 5, 'sas' => (int) 5, 'shi' => (int) 6, 'smo' => (int) 6, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 3, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420150' $species_info = array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ) $local_species = 'gma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000968', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p31690' => 'bna', 'A03p36040' => 'bna', 'A03p53730' => 'bna', 'A04p01410' => 'bna', 'A05p05420' => 'bna', 'A05p39630' => 'bna', 'A05p39640' => 'bna', 'A09p00970' => 'bna', 'A09p53060' => 'bna', 'A10p31890' => 'bna', 'Aa31LG10G15040' => 'aar', 'Aa31LG1G21090' => 'aar', 'Aa31LG1G26900' => 'aar', 'Aa31LG3G1820' => 'aar', 'Aa31LG5G1100' => 'aar', 'Aa31LG6G4740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2265' => 'aag', 'Actinidia07998' => 'ach', 'Actinidia11266' => 'ach', 'Actinidia12682' => 'ach', 'Actinidia26479' => 'ach', 'Actinidia31406' => 'ach', 'Actinidia32437' => 'ach', 'Actinidia38862' => 'ach', 'Ah.05g174230' => 'amhyb', 'Ah.05g179070' => 'amhyb', 'Ah.05g179090' => 'amhyb', 'Ah.12g059950' => 'amhyb', 'AL3G20480' => 'aly', 'AL4G44520' => 'aly', 'AL5G43110' => 'aly', 'AL6G13890' => 'aly', 'AL6G52620' => 'aly', 'AL7G30830' => 'aly', 'Aqoxy1G00899' => 'aox', 'Aqoxy5G04333' => 'aox', 'Aqoxy7G00641' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3IZ0NN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4EF6AW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W9P8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79GA3M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C43NQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFCU6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G95YVJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCHK29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LU1UG8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX91RN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGB4B1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8DA0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9H7JI' => 'arhy', 'AT3G09320' => 'ath', 'AT3G60800' => 'ath', 'AT4G00840' => 'ath', 'AT4G22750' => 'ath', 'AT5G04270' => 'ath', 'ATR0090G003' => 'atr', 'ATR0559G349' => 'atr', 'ATR0680G261' => 'atr', 'ATR0810G048' => 'atr', 'Atru.chr12.831' => 'acertr', 'Atru.chr5.303' => 'acertr', 'Atru.chr5.748' => 'acertr', 'Atru.chr8.1999' => 'acertr', 'Atru.chr9.1436' => 'acertr', 'AUR62004211' => 'cqu', 'AUR62004548' => 'cqu', 'AUR62013637' => 'cqu', 'AUR62022662' => 'cqu', 'AUR62025777' => 'cqu', 'AUR62042386' => 'cqu', 'BcaB01g02310' => 'bca', 'BcaB01g06062' => 'bca', 'BcaB02g08975' => 'bca', 'BcaB02g08980' => 'bca', 'BcaC01g04228' => 'bca', 'BcaC01g06830' => 'bca', 'BcaC02g10186' => 'bca', 'BcaC02g12214' => 'bca', 'BcaC04g24101' => 'bca', 'BcaC05g29520' => 'bca', 'BcaC05g29661' => 'bca', 'BcaC06g32130' => 'bca', 'BcaC06g32131' => 'bca', 'BcaC07g40601' => 'bca', 'BcaC07g42641' => 'bca', 'BcaNung01038' => 'bca', 'BcaNung01676' => 'bca', 'BcaNung02480' => 'bca', 'BcaNung07376' => 'bca', 'BolC3t16146H' => 'bol', 'BolC3t16637H' => 'bol', 'BolC4t22257H' => 'bol', 'BolC4t24728H' => 'bol', 'BolC5t34517H' => 'bol', 'BolC7t45703H' => 'bol', 'BolC8t51166H' => 'bol', 'BolC9t53038H' => 'bol', 'BolC9t60000H' => 'bol', 'BraA01t01345Z' => 'bra', 'BraA01t01346Z' => 'bra', 'BraA01t01348Z' => 'bra', 'BraA03t12347Z' => 'bra', 'BraA03t12775Z' => 'bra', 'BraA03t14439Z' => 'bra', 'BraA04t15860Z' => 'bra', 'BraA05t19511Z' => 'bra', 'BraA05t22746Z' => 'bra', 'BraA09t35767Z' => 'bra', 'BraA09t40732Z' => 'bra', 'BraA10t45233Z' => 'bra', 'C03p38720' => 'bna', 'C03p43680' => 'bna', 'C04p06350' => 'bna', 'C04p31800' => 'bna', 'C05p58680' => 'bna', 'C07p52110' => 'bna', 'C08p35760' => 'bna', 'C09p01050' => 'bna', 'C09p72600' => 'bna', 'CAN.G106.2' => 'can', 'CAN.G1482.1' => 'can', 'CAN.G324.12' => 'can', 'CAN.G388.20' => 'can', 'CAN.G412.7' => 'can', 'CAN.G694.32' => 'can', 'CAN.G92.12' => 'can', 'CANSAT11G2353' => 'cansat', 'CANSAT21G1398' => 'cansat', 'CANSAT56G2456' => 'cansat', 'CANSAT56G3031' => 'cansat', 'CANSAT56G4539' => 'cansat', 'CARHR083680' => 'chi', 'CARHR171190' => 'chi', 'CARHR209010' => 'chi', 'CARHR229680' => 'chi', 'CARHR249490' => 'chi', 'Carub.0003s0844' => 'cru', 'Carub.0005s2755' => 'cru', 'Carub.0006s0322' => 'cru', 'Carub.0006s3586' => 'cru', 'Carub.0007s1855' => 'cru', 'Ca_07808_v3' => 'car', 'Ca_09535_v3' => 'car', 'Ca_10548_v3' => 'car', 'Ca_19913_v3' => 'car', 'Ca_19916_v3' => 'car', 'Ca_19975_v3' => 'car', 'CBR_g22876' => 'cbr', 'CBR_g22879' => 'cbr', 'CBR_g38491' => 'cbr', 'CBR_g54185' => 'cbr', 'CBR_g54190' => 'cbr', 'Cc02_g11020' => 'ccan', 'Cc02_g23920' => 'ccan', 'Cc02_g39860' => 'ccan', 'Cc02_g39870' => 'ccan', 'Cc03_g06760' => 'ccan', 'Cc06_g02450' => 'ccan', 'Cc09_g09450' => 'ccan', 'CDE02G1959' => 'cde', 'CDE04G0600' => 'cde', 'CDE07G1996' => 'cde', 'CDE07G2078' => 'cde', 'CDE11G0611' => 'cde', 'Cfa001683' => 'cfa', 'Cfa001734' => 'cfa', 'Cfa001737' => 'cfa', 'Cfa003751' => 'cfa', 'Cfa012019' => 'cfa', 'Cfa017353' => 'cfa', 'Cfa017732' => 'cfa', 'Cfa022464' => 'cfa', 'Ciclev10012400m.g' => 'ccl', 'Ciclev10021242m.g' => 'ccl', 'Ciclev10021302m.g' => 'ccl', 'Ciclev10021463m.g' => 'ccl', 'Ciclev10032359m.g' => 'ccl', 'CiPaw.01G081000' => 'cil', 'CiPaw.01G262500' => 'cil', 'CiPaw.01G269800' => 'cil', 'CiPaw.02G168400' => 'cil', 'CiPaw.05G119500' => 'cil', 'CiPaw.11G147300' => 'cil', 'ClCG01G003630' => 'cla', 'ClCG05G000510' => 'cla', 'ClCG05G002300' => 'cla', 'ClCG08G007650' => 'cla', 'ClCG10G021250' => 'cla', 'COL.COLO4_06218' => 'col', 'COL.COLO4_12538' => 'col', 'COL.COLO4_14775' => 'col', 'COL.COLO4_23875' => 'col', 'Cpa.g.sc141.16' => 'cpa', 'Cpa.g.sc169.16' => 'cpa', 'Cpa.g.sc244.4' => 'cpa', 'Cpa.g.sc244.5' => 'cpa', 'Cpa.g.sc29.87' => 'cpa', 'Cpa.g.sc53.115' => 'cpa', 'Cre03.g207502' => 'cre', 'Cre06.g277000' => 'cre', 'Cre09.g394050' => 'cre', 'CsaV3_3G007680' => 'csa', 'CsaV3_3G009710' => 'csa', 'CsaV3_3G034790' => 'csa', 'CsaV3_5G003750' => 'csa', 'CsaV3_6G036620' => 'csa', 'CSS0002288' => 'camsi', 'CSS0011250' => 'camsi', 'CSS0021619' => 'camsi', 'CSS0046701' => 'camsi', 'DCAR_006420' => 'dca', 'DCAR_006865' => 'dca', 'DCAR_008558' => 'dca', 'DCAR_028754' => 'dca', 'DCAR_028755' => 'dca', 'Dinv31218' => 'din', 'Dinv32371' => 'din', 'Dinv34250' => 'din', 'Dinv37156' => 'din', 'Dinv43704' => 'din', 'Duzib093G1811' => 'dzi', 'Duzib106G1622' => 'dzi', 'Duzib114G0504' => 'dzi', 'Duzib128G0338' => 'dzi', 'Duzib128G1577' => 'dzi', 'Duzib133G0104' => 'dzi', 'Duzib133G1080' => 'dzi', 'Duzib138G0324' => 'dzi', 'Duzib138G0394' => 'dzi', 'Duzib205G0122' => 'dzi', 'Duzib268G1020' => 'dzi', 'Duzib268G1359' => 'dzi', 'ECA232G3929' => 'eca', 'ECA236G2210' => 'eca', 'ECA236G2287' => 'eca', 'ECA240G4568' => 'eca', 'ECA247G0894' => 'eca', 'EL10Ac1g00200' => 'bvu', 'EL10Ac1g00886' => 'bvu', 'EL10As1g23091' => 'bvu', 'EL10As1g23092' => 'bvu', 'Eucgr.A01284' => 'egr', 'Eucgr.A01285' => 'egr', 'Eucgr.D02456' => 'egr', 'Eucgr.E00018' => 'egr', 'Eucgr.E01439' => 'egr', 'Eucgr.G02859' => 'egr', 'FAN01G0168' => 'fan', 'FAN01G0453' => 'fan', 'FAN01G2761' => 'fan', 'FAN02G1239' => 'fan', 'FAN03G0645' => 'fan', 'FAN03G2707' => 'fan', 'FAN03G2978' => 'fan', 'FAN04G0227' => 'fan', 'FAN06G0091' => 'fan', 'FAN06G1418' => 'fan', 'FAN06G1512' => 'fan', 'FAN06G1986' => 'fan', 'FAN06G2905' => 'fan', 'FAN06G4325' => 'fan', 'FAN08G0033' => 'fan', 'FAN09G0642' => 'fan', 'FAN10G1763' => 'fan', 'FAN10G2026' => 'fan', 'FAN10G2513' => 'fan', 'FAN10G3402' => 'fan', 'FAN10G3564' => 'fan', 'FAN10G3987' => 'fan', 'FAN13G1490' => 'fan', 'FAN14G5857' => 'fan', 'FAN18G1188' => 'fan', 'FvH4_5g00750' => 'fve', 'FvH4_6g13410' => 'fve', 'FvH4_7g11740' => 'fve', 'FvH4_7g17410' => 'fve', 'FvH4_7g18860' => 'fve', 'Glyma.01G099100' => 'gma', 'Glyma.01G142300' => 'gma', 'Glyma.03G025500' => 'gma', 'Glyma.03G069700' => 'gma', 'Glyma.03G260000' => 'gma', 'Glyma.09G269800' => 'gma', 'Glyma.10G208700' => 'gma', 'Glyma.18G220400' => 'gma', 'Glyma.20G182000' => 'gma', 'Gohir.A01G221726' => 'ghi', 'Gohir.A07G134600' => 'ghi', 'Gohir.A07G146000' => 'ghi', 'Gohir.A08G173900' => 'ghi', 'Gohir.A09G194900' => 'ghi', 'Gohir.A10G204100' => 'ghi', 'Gohir.A11G080600' => 'ghi', 'Gohir.A11G327500' => 'ghi', 'Gohir.A12G101800' => 'ghi', 'Gohir.D01G211200' => 'ghi', 'Gohir.D07G139200' => 'ghi', 'Gohir.D07G152100' => 'ghi', 'Gohir.D08G192600' => 'ghi', 'Gohir.D09G189200' => 'ghi', 'Gohir.D10G212000' => 'ghi', 'Gohir.D11G085200' => 'ghi', 'Gohir.D11G346400' => 'ghi', 'Gohir.D12G104800' => 'ghi', 'Gorai.001G151300' => 'gra', 'Gorai.001G174100' => 'gra', 'Gorai.002G257000' => 'gra', 'Gorai.004G202600' => 'gra', 'Gorai.007G090900' => 'gra', 'Gorai.007G376700' => 'gra', 'Gorai.008G114100' => 'gra', 'Gorai.011G237900' => 'gra', 'GSVIVG01005450001' => 'vvi', 'GSVIVG01016232001' => 'vvi', 'GSVIVG01026157001' => 'vvi', 'GSVIVG01027419001' => 'vvi', 'GSVIVG01027631001' => 'vvi', 'GSVIVG01034143001' => 'vvi', 'HanXRQChr03g0093921' => 'han', 'HanXRQChr04g0120001' => 'han', 'HanXRQChr04g0122561' => 'han', 'HanXRQChr09g0246851' => 'han', 'HanXRQChr10g0293311' => 'han', 'HanXRQChr13g0425231' => 'han', 'HanXRQChr16g0532571' => 'han', 'Haze_09050' => 'cav', 'Haze_15715' => 'cav', 'Haze_15716' => 'cav', 'Haze_16803' => 'cav', 'Haze_16850' => 'cav', 'Hma1.2p1_0301F.1_g118655' => 'hma', 'Hma1.2p1_0309F.1_g120590' => 'hma', 'Hma1.2p1_0936F.1_g238900' => 'hma', 'Hma1.2p1_3552F.1_g336740' => 'hma', 'HPP92_003520' => 'vpl', 'HPP92_006628' => 'vpl', 'HPP92_006645' => 'vpl', 'HPP92_014669' => 'vpl', 'HPP92_015077' => 'vpl', 'Hund16742' => 'sun', 'Hund17022' => 'sun', 'Lalb_Chr02g0152131' => 'lal', 'Lalb_Chr05g0225371' => 'lal', 'Lalb_Chr07g0189841' => 'lal', 'Lalb_Chr07g0192961' => 'lal', 'Lalb_Chr12g0208221' => 'lal', 'Lalb_Chr13g0291211' => 'lal', 'Lalb_Chr13g0291781' => 'lal', 'Lalb_Chr18g0044651' => 'lal', 'Lalb_Chr21g0313731' => 'lal', 'Lj1g0022533' => 'lja', 'Lj2A18T50' => 'lonja', 'Lj2A92G93' => 'lonja', 'Lj3A965T73' => 'lonja', 'Lj3g0000673' => 'lja', 'Lj3g0002666' => 'lja', 'Lj4g0016985' => 'lja', 'Lj5g0003625' => 'lja', 'Lj7A529G36' => 'lonja', 'Lj9A569T49' => 'lonja', 'Lj9A604T63' => 'lonja', 'Lsat_1_v5_gn_3_132060' => 'lsa', 'Lsat_1_v5_gn_4_68941' => 'lsa', 'Lsat_1_v5_gn_5_95580' => 'lsa', 'Lsat_1_v5_gn_7_161' => 'lsa', 'Lsat_1_v5_gn_7_7041' => 'lsa', 'Lsat_1_v5_gn_9_33481' => 'lsa', 'Lsat_1_v5_gn_9_68260' => 'lsa', 'Manes.01G073100' => 'mes', 'Manes.01G266300' => 'mes', 'Manes.02G033300' => 'mes', 'Manes.05G017900' => 'mes', 'Manes.05G046100' => 'mes', 'Manes.08G080900' => 'mes', 'Manes.10G049400' => 'mes', 'Mapoly0009s0186' => 'mpo', 'Mapoly0036s0118' => 'mpo', 'Mapoly0101s0046' => 'mpo', 'MBI04_g30218_MAGBIO' => 'mbi', 'MBI04_g35564_MAGBIO' => 'mbi', 'MBI12_g34011_MAGBIO' => 'mbi', 'MBI14_g04655_MAGBIO' => 'mbi', 'MCO07G653' => 'mco', 'MCO10G173' => 'mco', 'MD01G1087100' => 'mdo', 'MD01G1104200' => 'mdo', 'MD02G1205100' => 'mdo', 'MD04G1079200' => 'mdo', 'MD04G1131400' => 'mdo', 'MD07G1121600' => 'mdo', 'MD07G1157300' => 'mdo', 'MD07G1171000' => 'mdo', 'MD12G1144500' => 'mdo', 'Medtr1g094610' => 'mtr', 'Medtr4g021795' => 'mtr', 'Medtr4g023760' => 'mtr', 'Medtr7g118050' => 'mtr', 'MELO3C005582.2' => 'cme', 'MELO3C005989.2' => 'cme', 'MELO3C006192.2' => 'cme', 'MELO3C009248.2' => 'cme', 'MELO3C019817.2' => 'cme', 'Migut.B01625' => 'egut', 'Migut.B01915' => 'egut', 'Migut.F01721' => 'egut', 'Migut.J00314' => 'egut', 'MSTRG.20742' => 'ama', 'MSTRG.8134' => 'ama', 'Nitab4.5_0000096g0010' => 'nta', 'Nitab4.5_0000202g0030' => 'nta', 'Nitab4.5_0000216g0370' => 'nta', 'Nitab4.5_0000457g0230' => 'nta', 'Nitab4.5_0001702g0170' => 'nta', 'Nitab4.5_0003607g0010' => 'nta', 'Nitab4.5_0004917g0020' => 'nta', 'Nitab4.5_0007059g0010' => 'nta', 'Nitab4.5_0007184g0010' => 'nta', 'Nitab4.5_0007346g0020' => 'nta', 'Nn1g00410' => 'nnu', 'Nn1g01252' => 'nnu', 'Nn2g11168' => 'nnu', 'Nn2g13403' => 'nnu', 'Nn2g13760' => 'nnu', 'Nn4g26380' => 'nnu', 'Oeu000806.2' => 'oeu', 'Oeu005788.1' => 'oeu', 'Oeu006900.3' => 'oeu', 'Oeu007797.1' => 'oeu', 'Oeu011932.1' => 'oeu', 'Oeu022739.1' => 'oeu', 'Oeu037918.1' => 'oeu', 'Oeu055490.2' => 'oeu', 'Os01g0844400' => 'osa', 'Os02g0819100' => 'osa', 'Os03g0804300' => 'osa', 'Os05g0458000' => 'osa', 'Os07g0467800' => 'osa', 'Os12g0602200' => 'osa', 'Peaxi162Scf00013g03444' => 'pax', 'Peaxi162Scf00094g01120' => 'pax', 'Peaxi162Scf00191g01211' => 'pax', 'Peaxi162Scf00238g01110' => 'pax', 'Peaxi162Scf00330g00719' => 'pax', 'Peaxi162Scf00627g00018' => 'pax', 'PGR031G2686' => 'pgr', 'PGR042G0809' => 'pgr', 'PGR142G0193' => 'pgr', 'PGSC0003DMG400011066' => 'stu', 'PGSC0003DMG400012041' => 'stu', 'PGSC0003DMG400013678' => 'stu', 'PGSC0003DMG400023477' => 'stu', 'PGSC0003DMG400025956' => 'stu', 'PGSC0003DMG401019151' => 'stu', 'Phvul.006G116400' => 'pvu', 'Phvul.007G097300' => 'pvu', 'Phvul.010G015000' => 'pvu', 'Phvul.010G083900' => 'pvu', 'Potri.001G117100' => 'ptr', 'Potri.002G147300' => 'ptr', 'Potri.003G115600' => 'ptr', 'Potri.006G087400' => 'ptr', 'Potri.010G226100' => 'ptr', 'Potri.014G069200' => 'ptr', 'Potri.014G104000' => 'ptr', 'Potri.016G100200' => 'ptr', 'Pp3c10_20450' => 'ppa', 'Pp3c1_42400' => 'ppa', 'Pp3c3_24390' => 'ppa', 'Pp3c3_2860' => 'ppa', 'PRCOL_00003193' => 'pco', 'Prupe.2G144500' => 'ppe', 'Prupe.2G195700' => 'ppe', 'Prupe.2G209800' => 'ppe', 'Prupe.5G080000' => 'ppe', 'Prupe.6G257900' => 'ppe', 'Psat3g001160' => 'psa', 'Psat6g181880' => 'psa', 'Psat7g233720' => 'psa', 'PSO063G7587' => 'pso', 'PSO339G2145' => 'pso', 'PSO339G3369' => 'pso', 'PSO478G2747' => 'pso', 'PSO513G0140' => 'pso', 'PSO782G1614' => 'pso', 'PSO782G4889' => 'pso', 'PSO782G5485' => 'pso', 'PSO801G0241' => 'pso', 'QL07p048854' => 'qlo', 'QL08p046745' => 'qlo', 'QL08p052606' => 'qlo', 'QL08p053414' => 'qlo', 'QL08p054868' => 'qlo', 'RcHm_v2.0_Chr1g0350251' => 'rch', 'RcHm_v2.0_Chr1g0360851' => 'rch', 'RcHm_v2.0_Chr1g0362791' => 'rch', 'RcHm_v2.0_Chr3g0466281' => 'rch', 'RcHm_v2.0_Chr7g0201481' => 'rch', 'Rhsim01G0148600' => 'rsi', 'Rhsim05G0194400' => 'rsi', 'Rhsim07G0000700' => 'rsi', 'Rhsim07G0000800' => 'rsi', 'Rhsim07G0027900' => 'rsi', 'Rhsim09G0149500' => 'rsi', 'RhsimUnG0186900' => 'rsi', 'Sabra01G0089900' => 'sbr', 'Sabra02G0114700' => 'sbr', 'Sabra02G0116300' => 'sbr', 'Sabra03G0080100' => 'sbr', 'Sabra08G0024300' => 'sbr', 'Sabra10G0174300' => 'sbr', 'Sabra14G0048900' => 'sbr', 'Sabra14G0076500' => 'sbr', 'SalBow5G2513' => 'sbo', 'Sc01g0002300' => 'sci', 'Sc01g0004450' => 'sci', 'Sc06g0001680' => 'sci', 'Sc23g0003580' => 'sci', 'Sed0000913' => 'sed', 'Sed0001655' => 'sed', 'Sed0007745' => 'sed', 'Sed0010951' => 'sed', 'Sed0017599' => 'sed', 'Sed0021405' => 'sed', 'Sed0022810' => 'sed', 'SEGI_07099' => 'sgi', 'SEGI_11931' => 'sgi', 'SEGI_13187' => 'sgi', 'SEGI_29958' => 'sgi', 'SEGI_36351' => 'sgi', 'SGA_v2.0_scaffold126G33770' => 'sas', 'SGA_v2.0_scaffold153G37003' => 'sas', 'SGA_v2.0_scaffold2G01359' => 'sas', 'SGA_v2.0_scaffold5G03064' => 'sas', 'SGA_v2.0_scaffold95G28903' => 'sas', 'SHI12701' => 'shi', 'SHI26410' => 'shi', 'SHI38997' => 'shi', 'SHI53759' => 'shi', 'SHI53886' => 'shi', 'SHI54714' => 'shi', 'SMO011G0041' => 'smo', 'SMO146G0251' => 'smo', 'SMO160G0004' => 'smo', 'SMO174G0057' => 'smo', 'SMO244G0089' => 'smo', 'SMO296G0011' => 'smo', 'Solyc01g091280.3' => 'sly', 'Solyc05g047610.3' => 'sly', 'Solyc05g047640.3' => 'sly', 'Solyc05g055630.3' => 'sly', 'Solyc10g018160.2' => 'sly', 'Solyc10g084820.2' => 'sly', 'Solyc10g086565.2' => 'sly', 'Sopen01g037030' => 'spe', 'Sopen05g027920' => 'spe', 'Sopen05g034070' => 'spe', 'Sopen10g007260' => 'spe', 'Sopen10g034260' => 'spe', 'Sopen10g035950' => 'spe', 'Sp3g07710' => 'spa', 'Sp4g27420' => 'spa', 'Sp5g02450' => 'spa', 'Sp6g01280' => 'spa', 'Sp6g38480' => 'spa', 'Sp7g20780' => 'spa', 'TAR374G1413' => 'tar', 'TAR623G1777' => 'tar', 'TAR629G2370' => 'tar', 'TAR633G1759' => 'tar', 'TAR636G3387' => 'tar', 'THA.LOC104802447' => 'tha', 'THA.LOC104813916' => 'tha', 'THA.LOC104816423' => 'tha', 'THA.LOC104817246' => 'tha', 'THA.LOC104825895' => 'tha', 'Thecc.01G335200' => 'tca', 'Thecc.01G377400' => 'tca', 'Thecc.03G262200' => 'tca', 'Thecc.05G036800' => 'tca', 'Thecc.10G080500' => 'tca', 'Thecc.10G080800' => 'tca', 'Thhalv10001560m.g' => 'esa', 'Thhalv10006120m.g' => 'esa', 'Thhalv10014375m.g' => 'esa', 'Thhalv10021264m.g' => 'esa', 'Thhalv10028856m.g' => 'esa', 'TPR.G1914' => 'tpr', 'TPR.G4757' => 'tpr', 'TPR.G5595' => 'tpr', 'TWI14G0952' => 'twi', 'TWI14G1307' => 'twi', 'TWI38G2143' => 'twi', 'TWI59G0826' => 'twi', 'TWI77G0527' => 'twi', 'TWI81G0150' => 'twi', 'unitig_21.g21018' => 'ugi', 'unitig_26.g9725' => 'ugi', 'unitig_744.g24653' => 'ugi', 'unitig_749.g13778' => 'ugi', 'unitig_899.g15035' => 'ugi', 'vmacro04296' => 'vma', 'vmacro04852' => 'vma', 'vmacro13404' => 'vma', 'vmacro20169' => 'vma', 'vmacro21014' => 'vma', 'VMungo0331G0237' => 'vmu', 'VMungo0331G0706' => 'vmu', 'VMungo0331G1361' => 'vmu', 'VMungo0331G1489' => 'vmu', 'VMungo0540G1037' => 'vmu', 'VMungo0720G2487' => 'vmu', 'VMungo0720G2721' => 'vmu', 'Zm00001eb086860' => 'zma', 'Zm00001eb104760' => 'zma', 'Zm00001eb148220' => 'zma', 'Zm00001eb259030' => 'zma', 'Zm00001eb289590' => 'zma', 'Zm00001eb420150' => 'zma' ), 'gf_id' => 'HOM05D000968', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000968' ), 'data_identifier' => 'HOM05D000968', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000968', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p31690' => 'bna', 'A03p36040' => 'bna', 'A03p53730' => 'bna', 'A04p01410' => 'bna', 'A05p05420' => 'bna', 'A05p39630' => 'bna', 'A05p39640' => 'bna', 'A09p00970' => 'bna', 'A09p53060' => 'bna', 'A10p31890' => 'bna', 'Aa31LG10G15040' => 'aar', 'Aa31LG1G21090' => 'aar', 'Aa31LG1G26900' => 'aar', 'Aa31LG3G1820' => 'aar', 'Aa31LG5G1100' => 'aar', 'Aa31LG6G4740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2265' => 'aag', 'Actinidia07998' => 'ach', 'Actinidia11266' => 'ach', 'Actinidia12682' => 'ach', 'Actinidia26479' => 'ach', 'Actinidia31406' => 'ach', 'Actinidia32437' => 'ach', 'Actinidia38862' => 'ach', 'Ah.05g174230' => 'amhyb', 'Ah.05g179070' => 'amhyb', 'Ah.05g179090' => 'amhyb', 'Ah.12g059950' => 'amhyb', 'AL3G20480' => 'aly', 'AL4G44520' => 'aly', 'AL5G43110' => 'aly', 'AL6G13890' => 'aly', 'AL6G52620' => 'aly', 'AL7G30830' => 'aly', 'Aqoxy1G00899' => 'aox', 'Aqoxy5G04333' => 'aox', 'Aqoxy7G00641' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3IZ0NN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4EF6AW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W9P8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79GA3M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C43NQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFCU6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G95YVJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCHK29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LU1UG8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX91RN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGB4B1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8DA0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9H7JI' => 'arhy', 'AT3G09320' => 'ath', 'AT3G60800' => 'ath', 'AT4G00840' => 'ath', 'AT4G22750' => 'ath', 'AT5G04270' => 'ath', 'ATR0090G003' => 'atr', 'ATR0559G349' => 'atr', 'ATR0680G261' => 'atr', 'ATR0810G048' => 'atr', 'Atru.chr12.831' => 'acertr', 'Atru.chr5.303' => 'acertr', 'Atru.chr5.748' => 'acertr', 'Atru.chr8.1999' => 'acertr', 'Atru.chr9.1436' => 'acertr', 'AUR62004211' => 'cqu', 'AUR62004548' => 'cqu', 'AUR62013637' => 'cqu', 'AUR62022662' => 'cqu', 'AUR62025777' => 'cqu', 'AUR62042386' => 'cqu', 'BcaB01g02310' => 'bca', 'BcaB01g06062' => 'bca', 'BcaB02g08975' => 'bca', 'BcaB02g08980' => 'bca', 'BcaC01g04228' => 'bca', 'BcaC01g06830' => 'bca', 'BcaC02g10186' => 'bca', 'BcaC02g12214' => 'bca', 'BcaC04g24101' => 'bca', 'BcaC05g29520' => 'bca', 'BcaC05g29661' => 'bca', 'BcaC06g32130' => 'bca', 'BcaC06g32131' => 'bca', 'BcaC07g40601' => 'bca', 'BcaC07g42641' => 'bca', 'BcaNung01038' => 'bca', 'BcaNung01676' => 'bca', 'BcaNung02480' => 'bca', 'BcaNung07376' => 'bca', 'BolC3t16146H' => 'bol', 'BolC3t16637H' => 'bol', 'BolC4t22257H' => 'bol', 'BolC4t24728H' => 'bol', 'BolC5t34517H' => 'bol', 'BolC7t45703H' => 'bol', 'BolC8t51166H' => 'bol', 'BolC9t53038H' => 'bol', 'BolC9t60000H' => 'bol', 'BraA01t01345Z' => 'bra', 'BraA01t01346Z' => 'bra', 'BraA01t01348Z' => 'bra', 'BraA03t12347Z' => 'bra', 'BraA03t12775Z' => 'bra', 'BraA03t14439Z' => 'bra', 'BraA04t15860Z' => 'bra', 'BraA05t19511Z' => 'bra', 'BraA05t22746Z' => 'bra', 'BraA09t35767Z' => 'bra', 'BraA09t40732Z' => 'bra', 'BraA10t45233Z' => 'bra', 'C03p38720' => 'bna', 'C03p43680' => 'bna', 'C04p06350' => 'bna', 'C04p31800' => 'bna', 'C05p58680' => 'bna', 'C07p52110' => 'bna', 'C08p35760' => 'bna', 'C09p01050' => 'bna', 'C09p72600' => 'bna', 'CAN.G106.2' => 'can', 'CAN.G1482.1' => 'can', 'CAN.G324.12' => 'can', 'CAN.G388.20' => 'can', 'CAN.G412.7' => 'can', 'CAN.G694.32' => 'can', 'CAN.G92.12' => 'can', 'CANSAT11G2353' => 'cansat', 'CANSAT21G1398' => 'cansat', 'CANSAT56G2456' => 'cansat', 'CANSAT56G3031' => 'cansat', 'CANSAT56G4539' => 'cansat', 'CARHR083680' => 'chi', 'CARHR171190' => 'chi', 'CARHR209010' => 'chi', 'CARHR229680' => 'chi', 'CARHR249490' => 'chi', 'Carub.0003s0844' => 'cru', 'Carub.0005s2755' => 'cru', 'Carub.0006s0322' => 'cru', 'Carub.0006s3586' => 'cru', 'Carub.0007s1855' => 'cru', 'Ca_07808_v3' => 'car', 'Ca_09535_v3' => 'car', 'Ca_10548_v3' => 'car', 'Ca_19913_v3' => 'car', 'Ca_19916_v3' => 'car', 'Ca_19975_v3' => 'car', 'CBR_g22876' => 'cbr', 'CBR_g22879' => 'cbr', 'CBR_g38491' => 'cbr', 'CBR_g54185' => 'cbr', 'CBR_g54190' => 'cbr', 'Cc02_g11020' => 'ccan', 'Cc02_g23920' => 'ccan', 'Cc02_g39860' => 'ccan', 'Cc02_g39870' => 'ccan', 'Cc03_g06760' => 'ccan', 'Cc06_g02450' => 'ccan', 'Cc09_g09450' => 'ccan', 'CDE02G1959' => 'cde', 'CDE04G0600' => 'cde', 'CDE07G1996' => 'cde', 'CDE07G2078' => 'cde', 'CDE11G0611' => 'cde', 'Cfa001683' => 'cfa', 'Cfa001734' => 'cfa', 'Cfa001737' => 'cfa', 'Cfa003751' => 'cfa', 'Cfa012019' => 'cfa', 'Cfa017353' => 'cfa', 'Cfa017732' => 'cfa', 'Cfa022464' => 'cfa', 'Ciclev10012400m.g' => 'ccl', 'Ciclev10021242m.g' => 'ccl', 'Ciclev10021302m.g' => 'ccl', 'Ciclev10021463m.g' => 'ccl', 'Ciclev10032359m.g' => 'ccl', 'CiPaw.01G081000' => 'cil', 'CiPaw.01G262500' => 'cil', 'CiPaw.01G269800' => 'cil', 'CiPaw.02G168400' => 'cil', 'CiPaw.05G119500' => 'cil', 'CiPaw.11G147300' => 'cil', 'ClCG01G003630' => 'cla', 'ClCG05G000510' => 'cla', 'ClCG05G002300' => 'cla', 'ClCG08G007650' => 'cla', 'ClCG10G021250' => 'cla', 'COL.COLO4_06218' => 'col', 'COL.COLO4_12538' => 'col', 'COL.COLO4_14775' => 'col', 'COL.COLO4_23875' => 'col', 'Cpa.g.sc141.16' => 'cpa', 'Cpa.g.sc169.16' => 'cpa', 'Cpa.g.sc244.4' => 'cpa', 'Cpa.g.sc244.5' => 'cpa', 'Cpa.g.sc29.87' => 'cpa', 'Cpa.g.sc53.115' => 'cpa', 'Cre03.g207502' => 'cre', 'Cre06.g277000' => 'cre', 'Cre09.g394050' => 'cre', 'CsaV3_3G007680' => 'csa', 'CsaV3_3G009710' => 'csa', 'CsaV3_3G034790' => 'csa', 'CsaV3_5G003750' => 'csa', 'CsaV3_6G036620' => 'csa', 'CSS0002288' => 'camsi', 'CSS0011250' => 'camsi', 'CSS0021619' => 'camsi', 'CSS0046701' => 'camsi', 'DCAR_006420' => 'dca', 'DCAR_006865' => 'dca', 'DCAR_008558' => 'dca', 'DCAR_028754' => 'dca', 'DCAR_028755' => 'dca', 'Dinv31218' => 'din', 'Dinv32371' => 'din', 'Dinv34250' => 'din', 'Dinv37156' => 'din', 'Dinv43704' => 'din', 'Duzib093G1811' => 'dzi', 'Duzib106G1622' => 'dzi', 'Duzib114G0504' => 'dzi', 'Duzib128G0338' => 'dzi', 'Duzib128G1577' => 'dzi', 'Duzib133G0104' => 'dzi', 'Duzib133G1080' => 'dzi', 'Duzib138G0324' => 'dzi', 'Duzib138G0394' => 'dzi', 'Duzib205G0122' => 'dzi', 'Duzib268G1020' => 'dzi', 'Duzib268G1359' => 'dzi', 'ECA232G3929' => 'eca', 'ECA236G2210' => 'eca', 'ECA236G2287' => 'eca', 'ECA240G4568' => 'eca', 'ECA247G0894' => 'eca', 'EL10Ac1g00200' => 'bvu', 'EL10Ac1g00886' => 'bvu', 'EL10As1g23091' => 'bvu', 'EL10As1g23092' => 'bvu', 'Eucgr.A01284' => 'egr', 'Eucgr.A01285' => 'egr', 'Eucgr.D02456' => 'egr', 'Eucgr.E00018' => 'egr', 'Eucgr.E01439' => 'egr', 'Eucgr.G02859' => 'egr', 'FAN01G0168' => 'fan', 'FAN01G0453' => 'fan', 'FAN01G2761' => 'fan', 'FAN02G1239' => 'fan', 'FAN03G0645' => 'fan', 'FAN03G2707' => 'fan', 'FAN03G2978' => 'fan', 'FAN04G0227' => 'fan', 'FAN06G0091' => 'fan', 'FAN06G1418' => 'fan', 'FAN06G1512' => 'fan', 'FAN06G1986' => 'fan', 'FAN06G2905' => 'fan', 'FAN06G4325' => 'fan', 'FAN08G0033' => 'fan', 'FAN09G0642' => 'fan', 'FAN10G1763' => 'fan', 'FAN10G2026' => 'fan', 'FAN10G2513' => 'fan', 'FAN10G3402' => 'fan', 'FAN10G3564' => 'fan', 'FAN10G3987' => 'fan', 'FAN13G1490' => 'fan', 'FAN14G5857' => 'fan', 'FAN18G1188' => 'fan', 'FvH4_5g00750' => 'fve', 'FvH4_6g13410' => 'fve', 'FvH4_7g11740' => 'fve', 'FvH4_7g17410' => 'fve', 'FvH4_7g18860' => 'fve', 'Glyma.01G099100' => 'gma', 'Glyma.01G142300' => 'gma', 'Glyma.03G025500' => 'gma', 'Glyma.03G069700' => 'gma', 'Glyma.03G260000' => 'gma', 'Glyma.09G269800' => 'gma', 'Glyma.10G208700' => 'gma', 'Glyma.18G220400' => 'gma', 'Glyma.20G182000' => 'gma', 'Gohir.A01G221726' => 'ghi', 'Gohir.A07G134600' => 'ghi', 'Gohir.A07G146000' => 'ghi', 'Gohir.A08G173900' => 'ghi', 'Gohir.A09G194900' => 'ghi', 'Gohir.A10G204100' => 'ghi', 'Gohir.A11G080600' => 'ghi', 'Gohir.A11G327500' => 'ghi', 'Gohir.A12G101800' => 'ghi', 'Gohir.D01G211200' => 'ghi', 'Gohir.D07G139200' => 'ghi', 'Gohir.D07G152100' => 'ghi', 'Gohir.D08G192600' => 'ghi', 'Gohir.D09G189200' => 'ghi', 'Gohir.D10G212000' => 'ghi', 'Gohir.D11G085200' => 'ghi', 'Gohir.D11G346400' => 'ghi', 'Gohir.D12G104800' => 'ghi', 'Gorai.001G151300' => 'gra', 'Gorai.001G174100' => 'gra', 'Gorai.002G257000' => 'gra', 'Gorai.004G202600' => 'gra', 'Gorai.007G090900' => 'gra', 'Gorai.007G376700' => 'gra', 'Gorai.008G114100' => 'gra', 'Gorai.011G237900' => 'gra', 'GSVIVG01005450001' => 'vvi', 'GSVIVG01016232001' => 'vvi', 'GSVIVG01026157001' => 'vvi', 'GSVIVG01027419001' => 'vvi', 'GSVIVG01027631001' => 'vvi', 'GSVIVG01034143001' => 'vvi', 'HanXRQChr03g0093921' => 'han', 'HanXRQChr04g0120001' => 'han', 'HanXRQChr04g0122561' => 'han', 'HanXRQChr09g0246851' => 'han', 'HanXRQChr10g0293311' => 'han', 'HanXRQChr13g0425231' => 'han', 'HanXRQChr16g0532571' => 'han', 'Haze_09050' => 'cav', 'Haze_15715' => 'cav', 'Haze_15716' => 'cav', 'Haze_16803' => 'cav', 'Haze_16850' => 'cav', 'Hma1.2p1_0301F.1_g118655' => 'hma', 'Hma1.2p1_0309F.1_g120590' => 'hma', 'Hma1.2p1_0936F.1_g238900' => 'hma', 'Hma1.2p1_3552F.1_g336740' => 'hma', 'HPP92_003520' => 'vpl', 'HPP92_006628' => 'vpl', 'HPP92_006645' => 'vpl', 'HPP92_014669' => 'vpl', 'HPP92_015077' => 'vpl', 'Hund16742' => 'sun', 'Hund17022' => 'sun', 'Lalb_Chr02g0152131' => 'lal', 'Lalb_Chr05g0225371' => 'lal', 'Lalb_Chr07g0189841' => 'lal', 'Lalb_Chr07g0192961' => 'lal', 'Lalb_Chr12g0208221' => 'lal', 'Lalb_Chr13g0291211' => 'lal', 'Lalb_Chr13g0291781' => 'lal', 'Lalb_Chr18g0044651' => 'lal', 'Lalb_Chr21g0313731' => 'lal', 'Lj1g0022533' => 'lja', 'Lj2A18T50' => 'lonja', 'Lj2A92G93' => 'lonja', 'Lj3A965T73' => 'lonja', 'Lj3g0000673' => 'lja', 'Lj3g0002666' => 'lja', 'Lj4g0016985' => 'lja', 'Lj5g0003625' => 'lja', 'Lj7A529G36' => 'lonja', 'Lj9A569T49' => 'lonja', 'Lj9A604T63' => 'lonja', 'Lsat_1_v5_gn_3_132060' => 'lsa', 'Lsat_1_v5_gn_4_68941' => 'lsa', 'Lsat_1_v5_gn_5_95580' => 'lsa', 'Lsat_1_v5_gn_7_161' => 'lsa', 'Lsat_1_v5_gn_7_7041' => 'lsa', 'Lsat_1_v5_gn_9_33481' => 'lsa', 'Lsat_1_v5_gn_9_68260' => 'lsa', 'Manes.01G073100' => 'mes', 'Manes.01G266300' => 'mes', 'Manes.02G033300' => 'mes', 'Manes.05G017900' => 'mes', 'Manes.05G046100' => 'mes', 'Manes.08G080900' => 'mes', 'Manes.10G049400' => 'mes', 'Mapoly0009s0186' => 'mpo', 'Mapoly0036s0118' => 'mpo', 'Mapoly0101s0046' => 'mpo', 'MBI04_g30218_MAGBIO' => 'mbi', 'MBI04_g35564_MAGBIO' => 'mbi', 'MBI12_g34011_MAGBIO' => 'mbi', 'MBI14_g04655_MAGBIO' => 'mbi', 'MCO07G653' => 'mco', 'MCO10G173' => 'mco', 'MD01G1087100' => 'mdo', 'MD01G1104200' => 'mdo', 'MD02G1205100' => 'mdo', 'MD04G1079200' => 'mdo', 'MD04G1131400' => 'mdo', 'MD07G1121600' => 'mdo', 'MD07G1157300' => 'mdo', 'MD07G1171000' => 'mdo', 'MD12G1144500' => 'mdo', 'Medtr1g094610' => 'mtr', 'Medtr4g021795' => 'mtr', 'Medtr4g023760' => 'mtr', 'Medtr7g118050' => 'mtr', 'MELO3C005582.2' => 'cme', 'MELO3C005989.2' => 'cme', 'MELO3C006192.2' => 'cme', 'MELO3C009248.2' => 'cme', 'MELO3C019817.2' => 'cme', 'Migut.B01625' => 'egut', 'Migut.B01915' => 'egut', 'Migut.F01721' => 'egut', 'Migut.J00314' => 'egut', 'MSTRG.20742' => 'ama', 'MSTRG.8134' => 'ama', 'Nitab4.5_0000096g0010' => 'nta', 'Nitab4.5_0000202g0030' => 'nta', 'Nitab4.5_0000216g0370' => 'nta', 'Nitab4.5_0000457g0230' => 'nta', 'Nitab4.5_0001702g0170' => 'nta', 'Nitab4.5_0003607g0010' => 'nta', 'Nitab4.5_0004917g0020' => 'nta', 'Nitab4.5_0007059g0010' => 'nta', 'Nitab4.5_0007184g0010' => 'nta', 'Nitab4.5_0007346g0020' => 'nta', 'Nn1g00410' => 'nnu', 'Nn1g01252' => 'nnu', 'Nn2g11168' => 'nnu', 'Nn2g13403' => 'nnu', 'Nn2g13760' => 'nnu', 'Nn4g26380' => 'nnu', 'Oeu000806.2' => 'oeu', 'Oeu005788.1' => 'oeu', 'Oeu006900.3' => 'oeu', 'Oeu007797.1' => 'oeu', 'Oeu011932.1' => 'oeu', 'Oeu022739.1' => 'oeu', 'Oeu037918.1' => 'oeu', 'Oeu055490.2' => 'oeu', 'Os01g0844400' => 'osa', 'Os02g0819100' => 'osa', 'Os03g0804300' => 'osa', 'Os05g0458000' => 'osa', 'Os07g0467800' => 'osa', 'Os12g0602200' => 'osa', 'Peaxi162Scf00013g03444' => 'pax', 'Peaxi162Scf00094g01120' => 'pax', 'Peaxi162Scf00191g01211' => 'pax', 'Peaxi162Scf00238g01110' => 'pax', 'Peaxi162Scf00330g00719' => 'pax', 'Peaxi162Scf00627g00018' => 'pax', 'PGR031G2686' => 'pgr', 'PGR042G0809' => 'pgr', 'PGR142G0193' => 'pgr', 'PGSC0003DMG400011066' => 'stu', 'PGSC0003DMG400012041' => 'stu', 'PGSC0003DMG400013678' => 'stu', 'PGSC0003DMG400023477' => 'stu', 'PGSC0003DMG400025956' => 'stu', 'PGSC0003DMG401019151' => 'stu', 'Phvul.006G116400' => 'pvu', 'Phvul.007G097300' => 'pvu', 'Phvul.010G015000' => 'pvu', 'Phvul.010G083900' => 'pvu', 'Potri.001G117100' => 'ptr', 'Potri.002G147300' => 'ptr', 'Potri.003G115600' => 'ptr', 'Potri.006G087400' => 'ptr', 'Potri.010G226100' => 'ptr', 'Potri.014G069200' => 'ptr', 'Potri.014G104000' => 'ptr', 'Potri.016G100200' => 'ptr', 'Pp3c10_20450' => 'ppa', 'Pp3c1_42400' => 'ppa', 'Pp3c3_24390' => 'ppa', 'Pp3c3_2860' => 'ppa', 'PRCOL_00003193' => 'pco', 'Prupe.2G144500' => 'ppe', 'Prupe.2G195700' => 'ppe', 'Prupe.2G209800' => 'ppe', 'Prupe.5G080000' => 'ppe', 'Prupe.6G257900' => 'ppe', 'Psat3g001160' => 'psa', 'Psat6g181880' => 'psa', 'Psat7g233720' => 'psa', 'PSO063G7587' => 'pso', 'PSO339G2145' => 'pso', 'PSO339G3369' => 'pso', 'PSO478G2747' => 'pso', 'PSO513G0140' => 'pso', 'PSO782G1614' => 'pso', 'PSO782G4889' => 'pso', 'PSO782G5485' => 'pso', 'PSO801G0241' => 'pso', 'QL07p048854' => 'qlo', 'QL08p046745' => 'qlo', 'QL08p052606' => 'qlo', 'QL08p053414' => 'qlo', 'QL08p054868' => 'qlo', 'RcHm_v2.0_Chr1g0350251' => 'rch', 'RcHm_v2.0_Chr1g0360851' => 'rch', 'RcHm_v2.0_Chr1g0362791' => 'rch', 'RcHm_v2.0_Chr3g0466281' => 'rch', 'RcHm_v2.0_Chr7g0201481' => 'rch', 'Rhsim01G0148600' => 'rsi', 'Rhsim05G0194400' => 'rsi', 'Rhsim07G0000700' => 'rsi', 'Rhsim07G0000800' => 'rsi', 'Rhsim07G0027900' => 'rsi', 'Rhsim09G0149500' => 'rsi', 'RhsimUnG0186900' => 'rsi', 'Sabra01G0089900' => 'sbr', 'Sabra02G0114700' => 'sbr', 'Sabra02G0116300' => 'sbr', 'Sabra03G0080100' => 'sbr', 'Sabra08G0024300' => 'sbr', 'Sabra10G0174300' => 'sbr', 'Sabra14G0048900' => 'sbr', 'Sabra14G0076500' => 'sbr', 'SalBow5G2513' => 'sbo', 'Sc01g0002300' => 'sci', 'Sc01g0004450' => 'sci', 'Sc06g0001680' => 'sci', 'Sc23g0003580' => 'sci', 'Sed0000913' => 'sed', 'Sed0001655' => 'sed', 'Sed0007745' => 'sed', 'Sed0010951' => 'sed', 'Sed0017599' => 'sed', 'Sed0021405' => 'sed', 'Sed0022810' => 'sed', 'SEGI_07099' => 'sgi', 'SEGI_11931' => 'sgi', 'SEGI_13187' => 'sgi', 'SEGI_29958' => 'sgi', 'SEGI_36351' => 'sgi', 'SGA_v2.0_scaffold126G33770' => 'sas', 'SGA_v2.0_scaffold153G37003' => 'sas', 'SGA_v2.0_scaffold2G01359' => 'sas', 'SGA_v2.0_scaffold5G03064' => 'sas', 'SGA_v2.0_scaffold95G28903' => 'sas', 'SHI12701' => 'shi', 'SHI26410' => 'shi', 'SHI38997' => 'shi', 'SHI53759' => 'shi', 'SHI53886' => 'shi', 'SHI54714' => 'shi', 'SMO011G0041' => 'smo', 'SMO146G0251' => 'smo', 'SMO160G0004' => 'smo', 'SMO174G0057' => 'smo', 'SMO244G0089' => 'smo', 'SMO296G0011' => 'smo', 'Solyc01g091280.3' => 'sly', 'Solyc05g047610.3' => 'sly', 'Solyc05g047640.3' => 'sly', 'Solyc05g055630.3' => 'sly', 'Solyc10g018160.2' => 'sly', 'Solyc10g084820.2' => 'sly', 'Solyc10g086565.2' => 'sly', 'Sopen01g037030' => 'spe', 'Sopen05g027920' => 'spe', 'Sopen05g034070' => 'spe', 'Sopen10g007260' => 'spe', 'Sopen10g034260' => 'spe', 'Sopen10g035950' => 'spe', 'Sp3g07710' => 'spa', 'Sp4g27420' => 'spa', 'Sp5g02450' => 'spa', 'Sp6g01280' => 'spa', 'Sp6g38480' => 'spa', 'Sp7g20780' => 'spa', 'TAR374G1413' => 'tar', 'TAR623G1777' => 'tar', 'TAR629G2370' => 'tar', 'TAR633G1759' => 'tar', 'TAR636G3387' => 'tar', 'THA.LOC104802447' => 'tha', 'THA.LOC104813916' => 'tha', 'THA.LOC104816423' => 'tha', 'THA.LOC104817246' => 'tha', 'THA.LOC104825895' => 'tha', 'Thecc.01G335200' => 'tca', 'Thecc.01G377400' => 'tca', 'Thecc.03G262200' => 'tca', 'Thecc.05G036800' => 'tca', 'Thecc.10G080500' => 'tca', 'Thecc.10G080800' => 'tca', 'Thhalv10001560m.g' => 'esa', 'Thhalv10006120m.g' => 'esa', 'Thhalv10014375m.g' => 'esa', 'Thhalv10021264m.g' => 'esa', 'Thhalv10028856m.g' => 'esa', 'TPR.G1914' => 'tpr', 'TPR.G4757' => 'tpr', 'TPR.G5595' => 'tpr', 'TWI14G0952' => 'twi', 'TWI14G1307' => 'twi', 'TWI38G2143' => 'twi', 'TWI59G0826' => 'twi', 'TWI77G0527' => 'twi', 'TWI81G0150' => 'twi', 'unitig_21.g21018' => 'ugi', 'unitig_26.g9725' => 'ugi', 'unitig_744.g24653' => 'ugi', 'unitig_749.g13778' => 'ugi', 'unitig_899.g15035' => 'ugi', 'vmacro04296' => 'vma', 'vmacro04852' => 'vma', 'vmacro13404' => 'vma', 'vmacro20169' => 'vma', 'vmacro21014' => 'vma', 'VMungo0331G0237' => 'vmu', 'VMungo0331G0706' => 'vmu', 'VMungo0331G1361' => 'vmu', 'VMungo0331G1489' => 'vmu', 'VMungo0540G1037' => 'vmu', 'VMungo0720G2487' => 'vmu', 'VMungo0720G2721' => 'vmu', 'Zm00001eb086860' => 'zma', 'Zm00001eb104760' => 'zma', 'Zm00001eb148220' => 'zma', 'Zm00001eb259030' => 'zma', 'Zm00001eb289590' => 'zma', 'Zm00001eb420150' => 'zma' ) $gf_id = 'HOM05D000968' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000968' ) $data_identifier = 'HOM05D000968' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 19, 'bol' => (int) 9, 'bra' => (int) 12, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 5, 'ccan' => (int) 7, 'cde' => (int) 5, 'cfa' => (int) 8, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 4, 'dca' => (int) 5, 'din' => (int) 5, 'dzi' => (int) 12, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 25, 'fve' => (int) 5, 'gma' => (int) 9, 'ghi' => (int) 18, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 7, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 5, 'sun' => (int) 2, 'lal' => (int) 9, 'lja' => (int) 5, 'lonja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 9, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 2, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 3, 'stu' => (int) 6, 'pvu' => (int) 4, 'ptr' => (int) 8, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 3, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 1, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 5, 'sas' => (int) 5, 'shi' => (int) 6, 'smo' => (int) 6, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 3, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420150' $species_info = array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ) $local_species = 'gma' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000968', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p31690' => 'bna', 'A03p36040' => 'bna', 'A03p53730' => 'bna', 'A04p01410' => 'bna', 'A05p05420' => 'bna', 'A05p39630' => 'bna', 'A05p39640' => 'bna', 'A09p00970' => 'bna', 'A09p53060' => 'bna', 'A10p31890' => 'bna', 'Aa31LG10G15040' => 'aar', 'Aa31LG1G21090' => 'aar', 'Aa31LG1G26900' => 'aar', 'Aa31LG3G1820' => 'aar', 'Aa31LG5G1100' => 'aar', 'Aa31LG6G4740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2265' => 'aag', 'Actinidia07998' => 'ach', 'Actinidia11266' => 'ach', 'Actinidia12682' => 'ach', 'Actinidia26479' => 'ach', 'Actinidia31406' => 'ach', 'Actinidia32437' => 'ach', 'Actinidia38862' => 'ach', 'Ah.05g174230' => 'amhyb', 'Ah.05g179070' => 'amhyb', 'Ah.05g179090' => 'amhyb', 'Ah.12g059950' => 'amhyb', 'AL3G20480' => 'aly', 'AL4G44520' => 'aly', 'AL5G43110' => 'aly', 'AL6G13890' => 'aly', 'AL6G52620' => 'aly', 'AL7G30830' => 'aly', 'Aqoxy1G00899' => 'aox', 'Aqoxy5G04333' => 'aox', 'Aqoxy7G00641' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3IZ0NN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4EF6AW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W9P8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79GA3M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C43NQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFCU6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G95YVJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCHK29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LU1UG8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX91RN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGB4B1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8DA0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9H7JI' => 'arhy', 'AT3G09320' => 'ath', 'AT3G60800' => 'ath', 'AT4G00840' => 'ath', 'AT4G22750' => 'ath', 'AT5G04270' => 'ath', 'ATR0090G003' => 'atr', 'ATR0559G349' => 'atr', 'ATR0680G261' => 'atr', 'ATR0810G048' => 'atr', 'Atru.chr12.831' => 'acertr', 'Atru.chr5.303' => 'acertr', 'Atru.chr5.748' => 'acertr', 'Atru.chr8.1999' => 'acertr', 'Atru.chr9.1436' => 'acertr', 'AUR62004211' => 'cqu', 'AUR62004548' => 'cqu', 'AUR62013637' => 'cqu', 'AUR62022662' => 'cqu', 'AUR62025777' => 'cqu', 'AUR62042386' => 'cqu', 'BcaB01g02310' => 'bca', 'BcaB01g06062' => 'bca', 'BcaB02g08975' => 'bca', 'BcaB02g08980' => 'bca', 'BcaC01g04228' => 'bca', 'BcaC01g06830' => 'bca', 'BcaC02g10186' => 'bca', 'BcaC02g12214' => 'bca', 'BcaC04g24101' => 'bca', 'BcaC05g29520' => 'bca', 'BcaC05g29661' => 'bca', 'BcaC06g32130' => 'bca', 'BcaC06g32131' => 'bca', 'BcaC07g40601' => 'bca', 'BcaC07g42641' => 'bca', 'BcaNung01038' => 'bca', 'BcaNung01676' => 'bca', 'BcaNung02480' => 'bca', 'BcaNung07376' => 'bca', 'BolC3t16146H' => 'bol', 'BolC3t16637H' => 'bol', 'BolC4t22257H' => 'bol', 'BolC4t24728H' => 'bol', 'BolC5t34517H' => 'bol', 'BolC7t45703H' => 'bol', 'BolC8t51166H' => 'bol', 'BolC9t53038H' => 'bol', 'BolC9t60000H' => 'bol', 'BraA01t01345Z' => 'bra', 'BraA01t01346Z' => 'bra', 'BraA01t01348Z' => 'bra', 'BraA03t12347Z' => 'bra', 'BraA03t12775Z' => 'bra', 'BraA03t14439Z' => 'bra', 'BraA04t15860Z' => 'bra', 'BraA05t19511Z' => 'bra', 'BraA05t22746Z' => 'bra', 'BraA09t35767Z' => 'bra', 'BraA09t40732Z' => 'bra', 'BraA10t45233Z' => 'bra', 'C03p38720' => 'bna', 'C03p43680' => 'bna', 'C04p06350' => 'bna', 'C04p31800' => 'bna', 'C05p58680' => 'bna', 'C07p52110' => 'bna', 'C08p35760' => 'bna', 'C09p01050' => 'bna', 'C09p72600' => 'bna', 'CAN.G106.2' => 'can', 'CAN.G1482.1' => 'can', 'CAN.G324.12' => 'can', 'CAN.G388.20' => 'can', 'CAN.G412.7' => 'can', 'CAN.G694.32' => 'can', 'CAN.G92.12' => 'can', 'CANSAT11G2353' => 'cansat', 'CANSAT21G1398' => 'cansat', 'CANSAT56G2456' => 'cansat', 'CANSAT56G3031' => 'cansat', 'CANSAT56G4539' => 'cansat', 'CARHR083680' => 'chi', 'CARHR171190' => 'chi', 'CARHR209010' => 'chi', 'CARHR229680' => 'chi', 'CARHR249490' => 'chi', 'Carub.0003s0844' => 'cru', 'Carub.0005s2755' => 'cru', 'Carub.0006s0322' => 'cru', 'Carub.0006s3586' => 'cru', 'Carub.0007s1855' => 'cru', 'Ca_07808_v3' => 'car', 'Ca_09535_v3' => 'car', 'Ca_10548_v3' => 'car', 'Ca_19913_v3' => 'car', 'Ca_19916_v3' => 'car', 'Ca_19975_v3' => 'car', 'CBR_g22876' => 'cbr', 'CBR_g22879' => 'cbr', 'CBR_g38491' => 'cbr', 'CBR_g54185' => 'cbr', 'CBR_g54190' => 'cbr', 'Cc02_g11020' => 'ccan', 'Cc02_g23920' => 'ccan', 'Cc02_g39860' => 'ccan', 'Cc02_g39870' => 'ccan', 'Cc03_g06760' => 'ccan', 'Cc06_g02450' => 'ccan', 'Cc09_g09450' => 'ccan', 'CDE02G1959' => 'cde', 'CDE04G0600' => 'cde', 'CDE07G1996' => 'cde', 'CDE07G2078' => 'cde', 'CDE11G0611' => 'cde', 'Cfa001683' => 'cfa', 'Cfa001734' => 'cfa', 'Cfa001737' => 'cfa', 'Cfa003751' => 'cfa', 'Cfa012019' => 'cfa', 'Cfa017353' => 'cfa', 'Cfa017732' => 'cfa', 'Cfa022464' => 'cfa', 'Ciclev10012400m.g' => 'ccl', 'Ciclev10021242m.g' => 'ccl', 'Ciclev10021302m.g' => 'ccl', 'Ciclev10021463m.g' => 'ccl', 'Ciclev10032359m.g' => 'ccl', 'CiPaw.01G081000' => 'cil', 'CiPaw.01G262500' => 'cil', 'CiPaw.01G269800' => 'cil', 'CiPaw.02G168400' => 'cil', 'CiPaw.05G119500' => 'cil', 'CiPaw.11G147300' => 'cil', 'ClCG01G003630' => 'cla', 'ClCG05G000510' => 'cla', 'ClCG05G002300' => 'cla', 'ClCG08G007650' => 'cla', 'ClCG10G021250' => 'cla', 'COL.COLO4_06218' => 'col', 'COL.COLO4_12538' => 'col', 'COL.COLO4_14775' => 'col', 'COL.COLO4_23875' => 'col', 'Cpa.g.sc141.16' => 'cpa', 'Cpa.g.sc169.16' => 'cpa', 'Cpa.g.sc244.4' => 'cpa', 'Cpa.g.sc244.5' => 'cpa', 'Cpa.g.sc29.87' => 'cpa', 'Cpa.g.sc53.115' => 'cpa', 'Cre03.g207502' => 'cre', 'Cre06.g277000' => 'cre', 'Cre09.g394050' => 'cre', 'CsaV3_3G007680' => 'csa', 'CsaV3_3G009710' => 'csa', 'CsaV3_3G034790' => 'csa', 'CsaV3_5G003750' => 'csa', 'CsaV3_6G036620' => 'csa', 'CSS0002288' => 'camsi', 'CSS0011250' => 'camsi', 'CSS0021619' => 'camsi', 'CSS0046701' => 'camsi', 'DCAR_006420' => 'dca', 'DCAR_006865' => 'dca', 'DCAR_008558' => 'dca', 'DCAR_028754' => 'dca', 'DCAR_028755' => 'dca', 'Dinv31218' => 'din', 'Dinv32371' => 'din', 'Dinv34250' => 'din', 'Dinv37156' => 'din', 'Dinv43704' => 'din', 'Duzib093G1811' => 'dzi', 'Duzib106G1622' => 'dzi', 'Duzib114G0504' => 'dzi', 'Duzib128G0338' => 'dzi', 'Duzib128G1577' => 'dzi', 'Duzib133G0104' => 'dzi', 'Duzib133G1080' => 'dzi', 'Duzib138G0324' => 'dzi', 'Duzib138G0394' => 'dzi', 'Duzib205G0122' => 'dzi', 'Duzib268G1020' => 'dzi', 'Duzib268G1359' => 'dzi', 'ECA232G3929' => 'eca', 'ECA236G2210' => 'eca', 'ECA236G2287' => 'eca', 'ECA240G4568' => 'eca', 'ECA247G0894' => 'eca', 'EL10Ac1g00200' => 'bvu', 'EL10Ac1g00886' => 'bvu', 'EL10As1g23091' => 'bvu', 'EL10As1g23092' => 'bvu', 'Eucgr.A01284' => 'egr', 'Eucgr.A01285' => 'egr', 'Eucgr.D02456' => 'egr', 'Eucgr.E00018' => 'egr', 'Eucgr.E01439' => 'egr', 'Eucgr.G02859' => 'egr', 'FAN01G0168' => 'fan', 'FAN01G0453' => 'fan', 'FAN01G2761' => 'fan', 'FAN02G1239' => 'fan', 'FAN03G0645' => 'fan', 'FAN03G2707' => 'fan', 'FAN03G2978' => 'fan', 'FAN04G0227' => 'fan', 'FAN06G0091' => 'fan', 'FAN06G1418' => 'fan', 'FAN06G1512' => 'fan', 'FAN06G1986' => 'fan', 'FAN06G2905' => 'fan', 'FAN06G4325' => 'fan', 'FAN08G0033' => 'fan', 'FAN09G0642' => 'fan', 'FAN10G1763' => 'fan', 'FAN10G2026' => 'fan', 'FAN10G2513' => 'fan', 'FAN10G3402' => 'fan', 'FAN10G3564' => 'fan', 'FAN10G3987' => 'fan', 'FAN13G1490' => 'fan', 'FAN14G5857' => 'fan', 'FAN18G1188' => 'fan', 'FvH4_5g00750' => 'fve', 'FvH4_6g13410' => 'fve', 'FvH4_7g11740' => 'fve', 'FvH4_7g17410' => 'fve', 'FvH4_7g18860' => 'fve', 'Glyma.01G099100' => 'gma', 'Glyma.01G142300' => 'gma', 'Glyma.03G025500' => 'gma', 'Glyma.03G069700' => 'gma', 'Glyma.03G260000' => 'gma', 'Glyma.09G269800' => 'gma', 'Glyma.10G208700' => 'gma', 'Glyma.18G220400' => 'gma', 'Glyma.20G182000' => 'gma', 'Gohir.A01G221726' => 'ghi', 'Gohir.A07G134600' => 'ghi', 'Gohir.A07G146000' => 'ghi', 'Gohir.A08G173900' => 'ghi', 'Gohir.A09G194900' => 'ghi', 'Gohir.A10G204100' => 'ghi', 'Gohir.A11G080600' => 'ghi', 'Gohir.A11G327500' => 'ghi', 'Gohir.A12G101800' => 'ghi', 'Gohir.D01G211200' => 'ghi', 'Gohir.D07G139200' => 'ghi', 'Gohir.D07G152100' => 'ghi', 'Gohir.D08G192600' => 'ghi', 'Gohir.D09G189200' => 'ghi', 'Gohir.D10G212000' => 'ghi', 'Gohir.D11G085200' => 'ghi', 'Gohir.D11G346400' => 'ghi', 'Gohir.D12G104800' => 'ghi', 'Gorai.001G151300' => 'gra', 'Gorai.001G174100' => 'gra', 'Gorai.002G257000' => 'gra', 'Gorai.004G202600' => 'gra', 'Gorai.007G090900' => 'gra', 'Gorai.007G376700' => 'gra', 'Gorai.008G114100' => 'gra', 'Gorai.011G237900' => 'gra', 'GSVIVG01005450001' => 'vvi', 'GSVIVG01016232001' => 'vvi', 'GSVIVG01026157001' => 'vvi', 'GSVIVG01027419001' => 'vvi', 'GSVIVG01027631001' => 'vvi', 'GSVIVG01034143001' => 'vvi', 'HanXRQChr03g0093921' => 'han', 'HanXRQChr04g0120001' => 'han', 'HanXRQChr04g0122561' => 'han', 'HanXRQChr09g0246851' => 'han', 'HanXRQChr10g0293311' => 'han', 'HanXRQChr13g0425231' => 'han', 'HanXRQChr16g0532571' => 'han', 'Haze_09050' => 'cav', 'Haze_15715' => 'cav', 'Haze_15716' => 'cav', 'Haze_16803' => 'cav', 'Haze_16850' => 'cav', 'Hma1.2p1_0301F.1_g118655' => 'hma', 'Hma1.2p1_0309F.1_g120590' => 'hma', 'Hma1.2p1_0936F.1_g238900' => 'hma', 'Hma1.2p1_3552F.1_g336740' => 'hma', 'HPP92_003520' => 'vpl', 'HPP92_006628' => 'vpl', 'HPP92_006645' => 'vpl', 'HPP92_014669' => 'vpl', 'HPP92_015077' => 'vpl', 'Hund16742' => 'sun', 'Hund17022' => 'sun', 'Lalb_Chr02g0152131' => 'lal', 'Lalb_Chr05g0225371' => 'lal', 'Lalb_Chr07g0189841' => 'lal', 'Lalb_Chr07g0192961' => 'lal', 'Lalb_Chr12g0208221' => 'lal', 'Lalb_Chr13g0291211' => 'lal', 'Lalb_Chr13g0291781' => 'lal', 'Lalb_Chr18g0044651' => 'lal', 'Lalb_Chr21g0313731' => 'lal', 'Lj1g0022533' => 'lja', 'Lj2A18T50' => 'lonja', 'Lj2A92G93' => 'lonja', 'Lj3A965T73' => 'lonja', 'Lj3g0000673' => 'lja', 'Lj3g0002666' => 'lja', 'Lj4g0016985' => 'lja', 'Lj5g0003625' => 'lja', 'Lj7A529G36' => 'lonja', 'Lj9A569T49' => 'lonja', 'Lj9A604T63' => 'lonja', 'Lsat_1_v5_gn_3_132060' => 'lsa', 'Lsat_1_v5_gn_4_68941' => 'lsa', 'Lsat_1_v5_gn_5_95580' => 'lsa', 'Lsat_1_v5_gn_7_161' => 'lsa', 'Lsat_1_v5_gn_7_7041' => 'lsa', 'Lsat_1_v5_gn_9_33481' => 'lsa', 'Lsat_1_v5_gn_9_68260' => 'lsa', 'Manes.01G073100' => 'mes', 'Manes.01G266300' => 'mes', 'Manes.02G033300' => 'mes', 'Manes.05G017900' => 'mes', 'Manes.05G046100' => 'mes', 'Manes.08G080900' => 'mes', 'Manes.10G049400' => 'mes', 'Mapoly0009s0186' => 'mpo', 'Mapoly0036s0118' => 'mpo', 'Mapoly0101s0046' => 'mpo', 'MBI04_g30218_MAGBIO' => 'mbi', 'MBI04_g35564_MAGBIO' => 'mbi', 'MBI12_g34011_MAGBIO' => 'mbi', 'MBI14_g04655_MAGBIO' => 'mbi', 'MCO07G653' => 'mco', 'MCO10G173' => 'mco', 'MD01G1087100' => 'mdo', 'MD01G1104200' => 'mdo', 'MD02G1205100' => 'mdo', 'MD04G1079200' => 'mdo', 'MD04G1131400' => 'mdo', 'MD07G1121600' => 'mdo', 'MD07G1157300' => 'mdo', 'MD07G1171000' => 'mdo', 'MD12G1144500' => 'mdo', 'Medtr1g094610' => 'mtr', 'Medtr4g021795' => 'mtr', 'Medtr4g023760' => 'mtr', 'Medtr7g118050' => 'mtr', 'MELO3C005582.2' => 'cme', 'MELO3C005989.2' => 'cme', 'MELO3C006192.2' => 'cme', 'MELO3C009248.2' => 'cme', 'MELO3C019817.2' => 'cme', 'Migut.B01625' => 'egut', 'Migut.B01915' => 'egut', 'Migut.F01721' => 'egut', 'Migut.J00314' => 'egut', 'MSTRG.20742' => 'ama', 'MSTRG.8134' => 'ama', 'Nitab4.5_0000096g0010' => 'nta', 'Nitab4.5_0000202g0030' => 'nta', 'Nitab4.5_0000216g0370' => 'nta', 'Nitab4.5_0000457g0230' => 'nta', 'Nitab4.5_0001702g0170' => 'nta', 'Nitab4.5_0003607g0010' => 'nta', 'Nitab4.5_0004917g0020' => 'nta', 'Nitab4.5_0007059g0010' => 'nta', 'Nitab4.5_0007184g0010' => 'nta', 'Nitab4.5_0007346g0020' => 'nta', 'Nn1g00410' => 'nnu', 'Nn1g01252' => 'nnu', 'Nn2g11168' => 'nnu', 'Nn2g13403' => 'nnu', 'Nn2g13760' => 'nnu', 'Nn4g26380' => 'nnu', 'Oeu000806.2' => 'oeu', 'Oeu005788.1' => 'oeu', 'Oeu006900.3' => 'oeu', 'Oeu007797.1' => 'oeu', 'Oeu011932.1' => 'oeu', 'Oeu022739.1' => 'oeu', 'Oeu037918.1' => 'oeu', 'Oeu055490.2' => 'oeu', 'Os01g0844400' => 'osa', 'Os02g0819100' => 'osa', 'Os03g0804300' => 'osa', 'Os05g0458000' => 'osa', 'Os07g0467800' => 'osa', 'Os12g0602200' => 'osa', 'Peaxi162Scf00013g03444' => 'pax', 'Peaxi162Scf00094g01120' => 'pax', 'Peaxi162Scf00191g01211' => 'pax', 'Peaxi162Scf00238g01110' => 'pax', 'Peaxi162Scf00330g00719' => 'pax', 'Peaxi162Scf00627g00018' => 'pax', 'PGR031G2686' => 'pgr', 'PGR042G0809' => 'pgr', 'PGR142G0193' => 'pgr', 'PGSC0003DMG400011066' => 'stu', 'PGSC0003DMG400012041' => 'stu', 'PGSC0003DMG400013678' => 'stu', 'PGSC0003DMG400023477' => 'stu', 'PGSC0003DMG400025956' => 'stu', 'PGSC0003DMG401019151' => 'stu', 'Phvul.006G116400' => 'pvu', 'Phvul.007G097300' => 'pvu', 'Phvul.010G015000' => 'pvu', 'Phvul.010G083900' => 'pvu', 'Potri.001G117100' => 'ptr', 'Potri.002G147300' => 'ptr', 'Potri.003G115600' => 'ptr', 'Potri.006G087400' => 'ptr', 'Potri.010G226100' => 'ptr', 'Potri.014G069200' => 'ptr', 'Potri.014G104000' => 'ptr', 'Potri.016G100200' => 'ptr', 'Pp3c10_20450' => 'ppa', 'Pp3c1_42400' => 'ppa', 'Pp3c3_24390' => 'ppa', 'Pp3c3_2860' => 'ppa', 'PRCOL_00003193' => 'pco', 'Prupe.2G144500' => 'ppe', 'Prupe.2G195700' => 'ppe', 'Prupe.2G209800' => 'ppe', 'Prupe.5G080000' => 'ppe', 'Prupe.6G257900' => 'ppe', 'Psat3g001160' => 'psa', 'Psat6g181880' => 'psa', 'Psat7g233720' => 'psa', 'PSO063G7587' => 'pso', 'PSO339G2145' => 'pso', 'PSO339G3369' => 'pso', 'PSO478G2747' => 'pso', 'PSO513G0140' => 'pso', 'PSO782G1614' => 'pso', 'PSO782G4889' => 'pso', 'PSO782G5485' => 'pso', 'PSO801G0241' => 'pso', 'QL07p048854' => 'qlo', 'QL08p046745' => 'qlo', 'QL08p052606' => 'qlo', 'QL08p053414' => 'qlo', 'QL08p054868' => 'qlo', 'RcHm_v2.0_Chr1g0350251' => 'rch', 'RcHm_v2.0_Chr1g0360851' => 'rch', 'RcHm_v2.0_Chr1g0362791' => 'rch', 'RcHm_v2.0_Chr3g0466281' => 'rch', 'RcHm_v2.0_Chr7g0201481' => 'rch', 'Rhsim01G0148600' => 'rsi', 'Rhsim05G0194400' => 'rsi', 'Rhsim07G0000700' => 'rsi', 'Rhsim07G0000800' => 'rsi', 'Rhsim07G0027900' => 'rsi', 'Rhsim09G0149500' => 'rsi', 'RhsimUnG0186900' => 'rsi', 'Sabra01G0089900' => 'sbr', 'Sabra02G0114700' => 'sbr', 'Sabra02G0116300' => 'sbr', 'Sabra03G0080100' => 'sbr', 'Sabra08G0024300' => 'sbr', 'Sabra10G0174300' => 'sbr', 'Sabra14G0048900' => 'sbr', 'Sabra14G0076500' => 'sbr', 'SalBow5G2513' => 'sbo', 'Sc01g0002300' => 'sci', 'Sc01g0004450' => 'sci', 'Sc06g0001680' => 'sci', 'Sc23g0003580' => 'sci', 'Sed0000913' => 'sed', 'Sed0001655' => 'sed', 'Sed0007745' => 'sed', 'Sed0010951' => 'sed', 'Sed0017599' => 'sed', 'Sed0021405' => 'sed', 'Sed0022810' => 'sed', 'SEGI_07099' => 'sgi', 'SEGI_11931' => 'sgi', 'SEGI_13187' => 'sgi', 'SEGI_29958' => 'sgi', 'SEGI_36351' => 'sgi', 'SGA_v2.0_scaffold126G33770' => 'sas', 'SGA_v2.0_scaffold153G37003' => 'sas', 'SGA_v2.0_scaffold2G01359' => 'sas', 'SGA_v2.0_scaffold5G03064' => 'sas', 'SGA_v2.0_scaffold95G28903' => 'sas', 'SHI12701' => 'shi', 'SHI26410' => 'shi', 'SHI38997' => 'shi', 'SHI53759' => 'shi', 'SHI53886' => 'shi', 'SHI54714' => 'shi', 'SMO011G0041' => 'smo', 'SMO146G0251' => 'smo', 'SMO160G0004' => 'smo', 'SMO174G0057' => 'smo', 'SMO244G0089' => 'smo', 'SMO296G0011' => 'smo', 'Solyc01g091280.3' => 'sly', 'Solyc05g047610.3' => 'sly', 'Solyc05g047640.3' => 'sly', 'Solyc05g055630.3' => 'sly', 'Solyc10g018160.2' => 'sly', 'Solyc10g084820.2' => 'sly', 'Solyc10g086565.2' => 'sly', 'Sopen01g037030' => 'spe', 'Sopen05g027920' => 'spe', 'Sopen05g034070' => 'spe', 'Sopen10g007260' => 'spe', 'Sopen10g034260' => 'spe', 'Sopen10g035950' => 'spe', 'Sp3g07710' => 'spa', 'Sp4g27420' => 'spa', 'Sp5g02450' => 'spa', 'Sp6g01280' => 'spa', 'Sp6g38480' => 'spa', 'Sp7g20780' => 'spa', 'TAR374G1413' => 'tar', 'TAR623G1777' => 'tar', 'TAR629G2370' => 'tar', 'TAR633G1759' => 'tar', 'TAR636G3387' => 'tar', 'THA.LOC104802447' => 'tha', 'THA.LOC104813916' => 'tha', 'THA.LOC104816423' => 'tha', 'THA.LOC104817246' => 'tha', 'THA.LOC104825895' => 'tha', 'Thecc.01G335200' => 'tca', 'Thecc.01G377400' => 'tca', 'Thecc.03G262200' => 'tca', 'Thecc.05G036800' => 'tca', 'Thecc.10G080500' => 'tca', 'Thecc.10G080800' => 'tca', 'Thhalv10001560m.g' => 'esa', 'Thhalv10006120m.g' => 'esa', 'Thhalv10014375m.g' => 'esa', 'Thhalv10021264m.g' => 'esa', 'Thhalv10028856m.g' => 'esa', 'TPR.G1914' => 'tpr', 'TPR.G4757' => 'tpr', 'TPR.G5595' => 'tpr', 'TWI14G0952' => 'twi', 'TWI14G1307' => 'twi', 'TWI38G2143' => 'twi', 'TWI59G0826' => 'twi', 'TWI77G0527' => 'twi', 'TWI81G0150' => 'twi', 'unitig_21.g21018' => 'ugi', 'unitig_26.g9725' => 'ugi', 'unitig_744.g24653' => 'ugi', 'unitig_749.g13778' => 'ugi', 'unitig_899.g15035' => 'ugi', 'vmacro04296' => 'vma', 'vmacro04852' => 'vma', 'vmacro13404' => 'vma', 'vmacro20169' => 'vma', 'vmacro21014' => 'vma', 'VMungo0331G0237' => 'vmu', 'VMungo0331G0706' => 'vmu', 'VMungo0331G1361' => 'vmu', 'VMungo0331G1489' => 'vmu', 'VMungo0540G1037' => 'vmu', 'VMungo0720G2487' => 'vmu', 'VMungo0720G2721' => 'vmu', 'Zm00001eb086860' => 'zma', 'Zm00001eb104760' => 'zma', 'Zm00001eb148220' => 'zma', 'Zm00001eb259030' => 'zma', 'Zm00001eb289590' => 'zma', 'Zm00001eb420150' => 'zma' ), 'gf_id' => 'HOM05D000968', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000968' ), 'data_identifier' => 'HOM05D000968', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000968', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p31690' => 'bna', 'A03p36040' => 'bna', 'A03p53730' => 'bna', 'A04p01410' => 'bna', 'A05p05420' => 'bna', 'A05p39630' => 'bna', 'A05p39640' => 'bna', 'A09p00970' => 'bna', 'A09p53060' => 'bna', 'A10p31890' => 'bna', 'Aa31LG10G15040' => 'aar', 'Aa31LG1G21090' => 'aar', 'Aa31LG1G26900' => 'aar', 'Aa31LG3G1820' => 'aar', 'Aa31LG5G1100' => 'aar', 'Aa31LG6G4740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2265' => 'aag', 'Actinidia07998' => 'ach', 'Actinidia11266' => 'ach', 'Actinidia12682' => 'ach', 'Actinidia26479' => 'ach', 'Actinidia31406' => 'ach', 'Actinidia32437' => 'ach', 'Actinidia38862' => 'ach', 'Ah.05g174230' => 'amhyb', 'Ah.05g179070' => 'amhyb', 'Ah.05g179090' => 'amhyb', 'Ah.12g059950' => 'amhyb', 'AL3G20480' => 'aly', 'AL4G44520' => 'aly', 'AL5G43110' => 'aly', 'AL6G13890' => 'aly', 'AL6G52620' => 'aly', 'AL7G30830' => 'aly', 'Aqoxy1G00899' => 'aox', 'Aqoxy5G04333' => 'aox', 'Aqoxy7G00641' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3IZ0NN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4EF6AW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W9P8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79GA3M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C43NQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFCU6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G95YVJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCHK29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LU1UG8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX91RN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGB4B1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8DA0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9H7JI' => 'arhy', 'AT3G09320' => 'ath', 'AT3G60800' => 'ath', 'AT4G00840' => 'ath', 'AT4G22750' => 'ath', 'AT5G04270' => 'ath', 'ATR0090G003' => 'atr', 'ATR0559G349' => 'atr', 'ATR0680G261' => 'atr', 'ATR0810G048' => 'atr', 'Atru.chr12.831' => 'acertr', 'Atru.chr5.303' => 'acertr', 'Atru.chr5.748' => 'acertr', 'Atru.chr8.1999' => 'acertr', 'Atru.chr9.1436' => 'acertr', 'AUR62004211' => 'cqu', 'AUR62004548' => 'cqu', 'AUR62013637' => 'cqu', 'AUR62022662' => 'cqu', 'AUR62025777' => 'cqu', 'AUR62042386' => 'cqu', 'BcaB01g02310' => 'bca', 'BcaB01g06062' => 'bca', 'BcaB02g08975' => 'bca', 'BcaB02g08980' => 'bca', 'BcaC01g04228' => 'bca', 'BcaC01g06830' => 'bca', 'BcaC02g10186' => 'bca', 'BcaC02g12214' => 'bca', 'BcaC04g24101' => 'bca', 'BcaC05g29520' => 'bca', 'BcaC05g29661' => 'bca', 'BcaC06g32130' => 'bca', 'BcaC06g32131' => 'bca', 'BcaC07g40601' => 'bca', 'BcaC07g42641' => 'bca', 'BcaNung01038' => 'bca', 'BcaNung01676' => 'bca', 'BcaNung02480' => 'bca', 'BcaNung07376' => 'bca', 'BolC3t16146H' => 'bol', 'BolC3t16637H' => 'bol', 'BolC4t22257H' => 'bol', 'BolC4t24728H' => 'bol', 'BolC5t34517H' => 'bol', 'BolC7t45703H' => 'bol', 'BolC8t51166H' => 'bol', 'BolC9t53038H' => 'bol', 'BolC9t60000H' => 'bol', 'BraA01t01345Z' => 'bra', 'BraA01t01346Z' => 'bra', 'BraA01t01348Z' => 'bra', 'BraA03t12347Z' => 'bra', 'BraA03t12775Z' => 'bra', 'BraA03t14439Z' => 'bra', 'BraA04t15860Z' => 'bra', 'BraA05t19511Z' => 'bra', 'BraA05t22746Z' => 'bra', 'BraA09t35767Z' => 'bra', 'BraA09t40732Z' => 'bra', 'BraA10t45233Z' => 'bra', 'C03p38720' => 'bna', 'C03p43680' => 'bna', 'C04p06350' => 'bna', 'C04p31800' => 'bna', 'C05p58680' => 'bna', 'C07p52110' => 'bna', 'C08p35760' => 'bna', 'C09p01050' => 'bna', 'C09p72600' => 'bna', 'CAN.G106.2' => 'can', 'CAN.G1482.1' => 'can', 'CAN.G324.12' => 'can', 'CAN.G388.20' => 'can', 'CAN.G412.7' => 'can', 'CAN.G694.32' => 'can', 'CAN.G92.12' => 'can', 'CANSAT11G2353' => 'cansat', 'CANSAT21G1398' => 'cansat', 'CANSAT56G2456' => 'cansat', 'CANSAT56G3031' => 'cansat', 'CANSAT56G4539' => 'cansat', 'CARHR083680' => 'chi', 'CARHR171190' => 'chi', 'CARHR209010' => 'chi', 'CARHR229680' => 'chi', 'CARHR249490' => 'chi', 'Carub.0003s0844' => 'cru', 'Carub.0005s2755' => 'cru', 'Carub.0006s0322' => 'cru', 'Carub.0006s3586' => 'cru', 'Carub.0007s1855' => 'cru', 'Ca_07808_v3' => 'car', 'Ca_09535_v3' => 'car', 'Ca_10548_v3' => 'car', 'Ca_19913_v3' => 'car', 'Ca_19916_v3' => 'car', 'Ca_19975_v3' => 'car', 'CBR_g22876' => 'cbr', 'CBR_g22879' => 'cbr', 'CBR_g38491' => 'cbr', 'CBR_g54185' => 'cbr', 'CBR_g54190' => 'cbr', 'Cc02_g11020' => 'ccan', 'Cc02_g23920' => 'ccan', 'Cc02_g39860' => 'ccan', 'Cc02_g39870' => 'ccan', 'Cc03_g06760' => 'ccan', 'Cc06_g02450' => 'ccan', 'Cc09_g09450' => 'ccan', 'CDE02G1959' => 'cde', 'CDE04G0600' => 'cde', 'CDE07G1996' => 'cde', 'CDE07G2078' => 'cde', 'CDE11G0611' => 'cde', 'Cfa001683' => 'cfa', 'Cfa001734' => 'cfa', 'Cfa001737' => 'cfa', 'Cfa003751' => 'cfa', 'Cfa012019' => 'cfa', 'Cfa017353' => 'cfa', 'Cfa017732' => 'cfa', 'Cfa022464' => 'cfa', 'Ciclev10012400m.g' => 'ccl', 'Ciclev10021242m.g' => 'ccl', 'Ciclev10021302m.g' => 'ccl', 'Ciclev10021463m.g' => 'ccl', 'Ciclev10032359m.g' => 'ccl', 'CiPaw.01G081000' => 'cil', 'CiPaw.01G262500' => 'cil', 'CiPaw.01G269800' => 'cil', 'CiPaw.02G168400' => 'cil', 'CiPaw.05G119500' => 'cil', 'CiPaw.11G147300' => 'cil', 'ClCG01G003630' => 'cla', 'ClCG05G000510' => 'cla', 'ClCG05G002300' => 'cla', 'ClCG08G007650' => 'cla', 'ClCG10G021250' => 'cla', 'COL.COLO4_06218' => 'col', 'COL.COLO4_12538' => 'col', 'COL.COLO4_14775' => 'col', 'COL.COLO4_23875' => 'col', 'Cpa.g.sc141.16' => 'cpa', 'Cpa.g.sc169.16' => 'cpa', 'Cpa.g.sc244.4' => 'cpa', 'Cpa.g.sc244.5' => 'cpa', 'Cpa.g.sc29.87' => 'cpa', 'Cpa.g.sc53.115' => 'cpa', 'Cre03.g207502' => 'cre', 'Cre06.g277000' => 'cre', 'Cre09.g394050' => 'cre', 'CsaV3_3G007680' => 'csa', 'CsaV3_3G009710' => 'csa', 'CsaV3_3G034790' => 'csa', 'CsaV3_5G003750' => 'csa', 'CsaV3_6G036620' => 'csa', 'CSS0002288' => 'camsi', 'CSS0011250' => 'camsi', 'CSS0021619' => 'camsi', 'CSS0046701' => 'camsi', 'DCAR_006420' => 'dca', 'DCAR_006865' => 'dca', 'DCAR_008558' => 'dca', 'DCAR_028754' => 'dca', 'DCAR_028755' => 'dca', 'Dinv31218' => 'din', 'Dinv32371' => 'din', 'Dinv34250' => 'din', 'Dinv37156' => 'din', 'Dinv43704' => 'din', 'Duzib093G1811' => 'dzi', 'Duzib106G1622' => 'dzi', 'Duzib114G0504' => 'dzi', 'Duzib128G0338' => 'dzi', 'Duzib128G1577' => 'dzi', 'Duzib133G0104' => 'dzi', 'Duzib133G1080' => 'dzi', 'Duzib138G0324' => 'dzi', 'Duzib138G0394' => 'dzi', 'Duzib205G0122' => 'dzi', 'Duzib268G1020' => 'dzi', 'Duzib268G1359' => 'dzi', 'ECA232G3929' => 'eca', 'ECA236G2210' => 'eca', 'ECA236G2287' => 'eca', 'ECA240G4568' => 'eca', 'ECA247G0894' => 'eca', 'EL10Ac1g00200' => 'bvu', 'EL10Ac1g00886' => 'bvu', 'EL10As1g23091' => 'bvu', 'EL10As1g23092' => 'bvu', 'Eucgr.A01284' => 'egr', 'Eucgr.A01285' => 'egr', 'Eucgr.D02456' => 'egr', 'Eucgr.E00018' => 'egr', 'Eucgr.E01439' => 'egr', 'Eucgr.G02859' => 'egr', 'FAN01G0168' => 'fan', 'FAN01G0453' => 'fan', 'FAN01G2761' => 'fan', 'FAN02G1239' => 'fan', 'FAN03G0645' => 'fan', 'FAN03G2707' => 'fan', 'FAN03G2978' => 'fan', 'FAN04G0227' => 'fan', 'FAN06G0091' => 'fan', 'FAN06G1418' => 'fan', 'FAN06G1512' => 'fan', 'FAN06G1986' => 'fan', 'FAN06G2905' => 'fan', 'FAN06G4325' => 'fan', 'FAN08G0033' => 'fan', 'FAN09G0642' => 'fan', 'FAN10G1763' => 'fan', 'FAN10G2026' => 'fan', 'FAN10G2513' => 'fan', 'FAN10G3402' => 'fan', 'FAN10G3564' => 'fan', 'FAN10G3987' => 'fan', 'FAN13G1490' => 'fan', 'FAN14G5857' => 'fan', 'FAN18G1188' => 'fan', 'FvH4_5g00750' => 'fve', 'FvH4_6g13410' => 'fve', 'FvH4_7g11740' => 'fve', 'FvH4_7g17410' => 'fve', 'FvH4_7g18860' => 'fve', 'Glyma.01G099100' => 'gma', 'Glyma.01G142300' => 'gma', 'Glyma.03G025500' => 'gma', 'Glyma.03G069700' => 'gma', 'Glyma.03G260000' => 'gma', 'Glyma.09G269800' => 'gma', 'Glyma.10G208700' => 'gma', 'Glyma.18G220400' => 'gma', 'Glyma.20G182000' => 'gma', 'Gohir.A01G221726' => 'ghi', 'Gohir.A07G134600' => 'ghi', 'Gohir.A07G146000' => 'ghi', 'Gohir.A08G173900' => 'ghi', 'Gohir.A09G194900' => 'ghi', 'Gohir.A10G204100' => 'ghi', 'Gohir.A11G080600' => 'ghi', 'Gohir.A11G327500' => 'ghi', 'Gohir.A12G101800' => 'ghi', 'Gohir.D01G211200' => 'ghi', 'Gohir.D07G139200' => 'ghi', 'Gohir.D07G152100' => 'ghi', 'Gohir.D08G192600' => 'ghi', 'Gohir.D09G189200' => 'ghi', 'Gohir.D10G212000' => 'ghi', 'Gohir.D11G085200' => 'ghi', 'Gohir.D11G346400' => 'ghi', 'Gohir.D12G104800' => 'ghi', 'Gorai.001G151300' => 'gra', 'Gorai.001G174100' => 'gra', 'Gorai.002G257000' => 'gra', 'Gorai.004G202600' => 'gra', 'Gorai.007G090900' => 'gra', 'Gorai.007G376700' => 'gra', 'Gorai.008G114100' => 'gra', 'Gorai.011G237900' => 'gra', 'GSVIVG01005450001' => 'vvi', 'GSVIVG01016232001' => 'vvi', 'GSVIVG01026157001' => 'vvi', 'GSVIVG01027419001' => 'vvi', 'GSVIVG01027631001' => 'vvi', 'GSVIVG01034143001' => 'vvi', 'HanXRQChr03g0093921' => 'han', 'HanXRQChr04g0120001' => 'han', 'HanXRQChr04g0122561' => 'han', 'HanXRQChr09g0246851' => 'han', 'HanXRQChr10g0293311' => 'han', 'HanXRQChr13g0425231' => 'han', 'HanXRQChr16g0532571' => 'han', 'Haze_09050' => 'cav', 'Haze_15715' => 'cav', 'Haze_15716' => 'cav', 'Haze_16803' => 'cav', 'Haze_16850' => 'cav', 'Hma1.2p1_0301F.1_g118655' => 'hma', 'Hma1.2p1_0309F.1_g120590' => 'hma', 'Hma1.2p1_0936F.1_g238900' => 'hma', 'Hma1.2p1_3552F.1_g336740' => 'hma', 'HPP92_003520' => 'vpl', 'HPP92_006628' => 'vpl', 'HPP92_006645' => 'vpl', 'HPP92_014669' => 'vpl', 'HPP92_015077' => 'vpl', 'Hund16742' => 'sun', 'Hund17022' => 'sun', 'Lalb_Chr02g0152131' => 'lal', 'Lalb_Chr05g0225371' => 'lal', 'Lalb_Chr07g0189841' => 'lal', 'Lalb_Chr07g0192961' => 'lal', 'Lalb_Chr12g0208221' => 'lal', 'Lalb_Chr13g0291211' => 'lal', 'Lalb_Chr13g0291781' => 'lal', 'Lalb_Chr18g0044651' => 'lal', 'Lalb_Chr21g0313731' => 'lal', 'Lj1g0022533' => 'lja', 'Lj2A18T50' => 'lonja', 'Lj2A92G93' => 'lonja', 'Lj3A965T73' => 'lonja', 'Lj3g0000673' => 'lja', 'Lj3g0002666' => 'lja', 'Lj4g0016985' => 'lja', 'Lj5g0003625' => 'lja', 'Lj7A529G36' => 'lonja', 'Lj9A569T49' => 'lonja', 'Lj9A604T63' => 'lonja', 'Lsat_1_v5_gn_3_132060' => 'lsa', 'Lsat_1_v5_gn_4_68941' => 'lsa', 'Lsat_1_v5_gn_5_95580' => 'lsa', 'Lsat_1_v5_gn_7_161' => 'lsa', 'Lsat_1_v5_gn_7_7041' => 'lsa', 'Lsat_1_v5_gn_9_33481' => 'lsa', 'Lsat_1_v5_gn_9_68260' => 'lsa', 'Manes.01G073100' => 'mes', 'Manes.01G266300' => 'mes', 'Manes.02G033300' => 'mes', 'Manes.05G017900' => 'mes', 'Manes.05G046100' => 'mes', 'Manes.08G080900' => 'mes', 'Manes.10G049400' => 'mes', 'Mapoly0009s0186' => 'mpo', 'Mapoly0036s0118' => 'mpo', 'Mapoly0101s0046' => 'mpo', 'MBI04_g30218_MAGBIO' => 'mbi', 'MBI04_g35564_MAGBIO' => 'mbi', 'MBI12_g34011_MAGBIO' => 'mbi', 'MBI14_g04655_MAGBIO' => 'mbi', 'MCO07G653' => 'mco', 'MCO10G173' => 'mco', 'MD01G1087100' => 'mdo', 'MD01G1104200' => 'mdo', 'MD02G1205100' => 'mdo', 'MD04G1079200' => 'mdo', 'MD04G1131400' => 'mdo', 'MD07G1121600' => 'mdo', 'MD07G1157300' => 'mdo', 'MD07G1171000' => 'mdo', 'MD12G1144500' => 'mdo', 'Medtr1g094610' => 'mtr', 'Medtr4g021795' => 'mtr', 'Medtr4g023760' => 'mtr', 'Medtr7g118050' => 'mtr', 'MELO3C005582.2' => 'cme', 'MELO3C005989.2' => 'cme', 'MELO3C006192.2' => 'cme', 'MELO3C009248.2' => 'cme', 'MELO3C019817.2' => 'cme', 'Migut.B01625' => 'egut', 'Migut.B01915' => 'egut', 'Migut.F01721' => 'egut', 'Migut.J00314' => 'egut', 'MSTRG.20742' => 'ama', 'MSTRG.8134' => 'ama', 'Nitab4.5_0000096g0010' => 'nta', 'Nitab4.5_0000202g0030' => 'nta', 'Nitab4.5_0000216g0370' => 'nta', 'Nitab4.5_0000457g0230' => 'nta', 'Nitab4.5_0001702g0170' => 'nta', 'Nitab4.5_0003607g0010' => 'nta', 'Nitab4.5_0004917g0020' => 'nta', 'Nitab4.5_0007059g0010' => 'nta', 'Nitab4.5_0007184g0010' => 'nta', 'Nitab4.5_0007346g0020' => 'nta', 'Nn1g00410' => 'nnu', 'Nn1g01252' => 'nnu', 'Nn2g11168' => 'nnu', 'Nn2g13403' => 'nnu', 'Nn2g13760' => 'nnu', 'Nn4g26380' => 'nnu', 'Oeu000806.2' => 'oeu', 'Oeu005788.1' => 'oeu', 'Oeu006900.3' => 'oeu', 'Oeu007797.1' => 'oeu', 'Oeu011932.1' => 'oeu', 'Oeu022739.1' => 'oeu', 'Oeu037918.1' => 'oeu', 'Oeu055490.2' => 'oeu', 'Os01g0844400' => 'osa', 'Os02g0819100' => 'osa', 'Os03g0804300' => 'osa', 'Os05g0458000' => 'osa', 'Os07g0467800' => 'osa', 'Os12g0602200' => 'osa', 'Peaxi162Scf00013g03444' => 'pax', 'Peaxi162Scf00094g01120' => 'pax', 'Peaxi162Scf00191g01211' => 'pax', 'Peaxi162Scf00238g01110' => 'pax', 'Peaxi162Scf00330g00719' => 'pax', 'Peaxi162Scf00627g00018' => 'pax', 'PGR031G2686' => 'pgr', 'PGR042G0809' => 'pgr', 'PGR142G0193' => 'pgr', 'PGSC0003DMG400011066' => 'stu', 'PGSC0003DMG400012041' => 'stu', 'PGSC0003DMG400013678' => 'stu', 'PGSC0003DMG400023477' => 'stu', 'PGSC0003DMG400025956' => 'stu', 'PGSC0003DMG401019151' => 'stu', 'Phvul.006G116400' => 'pvu', 'Phvul.007G097300' => 'pvu', 'Phvul.010G015000' => 'pvu', 'Phvul.010G083900' => 'pvu', 'Potri.001G117100' => 'ptr', 'Potri.002G147300' => 'ptr', 'Potri.003G115600' => 'ptr', 'Potri.006G087400' => 'ptr', 'Potri.010G226100' => 'ptr', 'Potri.014G069200' => 'ptr', 'Potri.014G104000' => 'ptr', 'Potri.016G100200' => 'ptr', 'Pp3c10_20450' => 'ppa', 'Pp3c1_42400' => 'ppa', 'Pp3c3_24390' => 'ppa', 'Pp3c3_2860' => 'ppa', 'PRCOL_00003193' => 'pco', 'Prupe.2G144500' => 'ppe', 'Prupe.2G195700' => 'ppe', 'Prupe.2G209800' => 'ppe', 'Prupe.5G080000' => 'ppe', 'Prupe.6G257900' => 'ppe', 'Psat3g001160' => 'psa', 'Psat6g181880' => 'psa', 'Psat7g233720' => 'psa', 'PSO063G7587' => 'pso', 'PSO339G2145' => 'pso', 'PSO339G3369' => 'pso', 'PSO478G2747' => 'pso', 'PSO513G0140' => 'pso', 'PSO782G1614' => 'pso', 'PSO782G4889' => 'pso', 'PSO782G5485' => 'pso', 'PSO801G0241' => 'pso', 'QL07p048854' => 'qlo', 'QL08p046745' => 'qlo', 'QL08p052606' => 'qlo', 'QL08p053414' => 'qlo', 'QL08p054868' => 'qlo', 'RcHm_v2.0_Chr1g0350251' => 'rch', 'RcHm_v2.0_Chr1g0360851' => 'rch', 'RcHm_v2.0_Chr1g0362791' => 'rch', 'RcHm_v2.0_Chr3g0466281' => 'rch', 'RcHm_v2.0_Chr7g0201481' => 'rch', 'Rhsim01G0148600' => 'rsi', 'Rhsim05G0194400' => 'rsi', 'Rhsim07G0000700' => 'rsi', 'Rhsim07G0000800' => 'rsi', 'Rhsim07G0027900' => 'rsi', 'Rhsim09G0149500' => 'rsi', 'RhsimUnG0186900' => 'rsi', 'Sabra01G0089900' => 'sbr', 'Sabra02G0114700' => 'sbr', 'Sabra02G0116300' => 'sbr', 'Sabra03G0080100' => 'sbr', 'Sabra08G0024300' => 'sbr', 'Sabra10G0174300' => 'sbr', 'Sabra14G0048900' => 'sbr', 'Sabra14G0076500' => 'sbr', 'SalBow5G2513' => 'sbo', 'Sc01g0002300' => 'sci', 'Sc01g0004450' => 'sci', 'Sc06g0001680' => 'sci', 'Sc23g0003580' => 'sci', 'Sed0000913' => 'sed', 'Sed0001655' => 'sed', 'Sed0007745' => 'sed', 'Sed0010951' => 'sed', 'Sed0017599' => 'sed', 'Sed0021405' => 'sed', 'Sed0022810' => 'sed', 'SEGI_07099' => 'sgi', 'SEGI_11931' => 'sgi', 'SEGI_13187' => 'sgi', 'SEGI_29958' => 'sgi', 'SEGI_36351' => 'sgi', 'SGA_v2.0_scaffold126G33770' => 'sas', 'SGA_v2.0_scaffold153G37003' => 'sas', 'SGA_v2.0_scaffold2G01359' => 'sas', 'SGA_v2.0_scaffold5G03064' => 'sas', 'SGA_v2.0_scaffold95G28903' => 'sas', 'SHI12701' => 'shi', 'SHI26410' => 'shi', 'SHI38997' => 'shi', 'SHI53759' => 'shi', 'SHI53886' => 'shi', 'SHI54714' => 'shi', 'SMO011G0041' => 'smo', 'SMO146G0251' => 'smo', 'SMO160G0004' => 'smo', 'SMO174G0057' => 'smo', 'SMO244G0089' => 'smo', 'SMO296G0011' => 'smo', 'Solyc01g091280.3' => 'sly', 'Solyc05g047610.3' => 'sly', 'Solyc05g047640.3' => 'sly', 'Solyc05g055630.3' => 'sly', 'Solyc10g018160.2' => 'sly', 'Solyc10g084820.2' => 'sly', 'Solyc10g086565.2' => 'sly', 'Sopen01g037030' => 'spe', 'Sopen05g027920' => 'spe', 'Sopen05g034070' => 'spe', 'Sopen10g007260' => 'spe', 'Sopen10g034260' => 'spe', 'Sopen10g035950' => 'spe', 'Sp3g07710' => 'spa', 'Sp4g27420' => 'spa', 'Sp5g02450' => 'spa', 'Sp6g01280' => 'spa', 'Sp6g38480' => 'spa', 'Sp7g20780' => 'spa', 'TAR374G1413' => 'tar', 'TAR623G1777' => 'tar', 'TAR629G2370' => 'tar', 'TAR633G1759' => 'tar', 'TAR636G3387' => 'tar', 'THA.LOC104802447' => 'tha', 'THA.LOC104813916' => 'tha', 'THA.LOC104816423' => 'tha', 'THA.LOC104817246' => 'tha', 'THA.LOC104825895' => 'tha', 'Thecc.01G335200' => 'tca', 'Thecc.01G377400' => 'tca', 'Thecc.03G262200' => 'tca', 'Thecc.05G036800' => 'tca', 'Thecc.10G080500' => 'tca', 'Thecc.10G080800' => 'tca', 'Thhalv10001560m.g' => 'esa', 'Thhalv10006120m.g' => 'esa', 'Thhalv10014375m.g' => 'esa', 'Thhalv10021264m.g' => 'esa', 'Thhalv10028856m.g' => 'esa', 'TPR.G1914' => 'tpr', 'TPR.G4757' => 'tpr', 'TPR.G5595' => 'tpr', 'TWI14G0952' => 'twi', 'TWI14G1307' => 'twi', 'TWI38G2143' => 'twi', 'TWI59G0826' => 'twi', 'TWI77G0527' => 'twi', 'TWI81G0150' => 'twi', 'unitig_21.g21018' => 'ugi', 'unitig_26.g9725' => 'ugi', 'unitig_744.g24653' => 'ugi', 'unitig_749.g13778' => 'ugi', 'unitig_899.g15035' => 'ugi', 'vmacro04296' => 'vma', 'vmacro04852' => 'vma', 'vmacro13404' => 'vma', 'vmacro20169' => 'vma', 'vmacro21014' => 'vma', 'VMungo0331G0237' => 'vmu', 'VMungo0331G0706' => 'vmu', 'VMungo0331G1361' => 'vmu', 'VMungo0331G1489' => 'vmu', 'VMungo0540G1037' => 'vmu', 'VMungo0720G2487' => 'vmu', 'VMungo0720G2721' => 'vmu', 'Zm00001eb086860' => 'zma', 'Zm00001eb104760' => 'zma', 'Zm00001eb148220' => 'zma', 'Zm00001eb259030' => 'zma', 'Zm00001eb289590' => 'zma', 'Zm00001eb420150' => 'zma' ) $gf_id = 'HOM05D000968' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000968' ) $data_identifier = 'HOM05D000968' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 19, 'bol' => (int) 9, 'bra' => (int) 12, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 5, 'ccan' => (int) 7, 'cde' => (int) 5, 'cfa' => (int) 8, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 4, 'dca' => (int) 5, 'din' => (int) 5, 'dzi' => (int) 12, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 25, 'fve' => (int) 5, 'gma' => (int) 9, 'ghi' => (int) 18, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 7, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 5, 'sun' => (int) 2, 'lal' => (int) 9, 'lja' => (int) 5, 'lonja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 9, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 2, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 3, 'stu' => (int) 6, 'pvu' => (int) 4, 'ptr' => (int) 8, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 3, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 1, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 5, 'sas' => (int) 5, 'shi' => (int) 6, 'smo' => (int) 6, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 3, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420150' $species_info = array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ) $local_species = 'ghi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000968', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p31690' => 'bna', 'A03p36040' => 'bna', 'A03p53730' => 'bna', 'A04p01410' => 'bna', 'A05p05420' => 'bna', 'A05p39630' => 'bna', 'A05p39640' => 'bna', 'A09p00970' => 'bna', 'A09p53060' => 'bna', 'A10p31890' => 'bna', 'Aa31LG10G15040' => 'aar', 'Aa31LG1G21090' => 'aar', 'Aa31LG1G26900' => 'aar', 'Aa31LG3G1820' => 'aar', 'Aa31LG5G1100' => 'aar', 'Aa31LG6G4740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2265' => 'aag', 'Actinidia07998' => 'ach', 'Actinidia11266' => 'ach', 'Actinidia12682' => 'ach', 'Actinidia26479' => 'ach', 'Actinidia31406' => 'ach', 'Actinidia32437' => 'ach', 'Actinidia38862' => 'ach', 'Ah.05g174230' => 'amhyb', 'Ah.05g179070' => 'amhyb', 'Ah.05g179090' => 'amhyb', 'Ah.12g059950' => 'amhyb', 'AL3G20480' => 'aly', 'AL4G44520' => 'aly', 'AL5G43110' => 'aly', 'AL6G13890' => 'aly', 'AL6G52620' => 'aly', 'AL7G30830' => 'aly', 'Aqoxy1G00899' => 'aox', 'Aqoxy5G04333' => 'aox', 'Aqoxy7G00641' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3IZ0NN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4EF6AW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W9P8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79GA3M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C43NQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFCU6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G95YVJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCHK29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LU1UG8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX91RN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGB4B1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8DA0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9H7JI' => 'arhy', 'AT3G09320' => 'ath', 'AT3G60800' => 'ath', 'AT4G00840' => 'ath', 'AT4G22750' => 'ath', 'AT5G04270' => 'ath', 'ATR0090G003' => 'atr', 'ATR0559G349' => 'atr', 'ATR0680G261' => 'atr', 'ATR0810G048' => 'atr', 'Atru.chr12.831' => 'acertr', 'Atru.chr5.303' => 'acertr', 'Atru.chr5.748' => 'acertr', 'Atru.chr8.1999' => 'acertr', 'Atru.chr9.1436' => 'acertr', 'AUR62004211' => 'cqu', 'AUR62004548' => 'cqu', 'AUR62013637' => 'cqu', 'AUR62022662' => 'cqu', 'AUR62025777' => 'cqu', 'AUR62042386' => 'cqu', 'BcaB01g02310' => 'bca', 'BcaB01g06062' => 'bca', 'BcaB02g08975' => 'bca', 'BcaB02g08980' => 'bca', 'BcaC01g04228' => 'bca', 'BcaC01g06830' => 'bca', 'BcaC02g10186' => 'bca', 'BcaC02g12214' => 'bca', 'BcaC04g24101' => 'bca', 'BcaC05g29520' => 'bca', 'BcaC05g29661' => 'bca', 'BcaC06g32130' => 'bca', 'BcaC06g32131' => 'bca', 'BcaC07g40601' => 'bca', 'BcaC07g42641' => 'bca', 'BcaNung01038' => 'bca', 'BcaNung01676' => 'bca', 'BcaNung02480' => 'bca', 'BcaNung07376' => 'bca', 'BolC3t16146H' => 'bol', 'BolC3t16637H' => 'bol', 'BolC4t22257H' => 'bol', 'BolC4t24728H' => 'bol', 'BolC5t34517H' => 'bol', 'BolC7t45703H' => 'bol', 'BolC8t51166H' => 'bol', 'BolC9t53038H' => 'bol', 'BolC9t60000H' => 'bol', 'BraA01t01345Z' => 'bra', 'BraA01t01346Z' => 'bra', 'BraA01t01348Z' => 'bra', 'BraA03t12347Z' => 'bra', 'BraA03t12775Z' => 'bra', 'BraA03t14439Z' => 'bra', 'BraA04t15860Z' => 'bra', 'BraA05t19511Z' => 'bra', 'BraA05t22746Z' => 'bra', 'BraA09t35767Z' => 'bra', 'BraA09t40732Z' => 'bra', 'BraA10t45233Z' => 'bra', 'C03p38720' => 'bna', 'C03p43680' => 'bna', 'C04p06350' => 'bna', 'C04p31800' => 'bna', 'C05p58680' => 'bna', 'C07p52110' => 'bna', 'C08p35760' => 'bna', 'C09p01050' => 'bna', 'C09p72600' => 'bna', 'CAN.G106.2' => 'can', 'CAN.G1482.1' => 'can', 'CAN.G324.12' => 'can', 'CAN.G388.20' => 'can', 'CAN.G412.7' => 'can', 'CAN.G694.32' => 'can', 'CAN.G92.12' => 'can', 'CANSAT11G2353' => 'cansat', 'CANSAT21G1398' => 'cansat', 'CANSAT56G2456' => 'cansat', 'CANSAT56G3031' => 'cansat', 'CANSAT56G4539' => 'cansat', 'CARHR083680' => 'chi', 'CARHR171190' => 'chi', 'CARHR209010' => 'chi', 'CARHR229680' => 'chi', 'CARHR249490' => 'chi', 'Carub.0003s0844' => 'cru', 'Carub.0005s2755' => 'cru', 'Carub.0006s0322' => 'cru', 'Carub.0006s3586' => 'cru', 'Carub.0007s1855' => 'cru', 'Ca_07808_v3' => 'car', 'Ca_09535_v3' => 'car', 'Ca_10548_v3' => 'car', 'Ca_19913_v3' => 'car', 'Ca_19916_v3' => 'car', 'Ca_19975_v3' => 'car', 'CBR_g22876' => 'cbr', 'CBR_g22879' => 'cbr', 'CBR_g38491' => 'cbr', 'CBR_g54185' => 'cbr', 'CBR_g54190' => 'cbr', 'Cc02_g11020' => 'ccan', 'Cc02_g23920' => 'ccan', 'Cc02_g39860' => 'ccan', 'Cc02_g39870' => 'ccan', 'Cc03_g06760' => 'ccan', 'Cc06_g02450' => 'ccan', 'Cc09_g09450' => 'ccan', 'CDE02G1959' => 'cde', 'CDE04G0600' => 'cde', 'CDE07G1996' => 'cde', 'CDE07G2078' => 'cde', 'CDE11G0611' => 'cde', 'Cfa001683' => 'cfa', 'Cfa001734' => 'cfa', 'Cfa001737' => 'cfa', 'Cfa003751' => 'cfa', 'Cfa012019' => 'cfa', 'Cfa017353' => 'cfa', 'Cfa017732' => 'cfa', 'Cfa022464' => 'cfa', 'Ciclev10012400m.g' => 'ccl', 'Ciclev10021242m.g' => 'ccl', 'Ciclev10021302m.g' => 'ccl', 'Ciclev10021463m.g' => 'ccl', 'Ciclev10032359m.g' => 'ccl', 'CiPaw.01G081000' => 'cil', 'CiPaw.01G262500' => 'cil', 'CiPaw.01G269800' => 'cil', 'CiPaw.02G168400' => 'cil', 'CiPaw.05G119500' => 'cil', 'CiPaw.11G147300' => 'cil', 'ClCG01G003630' => 'cla', 'ClCG05G000510' => 'cla', 'ClCG05G002300' => 'cla', 'ClCG08G007650' => 'cla', 'ClCG10G021250' => 'cla', 'COL.COLO4_06218' => 'col', 'COL.COLO4_12538' => 'col', 'COL.COLO4_14775' => 'col', 'COL.COLO4_23875' => 'col', 'Cpa.g.sc141.16' => 'cpa', 'Cpa.g.sc169.16' => 'cpa', 'Cpa.g.sc244.4' => 'cpa', 'Cpa.g.sc244.5' => 'cpa', 'Cpa.g.sc29.87' => 'cpa', 'Cpa.g.sc53.115' => 'cpa', 'Cre03.g207502' => 'cre', 'Cre06.g277000' => 'cre', 'Cre09.g394050' => 'cre', 'CsaV3_3G007680' => 'csa', 'CsaV3_3G009710' => 'csa', 'CsaV3_3G034790' => 'csa', 'CsaV3_5G003750' => 'csa', 'CsaV3_6G036620' => 'csa', 'CSS0002288' => 'camsi', 'CSS0011250' => 'camsi', 'CSS0021619' => 'camsi', 'CSS0046701' => 'camsi', 'DCAR_006420' => 'dca', 'DCAR_006865' => 'dca', 'DCAR_008558' => 'dca', 'DCAR_028754' => 'dca', 'DCAR_028755' => 'dca', 'Dinv31218' => 'din', 'Dinv32371' => 'din', 'Dinv34250' => 'din', 'Dinv37156' => 'din', 'Dinv43704' => 'din', 'Duzib093G1811' => 'dzi', 'Duzib106G1622' => 'dzi', 'Duzib114G0504' => 'dzi', 'Duzib128G0338' => 'dzi', 'Duzib128G1577' => 'dzi', 'Duzib133G0104' => 'dzi', 'Duzib133G1080' => 'dzi', 'Duzib138G0324' => 'dzi', 'Duzib138G0394' => 'dzi', 'Duzib205G0122' => 'dzi', 'Duzib268G1020' => 'dzi', 'Duzib268G1359' => 'dzi', 'ECA232G3929' => 'eca', 'ECA236G2210' => 'eca', 'ECA236G2287' => 'eca', 'ECA240G4568' => 'eca', 'ECA247G0894' => 'eca', 'EL10Ac1g00200' => 'bvu', 'EL10Ac1g00886' => 'bvu', 'EL10As1g23091' => 'bvu', 'EL10As1g23092' => 'bvu', 'Eucgr.A01284' => 'egr', 'Eucgr.A01285' => 'egr', 'Eucgr.D02456' => 'egr', 'Eucgr.E00018' => 'egr', 'Eucgr.E01439' => 'egr', 'Eucgr.G02859' => 'egr', 'FAN01G0168' => 'fan', 'FAN01G0453' => 'fan', 'FAN01G2761' => 'fan', 'FAN02G1239' => 'fan', 'FAN03G0645' => 'fan', 'FAN03G2707' => 'fan', 'FAN03G2978' => 'fan', 'FAN04G0227' => 'fan', 'FAN06G0091' => 'fan', 'FAN06G1418' => 'fan', 'FAN06G1512' => 'fan', 'FAN06G1986' => 'fan', 'FAN06G2905' => 'fan', 'FAN06G4325' => 'fan', 'FAN08G0033' => 'fan', 'FAN09G0642' => 'fan', 'FAN10G1763' => 'fan', 'FAN10G2026' => 'fan', 'FAN10G2513' => 'fan', 'FAN10G3402' => 'fan', 'FAN10G3564' => 'fan', 'FAN10G3987' => 'fan', 'FAN13G1490' => 'fan', 'FAN14G5857' => 'fan', 'FAN18G1188' => 'fan', 'FvH4_5g00750' => 'fve', 'FvH4_6g13410' => 'fve', 'FvH4_7g11740' => 'fve', 'FvH4_7g17410' => 'fve', 'FvH4_7g18860' => 'fve', 'Glyma.01G099100' => 'gma', 'Glyma.01G142300' => 'gma', 'Glyma.03G025500' => 'gma', 'Glyma.03G069700' => 'gma', 'Glyma.03G260000' => 'gma', 'Glyma.09G269800' => 'gma', 'Glyma.10G208700' => 'gma', 'Glyma.18G220400' => 'gma', 'Glyma.20G182000' => 'gma', 'Gohir.A01G221726' => 'ghi', 'Gohir.A07G134600' => 'ghi', 'Gohir.A07G146000' => 'ghi', 'Gohir.A08G173900' => 'ghi', 'Gohir.A09G194900' => 'ghi', 'Gohir.A10G204100' => 'ghi', 'Gohir.A11G080600' => 'ghi', 'Gohir.A11G327500' => 'ghi', 'Gohir.A12G101800' => 'ghi', 'Gohir.D01G211200' => 'ghi', 'Gohir.D07G139200' => 'ghi', 'Gohir.D07G152100' => 'ghi', 'Gohir.D08G192600' => 'ghi', 'Gohir.D09G189200' => 'ghi', 'Gohir.D10G212000' => 'ghi', 'Gohir.D11G085200' => 'ghi', 'Gohir.D11G346400' => 'ghi', 'Gohir.D12G104800' => 'ghi', 'Gorai.001G151300' => 'gra', 'Gorai.001G174100' => 'gra', 'Gorai.002G257000' => 'gra', 'Gorai.004G202600' => 'gra', 'Gorai.007G090900' => 'gra', 'Gorai.007G376700' => 'gra', 'Gorai.008G114100' => 'gra', 'Gorai.011G237900' => 'gra', 'GSVIVG01005450001' => 'vvi', 'GSVIVG01016232001' => 'vvi', 'GSVIVG01026157001' => 'vvi', 'GSVIVG01027419001' => 'vvi', 'GSVIVG01027631001' => 'vvi', 'GSVIVG01034143001' => 'vvi', 'HanXRQChr03g0093921' => 'han', 'HanXRQChr04g0120001' => 'han', 'HanXRQChr04g0122561' => 'han', 'HanXRQChr09g0246851' => 'han', 'HanXRQChr10g0293311' => 'han', 'HanXRQChr13g0425231' => 'han', 'HanXRQChr16g0532571' => 'han', 'Haze_09050' => 'cav', 'Haze_15715' => 'cav', 'Haze_15716' => 'cav', 'Haze_16803' => 'cav', 'Haze_16850' => 'cav', 'Hma1.2p1_0301F.1_g118655' => 'hma', 'Hma1.2p1_0309F.1_g120590' => 'hma', 'Hma1.2p1_0936F.1_g238900' => 'hma', 'Hma1.2p1_3552F.1_g336740' => 'hma', 'HPP92_003520' => 'vpl', 'HPP92_006628' => 'vpl', 'HPP92_006645' => 'vpl', 'HPP92_014669' => 'vpl', 'HPP92_015077' => 'vpl', 'Hund16742' => 'sun', 'Hund17022' => 'sun', 'Lalb_Chr02g0152131' => 'lal', 'Lalb_Chr05g0225371' => 'lal', 'Lalb_Chr07g0189841' => 'lal', 'Lalb_Chr07g0192961' => 'lal', 'Lalb_Chr12g0208221' => 'lal', 'Lalb_Chr13g0291211' => 'lal', 'Lalb_Chr13g0291781' => 'lal', 'Lalb_Chr18g0044651' => 'lal', 'Lalb_Chr21g0313731' => 'lal', 'Lj1g0022533' => 'lja', 'Lj2A18T50' => 'lonja', 'Lj2A92G93' => 'lonja', 'Lj3A965T73' => 'lonja', 'Lj3g0000673' => 'lja', 'Lj3g0002666' => 'lja', 'Lj4g0016985' => 'lja', 'Lj5g0003625' => 'lja', 'Lj7A529G36' => 'lonja', 'Lj9A569T49' => 'lonja', 'Lj9A604T63' => 'lonja', 'Lsat_1_v5_gn_3_132060' => 'lsa', 'Lsat_1_v5_gn_4_68941' => 'lsa', 'Lsat_1_v5_gn_5_95580' => 'lsa', 'Lsat_1_v5_gn_7_161' => 'lsa', 'Lsat_1_v5_gn_7_7041' => 'lsa', 'Lsat_1_v5_gn_9_33481' => 'lsa', 'Lsat_1_v5_gn_9_68260' => 'lsa', 'Manes.01G073100' => 'mes', 'Manes.01G266300' => 'mes', 'Manes.02G033300' => 'mes', 'Manes.05G017900' => 'mes', 'Manes.05G046100' => 'mes', 'Manes.08G080900' => 'mes', 'Manes.10G049400' => 'mes', 'Mapoly0009s0186' => 'mpo', 'Mapoly0036s0118' => 'mpo', 'Mapoly0101s0046' => 'mpo', 'MBI04_g30218_MAGBIO' => 'mbi', 'MBI04_g35564_MAGBIO' => 'mbi', 'MBI12_g34011_MAGBIO' => 'mbi', 'MBI14_g04655_MAGBIO' => 'mbi', 'MCO07G653' => 'mco', 'MCO10G173' => 'mco', 'MD01G1087100' => 'mdo', 'MD01G1104200' => 'mdo', 'MD02G1205100' => 'mdo', 'MD04G1079200' => 'mdo', 'MD04G1131400' => 'mdo', 'MD07G1121600' => 'mdo', 'MD07G1157300' => 'mdo', 'MD07G1171000' => 'mdo', 'MD12G1144500' => 'mdo', 'Medtr1g094610' => 'mtr', 'Medtr4g021795' => 'mtr', 'Medtr4g023760' => 'mtr', 'Medtr7g118050' => 'mtr', 'MELO3C005582.2' => 'cme', 'MELO3C005989.2' => 'cme', 'MELO3C006192.2' => 'cme', 'MELO3C009248.2' => 'cme', 'MELO3C019817.2' => 'cme', 'Migut.B01625' => 'egut', 'Migut.B01915' => 'egut', 'Migut.F01721' => 'egut', 'Migut.J00314' => 'egut', 'MSTRG.20742' => 'ama', 'MSTRG.8134' => 'ama', 'Nitab4.5_0000096g0010' => 'nta', 'Nitab4.5_0000202g0030' => 'nta', 'Nitab4.5_0000216g0370' => 'nta', 'Nitab4.5_0000457g0230' => 'nta', 'Nitab4.5_0001702g0170' => 'nta', 'Nitab4.5_0003607g0010' => 'nta', 'Nitab4.5_0004917g0020' => 'nta', 'Nitab4.5_0007059g0010' => 'nta', 'Nitab4.5_0007184g0010' => 'nta', 'Nitab4.5_0007346g0020' => 'nta', 'Nn1g00410' => 'nnu', 'Nn1g01252' => 'nnu', 'Nn2g11168' => 'nnu', 'Nn2g13403' => 'nnu', 'Nn2g13760' => 'nnu', 'Nn4g26380' => 'nnu', 'Oeu000806.2' => 'oeu', 'Oeu005788.1' => 'oeu', 'Oeu006900.3' => 'oeu', 'Oeu007797.1' => 'oeu', 'Oeu011932.1' => 'oeu', 'Oeu022739.1' => 'oeu', 'Oeu037918.1' => 'oeu', 'Oeu055490.2' => 'oeu', 'Os01g0844400' => 'osa', 'Os02g0819100' => 'osa', 'Os03g0804300' => 'osa', 'Os05g0458000' => 'osa', 'Os07g0467800' => 'osa', 'Os12g0602200' => 'osa', 'Peaxi162Scf00013g03444' => 'pax', 'Peaxi162Scf00094g01120' => 'pax', 'Peaxi162Scf00191g01211' => 'pax', 'Peaxi162Scf00238g01110' => 'pax', 'Peaxi162Scf00330g00719' => 'pax', 'Peaxi162Scf00627g00018' => 'pax', 'PGR031G2686' => 'pgr', 'PGR042G0809' => 'pgr', 'PGR142G0193' => 'pgr', 'PGSC0003DMG400011066' => 'stu', 'PGSC0003DMG400012041' => 'stu', 'PGSC0003DMG400013678' => 'stu', 'PGSC0003DMG400023477' => 'stu', 'PGSC0003DMG400025956' => 'stu', 'PGSC0003DMG401019151' => 'stu', 'Phvul.006G116400' => 'pvu', 'Phvul.007G097300' => 'pvu', 'Phvul.010G015000' => 'pvu', 'Phvul.010G083900' => 'pvu', 'Potri.001G117100' => 'ptr', 'Potri.002G147300' => 'ptr', 'Potri.003G115600' => 'ptr', 'Potri.006G087400' => 'ptr', 'Potri.010G226100' => 'ptr', 'Potri.014G069200' => 'ptr', 'Potri.014G104000' => 'ptr', 'Potri.016G100200' => 'ptr', 'Pp3c10_20450' => 'ppa', 'Pp3c1_42400' => 'ppa', 'Pp3c3_24390' => 'ppa', 'Pp3c3_2860' => 'ppa', 'PRCOL_00003193' => 'pco', 'Prupe.2G144500' => 'ppe', 'Prupe.2G195700' => 'ppe', 'Prupe.2G209800' => 'ppe', 'Prupe.5G080000' => 'ppe', 'Prupe.6G257900' => 'ppe', 'Psat3g001160' => 'psa', 'Psat6g181880' => 'psa', 'Psat7g233720' => 'psa', 'PSO063G7587' => 'pso', 'PSO339G2145' => 'pso', 'PSO339G3369' => 'pso', 'PSO478G2747' => 'pso', 'PSO513G0140' => 'pso', 'PSO782G1614' => 'pso', 'PSO782G4889' => 'pso', 'PSO782G5485' => 'pso', 'PSO801G0241' => 'pso', 'QL07p048854' => 'qlo', 'QL08p046745' => 'qlo', 'QL08p052606' => 'qlo', 'QL08p053414' => 'qlo', 'QL08p054868' => 'qlo', 'RcHm_v2.0_Chr1g0350251' => 'rch', 'RcHm_v2.0_Chr1g0360851' => 'rch', 'RcHm_v2.0_Chr1g0362791' => 'rch', 'RcHm_v2.0_Chr3g0466281' => 'rch', 'RcHm_v2.0_Chr7g0201481' => 'rch', 'Rhsim01G0148600' => 'rsi', 'Rhsim05G0194400' => 'rsi', 'Rhsim07G0000700' => 'rsi', 'Rhsim07G0000800' => 'rsi', 'Rhsim07G0027900' => 'rsi', 'Rhsim09G0149500' => 'rsi', 'RhsimUnG0186900' => 'rsi', 'Sabra01G0089900' => 'sbr', 'Sabra02G0114700' => 'sbr', 'Sabra02G0116300' => 'sbr', 'Sabra03G0080100' => 'sbr', 'Sabra08G0024300' => 'sbr', 'Sabra10G0174300' => 'sbr', 'Sabra14G0048900' => 'sbr', 'Sabra14G0076500' => 'sbr', 'SalBow5G2513' => 'sbo', 'Sc01g0002300' => 'sci', 'Sc01g0004450' => 'sci', 'Sc06g0001680' => 'sci', 'Sc23g0003580' => 'sci', 'Sed0000913' => 'sed', 'Sed0001655' => 'sed', 'Sed0007745' => 'sed', 'Sed0010951' => 'sed', 'Sed0017599' => 'sed', 'Sed0021405' => 'sed', 'Sed0022810' => 'sed', 'SEGI_07099' => 'sgi', 'SEGI_11931' => 'sgi', 'SEGI_13187' => 'sgi', 'SEGI_29958' => 'sgi', 'SEGI_36351' => 'sgi', 'SGA_v2.0_scaffold126G33770' => 'sas', 'SGA_v2.0_scaffold153G37003' => 'sas', 'SGA_v2.0_scaffold2G01359' => 'sas', 'SGA_v2.0_scaffold5G03064' => 'sas', 'SGA_v2.0_scaffold95G28903' => 'sas', 'SHI12701' => 'shi', 'SHI26410' => 'shi', 'SHI38997' => 'shi', 'SHI53759' => 'shi', 'SHI53886' => 'shi', 'SHI54714' => 'shi', 'SMO011G0041' => 'smo', 'SMO146G0251' => 'smo', 'SMO160G0004' => 'smo', 'SMO174G0057' => 'smo', 'SMO244G0089' => 'smo', 'SMO296G0011' => 'smo', 'Solyc01g091280.3' => 'sly', 'Solyc05g047610.3' => 'sly', 'Solyc05g047640.3' => 'sly', 'Solyc05g055630.3' => 'sly', 'Solyc10g018160.2' => 'sly', 'Solyc10g084820.2' => 'sly', 'Solyc10g086565.2' => 'sly', 'Sopen01g037030' => 'spe', 'Sopen05g027920' => 'spe', 'Sopen05g034070' => 'spe', 'Sopen10g007260' => 'spe', 'Sopen10g034260' => 'spe', 'Sopen10g035950' => 'spe', 'Sp3g07710' => 'spa', 'Sp4g27420' => 'spa', 'Sp5g02450' => 'spa', 'Sp6g01280' => 'spa', 'Sp6g38480' => 'spa', 'Sp7g20780' => 'spa', 'TAR374G1413' => 'tar', 'TAR623G1777' => 'tar', 'TAR629G2370' => 'tar', 'TAR633G1759' => 'tar', 'TAR636G3387' => 'tar', 'THA.LOC104802447' => 'tha', 'THA.LOC104813916' => 'tha', 'THA.LOC104816423' => 'tha', 'THA.LOC104817246' => 'tha', 'THA.LOC104825895' => 'tha', 'Thecc.01G335200' => 'tca', 'Thecc.01G377400' => 'tca', 'Thecc.03G262200' => 'tca', 'Thecc.05G036800' => 'tca', 'Thecc.10G080500' => 'tca', 'Thecc.10G080800' => 'tca', 'Thhalv10001560m.g' => 'esa', 'Thhalv10006120m.g' => 'esa', 'Thhalv10014375m.g' => 'esa', 'Thhalv10021264m.g' => 'esa', 'Thhalv10028856m.g' => 'esa', 'TPR.G1914' => 'tpr', 'TPR.G4757' => 'tpr', 'TPR.G5595' => 'tpr', 'TWI14G0952' => 'twi', 'TWI14G1307' => 'twi', 'TWI38G2143' => 'twi', 'TWI59G0826' => 'twi', 'TWI77G0527' => 'twi', 'TWI81G0150' => 'twi', 'unitig_21.g21018' => 'ugi', 'unitig_26.g9725' => 'ugi', 'unitig_744.g24653' => 'ugi', 'unitig_749.g13778' => 'ugi', 'unitig_899.g15035' => 'ugi', 'vmacro04296' => 'vma', 'vmacro04852' => 'vma', 'vmacro13404' => 'vma', 'vmacro20169' => 'vma', 'vmacro21014' => 'vma', 'VMungo0331G0237' => 'vmu', 'VMungo0331G0706' => 'vmu', 'VMungo0331G1361' => 'vmu', 'VMungo0331G1489' => 'vmu', 'VMungo0540G1037' => 'vmu', 'VMungo0720G2487' => 'vmu', 'VMungo0720G2721' => 'vmu', 'Zm00001eb086860' => 'zma', 'Zm00001eb104760' => 'zma', 'Zm00001eb148220' => 'zma', 'Zm00001eb259030' => 'zma', 'Zm00001eb289590' => 'zma', 'Zm00001eb420150' => 'zma' ), 'gf_id' => 'HOM05D000968', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000968' ), 'data_identifier' => 'HOM05D000968', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000968', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p31690' => 'bna', 'A03p36040' => 'bna', 'A03p53730' => 'bna', 'A04p01410' => 'bna', 'A05p05420' => 'bna', 'A05p39630' => 'bna', 'A05p39640' => 'bna', 'A09p00970' => 'bna', 'A09p53060' => 'bna', 'A10p31890' => 'bna', 'Aa31LG10G15040' => 'aar', 'Aa31LG1G21090' => 'aar', 'Aa31LG1G26900' => 'aar', 'Aa31LG3G1820' => 'aar', 'Aa31LG5G1100' => 'aar', 'Aa31LG6G4740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2265' => 'aag', 'Actinidia07998' => 'ach', 'Actinidia11266' => 'ach', 'Actinidia12682' => 'ach', 'Actinidia26479' => 'ach', 'Actinidia31406' => 'ach', 'Actinidia32437' => 'ach', 'Actinidia38862' => 'ach', 'Ah.05g174230' => 'amhyb', 'Ah.05g179070' => 'amhyb', 'Ah.05g179090' => 'amhyb', 'Ah.12g059950' => 'amhyb', 'AL3G20480' => 'aly', 'AL4G44520' => 'aly', 'AL5G43110' => 'aly', 'AL6G13890' => 'aly', 'AL6G52620' => 'aly', 'AL7G30830' => 'aly', 'Aqoxy1G00899' => 'aox', 'Aqoxy5G04333' => 'aox', 'Aqoxy7G00641' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3IZ0NN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4EF6AW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W9P8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79GA3M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C43NQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFCU6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G95YVJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCHK29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LU1UG8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX91RN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGB4B1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8DA0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9H7JI' => 'arhy', 'AT3G09320' => 'ath', 'AT3G60800' => 'ath', 'AT4G00840' => 'ath', 'AT4G22750' => 'ath', 'AT5G04270' => 'ath', 'ATR0090G003' => 'atr', 'ATR0559G349' => 'atr', 'ATR0680G261' => 'atr', 'ATR0810G048' => 'atr', 'Atru.chr12.831' => 'acertr', 'Atru.chr5.303' => 'acertr', 'Atru.chr5.748' => 'acertr', 'Atru.chr8.1999' => 'acertr', 'Atru.chr9.1436' => 'acertr', 'AUR62004211' => 'cqu', 'AUR62004548' => 'cqu', 'AUR62013637' => 'cqu', 'AUR62022662' => 'cqu', 'AUR62025777' => 'cqu', 'AUR62042386' => 'cqu', 'BcaB01g02310' => 'bca', 'BcaB01g06062' => 'bca', 'BcaB02g08975' => 'bca', 'BcaB02g08980' => 'bca', 'BcaC01g04228' => 'bca', 'BcaC01g06830' => 'bca', 'BcaC02g10186' => 'bca', 'BcaC02g12214' => 'bca', 'BcaC04g24101' => 'bca', 'BcaC05g29520' => 'bca', 'BcaC05g29661' => 'bca', 'BcaC06g32130' => 'bca', 'BcaC06g32131' => 'bca', 'BcaC07g40601' => 'bca', 'BcaC07g42641' => 'bca', 'BcaNung01038' => 'bca', 'BcaNung01676' => 'bca', 'BcaNung02480' => 'bca', 'BcaNung07376' => 'bca', 'BolC3t16146H' => 'bol', 'BolC3t16637H' => 'bol', 'BolC4t22257H' => 'bol', 'BolC4t24728H' => 'bol', 'BolC5t34517H' => 'bol', 'BolC7t45703H' => 'bol', 'BolC8t51166H' => 'bol', 'BolC9t53038H' => 'bol', 'BolC9t60000H' => 'bol', 'BraA01t01345Z' => 'bra', 'BraA01t01346Z' => 'bra', 'BraA01t01348Z' => 'bra', 'BraA03t12347Z' => 'bra', 'BraA03t12775Z' => 'bra', 'BraA03t14439Z' => 'bra', 'BraA04t15860Z' => 'bra', 'BraA05t19511Z' => 'bra', 'BraA05t22746Z' => 'bra', 'BraA09t35767Z' => 'bra', 'BraA09t40732Z' => 'bra', 'BraA10t45233Z' => 'bra', 'C03p38720' => 'bna', 'C03p43680' => 'bna', 'C04p06350' => 'bna', 'C04p31800' => 'bna', 'C05p58680' => 'bna', 'C07p52110' => 'bna', 'C08p35760' => 'bna', 'C09p01050' => 'bna', 'C09p72600' => 'bna', 'CAN.G106.2' => 'can', 'CAN.G1482.1' => 'can', 'CAN.G324.12' => 'can', 'CAN.G388.20' => 'can', 'CAN.G412.7' => 'can', 'CAN.G694.32' => 'can', 'CAN.G92.12' => 'can', 'CANSAT11G2353' => 'cansat', 'CANSAT21G1398' => 'cansat', 'CANSAT56G2456' => 'cansat', 'CANSAT56G3031' => 'cansat', 'CANSAT56G4539' => 'cansat', 'CARHR083680' => 'chi', 'CARHR171190' => 'chi', 'CARHR209010' => 'chi', 'CARHR229680' => 'chi', 'CARHR249490' => 'chi', 'Carub.0003s0844' => 'cru', 'Carub.0005s2755' => 'cru', 'Carub.0006s0322' => 'cru', 'Carub.0006s3586' => 'cru', 'Carub.0007s1855' => 'cru', 'Ca_07808_v3' => 'car', 'Ca_09535_v3' => 'car', 'Ca_10548_v3' => 'car', 'Ca_19913_v3' => 'car', 'Ca_19916_v3' => 'car', 'Ca_19975_v3' => 'car', 'CBR_g22876' => 'cbr', 'CBR_g22879' => 'cbr', 'CBR_g38491' => 'cbr', 'CBR_g54185' => 'cbr', 'CBR_g54190' => 'cbr', 'Cc02_g11020' => 'ccan', 'Cc02_g23920' => 'ccan', 'Cc02_g39860' => 'ccan', 'Cc02_g39870' => 'ccan', 'Cc03_g06760' => 'ccan', 'Cc06_g02450' => 'ccan', 'Cc09_g09450' => 'ccan', 'CDE02G1959' => 'cde', 'CDE04G0600' => 'cde', 'CDE07G1996' => 'cde', 'CDE07G2078' => 'cde', 'CDE11G0611' => 'cde', 'Cfa001683' => 'cfa', 'Cfa001734' => 'cfa', 'Cfa001737' => 'cfa', 'Cfa003751' => 'cfa', 'Cfa012019' => 'cfa', 'Cfa017353' => 'cfa', 'Cfa017732' => 'cfa', 'Cfa022464' => 'cfa', 'Ciclev10012400m.g' => 'ccl', 'Ciclev10021242m.g' => 'ccl', 'Ciclev10021302m.g' => 'ccl', 'Ciclev10021463m.g' => 'ccl', 'Ciclev10032359m.g' => 'ccl', 'CiPaw.01G081000' => 'cil', 'CiPaw.01G262500' => 'cil', 'CiPaw.01G269800' => 'cil', 'CiPaw.02G168400' => 'cil', 'CiPaw.05G119500' => 'cil', 'CiPaw.11G147300' => 'cil', 'ClCG01G003630' => 'cla', 'ClCG05G000510' => 'cla', 'ClCG05G002300' => 'cla', 'ClCG08G007650' => 'cla', 'ClCG10G021250' => 'cla', 'COL.COLO4_06218' => 'col', 'COL.COLO4_12538' => 'col', 'COL.COLO4_14775' => 'col', 'COL.COLO4_23875' => 'col', 'Cpa.g.sc141.16' => 'cpa', 'Cpa.g.sc169.16' => 'cpa', 'Cpa.g.sc244.4' => 'cpa', 'Cpa.g.sc244.5' => 'cpa', 'Cpa.g.sc29.87' => 'cpa', 'Cpa.g.sc53.115' => 'cpa', 'Cre03.g207502' => 'cre', 'Cre06.g277000' => 'cre', 'Cre09.g394050' => 'cre', 'CsaV3_3G007680' => 'csa', 'CsaV3_3G009710' => 'csa', 'CsaV3_3G034790' => 'csa', 'CsaV3_5G003750' => 'csa', 'CsaV3_6G036620' => 'csa', 'CSS0002288' => 'camsi', 'CSS0011250' => 'camsi', 'CSS0021619' => 'camsi', 'CSS0046701' => 'camsi', 'DCAR_006420' => 'dca', 'DCAR_006865' => 'dca', 'DCAR_008558' => 'dca', 'DCAR_028754' => 'dca', 'DCAR_028755' => 'dca', 'Dinv31218' => 'din', 'Dinv32371' => 'din', 'Dinv34250' => 'din', 'Dinv37156' => 'din', 'Dinv43704' => 'din', 'Duzib093G1811' => 'dzi', 'Duzib106G1622' => 'dzi', 'Duzib114G0504' => 'dzi', 'Duzib128G0338' => 'dzi', 'Duzib128G1577' => 'dzi', 'Duzib133G0104' => 'dzi', 'Duzib133G1080' => 'dzi', 'Duzib138G0324' => 'dzi', 'Duzib138G0394' => 'dzi', 'Duzib205G0122' => 'dzi', 'Duzib268G1020' => 'dzi', 'Duzib268G1359' => 'dzi', 'ECA232G3929' => 'eca', 'ECA236G2210' => 'eca', 'ECA236G2287' => 'eca', 'ECA240G4568' => 'eca', 'ECA247G0894' => 'eca', 'EL10Ac1g00200' => 'bvu', 'EL10Ac1g00886' => 'bvu', 'EL10As1g23091' => 'bvu', 'EL10As1g23092' => 'bvu', 'Eucgr.A01284' => 'egr', 'Eucgr.A01285' => 'egr', 'Eucgr.D02456' => 'egr', 'Eucgr.E00018' => 'egr', 'Eucgr.E01439' => 'egr', 'Eucgr.G02859' => 'egr', 'FAN01G0168' => 'fan', 'FAN01G0453' => 'fan', 'FAN01G2761' => 'fan', 'FAN02G1239' => 'fan', 'FAN03G0645' => 'fan', 'FAN03G2707' => 'fan', 'FAN03G2978' => 'fan', 'FAN04G0227' => 'fan', 'FAN06G0091' => 'fan', 'FAN06G1418' => 'fan', 'FAN06G1512' => 'fan', 'FAN06G1986' => 'fan', 'FAN06G2905' => 'fan', 'FAN06G4325' => 'fan', 'FAN08G0033' => 'fan', 'FAN09G0642' => 'fan', 'FAN10G1763' => 'fan', 'FAN10G2026' => 'fan', 'FAN10G2513' => 'fan', 'FAN10G3402' => 'fan', 'FAN10G3564' => 'fan', 'FAN10G3987' => 'fan', 'FAN13G1490' => 'fan', 'FAN14G5857' => 'fan', 'FAN18G1188' => 'fan', 'FvH4_5g00750' => 'fve', 'FvH4_6g13410' => 'fve', 'FvH4_7g11740' => 'fve', 'FvH4_7g17410' => 'fve', 'FvH4_7g18860' => 'fve', 'Glyma.01G099100' => 'gma', 'Glyma.01G142300' => 'gma', 'Glyma.03G025500' => 'gma', 'Glyma.03G069700' => 'gma', 'Glyma.03G260000' => 'gma', 'Glyma.09G269800' => 'gma', 'Glyma.10G208700' => 'gma', 'Glyma.18G220400' => 'gma', 'Glyma.20G182000' => 'gma', 'Gohir.A01G221726' => 'ghi', 'Gohir.A07G134600' => 'ghi', 'Gohir.A07G146000' => 'ghi', 'Gohir.A08G173900' => 'ghi', 'Gohir.A09G194900' => 'ghi', 'Gohir.A10G204100' => 'ghi', 'Gohir.A11G080600' => 'ghi', 'Gohir.A11G327500' => 'ghi', 'Gohir.A12G101800' => 'ghi', 'Gohir.D01G211200' => 'ghi', 'Gohir.D07G139200' => 'ghi', 'Gohir.D07G152100' => 'ghi', 'Gohir.D08G192600' => 'ghi', 'Gohir.D09G189200' => 'ghi', 'Gohir.D10G212000' => 'ghi', 'Gohir.D11G085200' => 'ghi', 'Gohir.D11G346400' => 'ghi', 'Gohir.D12G104800' => 'ghi', 'Gorai.001G151300' => 'gra', 'Gorai.001G174100' => 'gra', 'Gorai.002G257000' => 'gra', 'Gorai.004G202600' => 'gra', 'Gorai.007G090900' => 'gra', 'Gorai.007G376700' => 'gra', 'Gorai.008G114100' => 'gra', 'Gorai.011G237900' => 'gra', 'GSVIVG01005450001' => 'vvi', 'GSVIVG01016232001' => 'vvi', 'GSVIVG01026157001' => 'vvi', 'GSVIVG01027419001' => 'vvi', 'GSVIVG01027631001' => 'vvi', 'GSVIVG01034143001' => 'vvi', 'HanXRQChr03g0093921' => 'han', 'HanXRQChr04g0120001' => 'han', 'HanXRQChr04g0122561' => 'han', 'HanXRQChr09g0246851' => 'han', 'HanXRQChr10g0293311' => 'han', 'HanXRQChr13g0425231' => 'han', 'HanXRQChr16g0532571' => 'han', 'Haze_09050' => 'cav', 'Haze_15715' => 'cav', 'Haze_15716' => 'cav', 'Haze_16803' => 'cav', 'Haze_16850' => 'cav', 'Hma1.2p1_0301F.1_g118655' => 'hma', 'Hma1.2p1_0309F.1_g120590' => 'hma', 'Hma1.2p1_0936F.1_g238900' => 'hma', 'Hma1.2p1_3552F.1_g336740' => 'hma', 'HPP92_003520' => 'vpl', 'HPP92_006628' => 'vpl', 'HPP92_006645' => 'vpl', 'HPP92_014669' => 'vpl', 'HPP92_015077' => 'vpl', 'Hund16742' => 'sun', 'Hund17022' => 'sun', 'Lalb_Chr02g0152131' => 'lal', 'Lalb_Chr05g0225371' => 'lal', 'Lalb_Chr07g0189841' => 'lal', 'Lalb_Chr07g0192961' => 'lal', 'Lalb_Chr12g0208221' => 'lal', 'Lalb_Chr13g0291211' => 'lal', 'Lalb_Chr13g0291781' => 'lal', 'Lalb_Chr18g0044651' => 'lal', 'Lalb_Chr21g0313731' => 'lal', 'Lj1g0022533' => 'lja', 'Lj2A18T50' => 'lonja', 'Lj2A92G93' => 'lonja', 'Lj3A965T73' => 'lonja', 'Lj3g0000673' => 'lja', 'Lj3g0002666' => 'lja', 'Lj4g0016985' => 'lja', 'Lj5g0003625' => 'lja', 'Lj7A529G36' => 'lonja', 'Lj9A569T49' => 'lonja', 'Lj9A604T63' => 'lonja', 'Lsat_1_v5_gn_3_132060' => 'lsa', 'Lsat_1_v5_gn_4_68941' => 'lsa', 'Lsat_1_v5_gn_5_95580' => 'lsa', 'Lsat_1_v5_gn_7_161' => 'lsa', 'Lsat_1_v5_gn_7_7041' => 'lsa', 'Lsat_1_v5_gn_9_33481' => 'lsa', 'Lsat_1_v5_gn_9_68260' => 'lsa', 'Manes.01G073100' => 'mes', 'Manes.01G266300' => 'mes', 'Manes.02G033300' => 'mes', 'Manes.05G017900' => 'mes', 'Manes.05G046100' => 'mes', 'Manes.08G080900' => 'mes', 'Manes.10G049400' => 'mes', 'Mapoly0009s0186' => 'mpo', 'Mapoly0036s0118' => 'mpo', 'Mapoly0101s0046' => 'mpo', 'MBI04_g30218_MAGBIO' => 'mbi', 'MBI04_g35564_MAGBIO' => 'mbi', 'MBI12_g34011_MAGBIO' => 'mbi', 'MBI14_g04655_MAGBIO' => 'mbi', 'MCO07G653' => 'mco', 'MCO10G173' => 'mco', 'MD01G1087100' => 'mdo', 'MD01G1104200' => 'mdo', 'MD02G1205100' => 'mdo', 'MD04G1079200' => 'mdo', 'MD04G1131400' => 'mdo', 'MD07G1121600' => 'mdo', 'MD07G1157300' => 'mdo', 'MD07G1171000' => 'mdo', 'MD12G1144500' => 'mdo', 'Medtr1g094610' => 'mtr', 'Medtr4g021795' => 'mtr', 'Medtr4g023760' => 'mtr', 'Medtr7g118050' => 'mtr', 'MELO3C005582.2' => 'cme', 'MELO3C005989.2' => 'cme', 'MELO3C006192.2' => 'cme', 'MELO3C009248.2' => 'cme', 'MELO3C019817.2' => 'cme', 'Migut.B01625' => 'egut', 'Migut.B01915' => 'egut', 'Migut.F01721' => 'egut', 'Migut.J00314' => 'egut', 'MSTRG.20742' => 'ama', 'MSTRG.8134' => 'ama', 'Nitab4.5_0000096g0010' => 'nta', 'Nitab4.5_0000202g0030' => 'nta', 'Nitab4.5_0000216g0370' => 'nta', 'Nitab4.5_0000457g0230' => 'nta', 'Nitab4.5_0001702g0170' => 'nta', 'Nitab4.5_0003607g0010' => 'nta', 'Nitab4.5_0004917g0020' => 'nta', 'Nitab4.5_0007059g0010' => 'nta', 'Nitab4.5_0007184g0010' => 'nta', 'Nitab4.5_0007346g0020' => 'nta', 'Nn1g00410' => 'nnu', 'Nn1g01252' => 'nnu', 'Nn2g11168' => 'nnu', 'Nn2g13403' => 'nnu', 'Nn2g13760' => 'nnu', 'Nn4g26380' => 'nnu', 'Oeu000806.2' => 'oeu', 'Oeu005788.1' => 'oeu', 'Oeu006900.3' => 'oeu', 'Oeu007797.1' => 'oeu', 'Oeu011932.1' => 'oeu', 'Oeu022739.1' => 'oeu', 'Oeu037918.1' => 'oeu', 'Oeu055490.2' => 'oeu', 'Os01g0844400' => 'osa', 'Os02g0819100' => 'osa', 'Os03g0804300' => 'osa', 'Os05g0458000' => 'osa', 'Os07g0467800' => 'osa', 'Os12g0602200' => 'osa', 'Peaxi162Scf00013g03444' => 'pax', 'Peaxi162Scf00094g01120' => 'pax', 'Peaxi162Scf00191g01211' => 'pax', 'Peaxi162Scf00238g01110' => 'pax', 'Peaxi162Scf00330g00719' => 'pax', 'Peaxi162Scf00627g00018' => 'pax', 'PGR031G2686' => 'pgr', 'PGR042G0809' => 'pgr', 'PGR142G0193' => 'pgr', 'PGSC0003DMG400011066' => 'stu', 'PGSC0003DMG400012041' => 'stu', 'PGSC0003DMG400013678' => 'stu', 'PGSC0003DMG400023477' => 'stu', 'PGSC0003DMG400025956' => 'stu', 'PGSC0003DMG401019151' => 'stu', 'Phvul.006G116400' => 'pvu', 'Phvul.007G097300' => 'pvu', 'Phvul.010G015000' => 'pvu', 'Phvul.010G083900' => 'pvu', 'Potri.001G117100' => 'ptr', 'Potri.002G147300' => 'ptr', 'Potri.003G115600' => 'ptr', 'Potri.006G087400' => 'ptr', 'Potri.010G226100' => 'ptr', 'Potri.014G069200' => 'ptr', 'Potri.014G104000' => 'ptr', 'Potri.016G100200' => 'ptr', 'Pp3c10_20450' => 'ppa', 'Pp3c1_42400' => 'ppa', 'Pp3c3_24390' => 'ppa', 'Pp3c3_2860' => 'ppa', 'PRCOL_00003193' => 'pco', 'Prupe.2G144500' => 'ppe', 'Prupe.2G195700' => 'ppe', 'Prupe.2G209800' => 'ppe', 'Prupe.5G080000' => 'ppe', 'Prupe.6G257900' => 'ppe', 'Psat3g001160' => 'psa', 'Psat6g181880' => 'psa', 'Psat7g233720' => 'psa', 'PSO063G7587' => 'pso', 'PSO339G2145' => 'pso', 'PSO339G3369' => 'pso', 'PSO478G2747' => 'pso', 'PSO513G0140' => 'pso', 'PSO782G1614' => 'pso', 'PSO782G4889' => 'pso', 'PSO782G5485' => 'pso', 'PSO801G0241' => 'pso', 'QL07p048854' => 'qlo', 'QL08p046745' => 'qlo', 'QL08p052606' => 'qlo', 'QL08p053414' => 'qlo', 'QL08p054868' => 'qlo', 'RcHm_v2.0_Chr1g0350251' => 'rch', 'RcHm_v2.0_Chr1g0360851' => 'rch', 'RcHm_v2.0_Chr1g0362791' => 'rch', 'RcHm_v2.0_Chr3g0466281' => 'rch', 'RcHm_v2.0_Chr7g0201481' => 'rch', 'Rhsim01G0148600' => 'rsi', 'Rhsim05G0194400' => 'rsi', 'Rhsim07G0000700' => 'rsi', 'Rhsim07G0000800' => 'rsi', 'Rhsim07G0027900' => 'rsi', 'Rhsim09G0149500' => 'rsi', 'RhsimUnG0186900' => 'rsi', 'Sabra01G0089900' => 'sbr', 'Sabra02G0114700' => 'sbr', 'Sabra02G0116300' => 'sbr', 'Sabra03G0080100' => 'sbr', 'Sabra08G0024300' => 'sbr', 'Sabra10G0174300' => 'sbr', 'Sabra14G0048900' => 'sbr', 'Sabra14G0076500' => 'sbr', 'SalBow5G2513' => 'sbo', 'Sc01g0002300' => 'sci', 'Sc01g0004450' => 'sci', 'Sc06g0001680' => 'sci', 'Sc23g0003580' => 'sci', 'Sed0000913' => 'sed', 'Sed0001655' => 'sed', 'Sed0007745' => 'sed', 'Sed0010951' => 'sed', 'Sed0017599' => 'sed', 'Sed0021405' => 'sed', 'Sed0022810' => 'sed', 'SEGI_07099' => 'sgi', 'SEGI_11931' => 'sgi', 'SEGI_13187' => 'sgi', 'SEGI_29958' => 'sgi', 'SEGI_36351' => 'sgi', 'SGA_v2.0_scaffold126G33770' => 'sas', 'SGA_v2.0_scaffold153G37003' => 'sas', 'SGA_v2.0_scaffold2G01359' => 'sas', 'SGA_v2.0_scaffold5G03064' => 'sas', 'SGA_v2.0_scaffold95G28903' => 'sas', 'SHI12701' => 'shi', 'SHI26410' => 'shi', 'SHI38997' => 'shi', 'SHI53759' => 'shi', 'SHI53886' => 'shi', 'SHI54714' => 'shi', 'SMO011G0041' => 'smo', 'SMO146G0251' => 'smo', 'SMO160G0004' => 'smo', 'SMO174G0057' => 'smo', 'SMO244G0089' => 'smo', 'SMO296G0011' => 'smo', 'Solyc01g091280.3' => 'sly', 'Solyc05g047610.3' => 'sly', 'Solyc05g047640.3' => 'sly', 'Solyc05g055630.3' => 'sly', 'Solyc10g018160.2' => 'sly', 'Solyc10g084820.2' => 'sly', 'Solyc10g086565.2' => 'sly', 'Sopen01g037030' => 'spe', 'Sopen05g027920' => 'spe', 'Sopen05g034070' => 'spe', 'Sopen10g007260' => 'spe', 'Sopen10g034260' => 'spe', 'Sopen10g035950' => 'spe', 'Sp3g07710' => 'spa', 'Sp4g27420' => 'spa', 'Sp5g02450' => 'spa', 'Sp6g01280' => 'spa', 'Sp6g38480' => 'spa', 'Sp7g20780' => 'spa', 'TAR374G1413' => 'tar', 'TAR623G1777' => 'tar', 'TAR629G2370' => 'tar', 'TAR633G1759' => 'tar', 'TAR636G3387' => 'tar', 'THA.LOC104802447' => 'tha', 'THA.LOC104813916' => 'tha', 'THA.LOC104816423' => 'tha', 'THA.LOC104817246' => 'tha', 'THA.LOC104825895' => 'tha', 'Thecc.01G335200' => 'tca', 'Thecc.01G377400' => 'tca', 'Thecc.03G262200' => 'tca', 'Thecc.05G036800' => 'tca', 'Thecc.10G080500' => 'tca', 'Thecc.10G080800' => 'tca', 'Thhalv10001560m.g' => 'esa', 'Thhalv10006120m.g' => 'esa', 'Thhalv10014375m.g' => 'esa', 'Thhalv10021264m.g' => 'esa', 'Thhalv10028856m.g' => 'esa', 'TPR.G1914' => 'tpr', 'TPR.G4757' => 'tpr', 'TPR.G5595' => 'tpr', 'TWI14G0952' => 'twi', 'TWI14G1307' => 'twi', 'TWI38G2143' => 'twi', 'TWI59G0826' => 'twi', 'TWI77G0527' => 'twi', 'TWI81G0150' => 'twi', 'unitig_21.g21018' => 'ugi', 'unitig_26.g9725' => 'ugi', 'unitig_744.g24653' => 'ugi', 'unitig_749.g13778' => 'ugi', 'unitig_899.g15035' => 'ugi', 'vmacro04296' => 'vma', 'vmacro04852' => 'vma', 'vmacro13404' => 'vma', 'vmacro20169' => 'vma', 'vmacro21014' => 'vma', 'VMungo0331G0237' => 'vmu', 'VMungo0331G0706' => 'vmu', 'VMungo0331G1361' => 'vmu', 'VMungo0331G1489' => 'vmu', 'VMungo0540G1037' => 'vmu', 'VMungo0720G2487' => 'vmu', 'VMungo0720G2721' => 'vmu', 'Zm00001eb086860' => 'zma', 'Zm00001eb104760' => 'zma', 'Zm00001eb148220' => 'zma', 'Zm00001eb259030' => 'zma', 'Zm00001eb289590' => 'zma', 'Zm00001eb420150' => 'zma' ) $gf_id = 'HOM05D000968' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000968' ) $data_identifier = 'HOM05D000968' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 19, 'bol' => (int) 9, 'bra' => (int) 12, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 5, 'ccan' => (int) 7, 'cde' => (int) 5, 'cfa' => (int) 8, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 4, 'dca' => (int) 5, 'din' => (int) 5, 'dzi' => (int) 12, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 25, 'fve' => (int) 5, 'gma' => (int) 9, 'ghi' => (int) 18, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 7, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 5, 'sun' => (int) 2, 'lal' => (int) 9, 'lja' => (int) 5, 'lonja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 9, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 2, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 3, 'stu' => (int) 6, 'pvu' => (int) 4, 'ptr' => (int) 8, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 3, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 1, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 5, 'sas' => (int) 5, 'shi' => (int) 6, 'smo' => (int) 6, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 3, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420150' $species_info = array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ) $local_species = 'ghi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000968', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p31690' => 'bna', 'A03p36040' => 'bna', 'A03p53730' => 'bna', 'A04p01410' => 'bna', 'A05p05420' => 'bna', 'A05p39630' => 'bna', 'A05p39640' => 'bna', 'A09p00970' => 'bna', 'A09p53060' => 'bna', 'A10p31890' => 'bna', 'Aa31LG10G15040' => 'aar', 'Aa31LG1G21090' => 'aar', 'Aa31LG1G26900' => 'aar', 'Aa31LG3G1820' => 'aar', 'Aa31LG5G1100' => 'aar', 'Aa31LG6G4740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2265' => 'aag', 'Actinidia07998' => 'ach', 'Actinidia11266' => 'ach', 'Actinidia12682' => 'ach', 'Actinidia26479' => 'ach', 'Actinidia31406' => 'ach', 'Actinidia32437' => 'ach', 'Actinidia38862' => 'ach', 'Ah.05g174230' => 'amhyb', 'Ah.05g179070' => 'amhyb', 'Ah.05g179090' => 'amhyb', 'Ah.12g059950' => 'amhyb', 'AL3G20480' => 'aly', 'AL4G44520' => 'aly', 'AL5G43110' => 'aly', 'AL6G13890' => 'aly', 'AL6G52620' => 'aly', 'AL7G30830' => 'aly', 'Aqoxy1G00899' => 'aox', 'Aqoxy5G04333' => 'aox', 'Aqoxy7G00641' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3IZ0NN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4EF6AW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W9P8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79GA3M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C43NQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFCU6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G95YVJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCHK29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LU1UG8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX91RN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGB4B1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8DA0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9H7JI' => 'arhy', 'AT3G09320' => 'ath', 'AT3G60800' => 'ath', 'AT4G00840' => 'ath', 'AT4G22750' => 'ath', 'AT5G04270' => 'ath', 'ATR0090G003' => 'atr', 'ATR0559G349' => 'atr', 'ATR0680G261' => 'atr', 'ATR0810G048' => 'atr', 'Atru.chr12.831' => 'acertr', 'Atru.chr5.303' => 'acertr', 'Atru.chr5.748' => 'acertr', 'Atru.chr8.1999' => 'acertr', 'Atru.chr9.1436' => 'acertr', 'AUR62004211' => 'cqu', 'AUR62004548' => 'cqu', 'AUR62013637' => 'cqu', 'AUR62022662' => 'cqu', 'AUR62025777' => 'cqu', 'AUR62042386' => 'cqu', 'BcaB01g02310' => 'bca', 'BcaB01g06062' => 'bca', 'BcaB02g08975' => 'bca', 'BcaB02g08980' => 'bca', 'BcaC01g04228' => 'bca', 'BcaC01g06830' => 'bca', 'BcaC02g10186' => 'bca', 'BcaC02g12214' => 'bca', 'BcaC04g24101' => 'bca', 'BcaC05g29520' => 'bca', 'BcaC05g29661' => 'bca', 'BcaC06g32130' => 'bca', 'BcaC06g32131' => 'bca', 'BcaC07g40601' => 'bca', 'BcaC07g42641' => 'bca', 'BcaNung01038' => 'bca', 'BcaNung01676' => 'bca', 'BcaNung02480' => 'bca', 'BcaNung07376' => 'bca', 'BolC3t16146H' => 'bol', 'BolC3t16637H' => 'bol', 'BolC4t22257H' => 'bol', 'BolC4t24728H' => 'bol', 'BolC5t34517H' => 'bol', 'BolC7t45703H' => 'bol', 'BolC8t51166H' => 'bol', 'BolC9t53038H' => 'bol', 'BolC9t60000H' => 'bol', 'BraA01t01345Z' => 'bra', 'BraA01t01346Z' => 'bra', 'BraA01t01348Z' => 'bra', 'BraA03t12347Z' => 'bra', 'BraA03t12775Z' => 'bra', 'BraA03t14439Z' => 'bra', 'BraA04t15860Z' => 'bra', 'BraA05t19511Z' => 'bra', 'BraA05t22746Z' => 'bra', 'BraA09t35767Z' => 'bra', 'BraA09t40732Z' => 'bra', 'BraA10t45233Z' => 'bra', 'C03p38720' => 'bna', 'C03p43680' => 'bna', 'C04p06350' => 'bna', 'C04p31800' => 'bna', 'C05p58680' => 'bna', 'C07p52110' => 'bna', 'C08p35760' => 'bna', 'C09p01050' => 'bna', 'C09p72600' => 'bna', 'CAN.G106.2' => 'can', 'CAN.G1482.1' => 'can', 'CAN.G324.12' => 'can', 'CAN.G388.20' => 'can', 'CAN.G412.7' => 'can', 'CAN.G694.32' => 'can', 'CAN.G92.12' => 'can', 'CANSAT11G2353' => 'cansat', 'CANSAT21G1398' => 'cansat', 'CANSAT56G2456' => 'cansat', 'CANSAT56G3031' => 'cansat', 'CANSAT56G4539' => 'cansat', 'CARHR083680' => 'chi', 'CARHR171190' => 'chi', 'CARHR209010' => 'chi', 'CARHR229680' => 'chi', 'CARHR249490' => 'chi', 'Carub.0003s0844' => 'cru', 'Carub.0005s2755' => 'cru', 'Carub.0006s0322' => 'cru', 'Carub.0006s3586' => 'cru', 'Carub.0007s1855' => 'cru', 'Ca_07808_v3' => 'car', 'Ca_09535_v3' => 'car', 'Ca_10548_v3' => 'car', 'Ca_19913_v3' => 'car', 'Ca_19916_v3' => 'car', 'Ca_19975_v3' => 'car', 'CBR_g22876' => 'cbr', 'CBR_g22879' => 'cbr', 'CBR_g38491' => 'cbr', 'CBR_g54185' => 'cbr', 'CBR_g54190' => 'cbr', 'Cc02_g11020' => 'ccan', 'Cc02_g23920' => 'ccan', 'Cc02_g39860' => 'ccan', 'Cc02_g39870' => 'ccan', 'Cc03_g06760' => 'ccan', 'Cc06_g02450' => 'ccan', 'Cc09_g09450' => 'ccan', 'CDE02G1959' => 'cde', 'CDE04G0600' => 'cde', 'CDE07G1996' => 'cde', 'CDE07G2078' => 'cde', 'CDE11G0611' => 'cde', 'Cfa001683' => 'cfa', 'Cfa001734' => 'cfa', 'Cfa001737' => 'cfa', 'Cfa003751' => 'cfa', 'Cfa012019' => 'cfa', 'Cfa017353' => 'cfa', 'Cfa017732' => 'cfa', 'Cfa022464' => 'cfa', 'Ciclev10012400m.g' => 'ccl', 'Ciclev10021242m.g' => 'ccl', 'Ciclev10021302m.g' => 'ccl', 'Ciclev10021463m.g' => 'ccl', 'Ciclev10032359m.g' => 'ccl', 'CiPaw.01G081000' => 'cil', 'CiPaw.01G262500' => 'cil', 'CiPaw.01G269800' => 'cil', 'CiPaw.02G168400' => 'cil', 'CiPaw.05G119500' => 'cil', 'CiPaw.11G147300' => 'cil', 'ClCG01G003630' => 'cla', 'ClCG05G000510' => 'cla', 'ClCG05G002300' => 'cla', 'ClCG08G007650' => 'cla', 'ClCG10G021250' => 'cla', 'COL.COLO4_06218' => 'col', 'COL.COLO4_12538' => 'col', 'COL.COLO4_14775' => 'col', 'COL.COLO4_23875' => 'col', 'Cpa.g.sc141.16' => 'cpa', 'Cpa.g.sc169.16' => 'cpa', 'Cpa.g.sc244.4' => 'cpa', 'Cpa.g.sc244.5' => 'cpa', 'Cpa.g.sc29.87' => 'cpa', 'Cpa.g.sc53.115' => 'cpa', 'Cre03.g207502' => 'cre', 'Cre06.g277000' => 'cre', 'Cre09.g394050' => 'cre', 'CsaV3_3G007680' => 'csa', 'CsaV3_3G009710' => 'csa', 'CsaV3_3G034790' => 'csa', 'CsaV3_5G003750' => 'csa', 'CsaV3_6G036620' => 'csa', 'CSS0002288' => 'camsi', 'CSS0011250' => 'camsi', 'CSS0021619' => 'camsi', 'CSS0046701' => 'camsi', 'DCAR_006420' => 'dca', 'DCAR_006865' => 'dca', 'DCAR_008558' => 'dca', 'DCAR_028754' => 'dca', 'DCAR_028755' => 'dca', 'Dinv31218' => 'din', 'Dinv32371' => 'din', 'Dinv34250' => 'din', 'Dinv37156' => 'din', 'Dinv43704' => 'din', 'Duzib093G1811' => 'dzi', 'Duzib106G1622' => 'dzi', 'Duzib114G0504' => 'dzi', 'Duzib128G0338' => 'dzi', 'Duzib128G1577' => 'dzi', 'Duzib133G0104' => 'dzi', 'Duzib133G1080' => 'dzi', 'Duzib138G0324' => 'dzi', 'Duzib138G0394' => 'dzi', 'Duzib205G0122' => 'dzi', 'Duzib268G1020' => 'dzi', 'Duzib268G1359' => 'dzi', 'ECA232G3929' => 'eca', 'ECA236G2210' => 'eca', 'ECA236G2287' => 'eca', 'ECA240G4568' => 'eca', 'ECA247G0894' => 'eca', 'EL10Ac1g00200' => 'bvu', 'EL10Ac1g00886' => 'bvu', 'EL10As1g23091' => 'bvu', 'EL10As1g23092' => 'bvu', 'Eucgr.A01284' => 'egr', 'Eucgr.A01285' => 'egr', 'Eucgr.D02456' => 'egr', 'Eucgr.E00018' => 'egr', 'Eucgr.E01439' => 'egr', 'Eucgr.G02859' => 'egr', 'FAN01G0168' => 'fan', 'FAN01G0453' => 'fan', 'FAN01G2761' => 'fan', 'FAN02G1239' => 'fan', 'FAN03G0645' => 'fan', 'FAN03G2707' => 'fan', 'FAN03G2978' => 'fan', 'FAN04G0227' => 'fan', 'FAN06G0091' => 'fan', 'FAN06G1418' => 'fan', 'FAN06G1512' => 'fan', 'FAN06G1986' => 'fan', 'FAN06G2905' => 'fan', 'FAN06G4325' => 'fan', 'FAN08G0033' => 'fan', 'FAN09G0642' => 'fan', 'FAN10G1763' => 'fan', 'FAN10G2026' => 'fan', 'FAN10G2513' => 'fan', 'FAN10G3402' => 'fan', 'FAN10G3564' => 'fan', 'FAN10G3987' => 'fan', 'FAN13G1490' => 'fan', 'FAN14G5857' => 'fan', 'FAN18G1188' => 'fan', 'FvH4_5g00750' => 'fve', 'FvH4_6g13410' => 'fve', 'FvH4_7g11740' => 'fve', 'FvH4_7g17410' => 'fve', 'FvH4_7g18860' => 'fve', 'Glyma.01G099100' => 'gma', 'Glyma.01G142300' => 'gma', 'Glyma.03G025500' => 'gma', 'Glyma.03G069700' => 'gma', 'Glyma.03G260000' => 'gma', 'Glyma.09G269800' => 'gma', 'Glyma.10G208700' => 'gma', 'Glyma.18G220400' => 'gma', 'Glyma.20G182000' => 'gma', 'Gohir.A01G221726' => 'ghi', 'Gohir.A07G134600' => 'ghi', 'Gohir.A07G146000' => 'ghi', 'Gohir.A08G173900' => 'ghi', 'Gohir.A09G194900' => 'ghi', 'Gohir.A10G204100' => 'ghi', 'Gohir.A11G080600' => 'ghi', 'Gohir.A11G327500' => 'ghi', 'Gohir.A12G101800' => 'ghi', 'Gohir.D01G211200' => 'ghi', 'Gohir.D07G139200' => 'ghi', 'Gohir.D07G152100' => 'ghi', 'Gohir.D08G192600' => 'ghi', 'Gohir.D09G189200' => 'ghi', 'Gohir.D10G212000' => 'ghi', 'Gohir.D11G085200' => 'ghi', 'Gohir.D11G346400' => 'ghi', 'Gohir.D12G104800' => 'ghi', 'Gorai.001G151300' => 'gra', 'Gorai.001G174100' => 'gra', 'Gorai.002G257000' => 'gra', 'Gorai.004G202600' => 'gra', 'Gorai.007G090900' => 'gra', 'Gorai.007G376700' => 'gra', 'Gorai.008G114100' => 'gra', 'Gorai.011G237900' => 'gra', 'GSVIVG01005450001' => 'vvi', 'GSVIVG01016232001' => 'vvi', 'GSVIVG01026157001' => 'vvi', 'GSVIVG01027419001' => 'vvi', 'GSVIVG01027631001' => 'vvi', 'GSVIVG01034143001' => 'vvi', 'HanXRQChr03g0093921' => 'han', 'HanXRQChr04g0120001' => 'han', 'HanXRQChr04g0122561' => 'han', 'HanXRQChr09g0246851' => 'han', 'HanXRQChr10g0293311' => 'han', 'HanXRQChr13g0425231' => 'han', 'HanXRQChr16g0532571' => 'han', 'Haze_09050' => 'cav', 'Haze_15715' => 'cav', 'Haze_15716' => 'cav', 'Haze_16803' => 'cav', 'Haze_16850' => 'cav', 'Hma1.2p1_0301F.1_g118655' => 'hma', 'Hma1.2p1_0309F.1_g120590' => 'hma', 'Hma1.2p1_0936F.1_g238900' => 'hma', 'Hma1.2p1_3552F.1_g336740' => 'hma', 'HPP92_003520' => 'vpl', 'HPP92_006628' => 'vpl', 'HPP92_006645' => 'vpl', 'HPP92_014669' => 'vpl', 'HPP92_015077' => 'vpl', 'Hund16742' => 'sun', 'Hund17022' => 'sun', 'Lalb_Chr02g0152131' => 'lal', 'Lalb_Chr05g0225371' => 'lal', 'Lalb_Chr07g0189841' => 'lal', 'Lalb_Chr07g0192961' => 'lal', 'Lalb_Chr12g0208221' => 'lal', 'Lalb_Chr13g0291211' => 'lal', 'Lalb_Chr13g0291781' => 'lal', 'Lalb_Chr18g0044651' => 'lal', 'Lalb_Chr21g0313731' => 'lal', 'Lj1g0022533' => 'lja', 'Lj2A18T50' => 'lonja', 'Lj2A92G93' => 'lonja', 'Lj3A965T73' => 'lonja', 'Lj3g0000673' => 'lja', 'Lj3g0002666' => 'lja', 'Lj4g0016985' => 'lja', 'Lj5g0003625' => 'lja', 'Lj7A529G36' => 'lonja', 'Lj9A569T49' => 'lonja', 'Lj9A604T63' => 'lonja', 'Lsat_1_v5_gn_3_132060' => 'lsa', 'Lsat_1_v5_gn_4_68941' => 'lsa', 'Lsat_1_v5_gn_5_95580' => 'lsa', 'Lsat_1_v5_gn_7_161' => 'lsa', 'Lsat_1_v5_gn_7_7041' => 'lsa', 'Lsat_1_v5_gn_9_33481' => 'lsa', 'Lsat_1_v5_gn_9_68260' => 'lsa', 'Manes.01G073100' => 'mes', 'Manes.01G266300' => 'mes', 'Manes.02G033300' => 'mes', 'Manes.05G017900' => 'mes', 'Manes.05G046100' => 'mes', 'Manes.08G080900' => 'mes', 'Manes.10G049400' => 'mes', 'Mapoly0009s0186' => 'mpo', 'Mapoly0036s0118' => 'mpo', 'Mapoly0101s0046' => 'mpo', 'MBI04_g30218_MAGBIO' => 'mbi', 'MBI04_g35564_MAGBIO' => 'mbi', 'MBI12_g34011_MAGBIO' => 'mbi', 'MBI14_g04655_MAGBIO' => 'mbi', 'MCO07G653' => 'mco', 'MCO10G173' => 'mco', 'MD01G1087100' => 'mdo', 'MD01G1104200' => 'mdo', 'MD02G1205100' => 'mdo', 'MD04G1079200' => 'mdo', 'MD04G1131400' => 'mdo', 'MD07G1121600' => 'mdo', 'MD07G1157300' => 'mdo', 'MD07G1171000' => 'mdo', 'MD12G1144500' => 'mdo', 'Medtr1g094610' => 'mtr', 'Medtr4g021795' => 'mtr', 'Medtr4g023760' => 'mtr', 'Medtr7g118050' => 'mtr', 'MELO3C005582.2' => 'cme', 'MELO3C005989.2' => 'cme', 'MELO3C006192.2' => 'cme', 'MELO3C009248.2' => 'cme', 'MELO3C019817.2' => 'cme', 'Migut.B01625' => 'egut', 'Migut.B01915' => 'egut', 'Migut.F01721' => 'egut', 'Migut.J00314' => 'egut', 'MSTRG.20742' => 'ama', 'MSTRG.8134' => 'ama', 'Nitab4.5_0000096g0010' => 'nta', 'Nitab4.5_0000202g0030' => 'nta', 'Nitab4.5_0000216g0370' => 'nta', 'Nitab4.5_0000457g0230' => 'nta', 'Nitab4.5_0001702g0170' => 'nta', 'Nitab4.5_0003607g0010' => 'nta', 'Nitab4.5_0004917g0020' => 'nta', 'Nitab4.5_0007059g0010' => 'nta', 'Nitab4.5_0007184g0010' => 'nta', 'Nitab4.5_0007346g0020' => 'nta', 'Nn1g00410' => 'nnu', 'Nn1g01252' => 'nnu', 'Nn2g11168' => 'nnu', 'Nn2g13403' => 'nnu', 'Nn2g13760' => 'nnu', 'Nn4g26380' => 'nnu', 'Oeu000806.2' => 'oeu', 'Oeu005788.1' => 'oeu', 'Oeu006900.3' => 'oeu', 'Oeu007797.1' => 'oeu', 'Oeu011932.1' => 'oeu', 'Oeu022739.1' => 'oeu', 'Oeu037918.1' => 'oeu', 'Oeu055490.2' => 'oeu', 'Os01g0844400' => 'osa', 'Os02g0819100' => 'osa', 'Os03g0804300' => 'osa', 'Os05g0458000' => 'osa', 'Os07g0467800' => 'osa', 'Os12g0602200' => 'osa', 'Peaxi162Scf00013g03444' => 'pax', 'Peaxi162Scf00094g01120' => 'pax', 'Peaxi162Scf00191g01211' => 'pax', 'Peaxi162Scf00238g01110' => 'pax', 'Peaxi162Scf00330g00719' => 'pax', 'Peaxi162Scf00627g00018' => 'pax', 'PGR031G2686' => 'pgr', 'PGR042G0809' => 'pgr', 'PGR142G0193' => 'pgr', 'PGSC0003DMG400011066' => 'stu', 'PGSC0003DMG400012041' => 'stu', 'PGSC0003DMG400013678' => 'stu', 'PGSC0003DMG400023477' => 'stu', 'PGSC0003DMG400025956' => 'stu', 'PGSC0003DMG401019151' => 'stu', 'Phvul.006G116400' => 'pvu', 'Phvul.007G097300' => 'pvu', 'Phvul.010G015000' => 'pvu', 'Phvul.010G083900' => 'pvu', 'Potri.001G117100' => 'ptr', 'Potri.002G147300' => 'ptr', 'Potri.003G115600' => 'ptr', 'Potri.006G087400' => 'ptr', 'Potri.010G226100' => 'ptr', 'Potri.014G069200' => 'ptr', 'Potri.014G104000' => 'ptr', 'Potri.016G100200' => 'ptr', 'Pp3c10_20450' => 'ppa', 'Pp3c1_42400' => 'ppa', 'Pp3c3_24390' => 'ppa', 'Pp3c3_2860' => 'ppa', 'PRCOL_00003193' => 'pco', 'Prupe.2G144500' => 'ppe', 'Prupe.2G195700' => 'ppe', 'Prupe.2G209800' => 'ppe', 'Prupe.5G080000' => 'ppe', 'Prupe.6G257900' => 'ppe', 'Psat3g001160' => 'psa', 'Psat6g181880' => 'psa', 'Psat7g233720' => 'psa', 'PSO063G7587' => 'pso', 'PSO339G2145' => 'pso', 'PSO339G3369' => 'pso', 'PSO478G2747' => 'pso', 'PSO513G0140' => 'pso', 'PSO782G1614' => 'pso', 'PSO782G4889' => 'pso', 'PSO782G5485' => 'pso', 'PSO801G0241' => 'pso', 'QL07p048854' => 'qlo', 'QL08p046745' => 'qlo', 'QL08p052606' => 'qlo', 'QL08p053414' => 'qlo', 'QL08p054868' => 'qlo', 'RcHm_v2.0_Chr1g0350251' => 'rch', 'RcHm_v2.0_Chr1g0360851' => 'rch', 'RcHm_v2.0_Chr1g0362791' => 'rch', 'RcHm_v2.0_Chr3g0466281' => 'rch', 'RcHm_v2.0_Chr7g0201481' => 'rch', 'Rhsim01G0148600' => 'rsi', 'Rhsim05G0194400' => 'rsi', 'Rhsim07G0000700' => 'rsi', 'Rhsim07G0000800' => 'rsi', 'Rhsim07G0027900' => 'rsi', 'Rhsim09G0149500' => 'rsi', 'RhsimUnG0186900' => 'rsi', 'Sabra01G0089900' => 'sbr', 'Sabra02G0114700' => 'sbr', 'Sabra02G0116300' => 'sbr', 'Sabra03G0080100' => 'sbr', 'Sabra08G0024300' => 'sbr', 'Sabra10G0174300' => 'sbr', 'Sabra14G0048900' => 'sbr', 'Sabra14G0076500' => 'sbr', 'SalBow5G2513' => 'sbo', 'Sc01g0002300' => 'sci', 'Sc01g0004450' => 'sci', 'Sc06g0001680' => 'sci', 'Sc23g0003580' => 'sci', 'Sed0000913' => 'sed', 'Sed0001655' => 'sed', 'Sed0007745' => 'sed', 'Sed0010951' => 'sed', 'Sed0017599' => 'sed', 'Sed0021405' => 'sed', 'Sed0022810' => 'sed', 'SEGI_07099' => 'sgi', 'SEGI_11931' => 'sgi', 'SEGI_13187' => 'sgi', 'SEGI_29958' => 'sgi', 'SEGI_36351' => 'sgi', 'SGA_v2.0_scaffold126G33770' => 'sas', 'SGA_v2.0_scaffold153G37003' => 'sas', 'SGA_v2.0_scaffold2G01359' => 'sas', 'SGA_v2.0_scaffold5G03064' => 'sas', 'SGA_v2.0_scaffold95G28903' => 'sas', 'SHI12701' => 'shi', 'SHI26410' => 'shi', 'SHI38997' => 'shi', 'SHI53759' => 'shi', 'SHI53886' => 'shi', 'SHI54714' => 'shi', 'SMO011G0041' => 'smo', 'SMO146G0251' => 'smo', 'SMO160G0004' => 'smo', 'SMO174G0057' => 'smo', 'SMO244G0089' => 'smo', 'SMO296G0011' => 'smo', 'Solyc01g091280.3' => 'sly', 'Solyc05g047610.3' => 'sly', 'Solyc05g047640.3' => 'sly', 'Solyc05g055630.3' => 'sly', 'Solyc10g018160.2' => 'sly', 'Solyc10g084820.2' => 'sly', 'Solyc10g086565.2' => 'sly', 'Sopen01g037030' => 'spe', 'Sopen05g027920' => 'spe', 'Sopen05g034070' => 'spe', 'Sopen10g007260' => 'spe', 'Sopen10g034260' => 'spe', 'Sopen10g035950' => 'spe', 'Sp3g07710' => 'spa', 'Sp4g27420' => 'spa', 'Sp5g02450' => 'spa', 'Sp6g01280' => 'spa', 'Sp6g38480' => 'spa', 'Sp7g20780' => 'spa', 'TAR374G1413' => 'tar', 'TAR623G1777' => 'tar', 'TAR629G2370' => 'tar', 'TAR633G1759' => 'tar', 'TAR636G3387' => 'tar', 'THA.LOC104802447' => 'tha', 'THA.LOC104813916' => 'tha', 'THA.LOC104816423' => 'tha', 'THA.LOC104817246' => 'tha', 'THA.LOC104825895' => 'tha', 'Thecc.01G335200' => 'tca', 'Thecc.01G377400' => 'tca', 'Thecc.03G262200' => 'tca', 'Thecc.05G036800' => 'tca', 'Thecc.10G080500' => 'tca', 'Thecc.10G080800' => 'tca', 'Thhalv10001560m.g' => 'esa', 'Thhalv10006120m.g' => 'esa', 'Thhalv10014375m.g' => 'esa', 'Thhalv10021264m.g' => 'esa', 'Thhalv10028856m.g' => 'esa', 'TPR.G1914' => 'tpr', 'TPR.G4757' => 'tpr', 'TPR.G5595' => 'tpr', 'TWI14G0952' => 'twi', 'TWI14G1307' => 'twi', 'TWI38G2143' => 'twi', 'TWI59G0826' => 'twi', 'TWI77G0527' => 'twi', 'TWI81G0150' => 'twi', 'unitig_21.g21018' => 'ugi', 'unitig_26.g9725' => 'ugi', 'unitig_744.g24653' => 'ugi', 'unitig_749.g13778' => 'ugi', 'unitig_899.g15035' => 'ugi', 'vmacro04296' => 'vma', 'vmacro04852' => 'vma', 'vmacro13404' => 'vma', 'vmacro20169' => 'vma', 'vmacro21014' => 'vma', 'VMungo0331G0237' => 'vmu', 'VMungo0331G0706' => 'vmu', 'VMungo0331G1361' => 'vmu', 'VMungo0331G1489' => 'vmu', 'VMungo0540G1037' => 'vmu', 'VMungo0720G2487' => 'vmu', 'VMungo0720G2721' => 'vmu', 'Zm00001eb086860' => 'zma', 'Zm00001eb104760' => 'zma', 'Zm00001eb148220' => 'zma', 'Zm00001eb259030' => 'zma', 'Zm00001eb289590' => 'zma', 'Zm00001eb420150' => 'zma' ), 'gf_id' => 'HOM05D000968', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000968' ), 'data_identifier' => 'HOM05D000968', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000968', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p31690' => 'bna', 'A03p36040' => 'bna', 'A03p53730' => 'bna', 'A04p01410' => 'bna', 'A05p05420' => 'bna', 'A05p39630' => 'bna', 'A05p39640' => 'bna', 'A09p00970' => 'bna', 'A09p53060' => 'bna', 'A10p31890' => 'bna', 'Aa31LG10G15040' => 'aar', 'Aa31LG1G21090' => 'aar', 'Aa31LG1G26900' => 'aar', 'Aa31LG3G1820' => 'aar', 'Aa31LG5G1100' => 'aar', 'Aa31LG6G4740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2265' => 'aag', 'Actinidia07998' => 'ach', 'Actinidia11266' => 'ach', 'Actinidia12682' => 'ach', 'Actinidia26479' => 'ach', 'Actinidia31406' => 'ach', 'Actinidia32437' => 'ach', 'Actinidia38862' => 'ach', 'Ah.05g174230' => 'amhyb', 'Ah.05g179070' => 'amhyb', 'Ah.05g179090' => 'amhyb', 'Ah.12g059950' => 'amhyb', 'AL3G20480' => 'aly', 'AL4G44520' => 'aly', 'AL5G43110' => 'aly', 'AL6G13890' => 'aly', 'AL6G52620' => 'aly', 'AL7G30830' => 'aly', 'Aqoxy1G00899' => 'aox', 'Aqoxy5G04333' => 'aox', 'Aqoxy7G00641' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3IZ0NN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4EF6AW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W9P8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79GA3M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C43NQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFCU6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G95YVJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCHK29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LU1UG8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX91RN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGB4B1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8DA0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9H7JI' => 'arhy', 'AT3G09320' => 'ath', 'AT3G60800' => 'ath', 'AT4G00840' => 'ath', 'AT4G22750' => 'ath', 'AT5G04270' => 'ath', 'ATR0090G003' => 'atr', 'ATR0559G349' => 'atr', 'ATR0680G261' => 'atr', 'ATR0810G048' => 'atr', 'Atru.chr12.831' => 'acertr', 'Atru.chr5.303' => 'acertr', 'Atru.chr5.748' => 'acertr', 'Atru.chr8.1999' => 'acertr', 'Atru.chr9.1436' => 'acertr', 'AUR62004211' => 'cqu', 'AUR62004548' => 'cqu', 'AUR62013637' => 'cqu', 'AUR62022662' => 'cqu', 'AUR62025777' => 'cqu', 'AUR62042386' => 'cqu', 'BcaB01g02310' => 'bca', 'BcaB01g06062' => 'bca', 'BcaB02g08975' => 'bca', 'BcaB02g08980' => 'bca', 'BcaC01g04228' => 'bca', 'BcaC01g06830' => 'bca', 'BcaC02g10186' => 'bca', 'BcaC02g12214' => 'bca', 'BcaC04g24101' => 'bca', 'BcaC05g29520' => 'bca', 'BcaC05g29661' => 'bca', 'BcaC06g32130' => 'bca', 'BcaC06g32131' => 'bca', 'BcaC07g40601' => 'bca', 'BcaC07g42641' => 'bca', 'BcaNung01038' => 'bca', 'BcaNung01676' => 'bca', 'BcaNung02480' => 'bca', 'BcaNung07376' => 'bca', 'BolC3t16146H' => 'bol', 'BolC3t16637H' => 'bol', 'BolC4t22257H' => 'bol', 'BolC4t24728H' => 'bol', 'BolC5t34517H' => 'bol', 'BolC7t45703H' => 'bol', 'BolC8t51166H' => 'bol', 'BolC9t53038H' => 'bol', 'BolC9t60000H' => 'bol', 'BraA01t01345Z' => 'bra', 'BraA01t01346Z' => 'bra', 'BraA01t01348Z' => 'bra', 'BraA03t12347Z' => 'bra', 'BraA03t12775Z' => 'bra', 'BraA03t14439Z' => 'bra', 'BraA04t15860Z' => 'bra', 'BraA05t19511Z' => 'bra', 'BraA05t22746Z' => 'bra', 'BraA09t35767Z' => 'bra', 'BraA09t40732Z' => 'bra', 'BraA10t45233Z' => 'bra', 'C03p38720' => 'bna', 'C03p43680' => 'bna', 'C04p06350' => 'bna', 'C04p31800' => 'bna', 'C05p58680' => 'bna', 'C07p52110' => 'bna', 'C08p35760' => 'bna', 'C09p01050' => 'bna', 'C09p72600' => 'bna', 'CAN.G106.2' => 'can', 'CAN.G1482.1' => 'can', 'CAN.G324.12' => 'can', 'CAN.G388.20' => 'can', 'CAN.G412.7' => 'can', 'CAN.G694.32' => 'can', 'CAN.G92.12' => 'can', 'CANSAT11G2353' => 'cansat', 'CANSAT21G1398' => 'cansat', 'CANSAT56G2456' => 'cansat', 'CANSAT56G3031' => 'cansat', 'CANSAT56G4539' => 'cansat', 'CARHR083680' => 'chi', 'CARHR171190' => 'chi', 'CARHR209010' => 'chi', 'CARHR229680' => 'chi', 'CARHR249490' => 'chi', 'Carub.0003s0844' => 'cru', 'Carub.0005s2755' => 'cru', 'Carub.0006s0322' => 'cru', 'Carub.0006s3586' => 'cru', 'Carub.0007s1855' => 'cru', 'Ca_07808_v3' => 'car', 'Ca_09535_v3' => 'car', 'Ca_10548_v3' => 'car', 'Ca_19913_v3' => 'car', 'Ca_19916_v3' => 'car', 'Ca_19975_v3' => 'car', 'CBR_g22876' => 'cbr', 'CBR_g22879' => 'cbr', 'CBR_g38491' => 'cbr', 'CBR_g54185' => 'cbr', 'CBR_g54190' => 'cbr', 'Cc02_g11020' => 'ccan', 'Cc02_g23920' => 'ccan', 'Cc02_g39860' => 'ccan', 'Cc02_g39870' => 'ccan', 'Cc03_g06760' => 'ccan', 'Cc06_g02450' => 'ccan', 'Cc09_g09450' => 'ccan', 'CDE02G1959' => 'cde', 'CDE04G0600' => 'cde', 'CDE07G1996' => 'cde', 'CDE07G2078' => 'cde', 'CDE11G0611' => 'cde', 'Cfa001683' => 'cfa', 'Cfa001734' => 'cfa', 'Cfa001737' => 'cfa', 'Cfa003751' => 'cfa', 'Cfa012019' => 'cfa', 'Cfa017353' => 'cfa', 'Cfa017732' => 'cfa', 'Cfa022464' => 'cfa', 'Ciclev10012400m.g' => 'ccl', 'Ciclev10021242m.g' => 'ccl', 'Ciclev10021302m.g' => 'ccl', 'Ciclev10021463m.g' => 'ccl', 'Ciclev10032359m.g' => 'ccl', 'CiPaw.01G081000' => 'cil', 'CiPaw.01G262500' => 'cil', 'CiPaw.01G269800' => 'cil', 'CiPaw.02G168400' => 'cil', 'CiPaw.05G119500' => 'cil', 'CiPaw.11G147300' => 'cil', 'ClCG01G003630' => 'cla', 'ClCG05G000510' => 'cla', 'ClCG05G002300' => 'cla', 'ClCG08G007650' => 'cla', 'ClCG10G021250' => 'cla', 'COL.COLO4_06218' => 'col', 'COL.COLO4_12538' => 'col', 'COL.COLO4_14775' => 'col', 'COL.COLO4_23875' => 'col', 'Cpa.g.sc141.16' => 'cpa', 'Cpa.g.sc169.16' => 'cpa', 'Cpa.g.sc244.4' => 'cpa', 'Cpa.g.sc244.5' => 'cpa', 'Cpa.g.sc29.87' => 'cpa', 'Cpa.g.sc53.115' => 'cpa', 'Cre03.g207502' => 'cre', 'Cre06.g277000' => 'cre', 'Cre09.g394050' => 'cre', 'CsaV3_3G007680' => 'csa', 'CsaV3_3G009710' => 'csa', 'CsaV3_3G034790' => 'csa', 'CsaV3_5G003750' => 'csa', 'CsaV3_6G036620' => 'csa', 'CSS0002288' => 'camsi', 'CSS0011250' => 'camsi', 'CSS0021619' => 'camsi', 'CSS0046701' => 'camsi', 'DCAR_006420' => 'dca', 'DCAR_006865' => 'dca', 'DCAR_008558' => 'dca', 'DCAR_028754' => 'dca', 'DCAR_028755' => 'dca', 'Dinv31218' => 'din', 'Dinv32371' => 'din', 'Dinv34250' => 'din', 'Dinv37156' => 'din', 'Dinv43704' => 'din', 'Duzib093G1811' => 'dzi', 'Duzib106G1622' => 'dzi', 'Duzib114G0504' => 'dzi', 'Duzib128G0338' => 'dzi', 'Duzib128G1577' => 'dzi', 'Duzib133G0104' => 'dzi', 'Duzib133G1080' => 'dzi', 'Duzib138G0324' => 'dzi', 'Duzib138G0394' => 'dzi', 'Duzib205G0122' => 'dzi', 'Duzib268G1020' => 'dzi', 'Duzib268G1359' => 'dzi', 'ECA232G3929' => 'eca', 'ECA236G2210' => 'eca', 'ECA236G2287' => 'eca', 'ECA240G4568' => 'eca', 'ECA247G0894' => 'eca', 'EL10Ac1g00200' => 'bvu', 'EL10Ac1g00886' => 'bvu', 'EL10As1g23091' => 'bvu', 'EL10As1g23092' => 'bvu', 'Eucgr.A01284' => 'egr', 'Eucgr.A01285' => 'egr', 'Eucgr.D02456' => 'egr', 'Eucgr.E00018' => 'egr', 'Eucgr.E01439' => 'egr', 'Eucgr.G02859' => 'egr', 'FAN01G0168' => 'fan', 'FAN01G0453' => 'fan', 'FAN01G2761' => 'fan', 'FAN02G1239' => 'fan', 'FAN03G0645' => 'fan', 'FAN03G2707' => 'fan', 'FAN03G2978' => 'fan', 'FAN04G0227' => 'fan', 'FAN06G0091' => 'fan', 'FAN06G1418' => 'fan', 'FAN06G1512' => 'fan', 'FAN06G1986' => 'fan', 'FAN06G2905' => 'fan', 'FAN06G4325' => 'fan', 'FAN08G0033' => 'fan', 'FAN09G0642' => 'fan', 'FAN10G1763' => 'fan', 'FAN10G2026' => 'fan', 'FAN10G2513' => 'fan', 'FAN10G3402' => 'fan', 'FAN10G3564' => 'fan', 'FAN10G3987' => 'fan', 'FAN13G1490' => 'fan', 'FAN14G5857' => 'fan', 'FAN18G1188' => 'fan', 'FvH4_5g00750' => 'fve', 'FvH4_6g13410' => 'fve', 'FvH4_7g11740' => 'fve', 'FvH4_7g17410' => 'fve', 'FvH4_7g18860' => 'fve', 'Glyma.01G099100' => 'gma', 'Glyma.01G142300' => 'gma', 'Glyma.03G025500' => 'gma', 'Glyma.03G069700' => 'gma', 'Glyma.03G260000' => 'gma', 'Glyma.09G269800' => 'gma', 'Glyma.10G208700' => 'gma', 'Glyma.18G220400' => 'gma', 'Glyma.20G182000' => 'gma', 'Gohir.A01G221726' => 'ghi', 'Gohir.A07G134600' => 'ghi', 'Gohir.A07G146000' => 'ghi', 'Gohir.A08G173900' => 'ghi', 'Gohir.A09G194900' => 'ghi', 'Gohir.A10G204100' => 'ghi', 'Gohir.A11G080600' => 'ghi', 'Gohir.A11G327500' => 'ghi', 'Gohir.A12G101800' => 'ghi', 'Gohir.D01G211200' => 'ghi', 'Gohir.D07G139200' => 'ghi', 'Gohir.D07G152100' => 'ghi', 'Gohir.D08G192600' => 'ghi', 'Gohir.D09G189200' => 'ghi', 'Gohir.D10G212000' => 'ghi', 'Gohir.D11G085200' => 'ghi', 'Gohir.D11G346400' => 'ghi', 'Gohir.D12G104800' => 'ghi', 'Gorai.001G151300' => 'gra', 'Gorai.001G174100' => 'gra', 'Gorai.002G257000' => 'gra', 'Gorai.004G202600' => 'gra', 'Gorai.007G090900' => 'gra', 'Gorai.007G376700' => 'gra', 'Gorai.008G114100' => 'gra', 'Gorai.011G237900' => 'gra', 'GSVIVG01005450001' => 'vvi', 'GSVIVG01016232001' => 'vvi', 'GSVIVG01026157001' => 'vvi', 'GSVIVG01027419001' => 'vvi', 'GSVIVG01027631001' => 'vvi', 'GSVIVG01034143001' => 'vvi', 'HanXRQChr03g0093921' => 'han', 'HanXRQChr04g0120001' => 'han', 'HanXRQChr04g0122561' => 'han', 'HanXRQChr09g0246851' => 'han', 'HanXRQChr10g0293311' => 'han', 'HanXRQChr13g0425231' => 'han', 'HanXRQChr16g0532571' => 'han', 'Haze_09050' => 'cav', 'Haze_15715' => 'cav', 'Haze_15716' => 'cav', 'Haze_16803' => 'cav', 'Haze_16850' => 'cav', 'Hma1.2p1_0301F.1_g118655' => 'hma', 'Hma1.2p1_0309F.1_g120590' => 'hma', 'Hma1.2p1_0936F.1_g238900' => 'hma', 'Hma1.2p1_3552F.1_g336740' => 'hma', 'HPP92_003520' => 'vpl', 'HPP92_006628' => 'vpl', 'HPP92_006645' => 'vpl', 'HPP92_014669' => 'vpl', 'HPP92_015077' => 'vpl', 'Hund16742' => 'sun', 'Hund17022' => 'sun', 'Lalb_Chr02g0152131' => 'lal', 'Lalb_Chr05g0225371' => 'lal', 'Lalb_Chr07g0189841' => 'lal', 'Lalb_Chr07g0192961' => 'lal', 'Lalb_Chr12g0208221' => 'lal', 'Lalb_Chr13g0291211' => 'lal', 'Lalb_Chr13g0291781' => 'lal', 'Lalb_Chr18g0044651' => 'lal', 'Lalb_Chr21g0313731' => 'lal', 'Lj1g0022533' => 'lja', 'Lj2A18T50' => 'lonja', 'Lj2A92G93' => 'lonja', 'Lj3A965T73' => 'lonja', 'Lj3g0000673' => 'lja', 'Lj3g0002666' => 'lja', 'Lj4g0016985' => 'lja', 'Lj5g0003625' => 'lja', 'Lj7A529G36' => 'lonja', 'Lj9A569T49' => 'lonja', 'Lj9A604T63' => 'lonja', 'Lsat_1_v5_gn_3_132060' => 'lsa', 'Lsat_1_v5_gn_4_68941' => 'lsa', 'Lsat_1_v5_gn_5_95580' => 'lsa', 'Lsat_1_v5_gn_7_161' => 'lsa', 'Lsat_1_v5_gn_7_7041' => 'lsa', 'Lsat_1_v5_gn_9_33481' => 'lsa', 'Lsat_1_v5_gn_9_68260' => 'lsa', 'Manes.01G073100' => 'mes', 'Manes.01G266300' => 'mes', 'Manes.02G033300' => 'mes', 'Manes.05G017900' => 'mes', 'Manes.05G046100' => 'mes', 'Manes.08G080900' => 'mes', 'Manes.10G049400' => 'mes', 'Mapoly0009s0186' => 'mpo', 'Mapoly0036s0118' => 'mpo', 'Mapoly0101s0046' => 'mpo', 'MBI04_g30218_MAGBIO' => 'mbi', 'MBI04_g35564_MAGBIO' => 'mbi', 'MBI12_g34011_MAGBIO' => 'mbi', 'MBI14_g04655_MAGBIO' => 'mbi', 'MCO07G653' => 'mco', 'MCO10G173' => 'mco', 'MD01G1087100' => 'mdo', 'MD01G1104200' => 'mdo', 'MD02G1205100' => 'mdo', 'MD04G1079200' => 'mdo', 'MD04G1131400' => 'mdo', 'MD07G1121600' => 'mdo', 'MD07G1157300' => 'mdo', 'MD07G1171000' => 'mdo', 'MD12G1144500' => 'mdo', 'Medtr1g094610' => 'mtr', 'Medtr4g021795' => 'mtr', 'Medtr4g023760' => 'mtr', 'Medtr7g118050' => 'mtr', 'MELO3C005582.2' => 'cme', 'MELO3C005989.2' => 'cme', 'MELO3C006192.2' => 'cme', 'MELO3C009248.2' => 'cme', 'MELO3C019817.2' => 'cme', 'Migut.B01625' => 'egut', 'Migut.B01915' => 'egut', 'Migut.F01721' => 'egut', 'Migut.J00314' => 'egut', 'MSTRG.20742' => 'ama', 'MSTRG.8134' => 'ama', 'Nitab4.5_0000096g0010' => 'nta', 'Nitab4.5_0000202g0030' => 'nta', 'Nitab4.5_0000216g0370' => 'nta', 'Nitab4.5_0000457g0230' => 'nta', 'Nitab4.5_0001702g0170' => 'nta', 'Nitab4.5_0003607g0010' => 'nta', 'Nitab4.5_0004917g0020' => 'nta', 'Nitab4.5_0007059g0010' => 'nta', 'Nitab4.5_0007184g0010' => 'nta', 'Nitab4.5_0007346g0020' => 'nta', 'Nn1g00410' => 'nnu', 'Nn1g01252' => 'nnu', 'Nn2g11168' => 'nnu', 'Nn2g13403' => 'nnu', 'Nn2g13760' => 'nnu', 'Nn4g26380' => 'nnu', 'Oeu000806.2' => 'oeu', 'Oeu005788.1' => 'oeu', 'Oeu006900.3' => 'oeu', 'Oeu007797.1' => 'oeu', 'Oeu011932.1' => 'oeu', 'Oeu022739.1' => 'oeu', 'Oeu037918.1' => 'oeu', 'Oeu055490.2' => 'oeu', 'Os01g0844400' => 'osa', 'Os02g0819100' => 'osa', 'Os03g0804300' => 'osa', 'Os05g0458000' => 'osa', 'Os07g0467800' => 'osa', 'Os12g0602200' => 'osa', 'Peaxi162Scf00013g03444' => 'pax', 'Peaxi162Scf00094g01120' => 'pax', 'Peaxi162Scf00191g01211' => 'pax', 'Peaxi162Scf00238g01110' => 'pax', 'Peaxi162Scf00330g00719' => 'pax', 'Peaxi162Scf00627g00018' => 'pax', 'PGR031G2686' => 'pgr', 'PGR042G0809' => 'pgr', 'PGR142G0193' => 'pgr', 'PGSC0003DMG400011066' => 'stu', 'PGSC0003DMG400012041' => 'stu', 'PGSC0003DMG400013678' => 'stu', 'PGSC0003DMG400023477' => 'stu', 'PGSC0003DMG400025956' => 'stu', 'PGSC0003DMG401019151' => 'stu', 'Phvul.006G116400' => 'pvu', 'Phvul.007G097300' => 'pvu', 'Phvul.010G015000' => 'pvu', 'Phvul.010G083900' => 'pvu', 'Potri.001G117100' => 'ptr', 'Potri.002G147300' => 'ptr', 'Potri.003G115600' => 'ptr', 'Potri.006G087400' => 'ptr', 'Potri.010G226100' => 'ptr', 'Potri.014G069200' => 'ptr', 'Potri.014G104000' => 'ptr', 'Potri.016G100200' => 'ptr', 'Pp3c10_20450' => 'ppa', 'Pp3c1_42400' => 'ppa', 'Pp3c3_24390' => 'ppa', 'Pp3c3_2860' => 'ppa', 'PRCOL_00003193' => 'pco', 'Prupe.2G144500' => 'ppe', 'Prupe.2G195700' => 'ppe', 'Prupe.2G209800' => 'ppe', 'Prupe.5G080000' => 'ppe', 'Prupe.6G257900' => 'ppe', 'Psat3g001160' => 'psa', 'Psat6g181880' => 'psa', 'Psat7g233720' => 'psa', 'PSO063G7587' => 'pso', 'PSO339G2145' => 'pso', 'PSO339G3369' => 'pso', 'PSO478G2747' => 'pso', 'PSO513G0140' => 'pso', 'PSO782G1614' => 'pso', 'PSO782G4889' => 'pso', 'PSO782G5485' => 'pso', 'PSO801G0241' => 'pso', 'QL07p048854' => 'qlo', 'QL08p046745' => 'qlo', 'QL08p052606' => 'qlo', 'QL08p053414' => 'qlo', 'QL08p054868' => 'qlo', 'RcHm_v2.0_Chr1g0350251' => 'rch', 'RcHm_v2.0_Chr1g0360851' => 'rch', 'RcHm_v2.0_Chr1g0362791' => 'rch', 'RcHm_v2.0_Chr3g0466281' => 'rch', 'RcHm_v2.0_Chr7g0201481' => 'rch', 'Rhsim01G0148600' => 'rsi', 'Rhsim05G0194400' => 'rsi', 'Rhsim07G0000700' => 'rsi', 'Rhsim07G0000800' => 'rsi', 'Rhsim07G0027900' => 'rsi', 'Rhsim09G0149500' => 'rsi', 'RhsimUnG0186900' => 'rsi', 'Sabra01G0089900' => 'sbr', 'Sabra02G0114700' => 'sbr', 'Sabra02G0116300' => 'sbr', 'Sabra03G0080100' => 'sbr', 'Sabra08G0024300' => 'sbr', 'Sabra10G0174300' => 'sbr', 'Sabra14G0048900' => 'sbr', 'Sabra14G0076500' => 'sbr', 'SalBow5G2513' => 'sbo', 'Sc01g0002300' => 'sci', 'Sc01g0004450' => 'sci', 'Sc06g0001680' => 'sci', 'Sc23g0003580' => 'sci', 'Sed0000913' => 'sed', 'Sed0001655' => 'sed', 'Sed0007745' => 'sed', 'Sed0010951' => 'sed', 'Sed0017599' => 'sed', 'Sed0021405' => 'sed', 'Sed0022810' => 'sed', 'SEGI_07099' => 'sgi', 'SEGI_11931' => 'sgi', 'SEGI_13187' => 'sgi', 'SEGI_29958' => 'sgi', 'SEGI_36351' => 'sgi', 'SGA_v2.0_scaffold126G33770' => 'sas', 'SGA_v2.0_scaffold153G37003' => 'sas', 'SGA_v2.0_scaffold2G01359' => 'sas', 'SGA_v2.0_scaffold5G03064' => 'sas', 'SGA_v2.0_scaffold95G28903' => 'sas', 'SHI12701' => 'shi', 'SHI26410' => 'shi', 'SHI38997' => 'shi', 'SHI53759' => 'shi', 'SHI53886' => 'shi', 'SHI54714' => 'shi', 'SMO011G0041' => 'smo', 'SMO146G0251' => 'smo', 'SMO160G0004' => 'smo', 'SMO174G0057' => 'smo', 'SMO244G0089' => 'smo', 'SMO296G0011' => 'smo', 'Solyc01g091280.3' => 'sly', 'Solyc05g047610.3' => 'sly', 'Solyc05g047640.3' => 'sly', 'Solyc05g055630.3' => 'sly', 'Solyc10g018160.2' => 'sly', 'Solyc10g084820.2' => 'sly', 'Solyc10g086565.2' => 'sly', 'Sopen01g037030' => 'spe', 'Sopen05g027920' => 'spe', 'Sopen05g034070' => 'spe', 'Sopen10g007260' => 'spe', 'Sopen10g034260' => 'spe', 'Sopen10g035950' => 'spe', 'Sp3g07710' => 'spa', 'Sp4g27420' => 'spa', 'Sp5g02450' => 'spa', 'Sp6g01280' => 'spa', 'Sp6g38480' => 'spa', 'Sp7g20780' => 'spa', 'TAR374G1413' => 'tar', 'TAR623G1777' => 'tar', 'TAR629G2370' => 'tar', 'TAR633G1759' => 'tar', 'TAR636G3387' => 'tar', 'THA.LOC104802447' => 'tha', 'THA.LOC104813916' => 'tha', 'THA.LOC104816423' => 'tha', 'THA.LOC104817246' => 'tha', 'THA.LOC104825895' => 'tha', 'Thecc.01G335200' => 'tca', 'Thecc.01G377400' => 'tca', 'Thecc.03G262200' => 'tca', 'Thecc.05G036800' => 'tca', 'Thecc.10G080500' => 'tca', 'Thecc.10G080800' => 'tca', 'Thhalv10001560m.g' => 'esa', 'Thhalv10006120m.g' => 'esa', 'Thhalv10014375m.g' => 'esa', 'Thhalv10021264m.g' => 'esa', 'Thhalv10028856m.g' => 'esa', 'TPR.G1914' => 'tpr', 'TPR.G4757' => 'tpr', 'TPR.G5595' => 'tpr', 'TWI14G0952' => 'twi', 'TWI14G1307' => 'twi', 'TWI38G2143' => 'twi', 'TWI59G0826' => 'twi', 'TWI77G0527' => 'twi', 'TWI81G0150' => 'twi', 'unitig_21.g21018' => 'ugi', 'unitig_26.g9725' => 'ugi', 'unitig_744.g24653' => 'ugi', 'unitig_749.g13778' => 'ugi', 'unitig_899.g15035' => 'ugi', 'vmacro04296' => 'vma', 'vmacro04852' => 'vma', 'vmacro13404' => 'vma', 'vmacro20169' => 'vma', 'vmacro21014' => 'vma', 'VMungo0331G0237' => 'vmu', 'VMungo0331G0706' => 'vmu', 'VMungo0331G1361' => 'vmu', 'VMungo0331G1489' => 'vmu', 'VMungo0540G1037' => 'vmu', 'VMungo0720G2487' => 'vmu', 'VMungo0720G2721' => 'vmu', 'Zm00001eb086860' => 'zma', 'Zm00001eb104760' => 'zma', 'Zm00001eb148220' => 'zma', 'Zm00001eb259030' => 'zma', 'Zm00001eb289590' => 'zma', 'Zm00001eb420150' => 'zma' ) $gf_id = 'HOM05D000968' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000968' ) $data_identifier = 'HOM05D000968' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 19, 'bol' => (int) 9, 'bra' => (int) 12, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 5, 'ccan' => (int) 7, 'cde' => (int) 5, 'cfa' => (int) 8, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 4, 'dca' => (int) 5, 'din' => (int) 5, 'dzi' => (int) 12, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 25, 'fve' => (int) 5, 'gma' => (int) 9, 'ghi' => (int) 18, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 7, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 5, 'sun' => (int) 2, 'lal' => (int) 9, 'lja' => (int) 5, 'lonja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 9, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 2, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 3, 'stu' => (int) 6, 'pvu' => (int) 4, 'ptr' => (int) 8, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 3, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 1, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 5, 'sas' => (int) 5, 'shi' => (int) 6, 'smo' => (int) 6, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 3, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420150' $species_info = array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ) $local_species = 'gra' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000968', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p31690' => 'bna', 'A03p36040' => 'bna', 'A03p53730' => 'bna', 'A04p01410' => 'bna', 'A05p05420' => 'bna', 'A05p39630' => 'bna', 'A05p39640' => 'bna', 'A09p00970' => 'bna', 'A09p53060' => 'bna', 'A10p31890' => 'bna', 'Aa31LG10G15040' => 'aar', 'Aa31LG1G21090' => 'aar', 'Aa31LG1G26900' => 'aar', 'Aa31LG3G1820' => 'aar', 'Aa31LG5G1100' => 'aar', 'Aa31LG6G4740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2265' => 'aag', 'Actinidia07998' => 'ach', 'Actinidia11266' => 'ach', 'Actinidia12682' => 'ach', 'Actinidia26479' => 'ach', 'Actinidia31406' => 'ach', 'Actinidia32437' => 'ach', 'Actinidia38862' => 'ach', 'Ah.05g174230' => 'amhyb', 'Ah.05g179070' => 'amhyb', 'Ah.05g179090' => 'amhyb', 'Ah.12g059950' => 'amhyb', 'AL3G20480' => 'aly', 'AL4G44520' => 'aly', 'AL5G43110' => 'aly', 'AL6G13890' => 'aly', 'AL6G52620' => 'aly', 'AL7G30830' => 'aly', 'Aqoxy1G00899' => 'aox', 'Aqoxy5G04333' => 'aox', 'Aqoxy7G00641' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3IZ0NN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4EF6AW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W9P8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79GA3M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C43NQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFCU6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G95YVJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCHK29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LU1UG8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX91RN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGB4B1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8DA0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9H7JI' => 'arhy', 'AT3G09320' => 'ath', 'AT3G60800' => 'ath', 'AT4G00840' => 'ath', 'AT4G22750' => 'ath', 'AT5G04270' => 'ath', 'ATR0090G003' => 'atr', 'ATR0559G349' => 'atr', 'ATR0680G261' => 'atr', 'ATR0810G048' => 'atr', 'Atru.chr12.831' => 'acertr', 'Atru.chr5.303' => 'acertr', 'Atru.chr5.748' => 'acertr', 'Atru.chr8.1999' => 'acertr', 'Atru.chr9.1436' => 'acertr', 'AUR62004211' => 'cqu', 'AUR62004548' => 'cqu', 'AUR62013637' => 'cqu', 'AUR62022662' => 'cqu', 'AUR62025777' => 'cqu', 'AUR62042386' => 'cqu', 'BcaB01g02310' => 'bca', 'BcaB01g06062' => 'bca', 'BcaB02g08975' => 'bca', 'BcaB02g08980' => 'bca', 'BcaC01g04228' => 'bca', 'BcaC01g06830' => 'bca', 'BcaC02g10186' => 'bca', 'BcaC02g12214' => 'bca', 'BcaC04g24101' => 'bca', 'BcaC05g29520' => 'bca', 'BcaC05g29661' => 'bca', 'BcaC06g32130' => 'bca', 'BcaC06g32131' => 'bca', 'BcaC07g40601' => 'bca', 'BcaC07g42641' => 'bca', 'BcaNung01038' => 'bca', 'BcaNung01676' => 'bca', 'BcaNung02480' => 'bca', 'BcaNung07376' => 'bca', 'BolC3t16146H' => 'bol', 'BolC3t16637H' => 'bol', 'BolC4t22257H' => 'bol', 'BolC4t24728H' => 'bol', 'BolC5t34517H' => 'bol', 'BolC7t45703H' => 'bol', 'BolC8t51166H' => 'bol', 'BolC9t53038H' => 'bol', 'BolC9t60000H' => 'bol', 'BraA01t01345Z' => 'bra', 'BraA01t01346Z' => 'bra', 'BraA01t01348Z' => 'bra', 'BraA03t12347Z' => 'bra', 'BraA03t12775Z' => 'bra', 'BraA03t14439Z' => 'bra', 'BraA04t15860Z' => 'bra', 'BraA05t19511Z' => 'bra', 'BraA05t22746Z' => 'bra', 'BraA09t35767Z' => 'bra', 'BraA09t40732Z' => 'bra', 'BraA10t45233Z' => 'bra', 'C03p38720' => 'bna', 'C03p43680' => 'bna', 'C04p06350' => 'bna', 'C04p31800' => 'bna', 'C05p58680' => 'bna', 'C07p52110' => 'bna', 'C08p35760' => 'bna', 'C09p01050' => 'bna', 'C09p72600' => 'bna', 'CAN.G106.2' => 'can', 'CAN.G1482.1' => 'can', 'CAN.G324.12' => 'can', 'CAN.G388.20' => 'can', 'CAN.G412.7' => 'can', 'CAN.G694.32' => 'can', 'CAN.G92.12' => 'can', 'CANSAT11G2353' => 'cansat', 'CANSAT21G1398' => 'cansat', 'CANSAT56G2456' => 'cansat', 'CANSAT56G3031' => 'cansat', 'CANSAT56G4539' => 'cansat', 'CARHR083680' => 'chi', 'CARHR171190' => 'chi', 'CARHR209010' => 'chi', 'CARHR229680' => 'chi', 'CARHR249490' => 'chi', 'Carub.0003s0844' => 'cru', 'Carub.0005s2755' => 'cru', 'Carub.0006s0322' => 'cru', 'Carub.0006s3586' => 'cru', 'Carub.0007s1855' => 'cru', 'Ca_07808_v3' => 'car', 'Ca_09535_v3' => 'car', 'Ca_10548_v3' => 'car', 'Ca_19913_v3' => 'car', 'Ca_19916_v3' => 'car', 'Ca_19975_v3' => 'car', 'CBR_g22876' => 'cbr', 'CBR_g22879' => 'cbr', 'CBR_g38491' => 'cbr', 'CBR_g54185' => 'cbr', 'CBR_g54190' => 'cbr', 'Cc02_g11020' => 'ccan', 'Cc02_g23920' => 'ccan', 'Cc02_g39860' => 'ccan', 'Cc02_g39870' => 'ccan', 'Cc03_g06760' => 'ccan', 'Cc06_g02450' => 'ccan', 'Cc09_g09450' => 'ccan', 'CDE02G1959' => 'cde', 'CDE04G0600' => 'cde', 'CDE07G1996' => 'cde', 'CDE07G2078' => 'cde', 'CDE11G0611' => 'cde', 'Cfa001683' => 'cfa', 'Cfa001734' => 'cfa', 'Cfa001737' => 'cfa', 'Cfa003751' => 'cfa', 'Cfa012019' => 'cfa', 'Cfa017353' => 'cfa', 'Cfa017732' => 'cfa', 'Cfa022464' => 'cfa', 'Ciclev10012400m.g' => 'ccl', 'Ciclev10021242m.g' => 'ccl', 'Ciclev10021302m.g' => 'ccl', 'Ciclev10021463m.g' => 'ccl', 'Ciclev10032359m.g' => 'ccl', 'CiPaw.01G081000' => 'cil', 'CiPaw.01G262500' => 'cil', 'CiPaw.01G269800' => 'cil', 'CiPaw.02G168400' => 'cil', 'CiPaw.05G119500' => 'cil', 'CiPaw.11G147300' => 'cil', 'ClCG01G003630' => 'cla', 'ClCG05G000510' => 'cla', 'ClCG05G002300' => 'cla', 'ClCG08G007650' => 'cla', 'ClCG10G021250' => 'cla', 'COL.COLO4_06218' => 'col', 'COL.COLO4_12538' => 'col', 'COL.COLO4_14775' => 'col', 'COL.COLO4_23875' => 'col', 'Cpa.g.sc141.16' => 'cpa', 'Cpa.g.sc169.16' => 'cpa', 'Cpa.g.sc244.4' => 'cpa', 'Cpa.g.sc244.5' => 'cpa', 'Cpa.g.sc29.87' => 'cpa', 'Cpa.g.sc53.115' => 'cpa', 'Cre03.g207502' => 'cre', 'Cre06.g277000' => 'cre', 'Cre09.g394050' => 'cre', 'CsaV3_3G007680' => 'csa', 'CsaV3_3G009710' => 'csa', 'CsaV3_3G034790' => 'csa', 'CsaV3_5G003750' => 'csa', 'CsaV3_6G036620' => 'csa', 'CSS0002288' => 'camsi', 'CSS0011250' => 'camsi', 'CSS0021619' => 'camsi', 'CSS0046701' => 'camsi', 'DCAR_006420' => 'dca', 'DCAR_006865' => 'dca', 'DCAR_008558' => 'dca', 'DCAR_028754' => 'dca', 'DCAR_028755' => 'dca', 'Dinv31218' => 'din', 'Dinv32371' => 'din', 'Dinv34250' => 'din', 'Dinv37156' => 'din', 'Dinv43704' => 'din', 'Duzib093G1811' => 'dzi', 'Duzib106G1622' => 'dzi', 'Duzib114G0504' => 'dzi', 'Duzib128G0338' => 'dzi', 'Duzib128G1577' => 'dzi', 'Duzib133G0104' => 'dzi', 'Duzib133G1080' => 'dzi', 'Duzib138G0324' => 'dzi', 'Duzib138G0394' => 'dzi', 'Duzib205G0122' => 'dzi', 'Duzib268G1020' => 'dzi', 'Duzib268G1359' => 'dzi', 'ECA232G3929' => 'eca', 'ECA236G2210' => 'eca', 'ECA236G2287' => 'eca', 'ECA240G4568' => 'eca', 'ECA247G0894' => 'eca', 'EL10Ac1g00200' => 'bvu', 'EL10Ac1g00886' => 'bvu', 'EL10As1g23091' => 'bvu', 'EL10As1g23092' => 'bvu', 'Eucgr.A01284' => 'egr', 'Eucgr.A01285' => 'egr', 'Eucgr.D02456' => 'egr', 'Eucgr.E00018' => 'egr', 'Eucgr.E01439' => 'egr', 'Eucgr.G02859' => 'egr', 'FAN01G0168' => 'fan', 'FAN01G0453' => 'fan', 'FAN01G2761' => 'fan', 'FAN02G1239' => 'fan', 'FAN03G0645' => 'fan', 'FAN03G2707' => 'fan', 'FAN03G2978' => 'fan', 'FAN04G0227' => 'fan', 'FAN06G0091' => 'fan', 'FAN06G1418' => 'fan', 'FAN06G1512' => 'fan', 'FAN06G1986' => 'fan', 'FAN06G2905' => 'fan', 'FAN06G4325' => 'fan', 'FAN08G0033' => 'fan', 'FAN09G0642' => 'fan', 'FAN10G1763' => 'fan', 'FAN10G2026' => 'fan', 'FAN10G2513' => 'fan', 'FAN10G3402' => 'fan', 'FAN10G3564' => 'fan', 'FAN10G3987' => 'fan', 'FAN13G1490' => 'fan', 'FAN14G5857' => 'fan', 'FAN18G1188' => 'fan', 'FvH4_5g00750' => 'fve', 'FvH4_6g13410' => 'fve', 'FvH4_7g11740' => 'fve', 'FvH4_7g17410' => 'fve', 'FvH4_7g18860' => 'fve', 'Glyma.01G099100' => 'gma', 'Glyma.01G142300' => 'gma', 'Glyma.03G025500' => 'gma', 'Glyma.03G069700' => 'gma', 'Glyma.03G260000' => 'gma', 'Glyma.09G269800' => 'gma', 'Glyma.10G208700' => 'gma', 'Glyma.18G220400' => 'gma', 'Glyma.20G182000' => 'gma', 'Gohir.A01G221726' => 'ghi', 'Gohir.A07G134600' => 'ghi', 'Gohir.A07G146000' => 'ghi', 'Gohir.A08G173900' => 'ghi', 'Gohir.A09G194900' => 'ghi', 'Gohir.A10G204100' => 'ghi', 'Gohir.A11G080600' => 'ghi', 'Gohir.A11G327500' => 'ghi', 'Gohir.A12G101800' => 'ghi', 'Gohir.D01G211200' => 'ghi', 'Gohir.D07G139200' => 'ghi', 'Gohir.D07G152100' => 'ghi', 'Gohir.D08G192600' => 'ghi', 'Gohir.D09G189200' => 'ghi', 'Gohir.D10G212000' => 'ghi', 'Gohir.D11G085200' => 'ghi', 'Gohir.D11G346400' => 'ghi', 'Gohir.D12G104800' => 'ghi', 'Gorai.001G151300' => 'gra', 'Gorai.001G174100' => 'gra', 'Gorai.002G257000' => 'gra', 'Gorai.004G202600' => 'gra', 'Gorai.007G090900' => 'gra', 'Gorai.007G376700' => 'gra', 'Gorai.008G114100' => 'gra', 'Gorai.011G237900' => 'gra', 'GSVIVG01005450001' => 'vvi', 'GSVIVG01016232001' => 'vvi', 'GSVIVG01026157001' => 'vvi', 'GSVIVG01027419001' => 'vvi', 'GSVIVG01027631001' => 'vvi', 'GSVIVG01034143001' => 'vvi', 'HanXRQChr03g0093921' => 'han', 'HanXRQChr04g0120001' => 'han', 'HanXRQChr04g0122561' => 'han', 'HanXRQChr09g0246851' => 'han', 'HanXRQChr10g0293311' => 'han', 'HanXRQChr13g0425231' => 'han', 'HanXRQChr16g0532571' => 'han', 'Haze_09050' => 'cav', 'Haze_15715' => 'cav', 'Haze_15716' => 'cav', 'Haze_16803' => 'cav', 'Haze_16850' => 'cav', 'Hma1.2p1_0301F.1_g118655' => 'hma', 'Hma1.2p1_0309F.1_g120590' => 'hma', 'Hma1.2p1_0936F.1_g238900' => 'hma', 'Hma1.2p1_3552F.1_g336740' => 'hma', 'HPP92_003520' => 'vpl', 'HPP92_006628' => 'vpl', 'HPP92_006645' => 'vpl', 'HPP92_014669' => 'vpl', 'HPP92_015077' => 'vpl', 'Hund16742' => 'sun', 'Hund17022' => 'sun', 'Lalb_Chr02g0152131' => 'lal', 'Lalb_Chr05g0225371' => 'lal', 'Lalb_Chr07g0189841' => 'lal', 'Lalb_Chr07g0192961' => 'lal', 'Lalb_Chr12g0208221' => 'lal', 'Lalb_Chr13g0291211' => 'lal', 'Lalb_Chr13g0291781' => 'lal', 'Lalb_Chr18g0044651' => 'lal', 'Lalb_Chr21g0313731' => 'lal', 'Lj1g0022533' => 'lja', 'Lj2A18T50' => 'lonja', 'Lj2A92G93' => 'lonja', 'Lj3A965T73' => 'lonja', 'Lj3g0000673' => 'lja', 'Lj3g0002666' => 'lja', 'Lj4g0016985' => 'lja', 'Lj5g0003625' => 'lja', 'Lj7A529G36' => 'lonja', 'Lj9A569T49' => 'lonja', 'Lj9A604T63' => 'lonja', 'Lsat_1_v5_gn_3_132060' => 'lsa', 'Lsat_1_v5_gn_4_68941' => 'lsa', 'Lsat_1_v5_gn_5_95580' => 'lsa', 'Lsat_1_v5_gn_7_161' => 'lsa', 'Lsat_1_v5_gn_7_7041' => 'lsa', 'Lsat_1_v5_gn_9_33481' => 'lsa', 'Lsat_1_v5_gn_9_68260' => 'lsa', 'Manes.01G073100' => 'mes', 'Manes.01G266300' => 'mes', 'Manes.02G033300' => 'mes', 'Manes.05G017900' => 'mes', 'Manes.05G046100' => 'mes', 'Manes.08G080900' => 'mes', 'Manes.10G049400' => 'mes', 'Mapoly0009s0186' => 'mpo', 'Mapoly0036s0118' => 'mpo', 'Mapoly0101s0046' => 'mpo', 'MBI04_g30218_MAGBIO' => 'mbi', 'MBI04_g35564_MAGBIO' => 'mbi', 'MBI12_g34011_MAGBIO' => 'mbi', 'MBI14_g04655_MAGBIO' => 'mbi', 'MCO07G653' => 'mco', 'MCO10G173' => 'mco', 'MD01G1087100' => 'mdo', 'MD01G1104200' => 'mdo', 'MD02G1205100' => 'mdo', 'MD04G1079200' => 'mdo', 'MD04G1131400' => 'mdo', 'MD07G1121600' => 'mdo', 'MD07G1157300' => 'mdo', 'MD07G1171000' => 'mdo', 'MD12G1144500' => 'mdo', 'Medtr1g094610' => 'mtr', 'Medtr4g021795' => 'mtr', 'Medtr4g023760' => 'mtr', 'Medtr7g118050' => 'mtr', 'MELO3C005582.2' => 'cme', 'MELO3C005989.2' => 'cme', 'MELO3C006192.2' => 'cme', 'MELO3C009248.2' => 'cme', 'MELO3C019817.2' => 'cme', 'Migut.B01625' => 'egut', 'Migut.B01915' => 'egut', 'Migut.F01721' => 'egut', 'Migut.J00314' => 'egut', 'MSTRG.20742' => 'ama', 'MSTRG.8134' => 'ama', 'Nitab4.5_0000096g0010' => 'nta', 'Nitab4.5_0000202g0030' => 'nta', 'Nitab4.5_0000216g0370' => 'nta', 'Nitab4.5_0000457g0230' => 'nta', 'Nitab4.5_0001702g0170' => 'nta', 'Nitab4.5_0003607g0010' => 'nta', 'Nitab4.5_0004917g0020' => 'nta', 'Nitab4.5_0007059g0010' => 'nta', 'Nitab4.5_0007184g0010' => 'nta', 'Nitab4.5_0007346g0020' => 'nta', 'Nn1g00410' => 'nnu', 'Nn1g01252' => 'nnu', 'Nn2g11168' => 'nnu', 'Nn2g13403' => 'nnu', 'Nn2g13760' => 'nnu', 'Nn4g26380' => 'nnu', 'Oeu000806.2' => 'oeu', 'Oeu005788.1' => 'oeu', 'Oeu006900.3' => 'oeu', 'Oeu007797.1' => 'oeu', 'Oeu011932.1' => 'oeu', 'Oeu022739.1' => 'oeu', 'Oeu037918.1' => 'oeu', 'Oeu055490.2' => 'oeu', 'Os01g0844400' => 'osa', 'Os02g0819100' => 'osa', 'Os03g0804300' => 'osa', 'Os05g0458000' => 'osa', 'Os07g0467800' => 'osa', 'Os12g0602200' => 'osa', 'Peaxi162Scf00013g03444' => 'pax', 'Peaxi162Scf00094g01120' => 'pax', 'Peaxi162Scf00191g01211' => 'pax', 'Peaxi162Scf00238g01110' => 'pax', 'Peaxi162Scf00330g00719' => 'pax', 'Peaxi162Scf00627g00018' => 'pax', 'PGR031G2686' => 'pgr', 'PGR042G0809' => 'pgr', 'PGR142G0193' => 'pgr', 'PGSC0003DMG400011066' => 'stu', 'PGSC0003DMG400012041' => 'stu', 'PGSC0003DMG400013678' => 'stu', 'PGSC0003DMG400023477' => 'stu', 'PGSC0003DMG400025956' => 'stu', 'PGSC0003DMG401019151' => 'stu', 'Phvul.006G116400' => 'pvu', 'Phvul.007G097300' => 'pvu', 'Phvul.010G015000' => 'pvu', 'Phvul.010G083900' => 'pvu', 'Potri.001G117100' => 'ptr', 'Potri.002G147300' => 'ptr', 'Potri.003G115600' => 'ptr', 'Potri.006G087400' => 'ptr', 'Potri.010G226100' => 'ptr', 'Potri.014G069200' => 'ptr', 'Potri.014G104000' => 'ptr', 'Potri.016G100200' => 'ptr', 'Pp3c10_20450' => 'ppa', 'Pp3c1_42400' => 'ppa', 'Pp3c3_24390' => 'ppa', 'Pp3c3_2860' => 'ppa', 'PRCOL_00003193' => 'pco', 'Prupe.2G144500' => 'ppe', 'Prupe.2G195700' => 'ppe', 'Prupe.2G209800' => 'ppe', 'Prupe.5G080000' => 'ppe', 'Prupe.6G257900' => 'ppe', 'Psat3g001160' => 'psa', 'Psat6g181880' => 'psa', 'Psat7g233720' => 'psa', 'PSO063G7587' => 'pso', 'PSO339G2145' => 'pso', 'PSO339G3369' => 'pso', 'PSO478G2747' => 'pso', 'PSO513G0140' => 'pso', 'PSO782G1614' => 'pso', 'PSO782G4889' => 'pso', 'PSO782G5485' => 'pso', 'PSO801G0241' => 'pso', 'QL07p048854' => 'qlo', 'QL08p046745' => 'qlo', 'QL08p052606' => 'qlo', 'QL08p053414' => 'qlo', 'QL08p054868' => 'qlo', 'RcHm_v2.0_Chr1g0350251' => 'rch', 'RcHm_v2.0_Chr1g0360851' => 'rch', 'RcHm_v2.0_Chr1g0362791' => 'rch', 'RcHm_v2.0_Chr3g0466281' => 'rch', 'RcHm_v2.0_Chr7g0201481' => 'rch', 'Rhsim01G0148600' => 'rsi', 'Rhsim05G0194400' => 'rsi', 'Rhsim07G0000700' => 'rsi', 'Rhsim07G0000800' => 'rsi', 'Rhsim07G0027900' => 'rsi', 'Rhsim09G0149500' => 'rsi', 'RhsimUnG0186900' => 'rsi', 'Sabra01G0089900' => 'sbr', 'Sabra02G0114700' => 'sbr', 'Sabra02G0116300' => 'sbr', 'Sabra03G0080100' => 'sbr', 'Sabra08G0024300' => 'sbr', 'Sabra10G0174300' => 'sbr', 'Sabra14G0048900' => 'sbr', 'Sabra14G0076500' => 'sbr', 'SalBow5G2513' => 'sbo', 'Sc01g0002300' => 'sci', 'Sc01g0004450' => 'sci', 'Sc06g0001680' => 'sci', 'Sc23g0003580' => 'sci', 'Sed0000913' => 'sed', 'Sed0001655' => 'sed', 'Sed0007745' => 'sed', 'Sed0010951' => 'sed', 'Sed0017599' => 'sed', 'Sed0021405' => 'sed', 'Sed0022810' => 'sed', 'SEGI_07099' => 'sgi', 'SEGI_11931' => 'sgi', 'SEGI_13187' => 'sgi', 'SEGI_29958' => 'sgi', 'SEGI_36351' => 'sgi', 'SGA_v2.0_scaffold126G33770' => 'sas', 'SGA_v2.0_scaffold153G37003' => 'sas', 'SGA_v2.0_scaffold2G01359' => 'sas', 'SGA_v2.0_scaffold5G03064' => 'sas', 'SGA_v2.0_scaffold95G28903' => 'sas', 'SHI12701' => 'shi', 'SHI26410' => 'shi', 'SHI38997' => 'shi', 'SHI53759' => 'shi', 'SHI53886' => 'shi', 'SHI54714' => 'shi', 'SMO011G0041' => 'smo', 'SMO146G0251' => 'smo', 'SMO160G0004' => 'smo', 'SMO174G0057' => 'smo', 'SMO244G0089' => 'smo', 'SMO296G0011' => 'smo', 'Solyc01g091280.3' => 'sly', 'Solyc05g047610.3' => 'sly', 'Solyc05g047640.3' => 'sly', 'Solyc05g055630.3' => 'sly', 'Solyc10g018160.2' => 'sly', 'Solyc10g084820.2' => 'sly', 'Solyc10g086565.2' => 'sly', 'Sopen01g037030' => 'spe', 'Sopen05g027920' => 'spe', 'Sopen05g034070' => 'spe', 'Sopen10g007260' => 'spe', 'Sopen10g034260' => 'spe', 'Sopen10g035950' => 'spe', 'Sp3g07710' => 'spa', 'Sp4g27420' => 'spa', 'Sp5g02450' => 'spa', 'Sp6g01280' => 'spa', 'Sp6g38480' => 'spa', 'Sp7g20780' => 'spa', 'TAR374G1413' => 'tar', 'TAR623G1777' => 'tar', 'TAR629G2370' => 'tar', 'TAR633G1759' => 'tar', 'TAR636G3387' => 'tar', 'THA.LOC104802447' => 'tha', 'THA.LOC104813916' => 'tha', 'THA.LOC104816423' => 'tha', 'THA.LOC104817246' => 'tha', 'THA.LOC104825895' => 'tha', 'Thecc.01G335200' => 'tca', 'Thecc.01G377400' => 'tca', 'Thecc.03G262200' => 'tca', 'Thecc.05G036800' => 'tca', 'Thecc.10G080500' => 'tca', 'Thecc.10G080800' => 'tca', 'Thhalv10001560m.g' => 'esa', 'Thhalv10006120m.g' => 'esa', 'Thhalv10014375m.g' => 'esa', 'Thhalv10021264m.g' => 'esa', 'Thhalv10028856m.g' => 'esa', 'TPR.G1914' => 'tpr', 'TPR.G4757' => 'tpr', 'TPR.G5595' => 'tpr', 'TWI14G0952' => 'twi', 'TWI14G1307' => 'twi', 'TWI38G2143' => 'twi', 'TWI59G0826' => 'twi', 'TWI77G0527' => 'twi', 'TWI81G0150' => 'twi', 'unitig_21.g21018' => 'ugi', 'unitig_26.g9725' => 'ugi', 'unitig_744.g24653' => 'ugi', 'unitig_749.g13778' => 'ugi', 'unitig_899.g15035' => 'ugi', 'vmacro04296' => 'vma', 'vmacro04852' => 'vma', 'vmacro13404' => 'vma', 'vmacro20169' => 'vma', 'vmacro21014' => 'vma', 'VMungo0331G0237' => 'vmu', 'VMungo0331G0706' => 'vmu', 'VMungo0331G1361' => 'vmu', 'VMungo0331G1489' => 'vmu', 'VMungo0540G1037' => 'vmu', 'VMungo0720G2487' => 'vmu', 'VMungo0720G2721' => 'vmu', 'Zm00001eb086860' => 'zma', 'Zm00001eb104760' => 'zma', 'Zm00001eb148220' => 'zma', 'Zm00001eb259030' => 'zma', 'Zm00001eb289590' => 'zma', 'Zm00001eb420150' => 'zma' ), 'gf_id' => 'HOM05D000968', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000968' ), 'data_identifier' => 'HOM05D000968', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000968', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p31690' => 'bna', 'A03p36040' => 'bna', 'A03p53730' => 'bna', 'A04p01410' => 'bna', 'A05p05420' => 'bna', 'A05p39630' => 'bna', 'A05p39640' => 'bna', 'A09p00970' => 'bna', 'A09p53060' => 'bna', 'A10p31890' => 'bna', 'Aa31LG10G15040' => 'aar', 'Aa31LG1G21090' => 'aar', 'Aa31LG1G26900' => 'aar', 'Aa31LG3G1820' => 'aar', 'Aa31LG5G1100' => 'aar', 'Aa31LG6G4740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2265' => 'aag', 'Actinidia07998' => 'ach', 'Actinidia11266' => 'ach', 'Actinidia12682' => 'ach', 'Actinidia26479' => 'ach', 'Actinidia31406' => 'ach', 'Actinidia32437' => 'ach', 'Actinidia38862' => 'ach', 'Ah.05g174230' => 'amhyb', 'Ah.05g179070' => 'amhyb', 'Ah.05g179090' => 'amhyb', 'Ah.12g059950' => 'amhyb', 'AL3G20480' => 'aly', 'AL4G44520' => 'aly', 'AL5G43110' => 'aly', 'AL6G13890' => 'aly', 'AL6G52620' => 'aly', 'AL7G30830' => 'aly', 'Aqoxy1G00899' => 'aox', 'Aqoxy5G04333' => 'aox', 'Aqoxy7G00641' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3IZ0NN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4EF6AW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W9P8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79GA3M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C43NQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFCU6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G95YVJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCHK29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LU1UG8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX91RN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGB4B1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8DA0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9H7JI' => 'arhy', 'AT3G09320' => 'ath', 'AT3G60800' => 'ath', 'AT4G00840' => 'ath', 'AT4G22750' => 'ath', 'AT5G04270' => 'ath', 'ATR0090G003' => 'atr', 'ATR0559G349' => 'atr', 'ATR0680G261' => 'atr', 'ATR0810G048' => 'atr', 'Atru.chr12.831' => 'acertr', 'Atru.chr5.303' => 'acertr', 'Atru.chr5.748' => 'acertr', 'Atru.chr8.1999' => 'acertr', 'Atru.chr9.1436' => 'acertr', 'AUR62004211' => 'cqu', 'AUR62004548' => 'cqu', 'AUR62013637' => 'cqu', 'AUR62022662' => 'cqu', 'AUR62025777' => 'cqu', 'AUR62042386' => 'cqu', 'BcaB01g02310' => 'bca', 'BcaB01g06062' => 'bca', 'BcaB02g08975' => 'bca', 'BcaB02g08980' => 'bca', 'BcaC01g04228' => 'bca', 'BcaC01g06830' => 'bca', 'BcaC02g10186' => 'bca', 'BcaC02g12214' => 'bca', 'BcaC04g24101' => 'bca', 'BcaC05g29520' => 'bca', 'BcaC05g29661' => 'bca', 'BcaC06g32130' => 'bca', 'BcaC06g32131' => 'bca', 'BcaC07g40601' => 'bca', 'BcaC07g42641' => 'bca', 'BcaNung01038' => 'bca', 'BcaNung01676' => 'bca', 'BcaNung02480' => 'bca', 'BcaNung07376' => 'bca', 'BolC3t16146H' => 'bol', 'BolC3t16637H' => 'bol', 'BolC4t22257H' => 'bol', 'BolC4t24728H' => 'bol', 'BolC5t34517H' => 'bol', 'BolC7t45703H' => 'bol', 'BolC8t51166H' => 'bol', 'BolC9t53038H' => 'bol', 'BolC9t60000H' => 'bol', 'BraA01t01345Z' => 'bra', 'BraA01t01346Z' => 'bra', 'BraA01t01348Z' => 'bra', 'BraA03t12347Z' => 'bra', 'BraA03t12775Z' => 'bra', 'BraA03t14439Z' => 'bra', 'BraA04t15860Z' => 'bra', 'BraA05t19511Z' => 'bra', 'BraA05t22746Z' => 'bra', 'BraA09t35767Z' => 'bra', 'BraA09t40732Z' => 'bra', 'BraA10t45233Z' => 'bra', 'C03p38720' => 'bna', 'C03p43680' => 'bna', 'C04p06350' => 'bna', 'C04p31800' => 'bna', 'C05p58680' => 'bna', 'C07p52110' => 'bna', 'C08p35760' => 'bna', 'C09p01050' => 'bna', 'C09p72600' => 'bna', 'CAN.G106.2' => 'can', 'CAN.G1482.1' => 'can', 'CAN.G324.12' => 'can', 'CAN.G388.20' => 'can', 'CAN.G412.7' => 'can', 'CAN.G694.32' => 'can', 'CAN.G92.12' => 'can', 'CANSAT11G2353' => 'cansat', 'CANSAT21G1398' => 'cansat', 'CANSAT56G2456' => 'cansat', 'CANSAT56G3031' => 'cansat', 'CANSAT56G4539' => 'cansat', 'CARHR083680' => 'chi', 'CARHR171190' => 'chi', 'CARHR209010' => 'chi', 'CARHR229680' => 'chi', 'CARHR249490' => 'chi', 'Carub.0003s0844' => 'cru', 'Carub.0005s2755' => 'cru', 'Carub.0006s0322' => 'cru', 'Carub.0006s3586' => 'cru', 'Carub.0007s1855' => 'cru', 'Ca_07808_v3' => 'car', 'Ca_09535_v3' => 'car', 'Ca_10548_v3' => 'car', 'Ca_19913_v3' => 'car', 'Ca_19916_v3' => 'car', 'Ca_19975_v3' => 'car', 'CBR_g22876' => 'cbr', 'CBR_g22879' => 'cbr', 'CBR_g38491' => 'cbr', 'CBR_g54185' => 'cbr', 'CBR_g54190' => 'cbr', 'Cc02_g11020' => 'ccan', 'Cc02_g23920' => 'ccan', 'Cc02_g39860' => 'ccan', 'Cc02_g39870' => 'ccan', 'Cc03_g06760' => 'ccan', 'Cc06_g02450' => 'ccan', 'Cc09_g09450' => 'ccan', 'CDE02G1959' => 'cde', 'CDE04G0600' => 'cde', 'CDE07G1996' => 'cde', 'CDE07G2078' => 'cde', 'CDE11G0611' => 'cde', 'Cfa001683' => 'cfa', 'Cfa001734' => 'cfa', 'Cfa001737' => 'cfa', 'Cfa003751' => 'cfa', 'Cfa012019' => 'cfa', 'Cfa017353' => 'cfa', 'Cfa017732' => 'cfa', 'Cfa022464' => 'cfa', 'Ciclev10012400m.g' => 'ccl', 'Ciclev10021242m.g' => 'ccl', 'Ciclev10021302m.g' => 'ccl', 'Ciclev10021463m.g' => 'ccl', 'Ciclev10032359m.g' => 'ccl', 'CiPaw.01G081000' => 'cil', 'CiPaw.01G262500' => 'cil', 'CiPaw.01G269800' => 'cil', 'CiPaw.02G168400' => 'cil', 'CiPaw.05G119500' => 'cil', 'CiPaw.11G147300' => 'cil', 'ClCG01G003630' => 'cla', 'ClCG05G000510' => 'cla', 'ClCG05G002300' => 'cla', 'ClCG08G007650' => 'cla', 'ClCG10G021250' => 'cla', 'COL.COLO4_06218' => 'col', 'COL.COLO4_12538' => 'col', 'COL.COLO4_14775' => 'col', 'COL.COLO4_23875' => 'col', 'Cpa.g.sc141.16' => 'cpa', 'Cpa.g.sc169.16' => 'cpa', 'Cpa.g.sc244.4' => 'cpa', 'Cpa.g.sc244.5' => 'cpa', 'Cpa.g.sc29.87' => 'cpa', 'Cpa.g.sc53.115' => 'cpa', 'Cre03.g207502' => 'cre', 'Cre06.g277000' => 'cre', 'Cre09.g394050' => 'cre', 'CsaV3_3G007680' => 'csa', 'CsaV3_3G009710' => 'csa', 'CsaV3_3G034790' => 'csa', 'CsaV3_5G003750' => 'csa', 'CsaV3_6G036620' => 'csa', 'CSS0002288' => 'camsi', 'CSS0011250' => 'camsi', 'CSS0021619' => 'camsi', 'CSS0046701' => 'camsi', 'DCAR_006420' => 'dca', 'DCAR_006865' => 'dca', 'DCAR_008558' => 'dca', 'DCAR_028754' => 'dca', 'DCAR_028755' => 'dca', 'Dinv31218' => 'din', 'Dinv32371' => 'din', 'Dinv34250' => 'din', 'Dinv37156' => 'din', 'Dinv43704' => 'din', 'Duzib093G1811' => 'dzi', 'Duzib106G1622' => 'dzi', 'Duzib114G0504' => 'dzi', 'Duzib128G0338' => 'dzi', 'Duzib128G1577' => 'dzi', 'Duzib133G0104' => 'dzi', 'Duzib133G1080' => 'dzi', 'Duzib138G0324' => 'dzi', 'Duzib138G0394' => 'dzi', 'Duzib205G0122' => 'dzi', 'Duzib268G1020' => 'dzi', 'Duzib268G1359' => 'dzi', 'ECA232G3929' => 'eca', 'ECA236G2210' => 'eca', 'ECA236G2287' => 'eca', 'ECA240G4568' => 'eca', 'ECA247G0894' => 'eca', 'EL10Ac1g00200' => 'bvu', 'EL10Ac1g00886' => 'bvu', 'EL10As1g23091' => 'bvu', 'EL10As1g23092' => 'bvu', 'Eucgr.A01284' => 'egr', 'Eucgr.A01285' => 'egr', 'Eucgr.D02456' => 'egr', 'Eucgr.E00018' => 'egr', 'Eucgr.E01439' => 'egr', 'Eucgr.G02859' => 'egr', 'FAN01G0168' => 'fan', 'FAN01G0453' => 'fan', 'FAN01G2761' => 'fan', 'FAN02G1239' => 'fan', 'FAN03G0645' => 'fan', 'FAN03G2707' => 'fan', 'FAN03G2978' => 'fan', 'FAN04G0227' => 'fan', 'FAN06G0091' => 'fan', 'FAN06G1418' => 'fan', 'FAN06G1512' => 'fan', 'FAN06G1986' => 'fan', 'FAN06G2905' => 'fan', 'FAN06G4325' => 'fan', 'FAN08G0033' => 'fan', 'FAN09G0642' => 'fan', 'FAN10G1763' => 'fan', 'FAN10G2026' => 'fan', 'FAN10G2513' => 'fan', 'FAN10G3402' => 'fan', 'FAN10G3564' => 'fan', 'FAN10G3987' => 'fan', 'FAN13G1490' => 'fan', 'FAN14G5857' => 'fan', 'FAN18G1188' => 'fan', 'FvH4_5g00750' => 'fve', 'FvH4_6g13410' => 'fve', 'FvH4_7g11740' => 'fve', 'FvH4_7g17410' => 'fve', 'FvH4_7g18860' => 'fve', 'Glyma.01G099100' => 'gma', 'Glyma.01G142300' => 'gma', 'Glyma.03G025500' => 'gma', 'Glyma.03G069700' => 'gma', 'Glyma.03G260000' => 'gma', 'Glyma.09G269800' => 'gma', 'Glyma.10G208700' => 'gma', 'Glyma.18G220400' => 'gma', 'Glyma.20G182000' => 'gma', 'Gohir.A01G221726' => 'ghi', 'Gohir.A07G134600' => 'ghi', 'Gohir.A07G146000' => 'ghi', 'Gohir.A08G173900' => 'ghi', 'Gohir.A09G194900' => 'ghi', 'Gohir.A10G204100' => 'ghi', 'Gohir.A11G080600' => 'ghi', 'Gohir.A11G327500' => 'ghi', 'Gohir.A12G101800' => 'ghi', 'Gohir.D01G211200' => 'ghi', 'Gohir.D07G139200' => 'ghi', 'Gohir.D07G152100' => 'ghi', 'Gohir.D08G192600' => 'ghi', 'Gohir.D09G189200' => 'ghi', 'Gohir.D10G212000' => 'ghi', 'Gohir.D11G085200' => 'ghi', 'Gohir.D11G346400' => 'ghi', 'Gohir.D12G104800' => 'ghi', 'Gorai.001G151300' => 'gra', 'Gorai.001G174100' => 'gra', 'Gorai.002G257000' => 'gra', 'Gorai.004G202600' => 'gra', 'Gorai.007G090900' => 'gra', 'Gorai.007G376700' => 'gra', 'Gorai.008G114100' => 'gra', 'Gorai.011G237900' => 'gra', 'GSVIVG01005450001' => 'vvi', 'GSVIVG01016232001' => 'vvi', 'GSVIVG01026157001' => 'vvi', 'GSVIVG01027419001' => 'vvi', 'GSVIVG01027631001' => 'vvi', 'GSVIVG01034143001' => 'vvi', 'HanXRQChr03g0093921' => 'han', 'HanXRQChr04g0120001' => 'han', 'HanXRQChr04g0122561' => 'han', 'HanXRQChr09g0246851' => 'han', 'HanXRQChr10g0293311' => 'han', 'HanXRQChr13g0425231' => 'han', 'HanXRQChr16g0532571' => 'han', 'Haze_09050' => 'cav', 'Haze_15715' => 'cav', 'Haze_15716' => 'cav', 'Haze_16803' => 'cav', 'Haze_16850' => 'cav', 'Hma1.2p1_0301F.1_g118655' => 'hma', 'Hma1.2p1_0309F.1_g120590' => 'hma', 'Hma1.2p1_0936F.1_g238900' => 'hma', 'Hma1.2p1_3552F.1_g336740' => 'hma', 'HPP92_003520' => 'vpl', 'HPP92_006628' => 'vpl', 'HPP92_006645' => 'vpl', 'HPP92_014669' => 'vpl', 'HPP92_015077' => 'vpl', 'Hund16742' => 'sun', 'Hund17022' => 'sun', 'Lalb_Chr02g0152131' => 'lal', 'Lalb_Chr05g0225371' => 'lal', 'Lalb_Chr07g0189841' => 'lal', 'Lalb_Chr07g0192961' => 'lal', 'Lalb_Chr12g0208221' => 'lal', 'Lalb_Chr13g0291211' => 'lal', 'Lalb_Chr13g0291781' => 'lal', 'Lalb_Chr18g0044651' => 'lal', 'Lalb_Chr21g0313731' => 'lal', 'Lj1g0022533' => 'lja', 'Lj2A18T50' => 'lonja', 'Lj2A92G93' => 'lonja', 'Lj3A965T73' => 'lonja', 'Lj3g0000673' => 'lja', 'Lj3g0002666' => 'lja', 'Lj4g0016985' => 'lja', 'Lj5g0003625' => 'lja', 'Lj7A529G36' => 'lonja', 'Lj9A569T49' => 'lonja', 'Lj9A604T63' => 'lonja', 'Lsat_1_v5_gn_3_132060' => 'lsa', 'Lsat_1_v5_gn_4_68941' => 'lsa', 'Lsat_1_v5_gn_5_95580' => 'lsa', 'Lsat_1_v5_gn_7_161' => 'lsa', 'Lsat_1_v5_gn_7_7041' => 'lsa', 'Lsat_1_v5_gn_9_33481' => 'lsa', 'Lsat_1_v5_gn_9_68260' => 'lsa', 'Manes.01G073100' => 'mes', 'Manes.01G266300' => 'mes', 'Manes.02G033300' => 'mes', 'Manes.05G017900' => 'mes', 'Manes.05G046100' => 'mes', 'Manes.08G080900' => 'mes', 'Manes.10G049400' => 'mes', 'Mapoly0009s0186' => 'mpo', 'Mapoly0036s0118' => 'mpo', 'Mapoly0101s0046' => 'mpo', 'MBI04_g30218_MAGBIO' => 'mbi', 'MBI04_g35564_MAGBIO' => 'mbi', 'MBI12_g34011_MAGBIO' => 'mbi', 'MBI14_g04655_MAGBIO' => 'mbi', 'MCO07G653' => 'mco', 'MCO10G173' => 'mco', 'MD01G1087100' => 'mdo', 'MD01G1104200' => 'mdo', 'MD02G1205100' => 'mdo', 'MD04G1079200' => 'mdo', 'MD04G1131400' => 'mdo', 'MD07G1121600' => 'mdo', 'MD07G1157300' => 'mdo', 'MD07G1171000' => 'mdo', 'MD12G1144500' => 'mdo', 'Medtr1g094610' => 'mtr', 'Medtr4g021795' => 'mtr', 'Medtr4g023760' => 'mtr', 'Medtr7g118050' => 'mtr', 'MELO3C005582.2' => 'cme', 'MELO3C005989.2' => 'cme', 'MELO3C006192.2' => 'cme', 'MELO3C009248.2' => 'cme', 'MELO3C019817.2' => 'cme', 'Migut.B01625' => 'egut', 'Migut.B01915' => 'egut', 'Migut.F01721' => 'egut', 'Migut.J00314' => 'egut', 'MSTRG.20742' => 'ama', 'MSTRG.8134' => 'ama', 'Nitab4.5_0000096g0010' => 'nta', 'Nitab4.5_0000202g0030' => 'nta', 'Nitab4.5_0000216g0370' => 'nta', 'Nitab4.5_0000457g0230' => 'nta', 'Nitab4.5_0001702g0170' => 'nta', 'Nitab4.5_0003607g0010' => 'nta', 'Nitab4.5_0004917g0020' => 'nta', 'Nitab4.5_0007059g0010' => 'nta', 'Nitab4.5_0007184g0010' => 'nta', 'Nitab4.5_0007346g0020' => 'nta', 'Nn1g00410' => 'nnu', 'Nn1g01252' => 'nnu', 'Nn2g11168' => 'nnu', 'Nn2g13403' => 'nnu', 'Nn2g13760' => 'nnu', 'Nn4g26380' => 'nnu', 'Oeu000806.2' => 'oeu', 'Oeu005788.1' => 'oeu', 'Oeu006900.3' => 'oeu', 'Oeu007797.1' => 'oeu', 'Oeu011932.1' => 'oeu', 'Oeu022739.1' => 'oeu', 'Oeu037918.1' => 'oeu', 'Oeu055490.2' => 'oeu', 'Os01g0844400' => 'osa', 'Os02g0819100' => 'osa', 'Os03g0804300' => 'osa', 'Os05g0458000' => 'osa', 'Os07g0467800' => 'osa', 'Os12g0602200' => 'osa', 'Peaxi162Scf00013g03444' => 'pax', 'Peaxi162Scf00094g01120' => 'pax', 'Peaxi162Scf00191g01211' => 'pax', 'Peaxi162Scf00238g01110' => 'pax', 'Peaxi162Scf00330g00719' => 'pax', 'Peaxi162Scf00627g00018' => 'pax', 'PGR031G2686' => 'pgr', 'PGR042G0809' => 'pgr', 'PGR142G0193' => 'pgr', 'PGSC0003DMG400011066' => 'stu', 'PGSC0003DMG400012041' => 'stu', 'PGSC0003DMG400013678' => 'stu', 'PGSC0003DMG400023477' => 'stu', 'PGSC0003DMG400025956' => 'stu', 'PGSC0003DMG401019151' => 'stu', 'Phvul.006G116400' => 'pvu', 'Phvul.007G097300' => 'pvu', 'Phvul.010G015000' => 'pvu', 'Phvul.010G083900' => 'pvu', 'Potri.001G117100' => 'ptr', 'Potri.002G147300' => 'ptr', 'Potri.003G115600' => 'ptr', 'Potri.006G087400' => 'ptr', 'Potri.010G226100' => 'ptr', 'Potri.014G069200' => 'ptr', 'Potri.014G104000' => 'ptr', 'Potri.016G100200' => 'ptr', 'Pp3c10_20450' => 'ppa', 'Pp3c1_42400' => 'ppa', 'Pp3c3_24390' => 'ppa', 'Pp3c3_2860' => 'ppa', 'PRCOL_00003193' => 'pco', 'Prupe.2G144500' => 'ppe', 'Prupe.2G195700' => 'ppe', 'Prupe.2G209800' => 'ppe', 'Prupe.5G080000' => 'ppe', 'Prupe.6G257900' => 'ppe', 'Psat3g001160' => 'psa', 'Psat6g181880' => 'psa', 'Psat7g233720' => 'psa', 'PSO063G7587' => 'pso', 'PSO339G2145' => 'pso', 'PSO339G3369' => 'pso', 'PSO478G2747' => 'pso', 'PSO513G0140' => 'pso', 'PSO782G1614' => 'pso', 'PSO782G4889' => 'pso', 'PSO782G5485' => 'pso', 'PSO801G0241' => 'pso', 'QL07p048854' => 'qlo', 'QL08p046745' => 'qlo', 'QL08p052606' => 'qlo', 'QL08p053414' => 'qlo', 'QL08p054868' => 'qlo', 'RcHm_v2.0_Chr1g0350251' => 'rch', 'RcHm_v2.0_Chr1g0360851' => 'rch', 'RcHm_v2.0_Chr1g0362791' => 'rch', 'RcHm_v2.0_Chr3g0466281' => 'rch', 'RcHm_v2.0_Chr7g0201481' => 'rch', 'Rhsim01G0148600' => 'rsi', 'Rhsim05G0194400' => 'rsi', 'Rhsim07G0000700' => 'rsi', 'Rhsim07G0000800' => 'rsi', 'Rhsim07G0027900' => 'rsi', 'Rhsim09G0149500' => 'rsi', 'RhsimUnG0186900' => 'rsi', 'Sabra01G0089900' => 'sbr', 'Sabra02G0114700' => 'sbr', 'Sabra02G0116300' => 'sbr', 'Sabra03G0080100' => 'sbr', 'Sabra08G0024300' => 'sbr', 'Sabra10G0174300' => 'sbr', 'Sabra14G0048900' => 'sbr', 'Sabra14G0076500' => 'sbr', 'SalBow5G2513' => 'sbo', 'Sc01g0002300' => 'sci', 'Sc01g0004450' => 'sci', 'Sc06g0001680' => 'sci', 'Sc23g0003580' => 'sci', 'Sed0000913' => 'sed', 'Sed0001655' => 'sed', 'Sed0007745' => 'sed', 'Sed0010951' => 'sed', 'Sed0017599' => 'sed', 'Sed0021405' => 'sed', 'Sed0022810' => 'sed', 'SEGI_07099' => 'sgi', 'SEGI_11931' => 'sgi', 'SEGI_13187' => 'sgi', 'SEGI_29958' => 'sgi', 'SEGI_36351' => 'sgi', 'SGA_v2.0_scaffold126G33770' => 'sas', 'SGA_v2.0_scaffold153G37003' => 'sas', 'SGA_v2.0_scaffold2G01359' => 'sas', 'SGA_v2.0_scaffold5G03064' => 'sas', 'SGA_v2.0_scaffold95G28903' => 'sas', 'SHI12701' => 'shi', 'SHI26410' => 'shi', 'SHI38997' => 'shi', 'SHI53759' => 'shi', 'SHI53886' => 'shi', 'SHI54714' => 'shi', 'SMO011G0041' => 'smo', 'SMO146G0251' => 'smo', 'SMO160G0004' => 'smo', 'SMO174G0057' => 'smo', 'SMO244G0089' => 'smo', 'SMO296G0011' => 'smo', 'Solyc01g091280.3' => 'sly', 'Solyc05g047610.3' => 'sly', 'Solyc05g047640.3' => 'sly', 'Solyc05g055630.3' => 'sly', 'Solyc10g018160.2' => 'sly', 'Solyc10g084820.2' => 'sly', 'Solyc10g086565.2' => 'sly', 'Sopen01g037030' => 'spe', 'Sopen05g027920' => 'spe', 'Sopen05g034070' => 'spe', 'Sopen10g007260' => 'spe', 'Sopen10g034260' => 'spe', 'Sopen10g035950' => 'spe', 'Sp3g07710' => 'spa', 'Sp4g27420' => 'spa', 'Sp5g02450' => 'spa', 'Sp6g01280' => 'spa', 'Sp6g38480' => 'spa', 'Sp7g20780' => 'spa', 'TAR374G1413' => 'tar', 'TAR623G1777' => 'tar', 'TAR629G2370' => 'tar', 'TAR633G1759' => 'tar', 'TAR636G3387' => 'tar', 'THA.LOC104802447' => 'tha', 'THA.LOC104813916' => 'tha', 'THA.LOC104816423' => 'tha', 'THA.LOC104817246' => 'tha', 'THA.LOC104825895' => 'tha', 'Thecc.01G335200' => 'tca', 'Thecc.01G377400' => 'tca', 'Thecc.03G262200' => 'tca', 'Thecc.05G036800' => 'tca', 'Thecc.10G080500' => 'tca', 'Thecc.10G080800' => 'tca', 'Thhalv10001560m.g' => 'esa', 'Thhalv10006120m.g' => 'esa', 'Thhalv10014375m.g' => 'esa', 'Thhalv10021264m.g' => 'esa', 'Thhalv10028856m.g' => 'esa', 'TPR.G1914' => 'tpr', 'TPR.G4757' => 'tpr', 'TPR.G5595' => 'tpr', 'TWI14G0952' => 'twi', 'TWI14G1307' => 'twi', 'TWI38G2143' => 'twi', 'TWI59G0826' => 'twi', 'TWI77G0527' => 'twi', 'TWI81G0150' => 'twi', 'unitig_21.g21018' => 'ugi', 'unitig_26.g9725' => 'ugi', 'unitig_744.g24653' => 'ugi', 'unitig_749.g13778' => 'ugi', 'unitig_899.g15035' => 'ugi', 'vmacro04296' => 'vma', 'vmacro04852' => 'vma', 'vmacro13404' => 'vma', 'vmacro20169' => 'vma', 'vmacro21014' => 'vma', 'VMungo0331G0237' => 'vmu', 'VMungo0331G0706' => 'vmu', 'VMungo0331G1361' => 'vmu', 'VMungo0331G1489' => 'vmu', 'VMungo0540G1037' => 'vmu', 'VMungo0720G2487' => 'vmu', 'VMungo0720G2721' => 'vmu', 'Zm00001eb086860' => 'zma', 'Zm00001eb104760' => 'zma', 'Zm00001eb148220' => 'zma', 'Zm00001eb259030' => 'zma', 'Zm00001eb289590' => 'zma', 'Zm00001eb420150' => 'zma' ) $gf_id = 'HOM05D000968' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000968' ) $data_identifier = 'HOM05D000968' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 19, 'bol' => (int) 9, 'bra' => (int) 12, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 5, 'ccan' => (int) 7, 'cde' => (int) 5, 'cfa' => (int) 8, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 4, 'dca' => (int) 5, 'din' => (int) 5, 'dzi' => (int) 12, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 25, 'fve' => (int) 5, 'gma' => (int) 9, 'ghi' => (int) 18, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 7, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 5, 'sun' => (int) 2, 'lal' => (int) 9, 'lja' => (int) 5, 'lonja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 9, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 2, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 3, 'stu' => (int) 6, 'pvu' => (int) 4, 'ptr' => (int) 8, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 3, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 1, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 5, 'sas' => (int) 5, 'shi' => (int) 6, 'smo' => (int) 6, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 3, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420150' $species_info = array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ) $local_species = 'gra' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000968', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p31690' => 'bna', 'A03p36040' => 'bna', 'A03p53730' => 'bna', 'A04p01410' => 'bna', 'A05p05420' => 'bna', 'A05p39630' => 'bna', 'A05p39640' => 'bna', 'A09p00970' => 'bna', 'A09p53060' => 'bna', 'A10p31890' => 'bna', 'Aa31LG10G15040' => 'aar', 'Aa31LG1G21090' => 'aar', 'Aa31LG1G26900' => 'aar', 'Aa31LG3G1820' => 'aar', 'Aa31LG5G1100' => 'aar', 'Aa31LG6G4740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2265' => 'aag', 'Actinidia07998' => 'ach', 'Actinidia11266' => 'ach', 'Actinidia12682' => 'ach', 'Actinidia26479' => 'ach', 'Actinidia31406' => 'ach', 'Actinidia32437' => 'ach', 'Actinidia38862' => 'ach', 'Ah.05g174230' => 'amhyb', 'Ah.05g179070' => 'amhyb', 'Ah.05g179090' => 'amhyb', 'Ah.12g059950' => 'amhyb', 'AL3G20480' => 'aly', 'AL4G44520' => 'aly', 'AL5G43110' => 'aly', 'AL6G13890' => 'aly', 'AL6G52620' => 'aly', 'AL7G30830' => 'aly', 'Aqoxy1G00899' => 'aox', 'Aqoxy5G04333' => 'aox', 'Aqoxy7G00641' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3IZ0NN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4EF6AW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W9P8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79GA3M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C43NQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFCU6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G95YVJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCHK29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LU1UG8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX91RN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGB4B1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8DA0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9H7JI' => 'arhy', 'AT3G09320' => 'ath', 'AT3G60800' => 'ath', 'AT4G00840' => 'ath', 'AT4G22750' => 'ath', 'AT5G04270' => 'ath', 'ATR0090G003' => 'atr', 'ATR0559G349' => 'atr', 'ATR0680G261' => 'atr', 'ATR0810G048' => 'atr', 'Atru.chr12.831' => 'acertr', 'Atru.chr5.303' => 'acertr', 'Atru.chr5.748' => 'acertr', 'Atru.chr8.1999' => 'acertr', 'Atru.chr9.1436' => 'acertr', 'AUR62004211' => 'cqu', 'AUR62004548' => 'cqu', 'AUR62013637' => 'cqu', 'AUR62022662' => 'cqu', 'AUR62025777' => 'cqu', 'AUR62042386' => 'cqu', 'BcaB01g02310' => 'bca', 'BcaB01g06062' => 'bca', 'BcaB02g08975' => 'bca', 'BcaB02g08980' => 'bca', 'BcaC01g04228' => 'bca', 'BcaC01g06830' => 'bca', 'BcaC02g10186' => 'bca', 'BcaC02g12214' => 'bca', 'BcaC04g24101' => 'bca', 'BcaC05g29520' => 'bca', 'BcaC05g29661' => 'bca', 'BcaC06g32130' => 'bca', 'BcaC06g32131' => 'bca', 'BcaC07g40601' => 'bca', 'BcaC07g42641' => 'bca', 'BcaNung01038' => 'bca', 'BcaNung01676' => 'bca', 'BcaNung02480' => 'bca', 'BcaNung07376' => 'bca', 'BolC3t16146H' => 'bol', 'BolC3t16637H' => 'bol', 'BolC4t22257H' => 'bol', 'BolC4t24728H' => 'bol', 'BolC5t34517H' => 'bol', 'BolC7t45703H' => 'bol', 'BolC8t51166H' => 'bol', 'BolC9t53038H' => 'bol', 'BolC9t60000H' => 'bol', 'BraA01t01345Z' => 'bra', 'BraA01t01346Z' => 'bra', 'BraA01t01348Z' => 'bra', 'BraA03t12347Z' => 'bra', 'BraA03t12775Z' => 'bra', 'BraA03t14439Z' => 'bra', 'BraA04t15860Z' => 'bra', 'BraA05t19511Z' => 'bra', 'BraA05t22746Z' => 'bra', 'BraA09t35767Z' => 'bra', 'BraA09t40732Z' => 'bra', 'BraA10t45233Z' => 'bra', 'C03p38720' => 'bna', 'C03p43680' => 'bna', 'C04p06350' => 'bna', 'C04p31800' => 'bna', 'C05p58680' => 'bna', 'C07p52110' => 'bna', 'C08p35760' => 'bna', 'C09p01050' => 'bna', 'C09p72600' => 'bna', 'CAN.G106.2' => 'can', 'CAN.G1482.1' => 'can', 'CAN.G324.12' => 'can', 'CAN.G388.20' => 'can', 'CAN.G412.7' => 'can', 'CAN.G694.32' => 'can', 'CAN.G92.12' => 'can', 'CANSAT11G2353' => 'cansat', 'CANSAT21G1398' => 'cansat', 'CANSAT56G2456' => 'cansat', 'CANSAT56G3031' => 'cansat', 'CANSAT56G4539' => 'cansat', 'CARHR083680' => 'chi', 'CARHR171190' => 'chi', 'CARHR209010' => 'chi', 'CARHR229680' => 'chi', 'CARHR249490' => 'chi', 'Carub.0003s0844' => 'cru', 'Carub.0005s2755' => 'cru', 'Carub.0006s0322' => 'cru', 'Carub.0006s3586' => 'cru', 'Carub.0007s1855' => 'cru', 'Ca_07808_v3' => 'car', 'Ca_09535_v3' => 'car', 'Ca_10548_v3' => 'car', 'Ca_19913_v3' => 'car', 'Ca_19916_v3' => 'car', 'Ca_19975_v3' => 'car', 'CBR_g22876' => 'cbr', 'CBR_g22879' => 'cbr', 'CBR_g38491' => 'cbr', 'CBR_g54185' => 'cbr', 'CBR_g54190' => 'cbr', 'Cc02_g11020' => 'ccan', 'Cc02_g23920' => 'ccan', 'Cc02_g39860' => 'ccan', 'Cc02_g39870' => 'ccan', 'Cc03_g06760' => 'ccan', 'Cc06_g02450' => 'ccan', 'Cc09_g09450' => 'ccan', 'CDE02G1959' => 'cde', 'CDE04G0600' => 'cde', 'CDE07G1996' => 'cde', 'CDE07G2078' => 'cde', 'CDE11G0611' => 'cde', 'Cfa001683' => 'cfa', 'Cfa001734' => 'cfa', 'Cfa001737' => 'cfa', 'Cfa003751' => 'cfa', 'Cfa012019' => 'cfa', 'Cfa017353' => 'cfa', 'Cfa017732' => 'cfa', 'Cfa022464' => 'cfa', 'Ciclev10012400m.g' => 'ccl', 'Ciclev10021242m.g' => 'ccl', 'Ciclev10021302m.g' => 'ccl', 'Ciclev10021463m.g' => 'ccl', 'Ciclev10032359m.g' => 'ccl', 'CiPaw.01G081000' => 'cil', 'CiPaw.01G262500' => 'cil', 'CiPaw.01G269800' => 'cil', 'CiPaw.02G168400' => 'cil', 'CiPaw.05G119500' => 'cil', 'CiPaw.11G147300' => 'cil', 'ClCG01G003630' => 'cla', 'ClCG05G000510' => 'cla', 'ClCG05G002300' => 'cla', 'ClCG08G007650' => 'cla', 'ClCG10G021250' => 'cla', 'COL.COLO4_06218' => 'col', 'COL.COLO4_12538' => 'col', 'COL.COLO4_14775' => 'col', 'COL.COLO4_23875' => 'col', 'Cpa.g.sc141.16' => 'cpa', 'Cpa.g.sc169.16' => 'cpa', 'Cpa.g.sc244.4' => 'cpa', 'Cpa.g.sc244.5' => 'cpa', 'Cpa.g.sc29.87' => 'cpa', 'Cpa.g.sc53.115' => 'cpa', 'Cre03.g207502' => 'cre', 'Cre06.g277000' => 'cre', 'Cre09.g394050' => 'cre', 'CsaV3_3G007680' => 'csa', 'CsaV3_3G009710' => 'csa', 'CsaV3_3G034790' => 'csa', 'CsaV3_5G003750' => 'csa', 'CsaV3_6G036620' => 'csa', 'CSS0002288' => 'camsi', 'CSS0011250' => 'camsi', 'CSS0021619' => 'camsi', 'CSS0046701' => 'camsi', 'DCAR_006420' => 'dca', 'DCAR_006865' => 'dca', 'DCAR_008558' => 'dca', 'DCAR_028754' => 'dca', 'DCAR_028755' => 'dca', 'Dinv31218' => 'din', 'Dinv32371' => 'din', 'Dinv34250' => 'din', 'Dinv37156' => 'din', 'Dinv43704' => 'din', 'Duzib093G1811' => 'dzi', 'Duzib106G1622' => 'dzi', 'Duzib114G0504' => 'dzi', 'Duzib128G0338' => 'dzi', 'Duzib128G1577' => 'dzi', 'Duzib133G0104' => 'dzi', 'Duzib133G1080' => 'dzi', 'Duzib138G0324' => 'dzi', 'Duzib138G0394' => 'dzi', 'Duzib205G0122' => 'dzi', 'Duzib268G1020' => 'dzi', 'Duzib268G1359' => 'dzi', 'ECA232G3929' => 'eca', 'ECA236G2210' => 'eca', 'ECA236G2287' => 'eca', 'ECA240G4568' => 'eca', 'ECA247G0894' => 'eca', 'EL10Ac1g00200' => 'bvu', 'EL10Ac1g00886' => 'bvu', 'EL10As1g23091' => 'bvu', 'EL10As1g23092' => 'bvu', 'Eucgr.A01284' => 'egr', 'Eucgr.A01285' => 'egr', 'Eucgr.D02456' => 'egr', 'Eucgr.E00018' => 'egr', 'Eucgr.E01439' => 'egr', 'Eucgr.G02859' => 'egr', 'FAN01G0168' => 'fan', 'FAN01G0453' => 'fan', 'FAN01G2761' => 'fan', 'FAN02G1239' => 'fan', 'FAN03G0645' => 'fan', 'FAN03G2707' => 'fan', 'FAN03G2978' => 'fan', 'FAN04G0227' => 'fan', 'FAN06G0091' => 'fan', 'FAN06G1418' => 'fan', 'FAN06G1512' => 'fan', 'FAN06G1986' => 'fan', 'FAN06G2905' => 'fan', 'FAN06G4325' => 'fan', 'FAN08G0033' => 'fan', 'FAN09G0642' => 'fan', 'FAN10G1763' => 'fan', 'FAN10G2026' => 'fan', 'FAN10G2513' => 'fan', 'FAN10G3402' => 'fan', 'FAN10G3564' => 'fan', 'FAN10G3987' => 'fan', 'FAN13G1490' => 'fan', 'FAN14G5857' => 'fan', 'FAN18G1188' => 'fan', 'FvH4_5g00750' => 'fve', 'FvH4_6g13410' => 'fve', 'FvH4_7g11740' => 'fve', 'FvH4_7g17410' => 'fve', 'FvH4_7g18860' => 'fve', 'Glyma.01G099100' => 'gma', 'Glyma.01G142300' => 'gma', 'Glyma.03G025500' => 'gma', 'Glyma.03G069700' => 'gma', 'Glyma.03G260000' => 'gma', 'Glyma.09G269800' => 'gma', 'Glyma.10G208700' => 'gma', 'Glyma.18G220400' => 'gma', 'Glyma.20G182000' => 'gma', 'Gohir.A01G221726' => 'ghi', 'Gohir.A07G134600' => 'ghi', 'Gohir.A07G146000' => 'ghi', 'Gohir.A08G173900' => 'ghi', 'Gohir.A09G194900' => 'ghi', 'Gohir.A10G204100' => 'ghi', 'Gohir.A11G080600' => 'ghi', 'Gohir.A11G327500' => 'ghi', 'Gohir.A12G101800' => 'ghi', 'Gohir.D01G211200' => 'ghi', 'Gohir.D07G139200' => 'ghi', 'Gohir.D07G152100' => 'ghi', 'Gohir.D08G192600' => 'ghi', 'Gohir.D09G189200' => 'ghi', 'Gohir.D10G212000' => 'ghi', 'Gohir.D11G085200' => 'ghi', 'Gohir.D11G346400' => 'ghi', 'Gohir.D12G104800' => 'ghi', 'Gorai.001G151300' => 'gra', 'Gorai.001G174100' => 'gra', 'Gorai.002G257000' => 'gra', 'Gorai.004G202600' => 'gra', 'Gorai.007G090900' => 'gra', 'Gorai.007G376700' => 'gra', 'Gorai.008G114100' => 'gra', 'Gorai.011G237900' => 'gra', 'GSVIVG01005450001' => 'vvi', 'GSVIVG01016232001' => 'vvi', 'GSVIVG01026157001' => 'vvi', 'GSVIVG01027419001' => 'vvi', 'GSVIVG01027631001' => 'vvi', 'GSVIVG01034143001' => 'vvi', 'HanXRQChr03g0093921' => 'han', 'HanXRQChr04g0120001' => 'han', 'HanXRQChr04g0122561' => 'han', 'HanXRQChr09g0246851' => 'han', 'HanXRQChr10g0293311' => 'han', 'HanXRQChr13g0425231' => 'han', 'HanXRQChr16g0532571' => 'han', 'Haze_09050' => 'cav', 'Haze_15715' => 'cav', 'Haze_15716' => 'cav', 'Haze_16803' => 'cav', 'Haze_16850' => 'cav', 'Hma1.2p1_0301F.1_g118655' => 'hma', 'Hma1.2p1_0309F.1_g120590' => 'hma', 'Hma1.2p1_0936F.1_g238900' => 'hma', 'Hma1.2p1_3552F.1_g336740' => 'hma', 'HPP92_003520' => 'vpl', 'HPP92_006628' => 'vpl', 'HPP92_006645' => 'vpl', 'HPP92_014669' => 'vpl', 'HPP92_015077' => 'vpl', 'Hund16742' => 'sun', 'Hund17022' => 'sun', 'Lalb_Chr02g0152131' => 'lal', 'Lalb_Chr05g0225371' => 'lal', 'Lalb_Chr07g0189841' => 'lal', 'Lalb_Chr07g0192961' => 'lal', 'Lalb_Chr12g0208221' => 'lal', 'Lalb_Chr13g0291211' => 'lal', 'Lalb_Chr13g0291781' => 'lal', 'Lalb_Chr18g0044651' => 'lal', 'Lalb_Chr21g0313731' => 'lal', 'Lj1g0022533' => 'lja', 'Lj2A18T50' => 'lonja', 'Lj2A92G93' => 'lonja', 'Lj3A965T73' => 'lonja', 'Lj3g0000673' => 'lja', 'Lj3g0002666' => 'lja', 'Lj4g0016985' => 'lja', 'Lj5g0003625' => 'lja', 'Lj7A529G36' => 'lonja', 'Lj9A569T49' => 'lonja', 'Lj9A604T63' => 'lonja', 'Lsat_1_v5_gn_3_132060' => 'lsa', 'Lsat_1_v5_gn_4_68941' => 'lsa', 'Lsat_1_v5_gn_5_95580' => 'lsa', 'Lsat_1_v5_gn_7_161' => 'lsa', 'Lsat_1_v5_gn_7_7041' => 'lsa', 'Lsat_1_v5_gn_9_33481' => 'lsa', 'Lsat_1_v5_gn_9_68260' => 'lsa', 'Manes.01G073100' => 'mes', 'Manes.01G266300' => 'mes', 'Manes.02G033300' => 'mes', 'Manes.05G017900' => 'mes', 'Manes.05G046100' => 'mes', 'Manes.08G080900' => 'mes', 'Manes.10G049400' => 'mes', 'Mapoly0009s0186' => 'mpo', 'Mapoly0036s0118' => 'mpo', 'Mapoly0101s0046' => 'mpo', 'MBI04_g30218_MAGBIO' => 'mbi', 'MBI04_g35564_MAGBIO' => 'mbi', 'MBI12_g34011_MAGBIO' => 'mbi', 'MBI14_g04655_MAGBIO' => 'mbi', 'MCO07G653' => 'mco', 'MCO10G173' => 'mco', 'MD01G1087100' => 'mdo', 'MD01G1104200' => 'mdo', 'MD02G1205100' => 'mdo', 'MD04G1079200' => 'mdo', 'MD04G1131400' => 'mdo', 'MD07G1121600' => 'mdo', 'MD07G1157300' => 'mdo', 'MD07G1171000' => 'mdo', 'MD12G1144500' => 'mdo', 'Medtr1g094610' => 'mtr', 'Medtr4g021795' => 'mtr', 'Medtr4g023760' => 'mtr', 'Medtr7g118050' => 'mtr', 'MELO3C005582.2' => 'cme', 'MELO3C005989.2' => 'cme', 'MELO3C006192.2' => 'cme', 'MELO3C009248.2' => 'cme', 'MELO3C019817.2' => 'cme', 'Migut.B01625' => 'egut', 'Migut.B01915' => 'egut', 'Migut.F01721' => 'egut', 'Migut.J00314' => 'egut', 'MSTRG.20742' => 'ama', 'MSTRG.8134' => 'ama', 'Nitab4.5_0000096g0010' => 'nta', 'Nitab4.5_0000202g0030' => 'nta', 'Nitab4.5_0000216g0370' => 'nta', 'Nitab4.5_0000457g0230' => 'nta', 'Nitab4.5_0001702g0170' => 'nta', 'Nitab4.5_0003607g0010' => 'nta', 'Nitab4.5_0004917g0020' => 'nta', 'Nitab4.5_0007059g0010' => 'nta', 'Nitab4.5_0007184g0010' => 'nta', 'Nitab4.5_0007346g0020' => 'nta', 'Nn1g00410' => 'nnu', 'Nn1g01252' => 'nnu', 'Nn2g11168' => 'nnu', 'Nn2g13403' => 'nnu', 'Nn2g13760' => 'nnu', 'Nn4g26380' => 'nnu', 'Oeu000806.2' => 'oeu', 'Oeu005788.1' => 'oeu', 'Oeu006900.3' => 'oeu', 'Oeu007797.1' => 'oeu', 'Oeu011932.1' => 'oeu', 'Oeu022739.1' => 'oeu', 'Oeu037918.1' => 'oeu', 'Oeu055490.2' => 'oeu', 'Os01g0844400' => 'osa', 'Os02g0819100' => 'osa', 'Os03g0804300' => 'osa', 'Os05g0458000' => 'osa', 'Os07g0467800' => 'osa', 'Os12g0602200' => 'osa', 'Peaxi162Scf00013g03444' => 'pax', 'Peaxi162Scf00094g01120' => 'pax', 'Peaxi162Scf00191g01211' => 'pax', 'Peaxi162Scf00238g01110' => 'pax', 'Peaxi162Scf00330g00719' => 'pax', 'Peaxi162Scf00627g00018' => 'pax', 'PGR031G2686' => 'pgr', 'PGR042G0809' => 'pgr', 'PGR142G0193' => 'pgr', 'PGSC0003DMG400011066' => 'stu', 'PGSC0003DMG400012041' => 'stu', 'PGSC0003DMG400013678' => 'stu', 'PGSC0003DMG400023477' => 'stu', 'PGSC0003DMG400025956' => 'stu', 'PGSC0003DMG401019151' => 'stu', 'Phvul.006G116400' => 'pvu', 'Phvul.007G097300' => 'pvu', 'Phvul.010G015000' => 'pvu', 'Phvul.010G083900' => 'pvu', 'Potri.001G117100' => 'ptr', 'Potri.002G147300' => 'ptr', 'Potri.003G115600' => 'ptr', 'Potri.006G087400' => 'ptr', 'Potri.010G226100' => 'ptr', 'Potri.014G069200' => 'ptr', 'Potri.014G104000' => 'ptr', 'Potri.016G100200' => 'ptr', 'Pp3c10_20450' => 'ppa', 'Pp3c1_42400' => 'ppa', 'Pp3c3_24390' => 'ppa', 'Pp3c3_2860' => 'ppa', 'PRCOL_00003193' => 'pco', 'Prupe.2G144500' => 'ppe', 'Prupe.2G195700' => 'ppe', 'Prupe.2G209800' => 'ppe', 'Prupe.5G080000' => 'ppe', 'Prupe.6G257900' => 'ppe', 'Psat3g001160' => 'psa', 'Psat6g181880' => 'psa', 'Psat7g233720' => 'psa', 'PSO063G7587' => 'pso', 'PSO339G2145' => 'pso', 'PSO339G3369' => 'pso', 'PSO478G2747' => 'pso', 'PSO513G0140' => 'pso', 'PSO782G1614' => 'pso', 'PSO782G4889' => 'pso', 'PSO782G5485' => 'pso', 'PSO801G0241' => 'pso', 'QL07p048854' => 'qlo', 'QL08p046745' => 'qlo', 'QL08p052606' => 'qlo', 'QL08p053414' => 'qlo', 'QL08p054868' => 'qlo', 'RcHm_v2.0_Chr1g0350251' => 'rch', 'RcHm_v2.0_Chr1g0360851' => 'rch', 'RcHm_v2.0_Chr1g0362791' => 'rch', 'RcHm_v2.0_Chr3g0466281' => 'rch', 'RcHm_v2.0_Chr7g0201481' => 'rch', 'Rhsim01G0148600' => 'rsi', 'Rhsim05G0194400' => 'rsi', 'Rhsim07G0000700' => 'rsi', 'Rhsim07G0000800' => 'rsi', 'Rhsim07G0027900' => 'rsi', 'Rhsim09G0149500' => 'rsi', 'RhsimUnG0186900' => 'rsi', 'Sabra01G0089900' => 'sbr', 'Sabra02G0114700' => 'sbr', 'Sabra02G0116300' => 'sbr', 'Sabra03G0080100' => 'sbr', 'Sabra08G0024300' => 'sbr', 'Sabra10G0174300' => 'sbr', 'Sabra14G0048900' => 'sbr', 'Sabra14G0076500' => 'sbr', 'SalBow5G2513' => 'sbo', 'Sc01g0002300' => 'sci', 'Sc01g0004450' => 'sci', 'Sc06g0001680' => 'sci', 'Sc23g0003580' => 'sci', 'Sed0000913' => 'sed', 'Sed0001655' => 'sed', 'Sed0007745' => 'sed', 'Sed0010951' => 'sed', 'Sed0017599' => 'sed', 'Sed0021405' => 'sed', 'Sed0022810' => 'sed', 'SEGI_07099' => 'sgi', 'SEGI_11931' => 'sgi', 'SEGI_13187' => 'sgi', 'SEGI_29958' => 'sgi', 'SEGI_36351' => 'sgi', 'SGA_v2.0_scaffold126G33770' => 'sas', 'SGA_v2.0_scaffold153G37003' => 'sas', 'SGA_v2.0_scaffold2G01359' => 'sas', 'SGA_v2.0_scaffold5G03064' => 'sas', 'SGA_v2.0_scaffold95G28903' => 'sas', 'SHI12701' => 'shi', 'SHI26410' => 'shi', 'SHI38997' => 'shi', 'SHI53759' => 'shi', 'SHI53886' => 'shi', 'SHI54714' => 'shi', 'SMO011G0041' => 'smo', 'SMO146G0251' => 'smo', 'SMO160G0004' => 'smo', 'SMO174G0057' => 'smo', 'SMO244G0089' => 'smo', 'SMO296G0011' => 'smo', 'Solyc01g091280.3' => 'sly', 'Solyc05g047610.3' => 'sly', 'Solyc05g047640.3' => 'sly', 'Solyc05g055630.3' => 'sly', 'Solyc10g018160.2' => 'sly', 'Solyc10g084820.2' => 'sly', 'Solyc10g086565.2' => 'sly', 'Sopen01g037030' => 'spe', 'Sopen05g027920' => 'spe', 'Sopen05g034070' => 'spe', 'Sopen10g007260' => 'spe', 'Sopen10g034260' => 'spe', 'Sopen10g035950' => 'spe', 'Sp3g07710' => 'spa', 'Sp4g27420' => 'spa', 'Sp5g02450' => 'spa', 'Sp6g01280' => 'spa', 'Sp6g38480' => 'spa', 'Sp7g20780' => 'spa', 'TAR374G1413' => 'tar', 'TAR623G1777' => 'tar', 'TAR629G2370' => 'tar', 'TAR633G1759' => 'tar', 'TAR636G3387' => 'tar', 'THA.LOC104802447' => 'tha', 'THA.LOC104813916' => 'tha', 'THA.LOC104816423' => 'tha', 'THA.LOC104817246' => 'tha', 'THA.LOC104825895' => 'tha', 'Thecc.01G335200' => 'tca', 'Thecc.01G377400' => 'tca', 'Thecc.03G262200' => 'tca', 'Thecc.05G036800' => 'tca', 'Thecc.10G080500' => 'tca', 'Thecc.10G080800' => 'tca', 'Thhalv10001560m.g' => 'esa', 'Thhalv10006120m.g' => 'esa', 'Thhalv10014375m.g' => 'esa', 'Thhalv10021264m.g' => 'esa', 'Thhalv10028856m.g' => 'esa', 'TPR.G1914' => 'tpr', 'TPR.G4757' => 'tpr', 'TPR.G5595' => 'tpr', 'TWI14G0952' => 'twi', 'TWI14G1307' => 'twi', 'TWI38G2143' => 'twi', 'TWI59G0826' => 'twi', 'TWI77G0527' => 'twi', 'TWI81G0150' => 'twi', 'unitig_21.g21018' => 'ugi', 'unitig_26.g9725' => 'ugi', 'unitig_744.g24653' => 'ugi', 'unitig_749.g13778' => 'ugi', 'unitig_899.g15035' => 'ugi', 'vmacro04296' => 'vma', 'vmacro04852' => 'vma', 'vmacro13404' => 'vma', 'vmacro20169' => 'vma', 'vmacro21014' => 'vma', 'VMungo0331G0237' => 'vmu', 'VMungo0331G0706' => 'vmu', 'VMungo0331G1361' => 'vmu', 'VMungo0331G1489' => 'vmu', 'VMungo0540G1037' => 'vmu', 'VMungo0720G2487' => 'vmu', 'VMungo0720G2721' => 'vmu', 'Zm00001eb086860' => 'zma', 'Zm00001eb104760' => 'zma', 'Zm00001eb148220' => 'zma', 'Zm00001eb259030' => 'zma', 'Zm00001eb289590' => 'zma', 'Zm00001eb420150' => 'zma' ), 'gf_id' => 'HOM05D000968', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000968' ), 'data_identifier' => 'HOM05D000968', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000968', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p31690' => 'bna', 'A03p36040' => 'bna', 'A03p53730' => 'bna', 'A04p01410' => 'bna', 'A05p05420' => 'bna', 'A05p39630' => 'bna', 'A05p39640' => 'bna', 'A09p00970' => 'bna', 'A09p53060' => 'bna', 'A10p31890' => 'bna', 'Aa31LG10G15040' => 'aar', 'Aa31LG1G21090' => 'aar', 'Aa31LG1G26900' => 'aar', 'Aa31LG3G1820' => 'aar', 'Aa31LG5G1100' => 'aar', 'Aa31LG6G4740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2265' => 'aag', 'Actinidia07998' => 'ach', 'Actinidia11266' => 'ach', 'Actinidia12682' => 'ach', 'Actinidia26479' => 'ach', 'Actinidia31406' => 'ach', 'Actinidia32437' => 'ach', 'Actinidia38862' => 'ach', 'Ah.05g174230' => 'amhyb', 'Ah.05g179070' => 'amhyb', 'Ah.05g179090' => 'amhyb', 'Ah.12g059950' => 'amhyb', 'AL3G20480' => 'aly', 'AL4G44520' => 'aly', 'AL5G43110' => 'aly', 'AL6G13890' => 'aly', 'AL6G52620' => 'aly', 'AL7G30830' => 'aly', 'Aqoxy1G00899' => 'aox', 'Aqoxy5G04333' => 'aox', 'Aqoxy7G00641' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3IZ0NN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4EF6AW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W9P8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79GA3M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C43NQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFCU6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G95YVJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCHK29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LU1UG8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX91RN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGB4B1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8DA0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9H7JI' => 'arhy', 'AT3G09320' => 'ath', 'AT3G60800' => 'ath', 'AT4G00840' => 'ath', 'AT4G22750' => 'ath', 'AT5G04270' => 'ath', 'ATR0090G003' => 'atr', 'ATR0559G349' => 'atr', 'ATR0680G261' => 'atr', 'ATR0810G048' => 'atr', 'Atru.chr12.831' => 'acertr', 'Atru.chr5.303' => 'acertr', 'Atru.chr5.748' => 'acertr', 'Atru.chr8.1999' => 'acertr', 'Atru.chr9.1436' => 'acertr', 'AUR62004211' => 'cqu', 'AUR62004548' => 'cqu', 'AUR62013637' => 'cqu', 'AUR62022662' => 'cqu', 'AUR62025777' => 'cqu', 'AUR62042386' => 'cqu', 'BcaB01g02310' => 'bca', 'BcaB01g06062' => 'bca', 'BcaB02g08975' => 'bca', 'BcaB02g08980' => 'bca', 'BcaC01g04228' => 'bca', 'BcaC01g06830' => 'bca', 'BcaC02g10186' => 'bca', 'BcaC02g12214' => 'bca', 'BcaC04g24101' => 'bca', 'BcaC05g29520' => 'bca', 'BcaC05g29661' => 'bca', 'BcaC06g32130' => 'bca', 'BcaC06g32131' => 'bca', 'BcaC07g40601' => 'bca', 'BcaC07g42641' => 'bca', 'BcaNung01038' => 'bca', 'BcaNung01676' => 'bca', 'BcaNung02480' => 'bca', 'BcaNung07376' => 'bca', 'BolC3t16146H' => 'bol', 'BolC3t16637H' => 'bol', 'BolC4t22257H' => 'bol', 'BolC4t24728H' => 'bol', 'BolC5t34517H' => 'bol', 'BolC7t45703H' => 'bol', 'BolC8t51166H' => 'bol', 'BolC9t53038H' => 'bol', 'BolC9t60000H' => 'bol', 'BraA01t01345Z' => 'bra', 'BraA01t01346Z' => 'bra', 'BraA01t01348Z' => 'bra', 'BraA03t12347Z' => 'bra', 'BraA03t12775Z' => 'bra', 'BraA03t14439Z' => 'bra', 'BraA04t15860Z' => 'bra', 'BraA05t19511Z' => 'bra', 'BraA05t22746Z' => 'bra', 'BraA09t35767Z' => 'bra', 'BraA09t40732Z' => 'bra', 'BraA10t45233Z' => 'bra', 'C03p38720' => 'bna', 'C03p43680' => 'bna', 'C04p06350' => 'bna', 'C04p31800' => 'bna', 'C05p58680' => 'bna', 'C07p52110' => 'bna', 'C08p35760' => 'bna', 'C09p01050' => 'bna', 'C09p72600' => 'bna', 'CAN.G106.2' => 'can', 'CAN.G1482.1' => 'can', 'CAN.G324.12' => 'can', 'CAN.G388.20' => 'can', 'CAN.G412.7' => 'can', 'CAN.G694.32' => 'can', 'CAN.G92.12' => 'can', 'CANSAT11G2353' => 'cansat', 'CANSAT21G1398' => 'cansat', 'CANSAT56G2456' => 'cansat', 'CANSAT56G3031' => 'cansat', 'CANSAT56G4539' => 'cansat', 'CARHR083680' => 'chi', 'CARHR171190' => 'chi', 'CARHR209010' => 'chi', 'CARHR229680' => 'chi', 'CARHR249490' => 'chi', 'Carub.0003s0844' => 'cru', 'Carub.0005s2755' => 'cru', 'Carub.0006s0322' => 'cru', 'Carub.0006s3586' => 'cru', 'Carub.0007s1855' => 'cru', 'Ca_07808_v3' => 'car', 'Ca_09535_v3' => 'car', 'Ca_10548_v3' => 'car', 'Ca_19913_v3' => 'car', 'Ca_19916_v3' => 'car', 'Ca_19975_v3' => 'car', 'CBR_g22876' => 'cbr', 'CBR_g22879' => 'cbr', 'CBR_g38491' => 'cbr', 'CBR_g54185' => 'cbr', 'CBR_g54190' => 'cbr', 'Cc02_g11020' => 'ccan', 'Cc02_g23920' => 'ccan', 'Cc02_g39860' => 'ccan', 'Cc02_g39870' => 'ccan', 'Cc03_g06760' => 'ccan', 'Cc06_g02450' => 'ccan', 'Cc09_g09450' => 'ccan', 'CDE02G1959' => 'cde', 'CDE04G0600' => 'cde', 'CDE07G1996' => 'cde', 'CDE07G2078' => 'cde', 'CDE11G0611' => 'cde', 'Cfa001683' => 'cfa', 'Cfa001734' => 'cfa', 'Cfa001737' => 'cfa', 'Cfa003751' => 'cfa', 'Cfa012019' => 'cfa', 'Cfa017353' => 'cfa', 'Cfa017732' => 'cfa', 'Cfa022464' => 'cfa', 'Ciclev10012400m.g' => 'ccl', 'Ciclev10021242m.g' => 'ccl', 'Ciclev10021302m.g' => 'ccl', 'Ciclev10021463m.g' => 'ccl', 'Ciclev10032359m.g' => 'ccl', 'CiPaw.01G081000' => 'cil', 'CiPaw.01G262500' => 'cil', 'CiPaw.01G269800' => 'cil', 'CiPaw.02G168400' => 'cil', 'CiPaw.05G119500' => 'cil', 'CiPaw.11G147300' => 'cil', 'ClCG01G003630' => 'cla', 'ClCG05G000510' => 'cla', 'ClCG05G002300' => 'cla', 'ClCG08G007650' => 'cla', 'ClCG10G021250' => 'cla', 'COL.COLO4_06218' => 'col', 'COL.COLO4_12538' => 'col', 'COL.COLO4_14775' => 'col', 'COL.COLO4_23875' => 'col', 'Cpa.g.sc141.16' => 'cpa', 'Cpa.g.sc169.16' => 'cpa', 'Cpa.g.sc244.4' => 'cpa', 'Cpa.g.sc244.5' => 'cpa', 'Cpa.g.sc29.87' => 'cpa', 'Cpa.g.sc53.115' => 'cpa', 'Cre03.g207502' => 'cre', 'Cre06.g277000' => 'cre', 'Cre09.g394050' => 'cre', 'CsaV3_3G007680' => 'csa', 'CsaV3_3G009710' => 'csa', 'CsaV3_3G034790' => 'csa', 'CsaV3_5G003750' => 'csa', 'CsaV3_6G036620' => 'csa', 'CSS0002288' => 'camsi', 'CSS0011250' => 'camsi', 'CSS0021619' => 'camsi', 'CSS0046701' => 'camsi', 'DCAR_006420' => 'dca', 'DCAR_006865' => 'dca', 'DCAR_008558' => 'dca', 'DCAR_028754' => 'dca', 'DCAR_028755' => 'dca', 'Dinv31218' => 'din', 'Dinv32371' => 'din', 'Dinv34250' => 'din', 'Dinv37156' => 'din', 'Dinv43704' => 'din', 'Duzib093G1811' => 'dzi', 'Duzib106G1622' => 'dzi', 'Duzib114G0504' => 'dzi', 'Duzib128G0338' => 'dzi', 'Duzib128G1577' => 'dzi', 'Duzib133G0104' => 'dzi', 'Duzib133G1080' => 'dzi', 'Duzib138G0324' => 'dzi', 'Duzib138G0394' => 'dzi', 'Duzib205G0122' => 'dzi', 'Duzib268G1020' => 'dzi', 'Duzib268G1359' => 'dzi', 'ECA232G3929' => 'eca', 'ECA236G2210' => 'eca', 'ECA236G2287' => 'eca', 'ECA240G4568' => 'eca', 'ECA247G0894' => 'eca', 'EL10Ac1g00200' => 'bvu', 'EL10Ac1g00886' => 'bvu', 'EL10As1g23091' => 'bvu', 'EL10As1g23092' => 'bvu', 'Eucgr.A01284' => 'egr', 'Eucgr.A01285' => 'egr', 'Eucgr.D02456' => 'egr', 'Eucgr.E00018' => 'egr', 'Eucgr.E01439' => 'egr', 'Eucgr.G02859' => 'egr', 'FAN01G0168' => 'fan', 'FAN01G0453' => 'fan', 'FAN01G2761' => 'fan', 'FAN02G1239' => 'fan', 'FAN03G0645' => 'fan', 'FAN03G2707' => 'fan', 'FAN03G2978' => 'fan', 'FAN04G0227' => 'fan', 'FAN06G0091' => 'fan', 'FAN06G1418' => 'fan', 'FAN06G1512' => 'fan', 'FAN06G1986' => 'fan', 'FAN06G2905' => 'fan', 'FAN06G4325' => 'fan', 'FAN08G0033' => 'fan', 'FAN09G0642' => 'fan', 'FAN10G1763' => 'fan', 'FAN10G2026' => 'fan', 'FAN10G2513' => 'fan', 'FAN10G3402' => 'fan', 'FAN10G3564' => 'fan', 'FAN10G3987' => 'fan', 'FAN13G1490' => 'fan', 'FAN14G5857' => 'fan', 'FAN18G1188' => 'fan', 'FvH4_5g00750' => 'fve', 'FvH4_6g13410' => 'fve', 'FvH4_7g11740' => 'fve', 'FvH4_7g17410' => 'fve', 'FvH4_7g18860' => 'fve', 'Glyma.01G099100' => 'gma', 'Glyma.01G142300' => 'gma', 'Glyma.03G025500' => 'gma', 'Glyma.03G069700' => 'gma', 'Glyma.03G260000' => 'gma', 'Glyma.09G269800' => 'gma', 'Glyma.10G208700' => 'gma', 'Glyma.18G220400' => 'gma', 'Glyma.20G182000' => 'gma', 'Gohir.A01G221726' => 'ghi', 'Gohir.A07G134600' => 'ghi', 'Gohir.A07G146000' => 'ghi', 'Gohir.A08G173900' => 'ghi', 'Gohir.A09G194900' => 'ghi', 'Gohir.A10G204100' => 'ghi', 'Gohir.A11G080600' => 'ghi', 'Gohir.A11G327500' => 'ghi', 'Gohir.A12G101800' => 'ghi', 'Gohir.D01G211200' => 'ghi', 'Gohir.D07G139200' => 'ghi', 'Gohir.D07G152100' => 'ghi', 'Gohir.D08G192600' => 'ghi', 'Gohir.D09G189200' => 'ghi', 'Gohir.D10G212000' => 'ghi', 'Gohir.D11G085200' => 'ghi', 'Gohir.D11G346400' => 'ghi', 'Gohir.D12G104800' => 'ghi', 'Gorai.001G151300' => 'gra', 'Gorai.001G174100' => 'gra', 'Gorai.002G257000' => 'gra', 'Gorai.004G202600' => 'gra', 'Gorai.007G090900' => 'gra', 'Gorai.007G376700' => 'gra', 'Gorai.008G114100' => 'gra', 'Gorai.011G237900' => 'gra', 'GSVIVG01005450001' => 'vvi', 'GSVIVG01016232001' => 'vvi', 'GSVIVG01026157001' => 'vvi', 'GSVIVG01027419001' => 'vvi', 'GSVIVG01027631001' => 'vvi', 'GSVIVG01034143001' => 'vvi', 'HanXRQChr03g0093921' => 'han', 'HanXRQChr04g0120001' => 'han', 'HanXRQChr04g0122561' => 'han', 'HanXRQChr09g0246851' => 'han', 'HanXRQChr10g0293311' => 'han', 'HanXRQChr13g0425231' => 'han', 'HanXRQChr16g0532571' => 'han', 'Haze_09050' => 'cav', 'Haze_15715' => 'cav', 'Haze_15716' => 'cav', 'Haze_16803' => 'cav', 'Haze_16850' => 'cav', 'Hma1.2p1_0301F.1_g118655' => 'hma', 'Hma1.2p1_0309F.1_g120590' => 'hma', 'Hma1.2p1_0936F.1_g238900' => 'hma', 'Hma1.2p1_3552F.1_g336740' => 'hma', 'HPP92_003520' => 'vpl', 'HPP92_006628' => 'vpl', 'HPP92_006645' => 'vpl', 'HPP92_014669' => 'vpl', 'HPP92_015077' => 'vpl', 'Hund16742' => 'sun', 'Hund17022' => 'sun', 'Lalb_Chr02g0152131' => 'lal', 'Lalb_Chr05g0225371' => 'lal', 'Lalb_Chr07g0189841' => 'lal', 'Lalb_Chr07g0192961' => 'lal', 'Lalb_Chr12g0208221' => 'lal', 'Lalb_Chr13g0291211' => 'lal', 'Lalb_Chr13g0291781' => 'lal', 'Lalb_Chr18g0044651' => 'lal', 'Lalb_Chr21g0313731' => 'lal', 'Lj1g0022533' => 'lja', 'Lj2A18T50' => 'lonja', 'Lj2A92G93' => 'lonja', 'Lj3A965T73' => 'lonja', 'Lj3g0000673' => 'lja', 'Lj3g0002666' => 'lja', 'Lj4g0016985' => 'lja', 'Lj5g0003625' => 'lja', 'Lj7A529G36' => 'lonja', 'Lj9A569T49' => 'lonja', 'Lj9A604T63' => 'lonja', 'Lsat_1_v5_gn_3_132060' => 'lsa', 'Lsat_1_v5_gn_4_68941' => 'lsa', 'Lsat_1_v5_gn_5_95580' => 'lsa', 'Lsat_1_v5_gn_7_161' => 'lsa', 'Lsat_1_v5_gn_7_7041' => 'lsa', 'Lsat_1_v5_gn_9_33481' => 'lsa', 'Lsat_1_v5_gn_9_68260' => 'lsa', 'Manes.01G073100' => 'mes', 'Manes.01G266300' => 'mes', 'Manes.02G033300' => 'mes', 'Manes.05G017900' => 'mes', 'Manes.05G046100' => 'mes', 'Manes.08G080900' => 'mes', 'Manes.10G049400' => 'mes', 'Mapoly0009s0186' => 'mpo', 'Mapoly0036s0118' => 'mpo', 'Mapoly0101s0046' => 'mpo', 'MBI04_g30218_MAGBIO' => 'mbi', 'MBI04_g35564_MAGBIO' => 'mbi', 'MBI12_g34011_MAGBIO' => 'mbi', 'MBI14_g04655_MAGBIO' => 'mbi', 'MCO07G653' => 'mco', 'MCO10G173' => 'mco', 'MD01G1087100' => 'mdo', 'MD01G1104200' => 'mdo', 'MD02G1205100' => 'mdo', 'MD04G1079200' => 'mdo', 'MD04G1131400' => 'mdo', 'MD07G1121600' => 'mdo', 'MD07G1157300' => 'mdo', 'MD07G1171000' => 'mdo', 'MD12G1144500' => 'mdo', 'Medtr1g094610' => 'mtr', 'Medtr4g021795' => 'mtr', 'Medtr4g023760' => 'mtr', 'Medtr7g118050' => 'mtr', 'MELO3C005582.2' => 'cme', 'MELO3C005989.2' => 'cme', 'MELO3C006192.2' => 'cme', 'MELO3C009248.2' => 'cme', 'MELO3C019817.2' => 'cme', 'Migut.B01625' => 'egut', 'Migut.B01915' => 'egut', 'Migut.F01721' => 'egut', 'Migut.J00314' => 'egut', 'MSTRG.20742' => 'ama', 'MSTRG.8134' => 'ama', 'Nitab4.5_0000096g0010' => 'nta', 'Nitab4.5_0000202g0030' => 'nta', 'Nitab4.5_0000216g0370' => 'nta', 'Nitab4.5_0000457g0230' => 'nta', 'Nitab4.5_0001702g0170' => 'nta', 'Nitab4.5_0003607g0010' => 'nta', 'Nitab4.5_0004917g0020' => 'nta', 'Nitab4.5_0007059g0010' => 'nta', 'Nitab4.5_0007184g0010' => 'nta', 'Nitab4.5_0007346g0020' => 'nta', 'Nn1g00410' => 'nnu', 'Nn1g01252' => 'nnu', 'Nn2g11168' => 'nnu', 'Nn2g13403' => 'nnu', 'Nn2g13760' => 'nnu', 'Nn4g26380' => 'nnu', 'Oeu000806.2' => 'oeu', 'Oeu005788.1' => 'oeu', 'Oeu006900.3' => 'oeu', 'Oeu007797.1' => 'oeu', 'Oeu011932.1' => 'oeu', 'Oeu022739.1' => 'oeu', 'Oeu037918.1' => 'oeu', 'Oeu055490.2' => 'oeu', 'Os01g0844400' => 'osa', 'Os02g0819100' => 'osa', 'Os03g0804300' => 'osa', 'Os05g0458000' => 'osa', 'Os07g0467800' => 'osa', 'Os12g0602200' => 'osa', 'Peaxi162Scf00013g03444' => 'pax', 'Peaxi162Scf00094g01120' => 'pax', 'Peaxi162Scf00191g01211' => 'pax', 'Peaxi162Scf00238g01110' => 'pax', 'Peaxi162Scf00330g00719' => 'pax', 'Peaxi162Scf00627g00018' => 'pax', 'PGR031G2686' => 'pgr', 'PGR042G0809' => 'pgr', 'PGR142G0193' => 'pgr', 'PGSC0003DMG400011066' => 'stu', 'PGSC0003DMG400012041' => 'stu', 'PGSC0003DMG400013678' => 'stu', 'PGSC0003DMG400023477' => 'stu', 'PGSC0003DMG400025956' => 'stu', 'PGSC0003DMG401019151' => 'stu', 'Phvul.006G116400' => 'pvu', 'Phvul.007G097300' => 'pvu', 'Phvul.010G015000' => 'pvu', 'Phvul.010G083900' => 'pvu', 'Potri.001G117100' => 'ptr', 'Potri.002G147300' => 'ptr', 'Potri.003G115600' => 'ptr', 'Potri.006G087400' => 'ptr', 'Potri.010G226100' => 'ptr', 'Potri.014G069200' => 'ptr', 'Potri.014G104000' => 'ptr', 'Potri.016G100200' => 'ptr', 'Pp3c10_20450' => 'ppa', 'Pp3c1_42400' => 'ppa', 'Pp3c3_24390' => 'ppa', 'Pp3c3_2860' => 'ppa', 'PRCOL_00003193' => 'pco', 'Prupe.2G144500' => 'ppe', 'Prupe.2G195700' => 'ppe', 'Prupe.2G209800' => 'ppe', 'Prupe.5G080000' => 'ppe', 'Prupe.6G257900' => 'ppe', 'Psat3g001160' => 'psa', 'Psat6g181880' => 'psa', 'Psat7g233720' => 'psa', 'PSO063G7587' => 'pso', 'PSO339G2145' => 'pso', 'PSO339G3369' => 'pso', 'PSO478G2747' => 'pso', 'PSO513G0140' => 'pso', 'PSO782G1614' => 'pso', 'PSO782G4889' => 'pso', 'PSO782G5485' => 'pso', 'PSO801G0241' => 'pso', 'QL07p048854' => 'qlo', 'QL08p046745' => 'qlo', 'QL08p052606' => 'qlo', 'QL08p053414' => 'qlo', 'QL08p054868' => 'qlo', 'RcHm_v2.0_Chr1g0350251' => 'rch', 'RcHm_v2.0_Chr1g0360851' => 'rch', 'RcHm_v2.0_Chr1g0362791' => 'rch', 'RcHm_v2.0_Chr3g0466281' => 'rch', 'RcHm_v2.0_Chr7g0201481' => 'rch', 'Rhsim01G0148600' => 'rsi', 'Rhsim05G0194400' => 'rsi', 'Rhsim07G0000700' => 'rsi', 'Rhsim07G0000800' => 'rsi', 'Rhsim07G0027900' => 'rsi', 'Rhsim09G0149500' => 'rsi', 'RhsimUnG0186900' => 'rsi', 'Sabra01G0089900' => 'sbr', 'Sabra02G0114700' => 'sbr', 'Sabra02G0116300' => 'sbr', 'Sabra03G0080100' => 'sbr', 'Sabra08G0024300' => 'sbr', 'Sabra10G0174300' => 'sbr', 'Sabra14G0048900' => 'sbr', 'Sabra14G0076500' => 'sbr', 'SalBow5G2513' => 'sbo', 'Sc01g0002300' => 'sci', 'Sc01g0004450' => 'sci', 'Sc06g0001680' => 'sci', 'Sc23g0003580' => 'sci', 'Sed0000913' => 'sed', 'Sed0001655' => 'sed', 'Sed0007745' => 'sed', 'Sed0010951' => 'sed', 'Sed0017599' => 'sed', 'Sed0021405' => 'sed', 'Sed0022810' => 'sed', 'SEGI_07099' => 'sgi', 'SEGI_11931' => 'sgi', 'SEGI_13187' => 'sgi', 'SEGI_29958' => 'sgi', 'SEGI_36351' => 'sgi', 'SGA_v2.0_scaffold126G33770' => 'sas', 'SGA_v2.0_scaffold153G37003' => 'sas', 'SGA_v2.0_scaffold2G01359' => 'sas', 'SGA_v2.0_scaffold5G03064' => 'sas', 'SGA_v2.0_scaffold95G28903' => 'sas', 'SHI12701' => 'shi', 'SHI26410' => 'shi', 'SHI38997' => 'shi', 'SHI53759' => 'shi', 'SHI53886' => 'shi', 'SHI54714' => 'shi', 'SMO011G0041' => 'smo', 'SMO146G0251' => 'smo', 'SMO160G0004' => 'smo', 'SMO174G0057' => 'smo', 'SMO244G0089' => 'smo', 'SMO296G0011' => 'smo', 'Solyc01g091280.3' => 'sly', 'Solyc05g047610.3' => 'sly', 'Solyc05g047640.3' => 'sly', 'Solyc05g055630.3' => 'sly', 'Solyc10g018160.2' => 'sly', 'Solyc10g084820.2' => 'sly', 'Solyc10g086565.2' => 'sly', 'Sopen01g037030' => 'spe', 'Sopen05g027920' => 'spe', 'Sopen05g034070' => 'spe', 'Sopen10g007260' => 'spe', 'Sopen10g034260' => 'spe', 'Sopen10g035950' => 'spe', 'Sp3g07710' => 'spa', 'Sp4g27420' => 'spa', 'Sp5g02450' => 'spa', 'Sp6g01280' => 'spa', 'Sp6g38480' => 'spa', 'Sp7g20780' => 'spa', 'TAR374G1413' => 'tar', 'TAR623G1777' => 'tar', 'TAR629G2370' => 'tar', 'TAR633G1759' => 'tar', 'TAR636G3387' => 'tar', 'THA.LOC104802447' => 'tha', 'THA.LOC104813916' => 'tha', 'THA.LOC104816423' => 'tha', 'THA.LOC104817246' => 'tha', 'THA.LOC104825895' => 'tha', 'Thecc.01G335200' => 'tca', 'Thecc.01G377400' => 'tca', 'Thecc.03G262200' => 'tca', 'Thecc.05G036800' => 'tca', 'Thecc.10G080500' => 'tca', 'Thecc.10G080800' => 'tca', 'Thhalv10001560m.g' => 'esa', 'Thhalv10006120m.g' => 'esa', 'Thhalv10014375m.g' => 'esa', 'Thhalv10021264m.g' => 'esa', 'Thhalv10028856m.g' => 'esa', 'TPR.G1914' => 'tpr', 'TPR.G4757' => 'tpr', 'TPR.G5595' => 'tpr', 'TWI14G0952' => 'twi', 'TWI14G1307' => 'twi', 'TWI38G2143' => 'twi', 'TWI59G0826' => 'twi', 'TWI77G0527' => 'twi', 'TWI81G0150' => 'twi', 'unitig_21.g21018' => 'ugi', 'unitig_26.g9725' => 'ugi', 'unitig_744.g24653' => 'ugi', 'unitig_749.g13778' => 'ugi', 'unitig_899.g15035' => 'ugi', 'vmacro04296' => 'vma', 'vmacro04852' => 'vma', 'vmacro13404' => 'vma', 'vmacro20169' => 'vma', 'vmacro21014' => 'vma', 'VMungo0331G0237' => 'vmu', 'VMungo0331G0706' => 'vmu', 'VMungo0331G1361' => 'vmu', 'VMungo0331G1489' => 'vmu', 'VMungo0540G1037' => 'vmu', 'VMungo0720G2487' => 'vmu', 'VMungo0720G2721' => 'vmu', 'Zm00001eb086860' => 'zma', 'Zm00001eb104760' => 'zma', 'Zm00001eb148220' => 'zma', 'Zm00001eb259030' => 'zma', 'Zm00001eb289590' => 'zma', 'Zm00001eb420150' => 'zma' ) $gf_id = 'HOM05D000968' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000968' ) $data_identifier = 'HOM05D000968' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 19, 'bol' => (int) 9, 'bra' => (int) 12, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 5, 'ccan' => (int) 7, 'cde' => (int) 5, 'cfa' => (int) 8, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 4, 'dca' => (int) 5, 'din' => (int) 5, 'dzi' => (int) 12, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 25, 'fve' => (int) 5, 'gma' => (int) 9, 'ghi' => (int) 18, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 7, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 5, 'sun' => (int) 2, 'lal' => (int) 9, 'lja' => (int) 5, 'lonja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 9, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 2, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 3, 'stu' => (int) 6, 'pvu' => (int) 4, 'ptr' => (int) 8, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 3, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 1, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 5, 'sas' => (int) 5, 'shi' => (int) 6, 'smo' => (int) 6, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 3, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420150' $species_info = array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ) $local_species = 'han' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000968', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p31690' => 'bna', 'A03p36040' => 'bna', 'A03p53730' => 'bna', 'A04p01410' => 'bna', 'A05p05420' => 'bna', 'A05p39630' => 'bna', 'A05p39640' => 'bna', 'A09p00970' => 'bna', 'A09p53060' => 'bna', 'A10p31890' => 'bna', 'Aa31LG10G15040' => 'aar', 'Aa31LG1G21090' => 'aar', 'Aa31LG1G26900' => 'aar', 'Aa31LG3G1820' => 'aar', 'Aa31LG5G1100' => 'aar', 'Aa31LG6G4740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2265' => 'aag', 'Actinidia07998' => 'ach', 'Actinidia11266' => 'ach', 'Actinidia12682' => 'ach', 'Actinidia26479' => 'ach', 'Actinidia31406' => 'ach', 'Actinidia32437' => 'ach', 'Actinidia38862' => 'ach', 'Ah.05g174230' => 'amhyb', 'Ah.05g179070' => 'amhyb', 'Ah.05g179090' => 'amhyb', 'Ah.12g059950' => 'amhyb', 'AL3G20480' => 'aly', 'AL4G44520' => 'aly', 'AL5G43110' => 'aly', 'AL6G13890' => 'aly', 'AL6G52620' => 'aly', 'AL7G30830' => 'aly', 'Aqoxy1G00899' => 'aox', 'Aqoxy5G04333' => 'aox', 'Aqoxy7G00641' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3IZ0NN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4EF6AW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W9P8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79GA3M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C43NQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFCU6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G95YVJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCHK29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LU1UG8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX91RN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGB4B1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8DA0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9H7JI' => 'arhy', 'AT3G09320' => 'ath', 'AT3G60800' => 'ath', 'AT4G00840' => 'ath', 'AT4G22750' => 'ath', 'AT5G04270' => 'ath', 'ATR0090G003' => 'atr', 'ATR0559G349' => 'atr', 'ATR0680G261' => 'atr', 'ATR0810G048' => 'atr', 'Atru.chr12.831' => 'acertr', 'Atru.chr5.303' => 'acertr', 'Atru.chr5.748' => 'acertr', 'Atru.chr8.1999' => 'acertr', 'Atru.chr9.1436' => 'acertr', 'AUR62004211' => 'cqu', 'AUR62004548' => 'cqu', 'AUR62013637' => 'cqu', 'AUR62022662' => 'cqu', 'AUR62025777' => 'cqu', 'AUR62042386' => 'cqu', 'BcaB01g02310' => 'bca', 'BcaB01g06062' => 'bca', 'BcaB02g08975' => 'bca', 'BcaB02g08980' => 'bca', 'BcaC01g04228' => 'bca', 'BcaC01g06830' => 'bca', 'BcaC02g10186' => 'bca', 'BcaC02g12214' => 'bca', 'BcaC04g24101' => 'bca', 'BcaC05g29520' => 'bca', 'BcaC05g29661' => 'bca', 'BcaC06g32130' => 'bca', 'BcaC06g32131' => 'bca', 'BcaC07g40601' => 'bca', 'BcaC07g42641' => 'bca', 'BcaNung01038' => 'bca', 'BcaNung01676' => 'bca', 'BcaNung02480' => 'bca', 'BcaNung07376' => 'bca', 'BolC3t16146H' => 'bol', 'BolC3t16637H' => 'bol', 'BolC4t22257H' => 'bol', 'BolC4t24728H' => 'bol', 'BolC5t34517H' => 'bol', 'BolC7t45703H' => 'bol', 'BolC8t51166H' => 'bol', 'BolC9t53038H' => 'bol', 'BolC9t60000H' => 'bol', 'BraA01t01345Z' => 'bra', 'BraA01t01346Z' => 'bra', 'BraA01t01348Z' => 'bra', 'BraA03t12347Z' => 'bra', 'BraA03t12775Z' => 'bra', 'BraA03t14439Z' => 'bra', 'BraA04t15860Z' => 'bra', 'BraA05t19511Z' => 'bra', 'BraA05t22746Z' => 'bra', 'BraA09t35767Z' => 'bra', 'BraA09t40732Z' => 'bra', 'BraA10t45233Z' => 'bra', 'C03p38720' => 'bna', 'C03p43680' => 'bna', 'C04p06350' => 'bna', 'C04p31800' => 'bna', 'C05p58680' => 'bna', 'C07p52110' => 'bna', 'C08p35760' => 'bna', 'C09p01050' => 'bna', 'C09p72600' => 'bna', 'CAN.G106.2' => 'can', 'CAN.G1482.1' => 'can', 'CAN.G324.12' => 'can', 'CAN.G388.20' => 'can', 'CAN.G412.7' => 'can', 'CAN.G694.32' => 'can', 'CAN.G92.12' => 'can', 'CANSAT11G2353' => 'cansat', 'CANSAT21G1398' => 'cansat', 'CANSAT56G2456' => 'cansat', 'CANSAT56G3031' => 'cansat', 'CANSAT56G4539' => 'cansat', 'CARHR083680' => 'chi', 'CARHR171190' => 'chi', 'CARHR209010' => 'chi', 'CARHR229680' => 'chi', 'CARHR249490' => 'chi', 'Carub.0003s0844' => 'cru', 'Carub.0005s2755' => 'cru', 'Carub.0006s0322' => 'cru', 'Carub.0006s3586' => 'cru', 'Carub.0007s1855' => 'cru', 'Ca_07808_v3' => 'car', 'Ca_09535_v3' => 'car', 'Ca_10548_v3' => 'car', 'Ca_19913_v3' => 'car', 'Ca_19916_v3' => 'car', 'Ca_19975_v3' => 'car', 'CBR_g22876' => 'cbr', 'CBR_g22879' => 'cbr', 'CBR_g38491' => 'cbr', 'CBR_g54185' => 'cbr', 'CBR_g54190' => 'cbr', 'Cc02_g11020' => 'ccan', 'Cc02_g23920' => 'ccan', 'Cc02_g39860' => 'ccan', 'Cc02_g39870' => 'ccan', 'Cc03_g06760' => 'ccan', 'Cc06_g02450' => 'ccan', 'Cc09_g09450' => 'ccan', 'CDE02G1959' => 'cde', 'CDE04G0600' => 'cde', 'CDE07G1996' => 'cde', 'CDE07G2078' => 'cde', 'CDE11G0611' => 'cde', 'Cfa001683' => 'cfa', 'Cfa001734' => 'cfa', 'Cfa001737' => 'cfa', 'Cfa003751' => 'cfa', 'Cfa012019' => 'cfa', 'Cfa017353' => 'cfa', 'Cfa017732' => 'cfa', 'Cfa022464' => 'cfa', 'Ciclev10012400m.g' => 'ccl', 'Ciclev10021242m.g' => 'ccl', 'Ciclev10021302m.g' => 'ccl', 'Ciclev10021463m.g' => 'ccl', 'Ciclev10032359m.g' => 'ccl', 'CiPaw.01G081000' => 'cil', 'CiPaw.01G262500' => 'cil', 'CiPaw.01G269800' => 'cil', 'CiPaw.02G168400' => 'cil', 'CiPaw.05G119500' => 'cil', 'CiPaw.11G147300' => 'cil', 'ClCG01G003630' => 'cla', 'ClCG05G000510' => 'cla', 'ClCG05G002300' => 'cla', 'ClCG08G007650' => 'cla', 'ClCG10G021250' => 'cla', 'COL.COLO4_06218' => 'col', 'COL.COLO4_12538' => 'col', 'COL.COLO4_14775' => 'col', 'COL.COLO4_23875' => 'col', 'Cpa.g.sc141.16' => 'cpa', 'Cpa.g.sc169.16' => 'cpa', 'Cpa.g.sc244.4' => 'cpa', 'Cpa.g.sc244.5' => 'cpa', 'Cpa.g.sc29.87' => 'cpa', 'Cpa.g.sc53.115' => 'cpa', 'Cre03.g207502' => 'cre', 'Cre06.g277000' => 'cre', 'Cre09.g394050' => 'cre', 'CsaV3_3G007680' => 'csa', 'CsaV3_3G009710' => 'csa', 'CsaV3_3G034790' => 'csa', 'CsaV3_5G003750' => 'csa', 'CsaV3_6G036620' => 'csa', 'CSS0002288' => 'camsi', 'CSS0011250' => 'camsi', 'CSS0021619' => 'camsi', 'CSS0046701' => 'camsi', 'DCAR_006420' => 'dca', 'DCAR_006865' => 'dca', 'DCAR_008558' => 'dca', 'DCAR_028754' => 'dca', 'DCAR_028755' => 'dca', 'Dinv31218' => 'din', 'Dinv32371' => 'din', 'Dinv34250' => 'din', 'Dinv37156' => 'din', 'Dinv43704' => 'din', 'Duzib093G1811' => 'dzi', 'Duzib106G1622' => 'dzi', 'Duzib114G0504' => 'dzi', 'Duzib128G0338' => 'dzi', 'Duzib128G1577' => 'dzi', 'Duzib133G0104' => 'dzi', 'Duzib133G1080' => 'dzi', 'Duzib138G0324' => 'dzi', 'Duzib138G0394' => 'dzi', 'Duzib205G0122' => 'dzi', 'Duzib268G1020' => 'dzi', 'Duzib268G1359' => 'dzi', 'ECA232G3929' => 'eca', 'ECA236G2210' => 'eca', 'ECA236G2287' => 'eca', 'ECA240G4568' => 'eca', 'ECA247G0894' => 'eca', 'EL10Ac1g00200' => 'bvu', 'EL10Ac1g00886' => 'bvu', 'EL10As1g23091' => 'bvu', 'EL10As1g23092' => 'bvu', 'Eucgr.A01284' => 'egr', 'Eucgr.A01285' => 'egr', 'Eucgr.D02456' => 'egr', 'Eucgr.E00018' => 'egr', 'Eucgr.E01439' => 'egr', 'Eucgr.G02859' => 'egr', 'FAN01G0168' => 'fan', 'FAN01G0453' => 'fan', 'FAN01G2761' => 'fan', 'FAN02G1239' => 'fan', 'FAN03G0645' => 'fan', 'FAN03G2707' => 'fan', 'FAN03G2978' => 'fan', 'FAN04G0227' => 'fan', 'FAN06G0091' => 'fan', 'FAN06G1418' => 'fan', 'FAN06G1512' => 'fan', 'FAN06G1986' => 'fan', 'FAN06G2905' => 'fan', 'FAN06G4325' => 'fan', 'FAN08G0033' => 'fan', 'FAN09G0642' => 'fan', 'FAN10G1763' => 'fan', 'FAN10G2026' => 'fan', 'FAN10G2513' => 'fan', 'FAN10G3402' => 'fan', 'FAN10G3564' => 'fan', 'FAN10G3987' => 'fan', 'FAN13G1490' => 'fan', 'FAN14G5857' => 'fan', 'FAN18G1188' => 'fan', 'FvH4_5g00750' => 'fve', 'FvH4_6g13410' => 'fve', 'FvH4_7g11740' => 'fve', 'FvH4_7g17410' => 'fve', 'FvH4_7g18860' => 'fve', 'Glyma.01G099100' => 'gma', 'Glyma.01G142300' => 'gma', 'Glyma.03G025500' => 'gma', 'Glyma.03G069700' => 'gma', 'Glyma.03G260000' => 'gma', 'Glyma.09G269800' => 'gma', 'Glyma.10G208700' => 'gma', 'Glyma.18G220400' => 'gma', 'Glyma.20G182000' => 'gma', 'Gohir.A01G221726' => 'ghi', 'Gohir.A07G134600' => 'ghi', 'Gohir.A07G146000' => 'ghi', 'Gohir.A08G173900' => 'ghi', 'Gohir.A09G194900' => 'ghi', 'Gohir.A10G204100' => 'ghi', 'Gohir.A11G080600' => 'ghi', 'Gohir.A11G327500' => 'ghi', 'Gohir.A12G101800' => 'ghi', 'Gohir.D01G211200' => 'ghi', 'Gohir.D07G139200' => 'ghi', 'Gohir.D07G152100' => 'ghi', 'Gohir.D08G192600' => 'ghi', 'Gohir.D09G189200' => 'ghi', 'Gohir.D10G212000' => 'ghi', 'Gohir.D11G085200' => 'ghi', 'Gohir.D11G346400' => 'ghi', 'Gohir.D12G104800' => 'ghi', 'Gorai.001G151300' => 'gra', 'Gorai.001G174100' => 'gra', 'Gorai.002G257000' => 'gra', 'Gorai.004G202600' => 'gra', 'Gorai.007G090900' => 'gra', 'Gorai.007G376700' => 'gra', 'Gorai.008G114100' => 'gra', 'Gorai.011G237900' => 'gra', 'GSVIVG01005450001' => 'vvi', 'GSVIVG01016232001' => 'vvi', 'GSVIVG01026157001' => 'vvi', 'GSVIVG01027419001' => 'vvi', 'GSVIVG01027631001' => 'vvi', 'GSVIVG01034143001' => 'vvi', 'HanXRQChr03g0093921' => 'han', 'HanXRQChr04g0120001' => 'han', 'HanXRQChr04g0122561' => 'han', 'HanXRQChr09g0246851' => 'han', 'HanXRQChr10g0293311' => 'han', 'HanXRQChr13g0425231' => 'han', 'HanXRQChr16g0532571' => 'han', 'Haze_09050' => 'cav', 'Haze_15715' => 'cav', 'Haze_15716' => 'cav', 'Haze_16803' => 'cav', 'Haze_16850' => 'cav', 'Hma1.2p1_0301F.1_g118655' => 'hma', 'Hma1.2p1_0309F.1_g120590' => 'hma', 'Hma1.2p1_0936F.1_g238900' => 'hma', 'Hma1.2p1_3552F.1_g336740' => 'hma', 'HPP92_003520' => 'vpl', 'HPP92_006628' => 'vpl', 'HPP92_006645' => 'vpl', 'HPP92_014669' => 'vpl', 'HPP92_015077' => 'vpl', 'Hund16742' => 'sun', 'Hund17022' => 'sun', 'Lalb_Chr02g0152131' => 'lal', 'Lalb_Chr05g0225371' => 'lal', 'Lalb_Chr07g0189841' => 'lal', 'Lalb_Chr07g0192961' => 'lal', 'Lalb_Chr12g0208221' => 'lal', 'Lalb_Chr13g0291211' => 'lal', 'Lalb_Chr13g0291781' => 'lal', 'Lalb_Chr18g0044651' => 'lal', 'Lalb_Chr21g0313731' => 'lal', 'Lj1g0022533' => 'lja', 'Lj2A18T50' => 'lonja', 'Lj2A92G93' => 'lonja', 'Lj3A965T73' => 'lonja', 'Lj3g0000673' => 'lja', 'Lj3g0002666' => 'lja', 'Lj4g0016985' => 'lja', 'Lj5g0003625' => 'lja', 'Lj7A529G36' => 'lonja', 'Lj9A569T49' => 'lonja', 'Lj9A604T63' => 'lonja', 'Lsat_1_v5_gn_3_132060' => 'lsa', 'Lsat_1_v5_gn_4_68941' => 'lsa', 'Lsat_1_v5_gn_5_95580' => 'lsa', 'Lsat_1_v5_gn_7_161' => 'lsa', 'Lsat_1_v5_gn_7_7041' => 'lsa', 'Lsat_1_v5_gn_9_33481' => 'lsa', 'Lsat_1_v5_gn_9_68260' => 'lsa', 'Manes.01G073100' => 'mes', 'Manes.01G266300' => 'mes', 'Manes.02G033300' => 'mes', 'Manes.05G017900' => 'mes', 'Manes.05G046100' => 'mes', 'Manes.08G080900' => 'mes', 'Manes.10G049400' => 'mes', 'Mapoly0009s0186' => 'mpo', 'Mapoly0036s0118' => 'mpo', 'Mapoly0101s0046' => 'mpo', 'MBI04_g30218_MAGBIO' => 'mbi', 'MBI04_g35564_MAGBIO' => 'mbi', 'MBI12_g34011_MAGBIO' => 'mbi', 'MBI14_g04655_MAGBIO' => 'mbi', 'MCO07G653' => 'mco', 'MCO10G173' => 'mco', 'MD01G1087100' => 'mdo', 'MD01G1104200' => 'mdo', 'MD02G1205100' => 'mdo', 'MD04G1079200' => 'mdo', 'MD04G1131400' => 'mdo', 'MD07G1121600' => 'mdo', 'MD07G1157300' => 'mdo', 'MD07G1171000' => 'mdo', 'MD12G1144500' => 'mdo', 'Medtr1g094610' => 'mtr', 'Medtr4g021795' => 'mtr', 'Medtr4g023760' => 'mtr', 'Medtr7g118050' => 'mtr', 'MELO3C005582.2' => 'cme', 'MELO3C005989.2' => 'cme', 'MELO3C006192.2' => 'cme', 'MELO3C009248.2' => 'cme', 'MELO3C019817.2' => 'cme', 'Migut.B01625' => 'egut', 'Migut.B01915' => 'egut', 'Migut.F01721' => 'egut', 'Migut.J00314' => 'egut', 'MSTRG.20742' => 'ama', 'MSTRG.8134' => 'ama', 'Nitab4.5_0000096g0010' => 'nta', 'Nitab4.5_0000202g0030' => 'nta', 'Nitab4.5_0000216g0370' => 'nta', 'Nitab4.5_0000457g0230' => 'nta', 'Nitab4.5_0001702g0170' => 'nta', 'Nitab4.5_0003607g0010' => 'nta', 'Nitab4.5_0004917g0020' => 'nta', 'Nitab4.5_0007059g0010' => 'nta', 'Nitab4.5_0007184g0010' => 'nta', 'Nitab4.5_0007346g0020' => 'nta', 'Nn1g00410' => 'nnu', 'Nn1g01252' => 'nnu', 'Nn2g11168' => 'nnu', 'Nn2g13403' => 'nnu', 'Nn2g13760' => 'nnu', 'Nn4g26380' => 'nnu', 'Oeu000806.2' => 'oeu', 'Oeu005788.1' => 'oeu', 'Oeu006900.3' => 'oeu', 'Oeu007797.1' => 'oeu', 'Oeu011932.1' => 'oeu', 'Oeu022739.1' => 'oeu', 'Oeu037918.1' => 'oeu', 'Oeu055490.2' => 'oeu', 'Os01g0844400' => 'osa', 'Os02g0819100' => 'osa', 'Os03g0804300' => 'osa', 'Os05g0458000' => 'osa', 'Os07g0467800' => 'osa', 'Os12g0602200' => 'osa', 'Peaxi162Scf00013g03444' => 'pax', 'Peaxi162Scf00094g01120' => 'pax', 'Peaxi162Scf00191g01211' => 'pax', 'Peaxi162Scf00238g01110' => 'pax', 'Peaxi162Scf00330g00719' => 'pax', 'Peaxi162Scf00627g00018' => 'pax', 'PGR031G2686' => 'pgr', 'PGR042G0809' => 'pgr', 'PGR142G0193' => 'pgr', 'PGSC0003DMG400011066' => 'stu', 'PGSC0003DMG400012041' => 'stu', 'PGSC0003DMG400013678' => 'stu', 'PGSC0003DMG400023477' => 'stu', 'PGSC0003DMG400025956' => 'stu', 'PGSC0003DMG401019151' => 'stu', 'Phvul.006G116400' => 'pvu', 'Phvul.007G097300' => 'pvu', 'Phvul.010G015000' => 'pvu', 'Phvul.010G083900' => 'pvu', 'Potri.001G117100' => 'ptr', 'Potri.002G147300' => 'ptr', 'Potri.003G115600' => 'ptr', 'Potri.006G087400' => 'ptr', 'Potri.010G226100' => 'ptr', 'Potri.014G069200' => 'ptr', 'Potri.014G104000' => 'ptr', 'Potri.016G100200' => 'ptr', 'Pp3c10_20450' => 'ppa', 'Pp3c1_42400' => 'ppa', 'Pp3c3_24390' => 'ppa', 'Pp3c3_2860' => 'ppa', 'PRCOL_00003193' => 'pco', 'Prupe.2G144500' => 'ppe', 'Prupe.2G195700' => 'ppe', 'Prupe.2G209800' => 'ppe', 'Prupe.5G080000' => 'ppe', 'Prupe.6G257900' => 'ppe', 'Psat3g001160' => 'psa', 'Psat6g181880' => 'psa', 'Psat7g233720' => 'psa', 'PSO063G7587' => 'pso', 'PSO339G2145' => 'pso', 'PSO339G3369' => 'pso', 'PSO478G2747' => 'pso', 'PSO513G0140' => 'pso', 'PSO782G1614' => 'pso', 'PSO782G4889' => 'pso', 'PSO782G5485' => 'pso', 'PSO801G0241' => 'pso', 'QL07p048854' => 'qlo', 'QL08p046745' => 'qlo', 'QL08p052606' => 'qlo', 'QL08p053414' => 'qlo', 'QL08p054868' => 'qlo', 'RcHm_v2.0_Chr1g0350251' => 'rch', 'RcHm_v2.0_Chr1g0360851' => 'rch', 'RcHm_v2.0_Chr1g0362791' => 'rch', 'RcHm_v2.0_Chr3g0466281' => 'rch', 'RcHm_v2.0_Chr7g0201481' => 'rch', 'Rhsim01G0148600' => 'rsi', 'Rhsim05G0194400' => 'rsi', 'Rhsim07G0000700' => 'rsi', 'Rhsim07G0000800' => 'rsi', 'Rhsim07G0027900' => 'rsi', 'Rhsim09G0149500' => 'rsi', 'RhsimUnG0186900' => 'rsi', 'Sabra01G0089900' => 'sbr', 'Sabra02G0114700' => 'sbr', 'Sabra02G0116300' => 'sbr', 'Sabra03G0080100' => 'sbr', 'Sabra08G0024300' => 'sbr', 'Sabra10G0174300' => 'sbr', 'Sabra14G0048900' => 'sbr', 'Sabra14G0076500' => 'sbr', 'SalBow5G2513' => 'sbo', 'Sc01g0002300' => 'sci', 'Sc01g0004450' => 'sci', 'Sc06g0001680' => 'sci', 'Sc23g0003580' => 'sci', 'Sed0000913' => 'sed', 'Sed0001655' => 'sed', 'Sed0007745' => 'sed', 'Sed0010951' => 'sed', 'Sed0017599' => 'sed', 'Sed0021405' => 'sed', 'Sed0022810' => 'sed', 'SEGI_07099' => 'sgi', 'SEGI_11931' => 'sgi', 'SEGI_13187' => 'sgi', 'SEGI_29958' => 'sgi', 'SEGI_36351' => 'sgi', 'SGA_v2.0_scaffold126G33770' => 'sas', 'SGA_v2.0_scaffold153G37003' => 'sas', 'SGA_v2.0_scaffold2G01359' => 'sas', 'SGA_v2.0_scaffold5G03064' => 'sas', 'SGA_v2.0_scaffold95G28903' => 'sas', 'SHI12701' => 'shi', 'SHI26410' => 'shi', 'SHI38997' => 'shi', 'SHI53759' => 'shi', 'SHI53886' => 'shi', 'SHI54714' => 'shi', 'SMO011G0041' => 'smo', 'SMO146G0251' => 'smo', 'SMO160G0004' => 'smo', 'SMO174G0057' => 'smo', 'SMO244G0089' => 'smo', 'SMO296G0011' => 'smo', 'Solyc01g091280.3' => 'sly', 'Solyc05g047610.3' => 'sly', 'Solyc05g047640.3' => 'sly', 'Solyc05g055630.3' => 'sly', 'Solyc10g018160.2' => 'sly', 'Solyc10g084820.2' => 'sly', 'Solyc10g086565.2' => 'sly', 'Sopen01g037030' => 'spe', 'Sopen05g027920' => 'spe', 'Sopen05g034070' => 'spe', 'Sopen10g007260' => 'spe', 'Sopen10g034260' => 'spe', 'Sopen10g035950' => 'spe', 'Sp3g07710' => 'spa', 'Sp4g27420' => 'spa', 'Sp5g02450' => 'spa', 'Sp6g01280' => 'spa', 'Sp6g38480' => 'spa', 'Sp7g20780' => 'spa', 'TAR374G1413' => 'tar', 'TAR623G1777' => 'tar', 'TAR629G2370' => 'tar', 'TAR633G1759' => 'tar', 'TAR636G3387' => 'tar', 'THA.LOC104802447' => 'tha', 'THA.LOC104813916' => 'tha', 'THA.LOC104816423' => 'tha', 'THA.LOC104817246' => 'tha', 'THA.LOC104825895' => 'tha', 'Thecc.01G335200' => 'tca', 'Thecc.01G377400' => 'tca', 'Thecc.03G262200' => 'tca', 'Thecc.05G036800' => 'tca', 'Thecc.10G080500' => 'tca', 'Thecc.10G080800' => 'tca', 'Thhalv10001560m.g' => 'esa', 'Thhalv10006120m.g' => 'esa', 'Thhalv10014375m.g' => 'esa', 'Thhalv10021264m.g' => 'esa', 'Thhalv10028856m.g' => 'esa', 'TPR.G1914' => 'tpr', 'TPR.G4757' => 'tpr', 'TPR.G5595' => 'tpr', 'TWI14G0952' => 'twi', 'TWI14G1307' => 'twi', 'TWI38G2143' => 'twi', 'TWI59G0826' => 'twi', 'TWI77G0527' => 'twi', 'TWI81G0150' => 'twi', 'unitig_21.g21018' => 'ugi', 'unitig_26.g9725' => 'ugi', 'unitig_744.g24653' => 'ugi', 'unitig_749.g13778' => 'ugi', 'unitig_899.g15035' => 'ugi', 'vmacro04296' => 'vma', 'vmacro04852' => 'vma', 'vmacro13404' => 'vma', 'vmacro20169' => 'vma', 'vmacro21014' => 'vma', 'VMungo0331G0237' => 'vmu', 'VMungo0331G0706' => 'vmu', 'VMungo0331G1361' => 'vmu', 'VMungo0331G1489' => 'vmu', 'VMungo0540G1037' => 'vmu', 'VMungo0720G2487' => 'vmu', 'VMungo0720G2721' => 'vmu', 'Zm00001eb086860' => 'zma', 'Zm00001eb104760' => 'zma', 'Zm00001eb148220' => 'zma', 'Zm00001eb259030' => 'zma', 'Zm00001eb289590' => 'zma', 'Zm00001eb420150' => 'zma' ), 'gf_id' => 'HOM05D000968', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000968' ), 'data_identifier' => 'HOM05D000968', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000968', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p31690' => 'bna', 'A03p36040' => 'bna', 'A03p53730' => 'bna', 'A04p01410' => 'bna', 'A05p05420' => 'bna', 'A05p39630' => 'bna', 'A05p39640' => 'bna', 'A09p00970' => 'bna', 'A09p53060' => 'bna', 'A10p31890' => 'bna', 'Aa31LG10G15040' => 'aar', 'Aa31LG1G21090' => 'aar', 'Aa31LG1G26900' => 'aar', 'Aa31LG3G1820' => 'aar', 'Aa31LG5G1100' => 'aar', 'Aa31LG6G4740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2265' => 'aag', 'Actinidia07998' => 'ach', 'Actinidia11266' => 'ach', 'Actinidia12682' => 'ach', 'Actinidia26479' => 'ach', 'Actinidia31406' => 'ach', 'Actinidia32437' => 'ach', 'Actinidia38862' => 'ach', 'Ah.05g174230' => 'amhyb', 'Ah.05g179070' => 'amhyb', 'Ah.05g179090' => 'amhyb', 'Ah.12g059950' => 'amhyb', 'AL3G20480' => 'aly', 'AL4G44520' => 'aly', 'AL5G43110' => 'aly', 'AL6G13890' => 'aly', 'AL6G52620' => 'aly', 'AL7G30830' => 'aly', 'Aqoxy1G00899' => 'aox', 'Aqoxy5G04333' => 'aox', 'Aqoxy7G00641' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3IZ0NN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4EF6AW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W9P8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79GA3M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C43NQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFCU6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G95YVJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCHK29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LU1UG8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX91RN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGB4B1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8DA0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9H7JI' => 'arhy', 'AT3G09320' => 'ath', 'AT3G60800' => 'ath', 'AT4G00840' => 'ath', 'AT4G22750' => 'ath', 'AT5G04270' => 'ath', 'ATR0090G003' => 'atr', 'ATR0559G349' => 'atr', 'ATR0680G261' => 'atr', 'ATR0810G048' => 'atr', 'Atru.chr12.831' => 'acertr', 'Atru.chr5.303' => 'acertr', 'Atru.chr5.748' => 'acertr', 'Atru.chr8.1999' => 'acertr', 'Atru.chr9.1436' => 'acertr', 'AUR62004211' => 'cqu', 'AUR62004548' => 'cqu', 'AUR62013637' => 'cqu', 'AUR62022662' => 'cqu', 'AUR62025777' => 'cqu', 'AUR62042386' => 'cqu', 'BcaB01g02310' => 'bca', 'BcaB01g06062' => 'bca', 'BcaB02g08975' => 'bca', 'BcaB02g08980' => 'bca', 'BcaC01g04228' => 'bca', 'BcaC01g06830' => 'bca', 'BcaC02g10186' => 'bca', 'BcaC02g12214' => 'bca', 'BcaC04g24101' => 'bca', 'BcaC05g29520' => 'bca', 'BcaC05g29661' => 'bca', 'BcaC06g32130' => 'bca', 'BcaC06g32131' => 'bca', 'BcaC07g40601' => 'bca', 'BcaC07g42641' => 'bca', 'BcaNung01038' => 'bca', 'BcaNung01676' => 'bca', 'BcaNung02480' => 'bca', 'BcaNung07376' => 'bca', 'BolC3t16146H' => 'bol', 'BolC3t16637H' => 'bol', 'BolC4t22257H' => 'bol', 'BolC4t24728H' => 'bol', 'BolC5t34517H' => 'bol', 'BolC7t45703H' => 'bol', 'BolC8t51166H' => 'bol', 'BolC9t53038H' => 'bol', 'BolC9t60000H' => 'bol', 'BraA01t01345Z' => 'bra', 'BraA01t01346Z' => 'bra', 'BraA01t01348Z' => 'bra', 'BraA03t12347Z' => 'bra', 'BraA03t12775Z' => 'bra', 'BraA03t14439Z' => 'bra', 'BraA04t15860Z' => 'bra', 'BraA05t19511Z' => 'bra', 'BraA05t22746Z' => 'bra', 'BraA09t35767Z' => 'bra', 'BraA09t40732Z' => 'bra', 'BraA10t45233Z' => 'bra', 'C03p38720' => 'bna', 'C03p43680' => 'bna', 'C04p06350' => 'bna', 'C04p31800' => 'bna', 'C05p58680' => 'bna', 'C07p52110' => 'bna', 'C08p35760' => 'bna', 'C09p01050' => 'bna', 'C09p72600' => 'bna', 'CAN.G106.2' => 'can', 'CAN.G1482.1' => 'can', 'CAN.G324.12' => 'can', 'CAN.G388.20' => 'can', 'CAN.G412.7' => 'can', 'CAN.G694.32' => 'can', 'CAN.G92.12' => 'can', 'CANSAT11G2353' => 'cansat', 'CANSAT21G1398' => 'cansat', 'CANSAT56G2456' => 'cansat', 'CANSAT56G3031' => 'cansat', 'CANSAT56G4539' => 'cansat', 'CARHR083680' => 'chi', 'CARHR171190' => 'chi', 'CARHR209010' => 'chi', 'CARHR229680' => 'chi', 'CARHR249490' => 'chi', 'Carub.0003s0844' => 'cru', 'Carub.0005s2755' => 'cru', 'Carub.0006s0322' => 'cru', 'Carub.0006s3586' => 'cru', 'Carub.0007s1855' => 'cru', 'Ca_07808_v3' => 'car', 'Ca_09535_v3' => 'car', 'Ca_10548_v3' => 'car', 'Ca_19913_v3' => 'car', 'Ca_19916_v3' => 'car', 'Ca_19975_v3' => 'car', 'CBR_g22876' => 'cbr', 'CBR_g22879' => 'cbr', 'CBR_g38491' => 'cbr', 'CBR_g54185' => 'cbr', 'CBR_g54190' => 'cbr', 'Cc02_g11020' => 'ccan', 'Cc02_g23920' => 'ccan', 'Cc02_g39860' => 'ccan', 'Cc02_g39870' => 'ccan', 'Cc03_g06760' => 'ccan', 'Cc06_g02450' => 'ccan', 'Cc09_g09450' => 'ccan', 'CDE02G1959' => 'cde', 'CDE04G0600' => 'cde', 'CDE07G1996' => 'cde', 'CDE07G2078' => 'cde', 'CDE11G0611' => 'cde', 'Cfa001683' => 'cfa', 'Cfa001734' => 'cfa', 'Cfa001737' => 'cfa', 'Cfa003751' => 'cfa', 'Cfa012019' => 'cfa', 'Cfa017353' => 'cfa', 'Cfa017732' => 'cfa', 'Cfa022464' => 'cfa', 'Ciclev10012400m.g' => 'ccl', 'Ciclev10021242m.g' => 'ccl', 'Ciclev10021302m.g' => 'ccl', 'Ciclev10021463m.g' => 'ccl', 'Ciclev10032359m.g' => 'ccl', 'CiPaw.01G081000' => 'cil', 'CiPaw.01G262500' => 'cil', 'CiPaw.01G269800' => 'cil', 'CiPaw.02G168400' => 'cil', 'CiPaw.05G119500' => 'cil', 'CiPaw.11G147300' => 'cil', 'ClCG01G003630' => 'cla', 'ClCG05G000510' => 'cla', 'ClCG05G002300' => 'cla', 'ClCG08G007650' => 'cla', 'ClCG10G021250' => 'cla', 'COL.COLO4_06218' => 'col', 'COL.COLO4_12538' => 'col', 'COL.COLO4_14775' => 'col', 'COL.COLO4_23875' => 'col', 'Cpa.g.sc141.16' => 'cpa', 'Cpa.g.sc169.16' => 'cpa', 'Cpa.g.sc244.4' => 'cpa', 'Cpa.g.sc244.5' => 'cpa', 'Cpa.g.sc29.87' => 'cpa', 'Cpa.g.sc53.115' => 'cpa', 'Cre03.g207502' => 'cre', 'Cre06.g277000' => 'cre', 'Cre09.g394050' => 'cre', 'CsaV3_3G007680' => 'csa', 'CsaV3_3G009710' => 'csa', 'CsaV3_3G034790' => 'csa', 'CsaV3_5G003750' => 'csa', 'CsaV3_6G036620' => 'csa', 'CSS0002288' => 'camsi', 'CSS0011250' => 'camsi', 'CSS0021619' => 'camsi', 'CSS0046701' => 'camsi', 'DCAR_006420' => 'dca', 'DCAR_006865' => 'dca', 'DCAR_008558' => 'dca', 'DCAR_028754' => 'dca', 'DCAR_028755' => 'dca', 'Dinv31218' => 'din', 'Dinv32371' => 'din', 'Dinv34250' => 'din', 'Dinv37156' => 'din', 'Dinv43704' => 'din', 'Duzib093G1811' => 'dzi', 'Duzib106G1622' => 'dzi', 'Duzib114G0504' => 'dzi', 'Duzib128G0338' => 'dzi', 'Duzib128G1577' => 'dzi', 'Duzib133G0104' => 'dzi', 'Duzib133G1080' => 'dzi', 'Duzib138G0324' => 'dzi', 'Duzib138G0394' => 'dzi', 'Duzib205G0122' => 'dzi', 'Duzib268G1020' => 'dzi', 'Duzib268G1359' => 'dzi', 'ECA232G3929' => 'eca', 'ECA236G2210' => 'eca', 'ECA236G2287' => 'eca', 'ECA240G4568' => 'eca', 'ECA247G0894' => 'eca', 'EL10Ac1g00200' => 'bvu', 'EL10Ac1g00886' => 'bvu', 'EL10As1g23091' => 'bvu', 'EL10As1g23092' => 'bvu', 'Eucgr.A01284' => 'egr', 'Eucgr.A01285' => 'egr', 'Eucgr.D02456' => 'egr', 'Eucgr.E00018' => 'egr', 'Eucgr.E01439' => 'egr', 'Eucgr.G02859' => 'egr', 'FAN01G0168' => 'fan', 'FAN01G0453' => 'fan', 'FAN01G2761' => 'fan', 'FAN02G1239' => 'fan', 'FAN03G0645' => 'fan', 'FAN03G2707' => 'fan', 'FAN03G2978' => 'fan', 'FAN04G0227' => 'fan', 'FAN06G0091' => 'fan', 'FAN06G1418' => 'fan', 'FAN06G1512' => 'fan', 'FAN06G1986' => 'fan', 'FAN06G2905' => 'fan', 'FAN06G4325' => 'fan', 'FAN08G0033' => 'fan', 'FAN09G0642' => 'fan', 'FAN10G1763' => 'fan', 'FAN10G2026' => 'fan', 'FAN10G2513' => 'fan', 'FAN10G3402' => 'fan', 'FAN10G3564' => 'fan', 'FAN10G3987' => 'fan', 'FAN13G1490' => 'fan', 'FAN14G5857' => 'fan', 'FAN18G1188' => 'fan', 'FvH4_5g00750' => 'fve', 'FvH4_6g13410' => 'fve', 'FvH4_7g11740' => 'fve', 'FvH4_7g17410' => 'fve', 'FvH4_7g18860' => 'fve', 'Glyma.01G099100' => 'gma', 'Glyma.01G142300' => 'gma', 'Glyma.03G025500' => 'gma', 'Glyma.03G069700' => 'gma', 'Glyma.03G260000' => 'gma', 'Glyma.09G269800' => 'gma', 'Glyma.10G208700' => 'gma', 'Glyma.18G220400' => 'gma', 'Glyma.20G182000' => 'gma', 'Gohir.A01G221726' => 'ghi', 'Gohir.A07G134600' => 'ghi', 'Gohir.A07G146000' => 'ghi', 'Gohir.A08G173900' => 'ghi', 'Gohir.A09G194900' => 'ghi', 'Gohir.A10G204100' => 'ghi', 'Gohir.A11G080600' => 'ghi', 'Gohir.A11G327500' => 'ghi', 'Gohir.A12G101800' => 'ghi', 'Gohir.D01G211200' => 'ghi', 'Gohir.D07G139200' => 'ghi', 'Gohir.D07G152100' => 'ghi', 'Gohir.D08G192600' => 'ghi', 'Gohir.D09G189200' => 'ghi', 'Gohir.D10G212000' => 'ghi', 'Gohir.D11G085200' => 'ghi', 'Gohir.D11G346400' => 'ghi', 'Gohir.D12G104800' => 'ghi', 'Gorai.001G151300' => 'gra', 'Gorai.001G174100' => 'gra', 'Gorai.002G257000' => 'gra', 'Gorai.004G202600' => 'gra', 'Gorai.007G090900' => 'gra', 'Gorai.007G376700' => 'gra', 'Gorai.008G114100' => 'gra', 'Gorai.011G237900' => 'gra', 'GSVIVG01005450001' => 'vvi', 'GSVIVG01016232001' => 'vvi', 'GSVIVG01026157001' => 'vvi', 'GSVIVG01027419001' => 'vvi', 'GSVIVG01027631001' => 'vvi', 'GSVIVG01034143001' => 'vvi', 'HanXRQChr03g0093921' => 'han', 'HanXRQChr04g0120001' => 'han', 'HanXRQChr04g0122561' => 'han', 'HanXRQChr09g0246851' => 'han', 'HanXRQChr10g0293311' => 'han', 'HanXRQChr13g0425231' => 'han', 'HanXRQChr16g0532571' => 'han', 'Haze_09050' => 'cav', 'Haze_15715' => 'cav', 'Haze_15716' => 'cav', 'Haze_16803' => 'cav', 'Haze_16850' => 'cav', 'Hma1.2p1_0301F.1_g118655' => 'hma', 'Hma1.2p1_0309F.1_g120590' => 'hma', 'Hma1.2p1_0936F.1_g238900' => 'hma', 'Hma1.2p1_3552F.1_g336740' => 'hma', 'HPP92_003520' => 'vpl', 'HPP92_006628' => 'vpl', 'HPP92_006645' => 'vpl', 'HPP92_014669' => 'vpl', 'HPP92_015077' => 'vpl', 'Hund16742' => 'sun', 'Hund17022' => 'sun', 'Lalb_Chr02g0152131' => 'lal', 'Lalb_Chr05g0225371' => 'lal', 'Lalb_Chr07g0189841' => 'lal', 'Lalb_Chr07g0192961' => 'lal', 'Lalb_Chr12g0208221' => 'lal', 'Lalb_Chr13g0291211' => 'lal', 'Lalb_Chr13g0291781' => 'lal', 'Lalb_Chr18g0044651' => 'lal', 'Lalb_Chr21g0313731' => 'lal', 'Lj1g0022533' => 'lja', 'Lj2A18T50' => 'lonja', 'Lj2A92G93' => 'lonja', 'Lj3A965T73' => 'lonja', 'Lj3g0000673' => 'lja', 'Lj3g0002666' => 'lja', 'Lj4g0016985' => 'lja', 'Lj5g0003625' => 'lja', 'Lj7A529G36' => 'lonja', 'Lj9A569T49' => 'lonja', 'Lj9A604T63' => 'lonja', 'Lsat_1_v5_gn_3_132060' => 'lsa', 'Lsat_1_v5_gn_4_68941' => 'lsa', 'Lsat_1_v5_gn_5_95580' => 'lsa', 'Lsat_1_v5_gn_7_161' => 'lsa', 'Lsat_1_v5_gn_7_7041' => 'lsa', 'Lsat_1_v5_gn_9_33481' => 'lsa', 'Lsat_1_v5_gn_9_68260' => 'lsa', 'Manes.01G073100' => 'mes', 'Manes.01G266300' => 'mes', 'Manes.02G033300' => 'mes', 'Manes.05G017900' => 'mes', 'Manes.05G046100' => 'mes', 'Manes.08G080900' => 'mes', 'Manes.10G049400' => 'mes', 'Mapoly0009s0186' => 'mpo', 'Mapoly0036s0118' => 'mpo', 'Mapoly0101s0046' => 'mpo', 'MBI04_g30218_MAGBIO' => 'mbi', 'MBI04_g35564_MAGBIO' => 'mbi', 'MBI12_g34011_MAGBIO' => 'mbi', 'MBI14_g04655_MAGBIO' => 'mbi', 'MCO07G653' => 'mco', 'MCO10G173' => 'mco', 'MD01G1087100' => 'mdo', 'MD01G1104200' => 'mdo', 'MD02G1205100' => 'mdo', 'MD04G1079200' => 'mdo', 'MD04G1131400' => 'mdo', 'MD07G1121600' => 'mdo', 'MD07G1157300' => 'mdo', 'MD07G1171000' => 'mdo', 'MD12G1144500' => 'mdo', 'Medtr1g094610' => 'mtr', 'Medtr4g021795' => 'mtr', 'Medtr4g023760' => 'mtr', 'Medtr7g118050' => 'mtr', 'MELO3C005582.2' => 'cme', 'MELO3C005989.2' => 'cme', 'MELO3C006192.2' => 'cme', 'MELO3C009248.2' => 'cme', 'MELO3C019817.2' => 'cme', 'Migut.B01625' => 'egut', 'Migut.B01915' => 'egut', 'Migut.F01721' => 'egut', 'Migut.J00314' => 'egut', 'MSTRG.20742' => 'ama', 'MSTRG.8134' => 'ama', 'Nitab4.5_0000096g0010' => 'nta', 'Nitab4.5_0000202g0030' => 'nta', 'Nitab4.5_0000216g0370' => 'nta', 'Nitab4.5_0000457g0230' => 'nta', 'Nitab4.5_0001702g0170' => 'nta', 'Nitab4.5_0003607g0010' => 'nta', 'Nitab4.5_0004917g0020' => 'nta', 'Nitab4.5_0007059g0010' => 'nta', 'Nitab4.5_0007184g0010' => 'nta', 'Nitab4.5_0007346g0020' => 'nta', 'Nn1g00410' => 'nnu', 'Nn1g01252' => 'nnu', 'Nn2g11168' => 'nnu', 'Nn2g13403' => 'nnu', 'Nn2g13760' => 'nnu', 'Nn4g26380' => 'nnu', 'Oeu000806.2' => 'oeu', 'Oeu005788.1' => 'oeu', 'Oeu006900.3' => 'oeu', 'Oeu007797.1' => 'oeu', 'Oeu011932.1' => 'oeu', 'Oeu022739.1' => 'oeu', 'Oeu037918.1' => 'oeu', 'Oeu055490.2' => 'oeu', 'Os01g0844400' => 'osa', 'Os02g0819100' => 'osa', 'Os03g0804300' => 'osa', 'Os05g0458000' => 'osa', 'Os07g0467800' => 'osa', 'Os12g0602200' => 'osa', 'Peaxi162Scf00013g03444' => 'pax', 'Peaxi162Scf00094g01120' => 'pax', 'Peaxi162Scf00191g01211' => 'pax', 'Peaxi162Scf00238g01110' => 'pax', 'Peaxi162Scf00330g00719' => 'pax', 'Peaxi162Scf00627g00018' => 'pax', 'PGR031G2686' => 'pgr', 'PGR042G0809' => 'pgr', 'PGR142G0193' => 'pgr', 'PGSC0003DMG400011066' => 'stu', 'PGSC0003DMG400012041' => 'stu', 'PGSC0003DMG400013678' => 'stu', 'PGSC0003DMG400023477' => 'stu', 'PGSC0003DMG400025956' => 'stu', 'PGSC0003DMG401019151' => 'stu', 'Phvul.006G116400' => 'pvu', 'Phvul.007G097300' => 'pvu', 'Phvul.010G015000' => 'pvu', 'Phvul.010G083900' => 'pvu', 'Potri.001G117100' => 'ptr', 'Potri.002G147300' => 'ptr', 'Potri.003G115600' => 'ptr', 'Potri.006G087400' => 'ptr', 'Potri.010G226100' => 'ptr', 'Potri.014G069200' => 'ptr', 'Potri.014G104000' => 'ptr', 'Potri.016G100200' => 'ptr', 'Pp3c10_20450' => 'ppa', 'Pp3c1_42400' => 'ppa', 'Pp3c3_24390' => 'ppa', 'Pp3c3_2860' => 'ppa', 'PRCOL_00003193' => 'pco', 'Prupe.2G144500' => 'ppe', 'Prupe.2G195700' => 'ppe', 'Prupe.2G209800' => 'ppe', 'Prupe.5G080000' => 'ppe', 'Prupe.6G257900' => 'ppe', 'Psat3g001160' => 'psa', 'Psat6g181880' => 'psa', 'Psat7g233720' => 'psa', 'PSO063G7587' => 'pso', 'PSO339G2145' => 'pso', 'PSO339G3369' => 'pso', 'PSO478G2747' => 'pso', 'PSO513G0140' => 'pso', 'PSO782G1614' => 'pso', 'PSO782G4889' => 'pso', 'PSO782G5485' => 'pso', 'PSO801G0241' => 'pso', 'QL07p048854' => 'qlo', 'QL08p046745' => 'qlo', 'QL08p052606' => 'qlo', 'QL08p053414' => 'qlo', 'QL08p054868' => 'qlo', 'RcHm_v2.0_Chr1g0350251' => 'rch', 'RcHm_v2.0_Chr1g0360851' => 'rch', 'RcHm_v2.0_Chr1g0362791' => 'rch', 'RcHm_v2.0_Chr3g0466281' => 'rch', 'RcHm_v2.0_Chr7g0201481' => 'rch', 'Rhsim01G0148600' => 'rsi', 'Rhsim05G0194400' => 'rsi', 'Rhsim07G0000700' => 'rsi', 'Rhsim07G0000800' => 'rsi', 'Rhsim07G0027900' => 'rsi', 'Rhsim09G0149500' => 'rsi', 'RhsimUnG0186900' => 'rsi', 'Sabra01G0089900' => 'sbr', 'Sabra02G0114700' => 'sbr', 'Sabra02G0116300' => 'sbr', 'Sabra03G0080100' => 'sbr', 'Sabra08G0024300' => 'sbr', 'Sabra10G0174300' => 'sbr', 'Sabra14G0048900' => 'sbr', 'Sabra14G0076500' => 'sbr', 'SalBow5G2513' => 'sbo', 'Sc01g0002300' => 'sci', 'Sc01g0004450' => 'sci', 'Sc06g0001680' => 'sci', 'Sc23g0003580' => 'sci', 'Sed0000913' => 'sed', 'Sed0001655' => 'sed', 'Sed0007745' => 'sed', 'Sed0010951' => 'sed', 'Sed0017599' => 'sed', 'Sed0021405' => 'sed', 'Sed0022810' => 'sed', 'SEGI_07099' => 'sgi', 'SEGI_11931' => 'sgi', 'SEGI_13187' => 'sgi', 'SEGI_29958' => 'sgi', 'SEGI_36351' => 'sgi', 'SGA_v2.0_scaffold126G33770' => 'sas', 'SGA_v2.0_scaffold153G37003' => 'sas', 'SGA_v2.0_scaffold2G01359' => 'sas', 'SGA_v2.0_scaffold5G03064' => 'sas', 'SGA_v2.0_scaffold95G28903' => 'sas', 'SHI12701' => 'shi', 'SHI26410' => 'shi', 'SHI38997' => 'shi', 'SHI53759' => 'shi', 'SHI53886' => 'shi', 'SHI54714' => 'shi', 'SMO011G0041' => 'smo', 'SMO146G0251' => 'smo', 'SMO160G0004' => 'smo', 'SMO174G0057' => 'smo', 'SMO244G0089' => 'smo', 'SMO296G0011' => 'smo', 'Solyc01g091280.3' => 'sly', 'Solyc05g047610.3' => 'sly', 'Solyc05g047640.3' => 'sly', 'Solyc05g055630.3' => 'sly', 'Solyc10g018160.2' => 'sly', 'Solyc10g084820.2' => 'sly', 'Solyc10g086565.2' => 'sly', 'Sopen01g037030' => 'spe', 'Sopen05g027920' => 'spe', 'Sopen05g034070' => 'spe', 'Sopen10g007260' => 'spe', 'Sopen10g034260' => 'spe', 'Sopen10g035950' => 'spe', 'Sp3g07710' => 'spa', 'Sp4g27420' => 'spa', 'Sp5g02450' => 'spa', 'Sp6g01280' => 'spa', 'Sp6g38480' => 'spa', 'Sp7g20780' => 'spa', 'TAR374G1413' => 'tar', 'TAR623G1777' => 'tar', 'TAR629G2370' => 'tar', 'TAR633G1759' => 'tar', 'TAR636G3387' => 'tar', 'THA.LOC104802447' => 'tha', 'THA.LOC104813916' => 'tha', 'THA.LOC104816423' => 'tha', 'THA.LOC104817246' => 'tha', 'THA.LOC104825895' => 'tha', 'Thecc.01G335200' => 'tca', 'Thecc.01G377400' => 'tca', 'Thecc.03G262200' => 'tca', 'Thecc.05G036800' => 'tca', 'Thecc.10G080500' => 'tca', 'Thecc.10G080800' => 'tca', 'Thhalv10001560m.g' => 'esa', 'Thhalv10006120m.g' => 'esa', 'Thhalv10014375m.g' => 'esa', 'Thhalv10021264m.g' => 'esa', 'Thhalv10028856m.g' => 'esa', 'TPR.G1914' => 'tpr', 'TPR.G4757' => 'tpr', 'TPR.G5595' => 'tpr', 'TWI14G0952' => 'twi', 'TWI14G1307' => 'twi', 'TWI38G2143' => 'twi', 'TWI59G0826' => 'twi', 'TWI77G0527' => 'twi', 'TWI81G0150' => 'twi', 'unitig_21.g21018' => 'ugi', 'unitig_26.g9725' => 'ugi', 'unitig_744.g24653' => 'ugi', 'unitig_749.g13778' => 'ugi', 'unitig_899.g15035' => 'ugi', 'vmacro04296' => 'vma', 'vmacro04852' => 'vma', 'vmacro13404' => 'vma', 'vmacro20169' => 'vma', 'vmacro21014' => 'vma', 'VMungo0331G0237' => 'vmu', 'VMungo0331G0706' => 'vmu', 'VMungo0331G1361' => 'vmu', 'VMungo0331G1489' => 'vmu', 'VMungo0540G1037' => 'vmu', 'VMungo0720G2487' => 'vmu', 'VMungo0720G2721' => 'vmu', 'Zm00001eb086860' => 'zma', 'Zm00001eb104760' => 'zma', 'Zm00001eb148220' => 'zma', 'Zm00001eb259030' => 'zma', 'Zm00001eb289590' => 'zma', 'Zm00001eb420150' => 'zma' ) $gf_id = 'HOM05D000968' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000968' ) $data_identifier = 'HOM05D000968' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 19, 'bol' => (int) 9, 'bra' => (int) 12, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 5, 'ccan' => (int) 7, 'cde' => (int) 5, 'cfa' => (int) 8, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 4, 'dca' => (int) 5, 'din' => (int) 5, 'dzi' => (int) 12, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 25, 'fve' => (int) 5, 'gma' => (int) 9, 'ghi' => (int) 18, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 7, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 5, 'sun' => (int) 2, 'lal' => (int) 9, 'lja' => (int) 5, 'lonja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 9, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 2, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 3, 'stu' => (int) 6, 'pvu' => (int) 4, 'ptr' => (int) 8, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 3, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 1, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 5, 'sas' => (int) 5, 'shi' => (int) 6, 'smo' => (int) 6, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 3, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420150' $species_info = array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ) $local_species = 'han' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000968', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p31690' => 'bna', 'A03p36040' => 'bna', 'A03p53730' => 'bna', 'A04p01410' => 'bna', 'A05p05420' => 'bna', 'A05p39630' => 'bna', 'A05p39640' => 'bna', 'A09p00970' => 'bna', 'A09p53060' => 'bna', 'A10p31890' => 'bna', 'Aa31LG10G15040' => 'aar', 'Aa31LG1G21090' => 'aar', 'Aa31LG1G26900' => 'aar', 'Aa31LG3G1820' => 'aar', 'Aa31LG5G1100' => 'aar', 'Aa31LG6G4740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2265' => 'aag', 'Actinidia07998' => 'ach', 'Actinidia11266' => 'ach', 'Actinidia12682' => 'ach', 'Actinidia26479' => 'ach', 'Actinidia31406' => 'ach', 'Actinidia32437' => 'ach', 'Actinidia38862' => 'ach', 'Ah.05g174230' => 'amhyb', 'Ah.05g179070' => 'amhyb', 'Ah.05g179090' => 'amhyb', 'Ah.12g059950' => 'amhyb', 'AL3G20480' => 'aly', 'AL4G44520' => 'aly', 'AL5G43110' => 'aly', 'AL6G13890' => 'aly', 'AL6G52620' => 'aly', 'AL7G30830' => 'aly', 'Aqoxy1G00899' => 'aox', 'Aqoxy5G04333' => 'aox', 'Aqoxy7G00641' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3IZ0NN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4EF6AW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W9P8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79GA3M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C43NQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFCU6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G95YVJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCHK29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LU1UG8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX91RN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGB4B1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8DA0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9H7JI' => 'arhy', 'AT3G09320' => 'ath', 'AT3G60800' => 'ath', 'AT4G00840' => 'ath', 'AT4G22750' => 'ath', 'AT5G04270' => 'ath', 'ATR0090G003' => 'atr', 'ATR0559G349' => 'atr', 'ATR0680G261' => 'atr', 'ATR0810G048' => 'atr', 'Atru.chr12.831' => 'acertr', 'Atru.chr5.303' => 'acertr', 'Atru.chr5.748' => 'acertr', 'Atru.chr8.1999' => 'acertr', 'Atru.chr9.1436' => 'acertr', 'AUR62004211' => 'cqu', 'AUR62004548' => 'cqu', 'AUR62013637' => 'cqu', 'AUR62022662' => 'cqu', 'AUR62025777' => 'cqu', 'AUR62042386' => 'cqu', 'BcaB01g02310' => 'bca', 'BcaB01g06062' => 'bca', 'BcaB02g08975' => 'bca', 'BcaB02g08980' => 'bca', 'BcaC01g04228' => 'bca', 'BcaC01g06830' => 'bca', 'BcaC02g10186' => 'bca', 'BcaC02g12214' => 'bca', 'BcaC04g24101' => 'bca', 'BcaC05g29520' => 'bca', 'BcaC05g29661' => 'bca', 'BcaC06g32130' => 'bca', 'BcaC06g32131' => 'bca', 'BcaC07g40601' => 'bca', 'BcaC07g42641' => 'bca', 'BcaNung01038' => 'bca', 'BcaNung01676' => 'bca', 'BcaNung02480' => 'bca', 'BcaNung07376' => 'bca', 'BolC3t16146H' => 'bol', 'BolC3t16637H' => 'bol', 'BolC4t22257H' => 'bol', 'BolC4t24728H' => 'bol', 'BolC5t34517H' => 'bol', 'BolC7t45703H' => 'bol', 'BolC8t51166H' => 'bol', 'BolC9t53038H' => 'bol', 'BolC9t60000H' => 'bol', 'BraA01t01345Z' => 'bra', 'BraA01t01346Z' => 'bra', 'BraA01t01348Z' => 'bra', 'BraA03t12347Z' => 'bra', 'BraA03t12775Z' => 'bra', 'BraA03t14439Z' => 'bra', 'BraA04t15860Z' => 'bra', 'BraA05t19511Z' => 'bra', 'BraA05t22746Z' => 'bra', 'BraA09t35767Z' => 'bra', 'BraA09t40732Z' => 'bra', 'BraA10t45233Z' => 'bra', 'C03p38720' => 'bna', 'C03p43680' => 'bna', 'C04p06350' => 'bna', 'C04p31800' => 'bna', 'C05p58680' => 'bna', 'C07p52110' => 'bna', 'C08p35760' => 'bna', 'C09p01050' => 'bna', 'C09p72600' => 'bna', 'CAN.G106.2' => 'can', 'CAN.G1482.1' => 'can', 'CAN.G324.12' => 'can', 'CAN.G388.20' => 'can', 'CAN.G412.7' => 'can', 'CAN.G694.32' => 'can', 'CAN.G92.12' => 'can', 'CANSAT11G2353' => 'cansat', 'CANSAT21G1398' => 'cansat', 'CANSAT56G2456' => 'cansat', 'CANSAT56G3031' => 'cansat', 'CANSAT56G4539' => 'cansat', 'CARHR083680' => 'chi', 'CARHR171190' => 'chi', 'CARHR209010' => 'chi', 'CARHR229680' => 'chi', 'CARHR249490' => 'chi', 'Carub.0003s0844' => 'cru', 'Carub.0005s2755' => 'cru', 'Carub.0006s0322' => 'cru', 'Carub.0006s3586' => 'cru', 'Carub.0007s1855' => 'cru', 'Ca_07808_v3' => 'car', 'Ca_09535_v3' => 'car', 'Ca_10548_v3' => 'car', 'Ca_19913_v3' => 'car', 'Ca_19916_v3' => 'car', 'Ca_19975_v3' => 'car', 'CBR_g22876' => 'cbr', 'CBR_g22879' => 'cbr', 'CBR_g38491' => 'cbr', 'CBR_g54185' => 'cbr', 'CBR_g54190' => 'cbr', 'Cc02_g11020' => 'ccan', 'Cc02_g23920' => 'ccan', 'Cc02_g39860' => 'ccan', 'Cc02_g39870' => 'ccan', 'Cc03_g06760' => 'ccan', 'Cc06_g02450' => 'ccan', 'Cc09_g09450' => 'ccan', 'CDE02G1959' => 'cde', 'CDE04G0600' => 'cde', 'CDE07G1996' => 'cde', 'CDE07G2078' => 'cde', 'CDE11G0611' => 'cde', 'Cfa001683' => 'cfa', 'Cfa001734' => 'cfa', 'Cfa001737' => 'cfa', 'Cfa003751' => 'cfa', 'Cfa012019' => 'cfa', 'Cfa017353' => 'cfa', 'Cfa017732' => 'cfa', 'Cfa022464' => 'cfa', 'Ciclev10012400m.g' => 'ccl', 'Ciclev10021242m.g' => 'ccl', 'Ciclev10021302m.g' => 'ccl', 'Ciclev10021463m.g' => 'ccl', 'Ciclev10032359m.g' => 'ccl', 'CiPaw.01G081000' => 'cil', 'CiPaw.01G262500' => 'cil', 'CiPaw.01G269800' => 'cil', 'CiPaw.02G168400' => 'cil', 'CiPaw.05G119500' => 'cil', 'CiPaw.11G147300' => 'cil', 'ClCG01G003630' => 'cla', 'ClCG05G000510' => 'cla', 'ClCG05G002300' => 'cla', 'ClCG08G007650' => 'cla', 'ClCG10G021250' => 'cla', 'COL.COLO4_06218' => 'col', 'COL.COLO4_12538' => 'col', 'COL.COLO4_14775' => 'col', 'COL.COLO4_23875' => 'col', 'Cpa.g.sc141.16' => 'cpa', 'Cpa.g.sc169.16' => 'cpa', 'Cpa.g.sc244.4' => 'cpa', 'Cpa.g.sc244.5' => 'cpa', 'Cpa.g.sc29.87' => 'cpa', 'Cpa.g.sc53.115' => 'cpa', 'Cre03.g207502' => 'cre', 'Cre06.g277000' => 'cre', 'Cre09.g394050' => 'cre', 'CsaV3_3G007680' => 'csa', 'CsaV3_3G009710' => 'csa', 'CsaV3_3G034790' => 'csa', 'CsaV3_5G003750' => 'csa', 'CsaV3_6G036620' => 'csa', 'CSS0002288' => 'camsi', 'CSS0011250' => 'camsi', 'CSS0021619' => 'camsi', 'CSS0046701' => 'camsi', 'DCAR_006420' => 'dca', 'DCAR_006865' => 'dca', 'DCAR_008558' => 'dca', 'DCAR_028754' => 'dca', 'DCAR_028755' => 'dca', 'Dinv31218' => 'din', 'Dinv32371' => 'din', 'Dinv34250' => 'din', 'Dinv37156' => 'din', 'Dinv43704' => 'din', 'Duzib093G1811' => 'dzi', 'Duzib106G1622' => 'dzi', 'Duzib114G0504' => 'dzi', 'Duzib128G0338' => 'dzi', 'Duzib128G1577' => 'dzi', 'Duzib133G0104' => 'dzi', 'Duzib133G1080' => 'dzi', 'Duzib138G0324' => 'dzi', 'Duzib138G0394' => 'dzi', 'Duzib205G0122' => 'dzi', 'Duzib268G1020' => 'dzi', 'Duzib268G1359' => 'dzi', 'ECA232G3929' => 'eca', 'ECA236G2210' => 'eca', 'ECA236G2287' => 'eca', 'ECA240G4568' => 'eca', 'ECA247G0894' => 'eca', 'EL10Ac1g00200' => 'bvu', 'EL10Ac1g00886' => 'bvu', 'EL10As1g23091' => 'bvu', 'EL10As1g23092' => 'bvu', 'Eucgr.A01284' => 'egr', 'Eucgr.A01285' => 'egr', 'Eucgr.D02456' => 'egr', 'Eucgr.E00018' => 'egr', 'Eucgr.E01439' => 'egr', 'Eucgr.G02859' => 'egr', 'FAN01G0168' => 'fan', 'FAN01G0453' => 'fan', 'FAN01G2761' => 'fan', 'FAN02G1239' => 'fan', 'FAN03G0645' => 'fan', 'FAN03G2707' => 'fan', 'FAN03G2978' => 'fan', 'FAN04G0227' => 'fan', 'FAN06G0091' => 'fan', 'FAN06G1418' => 'fan', 'FAN06G1512' => 'fan', 'FAN06G1986' => 'fan', 'FAN06G2905' => 'fan', 'FAN06G4325' => 'fan', 'FAN08G0033' => 'fan', 'FAN09G0642' => 'fan', 'FAN10G1763' => 'fan', 'FAN10G2026' => 'fan', 'FAN10G2513' => 'fan', 'FAN10G3402' => 'fan', 'FAN10G3564' => 'fan', 'FAN10G3987' => 'fan', 'FAN13G1490' => 'fan', 'FAN14G5857' => 'fan', 'FAN18G1188' => 'fan', 'FvH4_5g00750' => 'fve', 'FvH4_6g13410' => 'fve', 'FvH4_7g11740' => 'fve', 'FvH4_7g17410' => 'fve', 'FvH4_7g18860' => 'fve', 'Glyma.01G099100' => 'gma', 'Glyma.01G142300' => 'gma', 'Glyma.03G025500' => 'gma', 'Glyma.03G069700' => 'gma', 'Glyma.03G260000' => 'gma', 'Glyma.09G269800' => 'gma', 'Glyma.10G208700' => 'gma', 'Glyma.18G220400' => 'gma', 'Glyma.20G182000' => 'gma', 'Gohir.A01G221726' => 'ghi', 'Gohir.A07G134600' => 'ghi', 'Gohir.A07G146000' => 'ghi', 'Gohir.A08G173900' => 'ghi', 'Gohir.A09G194900' => 'ghi', 'Gohir.A10G204100' => 'ghi', 'Gohir.A11G080600' => 'ghi', 'Gohir.A11G327500' => 'ghi', 'Gohir.A12G101800' => 'ghi', 'Gohir.D01G211200' => 'ghi', 'Gohir.D07G139200' => 'ghi', 'Gohir.D07G152100' => 'ghi', 'Gohir.D08G192600' => 'ghi', 'Gohir.D09G189200' => 'ghi', 'Gohir.D10G212000' => 'ghi', 'Gohir.D11G085200' => 'ghi', 'Gohir.D11G346400' => 'ghi', 'Gohir.D12G104800' => 'ghi', 'Gorai.001G151300' => 'gra', 'Gorai.001G174100' => 'gra', 'Gorai.002G257000' => 'gra', 'Gorai.004G202600' => 'gra', 'Gorai.007G090900' => 'gra', 'Gorai.007G376700' => 'gra', 'Gorai.008G114100' => 'gra', 'Gorai.011G237900' => 'gra', 'GSVIVG01005450001' => 'vvi', 'GSVIVG01016232001' => 'vvi', 'GSVIVG01026157001' => 'vvi', 'GSVIVG01027419001' => 'vvi', 'GSVIVG01027631001' => 'vvi', 'GSVIVG01034143001' => 'vvi', 'HanXRQChr03g0093921' => 'han', 'HanXRQChr04g0120001' => 'han', 'HanXRQChr04g0122561' => 'han', 'HanXRQChr09g0246851' => 'han', 'HanXRQChr10g0293311' => 'han', 'HanXRQChr13g0425231' => 'han', 'HanXRQChr16g0532571' => 'han', 'Haze_09050' => 'cav', 'Haze_15715' => 'cav', 'Haze_15716' => 'cav', 'Haze_16803' => 'cav', 'Haze_16850' => 'cav', 'Hma1.2p1_0301F.1_g118655' => 'hma', 'Hma1.2p1_0309F.1_g120590' => 'hma', 'Hma1.2p1_0936F.1_g238900' => 'hma', 'Hma1.2p1_3552F.1_g336740' => 'hma', 'HPP92_003520' => 'vpl', 'HPP92_006628' => 'vpl', 'HPP92_006645' => 'vpl', 'HPP92_014669' => 'vpl', 'HPP92_015077' => 'vpl', 'Hund16742' => 'sun', 'Hund17022' => 'sun', 'Lalb_Chr02g0152131' => 'lal', 'Lalb_Chr05g0225371' => 'lal', 'Lalb_Chr07g0189841' => 'lal', 'Lalb_Chr07g0192961' => 'lal', 'Lalb_Chr12g0208221' => 'lal', 'Lalb_Chr13g0291211' => 'lal', 'Lalb_Chr13g0291781' => 'lal', 'Lalb_Chr18g0044651' => 'lal', 'Lalb_Chr21g0313731' => 'lal', 'Lj1g0022533' => 'lja', 'Lj2A18T50' => 'lonja', 'Lj2A92G93' => 'lonja', 'Lj3A965T73' => 'lonja', 'Lj3g0000673' => 'lja', 'Lj3g0002666' => 'lja', 'Lj4g0016985' => 'lja', 'Lj5g0003625' => 'lja', 'Lj7A529G36' => 'lonja', 'Lj9A569T49' => 'lonja', 'Lj9A604T63' => 'lonja', 'Lsat_1_v5_gn_3_132060' => 'lsa', 'Lsat_1_v5_gn_4_68941' => 'lsa', 'Lsat_1_v5_gn_5_95580' => 'lsa', 'Lsat_1_v5_gn_7_161' => 'lsa', 'Lsat_1_v5_gn_7_7041' => 'lsa', 'Lsat_1_v5_gn_9_33481' => 'lsa', 'Lsat_1_v5_gn_9_68260' => 'lsa', 'Manes.01G073100' => 'mes', 'Manes.01G266300' => 'mes', 'Manes.02G033300' => 'mes', 'Manes.05G017900' => 'mes', 'Manes.05G046100' => 'mes', 'Manes.08G080900' => 'mes', 'Manes.10G049400' => 'mes', 'Mapoly0009s0186' => 'mpo', 'Mapoly0036s0118' => 'mpo', 'Mapoly0101s0046' => 'mpo', 'MBI04_g30218_MAGBIO' => 'mbi', 'MBI04_g35564_MAGBIO' => 'mbi', 'MBI12_g34011_MAGBIO' => 'mbi', 'MBI14_g04655_MAGBIO' => 'mbi', 'MCO07G653' => 'mco', 'MCO10G173' => 'mco', 'MD01G1087100' => 'mdo', 'MD01G1104200' => 'mdo', 'MD02G1205100' => 'mdo', 'MD04G1079200' => 'mdo', 'MD04G1131400' => 'mdo', 'MD07G1121600' => 'mdo', 'MD07G1157300' => 'mdo', 'MD07G1171000' => 'mdo', 'MD12G1144500' => 'mdo', 'Medtr1g094610' => 'mtr', 'Medtr4g021795' => 'mtr', 'Medtr4g023760' => 'mtr', 'Medtr7g118050' => 'mtr', 'MELO3C005582.2' => 'cme', 'MELO3C005989.2' => 'cme', 'MELO3C006192.2' => 'cme', 'MELO3C009248.2' => 'cme', 'MELO3C019817.2' => 'cme', 'Migut.B01625' => 'egut', 'Migut.B01915' => 'egut', 'Migut.F01721' => 'egut', 'Migut.J00314' => 'egut', 'MSTRG.20742' => 'ama', 'MSTRG.8134' => 'ama', 'Nitab4.5_0000096g0010' => 'nta', 'Nitab4.5_0000202g0030' => 'nta', 'Nitab4.5_0000216g0370' => 'nta', 'Nitab4.5_0000457g0230' => 'nta', 'Nitab4.5_0001702g0170' => 'nta', 'Nitab4.5_0003607g0010' => 'nta', 'Nitab4.5_0004917g0020' => 'nta', 'Nitab4.5_0007059g0010' => 'nta', 'Nitab4.5_0007184g0010' => 'nta', 'Nitab4.5_0007346g0020' => 'nta', 'Nn1g00410' => 'nnu', 'Nn1g01252' => 'nnu', 'Nn2g11168' => 'nnu', 'Nn2g13403' => 'nnu', 'Nn2g13760' => 'nnu', 'Nn4g26380' => 'nnu', 'Oeu000806.2' => 'oeu', 'Oeu005788.1' => 'oeu', 'Oeu006900.3' => 'oeu', 'Oeu007797.1' => 'oeu', 'Oeu011932.1' => 'oeu', 'Oeu022739.1' => 'oeu', 'Oeu037918.1' => 'oeu', 'Oeu055490.2' => 'oeu', 'Os01g0844400' => 'osa', 'Os02g0819100' => 'osa', 'Os03g0804300' => 'osa', 'Os05g0458000' => 'osa', 'Os07g0467800' => 'osa', 'Os12g0602200' => 'osa', 'Peaxi162Scf00013g03444' => 'pax', 'Peaxi162Scf00094g01120' => 'pax', 'Peaxi162Scf00191g01211' => 'pax', 'Peaxi162Scf00238g01110' => 'pax', 'Peaxi162Scf00330g00719' => 'pax', 'Peaxi162Scf00627g00018' => 'pax', 'PGR031G2686' => 'pgr', 'PGR042G0809' => 'pgr', 'PGR142G0193' => 'pgr', 'PGSC0003DMG400011066' => 'stu', 'PGSC0003DMG400012041' => 'stu', 'PGSC0003DMG400013678' => 'stu', 'PGSC0003DMG400023477' => 'stu', 'PGSC0003DMG400025956' => 'stu', 'PGSC0003DMG401019151' => 'stu', 'Phvul.006G116400' => 'pvu', 'Phvul.007G097300' => 'pvu', 'Phvul.010G015000' => 'pvu', 'Phvul.010G083900' => 'pvu', 'Potri.001G117100' => 'ptr', 'Potri.002G147300' => 'ptr', 'Potri.003G115600' => 'ptr', 'Potri.006G087400' => 'ptr', 'Potri.010G226100' => 'ptr', 'Potri.014G069200' => 'ptr', 'Potri.014G104000' => 'ptr', 'Potri.016G100200' => 'ptr', 'Pp3c10_20450' => 'ppa', 'Pp3c1_42400' => 'ppa', 'Pp3c3_24390' => 'ppa', 'Pp3c3_2860' => 'ppa', 'PRCOL_00003193' => 'pco', 'Prupe.2G144500' => 'ppe', 'Prupe.2G195700' => 'ppe', 'Prupe.2G209800' => 'ppe', 'Prupe.5G080000' => 'ppe', 'Prupe.6G257900' => 'ppe', 'Psat3g001160' => 'psa', 'Psat6g181880' => 'psa', 'Psat7g233720' => 'psa', 'PSO063G7587' => 'pso', 'PSO339G2145' => 'pso', 'PSO339G3369' => 'pso', 'PSO478G2747' => 'pso', 'PSO513G0140' => 'pso', 'PSO782G1614' => 'pso', 'PSO782G4889' => 'pso', 'PSO782G5485' => 'pso', 'PSO801G0241' => 'pso', 'QL07p048854' => 'qlo', 'QL08p046745' => 'qlo', 'QL08p052606' => 'qlo', 'QL08p053414' => 'qlo', 'QL08p054868' => 'qlo', 'RcHm_v2.0_Chr1g0350251' => 'rch', 'RcHm_v2.0_Chr1g0360851' => 'rch', 'RcHm_v2.0_Chr1g0362791' => 'rch', 'RcHm_v2.0_Chr3g0466281' => 'rch', 'RcHm_v2.0_Chr7g0201481' => 'rch', 'Rhsim01G0148600' => 'rsi', 'Rhsim05G0194400' => 'rsi', 'Rhsim07G0000700' => 'rsi', 'Rhsim07G0000800' => 'rsi', 'Rhsim07G0027900' => 'rsi', 'Rhsim09G0149500' => 'rsi', 'RhsimUnG0186900' => 'rsi', 'Sabra01G0089900' => 'sbr', 'Sabra02G0114700' => 'sbr', 'Sabra02G0116300' => 'sbr', 'Sabra03G0080100' => 'sbr', 'Sabra08G0024300' => 'sbr', 'Sabra10G0174300' => 'sbr', 'Sabra14G0048900' => 'sbr', 'Sabra14G0076500' => 'sbr', 'SalBow5G2513' => 'sbo', 'Sc01g0002300' => 'sci', 'Sc01g0004450' => 'sci', 'Sc06g0001680' => 'sci', 'Sc23g0003580' => 'sci', 'Sed0000913' => 'sed', 'Sed0001655' => 'sed', 'Sed0007745' => 'sed', 'Sed0010951' => 'sed', 'Sed0017599' => 'sed', 'Sed0021405' => 'sed', 'Sed0022810' => 'sed', 'SEGI_07099' => 'sgi', 'SEGI_11931' => 'sgi', 'SEGI_13187' => 'sgi', 'SEGI_29958' => 'sgi', 'SEGI_36351' => 'sgi', 'SGA_v2.0_scaffold126G33770' => 'sas', 'SGA_v2.0_scaffold153G37003' => 'sas', 'SGA_v2.0_scaffold2G01359' => 'sas', 'SGA_v2.0_scaffold5G03064' => 'sas', 'SGA_v2.0_scaffold95G28903' => 'sas', 'SHI12701' => 'shi', 'SHI26410' => 'shi', 'SHI38997' => 'shi', 'SHI53759' => 'shi', 'SHI53886' => 'shi', 'SHI54714' => 'shi', 'SMO011G0041' => 'smo', 'SMO146G0251' => 'smo', 'SMO160G0004' => 'smo', 'SMO174G0057' => 'smo', 'SMO244G0089' => 'smo', 'SMO296G0011' => 'smo', 'Solyc01g091280.3' => 'sly', 'Solyc05g047610.3' => 'sly', 'Solyc05g047640.3' => 'sly', 'Solyc05g055630.3' => 'sly', 'Solyc10g018160.2' => 'sly', 'Solyc10g084820.2' => 'sly', 'Solyc10g086565.2' => 'sly', 'Sopen01g037030' => 'spe', 'Sopen05g027920' => 'spe', 'Sopen05g034070' => 'spe', 'Sopen10g007260' => 'spe', 'Sopen10g034260' => 'spe', 'Sopen10g035950' => 'spe', 'Sp3g07710' => 'spa', 'Sp4g27420' => 'spa', 'Sp5g02450' => 'spa', 'Sp6g01280' => 'spa', 'Sp6g38480' => 'spa', 'Sp7g20780' => 'spa', 'TAR374G1413' => 'tar', 'TAR623G1777' => 'tar', 'TAR629G2370' => 'tar', 'TAR633G1759' => 'tar', 'TAR636G3387' => 'tar', 'THA.LOC104802447' => 'tha', 'THA.LOC104813916' => 'tha', 'THA.LOC104816423' => 'tha', 'THA.LOC104817246' => 'tha', 'THA.LOC104825895' => 'tha', 'Thecc.01G335200' => 'tca', 'Thecc.01G377400' => 'tca', 'Thecc.03G262200' => 'tca', 'Thecc.05G036800' => 'tca', 'Thecc.10G080500' => 'tca', 'Thecc.10G080800' => 'tca', 'Thhalv10001560m.g' => 'esa', 'Thhalv10006120m.g' => 'esa', 'Thhalv10014375m.g' => 'esa', 'Thhalv10021264m.g' => 'esa', 'Thhalv10028856m.g' => 'esa', 'TPR.G1914' => 'tpr', 'TPR.G4757' => 'tpr', 'TPR.G5595' => 'tpr', 'TWI14G0952' => 'twi', 'TWI14G1307' => 'twi', 'TWI38G2143' => 'twi', 'TWI59G0826' => 'twi', 'TWI77G0527' => 'twi', 'TWI81G0150' => 'twi', 'unitig_21.g21018' => 'ugi', 'unitig_26.g9725' => 'ugi', 'unitig_744.g24653' => 'ugi', 'unitig_749.g13778' => 'ugi', 'unitig_899.g15035' => 'ugi', 'vmacro04296' => 'vma', 'vmacro04852' => 'vma', 'vmacro13404' => 'vma', 'vmacro20169' => 'vma', 'vmacro21014' => 'vma', 'VMungo0331G0237' => 'vmu', 'VMungo0331G0706' => 'vmu', 'VMungo0331G1361' => 'vmu', 'VMungo0331G1489' => 'vmu', 'VMungo0540G1037' => 'vmu', 'VMungo0720G2487' => 'vmu', 'VMungo0720G2721' => 'vmu', 'Zm00001eb086860' => 'zma', 'Zm00001eb104760' => 'zma', 'Zm00001eb148220' => 'zma', 'Zm00001eb259030' => 'zma', 'Zm00001eb289590' => 'zma', 'Zm00001eb420150' => 'zma' ), 'gf_id' => 'HOM05D000968', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000968' ), 'data_identifier' => 'HOM05D000968', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000968', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p31690' => 'bna', 'A03p36040' => 'bna', 'A03p53730' => 'bna', 'A04p01410' => 'bna', 'A05p05420' => 'bna', 'A05p39630' => 'bna', 'A05p39640' => 'bna', 'A09p00970' => 'bna', 'A09p53060' => 'bna', 'A10p31890' => 'bna', 'Aa31LG10G15040' => 'aar', 'Aa31LG1G21090' => 'aar', 'Aa31LG1G26900' => 'aar', 'Aa31LG3G1820' => 'aar', 'Aa31LG5G1100' => 'aar', 'Aa31LG6G4740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2265' => 'aag', 'Actinidia07998' => 'ach', 'Actinidia11266' => 'ach', 'Actinidia12682' => 'ach', 'Actinidia26479' => 'ach', 'Actinidia31406' => 'ach', 'Actinidia32437' => 'ach', 'Actinidia38862' => 'ach', 'Ah.05g174230' => 'amhyb', 'Ah.05g179070' => 'amhyb', 'Ah.05g179090' => 'amhyb', 'Ah.12g059950' => 'amhyb', 'AL3G20480' => 'aly', 'AL4G44520' => 'aly', 'AL5G43110' => 'aly', 'AL6G13890' => 'aly', 'AL6G52620' => 'aly', 'AL7G30830' => 'aly', 'Aqoxy1G00899' => 'aox', 'Aqoxy5G04333' => 'aox', 'Aqoxy7G00641' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3IZ0NN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4EF6AW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W9P8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79GA3M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C43NQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFCU6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G95YVJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCHK29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LU1UG8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX91RN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGB4B1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8DA0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9H7JI' => 'arhy', 'AT3G09320' => 'ath', 'AT3G60800' => 'ath', 'AT4G00840' => 'ath', 'AT4G22750' => 'ath', 'AT5G04270' => 'ath', 'ATR0090G003' => 'atr', 'ATR0559G349' => 'atr', 'ATR0680G261' => 'atr', 'ATR0810G048' => 'atr', 'Atru.chr12.831' => 'acertr', 'Atru.chr5.303' => 'acertr', 'Atru.chr5.748' => 'acertr', 'Atru.chr8.1999' => 'acertr', 'Atru.chr9.1436' => 'acertr', 'AUR62004211' => 'cqu', 'AUR62004548' => 'cqu', 'AUR62013637' => 'cqu', 'AUR62022662' => 'cqu', 'AUR62025777' => 'cqu', 'AUR62042386' => 'cqu', 'BcaB01g02310' => 'bca', 'BcaB01g06062' => 'bca', 'BcaB02g08975' => 'bca', 'BcaB02g08980' => 'bca', 'BcaC01g04228' => 'bca', 'BcaC01g06830' => 'bca', 'BcaC02g10186' => 'bca', 'BcaC02g12214' => 'bca', 'BcaC04g24101' => 'bca', 'BcaC05g29520' => 'bca', 'BcaC05g29661' => 'bca', 'BcaC06g32130' => 'bca', 'BcaC06g32131' => 'bca', 'BcaC07g40601' => 'bca', 'BcaC07g42641' => 'bca', 'BcaNung01038' => 'bca', 'BcaNung01676' => 'bca', 'BcaNung02480' => 'bca', 'BcaNung07376' => 'bca', 'BolC3t16146H' => 'bol', 'BolC3t16637H' => 'bol', 'BolC4t22257H' => 'bol', 'BolC4t24728H' => 'bol', 'BolC5t34517H' => 'bol', 'BolC7t45703H' => 'bol', 'BolC8t51166H' => 'bol', 'BolC9t53038H' => 'bol', 'BolC9t60000H' => 'bol', 'BraA01t01345Z' => 'bra', 'BraA01t01346Z' => 'bra', 'BraA01t01348Z' => 'bra', 'BraA03t12347Z' => 'bra', 'BraA03t12775Z' => 'bra', 'BraA03t14439Z' => 'bra', 'BraA04t15860Z' => 'bra', 'BraA05t19511Z' => 'bra', 'BraA05t22746Z' => 'bra', 'BraA09t35767Z' => 'bra', 'BraA09t40732Z' => 'bra', 'BraA10t45233Z' => 'bra', 'C03p38720' => 'bna', 'C03p43680' => 'bna', 'C04p06350' => 'bna', 'C04p31800' => 'bna', 'C05p58680' => 'bna', 'C07p52110' => 'bna', 'C08p35760' => 'bna', 'C09p01050' => 'bna', 'C09p72600' => 'bna', 'CAN.G106.2' => 'can', 'CAN.G1482.1' => 'can', 'CAN.G324.12' => 'can', 'CAN.G388.20' => 'can', 'CAN.G412.7' => 'can', 'CAN.G694.32' => 'can', 'CAN.G92.12' => 'can', 'CANSAT11G2353' => 'cansat', 'CANSAT21G1398' => 'cansat', 'CANSAT56G2456' => 'cansat', 'CANSAT56G3031' => 'cansat', 'CANSAT56G4539' => 'cansat', 'CARHR083680' => 'chi', 'CARHR171190' => 'chi', 'CARHR209010' => 'chi', 'CARHR229680' => 'chi', 'CARHR249490' => 'chi', 'Carub.0003s0844' => 'cru', 'Carub.0005s2755' => 'cru', 'Carub.0006s0322' => 'cru', 'Carub.0006s3586' => 'cru', 'Carub.0007s1855' => 'cru', 'Ca_07808_v3' => 'car', 'Ca_09535_v3' => 'car', 'Ca_10548_v3' => 'car', 'Ca_19913_v3' => 'car', 'Ca_19916_v3' => 'car', 'Ca_19975_v3' => 'car', 'CBR_g22876' => 'cbr', 'CBR_g22879' => 'cbr', 'CBR_g38491' => 'cbr', 'CBR_g54185' => 'cbr', 'CBR_g54190' => 'cbr', 'Cc02_g11020' => 'ccan', 'Cc02_g23920' => 'ccan', 'Cc02_g39860' => 'ccan', 'Cc02_g39870' => 'ccan', 'Cc03_g06760' => 'ccan', 'Cc06_g02450' => 'ccan', 'Cc09_g09450' => 'ccan', 'CDE02G1959' => 'cde', 'CDE04G0600' => 'cde', 'CDE07G1996' => 'cde', 'CDE07G2078' => 'cde', 'CDE11G0611' => 'cde', 'Cfa001683' => 'cfa', 'Cfa001734' => 'cfa', 'Cfa001737' => 'cfa', 'Cfa003751' => 'cfa', 'Cfa012019' => 'cfa', 'Cfa017353' => 'cfa', 'Cfa017732' => 'cfa', 'Cfa022464' => 'cfa', 'Ciclev10012400m.g' => 'ccl', 'Ciclev10021242m.g' => 'ccl', 'Ciclev10021302m.g' => 'ccl', 'Ciclev10021463m.g' => 'ccl', 'Ciclev10032359m.g' => 'ccl', 'CiPaw.01G081000' => 'cil', 'CiPaw.01G262500' => 'cil', 'CiPaw.01G269800' => 'cil', 'CiPaw.02G168400' => 'cil', 'CiPaw.05G119500' => 'cil', 'CiPaw.11G147300' => 'cil', 'ClCG01G003630' => 'cla', 'ClCG05G000510' => 'cla', 'ClCG05G002300' => 'cla', 'ClCG08G007650' => 'cla', 'ClCG10G021250' => 'cla', 'COL.COLO4_06218' => 'col', 'COL.COLO4_12538' => 'col', 'COL.COLO4_14775' => 'col', 'COL.COLO4_23875' => 'col', 'Cpa.g.sc141.16' => 'cpa', 'Cpa.g.sc169.16' => 'cpa', 'Cpa.g.sc244.4' => 'cpa', 'Cpa.g.sc244.5' => 'cpa', 'Cpa.g.sc29.87' => 'cpa', 'Cpa.g.sc53.115' => 'cpa', 'Cre03.g207502' => 'cre', 'Cre06.g277000' => 'cre', 'Cre09.g394050' => 'cre', 'CsaV3_3G007680' => 'csa', 'CsaV3_3G009710' => 'csa', 'CsaV3_3G034790' => 'csa', 'CsaV3_5G003750' => 'csa', 'CsaV3_6G036620' => 'csa', 'CSS0002288' => 'camsi', 'CSS0011250' => 'camsi', 'CSS0021619' => 'camsi', 'CSS0046701' => 'camsi', 'DCAR_006420' => 'dca', 'DCAR_006865' => 'dca', 'DCAR_008558' => 'dca', 'DCAR_028754' => 'dca', 'DCAR_028755' => 'dca', 'Dinv31218' => 'din', 'Dinv32371' => 'din', 'Dinv34250' => 'din', 'Dinv37156' => 'din', 'Dinv43704' => 'din', 'Duzib093G1811' => 'dzi', 'Duzib106G1622' => 'dzi', 'Duzib114G0504' => 'dzi', 'Duzib128G0338' => 'dzi', 'Duzib128G1577' => 'dzi', 'Duzib133G0104' => 'dzi', 'Duzib133G1080' => 'dzi', 'Duzib138G0324' => 'dzi', 'Duzib138G0394' => 'dzi', 'Duzib205G0122' => 'dzi', 'Duzib268G1020' => 'dzi', 'Duzib268G1359' => 'dzi', 'ECA232G3929' => 'eca', 'ECA236G2210' => 'eca', 'ECA236G2287' => 'eca', 'ECA240G4568' => 'eca', 'ECA247G0894' => 'eca', 'EL10Ac1g00200' => 'bvu', 'EL10Ac1g00886' => 'bvu', 'EL10As1g23091' => 'bvu', 'EL10As1g23092' => 'bvu', 'Eucgr.A01284' => 'egr', 'Eucgr.A01285' => 'egr', 'Eucgr.D02456' => 'egr', 'Eucgr.E00018' => 'egr', 'Eucgr.E01439' => 'egr', 'Eucgr.G02859' => 'egr', 'FAN01G0168' => 'fan', 'FAN01G0453' => 'fan', 'FAN01G2761' => 'fan', 'FAN02G1239' => 'fan', 'FAN03G0645' => 'fan', 'FAN03G2707' => 'fan', 'FAN03G2978' => 'fan', 'FAN04G0227' => 'fan', 'FAN06G0091' => 'fan', 'FAN06G1418' => 'fan', 'FAN06G1512' => 'fan', 'FAN06G1986' => 'fan', 'FAN06G2905' => 'fan', 'FAN06G4325' => 'fan', 'FAN08G0033' => 'fan', 'FAN09G0642' => 'fan', 'FAN10G1763' => 'fan', 'FAN10G2026' => 'fan', 'FAN10G2513' => 'fan', 'FAN10G3402' => 'fan', 'FAN10G3564' => 'fan', 'FAN10G3987' => 'fan', 'FAN13G1490' => 'fan', 'FAN14G5857' => 'fan', 'FAN18G1188' => 'fan', 'FvH4_5g00750' => 'fve', 'FvH4_6g13410' => 'fve', 'FvH4_7g11740' => 'fve', 'FvH4_7g17410' => 'fve', 'FvH4_7g18860' => 'fve', 'Glyma.01G099100' => 'gma', 'Glyma.01G142300' => 'gma', 'Glyma.03G025500' => 'gma', 'Glyma.03G069700' => 'gma', 'Glyma.03G260000' => 'gma', 'Glyma.09G269800' => 'gma', 'Glyma.10G208700' => 'gma', 'Glyma.18G220400' => 'gma', 'Glyma.20G182000' => 'gma', 'Gohir.A01G221726' => 'ghi', 'Gohir.A07G134600' => 'ghi', 'Gohir.A07G146000' => 'ghi', 'Gohir.A08G173900' => 'ghi', 'Gohir.A09G194900' => 'ghi', 'Gohir.A10G204100' => 'ghi', 'Gohir.A11G080600' => 'ghi', 'Gohir.A11G327500' => 'ghi', 'Gohir.A12G101800' => 'ghi', 'Gohir.D01G211200' => 'ghi', 'Gohir.D07G139200' => 'ghi', 'Gohir.D07G152100' => 'ghi', 'Gohir.D08G192600' => 'ghi', 'Gohir.D09G189200' => 'ghi', 'Gohir.D10G212000' => 'ghi', 'Gohir.D11G085200' => 'ghi', 'Gohir.D11G346400' => 'ghi', 'Gohir.D12G104800' => 'ghi', 'Gorai.001G151300' => 'gra', 'Gorai.001G174100' => 'gra', 'Gorai.002G257000' => 'gra', 'Gorai.004G202600' => 'gra', 'Gorai.007G090900' => 'gra', 'Gorai.007G376700' => 'gra', 'Gorai.008G114100' => 'gra', 'Gorai.011G237900' => 'gra', 'GSVIVG01005450001' => 'vvi', 'GSVIVG01016232001' => 'vvi', 'GSVIVG01026157001' => 'vvi', 'GSVIVG01027419001' => 'vvi', 'GSVIVG01027631001' => 'vvi', 'GSVIVG01034143001' => 'vvi', 'HanXRQChr03g0093921' => 'han', 'HanXRQChr04g0120001' => 'han', 'HanXRQChr04g0122561' => 'han', 'HanXRQChr09g0246851' => 'han', 'HanXRQChr10g0293311' => 'han', 'HanXRQChr13g0425231' => 'han', 'HanXRQChr16g0532571' => 'han', 'Haze_09050' => 'cav', 'Haze_15715' => 'cav', 'Haze_15716' => 'cav', 'Haze_16803' => 'cav', 'Haze_16850' => 'cav', 'Hma1.2p1_0301F.1_g118655' => 'hma', 'Hma1.2p1_0309F.1_g120590' => 'hma', 'Hma1.2p1_0936F.1_g238900' => 'hma', 'Hma1.2p1_3552F.1_g336740' => 'hma', 'HPP92_003520' => 'vpl', 'HPP92_006628' => 'vpl', 'HPP92_006645' => 'vpl', 'HPP92_014669' => 'vpl', 'HPP92_015077' => 'vpl', 'Hund16742' => 'sun', 'Hund17022' => 'sun', 'Lalb_Chr02g0152131' => 'lal', 'Lalb_Chr05g0225371' => 'lal', 'Lalb_Chr07g0189841' => 'lal', 'Lalb_Chr07g0192961' => 'lal', 'Lalb_Chr12g0208221' => 'lal', 'Lalb_Chr13g0291211' => 'lal', 'Lalb_Chr13g0291781' => 'lal', 'Lalb_Chr18g0044651' => 'lal', 'Lalb_Chr21g0313731' => 'lal', 'Lj1g0022533' => 'lja', 'Lj2A18T50' => 'lonja', 'Lj2A92G93' => 'lonja', 'Lj3A965T73' => 'lonja', 'Lj3g0000673' => 'lja', 'Lj3g0002666' => 'lja', 'Lj4g0016985' => 'lja', 'Lj5g0003625' => 'lja', 'Lj7A529G36' => 'lonja', 'Lj9A569T49' => 'lonja', 'Lj9A604T63' => 'lonja', 'Lsat_1_v5_gn_3_132060' => 'lsa', 'Lsat_1_v5_gn_4_68941' => 'lsa', 'Lsat_1_v5_gn_5_95580' => 'lsa', 'Lsat_1_v5_gn_7_161' => 'lsa', 'Lsat_1_v5_gn_7_7041' => 'lsa', 'Lsat_1_v5_gn_9_33481' => 'lsa', 'Lsat_1_v5_gn_9_68260' => 'lsa', 'Manes.01G073100' => 'mes', 'Manes.01G266300' => 'mes', 'Manes.02G033300' => 'mes', 'Manes.05G017900' => 'mes', 'Manes.05G046100' => 'mes', 'Manes.08G080900' => 'mes', 'Manes.10G049400' => 'mes', 'Mapoly0009s0186' => 'mpo', 'Mapoly0036s0118' => 'mpo', 'Mapoly0101s0046' => 'mpo', 'MBI04_g30218_MAGBIO' => 'mbi', 'MBI04_g35564_MAGBIO' => 'mbi', 'MBI12_g34011_MAGBIO' => 'mbi', 'MBI14_g04655_MAGBIO' => 'mbi', 'MCO07G653' => 'mco', 'MCO10G173' => 'mco', 'MD01G1087100' => 'mdo', 'MD01G1104200' => 'mdo', 'MD02G1205100' => 'mdo', 'MD04G1079200' => 'mdo', 'MD04G1131400' => 'mdo', 'MD07G1121600' => 'mdo', 'MD07G1157300' => 'mdo', 'MD07G1171000' => 'mdo', 'MD12G1144500' => 'mdo', 'Medtr1g094610' => 'mtr', 'Medtr4g021795' => 'mtr', 'Medtr4g023760' => 'mtr', 'Medtr7g118050' => 'mtr', 'MELO3C005582.2' => 'cme', 'MELO3C005989.2' => 'cme', 'MELO3C006192.2' => 'cme', 'MELO3C009248.2' => 'cme', 'MELO3C019817.2' => 'cme', 'Migut.B01625' => 'egut', 'Migut.B01915' => 'egut', 'Migut.F01721' => 'egut', 'Migut.J00314' => 'egut', 'MSTRG.20742' => 'ama', 'MSTRG.8134' => 'ama', 'Nitab4.5_0000096g0010' => 'nta', 'Nitab4.5_0000202g0030' => 'nta', 'Nitab4.5_0000216g0370' => 'nta', 'Nitab4.5_0000457g0230' => 'nta', 'Nitab4.5_0001702g0170' => 'nta', 'Nitab4.5_0003607g0010' => 'nta', 'Nitab4.5_0004917g0020' => 'nta', 'Nitab4.5_0007059g0010' => 'nta', 'Nitab4.5_0007184g0010' => 'nta', 'Nitab4.5_0007346g0020' => 'nta', 'Nn1g00410' => 'nnu', 'Nn1g01252' => 'nnu', 'Nn2g11168' => 'nnu', 'Nn2g13403' => 'nnu', 'Nn2g13760' => 'nnu', 'Nn4g26380' => 'nnu', 'Oeu000806.2' => 'oeu', 'Oeu005788.1' => 'oeu', 'Oeu006900.3' => 'oeu', 'Oeu007797.1' => 'oeu', 'Oeu011932.1' => 'oeu', 'Oeu022739.1' => 'oeu', 'Oeu037918.1' => 'oeu', 'Oeu055490.2' => 'oeu', 'Os01g0844400' => 'osa', 'Os02g0819100' => 'osa', 'Os03g0804300' => 'osa', 'Os05g0458000' => 'osa', 'Os07g0467800' => 'osa', 'Os12g0602200' => 'osa', 'Peaxi162Scf00013g03444' => 'pax', 'Peaxi162Scf00094g01120' => 'pax', 'Peaxi162Scf00191g01211' => 'pax', 'Peaxi162Scf00238g01110' => 'pax', 'Peaxi162Scf00330g00719' => 'pax', 'Peaxi162Scf00627g00018' => 'pax', 'PGR031G2686' => 'pgr', 'PGR042G0809' => 'pgr', 'PGR142G0193' => 'pgr', 'PGSC0003DMG400011066' => 'stu', 'PGSC0003DMG400012041' => 'stu', 'PGSC0003DMG400013678' => 'stu', 'PGSC0003DMG400023477' => 'stu', 'PGSC0003DMG400025956' => 'stu', 'PGSC0003DMG401019151' => 'stu', 'Phvul.006G116400' => 'pvu', 'Phvul.007G097300' => 'pvu', 'Phvul.010G015000' => 'pvu', 'Phvul.010G083900' => 'pvu', 'Potri.001G117100' => 'ptr', 'Potri.002G147300' => 'ptr', 'Potri.003G115600' => 'ptr', 'Potri.006G087400' => 'ptr', 'Potri.010G226100' => 'ptr', 'Potri.014G069200' => 'ptr', 'Potri.014G104000' => 'ptr', 'Potri.016G100200' => 'ptr', 'Pp3c10_20450' => 'ppa', 'Pp3c1_42400' => 'ppa', 'Pp3c3_24390' => 'ppa', 'Pp3c3_2860' => 'ppa', 'PRCOL_00003193' => 'pco', 'Prupe.2G144500' => 'ppe', 'Prupe.2G195700' => 'ppe', 'Prupe.2G209800' => 'ppe', 'Prupe.5G080000' => 'ppe', 'Prupe.6G257900' => 'ppe', 'Psat3g001160' => 'psa', 'Psat6g181880' => 'psa', 'Psat7g233720' => 'psa', 'PSO063G7587' => 'pso', 'PSO339G2145' => 'pso', 'PSO339G3369' => 'pso', 'PSO478G2747' => 'pso', 'PSO513G0140' => 'pso', 'PSO782G1614' => 'pso', 'PSO782G4889' => 'pso', 'PSO782G5485' => 'pso', 'PSO801G0241' => 'pso', 'QL07p048854' => 'qlo', 'QL08p046745' => 'qlo', 'QL08p052606' => 'qlo', 'QL08p053414' => 'qlo', 'QL08p054868' => 'qlo', 'RcHm_v2.0_Chr1g0350251' => 'rch', 'RcHm_v2.0_Chr1g0360851' => 'rch', 'RcHm_v2.0_Chr1g0362791' => 'rch', 'RcHm_v2.0_Chr3g0466281' => 'rch', 'RcHm_v2.0_Chr7g0201481' => 'rch', 'Rhsim01G0148600' => 'rsi', 'Rhsim05G0194400' => 'rsi', 'Rhsim07G0000700' => 'rsi', 'Rhsim07G0000800' => 'rsi', 'Rhsim07G0027900' => 'rsi', 'Rhsim09G0149500' => 'rsi', 'RhsimUnG0186900' => 'rsi', 'Sabra01G0089900' => 'sbr', 'Sabra02G0114700' => 'sbr', 'Sabra02G0116300' => 'sbr', 'Sabra03G0080100' => 'sbr', 'Sabra08G0024300' => 'sbr', 'Sabra10G0174300' => 'sbr', 'Sabra14G0048900' => 'sbr', 'Sabra14G0076500' => 'sbr', 'SalBow5G2513' => 'sbo', 'Sc01g0002300' => 'sci', 'Sc01g0004450' => 'sci', 'Sc06g0001680' => 'sci', 'Sc23g0003580' => 'sci', 'Sed0000913' => 'sed', 'Sed0001655' => 'sed', 'Sed0007745' => 'sed', 'Sed0010951' => 'sed', 'Sed0017599' => 'sed', 'Sed0021405' => 'sed', 'Sed0022810' => 'sed', 'SEGI_07099' => 'sgi', 'SEGI_11931' => 'sgi', 'SEGI_13187' => 'sgi', 'SEGI_29958' => 'sgi', 'SEGI_36351' => 'sgi', 'SGA_v2.0_scaffold126G33770' => 'sas', 'SGA_v2.0_scaffold153G37003' => 'sas', 'SGA_v2.0_scaffold2G01359' => 'sas', 'SGA_v2.0_scaffold5G03064' => 'sas', 'SGA_v2.0_scaffold95G28903' => 'sas', 'SHI12701' => 'shi', 'SHI26410' => 'shi', 'SHI38997' => 'shi', 'SHI53759' => 'shi', 'SHI53886' => 'shi', 'SHI54714' => 'shi', 'SMO011G0041' => 'smo', 'SMO146G0251' => 'smo', 'SMO160G0004' => 'smo', 'SMO174G0057' => 'smo', 'SMO244G0089' => 'smo', 'SMO296G0011' => 'smo', 'Solyc01g091280.3' => 'sly', 'Solyc05g047610.3' => 'sly', 'Solyc05g047640.3' => 'sly', 'Solyc05g055630.3' => 'sly', 'Solyc10g018160.2' => 'sly', 'Solyc10g084820.2' => 'sly', 'Solyc10g086565.2' => 'sly', 'Sopen01g037030' => 'spe', 'Sopen05g027920' => 'spe', 'Sopen05g034070' => 'spe', 'Sopen10g007260' => 'spe', 'Sopen10g034260' => 'spe', 'Sopen10g035950' => 'spe', 'Sp3g07710' => 'spa', 'Sp4g27420' => 'spa', 'Sp5g02450' => 'spa', 'Sp6g01280' => 'spa', 'Sp6g38480' => 'spa', 'Sp7g20780' => 'spa', 'TAR374G1413' => 'tar', 'TAR623G1777' => 'tar', 'TAR629G2370' => 'tar', 'TAR633G1759' => 'tar', 'TAR636G3387' => 'tar', 'THA.LOC104802447' => 'tha', 'THA.LOC104813916' => 'tha', 'THA.LOC104816423' => 'tha', 'THA.LOC104817246' => 'tha', 'THA.LOC104825895' => 'tha', 'Thecc.01G335200' => 'tca', 'Thecc.01G377400' => 'tca', 'Thecc.03G262200' => 'tca', 'Thecc.05G036800' => 'tca', 'Thecc.10G080500' => 'tca', 'Thecc.10G080800' => 'tca', 'Thhalv10001560m.g' => 'esa', 'Thhalv10006120m.g' => 'esa', 'Thhalv10014375m.g' => 'esa', 'Thhalv10021264m.g' => 'esa', 'Thhalv10028856m.g' => 'esa', 'TPR.G1914' => 'tpr', 'TPR.G4757' => 'tpr', 'TPR.G5595' => 'tpr', 'TWI14G0952' => 'twi', 'TWI14G1307' => 'twi', 'TWI38G2143' => 'twi', 'TWI59G0826' => 'twi', 'TWI77G0527' => 'twi', 'TWI81G0150' => 'twi', 'unitig_21.g21018' => 'ugi', 'unitig_26.g9725' => 'ugi', 'unitig_744.g24653' => 'ugi', 'unitig_749.g13778' => 'ugi', 'unitig_899.g15035' => 'ugi', 'vmacro04296' => 'vma', 'vmacro04852' => 'vma', 'vmacro13404' => 'vma', 'vmacro20169' => 'vma', 'vmacro21014' => 'vma', 'VMungo0331G0237' => 'vmu', 'VMungo0331G0706' => 'vmu', 'VMungo0331G1361' => 'vmu', 'VMungo0331G1489' => 'vmu', 'VMungo0540G1037' => 'vmu', 'VMungo0720G2487' => 'vmu', 'VMungo0720G2721' => 'vmu', 'Zm00001eb086860' => 'zma', 'Zm00001eb104760' => 'zma', 'Zm00001eb148220' => 'zma', 'Zm00001eb259030' => 'zma', 'Zm00001eb289590' => 'zma', 'Zm00001eb420150' => 'zma' ) $gf_id = 'HOM05D000968' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000968' ) $data_identifier = 'HOM05D000968' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 19, 'bol' => (int) 9, 'bra' => (int) 12, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 5, 'ccan' => (int) 7, 'cde' => (int) 5, 'cfa' => (int) 8, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 4, 'dca' => (int) 5, 'din' => (int) 5, 'dzi' => (int) 12, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 25, 'fve' => (int) 5, 'gma' => (int) 9, 'ghi' => (int) 18, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 7, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 5, 'sun' => (int) 2, 'lal' => (int) 9, 'lja' => (int) 5, 'lonja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 9, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 2, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 3, 'stu' => (int) 6, 'pvu' => (int) 4, 'ptr' => (int) 8, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 3, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 1, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 5, 'sas' => (int) 5, 'shi' => (int) 6, 'smo' => (int) 6, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 3, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420150' $species_info = array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ) $local_species = 'hma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000968', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p31690' => 'bna', 'A03p36040' => 'bna', 'A03p53730' => 'bna', 'A04p01410' => 'bna', 'A05p05420' => 'bna', 'A05p39630' => 'bna', 'A05p39640' => 'bna', 'A09p00970' => 'bna', 'A09p53060' => 'bna', 'A10p31890' => 'bna', 'Aa31LG10G15040' => 'aar', 'Aa31LG1G21090' => 'aar', 'Aa31LG1G26900' => 'aar', 'Aa31LG3G1820' => 'aar', 'Aa31LG5G1100' => 'aar', 'Aa31LG6G4740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2265' => 'aag', 'Actinidia07998' => 'ach', 'Actinidia11266' => 'ach', 'Actinidia12682' => 'ach', 'Actinidia26479' => 'ach', 'Actinidia31406' => 'ach', 'Actinidia32437' => 'ach', 'Actinidia38862' => 'ach', 'Ah.05g174230' => 'amhyb', 'Ah.05g179070' => 'amhyb', 'Ah.05g179090' => 'amhyb', 'Ah.12g059950' => 'amhyb', 'AL3G20480' => 'aly', 'AL4G44520' => 'aly', 'AL5G43110' => 'aly', 'AL6G13890' => 'aly', 'AL6G52620' => 'aly', 'AL7G30830' => 'aly', 'Aqoxy1G00899' => 'aox', 'Aqoxy5G04333' => 'aox', 'Aqoxy7G00641' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3IZ0NN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4EF6AW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W9P8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79GA3M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C43NQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFCU6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G95YVJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCHK29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LU1UG8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX91RN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGB4B1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8DA0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9H7JI' => 'arhy', 'AT3G09320' => 'ath', 'AT3G60800' => 'ath', 'AT4G00840' => 'ath', 'AT4G22750' => 'ath', 'AT5G04270' => 'ath', 'ATR0090G003' => 'atr', 'ATR0559G349' => 'atr', 'ATR0680G261' => 'atr', 'ATR0810G048' => 'atr', 'Atru.chr12.831' => 'acertr', 'Atru.chr5.303' => 'acertr', 'Atru.chr5.748' => 'acertr', 'Atru.chr8.1999' => 'acertr', 'Atru.chr9.1436' => 'acertr', 'AUR62004211' => 'cqu', 'AUR62004548' => 'cqu', 'AUR62013637' => 'cqu', 'AUR62022662' => 'cqu', 'AUR62025777' => 'cqu', 'AUR62042386' => 'cqu', 'BcaB01g02310' => 'bca', 'BcaB01g06062' => 'bca', 'BcaB02g08975' => 'bca', 'BcaB02g08980' => 'bca', 'BcaC01g04228' => 'bca', 'BcaC01g06830' => 'bca', 'BcaC02g10186' => 'bca', 'BcaC02g12214' => 'bca', 'BcaC04g24101' => 'bca', 'BcaC05g29520' => 'bca', 'BcaC05g29661' => 'bca', 'BcaC06g32130' => 'bca', 'BcaC06g32131' => 'bca', 'BcaC07g40601' => 'bca', 'BcaC07g42641' => 'bca', 'BcaNung01038' => 'bca', 'BcaNung01676' => 'bca', 'BcaNung02480' => 'bca', 'BcaNung07376' => 'bca', 'BolC3t16146H' => 'bol', 'BolC3t16637H' => 'bol', 'BolC4t22257H' => 'bol', 'BolC4t24728H' => 'bol', 'BolC5t34517H' => 'bol', 'BolC7t45703H' => 'bol', 'BolC8t51166H' => 'bol', 'BolC9t53038H' => 'bol', 'BolC9t60000H' => 'bol', 'BraA01t01345Z' => 'bra', 'BraA01t01346Z' => 'bra', 'BraA01t01348Z' => 'bra', 'BraA03t12347Z' => 'bra', 'BraA03t12775Z' => 'bra', 'BraA03t14439Z' => 'bra', 'BraA04t15860Z' => 'bra', 'BraA05t19511Z' => 'bra', 'BraA05t22746Z' => 'bra', 'BraA09t35767Z' => 'bra', 'BraA09t40732Z' => 'bra', 'BraA10t45233Z' => 'bra', 'C03p38720' => 'bna', 'C03p43680' => 'bna', 'C04p06350' => 'bna', 'C04p31800' => 'bna', 'C05p58680' => 'bna', 'C07p52110' => 'bna', 'C08p35760' => 'bna', 'C09p01050' => 'bna', 'C09p72600' => 'bna', 'CAN.G106.2' => 'can', 'CAN.G1482.1' => 'can', 'CAN.G324.12' => 'can', 'CAN.G388.20' => 'can', 'CAN.G412.7' => 'can', 'CAN.G694.32' => 'can', 'CAN.G92.12' => 'can', 'CANSAT11G2353' => 'cansat', 'CANSAT21G1398' => 'cansat', 'CANSAT56G2456' => 'cansat', 'CANSAT56G3031' => 'cansat', 'CANSAT56G4539' => 'cansat', 'CARHR083680' => 'chi', 'CARHR171190' => 'chi', 'CARHR209010' => 'chi', 'CARHR229680' => 'chi', 'CARHR249490' => 'chi', 'Carub.0003s0844' => 'cru', 'Carub.0005s2755' => 'cru', 'Carub.0006s0322' => 'cru', 'Carub.0006s3586' => 'cru', 'Carub.0007s1855' => 'cru', 'Ca_07808_v3' => 'car', 'Ca_09535_v3' => 'car', 'Ca_10548_v3' => 'car', 'Ca_19913_v3' => 'car', 'Ca_19916_v3' => 'car', 'Ca_19975_v3' => 'car', 'CBR_g22876' => 'cbr', 'CBR_g22879' => 'cbr', 'CBR_g38491' => 'cbr', 'CBR_g54185' => 'cbr', 'CBR_g54190' => 'cbr', 'Cc02_g11020' => 'ccan', 'Cc02_g23920' => 'ccan', 'Cc02_g39860' => 'ccan', 'Cc02_g39870' => 'ccan', 'Cc03_g06760' => 'ccan', 'Cc06_g02450' => 'ccan', 'Cc09_g09450' => 'ccan', 'CDE02G1959' => 'cde', 'CDE04G0600' => 'cde', 'CDE07G1996' => 'cde', 'CDE07G2078' => 'cde', 'CDE11G0611' => 'cde', 'Cfa001683' => 'cfa', 'Cfa001734' => 'cfa', 'Cfa001737' => 'cfa', 'Cfa003751' => 'cfa', 'Cfa012019' => 'cfa', 'Cfa017353' => 'cfa', 'Cfa017732' => 'cfa', 'Cfa022464' => 'cfa', 'Ciclev10012400m.g' => 'ccl', 'Ciclev10021242m.g' => 'ccl', 'Ciclev10021302m.g' => 'ccl', 'Ciclev10021463m.g' => 'ccl', 'Ciclev10032359m.g' => 'ccl', 'CiPaw.01G081000' => 'cil', 'CiPaw.01G262500' => 'cil', 'CiPaw.01G269800' => 'cil', 'CiPaw.02G168400' => 'cil', 'CiPaw.05G119500' => 'cil', 'CiPaw.11G147300' => 'cil', 'ClCG01G003630' => 'cla', 'ClCG05G000510' => 'cla', 'ClCG05G002300' => 'cla', 'ClCG08G007650' => 'cla', 'ClCG10G021250' => 'cla', 'COL.COLO4_06218' => 'col', 'COL.COLO4_12538' => 'col', 'COL.COLO4_14775' => 'col', 'COL.COLO4_23875' => 'col', 'Cpa.g.sc141.16' => 'cpa', 'Cpa.g.sc169.16' => 'cpa', 'Cpa.g.sc244.4' => 'cpa', 'Cpa.g.sc244.5' => 'cpa', 'Cpa.g.sc29.87' => 'cpa', 'Cpa.g.sc53.115' => 'cpa', 'Cre03.g207502' => 'cre', 'Cre06.g277000' => 'cre', 'Cre09.g394050' => 'cre', 'CsaV3_3G007680' => 'csa', 'CsaV3_3G009710' => 'csa', 'CsaV3_3G034790' => 'csa', 'CsaV3_5G003750' => 'csa', 'CsaV3_6G036620' => 'csa', 'CSS0002288' => 'camsi', 'CSS0011250' => 'camsi', 'CSS0021619' => 'camsi', 'CSS0046701' => 'camsi', 'DCAR_006420' => 'dca', 'DCAR_006865' => 'dca', 'DCAR_008558' => 'dca', 'DCAR_028754' => 'dca', 'DCAR_028755' => 'dca', 'Dinv31218' => 'din', 'Dinv32371' => 'din', 'Dinv34250' => 'din', 'Dinv37156' => 'din', 'Dinv43704' => 'din', 'Duzib093G1811' => 'dzi', 'Duzib106G1622' => 'dzi', 'Duzib114G0504' => 'dzi', 'Duzib128G0338' => 'dzi', 'Duzib128G1577' => 'dzi', 'Duzib133G0104' => 'dzi', 'Duzib133G1080' => 'dzi', 'Duzib138G0324' => 'dzi', 'Duzib138G0394' => 'dzi', 'Duzib205G0122' => 'dzi', 'Duzib268G1020' => 'dzi', 'Duzib268G1359' => 'dzi', 'ECA232G3929' => 'eca', 'ECA236G2210' => 'eca', 'ECA236G2287' => 'eca', 'ECA240G4568' => 'eca', 'ECA247G0894' => 'eca', 'EL10Ac1g00200' => 'bvu', 'EL10Ac1g00886' => 'bvu', 'EL10As1g23091' => 'bvu', 'EL10As1g23092' => 'bvu', 'Eucgr.A01284' => 'egr', 'Eucgr.A01285' => 'egr', 'Eucgr.D02456' => 'egr', 'Eucgr.E00018' => 'egr', 'Eucgr.E01439' => 'egr', 'Eucgr.G02859' => 'egr', 'FAN01G0168' => 'fan', 'FAN01G0453' => 'fan', 'FAN01G2761' => 'fan', 'FAN02G1239' => 'fan', 'FAN03G0645' => 'fan', 'FAN03G2707' => 'fan', 'FAN03G2978' => 'fan', 'FAN04G0227' => 'fan', 'FAN06G0091' => 'fan', 'FAN06G1418' => 'fan', 'FAN06G1512' => 'fan', 'FAN06G1986' => 'fan', 'FAN06G2905' => 'fan', 'FAN06G4325' => 'fan', 'FAN08G0033' => 'fan', 'FAN09G0642' => 'fan', 'FAN10G1763' => 'fan', 'FAN10G2026' => 'fan', 'FAN10G2513' => 'fan', 'FAN10G3402' => 'fan', 'FAN10G3564' => 'fan', 'FAN10G3987' => 'fan', 'FAN13G1490' => 'fan', 'FAN14G5857' => 'fan', 'FAN18G1188' => 'fan', 'FvH4_5g00750' => 'fve', 'FvH4_6g13410' => 'fve', 'FvH4_7g11740' => 'fve', 'FvH4_7g17410' => 'fve', 'FvH4_7g18860' => 'fve', 'Glyma.01G099100' => 'gma', 'Glyma.01G142300' => 'gma', 'Glyma.03G025500' => 'gma', 'Glyma.03G069700' => 'gma', 'Glyma.03G260000' => 'gma', 'Glyma.09G269800' => 'gma', 'Glyma.10G208700' => 'gma', 'Glyma.18G220400' => 'gma', 'Glyma.20G182000' => 'gma', 'Gohir.A01G221726' => 'ghi', 'Gohir.A07G134600' => 'ghi', 'Gohir.A07G146000' => 'ghi', 'Gohir.A08G173900' => 'ghi', 'Gohir.A09G194900' => 'ghi', 'Gohir.A10G204100' => 'ghi', 'Gohir.A11G080600' => 'ghi', 'Gohir.A11G327500' => 'ghi', 'Gohir.A12G101800' => 'ghi', 'Gohir.D01G211200' => 'ghi', 'Gohir.D07G139200' => 'ghi', 'Gohir.D07G152100' => 'ghi', 'Gohir.D08G192600' => 'ghi', 'Gohir.D09G189200' => 'ghi', 'Gohir.D10G212000' => 'ghi', 'Gohir.D11G085200' => 'ghi', 'Gohir.D11G346400' => 'ghi', 'Gohir.D12G104800' => 'ghi', 'Gorai.001G151300' => 'gra', 'Gorai.001G174100' => 'gra', 'Gorai.002G257000' => 'gra', 'Gorai.004G202600' => 'gra', 'Gorai.007G090900' => 'gra', 'Gorai.007G376700' => 'gra', 'Gorai.008G114100' => 'gra', 'Gorai.011G237900' => 'gra', 'GSVIVG01005450001' => 'vvi', 'GSVIVG01016232001' => 'vvi', 'GSVIVG01026157001' => 'vvi', 'GSVIVG01027419001' => 'vvi', 'GSVIVG01027631001' => 'vvi', 'GSVIVG01034143001' => 'vvi', 'HanXRQChr03g0093921' => 'han', 'HanXRQChr04g0120001' => 'han', 'HanXRQChr04g0122561' => 'han', 'HanXRQChr09g0246851' => 'han', 'HanXRQChr10g0293311' => 'han', 'HanXRQChr13g0425231' => 'han', 'HanXRQChr16g0532571' => 'han', 'Haze_09050' => 'cav', 'Haze_15715' => 'cav', 'Haze_15716' => 'cav', 'Haze_16803' => 'cav', 'Haze_16850' => 'cav', 'Hma1.2p1_0301F.1_g118655' => 'hma', 'Hma1.2p1_0309F.1_g120590' => 'hma', 'Hma1.2p1_0936F.1_g238900' => 'hma', 'Hma1.2p1_3552F.1_g336740' => 'hma', 'HPP92_003520' => 'vpl', 'HPP92_006628' => 'vpl', 'HPP92_006645' => 'vpl', 'HPP92_014669' => 'vpl', 'HPP92_015077' => 'vpl', 'Hund16742' => 'sun', 'Hund17022' => 'sun', 'Lalb_Chr02g0152131' => 'lal', 'Lalb_Chr05g0225371' => 'lal', 'Lalb_Chr07g0189841' => 'lal', 'Lalb_Chr07g0192961' => 'lal', 'Lalb_Chr12g0208221' => 'lal', 'Lalb_Chr13g0291211' => 'lal', 'Lalb_Chr13g0291781' => 'lal', 'Lalb_Chr18g0044651' => 'lal', 'Lalb_Chr21g0313731' => 'lal', 'Lj1g0022533' => 'lja', 'Lj2A18T50' => 'lonja', 'Lj2A92G93' => 'lonja', 'Lj3A965T73' => 'lonja', 'Lj3g0000673' => 'lja', 'Lj3g0002666' => 'lja', 'Lj4g0016985' => 'lja', 'Lj5g0003625' => 'lja', 'Lj7A529G36' => 'lonja', 'Lj9A569T49' => 'lonja', 'Lj9A604T63' => 'lonja', 'Lsat_1_v5_gn_3_132060' => 'lsa', 'Lsat_1_v5_gn_4_68941' => 'lsa', 'Lsat_1_v5_gn_5_95580' => 'lsa', 'Lsat_1_v5_gn_7_161' => 'lsa', 'Lsat_1_v5_gn_7_7041' => 'lsa', 'Lsat_1_v5_gn_9_33481' => 'lsa', 'Lsat_1_v5_gn_9_68260' => 'lsa', 'Manes.01G073100' => 'mes', 'Manes.01G266300' => 'mes', 'Manes.02G033300' => 'mes', 'Manes.05G017900' => 'mes', 'Manes.05G046100' => 'mes', 'Manes.08G080900' => 'mes', 'Manes.10G049400' => 'mes', 'Mapoly0009s0186' => 'mpo', 'Mapoly0036s0118' => 'mpo', 'Mapoly0101s0046' => 'mpo', 'MBI04_g30218_MAGBIO' => 'mbi', 'MBI04_g35564_MAGBIO' => 'mbi', 'MBI12_g34011_MAGBIO' => 'mbi', 'MBI14_g04655_MAGBIO' => 'mbi', 'MCO07G653' => 'mco', 'MCO10G173' => 'mco', 'MD01G1087100' => 'mdo', 'MD01G1104200' => 'mdo', 'MD02G1205100' => 'mdo', 'MD04G1079200' => 'mdo', 'MD04G1131400' => 'mdo', 'MD07G1121600' => 'mdo', 'MD07G1157300' => 'mdo', 'MD07G1171000' => 'mdo', 'MD12G1144500' => 'mdo', 'Medtr1g094610' => 'mtr', 'Medtr4g021795' => 'mtr', 'Medtr4g023760' => 'mtr', 'Medtr7g118050' => 'mtr', 'MELO3C005582.2' => 'cme', 'MELO3C005989.2' => 'cme', 'MELO3C006192.2' => 'cme', 'MELO3C009248.2' => 'cme', 'MELO3C019817.2' => 'cme', 'Migut.B01625' => 'egut', 'Migut.B01915' => 'egut', 'Migut.F01721' => 'egut', 'Migut.J00314' => 'egut', 'MSTRG.20742' => 'ama', 'MSTRG.8134' => 'ama', 'Nitab4.5_0000096g0010' => 'nta', 'Nitab4.5_0000202g0030' => 'nta', 'Nitab4.5_0000216g0370' => 'nta', 'Nitab4.5_0000457g0230' => 'nta', 'Nitab4.5_0001702g0170' => 'nta', 'Nitab4.5_0003607g0010' => 'nta', 'Nitab4.5_0004917g0020' => 'nta', 'Nitab4.5_0007059g0010' => 'nta', 'Nitab4.5_0007184g0010' => 'nta', 'Nitab4.5_0007346g0020' => 'nta', 'Nn1g00410' => 'nnu', 'Nn1g01252' => 'nnu', 'Nn2g11168' => 'nnu', 'Nn2g13403' => 'nnu', 'Nn2g13760' => 'nnu', 'Nn4g26380' => 'nnu', 'Oeu000806.2' => 'oeu', 'Oeu005788.1' => 'oeu', 'Oeu006900.3' => 'oeu', 'Oeu007797.1' => 'oeu', 'Oeu011932.1' => 'oeu', 'Oeu022739.1' => 'oeu', 'Oeu037918.1' => 'oeu', 'Oeu055490.2' => 'oeu', 'Os01g0844400' => 'osa', 'Os02g0819100' => 'osa', 'Os03g0804300' => 'osa', 'Os05g0458000' => 'osa', 'Os07g0467800' => 'osa', 'Os12g0602200' => 'osa', 'Peaxi162Scf00013g03444' => 'pax', 'Peaxi162Scf00094g01120' => 'pax', 'Peaxi162Scf00191g01211' => 'pax', 'Peaxi162Scf00238g01110' => 'pax', 'Peaxi162Scf00330g00719' => 'pax', 'Peaxi162Scf00627g00018' => 'pax', 'PGR031G2686' => 'pgr', 'PGR042G0809' => 'pgr', 'PGR142G0193' => 'pgr', 'PGSC0003DMG400011066' => 'stu', 'PGSC0003DMG400012041' => 'stu', 'PGSC0003DMG400013678' => 'stu', 'PGSC0003DMG400023477' => 'stu', 'PGSC0003DMG400025956' => 'stu', 'PGSC0003DMG401019151' => 'stu', 'Phvul.006G116400' => 'pvu', 'Phvul.007G097300' => 'pvu', 'Phvul.010G015000' => 'pvu', 'Phvul.010G083900' => 'pvu', 'Potri.001G117100' => 'ptr', 'Potri.002G147300' => 'ptr', 'Potri.003G115600' => 'ptr', 'Potri.006G087400' => 'ptr', 'Potri.010G226100' => 'ptr', 'Potri.014G069200' => 'ptr', 'Potri.014G104000' => 'ptr', 'Potri.016G100200' => 'ptr', 'Pp3c10_20450' => 'ppa', 'Pp3c1_42400' => 'ppa', 'Pp3c3_24390' => 'ppa', 'Pp3c3_2860' => 'ppa', 'PRCOL_00003193' => 'pco', 'Prupe.2G144500' => 'ppe', 'Prupe.2G195700' => 'ppe', 'Prupe.2G209800' => 'ppe', 'Prupe.5G080000' => 'ppe', 'Prupe.6G257900' => 'ppe', 'Psat3g001160' => 'psa', 'Psat6g181880' => 'psa', 'Psat7g233720' => 'psa', 'PSO063G7587' => 'pso', 'PSO339G2145' => 'pso', 'PSO339G3369' => 'pso', 'PSO478G2747' => 'pso', 'PSO513G0140' => 'pso', 'PSO782G1614' => 'pso', 'PSO782G4889' => 'pso', 'PSO782G5485' => 'pso', 'PSO801G0241' => 'pso', 'QL07p048854' => 'qlo', 'QL08p046745' => 'qlo', 'QL08p052606' => 'qlo', 'QL08p053414' => 'qlo', 'QL08p054868' => 'qlo', 'RcHm_v2.0_Chr1g0350251' => 'rch', 'RcHm_v2.0_Chr1g0360851' => 'rch', 'RcHm_v2.0_Chr1g0362791' => 'rch', 'RcHm_v2.0_Chr3g0466281' => 'rch', 'RcHm_v2.0_Chr7g0201481' => 'rch', 'Rhsim01G0148600' => 'rsi', 'Rhsim05G0194400' => 'rsi', 'Rhsim07G0000700' => 'rsi', 'Rhsim07G0000800' => 'rsi', 'Rhsim07G0027900' => 'rsi', 'Rhsim09G0149500' => 'rsi', 'RhsimUnG0186900' => 'rsi', 'Sabra01G0089900' => 'sbr', 'Sabra02G0114700' => 'sbr', 'Sabra02G0116300' => 'sbr', 'Sabra03G0080100' => 'sbr', 'Sabra08G0024300' => 'sbr', 'Sabra10G0174300' => 'sbr', 'Sabra14G0048900' => 'sbr', 'Sabra14G0076500' => 'sbr', 'SalBow5G2513' => 'sbo', 'Sc01g0002300' => 'sci', 'Sc01g0004450' => 'sci', 'Sc06g0001680' => 'sci', 'Sc23g0003580' => 'sci', 'Sed0000913' => 'sed', 'Sed0001655' => 'sed', 'Sed0007745' => 'sed', 'Sed0010951' => 'sed', 'Sed0017599' => 'sed', 'Sed0021405' => 'sed', 'Sed0022810' => 'sed', 'SEGI_07099' => 'sgi', 'SEGI_11931' => 'sgi', 'SEGI_13187' => 'sgi', 'SEGI_29958' => 'sgi', 'SEGI_36351' => 'sgi', 'SGA_v2.0_scaffold126G33770' => 'sas', 'SGA_v2.0_scaffold153G37003' => 'sas', 'SGA_v2.0_scaffold2G01359' => 'sas', 'SGA_v2.0_scaffold5G03064' => 'sas', 'SGA_v2.0_scaffold95G28903' => 'sas', 'SHI12701' => 'shi', 'SHI26410' => 'shi', 'SHI38997' => 'shi', 'SHI53759' => 'shi', 'SHI53886' => 'shi', 'SHI54714' => 'shi', 'SMO011G0041' => 'smo', 'SMO146G0251' => 'smo', 'SMO160G0004' => 'smo', 'SMO174G0057' => 'smo', 'SMO244G0089' => 'smo', 'SMO296G0011' => 'smo', 'Solyc01g091280.3' => 'sly', 'Solyc05g047610.3' => 'sly', 'Solyc05g047640.3' => 'sly', 'Solyc05g055630.3' => 'sly', 'Solyc10g018160.2' => 'sly', 'Solyc10g084820.2' => 'sly', 'Solyc10g086565.2' => 'sly', 'Sopen01g037030' => 'spe', 'Sopen05g027920' => 'spe', 'Sopen05g034070' => 'spe', 'Sopen10g007260' => 'spe', 'Sopen10g034260' => 'spe', 'Sopen10g035950' => 'spe', 'Sp3g07710' => 'spa', 'Sp4g27420' => 'spa', 'Sp5g02450' => 'spa', 'Sp6g01280' => 'spa', 'Sp6g38480' => 'spa', 'Sp7g20780' => 'spa', 'TAR374G1413' => 'tar', 'TAR623G1777' => 'tar', 'TAR629G2370' => 'tar', 'TAR633G1759' => 'tar', 'TAR636G3387' => 'tar', 'THA.LOC104802447' => 'tha', 'THA.LOC104813916' => 'tha', 'THA.LOC104816423' => 'tha', 'THA.LOC104817246' => 'tha', 'THA.LOC104825895' => 'tha', 'Thecc.01G335200' => 'tca', 'Thecc.01G377400' => 'tca', 'Thecc.03G262200' => 'tca', 'Thecc.05G036800' => 'tca', 'Thecc.10G080500' => 'tca', 'Thecc.10G080800' => 'tca', 'Thhalv10001560m.g' => 'esa', 'Thhalv10006120m.g' => 'esa', 'Thhalv10014375m.g' => 'esa', 'Thhalv10021264m.g' => 'esa', 'Thhalv10028856m.g' => 'esa', 'TPR.G1914' => 'tpr', 'TPR.G4757' => 'tpr', 'TPR.G5595' => 'tpr', 'TWI14G0952' => 'twi', 'TWI14G1307' => 'twi', 'TWI38G2143' => 'twi', 'TWI59G0826' => 'twi', 'TWI77G0527' => 'twi', 'TWI81G0150' => 'twi', 'unitig_21.g21018' => 'ugi', 'unitig_26.g9725' => 'ugi', 'unitig_744.g24653' => 'ugi', 'unitig_749.g13778' => 'ugi', 'unitig_899.g15035' => 'ugi', 'vmacro04296' => 'vma', 'vmacro04852' => 'vma', 'vmacro13404' => 'vma', 'vmacro20169' => 'vma', 'vmacro21014' => 'vma', 'VMungo0331G0237' => 'vmu', 'VMungo0331G0706' => 'vmu', 'VMungo0331G1361' => 'vmu', 'VMungo0331G1489' => 'vmu', 'VMungo0540G1037' => 'vmu', 'VMungo0720G2487' => 'vmu', 'VMungo0720G2721' => 'vmu', 'Zm00001eb086860' => 'zma', 'Zm00001eb104760' => 'zma', 'Zm00001eb148220' => 'zma', 'Zm00001eb259030' => 'zma', 'Zm00001eb289590' => 'zma', 'Zm00001eb420150' => 'zma' ), 'gf_id' => 'HOM05D000968', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000968' ), 'data_identifier' => 'HOM05D000968', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000968', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p31690' => 'bna', 'A03p36040' => 'bna', 'A03p53730' => 'bna', 'A04p01410' => 'bna', 'A05p05420' => 'bna', 'A05p39630' => 'bna', 'A05p39640' => 'bna', 'A09p00970' => 'bna', 'A09p53060' => 'bna', 'A10p31890' => 'bna', 'Aa31LG10G15040' => 'aar', 'Aa31LG1G21090' => 'aar', 'Aa31LG1G26900' => 'aar', 'Aa31LG3G1820' => 'aar', 'Aa31LG5G1100' => 'aar', 'Aa31LG6G4740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2265' => 'aag', 'Actinidia07998' => 'ach', 'Actinidia11266' => 'ach', 'Actinidia12682' => 'ach', 'Actinidia26479' => 'ach', 'Actinidia31406' => 'ach', 'Actinidia32437' => 'ach', 'Actinidia38862' => 'ach', 'Ah.05g174230' => 'amhyb', 'Ah.05g179070' => 'amhyb', 'Ah.05g179090' => 'amhyb', 'Ah.12g059950' => 'amhyb', 'AL3G20480' => 'aly', 'AL4G44520' => 'aly', 'AL5G43110' => 'aly', 'AL6G13890' => 'aly', 'AL6G52620' => 'aly', 'AL7G30830' => 'aly', 'Aqoxy1G00899' => 'aox', 'Aqoxy5G04333' => 'aox', 'Aqoxy7G00641' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3IZ0NN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4EF6AW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W9P8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79GA3M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C43NQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFCU6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G95YVJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCHK29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LU1UG8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX91RN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGB4B1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8DA0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9H7JI' => 'arhy', 'AT3G09320' => 'ath', 'AT3G60800' => 'ath', 'AT4G00840' => 'ath', 'AT4G22750' => 'ath', 'AT5G04270' => 'ath', 'ATR0090G003' => 'atr', 'ATR0559G349' => 'atr', 'ATR0680G261' => 'atr', 'ATR0810G048' => 'atr', 'Atru.chr12.831' => 'acertr', 'Atru.chr5.303' => 'acertr', 'Atru.chr5.748' => 'acertr', 'Atru.chr8.1999' => 'acertr', 'Atru.chr9.1436' => 'acertr', 'AUR62004211' => 'cqu', 'AUR62004548' => 'cqu', 'AUR62013637' => 'cqu', 'AUR62022662' => 'cqu', 'AUR62025777' => 'cqu', 'AUR62042386' => 'cqu', 'BcaB01g02310' => 'bca', 'BcaB01g06062' => 'bca', 'BcaB02g08975' => 'bca', 'BcaB02g08980' => 'bca', 'BcaC01g04228' => 'bca', 'BcaC01g06830' => 'bca', 'BcaC02g10186' => 'bca', 'BcaC02g12214' => 'bca', 'BcaC04g24101' => 'bca', 'BcaC05g29520' => 'bca', 'BcaC05g29661' => 'bca', 'BcaC06g32130' => 'bca', 'BcaC06g32131' => 'bca', 'BcaC07g40601' => 'bca', 'BcaC07g42641' => 'bca', 'BcaNung01038' => 'bca', 'BcaNung01676' => 'bca', 'BcaNung02480' => 'bca', 'BcaNung07376' => 'bca', 'BolC3t16146H' => 'bol', 'BolC3t16637H' => 'bol', 'BolC4t22257H' => 'bol', 'BolC4t24728H' => 'bol', 'BolC5t34517H' => 'bol', 'BolC7t45703H' => 'bol', 'BolC8t51166H' => 'bol', 'BolC9t53038H' => 'bol', 'BolC9t60000H' => 'bol', 'BraA01t01345Z' => 'bra', 'BraA01t01346Z' => 'bra', 'BraA01t01348Z' => 'bra', 'BraA03t12347Z' => 'bra', 'BraA03t12775Z' => 'bra', 'BraA03t14439Z' => 'bra', 'BraA04t15860Z' => 'bra', 'BraA05t19511Z' => 'bra', 'BraA05t22746Z' => 'bra', 'BraA09t35767Z' => 'bra', 'BraA09t40732Z' => 'bra', 'BraA10t45233Z' => 'bra', 'C03p38720' => 'bna', 'C03p43680' => 'bna', 'C04p06350' => 'bna', 'C04p31800' => 'bna', 'C05p58680' => 'bna', 'C07p52110' => 'bna', 'C08p35760' => 'bna', 'C09p01050' => 'bna', 'C09p72600' => 'bna', 'CAN.G106.2' => 'can', 'CAN.G1482.1' => 'can', 'CAN.G324.12' => 'can', 'CAN.G388.20' => 'can', 'CAN.G412.7' => 'can', 'CAN.G694.32' => 'can', 'CAN.G92.12' => 'can', 'CANSAT11G2353' => 'cansat', 'CANSAT21G1398' => 'cansat', 'CANSAT56G2456' => 'cansat', 'CANSAT56G3031' => 'cansat', 'CANSAT56G4539' => 'cansat', 'CARHR083680' => 'chi', 'CARHR171190' => 'chi', 'CARHR209010' => 'chi', 'CARHR229680' => 'chi', 'CARHR249490' => 'chi', 'Carub.0003s0844' => 'cru', 'Carub.0005s2755' => 'cru', 'Carub.0006s0322' => 'cru', 'Carub.0006s3586' => 'cru', 'Carub.0007s1855' => 'cru', 'Ca_07808_v3' => 'car', 'Ca_09535_v3' => 'car', 'Ca_10548_v3' => 'car', 'Ca_19913_v3' => 'car', 'Ca_19916_v3' => 'car', 'Ca_19975_v3' => 'car', 'CBR_g22876' => 'cbr', 'CBR_g22879' => 'cbr', 'CBR_g38491' => 'cbr', 'CBR_g54185' => 'cbr', 'CBR_g54190' => 'cbr', 'Cc02_g11020' => 'ccan', 'Cc02_g23920' => 'ccan', 'Cc02_g39860' => 'ccan', 'Cc02_g39870' => 'ccan', 'Cc03_g06760' => 'ccan', 'Cc06_g02450' => 'ccan', 'Cc09_g09450' => 'ccan', 'CDE02G1959' => 'cde', 'CDE04G0600' => 'cde', 'CDE07G1996' => 'cde', 'CDE07G2078' => 'cde', 'CDE11G0611' => 'cde', 'Cfa001683' => 'cfa', 'Cfa001734' => 'cfa', 'Cfa001737' => 'cfa', 'Cfa003751' => 'cfa', 'Cfa012019' => 'cfa', 'Cfa017353' => 'cfa', 'Cfa017732' => 'cfa', 'Cfa022464' => 'cfa', 'Ciclev10012400m.g' => 'ccl', 'Ciclev10021242m.g' => 'ccl', 'Ciclev10021302m.g' => 'ccl', 'Ciclev10021463m.g' => 'ccl', 'Ciclev10032359m.g' => 'ccl', 'CiPaw.01G081000' => 'cil', 'CiPaw.01G262500' => 'cil', 'CiPaw.01G269800' => 'cil', 'CiPaw.02G168400' => 'cil', 'CiPaw.05G119500' => 'cil', 'CiPaw.11G147300' => 'cil', 'ClCG01G003630' => 'cla', 'ClCG05G000510' => 'cla', 'ClCG05G002300' => 'cla', 'ClCG08G007650' => 'cla', 'ClCG10G021250' => 'cla', 'COL.COLO4_06218' => 'col', 'COL.COLO4_12538' => 'col', 'COL.COLO4_14775' => 'col', 'COL.COLO4_23875' => 'col', 'Cpa.g.sc141.16' => 'cpa', 'Cpa.g.sc169.16' => 'cpa', 'Cpa.g.sc244.4' => 'cpa', 'Cpa.g.sc244.5' => 'cpa', 'Cpa.g.sc29.87' => 'cpa', 'Cpa.g.sc53.115' => 'cpa', 'Cre03.g207502' => 'cre', 'Cre06.g277000' => 'cre', 'Cre09.g394050' => 'cre', 'CsaV3_3G007680' => 'csa', 'CsaV3_3G009710' => 'csa', 'CsaV3_3G034790' => 'csa', 'CsaV3_5G003750' => 'csa', 'CsaV3_6G036620' => 'csa', 'CSS0002288' => 'camsi', 'CSS0011250' => 'camsi', 'CSS0021619' => 'camsi', 'CSS0046701' => 'camsi', 'DCAR_006420' => 'dca', 'DCAR_006865' => 'dca', 'DCAR_008558' => 'dca', 'DCAR_028754' => 'dca', 'DCAR_028755' => 'dca', 'Dinv31218' => 'din', 'Dinv32371' => 'din', 'Dinv34250' => 'din', 'Dinv37156' => 'din', 'Dinv43704' => 'din', 'Duzib093G1811' => 'dzi', 'Duzib106G1622' => 'dzi', 'Duzib114G0504' => 'dzi', 'Duzib128G0338' => 'dzi', 'Duzib128G1577' => 'dzi', 'Duzib133G0104' => 'dzi', 'Duzib133G1080' => 'dzi', 'Duzib138G0324' => 'dzi', 'Duzib138G0394' => 'dzi', 'Duzib205G0122' => 'dzi', 'Duzib268G1020' => 'dzi', 'Duzib268G1359' => 'dzi', 'ECA232G3929' => 'eca', 'ECA236G2210' => 'eca', 'ECA236G2287' => 'eca', 'ECA240G4568' => 'eca', 'ECA247G0894' => 'eca', 'EL10Ac1g00200' => 'bvu', 'EL10Ac1g00886' => 'bvu', 'EL10As1g23091' => 'bvu', 'EL10As1g23092' => 'bvu', 'Eucgr.A01284' => 'egr', 'Eucgr.A01285' => 'egr', 'Eucgr.D02456' => 'egr', 'Eucgr.E00018' => 'egr', 'Eucgr.E01439' => 'egr', 'Eucgr.G02859' => 'egr', 'FAN01G0168' => 'fan', 'FAN01G0453' => 'fan', 'FAN01G2761' => 'fan', 'FAN02G1239' => 'fan', 'FAN03G0645' => 'fan', 'FAN03G2707' => 'fan', 'FAN03G2978' => 'fan', 'FAN04G0227' => 'fan', 'FAN06G0091' => 'fan', 'FAN06G1418' => 'fan', 'FAN06G1512' => 'fan', 'FAN06G1986' => 'fan', 'FAN06G2905' => 'fan', 'FAN06G4325' => 'fan', 'FAN08G0033' => 'fan', 'FAN09G0642' => 'fan', 'FAN10G1763' => 'fan', 'FAN10G2026' => 'fan', 'FAN10G2513' => 'fan', 'FAN10G3402' => 'fan', 'FAN10G3564' => 'fan', 'FAN10G3987' => 'fan', 'FAN13G1490' => 'fan', 'FAN14G5857' => 'fan', 'FAN18G1188' => 'fan', 'FvH4_5g00750' => 'fve', 'FvH4_6g13410' => 'fve', 'FvH4_7g11740' => 'fve', 'FvH4_7g17410' => 'fve', 'FvH4_7g18860' => 'fve', 'Glyma.01G099100' => 'gma', 'Glyma.01G142300' => 'gma', 'Glyma.03G025500' => 'gma', 'Glyma.03G069700' => 'gma', 'Glyma.03G260000' => 'gma', 'Glyma.09G269800' => 'gma', 'Glyma.10G208700' => 'gma', 'Glyma.18G220400' => 'gma', 'Glyma.20G182000' => 'gma', 'Gohir.A01G221726' => 'ghi', 'Gohir.A07G134600' => 'ghi', 'Gohir.A07G146000' => 'ghi', 'Gohir.A08G173900' => 'ghi', 'Gohir.A09G194900' => 'ghi', 'Gohir.A10G204100' => 'ghi', 'Gohir.A11G080600' => 'ghi', 'Gohir.A11G327500' => 'ghi', 'Gohir.A12G101800' => 'ghi', 'Gohir.D01G211200' => 'ghi', 'Gohir.D07G139200' => 'ghi', 'Gohir.D07G152100' => 'ghi', 'Gohir.D08G192600' => 'ghi', 'Gohir.D09G189200' => 'ghi', 'Gohir.D10G212000' => 'ghi', 'Gohir.D11G085200' => 'ghi', 'Gohir.D11G346400' => 'ghi', 'Gohir.D12G104800' => 'ghi', 'Gorai.001G151300' => 'gra', 'Gorai.001G174100' => 'gra', 'Gorai.002G257000' => 'gra', 'Gorai.004G202600' => 'gra', 'Gorai.007G090900' => 'gra', 'Gorai.007G376700' => 'gra', 'Gorai.008G114100' => 'gra', 'Gorai.011G237900' => 'gra', 'GSVIVG01005450001' => 'vvi', 'GSVIVG01016232001' => 'vvi', 'GSVIVG01026157001' => 'vvi', 'GSVIVG01027419001' => 'vvi', 'GSVIVG01027631001' => 'vvi', 'GSVIVG01034143001' => 'vvi', 'HanXRQChr03g0093921' => 'han', 'HanXRQChr04g0120001' => 'han', 'HanXRQChr04g0122561' => 'han', 'HanXRQChr09g0246851' => 'han', 'HanXRQChr10g0293311' => 'han', 'HanXRQChr13g0425231' => 'han', 'HanXRQChr16g0532571' => 'han', 'Haze_09050' => 'cav', 'Haze_15715' => 'cav', 'Haze_15716' => 'cav', 'Haze_16803' => 'cav', 'Haze_16850' => 'cav', 'Hma1.2p1_0301F.1_g118655' => 'hma', 'Hma1.2p1_0309F.1_g120590' => 'hma', 'Hma1.2p1_0936F.1_g238900' => 'hma', 'Hma1.2p1_3552F.1_g336740' => 'hma', 'HPP92_003520' => 'vpl', 'HPP92_006628' => 'vpl', 'HPP92_006645' => 'vpl', 'HPP92_014669' => 'vpl', 'HPP92_015077' => 'vpl', 'Hund16742' => 'sun', 'Hund17022' => 'sun', 'Lalb_Chr02g0152131' => 'lal', 'Lalb_Chr05g0225371' => 'lal', 'Lalb_Chr07g0189841' => 'lal', 'Lalb_Chr07g0192961' => 'lal', 'Lalb_Chr12g0208221' => 'lal', 'Lalb_Chr13g0291211' => 'lal', 'Lalb_Chr13g0291781' => 'lal', 'Lalb_Chr18g0044651' => 'lal', 'Lalb_Chr21g0313731' => 'lal', 'Lj1g0022533' => 'lja', 'Lj2A18T50' => 'lonja', 'Lj2A92G93' => 'lonja', 'Lj3A965T73' => 'lonja', 'Lj3g0000673' => 'lja', 'Lj3g0002666' => 'lja', 'Lj4g0016985' => 'lja', 'Lj5g0003625' => 'lja', 'Lj7A529G36' => 'lonja', 'Lj9A569T49' => 'lonja', 'Lj9A604T63' => 'lonja', 'Lsat_1_v5_gn_3_132060' => 'lsa', 'Lsat_1_v5_gn_4_68941' => 'lsa', 'Lsat_1_v5_gn_5_95580' => 'lsa', 'Lsat_1_v5_gn_7_161' => 'lsa', 'Lsat_1_v5_gn_7_7041' => 'lsa', 'Lsat_1_v5_gn_9_33481' => 'lsa', 'Lsat_1_v5_gn_9_68260' => 'lsa', 'Manes.01G073100' => 'mes', 'Manes.01G266300' => 'mes', 'Manes.02G033300' => 'mes', 'Manes.05G017900' => 'mes', 'Manes.05G046100' => 'mes', 'Manes.08G080900' => 'mes', 'Manes.10G049400' => 'mes', 'Mapoly0009s0186' => 'mpo', 'Mapoly0036s0118' => 'mpo', 'Mapoly0101s0046' => 'mpo', 'MBI04_g30218_MAGBIO' => 'mbi', 'MBI04_g35564_MAGBIO' => 'mbi', 'MBI12_g34011_MAGBIO' => 'mbi', 'MBI14_g04655_MAGBIO' => 'mbi', 'MCO07G653' => 'mco', 'MCO10G173' => 'mco', 'MD01G1087100' => 'mdo', 'MD01G1104200' => 'mdo', 'MD02G1205100' => 'mdo', 'MD04G1079200' => 'mdo', 'MD04G1131400' => 'mdo', 'MD07G1121600' => 'mdo', 'MD07G1157300' => 'mdo', 'MD07G1171000' => 'mdo', 'MD12G1144500' => 'mdo', 'Medtr1g094610' => 'mtr', 'Medtr4g021795' => 'mtr', 'Medtr4g023760' => 'mtr', 'Medtr7g118050' => 'mtr', 'MELO3C005582.2' => 'cme', 'MELO3C005989.2' => 'cme', 'MELO3C006192.2' => 'cme', 'MELO3C009248.2' => 'cme', 'MELO3C019817.2' => 'cme', 'Migut.B01625' => 'egut', 'Migut.B01915' => 'egut', 'Migut.F01721' => 'egut', 'Migut.J00314' => 'egut', 'MSTRG.20742' => 'ama', 'MSTRG.8134' => 'ama', 'Nitab4.5_0000096g0010' => 'nta', 'Nitab4.5_0000202g0030' => 'nta', 'Nitab4.5_0000216g0370' => 'nta', 'Nitab4.5_0000457g0230' => 'nta', 'Nitab4.5_0001702g0170' => 'nta', 'Nitab4.5_0003607g0010' => 'nta', 'Nitab4.5_0004917g0020' => 'nta', 'Nitab4.5_0007059g0010' => 'nta', 'Nitab4.5_0007184g0010' => 'nta', 'Nitab4.5_0007346g0020' => 'nta', 'Nn1g00410' => 'nnu', 'Nn1g01252' => 'nnu', 'Nn2g11168' => 'nnu', 'Nn2g13403' => 'nnu', 'Nn2g13760' => 'nnu', 'Nn4g26380' => 'nnu', 'Oeu000806.2' => 'oeu', 'Oeu005788.1' => 'oeu', 'Oeu006900.3' => 'oeu', 'Oeu007797.1' => 'oeu', 'Oeu011932.1' => 'oeu', 'Oeu022739.1' => 'oeu', 'Oeu037918.1' => 'oeu', 'Oeu055490.2' => 'oeu', 'Os01g0844400' => 'osa', 'Os02g0819100' => 'osa', 'Os03g0804300' => 'osa', 'Os05g0458000' => 'osa', 'Os07g0467800' => 'osa', 'Os12g0602200' => 'osa', 'Peaxi162Scf00013g03444' => 'pax', 'Peaxi162Scf00094g01120' => 'pax', 'Peaxi162Scf00191g01211' => 'pax', 'Peaxi162Scf00238g01110' => 'pax', 'Peaxi162Scf00330g00719' => 'pax', 'Peaxi162Scf00627g00018' => 'pax', 'PGR031G2686' => 'pgr', 'PGR042G0809' => 'pgr', 'PGR142G0193' => 'pgr', 'PGSC0003DMG400011066' => 'stu', 'PGSC0003DMG400012041' => 'stu', 'PGSC0003DMG400013678' => 'stu', 'PGSC0003DMG400023477' => 'stu', 'PGSC0003DMG400025956' => 'stu', 'PGSC0003DMG401019151' => 'stu', 'Phvul.006G116400' => 'pvu', 'Phvul.007G097300' => 'pvu', 'Phvul.010G015000' => 'pvu', 'Phvul.010G083900' => 'pvu', 'Potri.001G117100' => 'ptr', 'Potri.002G147300' => 'ptr', 'Potri.003G115600' => 'ptr', 'Potri.006G087400' => 'ptr', 'Potri.010G226100' => 'ptr', 'Potri.014G069200' => 'ptr', 'Potri.014G104000' => 'ptr', 'Potri.016G100200' => 'ptr', 'Pp3c10_20450' => 'ppa', 'Pp3c1_42400' => 'ppa', 'Pp3c3_24390' => 'ppa', 'Pp3c3_2860' => 'ppa', 'PRCOL_00003193' => 'pco', 'Prupe.2G144500' => 'ppe', 'Prupe.2G195700' => 'ppe', 'Prupe.2G209800' => 'ppe', 'Prupe.5G080000' => 'ppe', 'Prupe.6G257900' => 'ppe', 'Psat3g001160' => 'psa', 'Psat6g181880' => 'psa', 'Psat7g233720' => 'psa', 'PSO063G7587' => 'pso', 'PSO339G2145' => 'pso', 'PSO339G3369' => 'pso', 'PSO478G2747' => 'pso', 'PSO513G0140' => 'pso', 'PSO782G1614' => 'pso', 'PSO782G4889' => 'pso', 'PSO782G5485' => 'pso', 'PSO801G0241' => 'pso', 'QL07p048854' => 'qlo', 'QL08p046745' => 'qlo', 'QL08p052606' => 'qlo', 'QL08p053414' => 'qlo', 'QL08p054868' => 'qlo', 'RcHm_v2.0_Chr1g0350251' => 'rch', 'RcHm_v2.0_Chr1g0360851' => 'rch', 'RcHm_v2.0_Chr1g0362791' => 'rch', 'RcHm_v2.0_Chr3g0466281' => 'rch', 'RcHm_v2.0_Chr7g0201481' => 'rch', 'Rhsim01G0148600' => 'rsi', 'Rhsim05G0194400' => 'rsi', 'Rhsim07G0000700' => 'rsi', 'Rhsim07G0000800' => 'rsi', 'Rhsim07G0027900' => 'rsi', 'Rhsim09G0149500' => 'rsi', 'RhsimUnG0186900' => 'rsi', 'Sabra01G0089900' => 'sbr', 'Sabra02G0114700' => 'sbr', 'Sabra02G0116300' => 'sbr', 'Sabra03G0080100' => 'sbr', 'Sabra08G0024300' => 'sbr', 'Sabra10G0174300' => 'sbr', 'Sabra14G0048900' => 'sbr', 'Sabra14G0076500' => 'sbr', 'SalBow5G2513' => 'sbo', 'Sc01g0002300' => 'sci', 'Sc01g0004450' => 'sci', 'Sc06g0001680' => 'sci', 'Sc23g0003580' => 'sci', 'Sed0000913' => 'sed', 'Sed0001655' => 'sed', 'Sed0007745' => 'sed', 'Sed0010951' => 'sed', 'Sed0017599' => 'sed', 'Sed0021405' => 'sed', 'Sed0022810' => 'sed', 'SEGI_07099' => 'sgi', 'SEGI_11931' => 'sgi', 'SEGI_13187' => 'sgi', 'SEGI_29958' => 'sgi', 'SEGI_36351' => 'sgi', 'SGA_v2.0_scaffold126G33770' => 'sas', 'SGA_v2.0_scaffold153G37003' => 'sas', 'SGA_v2.0_scaffold2G01359' => 'sas', 'SGA_v2.0_scaffold5G03064' => 'sas', 'SGA_v2.0_scaffold95G28903' => 'sas', 'SHI12701' => 'shi', 'SHI26410' => 'shi', 'SHI38997' => 'shi', 'SHI53759' => 'shi', 'SHI53886' => 'shi', 'SHI54714' => 'shi', 'SMO011G0041' => 'smo', 'SMO146G0251' => 'smo', 'SMO160G0004' => 'smo', 'SMO174G0057' => 'smo', 'SMO244G0089' => 'smo', 'SMO296G0011' => 'smo', 'Solyc01g091280.3' => 'sly', 'Solyc05g047610.3' => 'sly', 'Solyc05g047640.3' => 'sly', 'Solyc05g055630.3' => 'sly', 'Solyc10g018160.2' => 'sly', 'Solyc10g084820.2' => 'sly', 'Solyc10g086565.2' => 'sly', 'Sopen01g037030' => 'spe', 'Sopen05g027920' => 'spe', 'Sopen05g034070' => 'spe', 'Sopen10g007260' => 'spe', 'Sopen10g034260' => 'spe', 'Sopen10g035950' => 'spe', 'Sp3g07710' => 'spa', 'Sp4g27420' => 'spa', 'Sp5g02450' => 'spa', 'Sp6g01280' => 'spa', 'Sp6g38480' => 'spa', 'Sp7g20780' => 'spa', 'TAR374G1413' => 'tar', 'TAR623G1777' => 'tar', 'TAR629G2370' => 'tar', 'TAR633G1759' => 'tar', 'TAR636G3387' => 'tar', 'THA.LOC104802447' => 'tha', 'THA.LOC104813916' => 'tha', 'THA.LOC104816423' => 'tha', 'THA.LOC104817246' => 'tha', 'THA.LOC104825895' => 'tha', 'Thecc.01G335200' => 'tca', 'Thecc.01G377400' => 'tca', 'Thecc.03G262200' => 'tca', 'Thecc.05G036800' => 'tca', 'Thecc.10G080500' => 'tca', 'Thecc.10G080800' => 'tca', 'Thhalv10001560m.g' => 'esa', 'Thhalv10006120m.g' => 'esa', 'Thhalv10014375m.g' => 'esa', 'Thhalv10021264m.g' => 'esa', 'Thhalv10028856m.g' => 'esa', 'TPR.G1914' => 'tpr', 'TPR.G4757' => 'tpr', 'TPR.G5595' => 'tpr', 'TWI14G0952' => 'twi', 'TWI14G1307' => 'twi', 'TWI38G2143' => 'twi', 'TWI59G0826' => 'twi', 'TWI77G0527' => 'twi', 'TWI81G0150' => 'twi', 'unitig_21.g21018' => 'ugi', 'unitig_26.g9725' => 'ugi', 'unitig_744.g24653' => 'ugi', 'unitig_749.g13778' => 'ugi', 'unitig_899.g15035' => 'ugi', 'vmacro04296' => 'vma', 'vmacro04852' => 'vma', 'vmacro13404' => 'vma', 'vmacro20169' => 'vma', 'vmacro21014' => 'vma', 'VMungo0331G0237' => 'vmu', 'VMungo0331G0706' => 'vmu', 'VMungo0331G1361' => 'vmu', 'VMungo0331G1489' => 'vmu', 'VMungo0540G1037' => 'vmu', 'VMungo0720G2487' => 'vmu', 'VMungo0720G2721' => 'vmu', 'Zm00001eb086860' => 'zma', 'Zm00001eb104760' => 'zma', 'Zm00001eb148220' => 'zma', 'Zm00001eb259030' => 'zma', 'Zm00001eb289590' => 'zma', 'Zm00001eb420150' => 'zma' ) $gf_id = 'HOM05D000968' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000968' ) $data_identifier = 'HOM05D000968' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 19, 'bol' => (int) 9, 'bra' => (int) 12, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 5, 'ccan' => (int) 7, 'cde' => (int) 5, 'cfa' => (int) 8, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 4, 'dca' => (int) 5, 'din' => (int) 5, 'dzi' => (int) 12, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 25, 'fve' => (int) 5, 'gma' => (int) 9, 'ghi' => (int) 18, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 7, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 5, 'sun' => (int) 2, 'lal' => (int) 9, 'lja' => (int) 5, 'lonja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 9, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 2, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 3, 'stu' => (int) 6, 'pvu' => (int) 4, 'ptr' => (int) 8, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 3, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 1, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 5, 'sas' => (int) 5, 'shi' => (int) 6, 'smo' => (int) 6, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 3, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420150' $species_info = array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ) $local_species = 'hma' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000968', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p31690' => 'bna', 'A03p36040' => 'bna', 'A03p53730' => 'bna', 'A04p01410' => 'bna', 'A05p05420' => 'bna', 'A05p39630' => 'bna', 'A05p39640' => 'bna', 'A09p00970' => 'bna', 'A09p53060' => 'bna', 'A10p31890' => 'bna', 'Aa31LG10G15040' => 'aar', 'Aa31LG1G21090' => 'aar', 'Aa31LG1G26900' => 'aar', 'Aa31LG3G1820' => 'aar', 'Aa31LG5G1100' => 'aar', 'Aa31LG6G4740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2265' => 'aag', 'Actinidia07998' => 'ach', 'Actinidia11266' => 'ach', 'Actinidia12682' => 'ach', 'Actinidia26479' => 'ach', 'Actinidia31406' => 'ach', 'Actinidia32437' => 'ach', 'Actinidia38862' => 'ach', 'Ah.05g174230' => 'amhyb', 'Ah.05g179070' => 'amhyb', 'Ah.05g179090' => 'amhyb', 'Ah.12g059950' => 'amhyb', 'AL3G20480' => 'aly', 'AL4G44520' => 'aly', 'AL5G43110' => 'aly', 'AL6G13890' => 'aly', 'AL6G52620' => 'aly', 'AL7G30830' => 'aly', 'Aqoxy1G00899' => 'aox', 'Aqoxy5G04333' => 'aox', 'Aqoxy7G00641' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3IZ0NN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4EF6AW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W9P8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79GA3M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C43NQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFCU6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G95YVJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCHK29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LU1UG8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX91RN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGB4B1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8DA0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9H7JI' => 'arhy', 'AT3G09320' => 'ath', 'AT3G60800' => 'ath', 'AT4G00840' => 'ath', 'AT4G22750' => 'ath', 'AT5G04270' => 'ath', 'ATR0090G003' => 'atr', 'ATR0559G349' => 'atr', 'ATR0680G261' => 'atr', 'ATR0810G048' => 'atr', 'Atru.chr12.831' => 'acertr', 'Atru.chr5.303' => 'acertr', 'Atru.chr5.748' => 'acertr', 'Atru.chr8.1999' => 'acertr', 'Atru.chr9.1436' => 'acertr', 'AUR62004211' => 'cqu', 'AUR62004548' => 'cqu', 'AUR62013637' => 'cqu', 'AUR62022662' => 'cqu', 'AUR62025777' => 'cqu', 'AUR62042386' => 'cqu', 'BcaB01g02310' => 'bca', 'BcaB01g06062' => 'bca', 'BcaB02g08975' => 'bca', 'BcaB02g08980' => 'bca', 'BcaC01g04228' => 'bca', 'BcaC01g06830' => 'bca', 'BcaC02g10186' => 'bca', 'BcaC02g12214' => 'bca', 'BcaC04g24101' => 'bca', 'BcaC05g29520' => 'bca', 'BcaC05g29661' => 'bca', 'BcaC06g32130' => 'bca', 'BcaC06g32131' => 'bca', 'BcaC07g40601' => 'bca', 'BcaC07g42641' => 'bca', 'BcaNung01038' => 'bca', 'BcaNung01676' => 'bca', 'BcaNung02480' => 'bca', 'BcaNung07376' => 'bca', 'BolC3t16146H' => 'bol', 'BolC3t16637H' => 'bol', 'BolC4t22257H' => 'bol', 'BolC4t24728H' => 'bol', 'BolC5t34517H' => 'bol', 'BolC7t45703H' => 'bol', 'BolC8t51166H' => 'bol', 'BolC9t53038H' => 'bol', 'BolC9t60000H' => 'bol', 'BraA01t01345Z' => 'bra', 'BraA01t01346Z' => 'bra', 'BraA01t01348Z' => 'bra', 'BraA03t12347Z' => 'bra', 'BraA03t12775Z' => 'bra', 'BraA03t14439Z' => 'bra', 'BraA04t15860Z' => 'bra', 'BraA05t19511Z' => 'bra', 'BraA05t22746Z' => 'bra', 'BraA09t35767Z' => 'bra', 'BraA09t40732Z' => 'bra', 'BraA10t45233Z' => 'bra', 'C03p38720' => 'bna', 'C03p43680' => 'bna', 'C04p06350' => 'bna', 'C04p31800' => 'bna', 'C05p58680' => 'bna', 'C07p52110' => 'bna', 'C08p35760' => 'bna', 'C09p01050' => 'bna', 'C09p72600' => 'bna', 'CAN.G106.2' => 'can', 'CAN.G1482.1' => 'can', 'CAN.G324.12' => 'can', 'CAN.G388.20' => 'can', 'CAN.G412.7' => 'can', 'CAN.G694.32' => 'can', 'CAN.G92.12' => 'can', 'CANSAT11G2353' => 'cansat', 'CANSAT21G1398' => 'cansat', 'CANSAT56G2456' => 'cansat', 'CANSAT56G3031' => 'cansat', 'CANSAT56G4539' => 'cansat', 'CARHR083680' => 'chi', 'CARHR171190' => 'chi', 'CARHR209010' => 'chi', 'CARHR229680' => 'chi', 'CARHR249490' => 'chi', 'Carub.0003s0844' => 'cru', 'Carub.0005s2755' => 'cru', 'Carub.0006s0322' => 'cru', 'Carub.0006s3586' => 'cru', 'Carub.0007s1855' => 'cru', 'Ca_07808_v3' => 'car', 'Ca_09535_v3' => 'car', 'Ca_10548_v3' => 'car', 'Ca_19913_v3' => 'car', 'Ca_19916_v3' => 'car', 'Ca_19975_v3' => 'car', 'CBR_g22876' => 'cbr', 'CBR_g22879' => 'cbr', 'CBR_g38491' => 'cbr', 'CBR_g54185' => 'cbr', 'CBR_g54190' => 'cbr', 'Cc02_g11020' => 'ccan', 'Cc02_g23920' => 'ccan', 'Cc02_g39860' => 'ccan', 'Cc02_g39870' => 'ccan', 'Cc03_g06760' => 'ccan', 'Cc06_g02450' => 'ccan', 'Cc09_g09450' => 'ccan', 'CDE02G1959' => 'cde', 'CDE04G0600' => 'cde', 'CDE07G1996' => 'cde', 'CDE07G2078' => 'cde', 'CDE11G0611' => 'cde', 'Cfa001683' => 'cfa', 'Cfa001734' => 'cfa', 'Cfa001737' => 'cfa', 'Cfa003751' => 'cfa', 'Cfa012019' => 'cfa', 'Cfa017353' => 'cfa', 'Cfa017732' => 'cfa', 'Cfa022464' => 'cfa', 'Ciclev10012400m.g' => 'ccl', 'Ciclev10021242m.g' => 'ccl', 'Ciclev10021302m.g' => 'ccl', 'Ciclev10021463m.g' => 'ccl', 'Ciclev10032359m.g' => 'ccl', 'CiPaw.01G081000' => 'cil', 'CiPaw.01G262500' => 'cil', 'CiPaw.01G269800' => 'cil', 'CiPaw.02G168400' => 'cil', 'CiPaw.05G119500' => 'cil', 'CiPaw.11G147300' => 'cil', 'ClCG01G003630' => 'cla', 'ClCG05G000510' => 'cla', 'ClCG05G002300' => 'cla', 'ClCG08G007650' => 'cla', 'ClCG10G021250' => 'cla', 'COL.COLO4_06218' => 'col', 'COL.COLO4_12538' => 'col', 'COL.COLO4_14775' => 'col', 'COL.COLO4_23875' => 'col', 'Cpa.g.sc141.16' => 'cpa', 'Cpa.g.sc169.16' => 'cpa', 'Cpa.g.sc244.4' => 'cpa', 'Cpa.g.sc244.5' => 'cpa', 'Cpa.g.sc29.87' => 'cpa', 'Cpa.g.sc53.115' => 'cpa', 'Cre03.g207502' => 'cre', 'Cre06.g277000' => 'cre', 'Cre09.g394050' => 'cre', 'CsaV3_3G007680' => 'csa', 'CsaV3_3G009710' => 'csa', 'CsaV3_3G034790' => 'csa', 'CsaV3_5G003750' => 'csa', 'CsaV3_6G036620' => 'csa', 'CSS0002288' => 'camsi', 'CSS0011250' => 'camsi', 'CSS0021619' => 'camsi', 'CSS0046701' => 'camsi', 'DCAR_006420' => 'dca', 'DCAR_006865' => 'dca', 'DCAR_008558' => 'dca', 'DCAR_028754' => 'dca', 'DCAR_028755' => 'dca', 'Dinv31218' => 'din', 'Dinv32371' => 'din', 'Dinv34250' => 'din', 'Dinv37156' => 'din', 'Dinv43704' => 'din', 'Duzib093G1811' => 'dzi', 'Duzib106G1622' => 'dzi', 'Duzib114G0504' => 'dzi', 'Duzib128G0338' => 'dzi', 'Duzib128G1577' => 'dzi', 'Duzib133G0104' => 'dzi', 'Duzib133G1080' => 'dzi', 'Duzib138G0324' => 'dzi', 'Duzib138G0394' => 'dzi', 'Duzib205G0122' => 'dzi', 'Duzib268G1020' => 'dzi', 'Duzib268G1359' => 'dzi', 'ECA232G3929' => 'eca', 'ECA236G2210' => 'eca', 'ECA236G2287' => 'eca', 'ECA240G4568' => 'eca', 'ECA247G0894' => 'eca', 'EL10Ac1g00200' => 'bvu', 'EL10Ac1g00886' => 'bvu', 'EL10As1g23091' => 'bvu', 'EL10As1g23092' => 'bvu', 'Eucgr.A01284' => 'egr', 'Eucgr.A01285' => 'egr', 'Eucgr.D02456' => 'egr', 'Eucgr.E00018' => 'egr', 'Eucgr.E01439' => 'egr', 'Eucgr.G02859' => 'egr', 'FAN01G0168' => 'fan', 'FAN01G0453' => 'fan', 'FAN01G2761' => 'fan', 'FAN02G1239' => 'fan', 'FAN03G0645' => 'fan', 'FAN03G2707' => 'fan', 'FAN03G2978' => 'fan', 'FAN04G0227' => 'fan', 'FAN06G0091' => 'fan', 'FAN06G1418' => 'fan', 'FAN06G1512' => 'fan', 'FAN06G1986' => 'fan', 'FAN06G2905' => 'fan', 'FAN06G4325' => 'fan', 'FAN08G0033' => 'fan', 'FAN09G0642' => 'fan', 'FAN10G1763' => 'fan', 'FAN10G2026' => 'fan', 'FAN10G2513' => 'fan', 'FAN10G3402' => 'fan', 'FAN10G3564' => 'fan', 'FAN10G3987' => 'fan', 'FAN13G1490' => 'fan', 'FAN14G5857' => 'fan', 'FAN18G1188' => 'fan', 'FvH4_5g00750' => 'fve', 'FvH4_6g13410' => 'fve', 'FvH4_7g11740' => 'fve', 'FvH4_7g17410' => 'fve', 'FvH4_7g18860' => 'fve', 'Glyma.01G099100' => 'gma', 'Glyma.01G142300' => 'gma', 'Glyma.03G025500' => 'gma', 'Glyma.03G069700' => 'gma', 'Glyma.03G260000' => 'gma', 'Glyma.09G269800' => 'gma', 'Glyma.10G208700' => 'gma', 'Glyma.18G220400' => 'gma', 'Glyma.20G182000' => 'gma', 'Gohir.A01G221726' => 'ghi', 'Gohir.A07G134600' => 'ghi', 'Gohir.A07G146000' => 'ghi', 'Gohir.A08G173900' => 'ghi', 'Gohir.A09G194900' => 'ghi', 'Gohir.A10G204100' => 'ghi', 'Gohir.A11G080600' => 'ghi', 'Gohir.A11G327500' => 'ghi', 'Gohir.A12G101800' => 'ghi', 'Gohir.D01G211200' => 'ghi', 'Gohir.D07G139200' => 'ghi', 'Gohir.D07G152100' => 'ghi', 'Gohir.D08G192600' => 'ghi', 'Gohir.D09G189200' => 'ghi', 'Gohir.D10G212000' => 'ghi', 'Gohir.D11G085200' => 'ghi', 'Gohir.D11G346400' => 'ghi', 'Gohir.D12G104800' => 'ghi', 'Gorai.001G151300' => 'gra', 'Gorai.001G174100' => 'gra', 'Gorai.002G257000' => 'gra', 'Gorai.004G202600' => 'gra', 'Gorai.007G090900' => 'gra', 'Gorai.007G376700' => 'gra', 'Gorai.008G114100' => 'gra', 'Gorai.011G237900' => 'gra', 'GSVIVG01005450001' => 'vvi', 'GSVIVG01016232001' => 'vvi', 'GSVIVG01026157001' => 'vvi', 'GSVIVG01027419001' => 'vvi', 'GSVIVG01027631001' => 'vvi', 'GSVIVG01034143001' => 'vvi', 'HanXRQChr03g0093921' => 'han', 'HanXRQChr04g0120001' => 'han', 'HanXRQChr04g0122561' => 'han', 'HanXRQChr09g0246851' => 'han', 'HanXRQChr10g0293311' => 'han', 'HanXRQChr13g0425231' => 'han', 'HanXRQChr16g0532571' => 'han', 'Haze_09050' => 'cav', 'Haze_15715' => 'cav', 'Haze_15716' => 'cav', 'Haze_16803' => 'cav', 'Haze_16850' => 'cav', 'Hma1.2p1_0301F.1_g118655' => 'hma', 'Hma1.2p1_0309F.1_g120590' => 'hma', 'Hma1.2p1_0936F.1_g238900' => 'hma', 'Hma1.2p1_3552F.1_g336740' => 'hma', 'HPP92_003520' => 'vpl', 'HPP92_006628' => 'vpl', 'HPP92_006645' => 'vpl', 'HPP92_014669' => 'vpl', 'HPP92_015077' => 'vpl', 'Hund16742' => 'sun', 'Hund17022' => 'sun', 'Lalb_Chr02g0152131' => 'lal', 'Lalb_Chr05g0225371' => 'lal', 'Lalb_Chr07g0189841' => 'lal', 'Lalb_Chr07g0192961' => 'lal', 'Lalb_Chr12g0208221' => 'lal', 'Lalb_Chr13g0291211' => 'lal', 'Lalb_Chr13g0291781' => 'lal', 'Lalb_Chr18g0044651' => 'lal', 'Lalb_Chr21g0313731' => 'lal', 'Lj1g0022533' => 'lja', 'Lj2A18T50' => 'lonja', 'Lj2A92G93' => 'lonja', 'Lj3A965T73' => 'lonja', 'Lj3g0000673' => 'lja', 'Lj3g0002666' => 'lja', 'Lj4g0016985' => 'lja', 'Lj5g0003625' => 'lja', 'Lj7A529G36' => 'lonja', 'Lj9A569T49' => 'lonja', 'Lj9A604T63' => 'lonja', 'Lsat_1_v5_gn_3_132060' => 'lsa', 'Lsat_1_v5_gn_4_68941' => 'lsa', 'Lsat_1_v5_gn_5_95580' => 'lsa', 'Lsat_1_v5_gn_7_161' => 'lsa', 'Lsat_1_v5_gn_7_7041' => 'lsa', 'Lsat_1_v5_gn_9_33481' => 'lsa', 'Lsat_1_v5_gn_9_68260' => 'lsa', 'Manes.01G073100' => 'mes', 'Manes.01G266300' => 'mes', 'Manes.02G033300' => 'mes', 'Manes.05G017900' => 'mes', 'Manes.05G046100' => 'mes', 'Manes.08G080900' => 'mes', 'Manes.10G049400' => 'mes', 'Mapoly0009s0186' => 'mpo', 'Mapoly0036s0118' => 'mpo', 'Mapoly0101s0046' => 'mpo', 'MBI04_g30218_MAGBIO' => 'mbi', 'MBI04_g35564_MAGBIO' => 'mbi', 'MBI12_g34011_MAGBIO' => 'mbi', 'MBI14_g04655_MAGBIO' => 'mbi', 'MCO07G653' => 'mco', 'MCO10G173' => 'mco', 'MD01G1087100' => 'mdo', 'MD01G1104200' => 'mdo', 'MD02G1205100' => 'mdo', 'MD04G1079200' => 'mdo', 'MD04G1131400' => 'mdo', 'MD07G1121600' => 'mdo', 'MD07G1157300' => 'mdo', 'MD07G1171000' => 'mdo', 'MD12G1144500' => 'mdo', 'Medtr1g094610' => 'mtr', 'Medtr4g021795' => 'mtr', 'Medtr4g023760' => 'mtr', 'Medtr7g118050' => 'mtr', 'MELO3C005582.2' => 'cme', 'MELO3C005989.2' => 'cme', 'MELO3C006192.2' => 'cme', 'MELO3C009248.2' => 'cme', 'MELO3C019817.2' => 'cme', 'Migut.B01625' => 'egut', 'Migut.B01915' => 'egut', 'Migut.F01721' => 'egut', 'Migut.J00314' => 'egut', 'MSTRG.20742' => 'ama', 'MSTRG.8134' => 'ama', 'Nitab4.5_0000096g0010' => 'nta', 'Nitab4.5_0000202g0030' => 'nta', 'Nitab4.5_0000216g0370' => 'nta', 'Nitab4.5_0000457g0230' => 'nta', 'Nitab4.5_0001702g0170' => 'nta', 'Nitab4.5_0003607g0010' => 'nta', 'Nitab4.5_0004917g0020' => 'nta', 'Nitab4.5_0007059g0010' => 'nta', 'Nitab4.5_0007184g0010' => 'nta', 'Nitab4.5_0007346g0020' => 'nta', 'Nn1g00410' => 'nnu', 'Nn1g01252' => 'nnu', 'Nn2g11168' => 'nnu', 'Nn2g13403' => 'nnu', 'Nn2g13760' => 'nnu', 'Nn4g26380' => 'nnu', 'Oeu000806.2' => 'oeu', 'Oeu005788.1' => 'oeu', 'Oeu006900.3' => 'oeu', 'Oeu007797.1' => 'oeu', 'Oeu011932.1' => 'oeu', 'Oeu022739.1' => 'oeu', 'Oeu037918.1' => 'oeu', 'Oeu055490.2' => 'oeu', 'Os01g0844400' => 'osa', 'Os02g0819100' => 'osa', 'Os03g0804300' => 'osa', 'Os05g0458000' => 'osa', 'Os07g0467800' => 'osa', 'Os12g0602200' => 'osa', 'Peaxi162Scf00013g03444' => 'pax', 'Peaxi162Scf00094g01120' => 'pax', 'Peaxi162Scf00191g01211' => 'pax', 'Peaxi162Scf00238g01110' => 'pax', 'Peaxi162Scf00330g00719' => 'pax', 'Peaxi162Scf00627g00018' => 'pax', 'PGR031G2686' => 'pgr', 'PGR042G0809' => 'pgr', 'PGR142G0193' => 'pgr', 'PGSC0003DMG400011066' => 'stu', 'PGSC0003DMG400012041' => 'stu', 'PGSC0003DMG400013678' => 'stu', 'PGSC0003DMG400023477' => 'stu', 'PGSC0003DMG400025956' => 'stu', 'PGSC0003DMG401019151' => 'stu', 'Phvul.006G116400' => 'pvu', 'Phvul.007G097300' => 'pvu', 'Phvul.010G015000' => 'pvu', 'Phvul.010G083900' => 'pvu', 'Potri.001G117100' => 'ptr', 'Potri.002G147300' => 'ptr', 'Potri.003G115600' => 'ptr', 'Potri.006G087400' => 'ptr', 'Potri.010G226100' => 'ptr', 'Potri.014G069200' => 'ptr', 'Potri.014G104000' => 'ptr', 'Potri.016G100200' => 'ptr', 'Pp3c10_20450' => 'ppa', 'Pp3c1_42400' => 'ppa', 'Pp3c3_24390' => 'ppa', 'Pp3c3_2860' => 'ppa', 'PRCOL_00003193' => 'pco', 'Prupe.2G144500' => 'ppe', 'Prupe.2G195700' => 'ppe', 'Prupe.2G209800' => 'ppe', 'Prupe.5G080000' => 'ppe', 'Prupe.6G257900' => 'ppe', 'Psat3g001160' => 'psa', 'Psat6g181880' => 'psa', 'Psat7g233720' => 'psa', 'PSO063G7587' => 'pso', 'PSO339G2145' => 'pso', 'PSO339G3369' => 'pso', 'PSO478G2747' => 'pso', 'PSO513G0140' => 'pso', 'PSO782G1614' => 'pso', 'PSO782G4889' => 'pso', 'PSO782G5485' => 'pso', 'PSO801G0241' => 'pso', 'QL07p048854' => 'qlo', 'QL08p046745' => 'qlo', 'QL08p052606' => 'qlo', 'QL08p053414' => 'qlo', 'QL08p054868' => 'qlo', 'RcHm_v2.0_Chr1g0350251' => 'rch', 'RcHm_v2.0_Chr1g0360851' => 'rch', 'RcHm_v2.0_Chr1g0362791' => 'rch', 'RcHm_v2.0_Chr3g0466281' => 'rch', 'RcHm_v2.0_Chr7g0201481' => 'rch', 'Rhsim01G0148600' => 'rsi', 'Rhsim05G0194400' => 'rsi', 'Rhsim07G0000700' => 'rsi', 'Rhsim07G0000800' => 'rsi', 'Rhsim07G0027900' => 'rsi', 'Rhsim09G0149500' => 'rsi', 'RhsimUnG0186900' => 'rsi', 'Sabra01G0089900' => 'sbr', 'Sabra02G0114700' => 'sbr', 'Sabra02G0116300' => 'sbr', 'Sabra03G0080100' => 'sbr', 'Sabra08G0024300' => 'sbr', 'Sabra10G0174300' => 'sbr', 'Sabra14G0048900' => 'sbr', 'Sabra14G0076500' => 'sbr', 'SalBow5G2513' => 'sbo', 'Sc01g0002300' => 'sci', 'Sc01g0004450' => 'sci', 'Sc06g0001680' => 'sci', 'Sc23g0003580' => 'sci', 'Sed0000913' => 'sed', 'Sed0001655' => 'sed', 'Sed0007745' => 'sed', 'Sed0010951' => 'sed', 'Sed0017599' => 'sed', 'Sed0021405' => 'sed', 'Sed0022810' => 'sed', 'SEGI_07099' => 'sgi', 'SEGI_11931' => 'sgi', 'SEGI_13187' => 'sgi', 'SEGI_29958' => 'sgi', 'SEGI_36351' => 'sgi', 'SGA_v2.0_scaffold126G33770' => 'sas', 'SGA_v2.0_scaffold153G37003' => 'sas', 'SGA_v2.0_scaffold2G01359' => 'sas', 'SGA_v2.0_scaffold5G03064' => 'sas', 'SGA_v2.0_scaffold95G28903' => 'sas', 'SHI12701' => 'shi', 'SHI26410' => 'shi', 'SHI38997' => 'shi', 'SHI53759' => 'shi', 'SHI53886' => 'shi', 'SHI54714' => 'shi', 'SMO011G0041' => 'smo', 'SMO146G0251' => 'smo', 'SMO160G0004' => 'smo', 'SMO174G0057' => 'smo', 'SMO244G0089' => 'smo', 'SMO296G0011' => 'smo', 'Solyc01g091280.3' => 'sly', 'Solyc05g047610.3' => 'sly', 'Solyc05g047640.3' => 'sly', 'Solyc05g055630.3' => 'sly', 'Solyc10g018160.2' => 'sly', 'Solyc10g084820.2' => 'sly', 'Solyc10g086565.2' => 'sly', 'Sopen01g037030' => 'spe', 'Sopen05g027920' => 'spe', 'Sopen05g034070' => 'spe', 'Sopen10g007260' => 'spe', 'Sopen10g034260' => 'spe', 'Sopen10g035950' => 'spe', 'Sp3g07710' => 'spa', 'Sp4g27420' => 'spa', 'Sp5g02450' => 'spa', 'Sp6g01280' => 'spa', 'Sp6g38480' => 'spa', 'Sp7g20780' => 'spa', 'TAR374G1413' => 'tar', 'TAR623G1777' => 'tar', 'TAR629G2370' => 'tar', 'TAR633G1759' => 'tar', 'TAR636G3387' => 'tar', 'THA.LOC104802447' => 'tha', 'THA.LOC104813916' => 'tha', 'THA.LOC104816423' => 'tha', 'THA.LOC104817246' => 'tha', 'THA.LOC104825895' => 'tha', 'Thecc.01G335200' => 'tca', 'Thecc.01G377400' => 'tca', 'Thecc.03G262200' => 'tca', 'Thecc.05G036800' => 'tca', 'Thecc.10G080500' => 'tca', 'Thecc.10G080800' => 'tca', 'Thhalv10001560m.g' => 'esa', 'Thhalv10006120m.g' => 'esa', 'Thhalv10014375m.g' => 'esa', 'Thhalv10021264m.g' => 'esa', 'Thhalv10028856m.g' => 'esa', 'TPR.G1914' => 'tpr', 'TPR.G4757' => 'tpr', 'TPR.G5595' => 'tpr', 'TWI14G0952' => 'twi', 'TWI14G1307' => 'twi', 'TWI38G2143' => 'twi', 'TWI59G0826' => 'twi', 'TWI77G0527' => 'twi', 'TWI81G0150' => 'twi', 'unitig_21.g21018' => 'ugi', 'unitig_26.g9725' => 'ugi', 'unitig_744.g24653' => 'ugi', 'unitig_749.g13778' => 'ugi', 'unitig_899.g15035' => 'ugi', 'vmacro04296' => 'vma', 'vmacro04852' => 'vma', 'vmacro13404' => 'vma', 'vmacro20169' => 'vma', 'vmacro21014' => 'vma', 'VMungo0331G0237' => 'vmu', 'VMungo0331G0706' => 'vmu', 'VMungo0331G1361' => 'vmu', 'VMungo0331G1489' => 'vmu', 'VMungo0540G1037' => 'vmu', 'VMungo0720G2487' => 'vmu', 'VMungo0720G2721' => 'vmu', 'Zm00001eb086860' => 'zma', 'Zm00001eb104760' => 'zma', 'Zm00001eb148220' => 'zma', 'Zm00001eb259030' => 'zma', 'Zm00001eb289590' => 'zma', 'Zm00001eb420150' => 'zma' ), 'gf_id' => 'HOM05D000968', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000968' ), 'data_identifier' => 'HOM05D000968', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000968', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p31690' => 'bna', 'A03p36040' => 'bna', 'A03p53730' => 'bna', 'A04p01410' => 'bna', 'A05p05420' => 'bna', 'A05p39630' => 'bna', 'A05p39640' => 'bna', 'A09p00970' => 'bna', 'A09p53060' => 'bna', 'A10p31890' => 'bna', 'Aa31LG10G15040' => 'aar', 'Aa31LG1G21090' => 'aar', 'Aa31LG1G26900' => 'aar', 'Aa31LG3G1820' => 'aar', 'Aa31LG5G1100' => 'aar', 'Aa31LG6G4740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2265' => 'aag', 'Actinidia07998' => 'ach', 'Actinidia11266' => 'ach', 'Actinidia12682' => 'ach', 'Actinidia26479' => 'ach', 'Actinidia31406' => 'ach', 'Actinidia32437' => 'ach', 'Actinidia38862' => 'ach', 'Ah.05g174230' => 'amhyb', 'Ah.05g179070' => 'amhyb', 'Ah.05g179090' => 'amhyb', 'Ah.12g059950' => 'amhyb', 'AL3G20480' => 'aly', 'AL4G44520' => 'aly', 'AL5G43110' => 'aly', 'AL6G13890' => 'aly', 'AL6G52620' => 'aly', 'AL7G30830' => 'aly', 'Aqoxy1G00899' => 'aox', 'Aqoxy5G04333' => 'aox', 'Aqoxy7G00641' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3IZ0NN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4EF6AW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W9P8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79GA3M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C43NQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFCU6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G95YVJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCHK29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LU1UG8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX91RN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGB4B1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8DA0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9H7JI' => 'arhy', 'AT3G09320' => 'ath', 'AT3G60800' => 'ath', 'AT4G00840' => 'ath', 'AT4G22750' => 'ath', 'AT5G04270' => 'ath', 'ATR0090G003' => 'atr', 'ATR0559G349' => 'atr', 'ATR0680G261' => 'atr', 'ATR0810G048' => 'atr', 'Atru.chr12.831' => 'acertr', 'Atru.chr5.303' => 'acertr', 'Atru.chr5.748' => 'acertr', 'Atru.chr8.1999' => 'acertr', 'Atru.chr9.1436' => 'acertr', 'AUR62004211' => 'cqu', 'AUR62004548' => 'cqu', 'AUR62013637' => 'cqu', 'AUR62022662' => 'cqu', 'AUR62025777' => 'cqu', 'AUR62042386' => 'cqu', 'BcaB01g02310' => 'bca', 'BcaB01g06062' => 'bca', 'BcaB02g08975' => 'bca', 'BcaB02g08980' => 'bca', 'BcaC01g04228' => 'bca', 'BcaC01g06830' => 'bca', 'BcaC02g10186' => 'bca', 'BcaC02g12214' => 'bca', 'BcaC04g24101' => 'bca', 'BcaC05g29520' => 'bca', 'BcaC05g29661' => 'bca', 'BcaC06g32130' => 'bca', 'BcaC06g32131' => 'bca', 'BcaC07g40601' => 'bca', 'BcaC07g42641' => 'bca', 'BcaNung01038' => 'bca', 'BcaNung01676' => 'bca', 'BcaNung02480' => 'bca', 'BcaNung07376' => 'bca', 'BolC3t16146H' => 'bol', 'BolC3t16637H' => 'bol', 'BolC4t22257H' => 'bol', 'BolC4t24728H' => 'bol', 'BolC5t34517H' => 'bol', 'BolC7t45703H' => 'bol', 'BolC8t51166H' => 'bol', 'BolC9t53038H' => 'bol', 'BolC9t60000H' => 'bol', 'BraA01t01345Z' => 'bra', 'BraA01t01346Z' => 'bra', 'BraA01t01348Z' => 'bra', 'BraA03t12347Z' => 'bra', 'BraA03t12775Z' => 'bra', 'BraA03t14439Z' => 'bra', 'BraA04t15860Z' => 'bra', 'BraA05t19511Z' => 'bra', 'BraA05t22746Z' => 'bra', 'BraA09t35767Z' => 'bra', 'BraA09t40732Z' => 'bra', 'BraA10t45233Z' => 'bra', 'C03p38720' => 'bna', 'C03p43680' => 'bna', 'C04p06350' => 'bna', 'C04p31800' => 'bna', 'C05p58680' => 'bna', 'C07p52110' => 'bna', 'C08p35760' => 'bna', 'C09p01050' => 'bna', 'C09p72600' => 'bna', 'CAN.G106.2' => 'can', 'CAN.G1482.1' => 'can', 'CAN.G324.12' => 'can', 'CAN.G388.20' => 'can', 'CAN.G412.7' => 'can', 'CAN.G694.32' => 'can', 'CAN.G92.12' => 'can', 'CANSAT11G2353' => 'cansat', 'CANSAT21G1398' => 'cansat', 'CANSAT56G2456' => 'cansat', 'CANSAT56G3031' => 'cansat', 'CANSAT56G4539' => 'cansat', 'CARHR083680' => 'chi', 'CARHR171190' => 'chi', 'CARHR209010' => 'chi', 'CARHR229680' => 'chi', 'CARHR249490' => 'chi', 'Carub.0003s0844' => 'cru', 'Carub.0005s2755' => 'cru', 'Carub.0006s0322' => 'cru', 'Carub.0006s3586' => 'cru', 'Carub.0007s1855' => 'cru', 'Ca_07808_v3' => 'car', 'Ca_09535_v3' => 'car', 'Ca_10548_v3' => 'car', 'Ca_19913_v3' => 'car', 'Ca_19916_v3' => 'car', 'Ca_19975_v3' => 'car', 'CBR_g22876' => 'cbr', 'CBR_g22879' => 'cbr', 'CBR_g38491' => 'cbr', 'CBR_g54185' => 'cbr', 'CBR_g54190' => 'cbr', 'Cc02_g11020' => 'ccan', 'Cc02_g23920' => 'ccan', 'Cc02_g39860' => 'ccan', 'Cc02_g39870' => 'ccan', 'Cc03_g06760' => 'ccan', 'Cc06_g02450' => 'ccan', 'Cc09_g09450' => 'ccan', 'CDE02G1959' => 'cde', 'CDE04G0600' => 'cde', 'CDE07G1996' => 'cde', 'CDE07G2078' => 'cde', 'CDE11G0611' => 'cde', 'Cfa001683' => 'cfa', 'Cfa001734' => 'cfa', 'Cfa001737' => 'cfa', 'Cfa003751' => 'cfa', 'Cfa012019' => 'cfa', 'Cfa017353' => 'cfa', 'Cfa017732' => 'cfa', 'Cfa022464' => 'cfa', 'Ciclev10012400m.g' => 'ccl', 'Ciclev10021242m.g' => 'ccl', 'Ciclev10021302m.g' => 'ccl', 'Ciclev10021463m.g' => 'ccl', 'Ciclev10032359m.g' => 'ccl', 'CiPaw.01G081000' => 'cil', 'CiPaw.01G262500' => 'cil', 'CiPaw.01G269800' => 'cil', 'CiPaw.02G168400' => 'cil', 'CiPaw.05G119500' => 'cil', 'CiPaw.11G147300' => 'cil', 'ClCG01G003630' => 'cla', 'ClCG05G000510' => 'cla', 'ClCG05G002300' => 'cla', 'ClCG08G007650' => 'cla', 'ClCG10G021250' => 'cla', 'COL.COLO4_06218' => 'col', 'COL.COLO4_12538' => 'col', 'COL.COLO4_14775' => 'col', 'COL.COLO4_23875' => 'col', 'Cpa.g.sc141.16' => 'cpa', 'Cpa.g.sc169.16' => 'cpa', 'Cpa.g.sc244.4' => 'cpa', 'Cpa.g.sc244.5' => 'cpa', 'Cpa.g.sc29.87' => 'cpa', 'Cpa.g.sc53.115' => 'cpa', 'Cre03.g207502' => 'cre', 'Cre06.g277000' => 'cre', 'Cre09.g394050' => 'cre', 'CsaV3_3G007680' => 'csa', 'CsaV3_3G009710' => 'csa', 'CsaV3_3G034790' => 'csa', 'CsaV3_5G003750' => 'csa', 'CsaV3_6G036620' => 'csa', 'CSS0002288' => 'camsi', 'CSS0011250' => 'camsi', 'CSS0021619' => 'camsi', 'CSS0046701' => 'camsi', 'DCAR_006420' => 'dca', 'DCAR_006865' => 'dca', 'DCAR_008558' => 'dca', 'DCAR_028754' => 'dca', 'DCAR_028755' => 'dca', 'Dinv31218' => 'din', 'Dinv32371' => 'din', 'Dinv34250' => 'din', 'Dinv37156' => 'din', 'Dinv43704' => 'din', 'Duzib093G1811' => 'dzi', 'Duzib106G1622' => 'dzi', 'Duzib114G0504' => 'dzi', 'Duzib128G0338' => 'dzi', 'Duzib128G1577' => 'dzi', 'Duzib133G0104' => 'dzi', 'Duzib133G1080' => 'dzi', 'Duzib138G0324' => 'dzi', 'Duzib138G0394' => 'dzi', 'Duzib205G0122' => 'dzi', 'Duzib268G1020' => 'dzi', 'Duzib268G1359' => 'dzi', 'ECA232G3929' => 'eca', 'ECA236G2210' => 'eca', 'ECA236G2287' => 'eca', 'ECA240G4568' => 'eca', 'ECA247G0894' => 'eca', 'EL10Ac1g00200' => 'bvu', 'EL10Ac1g00886' => 'bvu', 'EL10As1g23091' => 'bvu', 'EL10As1g23092' => 'bvu', 'Eucgr.A01284' => 'egr', 'Eucgr.A01285' => 'egr', 'Eucgr.D02456' => 'egr', 'Eucgr.E00018' => 'egr', 'Eucgr.E01439' => 'egr', 'Eucgr.G02859' => 'egr', 'FAN01G0168' => 'fan', 'FAN01G0453' => 'fan', 'FAN01G2761' => 'fan', 'FAN02G1239' => 'fan', 'FAN03G0645' => 'fan', 'FAN03G2707' => 'fan', 'FAN03G2978' => 'fan', 'FAN04G0227' => 'fan', 'FAN06G0091' => 'fan', 'FAN06G1418' => 'fan', 'FAN06G1512' => 'fan', 'FAN06G1986' => 'fan', 'FAN06G2905' => 'fan', 'FAN06G4325' => 'fan', 'FAN08G0033' => 'fan', 'FAN09G0642' => 'fan', 'FAN10G1763' => 'fan', 'FAN10G2026' => 'fan', 'FAN10G2513' => 'fan', 'FAN10G3402' => 'fan', 'FAN10G3564' => 'fan', 'FAN10G3987' => 'fan', 'FAN13G1490' => 'fan', 'FAN14G5857' => 'fan', 'FAN18G1188' => 'fan', 'FvH4_5g00750' => 'fve', 'FvH4_6g13410' => 'fve', 'FvH4_7g11740' => 'fve', 'FvH4_7g17410' => 'fve', 'FvH4_7g18860' => 'fve', 'Glyma.01G099100' => 'gma', 'Glyma.01G142300' => 'gma', 'Glyma.03G025500' => 'gma', 'Glyma.03G069700' => 'gma', 'Glyma.03G260000' => 'gma', 'Glyma.09G269800' => 'gma', 'Glyma.10G208700' => 'gma', 'Glyma.18G220400' => 'gma', 'Glyma.20G182000' => 'gma', 'Gohir.A01G221726' => 'ghi', 'Gohir.A07G134600' => 'ghi', 'Gohir.A07G146000' => 'ghi', 'Gohir.A08G173900' => 'ghi', 'Gohir.A09G194900' => 'ghi', 'Gohir.A10G204100' => 'ghi', 'Gohir.A11G080600' => 'ghi', 'Gohir.A11G327500' => 'ghi', 'Gohir.A12G101800' => 'ghi', 'Gohir.D01G211200' => 'ghi', 'Gohir.D07G139200' => 'ghi', 'Gohir.D07G152100' => 'ghi', 'Gohir.D08G192600' => 'ghi', 'Gohir.D09G189200' => 'ghi', 'Gohir.D10G212000' => 'ghi', 'Gohir.D11G085200' => 'ghi', 'Gohir.D11G346400' => 'ghi', 'Gohir.D12G104800' => 'ghi', 'Gorai.001G151300' => 'gra', 'Gorai.001G174100' => 'gra', 'Gorai.002G257000' => 'gra', 'Gorai.004G202600' => 'gra', 'Gorai.007G090900' => 'gra', 'Gorai.007G376700' => 'gra', 'Gorai.008G114100' => 'gra', 'Gorai.011G237900' => 'gra', 'GSVIVG01005450001' => 'vvi', 'GSVIVG01016232001' => 'vvi', 'GSVIVG01026157001' => 'vvi', 'GSVIVG01027419001' => 'vvi', 'GSVIVG01027631001' => 'vvi', 'GSVIVG01034143001' => 'vvi', 'HanXRQChr03g0093921' => 'han', 'HanXRQChr04g0120001' => 'han', 'HanXRQChr04g0122561' => 'han', 'HanXRQChr09g0246851' => 'han', 'HanXRQChr10g0293311' => 'han', 'HanXRQChr13g0425231' => 'han', 'HanXRQChr16g0532571' => 'han', 'Haze_09050' => 'cav', 'Haze_15715' => 'cav', 'Haze_15716' => 'cav', 'Haze_16803' => 'cav', 'Haze_16850' => 'cav', 'Hma1.2p1_0301F.1_g118655' => 'hma', 'Hma1.2p1_0309F.1_g120590' => 'hma', 'Hma1.2p1_0936F.1_g238900' => 'hma', 'Hma1.2p1_3552F.1_g336740' => 'hma', 'HPP92_003520' => 'vpl', 'HPP92_006628' => 'vpl', 'HPP92_006645' => 'vpl', 'HPP92_014669' => 'vpl', 'HPP92_015077' => 'vpl', 'Hund16742' => 'sun', 'Hund17022' => 'sun', 'Lalb_Chr02g0152131' => 'lal', 'Lalb_Chr05g0225371' => 'lal', 'Lalb_Chr07g0189841' => 'lal', 'Lalb_Chr07g0192961' => 'lal', 'Lalb_Chr12g0208221' => 'lal', 'Lalb_Chr13g0291211' => 'lal', 'Lalb_Chr13g0291781' => 'lal', 'Lalb_Chr18g0044651' => 'lal', 'Lalb_Chr21g0313731' => 'lal', 'Lj1g0022533' => 'lja', 'Lj2A18T50' => 'lonja', 'Lj2A92G93' => 'lonja', 'Lj3A965T73' => 'lonja', 'Lj3g0000673' => 'lja', 'Lj3g0002666' => 'lja', 'Lj4g0016985' => 'lja', 'Lj5g0003625' => 'lja', 'Lj7A529G36' => 'lonja', 'Lj9A569T49' => 'lonja', 'Lj9A604T63' => 'lonja', 'Lsat_1_v5_gn_3_132060' => 'lsa', 'Lsat_1_v5_gn_4_68941' => 'lsa', 'Lsat_1_v5_gn_5_95580' => 'lsa', 'Lsat_1_v5_gn_7_161' => 'lsa', 'Lsat_1_v5_gn_7_7041' => 'lsa', 'Lsat_1_v5_gn_9_33481' => 'lsa', 'Lsat_1_v5_gn_9_68260' => 'lsa', 'Manes.01G073100' => 'mes', 'Manes.01G266300' => 'mes', 'Manes.02G033300' => 'mes', 'Manes.05G017900' => 'mes', 'Manes.05G046100' => 'mes', 'Manes.08G080900' => 'mes', 'Manes.10G049400' => 'mes', 'Mapoly0009s0186' => 'mpo', 'Mapoly0036s0118' => 'mpo', 'Mapoly0101s0046' => 'mpo', 'MBI04_g30218_MAGBIO' => 'mbi', 'MBI04_g35564_MAGBIO' => 'mbi', 'MBI12_g34011_MAGBIO' => 'mbi', 'MBI14_g04655_MAGBIO' => 'mbi', 'MCO07G653' => 'mco', 'MCO10G173' => 'mco', 'MD01G1087100' => 'mdo', 'MD01G1104200' => 'mdo', 'MD02G1205100' => 'mdo', 'MD04G1079200' => 'mdo', 'MD04G1131400' => 'mdo', 'MD07G1121600' => 'mdo', 'MD07G1157300' => 'mdo', 'MD07G1171000' => 'mdo', 'MD12G1144500' => 'mdo', 'Medtr1g094610' => 'mtr', 'Medtr4g021795' => 'mtr', 'Medtr4g023760' => 'mtr', 'Medtr7g118050' => 'mtr', 'MELO3C005582.2' => 'cme', 'MELO3C005989.2' => 'cme', 'MELO3C006192.2' => 'cme', 'MELO3C009248.2' => 'cme', 'MELO3C019817.2' => 'cme', 'Migut.B01625' => 'egut', 'Migut.B01915' => 'egut', 'Migut.F01721' => 'egut', 'Migut.J00314' => 'egut', 'MSTRG.20742' => 'ama', 'MSTRG.8134' => 'ama', 'Nitab4.5_0000096g0010' => 'nta', 'Nitab4.5_0000202g0030' => 'nta', 'Nitab4.5_0000216g0370' => 'nta', 'Nitab4.5_0000457g0230' => 'nta', 'Nitab4.5_0001702g0170' => 'nta', 'Nitab4.5_0003607g0010' => 'nta', 'Nitab4.5_0004917g0020' => 'nta', 'Nitab4.5_0007059g0010' => 'nta', 'Nitab4.5_0007184g0010' => 'nta', 'Nitab4.5_0007346g0020' => 'nta', 'Nn1g00410' => 'nnu', 'Nn1g01252' => 'nnu', 'Nn2g11168' => 'nnu', 'Nn2g13403' => 'nnu', 'Nn2g13760' => 'nnu', 'Nn4g26380' => 'nnu', 'Oeu000806.2' => 'oeu', 'Oeu005788.1' => 'oeu', 'Oeu006900.3' => 'oeu', 'Oeu007797.1' => 'oeu', 'Oeu011932.1' => 'oeu', 'Oeu022739.1' => 'oeu', 'Oeu037918.1' => 'oeu', 'Oeu055490.2' => 'oeu', 'Os01g0844400' => 'osa', 'Os02g0819100' => 'osa', 'Os03g0804300' => 'osa', 'Os05g0458000' => 'osa', 'Os07g0467800' => 'osa', 'Os12g0602200' => 'osa', 'Peaxi162Scf00013g03444' => 'pax', 'Peaxi162Scf00094g01120' => 'pax', 'Peaxi162Scf00191g01211' => 'pax', 'Peaxi162Scf00238g01110' => 'pax', 'Peaxi162Scf00330g00719' => 'pax', 'Peaxi162Scf00627g00018' => 'pax', 'PGR031G2686' => 'pgr', 'PGR042G0809' => 'pgr', 'PGR142G0193' => 'pgr', 'PGSC0003DMG400011066' => 'stu', 'PGSC0003DMG400012041' => 'stu', 'PGSC0003DMG400013678' => 'stu', 'PGSC0003DMG400023477' => 'stu', 'PGSC0003DMG400025956' => 'stu', 'PGSC0003DMG401019151' => 'stu', 'Phvul.006G116400' => 'pvu', 'Phvul.007G097300' => 'pvu', 'Phvul.010G015000' => 'pvu', 'Phvul.010G083900' => 'pvu', 'Potri.001G117100' => 'ptr', 'Potri.002G147300' => 'ptr', 'Potri.003G115600' => 'ptr', 'Potri.006G087400' => 'ptr', 'Potri.010G226100' => 'ptr', 'Potri.014G069200' => 'ptr', 'Potri.014G104000' => 'ptr', 'Potri.016G100200' => 'ptr', 'Pp3c10_20450' => 'ppa', 'Pp3c1_42400' => 'ppa', 'Pp3c3_24390' => 'ppa', 'Pp3c3_2860' => 'ppa', 'PRCOL_00003193' => 'pco', 'Prupe.2G144500' => 'ppe', 'Prupe.2G195700' => 'ppe', 'Prupe.2G209800' => 'ppe', 'Prupe.5G080000' => 'ppe', 'Prupe.6G257900' => 'ppe', 'Psat3g001160' => 'psa', 'Psat6g181880' => 'psa', 'Psat7g233720' => 'psa', 'PSO063G7587' => 'pso', 'PSO339G2145' => 'pso', 'PSO339G3369' => 'pso', 'PSO478G2747' => 'pso', 'PSO513G0140' => 'pso', 'PSO782G1614' => 'pso', 'PSO782G4889' => 'pso', 'PSO782G5485' => 'pso', 'PSO801G0241' => 'pso', 'QL07p048854' => 'qlo', 'QL08p046745' => 'qlo', 'QL08p052606' => 'qlo', 'QL08p053414' => 'qlo', 'QL08p054868' => 'qlo', 'RcHm_v2.0_Chr1g0350251' => 'rch', 'RcHm_v2.0_Chr1g0360851' => 'rch', 'RcHm_v2.0_Chr1g0362791' => 'rch', 'RcHm_v2.0_Chr3g0466281' => 'rch', 'RcHm_v2.0_Chr7g0201481' => 'rch', 'Rhsim01G0148600' => 'rsi', 'Rhsim05G0194400' => 'rsi', 'Rhsim07G0000700' => 'rsi', 'Rhsim07G0000800' => 'rsi', 'Rhsim07G0027900' => 'rsi', 'Rhsim09G0149500' => 'rsi', 'RhsimUnG0186900' => 'rsi', 'Sabra01G0089900' => 'sbr', 'Sabra02G0114700' => 'sbr', 'Sabra02G0116300' => 'sbr', 'Sabra03G0080100' => 'sbr', 'Sabra08G0024300' => 'sbr', 'Sabra10G0174300' => 'sbr', 'Sabra14G0048900' => 'sbr', 'Sabra14G0076500' => 'sbr', 'SalBow5G2513' => 'sbo', 'Sc01g0002300' => 'sci', 'Sc01g0004450' => 'sci', 'Sc06g0001680' => 'sci', 'Sc23g0003580' => 'sci', 'Sed0000913' => 'sed', 'Sed0001655' => 'sed', 'Sed0007745' => 'sed', 'Sed0010951' => 'sed', 'Sed0017599' => 'sed', 'Sed0021405' => 'sed', 'Sed0022810' => 'sed', 'SEGI_07099' => 'sgi', 'SEGI_11931' => 'sgi', 'SEGI_13187' => 'sgi', 'SEGI_29958' => 'sgi', 'SEGI_36351' => 'sgi', 'SGA_v2.0_scaffold126G33770' => 'sas', 'SGA_v2.0_scaffold153G37003' => 'sas', 'SGA_v2.0_scaffold2G01359' => 'sas', 'SGA_v2.0_scaffold5G03064' => 'sas', 'SGA_v2.0_scaffold95G28903' => 'sas', 'SHI12701' => 'shi', 'SHI26410' => 'shi', 'SHI38997' => 'shi', 'SHI53759' => 'shi', 'SHI53886' => 'shi', 'SHI54714' => 'shi', 'SMO011G0041' => 'smo', 'SMO146G0251' => 'smo', 'SMO160G0004' => 'smo', 'SMO174G0057' => 'smo', 'SMO244G0089' => 'smo', 'SMO296G0011' => 'smo', 'Solyc01g091280.3' => 'sly', 'Solyc05g047610.3' => 'sly', 'Solyc05g047640.3' => 'sly', 'Solyc05g055630.3' => 'sly', 'Solyc10g018160.2' => 'sly', 'Solyc10g084820.2' => 'sly', 'Solyc10g086565.2' => 'sly', 'Sopen01g037030' => 'spe', 'Sopen05g027920' => 'spe', 'Sopen05g034070' => 'spe', 'Sopen10g007260' => 'spe', 'Sopen10g034260' => 'spe', 'Sopen10g035950' => 'spe', 'Sp3g07710' => 'spa', 'Sp4g27420' => 'spa', 'Sp5g02450' => 'spa', 'Sp6g01280' => 'spa', 'Sp6g38480' => 'spa', 'Sp7g20780' => 'spa', 'TAR374G1413' => 'tar', 'TAR623G1777' => 'tar', 'TAR629G2370' => 'tar', 'TAR633G1759' => 'tar', 'TAR636G3387' => 'tar', 'THA.LOC104802447' => 'tha', 'THA.LOC104813916' => 'tha', 'THA.LOC104816423' => 'tha', 'THA.LOC104817246' => 'tha', 'THA.LOC104825895' => 'tha', 'Thecc.01G335200' => 'tca', 'Thecc.01G377400' => 'tca', 'Thecc.03G262200' => 'tca', 'Thecc.05G036800' => 'tca', 'Thecc.10G080500' => 'tca', 'Thecc.10G080800' => 'tca', 'Thhalv10001560m.g' => 'esa', 'Thhalv10006120m.g' => 'esa', 'Thhalv10014375m.g' => 'esa', 'Thhalv10021264m.g' => 'esa', 'Thhalv10028856m.g' => 'esa', 'TPR.G1914' => 'tpr', 'TPR.G4757' => 'tpr', 'TPR.G5595' => 'tpr', 'TWI14G0952' => 'twi', 'TWI14G1307' => 'twi', 'TWI38G2143' => 'twi', 'TWI59G0826' => 'twi', 'TWI77G0527' => 'twi', 'TWI81G0150' => 'twi', 'unitig_21.g21018' => 'ugi', 'unitig_26.g9725' => 'ugi', 'unitig_744.g24653' => 'ugi', 'unitig_749.g13778' => 'ugi', 'unitig_899.g15035' => 'ugi', 'vmacro04296' => 'vma', 'vmacro04852' => 'vma', 'vmacro13404' => 'vma', 'vmacro20169' => 'vma', 'vmacro21014' => 'vma', 'VMungo0331G0237' => 'vmu', 'VMungo0331G0706' => 'vmu', 'VMungo0331G1361' => 'vmu', 'VMungo0331G1489' => 'vmu', 'VMungo0540G1037' => 'vmu', 'VMungo0720G2487' => 'vmu', 'VMungo0720G2721' => 'vmu', 'Zm00001eb086860' => 'zma', 'Zm00001eb104760' => 'zma', 'Zm00001eb148220' => 'zma', 'Zm00001eb259030' => 'zma', 'Zm00001eb289590' => 'zma', 'Zm00001eb420150' => 'zma' ) $gf_id = 'HOM05D000968' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000968' ) $data_identifier = 'HOM05D000968' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 19, 'bol' => (int) 9, 'bra' => (int) 12, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 5, 'ccan' => (int) 7, 'cde' => (int) 5, 'cfa' => (int) 8, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 4, 'dca' => (int) 5, 'din' => (int) 5, 'dzi' => (int) 12, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 25, 'fve' => (int) 5, 'gma' => (int) 9, 'ghi' => (int) 18, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 7, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 5, 'sun' => (int) 2, 'lal' => (int) 9, 'lja' => (int) 5, 'lonja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 9, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 2, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 3, 'stu' => (int) 6, 'pvu' => (int) 4, 'ptr' => (int) 8, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 3, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 1, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 5, 'sas' => (int) 5, 'shi' => (int) 6, 'smo' => (int) 6, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 3, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420150' $species_info = array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ) $local_species = 'lsa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000968', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p31690' => 'bna', 'A03p36040' => 'bna', 'A03p53730' => 'bna', 'A04p01410' => 'bna', 'A05p05420' => 'bna', 'A05p39630' => 'bna', 'A05p39640' => 'bna', 'A09p00970' => 'bna', 'A09p53060' => 'bna', 'A10p31890' => 'bna', 'Aa31LG10G15040' => 'aar', 'Aa31LG1G21090' => 'aar', 'Aa31LG1G26900' => 'aar', 'Aa31LG3G1820' => 'aar', 'Aa31LG5G1100' => 'aar', 'Aa31LG6G4740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2265' => 'aag', 'Actinidia07998' => 'ach', 'Actinidia11266' => 'ach', 'Actinidia12682' => 'ach', 'Actinidia26479' => 'ach', 'Actinidia31406' => 'ach', 'Actinidia32437' => 'ach', 'Actinidia38862' => 'ach', 'Ah.05g174230' => 'amhyb', 'Ah.05g179070' => 'amhyb', 'Ah.05g179090' => 'amhyb', 'Ah.12g059950' => 'amhyb', 'AL3G20480' => 'aly', 'AL4G44520' => 'aly', 'AL5G43110' => 'aly', 'AL6G13890' => 'aly', 'AL6G52620' => 'aly', 'AL7G30830' => 'aly', 'Aqoxy1G00899' => 'aox', 'Aqoxy5G04333' => 'aox', 'Aqoxy7G00641' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3IZ0NN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4EF6AW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W9P8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79GA3M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C43NQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFCU6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G95YVJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCHK29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LU1UG8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX91RN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGB4B1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8DA0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9H7JI' => 'arhy', 'AT3G09320' => 'ath', 'AT3G60800' => 'ath', 'AT4G00840' => 'ath', 'AT4G22750' => 'ath', 'AT5G04270' => 'ath', 'ATR0090G003' => 'atr', 'ATR0559G349' => 'atr', 'ATR0680G261' => 'atr', 'ATR0810G048' => 'atr', 'Atru.chr12.831' => 'acertr', 'Atru.chr5.303' => 'acertr', 'Atru.chr5.748' => 'acertr', 'Atru.chr8.1999' => 'acertr', 'Atru.chr9.1436' => 'acertr', 'AUR62004211' => 'cqu', 'AUR62004548' => 'cqu', 'AUR62013637' => 'cqu', 'AUR62022662' => 'cqu', 'AUR62025777' => 'cqu', 'AUR62042386' => 'cqu', 'BcaB01g02310' => 'bca', 'BcaB01g06062' => 'bca', 'BcaB02g08975' => 'bca', 'BcaB02g08980' => 'bca', 'BcaC01g04228' => 'bca', 'BcaC01g06830' => 'bca', 'BcaC02g10186' => 'bca', 'BcaC02g12214' => 'bca', 'BcaC04g24101' => 'bca', 'BcaC05g29520' => 'bca', 'BcaC05g29661' => 'bca', 'BcaC06g32130' => 'bca', 'BcaC06g32131' => 'bca', 'BcaC07g40601' => 'bca', 'BcaC07g42641' => 'bca', 'BcaNung01038' => 'bca', 'BcaNung01676' => 'bca', 'BcaNung02480' => 'bca', 'BcaNung07376' => 'bca', 'BolC3t16146H' => 'bol', 'BolC3t16637H' => 'bol', 'BolC4t22257H' => 'bol', 'BolC4t24728H' => 'bol', 'BolC5t34517H' => 'bol', 'BolC7t45703H' => 'bol', 'BolC8t51166H' => 'bol', 'BolC9t53038H' => 'bol', 'BolC9t60000H' => 'bol', 'BraA01t01345Z' => 'bra', 'BraA01t01346Z' => 'bra', 'BraA01t01348Z' => 'bra', 'BraA03t12347Z' => 'bra', 'BraA03t12775Z' => 'bra', 'BraA03t14439Z' => 'bra', 'BraA04t15860Z' => 'bra', 'BraA05t19511Z' => 'bra', 'BraA05t22746Z' => 'bra', 'BraA09t35767Z' => 'bra', 'BraA09t40732Z' => 'bra', 'BraA10t45233Z' => 'bra', 'C03p38720' => 'bna', 'C03p43680' => 'bna', 'C04p06350' => 'bna', 'C04p31800' => 'bna', 'C05p58680' => 'bna', 'C07p52110' => 'bna', 'C08p35760' => 'bna', 'C09p01050' => 'bna', 'C09p72600' => 'bna', 'CAN.G106.2' => 'can', 'CAN.G1482.1' => 'can', 'CAN.G324.12' => 'can', 'CAN.G388.20' => 'can', 'CAN.G412.7' => 'can', 'CAN.G694.32' => 'can', 'CAN.G92.12' => 'can', 'CANSAT11G2353' => 'cansat', 'CANSAT21G1398' => 'cansat', 'CANSAT56G2456' => 'cansat', 'CANSAT56G3031' => 'cansat', 'CANSAT56G4539' => 'cansat', 'CARHR083680' => 'chi', 'CARHR171190' => 'chi', 'CARHR209010' => 'chi', 'CARHR229680' => 'chi', 'CARHR249490' => 'chi', 'Carub.0003s0844' => 'cru', 'Carub.0005s2755' => 'cru', 'Carub.0006s0322' => 'cru', 'Carub.0006s3586' => 'cru', 'Carub.0007s1855' => 'cru', 'Ca_07808_v3' => 'car', 'Ca_09535_v3' => 'car', 'Ca_10548_v3' => 'car', 'Ca_19913_v3' => 'car', 'Ca_19916_v3' => 'car', 'Ca_19975_v3' => 'car', 'CBR_g22876' => 'cbr', 'CBR_g22879' => 'cbr', 'CBR_g38491' => 'cbr', 'CBR_g54185' => 'cbr', 'CBR_g54190' => 'cbr', 'Cc02_g11020' => 'ccan', 'Cc02_g23920' => 'ccan', 'Cc02_g39860' => 'ccan', 'Cc02_g39870' => 'ccan', 'Cc03_g06760' => 'ccan', 'Cc06_g02450' => 'ccan', 'Cc09_g09450' => 'ccan', 'CDE02G1959' => 'cde', 'CDE04G0600' => 'cde', 'CDE07G1996' => 'cde', 'CDE07G2078' => 'cde', 'CDE11G0611' => 'cde', 'Cfa001683' => 'cfa', 'Cfa001734' => 'cfa', 'Cfa001737' => 'cfa', 'Cfa003751' => 'cfa', 'Cfa012019' => 'cfa', 'Cfa017353' => 'cfa', 'Cfa017732' => 'cfa', 'Cfa022464' => 'cfa', 'Ciclev10012400m.g' => 'ccl', 'Ciclev10021242m.g' => 'ccl', 'Ciclev10021302m.g' => 'ccl', 'Ciclev10021463m.g' => 'ccl', 'Ciclev10032359m.g' => 'ccl', 'CiPaw.01G081000' => 'cil', 'CiPaw.01G262500' => 'cil', 'CiPaw.01G269800' => 'cil', 'CiPaw.02G168400' => 'cil', 'CiPaw.05G119500' => 'cil', 'CiPaw.11G147300' => 'cil', 'ClCG01G003630' => 'cla', 'ClCG05G000510' => 'cla', 'ClCG05G002300' => 'cla', 'ClCG08G007650' => 'cla', 'ClCG10G021250' => 'cla', 'COL.COLO4_06218' => 'col', 'COL.COLO4_12538' => 'col', 'COL.COLO4_14775' => 'col', 'COL.COLO4_23875' => 'col', 'Cpa.g.sc141.16' => 'cpa', 'Cpa.g.sc169.16' => 'cpa', 'Cpa.g.sc244.4' => 'cpa', 'Cpa.g.sc244.5' => 'cpa', 'Cpa.g.sc29.87' => 'cpa', 'Cpa.g.sc53.115' => 'cpa', 'Cre03.g207502' => 'cre', 'Cre06.g277000' => 'cre', 'Cre09.g394050' => 'cre', 'CsaV3_3G007680' => 'csa', 'CsaV3_3G009710' => 'csa', 'CsaV3_3G034790' => 'csa', 'CsaV3_5G003750' => 'csa', 'CsaV3_6G036620' => 'csa', 'CSS0002288' => 'camsi', 'CSS0011250' => 'camsi', 'CSS0021619' => 'camsi', 'CSS0046701' => 'camsi', 'DCAR_006420' => 'dca', 'DCAR_006865' => 'dca', 'DCAR_008558' => 'dca', 'DCAR_028754' => 'dca', 'DCAR_028755' => 'dca', 'Dinv31218' => 'din', 'Dinv32371' => 'din', 'Dinv34250' => 'din', 'Dinv37156' => 'din', 'Dinv43704' => 'din', 'Duzib093G1811' => 'dzi', 'Duzib106G1622' => 'dzi', 'Duzib114G0504' => 'dzi', 'Duzib128G0338' => 'dzi', 'Duzib128G1577' => 'dzi', 'Duzib133G0104' => 'dzi', 'Duzib133G1080' => 'dzi', 'Duzib138G0324' => 'dzi', 'Duzib138G0394' => 'dzi', 'Duzib205G0122' => 'dzi', 'Duzib268G1020' => 'dzi', 'Duzib268G1359' => 'dzi', 'ECA232G3929' => 'eca', 'ECA236G2210' => 'eca', 'ECA236G2287' => 'eca', 'ECA240G4568' => 'eca', 'ECA247G0894' => 'eca', 'EL10Ac1g00200' => 'bvu', 'EL10Ac1g00886' => 'bvu', 'EL10As1g23091' => 'bvu', 'EL10As1g23092' => 'bvu', 'Eucgr.A01284' => 'egr', 'Eucgr.A01285' => 'egr', 'Eucgr.D02456' => 'egr', 'Eucgr.E00018' => 'egr', 'Eucgr.E01439' => 'egr', 'Eucgr.G02859' => 'egr', 'FAN01G0168' => 'fan', 'FAN01G0453' => 'fan', 'FAN01G2761' => 'fan', 'FAN02G1239' => 'fan', 'FAN03G0645' => 'fan', 'FAN03G2707' => 'fan', 'FAN03G2978' => 'fan', 'FAN04G0227' => 'fan', 'FAN06G0091' => 'fan', 'FAN06G1418' => 'fan', 'FAN06G1512' => 'fan', 'FAN06G1986' => 'fan', 'FAN06G2905' => 'fan', 'FAN06G4325' => 'fan', 'FAN08G0033' => 'fan', 'FAN09G0642' => 'fan', 'FAN10G1763' => 'fan', 'FAN10G2026' => 'fan', 'FAN10G2513' => 'fan', 'FAN10G3402' => 'fan', 'FAN10G3564' => 'fan', 'FAN10G3987' => 'fan', 'FAN13G1490' => 'fan', 'FAN14G5857' => 'fan', 'FAN18G1188' => 'fan', 'FvH4_5g00750' => 'fve', 'FvH4_6g13410' => 'fve', 'FvH4_7g11740' => 'fve', 'FvH4_7g17410' => 'fve', 'FvH4_7g18860' => 'fve', 'Glyma.01G099100' => 'gma', 'Glyma.01G142300' => 'gma', 'Glyma.03G025500' => 'gma', 'Glyma.03G069700' => 'gma', 'Glyma.03G260000' => 'gma', 'Glyma.09G269800' => 'gma', 'Glyma.10G208700' => 'gma', 'Glyma.18G220400' => 'gma', 'Glyma.20G182000' => 'gma', 'Gohir.A01G221726' => 'ghi', 'Gohir.A07G134600' => 'ghi', 'Gohir.A07G146000' => 'ghi', 'Gohir.A08G173900' => 'ghi', 'Gohir.A09G194900' => 'ghi', 'Gohir.A10G204100' => 'ghi', 'Gohir.A11G080600' => 'ghi', 'Gohir.A11G327500' => 'ghi', 'Gohir.A12G101800' => 'ghi', 'Gohir.D01G211200' => 'ghi', 'Gohir.D07G139200' => 'ghi', 'Gohir.D07G152100' => 'ghi', 'Gohir.D08G192600' => 'ghi', 'Gohir.D09G189200' => 'ghi', 'Gohir.D10G212000' => 'ghi', 'Gohir.D11G085200' => 'ghi', 'Gohir.D11G346400' => 'ghi', 'Gohir.D12G104800' => 'ghi', 'Gorai.001G151300' => 'gra', 'Gorai.001G174100' => 'gra', 'Gorai.002G257000' => 'gra', 'Gorai.004G202600' => 'gra', 'Gorai.007G090900' => 'gra', 'Gorai.007G376700' => 'gra', 'Gorai.008G114100' => 'gra', 'Gorai.011G237900' => 'gra', 'GSVIVG01005450001' => 'vvi', 'GSVIVG01016232001' => 'vvi', 'GSVIVG01026157001' => 'vvi', 'GSVIVG01027419001' => 'vvi', 'GSVIVG01027631001' => 'vvi', 'GSVIVG01034143001' => 'vvi', 'HanXRQChr03g0093921' => 'han', 'HanXRQChr04g0120001' => 'han', 'HanXRQChr04g0122561' => 'han', 'HanXRQChr09g0246851' => 'han', 'HanXRQChr10g0293311' => 'han', 'HanXRQChr13g0425231' => 'han', 'HanXRQChr16g0532571' => 'han', 'Haze_09050' => 'cav', 'Haze_15715' => 'cav', 'Haze_15716' => 'cav', 'Haze_16803' => 'cav', 'Haze_16850' => 'cav', 'Hma1.2p1_0301F.1_g118655' => 'hma', 'Hma1.2p1_0309F.1_g120590' => 'hma', 'Hma1.2p1_0936F.1_g238900' => 'hma', 'Hma1.2p1_3552F.1_g336740' => 'hma', 'HPP92_003520' => 'vpl', 'HPP92_006628' => 'vpl', 'HPP92_006645' => 'vpl', 'HPP92_014669' => 'vpl', 'HPP92_015077' => 'vpl', 'Hund16742' => 'sun', 'Hund17022' => 'sun', 'Lalb_Chr02g0152131' => 'lal', 'Lalb_Chr05g0225371' => 'lal', 'Lalb_Chr07g0189841' => 'lal', 'Lalb_Chr07g0192961' => 'lal', 'Lalb_Chr12g0208221' => 'lal', 'Lalb_Chr13g0291211' => 'lal', 'Lalb_Chr13g0291781' => 'lal', 'Lalb_Chr18g0044651' => 'lal', 'Lalb_Chr21g0313731' => 'lal', 'Lj1g0022533' => 'lja', 'Lj2A18T50' => 'lonja', 'Lj2A92G93' => 'lonja', 'Lj3A965T73' => 'lonja', 'Lj3g0000673' => 'lja', 'Lj3g0002666' => 'lja', 'Lj4g0016985' => 'lja', 'Lj5g0003625' => 'lja', 'Lj7A529G36' => 'lonja', 'Lj9A569T49' => 'lonja', 'Lj9A604T63' => 'lonja', 'Lsat_1_v5_gn_3_132060' => 'lsa', 'Lsat_1_v5_gn_4_68941' => 'lsa', 'Lsat_1_v5_gn_5_95580' => 'lsa', 'Lsat_1_v5_gn_7_161' => 'lsa', 'Lsat_1_v5_gn_7_7041' => 'lsa', 'Lsat_1_v5_gn_9_33481' => 'lsa', 'Lsat_1_v5_gn_9_68260' => 'lsa', 'Manes.01G073100' => 'mes', 'Manes.01G266300' => 'mes', 'Manes.02G033300' => 'mes', 'Manes.05G017900' => 'mes', 'Manes.05G046100' => 'mes', 'Manes.08G080900' => 'mes', 'Manes.10G049400' => 'mes', 'Mapoly0009s0186' => 'mpo', 'Mapoly0036s0118' => 'mpo', 'Mapoly0101s0046' => 'mpo', 'MBI04_g30218_MAGBIO' => 'mbi', 'MBI04_g35564_MAGBIO' => 'mbi', 'MBI12_g34011_MAGBIO' => 'mbi', 'MBI14_g04655_MAGBIO' => 'mbi', 'MCO07G653' => 'mco', 'MCO10G173' => 'mco', 'MD01G1087100' => 'mdo', 'MD01G1104200' => 'mdo', 'MD02G1205100' => 'mdo', 'MD04G1079200' => 'mdo', 'MD04G1131400' => 'mdo', 'MD07G1121600' => 'mdo', 'MD07G1157300' => 'mdo', 'MD07G1171000' => 'mdo', 'MD12G1144500' => 'mdo', 'Medtr1g094610' => 'mtr', 'Medtr4g021795' => 'mtr', 'Medtr4g023760' => 'mtr', 'Medtr7g118050' => 'mtr', 'MELO3C005582.2' => 'cme', 'MELO3C005989.2' => 'cme', 'MELO3C006192.2' => 'cme', 'MELO3C009248.2' => 'cme', 'MELO3C019817.2' => 'cme', 'Migut.B01625' => 'egut', 'Migut.B01915' => 'egut', 'Migut.F01721' => 'egut', 'Migut.J00314' => 'egut', 'MSTRG.20742' => 'ama', 'MSTRG.8134' => 'ama', 'Nitab4.5_0000096g0010' => 'nta', 'Nitab4.5_0000202g0030' => 'nta', 'Nitab4.5_0000216g0370' => 'nta', 'Nitab4.5_0000457g0230' => 'nta', 'Nitab4.5_0001702g0170' => 'nta', 'Nitab4.5_0003607g0010' => 'nta', 'Nitab4.5_0004917g0020' => 'nta', 'Nitab4.5_0007059g0010' => 'nta', 'Nitab4.5_0007184g0010' => 'nta', 'Nitab4.5_0007346g0020' => 'nta', 'Nn1g00410' => 'nnu', 'Nn1g01252' => 'nnu', 'Nn2g11168' => 'nnu', 'Nn2g13403' => 'nnu', 'Nn2g13760' => 'nnu', 'Nn4g26380' => 'nnu', 'Oeu000806.2' => 'oeu', 'Oeu005788.1' => 'oeu', 'Oeu006900.3' => 'oeu', 'Oeu007797.1' => 'oeu', 'Oeu011932.1' => 'oeu', 'Oeu022739.1' => 'oeu', 'Oeu037918.1' => 'oeu', 'Oeu055490.2' => 'oeu', 'Os01g0844400' => 'osa', 'Os02g0819100' => 'osa', 'Os03g0804300' => 'osa', 'Os05g0458000' => 'osa', 'Os07g0467800' => 'osa', 'Os12g0602200' => 'osa', 'Peaxi162Scf00013g03444' => 'pax', 'Peaxi162Scf00094g01120' => 'pax', 'Peaxi162Scf00191g01211' => 'pax', 'Peaxi162Scf00238g01110' => 'pax', 'Peaxi162Scf00330g00719' => 'pax', 'Peaxi162Scf00627g00018' => 'pax', 'PGR031G2686' => 'pgr', 'PGR042G0809' => 'pgr', 'PGR142G0193' => 'pgr', 'PGSC0003DMG400011066' => 'stu', 'PGSC0003DMG400012041' => 'stu', 'PGSC0003DMG400013678' => 'stu', 'PGSC0003DMG400023477' => 'stu', 'PGSC0003DMG400025956' => 'stu', 'PGSC0003DMG401019151' => 'stu', 'Phvul.006G116400' => 'pvu', 'Phvul.007G097300' => 'pvu', 'Phvul.010G015000' => 'pvu', 'Phvul.010G083900' => 'pvu', 'Potri.001G117100' => 'ptr', 'Potri.002G147300' => 'ptr', 'Potri.003G115600' => 'ptr', 'Potri.006G087400' => 'ptr', 'Potri.010G226100' => 'ptr', 'Potri.014G069200' => 'ptr', 'Potri.014G104000' => 'ptr', 'Potri.016G100200' => 'ptr', 'Pp3c10_20450' => 'ppa', 'Pp3c1_42400' => 'ppa', 'Pp3c3_24390' => 'ppa', 'Pp3c3_2860' => 'ppa', 'PRCOL_00003193' => 'pco', 'Prupe.2G144500' => 'ppe', 'Prupe.2G195700' => 'ppe', 'Prupe.2G209800' => 'ppe', 'Prupe.5G080000' => 'ppe', 'Prupe.6G257900' => 'ppe', 'Psat3g001160' => 'psa', 'Psat6g181880' => 'psa', 'Psat7g233720' => 'psa', 'PSO063G7587' => 'pso', 'PSO339G2145' => 'pso', 'PSO339G3369' => 'pso', 'PSO478G2747' => 'pso', 'PSO513G0140' => 'pso', 'PSO782G1614' => 'pso', 'PSO782G4889' => 'pso', 'PSO782G5485' => 'pso', 'PSO801G0241' => 'pso', 'QL07p048854' => 'qlo', 'QL08p046745' => 'qlo', 'QL08p052606' => 'qlo', 'QL08p053414' => 'qlo', 'QL08p054868' => 'qlo', 'RcHm_v2.0_Chr1g0350251' => 'rch', 'RcHm_v2.0_Chr1g0360851' => 'rch', 'RcHm_v2.0_Chr1g0362791' => 'rch', 'RcHm_v2.0_Chr3g0466281' => 'rch', 'RcHm_v2.0_Chr7g0201481' => 'rch', 'Rhsim01G0148600' => 'rsi', 'Rhsim05G0194400' => 'rsi', 'Rhsim07G0000700' => 'rsi', 'Rhsim07G0000800' => 'rsi', 'Rhsim07G0027900' => 'rsi', 'Rhsim09G0149500' => 'rsi', 'RhsimUnG0186900' => 'rsi', 'Sabra01G0089900' => 'sbr', 'Sabra02G0114700' => 'sbr', 'Sabra02G0116300' => 'sbr', 'Sabra03G0080100' => 'sbr', 'Sabra08G0024300' => 'sbr', 'Sabra10G0174300' => 'sbr', 'Sabra14G0048900' => 'sbr', 'Sabra14G0076500' => 'sbr', 'SalBow5G2513' => 'sbo', 'Sc01g0002300' => 'sci', 'Sc01g0004450' => 'sci', 'Sc06g0001680' => 'sci', 'Sc23g0003580' => 'sci', 'Sed0000913' => 'sed', 'Sed0001655' => 'sed', 'Sed0007745' => 'sed', 'Sed0010951' => 'sed', 'Sed0017599' => 'sed', 'Sed0021405' => 'sed', 'Sed0022810' => 'sed', 'SEGI_07099' => 'sgi', 'SEGI_11931' => 'sgi', 'SEGI_13187' => 'sgi', 'SEGI_29958' => 'sgi', 'SEGI_36351' => 'sgi', 'SGA_v2.0_scaffold126G33770' => 'sas', 'SGA_v2.0_scaffold153G37003' => 'sas', 'SGA_v2.0_scaffold2G01359' => 'sas', 'SGA_v2.0_scaffold5G03064' => 'sas', 'SGA_v2.0_scaffold95G28903' => 'sas', 'SHI12701' => 'shi', 'SHI26410' => 'shi', 'SHI38997' => 'shi', 'SHI53759' => 'shi', 'SHI53886' => 'shi', 'SHI54714' => 'shi', 'SMO011G0041' => 'smo', 'SMO146G0251' => 'smo', 'SMO160G0004' => 'smo', 'SMO174G0057' => 'smo', 'SMO244G0089' => 'smo', 'SMO296G0011' => 'smo', 'Solyc01g091280.3' => 'sly', 'Solyc05g047610.3' => 'sly', 'Solyc05g047640.3' => 'sly', 'Solyc05g055630.3' => 'sly', 'Solyc10g018160.2' => 'sly', 'Solyc10g084820.2' => 'sly', 'Solyc10g086565.2' => 'sly', 'Sopen01g037030' => 'spe', 'Sopen05g027920' => 'spe', 'Sopen05g034070' => 'spe', 'Sopen10g007260' => 'spe', 'Sopen10g034260' => 'spe', 'Sopen10g035950' => 'spe', 'Sp3g07710' => 'spa', 'Sp4g27420' => 'spa', 'Sp5g02450' => 'spa', 'Sp6g01280' => 'spa', 'Sp6g38480' => 'spa', 'Sp7g20780' => 'spa', 'TAR374G1413' => 'tar', 'TAR623G1777' => 'tar', 'TAR629G2370' => 'tar', 'TAR633G1759' => 'tar', 'TAR636G3387' => 'tar', 'THA.LOC104802447' => 'tha', 'THA.LOC104813916' => 'tha', 'THA.LOC104816423' => 'tha', 'THA.LOC104817246' => 'tha', 'THA.LOC104825895' => 'tha', 'Thecc.01G335200' => 'tca', 'Thecc.01G377400' => 'tca', 'Thecc.03G262200' => 'tca', 'Thecc.05G036800' => 'tca', 'Thecc.10G080500' => 'tca', 'Thecc.10G080800' => 'tca', 'Thhalv10001560m.g' => 'esa', 'Thhalv10006120m.g' => 'esa', 'Thhalv10014375m.g' => 'esa', 'Thhalv10021264m.g' => 'esa', 'Thhalv10028856m.g' => 'esa', 'TPR.G1914' => 'tpr', 'TPR.G4757' => 'tpr', 'TPR.G5595' => 'tpr', 'TWI14G0952' => 'twi', 'TWI14G1307' => 'twi', 'TWI38G2143' => 'twi', 'TWI59G0826' => 'twi', 'TWI77G0527' => 'twi', 'TWI81G0150' => 'twi', 'unitig_21.g21018' => 'ugi', 'unitig_26.g9725' => 'ugi', 'unitig_744.g24653' => 'ugi', 'unitig_749.g13778' => 'ugi', 'unitig_899.g15035' => 'ugi', 'vmacro04296' => 'vma', 'vmacro04852' => 'vma', 'vmacro13404' => 'vma', 'vmacro20169' => 'vma', 'vmacro21014' => 'vma', 'VMungo0331G0237' => 'vmu', 'VMungo0331G0706' => 'vmu', 'VMungo0331G1361' => 'vmu', 'VMungo0331G1489' => 'vmu', 'VMungo0540G1037' => 'vmu', 'VMungo0720G2487' => 'vmu', 'VMungo0720G2721' => 'vmu', 'Zm00001eb086860' => 'zma', 'Zm00001eb104760' => 'zma', 'Zm00001eb148220' => 'zma', 'Zm00001eb259030' => 'zma', 'Zm00001eb289590' => 'zma', 'Zm00001eb420150' => 'zma' ), 'gf_id' => 'HOM05D000968', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000968' ), 'data_identifier' => 'HOM05D000968', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000968', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p31690' => 'bna', 'A03p36040' => 'bna', 'A03p53730' => 'bna', 'A04p01410' => 'bna', 'A05p05420' => 'bna', 'A05p39630' => 'bna', 'A05p39640' => 'bna', 'A09p00970' => 'bna', 'A09p53060' => 'bna', 'A10p31890' => 'bna', 'Aa31LG10G15040' => 'aar', 'Aa31LG1G21090' => 'aar', 'Aa31LG1G26900' => 'aar', 'Aa31LG3G1820' => 'aar', 'Aa31LG5G1100' => 'aar', 'Aa31LG6G4740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2265' => 'aag', 'Actinidia07998' => 'ach', 'Actinidia11266' => 'ach', 'Actinidia12682' => 'ach', 'Actinidia26479' => 'ach', 'Actinidia31406' => 'ach', 'Actinidia32437' => 'ach', 'Actinidia38862' => 'ach', 'Ah.05g174230' => 'amhyb', 'Ah.05g179070' => 'amhyb', 'Ah.05g179090' => 'amhyb', 'Ah.12g059950' => 'amhyb', 'AL3G20480' => 'aly', 'AL4G44520' => 'aly', 'AL5G43110' => 'aly', 'AL6G13890' => 'aly', 'AL6G52620' => 'aly', 'AL7G30830' => 'aly', 'Aqoxy1G00899' => 'aox', 'Aqoxy5G04333' => 'aox', 'Aqoxy7G00641' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3IZ0NN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4EF6AW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W9P8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79GA3M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C43NQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFCU6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G95YVJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCHK29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LU1UG8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX91RN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGB4B1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8DA0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9H7JI' => 'arhy', 'AT3G09320' => 'ath', 'AT3G60800' => 'ath', 'AT4G00840' => 'ath', 'AT4G22750' => 'ath', 'AT5G04270' => 'ath', 'ATR0090G003' => 'atr', 'ATR0559G349' => 'atr', 'ATR0680G261' => 'atr', 'ATR0810G048' => 'atr', 'Atru.chr12.831' => 'acertr', 'Atru.chr5.303' => 'acertr', 'Atru.chr5.748' => 'acertr', 'Atru.chr8.1999' => 'acertr', 'Atru.chr9.1436' => 'acertr', 'AUR62004211' => 'cqu', 'AUR62004548' => 'cqu', 'AUR62013637' => 'cqu', 'AUR62022662' => 'cqu', 'AUR62025777' => 'cqu', 'AUR62042386' => 'cqu', 'BcaB01g02310' => 'bca', 'BcaB01g06062' => 'bca', 'BcaB02g08975' => 'bca', 'BcaB02g08980' => 'bca', 'BcaC01g04228' => 'bca', 'BcaC01g06830' => 'bca', 'BcaC02g10186' => 'bca', 'BcaC02g12214' => 'bca', 'BcaC04g24101' => 'bca', 'BcaC05g29520' => 'bca', 'BcaC05g29661' => 'bca', 'BcaC06g32130' => 'bca', 'BcaC06g32131' => 'bca', 'BcaC07g40601' => 'bca', 'BcaC07g42641' => 'bca', 'BcaNung01038' => 'bca', 'BcaNung01676' => 'bca', 'BcaNung02480' => 'bca', 'BcaNung07376' => 'bca', 'BolC3t16146H' => 'bol', 'BolC3t16637H' => 'bol', 'BolC4t22257H' => 'bol', 'BolC4t24728H' => 'bol', 'BolC5t34517H' => 'bol', 'BolC7t45703H' => 'bol', 'BolC8t51166H' => 'bol', 'BolC9t53038H' => 'bol', 'BolC9t60000H' => 'bol', 'BraA01t01345Z' => 'bra', 'BraA01t01346Z' => 'bra', 'BraA01t01348Z' => 'bra', 'BraA03t12347Z' => 'bra', 'BraA03t12775Z' => 'bra', 'BraA03t14439Z' => 'bra', 'BraA04t15860Z' => 'bra', 'BraA05t19511Z' => 'bra', 'BraA05t22746Z' => 'bra', 'BraA09t35767Z' => 'bra', 'BraA09t40732Z' => 'bra', 'BraA10t45233Z' => 'bra', 'C03p38720' => 'bna', 'C03p43680' => 'bna', 'C04p06350' => 'bna', 'C04p31800' => 'bna', 'C05p58680' => 'bna', 'C07p52110' => 'bna', 'C08p35760' => 'bna', 'C09p01050' => 'bna', 'C09p72600' => 'bna', 'CAN.G106.2' => 'can', 'CAN.G1482.1' => 'can', 'CAN.G324.12' => 'can', 'CAN.G388.20' => 'can', 'CAN.G412.7' => 'can', 'CAN.G694.32' => 'can', 'CAN.G92.12' => 'can', 'CANSAT11G2353' => 'cansat', 'CANSAT21G1398' => 'cansat', 'CANSAT56G2456' => 'cansat', 'CANSAT56G3031' => 'cansat', 'CANSAT56G4539' => 'cansat', 'CARHR083680' => 'chi', 'CARHR171190' => 'chi', 'CARHR209010' => 'chi', 'CARHR229680' => 'chi', 'CARHR249490' => 'chi', 'Carub.0003s0844' => 'cru', 'Carub.0005s2755' => 'cru', 'Carub.0006s0322' => 'cru', 'Carub.0006s3586' => 'cru', 'Carub.0007s1855' => 'cru', 'Ca_07808_v3' => 'car', 'Ca_09535_v3' => 'car', 'Ca_10548_v3' => 'car', 'Ca_19913_v3' => 'car', 'Ca_19916_v3' => 'car', 'Ca_19975_v3' => 'car', 'CBR_g22876' => 'cbr', 'CBR_g22879' => 'cbr', 'CBR_g38491' => 'cbr', 'CBR_g54185' => 'cbr', 'CBR_g54190' => 'cbr', 'Cc02_g11020' => 'ccan', 'Cc02_g23920' => 'ccan', 'Cc02_g39860' => 'ccan', 'Cc02_g39870' => 'ccan', 'Cc03_g06760' => 'ccan', 'Cc06_g02450' => 'ccan', 'Cc09_g09450' => 'ccan', 'CDE02G1959' => 'cde', 'CDE04G0600' => 'cde', 'CDE07G1996' => 'cde', 'CDE07G2078' => 'cde', 'CDE11G0611' => 'cde', 'Cfa001683' => 'cfa', 'Cfa001734' => 'cfa', 'Cfa001737' => 'cfa', 'Cfa003751' => 'cfa', 'Cfa012019' => 'cfa', 'Cfa017353' => 'cfa', 'Cfa017732' => 'cfa', 'Cfa022464' => 'cfa', 'Ciclev10012400m.g' => 'ccl', 'Ciclev10021242m.g' => 'ccl', 'Ciclev10021302m.g' => 'ccl', 'Ciclev10021463m.g' => 'ccl', 'Ciclev10032359m.g' => 'ccl', 'CiPaw.01G081000' => 'cil', 'CiPaw.01G262500' => 'cil', 'CiPaw.01G269800' => 'cil', 'CiPaw.02G168400' => 'cil', 'CiPaw.05G119500' => 'cil', 'CiPaw.11G147300' => 'cil', 'ClCG01G003630' => 'cla', 'ClCG05G000510' => 'cla', 'ClCG05G002300' => 'cla', 'ClCG08G007650' => 'cla', 'ClCG10G021250' => 'cla', 'COL.COLO4_06218' => 'col', 'COL.COLO4_12538' => 'col', 'COL.COLO4_14775' => 'col', 'COL.COLO4_23875' => 'col', 'Cpa.g.sc141.16' => 'cpa', 'Cpa.g.sc169.16' => 'cpa', 'Cpa.g.sc244.4' => 'cpa', 'Cpa.g.sc244.5' => 'cpa', 'Cpa.g.sc29.87' => 'cpa', 'Cpa.g.sc53.115' => 'cpa', 'Cre03.g207502' => 'cre', 'Cre06.g277000' => 'cre', 'Cre09.g394050' => 'cre', 'CsaV3_3G007680' => 'csa', 'CsaV3_3G009710' => 'csa', 'CsaV3_3G034790' => 'csa', 'CsaV3_5G003750' => 'csa', 'CsaV3_6G036620' => 'csa', 'CSS0002288' => 'camsi', 'CSS0011250' => 'camsi', 'CSS0021619' => 'camsi', 'CSS0046701' => 'camsi', 'DCAR_006420' => 'dca', 'DCAR_006865' => 'dca', 'DCAR_008558' => 'dca', 'DCAR_028754' => 'dca', 'DCAR_028755' => 'dca', 'Dinv31218' => 'din', 'Dinv32371' => 'din', 'Dinv34250' => 'din', 'Dinv37156' => 'din', 'Dinv43704' => 'din', 'Duzib093G1811' => 'dzi', 'Duzib106G1622' => 'dzi', 'Duzib114G0504' => 'dzi', 'Duzib128G0338' => 'dzi', 'Duzib128G1577' => 'dzi', 'Duzib133G0104' => 'dzi', 'Duzib133G1080' => 'dzi', 'Duzib138G0324' => 'dzi', 'Duzib138G0394' => 'dzi', 'Duzib205G0122' => 'dzi', 'Duzib268G1020' => 'dzi', 'Duzib268G1359' => 'dzi', 'ECA232G3929' => 'eca', 'ECA236G2210' => 'eca', 'ECA236G2287' => 'eca', 'ECA240G4568' => 'eca', 'ECA247G0894' => 'eca', 'EL10Ac1g00200' => 'bvu', 'EL10Ac1g00886' => 'bvu', 'EL10As1g23091' => 'bvu', 'EL10As1g23092' => 'bvu', 'Eucgr.A01284' => 'egr', 'Eucgr.A01285' => 'egr', 'Eucgr.D02456' => 'egr', 'Eucgr.E00018' => 'egr', 'Eucgr.E01439' => 'egr', 'Eucgr.G02859' => 'egr', 'FAN01G0168' => 'fan', 'FAN01G0453' => 'fan', 'FAN01G2761' => 'fan', 'FAN02G1239' => 'fan', 'FAN03G0645' => 'fan', 'FAN03G2707' => 'fan', 'FAN03G2978' => 'fan', 'FAN04G0227' => 'fan', 'FAN06G0091' => 'fan', 'FAN06G1418' => 'fan', 'FAN06G1512' => 'fan', 'FAN06G1986' => 'fan', 'FAN06G2905' => 'fan', 'FAN06G4325' => 'fan', 'FAN08G0033' => 'fan', 'FAN09G0642' => 'fan', 'FAN10G1763' => 'fan', 'FAN10G2026' => 'fan', 'FAN10G2513' => 'fan', 'FAN10G3402' => 'fan', 'FAN10G3564' => 'fan', 'FAN10G3987' => 'fan', 'FAN13G1490' => 'fan', 'FAN14G5857' => 'fan', 'FAN18G1188' => 'fan', 'FvH4_5g00750' => 'fve', 'FvH4_6g13410' => 'fve', 'FvH4_7g11740' => 'fve', 'FvH4_7g17410' => 'fve', 'FvH4_7g18860' => 'fve', 'Glyma.01G099100' => 'gma', 'Glyma.01G142300' => 'gma', 'Glyma.03G025500' => 'gma', 'Glyma.03G069700' => 'gma', 'Glyma.03G260000' => 'gma', 'Glyma.09G269800' => 'gma', 'Glyma.10G208700' => 'gma', 'Glyma.18G220400' => 'gma', 'Glyma.20G182000' => 'gma', 'Gohir.A01G221726' => 'ghi', 'Gohir.A07G134600' => 'ghi', 'Gohir.A07G146000' => 'ghi', 'Gohir.A08G173900' => 'ghi', 'Gohir.A09G194900' => 'ghi', 'Gohir.A10G204100' => 'ghi', 'Gohir.A11G080600' => 'ghi', 'Gohir.A11G327500' => 'ghi', 'Gohir.A12G101800' => 'ghi', 'Gohir.D01G211200' => 'ghi', 'Gohir.D07G139200' => 'ghi', 'Gohir.D07G152100' => 'ghi', 'Gohir.D08G192600' => 'ghi', 'Gohir.D09G189200' => 'ghi', 'Gohir.D10G212000' => 'ghi', 'Gohir.D11G085200' => 'ghi', 'Gohir.D11G346400' => 'ghi', 'Gohir.D12G104800' => 'ghi', 'Gorai.001G151300' => 'gra', 'Gorai.001G174100' => 'gra', 'Gorai.002G257000' => 'gra', 'Gorai.004G202600' => 'gra', 'Gorai.007G090900' => 'gra', 'Gorai.007G376700' => 'gra', 'Gorai.008G114100' => 'gra', 'Gorai.011G237900' => 'gra', 'GSVIVG01005450001' => 'vvi', 'GSVIVG01016232001' => 'vvi', 'GSVIVG01026157001' => 'vvi', 'GSVIVG01027419001' => 'vvi', 'GSVIVG01027631001' => 'vvi', 'GSVIVG01034143001' => 'vvi', 'HanXRQChr03g0093921' => 'han', 'HanXRQChr04g0120001' => 'han', 'HanXRQChr04g0122561' => 'han', 'HanXRQChr09g0246851' => 'han', 'HanXRQChr10g0293311' => 'han', 'HanXRQChr13g0425231' => 'han', 'HanXRQChr16g0532571' => 'han', 'Haze_09050' => 'cav', 'Haze_15715' => 'cav', 'Haze_15716' => 'cav', 'Haze_16803' => 'cav', 'Haze_16850' => 'cav', 'Hma1.2p1_0301F.1_g118655' => 'hma', 'Hma1.2p1_0309F.1_g120590' => 'hma', 'Hma1.2p1_0936F.1_g238900' => 'hma', 'Hma1.2p1_3552F.1_g336740' => 'hma', 'HPP92_003520' => 'vpl', 'HPP92_006628' => 'vpl', 'HPP92_006645' => 'vpl', 'HPP92_014669' => 'vpl', 'HPP92_015077' => 'vpl', 'Hund16742' => 'sun', 'Hund17022' => 'sun', 'Lalb_Chr02g0152131' => 'lal', 'Lalb_Chr05g0225371' => 'lal', 'Lalb_Chr07g0189841' => 'lal', 'Lalb_Chr07g0192961' => 'lal', 'Lalb_Chr12g0208221' => 'lal', 'Lalb_Chr13g0291211' => 'lal', 'Lalb_Chr13g0291781' => 'lal', 'Lalb_Chr18g0044651' => 'lal', 'Lalb_Chr21g0313731' => 'lal', 'Lj1g0022533' => 'lja', 'Lj2A18T50' => 'lonja', 'Lj2A92G93' => 'lonja', 'Lj3A965T73' => 'lonja', 'Lj3g0000673' => 'lja', 'Lj3g0002666' => 'lja', 'Lj4g0016985' => 'lja', 'Lj5g0003625' => 'lja', 'Lj7A529G36' => 'lonja', 'Lj9A569T49' => 'lonja', 'Lj9A604T63' => 'lonja', 'Lsat_1_v5_gn_3_132060' => 'lsa', 'Lsat_1_v5_gn_4_68941' => 'lsa', 'Lsat_1_v5_gn_5_95580' => 'lsa', 'Lsat_1_v5_gn_7_161' => 'lsa', 'Lsat_1_v5_gn_7_7041' => 'lsa', 'Lsat_1_v5_gn_9_33481' => 'lsa', 'Lsat_1_v5_gn_9_68260' => 'lsa', 'Manes.01G073100' => 'mes', 'Manes.01G266300' => 'mes', 'Manes.02G033300' => 'mes', 'Manes.05G017900' => 'mes', 'Manes.05G046100' => 'mes', 'Manes.08G080900' => 'mes', 'Manes.10G049400' => 'mes', 'Mapoly0009s0186' => 'mpo', 'Mapoly0036s0118' => 'mpo', 'Mapoly0101s0046' => 'mpo', 'MBI04_g30218_MAGBIO' => 'mbi', 'MBI04_g35564_MAGBIO' => 'mbi', 'MBI12_g34011_MAGBIO' => 'mbi', 'MBI14_g04655_MAGBIO' => 'mbi', 'MCO07G653' => 'mco', 'MCO10G173' => 'mco', 'MD01G1087100' => 'mdo', 'MD01G1104200' => 'mdo', 'MD02G1205100' => 'mdo', 'MD04G1079200' => 'mdo', 'MD04G1131400' => 'mdo', 'MD07G1121600' => 'mdo', 'MD07G1157300' => 'mdo', 'MD07G1171000' => 'mdo', 'MD12G1144500' => 'mdo', 'Medtr1g094610' => 'mtr', 'Medtr4g021795' => 'mtr', 'Medtr4g023760' => 'mtr', 'Medtr7g118050' => 'mtr', 'MELO3C005582.2' => 'cme', 'MELO3C005989.2' => 'cme', 'MELO3C006192.2' => 'cme', 'MELO3C009248.2' => 'cme', 'MELO3C019817.2' => 'cme', 'Migut.B01625' => 'egut', 'Migut.B01915' => 'egut', 'Migut.F01721' => 'egut', 'Migut.J00314' => 'egut', 'MSTRG.20742' => 'ama', 'MSTRG.8134' => 'ama', 'Nitab4.5_0000096g0010' => 'nta', 'Nitab4.5_0000202g0030' => 'nta', 'Nitab4.5_0000216g0370' => 'nta', 'Nitab4.5_0000457g0230' => 'nta', 'Nitab4.5_0001702g0170' => 'nta', 'Nitab4.5_0003607g0010' => 'nta', 'Nitab4.5_0004917g0020' => 'nta', 'Nitab4.5_0007059g0010' => 'nta', 'Nitab4.5_0007184g0010' => 'nta', 'Nitab4.5_0007346g0020' => 'nta', 'Nn1g00410' => 'nnu', 'Nn1g01252' => 'nnu', 'Nn2g11168' => 'nnu', 'Nn2g13403' => 'nnu', 'Nn2g13760' => 'nnu', 'Nn4g26380' => 'nnu', 'Oeu000806.2' => 'oeu', 'Oeu005788.1' => 'oeu', 'Oeu006900.3' => 'oeu', 'Oeu007797.1' => 'oeu', 'Oeu011932.1' => 'oeu', 'Oeu022739.1' => 'oeu', 'Oeu037918.1' => 'oeu', 'Oeu055490.2' => 'oeu', 'Os01g0844400' => 'osa', 'Os02g0819100' => 'osa', 'Os03g0804300' => 'osa', 'Os05g0458000' => 'osa', 'Os07g0467800' => 'osa', 'Os12g0602200' => 'osa', 'Peaxi162Scf00013g03444' => 'pax', 'Peaxi162Scf00094g01120' => 'pax', 'Peaxi162Scf00191g01211' => 'pax', 'Peaxi162Scf00238g01110' => 'pax', 'Peaxi162Scf00330g00719' => 'pax', 'Peaxi162Scf00627g00018' => 'pax', 'PGR031G2686' => 'pgr', 'PGR042G0809' => 'pgr', 'PGR142G0193' => 'pgr', 'PGSC0003DMG400011066' => 'stu', 'PGSC0003DMG400012041' => 'stu', 'PGSC0003DMG400013678' => 'stu', 'PGSC0003DMG400023477' => 'stu', 'PGSC0003DMG400025956' => 'stu', 'PGSC0003DMG401019151' => 'stu', 'Phvul.006G116400' => 'pvu', 'Phvul.007G097300' => 'pvu', 'Phvul.010G015000' => 'pvu', 'Phvul.010G083900' => 'pvu', 'Potri.001G117100' => 'ptr', 'Potri.002G147300' => 'ptr', 'Potri.003G115600' => 'ptr', 'Potri.006G087400' => 'ptr', 'Potri.010G226100' => 'ptr', 'Potri.014G069200' => 'ptr', 'Potri.014G104000' => 'ptr', 'Potri.016G100200' => 'ptr', 'Pp3c10_20450' => 'ppa', 'Pp3c1_42400' => 'ppa', 'Pp3c3_24390' => 'ppa', 'Pp3c3_2860' => 'ppa', 'PRCOL_00003193' => 'pco', 'Prupe.2G144500' => 'ppe', 'Prupe.2G195700' => 'ppe', 'Prupe.2G209800' => 'ppe', 'Prupe.5G080000' => 'ppe', 'Prupe.6G257900' => 'ppe', 'Psat3g001160' => 'psa', 'Psat6g181880' => 'psa', 'Psat7g233720' => 'psa', 'PSO063G7587' => 'pso', 'PSO339G2145' => 'pso', 'PSO339G3369' => 'pso', 'PSO478G2747' => 'pso', 'PSO513G0140' => 'pso', 'PSO782G1614' => 'pso', 'PSO782G4889' => 'pso', 'PSO782G5485' => 'pso', 'PSO801G0241' => 'pso', 'QL07p048854' => 'qlo', 'QL08p046745' => 'qlo', 'QL08p052606' => 'qlo', 'QL08p053414' => 'qlo', 'QL08p054868' => 'qlo', 'RcHm_v2.0_Chr1g0350251' => 'rch', 'RcHm_v2.0_Chr1g0360851' => 'rch', 'RcHm_v2.0_Chr1g0362791' => 'rch', 'RcHm_v2.0_Chr3g0466281' => 'rch', 'RcHm_v2.0_Chr7g0201481' => 'rch', 'Rhsim01G0148600' => 'rsi', 'Rhsim05G0194400' => 'rsi', 'Rhsim07G0000700' => 'rsi', 'Rhsim07G0000800' => 'rsi', 'Rhsim07G0027900' => 'rsi', 'Rhsim09G0149500' => 'rsi', 'RhsimUnG0186900' => 'rsi', 'Sabra01G0089900' => 'sbr', 'Sabra02G0114700' => 'sbr', 'Sabra02G0116300' => 'sbr', 'Sabra03G0080100' => 'sbr', 'Sabra08G0024300' => 'sbr', 'Sabra10G0174300' => 'sbr', 'Sabra14G0048900' => 'sbr', 'Sabra14G0076500' => 'sbr', 'SalBow5G2513' => 'sbo', 'Sc01g0002300' => 'sci', 'Sc01g0004450' => 'sci', 'Sc06g0001680' => 'sci', 'Sc23g0003580' => 'sci', 'Sed0000913' => 'sed', 'Sed0001655' => 'sed', 'Sed0007745' => 'sed', 'Sed0010951' => 'sed', 'Sed0017599' => 'sed', 'Sed0021405' => 'sed', 'Sed0022810' => 'sed', 'SEGI_07099' => 'sgi', 'SEGI_11931' => 'sgi', 'SEGI_13187' => 'sgi', 'SEGI_29958' => 'sgi', 'SEGI_36351' => 'sgi', 'SGA_v2.0_scaffold126G33770' => 'sas', 'SGA_v2.0_scaffold153G37003' => 'sas', 'SGA_v2.0_scaffold2G01359' => 'sas', 'SGA_v2.0_scaffold5G03064' => 'sas', 'SGA_v2.0_scaffold95G28903' => 'sas', 'SHI12701' => 'shi', 'SHI26410' => 'shi', 'SHI38997' => 'shi', 'SHI53759' => 'shi', 'SHI53886' => 'shi', 'SHI54714' => 'shi', 'SMO011G0041' => 'smo', 'SMO146G0251' => 'smo', 'SMO160G0004' => 'smo', 'SMO174G0057' => 'smo', 'SMO244G0089' => 'smo', 'SMO296G0011' => 'smo', 'Solyc01g091280.3' => 'sly', 'Solyc05g047610.3' => 'sly', 'Solyc05g047640.3' => 'sly', 'Solyc05g055630.3' => 'sly', 'Solyc10g018160.2' => 'sly', 'Solyc10g084820.2' => 'sly', 'Solyc10g086565.2' => 'sly', 'Sopen01g037030' => 'spe', 'Sopen05g027920' => 'spe', 'Sopen05g034070' => 'spe', 'Sopen10g007260' => 'spe', 'Sopen10g034260' => 'spe', 'Sopen10g035950' => 'spe', 'Sp3g07710' => 'spa', 'Sp4g27420' => 'spa', 'Sp5g02450' => 'spa', 'Sp6g01280' => 'spa', 'Sp6g38480' => 'spa', 'Sp7g20780' => 'spa', 'TAR374G1413' => 'tar', 'TAR623G1777' => 'tar', 'TAR629G2370' => 'tar', 'TAR633G1759' => 'tar', 'TAR636G3387' => 'tar', 'THA.LOC104802447' => 'tha', 'THA.LOC104813916' => 'tha', 'THA.LOC104816423' => 'tha', 'THA.LOC104817246' => 'tha', 'THA.LOC104825895' => 'tha', 'Thecc.01G335200' => 'tca', 'Thecc.01G377400' => 'tca', 'Thecc.03G262200' => 'tca', 'Thecc.05G036800' => 'tca', 'Thecc.10G080500' => 'tca', 'Thecc.10G080800' => 'tca', 'Thhalv10001560m.g' => 'esa', 'Thhalv10006120m.g' => 'esa', 'Thhalv10014375m.g' => 'esa', 'Thhalv10021264m.g' => 'esa', 'Thhalv10028856m.g' => 'esa', 'TPR.G1914' => 'tpr', 'TPR.G4757' => 'tpr', 'TPR.G5595' => 'tpr', 'TWI14G0952' => 'twi', 'TWI14G1307' => 'twi', 'TWI38G2143' => 'twi', 'TWI59G0826' => 'twi', 'TWI77G0527' => 'twi', 'TWI81G0150' => 'twi', 'unitig_21.g21018' => 'ugi', 'unitig_26.g9725' => 'ugi', 'unitig_744.g24653' => 'ugi', 'unitig_749.g13778' => 'ugi', 'unitig_899.g15035' => 'ugi', 'vmacro04296' => 'vma', 'vmacro04852' => 'vma', 'vmacro13404' => 'vma', 'vmacro20169' => 'vma', 'vmacro21014' => 'vma', 'VMungo0331G0237' => 'vmu', 'VMungo0331G0706' => 'vmu', 'VMungo0331G1361' => 'vmu', 'VMungo0331G1489' => 'vmu', 'VMungo0540G1037' => 'vmu', 'VMungo0720G2487' => 'vmu', 'VMungo0720G2721' => 'vmu', 'Zm00001eb086860' => 'zma', 'Zm00001eb104760' => 'zma', 'Zm00001eb148220' => 'zma', 'Zm00001eb259030' => 'zma', 'Zm00001eb289590' => 'zma', 'Zm00001eb420150' => 'zma' ) $gf_id = 'HOM05D000968' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000968' ) $data_identifier = 'HOM05D000968' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 19, 'bol' => (int) 9, 'bra' => (int) 12, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 5, 'ccan' => (int) 7, 'cde' => (int) 5, 'cfa' => (int) 8, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 4, 'dca' => (int) 5, 'din' => (int) 5, 'dzi' => (int) 12, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 25, 'fve' => (int) 5, 'gma' => (int) 9, 'ghi' => (int) 18, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 7, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 5, 'sun' => (int) 2, 'lal' => (int) 9, 'lja' => (int) 5, 'lonja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 9, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 2, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 3, 'stu' => (int) 6, 'pvu' => (int) 4, 'ptr' => (int) 8, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 3, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 1, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 5, 'sas' => (int) 5, 'shi' => (int) 6, 'smo' => (int) 6, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 3, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420150' $species_info = array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ) $local_species = 'lsa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000968', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p31690' => 'bna', 'A03p36040' => 'bna', 'A03p53730' => 'bna', 'A04p01410' => 'bna', 'A05p05420' => 'bna', 'A05p39630' => 'bna', 'A05p39640' => 'bna', 'A09p00970' => 'bna', 'A09p53060' => 'bna', 'A10p31890' => 'bna', 'Aa31LG10G15040' => 'aar', 'Aa31LG1G21090' => 'aar', 'Aa31LG1G26900' => 'aar', 'Aa31LG3G1820' => 'aar', 'Aa31LG5G1100' => 'aar', 'Aa31LG6G4740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2265' => 'aag', 'Actinidia07998' => 'ach', 'Actinidia11266' => 'ach', 'Actinidia12682' => 'ach', 'Actinidia26479' => 'ach', 'Actinidia31406' => 'ach', 'Actinidia32437' => 'ach', 'Actinidia38862' => 'ach', 'Ah.05g174230' => 'amhyb', 'Ah.05g179070' => 'amhyb', 'Ah.05g179090' => 'amhyb', 'Ah.12g059950' => 'amhyb', 'AL3G20480' => 'aly', 'AL4G44520' => 'aly', 'AL5G43110' => 'aly', 'AL6G13890' => 'aly', 'AL6G52620' => 'aly', 'AL7G30830' => 'aly', 'Aqoxy1G00899' => 'aox', 'Aqoxy5G04333' => 'aox', 'Aqoxy7G00641' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3IZ0NN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4EF6AW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W9P8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79GA3M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C43NQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFCU6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G95YVJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCHK29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LU1UG8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX91RN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGB4B1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8DA0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9H7JI' => 'arhy', 'AT3G09320' => 'ath', 'AT3G60800' => 'ath', 'AT4G00840' => 'ath', 'AT4G22750' => 'ath', 'AT5G04270' => 'ath', 'ATR0090G003' => 'atr', 'ATR0559G349' => 'atr', 'ATR0680G261' => 'atr', 'ATR0810G048' => 'atr', 'Atru.chr12.831' => 'acertr', 'Atru.chr5.303' => 'acertr', 'Atru.chr5.748' => 'acertr', 'Atru.chr8.1999' => 'acertr', 'Atru.chr9.1436' => 'acertr', 'AUR62004211' => 'cqu', 'AUR62004548' => 'cqu', 'AUR62013637' => 'cqu', 'AUR62022662' => 'cqu', 'AUR62025777' => 'cqu', 'AUR62042386' => 'cqu', 'BcaB01g02310' => 'bca', 'BcaB01g06062' => 'bca', 'BcaB02g08975' => 'bca', 'BcaB02g08980' => 'bca', 'BcaC01g04228' => 'bca', 'BcaC01g06830' => 'bca', 'BcaC02g10186' => 'bca', 'BcaC02g12214' => 'bca', 'BcaC04g24101' => 'bca', 'BcaC05g29520' => 'bca', 'BcaC05g29661' => 'bca', 'BcaC06g32130' => 'bca', 'BcaC06g32131' => 'bca', 'BcaC07g40601' => 'bca', 'BcaC07g42641' => 'bca', 'BcaNung01038' => 'bca', 'BcaNung01676' => 'bca', 'BcaNung02480' => 'bca', 'BcaNung07376' => 'bca', 'BolC3t16146H' => 'bol', 'BolC3t16637H' => 'bol', 'BolC4t22257H' => 'bol', 'BolC4t24728H' => 'bol', 'BolC5t34517H' => 'bol', 'BolC7t45703H' => 'bol', 'BolC8t51166H' => 'bol', 'BolC9t53038H' => 'bol', 'BolC9t60000H' => 'bol', 'BraA01t01345Z' => 'bra', 'BraA01t01346Z' => 'bra', 'BraA01t01348Z' => 'bra', 'BraA03t12347Z' => 'bra', 'BraA03t12775Z' => 'bra', 'BraA03t14439Z' => 'bra', 'BraA04t15860Z' => 'bra', 'BraA05t19511Z' => 'bra', 'BraA05t22746Z' => 'bra', 'BraA09t35767Z' => 'bra', 'BraA09t40732Z' => 'bra', 'BraA10t45233Z' => 'bra', 'C03p38720' => 'bna', 'C03p43680' => 'bna', 'C04p06350' => 'bna', 'C04p31800' => 'bna', 'C05p58680' => 'bna', 'C07p52110' => 'bna', 'C08p35760' => 'bna', 'C09p01050' => 'bna', 'C09p72600' => 'bna', 'CAN.G106.2' => 'can', 'CAN.G1482.1' => 'can', 'CAN.G324.12' => 'can', 'CAN.G388.20' => 'can', 'CAN.G412.7' => 'can', 'CAN.G694.32' => 'can', 'CAN.G92.12' => 'can', 'CANSAT11G2353' => 'cansat', 'CANSAT21G1398' => 'cansat', 'CANSAT56G2456' => 'cansat', 'CANSAT56G3031' => 'cansat', 'CANSAT56G4539' => 'cansat', 'CARHR083680' => 'chi', 'CARHR171190' => 'chi', 'CARHR209010' => 'chi', 'CARHR229680' => 'chi', 'CARHR249490' => 'chi', 'Carub.0003s0844' => 'cru', 'Carub.0005s2755' => 'cru', 'Carub.0006s0322' => 'cru', 'Carub.0006s3586' => 'cru', 'Carub.0007s1855' => 'cru', 'Ca_07808_v3' => 'car', 'Ca_09535_v3' => 'car', 'Ca_10548_v3' => 'car', 'Ca_19913_v3' => 'car', 'Ca_19916_v3' => 'car', 'Ca_19975_v3' => 'car', 'CBR_g22876' => 'cbr', 'CBR_g22879' => 'cbr', 'CBR_g38491' => 'cbr', 'CBR_g54185' => 'cbr', 'CBR_g54190' => 'cbr', 'Cc02_g11020' => 'ccan', 'Cc02_g23920' => 'ccan', 'Cc02_g39860' => 'ccan', 'Cc02_g39870' => 'ccan', 'Cc03_g06760' => 'ccan', 'Cc06_g02450' => 'ccan', 'Cc09_g09450' => 'ccan', 'CDE02G1959' => 'cde', 'CDE04G0600' => 'cde', 'CDE07G1996' => 'cde', 'CDE07G2078' => 'cde', 'CDE11G0611' => 'cde', 'Cfa001683' => 'cfa', 'Cfa001734' => 'cfa', 'Cfa001737' => 'cfa', 'Cfa003751' => 'cfa', 'Cfa012019' => 'cfa', 'Cfa017353' => 'cfa', 'Cfa017732' => 'cfa', 'Cfa022464' => 'cfa', 'Ciclev10012400m.g' => 'ccl', 'Ciclev10021242m.g' => 'ccl', 'Ciclev10021302m.g' => 'ccl', 'Ciclev10021463m.g' => 'ccl', 'Ciclev10032359m.g' => 'ccl', 'CiPaw.01G081000' => 'cil', 'CiPaw.01G262500' => 'cil', 'CiPaw.01G269800' => 'cil', 'CiPaw.02G168400' => 'cil', 'CiPaw.05G119500' => 'cil', 'CiPaw.11G147300' => 'cil', 'ClCG01G003630' => 'cla', 'ClCG05G000510' => 'cla', 'ClCG05G002300' => 'cla', 'ClCG08G007650' => 'cla', 'ClCG10G021250' => 'cla', 'COL.COLO4_06218' => 'col', 'COL.COLO4_12538' => 'col', 'COL.COLO4_14775' => 'col', 'COL.COLO4_23875' => 'col', 'Cpa.g.sc141.16' => 'cpa', 'Cpa.g.sc169.16' => 'cpa', 'Cpa.g.sc244.4' => 'cpa', 'Cpa.g.sc244.5' => 'cpa', 'Cpa.g.sc29.87' => 'cpa', 'Cpa.g.sc53.115' => 'cpa', 'Cre03.g207502' => 'cre', 'Cre06.g277000' => 'cre', 'Cre09.g394050' => 'cre', 'CsaV3_3G007680' => 'csa', 'CsaV3_3G009710' => 'csa', 'CsaV3_3G034790' => 'csa', 'CsaV3_5G003750' => 'csa', 'CsaV3_6G036620' => 'csa', 'CSS0002288' => 'camsi', 'CSS0011250' => 'camsi', 'CSS0021619' => 'camsi', 'CSS0046701' => 'camsi', 'DCAR_006420' => 'dca', 'DCAR_006865' => 'dca', 'DCAR_008558' => 'dca', 'DCAR_028754' => 'dca', 'DCAR_028755' => 'dca', 'Dinv31218' => 'din', 'Dinv32371' => 'din', 'Dinv34250' => 'din', 'Dinv37156' => 'din', 'Dinv43704' => 'din', 'Duzib093G1811' => 'dzi', 'Duzib106G1622' => 'dzi', 'Duzib114G0504' => 'dzi', 'Duzib128G0338' => 'dzi', 'Duzib128G1577' => 'dzi', 'Duzib133G0104' => 'dzi', 'Duzib133G1080' => 'dzi', 'Duzib138G0324' => 'dzi', 'Duzib138G0394' => 'dzi', 'Duzib205G0122' => 'dzi', 'Duzib268G1020' => 'dzi', 'Duzib268G1359' => 'dzi', 'ECA232G3929' => 'eca', 'ECA236G2210' => 'eca', 'ECA236G2287' => 'eca', 'ECA240G4568' => 'eca', 'ECA247G0894' => 'eca', 'EL10Ac1g00200' => 'bvu', 'EL10Ac1g00886' => 'bvu', 'EL10As1g23091' => 'bvu', 'EL10As1g23092' => 'bvu', 'Eucgr.A01284' => 'egr', 'Eucgr.A01285' => 'egr', 'Eucgr.D02456' => 'egr', 'Eucgr.E00018' => 'egr', 'Eucgr.E01439' => 'egr', 'Eucgr.G02859' => 'egr', 'FAN01G0168' => 'fan', 'FAN01G0453' => 'fan', 'FAN01G2761' => 'fan', 'FAN02G1239' => 'fan', 'FAN03G0645' => 'fan', 'FAN03G2707' => 'fan', 'FAN03G2978' => 'fan', 'FAN04G0227' => 'fan', 'FAN06G0091' => 'fan', 'FAN06G1418' => 'fan', 'FAN06G1512' => 'fan', 'FAN06G1986' => 'fan', 'FAN06G2905' => 'fan', 'FAN06G4325' => 'fan', 'FAN08G0033' => 'fan', 'FAN09G0642' => 'fan', 'FAN10G1763' => 'fan', 'FAN10G2026' => 'fan', 'FAN10G2513' => 'fan', 'FAN10G3402' => 'fan', 'FAN10G3564' => 'fan', 'FAN10G3987' => 'fan', 'FAN13G1490' => 'fan', 'FAN14G5857' => 'fan', 'FAN18G1188' => 'fan', 'FvH4_5g00750' => 'fve', 'FvH4_6g13410' => 'fve', 'FvH4_7g11740' => 'fve', 'FvH4_7g17410' => 'fve', 'FvH4_7g18860' => 'fve', 'Glyma.01G099100' => 'gma', 'Glyma.01G142300' => 'gma', 'Glyma.03G025500' => 'gma', 'Glyma.03G069700' => 'gma', 'Glyma.03G260000' => 'gma', 'Glyma.09G269800' => 'gma', 'Glyma.10G208700' => 'gma', 'Glyma.18G220400' => 'gma', 'Glyma.20G182000' => 'gma', 'Gohir.A01G221726' => 'ghi', 'Gohir.A07G134600' => 'ghi', 'Gohir.A07G146000' => 'ghi', 'Gohir.A08G173900' => 'ghi', 'Gohir.A09G194900' => 'ghi', 'Gohir.A10G204100' => 'ghi', 'Gohir.A11G080600' => 'ghi', 'Gohir.A11G327500' => 'ghi', 'Gohir.A12G101800' => 'ghi', 'Gohir.D01G211200' => 'ghi', 'Gohir.D07G139200' => 'ghi', 'Gohir.D07G152100' => 'ghi', 'Gohir.D08G192600' => 'ghi', 'Gohir.D09G189200' => 'ghi', 'Gohir.D10G212000' => 'ghi', 'Gohir.D11G085200' => 'ghi', 'Gohir.D11G346400' => 'ghi', 'Gohir.D12G104800' => 'ghi', 'Gorai.001G151300' => 'gra', 'Gorai.001G174100' => 'gra', 'Gorai.002G257000' => 'gra', 'Gorai.004G202600' => 'gra', 'Gorai.007G090900' => 'gra', 'Gorai.007G376700' => 'gra', 'Gorai.008G114100' => 'gra', 'Gorai.011G237900' => 'gra', 'GSVIVG01005450001' => 'vvi', 'GSVIVG01016232001' => 'vvi', 'GSVIVG01026157001' => 'vvi', 'GSVIVG01027419001' => 'vvi', 'GSVIVG01027631001' => 'vvi', 'GSVIVG01034143001' => 'vvi', 'HanXRQChr03g0093921' => 'han', 'HanXRQChr04g0120001' => 'han', 'HanXRQChr04g0122561' => 'han', 'HanXRQChr09g0246851' => 'han', 'HanXRQChr10g0293311' => 'han', 'HanXRQChr13g0425231' => 'han', 'HanXRQChr16g0532571' => 'han', 'Haze_09050' => 'cav', 'Haze_15715' => 'cav', 'Haze_15716' => 'cav', 'Haze_16803' => 'cav', 'Haze_16850' => 'cav', 'Hma1.2p1_0301F.1_g118655' => 'hma', 'Hma1.2p1_0309F.1_g120590' => 'hma', 'Hma1.2p1_0936F.1_g238900' => 'hma', 'Hma1.2p1_3552F.1_g336740' => 'hma', 'HPP92_003520' => 'vpl', 'HPP92_006628' => 'vpl', 'HPP92_006645' => 'vpl', 'HPP92_014669' => 'vpl', 'HPP92_015077' => 'vpl', 'Hund16742' => 'sun', 'Hund17022' => 'sun', 'Lalb_Chr02g0152131' => 'lal', 'Lalb_Chr05g0225371' => 'lal', 'Lalb_Chr07g0189841' => 'lal', 'Lalb_Chr07g0192961' => 'lal', 'Lalb_Chr12g0208221' => 'lal', 'Lalb_Chr13g0291211' => 'lal', 'Lalb_Chr13g0291781' => 'lal', 'Lalb_Chr18g0044651' => 'lal', 'Lalb_Chr21g0313731' => 'lal', 'Lj1g0022533' => 'lja', 'Lj2A18T50' => 'lonja', 'Lj2A92G93' => 'lonja', 'Lj3A965T73' => 'lonja', 'Lj3g0000673' => 'lja', 'Lj3g0002666' => 'lja', 'Lj4g0016985' => 'lja', 'Lj5g0003625' => 'lja', 'Lj7A529G36' => 'lonja', 'Lj9A569T49' => 'lonja', 'Lj9A604T63' => 'lonja', 'Lsat_1_v5_gn_3_132060' => 'lsa', 'Lsat_1_v5_gn_4_68941' => 'lsa', 'Lsat_1_v5_gn_5_95580' => 'lsa', 'Lsat_1_v5_gn_7_161' => 'lsa', 'Lsat_1_v5_gn_7_7041' => 'lsa', 'Lsat_1_v5_gn_9_33481' => 'lsa', 'Lsat_1_v5_gn_9_68260' => 'lsa', 'Manes.01G073100' => 'mes', 'Manes.01G266300' => 'mes', 'Manes.02G033300' => 'mes', 'Manes.05G017900' => 'mes', 'Manes.05G046100' => 'mes', 'Manes.08G080900' => 'mes', 'Manes.10G049400' => 'mes', 'Mapoly0009s0186' => 'mpo', 'Mapoly0036s0118' => 'mpo', 'Mapoly0101s0046' => 'mpo', 'MBI04_g30218_MAGBIO' => 'mbi', 'MBI04_g35564_MAGBIO' => 'mbi', 'MBI12_g34011_MAGBIO' => 'mbi', 'MBI14_g04655_MAGBIO' => 'mbi', 'MCO07G653' => 'mco', 'MCO10G173' => 'mco', 'MD01G1087100' => 'mdo', 'MD01G1104200' => 'mdo', 'MD02G1205100' => 'mdo', 'MD04G1079200' => 'mdo', 'MD04G1131400' => 'mdo', 'MD07G1121600' => 'mdo', 'MD07G1157300' => 'mdo', 'MD07G1171000' => 'mdo', 'MD12G1144500' => 'mdo', 'Medtr1g094610' => 'mtr', 'Medtr4g021795' => 'mtr', 'Medtr4g023760' => 'mtr', 'Medtr7g118050' => 'mtr', 'MELO3C005582.2' => 'cme', 'MELO3C005989.2' => 'cme', 'MELO3C006192.2' => 'cme', 'MELO3C009248.2' => 'cme', 'MELO3C019817.2' => 'cme', 'Migut.B01625' => 'egut', 'Migut.B01915' => 'egut', 'Migut.F01721' => 'egut', 'Migut.J00314' => 'egut', 'MSTRG.20742' => 'ama', 'MSTRG.8134' => 'ama', 'Nitab4.5_0000096g0010' => 'nta', 'Nitab4.5_0000202g0030' => 'nta', 'Nitab4.5_0000216g0370' => 'nta', 'Nitab4.5_0000457g0230' => 'nta', 'Nitab4.5_0001702g0170' => 'nta', 'Nitab4.5_0003607g0010' => 'nta', 'Nitab4.5_0004917g0020' => 'nta', 'Nitab4.5_0007059g0010' => 'nta', 'Nitab4.5_0007184g0010' => 'nta', 'Nitab4.5_0007346g0020' => 'nta', 'Nn1g00410' => 'nnu', 'Nn1g01252' => 'nnu', 'Nn2g11168' => 'nnu', 'Nn2g13403' => 'nnu', 'Nn2g13760' => 'nnu', 'Nn4g26380' => 'nnu', 'Oeu000806.2' => 'oeu', 'Oeu005788.1' => 'oeu', 'Oeu006900.3' => 'oeu', 'Oeu007797.1' => 'oeu', 'Oeu011932.1' => 'oeu', 'Oeu022739.1' => 'oeu', 'Oeu037918.1' => 'oeu', 'Oeu055490.2' => 'oeu', 'Os01g0844400' => 'osa', 'Os02g0819100' => 'osa', 'Os03g0804300' => 'osa', 'Os05g0458000' => 'osa', 'Os07g0467800' => 'osa', 'Os12g0602200' => 'osa', 'Peaxi162Scf00013g03444' => 'pax', 'Peaxi162Scf00094g01120' => 'pax', 'Peaxi162Scf00191g01211' => 'pax', 'Peaxi162Scf00238g01110' => 'pax', 'Peaxi162Scf00330g00719' => 'pax', 'Peaxi162Scf00627g00018' => 'pax', 'PGR031G2686' => 'pgr', 'PGR042G0809' => 'pgr', 'PGR142G0193' => 'pgr', 'PGSC0003DMG400011066' => 'stu', 'PGSC0003DMG400012041' => 'stu', 'PGSC0003DMG400013678' => 'stu', 'PGSC0003DMG400023477' => 'stu', 'PGSC0003DMG400025956' => 'stu', 'PGSC0003DMG401019151' => 'stu', 'Phvul.006G116400' => 'pvu', 'Phvul.007G097300' => 'pvu', 'Phvul.010G015000' => 'pvu', 'Phvul.010G083900' => 'pvu', 'Potri.001G117100' => 'ptr', 'Potri.002G147300' => 'ptr', 'Potri.003G115600' => 'ptr', 'Potri.006G087400' => 'ptr', 'Potri.010G226100' => 'ptr', 'Potri.014G069200' => 'ptr', 'Potri.014G104000' => 'ptr', 'Potri.016G100200' => 'ptr', 'Pp3c10_20450' => 'ppa', 'Pp3c1_42400' => 'ppa', 'Pp3c3_24390' => 'ppa', 'Pp3c3_2860' => 'ppa', 'PRCOL_00003193' => 'pco', 'Prupe.2G144500' => 'ppe', 'Prupe.2G195700' => 'ppe', 'Prupe.2G209800' => 'ppe', 'Prupe.5G080000' => 'ppe', 'Prupe.6G257900' => 'ppe', 'Psat3g001160' => 'psa', 'Psat6g181880' => 'psa', 'Psat7g233720' => 'psa', 'PSO063G7587' => 'pso', 'PSO339G2145' => 'pso', 'PSO339G3369' => 'pso', 'PSO478G2747' => 'pso', 'PSO513G0140' => 'pso', 'PSO782G1614' => 'pso', 'PSO782G4889' => 'pso', 'PSO782G5485' => 'pso', 'PSO801G0241' => 'pso', 'QL07p048854' => 'qlo', 'QL08p046745' => 'qlo', 'QL08p052606' => 'qlo', 'QL08p053414' => 'qlo', 'QL08p054868' => 'qlo', 'RcHm_v2.0_Chr1g0350251' => 'rch', 'RcHm_v2.0_Chr1g0360851' => 'rch', 'RcHm_v2.0_Chr1g0362791' => 'rch', 'RcHm_v2.0_Chr3g0466281' => 'rch', 'RcHm_v2.0_Chr7g0201481' => 'rch', 'Rhsim01G0148600' => 'rsi', 'Rhsim05G0194400' => 'rsi', 'Rhsim07G0000700' => 'rsi', 'Rhsim07G0000800' => 'rsi', 'Rhsim07G0027900' => 'rsi', 'Rhsim09G0149500' => 'rsi', 'RhsimUnG0186900' => 'rsi', 'Sabra01G0089900' => 'sbr', 'Sabra02G0114700' => 'sbr', 'Sabra02G0116300' => 'sbr', 'Sabra03G0080100' => 'sbr', 'Sabra08G0024300' => 'sbr', 'Sabra10G0174300' => 'sbr', 'Sabra14G0048900' => 'sbr', 'Sabra14G0076500' => 'sbr', 'SalBow5G2513' => 'sbo', 'Sc01g0002300' => 'sci', 'Sc01g0004450' => 'sci', 'Sc06g0001680' => 'sci', 'Sc23g0003580' => 'sci', 'Sed0000913' => 'sed', 'Sed0001655' => 'sed', 'Sed0007745' => 'sed', 'Sed0010951' => 'sed', 'Sed0017599' => 'sed', 'Sed0021405' => 'sed', 'Sed0022810' => 'sed', 'SEGI_07099' => 'sgi', 'SEGI_11931' => 'sgi', 'SEGI_13187' => 'sgi', 'SEGI_29958' => 'sgi', 'SEGI_36351' => 'sgi', 'SGA_v2.0_scaffold126G33770' => 'sas', 'SGA_v2.0_scaffold153G37003' => 'sas', 'SGA_v2.0_scaffold2G01359' => 'sas', 'SGA_v2.0_scaffold5G03064' => 'sas', 'SGA_v2.0_scaffold95G28903' => 'sas', 'SHI12701' => 'shi', 'SHI26410' => 'shi', 'SHI38997' => 'shi', 'SHI53759' => 'shi', 'SHI53886' => 'shi', 'SHI54714' => 'shi', 'SMO011G0041' => 'smo', 'SMO146G0251' => 'smo', 'SMO160G0004' => 'smo', 'SMO174G0057' => 'smo', 'SMO244G0089' => 'smo', 'SMO296G0011' => 'smo', 'Solyc01g091280.3' => 'sly', 'Solyc05g047610.3' => 'sly', 'Solyc05g047640.3' => 'sly', 'Solyc05g055630.3' => 'sly', 'Solyc10g018160.2' => 'sly', 'Solyc10g084820.2' => 'sly', 'Solyc10g086565.2' => 'sly', 'Sopen01g037030' => 'spe', 'Sopen05g027920' => 'spe', 'Sopen05g034070' => 'spe', 'Sopen10g007260' => 'spe', 'Sopen10g034260' => 'spe', 'Sopen10g035950' => 'spe', 'Sp3g07710' => 'spa', 'Sp4g27420' => 'spa', 'Sp5g02450' => 'spa', 'Sp6g01280' => 'spa', 'Sp6g38480' => 'spa', 'Sp7g20780' => 'spa', 'TAR374G1413' => 'tar', 'TAR623G1777' => 'tar', 'TAR629G2370' => 'tar', 'TAR633G1759' => 'tar', 'TAR636G3387' => 'tar', 'THA.LOC104802447' => 'tha', 'THA.LOC104813916' => 'tha', 'THA.LOC104816423' => 'tha', 'THA.LOC104817246' => 'tha', 'THA.LOC104825895' => 'tha', 'Thecc.01G335200' => 'tca', 'Thecc.01G377400' => 'tca', 'Thecc.03G262200' => 'tca', 'Thecc.05G036800' => 'tca', 'Thecc.10G080500' => 'tca', 'Thecc.10G080800' => 'tca', 'Thhalv10001560m.g' => 'esa', 'Thhalv10006120m.g' => 'esa', 'Thhalv10014375m.g' => 'esa', 'Thhalv10021264m.g' => 'esa', 'Thhalv10028856m.g' => 'esa', 'TPR.G1914' => 'tpr', 'TPR.G4757' => 'tpr', 'TPR.G5595' => 'tpr', 'TWI14G0952' => 'twi', 'TWI14G1307' => 'twi', 'TWI38G2143' => 'twi', 'TWI59G0826' => 'twi', 'TWI77G0527' => 'twi', 'TWI81G0150' => 'twi', 'unitig_21.g21018' => 'ugi', 'unitig_26.g9725' => 'ugi', 'unitig_744.g24653' => 'ugi', 'unitig_749.g13778' => 'ugi', 'unitig_899.g15035' => 'ugi', 'vmacro04296' => 'vma', 'vmacro04852' => 'vma', 'vmacro13404' => 'vma', 'vmacro20169' => 'vma', 'vmacro21014' => 'vma', 'VMungo0331G0237' => 'vmu', 'VMungo0331G0706' => 'vmu', 'VMungo0331G1361' => 'vmu', 'VMungo0331G1489' => 'vmu', 'VMungo0540G1037' => 'vmu', 'VMungo0720G2487' => 'vmu', 'VMungo0720G2721' => 'vmu', 'Zm00001eb086860' => 'zma', 'Zm00001eb104760' => 'zma', 'Zm00001eb148220' => 'zma', 'Zm00001eb259030' => 'zma', 'Zm00001eb289590' => 'zma', 'Zm00001eb420150' => 'zma' ), 'gf_id' => 'HOM05D000968', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000968' ), 'data_identifier' => 'HOM05D000968', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000968', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p31690' => 'bna', 'A03p36040' => 'bna', 'A03p53730' => 'bna', 'A04p01410' => 'bna', 'A05p05420' => 'bna', 'A05p39630' => 'bna', 'A05p39640' => 'bna', 'A09p00970' => 'bna', 'A09p53060' => 'bna', 'A10p31890' => 'bna', 'Aa31LG10G15040' => 'aar', 'Aa31LG1G21090' => 'aar', 'Aa31LG1G26900' => 'aar', 'Aa31LG3G1820' => 'aar', 'Aa31LG5G1100' => 'aar', 'Aa31LG6G4740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2265' => 'aag', 'Actinidia07998' => 'ach', 'Actinidia11266' => 'ach', 'Actinidia12682' => 'ach', 'Actinidia26479' => 'ach', 'Actinidia31406' => 'ach', 'Actinidia32437' => 'ach', 'Actinidia38862' => 'ach', 'Ah.05g174230' => 'amhyb', 'Ah.05g179070' => 'amhyb', 'Ah.05g179090' => 'amhyb', 'Ah.12g059950' => 'amhyb', 'AL3G20480' => 'aly', 'AL4G44520' => 'aly', 'AL5G43110' => 'aly', 'AL6G13890' => 'aly', 'AL6G52620' => 'aly', 'AL7G30830' => 'aly', 'Aqoxy1G00899' => 'aox', 'Aqoxy5G04333' => 'aox', 'Aqoxy7G00641' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3IZ0NN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4EF6AW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W9P8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79GA3M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C43NQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFCU6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G95YVJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCHK29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LU1UG8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX91RN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGB4B1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8DA0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9H7JI' => 'arhy', 'AT3G09320' => 'ath', 'AT3G60800' => 'ath', 'AT4G00840' => 'ath', 'AT4G22750' => 'ath', 'AT5G04270' => 'ath', 'ATR0090G003' => 'atr', 'ATR0559G349' => 'atr', 'ATR0680G261' => 'atr', 'ATR0810G048' => 'atr', 'Atru.chr12.831' => 'acertr', 'Atru.chr5.303' => 'acertr', 'Atru.chr5.748' => 'acertr', 'Atru.chr8.1999' => 'acertr', 'Atru.chr9.1436' => 'acertr', 'AUR62004211' => 'cqu', 'AUR62004548' => 'cqu', 'AUR62013637' => 'cqu', 'AUR62022662' => 'cqu', 'AUR62025777' => 'cqu', 'AUR62042386' => 'cqu', 'BcaB01g02310' => 'bca', 'BcaB01g06062' => 'bca', 'BcaB02g08975' => 'bca', 'BcaB02g08980' => 'bca', 'BcaC01g04228' => 'bca', 'BcaC01g06830' => 'bca', 'BcaC02g10186' => 'bca', 'BcaC02g12214' => 'bca', 'BcaC04g24101' => 'bca', 'BcaC05g29520' => 'bca', 'BcaC05g29661' => 'bca', 'BcaC06g32130' => 'bca', 'BcaC06g32131' => 'bca', 'BcaC07g40601' => 'bca', 'BcaC07g42641' => 'bca', 'BcaNung01038' => 'bca', 'BcaNung01676' => 'bca', 'BcaNung02480' => 'bca', 'BcaNung07376' => 'bca', 'BolC3t16146H' => 'bol', 'BolC3t16637H' => 'bol', 'BolC4t22257H' => 'bol', 'BolC4t24728H' => 'bol', 'BolC5t34517H' => 'bol', 'BolC7t45703H' => 'bol', 'BolC8t51166H' => 'bol', 'BolC9t53038H' => 'bol', 'BolC9t60000H' => 'bol', 'BraA01t01345Z' => 'bra', 'BraA01t01346Z' => 'bra', 'BraA01t01348Z' => 'bra', 'BraA03t12347Z' => 'bra', 'BraA03t12775Z' => 'bra', 'BraA03t14439Z' => 'bra', 'BraA04t15860Z' => 'bra', 'BraA05t19511Z' => 'bra', 'BraA05t22746Z' => 'bra', 'BraA09t35767Z' => 'bra', 'BraA09t40732Z' => 'bra', 'BraA10t45233Z' => 'bra', 'C03p38720' => 'bna', 'C03p43680' => 'bna', 'C04p06350' => 'bna', 'C04p31800' => 'bna', 'C05p58680' => 'bna', 'C07p52110' => 'bna', 'C08p35760' => 'bna', 'C09p01050' => 'bna', 'C09p72600' => 'bna', 'CAN.G106.2' => 'can', 'CAN.G1482.1' => 'can', 'CAN.G324.12' => 'can', 'CAN.G388.20' => 'can', 'CAN.G412.7' => 'can', 'CAN.G694.32' => 'can', 'CAN.G92.12' => 'can', 'CANSAT11G2353' => 'cansat', 'CANSAT21G1398' => 'cansat', 'CANSAT56G2456' => 'cansat', 'CANSAT56G3031' => 'cansat', 'CANSAT56G4539' => 'cansat', 'CARHR083680' => 'chi', 'CARHR171190' => 'chi', 'CARHR209010' => 'chi', 'CARHR229680' => 'chi', 'CARHR249490' => 'chi', 'Carub.0003s0844' => 'cru', 'Carub.0005s2755' => 'cru', 'Carub.0006s0322' => 'cru', 'Carub.0006s3586' => 'cru', 'Carub.0007s1855' => 'cru', 'Ca_07808_v3' => 'car', 'Ca_09535_v3' => 'car', 'Ca_10548_v3' => 'car', 'Ca_19913_v3' => 'car', 'Ca_19916_v3' => 'car', 'Ca_19975_v3' => 'car', 'CBR_g22876' => 'cbr', 'CBR_g22879' => 'cbr', 'CBR_g38491' => 'cbr', 'CBR_g54185' => 'cbr', 'CBR_g54190' => 'cbr', 'Cc02_g11020' => 'ccan', 'Cc02_g23920' => 'ccan', 'Cc02_g39860' => 'ccan', 'Cc02_g39870' => 'ccan', 'Cc03_g06760' => 'ccan', 'Cc06_g02450' => 'ccan', 'Cc09_g09450' => 'ccan', 'CDE02G1959' => 'cde', 'CDE04G0600' => 'cde', 'CDE07G1996' => 'cde', 'CDE07G2078' => 'cde', 'CDE11G0611' => 'cde', 'Cfa001683' => 'cfa', 'Cfa001734' => 'cfa', 'Cfa001737' => 'cfa', 'Cfa003751' => 'cfa', 'Cfa012019' => 'cfa', 'Cfa017353' => 'cfa', 'Cfa017732' => 'cfa', 'Cfa022464' => 'cfa', 'Ciclev10012400m.g' => 'ccl', 'Ciclev10021242m.g' => 'ccl', 'Ciclev10021302m.g' => 'ccl', 'Ciclev10021463m.g' => 'ccl', 'Ciclev10032359m.g' => 'ccl', 'CiPaw.01G081000' => 'cil', 'CiPaw.01G262500' => 'cil', 'CiPaw.01G269800' => 'cil', 'CiPaw.02G168400' => 'cil', 'CiPaw.05G119500' => 'cil', 'CiPaw.11G147300' => 'cil', 'ClCG01G003630' => 'cla', 'ClCG05G000510' => 'cla', 'ClCG05G002300' => 'cla', 'ClCG08G007650' => 'cla', 'ClCG10G021250' => 'cla', 'COL.COLO4_06218' => 'col', 'COL.COLO4_12538' => 'col', 'COL.COLO4_14775' => 'col', 'COL.COLO4_23875' => 'col', 'Cpa.g.sc141.16' => 'cpa', 'Cpa.g.sc169.16' => 'cpa', 'Cpa.g.sc244.4' => 'cpa', 'Cpa.g.sc244.5' => 'cpa', 'Cpa.g.sc29.87' => 'cpa', 'Cpa.g.sc53.115' => 'cpa', 'Cre03.g207502' => 'cre', 'Cre06.g277000' => 'cre', 'Cre09.g394050' => 'cre', 'CsaV3_3G007680' => 'csa', 'CsaV3_3G009710' => 'csa', 'CsaV3_3G034790' => 'csa', 'CsaV3_5G003750' => 'csa', 'CsaV3_6G036620' => 'csa', 'CSS0002288' => 'camsi', 'CSS0011250' => 'camsi', 'CSS0021619' => 'camsi', 'CSS0046701' => 'camsi', 'DCAR_006420' => 'dca', 'DCAR_006865' => 'dca', 'DCAR_008558' => 'dca', 'DCAR_028754' => 'dca', 'DCAR_028755' => 'dca', 'Dinv31218' => 'din', 'Dinv32371' => 'din', 'Dinv34250' => 'din', 'Dinv37156' => 'din', 'Dinv43704' => 'din', 'Duzib093G1811' => 'dzi', 'Duzib106G1622' => 'dzi', 'Duzib114G0504' => 'dzi', 'Duzib128G0338' => 'dzi', 'Duzib128G1577' => 'dzi', 'Duzib133G0104' => 'dzi', 'Duzib133G1080' => 'dzi', 'Duzib138G0324' => 'dzi', 'Duzib138G0394' => 'dzi', 'Duzib205G0122' => 'dzi', 'Duzib268G1020' => 'dzi', 'Duzib268G1359' => 'dzi', 'ECA232G3929' => 'eca', 'ECA236G2210' => 'eca', 'ECA236G2287' => 'eca', 'ECA240G4568' => 'eca', 'ECA247G0894' => 'eca', 'EL10Ac1g00200' => 'bvu', 'EL10Ac1g00886' => 'bvu', 'EL10As1g23091' => 'bvu', 'EL10As1g23092' => 'bvu', 'Eucgr.A01284' => 'egr', 'Eucgr.A01285' => 'egr', 'Eucgr.D02456' => 'egr', 'Eucgr.E00018' => 'egr', 'Eucgr.E01439' => 'egr', 'Eucgr.G02859' => 'egr', 'FAN01G0168' => 'fan', 'FAN01G0453' => 'fan', 'FAN01G2761' => 'fan', 'FAN02G1239' => 'fan', 'FAN03G0645' => 'fan', 'FAN03G2707' => 'fan', 'FAN03G2978' => 'fan', 'FAN04G0227' => 'fan', 'FAN06G0091' => 'fan', 'FAN06G1418' => 'fan', 'FAN06G1512' => 'fan', 'FAN06G1986' => 'fan', 'FAN06G2905' => 'fan', 'FAN06G4325' => 'fan', 'FAN08G0033' => 'fan', 'FAN09G0642' => 'fan', 'FAN10G1763' => 'fan', 'FAN10G2026' => 'fan', 'FAN10G2513' => 'fan', 'FAN10G3402' => 'fan', 'FAN10G3564' => 'fan', 'FAN10G3987' => 'fan', 'FAN13G1490' => 'fan', 'FAN14G5857' => 'fan', 'FAN18G1188' => 'fan', 'FvH4_5g00750' => 'fve', 'FvH4_6g13410' => 'fve', 'FvH4_7g11740' => 'fve', 'FvH4_7g17410' => 'fve', 'FvH4_7g18860' => 'fve', 'Glyma.01G099100' => 'gma', 'Glyma.01G142300' => 'gma', 'Glyma.03G025500' => 'gma', 'Glyma.03G069700' => 'gma', 'Glyma.03G260000' => 'gma', 'Glyma.09G269800' => 'gma', 'Glyma.10G208700' => 'gma', 'Glyma.18G220400' => 'gma', 'Glyma.20G182000' => 'gma', 'Gohir.A01G221726' => 'ghi', 'Gohir.A07G134600' => 'ghi', 'Gohir.A07G146000' => 'ghi', 'Gohir.A08G173900' => 'ghi', 'Gohir.A09G194900' => 'ghi', 'Gohir.A10G204100' => 'ghi', 'Gohir.A11G080600' => 'ghi', 'Gohir.A11G327500' => 'ghi', 'Gohir.A12G101800' => 'ghi', 'Gohir.D01G211200' => 'ghi', 'Gohir.D07G139200' => 'ghi', 'Gohir.D07G152100' => 'ghi', 'Gohir.D08G192600' => 'ghi', 'Gohir.D09G189200' => 'ghi', 'Gohir.D10G212000' => 'ghi', 'Gohir.D11G085200' => 'ghi', 'Gohir.D11G346400' => 'ghi', 'Gohir.D12G104800' => 'ghi', 'Gorai.001G151300' => 'gra', 'Gorai.001G174100' => 'gra', 'Gorai.002G257000' => 'gra', 'Gorai.004G202600' => 'gra', 'Gorai.007G090900' => 'gra', 'Gorai.007G376700' => 'gra', 'Gorai.008G114100' => 'gra', 'Gorai.011G237900' => 'gra', 'GSVIVG01005450001' => 'vvi', 'GSVIVG01016232001' => 'vvi', 'GSVIVG01026157001' => 'vvi', 'GSVIVG01027419001' => 'vvi', 'GSVIVG01027631001' => 'vvi', 'GSVIVG01034143001' => 'vvi', 'HanXRQChr03g0093921' => 'han', 'HanXRQChr04g0120001' => 'han', 'HanXRQChr04g0122561' => 'han', 'HanXRQChr09g0246851' => 'han', 'HanXRQChr10g0293311' => 'han', 'HanXRQChr13g0425231' => 'han', 'HanXRQChr16g0532571' => 'han', 'Haze_09050' => 'cav', 'Haze_15715' => 'cav', 'Haze_15716' => 'cav', 'Haze_16803' => 'cav', 'Haze_16850' => 'cav', 'Hma1.2p1_0301F.1_g118655' => 'hma', 'Hma1.2p1_0309F.1_g120590' => 'hma', 'Hma1.2p1_0936F.1_g238900' => 'hma', 'Hma1.2p1_3552F.1_g336740' => 'hma', 'HPP92_003520' => 'vpl', 'HPP92_006628' => 'vpl', 'HPP92_006645' => 'vpl', 'HPP92_014669' => 'vpl', 'HPP92_015077' => 'vpl', 'Hund16742' => 'sun', 'Hund17022' => 'sun', 'Lalb_Chr02g0152131' => 'lal', 'Lalb_Chr05g0225371' => 'lal', 'Lalb_Chr07g0189841' => 'lal', 'Lalb_Chr07g0192961' => 'lal', 'Lalb_Chr12g0208221' => 'lal', 'Lalb_Chr13g0291211' => 'lal', 'Lalb_Chr13g0291781' => 'lal', 'Lalb_Chr18g0044651' => 'lal', 'Lalb_Chr21g0313731' => 'lal', 'Lj1g0022533' => 'lja', 'Lj2A18T50' => 'lonja', 'Lj2A92G93' => 'lonja', 'Lj3A965T73' => 'lonja', 'Lj3g0000673' => 'lja', 'Lj3g0002666' => 'lja', 'Lj4g0016985' => 'lja', 'Lj5g0003625' => 'lja', 'Lj7A529G36' => 'lonja', 'Lj9A569T49' => 'lonja', 'Lj9A604T63' => 'lonja', 'Lsat_1_v5_gn_3_132060' => 'lsa', 'Lsat_1_v5_gn_4_68941' => 'lsa', 'Lsat_1_v5_gn_5_95580' => 'lsa', 'Lsat_1_v5_gn_7_161' => 'lsa', 'Lsat_1_v5_gn_7_7041' => 'lsa', 'Lsat_1_v5_gn_9_33481' => 'lsa', 'Lsat_1_v5_gn_9_68260' => 'lsa', 'Manes.01G073100' => 'mes', 'Manes.01G266300' => 'mes', 'Manes.02G033300' => 'mes', 'Manes.05G017900' => 'mes', 'Manes.05G046100' => 'mes', 'Manes.08G080900' => 'mes', 'Manes.10G049400' => 'mes', 'Mapoly0009s0186' => 'mpo', 'Mapoly0036s0118' => 'mpo', 'Mapoly0101s0046' => 'mpo', 'MBI04_g30218_MAGBIO' => 'mbi', 'MBI04_g35564_MAGBIO' => 'mbi', 'MBI12_g34011_MAGBIO' => 'mbi', 'MBI14_g04655_MAGBIO' => 'mbi', 'MCO07G653' => 'mco', 'MCO10G173' => 'mco', 'MD01G1087100' => 'mdo', 'MD01G1104200' => 'mdo', 'MD02G1205100' => 'mdo', 'MD04G1079200' => 'mdo', 'MD04G1131400' => 'mdo', 'MD07G1121600' => 'mdo', 'MD07G1157300' => 'mdo', 'MD07G1171000' => 'mdo', 'MD12G1144500' => 'mdo', 'Medtr1g094610' => 'mtr', 'Medtr4g021795' => 'mtr', 'Medtr4g023760' => 'mtr', 'Medtr7g118050' => 'mtr', 'MELO3C005582.2' => 'cme', 'MELO3C005989.2' => 'cme', 'MELO3C006192.2' => 'cme', 'MELO3C009248.2' => 'cme', 'MELO3C019817.2' => 'cme', 'Migut.B01625' => 'egut', 'Migut.B01915' => 'egut', 'Migut.F01721' => 'egut', 'Migut.J00314' => 'egut', 'MSTRG.20742' => 'ama', 'MSTRG.8134' => 'ama', 'Nitab4.5_0000096g0010' => 'nta', 'Nitab4.5_0000202g0030' => 'nta', 'Nitab4.5_0000216g0370' => 'nta', 'Nitab4.5_0000457g0230' => 'nta', 'Nitab4.5_0001702g0170' => 'nta', 'Nitab4.5_0003607g0010' => 'nta', 'Nitab4.5_0004917g0020' => 'nta', 'Nitab4.5_0007059g0010' => 'nta', 'Nitab4.5_0007184g0010' => 'nta', 'Nitab4.5_0007346g0020' => 'nta', 'Nn1g00410' => 'nnu', 'Nn1g01252' => 'nnu', 'Nn2g11168' => 'nnu', 'Nn2g13403' => 'nnu', 'Nn2g13760' => 'nnu', 'Nn4g26380' => 'nnu', 'Oeu000806.2' => 'oeu', 'Oeu005788.1' => 'oeu', 'Oeu006900.3' => 'oeu', 'Oeu007797.1' => 'oeu', 'Oeu011932.1' => 'oeu', 'Oeu022739.1' => 'oeu', 'Oeu037918.1' => 'oeu', 'Oeu055490.2' => 'oeu', 'Os01g0844400' => 'osa', 'Os02g0819100' => 'osa', 'Os03g0804300' => 'osa', 'Os05g0458000' => 'osa', 'Os07g0467800' => 'osa', 'Os12g0602200' => 'osa', 'Peaxi162Scf00013g03444' => 'pax', 'Peaxi162Scf00094g01120' => 'pax', 'Peaxi162Scf00191g01211' => 'pax', 'Peaxi162Scf00238g01110' => 'pax', 'Peaxi162Scf00330g00719' => 'pax', 'Peaxi162Scf00627g00018' => 'pax', 'PGR031G2686' => 'pgr', 'PGR042G0809' => 'pgr', 'PGR142G0193' => 'pgr', 'PGSC0003DMG400011066' => 'stu', 'PGSC0003DMG400012041' => 'stu', 'PGSC0003DMG400013678' => 'stu', 'PGSC0003DMG400023477' => 'stu', 'PGSC0003DMG400025956' => 'stu', 'PGSC0003DMG401019151' => 'stu', 'Phvul.006G116400' => 'pvu', 'Phvul.007G097300' => 'pvu', 'Phvul.010G015000' => 'pvu', 'Phvul.010G083900' => 'pvu', 'Potri.001G117100' => 'ptr', 'Potri.002G147300' => 'ptr', 'Potri.003G115600' => 'ptr', 'Potri.006G087400' => 'ptr', 'Potri.010G226100' => 'ptr', 'Potri.014G069200' => 'ptr', 'Potri.014G104000' => 'ptr', 'Potri.016G100200' => 'ptr', 'Pp3c10_20450' => 'ppa', 'Pp3c1_42400' => 'ppa', 'Pp3c3_24390' => 'ppa', 'Pp3c3_2860' => 'ppa', 'PRCOL_00003193' => 'pco', 'Prupe.2G144500' => 'ppe', 'Prupe.2G195700' => 'ppe', 'Prupe.2G209800' => 'ppe', 'Prupe.5G080000' => 'ppe', 'Prupe.6G257900' => 'ppe', 'Psat3g001160' => 'psa', 'Psat6g181880' => 'psa', 'Psat7g233720' => 'psa', 'PSO063G7587' => 'pso', 'PSO339G2145' => 'pso', 'PSO339G3369' => 'pso', 'PSO478G2747' => 'pso', 'PSO513G0140' => 'pso', 'PSO782G1614' => 'pso', 'PSO782G4889' => 'pso', 'PSO782G5485' => 'pso', 'PSO801G0241' => 'pso', 'QL07p048854' => 'qlo', 'QL08p046745' => 'qlo', 'QL08p052606' => 'qlo', 'QL08p053414' => 'qlo', 'QL08p054868' => 'qlo', 'RcHm_v2.0_Chr1g0350251' => 'rch', 'RcHm_v2.0_Chr1g0360851' => 'rch', 'RcHm_v2.0_Chr1g0362791' => 'rch', 'RcHm_v2.0_Chr3g0466281' => 'rch', 'RcHm_v2.0_Chr7g0201481' => 'rch', 'Rhsim01G0148600' => 'rsi', 'Rhsim05G0194400' => 'rsi', 'Rhsim07G0000700' => 'rsi', 'Rhsim07G0000800' => 'rsi', 'Rhsim07G0027900' => 'rsi', 'Rhsim09G0149500' => 'rsi', 'RhsimUnG0186900' => 'rsi', 'Sabra01G0089900' => 'sbr', 'Sabra02G0114700' => 'sbr', 'Sabra02G0116300' => 'sbr', 'Sabra03G0080100' => 'sbr', 'Sabra08G0024300' => 'sbr', 'Sabra10G0174300' => 'sbr', 'Sabra14G0048900' => 'sbr', 'Sabra14G0076500' => 'sbr', 'SalBow5G2513' => 'sbo', 'Sc01g0002300' => 'sci', 'Sc01g0004450' => 'sci', 'Sc06g0001680' => 'sci', 'Sc23g0003580' => 'sci', 'Sed0000913' => 'sed', 'Sed0001655' => 'sed', 'Sed0007745' => 'sed', 'Sed0010951' => 'sed', 'Sed0017599' => 'sed', 'Sed0021405' => 'sed', 'Sed0022810' => 'sed', 'SEGI_07099' => 'sgi', 'SEGI_11931' => 'sgi', 'SEGI_13187' => 'sgi', 'SEGI_29958' => 'sgi', 'SEGI_36351' => 'sgi', 'SGA_v2.0_scaffold126G33770' => 'sas', 'SGA_v2.0_scaffold153G37003' => 'sas', 'SGA_v2.0_scaffold2G01359' => 'sas', 'SGA_v2.0_scaffold5G03064' => 'sas', 'SGA_v2.0_scaffold95G28903' => 'sas', 'SHI12701' => 'shi', 'SHI26410' => 'shi', 'SHI38997' => 'shi', 'SHI53759' => 'shi', 'SHI53886' => 'shi', 'SHI54714' => 'shi', 'SMO011G0041' => 'smo', 'SMO146G0251' => 'smo', 'SMO160G0004' => 'smo', 'SMO174G0057' => 'smo', 'SMO244G0089' => 'smo', 'SMO296G0011' => 'smo', 'Solyc01g091280.3' => 'sly', 'Solyc05g047610.3' => 'sly', 'Solyc05g047640.3' => 'sly', 'Solyc05g055630.3' => 'sly', 'Solyc10g018160.2' => 'sly', 'Solyc10g084820.2' => 'sly', 'Solyc10g086565.2' => 'sly', 'Sopen01g037030' => 'spe', 'Sopen05g027920' => 'spe', 'Sopen05g034070' => 'spe', 'Sopen10g007260' => 'spe', 'Sopen10g034260' => 'spe', 'Sopen10g035950' => 'spe', 'Sp3g07710' => 'spa', 'Sp4g27420' => 'spa', 'Sp5g02450' => 'spa', 'Sp6g01280' => 'spa', 'Sp6g38480' => 'spa', 'Sp7g20780' => 'spa', 'TAR374G1413' => 'tar', 'TAR623G1777' => 'tar', 'TAR629G2370' => 'tar', 'TAR633G1759' => 'tar', 'TAR636G3387' => 'tar', 'THA.LOC104802447' => 'tha', 'THA.LOC104813916' => 'tha', 'THA.LOC104816423' => 'tha', 'THA.LOC104817246' => 'tha', 'THA.LOC104825895' => 'tha', 'Thecc.01G335200' => 'tca', 'Thecc.01G377400' => 'tca', 'Thecc.03G262200' => 'tca', 'Thecc.05G036800' => 'tca', 'Thecc.10G080500' => 'tca', 'Thecc.10G080800' => 'tca', 'Thhalv10001560m.g' => 'esa', 'Thhalv10006120m.g' => 'esa', 'Thhalv10014375m.g' => 'esa', 'Thhalv10021264m.g' => 'esa', 'Thhalv10028856m.g' => 'esa', 'TPR.G1914' => 'tpr', 'TPR.G4757' => 'tpr', 'TPR.G5595' => 'tpr', 'TWI14G0952' => 'twi', 'TWI14G1307' => 'twi', 'TWI38G2143' => 'twi', 'TWI59G0826' => 'twi', 'TWI77G0527' => 'twi', 'TWI81G0150' => 'twi', 'unitig_21.g21018' => 'ugi', 'unitig_26.g9725' => 'ugi', 'unitig_744.g24653' => 'ugi', 'unitig_749.g13778' => 'ugi', 'unitig_899.g15035' => 'ugi', 'vmacro04296' => 'vma', 'vmacro04852' => 'vma', 'vmacro13404' => 'vma', 'vmacro20169' => 'vma', 'vmacro21014' => 'vma', 'VMungo0331G0237' => 'vmu', 'VMungo0331G0706' => 'vmu', 'VMungo0331G1361' => 'vmu', 'VMungo0331G1489' => 'vmu', 'VMungo0540G1037' => 'vmu', 'VMungo0720G2487' => 'vmu', 'VMungo0720G2721' => 'vmu', 'Zm00001eb086860' => 'zma', 'Zm00001eb104760' => 'zma', 'Zm00001eb148220' => 'zma', 'Zm00001eb259030' => 'zma', 'Zm00001eb289590' => 'zma', 'Zm00001eb420150' => 'zma' ) $gf_id = 'HOM05D000968' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000968' ) $data_identifier = 'HOM05D000968' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 19, 'bol' => (int) 9, 'bra' => (int) 12, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 5, 'ccan' => (int) 7, 'cde' => (int) 5, 'cfa' => (int) 8, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 4, 'dca' => (int) 5, 'din' => (int) 5, 'dzi' => (int) 12, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 25, 'fve' => (int) 5, 'gma' => (int) 9, 'ghi' => (int) 18, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 7, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 5, 'sun' => (int) 2, 'lal' => (int) 9, 'lja' => (int) 5, 'lonja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 9, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 2, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 3, 'stu' => (int) 6, 'pvu' => (int) 4, 'ptr' => (int) 8, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 3, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 1, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 5, 'sas' => (int) 5, 'shi' => (int) 6, 'smo' => (int) 6, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 3, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420150' $species_info = array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ) $local_species = 'lonja' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000968', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p31690' => 'bna', 'A03p36040' => 'bna', 'A03p53730' => 'bna', 'A04p01410' => 'bna', 'A05p05420' => 'bna', 'A05p39630' => 'bna', 'A05p39640' => 'bna', 'A09p00970' => 'bna', 'A09p53060' => 'bna', 'A10p31890' => 'bna', 'Aa31LG10G15040' => 'aar', 'Aa31LG1G21090' => 'aar', 'Aa31LG1G26900' => 'aar', 'Aa31LG3G1820' => 'aar', 'Aa31LG5G1100' => 'aar', 'Aa31LG6G4740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2265' => 'aag', 'Actinidia07998' => 'ach', 'Actinidia11266' => 'ach', 'Actinidia12682' => 'ach', 'Actinidia26479' => 'ach', 'Actinidia31406' => 'ach', 'Actinidia32437' => 'ach', 'Actinidia38862' => 'ach', 'Ah.05g174230' => 'amhyb', 'Ah.05g179070' => 'amhyb', 'Ah.05g179090' => 'amhyb', 'Ah.12g059950' => 'amhyb', 'AL3G20480' => 'aly', 'AL4G44520' => 'aly', 'AL5G43110' => 'aly', 'AL6G13890' => 'aly', 'AL6G52620' => 'aly', 'AL7G30830' => 'aly', 'Aqoxy1G00899' => 'aox', 'Aqoxy5G04333' => 'aox', 'Aqoxy7G00641' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3IZ0NN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4EF6AW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W9P8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79GA3M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C43NQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFCU6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G95YVJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCHK29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LU1UG8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX91RN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGB4B1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8DA0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9H7JI' => 'arhy', 'AT3G09320' => 'ath', 'AT3G60800' => 'ath', 'AT4G00840' => 'ath', 'AT4G22750' => 'ath', 'AT5G04270' => 'ath', 'ATR0090G003' => 'atr', 'ATR0559G349' => 'atr', 'ATR0680G261' => 'atr', 'ATR0810G048' => 'atr', 'Atru.chr12.831' => 'acertr', 'Atru.chr5.303' => 'acertr', 'Atru.chr5.748' => 'acertr', 'Atru.chr8.1999' => 'acertr', 'Atru.chr9.1436' => 'acertr', 'AUR62004211' => 'cqu', 'AUR62004548' => 'cqu', 'AUR62013637' => 'cqu', 'AUR62022662' => 'cqu', 'AUR62025777' => 'cqu', 'AUR62042386' => 'cqu', 'BcaB01g02310' => 'bca', 'BcaB01g06062' => 'bca', 'BcaB02g08975' => 'bca', 'BcaB02g08980' => 'bca', 'BcaC01g04228' => 'bca', 'BcaC01g06830' => 'bca', 'BcaC02g10186' => 'bca', 'BcaC02g12214' => 'bca', 'BcaC04g24101' => 'bca', 'BcaC05g29520' => 'bca', 'BcaC05g29661' => 'bca', 'BcaC06g32130' => 'bca', 'BcaC06g32131' => 'bca', 'BcaC07g40601' => 'bca', 'BcaC07g42641' => 'bca', 'BcaNung01038' => 'bca', 'BcaNung01676' => 'bca', 'BcaNung02480' => 'bca', 'BcaNung07376' => 'bca', 'BolC3t16146H' => 'bol', 'BolC3t16637H' => 'bol', 'BolC4t22257H' => 'bol', 'BolC4t24728H' => 'bol', 'BolC5t34517H' => 'bol', 'BolC7t45703H' => 'bol', 'BolC8t51166H' => 'bol', 'BolC9t53038H' => 'bol', 'BolC9t60000H' => 'bol', 'BraA01t01345Z' => 'bra', 'BraA01t01346Z' => 'bra', 'BraA01t01348Z' => 'bra', 'BraA03t12347Z' => 'bra', 'BraA03t12775Z' => 'bra', 'BraA03t14439Z' => 'bra', 'BraA04t15860Z' => 'bra', 'BraA05t19511Z' => 'bra', 'BraA05t22746Z' => 'bra', 'BraA09t35767Z' => 'bra', 'BraA09t40732Z' => 'bra', 'BraA10t45233Z' => 'bra', 'C03p38720' => 'bna', 'C03p43680' => 'bna', 'C04p06350' => 'bna', 'C04p31800' => 'bna', 'C05p58680' => 'bna', 'C07p52110' => 'bna', 'C08p35760' => 'bna', 'C09p01050' => 'bna', 'C09p72600' => 'bna', 'CAN.G106.2' => 'can', 'CAN.G1482.1' => 'can', 'CAN.G324.12' => 'can', 'CAN.G388.20' => 'can', 'CAN.G412.7' => 'can', 'CAN.G694.32' => 'can', 'CAN.G92.12' => 'can', 'CANSAT11G2353' => 'cansat', 'CANSAT21G1398' => 'cansat', 'CANSAT56G2456' => 'cansat', 'CANSAT56G3031' => 'cansat', 'CANSAT56G4539' => 'cansat', 'CARHR083680' => 'chi', 'CARHR171190' => 'chi', 'CARHR209010' => 'chi', 'CARHR229680' => 'chi', 'CARHR249490' => 'chi', 'Carub.0003s0844' => 'cru', 'Carub.0005s2755' => 'cru', 'Carub.0006s0322' => 'cru', 'Carub.0006s3586' => 'cru', 'Carub.0007s1855' => 'cru', 'Ca_07808_v3' => 'car', 'Ca_09535_v3' => 'car', 'Ca_10548_v3' => 'car', 'Ca_19913_v3' => 'car', 'Ca_19916_v3' => 'car', 'Ca_19975_v3' => 'car', 'CBR_g22876' => 'cbr', 'CBR_g22879' => 'cbr', 'CBR_g38491' => 'cbr', 'CBR_g54185' => 'cbr', 'CBR_g54190' => 'cbr', 'Cc02_g11020' => 'ccan', 'Cc02_g23920' => 'ccan', 'Cc02_g39860' => 'ccan', 'Cc02_g39870' => 'ccan', 'Cc03_g06760' => 'ccan', 'Cc06_g02450' => 'ccan', 'Cc09_g09450' => 'ccan', 'CDE02G1959' => 'cde', 'CDE04G0600' => 'cde', 'CDE07G1996' => 'cde', 'CDE07G2078' => 'cde', 'CDE11G0611' => 'cde', 'Cfa001683' => 'cfa', 'Cfa001734' => 'cfa', 'Cfa001737' => 'cfa', 'Cfa003751' => 'cfa', 'Cfa012019' => 'cfa', 'Cfa017353' => 'cfa', 'Cfa017732' => 'cfa', 'Cfa022464' => 'cfa', 'Ciclev10012400m.g' => 'ccl', 'Ciclev10021242m.g' => 'ccl', 'Ciclev10021302m.g' => 'ccl', 'Ciclev10021463m.g' => 'ccl', 'Ciclev10032359m.g' => 'ccl', 'CiPaw.01G081000' => 'cil', 'CiPaw.01G262500' => 'cil', 'CiPaw.01G269800' => 'cil', 'CiPaw.02G168400' => 'cil', 'CiPaw.05G119500' => 'cil', 'CiPaw.11G147300' => 'cil', 'ClCG01G003630' => 'cla', 'ClCG05G000510' => 'cla', 'ClCG05G002300' => 'cla', 'ClCG08G007650' => 'cla', 'ClCG10G021250' => 'cla', 'COL.COLO4_06218' => 'col', 'COL.COLO4_12538' => 'col', 'COL.COLO4_14775' => 'col', 'COL.COLO4_23875' => 'col', 'Cpa.g.sc141.16' => 'cpa', 'Cpa.g.sc169.16' => 'cpa', 'Cpa.g.sc244.4' => 'cpa', 'Cpa.g.sc244.5' => 'cpa', 'Cpa.g.sc29.87' => 'cpa', 'Cpa.g.sc53.115' => 'cpa', 'Cre03.g207502' => 'cre', 'Cre06.g277000' => 'cre', 'Cre09.g394050' => 'cre', 'CsaV3_3G007680' => 'csa', 'CsaV3_3G009710' => 'csa', 'CsaV3_3G034790' => 'csa', 'CsaV3_5G003750' => 'csa', 'CsaV3_6G036620' => 'csa', 'CSS0002288' => 'camsi', 'CSS0011250' => 'camsi', 'CSS0021619' => 'camsi', 'CSS0046701' => 'camsi', 'DCAR_006420' => 'dca', 'DCAR_006865' => 'dca', 'DCAR_008558' => 'dca', 'DCAR_028754' => 'dca', 'DCAR_028755' => 'dca', 'Dinv31218' => 'din', 'Dinv32371' => 'din', 'Dinv34250' => 'din', 'Dinv37156' => 'din', 'Dinv43704' => 'din', 'Duzib093G1811' => 'dzi', 'Duzib106G1622' => 'dzi', 'Duzib114G0504' => 'dzi', 'Duzib128G0338' => 'dzi', 'Duzib128G1577' => 'dzi', 'Duzib133G0104' => 'dzi', 'Duzib133G1080' => 'dzi', 'Duzib138G0324' => 'dzi', 'Duzib138G0394' => 'dzi', 'Duzib205G0122' => 'dzi', 'Duzib268G1020' => 'dzi', 'Duzib268G1359' => 'dzi', 'ECA232G3929' => 'eca', 'ECA236G2210' => 'eca', 'ECA236G2287' => 'eca', 'ECA240G4568' => 'eca', 'ECA247G0894' => 'eca', 'EL10Ac1g00200' => 'bvu', 'EL10Ac1g00886' => 'bvu', 'EL10As1g23091' => 'bvu', 'EL10As1g23092' => 'bvu', 'Eucgr.A01284' => 'egr', 'Eucgr.A01285' => 'egr', 'Eucgr.D02456' => 'egr', 'Eucgr.E00018' => 'egr', 'Eucgr.E01439' => 'egr', 'Eucgr.G02859' => 'egr', 'FAN01G0168' => 'fan', 'FAN01G0453' => 'fan', 'FAN01G2761' => 'fan', 'FAN02G1239' => 'fan', 'FAN03G0645' => 'fan', 'FAN03G2707' => 'fan', 'FAN03G2978' => 'fan', 'FAN04G0227' => 'fan', 'FAN06G0091' => 'fan', 'FAN06G1418' => 'fan', 'FAN06G1512' => 'fan', 'FAN06G1986' => 'fan', 'FAN06G2905' => 'fan', 'FAN06G4325' => 'fan', 'FAN08G0033' => 'fan', 'FAN09G0642' => 'fan', 'FAN10G1763' => 'fan', 'FAN10G2026' => 'fan', 'FAN10G2513' => 'fan', 'FAN10G3402' => 'fan', 'FAN10G3564' => 'fan', 'FAN10G3987' => 'fan', 'FAN13G1490' => 'fan', 'FAN14G5857' => 'fan', 'FAN18G1188' => 'fan', 'FvH4_5g00750' => 'fve', 'FvH4_6g13410' => 'fve', 'FvH4_7g11740' => 'fve', 'FvH4_7g17410' => 'fve', 'FvH4_7g18860' => 'fve', 'Glyma.01G099100' => 'gma', 'Glyma.01G142300' => 'gma', 'Glyma.03G025500' => 'gma', 'Glyma.03G069700' => 'gma', 'Glyma.03G260000' => 'gma', 'Glyma.09G269800' => 'gma', 'Glyma.10G208700' => 'gma', 'Glyma.18G220400' => 'gma', 'Glyma.20G182000' => 'gma', 'Gohir.A01G221726' => 'ghi', 'Gohir.A07G134600' => 'ghi', 'Gohir.A07G146000' => 'ghi', 'Gohir.A08G173900' => 'ghi', 'Gohir.A09G194900' => 'ghi', 'Gohir.A10G204100' => 'ghi', 'Gohir.A11G080600' => 'ghi', 'Gohir.A11G327500' => 'ghi', 'Gohir.A12G101800' => 'ghi', 'Gohir.D01G211200' => 'ghi', 'Gohir.D07G139200' => 'ghi', 'Gohir.D07G152100' => 'ghi', 'Gohir.D08G192600' => 'ghi', 'Gohir.D09G189200' => 'ghi', 'Gohir.D10G212000' => 'ghi', 'Gohir.D11G085200' => 'ghi', 'Gohir.D11G346400' => 'ghi', 'Gohir.D12G104800' => 'ghi', 'Gorai.001G151300' => 'gra', 'Gorai.001G174100' => 'gra', 'Gorai.002G257000' => 'gra', 'Gorai.004G202600' => 'gra', 'Gorai.007G090900' => 'gra', 'Gorai.007G376700' => 'gra', 'Gorai.008G114100' => 'gra', 'Gorai.011G237900' => 'gra', 'GSVIVG01005450001' => 'vvi', 'GSVIVG01016232001' => 'vvi', 'GSVIVG01026157001' => 'vvi', 'GSVIVG01027419001' => 'vvi', 'GSVIVG01027631001' => 'vvi', 'GSVIVG01034143001' => 'vvi', 'HanXRQChr03g0093921' => 'han', 'HanXRQChr04g0120001' => 'han', 'HanXRQChr04g0122561' => 'han', 'HanXRQChr09g0246851' => 'han', 'HanXRQChr10g0293311' => 'han', 'HanXRQChr13g0425231' => 'han', 'HanXRQChr16g0532571' => 'han', 'Haze_09050' => 'cav', 'Haze_15715' => 'cav', 'Haze_15716' => 'cav', 'Haze_16803' => 'cav', 'Haze_16850' => 'cav', 'Hma1.2p1_0301F.1_g118655' => 'hma', 'Hma1.2p1_0309F.1_g120590' => 'hma', 'Hma1.2p1_0936F.1_g238900' => 'hma', 'Hma1.2p1_3552F.1_g336740' => 'hma', 'HPP92_003520' => 'vpl', 'HPP92_006628' => 'vpl', 'HPP92_006645' => 'vpl', 'HPP92_014669' => 'vpl', 'HPP92_015077' => 'vpl', 'Hund16742' => 'sun', 'Hund17022' => 'sun', 'Lalb_Chr02g0152131' => 'lal', 'Lalb_Chr05g0225371' => 'lal', 'Lalb_Chr07g0189841' => 'lal', 'Lalb_Chr07g0192961' => 'lal', 'Lalb_Chr12g0208221' => 'lal', 'Lalb_Chr13g0291211' => 'lal', 'Lalb_Chr13g0291781' => 'lal', 'Lalb_Chr18g0044651' => 'lal', 'Lalb_Chr21g0313731' => 'lal', 'Lj1g0022533' => 'lja', 'Lj2A18T50' => 'lonja', 'Lj2A92G93' => 'lonja', 'Lj3A965T73' => 'lonja', 'Lj3g0000673' => 'lja', 'Lj3g0002666' => 'lja', 'Lj4g0016985' => 'lja', 'Lj5g0003625' => 'lja', 'Lj7A529G36' => 'lonja', 'Lj9A569T49' => 'lonja', 'Lj9A604T63' => 'lonja', 'Lsat_1_v5_gn_3_132060' => 'lsa', 'Lsat_1_v5_gn_4_68941' => 'lsa', 'Lsat_1_v5_gn_5_95580' => 'lsa', 'Lsat_1_v5_gn_7_161' => 'lsa', 'Lsat_1_v5_gn_7_7041' => 'lsa', 'Lsat_1_v5_gn_9_33481' => 'lsa', 'Lsat_1_v5_gn_9_68260' => 'lsa', 'Manes.01G073100' => 'mes', 'Manes.01G266300' => 'mes', 'Manes.02G033300' => 'mes', 'Manes.05G017900' => 'mes', 'Manes.05G046100' => 'mes', 'Manes.08G080900' => 'mes', 'Manes.10G049400' => 'mes', 'Mapoly0009s0186' => 'mpo', 'Mapoly0036s0118' => 'mpo', 'Mapoly0101s0046' => 'mpo', 'MBI04_g30218_MAGBIO' => 'mbi', 'MBI04_g35564_MAGBIO' => 'mbi', 'MBI12_g34011_MAGBIO' => 'mbi', 'MBI14_g04655_MAGBIO' => 'mbi', 'MCO07G653' => 'mco', 'MCO10G173' => 'mco', 'MD01G1087100' => 'mdo', 'MD01G1104200' => 'mdo', 'MD02G1205100' => 'mdo', 'MD04G1079200' => 'mdo', 'MD04G1131400' => 'mdo', 'MD07G1121600' => 'mdo', 'MD07G1157300' => 'mdo', 'MD07G1171000' => 'mdo', 'MD12G1144500' => 'mdo', 'Medtr1g094610' => 'mtr', 'Medtr4g021795' => 'mtr', 'Medtr4g023760' => 'mtr', 'Medtr7g118050' => 'mtr', 'MELO3C005582.2' => 'cme', 'MELO3C005989.2' => 'cme', 'MELO3C006192.2' => 'cme', 'MELO3C009248.2' => 'cme', 'MELO3C019817.2' => 'cme', 'Migut.B01625' => 'egut', 'Migut.B01915' => 'egut', 'Migut.F01721' => 'egut', 'Migut.J00314' => 'egut', 'MSTRG.20742' => 'ama', 'MSTRG.8134' => 'ama', 'Nitab4.5_0000096g0010' => 'nta', 'Nitab4.5_0000202g0030' => 'nta', 'Nitab4.5_0000216g0370' => 'nta', 'Nitab4.5_0000457g0230' => 'nta', 'Nitab4.5_0001702g0170' => 'nta', 'Nitab4.5_0003607g0010' => 'nta', 'Nitab4.5_0004917g0020' => 'nta', 'Nitab4.5_0007059g0010' => 'nta', 'Nitab4.5_0007184g0010' => 'nta', 'Nitab4.5_0007346g0020' => 'nta', 'Nn1g00410' => 'nnu', 'Nn1g01252' => 'nnu', 'Nn2g11168' => 'nnu', 'Nn2g13403' => 'nnu', 'Nn2g13760' => 'nnu', 'Nn4g26380' => 'nnu', 'Oeu000806.2' => 'oeu', 'Oeu005788.1' => 'oeu', 'Oeu006900.3' => 'oeu', 'Oeu007797.1' => 'oeu', 'Oeu011932.1' => 'oeu', 'Oeu022739.1' => 'oeu', 'Oeu037918.1' => 'oeu', 'Oeu055490.2' => 'oeu', 'Os01g0844400' => 'osa', 'Os02g0819100' => 'osa', 'Os03g0804300' => 'osa', 'Os05g0458000' => 'osa', 'Os07g0467800' => 'osa', 'Os12g0602200' => 'osa', 'Peaxi162Scf00013g03444' => 'pax', 'Peaxi162Scf00094g01120' => 'pax', 'Peaxi162Scf00191g01211' => 'pax', 'Peaxi162Scf00238g01110' => 'pax', 'Peaxi162Scf00330g00719' => 'pax', 'Peaxi162Scf00627g00018' => 'pax', 'PGR031G2686' => 'pgr', 'PGR042G0809' => 'pgr', 'PGR142G0193' => 'pgr', 'PGSC0003DMG400011066' => 'stu', 'PGSC0003DMG400012041' => 'stu', 'PGSC0003DMG400013678' => 'stu', 'PGSC0003DMG400023477' => 'stu', 'PGSC0003DMG400025956' => 'stu', 'PGSC0003DMG401019151' => 'stu', 'Phvul.006G116400' => 'pvu', 'Phvul.007G097300' => 'pvu', 'Phvul.010G015000' => 'pvu', 'Phvul.010G083900' => 'pvu', 'Potri.001G117100' => 'ptr', 'Potri.002G147300' => 'ptr', 'Potri.003G115600' => 'ptr', 'Potri.006G087400' => 'ptr', 'Potri.010G226100' => 'ptr', 'Potri.014G069200' => 'ptr', 'Potri.014G104000' => 'ptr', 'Potri.016G100200' => 'ptr', 'Pp3c10_20450' => 'ppa', 'Pp3c1_42400' => 'ppa', 'Pp3c3_24390' => 'ppa', 'Pp3c3_2860' => 'ppa', 'PRCOL_00003193' => 'pco', 'Prupe.2G144500' => 'ppe', 'Prupe.2G195700' => 'ppe', 'Prupe.2G209800' => 'ppe', 'Prupe.5G080000' => 'ppe', 'Prupe.6G257900' => 'ppe', 'Psat3g001160' => 'psa', 'Psat6g181880' => 'psa', 'Psat7g233720' => 'psa', 'PSO063G7587' => 'pso', 'PSO339G2145' => 'pso', 'PSO339G3369' => 'pso', 'PSO478G2747' => 'pso', 'PSO513G0140' => 'pso', 'PSO782G1614' => 'pso', 'PSO782G4889' => 'pso', 'PSO782G5485' => 'pso', 'PSO801G0241' => 'pso', 'QL07p048854' => 'qlo', 'QL08p046745' => 'qlo', 'QL08p052606' => 'qlo', 'QL08p053414' => 'qlo', 'QL08p054868' => 'qlo', 'RcHm_v2.0_Chr1g0350251' => 'rch', 'RcHm_v2.0_Chr1g0360851' => 'rch', 'RcHm_v2.0_Chr1g0362791' => 'rch', 'RcHm_v2.0_Chr3g0466281' => 'rch', 'RcHm_v2.0_Chr7g0201481' => 'rch', 'Rhsim01G0148600' => 'rsi', 'Rhsim05G0194400' => 'rsi', 'Rhsim07G0000700' => 'rsi', 'Rhsim07G0000800' => 'rsi', 'Rhsim07G0027900' => 'rsi', 'Rhsim09G0149500' => 'rsi', 'RhsimUnG0186900' => 'rsi', 'Sabra01G0089900' => 'sbr', 'Sabra02G0114700' => 'sbr', 'Sabra02G0116300' => 'sbr', 'Sabra03G0080100' => 'sbr', 'Sabra08G0024300' => 'sbr', 'Sabra10G0174300' => 'sbr', 'Sabra14G0048900' => 'sbr', 'Sabra14G0076500' => 'sbr', 'SalBow5G2513' => 'sbo', 'Sc01g0002300' => 'sci', 'Sc01g0004450' => 'sci', 'Sc06g0001680' => 'sci', 'Sc23g0003580' => 'sci', 'Sed0000913' => 'sed', 'Sed0001655' => 'sed', 'Sed0007745' => 'sed', 'Sed0010951' => 'sed', 'Sed0017599' => 'sed', 'Sed0021405' => 'sed', 'Sed0022810' => 'sed', 'SEGI_07099' => 'sgi', 'SEGI_11931' => 'sgi', 'SEGI_13187' => 'sgi', 'SEGI_29958' => 'sgi', 'SEGI_36351' => 'sgi', 'SGA_v2.0_scaffold126G33770' => 'sas', 'SGA_v2.0_scaffold153G37003' => 'sas', 'SGA_v2.0_scaffold2G01359' => 'sas', 'SGA_v2.0_scaffold5G03064' => 'sas', 'SGA_v2.0_scaffold95G28903' => 'sas', 'SHI12701' => 'shi', 'SHI26410' => 'shi', 'SHI38997' => 'shi', 'SHI53759' => 'shi', 'SHI53886' => 'shi', 'SHI54714' => 'shi', 'SMO011G0041' => 'smo', 'SMO146G0251' => 'smo', 'SMO160G0004' => 'smo', 'SMO174G0057' => 'smo', 'SMO244G0089' => 'smo', 'SMO296G0011' => 'smo', 'Solyc01g091280.3' => 'sly', 'Solyc05g047610.3' => 'sly', 'Solyc05g047640.3' => 'sly', 'Solyc05g055630.3' => 'sly', 'Solyc10g018160.2' => 'sly', 'Solyc10g084820.2' => 'sly', 'Solyc10g086565.2' => 'sly', 'Sopen01g037030' => 'spe', 'Sopen05g027920' => 'spe', 'Sopen05g034070' => 'spe', 'Sopen10g007260' => 'spe', 'Sopen10g034260' => 'spe', 'Sopen10g035950' => 'spe', 'Sp3g07710' => 'spa', 'Sp4g27420' => 'spa', 'Sp5g02450' => 'spa', 'Sp6g01280' => 'spa', 'Sp6g38480' => 'spa', 'Sp7g20780' => 'spa', 'TAR374G1413' => 'tar', 'TAR623G1777' => 'tar', 'TAR629G2370' => 'tar', 'TAR633G1759' => 'tar', 'TAR636G3387' => 'tar', 'THA.LOC104802447' => 'tha', 'THA.LOC104813916' => 'tha', 'THA.LOC104816423' => 'tha', 'THA.LOC104817246' => 'tha', 'THA.LOC104825895' => 'tha', 'Thecc.01G335200' => 'tca', 'Thecc.01G377400' => 'tca', 'Thecc.03G262200' => 'tca', 'Thecc.05G036800' => 'tca', 'Thecc.10G080500' => 'tca', 'Thecc.10G080800' => 'tca', 'Thhalv10001560m.g' => 'esa', 'Thhalv10006120m.g' => 'esa', 'Thhalv10014375m.g' => 'esa', 'Thhalv10021264m.g' => 'esa', 'Thhalv10028856m.g' => 'esa', 'TPR.G1914' => 'tpr', 'TPR.G4757' => 'tpr', 'TPR.G5595' => 'tpr', 'TWI14G0952' => 'twi', 'TWI14G1307' => 'twi', 'TWI38G2143' => 'twi', 'TWI59G0826' => 'twi', 'TWI77G0527' => 'twi', 'TWI81G0150' => 'twi', 'unitig_21.g21018' => 'ugi', 'unitig_26.g9725' => 'ugi', 'unitig_744.g24653' => 'ugi', 'unitig_749.g13778' => 'ugi', 'unitig_899.g15035' => 'ugi', 'vmacro04296' => 'vma', 'vmacro04852' => 'vma', 'vmacro13404' => 'vma', 'vmacro20169' => 'vma', 'vmacro21014' => 'vma', 'VMungo0331G0237' => 'vmu', 'VMungo0331G0706' => 'vmu', 'VMungo0331G1361' => 'vmu', 'VMungo0331G1489' => 'vmu', 'VMungo0540G1037' => 'vmu', 'VMungo0720G2487' => 'vmu', 'VMungo0720G2721' => 'vmu', 'Zm00001eb086860' => 'zma', 'Zm00001eb104760' => 'zma', 'Zm00001eb148220' => 'zma', 'Zm00001eb259030' => 'zma', 'Zm00001eb289590' => 'zma', 'Zm00001eb420150' => 'zma' ), 'gf_id' => 'HOM05D000968', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000968' ), 'data_identifier' => 'HOM05D000968', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000968', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p31690' => 'bna', 'A03p36040' => 'bna', 'A03p53730' => 'bna', 'A04p01410' => 'bna', 'A05p05420' => 'bna', 'A05p39630' => 'bna', 'A05p39640' => 'bna', 'A09p00970' => 'bna', 'A09p53060' => 'bna', 'A10p31890' => 'bna', 'Aa31LG10G15040' => 'aar', 'Aa31LG1G21090' => 'aar', 'Aa31LG1G26900' => 'aar', 'Aa31LG3G1820' => 'aar', 'Aa31LG5G1100' => 'aar', 'Aa31LG6G4740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2265' => 'aag', 'Actinidia07998' => 'ach', 'Actinidia11266' => 'ach', 'Actinidia12682' => 'ach', 'Actinidia26479' => 'ach', 'Actinidia31406' => 'ach', 'Actinidia32437' => 'ach', 'Actinidia38862' => 'ach', 'Ah.05g174230' => 'amhyb', 'Ah.05g179070' => 'amhyb', 'Ah.05g179090' => 'amhyb', 'Ah.12g059950' => 'amhyb', 'AL3G20480' => 'aly', 'AL4G44520' => 'aly', 'AL5G43110' => 'aly', 'AL6G13890' => 'aly', 'AL6G52620' => 'aly', 'AL7G30830' => 'aly', 'Aqoxy1G00899' => 'aox', 'Aqoxy5G04333' => 'aox', 'Aqoxy7G00641' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3IZ0NN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4EF6AW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W9P8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79GA3M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C43NQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFCU6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G95YVJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCHK29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LU1UG8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX91RN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGB4B1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8DA0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9H7JI' => 'arhy', 'AT3G09320' => 'ath', 'AT3G60800' => 'ath', 'AT4G00840' => 'ath', 'AT4G22750' => 'ath', 'AT5G04270' => 'ath', 'ATR0090G003' => 'atr', 'ATR0559G349' => 'atr', 'ATR0680G261' => 'atr', 'ATR0810G048' => 'atr', 'Atru.chr12.831' => 'acertr', 'Atru.chr5.303' => 'acertr', 'Atru.chr5.748' => 'acertr', 'Atru.chr8.1999' => 'acertr', 'Atru.chr9.1436' => 'acertr', 'AUR62004211' => 'cqu', 'AUR62004548' => 'cqu', 'AUR62013637' => 'cqu', 'AUR62022662' => 'cqu', 'AUR62025777' => 'cqu', 'AUR62042386' => 'cqu', 'BcaB01g02310' => 'bca', 'BcaB01g06062' => 'bca', 'BcaB02g08975' => 'bca', 'BcaB02g08980' => 'bca', 'BcaC01g04228' => 'bca', 'BcaC01g06830' => 'bca', 'BcaC02g10186' => 'bca', 'BcaC02g12214' => 'bca', 'BcaC04g24101' => 'bca', 'BcaC05g29520' => 'bca', 'BcaC05g29661' => 'bca', 'BcaC06g32130' => 'bca', 'BcaC06g32131' => 'bca', 'BcaC07g40601' => 'bca', 'BcaC07g42641' => 'bca', 'BcaNung01038' => 'bca', 'BcaNung01676' => 'bca', 'BcaNung02480' => 'bca', 'BcaNung07376' => 'bca', 'BolC3t16146H' => 'bol', 'BolC3t16637H' => 'bol', 'BolC4t22257H' => 'bol', 'BolC4t24728H' => 'bol', 'BolC5t34517H' => 'bol', 'BolC7t45703H' => 'bol', 'BolC8t51166H' => 'bol', 'BolC9t53038H' => 'bol', 'BolC9t60000H' => 'bol', 'BraA01t01345Z' => 'bra', 'BraA01t01346Z' => 'bra', 'BraA01t01348Z' => 'bra', 'BraA03t12347Z' => 'bra', 'BraA03t12775Z' => 'bra', 'BraA03t14439Z' => 'bra', 'BraA04t15860Z' => 'bra', 'BraA05t19511Z' => 'bra', 'BraA05t22746Z' => 'bra', 'BraA09t35767Z' => 'bra', 'BraA09t40732Z' => 'bra', 'BraA10t45233Z' => 'bra', 'C03p38720' => 'bna', 'C03p43680' => 'bna', 'C04p06350' => 'bna', 'C04p31800' => 'bna', 'C05p58680' => 'bna', 'C07p52110' => 'bna', 'C08p35760' => 'bna', 'C09p01050' => 'bna', 'C09p72600' => 'bna', 'CAN.G106.2' => 'can', 'CAN.G1482.1' => 'can', 'CAN.G324.12' => 'can', 'CAN.G388.20' => 'can', 'CAN.G412.7' => 'can', 'CAN.G694.32' => 'can', 'CAN.G92.12' => 'can', 'CANSAT11G2353' => 'cansat', 'CANSAT21G1398' => 'cansat', 'CANSAT56G2456' => 'cansat', 'CANSAT56G3031' => 'cansat', 'CANSAT56G4539' => 'cansat', 'CARHR083680' => 'chi', 'CARHR171190' => 'chi', 'CARHR209010' => 'chi', 'CARHR229680' => 'chi', 'CARHR249490' => 'chi', 'Carub.0003s0844' => 'cru', 'Carub.0005s2755' => 'cru', 'Carub.0006s0322' => 'cru', 'Carub.0006s3586' => 'cru', 'Carub.0007s1855' => 'cru', 'Ca_07808_v3' => 'car', 'Ca_09535_v3' => 'car', 'Ca_10548_v3' => 'car', 'Ca_19913_v3' => 'car', 'Ca_19916_v3' => 'car', 'Ca_19975_v3' => 'car', 'CBR_g22876' => 'cbr', 'CBR_g22879' => 'cbr', 'CBR_g38491' => 'cbr', 'CBR_g54185' => 'cbr', 'CBR_g54190' => 'cbr', 'Cc02_g11020' => 'ccan', 'Cc02_g23920' => 'ccan', 'Cc02_g39860' => 'ccan', 'Cc02_g39870' => 'ccan', 'Cc03_g06760' => 'ccan', 'Cc06_g02450' => 'ccan', 'Cc09_g09450' => 'ccan', 'CDE02G1959' => 'cde', 'CDE04G0600' => 'cde', 'CDE07G1996' => 'cde', 'CDE07G2078' => 'cde', 'CDE11G0611' => 'cde', 'Cfa001683' => 'cfa', 'Cfa001734' => 'cfa', 'Cfa001737' => 'cfa', 'Cfa003751' => 'cfa', 'Cfa012019' => 'cfa', 'Cfa017353' => 'cfa', 'Cfa017732' => 'cfa', 'Cfa022464' => 'cfa', 'Ciclev10012400m.g' => 'ccl', 'Ciclev10021242m.g' => 'ccl', 'Ciclev10021302m.g' => 'ccl', 'Ciclev10021463m.g' => 'ccl', 'Ciclev10032359m.g' => 'ccl', 'CiPaw.01G081000' => 'cil', 'CiPaw.01G262500' => 'cil', 'CiPaw.01G269800' => 'cil', 'CiPaw.02G168400' => 'cil', 'CiPaw.05G119500' => 'cil', 'CiPaw.11G147300' => 'cil', 'ClCG01G003630' => 'cla', 'ClCG05G000510' => 'cla', 'ClCG05G002300' => 'cla', 'ClCG08G007650' => 'cla', 'ClCG10G021250' => 'cla', 'COL.COLO4_06218' => 'col', 'COL.COLO4_12538' => 'col', 'COL.COLO4_14775' => 'col', 'COL.COLO4_23875' => 'col', 'Cpa.g.sc141.16' => 'cpa', 'Cpa.g.sc169.16' => 'cpa', 'Cpa.g.sc244.4' => 'cpa', 'Cpa.g.sc244.5' => 'cpa', 'Cpa.g.sc29.87' => 'cpa', 'Cpa.g.sc53.115' => 'cpa', 'Cre03.g207502' => 'cre', 'Cre06.g277000' => 'cre', 'Cre09.g394050' => 'cre', 'CsaV3_3G007680' => 'csa', 'CsaV3_3G009710' => 'csa', 'CsaV3_3G034790' => 'csa', 'CsaV3_5G003750' => 'csa', 'CsaV3_6G036620' => 'csa', 'CSS0002288' => 'camsi', 'CSS0011250' => 'camsi', 'CSS0021619' => 'camsi', 'CSS0046701' => 'camsi', 'DCAR_006420' => 'dca', 'DCAR_006865' => 'dca', 'DCAR_008558' => 'dca', 'DCAR_028754' => 'dca', 'DCAR_028755' => 'dca', 'Dinv31218' => 'din', 'Dinv32371' => 'din', 'Dinv34250' => 'din', 'Dinv37156' => 'din', 'Dinv43704' => 'din', 'Duzib093G1811' => 'dzi', 'Duzib106G1622' => 'dzi', 'Duzib114G0504' => 'dzi', 'Duzib128G0338' => 'dzi', 'Duzib128G1577' => 'dzi', 'Duzib133G0104' => 'dzi', 'Duzib133G1080' => 'dzi', 'Duzib138G0324' => 'dzi', 'Duzib138G0394' => 'dzi', 'Duzib205G0122' => 'dzi', 'Duzib268G1020' => 'dzi', 'Duzib268G1359' => 'dzi', 'ECA232G3929' => 'eca', 'ECA236G2210' => 'eca', 'ECA236G2287' => 'eca', 'ECA240G4568' => 'eca', 'ECA247G0894' => 'eca', 'EL10Ac1g00200' => 'bvu', 'EL10Ac1g00886' => 'bvu', 'EL10As1g23091' => 'bvu', 'EL10As1g23092' => 'bvu', 'Eucgr.A01284' => 'egr', 'Eucgr.A01285' => 'egr', 'Eucgr.D02456' => 'egr', 'Eucgr.E00018' => 'egr', 'Eucgr.E01439' => 'egr', 'Eucgr.G02859' => 'egr', 'FAN01G0168' => 'fan', 'FAN01G0453' => 'fan', 'FAN01G2761' => 'fan', 'FAN02G1239' => 'fan', 'FAN03G0645' => 'fan', 'FAN03G2707' => 'fan', 'FAN03G2978' => 'fan', 'FAN04G0227' => 'fan', 'FAN06G0091' => 'fan', 'FAN06G1418' => 'fan', 'FAN06G1512' => 'fan', 'FAN06G1986' => 'fan', 'FAN06G2905' => 'fan', 'FAN06G4325' => 'fan', 'FAN08G0033' => 'fan', 'FAN09G0642' => 'fan', 'FAN10G1763' => 'fan', 'FAN10G2026' => 'fan', 'FAN10G2513' => 'fan', 'FAN10G3402' => 'fan', 'FAN10G3564' => 'fan', 'FAN10G3987' => 'fan', 'FAN13G1490' => 'fan', 'FAN14G5857' => 'fan', 'FAN18G1188' => 'fan', 'FvH4_5g00750' => 'fve', 'FvH4_6g13410' => 'fve', 'FvH4_7g11740' => 'fve', 'FvH4_7g17410' => 'fve', 'FvH4_7g18860' => 'fve', 'Glyma.01G099100' => 'gma', 'Glyma.01G142300' => 'gma', 'Glyma.03G025500' => 'gma', 'Glyma.03G069700' => 'gma', 'Glyma.03G260000' => 'gma', 'Glyma.09G269800' => 'gma', 'Glyma.10G208700' => 'gma', 'Glyma.18G220400' => 'gma', 'Glyma.20G182000' => 'gma', 'Gohir.A01G221726' => 'ghi', 'Gohir.A07G134600' => 'ghi', 'Gohir.A07G146000' => 'ghi', 'Gohir.A08G173900' => 'ghi', 'Gohir.A09G194900' => 'ghi', 'Gohir.A10G204100' => 'ghi', 'Gohir.A11G080600' => 'ghi', 'Gohir.A11G327500' => 'ghi', 'Gohir.A12G101800' => 'ghi', 'Gohir.D01G211200' => 'ghi', 'Gohir.D07G139200' => 'ghi', 'Gohir.D07G152100' => 'ghi', 'Gohir.D08G192600' => 'ghi', 'Gohir.D09G189200' => 'ghi', 'Gohir.D10G212000' => 'ghi', 'Gohir.D11G085200' => 'ghi', 'Gohir.D11G346400' => 'ghi', 'Gohir.D12G104800' => 'ghi', 'Gorai.001G151300' => 'gra', 'Gorai.001G174100' => 'gra', 'Gorai.002G257000' => 'gra', 'Gorai.004G202600' => 'gra', 'Gorai.007G090900' => 'gra', 'Gorai.007G376700' => 'gra', 'Gorai.008G114100' => 'gra', 'Gorai.011G237900' => 'gra', 'GSVIVG01005450001' => 'vvi', 'GSVIVG01016232001' => 'vvi', 'GSVIVG01026157001' => 'vvi', 'GSVIVG01027419001' => 'vvi', 'GSVIVG01027631001' => 'vvi', 'GSVIVG01034143001' => 'vvi', 'HanXRQChr03g0093921' => 'han', 'HanXRQChr04g0120001' => 'han', 'HanXRQChr04g0122561' => 'han', 'HanXRQChr09g0246851' => 'han', 'HanXRQChr10g0293311' => 'han', 'HanXRQChr13g0425231' => 'han', 'HanXRQChr16g0532571' => 'han', 'Haze_09050' => 'cav', 'Haze_15715' => 'cav', 'Haze_15716' => 'cav', 'Haze_16803' => 'cav', 'Haze_16850' => 'cav', 'Hma1.2p1_0301F.1_g118655' => 'hma', 'Hma1.2p1_0309F.1_g120590' => 'hma', 'Hma1.2p1_0936F.1_g238900' => 'hma', 'Hma1.2p1_3552F.1_g336740' => 'hma', 'HPP92_003520' => 'vpl', 'HPP92_006628' => 'vpl', 'HPP92_006645' => 'vpl', 'HPP92_014669' => 'vpl', 'HPP92_015077' => 'vpl', 'Hund16742' => 'sun', 'Hund17022' => 'sun', 'Lalb_Chr02g0152131' => 'lal', 'Lalb_Chr05g0225371' => 'lal', 'Lalb_Chr07g0189841' => 'lal', 'Lalb_Chr07g0192961' => 'lal', 'Lalb_Chr12g0208221' => 'lal', 'Lalb_Chr13g0291211' => 'lal', 'Lalb_Chr13g0291781' => 'lal', 'Lalb_Chr18g0044651' => 'lal', 'Lalb_Chr21g0313731' => 'lal', 'Lj1g0022533' => 'lja', 'Lj2A18T50' => 'lonja', 'Lj2A92G93' => 'lonja', 'Lj3A965T73' => 'lonja', 'Lj3g0000673' => 'lja', 'Lj3g0002666' => 'lja', 'Lj4g0016985' => 'lja', 'Lj5g0003625' => 'lja', 'Lj7A529G36' => 'lonja', 'Lj9A569T49' => 'lonja', 'Lj9A604T63' => 'lonja', 'Lsat_1_v5_gn_3_132060' => 'lsa', 'Lsat_1_v5_gn_4_68941' => 'lsa', 'Lsat_1_v5_gn_5_95580' => 'lsa', 'Lsat_1_v5_gn_7_161' => 'lsa', 'Lsat_1_v5_gn_7_7041' => 'lsa', 'Lsat_1_v5_gn_9_33481' => 'lsa', 'Lsat_1_v5_gn_9_68260' => 'lsa', 'Manes.01G073100' => 'mes', 'Manes.01G266300' => 'mes', 'Manes.02G033300' => 'mes', 'Manes.05G017900' => 'mes', 'Manes.05G046100' => 'mes', 'Manes.08G080900' => 'mes', 'Manes.10G049400' => 'mes', 'Mapoly0009s0186' => 'mpo', 'Mapoly0036s0118' => 'mpo', 'Mapoly0101s0046' => 'mpo', 'MBI04_g30218_MAGBIO' => 'mbi', 'MBI04_g35564_MAGBIO' => 'mbi', 'MBI12_g34011_MAGBIO' => 'mbi', 'MBI14_g04655_MAGBIO' => 'mbi', 'MCO07G653' => 'mco', 'MCO10G173' => 'mco', 'MD01G1087100' => 'mdo', 'MD01G1104200' => 'mdo', 'MD02G1205100' => 'mdo', 'MD04G1079200' => 'mdo', 'MD04G1131400' => 'mdo', 'MD07G1121600' => 'mdo', 'MD07G1157300' => 'mdo', 'MD07G1171000' => 'mdo', 'MD12G1144500' => 'mdo', 'Medtr1g094610' => 'mtr', 'Medtr4g021795' => 'mtr', 'Medtr4g023760' => 'mtr', 'Medtr7g118050' => 'mtr', 'MELO3C005582.2' => 'cme', 'MELO3C005989.2' => 'cme', 'MELO3C006192.2' => 'cme', 'MELO3C009248.2' => 'cme', 'MELO3C019817.2' => 'cme', 'Migut.B01625' => 'egut', 'Migut.B01915' => 'egut', 'Migut.F01721' => 'egut', 'Migut.J00314' => 'egut', 'MSTRG.20742' => 'ama', 'MSTRG.8134' => 'ama', 'Nitab4.5_0000096g0010' => 'nta', 'Nitab4.5_0000202g0030' => 'nta', 'Nitab4.5_0000216g0370' => 'nta', 'Nitab4.5_0000457g0230' => 'nta', 'Nitab4.5_0001702g0170' => 'nta', 'Nitab4.5_0003607g0010' => 'nta', 'Nitab4.5_0004917g0020' => 'nta', 'Nitab4.5_0007059g0010' => 'nta', 'Nitab4.5_0007184g0010' => 'nta', 'Nitab4.5_0007346g0020' => 'nta', 'Nn1g00410' => 'nnu', 'Nn1g01252' => 'nnu', 'Nn2g11168' => 'nnu', 'Nn2g13403' => 'nnu', 'Nn2g13760' => 'nnu', 'Nn4g26380' => 'nnu', 'Oeu000806.2' => 'oeu', 'Oeu005788.1' => 'oeu', 'Oeu006900.3' => 'oeu', 'Oeu007797.1' => 'oeu', 'Oeu011932.1' => 'oeu', 'Oeu022739.1' => 'oeu', 'Oeu037918.1' => 'oeu', 'Oeu055490.2' => 'oeu', 'Os01g0844400' => 'osa', 'Os02g0819100' => 'osa', 'Os03g0804300' => 'osa', 'Os05g0458000' => 'osa', 'Os07g0467800' => 'osa', 'Os12g0602200' => 'osa', 'Peaxi162Scf00013g03444' => 'pax', 'Peaxi162Scf00094g01120' => 'pax', 'Peaxi162Scf00191g01211' => 'pax', 'Peaxi162Scf00238g01110' => 'pax', 'Peaxi162Scf00330g00719' => 'pax', 'Peaxi162Scf00627g00018' => 'pax', 'PGR031G2686' => 'pgr', 'PGR042G0809' => 'pgr', 'PGR142G0193' => 'pgr', 'PGSC0003DMG400011066' => 'stu', 'PGSC0003DMG400012041' => 'stu', 'PGSC0003DMG400013678' => 'stu', 'PGSC0003DMG400023477' => 'stu', 'PGSC0003DMG400025956' => 'stu', 'PGSC0003DMG401019151' => 'stu', 'Phvul.006G116400' => 'pvu', 'Phvul.007G097300' => 'pvu', 'Phvul.010G015000' => 'pvu', 'Phvul.010G083900' => 'pvu', 'Potri.001G117100' => 'ptr', 'Potri.002G147300' => 'ptr', 'Potri.003G115600' => 'ptr', 'Potri.006G087400' => 'ptr', 'Potri.010G226100' => 'ptr', 'Potri.014G069200' => 'ptr', 'Potri.014G104000' => 'ptr', 'Potri.016G100200' => 'ptr', 'Pp3c10_20450' => 'ppa', 'Pp3c1_42400' => 'ppa', 'Pp3c3_24390' => 'ppa', 'Pp3c3_2860' => 'ppa', 'PRCOL_00003193' => 'pco', 'Prupe.2G144500' => 'ppe', 'Prupe.2G195700' => 'ppe', 'Prupe.2G209800' => 'ppe', 'Prupe.5G080000' => 'ppe', 'Prupe.6G257900' => 'ppe', 'Psat3g001160' => 'psa', 'Psat6g181880' => 'psa', 'Psat7g233720' => 'psa', 'PSO063G7587' => 'pso', 'PSO339G2145' => 'pso', 'PSO339G3369' => 'pso', 'PSO478G2747' => 'pso', 'PSO513G0140' => 'pso', 'PSO782G1614' => 'pso', 'PSO782G4889' => 'pso', 'PSO782G5485' => 'pso', 'PSO801G0241' => 'pso', 'QL07p048854' => 'qlo', 'QL08p046745' => 'qlo', 'QL08p052606' => 'qlo', 'QL08p053414' => 'qlo', 'QL08p054868' => 'qlo', 'RcHm_v2.0_Chr1g0350251' => 'rch', 'RcHm_v2.0_Chr1g0360851' => 'rch', 'RcHm_v2.0_Chr1g0362791' => 'rch', 'RcHm_v2.0_Chr3g0466281' => 'rch', 'RcHm_v2.0_Chr7g0201481' => 'rch', 'Rhsim01G0148600' => 'rsi', 'Rhsim05G0194400' => 'rsi', 'Rhsim07G0000700' => 'rsi', 'Rhsim07G0000800' => 'rsi', 'Rhsim07G0027900' => 'rsi', 'Rhsim09G0149500' => 'rsi', 'RhsimUnG0186900' => 'rsi', 'Sabra01G0089900' => 'sbr', 'Sabra02G0114700' => 'sbr', 'Sabra02G0116300' => 'sbr', 'Sabra03G0080100' => 'sbr', 'Sabra08G0024300' => 'sbr', 'Sabra10G0174300' => 'sbr', 'Sabra14G0048900' => 'sbr', 'Sabra14G0076500' => 'sbr', 'SalBow5G2513' => 'sbo', 'Sc01g0002300' => 'sci', 'Sc01g0004450' => 'sci', 'Sc06g0001680' => 'sci', 'Sc23g0003580' => 'sci', 'Sed0000913' => 'sed', 'Sed0001655' => 'sed', 'Sed0007745' => 'sed', 'Sed0010951' => 'sed', 'Sed0017599' => 'sed', 'Sed0021405' => 'sed', 'Sed0022810' => 'sed', 'SEGI_07099' => 'sgi', 'SEGI_11931' => 'sgi', 'SEGI_13187' => 'sgi', 'SEGI_29958' => 'sgi', 'SEGI_36351' => 'sgi', 'SGA_v2.0_scaffold126G33770' => 'sas', 'SGA_v2.0_scaffold153G37003' => 'sas', 'SGA_v2.0_scaffold2G01359' => 'sas', 'SGA_v2.0_scaffold5G03064' => 'sas', 'SGA_v2.0_scaffold95G28903' => 'sas', 'SHI12701' => 'shi', 'SHI26410' => 'shi', 'SHI38997' => 'shi', 'SHI53759' => 'shi', 'SHI53886' => 'shi', 'SHI54714' => 'shi', 'SMO011G0041' => 'smo', 'SMO146G0251' => 'smo', 'SMO160G0004' => 'smo', 'SMO174G0057' => 'smo', 'SMO244G0089' => 'smo', 'SMO296G0011' => 'smo', 'Solyc01g091280.3' => 'sly', 'Solyc05g047610.3' => 'sly', 'Solyc05g047640.3' => 'sly', 'Solyc05g055630.3' => 'sly', 'Solyc10g018160.2' => 'sly', 'Solyc10g084820.2' => 'sly', 'Solyc10g086565.2' => 'sly', 'Sopen01g037030' => 'spe', 'Sopen05g027920' => 'spe', 'Sopen05g034070' => 'spe', 'Sopen10g007260' => 'spe', 'Sopen10g034260' => 'spe', 'Sopen10g035950' => 'spe', 'Sp3g07710' => 'spa', 'Sp4g27420' => 'spa', 'Sp5g02450' => 'spa', 'Sp6g01280' => 'spa', 'Sp6g38480' => 'spa', 'Sp7g20780' => 'spa', 'TAR374G1413' => 'tar', 'TAR623G1777' => 'tar', 'TAR629G2370' => 'tar', 'TAR633G1759' => 'tar', 'TAR636G3387' => 'tar', 'THA.LOC104802447' => 'tha', 'THA.LOC104813916' => 'tha', 'THA.LOC104816423' => 'tha', 'THA.LOC104817246' => 'tha', 'THA.LOC104825895' => 'tha', 'Thecc.01G335200' => 'tca', 'Thecc.01G377400' => 'tca', 'Thecc.03G262200' => 'tca', 'Thecc.05G036800' => 'tca', 'Thecc.10G080500' => 'tca', 'Thecc.10G080800' => 'tca', 'Thhalv10001560m.g' => 'esa', 'Thhalv10006120m.g' => 'esa', 'Thhalv10014375m.g' => 'esa', 'Thhalv10021264m.g' => 'esa', 'Thhalv10028856m.g' => 'esa', 'TPR.G1914' => 'tpr', 'TPR.G4757' => 'tpr', 'TPR.G5595' => 'tpr', 'TWI14G0952' => 'twi', 'TWI14G1307' => 'twi', 'TWI38G2143' => 'twi', 'TWI59G0826' => 'twi', 'TWI77G0527' => 'twi', 'TWI81G0150' => 'twi', 'unitig_21.g21018' => 'ugi', 'unitig_26.g9725' => 'ugi', 'unitig_744.g24653' => 'ugi', 'unitig_749.g13778' => 'ugi', 'unitig_899.g15035' => 'ugi', 'vmacro04296' => 'vma', 'vmacro04852' => 'vma', 'vmacro13404' => 'vma', 'vmacro20169' => 'vma', 'vmacro21014' => 'vma', 'VMungo0331G0237' => 'vmu', 'VMungo0331G0706' => 'vmu', 'VMungo0331G1361' => 'vmu', 'VMungo0331G1489' => 'vmu', 'VMungo0540G1037' => 'vmu', 'VMungo0720G2487' => 'vmu', 'VMungo0720G2721' => 'vmu', 'Zm00001eb086860' => 'zma', 'Zm00001eb104760' => 'zma', 'Zm00001eb148220' => 'zma', 'Zm00001eb259030' => 'zma', 'Zm00001eb289590' => 'zma', 'Zm00001eb420150' => 'zma' ) $gf_id = 'HOM05D000968' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000968' ) $data_identifier = 'HOM05D000968' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 19, 'bol' => (int) 9, 'bra' => (int) 12, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 5, 'ccan' => (int) 7, 'cde' => (int) 5, 'cfa' => (int) 8, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 4, 'dca' => (int) 5, 'din' => (int) 5, 'dzi' => (int) 12, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 25, 'fve' => (int) 5, 'gma' => (int) 9, 'ghi' => (int) 18, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 7, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 5, 'sun' => (int) 2, 'lal' => (int) 9, 'lja' => (int) 5, 'lonja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 9, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 2, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 3, 'stu' => (int) 6, 'pvu' => (int) 4, 'ptr' => (int) 8, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 3, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 1, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 5, 'sas' => (int) 5, 'shi' => (int) 6, 'smo' => (int) 6, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 3, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420150' $species_info = array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ) $local_species = 'lonja' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000968', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p31690' => 'bna', 'A03p36040' => 'bna', 'A03p53730' => 'bna', 'A04p01410' => 'bna', 'A05p05420' => 'bna', 'A05p39630' => 'bna', 'A05p39640' => 'bna', 'A09p00970' => 'bna', 'A09p53060' => 'bna', 'A10p31890' => 'bna', 'Aa31LG10G15040' => 'aar', 'Aa31LG1G21090' => 'aar', 'Aa31LG1G26900' => 'aar', 'Aa31LG3G1820' => 'aar', 'Aa31LG5G1100' => 'aar', 'Aa31LG6G4740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2265' => 'aag', 'Actinidia07998' => 'ach', 'Actinidia11266' => 'ach', 'Actinidia12682' => 'ach', 'Actinidia26479' => 'ach', 'Actinidia31406' => 'ach', 'Actinidia32437' => 'ach', 'Actinidia38862' => 'ach', 'Ah.05g174230' => 'amhyb', 'Ah.05g179070' => 'amhyb', 'Ah.05g179090' => 'amhyb', 'Ah.12g059950' => 'amhyb', 'AL3G20480' => 'aly', 'AL4G44520' => 'aly', 'AL5G43110' => 'aly', 'AL6G13890' => 'aly', 'AL6G52620' => 'aly', 'AL7G30830' => 'aly', 'Aqoxy1G00899' => 'aox', 'Aqoxy5G04333' => 'aox', 'Aqoxy7G00641' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3IZ0NN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4EF6AW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W9P8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79GA3M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C43NQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFCU6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G95YVJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCHK29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LU1UG8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX91RN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGB4B1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8DA0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9H7JI' => 'arhy', 'AT3G09320' => 'ath', 'AT3G60800' => 'ath', 'AT4G00840' => 'ath', 'AT4G22750' => 'ath', 'AT5G04270' => 'ath', 'ATR0090G003' => 'atr', 'ATR0559G349' => 'atr', 'ATR0680G261' => 'atr', 'ATR0810G048' => 'atr', 'Atru.chr12.831' => 'acertr', 'Atru.chr5.303' => 'acertr', 'Atru.chr5.748' => 'acertr', 'Atru.chr8.1999' => 'acertr', 'Atru.chr9.1436' => 'acertr', 'AUR62004211' => 'cqu', 'AUR62004548' => 'cqu', 'AUR62013637' => 'cqu', 'AUR62022662' => 'cqu', 'AUR62025777' => 'cqu', 'AUR62042386' => 'cqu', 'BcaB01g02310' => 'bca', 'BcaB01g06062' => 'bca', 'BcaB02g08975' => 'bca', 'BcaB02g08980' => 'bca', 'BcaC01g04228' => 'bca', 'BcaC01g06830' => 'bca', 'BcaC02g10186' => 'bca', 'BcaC02g12214' => 'bca', 'BcaC04g24101' => 'bca', 'BcaC05g29520' => 'bca', 'BcaC05g29661' => 'bca', 'BcaC06g32130' => 'bca', 'BcaC06g32131' => 'bca', 'BcaC07g40601' => 'bca', 'BcaC07g42641' => 'bca', 'BcaNung01038' => 'bca', 'BcaNung01676' => 'bca', 'BcaNung02480' => 'bca', 'BcaNung07376' => 'bca', 'BolC3t16146H' => 'bol', 'BolC3t16637H' => 'bol', 'BolC4t22257H' => 'bol', 'BolC4t24728H' => 'bol', 'BolC5t34517H' => 'bol', 'BolC7t45703H' => 'bol', 'BolC8t51166H' => 'bol', 'BolC9t53038H' => 'bol', 'BolC9t60000H' => 'bol', 'BraA01t01345Z' => 'bra', 'BraA01t01346Z' => 'bra', 'BraA01t01348Z' => 'bra', 'BraA03t12347Z' => 'bra', 'BraA03t12775Z' => 'bra', 'BraA03t14439Z' => 'bra', 'BraA04t15860Z' => 'bra', 'BraA05t19511Z' => 'bra', 'BraA05t22746Z' => 'bra', 'BraA09t35767Z' => 'bra', 'BraA09t40732Z' => 'bra', 'BraA10t45233Z' => 'bra', 'C03p38720' => 'bna', 'C03p43680' => 'bna', 'C04p06350' => 'bna', 'C04p31800' => 'bna', 'C05p58680' => 'bna', 'C07p52110' => 'bna', 'C08p35760' => 'bna', 'C09p01050' => 'bna', 'C09p72600' => 'bna', 'CAN.G106.2' => 'can', 'CAN.G1482.1' => 'can', 'CAN.G324.12' => 'can', 'CAN.G388.20' => 'can', 'CAN.G412.7' => 'can', 'CAN.G694.32' => 'can', 'CAN.G92.12' => 'can', 'CANSAT11G2353' => 'cansat', 'CANSAT21G1398' => 'cansat', 'CANSAT56G2456' => 'cansat', 'CANSAT56G3031' => 'cansat', 'CANSAT56G4539' => 'cansat', 'CARHR083680' => 'chi', 'CARHR171190' => 'chi', 'CARHR209010' => 'chi', 'CARHR229680' => 'chi', 'CARHR249490' => 'chi', 'Carub.0003s0844' => 'cru', 'Carub.0005s2755' => 'cru', 'Carub.0006s0322' => 'cru', 'Carub.0006s3586' => 'cru', 'Carub.0007s1855' => 'cru', 'Ca_07808_v3' => 'car', 'Ca_09535_v3' => 'car', 'Ca_10548_v3' => 'car', 'Ca_19913_v3' => 'car', 'Ca_19916_v3' => 'car', 'Ca_19975_v3' => 'car', 'CBR_g22876' => 'cbr', 'CBR_g22879' => 'cbr', 'CBR_g38491' => 'cbr', 'CBR_g54185' => 'cbr', 'CBR_g54190' => 'cbr', 'Cc02_g11020' => 'ccan', 'Cc02_g23920' => 'ccan', 'Cc02_g39860' => 'ccan', 'Cc02_g39870' => 'ccan', 'Cc03_g06760' => 'ccan', 'Cc06_g02450' => 'ccan', 'Cc09_g09450' => 'ccan', 'CDE02G1959' => 'cde', 'CDE04G0600' => 'cde', 'CDE07G1996' => 'cde', 'CDE07G2078' => 'cde', 'CDE11G0611' => 'cde', 'Cfa001683' => 'cfa', 'Cfa001734' => 'cfa', 'Cfa001737' => 'cfa', 'Cfa003751' => 'cfa', 'Cfa012019' => 'cfa', 'Cfa017353' => 'cfa', 'Cfa017732' => 'cfa', 'Cfa022464' => 'cfa', 'Ciclev10012400m.g' => 'ccl', 'Ciclev10021242m.g' => 'ccl', 'Ciclev10021302m.g' => 'ccl', 'Ciclev10021463m.g' => 'ccl', 'Ciclev10032359m.g' => 'ccl', 'CiPaw.01G081000' => 'cil', 'CiPaw.01G262500' => 'cil', 'CiPaw.01G269800' => 'cil', 'CiPaw.02G168400' => 'cil', 'CiPaw.05G119500' => 'cil', 'CiPaw.11G147300' => 'cil', 'ClCG01G003630' => 'cla', 'ClCG05G000510' => 'cla', 'ClCG05G002300' => 'cla', 'ClCG08G007650' => 'cla', 'ClCG10G021250' => 'cla', 'COL.COLO4_06218' => 'col', 'COL.COLO4_12538' => 'col', 'COL.COLO4_14775' => 'col', 'COL.COLO4_23875' => 'col', 'Cpa.g.sc141.16' => 'cpa', 'Cpa.g.sc169.16' => 'cpa', 'Cpa.g.sc244.4' => 'cpa', 'Cpa.g.sc244.5' => 'cpa', 'Cpa.g.sc29.87' => 'cpa', 'Cpa.g.sc53.115' => 'cpa', 'Cre03.g207502' => 'cre', 'Cre06.g277000' => 'cre', 'Cre09.g394050' => 'cre', 'CsaV3_3G007680' => 'csa', 'CsaV3_3G009710' => 'csa', 'CsaV3_3G034790' => 'csa', 'CsaV3_5G003750' => 'csa', 'CsaV3_6G036620' => 'csa', 'CSS0002288' => 'camsi', 'CSS0011250' => 'camsi', 'CSS0021619' => 'camsi', 'CSS0046701' => 'camsi', 'DCAR_006420' => 'dca', 'DCAR_006865' => 'dca', 'DCAR_008558' => 'dca', 'DCAR_028754' => 'dca', 'DCAR_028755' => 'dca', 'Dinv31218' => 'din', 'Dinv32371' => 'din', 'Dinv34250' => 'din', 'Dinv37156' => 'din', 'Dinv43704' => 'din', 'Duzib093G1811' => 'dzi', 'Duzib106G1622' => 'dzi', 'Duzib114G0504' => 'dzi', 'Duzib128G0338' => 'dzi', 'Duzib128G1577' => 'dzi', 'Duzib133G0104' => 'dzi', 'Duzib133G1080' => 'dzi', 'Duzib138G0324' => 'dzi', 'Duzib138G0394' => 'dzi', 'Duzib205G0122' => 'dzi', 'Duzib268G1020' => 'dzi', 'Duzib268G1359' => 'dzi', 'ECA232G3929' => 'eca', 'ECA236G2210' => 'eca', 'ECA236G2287' => 'eca', 'ECA240G4568' => 'eca', 'ECA247G0894' => 'eca', 'EL10Ac1g00200' => 'bvu', 'EL10Ac1g00886' => 'bvu', 'EL10As1g23091' => 'bvu', 'EL10As1g23092' => 'bvu', 'Eucgr.A01284' => 'egr', 'Eucgr.A01285' => 'egr', 'Eucgr.D02456' => 'egr', 'Eucgr.E00018' => 'egr', 'Eucgr.E01439' => 'egr', 'Eucgr.G02859' => 'egr', 'FAN01G0168' => 'fan', 'FAN01G0453' => 'fan', 'FAN01G2761' => 'fan', 'FAN02G1239' => 'fan', 'FAN03G0645' => 'fan', 'FAN03G2707' => 'fan', 'FAN03G2978' => 'fan', 'FAN04G0227' => 'fan', 'FAN06G0091' => 'fan', 'FAN06G1418' => 'fan', 'FAN06G1512' => 'fan', 'FAN06G1986' => 'fan', 'FAN06G2905' => 'fan', 'FAN06G4325' => 'fan', 'FAN08G0033' => 'fan', 'FAN09G0642' => 'fan', 'FAN10G1763' => 'fan', 'FAN10G2026' => 'fan', 'FAN10G2513' => 'fan', 'FAN10G3402' => 'fan', 'FAN10G3564' => 'fan', 'FAN10G3987' => 'fan', 'FAN13G1490' => 'fan', 'FAN14G5857' => 'fan', 'FAN18G1188' => 'fan', 'FvH4_5g00750' => 'fve', 'FvH4_6g13410' => 'fve', 'FvH4_7g11740' => 'fve', 'FvH4_7g17410' => 'fve', 'FvH4_7g18860' => 'fve', 'Glyma.01G099100' => 'gma', 'Glyma.01G142300' => 'gma', 'Glyma.03G025500' => 'gma', 'Glyma.03G069700' => 'gma', 'Glyma.03G260000' => 'gma', 'Glyma.09G269800' => 'gma', 'Glyma.10G208700' => 'gma', 'Glyma.18G220400' => 'gma', 'Glyma.20G182000' => 'gma', 'Gohir.A01G221726' => 'ghi', 'Gohir.A07G134600' => 'ghi', 'Gohir.A07G146000' => 'ghi', 'Gohir.A08G173900' => 'ghi', 'Gohir.A09G194900' => 'ghi', 'Gohir.A10G204100' => 'ghi', 'Gohir.A11G080600' => 'ghi', 'Gohir.A11G327500' => 'ghi', 'Gohir.A12G101800' => 'ghi', 'Gohir.D01G211200' => 'ghi', 'Gohir.D07G139200' => 'ghi', 'Gohir.D07G152100' => 'ghi', 'Gohir.D08G192600' => 'ghi', 'Gohir.D09G189200' => 'ghi', 'Gohir.D10G212000' => 'ghi', 'Gohir.D11G085200' => 'ghi', 'Gohir.D11G346400' => 'ghi', 'Gohir.D12G104800' => 'ghi', 'Gorai.001G151300' => 'gra', 'Gorai.001G174100' => 'gra', 'Gorai.002G257000' => 'gra', 'Gorai.004G202600' => 'gra', 'Gorai.007G090900' => 'gra', 'Gorai.007G376700' => 'gra', 'Gorai.008G114100' => 'gra', 'Gorai.011G237900' => 'gra', 'GSVIVG01005450001' => 'vvi', 'GSVIVG01016232001' => 'vvi', 'GSVIVG01026157001' => 'vvi', 'GSVIVG01027419001' => 'vvi', 'GSVIVG01027631001' => 'vvi', 'GSVIVG01034143001' => 'vvi', 'HanXRQChr03g0093921' => 'han', 'HanXRQChr04g0120001' => 'han', 'HanXRQChr04g0122561' => 'han', 'HanXRQChr09g0246851' => 'han', 'HanXRQChr10g0293311' => 'han', 'HanXRQChr13g0425231' => 'han', 'HanXRQChr16g0532571' => 'han', 'Haze_09050' => 'cav', 'Haze_15715' => 'cav', 'Haze_15716' => 'cav', 'Haze_16803' => 'cav', 'Haze_16850' => 'cav', 'Hma1.2p1_0301F.1_g118655' => 'hma', 'Hma1.2p1_0309F.1_g120590' => 'hma', 'Hma1.2p1_0936F.1_g238900' => 'hma', 'Hma1.2p1_3552F.1_g336740' => 'hma', 'HPP92_003520' => 'vpl', 'HPP92_006628' => 'vpl', 'HPP92_006645' => 'vpl', 'HPP92_014669' => 'vpl', 'HPP92_015077' => 'vpl', 'Hund16742' => 'sun', 'Hund17022' => 'sun', 'Lalb_Chr02g0152131' => 'lal', 'Lalb_Chr05g0225371' => 'lal', 'Lalb_Chr07g0189841' => 'lal', 'Lalb_Chr07g0192961' => 'lal', 'Lalb_Chr12g0208221' => 'lal', 'Lalb_Chr13g0291211' => 'lal', 'Lalb_Chr13g0291781' => 'lal', 'Lalb_Chr18g0044651' => 'lal', 'Lalb_Chr21g0313731' => 'lal', 'Lj1g0022533' => 'lja', 'Lj2A18T50' => 'lonja', 'Lj2A92G93' => 'lonja', 'Lj3A965T73' => 'lonja', 'Lj3g0000673' => 'lja', 'Lj3g0002666' => 'lja', 'Lj4g0016985' => 'lja', 'Lj5g0003625' => 'lja', 'Lj7A529G36' => 'lonja', 'Lj9A569T49' => 'lonja', 'Lj9A604T63' => 'lonja', 'Lsat_1_v5_gn_3_132060' => 'lsa', 'Lsat_1_v5_gn_4_68941' => 'lsa', 'Lsat_1_v5_gn_5_95580' => 'lsa', 'Lsat_1_v5_gn_7_161' => 'lsa', 'Lsat_1_v5_gn_7_7041' => 'lsa', 'Lsat_1_v5_gn_9_33481' => 'lsa', 'Lsat_1_v5_gn_9_68260' => 'lsa', 'Manes.01G073100' => 'mes', 'Manes.01G266300' => 'mes', 'Manes.02G033300' => 'mes', 'Manes.05G017900' => 'mes', 'Manes.05G046100' => 'mes', 'Manes.08G080900' => 'mes', 'Manes.10G049400' => 'mes', 'Mapoly0009s0186' => 'mpo', 'Mapoly0036s0118' => 'mpo', 'Mapoly0101s0046' => 'mpo', 'MBI04_g30218_MAGBIO' => 'mbi', 'MBI04_g35564_MAGBIO' => 'mbi', 'MBI12_g34011_MAGBIO' => 'mbi', 'MBI14_g04655_MAGBIO' => 'mbi', 'MCO07G653' => 'mco', 'MCO10G173' => 'mco', 'MD01G1087100' => 'mdo', 'MD01G1104200' => 'mdo', 'MD02G1205100' => 'mdo', 'MD04G1079200' => 'mdo', 'MD04G1131400' => 'mdo', 'MD07G1121600' => 'mdo', 'MD07G1157300' => 'mdo', 'MD07G1171000' => 'mdo', 'MD12G1144500' => 'mdo', 'Medtr1g094610' => 'mtr', 'Medtr4g021795' => 'mtr', 'Medtr4g023760' => 'mtr', 'Medtr7g118050' => 'mtr', 'MELO3C005582.2' => 'cme', 'MELO3C005989.2' => 'cme', 'MELO3C006192.2' => 'cme', 'MELO3C009248.2' => 'cme', 'MELO3C019817.2' => 'cme', 'Migut.B01625' => 'egut', 'Migut.B01915' => 'egut', 'Migut.F01721' => 'egut', 'Migut.J00314' => 'egut', 'MSTRG.20742' => 'ama', 'MSTRG.8134' => 'ama', 'Nitab4.5_0000096g0010' => 'nta', 'Nitab4.5_0000202g0030' => 'nta', 'Nitab4.5_0000216g0370' => 'nta', 'Nitab4.5_0000457g0230' => 'nta', 'Nitab4.5_0001702g0170' => 'nta', 'Nitab4.5_0003607g0010' => 'nta', 'Nitab4.5_0004917g0020' => 'nta', 'Nitab4.5_0007059g0010' => 'nta', 'Nitab4.5_0007184g0010' => 'nta', 'Nitab4.5_0007346g0020' => 'nta', 'Nn1g00410' => 'nnu', 'Nn1g01252' => 'nnu', 'Nn2g11168' => 'nnu', 'Nn2g13403' => 'nnu', 'Nn2g13760' => 'nnu', 'Nn4g26380' => 'nnu', 'Oeu000806.2' => 'oeu', 'Oeu005788.1' => 'oeu', 'Oeu006900.3' => 'oeu', 'Oeu007797.1' => 'oeu', 'Oeu011932.1' => 'oeu', 'Oeu022739.1' => 'oeu', 'Oeu037918.1' => 'oeu', 'Oeu055490.2' => 'oeu', 'Os01g0844400' => 'osa', 'Os02g0819100' => 'osa', 'Os03g0804300' => 'osa', 'Os05g0458000' => 'osa', 'Os07g0467800' => 'osa', 'Os12g0602200' => 'osa', 'Peaxi162Scf00013g03444' => 'pax', 'Peaxi162Scf00094g01120' => 'pax', 'Peaxi162Scf00191g01211' => 'pax', 'Peaxi162Scf00238g01110' => 'pax', 'Peaxi162Scf00330g00719' => 'pax', 'Peaxi162Scf00627g00018' => 'pax', 'PGR031G2686' => 'pgr', 'PGR042G0809' => 'pgr', 'PGR142G0193' => 'pgr', 'PGSC0003DMG400011066' => 'stu', 'PGSC0003DMG400012041' => 'stu', 'PGSC0003DMG400013678' => 'stu', 'PGSC0003DMG400023477' => 'stu', 'PGSC0003DMG400025956' => 'stu', 'PGSC0003DMG401019151' => 'stu', 'Phvul.006G116400' => 'pvu', 'Phvul.007G097300' => 'pvu', 'Phvul.010G015000' => 'pvu', 'Phvul.010G083900' => 'pvu', 'Potri.001G117100' => 'ptr', 'Potri.002G147300' => 'ptr', 'Potri.003G115600' => 'ptr', 'Potri.006G087400' => 'ptr', 'Potri.010G226100' => 'ptr', 'Potri.014G069200' => 'ptr', 'Potri.014G104000' => 'ptr', 'Potri.016G100200' => 'ptr', 'Pp3c10_20450' => 'ppa', 'Pp3c1_42400' => 'ppa', 'Pp3c3_24390' => 'ppa', 'Pp3c3_2860' => 'ppa', 'PRCOL_00003193' => 'pco', 'Prupe.2G144500' => 'ppe', 'Prupe.2G195700' => 'ppe', 'Prupe.2G209800' => 'ppe', 'Prupe.5G080000' => 'ppe', 'Prupe.6G257900' => 'ppe', 'Psat3g001160' => 'psa', 'Psat6g181880' => 'psa', 'Psat7g233720' => 'psa', 'PSO063G7587' => 'pso', 'PSO339G2145' => 'pso', 'PSO339G3369' => 'pso', 'PSO478G2747' => 'pso', 'PSO513G0140' => 'pso', 'PSO782G1614' => 'pso', 'PSO782G4889' => 'pso', 'PSO782G5485' => 'pso', 'PSO801G0241' => 'pso', 'QL07p048854' => 'qlo', 'QL08p046745' => 'qlo', 'QL08p052606' => 'qlo', 'QL08p053414' => 'qlo', 'QL08p054868' => 'qlo', 'RcHm_v2.0_Chr1g0350251' => 'rch', 'RcHm_v2.0_Chr1g0360851' => 'rch', 'RcHm_v2.0_Chr1g0362791' => 'rch', 'RcHm_v2.0_Chr3g0466281' => 'rch', 'RcHm_v2.0_Chr7g0201481' => 'rch', 'Rhsim01G0148600' => 'rsi', 'Rhsim05G0194400' => 'rsi', 'Rhsim07G0000700' => 'rsi', 'Rhsim07G0000800' => 'rsi', 'Rhsim07G0027900' => 'rsi', 'Rhsim09G0149500' => 'rsi', 'RhsimUnG0186900' => 'rsi', 'Sabra01G0089900' => 'sbr', 'Sabra02G0114700' => 'sbr', 'Sabra02G0116300' => 'sbr', 'Sabra03G0080100' => 'sbr', 'Sabra08G0024300' => 'sbr', 'Sabra10G0174300' => 'sbr', 'Sabra14G0048900' => 'sbr', 'Sabra14G0076500' => 'sbr', 'SalBow5G2513' => 'sbo', 'Sc01g0002300' => 'sci', 'Sc01g0004450' => 'sci', 'Sc06g0001680' => 'sci', 'Sc23g0003580' => 'sci', 'Sed0000913' => 'sed', 'Sed0001655' => 'sed', 'Sed0007745' => 'sed', 'Sed0010951' => 'sed', 'Sed0017599' => 'sed', 'Sed0021405' => 'sed', 'Sed0022810' => 'sed', 'SEGI_07099' => 'sgi', 'SEGI_11931' => 'sgi', 'SEGI_13187' => 'sgi', 'SEGI_29958' => 'sgi', 'SEGI_36351' => 'sgi', 'SGA_v2.0_scaffold126G33770' => 'sas', 'SGA_v2.0_scaffold153G37003' => 'sas', 'SGA_v2.0_scaffold2G01359' => 'sas', 'SGA_v2.0_scaffold5G03064' => 'sas', 'SGA_v2.0_scaffold95G28903' => 'sas', 'SHI12701' => 'shi', 'SHI26410' => 'shi', 'SHI38997' => 'shi', 'SHI53759' => 'shi', 'SHI53886' => 'shi', 'SHI54714' => 'shi', 'SMO011G0041' => 'smo', 'SMO146G0251' => 'smo', 'SMO160G0004' => 'smo', 'SMO174G0057' => 'smo', 'SMO244G0089' => 'smo', 'SMO296G0011' => 'smo', 'Solyc01g091280.3' => 'sly', 'Solyc05g047610.3' => 'sly', 'Solyc05g047640.3' => 'sly', 'Solyc05g055630.3' => 'sly', 'Solyc10g018160.2' => 'sly', 'Solyc10g084820.2' => 'sly', 'Solyc10g086565.2' => 'sly', 'Sopen01g037030' => 'spe', 'Sopen05g027920' => 'spe', 'Sopen05g034070' => 'spe', 'Sopen10g007260' => 'spe', 'Sopen10g034260' => 'spe', 'Sopen10g035950' => 'spe', 'Sp3g07710' => 'spa', 'Sp4g27420' => 'spa', 'Sp5g02450' => 'spa', 'Sp6g01280' => 'spa', 'Sp6g38480' => 'spa', 'Sp7g20780' => 'spa', 'TAR374G1413' => 'tar', 'TAR623G1777' => 'tar', 'TAR629G2370' => 'tar', 'TAR633G1759' => 'tar', 'TAR636G3387' => 'tar', 'THA.LOC104802447' => 'tha', 'THA.LOC104813916' => 'tha', 'THA.LOC104816423' => 'tha', 'THA.LOC104817246' => 'tha', 'THA.LOC104825895' => 'tha', 'Thecc.01G335200' => 'tca', 'Thecc.01G377400' => 'tca', 'Thecc.03G262200' => 'tca', 'Thecc.05G036800' => 'tca', 'Thecc.10G080500' => 'tca', 'Thecc.10G080800' => 'tca', 'Thhalv10001560m.g' => 'esa', 'Thhalv10006120m.g' => 'esa', 'Thhalv10014375m.g' => 'esa', 'Thhalv10021264m.g' => 'esa', 'Thhalv10028856m.g' => 'esa', 'TPR.G1914' => 'tpr', 'TPR.G4757' => 'tpr', 'TPR.G5595' => 'tpr', 'TWI14G0952' => 'twi', 'TWI14G1307' => 'twi', 'TWI38G2143' => 'twi', 'TWI59G0826' => 'twi', 'TWI77G0527' => 'twi', 'TWI81G0150' => 'twi', 'unitig_21.g21018' => 'ugi', 'unitig_26.g9725' => 'ugi', 'unitig_744.g24653' => 'ugi', 'unitig_749.g13778' => 'ugi', 'unitig_899.g15035' => 'ugi', 'vmacro04296' => 'vma', 'vmacro04852' => 'vma', 'vmacro13404' => 'vma', 'vmacro20169' => 'vma', 'vmacro21014' => 'vma', 'VMungo0331G0237' => 'vmu', 'VMungo0331G0706' => 'vmu', 'VMungo0331G1361' => 'vmu', 'VMungo0331G1489' => 'vmu', 'VMungo0540G1037' => 'vmu', 'VMungo0720G2487' => 'vmu', 'VMungo0720G2721' => 'vmu', 'Zm00001eb086860' => 'zma', 'Zm00001eb104760' => 'zma', 'Zm00001eb148220' => 'zma', 'Zm00001eb259030' => 'zma', 'Zm00001eb289590' => 'zma', 'Zm00001eb420150' => 'zma' ), 'gf_id' => 'HOM05D000968', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000968' ), 'data_identifier' => 'HOM05D000968', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000968', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p31690' => 'bna', 'A03p36040' => 'bna', 'A03p53730' => 'bna', 'A04p01410' => 'bna', 'A05p05420' => 'bna', 'A05p39630' => 'bna', 'A05p39640' => 'bna', 'A09p00970' => 'bna', 'A09p53060' => 'bna', 'A10p31890' => 'bna', 'Aa31LG10G15040' => 'aar', 'Aa31LG1G21090' => 'aar', 'Aa31LG1G26900' => 'aar', 'Aa31LG3G1820' => 'aar', 'Aa31LG5G1100' => 'aar', 'Aa31LG6G4740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2265' => 'aag', 'Actinidia07998' => 'ach', 'Actinidia11266' => 'ach', 'Actinidia12682' => 'ach', 'Actinidia26479' => 'ach', 'Actinidia31406' => 'ach', 'Actinidia32437' => 'ach', 'Actinidia38862' => 'ach', 'Ah.05g174230' => 'amhyb', 'Ah.05g179070' => 'amhyb', 'Ah.05g179090' => 'amhyb', 'Ah.12g059950' => 'amhyb', 'AL3G20480' => 'aly', 'AL4G44520' => 'aly', 'AL5G43110' => 'aly', 'AL6G13890' => 'aly', 'AL6G52620' => 'aly', 'AL7G30830' => 'aly', 'Aqoxy1G00899' => 'aox', 'Aqoxy5G04333' => 'aox', 'Aqoxy7G00641' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3IZ0NN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4EF6AW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W9P8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79GA3M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C43NQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFCU6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G95YVJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCHK29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LU1UG8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX91RN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGB4B1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8DA0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9H7JI' => 'arhy', 'AT3G09320' => 'ath', 'AT3G60800' => 'ath', 'AT4G00840' => 'ath', 'AT4G22750' => 'ath', 'AT5G04270' => 'ath', 'ATR0090G003' => 'atr', 'ATR0559G349' => 'atr', 'ATR0680G261' => 'atr', 'ATR0810G048' => 'atr', 'Atru.chr12.831' => 'acertr', 'Atru.chr5.303' => 'acertr', 'Atru.chr5.748' => 'acertr', 'Atru.chr8.1999' => 'acertr', 'Atru.chr9.1436' => 'acertr', 'AUR62004211' => 'cqu', 'AUR62004548' => 'cqu', 'AUR62013637' => 'cqu', 'AUR62022662' => 'cqu', 'AUR62025777' => 'cqu', 'AUR62042386' => 'cqu', 'BcaB01g02310' => 'bca', 'BcaB01g06062' => 'bca', 'BcaB02g08975' => 'bca', 'BcaB02g08980' => 'bca', 'BcaC01g04228' => 'bca', 'BcaC01g06830' => 'bca', 'BcaC02g10186' => 'bca', 'BcaC02g12214' => 'bca', 'BcaC04g24101' => 'bca', 'BcaC05g29520' => 'bca', 'BcaC05g29661' => 'bca', 'BcaC06g32130' => 'bca', 'BcaC06g32131' => 'bca', 'BcaC07g40601' => 'bca', 'BcaC07g42641' => 'bca', 'BcaNung01038' => 'bca', 'BcaNung01676' => 'bca', 'BcaNung02480' => 'bca', 'BcaNung07376' => 'bca', 'BolC3t16146H' => 'bol', 'BolC3t16637H' => 'bol', 'BolC4t22257H' => 'bol', 'BolC4t24728H' => 'bol', 'BolC5t34517H' => 'bol', 'BolC7t45703H' => 'bol', 'BolC8t51166H' => 'bol', 'BolC9t53038H' => 'bol', 'BolC9t60000H' => 'bol', 'BraA01t01345Z' => 'bra', 'BraA01t01346Z' => 'bra', 'BraA01t01348Z' => 'bra', 'BraA03t12347Z' => 'bra', 'BraA03t12775Z' => 'bra', 'BraA03t14439Z' => 'bra', 'BraA04t15860Z' => 'bra', 'BraA05t19511Z' => 'bra', 'BraA05t22746Z' => 'bra', 'BraA09t35767Z' => 'bra', 'BraA09t40732Z' => 'bra', 'BraA10t45233Z' => 'bra', 'C03p38720' => 'bna', 'C03p43680' => 'bna', 'C04p06350' => 'bna', 'C04p31800' => 'bna', 'C05p58680' => 'bna', 'C07p52110' => 'bna', 'C08p35760' => 'bna', 'C09p01050' => 'bna', 'C09p72600' => 'bna', 'CAN.G106.2' => 'can', 'CAN.G1482.1' => 'can', 'CAN.G324.12' => 'can', 'CAN.G388.20' => 'can', 'CAN.G412.7' => 'can', 'CAN.G694.32' => 'can', 'CAN.G92.12' => 'can', 'CANSAT11G2353' => 'cansat', 'CANSAT21G1398' => 'cansat', 'CANSAT56G2456' => 'cansat', 'CANSAT56G3031' => 'cansat', 'CANSAT56G4539' => 'cansat', 'CARHR083680' => 'chi', 'CARHR171190' => 'chi', 'CARHR209010' => 'chi', 'CARHR229680' => 'chi', 'CARHR249490' => 'chi', 'Carub.0003s0844' => 'cru', 'Carub.0005s2755' => 'cru', 'Carub.0006s0322' => 'cru', 'Carub.0006s3586' => 'cru', 'Carub.0007s1855' => 'cru', 'Ca_07808_v3' => 'car', 'Ca_09535_v3' => 'car', 'Ca_10548_v3' => 'car', 'Ca_19913_v3' => 'car', 'Ca_19916_v3' => 'car', 'Ca_19975_v3' => 'car', 'CBR_g22876' => 'cbr', 'CBR_g22879' => 'cbr', 'CBR_g38491' => 'cbr', 'CBR_g54185' => 'cbr', 'CBR_g54190' => 'cbr', 'Cc02_g11020' => 'ccan', 'Cc02_g23920' => 'ccan', 'Cc02_g39860' => 'ccan', 'Cc02_g39870' => 'ccan', 'Cc03_g06760' => 'ccan', 'Cc06_g02450' => 'ccan', 'Cc09_g09450' => 'ccan', 'CDE02G1959' => 'cde', 'CDE04G0600' => 'cde', 'CDE07G1996' => 'cde', 'CDE07G2078' => 'cde', 'CDE11G0611' => 'cde', 'Cfa001683' => 'cfa', 'Cfa001734' => 'cfa', 'Cfa001737' => 'cfa', 'Cfa003751' => 'cfa', 'Cfa012019' => 'cfa', 'Cfa017353' => 'cfa', 'Cfa017732' => 'cfa', 'Cfa022464' => 'cfa', 'Ciclev10012400m.g' => 'ccl', 'Ciclev10021242m.g' => 'ccl', 'Ciclev10021302m.g' => 'ccl', 'Ciclev10021463m.g' => 'ccl', 'Ciclev10032359m.g' => 'ccl', 'CiPaw.01G081000' => 'cil', 'CiPaw.01G262500' => 'cil', 'CiPaw.01G269800' => 'cil', 'CiPaw.02G168400' => 'cil', 'CiPaw.05G119500' => 'cil', 'CiPaw.11G147300' => 'cil', 'ClCG01G003630' => 'cla', 'ClCG05G000510' => 'cla', 'ClCG05G002300' => 'cla', 'ClCG08G007650' => 'cla', 'ClCG10G021250' => 'cla', 'COL.COLO4_06218' => 'col', 'COL.COLO4_12538' => 'col', 'COL.COLO4_14775' => 'col', 'COL.COLO4_23875' => 'col', 'Cpa.g.sc141.16' => 'cpa', 'Cpa.g.sc169.16' => 'cpa', 'Cpa.g.sc244.4' => 'cpa', 'Cpa.g.sc244.5' => 'cpa', 'Cpa.g.sc29.87' => 'cpa', 'Cpa.g.sc53.115' => 'cpa', 'Cre03.g207502' => 'cre', 'Cre06.g277000' => 'cre', 'Cre09.g394050' => 'cre', 'CsaV3_3G007680' => 'csa', 'CsaV3_3G009710' => 'csa', 'CsaV3_3G034790' => 'csa', 'CsaV3_5G003750' => 'csa', 'CsaV3_6G036620' => 'csa', 'CSS0002288' => 'camsi', 'CSS0011250' => 'camsi', 'CSS0021619' => 'camsi', 'CSS0046701' => 'camsi', 'DCAR_006420' => 'dca', 'DCAR_006865' => 'dca', 'DCAR_008558' => 'dca', 'DCAR_028754' => 'dca', 'DCAR_028755' => 'dca', 'Dinv31218' => 'din', 'Dinv32371' => 'din', 'Dinv34250' => 'din', 'Dinv37156' => 'din', 'Dinv43704' => 'din', 'Duzib093G1811' => 'dzi', 'Duzib106G1622' => 'dzi', 'Duzib114G0504' => 'dzi', 'Duzib128G0338' => 'dzi', 'Duzib128G1577' => 'dzi', 'Duzib133G0104' => 'dzi', 'Duzib133G1080' => 'dzi', 'Duzib138G0324' => 'dzi', 'Duzib138G0394' => 'dzi', 'Duzib205G0122' => 'dzi', 'Duzib268G1020' => 'dzi', 'Duzib268G1359' => 'dzi', 'ECA232G3929' => 'eca', 'ECA236G2210' => 'eca', 'ECA236G2287' => 'eca', 'ECA240G4568' => 'eca', 'ECA247G0894' => 'eca', 'EL10Ac1g00200' => 'bvu', 'EL10Ac1g00886' => 'bvu', 'EL10As1g23091' => 'bvu', 'EL10As1g23092' => 'bvu', 'Eucgr.A01284' => 'egr', 'Eucgr.A01285' => 'egr', 'Eucgr.D02456' => 'egr', 'Eucgr.E00018' => 'egr', 'Eucgr.E01439' => 'egr', 'Eucgr.G02859' => 'egr', 'FAN01G0168' => 'fan', 'FAN01G0453' => 'fan', 'FAN01G2761' => 'fan', 'FAN02G1239' => 'fan', 'FAN03G0645' => 'fan', 'FAN03G2707' => 'fan', 'FAN03G2978' => 'fan', 'FAN04G0227' => 'fan', 'FAN06G0091' => 'fan', 'FAN06G1418' => 'fan', 'FAN06G1512' => 'fan', 'FAN06G1986' => 'fan', 'FAN06G2905' => 'fan', 'FAN06G4325' => 'fan', 'FAN08G0033' => 'fan', 'FAN09G0642' => 'fan', 'FAN10G1763' => 'fan', 'FAN10G2026' => 'fan', 'FAN10G2513' => 'fan', 'FAN10G3402' => 'fan', 'FAN10G3564' => 'fan', 'FAN10G3987' => 'fan', 'FAN13G1490' => 'fan', 'FAN14G5857' => 'fan', 'FAN18G1188' => 'fan', 'FvH4_5g00750' => 'fve', 'FvH4_6g13410' => 'fve', 'FvH4_7g11740' => 'fve', 'FvH4_7g17410' => 'fve', 'FvH4_7g18860' => 'fve', 'Glyma.01G099100' => 'gma', 'Glyma.01G142300' => 'gma', 'Glyma.03G025500' => 'gma', 'Glyma.03G069700' => 'gma', 'Glyma.03G260000' => 'gma', 'Glyma.09G269800' => 'gma', 'Glyma.10G208700' => 'gma', 'Glyma.18G220400' => 'gma', 'Glyma.20G182000' => 'gma', 'Gohir.A01G221726' => 'ghi', 'Gohir.A07G134600' => 'ghi', 'Gohir.A07G146000' => 'ghi', 'Gohir.A08G173900' => 'ghi', 'Gohir.A09G194900' => 'ghi', 'Gohir.A10G204100' => 'ghi', 'Gohir.A11G080600' => 'ghi', 'Gohir.A11G327500' => 'ghi', 'Gohir.A12G101800' => 'ghi', 'Gohir.D01G211200' => 'ghi', 'Gohir.D07G139200' => 'ghi', 'Gohir.D07G152100' => 'ghi', 'Gohir.D08G192600' => 'ghi', 'Gohir.D09G189200' => 'ghi', 'Gohir.D10G212000' => 'ghi', 'Gohir.D11G085200' => 'ghi', 'Gohir.D11G346400' => 'ghi', 'Gohir.D12G104800' => 'ghi', 'Gorai.001G151300' => 'gra', 'Gorai.001G174100' => 'gra', 'Gorai.002G257000' => 'gra', 'Gorai.004G202600' => 'gra', 'Gorai.007G090900' => 'gra', 'Gorai.007G376700' => 'gra', 'Gorai.008G114100' => 'gra', 'Gorai.011G237900' => 'gra', 'GSVIVG01005450001' => 'vvi', 'GSVIVG01016232001' => 'vvi', 'GSVIVG01026157001' => 'vvi', 'GSVIVG01027419001' => 'vvi', 'GSVIVG01027631001' => 'vvi', 'GSVIVG01034143001' => 'vvi', 'HanXRQChr03g0093921' => 'han', 'HanXRQChr04g0120001' => 'han', 'HanXRQChr04g0122561' => 'han', 'HanXRQChr09g0246851' => 'han', 'HanXRQChr10g0293311' => 'han', 'HanXRQChr13g0425231' => 'han', 'HanXRQChr16g0532571' => 'han', 'Haze_09050' => 'cav', 'Haze_15715' => 'cav', 'Haze_15716' => 'cav', 'Haze_16803' => 'cav', 'Haze_16850' => 'cav', 'Hma1.2p1_0301F.1_g118655' => 'hma', 'Hma1.2p1_0309F.1_g120590' => 'hma', 'Hma1.2p1_0936F.1_g238900' => 'hma', 'Hma1.2p1_3552F.1_g336740' => 'hma', 'HPP92_003520' => 'vpl', 'HPP92_006628' => 'vpl', 'HPP92_006645' => 'vpl', 'HPP92_014669' => 'vpl', 'HPP92_015077' => 'vpl', 'Hund16742' => 'sun', 'Hund17022' => 'sun', 'Lalb_Chr02g0152131' => 'lal', 'Lalb_Chr05g0225371' => 'lal', 'Lalb_Chr07g0189841' => 'lal', 'Lalb_Chr07g0192961' => 'lal', 'Lalb_Chr12g0208221' => 'lal', 'Lalb_Chr13g0291211' => 'lal', 'Lalb_Chr13g0291781' => 'lal', 'Lalb_Chr18g0044651' => 'lal', 'Lalb_Chr21g0313731' => 'lal', 'Lj1g0022533' => 'lja', 'Lj2A18T50' => 'lonja', 'Lj2A92G93' => 'lonja', 'Lj3A965T73' => 'lonja', 'Lj3g0000673' => 'lja', 'Lj3g0002666' => 'lja', 'Lj4g0016985' => 'lja', 'Lj5g0003625' => 'lja', 'Lj7A529G36' => 'lonja', 'Lj9A569T49' => 'lonja', 'Lj9A604T63' => 'lonja', 'Lsat_1_v5_gn_3_132060' => 'lsa', 'Lsat_1_v5_gn_4_68941' => 'lsa', 'Lsat_1_v5_gn_5_95580' => 'lsa', 'Lsat_1_v5_gn_7_161' => 'lsa', 'Lsat_1_v5_gn_7_7041' => 'lsa', 'Lsat_1_v5_gn_9_33481' => 'lsa', 'Lsat_1_v5_gn_9_68260' => 'lsa', 'Manes.01G073100' => 'mes', 'Manes.01G266300' => 'mes', 'Manes.02G033300' => 'mes', 'Manes.05G017900' => 'mes', 'Manes.05G046100' => 'mes', 'Manes.08G080900' => 'mes', 'Manes.10G049400' => 'mes', 'Mapoly0009s0186' => 'mpo', 'Mapoly0036s0118' => 'mpo', 'Mapoly0101s0046' => 'mpo', 'MBI04_g30218_MAGBIO' => 'mbi', 'MBI04_g35564_MAGBIO' => 'mbi', 'MBI12_g34011_MAGBIO' => 'mbi', 'MBI14_g04655_MAGBIO' => 'mbi', 'MCO07G653' => 'mco', 'MCO10G173' => 'mco', 'MD01G1087100' => 'mdo', 'MD01G1104200' => 'mdo', 'MD02G1205100' => 'mdo', 'MD04G1079200' => 'mdo', 'MD04G1131400' => 'mdo', 'MD07G1121600' => 'mdo', 'MD07G1157300' => 'mdo', 'MD07G1171000' => 'mdo', 'MD12G1144500' => 'mdo', 'Medtr1g094610' => 'mtr', 'Medtr4g021795' => 'mtr', 'Medtr4g023760' => 'mtr', 'Medtr7g118050' => 'mtr', 'MELO3C005582.2' => 'cme', 'MELO3C005989.2' => 'cme', 'MELO3C006192.2' => 'cme', 'MELO3C009248.2' => 'cme', 'MELO3C019817.2' => 'cme', 'Migut.B01625' => 'egut', 'Migut.B01915' => 'egut', 'Migut.F01721' => 'egut', 'Migut.J00314' => 'egut', 'MSTRG.20742' => 'ama', 'MSTRG.8134' => 'ama', 'Nitab4.5_0000096g0010' => 'nta', 'Nitab4.5_0000202g0030' => 'nta', 'Nitab4.5_0000216g0370' => 'nta', 'Nitab4.5_0000457g0230' => 'nta', 'Nitab4.5_0001702g0170' => 'nta', 'Nitab4.5_0003607g0010' => 'nta', 'Nitab4.5_0004917g0020' => 'nta', 'Nitab4.5_0007059g0010' => 'nta', 'Nitab4.5_0007184g0010' => 'nta', 'Nitab4.5_0007346g0020' => 'nta', 'Nn1g00410' => 'nnu', 'Nn1g01252' => 'nnu', 'Nn2g11168' => 'nnu', 'Nn2g13403' => 'nnu', 'Nn2g13760' => 'nnu', 'Nn4g26380' => 'nnu', 'Oeu000806.2' => 'oeu', 'Oeu005788.1' => 'oeu', 'Oeu006900.3' => 'oeu', 'Oeu007797.1' => 'oeu', 'Oeu011932.1' => 'oeu', 'Oeu022739.1' => 'oeu', 'Oeu037918.1' => 'oeu', 'Oeu055490.2' => 'oeu', 'Os01g0844400' => 'osa', 'Os02g0819100' => 'osa', 'Os03g0804300' => 'osa', 'Os05g0458000' => 'osa', 'Os07g0467800' => 'osa', 'Os12g0602200' => 'osa', 'Peaxi162Scf00013g03444' => 'pax', 'Peaxi162Scf00094g01120' => 'pax', 'Peaxi162Scf00191g01211' => 'pax', 'Peaxi162Scf00238g01110' => 'pax', 'Peaxi162Scf00330g00719' => 'pax', 'Peaxi162Scf00627g00018' => 'pax', 'PGR031G2686' => 'pgr', 'PGR042G0809' => 'pgr', 'PGR142G0193' => 'pgr', 'PGSC0003DMG400011066' => 'stu', 'PGSC0003DMG400012041' => 'stu', 'PGSC0003DMG400013678' => 'stu', 'PGSC0003DMG400023477' => 'stu', 'PGSC0003DMG400025956' => 'stu', 'PGSC0003DMG401019151' => 'stu', 'Phvul.006G116400' => 'pvu', 'Phvul.007G097300' => 'pvu', 'Phvul.010G015000' => 'pvu', 'Phvul.010G083900' => 'pvu', 'Potri.001G117100' => 'ptr', 'Potri.002G147300' => 'ptr', 'Potri.003G115600' => 'ptr', 'Potri.006G087400' => 'ptr', 'Potri.010G226100' => 'ptr', 'Potri.014G069200' => 'ptr', 'Potri.014G104000' => 'ptr', 'Potri.016G100200' => 'ptr', 'Pp3c10_20450' => 'ppa', 'Pp3c1_42400' => 'ppa', 'Pp3c3_24390' => 'ppa', 'Pp3c3_2860' => 'ppa', 'PRCOL_00003193' => 'pco', 'Prupe.2G144500' => 'ppe', 'Prupe.2G195700' => 'ppe', 'Prupe.2G209800' => 'ppe', 'Prupe.5G080000' => 'ppe', 'Prupe.6G257900' => 'ppe', 'Psat3g001160' => 'psa', 'Psat6g181880' => 'psa', 'Psat7g233720' => 'psa', 'PSO063G7587' => 'pso', 'PSO339G2145' => 'pso', 'PSO339G3369' => 'pso', 'PSO478G2747' => 'pso', 'PSO513G0140' => 'pso', 'PSO782G1614' => 'pso', 'PSO782G4889' => 'pso', 'PSO782G5485' => 'pso', 'PSO801G0241' => 'pso', 'QL07p048854' => 'qlo', 'QL08p046745' => 'qlo', 'QL08p052606' => 'qlo', 'QL08p053414' => 'qlo', 'QL08p054868' => 'qlo', 'RcHm_v2.0_Chr1g0350251' => 'rch', 'RcHm_v2.0_Chr1g0360851' => 'rch', 'RcHm_v2.0_Chr1g0362791' => 'rch', 'RcHm_v2.0_Chr3g0466281' => 'rch', 'RcHm_v2.0_Chr7g0201481' => 'rch', 'Rhsim01G0148600' => 'rsi', 'Rhsim05G0194400' => 'rsi', 'Rhsim07G0000700' => 'rsi', 'Rhsim07G0000800' => 'rsi', 'Rhsim07G0027900' => 'rsi', 'Rhsim09G0149500' => 'rsi', 'RhsimUnG0186900' => 'rsi', 'Sabra01G0089900' => 'sbr', 'Sabra02G0114700' => 'sbr', 'Sabra02G0116300' => 'sbr', 'Sabra03G0080100' => 'sbr', 'Sabra08G0024300' => 'sbr', 'Sabra10G0174300' => 'sbr', 'Sabra14G0048900' => 'sbr', 'Sabra14G0076500' => 'sbr', 'SalBow5G2513' => 'sbo', 'Sc01g0002300' => 'sci', 'Sc01g0004450' => 'sci', 'Sc06g0001680' => 'sci', 'Sc23g0003580' => 'sci', 'Sed0000913' => 'sed', 'Sed0001655' => 'sed', 'Sed0007745' => 'sed', 'Sed0010951' => 'sed', 'Sed0017599' => 'sed', 'Sed0021405' => 'sed', 'Sed0022810' => 'sed', 'SEGI_07099' => 'sgi', 'SEGI_11931' => 'sgi', 'SEGI_13187' => 'sgi', 'SEGI_29958' => 'sgi', 'SEGI_36351' => 'sgi', 'SGA_v2.0_scaffold126G33770' => 'sas', 'SGA_v2.0_scaffold153G37003' => 'sas', 'SGA_v2.0_scaffold2G01359' => 'sas', 'SGA_v2.0_scaffold5G03064' => 'sas', 'SGA_v2.0_scaffold95G28903' => 'sas', 'SHI12701' => 'shi', 'SHI26410' => 'shi', 'SHI38997' => 'shi', 'SHI53759' => 'shi', 'SHI53886' => 'shi', 'SHI54714' => 'shi', 'SMO011G0041' => 'smo', 'SMO146G0251' => 'smo', 'SMO160G0004' => 'smo', 'SMO174G0057' => 'smo', 'SMO244G0089' => 'smo', 'SMO296G0011' => 'smo', 'Solyc01g091280.3' => 'sly', 'Solyc05g047610.3' => 'sly', 'Solyc05g047640.3' => 'sly', 'Solyc05g055630.3' => 'sly', 'Solyc10g018160.2' => 'sly', 'Solyc10g084820.2' => 'sly', 'Solyc10g086565.2' => 'sly', 'Sopen01g037030' => 'spe', 'Sopen05g027920' => 'spe', 'Sopen05g034070' => 'spe', 'Sopen10g007260' => 'spe', 'Sopen10g034260' => 'spe', 'Sopen10g035950' => 'spe', 'Sp3g07710' => 'spa', 'Sp4g27420' => 'spa', 'Sp5g02450' => 'spa', 'Sp6g01280' => 'spa', 'Sp6g38480' => 'spa', 'Sp7g20780' => 'spa', 'TAR374G1413' => 'tar', 'TAR623G1777' => 'tar', 'TAR629G2370' => 'tar', 'TAR633G1759' => 'tar', 'TAR636G3387' => 'tar', 'THA.LOC104802447' => 'tha', 'THA.LOC104813916' => 'tha', 'THA.LOC104816423' => 'tha', 'THA.LOC104817246' => 'tha', 'THA.LOC104825895' => 'tha', 'Thecc.01G335200' => 'tca', 'Thecc.01G377400' => 'tca', 'Thecc.03G262200' => 'tca', 'Thecc.05G036800' => 'tca', 'Thecc.10G080500' => 'tca', 'Thecc.10G080800' => 'tca', 'Thhalv10001560m.g' => 'esa', 'Thhalv10006120m.g' => 'esa', 'Thhalv10014375m.g' => 'esa', 'Thhalv10021264m.g' => 'esa', 'Thhalv10028856m.g' => 'esa', 'TPR.G1914' => 'tpr', 'TPR.G4757' => 'tpr', 'TPR.G5595' => 'tpr', 'TWI14G0952' => 'twi', 'TWI14G1307' => 'twi', 'TWI38G2143' => 'twi', 'TWI59G0826' => 'twi', 'TWI77G0527' => 'twi', 'TWI81G0150' => 'twi', 'unitig_21.g21018' => 'ugi', 'unitig_26.g9725' => 'ugi', 'unitig_744.g24653' => 'ugi', 'unitig_749.g13778' => 'ugi', 'unitig_899.g15035' => 'ugi', 'vmacro04296' => 'vma', 'vmacro04852' => 'vma', 'vmacro13404' => 'vma', 'vmacro20169' => 'vma', 'vmacro21014' => 'vma', 'VMungo0331G0237' => 'vmu', 'VMungo0331G0706' => 'vmu', 'VMungo0331G1361' => 'vmu', 'VMungo0331G1489' => 'vmu', 'VMungo0540G1037' => 'vmu', 'VMungo0720G2487' => 'vmu', 'VMungo0720G2721' => 'vmu', 'Zm00001eb086860' => 'zma', 'Zm00001eb104760' => 'zma', 'Zm00001eb148220' => 'zma', 'Zm00001eb259030' => 'zma', 'Zm00001eb289590' => 'zma', 'Zm00001eb420150' => 'zma' ) $gf_id = 'HOM05D000968' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000968' ) $data_identifier = 'HOM05D000968' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 19, 'bol' => (int) 9, 'bra' => (int) 12, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 5, 'ccan' => (int) 7, 'cde' => (int) 5, 'cfa' => (int) 8, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 4, 'dca' => (int) 5, 'din' => (int) 5, 'dzi' => (int) 12, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 25, 'fve' => (int) 5, 'gma' => (int) 9, 'ghi' => (int) 18, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 7, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 5, 'sun' => (int) 2, 'lal' => (int) 9, 'lja' => (int) 5, 'lonja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 9, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 2, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 3, 'stu' => (int) 6, 'pvu' => (int) 4, 'ptr' => (int) 8, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 3, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 1, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 5, 'sas' => (int) 5, 'shi' => (int) 6, 'smo' => (int) 6, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 3, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420150' $species_info = array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ) $local_species = 'lja' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000968', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p31690' => 'bna', 'A03p36040' => 'bna', 'A03p53730' => 'bna', 'A04p01410' => 'bna', 'A05p05420' => 'bna', 'A05p39630' => 'bna', 'A05p39640' => 'bna', 'A09p00970' => 'bna', 'A09p53060' => 'bna', 'A10p31890' => 'bna', 'Aa31LG10G15040' => 'aar', 'Aa31LG1G21090' => 'aar', 'Aa31LG1G26900' => 'aar', 'Aa31LG3G1820' => 'aar', 'Aa31LG5G1100' => 'aar', 'Aa31LG6G4740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2265' => 'aag', 'Actinidia07998' => 'ach', 'Actinidia11266' => 'ach', 'Actinidia12682' => 'ach', 'Actinidia26479' => 'ach', 'Actinidia31406' => 'ach', 'Actinidia32437' => 'ach', 'Actinidia38862' => 'ach', 'Ah.05g174230' => 'amhyb', 'Ah.05g179070' => 'amhyb', 'Ah.05g179090' => 'amhyb', 'Ah.12g059950' => 'amhyb', 'AL3G20480' => 'aly', 'AL4G44520' => 'aly', 'AL5G43110' => 'aly', 'AL6G13890' => 'aly', 'AL6G52620' => 'aly', 'AL7G30830' => 'aly', 'Aqoxy1G00899' => 'aox', 'Aqoxy5G04333' => 'aox', 'Aqoxy7G00641' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3IZ0NN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4EF6AW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W9P8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79GA3M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C43NQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFCU6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G95YVJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCHK29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LU1UG8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX91RN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGB4B1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8DA0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9H7JI' => 'arhy', 'AT3G09320' => 'ath', 'AT3G60800' => 'ath', 'AT4G00840' => 'ath', 'AT4G22750' => 'ath', 'AT5G04270' => 'ath', 'ATR0090G003' => 'atr', 'ATR0559G349' => 'atr', 'ATR0680G261' => 'atr', 'ATR0810G048' => 'atr', 'Atru.chr12.831' => 'acertr', 'Atru.chr5.303' => 'acertr', 'Atru.chr5.748' => 'acertr', 'Atru.chr8.1999' => 'acertr', 'Atru.chr9.1436' => 'acertr', 'AUR62004211' => 'cqu', 'AUR62004548' => 'cqu', 'AUR62013637' => 'cqu', 'AUR62022662' => 'cqu', 'AUR62025777' => 'cqu', 'AUR62042386' => 'cqu', 'BcaB01g02310' => 'bca', 'BcaB01g06062' => 'bca', 'BcaB02g08975' => 'bca', 'BcaB02g08980' => 'bca', 'BcaC01g04228' => 'bca', 'BcaC01g06830' => 'bca', 'BcaC02g10186' => 'bca', 'BcaC02g12214' => 'bca', 'BcaC04g24101' => 'bca', 'BcaC05g29520' => 'bca', 'BcaC05g29661' => 'bca', 'BcaC06g32130' => 'bca', 'BcaC06g32131' => 'bca', 'BcaC07g40601' => 'bca', 'BcaC07g42641' => 'bca', 'BcaNung01038' => 'bca', 'BcaNung01676' => 'bca', 'BcaNung02480' => 'bca', 'BcaNung07376' => 'bca', 'BolC3t16146H' => 'bol', 'BolC3t16637H' => 'bol', 'BolC4t22257H' => 'bol', 'BolC4t24728H' => 'bol', 'BolC5t34517H' => 'bol', 'BolC7t45703H' => 'bol', 'BolC8t51166H' => 'bol', 'BolC9t53038H' => 'bol', 'BolC9t60000H' => 'bol', 'BraA01t01345Z' => 'bra', 'BraA01t01346Z' => 'bra', 'BraA01t01348Z' => 'bra', 'BraA03t12347Z' => 'bra', 'BraA03t12775Z' => 'bra', 'BraA03t14439Z' => 'bra', 'BraA04t15860Z' => 'bra', 'BraA05t19511Z' => 'bra', 'BraA05t22746Z' => 'bra', 'BraA09t35767Z' => 'bra', 'BraA09t40732Z' => 'bra', 'BraA10t45233Z' => 'bra', 'C03p38720' => 'bna', 'C03p43680' => 'bna', 'C04p06350' => 'bna', 'C04p31800' => 'bna', 'C05p58680' => 'bna', 'C07p52110' => 'bna', 'C08p35760' => 'bna', 'C09p01050' => 'bna', 'C09p72600' => 'bna', 'CAN.G106.2' => 'can', 'CAN.G1482.1' => 'can', 'CAN.G324.12' => 'can', 'CAN.G388.20' => 'can', 'CAN.G412.7' => 'can', 'CAN.G694.32' => 'can', 'CAN.G92.12' => 'can', 'CANSAT11G2353' => 'cansat', 'CANSAT21G1398' => 'cansat', 'CANSAT56G2456' => 'cansat', 'CANSAT56G3031' => 'cansat', 'CANSAT56G4539' => 'cansat', 'CARHR083680' => 'chi', 'CARHR171190' => 'chi', 'CARHR209010' => 'chi', 'CARHR229680' => 'chi', 'CARHR249490' => 'chi', 'Carub.0003s0844' => 'cru', 'Carub.0005s2755' => 'cru', 'Carub.0006s0322' => 'cru', 'Carub.0006s3586' => 'cru', 'Carub.0007s1855' => 'cru', 'Ca_07808_v3' => 'car', 'Ca_09535_v3' => 'car', 'Ca_10548_v3' => 'car', 'Ca_19913_v3' => 'car', 'Ca_19916_v3' => 'car', 'Ca_19975_v3' => 'car', 'CBR_g22876' => 'cbr', 'CBR_g22879' => 'cbr', 'CBR_g38491' => 'cbr', 'CBR_g54185' => 'cbr', 'CBR_g54190' => 'cbr', 'Cc02_g11020' => 'ccan', 'Cc02_g23920' => 'ccan', 'Cc02_g39860' => 'ccan', 'Cc02_g39870' => 'ccan', 'Cc03_g06760' => 'ccan', 'Cc06_g02450' => 'ccan', 'Cc09_g09450' => 'ccan', 'CDE02G1959' => 'cde', 'CDE04G0600' => 'cde', 'CDE07G1996' => 'cde', 'CDE07G2078' => 'cde', 'CDE11G0611' => 'cde', 'Cfa001683' => 'cfa', 'Cfa001734' => 'cfa', 'Cfa001737' => 'cfa', 'Cfa003751' => 'cfa', 'Cfa012019' => 'cfa', 'Cfa017353' => 'cfa', 'Cfa017732' => 'cfa', 'Cfa022464' => 'cfa', 'Ciclev10012400m.g' => 'ccl', 'Ciclev10021242m.g' => 'ccl', 'Ciclev10021302m.g' => 'ccl', 'Ciclev10021463m.g' => 'ccl', 'Ciclev10032359m.g' => 'ccl', 'CiPaw.01G081000' => 'cil', 'CiPaw.01G262500' => 'cil', 'CiPaw.01G269800' => 'cil', 'CiPaw.02G168400' => 'cil', 'CiPaw.05G119500' => 'cil', 'CiPaw.11G147300' => 'cil', 'ClCG01G003630' => 'cla', 'ClCG05G000510' => 'cla', 'ClCG05G002300' => 'cla', 'ClCG08G007650' => 'cla', 'ClCG10G021250' => 'cla', 'COL.COLO4_06218' => 'col', 'COL.COLO4_12538' => 'col', 'COL.COLO4_14775' => 'col', 'COL.COLO4_23875' => 'col', 'Cpa.g.sc141.16' => 'cpa', 'Cpa.g.sc169.16' => 'cpa', 'Cpa.g.sc244.4' => 'cpa', 'Cpa.g.sc244.5' => 'cpa', 'Cpa.g.sc29.87' => 'cpa', 'Cpa.g.sc53.115' => 'cpa', 'Cre03.g207502' => 'cre', 'Cre06.g277000' => 'cre', 'Cre09.g394050' => 'cre', 'CsaV3_3G007680' => 'csa', 'CsaV3_3G009710' => 'csa', 'CsaV3_3G034790' => 'csa', 'CsaV3_5G003750' => 'csa', 'CsaV3_6G036620' => 'csa', 'CSS0002288' => 'camsi', 'CSS0011250' => 'camsi', 'CSS0021619' => 'camsi', 'CSS0046701' => 'camsi', 'DCAR_006420' => 'dca', 'DCAR_006865' => 'dca', 'DCAR_008558' => 'dca', 'DCAR_028754' => 'dca', 'DCAR_028755' => 'dca', 'Dinv31218' => 'din', 'Dinv32371' => 'din', 'Dinv34250' => 'din', 'Dinv37156' => 'din', 'Dinv43704' => 'din', 'Duzib093G1811' => 'dzi', 'Duzib106G1622' => 'dzi', 'Duzib114G0504' => 'dzi', 'Duzib128G0338' => 'dzi', 'Duzib128G1577' => 'dzi', 'Duzib133G0104' => 'dzi', 'Duzib133G1080' => 'dzi', 'Duzib138G0324' => 'dzi', 'Duzib138G0394' => 'dzi', 'Duzib205G0122' => 'dzi', 'Duzib268G1020' => 'dzi', 'Duzib268G1359' => 'dzi', 'ECA232G3929' => 'eca', 'ECA236G2210' => 'eca', 'ECA236G2287' => 'eca', 'ECA240G4568' => 'eca', 'ECA247G0894' => 'eca', 'EL10Ac1g00200' => 'bvu', 'EL10Ac1g00886' => 'bvu', 'EL10As1g23091' => 'bvu', 'EL10As1g23092' => 'bvu', 'Eucgr.A01284' => 'egr', 'Eucgr.A01285' => 'egr', 'Eucgr.D02456' => 'egr', 'Eucgr.E00018' => 'egr', 'Eucgr.E01439' => 'egr', 'Eucgr.G02859' => 'egr', 'FAN01G0168' => 'fan', 'FAN01G0453' => 'fan', 'FAN01G2761' => 'fan', 'FAN02G1239' => 'fan', 'FAN03G0645' => 'fan', 'FAN03G2707' => 'fan', 'FAN03G2978' => 'fan', 'FAN04G0227' => 'fan', 'FAN06G0091' => 'fan', 'FAN06G1418' => 'fan', 'FAN06G1512' => 'fan', 'FAN06G1986' => 'fan', 'FAN06G2905' => 'fan', 'FAN06G4325' => 'fan', 'FAN08G0033' => 'fan', 'FAN09G0642' => 'fan', 'FAN10G1763' => 'fan', 'FAN10G2026' => 'fan', 'FAN10G2513' => 'fan', 'FAN10G3402' => 'fan', 'FAN10G3564' => 'fan', 'FAN10G3987' => 'fan', 'FAN13G1490' => 'fan', 'FAN14G5857' => 'fan', 'FAN18G1188' => 'fan', 'FvH4_5g00750' => 'fve', 'FvH4_6g13410' => 'fve', 'FvH4_7g11740' => 'fve', 'FvH4_7g17410' => 'fve', 'FvH4_7g18860' => 'fve', 'Glyma.01G099100' => 'gma', 'Glyma.01G142300' => 'gma', 'Glyma.03G025500' => 'gma', 'Glyma.03G069700' => 'gma', 'Glyma.03G260000' => 'gma', 'Glyma.09G269800' => 'gma', 'Glyma.10G208700' => 'gma', 'Glyma.18G220400' => 'gma', 'Glyma.20G182000' => 'gma', 'Gohir.A01G221726' => 'ghi', 'Gohir.A07G134600' => 'ghi', 'Gohir.A07G146000' => 'ghi', 'Gohir.A08G173900' => 'ghi', 'Gohir.A09G194900' => 'ghi', 'Gohir.A10G204100' => 'ghi', 'Gohir.A11G080600' => 'ghi', 'Gohir.A11G327500' => 'ghi', 'Gohir.A12G101800' => 'ghi', 'Gohir.D01G211200' => 'ghi', 'Gohir.D07G139200' => 'ghi', 'Gohir.D07G152100' => 'ghi', 'Gohir.D08G192600' => 'ghi', 'Gohir.D09G189200' => 'ghi', 'Gohir.D10G212000' => 'ghi', 'Gohir.D11G085200' => 'ghi', 'Gohir.D11G346400' => 'ghi', 'Gohir.D12G104800' => 'ghi', 'Gorai.001G151300' => 'gra', 'Gorai.001G174100' => 'gra', 'Gorai.002G257000' => 'gra', 'Gorai.004G202600' => 'gra', 'Gorai.007G090900' => 'gra', 'Gorai.007G376700' => 'gra', 'Gorai.008G114100' => 'gra', 'Gorai.011G237900' => 'gra', 'GSVIVG01005450001' => 'vvi', 'GSVIVG01016232001' => 'vvi', 'GSVIVG01026157001' => 'vvi', 'GSVIVG01027419001' => 'vvi', 'GSVIVG01027631001' => 'vvi', 'GSVIVG01034143001' => 'vvi', 'HanXRQChr03g0093921' => 'han', 'HanXRQChr04g0120001' => 'han', 'HanXRQChr04g0122561' => 'han', 'HanXRQChr09g0246851' => 'han', 'HanXRQChr10g0293311' => 'han', 'HanXRQChr13g0425231' => 'han', 'HanXRQChr16g0532571' => 'han', 'Haze_09050' => 'cav', 'Haze_15715' => 'cav', 'Haze_15716' => 'cav', 'Haze_16803' => 'cav', 'Haze_16850' => 'cav', 'Hma1.2p1_0301F.1_g118655' => 'hma', 'Hma1.2p1_0309F.1_g120590' => 'hma', 'Hma1.2p1_0936F.1_g238900' => 'hma', 'Hma1.2p1_3552F.1_g336740' => 'hma', 'HPP92_003520' => 'vpl', 'HPP92_006628' => 'vpl', 'HPP92_006645' => 'vpl', 'HPP92_014669' => 'vpl', 'HPP92_015077' => 'vpl', 'Hund16742' => 'sun', 'Hund17022' => 'sun', 'Lalb_Chr02g0152131' => 'lal', 'Lalb_Chr05g0225371' => 'lal', 'Lalb_Chr07g0189841' => 'lal', 'Lalb_Chr07g0192961' => 'lal', 'Lalb_Chr12g0208221' => 'lal', 'Lalb_Chr13g0291211' => 'lal', 'Lalb_Chr13g0291781' => 'lal', 'Lalb_Chr18g0044651' => 'lal', 'Lalb_Chr21g0313731' => 'lal', 'Lj1g0022533' => 'lja', 'Lj2A18T50' => 'lonja', 'Lj2A92G93' => 'lonja', 'Lj3A965T73' => 'lonja', 'Lj3g0000673' => 'lja', 'Lj3g0002666' => 'lja', 'Lj4g0016985' => 'lja', 'Lj5g0003625' => 'lja', 'Lj7A529G36' => 'lonja', 'Lj9A569T49' => 'lonja', 'Lj9A604T63' => 'lonja', 'Lsat_1_v5_gn_3_132060' => 'lsa', 'Lsat_1_v5_gn_4_68941' => 'lsa', 'Lsat_1_v5_gn_5_95580' => 'lsa', 'Lsat_1_v5_gn_7_161' => 'lsa', 'Lsat_1_v5_gn_7_7041' => 'lsa', 'Lsat_1_v5_gn_9_33481' => 'lsa', 'Lsat_1_v5_gn_9_68260' => 'lsa', 'Manes.01G073100' => 'mes', 'Manes.01G266300' => 'mes', 'Manes.02G033300' => 'mes', 'Manes.05G017900' => 'mes', 'Manes.05G046100' => 'mes', 'Manes.08G080900' => 'mes', 'Manes.10G049400' => 'mes', 'Mapoly0009s0186' => 'mpo', 'Mapoly0036s0118' => 'mpo', 'Mapoly0101s0046' => 'mpo', 'MBI04_g30218_MAGBIO' => 'mbi', 'MBI04_g35564_MAGBIO' => 'mbi', 'MBI12_g34011_MAGBIO' => 'mbi', 'MBI14_g04655_MAGBIO' => 'mbi', 'MCO07G653' => 'mco', 'MCO10G173' => 'mco', 'MD01G1087100' => 'mdo', 'MD01G1104200' => 'mdo', 'MD02G1205100' => 'mdo', 'MD04G1079200' => 'mdo', 'MD04G1131400' => 'mdo', 'MD07G1121600' => 'mdo', 'MD07G1157300' => 'mdo', 'MD07G1171000' => 'mdo', 'MD12G1144500' => 'mdo', 'Medtr1g094610' => 'mtr', 'Medtr4g021795' => 'mtr', 'Medtr4g023760' => 'mtr', 'Medtr7g118050' => 'mtr', 'MELO3C005582.2' => 'cme', 'MELO3C005989.2' => 'cme', 'MELO3C006192.2' => 'cme', 'MELO3C009248.2' => 'cme', 'MELO3C019817.2' => 'cme', 'Migut.B01625' => 'egut', 'Migut.B01915' => 'egut', 'Migut.F01721' => 'egut', 'Migut.J00314' => 'egut', 'MSTRG.20742' => 'ama', 'MSTRG.8134' => 'ama', 'Nitab4.5_0000096g0010' => 'nta', 'Nitab4.5_0000202g0030' => 'nta', 'Nitab4.5_0000216g0370' => 'nta', 'Nitab4.5_0000457g0230' => 'nta', 'Nitab4.5_0001702g0170' => 'nta', 'Nitab4.5_0003607g0010' => 'nta', 'Nitab4.5_0004917g0020' => 'nta', 'Nitab4.5_0007059g0010' => 'nta', 'Nitab4.5_0007184g0010' => 'nta', 'Nitab4.5_0007346g0020' => 'nta', 'Nn1g00410' => 'nnu', 'Nn1g01252' => 'nnu', 'Nn2g11168' => 'nnu', 'Nn2g13403' => 'nnu', 'Nn2g13760' => 'nnu', 'Nn4g26380' => 'nnu', 'Oeu000806.2' => 'oeu', 'Oeu005788.1' => 'oeu', 'Oeu006900.3' => 'oeu', 'Oeu007797.1' => 'oeu', 'Oeu011932.1' => 'oeu', 'Oeu022739.1' => 'oeu', 'Oeu037918.1' => 'oeu', 'Oeu055490.2' => 'oeu', 'Os01g0844400' => 'osa', 'Os02g0819100' => 'osa', 'Os03g0804300' => 'osa', 'Os05g0458000' => 'osa', 'Os07g0467800' => 'osa', 'Os12g0602200' => 'osa', 'Peaxi162Scf00013g03444' => 'pax', 'Peaxi162Scf00094g01120' => 'pax', 'Peaxi162Scf00191g01211' => 'pax', 'Peaxi162Scf00238g01110' => 'pax', 'Peaxi162Scf00330g00719' => 'pax', 'Peaxi162Scf00627g00018' => 'pax', 'PGR031G2686' => 'pgr', 'PGR042G0809' => 'pgr', 'PGR142G0193' => 'pgr', 'PGSC0003DMG400011066' => 'stu', 'PGSC0003DMG400012041' => 'stu', 'PGSC0003DMG400013678' => 'stu', 'PGSC0003DMG400023477' => 'stu', 'PGSC0003DMG400025956' => 'stu', 'PGSC0003DMG401019151' => 'stu', 'Phvul.006G116400' => 'pvu', 'Phvul.007G097300' => 'pvu', 'Phvul.010G015000' => 'pvu', 'Phvul.010G083900' => 'pvu', 'Potri.001G117100' => 'ptr', 'Potri.002G147300' => 'ptr', 'Potri.003G115600' => 'ptr', 'Potri.006G087400' => 'ptr', 'Potri.010G226100' => 'ptr', 'Potri.014G069200' => 'ptr', 'Potri.014G104000' => 'ptr', 'Potri.016G100200' => 'ptr', 'Pp3c10_20450' => 'ppa', 'Pp3c1_42400' => 'ppa', 'Pp3c3_24390' => 'ppa', 'Pp3c3_2860' => 'ppa', 'PRCOL_00003193' => 'pco', 'Prupe.2G144500' => 'ppe', 'Prupe.2G195700' => 'ppe', 'Prupe.2G209800' => 'ppe', 'Prupe.5G080000' => 'ppe', 'Prupe.6G257900' => 'ppe', 'Psat3g001160' => 'psa', 'Psat6g181880' => 'psa', 'Psat7g233720' => 'psa', 'PSO063G7587' => 'pso', 'PSO339G2145' => 'pso', 'PSO339G3369' => 'pso', 'PSO478G2747' => 'pso', 'PSO513G0140' => 'pso', 'PSO782G1614' => 'pso', 'PSO782G4889' => 'pso', 'PSO782G5485' => 'pso', 'PSO801G0241' => 'pso', 'QL07p048854' => 'qlo', 'QL08p046745' => 'qlo', 'QL08p052606' => 'qlo', 'QL08p053414' => 'qlo', 'QL08p054868' => 'qlo', 'RcHm_v2.0_Chr1g0350251' => 'rch', 'RcHm_v2.0_Chr1g0360851' => 'rch', 'RcHm_v2.0_Chr1g0362791' => 'rch', 'RcHm_v2.0_Chr3g0466281' => 'rch', 'RcHm_v2.0_Chr7g0201481' => 'rch', 'Rhsim01G0148600' => 'rsi', 'Rhsim05G0194400' => 'rsi', 'Rhsim07G0000700' => 'rsi', 'Rhsim07G0000800' => 'rsi', 'Rhsim07G0027900' => 'rsi', 'Rhsim09G0149500' => 'rsi', 'RhsimUnG0186900' => 'rsi', 'Sabra01G0089900' => 'sbr', 'Sabra02G0114700' => 'sbr', 'Sabra02G0116300' => 'sbr', 'Sabra03G0080100' => 'sbr', 'Sabra08G0024300' => 'sbr', 'Sabra10G0174300' => 'sbr', 'Sabra14G0048900' => 'sbr', 'Sabra14G0076500' => 'sbr', 'SalBow5G2513' => 'sbo', 'Sc01g0002300' => 'sci', 'Sc01g0004450' => 'sci', 'Sc06g0001680' => 'sci', 'Sc23g0003580' => 'sci', 'Sed0000913' => 'sed', 'Sed0001655' => 'sed', 'Sed0007745' => 'sed', 'Sed0010951' => 'sed', 'Sed0017599' => 'sed', 'Sed0021405' => 'sed', 'Sed0022810' => 'sed', 'SEGI_07099' => 'sgi', 'SEGI_11931' => 'sgi', 'SEGI_13187' => 'sgi', 'SEGI_29958' => 'sgi', 'SEGI_36351' => 'sgi', 'SGA_v2.0_scaffold126G33770' => 'sas', 'SGA_v2.0_scaffold153G37003' => 'sas', 'SGA_v2.0_scaffold2G01359' => 'sas', 'SGA_v2.0_scaffold5G03064' => 'sas', 'SGA_v2.0_scaffold95G28903' => 'sas', 'SHI12701' => 'shi', 'SHI26410' => 'shi', 'SHI38997' => 'shi', 'SHI53759' => 'shi', 'SHI53886' => 'shi', 'SHI54714' => 'shi', 'SMO011G0041' => 'smo', 'SMO146G0251' => 'smo', 'SMO160G0004' => 'smo', 'SMO174G0057' => 'smo', 'SMO244G0089' => 'smo', 'SMO296G0011' => 'smo', 'Solyc01g091280.3' => 'sly', 'Solyc05g047610.3' => 'sly', 'Solyc05g047640.3' => 'sly', 'Solyc05g055630.3' => 'sly', 'Solyc10g018160.2' => 'sly', 'Solyc10g084820.2' => 'sly', 'Solyc10g086565.2' => 'sly', 'Sopen01g037030' => 'spe', 'Sopen05g027920' => 'spe', 'Sopen05g034070' => 'spe', 'Sopen10g007260' => 'spe', 'Sopen10g034260' => 'spe', 'Sopen10g035950' => 'spe', 'Sp3g07710' => 'spa', 'Sp4g27420' => 'spa', 'Sp5g02450' => 'spa', 'Sp6g01280' => 'spa', 'Sp6g38480' => 'spa', 'Sp7g20780' => 'spa', 'TAR374G1413' => 'tar', 'TAR623G1777' => 'tar', 'TAR629G2370' => 'tar', 'TAR633G1759' => 'tar', 'TAR636G3387' => 'tar', 'THA.LOC104802447' => 'tha', 'THA.LOC104813916' => 'tha', 'THA.LOC104816423' => 'tha', 'THA.LOC104817246' => 'tha', 'THA.LOC104825895' => 'tha', 'Thecc.01G335200' => 'tca', 'Thecc.01G377400' => 'tca', 'Thecc.03G262200' => 'tca', 'Thecc.05G036800' => 'tca', 'Thecc.10G080500' => 'tca', 'Thecc.10G080800' => 'tca', 'Thhalv10001560m.g' => 'esa', 'Thhalv10006120m.g' => 'esa', 'Thhalv10014375m.g' => 'esa', 'Thhalv10021264m.g' => 'esa', 'Thhalv10028856m.g' => 'esa', 'TPR.G1914' => 'tpr', 'TPR.G4757' => 'tpr', 'TPR.G5595' => 'tpr', 'TWI14G0952' => 'twi', 'TWI14G1307' => 'twi', 'TWI38G2143' => 'twi', 'TWI59G0826' => 'twi', 'TWI77G0527' => 'twi', 'TWI81G0150' => 'twi', 'unitig_21.g21018' => 'ugi', 'unitig_26.g9725' => 'ugi', 'unitig_744.g24653' => 'ugi', 'unitig_749.g13778' => 'ugi', 'unitig_899.g15035' => 'ugi', 'vmacro04296' => 'vma', 'vmacro04852' => 'vma', 'vmacro13404' => 'vma', 'vmacro20169' => 'vma', 'vmacro21014' => 'vma', 'VMungo0331G0237' => 'vmu', 'VMungo0331G0706' => 'vmu', 'VMungo0331G1361' => 'vmu', 'VMungo0331G1489' => 'vmu', 'VMungo0540G1037' => 'vmu', 'VMungo0720G2487' => 'vmu', 'VMungo0720G2721' => 'vmu', 'Zm00001eb086860' => 'zma', 'Zm00001eb104760' => 'zma', 'Zm00001eb148220' => 'zma', 'Zm00001eb259030' => 'zma', 'Zm00001eb289590' => 'zma', 'Zm00001eb420150' => 'zma' ), 'gf_id' => 'HOM05D000968', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000968' ), 'data_identifier' => 'HOM05D000968', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000968', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p31690' => 'bna', 'A03p36040' => 'bna', 'A03p53730' => 'bna', 'A04p01410' => 'bna', 'A05p05420' => 'bna', 'A05p39630' => 'bna', 'A05p39640' => 'bna', 'A09p00970' => 'bna', 'A09p53060' => 'bna', 'A10p31890' => 'bna', 'Aa31LG10G15040' => 'aar', 'Aa31LG1G21090' => 'aar', 'Aa31LG1G26900' => 'aar', 'Aa31LG3G1820' => 'aar', 'Aa31LG5G1100' => 'aar', 'Aa31LG6G4740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2265' => 'aag', 'Actinidia07998' => 'ach', 'Actinidia11266' => 'ach', 'Actinidia12682' => 'ach', 'Actinidia26479' => 'ach', 'Actinidia31406' => 'ach', 'Actinidia32437' => 'ach', 'Actinidia38862' => 'ach', 'Ah.05g174230' => 'amhyb', 'Ah.05g179070' => 'amhyb', 'Ah.05g179090' => 'amhyb', 'Ah.12g059950' => 'amhyb', 'AL3G20480' => 'aly', 'AL4G44520' => 'aly', 'AL5G43110' => 'aly', 'AL6G13890' => 'aly', 'AL6G52620' => 'aly', 'AL7G30830' => 'aly', 'Aqoxy1G00899' => 'aox', 'Aqoxy5G04333' => 'aox', 'Aqoxy7G00641' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3IZ0NN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4EF6AW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W9P8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79GA3M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C43NQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFCU6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G95YVJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCHK29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LU1UG8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX91RN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGB4B1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8DA0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9H7JI' => 'arhy', 'AT3G09320' => 'ath', 'AT3G60800' => 'ath', 'AT4G00840' => 'ath', 'AT4G22750' => 'ath', 'AT5G04270' => 'ath', 'ATR0090G003' => 'atr', 'ATR0559G349' => 'atr', 'ATR0680G261' => 'atr', 'ATR0810G048' => 'atr', 'Atru.chr12.831' => 'acertr', 'Atru.chr5.303' => 'acertr', 'Atru.chr5.748' => 'acertr', 'Atru.chr8.1999' => 'acertr', 'Atru.chr9.1436' => 'acertr', 'AUR62004211' => 'cqu', 'AUR62004548' => 'cqu', 'AUR62013637' => 'cqu', 'AUR62022662' => 'cqu', 'AUR62025777' => 'cqu', 'AUR62042386' => 'cqu', 'BcaB01g02310' => 'bca', 'BcaB01g06062' => 'bca', 'BcaB02g08975' => 'bca', 'BcaB02g08980' => 'bca', 'BcaC01g04228' => 'bca', 'BcaC01g06830' => 'bca', 'BcaC02g10186' => 'bca', 'BcaC02g12214' => 'bca', 'BcaC04g24101' => 'bca', 'BcaC05g29520' => 'bca', 'BcaC05g29661' => 'bca', 'BcaC06g32130' => 'bca', 'BcaC06g32131' => 'bca', 'BcaC07g40601' => 'bca', 'BcaC07g42641' => 'bca', 'BcaNung01038' => 'bca', 'BcaNung01676' => 'bca', 'BcaNung02480' => 'bca', 'BcaNung07376' => 'bca', 'BolC3t16146H' => 'bol', 'BolC3t16637H' => 'bol', 'BolC4t22257H' => 'bol', 'BolC4t24728H' => 'bol', 'BolC5t34517H' => 'bol', 'BolC7t45703H' => 'bol', 'BolC8t51166H' => 'bol', 'BolC9t53038H' => 'bol', 'BolC9t60000H' => 'bol', 'BraA01t01345Z' => 'bra', 'BraA01t01346Z' => 'bra', 'BraA01t01348Z' => 'bra', 'BraA03t12347Z' => 'bra', 'BraA03t12775Z' => 'bra', 'BraA03t14439Z' => 'bra', 'BraA04t15860Z' => 'bra', 'BraA05t19511Z' => 'bra', 'BraA05t22746Z' => 'bra', 'BraA09t35767Z' => 'bra', 'BraA09t40732Z' => 'bra', 'BraA10t45233Z' => 'bra', 'C03p38720' => 'bna', 'C03p43680' => 'bna', 'C04p06350' => 'bna', 'C04p31800' => 'bna', 'C05p58680' => 'bna', 'C07p52110' => 'bna', 'C08p35760' => 'bna', 'C09p01050' => 'bna', 'C09p72600' => 'bna', 'CAN.G106.2' => 'can', 'CAN.G1482.1' => 'can', 'CAN.G324.12' => 'can', 'CAN.G388.20' => 'can', 'CAN.G412.7' => 'can', 'CAN.G694.32' => 'can', 'CAN.G92.12' => 'can', 'CANSAT11G2353' => 'cansat', 'CANSAT21G1398' => 'cansat', 'CANSAT56G2456' => 'cansat', 'CANSAT56G3031' => 'cansat', 'CANSAT56G4539' => 'cansat', 'CARHR083680' => 'chi', 'CARHR171190' => 'chi', 'CARHR209010' => 'chi', 'CARHR229680' => 'chi', 'CARHR249490' => 'chi', 'Carub.0003s0844' => 'cru', 'Carub.0005s2755' => 'cru', 'Carub.0006s0322' => 'cru', 'Carub.0006s3586' => 'cru', 'Carub.0007s1855' => 'cru', 'Ca_07808_v3' => 'car', 'Ca_09535_v3' => 'car', 'Ca_10548_v3' => 'car', 'Ca_19913_v3' => 'car', 'Ca_19916_v3' => 'car', 'Ca_19975_v3' => 'car', 'CBR_g22876' => 'cbr', 'CBR_g22879' => 'cbr', 'CBR_g38491' => 'cbr', 'CBR_g54185' => 'cbr', 'CBR_g54190' => 'cbr', 'Cc02_g11020' => 'ccan', 'Cc02_g23920' => 'ccan', 'Cc02_g39860' => 'ccan', 'Cc02_g39870' => 'ccan', 'Cc03_g06760' => 'ccan', 'Cc06_g02450' => 'ccan', 'Cc09_g09450' => 'ccan', 'CDE02G1959' => 'cde', 'CDE04G0600' => 'cde', 'CDE07G1996' => 'cde', 'CDE07G2078' => 'cde', 'CDE11G0611' => 'cde', 'Cfa001683' => 'cfa', 'Cfa001734' => 'cfa', 'Cfa001737' => 'cfa', 'Cfa003751' => 'cfa', 'Cfa012019' => 'cfa', 'Cfa017353' => 'cfa', 'Cfa017732' => 'cfa', 'Cfa022464' => 'cfa', 'Ciclev10012400m.g' => 'ccl', 'Ciclev10021242m.g' => 'ccl', 'Ciclev10021302m.g' => 'ccl', 'Ciclev10021463m.g' => 'ccl', 'Ciclev10032359m.g' => 'ccl', 'CiPaw.01G081000' => 'cil', 'CiPaw.01G262500' => 'cil', 'CiPaw.01G269800' => 'cil', 'CiPaw.02G168400' => 'cil', 'CiPaw.05G119500' => 'cil', 'CiPaw.11G147300' => 'cil', 'ClCG01G003630' => 'cla', 'ClCG05G000510' => 'cla', 'ClCG05G002300' => 'cla', 'ClCG08G007650' => 'cla', 'ClCG10G021250' => 'cla', 'COL.COLO4_06218' => 'col', 'COL.COLO4_12538' => 'col', 'COL.COLO4_14775' => 'col', 'COL.COLO4_23875' => 'col', 'Cpa.g.sc141.16' => 'cpa', 'Cpa.g.sc169.16' => 'cpa', 'Cpa.g.sc244.4' => 'cpa', 'Cpa.g.sc244.5' => 'cpa', 'Cpa.g.sc29.87' => 'cpa', 'Cpa.g.sc53.115' => 'cpa', 'Cre03.g207502' => 'cre', 'Cre06.g277000' => 'cre', 'Cre09.g394050' => 'cre', 'CsaV3_3G007680' => 'csa', 'CsaV3_3G009710' => 'csa', 'CsaV3_3G034790' => 'csa', 'CsaV3_5G003750' => 'csa', 'CsaV3_6G036620' => 'csa', 'CSS0002288' => 'camsi', 'CSS0011250' => 'camsi', 'CSS0021619' => 'camsi', 'CSS0046701' => 'camsi', 'DCAR_006420' => 'dca', 'DCAR_006865' => 'dca', 'DCAR_008558' => 'dca', 'DCAR_028754' => 'dca', 'DCAR_028755' => 'dca', 'Dinv31218' => 'din', 'Dinv32371' => 'din', 'Dinv34250' => 'din', 'Dinv37156' => 'din', 'Dinv43704' => 'din', 'Duzib093G1811' => 'dzi', 'Duzib106G1622' => 'dzi', 'Duzib114G0504' => 'dzi', 'Duzib128G0338' => 'dzi', 'Duzib128G1577' => 'dzi', 'Duzib133G0104' => 'dzi', 'Duzib133G1080' => 'dzi', 'Duzib138G0324' => 'dzi', 'Duzib138G0394' => 'dzi', 'Duzib205G0122' => 'dzi', 'Duzib268G1020' => 'dzi', 'Duzib268G1359' => 'dzi', 'ECA232G3929' => 'eca', 'ECA236G2210' => 'eca', 'ECA236G2287' => 'eca', 'ECA240G4568' => 'eca', 'ECA247G0894' => 'eca', 'EL10Ac1g00200' => 'bvu', 'EL10Ac1g00886' => 'bvu', 'EL10As1g23091' => 'bvu', 'EL10As1g23092' => 'bvu', 'Eucgr.A01284' => 'egr', 'Eucgr.A01285' => 'egr', 'Eucgr.D02456' => 'egr', 'Eucgr.E00018' => 'egr', 'Eucgr.E01439' => 'egr', 'Eucgr.G02859' => 'egr', 'FAN01G0168' => 'fan', 'FAN01G0453' => 'fan', 'FAN01G2761' => 'fan', 'FAN02G1239' => 'fan', 'FAN03G0645' => 'fan', 'FAN03G2707' => 'fan', 'FAN03G2978' => 'fan', 'FAN04G0227' => 'fan', 'FAN06G0091' => 'fan', 'FAN06G1418' => 'fan', 'FAN06G1512' => 'fan', 'FAN06G1986' => 'fan', 'FAN06G2905' => 'fan', 'FAN06G4325' => 'fan', 'FAN08G0033' => 'fan', 'FAN09G0642' => 'fan', 'FAN10G1763' => 'fan', 'FAN10G2026' => 'fan', 'FAN10G2513' => 'fan', 'FAN10G3402' => 'fan', 'FAN10G3564' => 'fan', 'FAN10G3987' => 'fan', 'FAN13G1490' => 'fan', 'FAN14G5857' => 'fan', 'FAN18G1188' => 'fan', 'FvH4_5g00750' => 'fve', 'FvH4_6g13410' => 'fve', 'FvH4_7g11740' => 'fve', 'FvH4_7g17410' => 'fve', 'FvH4_7g18860' => 'fve', 'Glyma.01G099100' => 'gma', 'Glyma.01G142300' => 'gma', 'Glyma.03G025500' => 'gma', 'Glyma.03G069700' => 'gma', 'Glyma.03G260000' => 'gma', 'Glyma.09G269800' => 'gma', 'Glyma.10G208700' => 'gma', 'Glyma.18G220400' => 'gma', 'Glyma.20G182000' => 'gma', 'Gohir.A01G221726' => 'ghi', 'Gohir.A07G134600' => 'ghi', 'Gohir.A07G146000' => 'ghi', 'Gohir.A08G173900' => 'ghi', 'Gohir.A09G194900' => 'ghi', 'Gohir.A10G204100' => 'ghi', 'Gohir.A11G080600' => 'ghi', 'Gohir.A11G327500' => 'ghi', 'Gohir.A12G101800' => 'ghi', 'Gohir.D01G211200' => 'ghi', 'Gohir.D07G139200' => 'ghi', 'Gohir.D07G152100' => 'ghi', 'Gohir.D08G192600' => 'ghi', 'Gohir.D09G189200' => 'ghi', 'Gohir.D10G212000' => 'ghi', 'Gohir.D11G085200' => 'ghi', 'Gohir.D11G346400' => 'ghi', 'Gohir.D12G104800' => 'ghi', 'Gorai.001G151300' => 'gra', 'Gorai.001G174100' => 'gra', 'Gorai.002G257000' => 'gra', 'Gorai.004G202600' => 'gra', 'Gorai.007G090900' => 'gra', 'Gorai.007G376700' => 'gra', 'Gorai.008G114100' => 'gra', 'Gorai.011G237900' => 'gra', 'GSVIVG01005450001' => 'vvi', 'GSVIVG01016232001' => 'vvi', 'GSVIVG01026157001' => 'vvi', 'GSVIVG01027419001' => 'vvi', 'GSVIVG01027631001' => 'vvi', 'GSVIVG01034143001' => 'vvi', 'HanXRQChr03g0093921' => 'han', 'HanXRQChr04g0120001' => 'han', 'HanXRQChr04g0122561' => 'han', 'HanXRQChr09g0246851' => 'han', 'HanXRQChr10g0293311' => 'han', 'HanXRQChr13g0425231' => 'han', 'HanXRQChr16g0532571' => 'han', 'Haze_09050' => 'cav', 'Haze_15715' => 'cav', 'Haze_15716' => 'cav', 'Haze_16803' => 'cav', 'Haze_16850' => 'cav', 'Hma1.2p1_0301F.1_g118655' => 'hma', 'Hma1.2p1_0309F.1_g120590' => 'hma', 'Hma1.2p1_0936F.1_g238900' => 'hma', 'Hma1.2p1_3552F.1_g336740' => 'hma', 'HPP92_003520' => 'vpl', 'HPP92_006628' => 'vpl', 'HPP92_006645' => 'vpl', 'HPP92_014669' => 'vpl', 'HPP92_015077' => 'vpl', 'Hund16742' => 'sun', 'Hund17022' => 'sun', 'Lalb_Chr02g0152131' => 'lal', 'Lalb_Chr05g0225371' => 'lal', 'Lalb_Chr07g0189841' => 'lal', 'Lalb_Chr07g0192961' => 'lal', 'Lalb_Chr12g0208221' => 'lal', 'Lalb_Chr13g0291211' => 'lal', 'Lalb_Chr13g0291781' => 'lal', 'Lalb_Chr18g0044651' => 'lal', 'Lalb_Chr21g0313731' => 'lal', 'Lj1g0022533' => 'lja', 'Lj2A18T50' => 'lonja', 'Lj2A92G93' => 'lonja', 'Lj3A965T73' => 'lonja', 'Lj3g0000673' => 'lja', 'Lj3g0002666' => 'lja', 'Lj4g0016985' => 'lja', 'Lj5g0003625' => 'lja', 'Lj7A529G36' => 'lonja', 'Lj9A569T49' => 'lonja', 'Lj9A604T63' => 'lonja', 'Lsat_1_v5_gn_3_132060' => 'lsa', 'Lsat_1_v5_gn_4_68941' => 'lsa', 'Lsat_1_v5_gn_5_95580' => 'lsa', 'Lsat_1_v5_gn_7_161' => 'lsa', 'Lsat_1_v5_gn_7_7041' => 'lsa', 'Lsat_1_v5_gn_9_33481' => 'lsa', 'Lsat_1_v5_gn_9_68260' => 'lsa', 'Manes.01G073100' => 'mes', 'Manes.01G266300' => 'mes', 'Manes.02G033300' => 'mes', 'Manes.05G017900' => 'mes', 'Manes.05G046100' => 'mes', 'Manes.08G080900' => 'mes', 'Manes.10G049400' => 'mes', 'Mapoly0009s0186' => 'mpo', 'Mapoly0036s0118' => 'mpo', 'Mapoly0101s0046' => 'mpo', 'MBI04_g30218_MAGBIO' => 'mbi', 'MBI04_g35564_MAGBIO' => 'mbi', 'MBI12_g34011_MAGBIO' => 'mbi', 'MBI14_g04655_MAGBIO' => 'mbi', 'MCO07G653' => 'mco', 'MCO10G173' => 'mco', 'MD01G1087100' => 'mdo', 'MD01G1104200' => 'mdo', 'MD02G1205100' => 'mdo', 'MD04G1079200' => 'mdo', 'MD04G1131400' => 'mdo', 'MD07G1121600' => 'mdo', 'MD07G1157300' => 'mdo', 'MD07G1171000' => 'mdo', 'MD12G1144500' => 'mdo', 'Medtr1g094610' => 'mtr', 'Medtr4g021795' => 'mtr', 'Medtr4g023760' => 'mtr', 'Medtr7g118050' => 'mtr', 'MELO3C005582.2' => 'cme', 'MELO3C005989.2' => 'cme', 'MELO3C006192.2' => 'cme', 'MELO3C009248.2' => 'cme', 'MELO3C019817.2' => 'cme', 'Migut.B01625' => 'egut', 'Migut.B01915' => 'egut', 'Migut.F01721' => 'egut', 'Migut.J00314' => 'egut', 'MSTRG.20742' => 'ama', 'MSTRG.8134' => 'ama', 'Nitab4.5_0000096g0010' => 'nta', 'Nitab4.5_0000202g0030' => 'nta', 'Nitab4.5_0000216g0370' => 'nta', 'Nitab4.5_0000457g0230' => 'nta', 'Nitab4.5_0001702g0170' => 'nta', 'Nitab4.5_0003607g0010' => 'nta', 'Nitab4.5_0004917g0020' => 'nta', 'Nitab4.5_0007059g0010' => 'nta', 'Nitab4.5_0007184g0010' => 'nta', 'Nitab4.5_0007346g0020' => 'nta', 'Nn1g00410' => 'nnu', 'Nn1g01252' => 'nnu', 'Nn2g11168' => 'nnu', 'Nn2g13403' => 'nnu', 'Nn2g13760' => 'nnu', 'Nn4g26380' => 'nnu', 'Oeu000806.2' => 'oeu', 'Oeu005788.1' => 'oeu', 'Oeu006900.3' => 'oeu', 'Oeu007797.1' => 'oeu', 'Oeu011932.1' => 'oeu', 'Oeu022739.1' => 'oeu', 'Oeu037918.1' => 'oeu', 'Oeu055490.2' => 'oeu', 'Os01g0844400' => 'osa', 'Os02g0819100' => 'osa', 'Os03g0804300' => 'osa', 'Os05g0458000' => 'osa', 'Os07g0467800' => 'osa', 'Os12g0602200' => 'osa', 'Peaxi162Scf00013g03444' => 'pax', 'Peaxi162Scf00094g01120' => 'pax', 'Peaxi162Scf00191g01211' => 'pax', 'Peaxi162Scf00238g01110' => 'pax', 'Peaxi162Scf00330g00719' => 'pax', 'Peaxi162Scf00627g00018' => 'pax', 'PGR031G2686' => 'pgr', 'PGR042G0809' => 'pgr', 'PGR142G0193' => 'pgr', 'PGSC0003DMG400011066' => 'stu', 'PGSC0003DMG400012041' => 'stu', 'PGSC0003DMG400013678' => 'stu', 'PGSC0003DMG400023477' => 'stu', 'PGSC0003DMG400025956' => 'stu', 'PGSC0003DMG401019151' => 'stu', 'Phvul.006G116400' => 'pvu', 'Phvul.007G097300' => 'pvu', 'Phvul.010G015000' => 'pvu', 'Phvul.010G083900' => 'pvu', 'Potri.001G117100' => 'ptr', 'Potri.002G147300' => 'ptr', 'Potri.003G115600' => 'ptr', 'Potri.006G087400' => 'ptr', 'Potri.010G226100' => 'ptr', 'Potri.014G069200' => 'ptr', 'Potri.014G104000' => 'ptr', 'Potri.016G100200' => 'ptr', 'Pp3c10_20450' => 'ppa', 'Pp3c1_42400' => 'ppa', 'Pp3c3_24390' => 'ppa', 'Pp3c3_2860' => 'ppa', 'PRCOL_00003193' => 'pco', 'Prupe.2G144500' => 'ppe', 'Prupe.2G195700' => 'ppe', 'Prupe.2G209800' => 'ppe', 'Prupe.5G080000' => 'ppe', 'Prupe.6G257900' => 'ppe', 'Psat3g001160' => 'psa', 'Psat6g181880' => 'psa', 'Psat7g233720' => 'psa', 'PSO063G7587' => 'pso', 'PSO339G2145' => 'pso', 'PSO339G3369' => 'pso', 'PSO478G2747' => 'pso', 'PSO513G0140' => 'pso', 'PSO782G1614' => 'pso', 'PSO782G4889' => 'pso', 'PSO782G5485' => 'pso', 'PSO801G0241' => 'pso', 'QL07p048854' => 'qlo', 'QL08p046745' => 'qlo', 'QL08p052606' => 'qlo', 'QL08p053414' => 'qlo', 'QL08p054868' => 'qlo', 'RcHm_v2.0_Chr1g0350251' => 'rch', 'RcHm_v2.0_Chr1g0360851' => 'rch', 'RcHm_v2.0_Chr1g0362791' => 'rch', 'RcHm_v2.0_Chr3g0466281' => 'rch', 'RcHm_v2.0_Chr7g0201481' => 'rch', 'Rhsim01G0148600' => 'rsi', 'Rhsim05G0194400' => 'rsi', 'Rhsim07G0000700' => 'rsi', 'Rhsim07G0000800' => 'rsi', 'Rhsim07G0027900' => 'rsi', 'Rhsim09G0149500' => 'rsi', 'RhsimUnG0186900' => 'rsi', 'Sabra01G0089900' => 'sbr', 'Sabra02G0114700' => 'sbr', 'Sabra02G0116300' => 'sbr', 'Sabra03G0080100' => 'sbr', 'Sabra08G0024300' => 'sbr', 'Sabra10G0174300' => 'sbr', 'Sabra14G0048900' => 'sbr', 'Sabra14G0076500' => 'sbr', 'SalBow5G2513' => 'sbo', 'Sc01g0002300' => 'sci', 'Sc01g0004450' => 'sci', 'Sc06g0001680' => 'sci', 'Sc23g0003580' => 'sci', 'Sed0000913' => 'sed', 'Sed0001655' => 'sed', 'Sed0007745' => 'sed', 'Sed0010951' => 'sed', 'Sed0017599' => 'sed', 'Sed0021405' => 'sed', 'Sed0022810' => 'sed', 'SEGI_07099' => 'sgi', 'SEGI_11931' => 'sgi', 'SEGI_13187' => 'sgi', 'SEGI_29958' => 'sgi', 'SEGI_36351' => 'sgi', 'SGA_v2.0_scaffold126G33770' => 'sas', 'SGA_v2.0_scaffold153G37003' => 'sas', 'SGA_v2.0_scaffold2G01359' => 'sas', 'SGA_v2.0_scaffold5G03064' => 'sas', 'SGA_v2.0_scaffold95G28903' => 'sas', 'SHI12701' => 'shi', 'SHI26410' => 'shi', 'SHI38997' => 'shi', 'SHI53759' => 'shi', 'SHI53886' => 'shi', 'SHI54714' => 'shi', 'SMO011G0041' => 'smo', 'SMO146G0251' => 'smo', 'SMO160G0004' => 'smo', 'SMO174G0057' => 'smo', 'SMO244G0089' => 'smo', 'SMO296G0011' => 'smo', 'Solyc01g091280.3' => 'sly', 'Solyc05g047610.3' => 'sly', 'Solyc05g047640.3' => 'sly', 'Solyc05g055630.3' => 'sly', 'Solyc10g018160.2' => 'sly', 'Solyc10g084820.2' => 'sly', 'Solyc10g086565.2' => 'sly', 'Sopen01g037030' => 'spe', 'Sopen05g027920' => 'spe', 'Sopen05g034070' => 'spe', 'Sopen10g007260' => 'spe', 'Sopen10g034260' => 'spe', 'Sopen10g035950' => 'spe', 'Sp3g07710' => 'spa', 'Sp4g27420' => 'spa', 'Sp5g02450' => 'spa', 'Sp6g01280' => 'spa', 'Sp6g38480' => 'spa', 'Sp7g20780' => 'spa', 'TAR374G1413' => 'tar', 'TAR623G1777' => 'tar', 'TAR629G2370' => 'tar', 'TAR633G1759' => 'tar', 'TAR636G3387' => 'tar', 'THA.LOC104802447' => 'tha', 'THA.LOC104813916' => 'tha', 'THA.LOC104816423' => 'tha', 'THA.LOC104817246' => 'tha', 'THA.LOC104825895' => 'tha', 'Thecc.01G335200' => 'tca', 'Thecc.01G377400' => 'tca', 'Thecc.03G262200' => 'tca', 'Thecc.05G036800' => 'tca', 'Thecc.10G080500' => 'tca', 'Thecc.10G080800' => 'tca', 'Thhalv10001560m.g' => 'esa', 'Thhalv10006120m.g' => 'esa', 'Thhalv10014375m.g' => 'esa', 'Thhalv10021264m.g' => 'esa', 'Thhalv10028856m.g' => 'esa', 'TPR.G1914' => 'tpr', 'TPR.G4757' => 'tpr', 'TPR.G5595' => 'tpr', 'TWI14G0952' => 'twi', 'TWI14G1307' => 'twi', 'TWI38G2143' => 'twi', 'TWI59G0826' => 'twi', 'TWI77G0527' => 'twi', 'TWI81G0150' => 'twi', 'unitig_21.g21018' => 'ugi', 'unitig_26.g9725' => 'ugi', 'unitig_744.g24653' => 'ugi', 'unitig_749.g13778' => 'ugi', 'unitig_899.g15035' => 'ugi', 'vmacro04296' => 'vma', 'vmacro04852' => 'vma', 'vmacro13404' => 'vma', 'vmacro20169' => 'vma', 'vmacro21014' => 'vma', 'VMungo0331G0237' => 'vmu', 'VMungo0331G0706' => 'vmu', 'VMungo0331G1361' => 'vmu', 'VMungo0331G1489' => 'vmu', 'VMungo0540G1037' => 'vmu', 'VMungo0720G2487' => 'vmu', 'VMungo0720G2721' => 'vmu', 'Zm00001eb086860' => 'zma', 'Zm00001eb104760' => 'zma', 'Zm00001eb148220' => 'zma', 'Zm00001eb259030' => 'zma', 'Zm00001eb289590' => 'zma', 'Zm00001eb420150' => 'zma' ) $gf_id = 'HOM05D000968' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000968' ) $data_identifier = 'HOM05D000968' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 19, 'bol' => (int) 9, 'bra' => (int) 12, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 5, 'ccan' => (int) 7, 'cde' => (int) 5, 'cfa' => (int) 8, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 4, 'dca' => (int) 5, 'din' => (int) 5, 'dzi' => (int) 12, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 25, 'fve' => (int) 5, 'gma' => (int) 9, 'ghi' => (int) 18, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 7, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 5, 'sun' => (int) 2, 'lal' => (int) 9, 'lja' => (int) 5, 'lonja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 9, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 2, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 3, 'stu' => (int) 6, 'pvu' => (int) 4, 'ptr' => (int) 8, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 3, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 1, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 5, 'sas' => (int) 5, 'shi' => (int) 6, 'smo' => (int) 6, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 3, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420150' $species_info = array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ) $local_species = 'lja' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000968', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p31690' => 'bna', 'A03p36040' => 'bna', 'A03p53730' => 'bna', 'A04p01410' => 'bna', 'A05p05420' => 'bna', 'A05p39630' => 'bna', 'A05p39640' => 'bna', 'A09p00970' => 'bna', 'A09p53060' => 'bna', 'A10p31890' => 'bna', 'Aa31LG10G15040' => 'aar', 'Aa31LG1G21090' => 'aar', 'Aa31LG1G26900' => 'aar', 'Aa31LG3G1820' => 'aar', 'Aa31LG5G1100' => 'aar', 'Aa31LG6G4740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2265' => 'aag', 'Actinidia07998' => 'ach', 'Actinidia11266' => 'ach', 'Actinidia12682' => 'ach', 'Actinidia26479' => 'ach', 'Actinidia31406' => 'ach', 'Actinidia32437' => 'ach', 'Actinidia38862' => 'ach', 'Ah.05g174230' => 'amhyb', 'Ah.05g179070' => 'amhyb', 'Ah.05g179090' => 'amhyb', 'Ah.12g059950' => 'amhyb', 'AL3G20480' => 'aly', 'AL4G44520' => 'aly', 'AL5G43110' => 'aly', 'AL6G13890' => 'aly', 'AL6G52620' => 'aly', 'AL7G30830' => 'aly', 'Aqoxy1G00899' => 'aox', 'Aqoxy5G04333' => 'aox', 'Aqoxy7G00641' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3IZ0NN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4EF6AW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W9P8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79GA3M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C43NQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFCU6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G95YVJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCHK29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LU1UG8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX91RN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGB4B1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8DA0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9H7JI' => 'arhy', 'AT3G09320' => 'ath', 'AT3G60800' => 'ath', 'AT4G00840' => 'ath', 'AT4G22750' => 'ath', 'AT5G04270' => 'ath', 'ATR0090G003' => 'atr', 'ATR0559G349' => 'atr', 'ATR0680G261' => 'atr', 'ATR0810G048' => 'atr', 'Atru.chr12.831' => 'acertr', 'Atru.chr5.303' => 'acertr', 'Atru.chr5.748' => 'acertr', 'Atru.chr8.1999' => 'acertr', 'Atru.chr9.1436' => 'acertr', 'AUR62004211' => 'cqu', 'AUR62004548' => 'cqu', 'AUR62013637' => 'cqu', 'AUR62022662' => 'cqu', 'AUR62025777' => 'cqu', 'AUR62042386' => 'cqu', 'BcaB01g02310' => 'bca', 'BcaB01g06062' => 'bca', 'BcaB02g08975' => 'bca', 'BcaB02g08980' => 'bca', 'BcaC01g04228' => 'bca', 'BcaC01g06830' => 'bca', 'BcaC02g10186' => 'bca', 'BcaC02g12214' => 'bca', 'BcaC04g24101' => 'bca', 'BcaC05g29520' => 'bca', 'BcaC05g29661' => 'bca', 'BcaC06g32130' => 'bca', 'BcaC06g32131' => 'bca', 'BcaC07g40601' => 'bca', 'BcaC07g42641' => 'bca', 'BcaNung01038' => 'bca', 'BcaNung01676' => 'bca', 'BcaNung02480' => 'bca', 'BcaNung07376' => 'bca', 'BolC3t16146H' => 'bol', 'BolC3t16637H' => 'bol', 'BolC4t22257H' => 'bol', 'BolC4t24728H' => 'bol', 'BolC5t34517H' => 'bol', 'BolC7t45703H' => 'bol', 'BolC8t51166H' => 'bol', 'BolC9t53038H' => 'bol', 'BolC9t60000H' => 'bol', 'BraA01t01345Z' => 'bra', 'BraA01t01346Z' => 'bra', 'BraA01t01348Z' => 'bra', 'BraA03t12347Z' => 'bra', 'BraA03t12775Z' => 'bra', 'BraA03t14439Z' => 'bra', 'BraA04t15860Z' => 'bra', 'BraA05t19511Z' => 'bra', 'BraA05t22746Z' => 'bra', 'BraA09t35767Z' => 'bra', 'BraA09t40732Z' => 'bra', 'BraA10t45233Z' => 'bra', 'C03p38720' => 'bna', 'C03p43680' => 'bna', 'C04p06350' => 'bna', 'C04p31800' => 'bna', 'C05p58680' => 'bna', 'C07p52110' => 'bna', 'C08p35760' => 'bna', 'C09p01050' => 'bna', 'C09p72600' => 'bna', 'CAN.G106.2' => 'can', 'CAN.G1482.1' => 'can', 'CAN.G324.12' => 'can', 'CAN.G388.20' => 'can', 'CAN.G412.7' => 'can', 'CAN.G694.32' => 'can', 'CAN.G92.12' => 'can', 'CANSAT11G2353' => 'cansat', 'CANSAT21G1398' => 'cansat', 'CANSAT56G2456' => 'cansat', 'CANSAT56G3031' => 'cansat', 'CANSAT56G4539' => 'cansat', 'CARHR083680' => 'chi', 'CARHR171190' => 'chi', 'CARHR209010' => 'chi', 'CARHR229680' => 'chi', 'CARHR249490' => 'chi', 'Carub.0003s0844' => 'cru', 'Carub.0005s2755' => 'cru', 'Carub.0006s0322' => 'cru', 'Carub.0006s3586' => 'cru', 'Carub.0007s1855' => 'cru', 'Ca_07808_v3' => 'car', 'Ca_09535_v3' => 'car', 'Ca_10548_v3' => 'car', 'Ca_19913_v3' => 'car', 'Ca_19916_v3' => 'car', 'Ca_19975_v3' => 'car', 'CBR_g22876' => 'cbr', 'CBR_g22879' => 'cbr', 'CBR_g38491' => 'cbr', 'CBR_g54185' => 'cbr', 'CBR_g54190' => 'cbr', 'Cc02_g11020' => 'ccan', 'Cc02_g23920' => 'ccan', 'Cc02_g39860' => 'ccan', 'Cc02_g39870' => 'ccan', 'Cc03_g06760' => 'ccan', 'Cc06_g02450' => 'ccan', 'Cc09_g09450' => 'ccan', 'CDE02G1959' => 'cde', 'CDE04G0600' => 'cde', 'CDE07G1996' => 'cde', 'CDE07G2078' => 'cde', 'CDE11G0611' => 'cde', 'Cfa001683' => 'cfa', 'Cfa001734' => 'cfa', 'Cfa001737' => 'cfa', 'Cfa003751' => 'cfa', 'Cfa012019' => 'cfa', 'Cfa017353' => 'cfa', 'Cfa017732' => 'cfa', 'Cfa022464' => 'cfa', 'Ciclev10012400m.g' => 'ccl', 'Ciclev10021242m.g' => 'ccl', 'Ciclev10021302m.g' => 'ccl', 'Ciclev10021463m.g' => 'ccl', 'Ciclev10032359m.g' => 'ccl', 'CiPaw.01G081000' => 'cil', 'CiPaw.01G262500' => 'cil', 'CiPaw.01G269800' => 'cil', 'CiPaw.02G168400' => 'cil', 'CiPaw.05G119500' => 'cil', 'CiPaw.11G147300' => 'cil', 'ClCG01G003630' => 'cla', 'ClCG05G000510' => 'cla', 'ClCG05G002300' => 'cla', 'ClCG08G007650' => 'cla', 'ClCG10G021250' => 'cla', 'COL.COLO4_06218' => 'col', 'COL.COLO4_12538' => 'col', 'COL.COLO4_14775' => 'col', 'COL.COLO4_23875' => 'col', 'Cpa.g.sc141.16' => 'cpa', 'Cpa.g.sc169.16' => 'cpa', 'Cpa.g.sc244.4' => 'cpa', 'Cpa.g.sc244.5' => 'cpa', 'Cpa.g.sc29.87' => 'cpa', 'Cpa.g.sc53.115' => 'cpa', 'Cre03.g207502' => 'cre', 'Cre06.g277000' => 'cre', 'Cre09.g394050' => 'cre', 'CsaV3_3G007680' => 'csa', 'CsaV3_3G009710' => 'csa', 'CsaV3_3G034790' => 'csa', 'CsaV3_5G003750' => 'csa', 'CsaV3_6G036620' => 'csa', 'CSS0002288' => 'camsi', 'CSS0011250' => 'camsi', 'CSS0021619' => 'camsi', 'CSS0046701' => 'camsi', 'DCAR_006420' => 'dca', 'DCAR_006865' => 'dca', 'DCAR_008558' => 'dca', 'DCAR_028754' => 'dca', 'DCAR_028755' => 'dca', 'Dinv31218' => 'din', 'Dinv32371' => 'din', 'Dinv34250' => 'din', 'Dinv37156' => 'din', 'Dinv43704' => 'din', 'Duzib093G1811' => 'dzi', 'Duzib106G1622' => 'dzi', 'Duzib114G0504' => 'dzi', 'Duzib128G0338' => 'dzi', 'Duzib128G1577' => 'dzi', 'Duzib133G0104' => 'dzi', 'Duzib133G1080' => 'dzi', 'Duzib138G0324' => 'dzi', 'Duzib138G0394' => 'dzi', 'Duzib205G0122' => 'dzi', 'Duzib268G1020' => 'dzi', 'Duzib268G1359' => 'dzi', 'ECA232G3929' => 'eca', 'ECA236G2210' => 'eca', 'ECA236G2287' => 'eca', 'ECA240G4568' => 'eca', 'ECA247G0894' => 'eca', 'EL10Ac1g00200' => 'bvu', 'EL10Ac1g00886' => 'bvu', 'EL10As1g23091' => 'bvu', 'EL10As1g23092' => 'bvu', 'Eucgr.A01284' => 'egr', 'Eucgr.A01285' => 'egr', 'Eucgr.D02456' => 'egr', 'Eucgr.E00018' => 'egr', 'Eucgr.E01439' => 'egr', 'Eucgr.G02859' => 'egr', 'FAN01G0168' => 'fan', 'FAN01G0453' => 'fan', 'FAN01G2761' => 'fan', 'FAN02G1239' => 'fan', 'FAN03G0645' => 'fan', 'FAN03G2707' => 'fan', 'FAN03G2978' => 'fan', 'FAN04G0227' => 'fan', 'FAN06G0091' => 'fan', 'FAN06G1418' => 'fan', 'FAN06G1512' => 'fan', 'FAN06G1986' => 'fan', 'FAN06G2905' => 'fan', 'FAN06G4325' => 'fan', 'FAN08G0033' => 'fan', 'FAN09G0642' => 'fan', 'FAN10G1763' => 'fan', 'FAN10G2026' => 'fan', 'FAN10G2513' => 'fan', 'FAN10G3402' => 'fan', 'FAN10G3564' => 'fan', 'FAN10G3987' => 'fan', 'FAN13G1490' => 'fan', 'FAN14G5857' => 'fan', 'FAN18G1188' => 'fan', 'FvH4_5g00750' => 'fve', 'FvH4_6g13410' => 'fve', 'FvH4_7g11740' => 'fve', 'FvH4_7g17410' => 'fve', 'FvH4_7g18860' => 'fve', 'Glyma.01G099100' => 'gma', 'Glyma.01G142300' => 'gma', 'Glyma.03G025500' => 'gma', 'Glyma.03G069700' => 'gma', 'Glyma.03G260000' => 'gma', 'Glyma.09G269800' => 'gma', 'Glyma.10G208700' => 'gma', 'Glyma.18G220400' => 'gma', 'Glyma.20G182000' => 'gma', 'Gohir.A01G221726' => 'ghi', 'Gohir.A07G134600' => 'ghi', 'Gohir.A07G146000' => 'ghi', 'Gohir.A08G173900' => 'ghi', 'Gohir.A09G194900' => 'ghi', 'Gohir.A10G204100' => 'ghi', 'Gohir.A11G080600' => 'ghi', 'Gohir.A11G327500' => 'ghi', 'Gohir.A12G101800' => 'ghi', 'Gohir.D01G211200' => 'ghi', 'Gohir.D07G139200' => 'ghi', 'Gohir.D07G152100' => 'ghi', 'Gohir.D08G192600' => 'ghi', 'Gohir.D09G189200' => 'ghi', 'Gohir.D10G212000' => 'ghi', 'Gohir.D11G085200' => 'ghi', 'Gohir.D11G346400' => 'ghi', 'Gohir.D12G104800' => 'ghi', 'Gorai.001G151300' => 'gra', 'Gorai.001G174100' => 'gra', 'Gorai.002G257000' => 'gra', 'Gorai.004G202600' => 'gra', 'Gorai.007G090900' => 'gra', 'Gorai.007G376700' => 'gra', 'Gorai.008G114100' => 'gra', 'Gorai.011G237900' => 'gra', 'GSVIVG01005450001' => 'vvi', 'GSVIVG01016232001' => 'vvi', 'GSVIVG01026157001' => 'vvi', 'GSVIVG01027419001' => 'vvi', 'GSVIVG01027631001' => 'vvi', 'GSVIVG01034143001' => 'vvi', 'HanXRQChr03g0093921' => 'han', 'HanXRQChr04g0120001' => 'han', 'HanXRQChr04g0122561' => 'han', 'HanXRQChr09g0246851' => 'han', 'HanXRQChr10g0293311' => 'han', 'HanXRQChr13g0425231' => 'han', 'HanXRQChr16g0532571' => 'han', 'Haze_09050' => 'cav', 'Haze_15715' => 'cav', 'Haze_15716' => 'cav', 'Haze_16803' => 'cav', 'Haze_16850' => 'cav', 'Hma1.2p1_0301F.1_g118655' => 'hma', 'Hma1.2p1_0309F.1_g120590' => 'hma', 'Hma1.2p1_0936F.1_g238900' => 'hma', 'Hma1.2p1_3552F.1_g336740' => 'hma', 'HPP92_003520' => 'vpl', 'HPP92_006628' => 'vpl', 'HPP92_006645' => 'vpl', 'HPP92_014669' => 'vpl', 'HPP92_015077' => 'vpl', 'Hund16742' => 'sun', 'Hund17022' => 'sun', 'Lalb_Chr02g0152131' => 'lal', 'Lalb_Chr05g0225371' => 'lal', 'Lalb_Chr07g0189841' => 'lal', 'Lalb_Chr07g0192961' => 'lal', 'Lalb_Chr12g0208221' => 'lal', 'Lalb_Chr13g0291211' => 'lal', 'Lalb_Chr13g0291781' => 'lal', 'Lalb_Chr18g0044651' => 'lal', 'Lalb_Chr21g0313731' => 'lal', 'Lj1g0022533' => 'lja', 'Lj2A18T50' => 'lonja', 'Lj2A92G93' => 'lonja', 'Lj3A965T73' => 'lonja', 'Lj3g0000673' => 'lja', 'Lj3g0002666' => 'lja', 'Lj4g0016985' => 'lja', 'Lj5g0003625' => 'lja', 'Lj7A529G36' => 'lonja', 'Lj9A569T49' => 'lonja', 'Lj9A604T63' => 'lonja', 'Lsat_1_v5_gn_3_132060' => 'lsa', 'Lsat_1_v5_gn_4_68941' => 'lsa', 'Lsat_1_v5_gn_5_95580' => 'lsa', 'Lsat_1_v5_gn_7_161' => 'lsa', 'Lsat_1_v5_gn_7_7041' => 'lsa', 'Lsat_1_v5_gn_9_33481' => 'lsa', 'Lsat_1_v5_gn_9_68260' => 'lsa', 'Manes.01G073100' => 'mes', 'Manes.01G266300' => 'mes', 'Manes.02G033300' => 'mes', 'Manes.05G017900' => 'mes', 'Manes.05G046100' => 'mes', 'Manes.08G080900' => 'mes', 'Manes.10G049400' => 'mes', 'Mapoly0009s0186' => 'mpo', 'Mapoly0036s0118' => 'mpo', 'Mapoly0101s0046' => 'mpo', 'MBI04_g30218_MAGBIO' => 'mbi', 'MBI04_g35564_MAGBIO' => 'mbi', 'MBI12_g34011_MAGBIO' => 'mbi', 'MBI14_g04655_MAGBIO' => 'mbi', 'MCO07G653' => 'mco', 'MCO10G173' => 'mco', 'MD01G1087100' => 'mdo', 'MD01G1104200' => 'mdo', 'MD02G1205100' => 'mdo', 'MD04G1079200' => 'mdo', 'MD04G1131400' => 'mdo', 'MD07G1121600' => 'mdo', 'MD07G1157300' => 'mdo', 'MD07G1171000' => 'mdo', 'MD12G1144500' => 'mdo', 'Medtr1g094610' => 'mtr', 'Medtr4g021795' => 'mtr', 'Medtr4g023760' => 'mtr', 'Medtr7g118050' => 'mtr', 'MELO3C005582.2' => 'cme', 'MELO3C005989.2' => 'cme', 'MELO3C006192.2' => 'cme', 'MELO3C009248.2' => 'cme', 'MELO3C019817.2' => 'cme', 'Migut.B01625' => 'egut', 'Migut.B01915' => 'egut', 'Migut.F01721' => 'egut', 'Migut.J00314' => 'egut', 'MSTRG.20742' => 'ama', 'MSTRG.8134' => 'ama', 'Nitab4.5_0000096g0010' => 'nta', 'Nitab4.5_0000202g0030' => 'nta', 'Nitab4.5_0000216g0370' => 'nta', 'Nitab4.5_0000457g0230' => 'nta', 'Nitab4.5_0001702g0170' => 'nta', 'Nitab4.5_0003607g0010' => 'nta', 'Nitab4.5_0004917g0020' => 'nta', 'Nitab4.5_0007059g0010' => 'nta', 'Nitab4.5_0007184g0010' => 'nta', 'Nitab4.5_0007346g0020' => 'nta', 'Nn1g00410' => 'nnu', 'Nn1g01252' => 'nnu', 'Nn2g11168' => 'nnu', 'Nn2g13403' => 'nnu', 'Nn2g13760' => 'nnu', 'Nn4g26380' => 'nnu', 'Oeu000806.2' => 'oeu', 'Oeu005788.1' => 'oeu', 'Oeu006900.3' => 'oeu', 'Oeu007797.1' => 'oeu', 'Oeu011932.1' => 'oeu', 'Oeu022739.1' => 'oeu', 'Oeu037918.1' => 'oeu', 'Oeu055490.2' => 'oeu', 'Os01g0844400' => 'osa', 'Os02g0819100' => 'osa', 'Os03g0804300' => 'osa', 'Os05g0458000' => 'osa', 'Os07g0467800' => 'osa', 'Os12g0602200' => 'osa', 'Peaxi162Scf00013g03444' => 'pax', 'Peaxi162Scf00094g01120' => 'pax', 'Peaxi162Scf00191g01211' => 'pax', 'Peaxi162Scf00238g01110' => 'pax', 'Peaxi162Scf00330g00719' => 'pax', 'Peaxi162Scf00627g00018' => 'pax', 'PGR031G2686' => 'pgr', 'PGR042G0809' => 'pgr', 'PGR142G0193' => 'pgr', 'PGSC0003DMG400011066' => 'stu', 'PGSC0003DMG400012041' => 'stu', 'PGSC0003DMG400013678' => 'stu', 'PGSC0003DMG400023477' => 'stu', 'PGSC0003DMG400025956' => 'stu', 'PGSC0003DMG401019151' => 'stu', 'Phvul.006G116400' => 'pvu', 'Phvul.007G097300' => 'pvu', 'Phvul.010G015000' => 'pvu', 'Phvul.010G083900' => 'pvu', 'Potri.001G117100' => 'ptr', 'Potri.002G147300' => 'ptr', 'Potri.003G115600' => 'ptr', 'Potri.006G087400' => 'ptr', 'Potri.010G226100' => 'ptr', 'Potri.014G069200' => 'ptr', 'Potri.014G104000' => 'ptr', 'Potri.016G100200' => 'ptr', 'Pp3c10_20450' => 'ppa', 'Pp3c1_42400' => 'ppa', 'Pp3c3_24390' => 'ppa', 'Pp3c3_2860' => 'ppa', 'PRCOL_00003193' => 'pco', 'Prupe.2G144500' => 'ppe', 'Prupe.2G195700' => 'ppe', 'Prupe.2G209800' => 'ppe', 'Prupe.5G080000' => 'ppe', 'Prupe.6G257900' => 'ppe', 'Psat3g001160' => 'psa', 'Psat6g181880' => 'psa', 'Psat7g233720' => 'psa', 'PSO063G7587' => 'pso', 'PSO339G2145' => 'pso', 'PSO339G3369' => 'pso', 'PSO478G2747' => 'pso', 'PSO513G0140' => 'pso', 'PSO782G1614' => 'pso', 'PSO782G4889' => 'pso', 'PSO782G5485' => 'pso', 'PSO801G0241' => 'pso', 'QL07p048854' => 'qlo', 'QL08p046745' => 'qlo', 'QL08p052606' => 'qlo', 'QL08p053414' => 'qlo', 'QL08p054868' => 'qlo', 'RcHm_v2.0_Chr1g0350251' => 'rch', 'RcHm_v2.0_Chr1g0360851' => 'rch', 'RcHm_v2.0_Chr1g0362791' => 'rch', 'RcHm_v2.0_Chr3g0466281' => 'rch', 'RcHm_v2.0_Chr7g0201481' => 'rch', 'Rhsim01G0148600' => 'rsi', 'Rhsim05G0194400' => 'rsi', 'Rhsim07G0000700' => 'rsi', 'Rhsim07G0000800' => 'rsi', 'Rhsim07G0027900' => 'rsi', 'Rhsim09G0149500' => 'rsi', 'RhsimUnG0186900' => 'rsi', 'Sabra01G0089900' => 'sbr', 'Sabra02G0114700' => 'sbr', 'Sabra02G0116300' => 'sbr', 'Sabra03G0080100' => 'sbr', 'Sabra08G0024300' => 'sbr', 'Sabra10G0174300' => 'sbr', 'Sabra14G0048900' => 'sbr', 'Sabra14G0076500' => 'sbr', 'SalBow5G2513' => 'sbo', 'Sc01g0002300' => 'sci', 'Sc01g0004450' => 'sci', 'Sc06g0001680' => 'sci', 'Sc23g0003580' => 'sci', 'Sed0000913' => 'sed', 'Sed0001655' => 'sed', 'Sed0007745' => 'sed', 'Sed0010951' => 'sed', 'Sed0017599' => 'sed', 'Sed0021405' => 'sed', 'Sed0022810' => 'sed', 'SEGI_07099' => 'sgi', 'SEGI_11931' => 'sgi', 'SEGI_13187' => 'sgi', 'SEGI_29958' => 'sgi', 'SEGI_36351' => 'sgi', 'SGA_v2.0_scaffold126G33770' => 'sas', 'SGA_v2.0_scaffold153G37003' => 'sas', 'SGA_v2.0_scaffold2G01359' => 'sas', 'SGA_v2.0_scaffold5G03064' => 'sas', 'SGA_v2.0_scaffold95G28903' => 'sas', 'SHI12701' => 'shi', 'SHI26410' => 'shi', 'SHI38997' => 'shi', 'SHI53759' => 'shi', 'SHI53886' => 'shi', 'SHI54714' => 'shi', 'SMO011G0041' => 'smo', 'SMO146G0251' => 'smo', 'SMO160G0004' => 'smo', 'SMO174G0057' => 'smo', 'SMO244G0089' => 'smo', 'SMO296G0011' => 'smo', 'Solyc01g091280.3' => 'sly', 'Solyc05g047610.3' => 'sly', 'Solyc05g047640.3' => 'sly', 'Solyc05g055630.3' => 'sly', 'Solyc10g018160.2' => 'sly', 'Solyc10g084820.2' => 'sly', 'Solyc10g086565.2' => 'sly', 'Sopen01g037030' => 'spe', 'Sopen05g027920' => 'spe', 'Sopen05g034070' => 'spe', 'Sopen10g007260' => 'spe', 'Sopen10g034260' => 'spe', 'Sopen10g035950' => 'spe', 'Sp3g07710' => 'spa', 'Sp4g27420' => 'spa', 'Sp5g02450' => 'spa', 'Sp6g01280' => 'spa', 'Sp6g38480' => 'spa', 'Sp7g20780' => 'spa', 'TAR374G1413' => 'tar', 'TAR623G1777' => 'tar', 'TAR629G2370' => 'tar', 'TAR633G1759' => 'tar', 'TAR636G3387' => 'tar', 'THA.LOC104802447' => 'tha', 'THA.LOC104813916' => 'tha', 'THA.LOC104816423' => 'tha', 'THA.LOC104817246' => 'tha', 'THA.LOC104825895' => 'tha', 'Thecc.01G335200' => 'tca', 'Thecc.01G377400' => 'tca', 'Thecc.03G262200' => 'tca', 'Thecc.05G036800' => 'tca', 'Thecc.10G080500' => 'tca', 'Thecc.10G080800' => 'tca', 'Thhalv10001560m.g' => 'esa', 'Thhalv10006120m.g' => 'esa', 'Thhalv10014375m.g' => 'esa', 'Thhalv10021264m.g' => 'esa', 'Thhalv10028856m.g' => 'esa', 'TPR.G1914' => 'tpr', 'TPR.G4757' => 'tpr', 'TPR.G5595' => 'tpr', 'TWI14G0952' => 'twi', 'TWI14G1307' => 'twi', 'TWI38G2143' => 'twi', 'TWI59G0826' => 'twi', 'TWI77G0527' => 'twi', 'TWI81G0150' => 'twi', 'unitig_21.g21018' => 'ugi', 'unitig_26.g9725' => 'ugi', 'unitig_744.g24653' => 'ugi', 'unitig_749.g13778' => 'ugi', 'unitig_899.g15035' => 'ugi', 'vmacro04296' => 'vma', 'vmacro04852' => 'vma', 'vmacro13404' => 'vma', 'vmacro20169' => 'vma', 'vmacro21014' => 'vma', 'VMungo0331G0237' => 'vmu', 'VMungo0331G0706' => 'vmu', 'VMungo0331G1361' => 'vmu', 'VMungo0331G1489' => 'vmu', 'VMungo0540G1037' => 'vmu', 'VMungo0720G2487' => 'vmu', 'VMungo0720G2721' => 'vmu', 'Zm00001eb086860' => 'zma', 'Zm00001eb104760' => 'zma', 'Zm00001eb148220' => 'zma', 'Zm00001eb259030' => 'zma', 'Zm00001eb289590' => 'zma', 'Zm00001eb420150' => 'zma' ), 'gf_id' => 'HOM05D000968', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000968' ), 'data_identifier' => 'HOM05D000968', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000968', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p31690' => 'bna', 'A03p36040' => 'bna', 'A03p53730' => 'bna', 'A04p01410' => 'bna', 'A05p05420' => 'bna', 'A05p39630' => 'bna', 'A05p39640' => 'bna', 'A09p00970' => 'bna', 'A09p53060' => 'bna', 'A10p31890' => 'bna', 'Aa31LG10G15040' => 'aar', 'Aa31LG1G21090' => 'aar', 'Aa31LG1G26900' => 'aar', 'Aa31LG3G1820' => 'aar', 'Aa31LG5G1100' => 'aar', 'Aa31LG6G4740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2265' => 'aag', 'Actinidia07998' => 'ach', 'Actinidia11266' => 'ach', 'Actinidia12682' => 'ach', 'Actinidia26479' => 'ach', 'Actinidia31406' => 'ach', 'Actinidia32437' => 'ach', 'Actinidia38862' => 'ach', 'Ah.05g174230' => 'amhyb', 'Ah.05g179070' => 'amhyb', 'Ah.05g179090' => 'amhyb', 'Ah.12g059950' => 'amhyb', 'AL3G20480' => 'aly', 'AL4G44520' => 'aly', 'AL5G43110' => 'aly', 'AL6G13890' => 'aly', 'AL6G52620' => 'aly', 'AL7G30830' => 'aly', 'Aqoxy1G00899' => 'aox', 'Aqoxy5G04333' => 'aox', 'Aqoxy7G00641' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3IZ0NN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4EF6AW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W9P8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79GA3M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C43NQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFCU6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G95YVJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCHK29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LU1UG8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX91RN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGB4B1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8DA0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9H7JI' => 'arhy', 'AT3G09320' => 'ath', 'AT3G60800' => 'ath', 'AT4G00840' => 'ath', 'AT4G22750' => 'ath', 'AT5G04270' => 'ath', 'ATR0090G003' => 'atr', 'ATR0559G349' => 'atr', 'ATR0680G261' => 'atr', 'ATR0810G048' => 'atr', 'Atru.chr12.831' => 'acertr', 'Atru.chr5.303' => 'acertr', 'Atru.chr5.748' => 'acertr', 'Atru.chr8.1999' => 'acertr', 'Atru.chr9.1436' => 'acertr', 'AUR62004211' => 'cqu', 'AUR62004548' => 'cqu', 'AUR62013637' => 'cqu', 'AUR62022662' => 'cqu', 'AUR62025777' => 'cqu', 'AUR62042386' => 'cqu', 'BcaB01g02310' => 'bca', 'BcaB01g06062' => 'bca', 'BcaB02g08975' => 'bca', 'BcaB02g08980' => 'bca', 'BcaC01g04228' => 'bca', 'BcaC01g06830' => 'bca', 'BcaC02g10186' => 'bca', 'BcaC02g12214' => 'bca', 'BcaC04g24101' => 'bca', 'BcaC05g29520' => 'bca', 'BcaC05g29661' => 'bca', 'BcaC06g32130' => 'bca', 'BcaC06g32131' => 'bca', 'BcaC07g40601' => 'bca', 'BcaC07g42641' => 'bca', 'BcaNung01038' => 'bca', 'BcaNung01676' => 'bca', 'BcaNung02480' => 'bca', 'BcaNung07376' => 'bca', 'BolC3t16146H' => 'bol', 'BolC3t16637H' => 'bol', 'BolC4t22257H' => 'bol', 'BolC4t24728H' => 'bol', 'BolC5t34517H' => 'bol', 'BolC7t45703H' => 'bol', 'BolC8t51166H' => 'bol', 'BolC9t53038H' => 'bol', 'BolC9t60000H' => 'bol', 'BraA01t01345Z' => 'bra', 'BraA01t01346Z' => 'bra', 'BraA01t01348Z' => 'bra', 'BraA03t12347Z' => 'bra', 'BraA03t12775Z' => 'bra', 'BraA03t14439Z' => 'bra', 'BraA04t15860Z' => 'bra', 'BraA05t19511Z' => 'bra', 'BraA05t22746Z' => 'bra', 'BraA09t35767Z' => 'bra', 'BraA09t40732Z' => 'bra', 'BraA10t45233Z' => 'bra', 'C03p38720' => 'bna', 'C03p43680' => 'bna', 'C04p06350' => 'bna', 'C04p31800' => 'bna', 'C05p58680' => 'bna', 'C07p52110' => 'bna', 'C08p35760' => 'bna', 'C09p01050' => 'bna', 'C09p72600' => 'bna', 'CAN.G106.2' => 'can', 'CAN.G1482.1' => 'can', 'CAN.G324.12' => 'can', 'CAN.G388.20' => 'can', 'CAN.G412.7' => 'can', 'CAN.G694.32' => 'can', 'CAN.G92.12' => 'can', 'CANSAT11G2353' => 'cansat', 'CANSAT21G1398' => 'cansat', 'CANSAT56G2456' => 'cansat', 'CANSAT56G3031' => 'cansat', 'CANSAT56G4539' => 'cansat', 'CARHR083680' => 'chi', 'CARHR171190' => 'chi', 'CARHR209010' => 'chi', 'CARHR229680' => 'chi', 'CARHR249490' => 'chi', 'Carub.0003s0844' => 'cru', 'Carub.0005s2755' => 'cru', 'Carub.0006s0322' => 'cru', 'Carub.0006s3586' => 'cru', 'Carub.0007s1855' => 'cru', 'Ca_07808_v3' => 'car', 'Ca_09535_v3' => 'car', 'Ca_10548_v3' => 'car', 'Ca_19913_v3' => 'car', 'Ca_19916_v3' => 'car', 'Ca_19975_v3' => 'car', 'CBR_g22876' => 'cbr', 'CBR_g22879' => 'cbr', 'CBR_g38491' => 'cbr', 'CBR_g54185' => 'cbr', 'CBR_g54190' => 'cbr', 'Cc02_g11020' => 'ccan', 'Cc02_g23920' => 'ccan', 'Cc02_g39860' => 'ccan', 'Cc02_g39870' => 'ccan', 'Cc03_g06760' => 'ccan', 'Cc06_g02450' => 'ccan', 'Cc09_g09450' => 'ccan', 'CDE02G1959' => 'cde', 'CDE04G0600' => 'cde', 'CDE07G1996' => 'cde', 'CDE07G2078' => 'cde', 'CDE11G0611' => 'cde', 'Cfa001683' => 'cfa', 'Cfa001734' => 'cfa', 'Cfa001737' => 'cfa', 'Cfa003751' => 'cfa', 'Cfa012019' => 'cfa', 'Cfa017353' => 'cfa', 'Cfa017732' => 'cfa', 'Cfa022464' => 'cfa', 'Ciclev10012400m.g' => 'ccl', 'Ciclev10021242m.g' => 'ccl', 'Ciclev10021302m.g' => 'ccl', 'Ciclev10021463m.g' => 'ccl', 'Ciclev10032359m.g' => 'ccl', 'CiPaw.01G081000' => 'cil', 'CiPaw.01G262500' => 'cil', 'CiPaw.01G269800' => 'cil', 'CiPaw.02G168400' => 'cil', 'CiPaw.05G119500' => 'cil', 'CiPaw.11G147300' => 'cil', 'ClCG01G003630' => 'cla', 'ClCG05G000510' => 'cla', 'ClCG05G002300' => 'cla', 'ClCG08G007650' => 'cla', 'ClCG10G021250' => 'cla', 'COL.COLO4_06218' => 'col', 'COL.COLO4_12538' => 'col', 'COL.COLO4_14775' => 'col', 'COL.COLO4_23875' => 'col', 'Cpa.g.sc141.16' => 'cpa', 'Cpa.g.sc169.16' => 'cpa', 'Cpa.g.sc244.4' => 'cpa', 'Cpa.g.sc244.5' => 'cpa', 'Cpa.g.sc29.87' => 'cpa', 'Cpa.g.sc53.115' => 'cpa', 'Cre03.g207502' => 'cre', 'Cre06.g277000' => 'cre', 'Cre09.g394050' => 'cre', 'CsaV3_3G007680' => 'csa', 'CsaV3_3G009710' => 'csa', 'CsaV3_3G034790' => 'csa', 'CsaV3_5G003750' => 'csa', 'CsaV3_6G036620' => 'csa', 'CSS0002288' => 'camsi', 'CSS0011250' => 'camsi', 'CSS0021619' => 'camsi', 'CSS0046701' => 'camsi', 'DCAR_006420' => 'dca', 'DCAR_006865' => 'dca', 'DCAR_008558' => 'dca', 'DCAR_028754' => 'dca', 'DCAR_028755' => 'dca', 'Dinv31218' => 'din', 'Dinv32371' => 'din', 'Dinv34250' => 'din', 'Dinv37156' => 'din', 'Dinv43704' => 'din', 'Duzib093G1811' => 'dzi', 'Duzib106G1622' => 'dzi', 'Duzib114G0504' => 'dzi', 'Duzib128G0338' => 'dzi', 'Duzib128G1577' => 'dzi', 'Duzib133G0104' => 'dzi', 'Duzib133G1080' => 'dzi', 'Duzib138G0324' => 'dzi', 'Duzib138G0394' => 'dzi', 'Duzib205G0122' => 'dzi', 'Duzib268G1020' => 'dzi', 'Duzib268G1359' => 'dzi', 'ECA232G3929' => 'eca', 'ECA236G2210' => 'eca', 'ECA236G2287' => 'eca', 'ECA240G4568' => 'eca', 'ECA247G0894' => 'eca', 'EL10Ac1g00200' => 'bvu', 'EL10Ac1g00886' => 'bvu', 'EL10As1g23091' => 'bvu', 'EL10As1g23092' => 'bvu', 'Eucgr.A01284' => 'egr', 'Eucgr.A01285' => 'egr', 'Eucgr.D02456' => 'egr', 'Eucgr.E00018' => 'egr', 'Eucgr.E01439' => 'egr', 'Eucgr.G02859' => 'egr', 'FAN01G0168' => 'fan', 'FAN01G0453' => 'fan', 'FAN01G2761' => 'fan', 'FAN02G1239' => 'fan', 'FAN03G0645' => 'fan', 'FAN03G2707' => 'fan', 'FAN03G2978' => 'fan', 'FAN04G0227' => 'fan', 'FAN06G0091' => 'fan', 'FAN06G1418' => 'fan', 'FAN06G1512' => 'fan', 'FAN06G1986' => 'fan', 'FAN06G2905' => 'fan', 'FAN06G4325' => 'fan', 'FAN08G0033' => 'fan', 'FAN09G0642' => 'fan', 'FAN10G1763' => 'fan', 'FAN10G2026' => 'fan', 'FAN10G2513' => 'fan', 'FAN10G3402' => 'fan', 'FAN10G3564' => 'fan', 'FAN10G3987' => 'fan', 'FAN13G1490' => 'fan', 'FAN14G5857' => 'fan', 'FAN18G1188' => 'fan', 'FvH4_5g00750' => 'fve', 'FvH4_6g13410' => 'fve', 'FvH4_7g11740' => 'fve', 'FvH4_7g17410' => 'fve', 'FvH4_7g18860' => 'fve', 'Glyma.01G099100' => 'gma', 'Glyma.01G142300' => 'gma', 'Glyma.03G025500' => 'gma', 'Glyma.03G069700' => 'gma', 'Glyma.03G260000' => 'gma', 'Glyma.09G269800' => 'gma', 'Glyma.10G208700' => 'gma', 'Glyma.18G220400' => 'gma', 'Glyma.20G182000' => 'gma', 'Gohir.A01G221726' => 'ghi', 'Gohir.A07G134600' => 'ghi', 'Gohir.A07G146000' => 'ghi', 'Gohir.A08G173900' => 'ghi', 'Gohir.A09G194900' => 'ghi', 'Gohir.A10G204100' => 'ghi', 'Gohir.A11G080600' => 'ghi', 'Gohir.A11G327500' => 'ghi', 'Gohir.A12G101800' => 'ghi', 'Gohir.D01G211200' => 'ghi', 'Gohir.D07G139200' => 'ghi', 'Gohir.D07G152100' => 'ghi', 'Gohir.D08G192600' => 'ghi', 'Gohir.D09G189200' => 'ghi', 'Gohir.D10G212000' => 'ghi', 'Gohir.D11G085200' => 'ghi', 'Gohir.D11G346400' => 'ghi', 'Gohir.D12G104800' => 'ghi', 'Gorai.001G151300' => 'gra', 'Gorai.001G174100' => 'gra', 'Gorai.002G257000' => 'gra', 'Gorai.004G202600' => 'gra', 'Gorai.007G090900' => 'gra', 'Gorai.007G376700' => 'gra', 'Gorai.008G114100' => 'gra', 'Gorai.011G237900' => 'gra', 'GSVIVG01005450001' => 'vvi', 'GSVIVG01016232001' => 'vvi', 'GSVIVG01026157001' => 'vvi', 'GSVIVG01027419001' => 'vvi', 'GSVIVG01027631001' => 'vvi', 'GSVIVG01034143001' => 'vvi', 'HanXRQChr03g0093921' => 'han', 'HanXRQChr04g0120001' => 'han', 'HanXRQChr04g0122561' => 'han', 'HanXRQChr09g0246851' => 'han', 'HanXRQChr10g0293311' => 'han', 'HanXRQChr13g0425231' => 'han', 'HanXRQChr16g0532571' => 'han', 'Haze_09050' => 'cav', 'Haze_15715' => 'cav', 'Haze_15716' => 'cav', 'Haze_16803' => 'cav', 'Haze_16850' => 'cav', 'Hma1.2p1_0301F.1_g118655' => 'hma', 'Hma1.2p1_0309F.1_g120590' => 'hma', 'Hma1.2p1_0936F.1_g238900' => 'hma', 'Hma1.2p1_3552F.1_g336740' => 'hma', 'HPP92_003520' => 'vpl', 'HPP92_006628' => 'vpl', 'HPP92_006645' => 'vpl', 'HPP92_014669' => 'vpl', 'HPP92_015077' => 'vpl', 'Hund16742' => 'sun', 'Hund17022' => 'sun', 'Lalb_Chr02g0152131' => 'lal', 'Lalb_Chr05g0225371' => 'lal', 'Lalb_Chr07g0189841' => 'lal', 'Lalb_Chr07g0192961' => 'lal', 'Lalb_Chr12g0208221' => 'lal', 'Lalb_Chr13g0291211' => 'lal', 'Lalb_Chr13g0291781' => 'lal', 'Lalb_Chr18g0044651' => 'lal', 'Lalb_Chr21g0313731' => 'lal', 'Lj1g0022533' => 'lja', 'Lj2A18T50' => 'lonja', 'Lj2A92G93' => 'lonja', 'Lj3A965T73' => 'lonja', 'Lj3g0000673' => 'lja', 'Lj3g0002666' => 'lja', 'Lj4g0016985' => 'lja', 'Lj5g0003625' => 'lja', 'Lj7A529G36' => 'lonja', 'Lj9A569T49' => 'lonja', 'Lj9A604T63' => 'lonja', 'Lsat_1_v5_gn_3_132060' => 'lsa', 'Lsat_1_v5_gn_4_68941' => 'lsa', 'Lsat_1_v5_gn_5_95580' => 'lsa', 'Lsat_1_v5_gn_7_161' => 'lsa', 'Lsat_1_v5_gn_7_7041' => 'lsa', 'Lsat_1_v5_gn_9_33481' => 'lsa', 'Lsat_1_v5_gn_9_68260' => 'lsa', 'Manes.01G073100' => 'mes', 'Manes.01G266300' => 'mes', 'Manes.02G033300' => 'mes', 'Manes.05G017900' => 'mes', 'Manes.05G046100' => 'mes', 'Manes.08G080900' => 'mes', 'Manes.10G049400' => 'mes', 'Mapoly0009s0186' => 'mpo', 'Mapoly0036s0118' => 'mpo', 'Mapoly0101s0046' => 'mpo', 'MBI04_g30218_MAGBIO' => 'mbi', 'MBI04_g35564_MAGBIO' => 'mbi', 'MBI12_g34011_MAGBIO' => 'mbi', 'MBI14_g04655_MAGBIO' => 'mbi', 'MCO07G653' => 'mco', 'MCO10G173' => 'mco', 'MD01G1087100' => 'mdo', 'MD01G1104200' => 'mdo', 'MD02G1205100' => 'mdo', 'MD04G1079200' => 'mdo', 'MD04G1131400' => 'mdo', 'MD07G1121600' => 'mdo', 'MD07G1157300' => 'mdo', 'MD07G1171000' => 'mdo', 'MD12G1144500' => 'mdo', 'Medtr1g094610' => 'mtr', 'Medtr4g021795' => 'mtr', 'Medtr4g023760' => 'mtr', 'Medtr7g118050' => 'mtr', 'MELO3C005582.2' => 'cme', 'MELO3C005989.2' => 'cme', 'MELO3C006192.2' => 'cme', 'MELO3C009248.2' => 'cme', 'MELO3C019817.2' => 'cme', 'Migut.B01625' => 'egut', 'Migut.B01915' => 'egut', 'Migut.F01721' => 'egut', 'Migut.J00314' => 'egut', 'MSTRG.20742' => 'ama', 'MSTRG.8134' => 'ama', 'Nitab4.5_0000096g0010' => 'nta', 'Nitab4.5_0000202g0030' => 'nta', 'Nitab4.5_0000216g0370' => 'nta', 'Nitab4.5_0000457g0230' => 'nta', 'Nitab4.5_0001702g0170' => 'nta', 'Nitab4.5_0003607g0010' => 'nta', 'Nitab4.5_0004917g0020' => 'nta', 'Nitab4.5_0007059g0010' => 'nta', 'Nitab4.5_0007184g0010' => 'nta', 'Nitab4.5_0007346g0020' => 'nta', 'Nn1g00410' => 'nnu', 'Nn1g01252' => 'nnu', 'Nn2g11168' => 'nnu', 'Nn2g13403' => 'nnu', 'Nn2g13760' => 'nnu', 'Nn4g26380' => 'nnu', 'Oeu000806.2' => 'oeu', 'Oeu005788.1' => 'oeu', 'Oeu006900.3' => 'oeu', 'Oeu007797.1' => 'oeu', 'Oeu011932.1' => 'oeu', 'Oeu022739.1' => 'oeu', 'Oeu037918.1' => 'oeu', 'Oeu055490.2' => 'oeu', 'Os01g0844400' => 'osa', 'Os02g0819100' => 'osa', 'Os03g0804300' => 'osa', 'Os05g0458000' => 'osa', 'Os07g0467800' => 'osa', 'Os12g0602200' => 'osa', 'Peaxi162Scf00013g03444' => 'pax', 'Peaxi162Scf00094g01120' => 'pax', 'Peaxi162Scf00191g01211' => 'pax', 'Peaxi162Scf00238g01110' => 'pax', 'Peaxi162Scf00330g00719' => 'pax', 'Peaxi162Scf00627g00018' => 'pax', 'PGR031G2686' => 'pgr', 'PGR042G0809' => 'pgr', 'PGR142G0193' => 'pgr', 'PGSC0003DMG400011066' => 'stu', 'PGSC0003DMG400012041' => 'stu', 'PGSC0003DMG400013678' => 'stu', 'PGSC0003DMG400023477' => 'stu', 'PGSC0003DMG400025956' => 'stu', 'PGSC0003DMG401019151' => 'stu', 'Phvul.006G116400' => 'pvu', 'Phvul.007G097300' => 'pvu', 'Phvul.010G015000' => 'pvu', 'Phvul.010G083900' => 'pvu', 'Potri.001G117100' => 'ptr', 'Potri.002G147300' => 'ptr', 'Potri.003G115600' => 'ptr', 'Potri.006G087400' => 'ptr', 'Potri.010G226100' => 'ptr', 'Potri.014G069200' => 'ptr', 'Potri.014G104000' => 'ptr', 'Potri.016G100200' => 'ptr', 'Pp3c10_20450' => 'ppa', 'Pp3c1_42400' => 'ppa', 'Pp3c3_24390' => 'ppa', 'Pp3c3_2860' => 'ppa', 'PRCOL_00003193' => 'pco', 'Prupe.2G144500' => 'ppe', 'Prupe.2G195700' => 'ppe', 'Prupe.2G209800' => 'ppe', 'Prupe.5G080000' => 'ppe', 'Prupe.6G257900' => 'ppe', 'Psat3g001160' => 'psa', 'Psat6g181880' => 'psa', 'Psat7g233720' => 'psa', 'PSO063G7587' => 'pso', 'PSO339G2145' => 'pso', 'PSO339G3369' => 'pso', 'PSO478G2747' => 'pso', 'PSO513G0140' => 'pso', 'PSO782G1614' => 'pso', 'PSO782G4889' => 'pso', 'PSO782G5485' => 'pso', 'PSO801G0241' => 'pso', 'QL07p048854' => 'qlo', 'QL08p046745' => 'qlo', 'QL08p052606' => 'qlo', 'QL08p053414' => 'qlo', 'QL08p054868' => 'qlo', 'RcHm_v2.0_Chr1g0350251' => 'rch', 'RcHm_v2.0_Chr1g0360851' => 'rch', 'RcHm_v2.0_Chr1g0362791' => 'rch', 'RcHm_v2.0_Chr3g0466281' => 'rch', 'RcHm_v2.0_Chr7g0201481' => 'rch', 'Rhsim01G0148600' => 'rsi', 'Rhsim05G0194400' => 'rsi', 'Rhsim07G0000700' => 'rsi', 'Rhsim07G0000800' => 'rsi', 'Rhsim07G0027900' => 'rsi', 'Rhsim09G0149500' => 'rsi', 'RhsimUnG0186900' => 'rsi', 'Sabra01G0089900' => 'sbr', 'Sabra02G0114700' => 'sbr', 'Sabra02G0116300' => 'sbr', 'Sabra03G0080100' => 'sbr', 'Sabra08G0024300' => 'sbr', 'Sabra10G0174300' => 'sbr', 'Sabra14G0048900' => 'sbr', 'Sabra14G0076500' => 'sbr', 'SalBow5G2513' => 'sbo', 'Sc01g0002300' => 'sci', 'Sc01g0004450' => 'sci', 'Sc06g0001680' => 'sci', 'Sc23g0003580' => 'sci', 'Sed0000913' => 'sed', 'Sed0001655' => 'sed', 'Sed0007745' => 'sed', 'Sed0010951' => 'sed', 'Sed0017599' => 'sed', 'Sed0021405' => 'sed', 'Sed0022810' => 'sed', 'SEGI_07099' => 'sgi', 'SEGI_11931' => 'sgi', 'SEGI_13187' => 'sgi', 'SEGI_29958' => 'sgi', 'SEGI_36351' => 'sgi', 'SGA_v2.0_scaffold126G33770' => 'sas', 'SGA_v2.0_scaffold153G37003' => 'sas', 'SGA_v2.0_scaffold2G01359' => 'sas', 'SGA_v2.0_scaffold5G03064' => 'sas', 'SGA_v2.0_scaffold95G28903' => 'sas', 'SHI12701' => 'shi', 'SHI26410' => 'shi', 'SHI38997' => 'shi', 'SHI53759' => 'shi', 'SHI53886' => 'shi', 'SHI54714' => 'shi', 'SMO011G0041' => 'smo', 'SMO146G0251' => 'smo', 'SMO160G0004' => 'smo', 'SMO174G0057' => 'smo', 'SMO244G0089' => 'smo', 'SMO296G0011' => 'smo', 'Solyc01g091280.3' => 'sly', 'Solyc05g047610.3' => 'sly', 'Solyc05g047640.3' => 'sly', 'Solyc05g055630.3' => 'sly', 'Solyc10g018160.2' => 'sly', 'Solyc10g084820.2' => 'sly', 'Solyc10g086565.2' => 'sly', 'Sopen01g037030' => 'spe', 'Sopen05g027920' => 'spe', 'Sopen05g034070' => 'spe', 'Sopen10g007260' => 'spe', 'Sopen10g034260' => 'spe', 'Sopen10g035950' => 'spe', 'Sp3g07710' => 'spa', 'Sp4g27420' => 'spa', 'Sp5g02450' => 'spa', 'Sp6g01280' => 'spa', 'Sp6g38480' => 'spa', 'Sp7g20780' => 'spa', 'TAR374G1413' => 'tar', 'TAR623G1777' => 'tar', 'TAR629G2370' => 'tar', 'TAR633G1759' => 'tar', 'TAR636G3387' => 'tar', 'THA.LOC104802447' => 'tha', 'THA.LOC104813916' => 'tha', 'THA.LOC104816423' => 'tha', 'THA.LOC104817246' => 'tha', 'THA.LOC104825895' => 'tha', 'Thecc.01G335200' => 'tca', 'Thecc.01G377400' => 'tca', 'Thecc.03G262200' => 'tca', 'Thecc.05G036800' => 'tca', 'Thecc.10G080500' => 'tca', 'Thecc.10G080800' => 'tca', 'Thhalv10001560m.g' => 'esa', 'Thhalv10006120m.g' => 'esa', 'Thhalv10014375m.g' => 'esa', 'Thhalv10021264m.g' => 'esa', 'Thhalv10028856m.g' => 'esa', 'TPR.G1914' => 'tpr', 'TPR.G4757' => 'tpr', 'TPR.G5595' => 'tpr', 'TWI14G0952' => 'twi', 'TWI14G1307' => 'twi', 'TWI38G2143' => 'twi', 'TWI59G0826' => 'twi', 'TWI77G0527' => 'twi', 'TWI81G0150' => 'twi', 'unitig_21.g21018' => 'ugi', 'unitig_26.g9725' => 'ugi', 'unitig_744.g24653' => 'ugi', 'unitig_749.g13778' => 'ugi', 'unitig_899.g15035' => 'ugi', 'vmacro04296' => 'vma', 'vmacro04852' => 'vma', 'vmacro13404' => 'vma', 'vmacro20169' => 'vma', 'vmacro21014' => 'vma', 'VMungo0331G0237' => 'vmu', 'VMungo0331G0706' => 'vmu', 'VMungo0331G1361' => 'vmu', 'VMungo0331G1489' => 'vmu', 'VMungo0540G1037' => 'vmu', 'VMungo0720G2487' => 'vmu', 'VMungo0720G2721' => 'vmu', 'Zm00001eb086860' => 'zma', 'Zm00001eb104760' => 'zma', 'Zm00001eb148220' => 'zma', 'Zm00001eb259030' => 'zma', 'Zm00001eb289590' => 'zma', 'Zm00001eb420150' => 'zma' ) $gf_id = 'HOM05D000968' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000968' ) $data_identifier = 'HOM05D000968' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 19, 'bol' => (int) 9, 'bra' => (int) 12, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 5, 'ccan' => (int) 7, 'cde' => (int) 5, 'cfa' => (int) 8, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 4, 'dca' => (int) 5, 'din' => (int) 5, 'dzi' => (int) 12, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 25, 'fve' => (int) 5, 'gma' => (int) 9, 'ghi' => (int) 18, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 7, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 5, 'sun' => (int) 2, 'lal' => (int) 9, 'lja' => (int) 5, 'lonja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 9, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 2, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 3, 'stu' => (int) 6, 'pvu' => (int) 4, 'ptr' => (int) 8, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 3, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 1, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 5, 'sas' => (int) 5, 'shi' => (int) 6, 'smo' => (int) 6, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 3, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420150' $species_info = array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ) $local_species = 'lal' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000968', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p31690' => 'bna', 'A03p36040' => 'bna', 'A03p53730' => 'bna', 'A04p01410' => 'bna', 'A05p05420' => 'bna', 'A05p39630' => 'bna', 'A05p39640' => 'bna', 'A09p00970' => 'bna', 'A09p53060' => 'bna', 'A10p31890' => 'bna', 'Aa31LG10G15040' => 'aar', 'Aa31LG1G21090' => 'aar', 'Aa31LG1G26900' => 'aar', 'Aa31LG3G1820' => 'aar', 'Aa31LG5G1100' => 'aar', 'Aa31LG6G4740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2265' => 'aag', 'Actinidia07998' => 'ach', 'Actinidia11266' => 'ach', 'Actinidia12682' => 'ach', 'Actinidia26479' => 'ach', 'Actinidia31406' => 'ach', 'Actinidia32437' => 'ach', 'Actinidia38862' => 'ach', 'Ah.05g174230' => 'amhyb', 'Ah.05g179070' => 'amhyb', 'Ah.05g179090' => 'amhyb', 'Ah.12g059950' => 'amhyb', 'AL3G20480' => 'aly', 'AL4G44520' => 'aly', 'AL5G43110' => 'aly', 'AL6G13890' => 'aly', 'AL6G52620' => 'aly', 'AL7G30830' => 'aly', 'Aqoxy1G00899' => 'aox', 'Aqoxy5G04333' => 'aox', 'Aqoxy7G00641' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3IZ0NN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4EF6AW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W9P8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79GA3M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C43NQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFCU6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G95YVJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCHK29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LU1UG8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX91RN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGB4B1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8DA0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9H7JI' => 'arhy', 'AT3G09320' => 'ath', 'AT3G60800' => 'ath', 'AT4G00840' => 'ath', 'AT4G22750' => 'ath', 'AT5G04270' => 'ath', 'ATR0090G003' => 'atr', 'ATR0559G349' => 'atr', 'ATR0680G261' => 'atr', 'ATR0810G048' => 'atr', 'Atru.chr12.831' => 'acertr', 'Atru.chr5.303' => 'acertr', 'Atru.chr5.748' => 'acertr', 'Atru.chr8.1999' => 'acertr', 'Atru.chr9.1436' => 'acertr', 'AUR62004211' => 'cqu', 'AUR62004548' => 'cqu', 'AUR62013637' => 'cqu', 'AUR62022662' => 'cqu', 'AUR62025777' => 'cqu', 'AUR62042386' => 'cqu', 'BcaB01g02310' => 'bca', 'BcaB01g06062' => 'bca', 'BcaB02g08975' => 'bca', 'BcaB02g08980' => 'bca', 'BcaC01g04228' => 'bca', 'BcaC01g06830' => 'bca', 'BcaC02g10186' => 'bca', 'BcaC02g12214' => 'bca', 'BcaC04g24101' => 'bca', 'BcaC05g29520' => 'bca', 'BcaC05g29661' => 'bca', 'BcaC06g32130' => 'bca', 'BcaC06g32131' => 'bca', 'BcaC07g40601' => 'bca', 'BcaC07g42641' => 'bca', 'BcaNung01038' => 'bca', 'BcaNung01676' => 'bca', 'BcaNung02480' => 'bca', 'BcaNung07376' => 'bca', 'BolC3t16146H' => 'bol', 'BolC3t16637H' => 'bol', 'BolC4t22257H' => 'bol', 'BolC4t24728H' => 'bol', 'BolC5t34517H' => 'bol', 'BolC7t45703H' => 'bol', 'BolC8t51166H' => 'bol', 'BolC9t53038H' => 'bol', 'BolC9t60000H' => 'bol', 'BraA01t01345Z' => 'bra', 'BraA01t01346Z' => 'bra', 'BraA01t01348Z' => 'bra', 'BraA03t12347Z' => 'bra', 'BraA03t12775Z' => 'bra', 'BraA03t14439Z' => 'bra', 'BraA04t15860Z' => 'bra', 'BraA05t19511Z' => 'bra', 'BraA05t22746Z' => 'bra', 'BraA09t35767Z' => 'bra', 'BraA09t40732Z' => 'bra', 'BraA10t45233Z' => 'bra', 'C03p38720' => 'bna', 'C03p43680' => 'bna', 'C04p06350' => 'bna', 'C04p31800' => 'bna', 'C05p58680' => 'bna', 'C07p52110' => 'bna', 'C08p35760' => 'bna', 'C09p01050' => 'bna', 'C09p72600' => 'bna', 'CAN.G106.2' => 'can', 'CAN.G1482.1' => 'can', 'CAN.G324.12' => 'can', 'CAN.G388.20' => 'can', 'CAN.G412.7' => 'can', 'CAN.G694.32' => 'can', 'CAN.G92.12' => 'can', 'CANSAT11G2353' => 'cansat', 'CANSAT21G1398' => 'cansat', 'CANSAT56G2456' => 'cansat', 'CANSAT56G3031' => 'cansat', 'CANSAT56G4539' => 'cansat', 'CARHR083680' => 'chi', 'CARHR171190' => 'chi', 'CARHR209010' => 'chi', 'CARHR229680' => 'chi', 'CARHR249490' => 'chi', 'Carub.0003s0844' => 'cru', 'Carub.0005s2755' => 'cru', 'Carub.0006s0322' => 'cru', 'Carub.0006s3586' => 'cru', 'Carub.0007s1855' => 'cru', 'Ca_07808_v3' => 'car', 'Ca_09535_v3' => 'car', 'Ca_10548_v3' => 'car', 'Ca_19913_v3' => 'car', 'Ca_19916_v3' => 'car', 'Ca_19975_v3' => 'car', 'CBR_g22876' => 'cbr', 'CBR_g22879' => 'cbr', 'CBR_g38491' => 'cbr', 'CBR_g54185' => 'cbr', 'CBR_g54190' => 'cbr', 'Cc02_g11020' => 'ccan', 'Cc02_g23920' => 'ccan', 'Cc02_g39860' => 'ccan', 'Cc02_g39870' => 'ccan', 'Cc03_g06760' => 'ccan', 'Cc06_g02450' => 'ccan', 'Cc09_g09450' => 'ccan', 'CDE02G1959' => 'cde', 'CDE04G0600' => 'cde', 'CDE07G1996' => 'cde', 'CDE07G2078' => 'cde', 'CDE11G0611' => 'cde', 'Cfa001683' => 'cfa', 'Cfa001734' => 'cfa', 'Cfa001737' => 'cfa', 'Cfa003751' => 'cfa', 'Cfa012019' => 'cfa', 'Cfa017353' => 'cfa', 'Cfa017732' => 'cfa', 'Cfa022464' => 'cfa', 'Ciclev10012400m.g' => 'ccl', 'Ciclev10021242m.g' => 'ccl', 'Ciclev10021302m.g' => 'ccl', 'Ciclev10021463m.g' => 'ccl', 'Ciclev10032359m.g' => 'ccl', 'CiPaw.01G081000' => 'cil', 'CiPaw.01G262500' => 'cil', 'CiPaw.01G269800' => 'cil', 'CiPaw.02G168400' => 'cil', 'CiPaw.05G119500' => 'cil', 'CiPaw.11G147300' => 'cil', 'ClCG01G003630' => 'cla', 'ClCG05G000510' => 'cla', 'ClCG05G002300' => 'cla', 'ClCG08G007650' => 'cla', 'ClCG10G021250' => 'cla', 'COL.COLO4_06218' => 'col', 'COL.COLO4_12538' => 'col', 'COL.COLO4_14775' => 'col', 'COL.COLO4_23875' => 'col', 'Cpa.g.sc141.16' => 'cpa', 'Cpa.g.sc169.16' => 'cpa', 'Cpa.g.sc244.4' => 'cpa', 'Cpa.g.sc244.5' => 'cpa', 'Cpa.g.sc29.87' => 'cpa', 'Cpa.g.sc53.115' => 'cpa', 'Cre03.g207502' => 'cre', 'Cre06.g277000' => 'cre', 'Cre09.g394050' => 'cre', 'CsaV3_3G007680' => 'csa', 'CsaV3_3G009710' => 'csa', 'CsaV3_3G034790' => 'csa', 'CsaV3_5G003750' => 'csa', 'CsaV3_6G036620' => 'csa', 'CSS0002288' => 'camsi', 'CSS0011250' => 'camsi', 'CSS0021619' => 'camsi', 'CSS0046701' => 'camsi', 'DCAR_006420' => 'dca', 'DCAR_006865' => 'dca', 'DCAR_008558' => 'dca', 'DCAR_028754' => 'dca', 'DCAR_028755' => 'dca', 'Dinv31218' => 'din', 'Dinv32371' => 'din', 'Dinv34250' => 'din', 'Dinv37156' => 'din', 'Dinv43704' => 'din', 'Duzib093G1811' => 'dzi', 'Duzib106G1622' => 'dzi', 'Duzib114G0504' => 'dzi', 'Duzib128G0338' => 'dzi', 'Duzib128G1577' => 'dzi', 'Duzib133G0104' => 'dzi', 'Duzib133G1080' => 'dzi', 'Duzib138G0324' => 'dzi', 'Duzib138G0394' => 'dzi', 'Duzib205G0122' => 'dzi', 'Duzib268G1020' => 'dzi', 'Duzib268G1359' => 'dzi', 'ECA232G3929' => 'eca', 'ECA236G2210' => 'eca', 'ECA236G2287' => 'eca', 'ECA240G4568' => 'eca', 'ECA247G0894' => 'eca', 'EL10Ac1g00200' => 'bvu', 'EL10Ac1g00886' => 'bvu', 'EL10As1g23091' => 'bvu', 'EL10As1g23092' => 'bvu', 'Eucgr.A01284' => 'egr', 'Eucgr.A01285' => 'egr', 'Eucgr.D02456' => 'egr', 'Eucgr.E00018' => 'egr', 'Eucgr.E01439' => 'egr', 'Eucgr.G02859' => 'egr', 'FAN01G0168' => 'fan', 'FAN01G0453' => 'fan', 'FAN01G2761' => 'fan', 'FAN02G1239' => 'fan', 'FAN03G0645' => 'fan', 'FAN03G2707' => 'fan', 'FAN03G2978' => 'fan', 'FAN04G0227' => 'fan', 'FAN06G0091' => 'fan', 'FAN06G1418' => 'fan', 'FAN06G1512' => 'fan', 'FAN06G1986' => 'fan', 'FAN06G2905' => 'fan', 'FAN06G4325' => 'fan', 'FAN08G0033' => 'fan', 'FAN09G0642' => 'fan', 'FAN10G1763' => 'fan', 'FAN10G2026' => 'fan', 'FAN10G2513' => 'fan', 'FAN10G3402' => 'fan', 'FAN10G3564' => 'fan', 'FAN10G3987' => 'fan', 'FAN13G1490' => 'fan', 'FAN14G5857' => 'fan', 'FAN18G1188' => 'fan', 'FvH4_5g00750' => 'fve', 'FvH4_6g13410' => 'fve', 'FvH4_7g11740' => 'fve', 'FvH4_7g17410' => 'fve', 'FvH4_7g18860' => 'fve', 'Glyma.01G099100' => 'gma', 'Glyma.01G142300' => 'gma', 'Glyma.03G025500' => 'gma', 'Glyma.03G069700' => 'gma', 'Glyma.03G260000' => 'gma', 'Glyma.09G269800' => 'gma', 'Glyma.10G208700' => 'gma', 'Glyma.18G220400' => 'gma', 'Glyma.20G182000' => 'gma', 'Gohir.A01G221726' => 'ghi', 'Gohir.A07G134600' => 'ghi', 'Gohir.A07G146000' => 'ghi', 'Gohir.A08G173900' => 'ghi', 'Gohir.A09G194900' => 'ghi', 'Gohir.A10G204100' => 'ghi', 'Gohir.A11G080600' => 'ghi', 'Gohir.A11G327500' => 'ghi', 'Gohir.A12G101800' => 'ghi', 'Gohir.D01G211200' => 'ghi', 'Gohir.D07G139200' => 'ghi', 'Gohir.D07G152100' => 'ghi', 'Gohir.D08G192600' => 'ghi', 'Gohir.D09G189200' => 'ghi', 'Gohir.D10G212000' => 'ghi', 'Gohir.D11G085200' => 'ghi', 'Gohir.D11G346400' => 'ghi', 'Gohir.D12G104800' => 'ghi', 'Gorai.001G151300' => 'gra', 'Gorai.001G174100' => 'gra', 'Gorai.002G257000' => 'gra', 'Gorai.004G202600' => 'gra', 'Gorai.007G090900' => 'gra', 'Gorai.007G376700' => 'gra', 'Gorai.008G114100' => 'gra', 'Gorai.011G237900' => 'gra', 'GSVIVG01005450001' => 'vvi', 'GSVIVG01016232001' => 'vvi', 'GSVIVG01026157001' => 'vvi', 'GSVIVG01027419001' => 'vvi', 'GSVIVG01027631001' => 'vvi', 'GSVIVG01034143001' => 'vvi', 'HanXRQChr03g0093921' => 'han', 'HanXRQChr04g0120001' => 'han', 'HanXRQChr04g0122561' => 'han', 'HanXRQChr09g0246851' => 'han', 'HanXRQChr10g0293311' => 'han', 'HanXRQChr13g0425231' => 'han', 'HanXRQChr16g0532571' => 'han', 'Haze_09050' => 'cav', 'Haze_15715' => 'cav', 'Haze_15716' => 'cav', 'Haze_16803' => 'cav', 'Haze_16850' => 'cav', 'Hma1.2p1_0301F.1_g118655' => 'hma', 'Hma1.2p1_0309F.1_g120590' => 'hma', 'Hma1.2p1_0936F.1_g238900' => 'hma', 'Hma1.2p1_3552F.1_g336740' => 'hma', 'HPP92_003520' => 'vpl', 'HPP92_006628' => 'vpl', 'HPP92_006645' => 'vpl', 'HPP92_014669' => 'vpl', 'HPP92_015077' => 'vpl', 'Hund16742' => 'sun', 'Hund17022' => 'sun', 'Lalb_Chr02g0152131' => 'lal', 'Lalb_Chr05g0225371' => 'lal', 'Lalb_Chr07g0189841' => 'lal', 'Lalb_Chr07g0192961' => 'lal', 'Lalb_Chr12g0208221' => 'lal', 'Lalb_Chr13g0291211' => 'lal', 'Lalb_Chr13g0291781' => 'lal', 'Lalb_Chr18g0044651' => 'lal', 'Lalb_Chr21g0313731' => 'lal', 'Lj1g0022533' => 'lja', 'Lj2A18T50' => 'lonja', 'Lj2A92G93' => 'lonja', 'Lj3A965T73' => 'lonja', 'Lj3g0000673' => 'lja', 'Lj3g0002666' => 'lja', 'Lj4g0016985' => 'lja', 'Lj5g0003625' => 'lja', 'Lj7A529G36' => 'lonja', 'Lj9A569T49' => 'lonja', 'Lj9A604T63' => 'lonja', 'Lsat_1_v5_gn_3_132060' => 'lsa', 'Lsat_1_v5_gn_4_68941' => 'lsa', 'Lsat_1_v5_gn_5_95580' => 'lsa', 'Lsat_1_v5_gn_7_161' => 'lsa', 'Lsat_1_v5_gn_7_7041' => 'lsa', 'Lsat_1_v5_gn_9_33481' => 'lsa', 'Lsat_1_v5_gn_9_68260' => 'lsa', 'Manes.01G073100' => 'mes', 'Manes.01G266300' => 'mes', 'Manes.02G033300' => 'mes', 'Manes.05G017900' => 'mes', 'Manes.05G046100' => 'mes', 'Manes.08G080900' => 'mes', 'Manes.10G049400' => 'mes', 'Mapoly0009s0186' => 'mpo', 'Mapoly0036s0118' => 'mpo', 'Mapoly0101s0046' => 'mpo', 'MBI04_g30218_MAGBIO' => 'mbi', 'MBI04_g35564_MAGBIO' => 'mbi', 'MBI12_g34011_MAGBIO' => 'mbi', 'MBI14_g04655_MAGBIO' => 'mbi', 'MCO07G653' => 'mco', 'MCO10G173' => 'mco', 'MD01G1087100' => 'mdo', 'MD01G1104200' => 'mdo', 'MD02G1205100' => 'mdo', 'MD04G1079200' => 'mdo', 'MD04G1131400' => 'mdo', 'MD07G1121600' => 'mdo', 'MD07G1157300' => 'mdo', 'MD07G1171000' => 'mdo', 'MD12G1144500' => 'mdo', 'Medtr1g094610' => 'mtr', 'Medtr4g021795' => 'mtr', 'Medtr4g023760' => 'mtr', 'Medtr7g118050' => 'mtr', 'MELO3C005582.2' => 'cme', 'MELO3C005989.2' => 'cme', 'MELO3C006192.2' => 'cme', 'MELO3C009248.2' => 'cme', 'MELO3C019817.2' => 'cme', 'Migut.B01625' => 'egut', 'Migut.B01915' => 'egut', 'Migut.F01721' => 'egut', 'Migut.J00314' => 'egut', 'MSTRG.20742' => 'ama', 'MSTRG.8134' => 'ama', 'Nitab4.5_0000096g0010' => 'nta', 'Nitab4.5_0000202g0030' => 'nta', 'Nitab4.5_0000216g0370' => 'nta', 'Nitab4.5_0000457g0230' => 'nta', 'Nitab4.5_0001702g0170' => 'nta', 'Nitab4.5_0003607g0010' => 'nta', 'Nitab4.5_0004917g0020' => 'nta', 'Nitab4.5_0007059g0010' => 'nta', 'Nitab4.5_0007184g0010' => 'nta', 'Nitab4.5_0007346g0020' => 'nta', 'Nn1g00410' => 'nnu', 'Nn1g01252' => 'nnu', 'Nn2g11168' => 'nnu', 'Nn2g13403' => 'nnu', 'Nn2g13760' => 'nnu', 'Nn4g26380' => 'nnu', 'Oeu000806.2' => 'oeu', 'Oeu005788.1' => 'oeu', 'Oeu006900.3' => 'oeu', 'Oeu007797.1' => 'oeu', 'Oeu011932.1' => 'oeu', 'Oeu022739.1' => 'oeu', 'Oeu037918.1' => 'oeu', 'Oeu055490.2' => 'oeu', 'Os01g0844400' => 'osa', 'Os02g0819100' => 'osa', 'Os03g0804300' => 'osa', 'Os05g0458000' => 'osa', 'Os07g0467800' => 'osa', 'Os12g0602200' => 'osa', 'Peaxi162Scf00013g03444' => 'pax', 'Peaxi162Scf00094g01120' => 'pax', 'Peaxi162Scf00191g01211' => 'pax', 'Peaxi162Scf00238g01110' => 'pax', 'Peaxi162Scf00330g00719' => 'pax', 'Peaxi162Scf00627g00018' => 'pax', 'PGR031G2686' => 'pgr', 'PGR042G0809' => 'pgr', 'PGR142G0193' => 'pgr', 'PGSC0003DMG400011066' => 'stu', 'PGSC0003DMG400012041' => 'stu', 'PGSC0003DMG400013678' => 'stu', 'PGSC0003DMG400023477' => 'stu', 'PGSC0003DMG400025956' => 'stu', 'PGSC0003DMG401019151' => 'stu', 'Phvul.006G116400' => 'pvu', 'Phvul.007G097300' => 'pvu', 'Phvul.010G015000' => 'pvu', 'Phvul.010G083900' => 'pvu', 'Potri.001G117100' => 'ptr', 'Potri.002G147300' => 'ptr', 'Potri.003G115600' => 'ptr', 'Potri.006G087400' => 'ptr', 'Potri.010G226100' => 'ptr', 'Potri.014G069200' => 'ptr', 'Potri.014G104000' => 'ptr', 'Potri.016G100200' => 'ptr', 'Pp3c10_20450' => 'ppa', 'Pp3c1_42400' => 'ppa', 'Pp3c3_24390' => 'ppa', 'Pp3c3_2860' => 'ppa', 'PRCOL_00003193' => 'pco', 'Prupe.2G144500' => 'ppe', 'Prupe.2G195700' => 'ppe', 'Prupe.2G209800' => 'ppe', 'Prupe.5G080000' => 'ppe', 'Prupe.6G257900' => 'ppe', 'Psat3g001160' => 'psa', 'Psat6g181880' => 'psa', 'Psat7g233720' => 'psa', 'PSO063G7587' => 'pso', 'PSO339G2145' => 'pso', 'PSO339G3369' => 'pso', 'PSO478G2747' => 'pso', 'PSO513G0140' => 'pso', 'PSO782G1614' => 'pso', 'PSO782G4889' => 'pso', 'PSO782G5485' => 'pso', 'PSO801G0241' => 'pso', 'QL07p048854' => 'qlo', 'QL08p046745' => 'qlo', 'QL08p052606' => 'qlo', 'QL08p053414' => 'qlo', 'QL08p054868' => 'qlo', 'RcHm_v2.0_Chr1g0350251' => 'rch', 'RcHm_v2.0_Chr1g0360851' => 'rch', 'RcHm_v2.0_Chr1g0362791' => 'rch', 'RcHm_v2.0_Chr3g0466281' => 'rch', 'RcHm_v2.0_Chr7g0201481' => 'rch', 'Rhsim01G0148600' => 'rsi', 'Rhsim05G0194400' => 'rsi', 'Rhsim07G0000700' => 'rsi', 'Rhsim07G0000800' => 'rsi', 'Rhsim07G0027900' => 'rsi', 'Rhsim09G0149500' => 'rsi', 'RhsimUnG0186900' => 'rsi', 'Sabra01G0089900' => 'sbr', 'Sabra02G0114700' => 'sbr', 'Sabra02G0116300' => 'sbr', 'Sabra03G0080100' => 'sbr', 'Sabra08G0024300' => 'sbr', 'Sabra10G0174300' => 'sbr', 'Sabra14G0048900' => 'sbr', 'Sabra14G0076500' => 'sbr', 'SalBow5G2513' => 'sbo', 'Sc01g0002300' => 'sci', 'Sc01g0004450' => 'sci', 'Sc06g0001680' => 'sci', 'Sc23g0003580' => 'sci', 'Sed0000913' => 'sed', 'Sed0001655' => 'sed', 'Sed0007745' => 'sed', 'Sed0010951' => 'sed', 'Sed0017599' => 'sed', 'Sed0021405' => 'sed', 'Sed0022810' => 'sed', 'SEGI_07099' => 'sgi', 'SEGI_11931' => 'sgi', 'SEGI_13187' => 'sgi', 'SEGI_29958' => 'sgi', 'SEGI_36351' => 'sgi', 'SGA_v2.0_scaffold126G33770' => 'sas', 'SGA_v2.0_scaffold153G37003' => 'sas', 'SGA_v2.0_scaffold2G01359' => 'sas', 'SGA_v2.0_scaffold5G03064' => 'sas', 'SGA_v2.0_scaffold95G28903' => 'sas', 'SHI12701' => 'shi', 'SHI26410' => 'shi', 'SHI38997' => 'shi', 'SHI53759' => 'shi', 'SHI53886' => 'shi', 'SHI54714' => 'shi', 'SMO011G0041' => 'smo', 'SMO146G0251' => 'smo', 'SMO160G0004' => 'smo', 'SMO174G0057' => 'smo', 'SMO244G0089' => 'smo', 'SMO296G0011' => 'smo', 'Solyc01g091280.3' => 'sly', 'Solyc05g047610.3' => 'sly', 'Solyc05g047640.3' => 'sly', 'Solyc05g055630.3' => 'sly', 'Solyc10g018160.2' => 'sly', 'Solyc10g084820.2' => 'sly', 'Solyc10g086565.2' => 'sly', 'Sopen01g037030' => 'spe', 'Sopen05g027920' => 'spe', 'Sopen05g034070' => 'spe', 'Sopen10g007260' => 'spe', 'Sopen10g034260' => 'spe', 'Sopen10g035950' => 'spe', 'Sp3g07710' => 'spa', 'Sp4g27420' => 'spa', 'Sp5g02450' => 'spa', 'Sp6g01280' => 'spa', 'Sp6g38480' => 'spa', 'Sp7g20780' => 'spa', 'TAR374G1413' => 'tar', 'TAR623G1777' => 'tar', 'TAR629G2370' => 'tar', 'TAR633G1759' => 'tar', 'TAR636G3387' => 'tar', 'THA.LOC104802447' => 'tha', 'THA.LOC104813916' => 'tha', 'THA.LOC104816423' => 'tha', 'THA.LOC104817246' => 'tha', 'THA.LOC104825895' => 'tha', 'Thecc.01G335200' => 'tca', 'Thecc.01G377400' => 'tca', 'Thecc.03G262200' => 'tca', 'Thecc.05G036800' => 'tca', 'Thecc.10G080500' => 'tca', 'Thecc.10G080800' => 'tca', 'Thhalv10001560m.g' => 'esa', 'Thhalv10006120m.g' => 'esa', 'Thhalv10014375m.g' => 'esa', 'Thhalv10021264m.g' => 'esa', 'Thhalv10028856m.g' => 'esa', 'TPR.G1914' => 'tpr', 'TPR.G4757' => 'tpr', 'TPR.G5595' => 'tpr', 'TWI14G0952' => 'twi', 'TWI14G1307' => 'twi', 'TWI38G2143' => 'twi', 'TWI59G0826' => 'twi', 'TWI77G0527' => 'twi', 'TWI81G0150' => 'twi', 'unitig_21.g21018' => 'ugi', 'unitig_26.g9725' => 'ugi', 'unitig_744.g24653' => 'ugi', 'unitig_749.g13778' => 'ugi', 'unitig_899.g15035' => 'ugi', 'vmacro04296' => 'vma', 'vmacro04852' => 'vma', 'vmacro13404' => 'vma', 'vmacro20169' => 'vma', 'vmacro21014' => 'vma', 'VMungo0331G0237' => 'vmu', 'VMungo0331G0706' => 'vmu', 'VMungo0331G1361' => 'vmu', 'VMungo0331G1489' => 'vmu', 'VMungo0540G1037' => 'vmu', 'VMungo0720G2487' => 'vmu', 'VMungo0720G2721' => 'vmu', 'Zm00001eb086860' => 'zma', 'Zm00001eb104760' => 'zma', 'Zm00001eb148220' => 'zma', 'Zm00001eb259030' => 'zma', 'Zm00001eb289590' => 'zma', 'Zm00001eb420150' => 'zma' ), 'gf_id' => 'HOM05D000968', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000968' ), 'data_identifier' => 'HOM05D000968', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000968', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p31690' => 'bna', 'A03p36040' => 'bna', 'A03p53730' => 'bna', 'A04p01410' => 'bna', 'A05p05420' => 'bna', 'A05p39630' => 'bna', 'A05p39640' => 'bna', 'A09p00970' => 'bna', 'A09p53060' => 'bna', 'A10p31890' => 'bna', 'Aa31LG10G15040' => 'aar', 'Aa31LG1G21090' => 'aar', 'Aa31LG1G26900' => 'aar', 'Aa31LG3G1820' => 'aar', 'Aa31LG5G1100' => 'aar', 'Aa31LG6G4740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2265' => 'aag', 'Actinidia07998' => 'ach', 'Actinidia11266' => 'ach', 'Actinidia12682' => 'ach', 'Actinidia26479' => 'ach', 'Actinidia31406' => 'ach', 'Actinidia32437' => 'ach', 'Actinidia38862' => 'ach', 'Ah.05g174230' => 'amhyb', 'Ah.05g179070' => 'amhyb', 'Ah.05g179090' => 'amhyb', 'Ah.12g059950' => 'amhyb', 'AL3G20480' => 'aly', 'AL4G44520' => 'aly', 'AL5G43110' => 'aly', 'AL6G13890' => 'aly', 'AL6G52620' => 'aly', 'AL7G30830' => 'aly', 'Aqoxy1G00899' => 'aox', 'Aqoxy5G04333' => 'aox', 'Aqoxy7G00641' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3IZ0NN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4EF6AW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W9P8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79GA3M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C43NQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFCU6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G95YVJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCHK29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LU1UG8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX91RN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGB4B1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8DA0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9H7JI' => 'arhy', 'AT3G09320' => 'ath', 'AT3G60800' => 'ath', 'AT4G00840' => 'ath', 'AT4G22750' => 'ath', 'AT5G04270' => 'ath', 'ATR0090G003' => 'atr', 'ATR0559G349' => 'atr', 'ATR0680G261' => 'atr', 'ATR0810G048' => 'atr', 'Atru.chr12.831' => 'acertr', 'Atru.chr5.303' => 'acertr', 'Atru.chr5.748' => 'acertr', 'Atru.chr8.1999' => 'acertr', 'Atru.chr9.1436' => 'acertr', 'AUR62004211' => 'cqu', 'AUR62004548' => 'cqu', 'AUR62013637' => 'cqu', 'AUR62022662' => 'cqu', 'AUR62025777' => 'cqu', 'AUR62042386' => 'cqu', 'BcaB01g02310' => 'bca', 'BcaB01g06062' => 'bca', 'BcaB02g08975' => 'bca', 'BcaB02g08980' => 'bca', 'BcaC01g04228' => 'bca', 'BcaC01g06830' => 'bca', 'BcaC02g10186' => 'bca', 'BcaC02g12214' => 'bca', 'BcaC04g24101' => 'bca', 'BcaC05g29520' => 'bca', 'BcaC05g29661' => 'bca', 'BcaC06g32130' => 'bca', 'BcaC06g32131' => 'bca', 'BcaC07g40601' => 'bca', 'BcaC07g42641' => 'bca', 'BcaNung01038' => 'bca', 'BcaNung01676' => 'bca', 'BcaNung02480' => 'bca', 'BcaNung07376' => 'bca', 'BolC3t16146H' => 'bol', 'BolC3t16637H' => 'bol', 'BolC4t22257H' => 'bol', 'BolC4t24728H' => 'bol', 'BolC5t34517H' => 'bol', 'BolC7t45703H' => 'bol', 'BolC8t51166H' => 'bol', 'BolC9t53038H' => 'bol', 'BolC9t60000H' => 'bol', 'BraA01t01345Z' => 'bra', 'BraA01t01346Z' => 'bra', 'BraA01t01348Z' => 'bra', 'BraA03t12347Z' => 'bra', 'BraA03t12775Z' => 'bra', 'BraA03t14439Z' => 'bra', 'BraA04t15860Z' => 'bra', 'BraA05t19511Z' => 'bra', 'BraA05t22746Z' => 'bra', 'BraA09t35767Z' => 'bra', 'BraA09t40732Z' => 'bra', 'BraA10t45233Z' => 'bra', 'C03p38720' => 'bna', 'C03p43680' => 'bna', 'C04p06350' => 'bna', 'C04p31800' => 'bna', 'C05p58680' => 'bna', 'C07p52110' => 'bna', 'C08p35760' => 'bna', 'C09p01050' => 'bna', 'C09p72600' => 'bna', 'CAN.G106.2' => 'can', 'CAN.G1482.1' => 'can', 'CAN.G324.12' => 'can', 'CAN.G388.20' => 'can', 'CAN.G412.7' => 'can', 'CAN.G694.32' => 'can', 'CAN.G92.12' => 'can', 'CANSAT11G2353' => 'cansat', 'CANSAT21G1398' => 'cansat', 'CANSAT56G2456' => 'cansat', 'CANSAT56G3031' => 'cansat', 'CANSAT56G4539' => 'cansat', 'CARHR083680' => 'chi', 'CARHR171190' => 'chi', 'CARHR209010' => 'chi', 'CARHR229680' => 'chi', 'CARHR249490' => 'chi', 'Carub.0003s0844' => 'cru', 'Carub.0005s2755' => 'cru', 'Carub.0006s0322' => 'cru', 'Carub.0006s3586' => 'cru', 'Carub.0007s1855' => 'cru', 'Ca_07808_v3' => 'car', 'Ca_09535_v3' => 'car', 'Ca_10548_v3' => 'car', 'Ca_19913_v3' => 'car', 'Ca_19916_v3' => 'car', 'Ca_19975_v3' => 'car', 'CBR_g22876' => 'cbr', 'CBR_g22879' => 'cbr', 'CBR_g38491' => 'cbr', 'CBR_g54185' => 'cbr', 'CBR_g54190' => 'cbr', 'Cc02_g11020' => 'ccan', 'Cc02_g23920' => 'ccan', 'Cc02_g39860' => 'ccan', 'Cc02_g39870' => 'ccan', 'Cc03_g06760' => 'ccan', 'Cc06_g02450' => 'ccan', 'Cc09_g09450' => 'ccan', 'CDE02G1959' => 'cde', 'CDE04G0600' => 'cde', 'CDE07G1996' => 'cde', 'CDE07G2078' => 'cde', 'CDE11G0611' => 'cde', 'Cfa001683' => 'cfa', 'Cfa001734' => 'cfa', 'Cfa001737' => 'cfa', 'Cfa003751' => 'cfa', 'Cfa012019' => 'cfa', 'Cfa017353' => 'cfa', 'Cfa017732' => 'cfa', 'Cfa022464' => 'cfa', 'Ciclev10012400m.g' => 'ccl', 'Ciclev10021242m.g' => 'ccl', 'Ciclev10021302m.g' => 'ccl', 'Ciclev10021463m.g' => 'ccl', 'Ciclev10032359m.g' => 'ccl', 'CiPaw.01G081000' => 'cil', 'CiPaw.01G262500' => 'cil', 'CiPaw.01G269800' => 'cil', 'CiPaw.02G168400' => 'cil', 'CiPaw.05G119500' => 'cil', 'CiPaw.11G147300' => 'cil', 'ClCG01G003630' => 'cla', 'ClCG05G000510' => 'cla', 'ClCG05G002300' => 'cla', 'ClCG08G007650' => 'cla', 'ClCG10G021250' => 'cla', 'COL.COLO4_06218' => 'col', 'COL.COLO4_12538' => 'col', 'COL.COLO4_14775' => 'col', 'COL.COLO4_23875' => 'col', 'Cpa.g.sc141.16' => 'cpa', 'Cpa.g.sc169.16' => 'cpa', 'Cpa.g.sc244.4' => 'cpa', 'Cpa.g.sc244.5' => 'cpa', 'Cpa.g.sc29.87' => 'cpa', 'Cpa.g.sc53.115' => 'cpa', 'Cre03.g207502' => 'cre', 'Cre06.g277000' => 'cre', 'Cre09.g394050' => 'cre', 'CsaV3_3G007680' => 'csa', 'CsaV3_3G009710' => 'csa', 'CsaV3_3G034790' => 'csa', 'CsaV3_5G003750' => 'csa', 'CsaV3_6G036620' => 'csa', 'CSS0002288' => 'camsi', 'CSS0011250' => 'camsi', 'CSS0021619' => 'camsi', 'CSS0046701' => 'camsi', 'DCAR_006420' => 'dca', 'DCAR_006865' => 'dca', 'DCAR_008558' => 'dca', 'DCAR_028754' => 'dca', 'DCAR_028755' => 'dca', 'Dinv31218' => 'din', 'Dinv32371' => 'din', 'Dinv34250' => 'din', 'Dinv37156' => 'din', 'Dinv43704' => 'din', 'Duzib093G1811' => 'dzi', 'Duzib106G1622' => 'dzi', 'Duzib114G0504' => 'dzi', 'Duzib128G0338' => 'dzi', 'Duzib128G1577' => 'dzi', 'Duzib133G0104' => 'dzi', 'Duzib133G1080' => 'dzi', 'Duzib138G0324' => 'dzi', 'Duzib138G0394' => 'dzi', 'Duzib205G0122' => 'dzi', 'Duzib268G1020' => 'dzi', 'Duzib268G1359' => 'dzi', 'ECA232G3929' => 'eca', 'ECA236G2210' => 'eca', 'ECA236G2287' => 'eca', 'ECA240G4568' => 'eca', 'ECA247G0894' => 'eca', 'EL10Ac1g00200' => 'bvu', 'EL10Ac1g00886' => 'bvu', 'EL10As1g23091' => 'bvu', 'EL10As1g23092' => 'bvu', 'Eucgr.A01284' => 'egr', 'Eucgr.A01285' => 'egr', 'Eucgr.D02456' => 'egr', 'Eucgr.E00018' => 'egr', 'Eucgr.E01439' => 'egr', 'Eucgr.G02859' => 'egr', 'FAN01G0168' => 'fan', 'FAN01G0453' => 'fan', 'FAN01G2761' => 'fan', 'FAN02G1239' => 'fan', 'FAN03G0645' => 'fan', 'FAN03G2707' => 'fan', 'FAN03G2978' => 'fan', 'FAN04G0227' => 'fan', 'FAN06G0091' => 'fan', 'FAN06G1418' => 'fan', 'FAN06G1512' => 'fan', 'FAN06G1986' => 'fan', 'FAN06G2905' => 'fan', 'FAN06G4325' => 'fan', 'FAN08G0033' => 'fan', 'FAN09G0642' => 'fan', 'FAN10G1763' => 'fan', 'FAN10G2026' => 'fan', 'FAN10G2513' => 'fan', 'FAN10G3402' => 'fan', 'FAN10G3564' => 'fan', 'FAN10G3987' => 'fan', 'FAN13G1490' => 'fan', 'FAN14G5857' => 'fan', 'FAN18G1188' => 'fan', 'FvH4_5g00750' => 'fve', 'FvH4_6g13410' => 'fve', 'FvH4_7g11740' => 'fve', 'FvH4_7g17410' => 'fve', 'FvH4_7g18860' => 'fve', 'Glyma.01G099100' => 'gma', 'Glyma.01G142300' => 'gma', 'Glyma.03G025500' => 'gma', 'Glyma.03G069700' => 'gma', 'Glyma.03G260000' => 'gma', 'Glyma.09G269800' => 'gma', 'Glyma.10G208700' => 'gma', 'Glyma.18G220400' => 'gma', 'Glyma.20G182000' => 'gma', 'Gohir.A01G221726' => 'ghi', 'Gohir.A07G134600' => 'ghi', 'Gohir.A07G146000' => 'ghi', 'Gohir.A08G173900' => 'ghi', 'Gohir.A09G194900' => 'ghi', 'Gohir.A10G204100' => 'ghi', 'Gohir.A11G080600' => 'ghi', 'Gohir.A11G327500' => 'ghi', 'Gohir.A12G101800' => 'ghi', 'Gohir.D01G211200' => 'ghi', 'Gohir.D07G139200' => 'ghi', 'Gohir.D07G152100' => 'ghi', 'Gohir.D08G192600' => 'ghi', 'Gohir.D09G189200' => 'ghi', 'Gohir.D10G212000' => 'ghi', 'Gohir.D11G085200' => 'ghi', 'Gohir.D11G346400' => 'ghi', 'Gohir.D12G104800' => 'ghi', 'Gorai.001G151300' => 'gra', 'Gorai.001G174100' => 'gra', 'Gorai.002G257000' => 'gra', 'Gorai.004G202600' => 'gra', 'Gorai.007G090900' => 'gra', 'Gorai.007G376700' => 'gra', 'Gorai.008G114100' => 'gra', 'Gorai.011G237900' => 'gra', 'GSVIVG01005450001' => 'vvi', 'GSVIVG01016232001' => 'vvi', 'GSVIVG01026157001' => 'vvi', 'GSVIVG01027419001' => 'vvi', 'GSVIVG01027631001' => 'vvi', 'GSVIVG01034143001' => 'vvi', 'HanXRQChr03g0093921' => 'han', 'HanXRQChr04g0120001' => 'han', 'HanXRQChr04g0122561' => 'han', 'HanXRQChr09g0246851' => 'han', 'HanXRQChr10g0293311' => 'han', 'HanXRQChr13g0425231' => 'han', 'HanXRQChr16g0532571' => 'han', 'Haze_09050' => 'cav', 'Haze_15715' => 'cav', 'Haze_15716' => 'cav', 'Haze_16803' => 'cav', 'Haze_16850' => 'cav', 'Hma1.2p1_0301F.1_g118655' => 'hma', 'Hma1.2p1_0309F.1_g120590' => 'hma', 'Hma1.2p1_0936F.1_g238900' => 'hma', 'Hma1.2p1_3552F.1_g336740' => 'hma', 'HPP92_003520' => 'vpl', 'HPP92_006628' => 'vpl', 'HPP92_006645' => 'vpl', 'HPP92_014669' => 'vpl', 'HPP92_015077' => 'vpl', 'Hund16742' => 'sun', 'Hund17022' => 'sun', 'Lalb_Chr02g0152131' => 'lal', 'Lalb_Chr05g0225371' => 'lal', 'Lalb_Chr07g0189841' => 'lal', 'Lalb_Chr07g0192961' => 'lal', 'Lalb_Chr12g0208221' => 'lal', 'Lalb_Chr13g0291211' => 'lal', 'Lalb_Chr13g0291781' => 'lal', 'Lalb_Chr18g0044651' => 'lal', 'Lalb_Chr21g0313731' => 'lal', 'Lj1g0022533' => 'lja', 'Lj2A18T50' => 'lonja', 'Lj2A92G93' => 'lonja', 'Lj3A965T73' => 'lonja', 'Lj3g0000673' => 'lja', 'Lj3g0002666' => 'lja', 'Lj4g0016985' => 'lja', 'Lj5g0003625' => 'lja', 'Lj7A529G36' => 'lonja', 'Lj9A569T49' => 'lonja', 'Lj9A604T63' => 'lonja', 'Lsat_1_v5_gn_3_132060' => 'lsa', 'Lsat_1_v5_gn_4_68941' => 'lsa', 'Lsat_1_v5_gn_5_95580' => 'lsa', 'Lsat_1_v5_gn_7_161' => 'lsa', 'Lsat_1_v5_gn_7_7041' => 'lsa', 'Lsat_1_v5_gn_9_33481' => 'lsa', 'Lsat_1_v5_gn_9_68260' => 'lsa', 'Manes.01G073100' => 'mes', 'Manes.01G266300' => 'mes', 'Manes.02G033300' => 'mes', 'Manes.05G017900' => 'mes', 'Manes.05G046100' => 'mes', 'Manes.08G080900' => 'mes', 'Manes.10G049400' => 'mes', 'Mapoly0009s0186' => 'mpo', 'Mapoly0036s0118' => 'mpo', 'Mapoly0101s0046' => 'mpo', 'MBI04_g30218_MAGBIO' => 'mbi', 'MBI04_g35564_MAGBIO' => 'mbi', 'MBI12_g34011_MAGBIO' => 'mbi', 'MBI14_g04655_MAGBIO' => 'mbi', 'MCO07G653' => 'mco', 'MCO10G173' => 'mco', 'MD01G1087100' => 'mdo', 'MD01G1104200' => 'mdo', 'MD02G1205100' => 'mdo', 'MD04G1079200' => 'mdo', 'MD04G1131400' => 'mdo', 'MD07G1121600' => 'mdo', 'MD07G1157300' => 'mdo', 'MD07G1171000' => 'mdo', 'MD12G1144500' => 'mdo', 'Medtr1g094610' => 'mtr', 'Medtr4g021795' => 'mtr', 'Medtr4g023760' => 'mtr', 'Medtr7g118050' => 'mtr', 'MELO3C005582.2' => 'cme', 'MELO3C005989.2' => 'cme', 'MELO3C006192.2' => 'cme', 'MELO3C009248.2' => 'cme', 'MELO3C019817.2' => 'cme', 'Migut.B01625' => 'egut', 'Migut.B01915' => 'egut', 'Migut.F01721' => 'egut', 'Migut.J00314' => 'egut', 'MSTRG.20742' => 'ama', 'MSTRG.8134' => 'ama', 'Nitab4.5_0000096g0010' => 'nta', 'Nitab4.5_0000202g0030' => 'nta', 'Nitab4.5_0000216g0370' => 'nta', 'Nitab4.5_0000457g0230' => 'nta', 'Nitab4.5_0001702g0170' => 'nta', 'Nitab4.5_0003607g0010' => 'nta', 'Nitab4.5_0004917g0020' => 'nta', 'Nitab4.5_0007059g0010' => 'nta', 'Nitab4.5_0007184g0010' => 'nta', 'Nitab4.5_0007346g0020' => 'nta', 'Nn1g00410' => 'nnu', 'Nn1g01252' => 'nnu', 'Nn2g11168' => 'nnu', 'Nn2g13403' => 'nnu', 'Nn2g13760' => 'nnu', 'Nn4g26380' => 'nnu', 'Oeu000806.2' => 'oeu', 'Oeu005788.1' => 'oeu', 'Oeu006900.3' => 'oeu', 'Oeu007797.1' => 'oeu', 'Oeu011932.1' => 'oeu', 'Oeu022739.1' => 'oeu', 'Oeu037918.1' => 'oeu', 'Oeu055490.2' => 'oeu', 'Os01g0844400' => 'osa', 'Os02g0819100' => 'osa', 'Os03g0804300' => 'osa', 'Os05g0458000' => 'osa', 'Os07g0467800' => 'osa', 'Os12g0602200' => 'osa', 'Peaxi162Scf00013g03444' => 'pax', 'Peaxi162Scf00094g01120' => 'pax', 'Peaxi162Scf00191g01211' => 'pax', 'Peaxi162Scf00238g01110' => 'pax', 'Peaxi162Scf00330g00719' => 'pax', 'Peaxi162Scf00627g00018' => 'pax', 'PGR031G2686' => 'pgr', 'PGR042G0809' => 'pgr', 'PGR142G0193' => 'pgr', 'PGSC0003DMG400011066' => 'stu', 'PGSC0003DMG400012041' => 'stu', 'PGSC0003DMG400013678' => 'stu', 'PGSC0003DMG400023477' => 'stu', 'PGSC0003DMG400025956' => 'stu', 'PGSC0003DMG401019151' => 'stu', 'Phvul.006G116400' => 'pvu', 'Phvul.007G097300' => 'pvu', 'Phvul.010G015000' => 'pvu', 'Phvul.010G083900' => 'pvu', 'Potri.001G117100' => 'ptr', 'Potri.002G147300' => 'ptr', 'Potri.003G115600' => 'ptr', 'Potri.006G087400' => 'ptr', 'Potri.010G226100' => 'ptr', 'Potri.014G069200' => 'ptr', 'Potri.014G104000' => 'ptr', 'Potri.016G100200' => 'ptr', 'Pp3c10_20450' => 'ppa', 'Pp3c1_42400' => 'ppa', 'Pp3c3_24390' => 'ppa', 'Pp3c3_2860' => 'ppa', 'PRCOL_00003193' => 'pco', 'Prupe.2G144500' => 'ppe', 'Prupe.2G195700' => 'ppe', 'Prupe.2G209800' => 'ppe', 'Prupe.5G080000' => 'ppe', 'Prupe.6G257900' => 'ppe', 'Psat3g001160' => 'psa', 'Psat6g181880' => 'psa', 'Psat7g233720' => 'psa', 'PSO063G7587' => 'pso', 'PSO339G2145' => 'pso', 'PSO339G3369' => 'pso', 'PSO478G2747' => 'pso', 'PSO513G0140' => 'pso', 'PSO782G1614' => 'pso', 'PSO782G4889' => 'pso', 'PSO782G5485' => 'pso', 'PSO801G0241' => 'pso', 'QL07p048854' => 'qlo', 'QL08p046745' => 'qlo', 'QL08p052606' => 'qlo', 'QL08p053414' => 'qlo', 'QL08p054868' => 'qlo', 'RcHm_v2.0_Chr1g0350251' => 'rch', 'RcHm_v2.0_Chr1g0360851' => 'rch', 'RcHm_v2.0_Chr1g0362791' => 'rch', 'RcHm_v2.0_Chr3g0466281' => 'rch', 'RcHm_v2.0_Chr7g0201481' => 'rch', 'Rhsim01G0148600' => 'rsi', 'Rhsim05G0194400' => 'rsi', 'Rhsim07G0000700' => 'rsi', 'Rhsim07G0000800' => 'rsi', 'Rhsim07G0027900' => 'rsi', 'Rhsim09G0149500' => 'rsi', 'RhsimUnG0186900' => 'rsi', 'Sabra01G0089900' => 'sbr', 'Sabra02G0114700' => 'sbr', 'Sabra02G0116300' => 'sbr', 'Sabra03G0080100' => 'sbr', 'Sabra08G0024300' => 'sbr', 'Sabra10G0174300' => 'sbr', 'Sabra14G0048900' => 'sbr', 'Sabra14G0076500' => 'sbr', 'SalBow5G2513' => 'sbo', 'Sc01g0002300' => 'sci', 'Sc01g0004450' => 'sci', 'Sc06g0001680' => 'sci', 'Sc23g0003580' => 'sci', 'Sed0000913' => 'sed', 'Sed0001655' => 'sed', 'Sed0007745' => 'sed', 'Sed0010951' => 'sed', 'Sed0017599' => 'sed', 'Sed0021405' => 'sed', 'Sed0022810' => 'sed', 'SEGI_07099' => 'sgi', 'SEGI_11931' => 'sgi', 'SEGI_13187' => 'sgi', 'SEGI_29958' => 'sgi', 'SEGI_36351' => 'sgi', 'SGA_v2.0_scaffold126G33770' => 'sas', 'SGA_v2.0_scaffold153G37003' => 'sas', 'SGA_v2.0_scaffold2G01359' => 'sas', 'SGA_v2.0_scaffold5G03064' => 'sas', 'SGA_v2.0_scaffold95G28903' => 'sas', 'SHI12701' => 'shi', 'SHI26410' => 'shi', 'SHI38997' => 'shi', 'SHI53759' => 'shi', 'SHI53886' => 'shi', 'SHI54714' => 'shi', 'SMO011G0041' => 'smo', 'SMO146G0251' => 'smo', 'SMO160G0004' => 'smo', 'SMO174G0057' => 'smo', 'SMO244G0089' => 'smo', 'SMO296G0011' => 'smo', 'Solyc01g091280.3' => 'sly', 'Solyc05g047610.3' => 'sly', 'Solyc05g047640.3' => 'sly', 'Solyc05g055630.3' => 'sly', 'Solyc10g018160.2' => 'sly', 'Solyc10g084820.2' => 'sly', 'Solyc10g086565.2' => 'sly', 'Sopen01g037030' => 'spe', 'Sopen05g027920' => 'spe', 'Sopen05g034070' => 'spe', 'Sopen10g007260' => 'spe', 'Sopen10g034260' => 'spe', 'Sopen10g035950' => 'spe', 'Sp3g07710' => 'spa', 'Sp4g27420' => 'spa', 'Sp5g02450' => 'spa', 'Sp6g01280' => 'spa', 'Sp6g38480' => 'spa', 'Sp7g20780' => 'spa', 'TAR374G1413' => 'tar', 'TAR623G1777' => 'tar', 'TAR629G2370' => 'tar', 'TAR633G1759' => 'tar', 'TAR636G3387' => 'tar', 'THA.LOC104802447' => 'tha', 'THA.LOC104813916' => 'tha', 'THA.LOC104816423' => 'tha', 'THA.LOC104817246' => 'tha', 'THA.LOC104825895' => 'tha', 'Thecc.01G335200' => 'tca', 'Thecc.01G377400' => 'tca', 'Thecc.03G262200' => 'tca', 'Thecc.05G036800' => 'tca', 'Thecc.10G080500' => 'tca', 'Thecc.10G080800' => 'tca', 'Thhalv10001560m.g' => 'esa', 'Thhalv10006120m.g' => 'esa', 'Thhalv10014375m.g' => 'esa', 'Thhalv10021264m.g' => 'esa', 'Thhalv10028856m.g' => 'esa', 'TPR.G1914' => 'tpr', 'TPR.G4757' => 'tpr', 'TPR.G5595' => 'tpr', 'TWI14G0952' => 'twi', 'TWI14G1307' => 'twi', 'TWI38G2143' => 'twi', 'TWI59G0826' => 'twi', 'TWI77G0527' => 'twi', 'TWI81G0150' => 'twi', 'unitig_21.g21018' => 'ugi', 'unitig_26.g9725' => 'ugi', 'unitig_744.g24653' => 'ugi', 'unitig_749.g13778' => 'ugi', 'unitig_899.g15035' => 'ugi', 'vmacro04296' => 'vma', 'vmacro04852' => 'vma', 'vmacro13404' => 'vma', 'vmacro20169' => 'vma', 'vmacro21014' => 'vma', 'VMungo0331G0237' => 'vmu', 'VMungo0331G0706' => 'vmu', 'VMungo0331G1361' => 'vmu', 'VMungo0331G1489' => 'vmu', 'VMungo0540G1037' => 'vmu', 'VMungo0720G2487' => 'vmu', 'VMungo0720G2721' => 'vmu', 'Zm00001eb086860' => 'zma', 'Zm00001eb104760' => 'zma', 'Zm00001eb148220' => 'zma', 'Zm00001eb259030' => 'zma', 'Zm00001eb289590' => 'zma', 'Zm00001eb420150' => 'zma' ) $gf_id = 'HOM05D000968' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000968' ) $data_identifier = 'HOM05D000968' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 19, 'bol' => (int) 9, 'bra' => (int) 12, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 5, 'ccan' => (int) 7, 'cde' => (int) 5, 'cfa' => (int) 8, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 4, 'dca' => (int) 5, 'din' => (int) 5, 'dzi' => (int) 12, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 25, 'fve' => (int) 5, 'gma' => (int) 9, 'ghi' => (int) 18, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 7, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 5, 'sun' => (int) 2, 'lal' => (int) 9, 'lja' => (int) 5, 'lonja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 9, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 2, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 3, 'stu' => (int) 6, 'pvu' => (int) 4, 'ptr' => (int) 8, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 3, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 1, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 5, 'sas' => (int) 5, 'shi' => (int) 6, 'smo' => (int) 6, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 3, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420150' $species_info = array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ) $local_species = 'lal' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000968', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p31690' => 'bna', 'A03p36040' => 'bna', 'A03p53730' => 'bna', 'A04p01410' => 'bna', 'A05p05420' => 'bna', 'A05p39630' => 'bna', 'A05p39640' => 'bna', 'A09p00970' => 'bna', 'A09p53060' => 'bna', 'A10p31890' => 'bna', 'Aa31LG10G15040' => 'aar', 'Aa31LG1G21090' => 'aar', 'Aa31LG1G26900' => 'aar', 'Aa31LG3G1820' => 'aar', 'Aa31LG5G1100' => 'aar', 'Aa31LG6G4740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2265' => 'aag', 'Actinidia07998' => 'ach', 'Actinidia11266' => 'ach', 'Actinidia12682' => 'ach', 'Actinidia26479' => 'ach', 'Actinidia31406' => 'ach', 'Actinidia32437' => 'ach', 'Actinidia38862' => 'ach', 'Ah.05g174230' => 'amhyb', 'Ah.05g179070' => 'amhyb', 'Ah.05g179090' => 'amhyb', 'Ah.12g059950' => 'amhyb', 'AL3G20480' => 'aly', 'AL4G44520' => 'aly', 'AL5G43110' => 'aly', 'AL6G13890' => 'aly', 'AL6G52620' => 'aly', 'AL7G30830' => 'aly', 'Aqoxy1G00899' => 'aox', 'Aqoxy5G04333' => 'aox', 'Aqoxy7G00641' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3IZ0NN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4EF6AW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W9P8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79GA3M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C43NQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFCU6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G95YVJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCHK29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LU1UG8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX91RN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGB4B1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8DA0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9H7JI' => 'arhy', 'AT3G09320' => 'ath', 'AT3G60800' => 'ath', 'AT4G00840' => 'ath', 'AT4G22750' => 'ath', 'AT5G04270' => 'ath', 'ATR0090G003' => 'atr', 'ATR0559G349' => 'atr', 'ATR0680G261' => 'atr', 'ATR0810G048' => 'atr', 'Atru.chr12.831' => 'acertr', 'Atru.chr5.303' => 'acertr', 'Atru.chr5.748' => 'acertr', 'Atru.chr8.1999' => 'acertr', 'Atru.chr9.1436' => 'acertr', 'AUR62004211' => 'cqu', 'AUR62004548' => 'cqu', 'AUR62013637' => 'cqu', 'AUR62022662' => 'cqu', 'AUR62025777' => 'cqu', 'AUR62042386' => 'cqu', 'BcaB01g02310' => 'bca', 'BcaB01g06062' => 'bca', 'BcaB02g08975' => 'bca', 'BcaB02g08980' => 'bca', 'BcaC01g04228' => 'bca', 'BcaC01g06830' => 'bca', 'BcaC02g10186' => 'bca', 'BcaC02g12214' => 'bca', 'BcaC04g24101' => 'bca', 'BcaC05g29520' => 'bca', 'BcaC05g29661' => 'bca', 'BcaC06g32130' => 'bca', 'BcaC06g32131' => 'bca', 'BcaC07g40601' => 'bca', 'BcaC07g42641' => 'bca', 'BcaNung01038' => 'bca', 'BcaNung01676' => 'bca', 'BcaNung02480' => 'bca', 'BcaNung07376' => 'bca', 'BolC3t16146H' => 'bol', 'BolC3t16637H' => 'bol', 'BolC4t22257H' => 'bol', 'BolC4t24728H' => 'bol', 'BolC5t34517H' => 'bol', 'BolC7t45703H' => 'bol', 'BolC8t51166H' => 'bol', 'BolC9t53038H' => 'bol', 'BolC9t60000H' => 'bol', 'BraA01t01345Z' => 'bra', 'BraA01t01346Z' => 'bra', 'BraA01t01348Z' => 'bra', 'BraA03t12347Z' => 'bra', 'BraA03t12775Z' => 'bra', 'BraA03t14439Z' => 'bra', 'BraA04t15860Z' => 'bra', 'BraA05t19511Z' => 'bra', 'BraA05t22746Z' => 'bra', 'BraA09t35767Z' => 'bra', 'BraA09t40732Z' => 'bra', 'BraA10t45233Z' => 'bra', 'C03p38720' => 'bna', 'C03p43680' => 'bna', 'C04p06350' => 'bna', 'C04p31800' => 'bna', 'C05p58680' => 'bna', 'C07p52110' => 'bna', 'C08p35760' => 'bna', 'C09p01050' => 'bna', 'C09p72600' => 'bna', 'CAN.G106.2' => 'can', 'CAN.G1482.1' => 'can', 'CAN.G324.12' => 'can', 'CAN.G388.20' => 'can', 'CAN.G412.7' => 'can', 'CAN.G694.32' => 'can', 'CAN.G92.12' => 'can', 'CANSAT11G2353' => 'cansat', 'CANSAT21G1398' => 'cansat', 'CANSAT56G2456' => 'cansat', 'CANSAT56G3031' => 'cansat', 'CANSAT56G4539' => 'cansat', 'CARHR083680' => 'chi', 'CARHR171190' => 'chi', 'CARHR209010' => 'chi', 'CARHR229680' => 'chi', 'CARHR249490' => 'chi', 'Carub.0003s0844' => 'cru', 'Carub.0005s2755' => 'cru', 'Carub.0006s0322' => 'cru', 'Carub.0006s3586' => 'cru', 'Carub.0007s1855' => 'cru', 'Ca_07808_v3' => 'car', 'Ca_09535_v3' => 'car', 'Ca_10548_v3' => 'car', 'Ca_19913_v3' => 'car', 'Ca_19916_v3' => 'car', 'Ca_19975_v3' => 'car', 'CBR_g22876' => 'cbr', 'CBR_g22879' => 'cbr', 'CBR_g38491' => 'cbr', 'CBR_g54185' => 'cbr', 'CBR_g54190' => 'cbr', 'Cc02_g11020' => 'ccan', 'Cc02_g23920' => 'ccan', 'Cc02_g39860' => 'ccan', 'Cc02_g39870' => 'ccan', 'Cc03_g06760' => 'ccan', 'Cc06_g02450' => 'ccan', 'Cc09_g09450' => 'ccan', 'CDE02G1959' => 'cde', 'CDE04G0600' => 'cde', 'CDE07G1996' => 'cde', 'CDE07G2078' => 'cde', 'CDE11G0611' => 'cde', 'Cfa001683' => 'cfa', 'Cfa001734' => 'cfa', 'Cfa001737' => 'cfa', 'Cfa003751' => 'cfa', 'Cfa012019' => 'cfa', 'Cfa017353' => 'cfa', 'Cfa017732' => 'cfa', 'Cfa022464' => 'cfa', 'Ciclev10012400m.g' => 'ccl', 'Ciclev10021242m.g' => 'ccl', 'Ciclev10021302m.g' => 'ccl', 'Ciclev10021463m.g' => 'ccl', 'Ciclev10032359m.g' => 'ccl', 'CiPaw.01G081000' => 'cil', 'CiPaw.01G262500' => 'cil', 'CiPaw.01G269800' => 'cil', 'CiPaw.02G168400' => 'cil', 'CiPaw.05G119500' => 'cil', 'CiPaw.11G147300' => 'cil', 'ClCG01G003630' => 'cla', 'ClCG05G000510' => 'cla', 'ClCG05G002300' => 'cla', 'ClCG08G007650' => 'cla', 'ClCG10G021250' => 'cla', 'COL.COLO4_06218' => 'col', 'COL.COLO4_12538' => 'col', 'COL.COLO4_14775' => 'col', 'COL.COLO4_23875' => 'col', 'Cpa.g.sc141.16' => 'cpa', 'Cpa.g.sc169.16' => 'cpa', 'Cpa.g.sc244.4' => 'cpa', 'Cpa.g.sc244.5' => 'cpa', 'Cpa.g.sc29.87' => 'cpa', 'Cpa.g.sc53.115' => 'cpa', 'Cre03.g207502' => 'cre', 'Cre06.g277000' => 'cre', 'Cre09.g394050' => 'cre', 'CsaV3_3G007680' => 'csa', 'CsaV3_3G009710' => 'csa', 'CsaV3_3G034790' => 'csa', 'CsaV3_5G003750' => 'csa', 'CsaV3_6G036620' => 'csa', 'CSS0002288' => 'camsi', 'CSS0011250' => 'camsi', 'CSS0021619' => 'camsi', 'CSS0046701' => 'camsi', 'DCAR_006420' => 'dca', 'DCAR_006865' => 'dca', 'DCAR_008558' => 'dca', 'DCAR_028754' => 'dca', 'DCAR_028755' => 'dca', 'Dinv31218' => 'din', 'Dinv32371' => 'din', 'Dinv34250' => 'din', 'Dinv37156' => 'din', 'Dinv43704' => 'din', 'Duzib093G1811' => 'dzi', 'Duzib106G1622' => 'dzi', 'Duzib114G0504' => 'dzi', 'Duzib128G0338' => 'dzi', 'Duzib128G1577' => 'dzi', 'Duzib133G0104' => 'dzi', 'Duzib133G1080' => 'dzi', 'Duzib138G0324' => 'dzi', 'Duzib138G0394' => 'dzi', 'Duzib205G0122' => 'dzi', 'Duzib268G1020' => 'dzi', 'Duzib268G1359' => 'dzi', 'ECA232G3929' => 'eca', 'ECA236G2210' => 'eca', 'ECA236G2287' => 'eca', 'ECA240G4568' => 'eca', 'ECA247G0894' => 'eca', 'EL10Ac1g00200' => 'bvu', 'EL10Ac1g00886' => 'bvu', 'EL10As1g23091' => 'bvu', 'EL10As1g23092' => 'bvu', 'Eucgr.A01284' => 'egr', 'Eucgr.A01285' => 'egr', 'Eucgr.D02456' => 'egr', 'Eucgr.E00018' => 'egr', 'Eucgr.E01439' => 'egr', 'Eucgr.G02859' => 'egr', 'FAN01G0168' => 'fan', 'FAN01G0453' => 'fan', 'FAN01G2761' => 'fan', 'FAN02G1239' => 'fan', 'FAN03G0645' => 'fan', 'FAN03G2707' => 'fan', 'FAN03G2978' => 'fan', 'FAN04G0227' => 'fan', 'FAN06G0091' => 'fan', 'FAN06G1418' => 'fan', 'FAN06G1512' => 'fan', 'FAN06G1986' => 'fan', 'FAN06G2905' => 'fan', 'FAN06G4325' => 'fan', 'FAN08G0033' => 'fan', 'FAN09G0642' => 'fan', 'FAN10G1763' => 'fan', 'FAN10G2026' => 'fan', 'FAN10G2513' => 'fan', 'FAN10G3402' => 'fan', 'FAN10G3564' => 'fan', 'FAN10G3987' => 'fan', 'FAN13G1490' => 'fan', 'FAN14G5857' => 'fan', 'FAN18G1188' => 'fan', 'FvH4_5g00750' => 'fve', 'FvH4_6g13410' => 'fve', 'FvH4_7g11740' => 'fve', 'FvH4_7g17410' => 'fve', 'FvH4_7g18860' => 'fve', 'Glyma.01G099100' => 'gma', 'Glyma.01G142300' => 'gma', 'Glyma.03G025500' => 'gma', 'Glyma.03G069700' => 'gma', 'Glyma.03G260000' => 'gma', 'Glyma.09G269800' => 'gma', 'Glyma.10G208700' => 'gma', 'Glyma.18G220400' => 'gma', 'Glyma.20G182000' => 'gma', 'Gohir.A01G221726' => 'ghi', 'Gohir.A07G134600' => 'ghi', 'Gohir.A07G146000' => 'ghi', 'Gohir.A08G173900' => 'ghi', 'Gohir.A09G194900' => 'ghi', 'Gohir.A10G204100' => 'ghi', 'Gohir.A11G080600' => 'ghi', 'Gohir.A11G327500' => 'ghi', 'Gohir.A12G101800' => 'ghi', 'Gohir.D01G211200' => 'ghi', 'Gohir.D07G139200' => 'ghi', 'Gohir.D07G152100' => 'ghi', 'Gohir.D08G192600' => 'ghi', 'Gohir.D09G189200' => 'ghi', 'Gohir.D10G212000' => 'ghi', 'Gohir.D11G085200' => 'ghi', 'Gohir.D11G346400' => 'ghi', 'Gohir.D12G104800' => 'ghi', 'Gorai.001G151300' => 'gra', 'Gorai.001G174100' => 'gra', 'Gorai.002G257000' => 'gra', 'Gorai.004G202600' => 'gra', 'Gorai.007G090900' => 'gra', 'Gorai.007G376700' => 'gra', 'Gorai.008G114100' => 'gra', 'Gorai.011G237900' => 'gra', 'GSVIVG01005450001' => 'vvi', 'GSVIVG01016232001' => 'vvi', 'GSVIVG01026157001' => 'vvi', 'GSVIVG01027419001' => 'vvi', 'GSVIVG01027631001' => 'vvi', 'GSVIVG01034143001' => 'vvi', 'HanXRQChr03g0093921' => 'han', 'HanXRQChr04g0120001' => 'han', 'HanXRQChr04g0122561' => 'han', 'HanXRQChr09g0246851' => 'han', 'HanXRQChr10g0293311' => 'han', 'HanXRQChr13g0425231' => 'han', 'HanXRQChr16g0532571' => 'han', 'Haze_09050' => 'cav', 'Haze_15715' => 'cav', 'Haze_15716' => 'cav', 'Haze_16803' => 'cav', 'Haze_16850' => 'cav', 'Hma1.2p1_0301F.1_g118655' => 'hma', 'Hma1.2p1_0309F.1_g120590' => 'hma', 'Hma1.2p1_0936F.1_g238900' => 'hma', 'Hma1.2p1_3552F.1_g336740' => 'hma', 'HPP92_003520' => 'vpl', 'HPP92_006628' => 'vpl', 'HPP92_006645' => 'vpl', 'HPP92_014669' => 'vpl', 'HPP92_015077' => 'vpl', 'Hund16742' => 'sun', 'Hund17022' => 'sun', 'Lalb_Chr02g0152131' => 'lal', 'Lalb_Chr05g0225371' => 'lal', 'Lalb_Chr07g0189841' => 'lal', 'Lalb_Chr07g0192961' => 'lal', 'Lalb_Chr12g0208221' => 'lal', 'Lalb_Chr13g0291211' => 'lal', 'Lalb_Chr13g0291781' => 'lal', 'Lalb_Chr18g0044651' => 'lal', 'Lalb_Chr21g0313731' => 'lal', 'Lj1g0022533' => 'lja', 'Lj2A18T50' => 'lonja', 'Lj2A92G93' => 'lonja', 'Lj3A965T73' => 'lonja', 'Lj3g0000673' => 'lja', 'Lj3g0002666' => 'lja', 'Lj4g0016985' => 'lja', 'Lj5g0003625' => 'lja', 'Lj7A529G36' => 'lonja', 'Lj9A569T49' => 'lonja', 'Lj9A604T63' => 'lonja', 'Lsat_1_v5_gn_3_132060' => 'lsa', 'Lsat_1_v5_gn_4_68941' => 'lsa', 'Lsat_1_v5_gn_5_95580' => 'lsa', 'Lsat_1_v5_gn_7_161' => 'lsa', 'Lsat_1_v5_gn_7_7041' => 'lsa', 'Lsat_1_v5_gn_9_33481' => 'lsa', 'Lsat_1_v5_gn_9_68260' => 'lsa', 'Manes.01G073100' => 'mes', 'Manes.01G266300' => 'mes', 'Manes.02G033300' => 'mes', 'Manes.05G017900' => 'mes', 'Manes.05G046100' => 'mes', 'Manes.08G080900' => 'mes', 'Manes.10G049400' => 'mes', 'Mapoly0009s0186' => 'mpo', 'Mapoly0036s0118' => 'mpo', 'Mapoly0101s0046' => 'mpo', 'MBI04_g30218_MAGBIO' => 'mbi', 'MBI04_g35564_MAGBIO' => 'mbi', 'MBI12_g34011_MAGBIO' => 'mbi', 'MBI14_g04655_MAGBIO' => 'mbi', 'MCO07G653' => 'mco', 'MCO10G173' => 'mco', 'MD01G1087100' => 'mdo', 'MD01G1104200' => 'mdo', 'MD02G1205100' => 'mdo', 'MD04G1079200' => 'mdo', 'MD04G1131400' => 'mdo', 'MD07G1121600' => 'mdo', 'MD07G1157300' => 'mdo', 'MD07G1171000' => 'mdo', 'MD12G1144500' => 'mdo', 'Medtr1g094610' => 'mtr', 'Medtr4g021795' => 'mtr', 'Medtr4g023760' => 'mtr', 'Medtr7g118050' => 'mtr', 'MELO3C005582.2' => 'cme', 'MELO3C005989.2' => 'cme', 'MELO3C006192.2' => 'cme', 'MELO3C009248.2' => 'cme', 'MELO3C019817.2' => 'cme', 'Migut.B01625' => 'egut', 'Migut.B01915' => 'egut', 'Migut.F01721' => 'egut', 'Migut.J00314' => 'egut', 'MSTRG.20742' => 'ama', 'MSTRG.8134' => 'ama', 'Nitab4.5_0000096g0010' => 'nta', 'Nitab4.5_0000202g0030' => 'nta', 'Nitab4.5_0000216g0370' => 'nta', 'Nitab4.5_0000457g0230' => 'nta', 'Nitab4.5_0001702g0170' => 'nta', 'Nitab4.5_0003607g0010' => 'nta', 'Nitab4.5_0004917g0020' => 'nta', 'Nitab4.5_0007059g0010' => 'nta', 'Nitab4.5_0007184g0010' => 'nta', 'Nitab4.5_0007346g0020' => 'nta', 'Nn1g00410' => 'nnu', 'Nn1g01252' => 'nnu', 'Nn2g11168' => 'nnu', 'Nn2g13403' => 'nnu', 'Nn2g13760' => 'nnu', 'Nn4g26380' => 'nnu', 'Oeu000806.2' => 'oeu', 'Oeu005788.1' => 'oeu', 'Oeu006900.3' => 'oeu', 'Oeu007797.1' => 'oeu', 'Oeu011932.1' => 'oeu', 'Oeu022739.1' => 'oeu', 'Oeu037918.1' => 'oeu', 'Oeu055490.2' => 'oeu', 'Os01g0844400' => 'osa', 'Os02g0819100' => 'osa', 'Os03g0804300' => 'osa', 'Os05g0458000' => 'osa', 'Os07g0467800' => 'osa', 'Os12g0602200' => 'osa', 'Peaxi162Scf00013g03444' => 'pax', 'Peaxi162Scf00094g01120' => 'pax', 'Peaxi162Scf00191g01211' => 'pax', 'Peaxi162Scf00238g01110' => 'pax', 'Peaxi162Scf00330g00719' => 'pax', 'Peaxi162Scf00627g00018' => 'pax', 'PGR031G2686' => 'pgr', 'PGR042G0809' => 'pgr', 'PGR142G0193' => 'pgr', 'PGSC0003DMG400011066' => 'stu', 'PGSC0003DMG400012041' => 'stu', 'PGSC0003DMG400013678' => 'stu', 'PGSC0003DMG400023477' => 'stu', 'PGSC0003DMG400025956' => 'stu', 'PGSC0003DMG401019151' => 'stu', 'Phvul.006G116400' => 'pvu', 'Phvul.007G097300' => 'pvu', 'Phvul.010G015000' => 'pvu', 'Phvul.010G083900' => 'pvu', 'Potri.001G117100' => 'ptr', 'Potri.002G147300' => 'ptr', 'Potri.003G115600' => 'ptr', 'Potri.006G087400' => 'ptr', 'Potri.010G226100' => 'ptr', 'Potri.014G069200' => 'ptr', 'Potri.014G104000' => 'ptr', 'Potri.016G100200' => 'ptr', 'Pp3c10_20450' => 'ppa', 'Pp3c1_42400' => 'ppa', 'Pp3c3_24390' => 'ppa', 'Pp3c3_2860' => 'ppa', 'PRCOL_00003193' => 'pco', 'Prupe.2G144500' => 'ppe', 'Prupe.2G195700' => 'ppe', 'Prupe.2G209800' => 'ppe', 'Prupe.5G080000' => 'ppe', 'Prupe.6G257900' => 'ppe', 'Psat3g001160' => 'psa', 'Psat6g181880' => 'psa', 'Psat7g233720' => 'psa', 'PSO063G7587' => 'pso', 'PSO339G2145' => 'pso', 'PSO339G3369' => 'pso', 'PSO478G2747' => 'pso', 'PSO513G0140' => 'pso', 'PSO782G1614' => 'pso', 'PSO782G4889' => 'pso', 'PSO782G5485' => 'pso', 'PSO801G0241' => 'pso', 'QL07p048854' => 'qlo', 'QL08p046745' => 'qlo', 'QL08p052606' => 'qlo', 'QL08p053414' => 'qlo', 'QL08p054868' => 'qlo', 'RcHm_v2.0_Chr1g0350251' => 'rch', 'RcHm_v2.0_Chr1g0360851' => 'rch', 'RcHm_v2.0_Chr1g0362791' => 'rch', 'RcHm_v2.0_Chr3g0466281' => 'rch', 'RcHm_v2.0_Chr7g0201481' => 'rch', 'Rhsim01G0148600' => 'rsi', 'Rhsim05G0194400' => 'rsi', 'Rhsim07G0000700' => 'rsi', 'Rhsim07G0000800' => 'rsi', 'Rhsim07G0027900' => 'rsi', 'Rhsim09G0149500' => 'rsi', 'RhsimUnG0186900' => 'rsi', 'Sabra01G0089900' => 'sbr', 'Sabra02G0114700' => 'sbr', 'Sabra02G0116300' => 'sbr', 'Sabra03G0080100' => 'sbr', 'Sabra08G0024300' => 'sbr', 'Sabra10G0174300' => 'sbr', 'Sabra14G0048900' => 'sbr', 'Sabra14G0076500' => 'sbr', 'SalBow5G2513' => 'sbo', 'Sc01g0002300' => 'sci', 'Sc01g0004450' => 'sci', 'Sc06g0001680' => 'sci', 'Sc23g0003580' => 'sci', 'Sed0000913' => 'sed', 'Sed0001655' => 'sed', 'Sed0007745' => 'sed', 'Sed0010951' => 'sed', 'Sed0017599' => 'sed', 'Sed0021405' => 'sed', 'Sed0022810' => 'sed', 'SEGI_07099' => 'sgi', 'SEGI_11931' => 'sgi', 'SEGI_13187' => 'sgi', 'SEGI_29958' => 'sgi', 'SEGI_36351' => 'sgi', 'SGA_v2.0_scaffold126G33770' => 'sas', 'SGA_v2.0_scaffold153G37003' => 'sas', 'SGA_v2.0_scaffold2G01359' => 'sas', 'SGA_v2.0_scaffold5G03064' => 'sas', 'SGA_v2.0_scaffold95G28903' => 'sas', 'SHI12701' => 'shi', 'SHI26410' => 'shi', 'SHI38997' => 'shi', 'SHI53759' => 'shi', 'SHI53886' => 'shi', 'SHI54714' => 'shi', 'SMO011G0041' => 'smo', 'SMO146G0251' => 'smo', 'SMO160G0004' => 'smo', 'SMO174G0057' => 'smo', 'SMO244G0089' => 'smo', 'SMO296G0011' => 'smo', 'Solyc01g091280.3' => 'sly', 'Solyc05g047610.3' => 'sly', 'Solyc05g047640.3' => 'sly', 'Solyc05g055630.3' => 'sly', 'Solyc10g018160.2' => 'sly', 'Solyc10g084820.2' => 'sly', 'Solyc10g086565.2' => 'sly', 'Sopen01g037030' => 'spe', 'Sopen05g027920' => 'spe', 'Sopen05g034070' => 'spe', 'Sopen10g007260' => 'spe', 'Sopen10g034260' => 'spe', 'Sopen10g035950' => 'spe', 'Sp3g07710' => 'spa', 'Sp4g27420' => 'spa', 'Sp5g02450' => 'spa', 'Sp6g01280' => 'spa', 'Sp6g38480' => 'spa', 'Sp7g20780' => 'spa', 'TAR374G1413' => 'tar', 'TAR623G1777' => 'tar', 'TAR629G2370' => 'tar', 'TAR633G1759' => 'tar', 'TAR636G3387' => 'tar', 'THA.LOC104802447' => 'tha', 'THA.LOC104813916' => 'tha', 'THA.LOC104816423' => 'tha', 'THA.LOC104817246' => 'tha', 'THA.LOC104825895' => 'tha', 'Thecc.01G335200' => 'tca', 'Thecc.01G377400' => 'tca', 'Thecc.03G262200' => 'tca', 'Thecc.05G036800' => 'tca', 'Thecc.10G080500' => 'tca', 'Thecc.10G080800' => 'tca', 'Thhalv10001560m.g' => 'esa', 'Thhalv10006120m.g' => 'esa', 'Thhalv10014375m.g' => 'esa', 'Thhalv10021264m.g' => 'esa', 'Thhalv10028856m.g' => 'esa', 'TPR.G1914' => 'tpr', 'TPR.G4757' => 'tpr', 'TPR.G5595' => 'tpr', 'TWI14G0952' => 'twi', 'TWI14G1307' => 'twi', 'TWI38G2143' => 'twi', 'TWI59G0826' => 'twi', 'TWI77G0527' => 'twi', 'TWI81G0150' => 'twi', 'unitig_21.g21018' => 'ugi', 'unitig_26.g9725' => 'ugi', 'unitig_744.g24653' => 'ugi', 'unitig_749.g13778' => 'ugi', 'unitig_899.g15035' => 'ugi', 'vmacro04296' => 'vma', 'vmacro04852' => 'vma', 'vmacro13404' => 'vma', 'vmacro20169' => 'vma', 'vmacro21014' => 'vma', 'VMungo0331G0237' => 'vmu', 'VMungo0331G0706' => 'vmu', 'VMungo0331G1361' => 'vmu', 'VMungo0331G1489' => 'vmu', 'VMungo0540G1037' => 'vmu', 'VMungo0720G2487' => 'vmu', 'VMungo0720G2721' => 'vmu', 'Zm00001eb086860' => 'zma', 'Zm00001eb104760' => 'zma', 'Zm00001eb148220' => 'zma', 'Zm00001eb259030' => 'zma', 'Zm00001eb289590' => 'zma', 'Zm00001eb420150' => 'zma' ), 'gf_id' => 'HOM05D000968', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000968' ), 'data_identifier' => 'HOM05D000968', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000968', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p31690' => 'bna', 'A03p36040' => 'bna', 'A03p53730' => 'bna', 'A04p01410' => 'bna', 'A05p05420' => 'bna', 'A05p39630' => 'bna', 'A05p39640' => 'bna', 'A09p00970' => 'bna', 'A09p53060' => 'bna', 'A10p31890' => 'bna', 'Aa31LG10G15040' => 'aar', 'Aa31LG1G21090' => 'aar', 'Aa31LG1G26900' => 'aar', 'Aa31LG3G1820' => 'aar', 'Aa31LG5G1100' => 'aar', 'Aa31LG6G4740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2265' => 'aag', 'Actinidia07998' => 'ach', 'Actinidia11266' => 'ach', 'Actinidia12682' => 'ach', 'Actinidia26479' => 'ach', 'Actinidia31406' => 'ach', 'Actinidia32437' => 'ach', 'Actinidia38862' => 'ach', 'Ah.05g174230' => 'amhyb', 'Ah.05g179070' => 'amhyb', 'Ah.05g179090' => 'amhyb', 'Ah.12g059950' => 'amhyb', 'AL3G20480' => 'aly', 'AL4G44520' => 'aly', 'AL5G43110' => 'aly', 'AL6G13890' => 'aly', 'AL6G52620' => 'aly', 'AL7G30830' => 'aly', 'Aqoxy1G00899' => 'aox', 'Aqoxy5G04333' => 'aox', 'Aqoxy7G00641' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3IZ0NN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4EF6AW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W9P8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79GA3M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C43NQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFCU6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G95YVJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCHK29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LU1UG8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX91RN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGB4B1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8DA0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9H7JI' => 'arhy', 'AT3G09320' => 'ath', 'AT3G60800' => 'ath', 'AT4G00840' => 'ath', 'AT4G22750' => 'ath', 'AT5G04270' => 'ath', 'ATR0090G003' => 'atr', 'ATR0559G349' => 'atr', 'ATR0680G261' => 'atr', 'ATR0810G048' => 'atr', 'Atru.chr12.831' => 'acertr', 'Atru.chr5.303' => 'acertr', 'Atru.chr5.748' => 'acertr', 'Atru.chr8.1999' => 'acertr', 'Atru.chr9.1436' => 'acertr', 'AUR62004211' => 'cqu', 'AUR62004548' => 'cqu', 'AUR62013637' => 'cqu', 'AUR62022662' => 'cqu', 'AUR62025777' => 'cqu', 'AUR62042386' => 'cqu', 'BcaB01g02310' => 'bca', 'BcaB01g06062' => 'bca', 'BcaB02g08975' => 'bca', 'BcaB02g08980' => 'bca', 'BcaC01g04228' => 'bca', 'BcaC01g06830' => 'bca', 'BcaC02g10186' => 'bca', 'BcaC02g12214' => 'bca', 'BcaC04g24101' => 'bca', 'BcaC05g29520' => 'bca', 'BcaC05g29661' => 'bca', 'BcaC06g32130' => 'bca', 'BcaC06g32131' => 'bca', 'BcaC07g40601' => 'bca', 'BcaC07g42641' => 'bca', 'BcaNung01038' => 'bca', 'BcaNung01676' => 'bca', 'BcaNung02480' => 'bca', 'BcaNung07376' => 'bca', 'BolC3t16146H' => 'bol', 'BolC3t16637H' => 'bol', 'BolC4t22257H' => 'bol', 'BolC4t24728H' => 'bol', 'BolC5t34517H' => 'bol', 'BolC7t45703H' => 'bol', 'BolC8t51166H' => 'bol', 'BolC9t53038H' => 'bol', 'BolC9t60000H' => 'bol', 'BraA01t01345Z' => 'bra', 'BraA01t01346Z' => 'bra', 'BraA01t01348Z' => 'bra', 'BraA03t12347Z' => 'bra', 'BraA03t12775Z' => 'bra', 'BraA03t14439Z' => 'bra', 'BraA04t15860Z' => 'bra', 'BraA05t19511Z' => 'bra', 'BraA05t22746Z' => 'bra', 'BraA09t35767Z' => 'bra', 'BraA09t40732Z' => 'bra', 'BraA10t45233Z' => 'bra', 'C03p38720' => 'bna', 'C03p43680' => 'bna', 'C04p06350' => 'bna', 'C04p31800' => 'bna', 'C05p58680' => 'bna', 'C07p52110' => 'bna', 'C08p35760' => 'bna', 'C09p01050' => 'bna', 'C09p72600' => 'bna', 'CAN.G106.2' => 'can', 'CAN.G1482.1' => 'can', 'CAN.G324.12' => 'can', 'CAN.G388.20' => 'can', 'CAN.G412.7' => 'can', 'CAN.G694.32' => 'can', 'CAN.G92.12' => 'can', 'CANSAT11G2353' => 'cansat', 'CANSAT21G1398' => 'cansat', 'CANSAT56G2456' => 'cansat', 'CANSAT56G3031' => 'cansat', 'CANSAT56G4539' => 'cansat', 'CARHR083680' => 'chi', 'CARHR171190' => 'chi', 'CARHR209010' => 'chi', 'CARHR229680' => 'chi', 'CARHR249490' => 'chi', 'Carub.0003s0844' => 'cru', 'Carub.0005s2755' => 'cru', 'Carub.0006s0322' => 'cru', 'Carub.0006s3586' => 'cru', 'Carub.0007s1855' => 'cru', 'Ca_07808_v3' => 'car', 'Ca_09535_v3' => 'car', 'Ca_10548_v3' => 'car', 'Ca_19913_v3' => 'car', 'Ca_19916_v3' => 'car', 'Ca_19975_v3' => 'car', 'CBR_g22876' => 'cbr', 'CBR_g22879' => 'cbr', 'CBR_g38491' => 'cbr', 'CBR_g54185' => 'cbr', 'CBR_g54190' => 'cbr', 'Cc02_g11020' => 'ccan', 'Cc02_g23920' => 'ccan', 'Cc02_g39860' => 'ccan', 'Cc02_g39870' => 'ccan', 'Cc03_g06760' => 'ccan', 'Cc06_g02450' => 'ccan', 'Cc09_g09450' => 'ccan', 'CDE02G1959' => 'cde', 'CDE04G0600' => 'cde', 'CDE07G1996' => 'cde', 'CDE07G2078' => 'cde', 'CDE11G0611' => 'cde', 'Cfa001683' => 'cfa', 'Cfa001734' => 'cfa', 'Cfa001737' => 'cfa', 'Cfa003751' => 'cfa', 'Cfa012019' => 'cfa', 'Cfa017353' => 'cfa', 'Cfa017732' => 'cfa', 'Cfa022464' => 'cfa', 'Ciclev10012400m.g' => 'ccl', 'Ciclev10021242m.g' => 'ccl', 'Ciclev10021302m.g' => 'ccl', 'Ciclev10021463m.g' => 'ccl', 'Ciclev10032359m.g' => 'ccl', 'CiPaw.01G081000' => 'cil', 'CiPaw.01G262500' => 'cil', 'CiPaw.01G269800' => 'cil', 'CiPaw.02G168400' => 'cil', 'CiPaw.05G119500' => 'cil', 'CiPaw.11G147300' => 'cil', 'ClCG01G003630' => 'cla', 'ClCG05G000510' => 'cla', 'ClCG05G002300' => 'cla', 'ClCG08G007650' => 'cla', 'ClCG10G021250' => 'cla', 'COL.COLO4_06218' => 'col', 'COL.COLO4_12538' => 'col', 'COL.COLO4_14775' => 'col', 'COL.COLO4_23875' => 'col', 'Cpa.g.sc141.16' => 'cpa', 'Cpa.g.sc169.16' => 'cpa', 'Cpa.g.sc244.4' => 'cpa', 'Cpa.g.sc244.5' => 'cpa', 'Cpa.g.sc29.87' => 'cpa', 'Cpa.g.sc53.115' => 'cpa', 'Cre03.g207502' => 'cre', 'Cre06.g277000' => 'cre', 'Cre09.g394050' => 'cre', 'CsaV3_3G007680' => 'csa', 'CsaV3_3G009710' => 'csa', 'CsaV3_3G034790' => 'csa', 'CsaV3_5G003750' => 'csa', 'CsaV3_6G036620' => 'csa', 'CSS0002288' => 'camsi', 'CSS0011250' => 'camsi', 'CSS0021619' => 'camsi', 'CSS0046701' => 'camsi', 'DCAR_006420' => 'dca', 'DCAR_006865' => 'dca', 'DCAR_008558' => 'dca', 'DCAR_028754' => 'dca', 'DCAR_028755' => 'dca', 'Dinv31218' => 'din', 'Dinv32371' => 'din', 'Dinv34250' => 'din', 'Dinv37156' => 'din', 'Dinv43704' => 'din', 'Duzib093G1811' => 'dzi', 'Duzib106G1622' => 'dzi', 'Duzib114G0504' => 'dzi', 'Duzib128G0338' => 'dzi', 'Duzib128G1577' => 'dzi', 'Duzib133G0104' => 'dzi', 'Duzib133G1080' => 'dzi', 'Duzib138G0324' => 'dzi', 'Duzib138G0394' => 'dzi', 'Duzib205G0122' => 'dzi', 'Duzib268G1020' => 'dzi', 'Duzib268G1359' => 'dzi', 'ECA232G3929' => 'eca', 'ECA236G2210' => 'eca', 'ECA236G2287' => 'eca', 'ECA240G4568' => 'eca', 'ECA247G0894' => 'eca', 'EL10Ac1g00200' => 'bvu', 'EL10Ac1g00886' => 'bvu', 'EL10As1g23091' => 'bvu', 'EL10As1g23092' => 'bvu', 'Eucgr.A01284' => 'egr', 'Eucgr.A01285' => 'egr', 'Eucgr.D02456' => 'egr', 'Eucgr.E00018' => 'egr', 'Eucgr.E01439' => 'egr', 'Eucgr.G02859' => 'egr', 'FAN01G0168' => 'fan', 'FAN01G0453' => 'fan', 'FAN01G2761' => 'fan', 'FAN02G1239' => 'fan', 'FAN03G0645' => 'fan', 'FAN03G2707' => 'fan', 'FAN03G2978' => 'fan', 'FAN04G0227' => 'fan', 'FAN06G0091' => 'fan', 'FAN06G1418' => 'fan', 'FAN06G1512' => 'fan', 'FAN06G1986' => 'fan', 'FAN06G2905' => 'fan', 'FAN06G4325' => 'fan', 'FAN08G0033' => 'fan', 'FAN09G0642' => 'fan', 'FAN10G1763' => 'fan', 'FAN10G2026' => 'fan', 'FAN10G2513' => 'fan', 'FAN10G3402' => 'fan', 'FAN10G3564' => 'fan', 'FAN10G3987' => 'fan', 'FAN13G1490' => 'fan', 'FAN14G5857' => 'fan', 'FAN18G1188' => 'fan', 'FvH4_5g00750' => 'fve', 'FvH4_6g13410' => 'fve', 'FvH4_7g11740' => 'fve', 'FvH4_7g17410' => 'fve', 'FvH4_7g18860' => 'fve', 'Glyma.01G099100' => 'gma', 'Glyma.01G142300' => 'gma', 'Glyma.03G025500' => 'gma', 'Glyma.03G069700' => 'gma', 'Glyma.03G260000' => 'gma', 'Glyma.09G269800' => 'gma', 'Glyma.10G208700' => 'gma', 'Glyma.18G220400' => 'gma', 'Glyma.20G182000' => 'gma', 'Gohir.A01G221726' => 'ghi', 'Gohir.A07G134600' => 'ghi', 'Gohir.A07G146000' => 'ghi', 'Gohir.A08G173900' => 'ghi', 'Gohir.A09G194900' => 'ghi', 'Gohir.A10G204100' => 'ghi', 'Gohir.A11G080600' => 'ghi', 'Gohir.A11G327500' => 'ghi', 'Gohir.A12G101800' => 'ghi', 'Gohir.D01G211200' => 'ghi', 'Gohir.D07G139200' => 'ghi', 'Gohir.D07G152100' => 'ghi', 'Gohir.D08G192600' => 'ghi', 'Gohir.D09G189200' => 'ghi', 'Gohir.D10G212000' => 'ghi', 'Gohir.D11G085200' => 'ghi', 'Gohir.D11G346400' => 'ghi', 'Gohir.D12G104800' => 'ghi', 'Gorai.001G151300' => 'gra', 'Gorai.001G174100' => 'gra', 'Gorai.002G257000' => 'gra', 'Gorai.004G202600' => 'gra', 'Gorai.007G090900' => 'gra', 'Gorai.007G376700' => 'gra', 'Gorai.008G114100' => 'gra', 'Gorai.011G237900' => 'gra', 'GSVIVG01005450001' => 'vvi', 'GSVIVG01016232001' => 'vvi', 'GSVIVG01026157001' => 'vvi', 'GSVIVG01027419001' => 'vvi', 'GSVIVG01027631001' => 'vvi', 'GSVIVG01034143001' => 'vvi', 'HanXRQChr03g0093921' => 'han', 'HanXRQChr04g0120001' => 'han', 'HanXRQChr04g0122561' => 'han', 'HanXRQChr09g0246851' => 'han', 'HanXRQChr10g0293311' => 'han', 'HanXRQChr13g0425231' => 'han', 'HanXRQChr16g0532571' => 'han', 'Haze_09050' => 'cav', 'Haze_15715' => 'cav', 'Haze_15716' => 'cav', 'Haze_16803' => 'cav', 'Haze_16850' => 'cav', 'Hma1.2p1_0301F.1_g118655' => 'hma', 'Hma1.2p1_0309F.1_g120590' => 'hma', 'Hma1.2p1_0936F.1_g238900' => 'hma', 'Hma1.2p1_3552F.1_g336740' => 'hma', 'HPP92_003520' => 'vpl', 'HPP92_006628' => 'vpl', 'HPP92_006645' => 'vpl', 'HPP92_014669' => 'vpl', 'HPP92_015077' => 'vpl', 'Hund16742' => 'sun', 'Hund17022' => 'sun', 'Lalb_Chr02g0152131' => 'lal', 'Lalb_Chr05g0225371' => 'lal', 'Lalb_Chr07g0189841' => 'lal', 'Lalb_Chr07g0192961' => 'lal', 'Lalb_Chr12g0208221' => 'lal', 'Lalb_Chr13g0291211' => 'lal', 'Lalb_Chr13g0291781' => 'lal', 'Lalb_Chr18g0044651' => 'lal', 'Lalb_Chr21g0313731' => 'lal', 'Lj1g0022533' => 'lja', 'Lj2A18T50' => 'lonja', 'Lj2A92G93' => 'lonja', 'Lj3A965T73' => 'lonja', 'Lj3g0000673' => 'lja', 'Lj3g0002666' => 'lja', 'Lj4g0016985' => 'lja', 'Lj5g0003625' => 'lja', 'Lj7A529G36' => 'lonja', 'Lj9A569T49' => 'lonja', 'Lj9A604T63' => 'lonja', 'Lsat_1_v5_gn_3_132060' => 'lsa', 'Lsat_1_v5_gn_4_68941' => 'lsa', 'Lsat_1_v5_gn_5_95580' => 'lsa', 'Lsat_1_v5_gn_7_161' => 'lsa', 'Lsat_1_v5_gn_7_7041' => 'lsa', 'Lsat_1_v5_gn_9_33481' => 'lsa', 'Lsat_1_v5_gn_9_68260' => 'lsa', 'Manes.01G073100' => 'mes', 'Manes.01G266300' => 'mes', 'Manes.02G033300' => 'mes', 'Manes.05G017900' => 'mes', 'Manes.05G046100' => 'mes', 'Manes.08G080900' => 'mes', 'Manes.10G049400' => 'mes', 'Mapoly0009s0186' => 'mpo', 'Mapoly0036s0118' => 'mpo', 'Mapoly0101s0046' => 'mpo', 'MBI04_g30218_MAGBIO' => 'mbi', 'MBI04_g35564_MAGBIO' => 'mbi', 'MBI12_g34011_MAGBIO' => 'mbi', 'MBI14_g04655_MAGBIO' => 'mbi', 'MCO07G653' => 'mco', 'MCO10G173' => 'mco', 'MD01G1087100' => 'mdo', 'MD01G1104200' => 'mdo', 'MD02G1205100' => 'mdo', 'MD04G1079200' => 'mdo', 'MD04G1131400' => 'mdo', 'MD07G1121600' => 'mdo', 'MD07G1157300' => 'mdo', 'MD07G1171000' => 'mdo', 'MD12G1144500' => 'mdo', 'Medtr1g094610' => 'mtr', 'Medtr4g021795' => 'mtr', 'Medtr4g023760' => 'mtr', 'Medtr7g118050' => 'mtr', 'MELO3C005582.2' => 'cme', 'MELO3C005989.2' => 'cme', 'MELO3C006192.2' => 'cme', 'MELO3C009248.2' => 'cme', 'MELO3C019817.2' => 'cme', 'Migut.B01625' => 'egut', 'Migut.B01915' => 'egut', 'Migut.F01721' => 'egut', 'Migut.J00314' => 'egut', 'MSTRG.20742' => 'ama', 'MSTRG.8134' => 'ama', 'Nitab4.5_0000096g0010' => 'nta', 'Nitab4.5_0000202g0030' => 'nta', 'Nitab4.5_0000216g0370' => 'nta', 'Nitab4.5_0000457g0230' => 'nta', 'Nitab4.5_0001702g0170' => 'nta', 'Nitab4.5_0003607g0010' => 'nta', 'Nitab4.5_0004917g0020' => 'nta', 'Nitab4.5_0007059g0010' => 'nta', 'Nitab4.5_0007184g0010' => 'nta', 'Nitab4.5_0007346g0020' => 'nta', 'Nn1g00410' => 'nnu', 'Nn1g01252' => 'nnu', 'Nn2g11168' => 'nnu', 'Nn2g13403' => 'nnu', 'Nn2g13760' => 'nnu', 'Nn4g26380' => 'nnu', 'Oeu000806.2' => 'oeu', 'Oeu005788.1' => 'oeu', 'Oeu006900.3' => 'oeu', 'Oeu007797.1' => 'oeu', 'Oeu011932.1' => 'oeu', 'Oeu022739.1' => 'oeu', 'Oeu037918.1' => 'oeu', 'Oeu055490.2' => 'oeu', 'Os01g0844400' => 'osa', 'Os02g0819100' => 'osa', 'Os03g0804300' => 'osa', 'Os05g0458000' => 'osa', 'Os07g0467800' => 'osa', 'Os12g0602200' => 'osa', 'Peaxi162Scf00013g03444' => 'pax', 'Peaxi162Scf00094g01120' => 'pax', 'Peaxi162Scf00191g01211' => 'pax', 'Peaxi162Scf00238g01110' => 'pax', 'Peaxi162Scf00330g00719' => 'pax', 'Peaxi162Scf00627g00018' => 'pax', 'PGR031G2686' => 'pgr', 'PGR042G0809' => 'pgr', 'PGR142G0193' => 'pgr', 'PGSC0003DMG400011066' => 'stu', 'PGSC0003DMG400012041' => 'stu', 'PGSC0003DMG400013678' => 'stu', 'PGSC0003DMG400023477' => 'stu', 'PGSC0003DMG400025956' => 'stu', 'PGSC0003DMG401019151' => 'stu', 'Phvul.006G116400' => 'pvu', 'Phvul.007G097300' => 'pvu', 'Phvul.010G015000' => 'pvu', 'Phvul.010G083900' => 'pvu', 'Potri.001G117100' => 'ptr', 'Potri.002G147300' => 'ptr', 'Potri.003G115600' => 'ptr', 'Potri.006G087400' => 'ptr', 'Potri.010G226100' => 'ptr', 'Potri.014G069200' => 'ptr', 'Potri.014G104000' => 'ptr', 'Potri.016G100200' => 'ptr', 'Pp3c10_20450' => 'ppa', 'Pp3c1_42400' => 'ppa', 'Pp3c3_24390' => 'ppa', 'Pp3c3_2860' => 'ppa', 'PRCOL_00003193' => 'pco', 'Prupe.2G144500' => 'ppe', 'Prupe.2G195700' => 'ppe', 'Prupe.2G209800' => 'ppe', 'Prupe.5G080000' => 'ppe', 'Prupe.6G257900' => 'ppe', 'Psat3g001160' => 'psa', 'Psat6g181880' => 'psa', 'Psat7g233720' => 'psa', 'PSO063G7587' => 'pso', 'PSO339G2145' => 'pso', 'PSO339G3369' => 'pso', 'PSO478G2747' => 'pso', 'PSO513G0140' => 'pso', 'PSO782G1614' => 'pso', 'PSO782G4889' => 'pso', 'PSO782G5485' => 'pso', 'PSO801G0241' => 'pso', 'QL07p048854' => 'qlo', 'QL08p046745' => 'qlo', 'QL08p052606' => 'qlo', 'QL08p053414' => 'qlo', 'QL08p054868' => 'qlo', 'RcHm_v2.0_Chr1g0350251' => 'rch', 'RcHm_v2.0_Chr1g0360851' => 'rch', 'RcHm_v2.0_Chr1g0362791' => 'rch', 'RcHm_v2.0_Chr3g0466281' => 'rch', 'RcHm_v2.0_Chr7g0201481' => 'rch', 'Rhsim01G0148600' => 'rsi', 'Rhsim05G0194400' => 'rsi', 'Rhsim07G0000700' => 'rsi', 'Rhsim07G0000800' => 'rsi', 'Rhsim07G0027900' => 'rsi', 'Rhsim09G0149500' => 'rsi', 'RhsimUnG0186900' => 'rsi', 'Sabra01G0089900' => 'sbr', 'Sabra02G0114700' => 'sbr', 'Sabra02G0116300' => 'sbr', 'Sabra03G0080100' => 'sbr', 'Sabra08G0024300' => 'sbr', 'Sabra10G0174300' => 'sbr', 'Sabra14G0048900' => 'sbr', 'Sabra14G0076500' => 'sbr', 'SalBow5G2513' => 'sbo', 'Sc01g0002300' => 'sci', 'Sc01g0004450' => 'sci', 'Sc06g0001680' => 'sci', 'Sc23g0003580' => 'sci', 'Sed0000913' => 'sed', 'Sed0001655' => 'sed', 'Sed0007745' => 'sed', 'Sed0010951' => 'sed', 'Sed0017599' => 'sed', 'Sed0021405' => 'sed', 'Sed0022810' => 'sed', 'SEGI_07099' => 'sgi', 'SEGI_11931' => 'sgi', 'SEGI_13187' => 'sgi', 'SEGI_29958' => 'sgi', 'SEGI_36351' => 'sgi', 'SGA_v2.0_scaffold126G33770' => 'sas', 'SGA_v2.0_scaffold153G37003' => 'sas', 'SGA_v2.0_scaffold2G01359' => 'sas', 'SGA_v2.0_scaffold5G03064' => 'sas', 'SGA_v2.0_scaffold95G28903' => 'sas', 'SHI12701' => 'shi', 'SHI26410' => 'shi', 'SHI38997' => 'shi', 'SHI53759' => 'shi', 'SHI53886' => 'shi', 'SHI54714' => 'shi', 'SMO011G0041' => 'smo', 'SMO146G0251' => 'smo', 'SMO160G0004' => 'smo', 'SMO174G0057' => 'smo', 'SMO244G0089' => 'smo', 'SMO296G0011' => 'smo', 'Solyc01g091280.3' => 'sly', 'Solyc05g047610.3' => 'sly', 'Solyc05g047640.3' => 'sly', 'Solyc05g055630.3' => 'sly', 'Solyc10g018160.2' => 'sly', 'Solyc10g084820.2' => 'sly', 'Solyc10g086565.2' => 'sly', 'Sopen01g037030' => 'spe', 'Sopen05g027920' => 'spe', 'Sopen05g034070' => 'spe', 'Sopen10g007260' => 'spe', 'Sopen10g034260' => 'spe', 'Sopen10g035950' => 'spe', 'Sp3g07710' => 'spa', 'Sp4g27420' => 'spa', 'Sp5g02450' => 'spa', 'Sp6g01280' => 'spa', 'Sp6g38480' => 'spa', 'Sp7g20780' => 'spa', 'TAR374G1413' => 'tar', 'TAR623G1777' => 'tar', 'TAR629G2370' => 'tar', 'TAR633G1759' => 'tar', 'TAR636G3387' => 'tar', 'THA.LOC104802447' => 'tha', 'THA.LOC104813916' => 'tha', 'THA.LOC104816423' => 'tha', 'THA.LOC104817246' => 'tha', 'THA.LOC104825895' => 'tha', 'Thecc.01G335200' => 'tca', 'Thecc.01G377400' => 'tca', 'Thecc.03G262200' => 'tca', 'Thecc.05G036800' => 'tca', 'Thecc.10G080500' => 'tca', 'Thecc.10G080800' => 'tca', 'Thhalv10001560m.g' => 'esa', 'Thhalv10006120m.g' => 'esa', 'Thhalv10014375m.g' => 'esa', 'Thhalv10021264m.g' => 'esa', 'Thhalv10028856m.g' => 'esa', 'TPR.G1914' => 'tpr', 'TPR.G4757' => 'tpr', 'TPR.G5595' => 'tpr', 'TWI14G0952' => 'twi', 'TWI14G1307' => 'twi', 'TWI38G2143' => 'twi', 'TWI59G0826' => 'twi', 'TWI77G0527' => 'twi', 'TWI81G0150' => 'twi', 'unitig_21.g21018' => 'ugi', 'unitig_26.g9725' => 'ugi', 'unitig_744.g24653' => 'ugi', 'unitig_749.g13778' => 'ugi', 'unitig_899.g15035' => 'ugi', 'vmacro04296' => 'vma', 'vmacro04852' => 'vma', 'vmacro13404' => 'vma', 'vmacro20169' => 'vma', 'vmacro21014' => 'vma', 'VMungo0331G0237' => 'vmu', 'VMungo0331G0706' => 'vmu', 'VMungo0331G1361' => 'vmu', 'VMungo0331G1489' => 'vmu', 'VMungo0540G1037' => 'vmu', 'VMungo0720G2487' => 'vmu', 'VMungo0720G2721' => 'vmu', 'Zm00001eb086860' => 'zma', 'Zm00001eb104760' => 'zma', 'Zm00001eb148220' => 'zma', 'Zm00001eb259030' => 'zma', 'Zm00001eb289590' => 'zma', 'Zm00001eb420150' => 'zma' ) $gf_id = 'HOM05D000968' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000968' ) $data_identifier = 'HOM05D000968' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 19, 'bol' => (int) 9, 'bra' => (int) 12, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 5, 'ccan' => (int) 7, 'cde' => (int) 5, 'cfa' => (int) 8, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 4, 'dca' => (int) 5, 'din' => (int) 5, 'dzi' => (int) 12, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 25, 'fve' => (int) 5, 'gma' => (int) 9, 'ghi' => (int) 18, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 7, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 5, 'sun' => (int) 2, 'lal' => (int) 9, 'lja' => (int) 5, 'lonja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 9, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 2, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 3, 'stu' => (int) 6, 'pvu' => (int) 4, 'ptr' => (int) 8, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 3, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 1, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 5, 'sas' => (int) 5, 'shi' => (int) 6, 'smo' => (int) 6, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 3, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420150' $species_info = array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ) $local_species = 'mbi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000968', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p31690' => 'bna', 'A03p36040' => 'bna', 'A03p53730' => 'bna', 'A04p01410' => 'bna', 'A05p05420' => 'bna', 'A05p39630' => 'bna', 'A05p39640' => 'bna', 'A09p00970' => 'bna', 'A09p53060' => 'bna', 'A10p31890' => 'bna', 'Aa31LG10G15040' => 'aar', 'Aa31LG1G21090' => 'aar', 'Aa31LG1G26900' => 'aar', 'Aa31LG3G1820' => 'aar', 'Aa31LG5G1100' => 'aar', 'Aa31LG6G4740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2265' => 'aag', 'Actinidia07998' => 'ach', 'Actinidia11266' => 'ach', 'Actinidia12682' => 'ach', 'Actinidia26479' => 'ach', 'Actinidia31406' => 'ach', 'Actinidia32437' => 'ach', 'Actinidia38862' => 'ach', 'Ah.05g174230' => 'amhyb', 'Ah.05g179070' => 'amhyb', 'Ah.05g179090' => 'amhyb', 'Ah.12g059950' => 'amhyb', 'AL3G20480' => 'aly', 'AL4G44520' => 'aly', 'AL5G43110' => 'aly', 'AL6G13890' => 'aly', 'AL6G52620' => 'aly', 'AL7G30830' => 'aly', 'Aqoxy1G00899' => 'aox', 'Aqoxy5G04333' => 'aox', 'Aqoxy7G00641' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3IZ0NN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4EF6AW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W9P8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79GA3M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C43NQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFCU6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G95YVJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCHK29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LU1UG8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX91RN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGB4B1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8DA0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9H7JI' => 'arhy', 'AT3G09320' => 'ath', 'AT3G60800' => 'ath', 'AT4G00840' => 'ath', 'AT4G22750' => 'ath', 'AT5G04270' => 'ath', 'ATR0090G003' => 'atr', 'ATR0559G349' => 'atr', 'ATR0680G261' => 'atr', 'ATR0810G048' => 'atr', 'Atru.chr12.831' => 'acertr', 'Atru.chr5.303' => 'acertr', 'Atru.chr5.748' => 'acertr', 'Atru.chr8.1999' => 'acertr', 'Atru.chr9.1436' => 'acertr', 'AUR62004211' => 'cqu', 'AUR62004548' => 'cqu', 'AUR62013637' => 'cqu', 'AUR62022662' => 'cqu', 'AUR62025777' => 'cqu', 'AUR62042386' => 'cqu', 'BcaB01g02310' => 'bca', 'BcaB01g06062' => 'bca', 'BcaB02g08975' => 'bca', 'BcaB02g08980' => 'bca', 'BcaC01g04228' => 'bca', 'BcaC01g06830' => 'bca', 'BcaC02g10186' => 'bca', 'BcaC02g12214' => 'bca', 'BcaC04g24101' => 'bca', 'BcaC05g29520' => 'bca', 'BcaC05g29661' => 'bca', 'BcaC06g32130' => 'bca', 'BcaC06g32131' => 'bca', 'BcaC07g40601' => 'bca', 'BcaC07g42641' => 'bca', 'BcaNung01038' => 'bca', 'BcaNung01676' => 'bca', 'BcaNung02480' => 'bca', 'BcaNung07376' => 'bca', 'BolC3t16146H' => 'bol', 'BolC3t16637H' => 'bol', 'BolC4t22257H' => 'bol', 'BolC4t24728H' => 'bol', 'BolC5t34517H' => 'bol', 'BolC7t45703H' => 'bol', 'BolC8t51166H' => 'bol', 'BolC9t53038H' => 'bol', 'BolC9t60000H' => 'bol', 'BraA01t01345Z' => 'bra', 'BraA01t01346Z' => 'bra', 'BraA01t01348Z' => 'bra', 'BraA03t12347Z' => 'bra', 'BraA03t12775Z' => 'bra', 'BraA03t14439Z' => 'bra', 'BraA04t15860Z' => 'bra', 'BraA05t19511Z' => 'bra', 'BraA05t22746Z' => 'bra', 'BraA09t35767Z' => 'bra', 'BraA09t40732Z' => 'bra', 'BraA10t45233Z' => 'bra', 'C03p38720' => 'bna', 'C03p43680' => 'bna', 'C04p06350' => 'bna', 'C04p31800' => 'bna', 'C05p58680' => 'bna', 'C07p52110' => 'bna', 'C08p35760' => 'bna', 'C09p01050' => 'bna', 'C09p72600' => 'bna', 'CAN.G106.2' => 'can', 'CAN.G1482.1' => 'can', 'CAN.G324.12' => 'can', 'CAN.G388.20' => 'can', 'CAN.G412.7' => 'can', 'CAN.G694.32' => 'can', 'CAN.G92.12' => 'can', 'CANSAT11G2353' => 'cansat', 'CANSAT21G1398' => 'cansat', 'CANSAT56G2456' => 'cansat', 'CANSAT56G3031' => 'cansat', 'CANSAT56G4539' => 'cansat', 'CARHR083680' => 'chi', 'CARHR171190' => 'chi', 'CARHR209010' => 'chi', 'CARHR229680' => 'chi', 'CARHR249490' => 'chi', 'Carub.0003s0844' => 'cru', 'Carub.0005s2755' => 'cru', 'Carub.0006s0322' => 'cru', 'Carub.0006s3586' => 'cru', 'Carub.0007s1855' => 'cru', 'Ca_07808_v3' => 'car', 'Ca_09535_v3' => 'car', 'Ca_10548_v3' => 'car', 'Ca_19913_v3' => 'car', 'Ca_19916_v3' => 'car', 'Ca_19975_v3' => 'car', 'CBR_g22876' => 'cbr', 'CBR_g22879' => 'cbr', 'CBR_g38491' => 'cbr', 'CBR_g54185' => 'cbr', 'CBR_g54190' => 'cbr', 'Cc02_g11020' => 'ccan', 'Cc02_g23920' => 'ccan', 'Cc02_g39860' => 'ccan', 'Cc02_g39870' => 'ccan', 'Cc03_g06760' => 'ccan', 'Cc06_g02450' => 'ccan', 'Cc09_g09450' => 'ccan', 'CDE02G1959' => 'cde', 'CDE04G0600' => 'cde', 'CDE07G1996' => 'cde', 'CDE07G2078' => 'cde', 'CDE11G0611' => 'cde', 'Cfa001683' => 'cfa', 'Cfa001734' => 'cfa', 'Cfa001737' => 'cfa', 'Cfa003751' => 'cfa', 'Cfa012019' => 'cfa', 'Cfa017353' => 'cfa', 'Cfa017732' => 'cfa', 'Cfa022464' => 'cfa', 'Ciclev10012400m.g' => 'ccl', 'Ciclev10021242m.g' => 'ccl', 'Ciclev10021302m.g' => 'ccl', 'Ciclev10021463m.g' => 'ccl', 'Ciclev10032359m.g' => 'ccl', 'CiPaw.01G081000' => 'cil', 'CiPaw.01G262500' => 'cil', 'CiPaw.01G269800' => 'cil', 'CiPaw.02G168400' => 'cil', 'CiPaw.05G119500' => 'cil', 'CiPaw.11G147300' => 'cil', 'ClCG01G003630' => 'cla', 'ClCG05G000510' => 'cla', 'ClCG05G002300' => 'cla', 'ClCG08G007650' => 'cla', 'ClCG10G021250' => 'cla', 'COL.COLO4_06218' => 'col', 'COL.COLO4_12538' => 'col', 'COL.COLO4_14775' => 'col', 'COL.COLO4_23875' => 'col', 'Cpa.g.sc141.16' => 'cpa', 'Cpa.g.sc169.16' => 'cpa', 'Cpa.g.sc244.4' => 'cpa', 'Cpa.g.sc244.5' => 'cpa', 'Cpa.g.sc29.87' => 'cpa', 'Cpa.g.sc53.115' => 'cpa', 'Cre03.g207502' => 'cre', 'Cre06.g277000' => 'cre', 'Cre09.g394050' => 'cre', 'CsaV3_3G007680' => 'csa', 'CsaV3_3G009710' => 'csa', 'CsaV3_3G034790' => 'csa', 'CsaV3_5G003750' => 'csa', 'CsaV3_6G036620' => 'csa', 'CSS0002288' => 'camsi', 'CSS0011250' => 'camsi', 'CSS0021619' => 'camsi', 'CSS0046701' => 'camsi', 'DCAR_006420' => 'dca', 'DCAR_006865' => 'dca', 'DCAR_008558' => 'dca', 'DCAR_028754' => 'dca', 'DCAR_028755' => 'dca', 'Dinv31218' => 'din', 'Dinv32371' => 'din', 'Dinv34250' => 'din', 'Dinv37156' => 'din', 'Dinv43704' => 'din', 'Duzib093G1811' => 'dzi', 'Duzib106G1622' => 'dzi', 'Duzib114G0504' => 'dzi', 'Duzib128G0338' => 'dzi', 'Duzib128G1577' => 'dzi', 'Duzib133G0104' => 'dzi', 'Duzib133G1080' => 'dzi', 'Duzib138G0324' => 'dzi', 'Duzib138G0394' => 'dzi', 'Duzib205G0122' => 'dzi', 'Duzib268G1020' => 'dzi', 'Duzib268G1359' => 'dzi', 'ECA232G3929' => 'eca', 'ECA236G2210' => 'eca', 'ECA236G2287' => 'eca', 'ECA240G4568' => 'eca', 'ECA247G0894' => 'eca', 'EL10Ac1g00200' => 'bvu', 'EL10Ac1g00886' => 'bvu', 'EL10As1g23091' => 'bvu', 'EL10As1g23092' => 'bvu', 'Eucgr.A01284' => 'egr', 'Eucgr.A01285' => 'egr', 'Eucgr.D02456' => 'egr', 'Eucgr.E00018' => 'egr', 'Eucgr.E01439' => 'egr', 'Eucgr.G02859' => 'egr', 'FAN01G0168' => 'fan', 'FAN01G0453' => 'fan', 'FAN01G2761' => 'fan', 'FAN02G1239' => 'fan', 'FAN03G0645' => 'fan', 'FAN03G2707' => 'fan', 'FAN03G2978' => 'fan', 'FAN04G0227' => 'fan', 'FAN06G0091' => 'fan', 'FAN06G1418' => 'fan', 'FAN06G1512' => 'fan', 'FAN06G1986' => 'fan', 'FAN06G2905' => 'fan', 'FAN06G4325' => 'fan', 'FAN08G0033' => 'fan', 'FAN09G0642' => 'fan', 'FAN10G1763' => 'fan', 'FAN10G2026' => 'fan', 'FAN10G2513' => 'fan', 'FAN10G3402' => 'fan', 'FAN10G3564' => 'fan', 'FAN10G3987' => 'fan', 'FAN13G1490' => 'fan', 'FAN14G5857' => 'fan', 'FAN18G1188' => 'fan', 'FvH4_5g00750' => 'fve', 'FvH4_6g13410' => 'fve', 'FvH4_7g11740' => 'fve', 'FvH4_7g17410' => 'fve', 'FvH4_7g18860' => 'fve', 'Glyma.01G099100' => 'gma', 'Glyma.01G142300' => 'gma', 'Glyma.03G025500' => 'gma', 'Glyma.03G069700' => 'gma', 'Glyma.03G260000' => 'gma', 'Glyma.09G269800' => 'gma', 'Glyma.10G208700' => 'gma', 'Glyma.18G220400' => 'gma', 'Glyma.20G182000' => 'gma', 'Gohir.A01G221726' => 'ghi', 'Gohir.A07G134600' => 'ghi', 'Gohir.A07G146000' => 'ghi', 'Gohir.A08G173900' => 'ghi', 'Gohir.A09G194900' => 'ghi', 'Gohir.A10G204100' => 'ghi', 'Gohir.A11G080600' => 'ghi', 'Gohir.A11G327500' => 'ghi', 'Gohir.A12G101800' => 'ghi', 'Gohir.D01G211200' => 'ghi', 'Gohir.D07G139200' => 'ghi', 'Gohir.D07G152100' => 'ghi', 'Gohir.D08G192600' => 'ghi', 'Gohir.D09G189200' => 'ghi', 'Gohir.D10G212000' => 'ghi', 'Gohir.D11G085200' => 'ghi', 'Gohir.D11G346400' => 'ghi', 'Gohir.D12G104800' => 'ghi', 'Gorai.001G151300' => 'gra', 'Gorai.001G174100' => 'gra', 'Gorai.002G257000' => 'gra', 'Gorai.004G202600' => 'gra', 'Gorai.007G090900' => 'gra', 'Gorai.007G376700' => 'gra', 'Gorai.008G114100' => 'gra', 'Gorai.011G237900' => 'gra', 'GSVIVG01005450001' => 'vvi', 'GSVIVG01016232001' => 'vvi', 'GSVIVG01026157001' => 'vvi', 'GSVIVG01027419001' => 'vvi', 'GSVIVG01027631001' => 'vvi', 'GSVIVG01034143001' => 'vvi', 'HanXRQChr03g0093921' => 'han', 'HanXRQChr04g0120001' => 'han', 'HanXRQChr04g0122561' => 'han', 'HanXRQChr09g0246851' => 'han', 'HanXRQChr10g0293311' => 'han', 'HanXRQChr13g0425231' => 'han', 'HanXRQChr16g0532571' => 'han', 'Haze_09050' => 'cav', 'Haze_15715' => 'cav', 'Haze_15716' => 'cav', 'Haze_16803' => 'cav', 'Haze_16850' => 'cav', 'Hma1.2p1_0301F.1_g118655' => 'hma', 'Hma1.2p1_0309F.1_g120590' => 'hma', 'Hma1.2p1_0936F.1_g238900' => 'hma', 'Hma1.2p1_3552F.1_g336740' => 'hma', 'HPP92_003520' => 'vpl', 'HPP92_006628' => 'vpl', 'HPP92_006645' => 'vpl', 'HPP92_014669' => 'vpl', 'HPP92_015077' => 'vpl', 'Hund16742' => 'sun', 'Hund17022' => 'sun', 'Lalb_Chr02g0152131' => 'lal', 'Lalb_Chr05g0225371' => 'lal', 'Lalb_Chr07g0189841' => 'lal', 'Lalb_Chr07g0192961' => 'lal', 'Lalb_Chr12g0208221' => 'lal', 'Lalb_Chr13g0291211' => 'lal', 'Lalb_Chr13g0291781' => 'lal', 'Lalb_Chr18g0044651' => 'lal', 'Lalb_Chr21g0313731' => 'lal', 'Lj1g0022533' => 'lja', 'Lj2A18T50' => 'lonja', 'Lj2A92G93' => 'lonja', 'Lj3A965T73' => 'lonja', 'Lj3g0000673' => 'lja', 'Lj3g0002666' => 'lja', 'Lj4g0016985' => 'lja', 'Lj5g0003625' => 'lja', 'Lj7A529G36' => 'lonja', 'Lj9A569T49' => 'lonja', 'Lj9A604T63' => 'lonja', 'Lsat_1_v5_gn_3_132060' => 'lsa', 'Lsat_1_v5_gn_4_68941' => 'lsa', 'Lsat_1_v5_gn_5_95580' => 'lsa', 'Lsat_1_v5_gn_7_161' => 'lsa', 'Lsat_1_v5_gn_7_7041' => 'lsa', 'Lsat_1_v5_gn_9_33481' => 'lsa', 'Lsat_1_v5_gn_9_68260' => 'lsa', 'Manes.01G073100' => 'mes', 'Manes.01G266300' => 'mes', 'Manes.02G033300' => 'mes', 'Manes.05G017900' => 'mes', 'Manes.05G046100' => 'mes', 'Manes.08G080900' => 'mes', 'Manes.10G049400' => 'mes', 'Mapoly0009s0186' => 'mpo', 'Mapoly0036s0118' => 'mpo', 'Mapoly0101s0046' => 'mpo', 'MBI04_g30218_MAGBIO' => 'mbi', 'MBI04_g35564_MAGBIO' => 'mbi', 'MBI12_g34011_MAGBIO' => 'mbi', 'MBI14_g04655_MAGBIO' => 'mbi', 'MCO07G653' => 'mco', 'MCO10G173' => 'mco', 'MD01G1087100' => 'mdo', 'MD01G1104200' => 'mdo', 'MD02G1205100' => 'mdo', 'MD04G1079200' => 'mdo', 'MD04G1131400' => 'mdo', 'MD07G1121600' => 'mdo', 'MD07G1157300' => 'mdo', 'MD07G1171000' => 'mdo', 'MD12G1144500' => 'mdo', 'Medtr1g094610' => 'mtr', 'Medtr4g021795' => 'mtr', 'Medtr4g023760' => 'mtr', 'Medtr7g118050' => 'mtr', 'MELO3C005582.2' => 'cme', 'MELO3C005989.2' => 'cme', 'MELO3C006192.2' => 'cme', 'MELO3C009248.2' => 'cme', 'MELO3C019817.2' => 'cme', 'Migut.B01625' => 'egut', 'Migut.B01915' => 'egut', 'Migut.F01721' => 'egut', 'Migut.J00314' => 'egut', 'MSTRG.20742' => 'ama', 'MSTRG.8134' => 'ama', 'Nitab4.5_0000096g0010' => 'nta', 'Nitab4.5_0000202g0030' => 'nta', 'Nitab4.5_0000216g0370' => 'nta', 'Nitab4.5_0000457g0230' => 'nta', 'Nitab4.5_0001702g0170' => 'nta', 'Nitab4.5_0003607g0010' => 'nta', 'Nitab4.5_0004917g0020' => 'nta', 'Nitab4.5_0007059g0010' => 'nta', 'Nitab4.5_0007184g0010' => 'nta', 'Nitab4.5_0007346g0020' => 'nta', 'Nn1g00410' => 'nnu', 'Nn1g01252' => 'nnu', 'Nn2g11168' => 'nnu', 'Nn2g13403' => 'nnu', 'Nn2g13760' => 'nnu', 'Nn4g26380' => 'nnu', 'Oeu000806.2' => 'oeu', 'Oeu005788.1' => 'oeu', 'Oeu006900.3' => 'oeu', 'Oeu007797.1' => 'oeu', 'Oeu011932.1' => 'oeu', 'Oeu022739.1' => 'oeu', 'Oeu037918.1' => 'oeu', 'Oeu055490.2' => 'oeu', 'Os01g0844400' => 'osa', 'Os02g0819100' => 'osa', 'Os03g0804300' => 'osa', 'Os05g0458000' => 'osa', 'Os07g0467800' => 'osa', 'Os12g0602200' => 'osa', 'Peaxi162Scf00013g03444' => 'pax', 'Peaxi162Scf00094g01120' => 'pax', 'Peaxi162Scf00191g01211' => 'pax', 'Peaxi162Scf00238g01110' => 'pax', 'Peaxi162Scf00330g00719' => 'pax', 'Peaxi162Scf00627g00018' => 'pax', 'PGR031G2686' => 'pgr', 'PGR042G0809' => 'pgr', 'PGR142G0193' => 'pgr', 'PGSC0003DMG400011066' => 'stu', 'PGSC0003DMG400012041' => 'stu', 'PGSC0003DMG400013678' => 'stu', 'PGSC0003DMG400023477' => 'stu', 'PGSC0003DMG400025956' => 'stu', 'PGSC0003DMG401019151' => 'stu', 'Phvul.006G116400' => 'pvu', 'Phvul.007G097300' => 'pvu', 'Phvul.010G015000' => 'pvu', 'Phvul.010G083900' => 'pvu', 'Potri.001G117100' => 'ptr', 'Potri.002G147300' => 'ptr', 'Potri.003G115600' => 'ptr', 'Potri.006G087400' => 'ptr', 'Potri.010G226100' => 'ptr', 'Potri.014G069200' => 'ptr', 'Potri.014G104000' => 'ptr', 'Potri.016G100200' => 'ptr', 'Pp3c10_20450' => 'ppa', 'Pp3c1_42400' => 'ppa', 'Pp3c3_24390' => 'ppa', 'Pp3c3_2860' => 'ppa', 'PRCOL_00003193' => 'pco', 'Prupe.2G144500' => 'ppe', 'Prupe.2G195700' => 'ppe', 'Prupe.2G209800' => 'ppe', 'Prupe.5G080000' => 'ppe', 'Prupe.6G257900' => 'ppe', 'Psat3g001160' => 'psa', 'Psat6g181880' => 'psa', 'Psat7g233720' => 'psa', 'PSO063G7587' => 'pso', 'PSO339G2145' => 'pso', 'PSO339G3369' => 'pso', 'PSO478G2747' => 'pso', 'PSO513G0140' => 'pso', 'PSO782G1614' => 'pso', 'PSO782G4889' => 'pso', 'PSO782G5485' => 'pso', 'PSO801G0241' => 'pso', 'QL07p048854' => 'qlo', 'QL08p046745' => 'qlo', 'QL08p052606' => 'qlo', 'QL08p053414' => 'qlo', 'QL08p054868' => 'qlo', 'RcHm_v2.0_Chr1g0350251' => 'rch', 'RcHm_v2.0_Chr1g0360851' => 'rch', 'RcHm_v2.0_Chr1g0362791' => 'rch', 'RcHm_v2.0_Chr3g0466281' => 'rch', 'RcHm_v2.0_Chr7g0201481' => 'rch', 'Rhsim01G0148600' => 'rsi', 'Rhsim05G0194400' => 'rsi', 'Rhsim07G0000700' => 'rsi', 'Rhsim07G0000800' => 'rsi', 'Rhsim07G0027900' => 'rsi', 'Rhsim09G0149500' => 'rsi', 'RhsimUnG0186900' => 'rsi', 'Sabra01G0089900' => 'sbr', 'Sabra02G0114700' => 'sbr', 'Sabra02G0116300' => 'sbr', 'Sabra03G0080100' => 'sbr', 'Sabra08G0024300' => 'sbr', 'Sabra10G0174300' => 'sbr', 'Sabra14G0048900' => 'sbr', 'Sabra14G0076500' => 'sbr', 'SalBow5G2513' => 'sbo', 'Sc01g0002300' => 'sci', 'Sc01g0004450' => 'sci', 'Sc06g0001680' => 'sci', 'Sc23g0003580' => 'sci', 'Sed0000913' => 'sed', 'Sed0001655' => 'sed', 'Sed0007745' => 'sed', 'Sed0010951' => 'sed', 'Sed0017599' => 'sed', 'Sed0021405' => 'sed', 'Sed0022810' => 'sed', 'SEGI_07099' => 'sgi', 'SEGI_11931' => 'sgi', 'SEGI_13187' => 'sgi', 'SEGI_29958' => 'sgi', 'SEGI_36351' => 'sgi', 'SGA_v2.0_scaffold126G33770' => 'sas', 'SGA_v2.0_scaffold153G37003' => 'sas', 'SGA_v2.0_scaffold2G01359' => 'sas', 'SGA_v2.0_scaffold5G03064' => 'sas', 'SGA_v2.0_scaffold95G28903' => 'sas', 'SHI12701' => 'shi', 'SHI26410' => 'shi', 'SHI38997' => 'shi', 'SHI53759' => 'shi', 'SHI53886' => 'shi', 'SHI54714' => 'shi', 'SMO011G0041' => 'smo', 'SMO146G0251' => 'smo', 'SMO160G0004' => 'smo', 'SMO174G0057' => 'smo', 'SMO244G0089' => 'smo', 'SMO296G0011' => 'smo', 'Solyc01g091280.3' => 'sly', 'Solyc05g047610.3' => 'sly', 'Solyc05g047640.3' => 'sly', 'Solyc05g055630.3' => 'sly', 'Solyc10g018160.2' => 'sly', 'Solyc10g084820.2' => 'sly', 'Solyc10g086565.2' => 'sly', 'Sopen01g037030' => 'spe', 'Sopen05g027920' => 'spe', 'Sopen05g034070' => 'spe', 'Sopen10g007260' => 'spe', 'Sopen10g034260' => 'spe', 'Sopen10g035950' => 'spe', 'Sp3g07710' => 'spa', 'Sp4g27420' => 'spa', 'Sp5g02450' => 'spa', 'Sp6g01280' => 'spa', 'Sp6g38480' => 'spa', 'Sp7g20780' => 'spa', 'TAR374G1413' => 'tar', 'TAR623G1777' => 'tar', 'TAR629G2370' => 'tar', 'TAR633G1759' => 'tar', 'TAR636G3387' => 'tar', 'THA.LOC104802447' => 'tha', 'THA.LOC104813916' => 'tha', 'THA.LOC104816423' => 'tha', 'THA.LOC104817246' => 'tha', 'THA.LOC104825895' => 'tha', 'Thecc.01G335200' => 'tca', 'Thecc.01G377400' => 'tca', 'Thecc.03G262200' => 'tca', 'Thecc.05G036800' => 'tca', 'Thecc.10G080500' => 'tca', 'Thecc.10G080800' => 'tca', 'Thhalv10001560m.g' => 'esa', 'Thhalv10006120m.g' => 'esa', 'Thhalv10014375m.g' => 'esa', 'Thhalv10021264m.g' => 'esa', 'Thhalv10028856m.g' => 'esa', 'TPR.G1914' => 'tpr', 'TPR.G4757' => 'tpr', 'TPR.G5595' => 'tpr', 'TWI14G0952' => 'twi', 'TWI14G1307' => 'twi', 'TWI38G2143' => 'twi', 'TWI59G0826' => 'twi', 'TWI77G0527' => 'twi', 'TWI81G0150' => 'twi', 'unitig_21.g21018' => 'ugi', 'unitig_26.g9725' => 'ugi', 'unitig_744.g24653' => 'ugi', 'unitig_749.g13778' => 'ugi', 'unitig_899.g15035' => 'ugi', 'vmacro04296' => 'vma', 'vmacro04852' => 'vma', 'vmacro13404' => 'vma', 'vmacro20169' => 'vma', 'vmacro21014' => 'vma', 'VMungo0331G0237' => 'vmu', 'VMungo0331G0706' => 'vmu', 'VMungo0331G1361' => 'vmu', 'VMungo0331G1489' => 'vmu', 'VMungo0540G1037' => 'vmu', 'VMungo0720G2487' => 'vmu', 'VMungo0720G2721' => 'vmu', 'Zm00001eb086860' => 'zma', 'Zm00001eb104760' => 'zma', 'Zm00001eb148220' => 'zma', 'Zm00001eb259030' => 'zma', 'Zm00001eb289590' => 'zma', 'Zm00001eb420150' => 'zma' ), 'gf_id' => 'HOM05D000968', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000968' ), 'data_identifier' => 'HOM05D000968', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000968', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p31690' => 'bna', 'A03p36040' => 'bna', 'A03p53730' => 'bna', 'A04p01410' => 'bna', 'A05p05420' => 'bna', 'A05p39630' => 'bna', 'A05p39640' => 'bna', 'A09p00970' => 'bna', 'A09p53060' => 'bna', 'A10p31890' => 'bna', 'Aa31LG10G15040' => 'aar', 'Aa31LG1G21090' => 'aar', 'Aa31LG1G26900' => 'aar', 'Aa31LG3G1820' => 'aar', 'Aa31LG5G1100' => 'aar', 'Aa31LG6G4740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2265' => 'aag', 'Actinidia07998' => 'ach', 'Actinidia11266' => 'ach', 'Actinidia12682' => 'ach', 'Actinidia26479' => 'ach', 'Actinidia31406' => 'ach', 'Actinidia32437' => 'ach', 'Actinidia38862' => 'ach', 'Ah.05g174230' => 'amhyb', 'Ah.05g179070' => 'amhyb', 'Ah.05g179090' => 'amhyb', 'Ah.12g059950' => 'amhyb', 'AL3G20480' => 'aly', 'AL4G44520' => 'aly', 'AL5G43110' => 'aly', 'AL6G13890' => 'aly', 'AL6G52620' => 'aly', 'AL7G30830' => 'aly', 'Aqoxy1G00899' => 'aox', 'Aqoxy5G04333' => 'aox', 'Aqoxy7G00641' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3IZ0NN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4EF6AW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W9P8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79GA3M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C43NQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFCU6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G95YVJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCHK29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LU1UG8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX91RN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGB4B1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8DA0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9H7JI' => 'arhy', 'AT3G09320' => 'ath', 'AT3G60800' => 'ath', 'AT4G00840' => 'ath', 'AT4G22750' => 'ath', 'AT5G04270' => 'ath', 'ATR0090G003' => 'atr', 'ATR0559G349' => 'atr', 'ATR0680G261' => 'atr', 'ATR0810G048' => 'atr', 'Atru.chr12.831' => 'acertr', 'Atru.chr5.303' => 'acertr', 'Atru.chr5.748' => 'acertr', 'Atru.chr8.1999' => 'acertr', 'Atru.chr9.1436' => 'acertr', 'AUR62004211' => 'cqu', 'AUR62004548' => 'cqu', 'AUR62013637' => 'cqu', 'AUR62022662' => 'cqu', 'AUR62025777' => 'cqu', 'AUR62042386' => 'cqu', 'BcaB01g02310' => 'bca', 'BcaB01g06062' => 'bca', 'BcaB02g08975' => 'bca', 'BcaB02g08980' => 'bca', 'BcaC01g04228' => 'bca', 'BcaC01g06830' => 'bca', 'BcaC02g10186' => 'bca', 'BcaC02g12214' => 'bca', 'BcaC04g24101' => 'bca', 'BcaC05g29520' => 'bca', 'BcaC05g29661' => 'bca', 'BcaC06g32130' => 'bca', 'BcaC06g32131' => 'bca', 'BcaC07g40601' => 'bca', 'BcaC07g42641' => 'bca', 'BcaNung01038' => 'bca', 'BcaNung01676' => 'bca', 'BcaNung02480' => 'bca', 'BcaNung07376' => 'bca', 'BolC3t16146H' => 'bol', 'BolC3t16637H' => 'bol', 'BolC4t22257H' => 'bol', 'BolC4t24728H' => 'bol', 'BolC5t34517H' => 'bol', 'BolC7t45703H' => 'bol', 'BolC8t51166H' => 'bol', 'BolC9t53038H' => 'bol', 'BolC9t60000H' => 'bol', 'BraA01t01345Z' => 'bra', 'BraA01t01346Z' => 'bra', 'BraA01t01348Z' => 'bra', 'BraA03t12347Z' => 'bra', 'BraA03t12775Z' => 'bra', 'BraA03t14439Z' => 'bra', 'BraA04t15860Z' => 'bra', 'BraA05t19511Z' => 'bra', 'BraA05t22746Z' => 'bra', 'BraA09t35767Z' => 'bra', 'BraA09t40732Z' => 'bra', 'BraA10t45233Z' => 'bra', 'C03p38720' => 'bna', 'C03p43680' => 'bna', 'C04p06350' => 'bna', 'C04p31800' => 'bna', 'C05p58680' => 'bna', 'C07p52110' => 'bna', 'C08p35760' => 'bna', 'C09p01050' => 'bna', 'C09p72600' => 'bna', 'CAN.G106.2' => 'can', 'CAN.G1482.1' => 'can', 'CAN.G324.12' => 'can', 'CAN.G388.20' => 'can', 'CAN.G412.7' => 'can', 'CAN.G694.32' => 'can', 'CAN.G92.12' => 'can', 'CANSAT11G2353' => 'cansat', 'CANSAT21G1398' => 'cansat', 'CANSAT56G2456' => 'cansat', 'CANSAT56G3031' => 'cansat', 'CANSAT56G4539' => 'cansat', 'CARHR083680' => 'chi', 'CARHR171190' => 'chi', 'CARHR209010' => 'chi', 'CARHR229680' => 'chi', 'CARHR249490' => 'chi', 'Carub.0003s0844' => 'cru', 'Carub.0005s2755' => 'cru', 'Carub.0006s0322' => 'cru', 'Carub.0006s3586' => 'cru', 'Carub.0007s1855' => 'cru', 'Ca_07808_v3' => 'car', 'Ca_09535_v3' => 'car', 'Ca_10548_v3' => 'car', 'Ca_19913_v3' => 'car', 'Ca_19916_v3' => 'car', 'Ca_19975_v3' => 'car', 'CBR_g22876' => 'cbr', 'CBR_g22879' => 'cbr', 'CBR_g38491' => 'cbr', 'CBR_g54185' => 'cbr', 'CBR_g54190' => 'cbr', 'Cc02_g11020' => 'ccan', 'Cc02_g23920' => 'ccan', 'Cc02_g39860' => 'ccan', 'Cc02_g39870' => 'ccan', 'Cc03_g06760' => 'ccan', 'Cc06_g02450' => 'ccan', 'Cc09_g09450' => 'ccan', 'CDE02G1959' => 'cde', 'CDE04G0600' => 'cde', 'CDE07G1996' => 'cde', 'CDE07G2078' => 'cde', 'CDE11G0611' => 'cde', 'Cfa001683' => 'cfa', 'Cfa001734' => 'cfa', 'Cfa001737' => 'cfa', 'Cfa003751' => 'cfa', 'Cfa012019' => 'cfa', 'Cfa017353' => 'cfa', 'Cfa017732' => 'cfa', 'Cfa022464' => 'cfa', 'Ciclev10012400m.g' => 'ccl', 'Ciclev10021242m.g' => 'ccl', 'Ciclev10021302m.g' => 'ccl', 'Ciclev10021463m.g' => 'ccl', 'Ciclev10032359m.g' => 'ccl', 'CiPaw.01G081000' => 'cil', 'CiPaw.01G262500' => 'cil', 'CiPaw.01G269800' => 'cil', 'CiPaw.02G168400' => 'cil', 'CiPaw.05G119500' => 'cil', 'CiPaw.11G147300' => 'cil', 'ClCG01G003630' => 'cla', 'ClCG05G000510' => 'cla', 'ClCG05G002300' => 'cla', 'ClCG08G007650' => 'cla', 'ClCG10G021250' => 'cla', 'COL.COLO4_06218' => 'col', 'COL.COLO4_12538' => 'col', 'COL.COLO4_14775' => 'col', 'COL.COLO4_23875' => 'col', 'Cpa.g.sc141.16' => 'cpa', 'Cpa.g.sc169.16' => 'cpa', 'Cpa.g.sc244.4' => 'cpa', 'Cpa.g.sc244.5' => 'cpa', 'Cpa.g.sc29.87' => 'cpa', 'Cpa.g.sc53.115' => 'cpa', 'Cre03.g207502' => 'cre', 'Cre06.g277000' => 'cre', 'Cre09.g394050' => 'cre', 'CsaV3_3G007680' => 'csa', 'CsaV3_3G009710' => 'csa', 'CsaV3_3G034790' => 'csa', 'CsaV3_5G003750' => 'csa', 'CsaV3_6G036620' => 'csa', 'CSS0002288' => 'camsi', 'CSS0011250' => 'camsi', 'CSS0021619' => 'camsi', 'CSS0046701' => 'camsi', 'DCAR_006420' => 'dca', 'DCAR_006865' => 'dca', 'DCAR_008558' => 'dca', 'DCAR_028754' => 'dca', 'DCAR_028755' => 'dca', 'Dinv31218' => 'din', 'Dinv32371' => 'din', 'Dinv34250' => 'din', 'Dinv37156' => 'din', 'Dinv43704' => 'din', 'Duzib093G1811' => 'dzi', 'Duzib106G1622' => 'dzi', 'Duzib114G0504' => 'dzi', 'Duzib128G0338' => 'dzi', 'Duzib128G1577' => 'dzi', 'Duzib133G0104' => 'dzi', 'Duzib133G1080' => 'dzi', 'Duzib138G0324' => 'dzi', 'Duzib138G0394' => 'dzi', 'Duzib205G0122' => 'dzi', 'Duzib268G1020' => 'dzi', 'Duzib268G1359' => 'dzi', 'ECA232G3929' => 'eca', 'ECA236G2210' => 'eca', 'ECA236G2287' => 'eca', 'ECA240G4568' => 'eca', 'ECA247G0894' => 'eca', 'EL10Ac1g00200' => 'bvu', 'EL10Ac1g00886' => 'bvu', 'EL10As1g23091' => 'bvu', 'EL10As1g23092' => 'bvu', 'Eucgr.A01284' => 'egr', 'Eucgr.A01285' => 'egr', 'Eucgr.D02456' => 'egr', 'Eucgr.E00018' => 'egr', 'Eucgr.E01439' => 'egr', 'Eucgr.G02859' => 'egr', 'FAN01G0168' => 'fan', 'FAN01G0453' => 'fan', 'FAN01G2761' => 'fan', 'FAN02G1239' => 'fan', 'FAN03G0645' => 'fan', 'FAN03G2707' => 'fan', 'FAN03G2978' => 'fan', 'FAN04G0227' => 'fan', 'FAN06G0091' => 'fan', 'FAN06G1418' => 'fan', 'FAN06G1512' => 'fan', 'FAN06G1986' => 'fan', 'FAN06G2905' => 'fan', 'FAN06G4325' => 'fan', 'FAN08G0033' => 'fan', 'FAN09G0642' => 'fan', 'FAN10G1763' => 'fan', 'FAN10G2026' => 'fan', 'FAN10G2513' => 'fan', 'FAN10G3402' => 'fan', 'FAN10G3564' => 'fan', 'FAN10G3987' => 'fan', 'FAN13G1490' => 'fan', 'FAN14G5857' => 'fan', 'FAN18G1188' => 'fan', 'FvH4_5g00750' => 'fve', 'FvH4_6g13410' => 'fve', 'FvH4_7g11740' => 'fve', 'FvH4_7g17410' => 'fve', 'FvH4_7g18860' => 'fve', 'Glyma.01G099100' => 'gma', 'Glyma.01G142300' => 'gma', 'Glyma.03G025500' => 'gma', 'Glyma.03G069700' => 'gma', 'Glyma.03G260000' => 'gma', 'Glyma.09G269800' => 'gma', 'Glyma.10G208700' => 'gma', 'Glyma.18G220400' => 'gma', 'Glyma.20G182000' => 'gma', 'Gohir.A01G221726' => 'ghi', 'Gohir.A07G134600' => 'ghi', 'Gohir.A07G146000' => 'ghi', 'Gohir.A08G173900' => 'ghi', 'Gohir.A09G194900' => 'ghi', 'Gohir.A10G204100' => 'ghi', 'Gohir.A11G080600' => 'ghi', 'Gohir.A11G327500' => 'ghi', 'Gohir.A12G101800' => 'ghi', 'Gohir.D01G211200' => 'ghi', 'Gohir.D07G139200' => 'ghi', 'Gohir.D07G152100' => 'ghi', 'Gohir.D08G192600' => 'ghi', 'Gohir.D09G189200' => 'ghi', 'Gohir.D10G212000' => 'ghi', 'Gohir.D11G085200' => 'ghi', 'Gohir.D11G346400' => 'ghi', 'Gohir.D12G104800' => 'ghi', 'Gorai.001G151300' => 'gra', 'Gorai.001G174100' => 'gra', 'Gorai.002G257000' => 'gra', 'Gorai.004G202600' => 'gra', 'Gorai.007G090900' => 'gra', 'Gorai.007G376700' => 'gra', 'Gorai.008G114100' => 'gra', 'Gorai.011G237900' => 'gra', 'GSVIVG01005450001' => 'vvi', 'GSVIVG01016232001' => 'vvi', 'GSVIVG01026157001' => 'vvi', 'GSVIVG01027419001' => 'vvi', 'GSVIVG01027631001' => 'vvi', 'GSVIVG01034143001' => 'vvi', 'HanXRQChr03g0093921' => 'han', 'HanXRQChr04g0120001' => 'han', 'HanXRQChr04g0122561' => 'han', 'HanXRQChr09g0246851' => 'han', 'HanXRQChr10g0293311' => 'han', 'HanXRQChr13g0425231' => 'han', 'HanXRQChr16g0532571' => 'han', 'Haze_09050' => 'cav', 'Haze_15715' => 'cav', 'Haze_15716' => 'cav', 'Haze_16803' => 'cav', 'Haze_16850' => 'cav', 'Hma1.2p1_0301F.1_g118655' => 'hma', 'Hma1.2p1_0309F.1_g120590' => 'hma', 'Hma1.2p1_0936F.1_g238900' => 'hma', 'Hma1.2p1_3552F.1_g336740' => 'hma', 'HPP92_003520' => 'vpl', 'HPP92_006628' => 'vpl', 'HPP92_006645' => 'vpl', 'HPP92_014669' => 'vpl', 'HPP92_015077' => 'vpl', 'Hund16742' => 'sun', 'Hund17022' => 'sun', 'Lalb_Chr02g0152131' => 'lal', 'Lalb_Chr05g0225371' => 'lal', 'Lalb_Chr07g0189841' => 'lal', 'Lalb_Chr07g0192961' => 'lal', 'Lalb_Chr12g0208221' => 'lal', 'Lalb_Chr13g0291211' => 'lal', 'Lalb_Chr13g0291781' => 'lal', 'Lalb_Chr18g0044651' => 'lal', 'Lalb_Chr21g0313731' => 'lal', 'Lj1g0022533' => 'lja', 'Lj2A18T50' => 'lonja', 'Lj2A92G93' => 'lonja', 'Lj3A965T73' => 'lonja', 'Lj3g0000673' => 'lja', 'Lj3g0002666' => 'lja', 'Lj4g0016985' => 'lja', 'Lj5g0003625' => 'lja', 'Lj7A529G36' => 'lonja', 'Lj9A569T49' => 'lonja', 'Lj9A604T63' => 'lonja', 'Lsat_1_v5_gn_3_132060' => 'lsa', 'Lsat_1_v5_gn_4_68941' => 'lsa', 'Lsat_1_v5_gn_5_95580' => 'lsa', 'Lsat_1_v5_gn_7_161' => 'lsa', 'Lsat_1_v5_gn_7_7041' => 'lsa', 'Lsat_1_v5_gn_9_33481' => 'lsa', 'Lsat_1_v5_gn_9_68260' => 'lsa', 'Manes.01G073100' => 'mes', 'Manes.01G266300' => 'mes', 'Manes.02G033300' => 'mes', 'Manes.05G017900' => 'mes', 'Manes.05G046100' => 'mes', 'Manes.08G080900' => 'mes', 'Manes.10G049400' => 'mes', 'Mapoly0009s0186' => 'mpo', 'Mapoly0036s0118' => 'mpo', 'Mapoly0101s0046' => 'mpo', 'MBI04_g30218_MAGBIO' => 'mbi', 'MBI04_g35564_MAGBIO' => 'mbi', 'MBI12_g34011_MAGBIO' => 'mbi', 'MBI14_g04655_MAGBIO' => 'mbi', 'MCO07G653' => 'mco', 'MCO10G173' => 'mco', 'MD01G1087100' => 'mdo', 'MD01G1104200' => 'mdo', 'MD02G1205100' => 'mdo', 'MD04G1079200' => 'mdo', 'MD04G1131400' => 'mdo', 'MD07G1121600' => 'mdo', 'MD07G1157300' => 'mdo', 'MD07G1171000' => 'mdo', 'MD12G1144500' => 'mdo', 'Medtr1g094610' => 'mtr', 'Medtr4g021795' => 'mtr', 'Medtr4g023760' => 'mtr', 'Medtr7g118050' => 'mtr', 'MELO3C005582.2' => 'cme', 'MELO3C005989.2' => 'cme', 'MELO3C006192.2' => 'cme', 'MELO3C009248.2' => 'cme', 'MELO3C019817.2' => 'cme', 'Migut.B01625' => 'egut', 'Migut.B01915' => 'egut', 'Migut.F01721' => 'egut', 'Migut.J00314' => 'egut', 'MSTRG.20742' => 'ama', 'MSTRG.8134' => 'ama', 'Nitab4.5_0000096g0010' => 'nta', 'Nitab4.5_0000202g0030' => 'nta', 'Nitab4.5_0000216g0370' => 'nta', 'Nitab4.5_0000457g0230' => 'nta', 'Nitab4.5_0001702g0170' => 'nta', 'Nitab4.5_0003607g0010' => 'nta', 'Nitab4.5_0004917g0020' => 'nta', 'Nitab4.5_0007059g0010' => 'nta', 'Nitab4.5_0007184g0010' => 'nta', 'Nitab4.5_0007346g0020' => 'nta', 'Nn1g00410' => 'nnu', 'Nn1g01252' => 'nnu', 'Nn2g11168' => 'nnu', 'Nn2g13403' => 'nnu', 'Nn2g13760' => 'nnu', 'Nn4g26380' => 'nnu', 'Oeu000806.2' => 'oeu', 'Oeu005788.1' => 'oeu', 'Oeu006900.3' => 'oeu', 'Oeu007797.1' => 'oeu', 'Oeu011932.1' => 'oeu', 'Oeu022739.1' => 'oeu', 'Oeu037918.1' => 'oeu', 'Oeu055490.2' => 'oeu', 'Os01g0844400' => 'osa', 'Os02g0819100' => 'osa', 'Os03g0804300' => 'osa', 'Os05g0458000' => 'osa', 'Os07g0467800' => 'osa', 'Os12g0602200' => 'osa', 'Peaxi162Scf00013g03444' => 'pax', 'Peaxi162Scf00094g01120' => 'pax', 'Peaxi162Scf00191g01211' => 'pax', 'Peaxi162Scf00238g01110' => 'pax', 'Peaxi162Scf00330g00719' => 'pax', 'Peaxi162Scf00627g00018' => 'pax', 'PGR031G2686' => 'pgr', 'PGR042G0809' => 'pgr', 'PGR142G0193' => 'pgr', 'PGSC0003DMG400011066' => 'stu', 'PGSC0003DMG400012041' => 'stu', 'PGSC0003DMG400013678' => 'stu', 'PGSC0003DMG400023477' => 'stu', 'PGSC0003DMG400025956' => 'stu', 'PGSC0003DMG401019151' => 'stu', 'Phvul.006G116400' => 'pvu', 'Phvul.007G097300' => 'pvu', 'Phvul.010G015000' => 'pvu', 'Phvul.010G083900' => 'pvu', 'Potri.001G117100' => 'ptr', 'Potri.002G147300' => 'ptr', 'Potri.003G115600' => 'ptr', 'Potri.006G087400' => 'ptr', 'Potri.010G226100' => 'ptr', 'Potri.014G069200' => 'ptr', 'Potri.014G104000' => 'ptr', 'Potri.016G100200' => 'ptr', 'Pp3c10_20450' => 'ppa', 'Pp3c1_42400' => 'ppa', 'Pp3c3_24390' => 'ppa', 'Pp3c3_2860' => 'ppa', 'PRCOL_00003193' => 'pco', 'Prupe.2G144500' => 'ppe', 'Prupe.2G195700' => 'ppe', 'Prupe.2G209800' => 'ppe', 'Prupe.5G080000' => 'ppe', 'Prupe.6G257900' => 'ppe', 'Psat3g001160' => 'psa', 'Psat6g181880' => 'psa', 'Psat7g233720' => 'psa', 'PSO063G7587' => 'pso', 'PSO339G2145' => 'pso', 'PSO339G3369' => 'pso', 'PSO478G2747' => 'pso', 'PSO513G0140' => 'pso', 'PSO782G1614' => 'pso', 'PSO782G4889' => 'pso', 'PSO782G5485' => 'pso', 'PSO801G0241' => 'pso', 'QL07p048854' => 'qlo', 'QL08p046745' => 'qlo', 'QL08p052606' => 'qlo', 'QL08p053414' => 'qlo', 'QL08p054868' => 'qlo', 'RcHm_v2.0_Chr1g0350251' => 'rch', 'RcHm_v2.0_Chr1g0360851' => 'rch', 'RcHm_v2.0_Chr1g0362791' => 'rch', 'RcHm_v2.0_Chr3g0466281' => 'rch', 'RcHm_v2.0_Chr7g0201481' => 'rch', 'Rhsim01G0148600' => 'rsi', 'Rhsim05G0194400' => 'rsi', 'Rhsim07G0000700' => 'rsi', 'Rhsim07G0000800' => 'rsi', 'Rhsim07G0027900' => 'rsi', 'Rhsim09G0149500' => 'rsi', 'RhsimUnG0186900' => 'rsi', 'Sabra01G0089900' => 'sbr', 'Sabra02G0114700' => 'sbr', 'Sabra02G0116300' => 'sbr', 'Sabra03G0080100' => 'sbr', 'Sabra08G0024300' => 'sbr', 'Sabra10G0174300' => 'sbr', 'Sabra14G0048900' => 'sbr', 'Sabra14G0076500' => 'sbr', 'SalBow5G2513' => 'sbo', 'Sc01g0002300' => 'sci', 'Sc01g0004450' => 'sci', 'Sc06g0001680' => 'sci', 'Sc23g0003580' => 'sci', 'Sed0000913' => 'sed', 'Sed0001655' => 'sed', 'Sed0007745' => 'sed', 'Sed0010951' => 'sed', 'Sed0017599' => 'sed', 'Sed0021405' => 'sed', 'Sed0022810' => 'sed', 'SEGI_07099' => 'sgi', 'SEGI_11931' => 'sgi', 'SEGI_13187' => 'sgi', 'SEGI_29958' => 'sgi', 'SEGI_36351' => 'sgi', 'SGA_v2.0_scaffold126G33770' => 'sas', 'SGA_v2.0_scaffold153G37003' => 'sas', 'SGA_v2.0_scaffold2G01359' => 'sas', 'SGA_v2.0_scaffold5G03064' => 'sas', 'SGA_v2.0_scaffold95G28903' => 'sas', 'SHI12701' => 'shi', 'SHI26410' => 'shi', 'SHI38997' => 'shi', 'SHI53759' => 'shi', 'SHI53886' => 'shi', 'SHI54714' => 'shi', 'SMO011G0041' => 'smo', 'SMO146G0251' => 'smo', 'SMO160G0004' => 'smo', 'SMO174G0057' => 'smo', 'SMO244G0089' => 'smo', 'SMO296G0011' => 'smo', 'Solyc01g091280.3' => 'sly', 'Solyc05g047610.3' => 'sly', 'Solyc05g047640.3' => 'sly', 'Solyc05g055630.3' => 'sly', 'Solyc10g018160.2' => 'sly', 'Solyc10g084820.2' => 'sly', 'Solyc10g086565.2' => 'sly', 'Sopen01g037030' => 'spe', 'Sopen05g027920' => 'spe', 'Sopen05g034070' => 'spe', 'Sopen10g007260' => 'spe', 'Sopen10g034260' => 'spe', 'Sopen10g035950' => 'spe', 'Sp3g07710' => 'spa', 'Sp4g27420' => 'spa', 'Sp5g02450' => 'spa', 'Sp6g01280' => 'spa', 'Sp6g38480' => 'spa', 'Sp7g20780' => 'spa', 'TAR374G1413' => 'tar', 'TAR623G1777' => 'tar', 'TAR629G2370' => 'tar', 'TAR633G1759' => 'tar', 'TAR636G3387' => 'tar', 'THA.LOC104802447' => 'tha', 'THA.LOC104813916' => 'tha', 'THA.LOC104816423' => 'tha', 'THA.LOC104817246' => 'tha', 'THA.LOC104825895' => 'tha', 'Thecc.01G335200' => 'tca', 'Thecc.01G377400' => 'tca', 'Thecc.03G262200' => 'tca', 'Thecc.05G036800' => 'tca', 'Thecc.10G080500' => 'tca', 'Thecc.10G080800' => 'tca', 'Thhalv10001560m.g' => 'esa', 'Thhalv10006120m.g' => 'esa', 'Thhalv10014375m.g' => 'esa', 'Thhalv10021264m.g' => 'esa', 'Thhalv10028856m.g' => 'esa', 'TPR.G1914' => 'tpr', 'TPR.G4757' => 'tpr', 'TPR.G5595' => 'tpr', 'TWI14G0952' => 'twi', 'TWI14G1307' => 'twi', 'TWI38G2143' => 'twi', 'TWI59G0826' => 'twi', 'TWI77G0527' => 'twi', 'TWI81G0150' => 'twi', 'unitig_21.g21018' => 'ugi', 'unitig_26.g9725' => 'ugi', 'unitig_744.g24653' => 'ugi', 'unitig_749.g13778' => 'ugi', 'unitig_899.g15035' => 'ugi', 'vmacro04296' => 'vma', 'vmacro04852' => 'vma', 'vmacro13404' => 'vma', 'vmacro20169' => 'vma', 'vmacro21014' => 'vma', 'VMungo0331G0237' => 'vmu', 'VMungo0331G0706' => 'vmu', 'VMungo0331G1361' => 'vmu', 'VMungo0331G1489' => 'vmu', 'VMungo0540G1037' => 'vmu', 'VMungo0720G2487' => 'vmu', 'VMungo0720G2721' => 'vmu', 'Zm00001eb086860' => 'zma', 'Zm00001eb104760' => 'zma', 'Zm00001eb148220' => 'zma', 'Zm00001eb259030' => 'zma', 'Zm00001eb289590' => 'zma', 'Zm00001eb420150' => 'zma' ) $gf_id = 'HOM05D000968' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000968' ) $data_identifier = 'HOM05D000968' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 19, 'bol' => (int) 9, 'bra' => (int) 12, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 5, 'ccan' => (int) 7, 'cde' => (int) 5, 'cfa' => (int) 8, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 4, 'dca' => (int) 5, 'din' => (int) 5, 'dzi' => (int) 12, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 25, 'fve' => (int) 5, 'gma' => (int) 9, 'ghi' => (int) 18, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 7, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 5, 'sun' => (int) 2, 'lal' => (int) 9, 'lja' => (int) 5, 'lonja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 9, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 2, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 3, 'stu' => (int) 6, 'pvu' => (int) 4, 'ptr' => (int) 8, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 3, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 1, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 5, 'sas' => (int) 5, 'shi' => (int) 6, 'smo' => (int) 6, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 3, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420150' $species_info = array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ) $local_species = 'mbi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000968', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p31690' => 'bna', 'A03p36040' => 'bna', 'A03p53730' => 'bna', 'A04p01410' => 'bna', 'A05p05420' => 'bna', 'A05p39630' => 'bna', 'A05p39640' => 'bna', 'A09p00970' => 'bna', 'A09p53060' => 'bna', 'A10p31890' => 'bna', 'Aa31LG10G15040' => 'aar', 'Aa31LG1G21090' => 'aar', 'Aa31LG1G26900' => 'aar', 'Aa31LG3G1820' => 'aar', 'Aa31LG5G1100' => 'aar', 'Aa31LG6G4740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2265' => 'aag', 'Actinidia07998' => 'ach', 'Actinidia11266' => 'ach', 'Actinidia12682' => 'ach', 'Actinidia26479' => 'ach', 'Actinidia31406' => 'ach', 'Actinidia32437' => 'ach', 'Actinidia38862' => 'ach', 'Ah.05g174230' => 'amhyb', 'Ah.05g179070' => 'amhyb', 'Ah.05g179090' => 'amhyb', 'Ah.12g059950' => 'amhyb', 'AL3G20480' => 'aly', 'AL4G44520' => 'aly', 'AL5G43110' => 'aly', 'AL6G13890' => 'aly', 'AL6G52620' => 'aly', 'AL7G30830' => 'aly', 'Aqoxy1G00899' => 'aox', 'Aqoxy5G04333' => 'aox', 'Aqoxy7G00641' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3IZ0NN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4EF6AW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W9P8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79GA3M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C43NQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFCU6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G95YVJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCHK29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LU1UG8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX91RN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGB4B1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8DA0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9H7JI' => 'arhy', 'AT3G09320' => 'ath', 'AT3G60800' => 'ath', 'AT4G00840' => 'ath', 'AT4G22750' => 'ath', 'AT5G04270' => 'ath', 'ATR0090G003' => 'atr', 'ATR0559G349' => 'atr', 'ATR0680G261' => 'atr', 'ATR0810G048' => 'atr', 'Atru.chr12.831' => 'acertr', 'Atru.chr5.303' => 'acertr', 'Atru.chr5.748' => 'acertr', 'Atru.chr8.1999' => 'acertr', 'Atru.chr9.1436' => 'acertr', 'AUR62004211' => 'cqu', 'AUR62004548' => 'cqu', 'AUR62013637' => 'cqu', 'AUR62022662' => 'cqu', 'AUR62025777' => 'cqu', 'AUR62042386' => 'cqu', 'BcaB01g02310' => 'bca', 'BcaB01g06062' => 'bca', 'BcaB02g08975' => 'bca', 'BcaB02g08980' => 'bca', 'BcaC01g04228' => 'bca', 'BcaC01g06830' => 'bca', 'BcaC02g10186' => 'bca', 'BcaC02g12214' => 'bca', 'BcaC04g24101' => 'bca', 'BcaC05g29520' => 'bca', 'BcaC05g29661' => 'bca', 'BcaC06g32130' => 'bca', 'BcaC06g32131' => 'bca', 'BcaC07g40601' => 'bca', 'BcaC07g42641' => 'bca', 'BcaNung01038' => 'bca', 'BcaNung01676' => 'bca', 'BcaNung02480' => 'bca', 'BcaNung07376' => 'bca', 'BolC3t16146H' => 'bol', 'BolC3t16637H' => 'bol', 'BolC4t22257H' => 'bol', 'BolC4t24728H' => 'bol', 'BolC5t34517H' => 'bol', 'BolC7t45703H' => 'bol', 'BolC8t51166H' => 'bol', 'BolC9t53038H' => 'bol', 'BolC9t60000H' => 'bol', 'BraA01t01345Z' => 'bra', 'BraA01t01346Z' => 'bra', 'BraA01t01348Z' => 'bra', 'BraA03t12347Z' => 'bra', 'BraA03t12775Z' => 'bra', 'BraA03t14439Z' => 'bra', 'BraA04t15860Z' => 'bra', 'BraA05t19511Z' => 'bra', 'BraA05t22746Z' => 'bra', 'BraA09t35767Z' => 'bra', 'BraA09t40732Z' => 'bra', 'BraA10t45233Z' => 'bra', 'C03p38720' => 'bna', 'C03p43680' => 'bna', 'C04p06350' => 'bna', 'C04p31800' => 'bna', 'C05p58680' => 'bna', 'C07p52110' => 'bna', 'C08p35760' => 'bna', 'C09p01050' => 'bna', 'C09p72600' => 'bna', 'CAN.G106.2' => 'can', 'CAN.G1482.1' => 'can', 'CAN.G324.12' => 'can', 'CAN.G388.20' => 'can', 'CAN.G412.7' => 'can', 'CAN.G694.32' => 'can', 'CAN.G92.12' => 'can', 'CANSAT11G2353' => 'cansat', 'CANSAT21G1398' => 'cansat', 'CANSAT56G2456' => 'cansat', 'CANSAT56G3031' => 'cansat', 'CANSAT56G4539' => 'cansat', 'CARHR083680' => 'chi', 'CARHR171190' => 'chi', 'CARHR209010' => 'chi', 'CARHR229680' => 'chi', 'CARHR249490' => 'chi', 'Carub.0003s0844' => 'cru', 'Carub.0005s2755' => 'cru', 'Carub.0006s0322' => 'cru', 'Carub.0006s3586' => 'cru', 'Carub.0007s1855' => 'cru', 'Ca_07808_v3' => 'car', 'Ca_09535_v3' => 'car', 'Ca_10548_v3' => 'car', 'Ca_19913_v3' => 'car', 'Ca_19916_v3' => 'car', 'Ca_19975_v3' => 'car', 'CBR_g22876' => 'cbr', 'CBR_g22879' => 'cbr', 'CBR_g38491' => 'cbr', 'CBR_g54185' => 'cbr', 'CBR_g54190' => 'cbr', 'Cc02_g11020' => 'ccan', 'Cc02_g23920' => 'ccan', 'Cc02_g39860' => 'ccan', 'Cc02_g39870' => 'ccan', 'Cc03_g06760' => 'ccan', 'Cc06_g02450' => 'ccan', 'Cc09_g09450' => 'ccan', 'CDE02G1959' => 'cde', 'CDE04G0600' => 'cde', 'CDE07G1996' => 'cde', 'CDE07G2078' => 'cde', 'CDE11G0611' => 'cde', 'Cfa001683' => 'cfa', 'Cfa001734' => 'cfa', 'Cfa001737' => 'cfa', 'Cfa003751' => 'cfa', 'Cfa012019' => 'cfa', 'Cfa017353' => 'cfa', 'Cfa017732' => 'cfa', 'Cfa022464' => 'cfa', 'Ciclev10012400m.g' => 'ccl', 'Ciclev10021242m.g' => 'ccl', 'Ciclev10021302m.g' => 'ccl', 'Ciclev10021463m.g' => 'ccl', 'Ciclev10032359m.g' => 'ccl', 'CiPaw.01G081000' => 'cil', 'CiPaw.01G262500' => 'cil', 'CiPaw.01G269800' => 'cil', 'CiPaw.02G168400' => 'cil', 'CiPaw.05G119500' => 'cil', 'CiPaw.11G147300' => 'cil', 'ClCG01G003630' => 'cla', 'ClCG05G000510' => 'cla', 'ClCG05G002300' => 'cla', 'ClCG08G007650' => 'cla', 'ClCG10G021250' => 'cla', 'COL.COLO4_06218' => 'col', 'COL.COLO4_12538' => 'col', 'COL.COLO4_14775' => 'col', 'COL.COLO4_23875' => 'col', 'Cpa.g.sc141.16' => 'cpa', 'Cpa.g.sc169.16' => 'cpa', 'Cpa.g.sc244.4' => 'cpa', 'Cpa.g.sc244.5' => 'cpa', 'Cpa.g.sc29.87' => 'cpa', 'Cpa.g.sc53.115' => 'cpa', 'Cre03.g207502' => 'cre', 'Cre06.g277000' => 'cre', 'Cre09.g394050' => 'cre', 'CsaV3_3G007680' => 'csa', 'CsaV3_3G009710' => 'csa', 'CsaV3_3G034790' => 'csa', 'CsaV3_5G003750' => 'csa', 'CsaV3_6G036620' => 'csa', 'CSS0002288' => 'camsi', 'CSS0011250' => 'camsi', 'CSS0021619' => 'camsi', 'CSS0046701' => 'camsi', 'DCAR_006420' => 'dca', 'DCAR_006865' => 'dca', 'DCAR_008558' => 'dca', 'DCAR_028754' => 'dca', 'DCAR_028755' => 'dca', 'Dinv31218' => 'din', 'Dinv32371' => 'din', 'Dinv34250' => 'din', 'Dinv37156' => 'din', 'Dinv43704' => 'din', 'Duzib093G1811' => 'dzi', 'Duzib106G1622' => 'dzi', 'Duzib114G0504' => 'dzi', 'Duzib128G0338' => 'dzi', 'Duzib128G1577' => 'dzi', 'Duzib133G0104' => 'dzi', 'Duzib133G1080' => 'dzi', 'Duzib138G0324' => 'dzi', 'Duzib138G0394' => 'dzi', 'Duzib205G0122' => 'dzi', 'Duzib268G1020' => 'dzi', 'Duzib268G1359' => 'dzi', 'ECA232G3929' => 'eca', 'ECA236G2210' => 'eca', 'ECA236G2287' => 'eca', 'ECA240G4568' => 'eca', 'ECA247G0894' => 'eca', 'EL10Ac1g00200' => 'bvu', 'EL10Ac1g00886' => 'bvu', 'EL10As1g23091' => 'bvu', 'EL10As1g23092' => 'bvu', 'Eucgr.A01284' => 'egr', 'Eucgr.A01285' => 'egr', 'Eucgr.D02456' => 'egr', 'Eucgr.E00018' => 'egr', 'Eucgr.E01439' => 'egr', 'Eucgr.G02859' => 'egr', 'FAN01G0168' => 'fan', 'FAN01G0453' => 'fan', 'FAN01G2761' => 'fan', 'FAN02G1239' => 'fan', 'FAN03G0645' => 'fan', 'FAN03G2707' => 'fan', 'FAN03G2978' => 'fan', 'FAN04G0227' => 'fan', 'FAN06G0091' => 'fan', 'FAN06G1418' => 'fan', 'FAN06G1512' => 'fan', 'FAN06G1986' => 'fan', 'FAN06G2905' => 'fan', 'FAN06G4325' => 'fan', 'FAN08G0033' => 'fan', 'FAN09G0642' => 'fan', 'FAN10G1763' => 'fan', 'FAN10G2026' => 'fan', 'FAN10G2513' => 'fan', 'FAN10G3402' => 'fan', 'FAN10G3564' => 'fan', 'FAN10G3987' => 'fan', 'FAN13G1490' => 'fan', 'FAN14G5857' => 'fan', 'FAN18G1188' => 'fan', 'FvH4_5g00750' => 'fve', 'FvH4_6g13410' => 'fve', 'FvH4_7g11740' => 'fve', 'FvH4_7g17410' => 'fve', 'FvH4_7g18860' => 'fve', 'Glyma.01G099100' => 'gma', 'Glyma.01G142300' => 'gma', 'Glyma.03G025500' => 'gma', 'Glyma.03G069700' => 'gma', 'Glyma.03G260000' => 'gma', 'Glyma.09G269800' => 'gma', 'Glyma.10G208700' => 'gma', 'Glyma.18G220400' => 'gma', 'Glyma.20G182000' => 'gma', 'Gohir.A01G221726' => 'ghi', 'Gohir.A07G134600' => 'ghi', 'Gohir.A07G146000' => 'ghi', 'Gohir.A08G173900' => 'ghi', 'Gohir.A09G194900' => 'ghi', 'Gohir.A10G204100' => 'ghi', 'Gohir.A11G080600' => 'ghi', 'Gohir.A11G327500' => 'ghi', 'Gohir.A12G101800' => 'ghi', 'Gohir.D01G211200' => 'ghi', 'Gohir.D07G139200' => 'ghi', 'Gohir.D07G152100' => 'ghi', 'Gohir.D08G192600' => 'ghi', 'Gohir.D09G189200' => 'ghi', 'Gohir.D10G212000' => 'ghi', 'Gohir.D11G085200' => 'ghi', 'Gohir.D11G346400' => 'ghi', 'Gohir.D12G104800' => 'ghi', 'Gorai.001G151300' => 'gra', 'Gorai.001G174100' => 'gra', 'Gorai.002G257000' => 'gra', 'Gorai.004G202600' => 'gra', 'Gorai.007G090900' => 'gra', 'Gorai.007G376700' => 'gra', 'Gorai.008G114100' => 'gra', 'Gorai.011G237900' => 'gra', 'GSVIVG01005450001' => 'vvi', 'GSVIVG01016232001' => 'vvi', 'GSVIVG01026157001' => 'vvi', 'GSVIVG01027419001' => 'vvi', 'GSVIVG01027631001' => 'vvi', 'GSVIVG01034143001' => 'vvi', 'HanXRQChr03g0093921' => 'han', 'HanXRQChr04g0120001' => 'han', 'HanXRQChr04g0122561' => 'han', 'HanXRQChr09g0246851' => 'han', 'HanXRQChr10g0293311' => 'han', 'HanXRQChr13g0425231' => 'han', 'HanXRQChr16g0532571' => 'han', 'Haze_09050' => 'cav', 'Haze_15715' => 'cav', 'Haze_15716' => 'cav', 'Haze_16803' => 'cav', 'Haze_16850' => 'cav', 'Hma1.2p1_0301F.1_g118655' => 'hma', 'Hma1.2p1_0309F.1_g120590' => 'hma', 'Hma1.2p1_0936F.1_g238900' => 'hma', 'Hma1.2p1_3552F.1_g336740' => 'hma', 'HPP92_003520' => 'vpl', 'HPP92_006628' => 'vpl', 'HPP92_006645' => 'vpl', 'HPP92_014669' => 'vpl', 'HPP92_015077' => 'vpl', 'Hund16742' => 'sun', 'Hund17022' => 'sun', 'Lalb_Chr02g0152131' => 'lal', 'Lalb_Chr05g0225371' => 'lal', 'Lalb_Chr07g0189841' => 'lal', 'Lalb_Chr07g0192961' => 'lal', 'Lalb_Chr12g0208221' => 'lal', 'Lalb_Chr13g0291211' => 'lal', 'Lalb_Chr13g0291781' => 'lal', 'Lalb_Chr18g0044651' => 'lal', 'Lalb_Chr21g0313731' => 'lal', 'Lj1g0022533' => 'lja', 'Lj2A18T50' => 'lonja', 'Lj2A92G93' => 'lonja', 'Lj3A965T73' => 'lonja', 'Lj3g0000673' => 'lja', 'Lj3g0002666' => 'lja', 'Lj4g0016985' => 'lja', 'Lj5g0003625' => 'lja', 'Lj7A529G36' => 'lonja', 'Lj9A569T49' => 'lonja', 'Lj9A604T63' => 'lonja', 'Lsat_1_v5_gn_3_132060' => 'lsa', 'Lsat_1_v5_gn_4_68941' => 'lsa', 'Lsat_1_v5_gn_5_95580' => 'lsa', 'Lsat_1_v5_gn_7_161' => 'lsa', 'Lsat_1_v5_gn_7_7041' => 'lsa', 'Lsat_1_v5_gn_9_33481' => 'lsa', 'Lsat_1_v5_gn_9_68260' => 'lsa', 'Manes.01G073100' => 'mes', 'Manes.01G266300' => 'mes', 'Manes.02G033300' => 'mes', 'Manes.05G017900' => 'mes', 'Manes.05G046100' => 'mes', 'Manes.08G080900' => 'mes', 'Manes.10G049400' => 'mes', 'Mapoly0009s0186' => 'mpo', 'Mapoly0036s0118' => 'mpo', 'Mapoly0101s0046' => 'mpo', 'MBI04_g30218_MAGBIO' => 'mbi', 'MBI04_g35564_MAGBIO' => 'mbi', 'MBI12_g34011_MAGBIO' => 'mbi', 'MBI14_g04655_MAGBIO' => 'mbi', 'MCO07G653' => 'mco', 'MCO10G173' => 'mco', 'MD01G1087100' => 'mdo', 'MD01G1104200' => 'mdo', 'MD02G1205100' => 'mdo', 'MD04G1079200' => 'mdo', 'MD04G1131400' => 'mdo', 'MD07G1121600' => 'mdo', 'MD07G1157300' => 'mdo', 'MD07G1171000' => 'mdo', 'MD12G1144500' => 'mdo', 'Medtr1g094610' => 'mtr', 'Medtr4g021795' => 'mtr', 'Medtr4g023760' => 'mtr', 'Medtr7g118050' => 'mtr', 'MELO3C005582.2' => 'cme', 'MELO3C005989.2' => 'cme', 'MELO3C006192.2' => 'cme', 'MELO3C009248.2' => 'cme', 'MELO3C019817.2' => 'cme', 'Migut.B01625' => 'egut', 'Migut.B01915' => 'egut', 'Migut.F01721' => 'egut', 'Migut.J00314' => 'egut', 'MSTRG.20742' => 'ama', 'MSTRG.8134' => 'ama', 'Nitab4.5_0000096g0010' => 'nta', 'Nitab4.5_0000202g0030' => 'nta', 'Nitab4.5_0000216g0370' => 'nta', 'Nitab4.5_0000457g0230' => 'nta', 'Nitab4.5_0001702g0170' => 'nta', 'Nitab4.5_0003607g0010' => 'nta', 'Nitab4.5_0004917g0020' => 'nta', 'Nitab4.5_0007059g0010' => 'nta', 'Nitab4.5_0007184g0010' => 'nta', 'Nitab4.5_0007346g0020' => 'nta', 'Nn1g00410' => 'nnu', 'Nn1g01252' => 'nnu', 'Nn2g11168' => 'nnu', 'Nn2g13403' => 'nnu', 'Nn2g13760' => 'nnu', 'Nn4g26380' => 'nnu', 'Oeu000806.2' => 'oeu', 'Oeu005788.1' => 'oeu', 'Oeu006900.3' => 'oeu', 'Oeu007797.1' => 'oeu', 'Oeu011932.1' => 'oeu', 'Oeu022739.1' => 'oeu', 'Oeu037918.1' => 'oeu', 'Oeu055490.2' => 'oeu', 'Os01g0844400' => 'osa', 'Os02g0819100' => 'osa', 'Os03g0804300' => 'osa', 'Os05g0458000' => 'osa', 'Os07g0467800' => 'osa', 'Os12g0602200' => 'osa', 'Peaxi162Scf00013g03444' => 'pax', 'Peaxi162Scf00094g01120' => 'pax', 'Peaxi162Scf00191g01211' => 'pax', 'Peaxi162Scf00238g01110' => 'pax', 'Peaxi162Scf00330g00719' => 'pax', 'Peaxi162Scf00627g00018' => 'pax', 'PGR031G2686' => 'pgr', 'PGR042G0809' => 'pgr', 'PGR142G0193' => 'pgr', 'PGSC0003DMG400011066' => 'stu', 'PGSC0003DMG400012041' => 'stu', 'PGSC0003DMG400013678' => 'stu', 'PGSC0003DMG400023477' => 'stu', 'PGSC0003DMG400025956' => 'stu', 'PGSC0003DMG401019151' => 'stu', 'Phvul.006G116400' => 'pvu', 'Phvul.007G097300' => 'pvu', 'Phvul.010G015000' => 'pvu', 'Phvul.010G083900' => 'pvu', 'Potri.001G117100' => 'ptr', 'Potri.002G147300' => 'ptr', 'Potri.003G115600' => 'ptr', 'Potri.006G087400' => 'ptr', 'Potri.010G226100' => 'ptr', 'Potri.014G069200' => 'ptr', 'Potri.014G104000' => 'ptr', 'Potri.016G100200' => 'ptr', 'Pp3c10_20450' => 'ppa', 'Pp3c1_42400' => 'ppa', 'Pp3c3_24390' => 'ppa', 'Pp3c3_2860' => 'ppa', 'PRCOL_00003193' => 'pco', 'Prupe.2G144500' => 'ppe', 'Prupe.2G195700' => 'ppe', 'Prupe.2G209800' => 'ppe', 'Prupe.5G080000' => 'ppe', 'Prupe.6G257900' => 'ppe', 'Psat3g001160' => 'psa', 'Psat6g181880' => 'psa', 'Psat7g233720' => 'psa', 'PSO063G7587' => 'pso', 'PSO339G2145' => 'pso', 'PSO339G3369' => 'pso', 'PSO478G2747' => 'pso', 'PSO513G0140' => 'pso', 'PSO782G1614' => 'pso', 'PSO782G4889' => 'pso', 'PSO782G5485' => 'pso', 'PSO801G0241' => 'pso', 'QL07p048854' => 'qlo', 'QL08p046745' => 'qlo', 'QL08p052606' => 'qlo', 'QL08p053414' => 'qlo', 'QL08p054868' => 'qlo', 'RcHm_v2.0_Chr1g0350251' => 'rch', 'RcHm_v2.0_Chr1g0360851' => 'rch', 'RcHm_v2.0_Chr1g0362791' => 'rch', 'RcHm_v2.0_Chr3g0466281' => 'rch', 'RcHm_v2.0_Chr7g0201481' => 'rch', 'Rhsim01G0148600' => 'rsi', 'Rhsim05G0194400' => 'rsi', 'Rhsim07G0000700' => 'rsi', 'Rhsim07G0000800' => 'rsi', 'Rhsim07G0027900' => 'rsi', 'Rhsim09G0149500' => 'rsi', 'RhsimUnG0186900' => 'rsi', 'Sabra01G0089900' => 'sbr', 'Sabra02G0114700' => 'sbr', 'Sabra02G0116300' => 'sbr', 'Sabra03G0080100' => 'sbr', 'Sabra08G0024300' => 'sbr', 'Sabra10G0174300' => 'sbr', 'Sabra14G0048900' => 'sbr', 'Sabra14G0076500' => 'sbr', 'SalBow5G2513' => 'sbo', 'Sc01g0002300' => 'sci', 'Sc01g0004450' => 'sci', 'Sc06g0001680' => 'sci', 'Sc23g0003580' => 'sci', 'Sed0000913' => 'sed', 'Sed0001655' => 'sed', 'Sed0007745' => 'sed', 'Sed0010951' => 'sed', 'Sed0017599' => 'sed', 'Sed0021405' => 'sed', 'Sed0022810' => 'sed', 'SEGI_07099' => 'sgi', 'SEGI_11931' => 'sgi', 'SEGI_13187' => 'sgi', 'SEGI_29958' => 'sgi', 'SEGI_36351' => 'sgi', 'SGA_v2.0_scaffold126G33770' => 'sas', 'SGA_v2.0_scaffold153G37003' => 'sas', 'SGA_v2.0_scaffold2G01359' => 'sas', 'SGA_v2.0_scaffold5G03064' => 'sas', 'SGA_v2.0_scaffold95G28903' => 'sas', 'SHI12701' => 'shi', 'SHI26410' => 'shi', 'SHI38997' => 'shi', 'SHI53759' => 'shi', 'SHI53886' => 'shi', 'SHI54714' => 'shi', 'SMO011G0041' => 'smo', 'SMO146G0251' => 'smo', 'SMO160G0004' => 'smo', 'SMO174G0057' => 'smo', 'SMO244G0089' => 'smo', 'SMO296G0011' => 'smo', 'Solyc01g091280.3' => 'sly', 'Solyc05g047610.3' => 'sly', 'Solyc05g047640.3' => 'sly', 'Solyc05g055630.3' => 'sly', 'Solyc10g018160.2' => 'sly', 'Solyc10g084820.2' => 'sly', 'Solyc10g086565.2' => 'sly', 'Sopen01g037030' => 'spe', 'Sopen05g027920' => 'spe', 'Sopen05g034070' => 'spe', 'Sopen10g007260' => 'spe', 'Sopen10g034260' => 'spe', 'Sopen10g035950' => 'spe', 'Sp3g07710' => 'spa', 'Sp4g27420' => 'spa', 'Sp5g02450' => 'spa', 'Sp6g01280' => 'spa', 'Sp6g38480' => 'spa', 'Sp7g20780' => 'spa', 'TAR374G1413' => 'tar', 'TAR623G1777' => 'tar', 'TAR629G2370' => 'tar', 'TAR633G1759' => 'tar', 'TAR636G3387' => 'tar', 'THA.LOC104802447' => 'tha', 'THA.LOC104813916' => 'tha', 'THA.LOC104816423' => 'tha', 'THA.LOC104817246' => 'tha', 'THA.LOC104825895' => 'tha', 'Thecc.01G335200' => 'tca', 'Thecc.01G377400' => 'tca', 'Thecc.03G262200' => 'tca', 'Thecc.05G036800' => 'tca', 'Thecc.10G080500' => 'tca', 'Thecc.10G080800' => 'tca', 'Thhalv10001560m.g' => 'esa', 'Thhalv10006120m.g' => 'esa', 'Thhalv10014375m.g' => 'esa', 'Thhalv10021264m.g' => 'esa', 'Thhalv10028856m.g' => 'esa', 'TPR.G1914' => 'tpr', 'TPR.G4757' => 'tpr', 'TPR.G5595' => 'tpr', 'TWI14G0952' => 'twi', 'TWI14G1307' => 'twi', 'TWI38G2143' => 'twi', 'TWI59G0826' => 'twi', 'TWI77G0527' => 'twi', 'TWI81G0150' => 'twi', 'unitig_21.g21018' => 'ugi', 'unitig_26.g9725' => 'ugi', 'unitig_744.g24653' => 'ugi', 'unitig_749.g13778' => 'ugi', 'unitig_899.g15035' => 'ugi', 'vmacro04296' => 'vma', 'vmacro04852' => 'vma', 'vmacro13404' => 'vma', 'vmacro20169' => 'vma', 'vmacro21014' => 'vma', 'VMungo0331G0237' => 'vmu', 'VMungo0331G0706' => 'vmu', 'VMungo0331G1361' => 'vmu', 'VMungo0331G1489' => 'vmu', 'VMungo0540G1037' => 'vmu', 'VMungo0720G2487' => 'vmu', 'VMungo0720G2721' => 'vmu', 'Zm00001eb086860' => 'zma', 'Zm00001eb104760' => 'zma', 'Zm00001eb148220' => 'zma', 'Zm00001eb259030' => 'zma', 'Zm00001eb289590' => 'zma', 'Zm00001eb420150' => 'zma' ), 'gf_id' => 'HOM05D000968', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000968' ), 'data_identifier' => 'HOM05D000968', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000968', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p31690' => 'bna', 'A03p36040' => 'bna', 'A03p53730' => 'bna', 'A04p01410' => 'bna', 'A05p05420' => 'bna', 'A05p39630' => 'bna', 'A05p39640' => 'bna', 'A09p00970' => 'bna', 'A09p53060' => 'bna', 'A10p31890' => 'bna', 'Aa31LG10G15040' => 'aar', 'Aa31LG1G21090' => 'aar', 'Aa31LG1G26900' => 'aar', 'Aa31LG3G1820' => 'aar', 'Aa31LG5G1100' => 'aar', 'Aa31LG6G4740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2265' => 'aag', 'Actinidia07998' => 'ach', 'Actinidia11266' => 'ach', 'Actinidia12682' => 'ach', 'Actinidia26479' => 'ach', 'Actinidia31406' => 'ach', 'Actinidia32437' => 'ach', 'Actinidia38862' => 'ach', 'Ah.05g174230' => 'amhyb', 'Ah.05g179070' => 'amhyb', 'Ah.05g179090' => 'amhyb', 'Ah.12g059950' => 'amhyb', 'AL3G20480' => 'aly', 'AL4G44520' => 'aly', 'AL5G43110' => 'aly', 'AL6G13890' => 'aly', 'AL6G52620' => 'aly', 'AL7G30830' => 'aly', 'Aqoxy1G00899' => 'aox', 'Aqoxy5G04333' => 'aox', 'Aqoxy7G00641' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3IZ0NN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4EF6AW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W9P8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79GA3M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C43NQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFCU6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G95YVJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCHK29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LU1UG8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX91RN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGB4B1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8DA0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9H7JI' => 'arhy', 'AT3G09320' => 'ath', 'AT3G60800' => 'ath', 'AT4G00840' => 'ath', 'AT4G22750' => 'ath', 'AT5G04270' => 'ath', 'ATR0090G003' => 'atr', 'ATR0559G349' => 'atr', 'ATR0680G261' => 'atr', 'ATR0810G048' => 'atr', 'Atru.chr12.831' => 'acertr', 'Atru.chr5.303' => 'acertr', 'Atru.chr5.748' => 'acertr', 'Atru.chr8.1999' => 'acertr', 'Atru.chr9.1436' => 'acertr', 'AUR62004211' => 'cqu', 'AUR62004548' => 'cqu', 'AUR62013637' => 'cqu', 'AUR62022662' => 'cqu', 'AUR62025777' => 'cqu', 'AUR62042386' => 'cqu', 'BcaB01g02310' => 'bca', 'BcaB01g06062' => 'bca', 'BcaB02g08975' => 'bca', 'BcaB02g08980' => 'bca', 'BcaC01g04228' => 'bca', 'BcaC01g06830' => 'bca', 'BcaC02g10186' => 'bca', 'BcaC02g12214' => 'bca', 'BcaC04g24101' => 'bca', 'BcaC05g29520' => 'bca', 'BcaC05g29661' => 'bca', 'BcaC06g32130' => 'bca', 'BcaC06g32131' => 'bca', 'BcaC07g40601' => 'bca', 'BcaC07g42641' => 'bca', 'BcaNung01038' => 'bca', 'BcaNung01676' => 'bca', 'BcaNung02480' => 'bca', 'BcaNung07376' => 'bca', 'BolC3t16146H' => 'bol', 'BolC3t16637H' => 'bol', 'BolC4t22257H' => 'bol', 'BolC4t24728H' => 'bol', 'BolC5t34517H' => 'bol', 'BolC7t45703H' => 'bol', 'BolC8t51166H' => 'bol', 'BolC9t53038H' => 'bol', 'BolC9t60000H' => 'bol', 'BraA01t01345Z' => 'bra', 'BraA01t01346Z' => 'bra', 'BraA01t01348Z' => 'bra', 'BraA03t12347Z' => 'bra', 'BraA03t12775Z' => 'bra', 'BraA03t14439Z' => 'bra', 'BraA04t15860Z' => 'bra', 'BraA05t19511Z' => 'bra', 'BraA05t22746Z' => 'bra', 'BraA09t35767Z' => 'bra', 'BraA09t40732Z' => 'bra', 'BraA10t45233Z' => 'bra', 'C03p38720' => 'bna', 'C03p43680' => 'bna', 'C04p06350' => 'bna', 'C04p31800' => 'bna', 'C05p58680' => 'bna', 'C07p52110' => 'bna', 'C08p35760' => 'bna', 'C09p01050' => 'bna', 'C09p72600' => 'bna', 'CAN.G106.2' => 'can', 'CAN.G1482.1' => 'can', 'CAN.G324.12' => 'can', 'CAN.G388.20' => 'can', 'CAN.G412.7' => 'can', 'CAN.G694.32' => 'can', 'CAN.G92.12' => 'can', 'CANSAT11G2353' => 'cansat', 'CANSAT21G1398' => 'cansat', 'CANSAT56G2456' => 'cansat', 'CANSAT56G3031' => 'cansat', 'CANSAT56G4539' => 'cansat', 'CARHR083680' => 'chi', 'CARHR171190' => 'chi', 'CARHR209010' => 'chi', 'CARHR229680' => 'chi', 'CARHR249490' => 'chi', 'Carub.0003s0844' => 'cru', 'Carub.0005s2755' => 'cru', 'Carub.0006s0322' => 'cru', 'Carub.0006s3586' => 'cru', 'Carub.0007s1855' => 'cru', 'Ca_07808_v3' => 'car', 'Ca_09535_v3' => 'car', 'Ca_10548_v3' => 'car', 'Ca_19913_v3' => 'car', 'Ca_19916_v3' => 'car', 'Ca_19975_v3' => 'car', 'CBR_g22876' => 'cbr', 'CBR_g22879' => 'cbr', 'CBR_g38491' => 'cbr', 'CBR_g54185' => 'cbr', 'CBR_g54190' => 'cbr', 'Cc02_g11020' => 'ccan', 'Cc02_g23920' => 'ccan', 'Cc02_g39860' => 'ccan', 'Cc02_g39870' => 'ccan', 'Cc03_g06760' => 'ccan', 'Cc06_g02450' => 'ccan', 'Cc09_g09450' => 'ccan', 'CDE02G1959' => 'cde', 'CDE04G0600' => 'cde', 'CDE07G1996' => 'cde', 'CDE07G2078' => 'cde', 'CDE11G0611' => 'cde', 'Cfa001683' => 'cfa', 'Cfa001734' => 'cfa', 'Cfa001737' => 'cfa', 'Cfa003751' => 'cfa', 'Cfa012019' => 'cfa', 'Cfa017353' => 'cfa', 'Cfa017732' => 'cfa', 'Cfa022464' => 'cfa', 'Ciclev10012400m.g' => 'ccl', 'Ciclev10021242m.g' => 'ccl', 'Ciclev10021302m.g' => 'ccl', 'Ciclev10021463m.g' => 'ccl', 'Ciclev10032359m.g' => 'ccl', 'CiPaw.01G081000' => 'cil', 'CiPaw.01G262500' => 'cil', 'CiPaw.01G269800' => 'cil', 'CiPaw.02G168400' => 'cil', 'CiPaw.05G119500' => 'cil', 'CiPaw.11G147300' => 'cil', 'ClCG01G003630' => 'cla', 'ClCG05G000510' => 'cla', 'ClCG05G002300' => 'cla', 'ClCG08G007650' => 'cla', 'ClCG10G021250' => 'cla', 'COL.COLO4_06218' => 'col', 'COL.COLO4_12538' => 'col', 'COL.COLO4_14775' => 'col', 'COL.COLO4_23875' => 'col', 'Cpa.g.sc141.16' => 'cpa', 'Cpa.g.sc169.16' => 'cpa', 'Cpa.g.sc244.4' => 'cpa', 'Cpa.g.sc244.5' => 'cpa', 'Cpa.g.sc29.87' => 'cpa', 'Cpa.g.sc53.115' => 'cpa', 'Cre03.g207502' => 'cre', 'Cre06.g277000' => 'cre', 'Cre09.g394050' => 'cre', 'CsaV3_3G007680' => 'csa', 'CsaV3_3G009710' => 'csa', 'CsaV3_3G034790' => 'csa', 'CsaV3_5G003750' => 'csa', 'CsaV3_6G036620' => 'csa', 'CSS0002288' => 'camsi', 'CSS0011250' => 'camsi', 'CSS0021619' => 'camsi', 'CSS0046701' => 'camsi', 'DCAR_006420' => 'dca', 'DCAR_006865' => 'dca', 'DCAR_008558' => 'dca', 'DCAR_028754' => 'dca', 'DCAR_028755' => 'dca', 'Dinv31218' => 'din', 'Dinv32371' => 'din', 'Dinv34250' => 'din', 'Dinv37156' => 'din', 'Dinv43704' => 'din', 'Duzib093G1811' => 'dzi', 'Duzib106G1622' => 'dzi', 'Duzib114G0504' => 'dzi', 'Duzib128G0338' => 'dzi', 'Duzib128G1577' => 'dzi', 'Duzib133G0104' => 'dzi', 'Duzib133G1080' => 'dzi', 'Duzib138G0324' => 'dzi', 'Duzib138G0394' => 'dzi', 'Duzib205G0122' => 'dzi', 'Duzib268G1020' => 'dzi', 'Duzib268G1359' => 'dzi', 'ECA232G3929' => 'eca', 'ECA236G2210' => 'eca', 'ECA236G2287' => 'eca', 'ECA240G4568' => 'eca', 'ECA247G0894' => 'eca', 'EL10Ac1g00200' => 'bvu', 'EL10Ac1g00886' => 'bvu', 'EL10As1g23091' => 'bvu', 'EL10As1g23092' => 'bvu', 'Eucgr.A01284' => 'egr', 'Eucgr.A01285' => 'egr', 'Eucgr.D02456' => 'egr', 'Eucgr.E00018' => 'egr', 'Eucgr.E01439' => 'egr', 'Eucgr.G02859' => 'egr', 'FAN01G0168' => 'fan', 'FAN01G0453' => 'fan', 'FAN01G2761' => 'fan', 'FAN02G1239' => 'fan', 'FAN03G0645' => 'fan', 'FAN03G2707' => 'fan', 'FAN03G2978' => 'fan', 'FAN04G0227' => 'fan', 'FAN06G0091' => 'fan', 'FAN06G1418' => 'fan', 'FAN06G1512' => 'fan', 'FAN06G1986' => 'fan', 'FAN06G2905' => 'fan', 'FAN06G4325' => 'fan', 'FAN08G0033' => 'fan', 'FAN09G0642' => 'fan', 'FAN10G1763' => 'fan', 'FAN10G2026' => 'fan', 'FAN10G2513' => 'fan', 'FAN10G3402' => 'fan', 'FAN10G3564' => 'fan', 'FAN10G3987' => 'fan', 'FAN13G1490' => 'fan', 'FAN14G5857' => 'fan', 'FAN18G1188' => 'fan', 'FvH4_5g00750' => 'fve', 'FvH4_6g13410' => 'fve', 'FvH4_7g11740' => 'fve', 'FvH4_7g17410' => 'fve', 'FvH4_7g18860' => 'fve', 'Glyma.01G099100' => 'gma', 'Glyma.01G142300' => 'gma', 'Glyma.03G025500' => 'gma', 'Glyma.03G069700' => 'gma', 'Glyma.03G260000' => 'gma', 'Glyma.09G269800' => 'gma', 'Glyma.10G208700' => 'gma', 'Glyma.18G220400' => 'gma', 'Glyma.20G182000' => 'gma', 'Gohir.A01G221726' => 'ghi', 'Gohir.A07G134600' => 'ghi', 'Gohir.A07G146000' => 'ghi', 'Gohir.A08G173900' => 'ghi', 'Gohir.A09G194900' => 'ghi', 'Gohir.A10G204100' => 'ghi', 'Gohir.A11G080600' => 'ghi', 'Gohir.A11G327500' => 'ghi', 'Gohir.A12G101800' => 'ghi', 'Gohir.D01G211200' => 'ghi', 'Gohir.D07G139200' => 'ghi', 'Gohir.D07G152100' => 'ghi', 'Gohir.D08G192600' => 'ghi', 'Gohir.D09G189200' => 'ghi', 'Gohir.D10G212000' => 'ghi', 'Gohir.D11G085200' => 'ghi', 'Gohir.D11G346400' => 'ghi', 'Gohir.D12G104800' => 'ghi', 'Gorai.001G151300' => 'gra', 'Gorai.001G174100' => 'gra', 'Gorai.002G257000' => 'gra', 'Gorai.004G202600' => 'gra', 'Gorai.007G090900' => 'gra', 'Gorai.007G376700' => 'gra', 'Gorai.008G114100' => 'gra', 'Gorai.011G237900' => 'gra', 'GSVIVG01005450001' => 'vvi', 'GSVIVG01016232001' => 'vvi', 'GSVIVG01026157001' => 'vvi', 'GSVIVG01027419001' => 'vvi', 'GSVIVG01027631001' => 'vvi', 'GSVIVG01034143001' => 'vvi', 'HanXRQChr03g0093921' => 'han', 'HanXRQChr04g0120001' => 'han', 'HanXRQChr04g0122561' => 'han', 'HanXRQChr09g0246851' => 'han', 'HanXRQChr10g0293311' => 'han', 'HanXRQChr13g0425231' => 'han', 'HanXRQChr16g0532571' => 'han', 'Haze_09050' => 'cav', 'Haze_15715' => 'cav', 'Haze_15716' => 'cav', 'Haze_16803' => 'cav', 'Haze_16850' => 'cav', 'Hma1.2p1_0301F.1_g118655' => 'hma', 'Hma1.2p1_0309F.1_g120590' => 'hma', 'Hma1.2p1_0936F.1_g238900' => 'hma', 'Hma1.2p1_3552F.1_g336740' => 'hma', 'HPP92_003520' => 'vpl', 'HPP92_006628' => 'vpl', 'HPP92_006645' => 'vpl', 'HPP92_014669' => 'vpl', 'HPP92_015077' => 'vpl', 'Hund16742' => 'sun', 'Hund17022' => 'sun', 'Lalb_Chr02g0152131' => 'lal', 'Lalb_Chr05g0225371' => 'lal', 'Lalb_Chr07g0189841' => 'lal', 'Lalb_Chr07g0192961' => 'lal', 'Lalb_Chr12g0208221' => 'lal', 'Lalb_Chr13g0291211' => 'lal', 'Lalb_Chr13g0291781' => 'lal', 'Lalb_Chr18g0044651' => 'lal', 'Lalb_Chr21g0313731' => 'lal', 'Lj1g0022533' => 'lja', 'Lj2A18T50' => 'lonja', 'Lj2A92G93' => 'lonja', 'Lj3A965T73' => 'lonja', 'Lj3g0000673' => 'lja', 'Lj3g0002666' => 'lja', 'Lj4g0016985' => 'lja', 'Lj5g0003625' => 'lja', 'Lj7A529G36' => 'lonja', 'Lj9A569T49' => 'lonja', 'Lj9A604T63' => 'lonja', 'Lsat_1_v5_gn_3_132060' => 'lsa', 'Lsat_1_v5_gn_4_68941' => 'lsa', 'Lsat_1_v5_gn_5_95580' => 'lsa', 'Lsat_1_v5_gn_7_161' => 'lsa', 'Lsat_1_v5_gn_7_7041' => 'lsa', 'Lsat_1_v5_gn_9_33481' => 'lsa', 'Lsat_1_v5_gn_9_68260' => 'lsa', 'Manes.01G073100' => 'mes', 'Manes.01G266300' => 'mes', 'Manes.02G033300' => 'mes', 'Manes.05G017900' => 'mes', 'Manes.05G046100' => 'mes', 'Manes.08G080900' => 'mes', 'Manes.10G049400' => 'mes', 'Mapoly0009s0186' => 'mpo', 'Mapoly0036s0118' => 'mpo', 'Mapoly0101s0046' => 'mpo', 'MBI04_g30218_MAGBIO' => 'mbi', 'MBI04_g35564_MAGBIO' => 'mbi', 'MBI12_g34011_MAGBIO' => 'mbi', 'MBI14_g04655_MAGBIO' => 'mbi', 'MCO07G653' => 'mco', 'MCO10G173' => 'mco', 'MD01G1087100' => 'mdo', 'MD01G1104200' => 'mdo', 'MD02G1205100' => 'mdo', 'MD04G1079200' => 'mdo', 'MD04G1131400' => 'mdo', 'MD07G1121600' => 'mdo', 'MD07G1157300' => 'mdo', 'MD07G1171000' => 'mdo', 'MD12G1144500' => 'mdo', 'Medtr1g094610' => 'mtr', 'Medtr4g021795' => 'mtr', 'Medtr4g023760' => 'mtr', 'Medtr7g118050' => 'mtr', 'MELO3C005582.2' => 'cme', 'MELO3C005989.2' => 'cme', 'MELO3C006192.2' => 'cme', 'MELO3C009248.2' => 'cme', 'MELO3C019817.2' => 'cme', 'Migut.B01625' => 'egut', 'Migut.B01915' => 'egut', 'Migut.F01721' => 'egut', 'Migut.J00314' => 'egut', 'MSTRG.20742' => 'ama', 'MSTRG.8134' => 'ama', 'Nitab4.5_0000096g0010' => 'nta', 'Nitab4.5_0000202g0030' => 'nta', 'Nitab4.5_0000216g0370' => 'nta', 'Nitab4.5_0000457g0230' => 'nta', 'Nitab4.5_0001702g0170' => 'nta', 'Nitab4.5_0003607g0010' => 'nta', 'Nitab4.5_0004917g0020' => 'nta', 'Nitab4.5_0007059g0010' => 'nta', 'Nitab4.5_0007184g0010' => 'nta', 'Nitab4.5_0007346g0020' => 'nta', 'Nn1g00410' => 'nnu', 'Nn1g01252' => 'nnu', 'Nn2g11168' => 'nnu', 'Nn2g13403' => 'nnu', 'Nn2g13760' => 'nnu', 'Nn4g26380' => 'nnu', 'Oeu000806.2' => 'oeu', 'Oeu005788.1' => 'oeu', 'Oeu006900.3' => 'oeu', 'Oeu007797.1' => 'oeu', 'Oeu011932.1' => 'oeu', 'Oeu022739.1' => 'oeu', 'Oeu037918.1' => 'oeu', 'Oeu055490.2' => 'oeu', 'Os01g0844400' => 'osa', 'Os02g0819100' => 'osa', 'Os03g0804300' => 'osa', 'Os05g0458000' => 'osa', 'Os07g0467800' => 'osa', 'Os12g0602200' => 'osa', 'Peaxi162Scf00013g03444' => 'pax', 'Peaxi162Scf00094g01120' => 'pax', 'Peaxi162Scf00191g01211' => 'pax', 'Peaxi162Scf00238g01110' => 'pax', 'Peaxi162Scf00330g00719' => 'pax', 'Peaxi162Scf00627g00018' => 'pax', 'PGR031G2686' => 'pgr', 'PGR042G0809' => 'pgr', 'PGR142G0193' => 'pgr', 'PGSC0003DMG400011066' => 'stu', 'PGSC0003DMG400012041' => 'stu', 'PGSC0003DMG400013678' => 'stu', 'PGSC0003DMG400023477' => 'stu', 'PGSC0003DMG400025956' => 'stu', 'PGSC0003DMG401019151' => 'stu', 'Phvul.006G116400' => 'pvu', 'Phvul.007G097300' => 'pvu', 'Phvul.010G015000' => 'pvu', 'Phvul.010G083900' => 'pvu', 'Potri.001G117100' => 'ptr', 'Potri.002G147300' => 'ptr', 'Potri.003G115600' => 'ptr', 'Potri.006G087400' => 'ptr', 'Potri.010G226100' => 'ptr', 'Potri.014G069200' => 'ptr', 'Potri.014G104000' => 'ptr', 'Potri.016G100200' => 'ptr', 'Pp3c10_20450' => 'ppa', 'Pp3c1_42400' => 'ppa', 'Pp3c3_24390' => 'ppa', 'Pp3c3_2860' => 'ppa', 'PRCOL_00003193' => 'pco', 'Prupe.2G144500' => 'ppe', 'Prupe.2G195700' => 'ppe', 'Prupe.2G209800' => 'ppe', 'Prupe.5G080000' => 'ppe', 'Prupe.6G257900' => 'ppe', 'Psat3g001160' => 'psa', 'Psat6g181880' => 'psa', 'Psat7g233720' => 'psa', 'PSO063G7587' => 'pso', 'PSO339G2145' => 'pso', 'PSO339G3369' => 'pso', 'PSO478G2747' => 'pso', 'PSO513G0140' => 'pso', 'PSO782G1614' => 'pso', 'PSO782G4889' => 'pso', 'PSO782G5485' => 'pso', 'PSO801G0241' => 'pso', 'QL07p048854' => 'qlo', 'QL08p046745' => 'qlo', 'QL08p052606' => 'qlo', 'QL08p053414' => 'qlo', 'QL08p054868' => 'qlo', 'RcHm_v2.0_Chr1g0350251' => 'rch', 'RcHm_v2.0_Chr1g0360851' => 'rch', 'RcHm_v2.0_Chr1g0362791' => 'rch', 'RcHm_v2.0_Chr3g0466281' => 'rch', 'RcHm_v2.0_Chr7g0201481' => 'rch', 'Rhsim01G0148600' => 'rsi', 'Rhsim05G0194400' => 'rsi', 'Rhsim07G0000700' => 'rsi', 'Rhsim07G0000800' => 'rsi', 'Rhsim07G0027900' => 'rsi', 'Rhsim09G0149500' => 'rsi', 'RhsimUnG0186900' => 'rsi', 'Sabra01G0089900' => 'sbr', 'Sabra02G0114700' => 'sbr', 'Sabra02G0116300' => 'sbr', 'Sabra03G0080100' => 'sbr', 'Sabra08G0024300' => 'sbr', 'Sabra10G0174300' => 'sbr', 'Sabra14G0048900' => 'sbr', 'Sabra14G0076500' => 'sbr', 'SalBow5G2513' => 'sbo', 'Sc01g0002300' => 'sci', 'Sc01g0004450' => 'sci', 'Sc06g0001680' => 'sci', 'Sc23g0003580' => 'sci', 'Sed0000913' => 'sed', 'Sed0001655' => 'sed', 'Sed0007745' => 'sed', 'Sed0010951' => 'sed', 'Sed0017599' => 'sed', 'Sed0021405' => 'sed', 'Sed0022810' => 'sed', 'SEGI_07099' => 'sgi', 'SEGI_11931' => 'sgi', 'SEGI_13187' => 'sgi', 'SEGI_29958' => 'sgi', 'SEGI_36351' => 'sgi', 'SGA_v2.0_scaffold126G33770' => 'sas', 'SGA_v2.0_scaffold153G37003' => 'sas', 'SGA_v2.0_scaffold2G01359' => 'sas', 'SGA_v2.0_scaffold5G03064' => 'sas', 'SGA_v2.0_scaffold95G28903' => 'sas', 'SHI12701' => 'shi', 'SHI26410' => 'shi', 'SHI38997' => 'shi', 'SHI53759' => 'shi', 'SHI53886' => 'shi', 'SHI54714' => 'shi', 'SMO011G0041' => 'smo', 'SMO146G0251' => 'smo', 'SMO160G0004' => 'smo', 'SMO174G0057' => 'smo', 'SMO244G0089' => 'smo', 'SMO296G0011' => 'smo', 'Solyc01g091280.3' => 'sly', 'Solyc05g047610.3' => 'sly', 'Solyc05g047640.3' => 'sly', 'Solyc05g055630.3' => 'sly', 'Solyc10g018160.2' => 'sly', 'Solyc10g084820.2' => 'sly', 'Solyc10g086565.2' => 'sly', 'Sopen01g037030' => 'spe', 'Sopen05g027920' => 'spe', 'Sopen05g034070' => 'spe', 'Sopen10g007260' => 'spe', 'Sopen10g034260' => 'spe', 'Sopen10g035950' => 'spe', 'Sp3g07710' => 'spa', 'Sp4g27420' => 'spa', 'Sp5g02450' => 'spa', 'Sp6g01280' => 'spa', 'Sp6g38480' => 'spa', 'Sp7g20780' => 'spa', 'TAR374G1413' => 'tar', 'TAR623G1777' => 'tar', 'TAR629G2370' => 'tar', 'TAR633G1759' => 'tar', 'TAR636G3387' => 'tar', 'THA.LOC104802447' => 'tha', 'THA.LOC104813916' => 'tha', 'THA.LOC104816423' => 'tha', 'THA.LOC104817246' => 'tha', 'THA.LOC104825895' => 'tha', 'Thecc.01G335200' => 'tca', 'Thecc.01G377400' => 'tca', 'Thecc.03G262200' => 'tca', 'Thecc.05G036800' => 'tca', 'Thecc.10G080500' => 'tca', 'Thecc.10G080800' => 'tca', 'Thhalv10001560m.g' => 'esa', 'Thhalv10006120m.g' => 'esa', 'Thhalv10014375m.g' => 'esa', 'Thhalv10021264m.g' => 'esa', 'Thhalv10028856m.g' => 'esa', 'TPR.G1914' => 'tpr', 'TPR.G4757' => 'tpr', 'TPR.G5595' => 'tpr', 'TWI14G0952' => 'twi', 'TWI14G1307' => 'twi', 'TWI38G2143' => 'twi', 'TWI59G0826' => 'twi', 'TWI77G0527' => 'twi', 'TWI81G0150' => 'twi', 'unitig_21.g21018' => 'ugi', 'unitig_26.g9725' => 'ugi', 'unitig_744.g24653' => 'ugi', 'unitig_749.g13778' => 'ugi', 'unitig_899.g15035' => 'ugi', 'vmacro04296' => 'vma', 'vmacro04852' => 'vma', 'vmacro13404' => 'vma', 'vmacro20169' => 'vma', 'vmacro21014' => 'vma', 'VMungo0331G0237' => 'vmu', 'VMungo0331G0706' => 'vmu', 'VMungo0331G1361' => 'vmu', 'VMungo0331G1489' => 'vmu', 'VMungo0540G1037' => 'vmu', 'VMungo0720G2487' => 'vmu', 'VMungo0720G2721' => 'vmu', 'Zm00001eb086860' => 'zma', 'Zm00001eb104760' => 'zma', 'Zm00001eb148220' => 'zma', 'Zm00001eb259030' => 'zma', 'Zm00001eb289590' => 'zma', 'Zm00001eb420150' => 'zma' ) $gf_id = 'HOM05D000968' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000968' ) $data_identifier = 'HOM05D000968' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 19, 'bol' => (int) 9, 'bra' => (int) 12, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 5, 'ccan' => (int) 7, 'cde' => (int) 5, 'cfa' => (int) 8, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 4, 'dca' => (int) 5, 'din' => (int) 5, 'dzi' => (int) 12, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 25, 'fve' => (int) 5, 'gma' => (int) 9, 'ghi' => (int) 18, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 7, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 5, 'sun' => (int) 2, 'lal' => (int) 9, 'lja' => (int) 5, 'lonja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 9, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 2, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 3, 'stu' => (int) 6, 'pvu' => (int) 4, 'ptr' => (int) 8, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 3, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 1, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 5, 'sas' => (int) 5, 'shi' => (int) 6, 'smo' => (int) 6, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 3, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420150' $species_info = array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ) $local_species = 'mdo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000968', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p31690' => 'bna', 'A03p36040' => 'bna', 'A03p53730' => 'bna', 'A04p01410' => 'bna', 'A05p05420' => 'bna', 'A05p39630' => 'bna', 'A05p39640' => 'bna', 'A09p00970' => 'bna', 'A09p53060' => 'bna', 'A10p31890' => 'bna', 'Aa31LG10G15040' => 'aar', 'Aa31LG1G21090' => 'aar', 'Aa31LG1G26900' => 'aar', 'Aa31LG3G1820' => 'aar', 'Aa31LG5G1100' => 'aar', 'Aa31LG6G4740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2265' => 'aag', 'Actinidia07998' => 'ach', 'Actinidia11266' => 'ach', 'Actinidia12682' => 'ach', 'Actinidia26479' => 'ach', 'Actinidia31406' => 'ach', 'Actinidia32437' => 'ach', 'Actinidia38862' => 'ach', 'Ah.05g174230' => 'amhyb', 'Ah.05g179070' => 'amhyb', 'Ah.05g179090' => 'amhyb', 'Ah.12g059950' => 'amhyb', 'AL3G20480' => 'aly', 'AL4G44520' => 'aly', 'AL5G43110' => 'aly', 'AL6G13890' => 'aly', 'AL6G52620' => 'aly', 'AL7G30830' => 'aly', 'Aqoxy1G00899' => 'aox', 'Aqoxy5G04333' => 'aox', 'Aqoxy7G00641' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3IZ0NN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4EF6AW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W9P8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79GA3M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C43NQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFCU6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G95YVJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCHK29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LU1UG8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX91RN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGB4B1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8DA0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9H7JI' => 'arhy', 'AT3G09320' => 'ath', 'AT3G60800' => 'ath', 'AT4G00840' => 'ath', 'AT4G22750' => 'ath', 'AT5G04270' => 'ath', 'ATR0090G003' => 'atr', 'ATR0559G349' => 'atr', 'ATR0680G261' => 'atr', 'ATR0810G048' => 'atr', 'Atru.chr12.831' => 'acertr', 'Atru.chr5.303' => 'acertr', 'Atru.chr5.748' => 'acertr', 'Atru.chr8.1999' => 'acertr', 'Atru.chr9.1436' => 'acertr', 'AUR62004211' => 'cqu', 'AUR62004548' => 'cqu', 'AUR62013637' => 'cqu', 'AUR62022662' => 'cqu', 'AUR62025777' => 'cqu', 'AUR62042386' => 'cqu', 'BcaB01g02310' => 'bca', 'BcaB01g06062' => 'bca', 'BcaB02g08975' => 'bca', 'BcaB02g08980' => 'bca', 'BcaC01g04228' => 'bca', 'BcaC01g06830' => 'bca', 'BcaC02g10186' => 'bca', 'BcaC02g12214' => 'bca', 'BcaC04g24101' => 'bca', 'BcaC05g29520' => 'bca', 'BcaC05g29661' => 'bca', 'BcaC06g32130' => 'bca', 'BcaC06g32131' => 'bca', 'BcaC07g40601' => 'bca', 'BcaC07g42641' => 'bca', 'BcaNung01038' => 'bca', 'BcaNung01676' => 'bca', 'BcaNung02480' => 'bca', 'BcaNung07376' => 'bca', 'BolC3t16146H' => 'bol', 'BolC3t16637H' => 'bol', 'BolC4t22257H' => 'bol', 'BolC4t24728H' => 'bol', 'BolC5t34517H' => 'bol', 'BolC7t45703H' => 'bol', 'BolC8t51166H' => 'bol', 'BolC9t53038H' => 'bol', 'BolC9t60000H' => 'bol', 'BraA01t01345Z' => 'bra', 'BraA01t01346Z' => 'bra', 'BraA01t01348Z' => 'bra', 'BraA03t12347Z' => 'bra', 'BraA03t12775Z' => 'bra', 'BraA03t14439Z' => 'bra', 'BraA04t15860Z' => 'bra', 'BraA05t19511Z' => 'bra', 'BraA05t22746Z' => 'bra', 'BraA09t35767Z' => 'bra', 'BraA09t40732Z' => 'bra', 'BraA10t45233Z' => 'bra', 'C03p38720' => 'bna', 'C03p43680' => 'bna', 'C04p06350' => 'bna', 'C04p31800' => 'bna', 'C05p58680' => 'bna', 'C07p52110' => 'bna', 'C08p35760' => 'bna', 'C09p01050' => 'bna', 'C09p72600' => 'bna', 'CAN.G106.2' => 'can', 'CAN.G1482.1' => 'can', 'CAN.G324.12' => 'can', 'CAN.G388.20' => 'can', 'CAN.G412.7' => 'can', 'CAN.G694.32' => 'can', 'CAN.G92.12' => 'can', 'CANSAT11G2353' => 'cansat', 'CANSAT21G1398' => 'cansat', 'CANSAT56G2456' => 'cansat', 'CANSAT56G3031' => 'cansat', 'CANSAT56G4539' => 'cansat', 'CARHR083680' => 'chi', 'CARHR171190' => 'chi', 'CARHR209010' => 'chi', 'CARHR229680' => 'chi', 'CARHR249490' => 'chi', 'Carub.0003s0844' => 'cru', 'Carub.0005s2755' => 'cru', 'Carub.0006s0322' => 'cru', 'Carub.0006s3586' => 'cru', 'Carub.0007s1855' => 'cru', 'Ca_07808_v3' => 'car', 'Ca_09535_v3' => 'car', 'Ca_10548_v3' => 'car', 'Ca_19913_v3' => 'car', 'Ca_19916_v3' => 'car', 'Ca_19975_v3' => 'car', 'CBR_g22876' => 'cbr', 'CBR_g22879' => 'cbr', 'CBR_g38491' => 'cbr', 'CBR_g54185' => 'cbr', 'CBR_g54190' => 'cbr', 'Cc02_g11020' => 'ccan', 'Cc02_g23920' => 'ccan', 'Cc02_g39860' => 'ccan', 'Cc02_g39870' => 'ccan', 'Cc03_g06760' => 'ccan', 'Cc06_g02450' => 'ccan', 'Cc09_g09450' => 'ccan', 'CDE02G1959' => 'cde', 'CDE04G0600' => 'cde', 'CDE07G1996' => 'cde', 'CDE07G2078' => 'cde', 'CDE11G0611' => 'cde', 'Cfa001683' => 'cfa', 'Cfa001734' => 'cfa', 'Cfa001737' => 'cfa', 'Cfa003751' => 'cfa', 'Cfa012019' => 'cfa', 'Cfa017353' => 'cfa', 'Cfa017732' => 'cfa', 'Cfa022464' => 'cfa', 'Ciclev10012400m.g' => 'ccl', 'Ciclev10021242m.g' => 'ccl', 'Ciclev10021302m.g' => 'ccl', 'Ciclev10021463m.g' => 'ccl', 'Ciclev10032359m.g' => 'ccl', 'CiPaw.01G081000' => 'cil', 'CiPaw.01G262500' => 'cil', 'CiPaw.01G269800' => 'cil', 'CiPaw.02G168400' => 'cil', 'CiPaw.05G119500' => 'cil', 'CiPaw.11G147300' => 'cil', 'ClCG01G003630' => 'cla', 'ClCG05G000510' => 'cla', 'ClCG05G002300' => 'cla', 'ClCG08G007650' => 'cla', 'ClCG10G021250' => 'cla', 'COL.COLO4_06218' => 'col', 'COL.COLO4_12538' => 'col', 'COL.COLO4_14775' => 'col', 'COL.COLO4_23875' => 'col', 'Cpa.g.sc141.16' => 'cpa', 'Cpa.g.sc169.16' => 'cpa', 'Cpa.g.sc244.4' => 'cpa', 'Cpa.g.sc244.5' => 'cpa', 'Cpa.g.sc29.87' => 'cpa', 'Cpa.g.sc53.115' => 'cpa', 'Cre03.g207502' => 'cre', 'Cre06.g277000' => 'cre', 'Cre09.g394050' => 'cre', 'CsaV3_3G007680' => 'csa', 'CsaV3_3G009710' => 'csa', 'CsaV3_3G034790' => 'csa', 'CsaV3_5G003750' => 'csa', 'CsaV3_6G036620' => 'csa', 'CSS0002288' => 'camsi', 'CSS0011250' => 'camsi', 'CSS0021619' => 'camsi', 'CSS0046701' => 'camsi', 'DCAR_006420' => 'dca', 'DCAR_006865' => 'dca', 'DCAR_008558' => 'dca', 'DCAR_028754' => 'dca', 'DCAR_028755' => 'dca', 'Dinv31218' => 'din', 'Dinv32371' => 'din', 'Dinv34250' => 'din', 'Dinv37156' => 'din', 'Dinv43704' => 'din', 'Duzib093G1811' => 'dzi', 'Duzib106G1622' => 'dzi', 'Duzib114G0504' => 'dzi', 'Duzib128G0338' => 'dzi', 'Duzib128G1577' => 'dzi', 'Duzib133G0104' => 'dzi', 'Duzib133G1080' => 'dzi', 'Duzib138G0324' => 'dzi', 'Duzib138G0394' => 'dzi', 'Duzib205G0122' => 'dzi', 'Duzib268G1020' => 'dzi', 'Duzib268G1359' => 'dzi', 'ECA232G3929' => 'eca', 'ECA236G2210' => 'eca', 'ECA236G2287' => 'eca', 'ECA240G4568' => 'eca', 'ECA247G0894' => 'eca', 'EL10Ac1g00200' => 'bvu', 'EL10Ac1g00886' => 'bvu', 'EL10As1g23091' => 'bvu', 'EL10As1g23092' => 'bvu', 'Eucgr.A01284' => 'egr', 'Eucgr.A01285' => 'egr', 'Eucgr.D02456' => 'egr', 'Eucgr.E00018' => 'egr', 'Eucgr.E01439' => 'egr', 'Eucgr.G02859' => 'egr', 'FAN01G0168' => 'fan', 'FAN01G0453' => 'fan', 'FAN01G2761' => 'fan', 'FAN02G1239' => 'fan', 'FAN03G0645' => 'fan', 'FAN03G2707' => 'fan', 'FAN03G2978' => 'fan', 'FAN04G0227' => 'fan', 'FAN06G0091' => 'fan', 'FAN06G1418' => 'fan', 'FAN06G1512' => 'fan', 'FAN06G1986' => 'fan', 'FAN06G2905' => 'fan', 'FAN06G4325' => 'fan', 'FAN08G0033' => 'fan', 'FAN09G0642' => 'fan', 'FAN10G1763' => 'fan', 'FAN10G2026' => 'fan', 'FAN10G2513' => 'fan', 'FAN10G3402' => 'fan', 'FAN10G3564' => 'fan', 'FAN10G3987' => 'fan', 'FAN13G1490' => 'fan', 'FAN14G5857' => 'fan', 'FAN18G1188' => 'fan', 'FvH4_5g00750' => 'fve', 'FvH4_6g13410' => 'fve', 'FvH4_7g11740' => 'fve', 'FvH4_7g17410' => 'fve', 'FvH4_7g18860' => 'fve', 'Glyma.01G099100' => 'gma', 'Glyma.01G142300' => 'gma', 'Glyma.03G025500' => 'gma', 'Glyma.03G069700' => 'gma', 'Glyma.03G260000' => 'gma', 'Glyma.09G269800' => 'gma', 'Glyma.10G208700' => 'gma', 'Glyma.18G220400' => 'gma', 'Glyma.20G182000' => 'gma', 'Gohir.A01G221726' => 'ghi', 'Gohir.A07G134600' => 'ghi', 'Gohir.A07G146000' => 'ghi', 'Gohir.A08G173900' => 'ghi', 'Gohir.A09G194900' => 'ghi', 'Gohir.A10G204100' => 'ghi', 'Gohir.A11G080600' => 'ghi', 'Gohir.A11G327500' => 'ghi', 'Gohir.A12G101800' => 'ghi', 'Gohir.D01G211200' => 'ghi', 'Gohir.D07G139200' => 'ghi', 'Gohir.D07G152100' => 'ghi', 'Gohir.D08G192600' => 'ghi', 'Gohir.D09G189200' => 'ghi', 'Gohir.D10G212000' => 'ghi', 'Gohir.D11G085200' => 'ghi', 'Gohir.D11G346400' => 'ghi', 'Gohir.D12G104800' => 'ghi', 'Gorai.001G151300' => 'gra', 'Gorai.001G174100' => 'gra', 'Gorai.002G257000' => 'gra', 'Gorai.004G202600' => 'gra', 'Gorai.007G090900' => 'gra', 'Gorai.007G376700' => 'gra', 'Gorai.008G114100' => 'gra', 'Gorai.011G237900' => 'gra', 'GSVIVG01005450001' => 'vvi', 'GSVIVG01016232001' => 'vvi', 'GSVIVG01026157001' => 'vvi', 'GSVIVG01027419001' => 'vvi', 'GSVIVG01027631001' => 'vvi', 'GSVIVG01034143001' => 'vvi', 'HanXRQChr03g0093921' => 'han', 'HanXRQChr04g0120001' => 'han', 'HanXRQChr04g0122561' => 'han', 'HanXRQChr09g0246851' => 'han', 'HanXRQChr10g0293311' => 'han', 'HanXRQChr13g0425231' => 'han', 'HanXRQChr16g0532571' => 'han', 'Haze_09050' => 'cav', 'Haze_15715' => 'cav', 'Haze_15716' => 'cav', 'Haze_16803' => 'cav', 'Haze_16850' => 'cav', 'Hma1.2p1_0301F.1_g118655' => 'hma', 'Hma1.2p1_0309F.1_g120590' => 'hma', 'Hma1.2p1_0936F.1_g238900' => 'hma', 'Hma1.2p1_3552F.1_g336740' => 'hma', 'HPP92_003520' => 'vpl', 'HPP92_006628' => 'vpl', 'HPP92_006645' => 'vpl', 'HPP92_014669' => 'vpl', 'HPP92_015077' => 'vpl', 'Hund16742' => 'sun', 'Hund17022' => 'sun', 'Lalb_Chr02g0152131' => 'lal', 'Lalb_Chr05g0225371' => 'lal', 'Lalb_Chr07g0189841' => 'lal', 'Lalb_Chr07g0192961' => 'lal', 'Lalb_Chr12g0208221' => 'lal', 'Lalb_Chr13g0291211' => 'lal', 'Lalb_Chr13g0291781' => 'lal', 'Lalb_Chr18g0044651' => 'lal', 'Lalb_Chr21g0313731' => 'lal', 'Lj1g0022533' => 'lja', 'Lj2A18T50' => 'lonja', 'Lj2A92G93' => 'lonja', 'Lj3A965T73' => 'lonja', 'Lj3g0000673' => 'lja', 'Lj3g0002666' => 'lja', 'Lj4g0016985' => 'lja', 'Lj5g0003625' => 'lja', 'Lj7A529G36' => 'lonja', 'Lj9A569T49' => 'lonja', 'Lj9A604T63' => 'lonja', 'Lsat_1_v5_gn_3_132060' => 'lsa', 'Lsat_1_v5_gn_4_68941' => 'lsa', 'Lsat_1_v5_gn_5_95580' => 'lsa', 'Lsat_1_v5_gn_7_161' => 'lsa', 'Lsat_1_v5_gn_7_7041' => 'lsa', 'Lsat_1_v5_gn_9_33481' => 'lsa', 'Lsat_1_v5_gn_9_68260' => 'lsa', 'Manes.01G073100' => 'mes', 'Manes.01G266300' => 'mes', 'Manes.02G033300' => 'mes', 'Manes.05G017900' => 'mes', 'Manes.05G046100' => 'mes', 'Manes.08G080900' => 'mes', 'Manes.10G049400' => 'mes', 'Mapoly0009s0186' => 'mpo', 'Mapoly0036s0118' => 'mpo', 'Mapoly0101s0046' => 'mpo', 'MBI04_g30218_MAGBIO' => 'mbi', 'MBI04_g35564_MAGBIO' => 'mbi', 'MBI12_g34011_MAGBIO' => 'mbi', 'MBI14_g04655_MAGBIO' => 'mbi', 'MCO07G653' => 'mco', 'MCO10G173' => 'mco', 'MD01G1087100' => 'mdo', 'MD01G1104200' => 'mdo', 'MD02G1205100' => 'mdo', 'MD04G1079200' => 'mdo', 'MD04G1131400' => 'mdo', 'MD07G1121600' => 'mdo', 'MD07G1157300' => 'mdo', 'MD07G1171000' => 'mdo', 'MD12G1144500' => 'mdo', 'Medtr1g094610' => 'mtr', 'Medtr4g021795' => 'mtr', 'Medtr4g023760' => 'mtr', 'Medtr7g118050' => 'mtr', 'MELO3C005582.2' => 'cme', 'MELO3C005989.2' => 'cme', 'MELO3C006192.2' => 'cme', 'MELO3C009248.2' => 'cme', 'MELO3C019817.2' => 'cme', 'Migut.B01625' => 'egut', 'Migut.B01915' => 'egut', 'Migut.F01721' => 'egut', 'Migut.J00314' => 'egut', 'MSTRG.20742' => 'ama', 'MSTRG.8134' => 'ama', 'Nitab4.5_0000096g0010' => 'nta', 'Nitab4.5_0000202g0030' => 'nta', 'Nitab4.5_0000216g0370' => 'nta', 'Nitab4.5_0000457g0230' => 'nta', 'Nitab4.5_0001702g0170' => 'nta', 'Nitab4.5_0003607g0010' => 'nta', 'Nitab4.5_0004917g0020' => 'nta', 'Nitab4.5_0007059g0010' => 'nta', 'Nitab4.5_0007184g0010' => 'nta', 'Nitab4.5_0007346g0020' => 'nta', 'Nn1g00410' => 'nnu', 'Nn1g01252' => 'nnu', 'Nn2g11168' => 'nnu', 'Nn2g13403' => 'nnu', 'Nn2g13760' => 'nnu', 'Nn4g26380' => 'nnu', 'Oeu000806.2' => 'oeu', 'Oeu005788.1' => 'oeu', 'Oeu006900.3' => 'oeu', 'Oeu007797.1' => 'oeu', 'Oeu011932.1' => 'oeu', 'Oeu022739.1' => 'oeu', 'Oeu037918.1' => 'oeu', 'Oeu055490.2' => 'oeu', 'Os01g0844400' => 'osa', 'Os02g0819100' => 'osa', 'Os03g0804300' => 'osa', 'Os05g0458000' => 'osa', 'Os07g0467800' => 'osa', 'Os12g0602200' => 'osa', 'Peaxi162Scf00013g03444' => 'pax', 'Peaxi162Scf00094g01120' => 'pax', 'Peaxi162Scf00191g01211' => 'pax', 'Peaxi162Scf00238g01110' => 'pax', 'Peaxi162Scf00330g00719' => 'pax', 'Peaxi162Scf00627g00018' => 'pax', 'PGR031G2686' => 'pgr', 'PGR042G0809' => 'pgr', 'PGR142G0193' => 'pgr', 'PGSC0003DMG400011066' => 'stu', 'PGSC0003DMG400012041' => 'stu', 'PGSC0003DMG400013678' => 'stu', 'PGSC0003DMG400023477' => 'stu', 'PGSC0003DMG400025956' => 'stu', 'PGSC0003DMG401019151' => 'stu', 'Phvul.006G116400' => 'pvu', 'Phvul.007G097300' => 'pvu', 'Phvul.010G015000' => 'pvu', 'Phvul.010G083900' => 'pvu', 'Potri.001G117100' => 'ptr', 'Potri.002G147300' => 'ptr', 'Potri.003G115600' => 'ptr', 'Potri.006G087400' => 'ptr', 'Potri.010G226100' => 'ptr', 'Potri.014G069200' => 'ptr', 'Potri.014G104000' => 'ptr', 'Potri.016G100200' => 'ptr', 'Pp3c10_20450' => 'ppa', 'Pp3c1_42400' => 'ppa', 'Pp3c3_24390' => 'ppa', 'Pp3c3_2860' => 'ppa', 'PRCOL_00003193' => 'pco', 'Prupe.2G144500' => 'ppe', 'Prupe.2G195700' => 'ppe', 'Prupe.2G209800' => 'ppe', 'Prupe.5G080000' => 'ppe', 'Prupe.6G257900' => 'ppe', 'Psat3g001160' => 'psa', 'Psat6g181880' => 'psa', 'Psat7g233720' => 'psa', 'PSO063G7587' => 'pso', 'PSO339G2145' => 'pso', 'PSO339G3369' => 'pso', 'PSO478G2747' => 'pso', 'PSO513G0140' => 'pso', 'PSO782G1614' => 'pso', 'PSO782G4889' => 'pso', 'PSO782G5485' => 'pso', 'PSO801G0241' => 'pso', 'QL07p048854' => 'qlo', 'QL08p046745' => 'qlo', 'QL08p052606' => 'qlo', 'QL08p053414' => 'qlo', 'QL08p054868' => 'qlo', 'RcHm_v2.0_Chr1g0350251' => 'rch', 'RcHm_v2.0_Chr1g0360851' => 'rch', 'RcHm_v2.0_Chr1g0362791' => 'rch', 'RcHm_v2.0_Chr3g0466281' => 'rch', 'RcHm_v2.0_Chr7g0201481' => 'rch', 'Rhsim01G0148600' => 'rsi', 'Rhsim05G0194400' => 'rsi', 'Rhsim07G0000700' => 'rsi', 'Rhsim07G0000800' => 'rsi', 'Rhsim07G0027900' => 'rsi', 'Rhsim09G0149500' => 'rsi', 'RhsimUnG0186900' => 'rsi', 'Sabra01G0089900' => 'sbr', 'Sabra02G0114700' => 'sbr', 'Sabra02G0116300' => 'sbr', 'Sabra03G0080100' => 'sbr', 'Sabra08G0024300' => 'sbr', 'Sabra10G0174300' => 'sbr', 'Sabra14G0048900' => 'sbr', 'Sabra14G0076500' => 'sbr', 'SalBow5G2513' => 'sbo', 'Sc01g0002300' => 'sci', 'Sc01g0004450' => 'sci', 'Sc06g0001680' => 'sci', 'Sc23g0003580' => 'sci', 'Sed0000913' => 'sed', 'Sed0001655' => 'sed', 'Sed0007745' => 'sed', 'Sed0010951' => 'sed', 'Sed0017599' => 'sed', 'Sed0021405' => 'sed', 'Sed0022810' => 'sed', 'SEGI_07099' => 'sgi', 'SEGI_11931' => 'sgi', 'SEGI_13187' => 'sgi', 'SEGI_29958' => 'sgi', 'SEGI_36351' => 'sgi', 'SGA_v2.0_scaffold126G33770' => 'sas', 'SGA_v2.0_scaffold153G37003' => 'sas', 'SGA_v2.0_scaffold2G01359' => 'sas', 'SGA_v2.0_scaffold5G03064' => 'sas', 'SGA_v2.0_scaffold95G28903' => 'sas', 'SHI12701' => 'shi', 'SHI26410' => 'shi', 'SHI38997' => 'shi', 'SHI53759' => 'shi', 'SHI53886' => 'shi', 'SHI54714' => 'shi', 'SMO011G0041' => 'smo', 'SMO146G0251' => 'smo', 'SMO160G0004' => 'smo', 'SMO174G0057' => 'smo', 'SMO244G0089' => 'smo', 'SMO296G0011' => 'smo', 'Solyc01g091280.3' => 'sly', 'Solyc05g047610.3' => 'sly', 'Solyc05g047640.3' => 'sly', 'Solyc05g055630.3' => 'sly', 'Solyc10g018160.2' => 'sly', 'Solyc10g084820.2' => 'sly', 'Solyc10g086565.2' => 'sly', 'Sopen01g037030' => 'spe', 'Sopen05g027920' => 'spe', 'Sopen05g034070' => 'spe', 'Sopen10g007260' => 'spe', 'Sopen10g034260' => 'spe', 'Sopen10g035950' => 'spe', 'Sp3g07710' => 'spa', 'Sp4g27420' => 'spa', 'Sp5g02450' => 'spa', 'Sp6g01280' => 'spa', 'Sp6g38480' => 'spa', 'Sp7g20780' => 'spa', 'TAR374G1413' => 'tar', 'TAR623G1777' => 'tar', 'TAR629G2370' => 'tar', 'TAR633G1759' => 'tar', 'TAR636G3387' => 'tar', 'THA.LOC104802447' => 'tha', 'THA.LOC104813916' => 'tha', 'THA.LOC104816423' => 'tha', 'THA.LOC104817246' => 'tha', 'THA.LOC104825895' => 'tha', 'Thecc.01G335200' => 'tca', 'Thecc.01G377400' => 'tca', 'Thecc.03G262200' => 'tca', 'Thecc.05G036800' => 'tca', 'Thecc.10G080500' => 'tca', 'Thecc.10G080800' => 'tca', 'Thhalv10001560m.g' => 'esa', 'Thhalv10006120m.g' => 'esa', 'Thhalv10014375m.g' => 'esa', 'Thhalv10021264m.g' => 'esa', 'Thhalv10028856m.g' => 'esa', 'TPR.G1914' => 'tpr', 'TPR.G4757' => 'tpr', 'TPR.G5595' => 'tpr', 'TWI14G0952' => 'twi', 'TWI14G1307' => 'twi', 'TWI38G2143' => 'twi', 'TWI59G0826' => 'twi', 'TWI77G0527' => 'twi', 'TWI81G0150' => 'twi', 'unitig_21.g21018' => 'ugi', 'unitig_26.g9725' => 'ugi', 'unitig_744.g24653' => 'ugi', 'unitig_749.g13778' => 'ugi', 'unitig_899.g15035' => 'ugi', 'vmacro04296' => 'vma', 'vmacro04852' => 'vma', 'vmacro13404' => 'vma', 'vmacro20169' => 'vma', 'vmacro21014' => 'vma', 'VMungo0331G0237' => 'vmu', 'VMungo0331G0706' => 'vmu', 'VMungo0331G1361' => 'vmu', 'VMungo0331G1489' => 'vmu', 'VMungo0540G1037' => 'vmu', 'VMungo0720G2487' => 'vmu', 'VMungo0720G2721' => 'vmu', 'Zm00001eb086860' => 'zma', 'Zm00001eb104760' => 'zma', 'Zm00001eb148220' => 'zma', 'Zm00001eb259030' => 'zma', 'Zm00001eb289590' => 'zma', 'Zm00001eb420150' => 'zma' ), 'gf_id' => 'HOM05D000968', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000968' ), 'data_identifier' => 'HOM05D000968', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000968', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p31690' => 'bna', 'A03p36040' => 'bna', 'A03p53730' => 'bna', 'A04p01410' => 'bna', 'A05p05420' => 'bna', 'A05p39630' => 'bna', 'A05p39640' => 'bna', 'A09p00970' => 'bna', 'A09p53060' => 'bna', 'A10p31890' => 'bna', 'Aa31LG10G15040' => 'aar', 'Aa31LG1G21090' => 'aar', 'Aa31LG1G26900' => 'aar', 'Aa31LG3G1820' => 'aar', 'Aa31LG5G1100' => 'aar', 'Aa31LG6G4740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2265' => 'aag', 'Actinidia07998' => 'ach', 'Actinidia11266' => 'ach', 'Actinidia12682' => 'ach', 'Actinidia26479' => 'ach', 'Actinidia31406' => 'ach', 'Actinidia32437' => 'ach', 'Actinidia38862' => 'ach', 'Ah.05g174230' => 'amhyb', 'Ah.05g179070' => 'amhyb', 'Ah.05g179090' => 'amhyb', 'Ah.12g059950' => 'amhyb', 'AL3G20480' => 'aly', 'AL4G44520' => 'aly', 'AL5G43110' => 'aly', 'AL6G13890' => 'aly', 'AL6G52620' => 'aly', 'AL7G30830' => 'aly', 'Aqoxy1G00899' => 'aox', 'Aqoxy5G04333' => 'aox', 'Aqoxy7G00641' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3IZ0NN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4EF6AW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W9P8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79GA3M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C43NQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFCU6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G95YVJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCHK29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LU1UG8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX91RN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGB4B1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8DA0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9H7JI' => 'arhy', 'AT3G09320' => 'ath', 'AT3G60800' => 'ath', 'AT4G00840' => 'ath', 'AT4G22750' => 'ath', 'AT5G04270' => 'ath', 'ATR0090G003' => 'atr', 'ATR0559G349' => 'atr', 'ATR0680G261' => 'atr', 'ATR0810G048' => 'atr', 'Atru.chr12.831' => 'acertr', 'Atru.chr5.303' => 'acertr', 'Atru.chr5.748' => 'acertr', 'Atru.chr8.1999' => 'acertr', 'Atru.chr9.1436' => 'acertr', 'AUR62004211' => 'cqu', 'AUR62004548' => 'cqu', 'AUR62013637' => 'cqu', 'AUR62022662' => 'cqu', 'AUR62025777' => 'cqu', 'AUR62042386' => 'cqu', 'BcaB01g02310' => 'bca', 'BcaB01g06062' => 'bca', 'BcaB02g08975' => 'bca', 'BcaB02g08980' => 'bca', 'BcaC01g04228' => 'bca', 'BcaC01g06830' => 'bca', 'BcaC02g10186' => 'bca', 'BcaC02g12214' => 'bca', 'BcaC04g24101' => 'bca', 'BcaC05g29520' => 'bca', 'BcaC05g29661' => 'bca', 'BcaC06g32130' => 'bca', 'BcaC06g32131' => 'bca', 'BcaC07g40601' => 'bca', 'BcaC07g42641' => 'bca', 'BcaNung01038' => 'bca', 'BcaNung01676' => 'bca', 'BcaNung02480' => 'bca', 'BcaNung07376' => 'bca', 'BolC3t16146H' => 'bol', 'BolC3t16637H' => 'bol', 'BolC4t22257H' => 'bol', 'BolC4t24728H' => 'bol', 'BolC5t34517H' => 'bol', 'BolC7t45703H' => 'bol', 'BolC8t51166H' => 'bol', 'BolC9t53038H' => 'bol', 'BolC9t60000H' => 'bol', 'BraA01t01345Z' => 'bra', 'BraA01t01346Z' => 'bra', 'BraA01t01348Z' => 'bra', 'BraA03t12347Z' => 'bra', 'BraA03t12775Z' => 'bra', 'BraA03t14439Z' => 'bra', 'BraA04t15860Z' => 'bra', 'BraA05t19511Z' => 'bra', 'BraA05t22746Z' => 'bra', 'BraA09t35767Z' => 'bra', 'BraA09t40732Z' => 'bra', 'BraA10t45233Z' => 'bra', 'C03p38720' => 'bna', 'C03p43680' => 'bna', 'C04p06350' => 'bna', 'C04p31800' => 'bna', 'C05p58680' => 'bna', 'C07p52110' => 'bna', 'C08p35760' => 'bna', 'C09p01050' => 'bna', 'C09p72600' => 'bna', 'CAN.G106.2' => 'can', 'CAN.G1482.1' => 'can', 'CAN.G324.12' => 'can', 'CAN.G388.20' => 'can', 'CAN.G412.7' => 'can', 'CAN.G694.32' => 'can', 'CAN.G92.12' => 'can', 'CANSAT11G2353' => 'cansat', 'CANSAT21G1398' => 'cansat', 'CANSAT56G2456' => 'cansat', 'CANSAT56G3031' => 'cansat', 'CANSAT56G4539' => 'cansat', 'CARHR083680' => 'chi', 'CARHR171190' => 'chi', 'CARHR209010' => 'chi', 'CARHR229680' => 'chi', 'CARHR249490' => 'chi', 'Carub.0003s0844' => 'cru', 'Carub.0005s2755' => 'cru', 'Carub.0006s0322' => 'cru', 'Carub.0006s3586' => 'cru', 'Carub.0007s1855' => 'cru', 'Ca_07808_v3' => 'car', 'Ca_09535_v3' => 'car', 'Ca_10548_v3' => 'car', 'Ca_19913_v3' => 'car', 'Ca_19916_v3' => 'car', 'Ca_19975_v3' => 'car', 'CBR_g22876' => 'cbr', 'CBR_g22879' => 'cbr', 'CBR_g38491' => 'cbr', 'CBR_g54185' => 'cbr', 'CBR_g54190' => 'cbr', 'Cc02_g11020' => 'ccan', 'Cc02_g23920' => 'ccan', 'Cc02_g39860' => 'ccan', 'Cc02_g39870' => 'ccan', 'Cc03_g06760' => 'ccan', 'Cc06_g02450' => 'ccan', 'Cc09_g09450' => 'ccan', 'CDE02G1959' => 'cde', 'CDE04G0600' => 'cde', 'CDE07G1996' => 'cde', 'CDE07G2078' => 'cde', 'CDE11G0611' => 'cde', 'Cfa001683' => 'cfa', 'Cfa001734' => 'cfa', 'Cfa001737' => 'cfa', 'Cfa003751' => 'cfa', 'Cfa012019' => 'cfa', 'Cfa017353' => 'cfa', 'Cfa017732' => 'cfa', 'Cfa022464' => 'cfa', 'Ciclev10012400m.g' => 'ccl', 'Ciclev10021242m.g' => 'ccl', 'Ciclev10021302m.g' => 'ccl', 'Ciclev10021463m.g' => 'ccl', 'Ciclev10032359m.g' => 'ccl', 'CiPaw.01G081000' => 'cil', 'CiPaw.01G262500' => 'cil', 'CiPaw.01G269800' => 'cil', 'CiPaw.02G168400' => 'cil', 'CiPaw.05G119500' => 'cil', 'CiPaw.11G147300' => 'cil', 'ClCG01G003630' => 'cla', 'ClCG05G000510' => 'cla', 'ClCG05G002300' => 'cla', 'ClCG08G007650' => 'cla', 'ClCG10G021250' => 'cla', 'COL.COLO4_06218' => 'col', 'COL.COLO4_12538' => 'col', 'COL.COLO4_14775' => 'col', 'COL.COLO4_23875' => 'col', 'Cpa.g.sc141.16' => 'cpa', 'Cpa.g.sc169.16' => 'cpa', 'Cpa.g.sc244.4' => 'cpa', 'Cpa.g.sc244.5' => 'cpa', 'Cpa.g.sc29.87' => 'cpa', 'Cpa.g.sc53.115' => 'cpa', 'Cre03.g207502' => 'cre', 'Cre06.g277000' => 'cre', 'Cre09.g394050' => 'cre', 'CsaV3_3G007680' => 'csa', 'CsaV3_3G009710' => 'csa', 'CsaV3_3G034790' => 'csa', 'CsaV3_5G003750' => 'csa', 'CsaV3_6G036620' => 'csa', 'CSS0002288' => 'camsi', 'CSS0011250' => 'camsi', 'CSS0021619' => 'camsi', 'CSS0046701' => 'camsi', 'DCAR_006420' => 'dca', 'DCAR_006865' => 'dca', 'DCAR_008558' => 'dca', 'DCAR_028754' => 'dca', 'DCAR_028755' => 'dca', 'Dinv31218' => 'din', 'Dinv32371' => 'din', 'Dinv34250' => 'din', 'Dinv37156' => 'din', 'Dinv43704' => 'din', 'Duzib093G1811' => 'dzi', 'Duzib106G1622' => 'dzi', 'Duzib114G0504' => 'dzi', 'Duzib128G0338' => 'dzi', 'Duzib128G1577' => 'dzi', 'Duzib133G0104' => 'dzi', 'Duzib133G1080' => 'dzi', 'Duzib138G0324' => 'dzi', 'Duzib138G0394' => 'dzi', 'Duzib205G0122' => 'dzi', 'Duzib268G1020' => 'dzi', 'Duzib268G1359' => 'dzi', 'ECA232G3929' => 'eca', 'ECA236G2210' => 'eca', 'ECA236G2287' => 'eca', 'ECA240G4568' => 'eca', 'ECA247G0894' => 'eca', 'EL10Ac1g00200' => 'bvu', 'EL10Ac1g00886' => 'bvu', 'EL10As1g23091' => 'bvu', 'EL10As1g23092' => 'bvu', 'Eucgr.A01284' => 'egr', 'Eucgr.A01285' => 'egr', 'Eucgr.D02456' => 'egr', 'Eucgr.E00018' => 'egr', 'Eucgr.E01439' => 'egr', 'Eucgr.G02859' => 'egr', 'FAN01G0168' => 'fan', 'FAN01G0453' => 'fan', 'FAN01G2761' => 'fan', 'FAN02G1239' => 'fan', 'FAN03G0645' => 'fan', 'FAN03G2707' => 'fan', 'FAN03G2978' => 'fan', 'FAN04G0227' => 'fan', 'FAN06G0091' => 'fan', 'FAN06G1418' => 'fan', 'FAN06G1512' => 'fan', 'FAN06G1986' => 'fan', 'FAN06G2905' => 'fan', 'FAN06G4325' => 'fan', 'FAN08G0033' => 'fan', 'FAN09G0642' => 'fan', 'FAN10G1763' => 'fan', 'FAN10G2026' => 'fan', 'FAN10G2513' => 'fan', 'FAN10G3402' => 'fan', 'FAN10G3564' => 'fan', 'FAN10G3987' => 'fan', 'FAN13G1490' => 'fan', 'FAN14G5857' => 'fan', 'FAN18G1188' => 'fan', 'FvH4_5g00750' => 'fve', 'FvH4_6g13410' => 'fve', 'FvH4_7g11740' => 'fve', 'FvH4_7g17410' => 'fve', 'FvH4_7g18860' => 'fve', 'Glyma.01G099100' => 'gma', 'Glyma.01G142300' => 'gma', 'Glyma.03G025500' => 'gma', 'Glyma.03G069700' => 'gma', 'Glyma.03G260000' => 'gma', 'Glyma.09G269800' => 'gma', 'Glyma.10G208700' => 'gma', 'Glyma.18G220400' => 'gma', 'Glyma.20G182000' => 'gma', 'Gohir.A01G221726' => 'ghi', 'Gohir.A07G134600' => 'ghi', 'Gohir.A07G146000' => 'ghi', 'Gohir.A08G173900' => 'ghi', 'Gohir.A09G194900' => 'ghi', 'Gohir.A10G204100' => 'ghi', 'Gohir.A11G080600' => 'ghi', 'Gohir.A11G327500' => 'ghi', 'Gohir.A12G101800' => 'ghi', 'Gohir.D01G211200' => 'ghi', 'Gohir.D07G139200' => 'ghi', 'Gohir.D07G152100' => 'ghi', 'Gohir.D08G192600' => 'ghi', 'Gohir.D09G189200' => 'ghi', 'Gohir.D10G212000' => 'ghi', 'Gohir.D11G085200' => 'ghi', 'Gohir.D11G346400' => 'ghi', 'Gohir.D12G104800' => 'ghi', 'Gorai.001G151300' => 'gra', 'Gorai.001G174100' => 'gra', 'Gorai.002G257000' => 'gra', 'Gorai.004G202600' => 'gra', 'Gorai.007G090900' => 'gra', 'Gorai.007G376700' => 'gra', 'Gorai.008G114100' => 'gra', 'Gorai.011G237900' => 'gra', 'GSVIVG01005450001' => 'vvi', 'GSVIVG01016232001' => 'vvi', 'GSVIVG01026157001' => 'vvi', 'GSVIVG01027419001' => 'vvi', 'GSVIVG01027631001' => 'vvi', 'GSVIVG01034143001' => 'vvi', 'HanXRQChr03g0093921' => 'han', 'HanXRQChr04g0120001' => 'han', 'HanXRQChr04g0122561' => 'han', 'HanXRQChr09g0246851' => 'han', 'HanXRQChr10g0293311' => 'han', 'HanXRQChr13g0425231' => 'han', 'HanXRQChr16g0532571' => 'han', 'Haze_09050' => 'cav', 'Haze_15715' => 'cav', 'Haze_15716' => 'cav', 'Haze_16803' => 'cav', 'Haze_16850' => 'cav', 'Hma1.2p1_0301F.1_g118655' => 'hma', 'Hma1.2p1_0309F.1_g120590' => 'hma', 'Hma1.2p1_0936F.1_g238900' => 'hma', 'Hma1.2p1_3552F.1_g336740' => 'hma', 'HPP92_003520' => 'vpl', 'HPP92_006628' => 'vpl', 'HPP92_006645' => 'vpl', 'HPP92_014669' => 'vpl', 'HPP92_015077' => 'vpl', 'Hund16742' => 'sun', 'Hund17022' => 'sun', 'Lalb_Chr02g0152131' => 'lal', 'Lalb_Chr05g0225371' => 'lal', 'Lalb_Chr07g0189841' => 'lal', 'Lalb_Chr07g0192961' => 'lal', 'Lalb_Chr12g0208221' => 'lal', 'Lalb_Chr13g0291211' => 'lal', 'Lalb_Chr13g0291781' => 'lal', 'Lalb_Chr18g0044651' => 'lal', 'Lalb_Chr21g0313731' => 'lal', 'Lj1g0022533' => 'lja', 'Lj2A18T50' => 'lonja', 'Lj2A92G93' => 'lonja', 'Lj3A965T73' => 'lonja', 'Lj3g0000673' => 'lja', 'Lj3g0002666' => 'lja', 'Lj4g0016985' => 'lja', 'Lj5g0003625' => 'lja', 'Lj7A529G36' => 'lonja', 'Lj9A569T49' => 'lonja', 'Lj9A604T63' => 'lonja', 'Lsat_1_v5_gn_3_132060' => 'lsa', 'Lsat_1_v5_gn_4_68941' => 'lsa', 'Lsat_1_v5_gn_5_95580' => 'lsa', 'Lsat_1_v5_gn_7_161' => 'lsa', 'Lsat_1_v5_gn_7_7041' => 'lsa', 'Lsat_1_v5_gn_9_33481' => 'lsa', 'Lsat_1_v5_gn_9_68260' => 'lsa', 'Manes.01G073100' => 'mes', 'Manes.01G266300' => 'mes', 'Manes.02G033300' => 'mes', 'Manes.05G017900' => 'mes', 'Manes.05G046100' => 'mes', 'Manes.08G080900' => 'mes', 'Manes.10G049400' => 'mes', 'Mapoly0009s0186' => 'mpo', 'Mapoly0036s0118' => 'mpo', 'Mapoly0101s0046' => 'mpo', 'MBI04_g30218_MAGBIO' => 'mbi', 'MBI04_g35564_MAGBIO' => 'mbi', 'MBI12_g34011_MAGBIO' => 'mbi', 'MBI14_g04655_MAGBIO' => 'mbi', 'MCO07G653' => 'mco', 'MCO10G173' => 'mco', 'MD01G1087100' => 'mdo', 'MD01G1104200' => 'mdo', 'MD02G1205100' => 'mdo', 'MD04G1079200' => 'mdo', 'MD04G1131400' => 'mdo', 'MD07G1121600' => 'mdo', 'MD07G1157300' => 'mdo', 'MD07G1171000' => 'mdo', 'MD12G1144500' => 'mdo', 'Medtr1g094610' => 'mtr', 'Medtr4g021795' => 'mtr', 'Medtr4g023760' => 'mtr', 'Medtr7g118050' => 'mtr', 'MELO3C005582.2' => 'cme', 'MELO3C005989.2' => 'cme', 'MELO3C006192.2' => 'cme', 'MELO3C009248.2' => 'cme', 'MELO3C019817.2' => 'cme', 'Migut.B01625' => 'egut', 'Migut.B01915' => 'egut', 'Migut.F01721' => 'egut', 'Migut.J00314' => 'egut', 'MSTRG.20742' => 'ama', 'MSTRG.8134' => 'ama', 'Nitab4.5_0000096g0010' => 'nta', 'Nitab4.5_0000202g0030' => 'nta', 'Nitab4.5_0000216g0370' => 'nta', 'Nitab4.5_0000457g0230' => 'nta', 'Nitab4.5_0001702g0170' => 'nta', 'Nitab4.5_0003607g0010' => 'nta', 'Nitab4.5_0004917g0020' => 'nta', 'Nitab4.5_0007059g0010' => 'nta', 'Nitab4.5_0007184g0010' => 'nta', 'Nitab4.5_0007346g0020' => 'nta', 'Nn1g00410' => 'nnu', 'Nn1g01252' => 'nnu', 'Nn2g11168' => 'nnu', 'Nn2g13403' => 'nnu', 'Nn2g13760' => 'nnu', 'Nn4g26380' => 'nnu', 'Oeu000806.2' => 'oeu', 'Oeu005788.1' => 'oeu', 'Oeu006900.3' => 'oeu', 'Oeu007797.1' => 'oeu', 'Oeu011932.1' => 'oeu', 'Oeu022739.1' => 'oeu', 'Oeu037918.1' => 'oeu', 'Oeu055490.2' => 'oeu', 'Os01g0844400' => 'osa', 'Os02g0819100' => 'osa', 'Os03g0804300' => 'osa', 'Os05g0458000' => 'osa', 'Os07g0467800' => 'osa', 'Os12g0602200' => 'osa', 'Peaxi162Scf00013g03444' => 'pax', 'Peaxi162Scf00094g01120' => 'pax', 'Peaxi162Scf00191g01211' => 'pax', 'Peaxi162Scf00238g01110' => 'pax', 'Peaxi162Scf00330g00719' => 'pax', 'Peaxi162Scf00627g00018' => 'pax', 'PGR031G2686' => 'pgr', 'PGR042G0809' => 'pgr', 'PGR142G0193' => 'pgr', 'PGSC0003DMG400011066' => 'stu', 'PGSC0003DMG400012041' => 'stu', 'PGSC0003DMG400013678' => 'stu', 'PGSC0003DMG400023477' => 'stu', 'PGSC0003DMG400025956' => 'stu', 'PGSC0003DMG401019151' => 'stu', 'Phvul.006G116400' => 'pvu', 'Phvul.007G097300' => 'pvu', 'Phvul.010G015000' => 'pvu', 'Phvul.010G083900' => 'pvu', 'Potri.001G117100' => 'ptr', 'Potri.002G147300' => 'ptr', 'Potri.003G115600' => 'ptr', 'Potri.006G087400' => 'ptr', 'Potri.010G226100' => 'ptr', 'Potri.014G069200' => 'ptr', 'Potri.014G104000' => 'ptr', 'Potri.016G100200' => 'ptr', 'Pp3c10_20450' => 'ppa', 'Pp3c1_42400' => 'ppa', 'Pp3c3_24390' => 'ppa', 'Pp3c3_2860' => 'ppa', 'PRCOL_00003193' => 'pco', 'Prupe.2G144500' => 'ppe', 'Prupe.2G195700' => 'ppe', 'Prupe.2G209800' => 'ppe', 'Prupe.5G080000' => 'ppe', 'Prupe.6G257900' => 'ppe', 'Psat3g001160' => 'psa', 'Psat6g181880' => 'psa', 'Psat7g233720' => 'psa', 'PSO063G7587' => 'pso', 'PSO339G2145' => 'pso', 'PSO339G3369' => 'pso', 'PSO478G2747' => 'pso', 'PSO513G0140' => 'pso', 'PSO782G1614' => 'pso', 'PSO782G4889' => 'pso', 'PSO782G5485' => 'pso', 'PSO801G0241' => 'pso', 'QL07p048854' => 'qlo', 'QL08p046745' => 'qlo', 'QL08p052606' => 'qlo', 'QL08p053414' => 'qlo', 'QL08p054868' => 'qlo', 'RcHm_v2.0_Chr1g0350251' => 'rch', 'RcHm_v2.0_Chr1g0360851' => 'rch', 'RcHm_v2.0_Chr1g0362791' => 'rch', 'RcHm_v2.0_Chr3g0466281' => 'rch', 'RcHm_v2.0_Chr7g0201481' => 'rch', 'Rhsim01G0148600' => 'rsi', 'Rhsim05G0194400' => 'rsi', 'Rhsim07G0000700' => 'rsi', 'Rhsim07G0000800' => 'rsi', 'Rhsim07G0027900' => 'rsi', 'Rhsim09G0149500' => 'rsi', 'RhsimUnG0186900' => 'rsi', 'Sabra01G0089900' => 'sbr', 'Sabra02G0114700' => 'sbr', 'Sabra02G0116300' => 'sbr', 'Sabra03G0080100' => 'sbr', 'Sabra08G0024300' => 'sbr', 'Sabra10G0174300' => 'sbr', 'Sabra14G0048900' => 'sbr', 'Sabra14G0076500' => 'sbr', 'SalBow5G2513' => 'sbo', 'Sc01g0002300' => 'sci', 'Sc01g0004450' => 'sci', 'Sc06g0001680' => 'sci', 'Sc23g0003580' => 'sci', 'Sed0000913' => 'sed', 'Sed0001655' => 'sed', 'Sed0007745' => 'sed', 'Sed0010951' => 'sed', 'Sed0017599' => 'sed', 'Sed0021405' => 'sed', 'Sed0022810' => 'sed', 'SEGI_07099' => 'sgi', 'SEGI_11931' => 'sgi', 'SEGI_13187' => 'sgi', 'SEGI_29958' => 'sgi', 'SEGI_36351' => 'sgi', 'SGA_v2.0_scaffold126G33770' => 'sas', 'SGA_v2.0_scaffold153G37003' => 'sas', 'SGA_v2.0_scaffold2G01359' => 'sas', 'SGA_v2.0_scaffold5G03064' => 'sas', 'SGA_v2.0_scaffold95G28903' => 'sas', 'SHI12701' => 'shi', 'SHI26410' => 'shi', 'SHI38997' => 'shi', 'SHI53759' => 'shi', 'SHI53886' => 'shi', 'SHI54714' => 'shi', 'SMO011G0041' => 'smo', 'SMO146G0251' => 'smo', 'SMO160G0004' => 'smo', 'SMO174G0057' => 'smo', 'SMO244G0089' => 'smo', 'SMO296G0011' => 'smo', 'Solyc01g091280.3' => 'sly', 'Solyc05g047610.3' => 'sly', 'Solyc05g047640.3' => 'sly', 'Solyc05g055630.3' => 'sly', 'Solyc10g018160.2' => 'sly', 'Solyc10g084820.2' => 'sly', 'Solyc10g086565.2' => 'sly', 'Sopen01g037030' => 'spe', 'Sopen05g027920' => 'spe', 'Sopen05g034070' => 'spe', 'Sopen10g007260' => 'spe', 'Sopen10g034260' => 'spe', 'Sopen10g035950' => 'spe', 'Sp3g07710' => 'spa', 'Sp4g27420' => 'spa', 'Sp5g02450' => 'spa', 'Sp6g01280' => 'spa', 'Sp6g38480' => 'spa', 'Sp7g20780' => 'spa', 'TAR374G1413' => 'tar', 'TAR623G1777' => 'tar', 'TAR629G2370' => 'tar', 'TAR633G1759' => 'tar', 'TAR636G3387' => 'tar', 'THA.LOC104802447' => 'tha', 'THA.LOC104813916' => 'tha', 'THA.LOC104816423' => 'tha', 'THA.LOC104817246' => 'tha', 'THA.LOC104825895' => 'tha', 'Thecc.01G335200' => 'tca', 'Thecc.01G377400' => 'tca', 'Thecc.03G262200' => 'tca', 'Thecc.05G036800' => 'tca', 'Thecc.10G080500' => 'tca', 'Thecc.10G080800' => 'tca', 'Thhalv10001560m.g' => 'esa', 'Thhalv10006120m.g' => 'esa', 'Thhalv10014375m.g' => 'esa', 'Thhalv10021264m.g' => 'esa', 'Thhalv10028856m.g' => 'esa', 'TPR.G1914' => 'tpr', 'TPR.G4757' => 'tpr', 'TPR.G5595' => 'tpr', 'TWI14G0952' => 'twi', 'TWI14G1307' => 'twi', 'TWI38G2143' => 'twi', 'TWI59G0826' => 'twi', 'TWI77G0527' => 'twi', 'TWI81G0150' => 'twi', 'unitig_21.g21018' => 'ugi', 'unitig_26.g9725' => 'ugi', 'unitig_744.g24653' => 'ugi', 'unitig_749.g13778' => 'ugi', 'unitig_899.g15035' => 'ugi', 'vmacro04296' => 'vma', 'vmacro04852' => 'vma', 'vmacro13404' => 'vma', 'vmacro20169' => 'vma', 'vmacro21014' => 'vma', 'VMungo0331G0237' => 'vmu', 'VMungo0331G0706' => 'vmu', 'VMungo0331G1361' => 'vmu', 'VMungo0331G1489' => 'vmu', 'VMungo0540G1037' => 'vmu', 'VMungo0720G2487' => 'vmu', 'VMungo0720G2721' => 'vmu', 'Zm00001eb086860' => 'zma', 'Zm00001eb104760' => 'zma', 'Zm00001eb148220' => 'zma', 'Zm00001eb259030' => 'zma', 'Zm00001eb289590' => 'zma', 'Zm00001eb420150' => 'zma' ) $gf_id = 'HOM05D000968' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000968' ) $data_identifier = 'HOM05D000968' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 19, 'bol' => (int) 9, 'bra' => (int) 12, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 5, 'ccan' => (int) 7, 'cde' => (int) 5, 'cfa' => (int) 8, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 4, 'dca' => (int) 5, 'din' => (int) 5, 'dzi' => (int) 12, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 25, 'fve' => (int) 5, 'gma' => (int) 9, 'ghi' => (int) 18, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 7, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 5, 'sun' => (int) 2, 'lal' => (int) 9, 'lja' => (int) 5, 'lonja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 9, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 2, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 3, 'stu' => (int) 6, 'pvu' => (int) 4, 'ptr' => (int) 8, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 3, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 1, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 5, 'sas' => (int) 5, 'shi' => (int) 6, 'smo' => (int) 6, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 3, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420150' $species_info = array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ) $local_species = 'mdo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000968', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p31690' => 'bna', 'A03p36040' => 'bna', 'A03p53730' => 'bna', 'A04p01410' => 'bna', 'A05p05420' => 'bna', 'A05p39630' => 'bna', 'A05p39640' => 'bna', 'A09p00970' => 'bna', 'A09p53060' => 'bna', 'A10p31890' => 'bna', 'Aa31LG10G15040' => 'aar', 'Aa31LG1G21090' => 'aar', 'Aa31LG1G26900' => 'aar', 'Aa31LG3G1820' => 'aar', 'Aa31LG5G1100' => 'aar', 'Aa31LG6G4740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2265' => 'aag', 'Actinidia07998' => 'ach', 'Actinidia11266' => 'ach', 'Actinidia12682' => 'ach', 'Actinidia26479' => 'ach', 'Actinidia31406' => 'ach', 'Actinidia32437' => 'ach', 'Actinidia38862' => 'ach', 'Ah.05g174230' => 'amhyb', 'Ah.05g179070' => 'amhyb', 'Ah.05g179090' => 'amhyb', 'Ah.12g059950' => 'amhyb', 'AL3G20480' => 'aly', 'AL4G44520' => 'aly', 'AL5G43110' => 'aly', 'AL6G13890' => 'aly', 'AL6G52620' => 'aly', 'AL7G30830' => 'aly', 'Aqoxy1G00899' => 'aox', 'Aqoxy5G04333' => 'aox', 'Aqoxy7G00641' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3IZ0NN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4EF6AW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W9P8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79GA3M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C43NQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFCU6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G95YVJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCHK29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LU1UG8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX91RN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGB4B1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8DA0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9H7JI' => 'arhy', 'AT3G09320' => 'ath', 'AT3G60800' => 'ath', 'AT4G00840' => 'ath', 'AT4G22750' => 'ath', 'AT5G04270' => 'ath', 'ATR0090G003' => 'atr', 'ATR0559G349' => 'atr', 'ATR0680G261' => 'atr', 'ATR0810G048' => 'atr', 'Atru.chr12.831' => 'acertr', 'Atru.chr5.303' => 'acertr', 'Atru.chr5.748' => 'acertr', 'Atru.chr8.1999' => 'acertr', 'Atru.chr9.1436' => 'acertr', 'AUR62004211' => 'cqu', 'AUR62004548' => 'cqu', 'AUR62013637' => 'cqu', 'AUR62022662' => 'cqu', 'AUR62025777' => 'cqu', 'AUR62042386' => 'cqu', 'BcaB01g02310' => 'bca', 'BcaB01g06062' => 'bca', 'BcaB02g08975' => 'bca', 'BcaB02g08980' => 'bca', 'BcaC01g04228' => 'bca', 'BcaC01g06830' => 'bca', 'BcaC02g10186' => 'bca', 'BcaC02g12214' => 'bca', 'BcaC04g24101' => 'bca', 'BcaC05g29520' => 'bca', 'BcaC05g29661' => 'bca', 'BcaC06g32130' => 'bca', 'BcaC06g32131' => 'bca', 'BcaC07g40601' => 'bca', 'BcaC07g42641' => 'bca', 'BcaNung01038' => 'bca', 'BcaNung01676' => 'bca', 'BcaNung02480' => 'bca', 'BcaNung07376' => 'bca', 'BolC3t16146H' => 'bol', 'BolC3t16637H' => 'bol', 'BolC4t22257H' => 'bol', 'BolC4t24728H' => 'bol', 'BolC5t34517H' => 'bol', 'BolC7t45703H' => 'bol', 'BolC8t51166H' => 'bol', 'BolC9t53038H' => 'bol', 'BolC9t60000H' => 'bol', 'BraA01t01345Z' => 'bra', 'BraA01t01346Z' => 'bra', 'BraA01t01348Z' => 'bra', 'BraA03t12347Z' => 'bra', 'BraA03t12775Z' => 'bra', 'BraA03t14439Z' => 'bra', 'BraA04t15860Z' => 'bra', 'BraA05t19511Z' => 'bra', 'BraA05t22746Z' => 'bra', 'BraA09t35767Z' => 'bra', 'BraA09t40732Z' => 'bra', 'BraA10t45233Z' => 'bra', 'C03p38720' => 'bna', 'C03p43680' => 'bna', 'C04p06350' => 'bna', 'C04p31800' => 'bna', 'C05p58680' => 'bna', 'C07p52110' => 'bna', 'C08p35760' => 'bna', 'C09p01050' => 'bna', 'C09p72600' => 'bna', 'CAN.G106.2' => 'can', 'CAN.G1482.1' => 'can', 'CAN.G324.12' => 'can', 'CAN.G388.20' => 'can', 'CAN.G412.7' => 'can', 'CAN.G694.32' => 'can', 'CAN.G92.12' => 'can', 'CANSAT11G2353' => 'cansat', 'CANSAT21G1398' => 'cansat', 'CANSAT56G2456' => 'cansat', 'CANSAT56G3031' => 'cansat', 'CANSAT56G4539' => 'cansat', 'CARHR083680' => 'chi', 'CARHR171190' => 'chi', 'CARHR209010' => 'chi', 'CARHR229680' => 'chi', 'CARHR249490' => 'chi', 'Carub.0003s0844' => 'cru', 'Carub.0005s2755' => 'cru', 'Carub.0006s0322' => 'cru', 'Carub.0006s3586' => 'cru', 'Carub.0007s1855' => 'cru', 'Ca_07808_v3' => 'car', 'Ca_09535_v3' => 'car', 'Ca_10548_v3' => 'car', 'Ca_19913_v3' => 'car', 'Ca_19916_v3' => 'car', 'Ca_19975_v3' => 'car', 'CBR_g22876' => 'cbr', 'CBR_g22879' => 'cbr', 'CBR_g38491' => 'cbr', 'CBR_g54185' => 'cbr', 'CBR_g54190' => 'cbr', 'Cc02_g11020' => 'ccan', 'Cc02_g23920' => 'ccan', 'Cc02_g39860' => 'ccan', 'Cc02_g39870' => 'ccan', 'Cc03_g06760' => 'ccan', 'Cc06_g02450' => 'ccan', 'Cc09_g09450' => 'ccan', 'CDE02G1959' => 'cde', 'CDE04G0600' => 'cde', 'CDE07G1996' => 'cde', 'CDE07G2078' => 'cde', 'CDE11G0611' => 'cde', 'Cfa001683' => 'cfa', 'Cfa001734' => 'cfa', 'Cfa001737' => 'cfa', 'Cfa003751' => 'cfa', 'Cfa012019' => 'cfa', 'Cfa017353' => 'cfa', 'Cfa017732' => 'cfa', 'Cfa022464' => 'cfa', 'Ciclev10012400m.g' => 'ccl', 'Ciclev10021242m.g' => 'ccl', 'Ciclev10021302m.g' => 'ccl', 'Ciclev10021463m.g' => 'ccl', 'Ciclev10032359m.g' => 'ccl', 'CiPaw.01G081000' => 'cil', 'CiPaw.01G262500' => 'cil', 'CiPaw.01G269800' => 'cil', 'CiPaw.02G168400' => 'cil', 'CiPaw.05G119500' => 'cil', 'CiPaw.11G147300' => 'cil', 'ClCG01G003630' => 'cla', 'ClCG05G000510' => 'cla', 'ClCG05G002300' => 'cla', 'ClCG08G007650' => 'cla', 'ClCG10G021250' => 'cla', 'COL.COLO4_06218' => 'col', 'COL.COLO4_12538' => 'col', 'COL.COLO4_14775' => 'col', 'COL.COLO4_23875' => 'col', 'Cpa.g.sc141.16' => 'cpa', 'Cpa.g.sc169.16' => 'cpa', 'Cpa.g.sc244.4' => 'cpa', 'Cpa.g.sc244.5' => 'cpa', 'Cpa.g.sc29.87' => 'cpa', 'Cpa.g.sc53.115' => 'cpa', 'Cre03.g207502' => 'cre', 'Cre06.g277000' => 'cre', 'Cre09.g394050' => 'cre', 'CsaV3_3G007680' => 'csa', 'CsaV3_3G009710' => 'csa', 'CsaV3_3G034790' => 'csa', 'CsaV3_5G003750' => 'csa', 'CsaV3_6G036620' => 'csa', 'CSS0002288' => 'camsi', 'CSS0011250' => 'camsi', 'CSS0021619' => 'camsi', 'CSS0046701' => 'camsi', 'DCAR_006420' => 'dca', 'DCAR_006865' => 'dca', 'DCAR_008558' => 'dca', 'DCAR_028754' => 'dca', 'DCAR_028755' => 'dca', 'Dinv31218' => 'din', 'Dinv32371' => 'din', 'Dinv34250' => 'din', 'Dinv37156' => 'din', 'Dinv43704' => 'din', 'Duzib093G1811' => 'dzi', 'Duzib106G1622' => 'dzi', 'Duzib114G0504' => 'dzi', 'Duzib128G0338' => 'dzi', 'Duzib128G1577' => 'dzi', 'Duzib133G0104' => 'dzi', 'Duzib133G1080' => 'dzi', 'Duzib138G0324' => 'dzi', 'Duzib138G0394' => 'dzi', 'Duzib205G0122' => 'dzi', 'Duzib268G1020' => 'dzi', 'Duzib268G1359' => 'dzi', 'ECA232G3929' => 'eca', 'ECA236G2210' => 'eca', 'ECA236G2287' => 'eca', 'ECA240G4568' => 'eca', 'ECA247G0894' => 'eca', 'EL10Ac1g00200' => 'bvu', 'EL10Ac1g00886' => 'bvu', 'EL10As1g23091' => 'bvu', 'EL10As1g23092' => 'bvu', 'Eucgr.A01284' => 'egr', 'Eucgr.A01285' => 'egr', 'Eucgr.D02456' => 'egr', 'Eucgr.E00018' => 'egr', 'Eucgr.E01439' => 'egr', 'Eucgr.G02859' => 'egr', 'FAN01G0168' => 'fan', 'FAN01G0453' => 'fan', 'FAN01G2761' => 'fan', 'FAN02G1239' => 'fan', 'FAN03G0645' => 'fan', 'FAN03G2707' => 'fan', 'FAN03G2978' => 'fan', 'FAN04G0227' => 'fan', 'FAN06G0091' => 'fan', 'FAN06G1418' => 'fan', 'FAN06G1512' => 'fan', 'FAN06G1986' => 'fan', 'FAN06G2905' => 'fan', 'FAN06G4325' => 'fan', 'FAN08G0033' => 'fan', 'FAN09G0642' => 'fan', 'FAN10G1763' => 'fan', 'FAN10G2026' => 'fan', 'FAN10G2513' => 'fan', 'FAN10G3402' => 'fan', 'FAN10G3564' => 'fan', 'FAN10G3987' => 'fan', 'FAN13G1490' => 'fan', 'FAN14G5857' => 'fan', 'FAN18G1188' => 'fan', 'FvH4_5g00750' => 'fve', 'FvH4_6g13410' => 'fve', 'FvH4_7g11740' => 'fve', 'FvH4_7g17410' => 'fve', 'FvH4_7g18860' => 'fve', 'Glyma.01G099100' => 'gma', 'Glyma.01G142300' => 'gma', 'Glyma.03G025500' => 'gma', 'Glyma.03G069700' => 'gma', 'Glyma.03G260000' => 'gma', 'Glyma.09G269800' => 'gma', 'Glyma.10G208700' => 'gma', 'Glyma.18G220400' => 'gma', 'Glyma.20G182000' => 'gma', 'Gohir.A01G221726' => 'ghi', 'Gohir.A07G134600' => 'ghi', 'Gohir.A07G146000' => 'ghi', 'Gohir.A08G173900' => 'ghi', 'Gohir.A09G194900' => 'ghi', 'Gohir.A10G204100' => 'ghi', 'Gohir.A11G080600' => 'ghi', 'Gohir.A11G327500' => 'ghi', 'Gohir.A12G101800' => 'ghi', 'Gohir.D01G211200' => 'ghi', 'Gohir.D07G139200' => 'ghi', 'Gohir.D07G152100' => 'ghi', 'Gohir.D08G192600' => 'ghi', 'Gohir.D09G189200' => 'ghi', 'Gohir.D10G212000' => 'ghi', 'Gohir.D11G085200' => 'ghi', 'Gohir.D11G346400' => 'ghi', 'Gohir.D12G104800' => 'ghi', 'Gorai.001G151300' => 'gra', 'Gorai.001G174100' => 'gra', 'Gorai.002G257000' => 'gra', 'Gorai.004G202600' => 'gra', 'Gorai.007G090900' => 'gra', 'Gorai.007G376700' => 'gra', 'Gorai.008G114100' => 'gra', 'Gorai.011G237900' => 'gra', 'GSVIVG01005450001' => 'vvi', 'GSVIVG01016232001' => 'vvi', 'GSVIVG01026157001' => 'vvi', 'GSVIVG01027419001' => 'vvi', 'GSVIVG01027631001' => 'vvi', 'GSVIVG01034143001' => 'vvi', 'HanXRQChr03g0093921' => 'han', 'HanXRQChr04g0120001' => 'han', 'HanXRQChr04g0122561' => 'han', 'HanXRQChr09g0246851' => 'han', 'HanXRQChr10g0293311' => 'han', 'HanXRQChr13g0425231' => 'han', 'HanXRQChr16g0532571' => 'han', 'Haze_09050' => 'cav', 'Haze_15715' => 'cav', 'Haze_15716' => 'cav', 'Haze_16803' => 'cav', 'Haze_16850' => 'cav', 'Hma1.2p1_0301F.1_g118655' => 'hma', 'Hma1.2p1_0309F.1_g120590' => 'hma', 'Hma1.2p1_0936F.1_g238900' => 'hma', 'Hma1.2p1_3552F.1_g336740' => 'hma', 'HPP92_003520' => 'vpl', 'HPP92_006628' => 'vpl', 'HPP92_006645' => 'vpl', 'HPP92_014669' => 'vpl', 'HPP92_015077' => 'vpl', 'Hund16742' => 'sun', 'Hund17022' => 'sun', 'Lalb_Chr02g0152131' => 'lal', 'Lalb_Chr05g0225371' => 'lal', 'Lalb_Chr07g0189841' => 'lal', 'Lalb_Chr07g0192961' => 'lal', 'Lalb_Chr12g0208221' => 'lal', 'Lalb_Chr13g0291211' => 'lal', 'Lalb_Chr13g0291781' => 'lal', 'Lalb_Chr18g0044651' => 'lal', 'Lalb_Chr21g0313731' => 'lal', 'Lj1g0022533' => 'lja', 'Lj2A18T50' => 'lonja', 'Lj2A92G93' => 'lonja', 'Lj3A965T73' => 'lonja', 'Lj3g0000673' => 'lja', 'Lj3g0002666' => 'lja', 'Lj4g0016985' => 'lja', 'Lj5g0003625' => 'lja', 'Lj7A529G36' => 'lonja', 'Lj9A569T49' => 'lonja', 'Lj9A604T63' => 'lonja', 'Lsat_1_v5_gn_3_132060' => 'lsa', 'Lsat_1_v5_gn_4_68941' => 'lsa', 'Lsat_1_v5_gn_5_95580' => 'lsa', 'Lsat_1_v5_gn_7_161' => 'lsa', 'Lsat_1_v5_gn_7_7041' => 'lsa', 'Lsat_1_v5_gn_9_33481' => 'lsa', 'Lsat_1_v5_gn_9_68260' => 'lsa', 'Manes.01G073100' => 'mes', 'Manes.01G266300' => 'mes', 'Manes.02G033300' => 'mes', 'Manes.05G017900' => 'mes', 'Manes.05G046100' => 'mes', 'Manes.08G080900' => 'mes', 'Manes.10G049400' => 'mes', 'Mapoly0009s0186' => 'mpo', 'Mapoly0036s0118' => 'mpo', 'Mapoly0101s0046' => 'mpo', 'MBI04_g30218_MAGBIO' => 'mbi', 'MBI04_g35564_MAGBIO' => 'mbi', 'MBI12_g34011_MAGBIO' => 'mbi', 'MBI14_g04655_MAGBIO' => 'mbi', 'MCO07G653' => 'mco', 'MCO10G173' => 'mco', 'MD01G1087100' => 'mdo', 'MD01G1104200' => 'mdo', 'MD02G1205100' => 'mdo', 'MD04G1079200' => 'mdo', 'MD04G1131400' => 'mdo', 'MD07G1121600' => 'mdo', 'MD07G1157300' => 'mdo', 'MD07G1171000' => 'mdo', 'MD12G1144500' => 'mdo', 'Medtr1g094610' => 'mtr', 'Medtr4g021795' => 'mtr', 'Medtr4g023760' => 'mtr', 'Medtr7g118050' => 'mtr', 'MELO3C005582.2' => 'cme', 'MELO3C005989.2' => 'cme', 'MELO3C006192.2' => 'cme', 'MELO3C009248.2' => 'cme', 'MELO3C019817.2' => 'cme', 'Migut.B01625' => 'egut', 'Migut.B01915' => 'egut', 'Migut.F01721' => 'egut', 'Migut.J00314' => 'egut', 'MSTRG.20742' => 'ama', 'MSTRG.8134' => 'ama', 'Nitab4.5_0000096g0010' => 'nta', 'Nitab4.5_0000202g0030' => 'nta', 'Nitab4.5_0000216g0370' => 'nta', 'Nitab4.5_0000457g0230' => 'nta', 'Nitab4.5_0001702g0170' => 'nta', 'Nitab4.5_0003607g0010' => 'nta', 'Nitab4.5_0004917g0020' => 'nta', 'Nitab4.5_0007059g0010' => 'nta', 'Nitab4.5_0007184g0010' => 'nta', 'Nitab4.5_0007346g0020' => 'nta', 'Nn1g00410' => 'nnu', 'Nn1g01252' => 'nnu', 'Nn2g11168' => 'nnu', 'Nn2g13403' => 'nnu', 'Nn2g13760' => 'nnu', 'Nn4g26380' => 'nnu', 'Oeu000806.2' => 'oeu', 'Oeu005788.1' => 'oeu', 'Oeu006900.3' => 'oeu', 'Oeu007797.1' => 'oeu', 'Oeu011932.1' => 'oeu', 'Oeu022739.1' => 'oeu', 'Oeu037918.1' => 'oeu', 'Oeu055490.2' => 'oeu', 'Os01g0844400' => 'osa', 'Os02g0819100' => 'osa', 'Os03g0804300' => 'osa', 'Os05g0458000' => 'osa', 'Os07g0467800' => 'osa', 'Os12g0602200' => 'osa', 'Peaxi162Scf00013g03444' => 'pax', 'Peaxi162Scf00094g01120' => 'pax', 'Peaxi162Scf00191g01211' => 'pax', 'Peaxi162Scf00238g01110' => 'pax', 'Peaxi162Scf00330g00719' => 'pax', 'Peaxi162Scf00627g00018' => 'pax', 'PGR031G2686' => 'pgr', 'PGR042G0809' => 'pgr', 'PGR142G0193' => 'pgr', 'PGSC0003DMG400011066' => 'stu', 'PGSC0003DMG400012041' => 'stu', 'PGSC0003DMG400013678' => 'stu', 'PGSC0003DMG400023477' => 'stu', 'PGSC0003DMG400025956' => 'stu', 'PGSC0003DMG401019151' => 'stu', 'Phvul.006G116400' => 'pvu', 'Phvul.007G097300' => 'pvu', 'Phvul.010G015000' => 'pvu', 'Phvul.010G083900' => 'pvu', 'Potri.001G117100' => 'ptr', 'Potri.002G147300' => 'ptr', 'Potri.003G115600' => 'ptr', 'Potri.006G087400' => 'ptr', 'Potri.010G226100' => 'ptr', 'Potri.014G069200' => 'ptr', 'Potri.014G104000' => 'ptr', 'Potri.016G100200' => 'ptr', 'Pp3c10_20450' => 'ppa', 'Pp3c1_42400' => 'ppa', 'Pp3c3_24390' => 'ppa', 'Pp3c3_2860' => 'ppa', 'PRCOL_00003193' => 'pco', 'Prupe.2G144500' => 'ppe', 'Prupe.2G195700' => 'ppe', 'Prupe.2G209800' => 'ppe', 'Prupe.5G080000' => 'ppe', 'Prupe.6G257900' => 'ppe', 'Psat3g001160' => 'psa', 'Psat6g181880' => 'psa', 'Psat7g233720' => 'psa', 'PSO063G7587' => 'pso', 'PSO339G2145' => 'pso', 'PSO339G3369' => 'pso', 'PSO478G2747' => 'pso', 'PSO513G0140' => 'pso', 'PSO782G1614' => 'pso', 'PSO782G4889' => 'pso', 'PSO782G5485' => 'pso', 'PSO801G0241' => 'pso', 'QL07p048854' => 'qlo', 'QL08p046745' => 'qlo', 'QL08p052606' => 'qlo', 'QL08p053414' => 'qlo', 'QL08p054868' => 'qlo', 'RcHm_v2.0_Chr1g0350251' => 'rch', 'RcHm_v2.0_Chr1g0360851' => 'rch', 'RcHm_v2.0_Chr1g0362791' => 'rch', 'RcHm_v2.0_Chr3g0466281' => 'rch', 'RcHm_v2.0_Chr7g0201481' => 'rch', 'Rhsim01G0148600' => 'rsi', 'Rhsim05G0194400' => 'rsi', 'Rhsim07G0000700' => 'rsi', 'Rhsim07G0000800' => 'rsi', 'Rhsim07G0027900' => 'rsi', 'Rhsim09G0149500' => 'rsi', 'RhsimUnG0186900' => 'rsi', 'Sabra01G0089900' => 'sbr', 'Sabra02G0114700' => 'sbr', 'Sabra02G0116300' => 'sbr', 'Sabra03G0080100' => 'sbr', 'Sabra08G0024300' => 'sbr', 'Sabra10G0174300' => 'sbr', 'Sabra14G0048900' => 'sbr', 'Sabra14G0076500' => 'sbr', 'SalBow5G2513' => 'sbo', 'Sc01g0002300' => 'sci', 'Sc01g0004450' => 'sci', 'Sc06g0001680' => 'sci', 'Sc23g0003580' => 'sci', 'Sed0000913' => 'sed', 'Sed0001655' => 'sed', 'Sed0007745' => 'sed', 'Sed0010951' => 'sed', 'Sed0017599' => 'sed', 'Sed0021405' => 'sed', 'Sed0022810' => 'sed', 'SEGI_07099' => 'sgi', 'SEGI_11931' => 'sgi', 'SEGI_13187' => 'sgi', 'SEGI_29958' => 'sgi', 'SEGI_36351' => 'sgi', 'SGA_v2.0_scaffold126G33770' => 'sas', 'SGA_v2.0_scaffold153G37003' => 'sas', 'SGA_v2.0_scaffold2G01359' => 'sas', 'SGA_v2.0_scaffold5G03064' => 'sas', 'SGA_v2.0_scaffold95G28903' => 'sas', 'SHI12701' => 'shi', 'SHI26410' => 'shi', 'SHI38997' => 'shi', 'SHI53759' => 'shi', 'SHI53886' => 'shi', 'SHI54714' => 'shi', 'SMO011G0041' => 'smo', 'SMO146G0251' => 'smo', 'SMO160G0004' => 'smo', 'SMO174G0057' => 'smo', 'SMO244G0089' => 'smo', 'SMO296G0011' => 'smo', 'Solyc01g091280.3' => 'sly', 'Solyc05g047610.3' => 'sly', 'Solyc05g047640.3' => 'sly', 'Solyc05g055630.3' => 'sly', 'Solyc10g018160.2' => 'sly', 'Solyc10g084820.2' => 'sly', 'Solyc10g086565.2' => 'sly', 'Sopen01g037030' => 'spe', 'Sopen05g027920' => 'spe', 'Sopen05g034070' => 'spe', 'Sopen10g007260' => 'spe', 'Sopen10g034260' => 'spe', 'Sopen10g035950' => 'spe', 'Sp3g07710' => 'spa', 'Sp4g27420' => 'spa', 'Sp5g02450' => 'spa', 'Sp6g01280' => 'spa', 'Sp6g38480' => 'spa', 'Sp7g20780' => 'spa', 'TAR374G1413' => 'tar', 'TAR623G1777' => 'tar', 'TAR629G2370' => 'tar', 'TAR633G1759' => 'tar', 'TAR636G3387' => 'tar', 'THA.LOC104802447' => 'tha', 'THA.LOC104813916' => 'tha', 'THA.LOC104816423' => 'tha', 'THA.LOC104817246' => 'tha', 'THA.LOC104825895' => 'tha', 'Thecc.01G335200' => 'tca', 'Thecc.01G377400' => 'tca', 'Thecc.03G262200' => 'tca', 'Thecc.05G036800' => 'tca', 'Thecc.10G080500' => 'tca', 'Thecc.10G080800' => 'tca', 'Thhalv10001560m.g' => 'esa', 'Thhalv10006120m.g' => 'esa', 'Thhalv10014375m.g' => 'esa', 'Thhalv10021264m.g' => 'esa', 'Thhalv10028856m.g' => 'esa', 'TPR.G1914' => 'tpr', 'TPR.G4757' => 'tpr', 'TPR.G5595' => 'tpr', 'TWI14G0952' => 'twi', 'TWI14G1307' => 'twi', 'TWI38G2143' => 'twi', 'TWI59G0826' => 'twi', 'TWI77G0527' => 'twi', 'TWI81G0150' => 'twi', 'unitig_21.g21018' => 'ugi', 'unitig_26.g9725' => 'ugi', 'unitig_744.g24653' => 'ugi', 'unitig_749.g13778' => 'ugi', 'unitig_899.g15035' => 'ugi', 'vmacro04296' => 'vma', 'vmacro04852' => 'vma', 'vmacro13404' => 'vma', 'vmacro20169' => 'vma', 'vmacro21014' => 'vma', 'VMungo0331G0237' => 'vmu', 'VMungo0331G0706' => 'vmu', 'VMungo0331G1361' => 'vmu', 'VMungo0331G1489' => 'vmu', 'VMungo0540G1037' => 'vmu', 'VMungo0720G2487' => 'vmu', 'VMungo0720G2721' => 'vmu', 'Zm00001eb086860' => 'zma', 'Zm00001eb104760' => 'zma', 'Zm00001eb148220' => 'zma', 'Zm00001eb259030' => 'zma', 'Zm00001eb289590' => 'zma', 'Zm00001eb420150' => 'zma' ), 'gf_id' => 'HOM05D000968', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000968' ), 'data_identifier' => 'HOM05D000968', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000968', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p31690' => 'bna', 'A03p36040' => 'bna', 'A03p53730' => 'bna', 'A04p01410' => 'bna', 'A05p05420' => 'bna', 'A05p39630' => 'bna', 'A05p39640' => 'bna', 'A09p00970' => 'bna', 'A09p53060' => 'bna', 'A10p31890' => 'bna', 'Aa31LG10G15040' => 'aar', 'Aa31LG1G21090' => 'aar', 'Aa31LG1G26900' => 'aar', 'Aa31LG3G1820' => 'aar', 'Aa31LG5G1100' => 'aar', 'Aa31LG6G4740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2265' => 'aag', 'Actinidia07998' => 'ach', 'Actinidia11266' => 'ach', 'Actinidia12682' => 'ach', 'Actinidia26479' => 'ach', 'Actinidia31406' => 'ach', 'Actinidia32437' => 'ach', 'Actinidia38862' => 'ach', 'Ah.05g174230' => 'amhyb', 'Ah.05g179070' => 'amhyb', 'Ah.05g179090' => 'amhyb', 'Ah.12g059950' => 'amhyb', 'AL3G20480' => 'aly', 'AL4G44520' => 'aly', 'AL5G43110' => 'aly', 'AL6G13890' => 'aly', 'AL6G52620' => 'aly', 'AL7G30830' => 'aly', 'Aqoxy1G00899' => 'aox', 'Aqoxy5G04333' => 'aox', 'Aqoxy7G00641' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3IZ0NN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4EF6AW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W9P8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79GA3M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C43NQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFCU6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G95YVJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCHK29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LU1UG8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX91RN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGB4B1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8DA0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9H7JI' => 'arhy', 'AT3G09320' => 'ath', 'AT3G60800' => 'ath', 'AT4G00840' => 'ath', 'AT4G22750' => 'ath', 'AT5G04270' => 'ath', 'ATR0090G003' => 'atr', 'ATR0559G349' => 'atr', 'ATR0680G261' => 'atr', 'ATR0810G048' => 'atr', 'Atru.chr12.831' => 'acertr', 'Atru.chr5.303' => 'acertr', 'Atru.chr5.748' => 'acertr', 'Atru.chr8.1999' => 'acertr', 'Atru.chr9.1436' => 'acertr', 'AUR62004211' => 'cqu', 'AUR62004548' => 'cqu', 'AUR62013637' => 'cqu', 'AUR62022662' => 'cqu', 'AUR62025777' => 'cqu', 'AUR62042386' => 'cqu', 'BcaB01g02310' => 'bca', 'BcaB01g06062' => 'bca', 'BcaB02g08975' => 'bca', 'BcaB02g08980' => 'bca', 'BcaC01g04228' => 'bca', 'BcaC01g06830' => 'bca', 'BcaC02g10186' => 'bca', 'BcaC02g12214' => 'bca', 'BcaC04g24101' => 'bca', 'BcaC05g29520' => 'bca', 'BcaC05g29661' => 'bca', 'BcaC06g32130' => 'bca', 'BcaC06g32131' => 'bca', 'BcaC07g40601' => 'bca', 'BcaC07g42641' => 'bca', 'BcaNung01038' => 'bca', 'BcaNung01676' => 'bca', 'BcaNung02480' => 'bca', 'BcaNung07376' => 'bca', 'BolC3t16146H' => 'bol', 'BolC3t16637H' => 'bol', 'BolC4t22257H' => 'bol', 'BolC4t24728H' => 'bol', 'BolC5t34517H' => 'bol', 'BolC7t45703H' => 'bol', 'BolC8t51166H' => 'bol', 'BolC9t53038H' => 'bol', 'BolC9t60000H' => 'bol', 'BraA01t01345Z' => 'bra', 'BraA01t01346Z' => 'bra', 'BraA01t01348Z' => 'bra', 'BraA03t12347Z' => 'bra', 'BraA03t12775Z' => 'bra', 'BraA03t14439Z' => 'bra', 'BraA04t15860Z' => 'bra', 'BraA05t19511Z' => 'bra', 'BraA05t22746Z' => 'bra', 'BraA09t35767Z' => 'bra', 'BraA09t40732Z' => 'bra', 'BraA10t45233Z' => 'bra', 'C03p38720' => 'bna', 'C03p43680' => 'bna', 'C04p06350' => 'bna', 'C04p31800' => 'bna', 'C05p58680' => 'bna', 'C07p52110' => 'bna', 'C08p35760' => 'bna', 'C09p01050' => 'bna', 'C09p72600' => 'bna', 'CAN.G106.2' => 'can', 'CAN.G1482.1' => 'can', 'CAN.G324.12' => 'can', 'CAN.G388.20' => 'can', 'CAN.G412.7' => 'can', 'CAN.G694.32' => 'can', 'CAN.G92.12' => 'can', 'CANSAT11G2353' => 'cansat', 'CANSAT21G1398' => 'cansat', 'CANSAT56G2456' => 'cansat', 'CANSAT56G3031' => 'cansat', 'CANSAT56G4539' => 'cansat', 'CARHR083680' => 'chi', 'CARHR171190' => 'chi', 'CARHR209010' => 'chi', 'CARHR229680' => 'chi', 'CARHR249490' => 'chi', 'Carub.0003s0844' => 'cru', 'Carub.0005s2755' => 'cru', 'Carub.0006s0322' => 'cru', 'Carub.0006s3586' => 'cru', 'Carub.0007s1855' => 'cru', 'Ca_07808_v3' => 'car', 'Ca_09535_v3' => 'car', 'Ca_10548_v3' => 'car', 'Ca_19913_v3' => 'car', 'Ca_19916_v3' => 'car', 'Ca_19975_v3' => 'car', 'CBR_g22876' => 'cbr', 'CBR_g22879' => 'cbr', 'CBR_g38491' => 'cbr', 'CBR_g54185' => 'cbr', 'CBR_g54190' => 'cbr', 'Cc02_g11020' => 'ccan', 'Cc02_g23920' => 'ccan', 'Cc02_g39860' => 'ccan', 'Cc02_g39870' => 'ccan', 'Cc03_g06760' => 'ccan', 'Cc06_g02450' => 'ccan', 'Cc09_g09450' => 'ccan', 'CDE02G1959' => 'cde', 'CDE04G0600' => 'cde', 'CDE07G1996' => 'cde', 'CDE07G2078' => 'cde', 'CDE11G0611' => 'cde', 'Cfa001683' => 'cfa', 'Cfa001734' => 'cfa', 'Cfa001737' => 'cfa', 'Cfa003751' => 'cfa', 'Cfa012019' => 'cfa', 'Cfa017353' => 'cfa', 'Cfa017732' => 'cfa', 'Cfa022464' => 'cfa', 'Ciclev10012400m.g' => 'ccl', 'Ciclev10021242m.g' => 'ccl', 'Ciclev10021302m.g' => 'ccl', 'Ciclev10021463m.g' => 'ccl', 'Ciclev10032359m.g' => 'ccl', 'CiPaw.01G081000' => 'cil', 'CiPaw.01G262500' => 'cil', 'CiPaw.01G269800' => 'cil', 'CiPaw.02G168400' => 'cil', 'CiPaw.05G119500' => 'cil', 'CiPaw.11G147300' => 'cil', 'ClCG01G003630' => 'cla', 'ClCG05G000510' => 'cla', 'ClCG05G002300' => 'cla', 'ClCG08G007650' => 'cla', 'ClCG10G021250' => 'cla', 'COL.COLO4_06218' => 'col', 'COL.COLO4_12538' => 'col', 'COL.COLO4_14775' => 'col', 'COL.COLO4_23875' => 'col', 'Cpa.g.sc141.16' => 'cpa', 'Cpa.g.sc169.16' => 'cpa', 'Cpa.g.sc244.4' => 'cpa', 'Cpa.g.sc244.5' => 'cpa', 'Cpa.g.sc29.87' => 'cpa', 'Cpa.g.sc53.115' => 'cpa', 'Cre03.g207502' => 'cre', 'Cre06.g277000' => 'cre', 'Cre09.g394050' => 'cre', 'CsaV3_3G007680' => 'csa', 'CsaV3_3G009710' => 'csa', 'CsaV3_3G034790' => 'csa', 'CsaV3_5G003750' => 'csa', 'CsaV3_6G036620' => 'csa', 'CSS0002288' => 'camsi', 'CSS0011250' => 'camsi', 'CSS0021619' => 'camsi', 'CSS0046701' => 'camsi', 'DCAR_006420' => 'dca', 'DCAR_006865' => 'dca', 'DCAR_008558' => 'dca', 'DCAR_028754' => 'dca', 'DCAR_028755' => 'dca', 'Dinv31218' => 'din', 'Dinv32371' => 'din', 'Dinv34250' => 'din', 'Dinv37156' => 'din', 'Dinv43704' => 'din', 'Duzib093G1811' => 'dzi', 'Duzib106G1622' => 'dzi', 'Duzib114G0504' => 'dzi', 'Duzib128G0338' => 'dzi', 'Duzib128G1577' => 'dzi', 'Duzib133G0104' => 'dzi', 'Duzib133G1080' => 'dzi', 'Duzib138G0324' => 'dzi', 'Duzib138G0394' => 'dzi', 'Duzib205G0122' => 'dzi', 'Duzib268G1020' => 'dzi', 'Duzib268G1359' => 'dzi', 'ECA232G3929' => 'eca', 'ECA236G2210' => 'eca', 'ECA236G2287' => 'eca', 'ECA240G4568' => 'eca', 'ECA247G0894' => 'eca', 'EL10Ac1g00200' => 'bvu', 'EL10Ac1g00886' => 'bvu', 'EL10As1g23091' => 'bvu', 'EL10As1g23092' => 'bvu', 'Eucgr.A01284' => 'egr', 'Eucgr.A01285' => 'egr', 'Eucgr.D02456' => 'egr', 'Eucgr.E00018' => 'egr', 'Eucgr.E01439' => 'egr', 'Eucgr.G02859' => 'egr', 'FAN01G0168' => 'fan', 'FAN01G0453' => 'fan', 'FAN01G2761' => 'fan', 'FAN02G1239' => 'fan', 'FAN03G0645' => 'fan', 'FAN03G2707' => 'fan', 'FAN03G2978' => 'fan', 'FAN04G0227' => 'fan', 'FAN06G0091' => 'fan', 'FAN06G1418' => 'fan', 'FAN06G1512' => 'fan', 'FAN06G1986' => 'fan', 'FAN06G2905' => 'fan', 'FAN06G4325' => 'fan', 'FAN08G0033' => 'fan', 'FAN09G0642' => 'fan', 'FAN10G1763' => 'fan', 'FAN10G2026' => 'fan', 'FAN10G2513' => 'fan', 'FAN10G3402' => 'fan', 'FAN10G3564' => 'fan', 'FAN10G3987' => 'fan', 'FAN13G1490' => 'fan', 'FAN14G5857' => 'fan', 'FAN18G1188' => 'fan', 'FvH4_5g00750' => 'fve', 'FvH4_6g13410' => 'fve', 'FvH4_7g11740' => 'fve', 'FvH4_7g17410' => 'fve', 'FvH4_7g18860' => 'fve', 'Glyma.01G099100' => 'gma', 'Glyma.01G142300' => 'gma', 'Glyma.03G025500' => 'gma', 'Glyma.03G069700' => 'gma', 'Glyma.03G260000' => 'gma', 'Glyma.09G269800' => 'gma', 'Glyma.10G208700' => 'gma', 'Glyma.18G220400' => 'gma', 'Glyma.20G182000' => 'gma', 'Gohir.A01G221726' => 'ghi', 'Gohir.A07G134600' => 'ghi', 'Gohir.A07G146000' => 'ghi', 'Gohir.A08G173900' => 'ghi', 'Gohir.A09G194900' => 'ghi', 'Gohir.A10G204100' => 'ghi', 'Gohir.A11G080600' => 'ghi', 'Gohir.A11G327500' => 'ghi', 'Gohir.A12G101800' => 'ghi', 'Gohir.D01G211200' => 'ghi', 'Gohir.D07G139200' => 'ghi', 'Gohir.D07G152100' => 'ghi', 'Gohir.D08G192600' => 'ghi', 'Gohir.D09G189200' => 'ghi', 'Gohir.D10G212000' => 'ghi', 'Gohir.D11G085200' => 'ghi', 'Gohir.D11G346400' => 'ghi', 'Gohir.D12G104800' => 'ghi', 'Gorai.001G151300' => 'gra', 'Gorai.001G174100' => 'gra', 'Gorai.002G257000' => 'gra', 'Gorai.004G202600' => 'gra', 'Gorai.007G090900' => 'gra', 'Gorai.007G376700' => 'gra', 'Gorai.008G114100' => 'gra', 'Gorai.011G237900' => 'gra', 'GSVIVG01005450001' => 'vvi', 'GSVIVG01016232001' => 'vvi', 'GSVIVG01026157001' => 'vvi', 'GSVIVG01027419001' => 'vvi', 'GSVIVG01027631001' => 'vvi', 'GSVIVG01034143001' => 'vvi', 'HanXRQChr03g0093921' => 'han', 'HanXRQChr04g0120001' => 'han', 'HanXRQChr04g0122561' => 'han', 'HanXRQChr09g0246851' => 'han', 'HanXRQChr10g0293311' => 'han', 'HanXRQChr13g0425231' => 'han', 'HanXRQChr16g0532571' => 'han', 'Haze_09050' => 'cav', 'Haze_15715' => 'cav', 'Haze_15716' => 'cav', 'Haze_16803' => 'cav', 'Haze_16850' => 'cav', 'Hma1.2p1_0301F.1_g118655' => 'hma', 'Hma1.2p1_0309F.1_g120590' => 'hma', 'Hma1.2p1_0936F.1_g238900' => 'hma', 'Hma1.2p1_3552F.1_g336740' => 'hma', 'HPP92_003520' => 'vpl', 'HPP92_006628' => 'vpl', 'HPP92_006645' => 'vpl', 'HPP92_014669' => 'vpl', 'HPP92_015077' => 'vpl', 'Hund16742' => 'sun', 'Hund17022' => 'sun', 'Lalb_Chr02g0152131' => 'lal', 'Lalb_Chr05g0225371' => 'lal', 'Lalb_Chr07g0189841' => 'lal', 'Lalb_Chr07g0192961' => 'lal', 'Lalb_Chr12g0208221' => 'lal', 'Lalb_Chr13g0291211' => 'lal', 'Lalb_Chr13g0291781' => 'lal', 'Lalb_Chr18g0044651' => 'lal', 'Lalb_Chr21g0313731' => 'lal', 'Lj1g0022533' => 'lja', 'Lj2A18T50' => 'lonja', 'Lj2A92G93' => 'lonja', 'Lj3A965T73' => 'lonja', 'Lj3g0000673' => 'lja', 'Lj3g0002666' => 'lja', 'Lj4g0016985' => 'lja', 'Lj5g0003625' => 'lja', 'Lj7A529G36' => 'lonja', 'Lj9A569T49' => 'lonja', 'Lj9A604T63' => 'lonja', 'Lsat_1_v5_gn_3_132060' => 'lsa', 'Lsat_1_v5_gn_4_68941' => 'lsa', 'Lsat_1_v5_gn_5_95580' => 'lsa', 'Lsat_1_v5_gn_7_161' => 'lsa', 'Lsat_1_v5_gn_7_7041' => 'lsa', 'Lsat_1_v5_gn_9_33481' => 'lsa', 'Lsat_1_v5_gn_9_68260' => 'lsa', 'Manes.01G073100' => 'mes', 'Manes.01G266300' => 'mes', 'Manes.02G033300' => 'mes', 'Manes.05G017900' => 'mes', 'Manes.05G046100' => 'mes', 'Manes.08G080900' => 'mes', 'Manes.10G049400' => 'mes', 'Mapoly0009s0186' => 'mpo', 'Mapoly0036s0118' => 'mpo', 'Mapoly0101s0046' => 'mpo', 'MBI04_g30218_MAGBIO' => 'mbi', 'MBI04_g35564_MAGBIO' => 'mbi', 'MBI12_g34011_MAGBIO' => 'mbi', 'MBI14_g04655_MAGBIO' => 'mbi', 'MCO07G653' => 'mco', 'MCO10G173' => 'mco', 'MD01G1087100' => 'mdo', 'MD01G1104200' => 'mdo', 'MD02G1205100' => 'mdo', 'MD04G1079200' => 'mdo', 'MD04G1131400' => 'mdo', 'MD07G1121600' => 'mdo', 'MD07G1157300' => 'mdo', 'MD07G1171000' => 'mdo', 'MD12G1144500' => 'mdo', 'Medtr1g094610' => 'mtr', 'Medtr4g021795' => 'mtr', 'Medtr4g023760' => 'mtr', 'Medtr7g118050' => 'mtr', 'MELO3C005582.2' => 'cme', 'MELO3C005989.2' => 'cme', 'MELO3C006192.2' => 'cme', 'MELO3C009248.2' => 'cme', 'MELO3C019817.2' => 'cme', 'Migut.B01625' => 'egut', 'Migut.B01915' => 'egut', 'Migut.F01721' => 'egut', 'Migut.J00314' => 'egut', 'MSTRG.20742' => 'ama', 'MSTRG.8134' => 'ama', 'Nitab4.5_0000096g0010' => 'nta', 'Nitab4.5_0000202g0030' => 'nta', 'Nitab4.5_0000216g0370' => 'nta', 'Nitab4.5_0000457g0230' => 'nta', 'Nitab4.5_0001702g0170' => 'nta', 'Nitab4.5_0003607g0010' => 'nta', 'Nitab4.5_0004917g0020' => 'nta', 'Nitab4.5_0007059g0010' => 'nta', 'Nitab4.5_0007184g0010' => 'nta', 'Nitab4.5_0007346g0020' => 'nta', 'Nn1g00410' => 'nnu', 'Nn1g01252' => 'nnu', 'Nn2g11168' => 'nnu', 'Nn2g13403' => 'nnu', 'Nn2g13760' => 'nnu', 'Nn4g26380' => 'nnu', 'Oeu000806.2' => 'oeu', 'Oeu005788.1' => 'oeu', 'Oeu006900.3' => 'oeu', 'Oeu007797.1' => 'oeu', 'Oeu011932.1' => 'oeu', 'Oeu022739.1' => 'oeu', 'Oeu037918.1' => 'oeu', 'Oeu055490.2' => 'oeu', 'Os01g0844400' => 'osa', 'Os02g0819100' => 'osa', 'Os03g0804300' => 'osa', 'Os05g0458000' => 'osa', 'Os07g0467800' => 'osa', 'Os12g0602200' => 'osa', 'Peaxi162Scf00013g03444' => 'pax', 'Peaxi162Scf00094g01120' => 'pax', 'Peaxi162Scf00191g01211' => 'pax', 'Peaxi162Scf00238g01110' => 'pax', 'Peaxi162Scf00330g00719' => 'pax', 'Peaxi162Scf00627g00018' => 'pax', 'PGR031G2686' => 'pgr', 'PGR042G0809' => 'pgr', 'PGR142G0193' => 'pgr', 'PGSC0003DMG400011066' => 'stu', 'PGSC0003DMG400012041' => 'stu', 'PGSC0003DMG400013678' => 'stu', 'PGSC0003DMG400023477' => 'stu', 'PGSC0003DMG400025956' => 'stu', 'PGSC0003DMG401019151' => 'stu', 'Phvul.006G116400' => 'pvu', 'Phvul.007G097300' => 'pvu', 'Phvul.010G015000' => 'pvu', 'Phvul.010G083900' => 'pvu', 'Potri.001G117100' => 'ptr', 'Potri.002G147300' => 'ptr', 'Potri.003G115600' => 'ptr', 'Potri.006G087400' => 'ptr', 'Potri.010G226100' => 'ptr', 'Potri.014G069200' => 'ptr', 'Potri.014G104000' => 'ptr', 'Potri.016G100200' => 'ptr', 'Pp3c10_20450' => 'ppa', 'Pp3c1_42400' => 'ppa', 'Pp3c3_24390' => 'ppa', 'Pp3c3_2860' => 'ppa', 'PRCOL_00003193' => 'pco', 'Prupe.2G144500' => 'ppe', 'Prupe.2G195700' => 'ppe', 'Prupe.2G209800' => 'ppe', 'Prupe.5G080000' => 'ppe', 'Prupe.6G257900' => 'ppe', 'Psat3g001160' => 'psa', 'Psat6g181880' => 'psa', 'Psat7g233720' => 'psa', 'PSO063G7587' => 'pso', 'PSO339G2145' => 'pso', 'PSO339G3369' => 'pso', 'PSO478G2747' => 'pso', 'PSO513G0140' => 'pso', 'PSO782G1614' => 'pso', 'PSO782G4889' => 'pso', 'PSO782G5485' => 'pso', 'PSO801G0241' => 'pso', 'QL07p048854' => 'qlo', 'QL08p046745' => 'qlo', 'QL08p052606' => 'qlo', 'QL08p053414' => 'qlo', 'QL08p054868' => 'qlo', 'RcHm_v2.0_Chr1g0350251' => 'rch', 'RcHm_v2.0_Chr1g0360851' => 'rch', 'RcHm_v2.0_Chr1g0362791' => 'rch', 'RcHm_v2.0_Chr3g0466281' => 'rch', 'RcHm_v2.0_Chr7g0201481' => 'rch', 'Rhsim01G0148600' => 'rsi', 'Rhsim05G0194400' => 'rsi', 'Rhsim07G0000700' => 'rsi', 'Rhsim07G0000800' => 'rsi', 'Rhsim07G0027900' => 'rsi', 'Rhsim09G0149500' => 'rsi', 'RhsimUnG0186900' => 'rsi', 'Sabra01G0089900' => 'sbr', 'Sabra02G0114700' => 'sbr', 'Sabra02G0116300' => 'sbr', 'Sabra03G0080100' => 'sbr', 'Sabra08G0024300' => 'sbr', 'Sabra10G0174300' => 'sbr', 'Sabra14G0048900' => 'sbr', 'Sabra14G0076500' => 'sbr', 'SalBow5G2513' => 'sbo', 'Sc01g0002300' => 'sci', 'Sc01g0004450' => 'sci', 'Sc06g0001680' => 'sci', 'Sc23g0003580' => 'sci', 'Sed0000913' => 'sed', 'Sed0001655' => 'sed', 'Sed0007745' => 'sed', 'Sed0010951' => 'sed', 'Sed0017599' => 'sed', 'Sed0021405' => 'sed', 'Sed0022810' => 'sed', 'SEGI_07099' => 'sgi', 'SEGI_11931' => 'sgi', 'SEGI_13187' => 'sgi', 'SEGI_29958' => 'sgi', 'SEGI_36351' => 'sgi', 'SGA_v2.0_scaffold126G33770' => 'sas', 'SGA_v2.0_scaffold153G37003' => 'sas', 'SGA_v2.0_scaffold2G01359' => 'sas', 'SGA_v2.0_scaffold5G03064' => 'sas', 'SGA_v2.0_scaffold95G28903' => 'sas', 'SHI12701' => 'shi', 'SHI26410' => 'shi', 'SHI38997' => 'shi', 'SHI53759' => 'shi', 'SHI53886' => 'shi', 'SHI54714' => 'shi', 'SMO011G0041' => 'smo', 'SMO146G0251' => 'smo', 'SMO160G0004' => 'smo', 'SMO174G0057' => 'smo', 'SMO244G0089' => 'smo', 'SMO296G0011' => 'smo', 'Solyc01g091280.3' => 'sly', 'Solyc05g047610.3' => 'sly', 'Solyc05g047640.3' => 'sly', 'Solyc05g055630.3' => 'sly', 'Solyc10g018160.2' => 'sly', 'Solyc10g084820.2' => 'sly', 'Solyc10g086565.2' => 'sly', 'Sopen01g037030' => 'spe', 'Sopen05g027920' => 'spe', 'Sopen05g034070' => 'spe', 'Sopen10g007260' => 'spe', 'Sopen10g034260' => 'spe', 'Sopen10g035950' => 'spe', 'Sp3g07710' => 'spa', 'Sp4g27420' => 'spa', 'Sp5g02450' => 'spa', 'Sp6g01280' => 'spa', 'Sp6g38480' => 'spa', 'Sp7g20780' => 'spa', 'TAR374G1413' => 'tar', 'TAR623G1777' => 'tar', 'TAR629G2370' => 'tar', 'TAR633G1759' => 'tar', 'TAR636G3387' => 'tar', 'THA.LOC104802447' => 'tha', 'THA.LOC104813916' => 'tha', 'THA.LOC104816423' => 'tha', 'THA.LOC104817246' => 'tha', 'THA.LOC104825895' => 'tha', 'Thecc.01G335200' => 'tca', 'Thecc.01G377400' => 'tca', 'Thecc.03G262200' => 'tca', 'Thecc.05G036800' => 'tca', 'Thecc.10G080500' => 'tca', 'Thecc.10G080800' => 'tca', 'Thhalv10001560m.g' => 'esa', 'Thhalv10006120m.g' => 'esa', 'Thhalv10014375m.g' => 'esa', 'Thhalv10021264m.g' => 'esa', 'Thhalv10028856m.g' => 'esa', 'TPR.G1914' => 'tpr', 'TPR.G4757' => 'tpr', 'TPR.G5595' => 'tpr', 'TWI14G0952' => 'twi', 'TWI14G1307' => 'twi', 'TWI38G2143' => 'twi', 'TWI59G0826' => 'twi', 'TWI77G0527' => 'twi', 'TWI81G0150' => 'twi', 'unitig_21.g21018' => 'ugi', 'unitig_26.g9725' => 'ugi', 'unitig_744.g24653' => 'ugi', 'unitig_749.g13778' => 'ugi', 'unitig_899.g15035' => 'ugi', 'vmacro04296' => 'vma', 'vmacro04852' => 'vma', 'vmacro13404' => 'vma', 'vmacro20169' => 'vma', 'vmacro21014' => 'vma', 'VMungo0331G0237' => 'vmu', 'VMungo0331G0706' => 'vmu', 'VMungo0331G1361' => 'vmu', 'VMungo0331G1489' => 'vmu', 'VMungo0540G1037' => 'vmu', 'VMungo0720G2487' => 'vmu', 'VMungo0720G2721' => 'vmu', 'Zm00001eb086860' => 'zma', 'Zm00001eb104760' => 'zma', 'Zm00001eb148220' => 'zma', 'Zm00001eb259030' => 'zma', 'Zm00001eb289590' => 'zma', 'Zm00001eb420150' => 'zma' ) $gf_id = 'HOM05D000968' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000968' ) $data_identifier = 'HOM05D000968' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 19, 'bol' => (int) 9, 'bra' => (int) 12, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 5, 'ccan' => (int) 7, 'cde' => (int) 5, 'cfa' => (int) 8, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 4, 'dca' => (int) 5, 'din' => (int) 5, 'dzi' => (int) 12, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 25, 'fve' => (int) 5, 'gma' => (int) 9, 'ghi' => (int) 18, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 7, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 5, 'sun' => (int) 2, 'lal' => (int) 9, 'lja' => (int) 5, 'lonja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 9, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 2, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 3, 'stu' => (int) 6, 'pvu' => (int) 4, 'ptr' => (int) 8, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 3, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 1, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 5, 'sas' => (int) 5, 'shi' => (int) 6, 'smo' => (int) 6, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 3, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420150' $species_info = array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ) $local_species = 'mes' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000968', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p31690' => 'bna', 'A03p36040' => 'bna', 'A03p53730' => 'bna', 'A04p01410' => 'bna', 'A05p05420' => 'bna', 'A05p39630' => 'bna', 'A05p39640' => 'bna', 'A09p00970' => 'bna', 'A09p53060' => 'bna', 'A10p31890' => 'bna', 'Aa31LG10G15040' => 'aar', 'Aa31LG1G21090' => 'aar', 'Aa31LG1G26900' => 'aar', 'Aa31LG3G1820' => 'aar', 'Aa31LG5G1100' => 'aar', 'Aa31LG6G4740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2265' => 'aag', 'Actinidia07998' => 'ach', 'Actinidia11266' => 'ach', 'Actinidia12682' => 'ach', 'Actinidia26479' => 'ach', 'Actinidia31406' => 'ach', 'Actinidia32437' => 'ach', 'Actinidia38862' => 'ach', 'Ah.05g174230' => 'amhyb', 'Ah.05g179070' => 'amhyb', 'Ah.05g179090' => 'amhyb', 'Ah.12g059950' => 'amhyb', 'AL3G20480' => 'aly', 'AL4G44520' => 'aly', 'AL5G43110' => 'aly', 'AL6G13890' => 'aly', 'AL6G52620' => 'aly', 'AL7G30830' => 'aly', 'Aqoxy1G00899' => 'aox', 'Aqoxy5G04333' => 'aox', 'Aqoxy7G00641' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3IZ0NN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4EF6AW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W9P8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79GA3M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C43NQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFCU6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G95YVJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCHK29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LU1UG8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX91RN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGB4B1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8DA0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9H7JI' => 'arhy', 'AT3G09320' => 'ath', 'AT3G60800' => 'ath', 'AT4G00840' => 'ath', 'AT4G22750' => 'ath', 'AT5G04270' => 'ath', 'ATR0090G003' => 'atr', 'ATR0559G349' => 'atr', 'ATR0680G261' => 'atr', 'ATR0810G048' => 'atr', 'Atru.chr12.831' => 'acertr', 'Atru.chr5.303' => 'acertr', 'Atru.chr5.748' => 'acertr', 'Atru.chr8.1999' => 'acertr', 'Atru.chr9.1436' => 'acertr', 'AUR62004211' => 'cqu', 'AUR62004548' => 'cqu', 'AUR62013637' => 'cqu', 'AUR62022662' => 'cqu', 'AUR62025777' => 'cqu', 'AUR62042386' => 'cqu', 'BcaB01g02310' => 'bca', 'BcaB01g06062' => 'bca', 'BcaB02g08975' => 'bca', 'BcaB02g08980' => 'bca', 'BcaC01g04228' => 'bca', 'BcaC01g06830' => 'bca', 'BcaC02g10186' => 'bca', 'BcaC02g12214' => 'bca', 'BcaC04g24101' => 'bca', 'BcaC05g29520' => 'bca', 'BcaC05g29661' => 'bca', 'BcaC06g32130' => 'bca', 'BcaC06g32131' => 'bca', 'BcaC07g40601' => 'bca', 'BcaC07g42641' => 'bca', 'BcaNung01038' => 'bca', 'BcaNung01676' => 'bca', 'BcaNung02480' => 'bca', 'BcaNung07376' => 'bca', 'BolC3t16146H' => 'bol', 'BolC3t16637H' => 'bol', 'BolC4t22257H' => 'bol', 'BolC4t24728H' => 'bol', 'BolC5t34517H' => 'bol', 'BolC7t45703H' => 'bol', 'BolC8t51166H' => 'bol', 'BolC9t53038H' => 'bol', 'BolC9t60000H' => 'bol', 'BraA01t01345Z' => 'bra', 'BraA01t01346Z' => 'bra', 'BraA01t01348Z' => 'bra', 'BraA03t12347Z' => 'bra', 'BraA03t12775Z' => 'bra', 'BraA03t14439Z' => 'bra', 'BraA04t15860Z' => 'bra', 'BraA05t19511Z' => 'bra', 'BraA05t22746Z' => 'bra', 'BraA09t35767Z' => 'bra', 'BraA09t40732Z' => 'bra', 'BraA10t45233Z' => 'bra', 'C03p38720' => 'bna', 'C03p43680' => 'bna', 'C04p06350' => 'bna', 'C04p31800' => 'bna', 'C05p58680' => 'bna', 'C07p52110' => 'bna', 'C08p35760' => 'bna', 'C09p01050' => 'bna', 'C09p72600' => 'bna', 'CAN.G106.2' => 'can', 'CAN.G1482.1' => 'can', 'CAN.G324.12' => 'can', 'CAN.G388.20' => 'can', 'CAN.G412.7' => 'can', 'CAN.G694.32' => 'can', 'CAN.G92.12' => 'can', 'CANSAT11G2353' => 'cansat', 'CANSAT21G1398' => 'cansat', 'CANSAT56G2456' => 'cansat', 'CANSAT56G3031' => 'cansat', 'CANSAT56G4539' => 'cansat', 'CARHR083680' => 'chi', 'CARHR171190' => 'chi', 'CARHR209010' => 'chi', 'CARHR229680' => 'chi', 'CARHR249490' => 'chi', 'Carub.0003s0844' => 'cru', 'Carub.0005s2755' => 'cru', 'Carub.0006s0322' => 'cru', 'Carub.0006s3586' => 'cru', 'Carub.0007s1855' => 'cru', 'Ca_07808_v3' => 'car', 'Ca_09535_v3' => 'car', 'Ca_10548_v3' => 'car', 'Ca_19913_v3' => 'car', 'Ca_19916_v3' => 'car', 'Ca_19975_v3' => 'car', 'CBR_g22876' => 'cbr', 'CBR_g22879' => 'cbr', 'CBR_g38491' => 'cbr', 'CBR_g54185' => 'cbr', 'CBR_g54190' => 'cbr', 'Cc02_g11020' => 'ccan', 'Cc02_g23920' => 'ccan', 'Cc02_g39860' => 'ccan', 'Cc02_g39870' => 'ccan', 'Cc03_g06760' => 'ccan', 'Cc06_g02450' => 'ccan', 'Cc09_g09450' => 'ccan', 'CDE02G1959' => 'cde', 'CDE04G0600' => 'cde', 'CDE07G1996' => 'cde', 'CDE07G2078' => 'cde', 'CDE11G0611' => 'cde', 'Cfa001683' => 'cfa', 'Cfa001734' => 'cfa', 'Cfa001737' => 'cfa', 'Cfa003751' => 'cfa', 'Cfa012019' => 'cfa', 'Cfa017353' => 'cfa', 'Cfa017732' => 'cfa', 'Cfa022464' => 'cfa', 'Ciclev10012400m.g' => 'ccl', 'Ciclev10021242m.g' => 'ccl', 'Ciclev10021302m.g' => 'ccl', 'Ciclev10021463m.g' => 'ccl', 'Ciclev10032359m.g' => 'ccl', 'CiPaw.01G081000' => 'cil', 'CiPaw.01G262500' => 'cil', 'CiPaw.01G269800' => 'cil', 'CiPaw.02G168400' => 'cil', 'CiPaw.05G119500' => 'cil', 'CiPaw.11G147300' => 'cil', 'ClCG01G003630' => 'cla', 'ClCG05G000510' => 'cla', 'ClCG05G002300' => 'cla', 'ClCG08G007650' => 'cla', 'ClCG10G021250' => 'cla', 'COL.COLO4_06218' => 'col', 'COL.COLO4_12538' => 'col', 'COL.COLO4_14775' => 'col', 'COL.COLO4_23875' => 'col', 'Cpa.g.sc141.16' => 'cpa', 'Cpa.g.sc169.16' => 'cpa', 'Cpa.g.sc244.4' => 'cpa', 'Cpa.g.sc244.5' => 'cpa', 'Cpa.g.sc29.87' => 'cpa', 'Cpa.g.sc53.115' => 'cpa', 'Cre03.g207502' => 'cre', 'Cre06.g277000' => 'cre', 'Cre09.g394050' => 'cre', 'CsaV3_3G007680' => 'csa', 'CsaV3_3G009710' => 'csa', 'CsaV3_3G034790' => 'csa', 'CsaV3_5G003750' => 'csa', 'CsaV3_6G036620' => 'csa', 'CSS0002288' => 'camsi', 'CSS0011250' => 'camsi', 'CSS0021619' => 'camsi', 'CSS0046701' => 'camsi', 'DCAR_006420' => 'dca', 'DCAR_006865' => 'dca', 'DCAR_008558' => 'dca', 'DCAR_028754' => 'dca', 'DCAR_028755' => 'dca', 'Dinv31218' => 'din', 'Dinv32371' => 'din', 'Dinv34250' => 'din', 'Dinv37156' => 'din', 'Dinv43704' => 'din', 'Duzib093G1811' => 'dzi', 'Duzib106G1622' => 'dzi', 'Duzib114G0504' => 'dzi', 'Duzib128G0338' => 'dzi', 'Duzib128G1577' => 'dzi', 'Duzib133G0104' => 'dzi', 'Duzib133G1080' => 'dzi', 'Duzib138G0324' => 'dzi', 'Duzib138G0394' => 'dzi', 'Duzib205G0122' => 'dzi', 'Duzib268G1020' => 'dzi', 'Duzib268G1359' => 'dzi', 'ECA232G3929' => 'eca', 'ECA236G2210' => 'eca', 'ECA236G2287' => 'eca', 'ECA240G4568' => 'eca', 'ECA247G0894' => 'eca', 'EL10Ac1g00200' => 'bvu', 'EL10Ac1g00886' => 'bvu', 'EL10As1g23091' => 'bvu', 'EL10As1g23092' => 'bvu', 'Eucgr.A01284' => 'egr', 'Eucgr.A01285' => 'egr', 'Eucgr.D02456' => 'egr', 'Eucgr.E00018' => 'egr', 'Eucgr.E01439' => 'egr', 'Eucgr.G02859' => 'egr', 'FAN01G0168' => 'fan', 'FAN01G0453' => 'fan', 'FAN01G2761' => 'fan', 'FAN02G1239' => 'fan', 'FAN03G0645' => 'fan', 'FAN03G2707' => 'fan', 'FAN03G2978' => 'fan', 'FAN04G0227' => 'fan', 'FAN06G0091' => 'fan', 'FAN06G1418' => 'fan', 'FAN06G1512' => 'fan', 'FAN06G1986' => 'fan', 'FAN06G2905' => 'fan', 'FAN06G4325' => 'fan', 'FAN08G0033' => 'fan', 'FAN09G0642' => 'fan', 'FAN10G1763' => 'fan', 'FAN10G2026' => 'fan', 'FAN10G2513' => 'fan', 'FAN10G3402' => 'fan', 'FAN10G3564' => 'fan', 'FAN10G3987' => 'fan', 'FAN13G1490' => 'fan', 'FAN14G5857' => 'fan', 'FAN18G1188' => 'fan', 'FvH4_5g00750' => 'fve', 'FvH4_6g13410' => 'fve', 'FvH4_7g11740' => 'fve', 'FvH4_7g17410' => 'fve', 'FvH4_7g18860' => 'fve', 'Glyma.01G099100' => 'gma', 'Glyma.01G142300' => 'gma', 'Glyma.03G025500' => 'gma', 'Glyma.03G069700' => 'gma', 'Glyma.03G260000' => 'gma', 'Glyma.09G269800' => 'gma', 'Glyma.10G208700' => 'gma', 'Glyma.18G220400' => 'gma', 'Glyma.20G182000' => 'gma', 'Gohir.A01G221726' => 'ghi', 'Gohir.A07G134600' => 'ghi', 'Gohir.A07G146000' => 'ghi', 'Gohir.A08G173900' => 'ghi', 'Gohir.A09G194900' => 'ghi', 'Gohir.A10G204100' => 'ghi', 'Gohir.A11G080600' => 'ghi', 'Gohir.A11G327500' => 'ghi', 'Gohir.A12G101800' => 'ghi', 'Gohir.D01G211200' => 'ghi', 'Gohir.D07G139200' => 'ghi', 'Gohir.D07G152100' => 'ghi', 'Gohir.D08G192600' => 'ghi', 'Gohir.D09G189200' => 'ghi', 'Gohir.D10G212000' => 'ghi', 'Gohir.D11G085200' => 'ghi', 'Gohir.D11G346400' => 'ghi', 'Gohir.D12G104800' => 'ghi', 'Gorai.001G151300' => 'gra', 'Gorai.001G174100' => 'gra', 'Gorai.002G257000' => 'gra', 'Gorai.004G202600' => 'gra', 'Gorai.007G090900' => 'gra', 'Gorai.007G376700' => 'gra', 'Gorai.008G114100' => 'gra', 'Gorai.011G237900' => 'gra', 'GSVIVG01005450001' => 'vvi', 'GSVIVG01016232001' => 'vvi', 'GSVIVG01026157001' => 'vvi', 'GSVIVG01027419001' => 'vvi', 'GSVIVG01027631001' => 'vvi', 'GSVIVG01034143001' => 'vvi', 'HanXRQChr03g0093921' => 'han', 'HanXRQChr04g0120001' => 'han', 'HanXRQChr04g0122561' => 'han', 'HanXRQChr09g0246851' => 'han', 'HanXRQChr10g0293311' => 'han', 'HanXRQChr13g0425231' => 'han', 'HanXRQChr16g0532571' => 'han', 'Haze_09050' => 'cav', 'Haze_15715' => 'cav', 'Haze_15716' => 'cav', 'Haze_16803' => 'cav', 'Haze_16850' => 'cav', 'Hma1.2p1_0301F.1_g118655' => 'hma', 'Hma1.2p1_0309F.1_g120590' => 'hma', 'Hma1.2p1_0936F.1_g238900' => 'hma', 'Hma1.2p1_3552F.1_g336740' => 'hma', 'HPP92_003520' => 'vpl', 'HPP92_006628' => 'vpl', 'HPP92_006645' => 'vpl', 'HPP92_014669' => 'vpl', 'HPP92_015077' => 'vpl', 'Hund16742' => 'sun', 'Hund17022' => 'sun', 'Lalb_Chr02g0152131' => 'lal', 'Lalb_Chr05g0225371' => 'lal', 'Lalb_Chr07g0189841' => 'lal', 'Lalb_Chr07g0192961' => 'lal', 'Lalb_Chr12g0208221' => 'lal', 'Lalb_Chr13g0291211' => 'lal', 'Lalb_Chr13g0291781' => 'lal', 'Lalb_Chr18g0044651' => 'lal', 'Lalb_Chr21g0313731' => 'lal', 'Lj1g0022533' => 'lja', 'Lj2A18T50' => 'lonja', 'Lj2A92G93' => 'lonja', 'Lj3A965T73' => 'lonja', 'Lj3g0000673' => 'lja', 'Lj3g0002666' => 'lja', 'Lj4g0016985' => 'lja', 'Lj5g0003625' => 'lja', 'Lj7A529G36' => 'lonja', 'Lj9A569T49' => 'lonja', 'Lj9A604T63' => 'lonja', 'Lsat_1_v5_gn_3_132060' => 'lsa', 'Lsat_1_v5_gn_4_68941' => 'lsa', 'Lsat_1_v5_gn_5_95580' => 'lsa', 'Lsat_1_v5_gn_7_161' => 'lsa', 'Lsat_1_v5_gn_7_7041' => 'lsa', 'Lsat_1_v5_gn_9_33481' => 'lsa', 'Lsat_1_v5_gn_9_68260' => 'lsa', 'Manes.01G073100' => 'mes', 'Manes.01G266300' => 'mes', 'Manes.02G033300' => 'mes', 'Manes.05G017900' => 'mes', 'Manes.05G046100' => 'mes', 'Manes.08G080900' => 'mes', 'Manes.10G049400' => 'mes', 'Mapoly0009s0186' => 'mpo', 'Mapoly0036s0118' => 'mpo', 'Mapoly0101s0046' => 'mpo', 'MBI04_g30218_MAGBIO' => 'mbi', 'MBI04_g35564_MAGBIO' => 'mbi', 'MBI12_g34011_MAGBIO' => 'mbi', 'MBI14_g04655_MAGBIO' => 'mbi', 'MCO07G653' => 'mco', 'MCO10G173' => 'mco', 'MD01G1087100' => 'mdo', 'MD01G1104200' => 'mdo', 'MD02G1205100' => 'mdo', 'MD04G1079200' => 'mdo', 'MD04G1131400' => 'mdo', 'MD07G1121600' => 'mdo', 'MD07G1157300' => 'mdo', 'MD07G1171000' => 'mdo', 'MD12G1144500' => 'mdo', 'Medtr1g094610' => 'mtr', 'Medtr4g021795' => 'mtr', 'Medtr4g023760' => 'mtr', 'Medtr7g118050' => 'mtr', 'MELO3C005582.2' => 'cme', 'MELO3C005989.2' => 'cme', 'MELO3C006192.2' => 'cme', 'MELO3C009248.2' => 'cme', 'MELO3C019817.2' => 'cme', 'Migut.B01625' => 'egut', 'Migut.B01915' => 'egut', 'Migut.F01721' => 'egut', 'Migut.J00314' => 'egut', 'MSTRG.20742' => 'ama', 'MSTRG.8134' => 'ama', 'Nitab4.5_0000096g0010' => 'nta', 'Nitab4.5_0000202g0030' => 'nta', 'Nitab4.5_0000216g0370' => 'nta', 'Nitab4.5_0000457g0230' => 'nta', 'Nitab4.5_0001702g0170' => 'nta', 'Nitab4.5_0003607g0010' => 'nta', 'Nitab4.5_0004917g0020' => 'nta', 'Nitab4.5_0007059g0010' => 'nta', 'Nitab4.5_0007184g0010' => 'nta', 'Nitab4.5_0007346g0020' => 'nta', 'Nn1g00410' => 'nnu', 'Nn1g01252' => 'nnu', 'Nn2g11168' => 'nnu', 'Nn2g13403' => 'nnu', 'Nn2g13760' => 'nnu', 'Nn4g26380' => 'nnu', 'Oeu000806.2' => 'oeu', 'Oeu005788.1' => 'oeu', 'Oeu006900.3' => 'oeu', 'Oeu007797.1' => 'oeu', 'Oeu011932.1' => 'oeu', 'Oeu022739.1' => 'oeu', 'Oeu037918.1' => 'oeu', 'Oeu055490.2' => 'oeu', 'Os01g0844400' => 'osa', 'Os02g0819100' => 'osa', 'Os03g0804300' => 'osa', 'Os05g0458000' => 'osa', 'Os07g0467800' => 'osa', 'Os12g0602200' => 'osa', 'Peaxi162Scf00013g03444' => 'pax', 'Peaxi162Scf00094g01120' => 'pax', 'Peaxi162Scf00191g01211' => 'pax', 'Peaxi162Scf00238g01110' => 'pax', 'Peaxi162Scf00330g00719' => 'pax', 'Peaxi162Scf00627g00018' => 'pax', 'PGR031G2686' => 'pgr', 'PGR042G0809' => 'pgr', 'PGR142G0193' => 'pgr', 'PGSC0003DMG400011066' => 'stu', 'PGSC0003DMG400012041' => 'stu', 'PGSC0003DMG400013678' => 'stu', 'PGSC0003DMG400023477' => 'stu', 'PGSC0003DMG400025956' => 'stu', 'PGSC0003DMG401019151' => 'stu', 'Phvul.006G116400' => 'pvu', 'Phvul.007G097300' => 'pvu', 'Phvul.010G015000' => 'pvu', 'Phvul.010G083900' => 'pvu', 'Potri.001G117100' => 'ptr', 'Potri.002G147300' => 'ptr', 'Potri.003G115600' => 'ptr', 'Potri.006G087400' => 'ptr', 'Potri.010G226100' => 'ptr', 'Potri.014G069200' => 'ptr', 'Potri.014G104000' => 'ptr', 'Potri.016G100200' => 'ptr', 'Pp3c10_20450' => 'ppa', 'Pp3c1_42400' => 'ppa', 'Pp3c3_24390' => 'ppa', 'Pp3c3_2860' => 'ppa', 'PRCOL_00003193' => 'pco', 'Prupe.2G144500' => 'ppe', 'Prupe.2G195700' => 'ppe', 'Prupe.2G209800' => 'ppe', 'Prupe.5G080000' => 'ppe', 'Prupe.6G257900' => 'ppe', 'Psat3g001160' => 'psa', 'Psat6g181880' => 'psa', 'Psat7g233720' => 'psa', 'PSO063G7587' => 'pso', 'PSO339G2145' => 'pso', 'PSO339G3369' => 'pso', 'PSO478G2747' => 'pso', 'PSO513G0140' => 'pso', 'PSO782G1614' => 'pso', 'PSO782G4889' => 'pso', 'PSO782G5485' => 'pso', 'PSO801G0241' => 'pso', 'QL07p048854' => 'qlo', 'QL08p046745' => 'qlo', 'QL08p052606' => 'qlo', 'QL08p053414' => 'qlo', 'QL08p054868' => 'qlo', 'RcHm_v2.0_Chr1g0350251' => 'rch', 'RcHm_v2.0_Chr1g0360851' => 'rch', 'RcHm_v2.0_Chr1g0362791' => 'rch', 'RcHm_v2.0_Chr3g0466281' => 'rch', 'RcHm_v2.0_Chr7g0201481' => 'rch', 'Rhsim01G0148600' => 'rsi', 'Rhsim05G0194400' => 'rsi', 'Rhsim07G0000700' => 'rsi', 'Rhsim07G0000800' => 'rsi', 'Rhsim07G0027900' => 'rsi', 'Rhsim09G0149500' => 'rsi', 'RhsimUnG0186900' => 'rsi', 'Sabra01G0089900' => 'sbr', 'Sabra02G0114700' => 'sbr', 'Sabra02G0116300' => 'sbr', 'Sabra03G0080100' => 'sbr', 'Sabra08G0024300' => 'sbr', 'Sabra10G0174300' => 'sbr', 'Sabra14G0048900' => 'sbr', 'Sabra14G0076500' => 'sbr', 'SalBow5G2513' => 'sbo', 'Sc01g0002300' => 'sci', 'Sc01g0004450' => 'sci', 'Sc06g0001680' => 'sci', 'Sc23g0003580' => 'sci', 'Sed0000913' => 'sed', 'Sed0001655' => 'sed', 'Sed0007745' => 'sed', 'Sed0010951' => 'sed', 'Sed0017599' => 'sed', 'Sed0021405' => 'sed', 'Sed0022810' => 'sed', 'SEGI_07099' => 'sgi', 'SEGI_11931' => 'sgi', 'SEGI_13187' => 'sgi', 'SEGI_29958' => 'sgi', 'SEGI_36351' => 'sgi', 'SGA_v2.0_scaffold126G33770' => 'sas', 'SGA_v2.0_scaffold153G37003' => 'sas', 'SGA_v2.0_scaffold2G01359' => 'sas', 'SGA_v2.0_scaffold5G03064' => 'sas', 'SGA_v2.0_scaffold95G28903' => 'sas', 'SHI12701' => 'shi', 'SHI26410' => 'shi', 'SHI38997' => 'shi', 'SHI53759' => 'shi', 'SHI53886' => 'shi', 'SHI54714' => 'shi', 'SMO011G0041' => 'smo', 'SMO146G0251' => 'smo', 'SMO160G0004' => 'smo', 'SMO174G0057' => 'smo', 'SMO244G0089' => 'smo', 'SMO296G0011' => 'smo', 'Solyc01g091280.3' => 'sly', 'Solyc05g047610.3' => 'sly', 'Solyc05g047640.3' => 'sly', 'Solyc05g055630.3' => 'sly', 'Solyc10g018160.2' => 'sly', 'Solyc10g084820.2' => 'sly', 'Solyc10g086565.2' => 'sly', 'Sopen01g037030' => 'spe', 'Sopen05g027920' => 'spe', 'Sopen05g034070' => 'spe', 'Sopen10g007260' => 'spe', 'Sopen10g034260' => 'spe', 'Sopen10g035950' => 'spe', 'Sp3g07710' => 'spa', 'Sp4g27420' => 'spa', 'Sp5g02450' => 'spa', 'Sp6g01280' => 'spa', 'Sp6g38480' => 'spa', 'Sp7g20780' => 'spa', 'TAR374G1413' => 'tar', 'TAR623G1777' => 'tar', 'TAR629G2370' => 'tar', 'TAR633G1759' => 'tar', 'TAR636G3387' => 'tar', 'THA.LOC104802447' => 'tha', 'THA.LOC104813916' => 'tha', 'THA.LOC104816423' => 'tha', 'THA.LOC104817246' => 'tha', 'THA.LOC104825895' => 'tha', 'Thecc.01G335200' => 'tca', 'Thecc.01G377400' => 'tca', 'Thecc.03G262200' => 'tca', 'Thecc.05G036800' => 'tca', 'Thecc.10G080500' => 'tca', 'Thecc.10G080800' => 'tca', 'Thhalv10001560m.g' => 'esa', 'Thhalv10006120m.g' => 'esa', 'Thhalv10014375m.g' => 'esa', 'Thhalv10021264m.g' => 'esa', 'Thhalv10028856m.g' => 'esa', 'TPR.G1914' => 'tpr', 'TPR.G4757' => 'tpr', 'TPR.G5595' => 'tpr', 'TWI14G0952' => 'twi', 'TWI14G1307' => 'twi', 'TWI38G2143' => 'twi', 'TWI59G0826' => 'twi', 'TWI77G0527' => 'twi', 'TWI81G0150' => 'twi', 'unitig_21.g21018' => 'ugi', 'unitig_26.g9725' => 'ugi', 'unitig_744.g24653' => 'ugi', 'unitig_749.g13778' => 'ugi', 'unitig_899.g15035' => 'ugi', 'vmacro04296' => 'vma', 'vmacro04852' => 'vma', 'vmacro13404' => 'vma', 'vmacro20169' => 'vma', 'vmacro21014' => 'vma', 'VMungo0331G0237' => 'vmu', 'VMungo0331G0706' => 'vmu', 'VMungo0331G1361' => 'vmu', 'VMungo0331G1489' => 'vmu', 'VMungo0540G1037' => 'vmu', 'VMungo0720G2487' => 'vmu', 'VMungo0720G2721' => 'vmu', 'Zm00001eb086860' => 'zma', 'Zm00001eb104760' => 'zma', 'Zm00001eb148220' => 'zma', 'Zm00001eb259030' => 'zma', 'Zm00001eb289590' => 'zma', 'Zm00001eb420150' => 'zma' ), 'gf_id' => 'HOM05D000968', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000968' ), 'data_identifier' => 'HOM05D000968', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000968', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p31690' => 'bna', 'A03p36040' => 'bna', 'A03p53730' => 'bna', 'A04p01410' => 'bna', 'A05p05420' => 'bna', 'A05p39630' => 'bna', 'A05p39640' => 'bna', 'A09p00970' => 'bna', 'A09p53060' => 'bna', 'A10p31890' => 'bna', 'Aa31LG10G15040' => 'aar', 'Aa31LG1G21090' => 'aar', 'Aa31LG1G26900' => 'aar', 'Aa31LG3G1820' => 'aar', 'Aa31LG5G1100' => 'aar', 'Aa31LG6G4740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2265' => 'aag', 'Actinidia07998' => 'ach', 'Actinidia11266' => 'ach', 'Actinidia12682' => 'ach', 'Actinidia26479' => 'ach', 'Actinidia31406' => 'ach', 'Actinidia32437' => 'ach', 'Actinidia38862' => 'ach', 'Ah.05g174230' => 'amhyb', 'Ah.05g179070' => 'amhyb', 'Ah.05g179090' => 'amhyb', 'Ah.12g059950' => 'amhyb', 'AL3G20480' => 'aly', 'AL4G44520' => 'aly', 'AL5G43110' => 'aly', 'AL6G13890' => 'aly', 'AL6G52620' => 'aly', 'AL7G30830' => 'aly', 'Aqoxy1G00899' => 'aox', 'Aqoxy5G04333' => 'aox', 'Aqoxy7G00641' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3IZ0NN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4EF6AW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W9P8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79GA3M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C43NQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFCU6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G95YVJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCHK29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LU1UG8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX91RN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGB4B1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8DA0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9H7JI' => 'arhy', 'AT3G09320' => 'ath', 'AT3G60800' => 'ath', 'AT4G00840' => 'ath', 'AT4G22750' => 'ath', 'AT5G04270' => 'ath', 'ATR0090G003' => 'atr', 'ATR0559G349' => 'atr', 'ATR0680G261' => 'atr', 'ATR0810G048' => 'atr', 'Atru.chr12.831' => 'acertr', 'Atru.chr5.303' => 'acertr', 'Atru.chr5.748' => 'acertr', 'Atru.chr8.1999' => 'acertr', 'Atru.chr9.1436' => 'acertr', 'AUR62004211' => 'cqu', 'AUR62004548' => 'cqu', 'AUR62013637' => 'cqu', 'AUR62022662' => 'cqu', 'AUR62025777' => 'cqu', 'AUR62042386' => 'cqu', 'BcaB01g02310' => 'bca', 'BcaB01g06062' => 'bca', 'BcaB02g08975' => 'bca', 'BcaB02g08980' => 'bca', 'BcaC01g04228' => 'bca', 'BcaC01g06830' => 'bca', 'BcaC02g10186' => 'bca', 'BcaC02g12214' => 'bca', 'BcaC04g24101' => 'bca', 'BcaC05g29520' => 'bca', 'BcaC05g29661' => 'bca', 'BcaC06g32130' => 'bca', 'BcaC06g32131' => 'bca', 'BcaC07g40601' => 'bca', 'BcaC07g42641' => 'bca', 'BcaNung01038' => 'bca', 'BcaNung01676' => 'bca', 'BcaNung02480' => 'bca', 'BcaNung07376' => 'bca', 'BolC3t16146H' => 'bol', 'BolC3t16637H' => 'bol', 'BolC4t22257H' => 'bol', 'BolC4t24728H' => 'bol', 'BolC5t34517H' => 'bol', 'BolC7t45703H' => 'bol', 'BolC8t51166H' => 'bol', 'BolC9t53038H' => 'bol', 'BolC9t60000H' => 'bol', 'BraA01t01345Z' => 'bra', 'BraA01t01346Z' => 'bra', 'BraA01t01348Z' => 'bra', 'BraA03t12347Z' => 'bra', 'BraA03t12775Z' => 'bra', 'BraA03t14439Z' => 'bra', 'BraA04t15860Z' => 'bra', 'BraA05t19511Z' => 'bra', 'BraA05t22746Z' => 'bra', 'BraA09t35767Z' => 'bra', 'BraA09t40732Z' => 'bra', 'BraA10t45233Z' => 'bra', 'C03p38720' => 'bna', 'C03p43680' => 'bna', 'C04p06350' => 'bna', 'C04p31800' => 'bna', 'C05p58680' => 'bna', 'C07p52110' => 'bna', 'C08p35760' => 'bna', 'C09p01050' => 'bna', 'C09p72600' => 'bna', 'CAN.G106.2' => 'can', 'CAN.G1482.1' => 'can', 'CAN.G324.12' => 'can', 'CAN.G388.20' => 'can', 'CAN.G412.7' => 'can', 'CAN.G694.32' => 'can', 'CAN.G92.12' => 'can', 'CANSAT11G2353' => 'cansat', 'CANSAT21G1398' => 'cansat', 'CANSAT56G2456' => 'cansat', 'CANSAT56G3031' => 'cansat', 'CANSAT56G4539' => 'cansat', 'CARHR083680' => 'chi', 'CARHR171190' => 'chi', 'CARHR209010' => 'chi', 'CARHR229680' => 'chi', 'CARHR249490' => 'chi', 'Carub.0003s0844' => 'cru', 'Carub.0005s2755' => 'cru', 'Carub.0006s0322' => 'cru', 'Carub.0006s3586' => 'cru', 'Carub.0007s1855' => 'cru', 'Ca_07808_v3' => 'car', 'Ca_09535_v3' => 'car', 'Ca_10548_v3' => 'car', 'Ca_19913_v3' => 'car', 'Ca_19916_v3' => 'car', 'Ca_19975_v3' => 'car', 'CBR_g22876' => 'cbr', 'CBR_g22879' => 'cbr', 'CBR_g38491' => 'cbr', 'CBR_g54185' => 'cbr', 'CBR_g54190' => 'cbr', 'Cc02_g11020' => 'ccan', 'Cc02_g23920' => 'ccan', 'Cc02_g39860' => 'ccan', 'Cc02_g39870' => 'ccan', 'Cc03_g06760' => 'ccan', 'Cc06_g02450' => 'ccan', 'Cc09_g09450' => 'ccan', 'CDE02G1959' => 'cde', 'CDE04G0600' => 'cde', 'CDE07G1996' => 'cde', 'CDE07G2078' => 'cde', 'CDE11G0611' => 'cde', 'Cfa001683' => 'cfa', 'Cfa001734' => 'cfa', 'Cfa001737' => 'cfa', 'Cfa003751' => 'cfa', 'Cfa012019' => 'cfa', 'Cfa017353' => 'cfa', 'Cfa017732' => 'cfa', 'Cfa022464' => 'cfa', 'Ciclev10012400m.g' => 'ccl', 'Ciclev10021242m.g' => 'ccl', 'Ciclev10021302m.g' => 'ccl', 'Ciclev10021463m.g' => 'ccl', 'Ciclev10032359m.g' => 'ccl', 'CiPaw.01G081000' => 'cil', 'CiPaw.01G262500' => 'cil', 'CiPaw.01G269800' => 'cil', 'CiPaw.02G168400' => 'cil', 'CiPaw.05G119500' => 'cil', 'CiPaw.11G147300' => 'cil', 'ClCG01G003630' => 'cla', 'ClCG05G000510' => 'cla', 'ClCG05G002300' => 'cla', 'ClCG08G007650' => 'cla', 'ClCG10G021250' => 'cla', 'COL.COLO4_06218' => 'col', 'COL.COLO4_12538' => 'col', 'COL.COLO4_14775' => 'col', 'COL.COLO4_23875' => 'col', 'Cpa.g.sc141.16' => 'cpa', 'Cpa.g.sc169.16' => 'cpa', 'Cpa.g.sc244.4' => 'cpa', 'Cpa.g.sc244.5' => 'cpa', 'Cpa.g.sc29.87' => 'cpa', 'Cpa.g.sc53.115' => 'cpa', 'Cre03.g207502' => 'cre', 'Cre06.g277000' => 'cre', 'Cre09.g394050' => 'cre', 'CsaV3_3G007680' => 'csa', 'CsaV3_3G009710' => 'csa', 'CsaV3_3G034790' => 'csa', 'CsaV3_5G003750' => 'csa', 'CsaV3_6G036620' => 'csa', 'CSS0002288' => 'camsi', 'CSS0011250' => 'camsi', 'CSS0021619' => 'camsi', 'CSS0046701' => 'camsi', 'DCAR_006420' => 'dca', 'DCAR_006865' => 'dca', 'DCAR_008558' => 'dca', 'DCAR_028754' => 'dca', 'DCAR_028755' => 'dca', 'Dinv31218' => 'din', 'Dinv32371' => 'din', 'Dinv34250' => 'din', 'Dinv37156' => 'din', 'Dinv43704' => 'din', 'Duzib093G1811' => 'dzi', 'Duzib106G1622' => 'dzi', 'Duzib114G0504' => 'dzi', 'Duzib128G0338' => 'dzi', 'Duzib128G1577' => 'dzi', 'Duzib133G0104' => 'dzi', 'Duzib133G1080' => 'dzi', 'Duzib138G0324' => 'dzi', 'Duzib138G0394' => 'dzi', 'Duzib205G0122' => 'dzi', 'Duzib268G1020' => 'dzi', 'Duzib268G1359' => 'dzi', 'ECA232G3929' => 'eca', 'ECA236G2210' => 'eca', 'ECA236G2287' => 'eca', 'ECA240G4568' => 'eca', 'ECA247G0894' => 'eca', 'EL10Ac1g00200' => 'bvu', 'EL10Ac1g00886' => 'bvu', 'EL10As1g23091' => 'bvu', 'EL10As1g23092' => 'bvu', 'Eucgr.A01284' => 'egr', 'Eucgr.A01285' => 'egr', 'Eucgr.D02456' => 'egr', 'Eucgr.E00018' => 'egr', 'Eucgr.E01439' => 'egr', 'Eucgr.G02859' => 'egr', 'FAN01G0168' => 'fan', 'FAN01G0453' => 'fan', 'FAN01G2761' => 'fan', 'FAN02G1239' => 'fan', 'FAN03G0645' => 'fan', 'FAN03G2707' => 'fan', 'FAN03G2978' => 'fan', 'FAN04G0227' => 'fan', 'FAN06G0091' => 'fan', 'FAN06G1418' => 'fan', 'FAN06G1512' => 'fan', 'FAN06G1986' => 'fan', 'FAN06G2905' => 'fan', 'FAN06G4325' => 'fan', 'FAN08G0033' => 'fan', 'FAN09G0642' => 'fan', 'FAN10G1763' => 'fan', 'FAN10G2026' => 'fan', 'FAN10G2513' => 'fan', 'FAN10G3402' => 'fan', 'FAN10G3564' => 'fan', 'FAN10G3987' => 'fan', 'FAN13G1490' => 'fan', 'FAN14G5857' => 'fan', 'FAN18G1188' => 'fan', 'FvH4_5g00750' => 'fve', 'FvH4_6g13410' => 'fve', 'FvH4_7g11740' => 'fve', 'FvH4_7g17410' => 'fve', 'FvH4_7g18860' => 'fve', 'Glyma.01G099100' => 'gma', 'Glyma.01G142300' => 'gma', 'Glyma.03G025500' => 'gma', 'Glyma.03G069700' => 'gma', 'Glyma.03G260000' => 'gma', 'Glyma.09G269800' => 'gma', 'Glyma.10G208700' => 'gma', 'Glyma.18G220400' => 'gma', 'Glyma.20G182000' => 'gma', 'Gohir.A01G221726' => 'ghi', 'Gohir.A07G134600' => 'ghi', 'Gohir.A07G146000' => 'ghi', 'Gohir.A08G173900' => 'ghi', 'Gohir.A09G194900' => 'ghi', 'Gohir.A10G204100' => 'ghi', 'Gohir.A11G080600' => 'ghi', 'Gohir.A11G327500' => 'ghi', 'Gohir.A12G101800' => 'ghi', 'Gohir.D01G211200' => 'ghi', 'Gohir.D07G139200' => 'ghi', 'Gohir.D07G152100' => 'ghi', 'Gohir.D08G192600' => 'ghi', 'Gohir.D09G189200' => 'ghi', 'Gohir.D10G212000' => 'ghi', 'Gohir.D11G085200' => 'ghi', 'Gohir.D11G346400' => 'ghi', 'Gohir.D12G104800' => 'ghi', 'Gorai.001G151300' => 'gra', 'Gorai.001G174100' => 'gra', 'Gorai.002G257000' => 'gra', 'Gorai.004G202600' => 'gra', 'Gorai.007G090900' => 'gra', 'Gorai.007G376700' => 'gra', 'Gorai.008G114100' => 'gra', 'Gorai.011G237900' => 'gra', 'GSVIVG01005450001' => 'vvi', 'GSVIVG01016232001' => 'vvi', 'GSVIVG01026157001' => 'vvi', 'GSVIVG01027419001' => 'vvi', 'GSVIVG01027631001' => 'vvi', 'GSVIVG01034143001' => 'vvi', 'HanXRQChr03g0093921' => 'han', 'HanXRQChr04g0120001' => 'han', 'HanXRQChr04g0122561' => 'han', 'HanXRQChr09g0246851' => 'han', 'HanXRQChr10g0293311' => 'han', 'HanXRQChr13g0425231' => 'han', 'HanXRQChr16g0532571' => 'han', 'Haze_09050' => 'cav', 'Haze_15715' => 'cav', 'Haze_15716' => 'cav', 'Haze_16803' => 'cav', 'Haze_16850' => 'cav', 'Hma1.2p1_0301F.1_g118655' => 'hma', 'Hma1.2p1_0309F.1_g120590' => 'hma', 'Hma1.2p1_0936F.1_g238900' => 'hma', 'Hma1.2p1_3552F.1_g336740' => 'hma', 'HPP92_003520' => 'vpl', 'HPP92_006628' => 'vpl', 'HPP92_006645' => 'vpl', 'HPP92_014669' => 'vpl', 'HPP92_015077' => 'vpl', 'Hund16742' => 'sun', 'Hund17022' => 'sun', 'Lalb_Chr02g0152131' => 'lal', 'Lalb_Chr05g0225371' => 'lal', 'Lalb_Chr07g0189841' => 'lal', 'Lalb_Chr07g0192961' => 'lal', 'Lalb_Chr12g0208221' => 'lal', 'Lalb_Chr13g0291211' => 'lal', 'Lalb_Chr13g0291781' => 'lal', 'Lalb_Chr18g0044651' => 'lal', 'Lalb_Chr21g0313731' => 'lal', 'Lj1g0022533' => 'lja', 'Lj2A18T50' => 'lonja', 'Lj2A92G93' => 'lonja', 'Lj3A965T73' => 'lonja', 'Lj3g0000673' => 'lja', 'Lj3g0002666' => 'lja', 'Lj4g0016985' => 'lja', 'Lj5g0003625' => 'lja', 'Lj7A529G36' => 'lonja', 'Lj9A569T49' => 'lonja', 'Lj9A604T63' => 'lonja', 'Lsat_1_v5_gn_3_132060' => 'lsa', 'Lsat_1_v5_gn_4_68941' => 'lsa', 'Lsat_1_v5_gn_5_95580' => 'lsa', 'Lsat_1_v5_gn_7_161' => 'lsa', 'Lsat_1_v5_gn_7_7041' => 'lsa', 'Lsat_1_v5_gn_9_33481' => 'lsa', 'Lsat_1_v5_gn_9_68260' => 'lsa', 'Manes.01G073100' => 'mes', 'Manes.01G266300' => 'mes', 'Manes.02G033300' => 'mes', 'Manes.05G017900' => 'mes', 'Manes.05G046100' => 'mes', 'Manes.08G080900' => 'mes', 'Manes.10G049400' => 'mes', 'Mapoly0009s0186' => 'mpo', 'Mapoly0036s0118' => 'mpo', 'Mapoly0101s0046' => 'mpo', 'MBI04_g30218_MAGBIO' => 'mbi', 'MBI04_g35564_MAGBIO' => 'mbi', 'MBI12_g34011_MAGBIO' => 'mbi', 'MBI14_g04655_MAGBIO' => 'mbi', 'MCO07G653' => 'mco', 'MCO10G173' => 'mco', 'MD01G1087100' => 'mdo', 'MD01G1104200' => 'mdo', 'MD02G1205100' => 'mdo', 'MD04G1079200' => 'mdo', 'MD04G1131400' => 'mdo', 'MD07G1121600' => 'mdo', 'MD07G1157300' => 'mdo', 'MD07G1171000' => 'mdo', 'MD12G1144500' => 'mdo', 'Medtr1g094610' => 'mtr', 'Medtr4g021795' => 'mtr', 'Medtr4g023760' => 'mtr', 'Medtr7g118050' => 'mtr', 'MELO3C005582.2' => 'cme', 'MELO3C005989.2' => 'cme', 'MELO3C006192.2' => 'cme', 'MELO3C009248.2' => 'cme', 'MELO3C019817.2' => 'cme', 'Migut.B01625' => 'egut', 'Migut.B01915' => 'egut', 'Migut.F01721' => 'egut', 'Migut.J00314' => 'egut', 'MSTRG.20742' => 'ama', 'MSTRG.8134' => 'ama', 'Nitab4.5_0000096g0010' => 'nta', 'Nitab4.5_0000202g0030' => 'nta', 'Nitab4.5_0000216g0370' => 'nta', 'Nitab4.5_0000457g0230' => 'nta', 'Nitab4.5_0001702g0170' => 'nta', 'Nitab4.5_0003607g0010' => 'nta', 'Nitab4.5_0004917g0020' => 'nta', 'Nitab4.5_0007059g0010' => 'nta', 'Nitab4.5_0007184g0010' => 'nta', 'Nitab4.5_0007346g0020' => 'nta', 'Nn1g00410' => 'nnu', 'Nn1g01252' => 'nnu', 'Nn2g11168' => 'nnu', 'Nn2g13403' => 'nnu', 'Nn2g13760' => 'nnu', 'Nn4g26380' => 'nnu', 'Oeu000806.2' => 'oeu', 'Oeu005788.1' => 'oeu', 'Oeu006900.3' => 'oeu', 'Oeu007797.1' => 'oeu', 'Oeu011932.1' => 'oeu', 'Oeu022739.1' => 'oeu', 'Oeu037918.1' => 'oeu', 'Oeu055490.2' => 'oeu', 'Os01g0844400' => 'osa', 'Os02g0819100' => 'osa', 'Os03g0804300' => 'osa', 'Os05g0458000' => 'osa', 'Os07g0467800' => 'osa', 'Os12g0602200' => 'osa', 'Peaxi162Scf00013g03444' => 'pax', 'Peaxi162Scf00094g01120' => 'pax', 'Peaxi162Scf00191g01211' => 'pax', 'Peaxi162Scf00238g01110' => 'pax', 'Peaxi162Scf00330g00719' => 'pax', 'Peaxi162Scf00627g00018' => 'pax', 'PGR031G2686' => 'pgr', 'PGR042G0809' => 'pgr', 'PGR142G0193' => 'pgr', 'PGSC0003DMG400011066' => 'stu', 'PGSC0003DMG400012041' => 'stu', 'PGSC0003DMG400013678' => 'stu', 'PGSC0003DMG400023477' => 'stu', 'PGSC0003DMG400025956' => 'stu', 'PGSC0003DMG401019151' => 'stu', 'Phvul.006G116400' => 'pvu', 'Phvul.007G097300' => 'pvu', 'Phvul.010G015000' => 'pvu', 'Phvul.010G083900' => 'pvu', 'Potri.001G117100' => 'ptr', 'Potri.002G147300' => 'ptr', 'Potri.003G115600' => 'ptr', 'Potri.006G087400' => 'ptr', 'Potri.010G226100' => 'ptr', 'Potri.014G069200' => 'ptr', 'Potri.014G104000' => 'ptr', 'Potri.016G100200' => 'ptr', 'Pp3c10_20450' => 'ppa', 'Pp3c1_42400' => 'ppa', 'Pp3c3_24390' => 'ppa', 'Pp3c3_2860' => 'ppa', 'PRCOL_00003193' => 'pco', 'Prupe.2G144500' => 'ppe', 'Prupe.2G195700' => 'ppe', 'Prupe.2G209800' => 'ppe', 'Prupe.5G080000' => 'ppe', 'Prupe.6G257900' => 'ppe', 'Psat3g001160' => 'psa', 'Psat6g181880' => 'psa', 'Psat7g233720' => 'psa', 'PSO063G7587' => 'pso', 'PSO339G2145' => 'pso', 'PSO339G3369' => 'pso', 'PSO478G2747' => 'pso', 'PSO513G0140' => 'pso', 'PSO782G1614' => 'pso', 'PSO782G4889' => 'pso', 'PSO782G5485' => 'pso', 'PSO801G0241' => 'pso', 'QL07p048854' => 'qlo', 'QL08p046745' => 'qlo', 'QL08p052606' => 'qlo', 'QL08p053414' => 'qlo', 'QL08p054868' => 'qlo', 'RcHm_v2.0_Chr1g0350251' => 'rch', 'RcHm_v2.0_Chr1g0360851' => 'rch', 'RcHm_v2.0_Chr1g0362791' => 'rch', 'RcHm_v2.0_Chr3g0466281' => 'rch', 'RcHm_v2.0_Chr7g0201481' => 'rch', 'Rhsim01G0148600' => 'rsi', 'Rhsim05G0194400' => 'rsi', 'Rhsim07G0000700' => 'rsi', 'Rhsim07G0000800' => 'rsi', 'Rhsim07G0027900' => 'rsi', 'Rhsim09G0149500' => 'rsi', 'RhsimUnG0186900' => 'rsi', 'Sabra01G0089900' => 'sbr', 'Sabra02G0114700' => 'sbr', 'Sabra02G0116300' => 'sbr', 'Sabra03G0080100' => 'sbr', 'Sabra08G0024300' => 'sbr', 'Sabra10G0174300' => 'sbr', 'Sabra14G0048900' => 'sbr', 'Sabra14G0076500' => 'sbr', 'SalBow5G2513' => 'sbo', 'Sc01g0002300' => 'sci', 'Sc01g0004450' => 'sci', 'Sc06g0001680' => 'sci', 'Sc23g0003580' => 'sci', 'Sed0000913' => 'sed', 'Sed0001655' => 'sed', 'Sed0007745' => 'sed', 'Sed0010951' => 'sed', 'Sed0017599' => 'sed', 'Sed0021405' => 'sed', 'Sed0022810' => 'sed', 'SEGI_07099' => 'sgi', 'SEGI_11931' => 'sgi', 'SEGI_13187' => 'sgi', 'SEGI_29958' => 'sgi', 'SEGI_36351' => 'sgi', 'SGA_v2.0_scaffold126G33770' => 'sas', 'SGA_v2.0_scaffold153G37003' => 'sas', 'SGA_v2.0_scaffold2G01359' => 'sas', 'SGA_v2.0_scaffold5G03064' => 'sas', 'SGA_v2.0_scaffold95G28903' => 'sas', 'SHI12701' => 'shi', 'SHI26410' => 'shi', 'SHI38997' => 'shi', 'SHI53759' => 'shi', 'SHI53886' => 'shi', 'SHI54714' => 'shi', 'SMO011G0041' => 'smo', 'SMO146G0251' => 'smo', 'SMO160G0004' => 'smo', 'SMO174G0057' => 'smo', 'SMO244G0089' => 'smo', 'SMO296G0011' => 'smo', 'Solyc01g091280.3' => 'sly', 'Solyc05g047610.3' => 'sly', 'Solyc05g047640.3' => 'sly', 'Solyc05g055630.3' => 'sly', 'Solyc10g018160.2' => 'sly', 'Solyc10g084820.2' => 'sly', 'Solyc10g086565.2' => 'sly', 'Sopen01g037030' => 'spe', 'Sopen05g027920' => 'spe', 'Sopen05g034070' => 'spe', 'Sopen10g007260' => 'spe', 'Sopen10g034260' => 'spe', 'Sopen10g035950' => 'spe', 'Sp3g07710' => 'spa', 'Sp4g27420' => 'spa', 'Sp5g02450' => 'spa', 'Sp6g01280' => 'spa', 'Sp6g38480' => 'spa', 'Sp7g20780' => 'spa', 'TAR374G1413' => 'tar', 'TAR623G1777' => 'tar', 'TAR629G2370' => 'tar', 'TAR633G1759' => 'tar', 'TAR636G3387' => 'tar', 'THA.LOC104802447' => 'tha', 'THA.LOC104813916' => 'tha', 'THA.LOC104816423' => 'tha', 'THA.LOC104817246' => 'tha', 'THA.LOC104825895' => 'tha', 'Thecc.01G335200' => 'tca', 'Thecc.01G377400' => 'tca', 'Thecc.03G262200' => 'tca', 'Thecc.05G036800' => 'tca', 'Thecc.10G080500' => 'tca', 'Thecc.10G080800' => 'tca', 'Thhalv10001560m.g' => 'esa', 'Thhalv10006120m.g' => 'esa', 'Thhalv10014375m.g' => 'esa', 'Thhalv10021264m.g' => 'esa', 'Thhalv10028856m.g' => 'esa', 'TPR.G1914' => 'tpr', 'TPR.G4757' => 'tpr', 'TPR.G5595' => 'tpr', 'TWI14G0952' => 'twi', 'TWI14G1307' => 'twi', 'TWI38G2143' => 'twi', 'TWI59G0826' => 'twi', 'TWI77G0527' => 'twi', 'TWI81G0150' => 'twi', 'unitig_21.g21018' => 'ugi', 'unitig_26.g9725' => 'ugi', 'unitig_744.g24653' => 'ugi', 'unitig_749.g13778' => 'ugi', 'unitig_899.g15035' => 'ugi', 'vmacro04296' => 'vma', 'vmacro04852' => 'vma', 'vmacro13404' => 'vma', 'vmacro20169' => 'vma', 'vmacro21014' => 'vma', 'VMungo0331G0237' => 'vmu', 'VMungo0331G0706' => 'vmu', 'VMungo0331G1361' => 'vmu', 'VMungo0331G1489' => 'vmu', 'VMungo0540G1037' => 'vmu', 'VMungo0720G2487' => 'vmu', 'VMungo0720G2721' => 'vmu', 'Zm00001eb086860' => 'zma', 'Zm00001eb104760' => 'zma', 'Zm00001eb148220' => 'zma', 'Zm00001eb259030' => 'zma', 'Zm00001eb289590' => 'zma', 'Zm00001eb420150' => 'zma' ) $gf_id = 'HOM05D000968' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000968' ) $data_identifier = 'HOM05D000968' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 19, 'bol' => (int) 9, 'bra' => (int) 12, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 5, 'ccan' => (int) 7, 'cde' => (int) 5, 'cfa' => (int) 8, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 4, 'dca' => (int) 5, 'din' => (int) 5, 'dzi' => (int) 12, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 25, 'fve' => (int) 5, 'gma' => (int) 9, 'ghi' => (int) 18, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 7, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 5, 'sun' => (int) 2, 'lal' => (int) 9, 'lja' => (int) 5, 'lonja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 9, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 2, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 3, 'stu' => (int) 6, 'pvu' => (int) 4, 'ptr' => (int) 8, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 3, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 1, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 5, 'sas' => (int) 5, 'shi' => (int) 6, 'smo' => (int) 6, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 3, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420150' $species_info = array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ) $local_species = 'mes' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000968', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p31690' => 'bna', 'A03p36040' => 'bna', 'A03p53730' => 'bna', 'A04p01410' => 'bna', 'A05p05420' => 'bna', 'A05p39630' => 'bna', 'A05p39640' => 'bna', 'A09p00970' => 'bna', 'A09p53060' => 'bna', 'A10p31890' => 'bna', 'Aa31LG10G15040' => 'aar', 'Aa31LG1G21090' => 'aar', 'Aa31LG1G26900' => 'aar', 'Aa31LG3G1820' => 'aar', 'Aa31LG5G1100' => 'aar', 'Aa31LG6G4740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2265' => 'aag', 'Actinidia07998' => 'ach', 'Actinidia11266' => 'ach', 'Actinidia12682' => 'ach', 'Actinidia26479' => 'ach', 'Actinidia31406' => 'ach', 'Actinidia32437' => 'ach', 'Actinidia38862' => 'ach', 'Ah.05g174230' => 'amhyb', 'Ah.05g179070' => 'amhyb', 'Ah.05g179090' => 'amhyb', 'Ah.12g059950' => 'amhyb', 'AL3G20480' => 'aly', 'AL4G44520' => 'aly', 'AL5G43110' => 'aly', 'AL6G13890' => 'aly', 'AL6G52620' => 'aly', 'AL7G30830' => 'aly', 'Aqoxy1G00899' => 'aox', 'Aqoxy5G04333' => 'aox', 'Aqoxy7G00641' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3IZ0NN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4EF6AW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W9P8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79GA3M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C43NQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFCU6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G95YVJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCHK29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LU1UG8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX91RN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGB4B1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8DA0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9H7JI' => 'arhy', 'AT3G09320' => 'ath', 'AT3G60800' => 'ath', 'AT4G00840' => 'ath', 'AT4G22750' => 'ath', 'AT5G04270' => 'ath', 'ATR0090G003' => 'atr', 'ATR0559G349' => 'atr', 'ATR0680G261' => 'atr', 'ATR0810G048' => 'atr', 'Atru.chr12.831' => 'acertr', 'Atru.chr5.303' => 'acertr', 'Atru.chr5.748' => 'acertr', 'Atru.chr8.1999' => 'acertr', 'Atru.chr9.1436' => 'acertr', 'AUR62004211' => 'cqu', 'AUR62004548' => 'cqu', 'AUR62013637' => 'cqu', 'AUR62022662' => 'cqu', 'AUR62025777' => 'cqu', 'AUR62042386' => 'cqu', 'BcaB01g02310' => 'bca', 'BcaB01g06062' => 'bca', 'BcaB02g08975' => 'bca', 'BcaB02g08980' => 'bca', 'BcaC01g04228' => 'bca', 'BcaC01g06830' => 'bca', 'BcaC02g10186' => 'bca', 'BcaC02g12214' => 'bca', 'BcaC04g24101' => 'bca', 'BcaC05g29520' => 'bca', 'BcaC05g29661' => 'bca', 'BcaC06g32130' => 'bca', 'BcaC06g32131' => 'bca', 'BcaC07g40601' => 'bca', 'BcaC07g42641' => 'bca', 'BcaNung01038' => 'bca', 'BcaNung01676' => 'bca', 'BcaNung02480' => 'bca', 'BcaNung07376' => 'bca', 'BolC3t16146H' => 'bol', 'BolC3t16637H' => 'bol', 'BolC4t22257H' => 'bol', 'BolC4t24728H' => 'bol', 'BolC5t34517H' => 'bol', 'BolC7t45703H' => 'bol', 'BolC8t51166H' => 'bol', 'BolC9t53038H' => 'bol', 'BolC9t60000H' => 'bol', 'BraA01t01345Z' => 'bra', 'BraA01t01346Z' => 'bra', 'BraA01t01348Z' => 'bra', 'BraA03t12347Z' => 'bra', 'BraA03t12775Z' => 'bra', 'BraA03t14439Z' => 'bra', 'BraA04t15860Z' => 'bra', 'BraA05t19511Z' => 'bra', 'BraA05t22746Z' => 'bra', 'BraA09t35767Z' => 'bra', 'BraA09t40732Z' => 'bra', 'BraA10t45233Z' => 'bra', 'C03p38720' => 'bna', 'C03p43680' => 'bna', 'C04p06350' => 'bna', 'C04p31800' => 'bna', 'C05p58680' => 'bna', 'C07p52110' => 'bna', 'C08p35760' => 'bna', 'C09p01050' => 'bna', 'C09p72600' => 'bna', 'CAN.G106.2' => 'can', 'CAN.G1482.1' => 'can', 'CAN.G324.12' => 'can', 'CAN.G388.20' => 'can', 'CAN.G412.7' => 'can', 'CAN.G694.32' => 'can', 'CAN.G92.12' => 'can', 'CANSAT11G2353' => 'cansat', 'CANSAT21G1398' => 'cansat', 'CANSAT56G2456' => 'cansat', 'CANSAT56G3031' => 'cansat', 'CANSAT56G4539' => 'cansat', 'CARHR083680' => 'chi', 'CARHR171190' => 'chi', 'CARHR209010' => 'chi', 'CARHR229680' => 'chi', 'CARHR249490' => 'chi', 'Carub.0003s0844' => 'cru', 'Carub.0005s2755' => 'cru', 'Carub.0006s0322' => 'cru', 'Carub.0006s3586' => 'cru', 'Carub.0007s1855' => 'cru', 'Ca_07808_v3' => 'car', 'Ca_09535_v3' => 'car', 'Ca_10548_v3' => 'car', 'Ca_19913_v3' => 'car', 'Ca_19916_v3' => 'car', 'Ca_19975_v3' => 'car', 'CBR_g22876' => 'cbr', 'CBR_g22879' => 'cbr', 'CBR_g38491' => 'cbr', 'CBR_g54185' => 'cbr', 'CBR_g54190' => 'cbr', 'Cc02_g11020' => 'ccan', 'Cc02_g23920' => 'ccan', 'Cc02_g39860' => 'ccan', 'Cc02_g39870' => 'ccan', 'Cc03_g06760' => 'ccan', 'Cc06_g02450' => 'ccan', 'Cc09_g09450' => 'ccan', 'CDE02G1959' => 'cde', 'CDE04G0600' => 'cde', 'CDE07G1996' => 'cde', 'CDE07G2078' => 'cde', 'CDE11G0611' => 'cde', 'Cfa001683' => 'cfa', 'Cfa001734' => 'cfa', 'Cfa001737' => 'cfa', 'Cfa003751' => 'cfa', 'Cfa012019' => 'cfa', 'Cfa017353' => 'cfa', 'Cfa017732' => 'cfa', 'Cfa022464' => 'cfa', 'Ciclev10012400m.g' => 'ccl', 'Ciclev10021242m.g' => 'ccl', 'Ciclev10021302m.g' => 'ccl', 'Ciclev10021463m.g' => 'ccl', 'Ciclev10032359m.g' => 'ccl', 'CiPaw.01G081000' => 'cil', 'CiPaw.01G262500' => 'cil', 'CiPaw.01G269800' => 'cil', 'CiPaw.02G168400' => 'cil', 'CiPaw.05G119500' => 'cil', 'CiPaw.11G147300' => 'cil', 'ClCG01G003630' => 'cla', 'ClCG05G000510' => 'cla', 'ClCG05G002300' => 'cla', 'ClCG08G007650' => 'cla', 'ClCG10G021250' => 'cla', 'COL.COLO4_06218' => 'col', 'COL.COLO4_12538' => 'col', 'COL.COLO4_14775' => 'col', 'COL.COLO4_23875' => 'col', 'Cpa.g.sc141.16' => 'cpa', 'Cpa.g.sc169.16' => 'cpa', 'Cpa.g.sc244.4' => 'cpa', 'Cpa.g.sc244.5' => 'cpa', 'Cpa.g.sc29.87' => 'cpa', 'Cpa.g.sc53.115' => 'cpa', 'Cre03.g207502' => 'cre', 'Cre06.g277000' => 'cre', 'Cre09.g394050' => 'cre', 'CsaV3_3G007680' => 'csa', 'CsaV3_3G009710' => 'csa', 'CsaV3_3G034790' => 'csa', 'CsaV3_5G003750' => 'csa', 'CsaV3_6G036620' => 'csa', 'CSS0002288' => 'camsi', 'CSS0011250' => 'camsi', 'CSS0021619' => 'camsi', 'CSS0046701' => 'camsi', 'DCAR_006420' => 'dca', 'DCAR_006865' => 'dca', 'DCAR_008558' => 'dca', 'DCAR_028754' => 'dca', 'DCAR_028755' => 'dca', 'Dinv31218' => 'din', 'Dinv32371' => 'din', 'Dinv34250' => 'din', 'Dinv37156' => 'din', 'Dinv43704' => 'din', 'Duzib093G1811' => 'dzi', 'Duzib106G1622' => 'dzi', 'Duzib114G0504' => 'dzi', 'Duzib128G0338' => 'dzi', 'Duzib128G1577' => 'dzi', 'Duzib133G0104' => 'dzi', 'Duzib133G1080' => 'dzi', 'Duzib138G0324' => 'dzi', 'Duzib138G0394' => 'dzi', 'Duzib205G0122' => 'dzi', 'Duzib268G1020' => 'dzi', 'Duzib268G1359' => 'dzi', 'ECA232G3929' => 'eca', 'ECA236G2210' => 'eca', 'ECA236G2287' => 'eca', 'ECA240G4568' => 'eca', 'ECA247G0894' => 'eca', 'EL10Ac1g00200' => 'bvu', 'EL10Ac1g00886' => 'bvu', 'EL10As1g23091' => 'bvu', 'EL10As1g23092' => 'bvu', 'Eucgr.A01284' => 'egr', 'Eucgr.A01285' => 'egr', 'Eucgr.D02456' => 'egr', 'Eucgr.E00018' => 'egr', 'Eucgr.E01439' => 'egr', 'Eucgr.G02859' => 'egr', 'FAN01G0168' => 'fan', 'FAN01G0453' => 'fan', 'FAN01G2761' => 'fan', 'FAN02G1239' => 'fan', 'FAN03G0645' => 'fan', 'FAN03G2707' => 'fan', 'FAN03G2978' => 'fan', 'FAN04G0227' => 'fan', 'FAN06G0091' => 'fan', 'FAN06G1418' => 'fan', 'FAN06G1512' => 'fan', 'FAN06G1986' => 'fan', 'FAN06G2905' => 'fan', 'FAN06G4325' => 'fan', 'FAN08G0033' => 'fan', 'FAN09G0642' => 'fan', 'FAN10G1763' => 'fan', 'FAN10G2026' => 'fan', 'FAN10G2513' => 'fan', 'FAN10G3402' => 'fan', 'FAN10G3564' => 'fan', 'FAN10G3987' => 'fan', 'FAN13G1490' => 'fan', 'FAN14G5857' => 'fan', 'FAN18G1188' => 'fan', 'FvH4_5g00750' => 'fve', 'FvH4_6g13410' => 'fve', 'FvH4_7g11740' => 'fve', 'FvH4_7g17410' => 'fve', 'FvH4_7g18860' => 'fve', 'Glyma.01G099100' => 'gma', 'Glyma.01G142300' => 'gma', 'Glyma.03G025500' => 'gma', 'Glyma.03G069700' => 'gma', 'Glyma.03G260000' => 'gma', 'Glyma.09G269800' => 'gma', 'Glyma.10G208700' => 'gma', 'Glyma.18G220400' => 'gma', 'Glyma.20G182000' => 'gma', 'Gohir.A01G221726' => 'ghi', 'Gohir.A07G134600' => 'ghi', 'Gohir.A07G146000' => 'ghi', 'Gohir.A08G173900' => 'ghi', 'Gohir.A09G194900' => 'ghi', 'Gohir.A10G204100' => 'ghi', 'Gohir.A11G080600' => 'ghi', 'Gohir.A11G327500' => 'ghi', 'Gohir.A12G101800' => 'ghi', 'Gohir.D01G211200' => 'ghi', 'Gohir.D07G139200' => 'ghi', 'Gohir.D07G152100' => 'ghi', 'Gohir.D08G192600' => 'ghi', 'Gohir.D09G189200' => 'ghi', 'Gohir.D10G212000' => 'ghi', 'Gohir.D11G085200' => 'ghi', 'Gohir.D11G346400' => 'ghi', 'Gohir.D12G104800' => 'ghi', 'Gorai.001G151300' => 'gra', 'Gorai.001G174100' => 'gra', 'Gorai.002G257000' => 'gra', 'Gorai.004G202600' => 'gra', 'Gorai.007G090900' => 'gra', 'Gorai.007G376700' => 'gra', 'Gorai.008G114100' => 'gra', 'Gorai.011G237900' => 'gra', 'GSVIVG01005450001' => 'vvi', 'GSVIVG01016232001' => 'vvi', 'GSVIVG01026157001' => 'vvi', 'GSVIVG01027419001' => 'vvi', 'GSVIVG01027631001' => 'vvi', 'GSVIVG01034143001' => 'vvi', 'HanXRQChr03g0093921' => 'han', 'HanXRQChr04g0120001' => 'han', 'HanXRQChr04g0122561' => 'han', 'HanXRQChr09g0246851' => 'han', 'HanXRQChr10g0293311' => 'han', 'HanXRQChr13g0425231' => 'han', 'HanXRQChr16g0532571' => 'han', 'Haze_09050' => 'cav', 'Haze_15715' => 'cav', 'Haze_15716' => 'cav', 'Haze_16803' => 'cav', 'Haze_16850' => 'cav', 'Hma1.2p1_0301F.1_g118655' => 'hma', 'Hma1.2p1_0309F.1_g120590' => 'hma', 'Hma1.2p1_0936F.1_g238900' => 'hma', 'Hma1.2p1_3552F.1_g336740' => 'hma', 'HPP92_003520' => 'vpl', 'HPP92_006628' => 'vpl', 'HPP92_006645' => 'vpl', 'HPP92_014669' => 'vpl', 'HPP92_015077' => 'vpl', 'Hund16742' => 'sun', 'Hund17022' => 'sun', 'Lalb_Chr02g0152131' => 'lal', 'Lalb_Chr05g0225371' => 'lal', 'Lalb_Chr07g0189841' => 'lal', 'Lalb_Chr07g0192961' => 'lal', 'Lalb_Chr12g0208221' => 'lal', 'Lalb_Chr13g0291211' => 'lal', 'Lalb_Chr13g0291781' => 'lal', 'Lalb_Chr18g0044651' => 'lal', 'Lalb_Chr21g0313731' => 'lal', 'Lj1g0022533' => 'lja', 'Lj2A18T50' => 'lonja', 'Lj2A92G93' => 'lonja', 'Lj3A965T73' => 'lonja', 'Lj3g0000673' => 'lja', 'Lj3g0002666' => 'lja', 'Lj4g0016985' => 'lja', 'Lj5g0003625' => 'lja', 'Lj7A529G36' => 'lonja', 'Lj9A569T49' => 'lonja', 'Lj9A604T63' => 'lonja', 'Lsat_1_v5_gn_3_132060' => 'lsa', 'Lsat_1_v5_gn_4_68941' => 'lsa', 'Lsat_1_v5_gn_5_95580' => 'lsa', 'Lsat_1_v5_gn_7_161' => 'lsa', 'Lsat_1_v5_gn_7_7041' => 'lsa', 'Lsat_1_v5_gn_9_33481' => 'lsa', 'Lsat_1_v5_gn_9_68260' => 'lsa', 'Manes.01G073100' => 'mes', 'Manes.01G266300' => 'mes', 'Manes.02G033300' => 'mes', 'Manes.05G017900' => 'mes', 'Manes.05G046100' => 'mes', 'Manes.08G080900' => 'mes', 'Manes.10G049400' => 'mes', 'Mapoly0009s0186' => 'mpo', 'Mapoly0036s0118' => 'mpo', 'Mapoly0101s0046' => 'mpo', 'MBI04_g30218_MAGBIO' => 'mbi', 'MBI04_g35564_MAGBIO' => 'mbi', 'MBI12_g34011_MAGBIO' => 'mbi', 'MBI14_g04655_MAGBIO' => 'mbi', 'MCO07G653' => 'mco', 'MCO10G173' => 'mco', 'MD01G1087100' => 'mdo', 'MD01G1104200' => 'mdo', 'MD02G1205100' => 'mdo', 'MD04G1079200' => 'mdo', 'MD04G1131400' => 'mdo', 'MD07G1121600' => 'mdo', 'MD07G1157300' => 'mdo', 'MD07G1171000' => 'mdo', 'MD12G1144500' => 'mdo', 'Medtr1g094610' => 'mtr', 'Medtr4g021795' => 'mtr', 'Medtr4g023760' => 'mtr', 'Medtr7g118050' => 'mtr', 'MELO3C005582.2' => 'cme', 'MELO3C005989.2' => 'cme', 'MELO3C006192.2' => 'cme', 'MELO3C009248.2' => 'cme', 'MELO3C019817.2' => 'cme', 'Migut.B01625' => 'egut', 'Migut.B01915' => 'egut', 'Migut.F01721' => 'egut', 'Migut.J00314' => 'egut', 'MSTRG.20742' => 'ama', 'MSTRG.8134' => 'ama', 'Nitab4.5_0000096g0010' => 'nta', 'Nitab4.5_0000202g0030' => 'nta', 'Nitab4.5_0000216g0370' => 'nta', 'Nitab4.5_0000457g0230' => 'nta', 'Nitab4.5_0001702g0170' => 'nta', 'Nitab4.5_0003607g0010' => 'nta', 'Nitab4.5_0004917g0020' => 'nta', 'Nitab4.5_0007059g0010' => 'nta', 'Nitab4.5_0007184g0010' => 'nta', 'Nitab4.5_0007346g0020' => 'nta', 'Nn1g00410' => 'nnu', 'Nn1g01252' => 'nnu', 'Nn2g11168' => 'nnu', 'Nn2g13403' => 'nnu', 'Nn2g13760' => 'nnu', 'Nn4g26380' => 'nnu', 'Oeu000806.2' => 'oeu', 'Oeu005788.1' => 'oeu', 'Oeu006900.3' => 'oeu', 'Oeu007797.1' => 'oeu', 'Oeu011932.1' => 'oeu', 'Oeu022739.1' => 'oeu', 'Oeu037918.1' => 'oeu', 'Oeu055490.2' => 'oeu', 'Os01g0844400' => 'osa', 'Os02g0819100' => 'osa', 'Os03g0804300' => 'osa', 'Os05g0458000' => 'osa', 'Os07g0467800' => 'osa', 'Os12g0602200' => 'osa', 'Peaxi162Scf00013g03444' => 'pax', 'Peaxi162Scf00094g01120' => 'pax', 'Peaxi162Scf00191g01211' => 'pax', 'Peaxi162Scf00238g01110' => 'pax', 'Peaxi162Scf00330g00719' => 'pax', 'Peaxi162Scf00627g00018' => 'pax', 'PGR031G2686' => 'pgr', 'PGR042G0809' => 'pgr', 'PGR142G0193' => 'pgr', 'PGSC0003DMG400011066' => 'stu', 'PGSC0003DMG400012041' => 'stu', 'PGSC0003DMG400013678' => 'stu', 'PGSC0003DMG400023477' => 'stu', 'PGSC0003DMG400025956' => 'stu', 'PGSC0003DMG401019151' => 'stu', 'Phvul.006G116400' => 'pvu', 'Phvul.007G097300' => 'pvu', 'Phvul.010G015000' => 'pvu', 'Phvul.010G083900' => 'pvu', 'Potri.001G117100' => 'ptr', 'Potri.002G147300' => 'ptr', 'Potri.003G115600' => 'ptr', 'Potri.006G087400' => 'ptr', 'Potri.010G226100' => 'ptr', 'Potri.014G069200' => 'ptr', 'Potri.014G104000' => 'ptr', 'Potri.016G100200' => 'ptr', 'Pp3c10_20450' => 'ppa', 'Pp3c1_42400' => 'ppa', 'Pp3c3_24390' => 'ppa', 'Pp3c3_2860' => 'ppa', 'PRCOL_00003193' => 'pco', 'Prupe.2G144500' => 'ppe', 'Prupe.2G195700' => 'ppe', 'Prupe.2G209800' => 'ppe', 'Prupe.5G080000' => 'ppe', 'Prupe.6G257900' => 'ppe', 'Psat3g001160' => 'psa', 'Psat6g181880' => 'psa', 'Psat7g233720' => 'psa', 'PSO063G7587' => 'pso', 'PSO339G2145' => 'pso', 'PSO339G3369' => 'pso', 'PSO478G2747' => 'pso', 'PSO513G0140' => 'pso', 'PSO782G1614' => 'pso', 'PSO782G4889' => 'pso', 'PSO782G5485' => 'pso', 'PSO801G0241' => 'pso', 'QL07p048854' => 'qlo', 'QL08p046745' => 'qlo', 'QL08p052606' => 'qlo', 'QL08p053414' => 'qlo', 'QL08p054868' => 'qlo', 'RcHm_v2.0_Chr1g0350251' => 'rch', 'RcHm_v2.0_Chr1g0360851' => 'rch', 'RcHm_v2.0_Chr1g0362791' => 'rch', 'RcHm_v2.0_Chr3g0466281' => 'rch', 'RcHm_v2.0_Chr7g0201481' => 'rch', 'Rhsim01G0148600' => 'rsi', 'Rhsim05G0194400' => 'rsi', 'Rhsim07G0000700' => 'rsi', 'Rhsim07G0000800' => 'rsi', 'Rhsim07G0027900' => 'rsi', 'Rhsim09G0149500' => 'rsi', 'RhsimUnG0186900' => 'rsi', 'Sabra01G0089900' => 'sbr', 'Sabra02G0114700' => 'sbr', 'Sabra02G0116300' => 'sbr', 'Sabra03G0080100' => 'sbr', 'Sabra08G0024300' => 'sbr', 'Sabra10G0174300' => 'sbr', 'Sabra14G0048900' => 'sbr', 'Sabra14G0076500' => 'sbr', 'SalBow5G2513' => 'sbo', 'Sc01g0002300' => 'sci', 'Sc01g0004450' => 'sci', 'Sc06g0001680' => 'sci', 'Sc23g0003580' => 'sci', 'Sed0000913' => 'sed', 'Sed0001655' => 'sed', 'Sed0007745' => 'sed', 'Sed0010951' => 'sed', 'Sed0017599' => 'sed', 'Sed0021405' => 'sed', 'Sed0022810' => 'sed', 'SEGI_07099' => 'sgi', 'SEGI_11931' => 'sgi', 'SEGI_13187' => 'sgi', 'SEGI_29958' => 'sgi', 'SEGI_36351' => 'sgi', 'SGA_v2.0_scaffold126G33770' => 'sas', 'SGA_v2.0_scaffold153G37003' => 'sas', 'SGA_v2.0_scaffold2G01359' => 'sas', 'SGA_v2.0_scaffold5G03064' => 'sas', 'SGA_v2.0_scaffold95G28903' => 'sas', 'SHI12701' => 'shi', 'SHI26410' => 'shi', 'SHI38997' => 'shi', 'SHI53759' => 'shi', 'SHI53886' => 'shi', 'SHI54714' => 'shi', 'SMO011G0041' => 'smo', 'SMO146G0251' => 'smo', 'SMO160G0004' => 'smo', 'SMO174G0057' => 'smo', 'SMO244G0089' => 'smo', 'SMO296G0011' => 'smo', 'Solyc01g091280.3' => 'sly', 'Solyc05g047610.3' => 'sly', 'Solyc05g047640.3' => 'sly', 'Solyc05g055630.3' => 'sly', 'Solyc10g018160.2' => 'sly', 'Solyc10g084820.2' => 'sly', 'Solyc10g086565.2' => 'sly', 'Sopen01g037030' => 'spe', 'Sopen05g027920' => 'spe', 'Sopen05g034070' => 'spe', 'Sopen10g007260' => 'spe', 'Sopen10g034260' => 'spe', 'Sopen10g035950' => 'spe', 'Sp3g07710' => 'spa', 'Sp4g27420' => 'spa', 'Sp5g02450' => 'spa', 'Sp6g01280' => 'spa', 'Sp6g38480' => 'spa', 'Sp7g20780' => 'spa', 'TAR374G1413' => 'tar', 'TAR623G1777' => 'tar', 'TAR629G2370' => 'tar', 'TAR633G1759' => 'tar', 'TAR636G3387' => 'tar', 'THA.LOC104802447' => 'tha', 'THA.LOC104813916' => 'tha', 'THA.LOC104816423' => 'tha', 'THA.LOC104817246' => 'tha', 'THA.LOC104825895' => 'tha', 'Thecc.01G335200' => 'tca', 'Thecc.01G377400' => 'tca', 'Thecc.03G262200' => 'tca', 'Thecc.05G036800' => 'tca', 'Thecc.10G080500' => 'tca', 'Thecc.10G080800' => 'tca', 'Thhalv10001560m.g' => 'esa', 'Thhalv10006120m.g' => 'esa', 'Thhalv10014375m.g' => 'esa', 'Thhalv10021264m.g' => 'esa', 'Thhalv10028856m.g' => 'esa', 'TPR.G1914' => 'tpr', 'TPR.G4757' => 'tpr', 'TPR.G5595' => 'tpr', 'TWI14G0952' => 'twi', 'TWI14G1307' => 'twi', 'TWI38G2143' => 'twi', 'TWI59G0826' => 'twi', 'TWI77G0527' => 'twi', 'TWI81G0150' => 'twi', 'unitig_21.g21018' => 'ugi', 'unitig_26.g9725' => 'ugi', 'unitig_744.g24653' => 'ugi', 'unitig_749.g13778' => 'ugi', 'unitig_899.g15035' => 'ugi', 'vmacro04296' => 'vma', 'vmacro04852' => 'vma', 'vmacro13404' => 'vma', 'vmacro20169' => 'vma', 'vmacro21014' => 'vma', 'VMungo0331G0237' => 'vmu', 'VMungo0331G0706' => 'vmu', 'VMungo0331G1361' => 'vmu', 'VMungo0331G1489' => 'vmu', 'VMungo0540G1037' => 'vmu', 'VMungo0720G2487' => 'vmu', 'VMungo0720G2721' => 'vmu', 'Zm00001eb086860' => 'zma', 'Zm00001eb104760' => 'zma', 'Zm00001eb148220' => 'zma', 'Zm00001eb259030' => 'zma', 'Zm00001eb289590' => 'zma', 'Zm00001eb420150' => 'zma' ), 'gf_id' => 'HOM05D000968', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000968' ), 'data_identifier' => 'HOM05D000968', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000968', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p31690' => 'bna', 'A03p36040' => 'bna', 'A03p53730' => 'bna', 'A04p01410' => 'bna', 'A05p05420' => 'bna', 'A05p39630' => 'bna', 'A05p39640' => 'bna', 'A09p00970' => 'bna', 'A09p53060' => 'bna', 'A10p31890' => 'bna', 'Aa31LG10G15040' => 'aar', 'Aa31LG1G21090' => 'aar', 'Aa31LG1G26900' => 'aar', 'Aa31LG3G1820' => 'aar', 'Aa31LG5G1100' => 'aar', 'Aa31LG6G4740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2265' => 'aag', 'Actinidia07998' => 'ach', 'Actinidia11266' => 'ach', 'Actinidia12682' => 'ach', 'Actinidia26479' => 'ach', 'Actinidia31406' => 'ach', 'Actinidia32437' => 'ach', 'Actinidia38862' => 'ach', 'Ah.05g174230' => 'amhyb', 'Ah.05g179070' => 'amhyb', 'Ah.05g179090' => 'amhyb', 'Ah.12g059950' => 'amhyb', 'AL3G20480' => 'aly', 'AL4G44520' => 'aly', 'AL5G43110' => 'aly', 'AL6G13890' => 'aly', 'AL6G52620' => 'aly', 'AL7G30830' => 'aly', 'Aqoxy1G00899' => 'aox', 'Aqoxy5G04333' => 'aox', 'Aqoxy7G00641' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3IZ0NN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4EF6AW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W9P8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79GA3M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C43NQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFCU6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G95YVJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCHK29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LU1UG8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX91RN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGB4B1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8DA0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9H7JI' => 'arhy', 'AT3G09320' => 'ath', 'AT3G60800' => 'ath', 'AT4G00840' => 'ath', 'AT4G22750' => 'ath', 'AT5G04270' => 'ath', 'ATR0090G003' => 'atr', 'ATR0559G349' => 'atr', 'ATR0680G261' => 'atr', 'ATR0810G048' => 'atr', 'Atru.chr12.831' => 'acertr', 'Atru.chr5.303' => 'acertr', 'Atru.chr5.748' => 'acertr', 'Atru.chr8.1999' => 'acertr', 'Atru.chr9.1436' => 'acertr', 'AUR62004211' => 'cqu', 'AUR62004548' => 'cqu', 'AUR62013637' => 'cqu', 'AUR62022662' => 'cqu', 'AUR62025777' => 'cqu', 'AUR62042386' => 'cqu', 'BcaB01g02310' => 'bca', 'BcaB01g06062' => 'bca', 'BcaB02g08975' => 'bca', 'BcaB02g08980' => 'bca', 'BcaC01g04228' => 'bca', 'BcaC01g06830' => 'bca', 'BcaC02g10186' => 'bca', 'BcaC02g12214' => 'bca', 'BcaC04g24101' => 'bca', 'BcaC05g29520' => 'bca', 'BcaC05g29661' => 'bca', 'BcaC06g32130' => 'bca', 'BcaC06g32131' => 'bca', 'BcaC07g40601' => 'bca', 'BcaC07g42641' => 'bca', 'BcaNung01038' => 'bca', 'BcaNung01676' => 'bca', 'BcaNung02480' => 'bca', 'BcaNung07376' => 'bca', 'BolC3t16146H' => 'bol', 'BolC3t16637H' => 'bol', 'BolC4t22257H' => 'bol', 'BolC4t24728H' => 'bol', 'BolC5t34517H' => 'bol', 'BolC7t45703H' => 'bol', 'BolC8t51166H' => 'bol', 'BolC9t53038H' => 'bol', 'BolC9t60000H' => 'bol', 'BraA01t01345Z' => 'bra', 'BraA01t01346Z' => 'bra', 'BraA01t01348Z' => 'bra', 'BraA03t12347Z' => 'bra', 'BraA03t12775Z' => 'bra', 'BraA03t14439Z' => 'bra', 'BraA04t15860Z' => 'bra', 'BraA05t19511Z' => 'bra', 'BraA05t22746Z' => 'bra', 'BraA09t35767Z' => 'bra', 'BraA09t40732Z' => 'bra', 'BraA10t45233Z' => 'bra', 'C03p38720' => 'bna', 'C03p43680' => 'bna', 'C04p06350' => 'bna', 'C04p31800' => 'bna', 'C05p58680' => 'bna', 'C07p52110' => 'bna', 'C08p35760' => 'bna', 'C09p01050' => 'bna', 'C09p72600' => 'bna', 'CAN.G106.2' => 'can', 'CAN.G1482.1' => 'can', 'CAN.G324.12' => 'can', 'CAN.G388.20' => 'can', 'CAN.G412.7' => 'can', 'CAN.G694.32' => 'can', 'CAN.G92.12' => 'can', 'CANSAT11G2353' => 'cansat', 'CANSAT21G1398' => 'cansat', 'CANSAT56G2456' => 'cansat', 'CANSAT56G3031' => 'cansat', 'CANSAT56G4539' => 'cansat', 'CARHR083680' => 'chi', 'CARHR171190' => 'chi', 'CARHR209010' => 'chi', 'CARHR229680' => 'chi', 'CARHR249490' => 'chi', 'Carub.0003s0844' => 'cru', 'Carub.0005s2755' => 'cru', 'Carub.0006s0322' => 'cru', 'Carub.0006s3586' => 'cru', 'Carub.0007s1855' => 'cru', 'Ca_07808_v3' => 'car', 'Ca_09535_v3' => 'car', 'Ca_10548_v3' => 'car', 'Ca_19913_v3' => 'car', 'Ca_19916_v3' => 'car', 'Ca_19975_v3' => 'car', 'CBR_g22876' => 'cbr', 'CBR_g22879' => 'cbr', 'CBR_g38491' => 'cbr', 'CBR_g54185' => 'cbr', 'CBR_g54190' => 'cbr', 'Cc02_g11020' => 'ccan', 'Cc02_g23920' => 'ccan', 'Cc02_g39860' => 'ccan', 'Cc02_g39870' => 'ccan', 'Cc03_g06760' => 'ccan', 'Cc06_g02450' => 'ccan', 'Cc09_g09450' => 'ccan', 'CDE02G1959' => 'cde', 'CDE04G0600' => 'cde', 'CDE07G1996' => 'cde', 'CDE07G2078' => 'cde', 'CDE11G0611' => 'cde', 'Cfa001683' => 'cfa', 'Cfa001734' => 'cfa', 'Cfa001737' => 'cfa', 'Cfa003751' => 'cfa', 'Cfa012019' => 'cfa', 'Cfa017353' => 'cfa', 'Cfa017732' => 'cfa', 'Cfa022464' => 'cfa', 'Ciclev10012400m.g' => 'ccl', 'Ciclev10021242m.g' => 'ccl', 'Ciclev10021302m.g' => 'ccl', 'Ciclev10021463m.g' => 'ccl', 'Ciclev10032359m.g' => 'ccl', 'CiPaw.01G081000' => 'cil', 'CiPaw.01G262500' => 'cil', 'CiPaw.01G269800' => 'cil', 'CiPaw.02G168400' => 'cil', 'CiPaw.05G119500' => 'cil', 'CiPaw.11G147300' => 'cil', 'ClCG01G003630' => 'cla', 'ClCG05G000510' => 'cla', 'ClCG05G002300' => 'cla', 'ClCG08G007650' => 'cla', 'ClCG10G021250' => 'cla', 'COL.COLO4_06218' => 'col', 'COL.COLO4_12538' => 'col', 'COL.COLO4_14775' => 'col', 'COL.COLO4_23875' => 'col', 'Cpa.g.sc141.16' => 'cpa', 'Cpa.g.sc169.16' => 'cpa', 'Cpa.g.sc244.4' => 'cpa', 'Cpa.g.sc244.5' => 'cpa', 'Cpa.g.sc29.87' => 'cpa', 'Cpa.g.sc53.115' => 'cpa', 'Cre03.g207502' => 'cre', 'Cre06.g277000' => 'cre', 'Cre09.g394050' => 'cre', 'CsaV3_3G007680' => 'csa', 'CsaV3_3G009710' => 'csa', 'CsaV3_3G034790' => 'csa', 'CsaV3_5G003750' => 'csa', 'CsaV3_6G036620' => 'csa', 'CSS0002288' => 'camsi', 'CSS0011250' => 'camsi', 'CSS0021619' => 'camsi', 'CSS0046701' => 'camsi', 'DCAR_006420' => 'dca', 'DCAR_006865' => 'dca', 'DCAR_008558' => 'dca', 'DCAR_028754' => 'dca', 'DCAR_028755' => 'dca', 'Dinv31218' => 'din', 'Dinv32371' => 'din', 'Dinv34250' => 'din', 'Dinv37156' => 'din', 'Dinv43704' => 'din', 'Duzib093G1811' => 'dzi', 'Duzib106G1622' => 'dzi', 'Duzib114G0504' => 'dzi', 'Duzib128G0338' => 'dzi', 'Duzib128G1577' => 'dzi', 'Duzib133G0104' => 'dzi', 'Duzib133G1080' => 'dzi', 'Duzib138G0324' => 'dzi', 'Duzib138G0394' => 'dzi', 'Duzib205G0122' => 'dzi', 'Duzib268G1020' => 'dzi', 'Duzib268G1359' => 'dzi', 'ECA232G3929' => 'eca', 'ECA236G2210' => 'eca', 'ECA236G2287' => 'eca', 'ECA240G4568' => 'eca', 'ECA247G0894' => 'eca', 'EL10Ac1g00200' => 'bvu', 'EL10Ac1g00886' => 'bvu', 'EL10As1g23091' => 'bvu', 'EL10As1g23092' => 'bvu', 'Eucgr.A01284' => 'egr', 'Eucgr.A01285' => 'egr', 'Eucgr.D02456' => 'egr', 'Eucgr.E00018' => 'egr', 'Eucgr.E01439' => 'egr', 'Eucgr.G02859' => 'egr', 'FAN01G0168' => 'fan', 'FAN01G0453' => 'fan', 'FAN01G2761' => 'fan', 'FAN02G1239' => 'fan', 'FAN03G0645' => 'fan', 'FAN03G2707' => 'fan', 'FAN03G2978' => 'fan', 'FAN04G0227' => 'fan', 'FAN06G0091' => 'fan', 'FAN06G1418' => 'fan', 'FAN06G1512' => 'fan', 'FAN06G1986' => 'fan', 'FAN06G2905' => 'fan', 'FAN06G4325' => 'fan', 'FAN08G0033' => 'fan', 'FAN09G0642' => 'fan', 'FAN10G1763' => 'fan', 'FAN10G2026' => 'fan', 'FAN10G2513' => 'fan', 'FAN10G3402' => 'fan', 'FAN10G3564' => 'fan', 'FAN10G3987' => 'fan', 'FAN13G1490' => 'fan', 'FAN14G5857' => 'fan', 'FAN18G1188' => 'fan', 'FvH4_5g00750' => 'fve', 'FvH4_6g13410' => 'fve', 'FvH4_7g11740' => 'fve', 'FvH4_7g17410' => 'fve', 'FvH4_7g18860' => 'fve', 'Glyma.01G099100' => 'gma', 'Glyma.01G142300' => 'gma', 'Glyma.03G025500' => 'gma', 'Glyma.03G069700' => 'gma', 'Glyma.03G260000' => 'gma', 'Glyma.09G269800' => 'gma', 'Glyma.10G208700' => 'gma', 'Glyma.18G220400' => 'gma', 'Glyma.20G182000' => 'gma', 'Gohir.A01G221726' => 'ghi', 'Gohir.A07G134600' => 'ghi', 'Gohir.A07G146000' => 'ghi', 'Gohir.A08G173900' => 'ghi', 'Gohir.A09G194900' => 'ghi', 'Gohir.A10G204100' => 'ghi', 'Gohir.A11G080600' => 'ghi', 'Gohir.A11G327500' => 'ghi', 'Gohir.A12G101800' => 'ghi', 'Gohir.D01G211200' => 'ghi', 'Gohir.D07G139200' => 'ghi', 'Gohir.D07G152100' => 'ghi', 'Gohir.D08G192600' => 'ghi', 'Gohir.D09G189200' => 'ghi', 'Gohir.D10G212000' => 'ghi', 'Gohir.D11G085200' => 'ghi', 'Gohir.D11G346400' => 'ghi', 'Gohir.D12G104800' => 'ghi', 'Gorai.001G151300' => 'gra', 'Gorai.001G174100' => 'gra', 'Gorai.002G257000' => 'gra', 'Gorai.004G202600' => 'gra', 'Gorai.007G090900' => 'gra', 'Gorai.007G376700' => 'gra', 'Gorai.008G114100' => 'gra', 'Gorai.011G237900' => 'gra', 'GSVIVG01005450001' => 'vvi', 'GSVIVG01016232001' => 'vvi', 'GSVIVG01026157001' => 'vvi', 'GSVIVG01027419001' => 'vvi', 'GSVIVG01027631001' => 'vvi', 'GSVIVG01034143001' => 'vvi', 'HanXRQChr03g0093921' => 'han', 'HanXRQChr04g0120001' => 'han', 'HanXRQChr04g0122561' => 'han', 'HanXRQChr09g0246851' => 'han', 'HanXRQChr10g0293311' => 'han', 'HanXRQChr13g0425231' => 'han', 'HanXRQChr16g0532571' => 'han', 'Haze_09050' => 'cav', 'Haze_15715' => 'cav', 'Haze_15716' => 'cav', 'Haze_16803' => 'cav', 'Haze_16850' => 'cav', 'Hma1.2p1_0301F.1_g118655' => 'hma', 'Hma1.2p1_0309F.1_g120590' => 'hma', 'Hma1.2p1_0936F.1_g238900' => 'hma', 'Hma1.2p1_3552F.1_g336740' => 'hma', 'HPP92_003520' => 'vpl', 'HPP92_006628' => 'vpl', 'HPP92_006645' => 'vpl', 'HPP92_014669' => 'vpl', 'HPP92_015077' => 'vpl', 'Hund16742' => 'sun', 'Hund17022' => 'sun', 'Lalb_Chr02g0152131' => 'lal', 'Lalb_Chr05g0225371' => 'lal', 'Lalb_Chr07g0189841' => 'lal', 'Lalb_Chr07g0192961' => 'lal', 'Lalb_Chr12g0208221' => 'lal', 'Lalb_Chr13g0291211' => 'lal', 'Lalb_Chr13g0291781' => 'lal', 'Lalb_Chr18g0044651' => 'lal', 'Lalb_Chr21g0313731' => 'lal', 'Lj1g0022533' => 'lja', 'Lj2A18T50' => 'lonja', 'Lj2A92G93' => 'lonja', 'Lj3A965T73' => 'lonja', 'Lj3g0000673' => 'lja', 'Lj3g0002666' => 'lja', 'Lj4g0016985' => 'lja', 'Lj5g0003625' => 'lja', 'Lj7A529G36' => 'lonja', 'Lj9A569T49' => 'lonja', 'Lj9A604T63' => 'lonja', 'Lsat_1_v5_gn_3_132060' => 'lsa', 'Lsat_1_v5_gn_4_68941' => 'lsa', 'Lsat_1_v5_gn_5_95580' => 'lsa', 'Lsat_1_v5_gn_7_161' => 'lsa', 'Lsat_1_v5_gn_7_7041' => 'lsa', 'Lsat_1_v5_gn_9_33481' => 'lsa', 'Lsat_1_v5_gn_9_68260' => 'lsa', 'Manes.01G073100' => 'mes', 'Manes.01G266300' => 'mes', 'Manes.02G033300' => 'mes', 'Manes.05G017900' => 'mes', 'Manes.05G046100' => 'mes', 'Manes.08G080900' => 'mes', 'Manes.10G049400' => 'mes', 'Mapoly0009s0186' => 'mpo', 'Mapoly0036s0118' => 'mpo', 'Mapoly0101s0046' => 'mpo', 'MBI04_g30218_MAGBIO' => 'mbi', 'MBI04_g35564_MAGBIO' => 'mbi', 'MBI12_g34011_MAGBIO' => 'mbi', 'MBI14_g04655_MAGBIO' => 'mbi', 'MCO07G653' => 'mco', 'MCO10G173' => 'mco', 'MD01G1087100' => 'mdo', 'MD01G1104200' => 'mdo', 'MD02G1205100' => 'mdo', 'MD04G1079200' => 'mdo', 'MD04G1131400' => 'mdo', 'MD07G1121600' => 'mdo', 'MD07G1157300' => 'mdo', 'MD07G1171000' => 'mdo', 'MD12G1144500' => 'mdo', 'Medtr1g094610' => 'mtr', 'Medtr4g021795' => 'mtr', 'Medtr4g023760' => 'mtr', 'Medtr7g118050' => 'mtr', 'MELO3C005582.2' => 'cme', 'MELO3C005989.2' => 'cme', 'MELO3C006192.2' => 'cme', 'MELO3C009248.2' => 'cme', 'MELO3C019817.2' => 'cme', 'Migut.B01625' => 'egut', 'Migut.B01915' => 'egut', 'Migut.F01721' => 'egut', 'Migut.J00314' => 'egut', 'MSTRG.20742' => 'ama', 'MSTRG.8134' => 'ama', 'Nitab4.5_0000096g0010' => 'nta', 'Nitab4.5_0000202g0030' => 'nta', 'Nitab4.5_0000216g0370' => 'nta', 'Nitab4.5_0000457g0230' => 'nta', 'Nitab4.5_0001702g0170' => 'nta', 'Nitab4.5_0003607g0010' => 'nta', 'Nitab4.5_0004917g0020' => 'nta', 'Nitab4.5_0007059g0010' => 'nta', 'Nitab4.5_0007184g0010' => 'nta', 'Nitab4.5_0007346g0020' => 'nta', 'Nn1g00410' => 'nnu', 'Nn1g01252' => 'nnu', 'Nn2g11168' => 'nnu', 'Nn2g13403' => 'nnu', 'Nn2g13760' => 'nnu', 'Nn4g26380' => 'nnu', 'Oeu000806.2' => 'oeu', 'Oeu005788.1' => 'oeu', 'Oeu006900.3' => 'oeu', 'Oeu007797.1' => 'oeu', 'Oeu011932.1' => 'oeu', 'Oeu022739.1' => 'oeu', 'Oeu037918.1' => 'oeu', 'Oeu055490.2' => 'oeu', 'Os01g0844400' => 'osa', 'Os02g0819100' => 'osa', 'Os03g0804300' => 'osa', 'Os05g0458000' => 'osa', 'Os07g0467800' => 'osa', 'Os12g0602200' => 'osa', 'Peaxi162Scf00013g03444' => 'pax', 'Peaxi162Scf00094g01120' => 'pax', 'Peaxi162Scf00191g01211' => 'pax', 'Peaxi162Scf00238g01110' => 'pax', 'Peaxi162Scf00330g00719' => 'pax', 'Peaxi162Scf00627g00018' => 'pax', 'PGR031G2686' => 'pgr', 'PGR042G0809' => 'pgr', 'PGR142G0193' => 'pgr', 'PGSC0003DMG400011066' => 'stu', 'PGSC0003DMG400012041' => 'stu', 'PGSC0003DMG400013678' => 'stu', 'PGSC0003DMG400023477' => 'stu', 'PGSC0003DMG400025956' => 'stu', 'PGSC0003DMG401019151' => 'stu', 'Phvul.006G116400' => 'pvu', 'Phvul.007G097300' => 'pvu', 'Phvul.010G015000' => 'pvu', 'Phvul.010G083900' => 'pvu', 'Potri.001G117100' => 'ptr', 'Potri.002G147300' => 'ptr', 'Potri.003G115600' => 'ptr', 'Potri.006G087400' => 'ptr', 'Potri.010G226100' => 'ptr', 'Potri.014G069200' => 'ptr', 'Potri.014G104000' => 'ptr', 'Potri.016G100200' => 'ptr', 'Pp3c10_20450' => 'ppa', 'Pp3c1_42400' => 'ppa', 'Pp3c3_24390' => 'ppa', 'Pp3c3_2860' => 'ppa', 'PRCOL_00003193' => 'pco', 'Prupe.2G144500' => 'ppe', 'Prupe.2G195700' => 'ppe', 'Prupe.2G209800' => 'ppe', 'Prupe.5G080000' => 'ppe', 'Prupe.6G257900' => 'ppe', 'Psat3g001160' => 'psa', 'Psat6g181880' => 'psa', 'Psat7g233720' => 'psa', 'PSO063G7587' => 'pso', 'PSO339G2145' => 'pso', 'PSO339G3369' => 'pso', 'PSO478G2747' => 'pso', 'PSO513G0140' => 'pso', 'PSO782G1614' => 'pso', 'PSO782G4889' => 'pso', 'PSO782G5485' => 'pso', 'PSO801G0241' => 'pso', 'QL07p048854' => 'qlo', 'QL08p046745' => 'qlo', 'QL08p052606' => 'qlo', 'QL08p053414' => 'qlo', 'QL08p054868' => 'qlo', 'RcHm_v2.0_Chr1g0350251' => 'rch', 'RcHm_v2.0_Chr1g0360851' => 'rch', 'RcHm_v2.0_Chr1g0362791' => 'rch', 'RcHm_v2.0_Chr3g0466281' => 'rch', 'RcHm_v2.0_Chr7g0201481' => 'rch', 'Rhsim01G0148600' => 'rsi', 'Rhsim05G0194400' => 'rsi', 'Rhsim07G0000700' => 'rsi', 'Rhsim07G0000800' => 'rsi', 'Rhsim07G0027900' => 'rsi', 'Rhsim09G0149500' => 'rsi', 'RhsimUnG0186900' => 'rsi', 'Sabra01G0089900' => 'sbr', 'Sabra02G0114700' => 'sbr', 'Sabra02G0116300' => 'sbr', 'Sabra03G0080100' => 'sbr', 'Sabra08G0024300' => 'sbr', 'Sabra10G0174300' => 'sbr', 'Sabra14G0048900' => 'sbr', 'Sabra14G0076500' => 'sbr', 'SalBow5G2513' => 'sbo', 'Sc01g0002300' => 'sci', 'Sc01g0004450' => 'sci', 'Sc06g0001680' => 'sci', 'Sc23g0003580' => 'sci', 'Sed0000913' => 'sed', 'Sed0001655' => 'sed', 'Sed0007745' => 'sed', 'Sed0010951' => 'sed', 'Sed0017599' => 'sed', 'Sed0021405' => 'sed', 'Sed0022810' => 'sed', 'SEGI_07099' => 'sgi', 'SEGI_11931' => 'sgi', 'SEGI_13187' => 'sgi', 'SEGI_29958' => 'sgi', 'SEGI_36351' => 'sgi', 'SGA_v2.0_scaffold126G33770' => 'sas', 'SGA_v2.0_scaffold153G37003' => 'sas', 'SGA_v2.0_scaffold2G01359' => 'sas', 'SGA_v2.0_scaffold5G03064' => 'sas', 'SGA_v2.0_scaffold95G28903' => 'sas', 'SHI12701' => 'shi', 'SHI26410' => 'shi', 'SHI38997' => 'shi', 'SHI53759' => 'shi', 'SHI53886' => 'shi', 'SHI54714' => 'shi', 'SMO011G0041' => 'smo', 'SMO146G0251' => 'smo', 'SMO160G0004' => 'smo', 'SMO174G0057' => 'smo', 'SMO244G0089' => 'smo', 'SMO296G0011' => 'smo', 'Solyc01g091280.3' => 'sly', 'Solyc05g047610.3' => 'sly', 'Solyc05g047640.3' => 'sly', 'Solyc05g055630.3' => 'sly', 'Solyc10g018160.2' => 'sly', 'Solyc10g084820.2' => 'sly', 'Solyc10g086565.2' => 'sly', 'Sopen01g037030' => 'spe', 'Sopen05g027920' => 'spe', 'Sopen05g034070' => 'spe', 'Sopen10g007260' => 'spe', 'Sopen10g034260' => 'spe', 'Sopen10g035950' => 'spe', 'Sp3g07710' => 'spa', 'Sp4g27420' => 'spa', 'Sp5g02450' => 'spa', 'Sp6g01280' => 'spa', 'Sp6g38480' => 'spa', 'Sp7g20780' => 'spa', 'TAR374G1413' => 'tar', 'TAR623G1777' => 'tar', 'TAR629G2370' => 'tar', 'TAR633G1759' => 'tar', 'TAR636G3387' => 'tar', 'THA.LOC104802447' => 'tha', 'THA.LOC104813916' => 'tha', 'THA.LOC104816423' => 'tha', 'THA.LOC104817246' => 'tha', 'THA.LOC104825895' => 'tha', 'Thecc.01G335200' => 'tca', 'Thecc.01G377400' => 'tca', 'Thecc.03G262200' => 'tca', 'Thecc.05G036800' => 'tca', 'Thecc.10G080500' => 'tca', 'Thecc.10G080800' => 'tca', 'Thhalv10001560m.g' => 'esa', 'Thhalv10006120m.g' => 'esa', 'Thhalv10014375m.g' => 'esa', 'Thhalv10021264m.g' => 'esa', 'Thhalv10028856m.g' => 'esa', 'TPR.G1914' => 'tpr', 'TPR.G4757' => 'tpr', 'TPR.G5595' => 'tpr', 'TWI14G0952' => 'twi', 'TWI14G1307' => 'twi', 'TWI38G2143' => 'twi', 'TWI59G0826' => 'twi', 'TWI77G0527' => 'twi', 'TWI81G0150' => 'twi', 'unitig_21.g21018' => 'ugi', 'unitig_26.g9725' => 'ugi', 'unitig_744.g24653' => 'ugi', 'unitig_749.g13778' => 'ugi', 'unitig_899.g15035' => 'ugi', 'vmacro04296' => 'vma', 'vmacro04852' => 'vma', 'vmacro13404' => 'vma', 'vmacro20169' => 'vma', 'vmacro21014' => 'vma', 'VMungo0331G0237' => 'vmu', 'VMungo0331G0706' => 'vmu', 'VMungo0331G1361' => 'vmu', 'VMungo0331G1489' => 'vmu', 'VMungo0540G1037' => 'vmu', 'VMungo0720G2487' => 'vmu', 'VMungo0720G2721' => 'vmu', 'Zm00001eb086860' => 'zma', 'Zm00001eb104760' => 'zma', 'Zm00001eb148220' => 'zma', 'Zm00001eb259030' => 'zma', 'Zm00001eb289590' => 'zma', 'Zm00001eb420150' => 'zma' ) $gf_id = 'HOM05D000968' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000968' ) $data_identifier = 'HOM05D000968' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 19, 'bol' => (int) 9, 'bra' => (int) 12, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 5, 'ccan' => (int) 7, 'cde' => (int) 5, 'cfa' => (int) 8, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 4, 'dca' => (int) 5, 'din' => (int) 5, 'dzi' => (int) 12, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 25, 'fve' => (int) 5, 'gma' => (int) 9, 'ghi' => (int) 18, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 7, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 5, 'sun' => (int) 2, 'lal' => (int) 9, 'lja' => (int) 5, 'lonja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 9, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 2, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 3, 'stu' => (int) 6, 'pvu' => (int) 4, 'ptr' => (int) 8, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 3, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 1, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 5, 'sas' => (int) 5, 'shi' => (int) 6, 'smo' => (int) 6, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 3, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420150' $species_info = array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ) $local_species = 'mpo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000968', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p31690' => 'bna', 'A03p36040' => 'bna', 'A03p53730' => 'bna', 'A04p01410' => 'bna', 'A05p05420' => 'bna', 'A05p39630' => 'bna', 'A05p39640' => 'bna', 'A09p00970' => 'bna', 'A09p53060' => 'bna', 'A10p31890' => 'bna', 'Aa31LG10G15040' => 'aar', 'Aa31LG1G21090' => 'aar', 'Aa31LG1G26900' => 'aar', 'Aa31LG3G1820' => 'aar', 'Aa31LG5G1100' => 'aar', 'Aa31LG6G4740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2265' => 'aag', 'Actinidia07998' => 'ach', 'Actinidia11266' => 'ach', 'Actinidia12682' => 'ach', 'Actinidia26479' => 'ach', 'Actinidia31406' => 'ach', 'Actinidia32437' => 'ach', 'Actinidia38862' => 'ach', 'Ah.05g174230' => 'amhyb', 'Ah.05g179070' => 'amhyb', 'Ah.05g179090' => 'amhyb', 'Ah.12g059950' => 'amhyb', 'AL3G20480' => 'aly', 'AL4G44520' => 'aly', 'AL5G43110' => 'aly', 'AL6G13890' => 'aly', 'AL6G52620' => 'aly', 'AL7G30830' => 'aly', 'Aqoxy1G00899' => 'aox', 'Aqoxy5G04333' => 'aox', 'Aqoxy7G00641' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3IZ0NN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4EF6AW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W9P8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79GA3M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C43NQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFCU6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G95YVJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCHK29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LU1UG8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX91RN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGB4B1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8DA0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9H7JI' => 'arhy', 'AT3G09320' => 'ath', 'AT3G60800' => 'ath', 'AT4G00840' => 'ath', 'AT4G22750' => 'ath', 'AT5G04270' => 'ath', 'ATR0090G003' => 'atr', 'ATR0559G349' => 'atr', 'ATR0680G261' => 'atr', 'ATR0810G048' => 'atr', 'Atru.chr12.831' => 'acertr', 'Atru.chr5.303' => 'acertr', 'Atru.chr5.748' => 'acertr', 'Atru.chr8.1999' => 'acertr', 'Atru.chr9.1436' => 'acertr', 'AUR62004211' => 'cqu', 'AUR62004548' => 'cqu', 'AUR62013637' => 'cqu', 'AUR62022662' => 'cqu', 'AUR62025777' => 'cqu', 'AUR62042386' => 'cqu', 'BcaB01g02310' => 'bca', 'BcaB01g06062' => 'bca', 'BcaB02g08975' => 'bca', 'BcaB02g08980' => 'bca', 'BcaC01g04228' => 'bca', 'BcaC01g06830' => 'bca', 'BcaC02g10186' => 'bca', 'BcaC02g12214' => 'bca', 'BcaC04g24101' => 'bca', 'BcaC05g29520' => 'bca', 'BcaC05g29661' => 'bca', 'BcaC06g32130' => 'bca', 'BcaC06g32131' => 'bca', 'BcaC07g40601' => 'bca', 'BcaC07g42641' => 'bca', 'BcaNung01038' => 'bca', 'BcaNung01676' => 'bca', 'BcaNung02480' => 'bca', 'BcaNung07376' => 'bca', 'BolC3t16146H' => 'bol', 'BolC3t16637H' => 'bol', 'BolC4t22257H' => 'bol', 'BolC4t24728H' => 'bol', 'BolC5t34517H' => 'bol', 'BolC7t45703H' => 'bol', 'BolC8t51166H' => 'bol', 'BolC9t53038H' => 'bol', 'BolC9t60000H' => 'bol', 'BraA01t01345Z' => 'bra', 'BraA01t01346Z' => 'bra', 'BraA01t01348Z' => 'bra', 'BraA03t12347Z' => 'bra', 'BraA03t12775Z' => 'bra', 'BraA03t14439Z' => 'bra', 'BraA04t15860Z' => 'bra', 'BraA05t19511Z' => 'bra', 'BraA05t22746Z' => 'bra', 'BraA09t35767Z' => 'bra', 'BraA09t40732Z' => 'bra', 'BraA10t45233Z' => 'bra', 'C03p38720' => 'bna', 'C03p43680' => 'bna', 'C04p06350' => 'bna', 'C04p31800' => 'bna', 'C05p58680' => 'bna', 'C07p52110' => 'bna', 'C08p35760' => 'bna', 'C09p01050' => 'bna', 'C09p72600' => 'bna', 'CAN.G106.2' => 'can', 'CAN.G1482.1' => 'can', 'CAN.G324.12' => 'can', 'CAN.G388.20' => 'can', 'CAN.G412.7' => 'can', 'CAN.G694.32' => 'can', 'CAN.G92.12' => 'can', 'CANSAT11G2353' => 'cansat', 'CANSAT21G1398' => 'cansat', 'CANSAT56G2456' => 'cansat', 'CANSAT56G3031' => 'cansat', 'CANSAT56G4539' => 'cansat', 'CARHR083680' => 'chi', 'CARHR171190' => 'chi', 'CARHR209010' => 'chi', 'CARHR229680' => 'chi', 'CARHR249490' => 'chi', 'Carub.0003s0844' => 'cru', 'Carub.0005s2755' => 'cru', 'Carub.0006s0322' => 'cru', 'Carub.0006s3586' => 'cru', 'Carub.0007s1855' => 'cru', 'Ca_07808_v3' => 'car', 'Ca_09535_v3' => 'car', 'Ca_10548_v3' => 'car', 'Ca_19913_v3' => 'car', 'Ca_19916_v3' => 'car', 'Ca_19975_v3' => 'car', 'CBR_g22876' => 'cbr', 'CBR_g22879' => 'cbr', 'CBR_g38491' => 'cbr', 'CBR_g54185' => 'cbr', 'CBR_g54190' => 'cbr', 'Cc02_g11020' => 'ccan', 'Cc02_g23920' => 'ccan', 'Cc02_g39860' => 'ccan', 'Cc02_g39870' => 'ccan', 'Cc03_g06760' => 'ccan', 'Cc06_g02450' => 'ccan', 'Cc09_g09450' => 'ccan', 'CDE02G1959' => 'cde', 'CDE04G0600' => 'cde', 'CDE07G1996' => 'cde', 'CDE07G2078' => 'cde', 'CDE11G0611' => 'cde', 'Cfa001683' => 'cfa', 'Cfa001734' => 'cfa', 'Cfa001737' => 'cfa', 'Cfa003751' => 'cfa', 'Cfa012019' => 'cfa', 'Cfa017353' => 'cfa', 'Cfa017732' => 'cfa', 'Cfa022464' => 'cfa', 'Ciclev10012400m.g' => 'ccl', 'Ciclev10021242m.g' => 'ccl', 'Ciclev10021302m.g' => 'ccl', 'Ciclev10021463m.g' => 'ccl', 'Ciclev10032359m.g' => 'ccl', 'CiPaw.01G081000' => 'cil', 'CiPaw.01G262500' => 'cil', 'CiPaw.01G269800' => 'cil', 'CiPaw.02G168400' => 'cil', 'CiPaw.05G119500' => 'cil', 'CiPaw.11G147300' => 'cil', 'ClCG01G003630' => 'cla', 'ClCG05G000510' => 'cla', 'ClCG05G002300' => 'cla', 'ClCG08G007650' => 'cla', 'ClCG10G021250' => 'cla', 'COL.COLO4_06218' => 'col', 'COL.COLO4_12538' => 'col', 'COL.COLO4_14775' => 'col', 'COL.COLO4_23875' => 'col', 'Cpa.g.sc141.16' => 'cpa', 'Cpa.g.sc169.16' => 'cpa', 'Cpa.g.sc244.4' => 'cpa', 'Cpa.g.sc244.5' => 'cpa', 'Cpa.g.sc29.87' => 'cpa', 'Cpa.g.sc53.115' => 'cpa', 'Cre03.g207502' => 'cre', 'Cre06.g277000' => 'cre', 'Cre09.g394050' => 'cre', 'CsaV3_3G007680' => 'csa', 'CsaV3_3G009710' => 'csa', 'CsaV3_3G034790' => 'csa', 'CsaV3_5G003750' => 'csa', 'CsaV3_6G036620' => 'csa', 'CSS0002288' => 'camsi', 'CSS0011250' => 'camsi', 'CSS0021619' => 'camsi', 'CSS0046701' => 'camsi', 'DCAR_006420' => 'dca', 'DCAR_006865' => 'dca', 'DCAR_008558' => 'dca', 'DCAR_028754' => 'dca', 'DCAR_028755' => 'dca', 'Dinv31218' => 'din', 'Dinv32371' => 'din', 'Dinv34250' => 'din', 'Dinv37156' => 'din', 'Dinv43704' => 'din', 'Duzib093G1811' => 'dzi', 'Duzib106G1622' => 'dzi', 'Duzib114G0504' => 'dzi', 'Duzib128G0338' => 'dzi', 'Duzib128G1577' => 'dzi', 'Duzib133G0104' => 'dzi', 'Duzib133G1080' => 'dzi', 'Duzib138G0324' => 'dzi', 'Duzib138G0394' => 'dzi', 'Duzib205G0122' => 'dzi', 'Duzib268G1020' => 'dzi', 'Duzib268G1359' => 'dzi', 'ECA232G3929' => 'eca', 'ECA236G2210' => 'eca', 'ECA236G2287' => 'eca', 'ECA240G4568' => 'eca', 'ECA247G0894' => 'eca', 'EL10Ac1g00200' => 'bvu', 'EL10Ac1g00886' => 'bvu', 'EL10As1g23091' => 'bvu', 'EL10As1g23092' => 'bvu', 'Eucgr.A01284' => 'egr', 'Eucgr.A01285' => 'egr', 'Eucgr.D02456' => 'egr', 'Eucgr.E00018' => 'egr', 'Eucgr.E01439' => 'egr', 'Eucgr.G02859' => 'egr', 'FAN01G0168' => 'fan', 'FAN01G0453' => 'fan', 'FAN01G2761' => 'fan', 'FAN02G1239' => 'fan', 'FAN03G0645' => 'fan', 'FAN03G2707' => 'fan', 'FAN03G2978' => 'fan', 'FAN04G0227' => 'fan', 'FAN06G0091' => 'fan', 'FAN06G1418' => 'fan', 'FAN06G1512' => 'fan', 'FAN06G1986' => 'fan', 'FAN06G2905' => 'fan', 'FAN06G4325' => 'fan', 'FAN08G0033' => 'fan', 'FAN09G0642' => 'fan', 'FAN10G1763' => 'fan', 'FAN10G2026' => 'fan', 'FAN10G2513' => 'fan', 'FAN10G3402' => 'fan', 'FAN10G3564' => 'fan', 'FAN10G3987' => 'fan', 'FAN13G1490' => 'fan', 'FAN14G5857' => 'fan', 'FAN18G1188' => 'fan', 'FvH4_5g00750' => 'fve', 'FvH4_6g13410' => 'fve', 'FvH4_7g11740' => 'fve', 'FvH4_7g17410' => 'fve', 'FvH4_7g18860' => 'fve', 'Glyma.01G099100' => 'gma', 'Glyma.01G142300' => 'gma', 'Glyma.03G025500' => 'gma', 'Glyma.03G069700' => 'gma', 'Glyma.03G260000' => 'gma', 'Glyma.09G269800' => 'gma', 'Glyma.10G208700' => 'gma', 'Glyma.18G220400' => 'gma', 'Glyma.20G182000' => 'gma', 'Gohir.A01G221726' => 'ghi', 'Gohir.A07G134600' => 'ghi', 'Gohir.A07G146000' => 'ghi', 'Gohir.A08G173900' => 'ghi', 'Gohir.A09G194900' => 'ghi', 'Gohir.A10G204100' => 'ghi', 'Gohir.A11G080600' => 'ghi', 'Gohir.A11G327500' => 'ghi', 'Gohir.A12G101800' => 'ghi', 'Gohir.D01G211200' => 'ghi', 'Gohir.D07G139200' => 'ghi', 'Gohir.D07G152100' => 'ghi', 'Gohir.D08G192600' => 'ghi', 'Gohir.D09G189200' => 'ghi', 'Gohir.D10G212000' => 'ghi', 'Gohir.D11G085200' => 'ghi', 'Gohir.D11G346400' => 'ghi', 'Gohir.D12G104800' => 'ghi', 'Gorai.001G151300' => 'gra', 'Gorai.001G174100' => 'gra', 'Gorai.002G257000' => 'gra', 'Gorai.004G202600' => 'gra', 'Gorai.007G090900' => 'gra', 'Gorai.007G376700' => 'gra', 'Gorai.008G114100' => 'gra', 'Gorai.011G237900' => 'gra', 'GSVIVG01005450001' => 'vvi', 'GSVIVG01016232001' => 'vvi', 'GSVIVG01026157001' => 'vvi', 'GSVIVG01027419001' => 'vvi', 'GSVIVG01027631001' => 'vvi', 'GSVIVG01034143001' => 'vvi', 'HanXRQChr03g0093921' => 'han', 'HanXRQChr04g0120001' => 'han', 'HanXRQChr04g0122561' => 'han', 'HanXRQChr09g0246851' => 'han', 'HanXRQChr10g0293311' => 'han', 'HanXRQChr13g0425231' => 'han', 'HanXRQChr16g0532571' => 'han', 'Haze_09050' => 'cav', 'Haze_15715' => 'cav', 'Haze_15716' => 'cav', 'Haze_16803' => 'cav', 'Haze_16850' => 'cav', 'Hma1.2p1_0301F.1_g118655' => 'hma', 'Hma1.2p1_0309F.1_g120590' => 'hma', 'Hma1.2p1_0936F.1_g238900' => 'hma', 'Hma1.2p1_3552F.1_g336740' => 'hma', 'HPP92_003520' => 'vpl', 'HPP92_006628' => 'vpl', 'HPP92_006645' => 'vpl', 'HPP92_014669' => 'vpl', 'HPP92_015077' => 'vpl', 'Hund16742' => 'sun', 'Hund17022' => 'sun', 'Lalb_Chr02g0152131' => 'lal', 'Lalb_Chr05g0225371' => 'lal', 'Lalb_Chr07g0189841' => 'lal', 'Lalb_Chr07g0192961' => 'lal', 'Lalb_Chr12g0208221' => 'lal', 'Lalb_Chr13g0291211' => 'lal', 'Lalb_Chr13g0291781' => 'lal', 'Lalb_Chr18g0044651' => 'lal', 'Lalb_Chr21g0313731' => 'lal', 'Lj1g0022533' => 'lja', 'Lj2A18T50' => 'lonja', 'Lj2A92G93' => 'lonja', 'Lj3A965T73' => 'lonja', 'Lj3g0000673' => 'lja', 'Lj3g0002666' => 'lja', 'Lj4g0016985' => 'lja', 'Lj5g0003625' => 'lja', 'Lj7A529G36' => 'lonja', 'Lj9A569T49' => 'lonja', 'Lj9A604T63' => 'lonja', 'Lsat_1_v5_gn_3_132060' => 'lsa', 'Lsat_1_v5_gn_4_68941' => 'lsa', 'Lsat_1_v5_gn_5_95580' => 'lsa', 'Lsat_1_v5_gn_7_161' => 'lsa', 'Lsat_1_v5_gn_7_7041' => 'lsa', 'Lsat_1_v5_gn_9_33481' => 'lsa', 'Lsat_1_v5_gn_9_68260' => 'lsa', 'Manes.01G073100' => 'mes', 'Manes.01G266300' => 'mes', 'Manes.02G033300' => 'mes', 'Manes.05G017900' => 'mes', 'Manes.05G046100' => 'mes', 'Manes.08G080900' => 'mes', 'Manes.10G049400' => 'mes', 'Mapoly0009s0186' => 'mpo', 'Mapoly0036s0118' => 'mpo', 'Mapoly0101s0046' => 'mpo', 'MBI04_g30218_MAGBIO' => 'mbi', 'MBI04_g35564_MAGBIO' => 'mbi', 'MBI12_g34011_MAGBIO' => 'mbi', 'MBI14_g04655_MAGBIO' => 'mbi', 'MCO07G653' => 'mco', 'MCO10G173' => 'mco', 'MD01G1087100' => 'mdo', 'MD01G1104200' => 'mdo', 'MD02G1205100' => 'mdo', 'MD04G1079200' => 'mdo', 'MD04G1131400' => 'mdo', 'MD07G1121600' => 'mdo', 'MD07G1157300' => 'mdo', 'MD07G1171000' => 'mdo', 'MD12G1144500' => 'mdo', 'Medtr1g094610' => 'mtr', 'Medtr4g021795' => 'mtr', 'Medtr4g023760' => 'mtr', 'Medtr7g118050' => 'mtr', 'MELO3C005582.2' => 'cme', 'MELO3C005989.2' => 'cme', 'MELO3C006192.2' => 'cme', 'MELO3C009248.2' => 'cme', 'MELO3C019817.2' => 'cme', 'Migut.B01625' => 'egut', 'Migut.B01915' => 'egut', 'Migut.F01721' => 'egut', 'Migut.J00314' => 'egut', 'MSTRG.20742' => 'ama', 'MSTRG.8134' => 'ama', 'Nitab4.5_0000096g0010' => 'nta', 'Nitab4.5_0000202g0030' => 'nta', 'Nitab4.5_0000216g0370' => 'nta', 'Nitab4.5_0000457g0230' => 'nta', 'Nitab4.5_0001702g0170' => 'nta', 'Nitab4.5_0003607g0010' => 'nta', 'Nitab4.5_0004917g0020' => 'nta', 'Nitab4.5_0007059g0010' => 'nta', 'Nitab4.5_0007184g0010' => 'nta', 'Nitab4.5_0007346g0020' => 'nta', 'Nn1g00410' => 'nnu', 'Nn1g01252' => 'nnu', 'Nn2g11168' => 'nnu', 'Nn2g13403' => 'nnu', 'Nn2g13760' => 'nnu', 'Nn4g26380' => 'nnu', 'Oeu000806.2' => 'oeu', 'Oeu005788.1' => 'oeu', 'Oeu006900.3' => 'oeu', 'Oeu007797.1' => 'oeu', 'Oeu011932.1' => 'oeu', 'Oeu022739.1' => 'oeu', 'Oeu037918.1' => 'oeu', 'Oeu055490.2' => 'oeu', 'Os01g0844400' => 'osa', 'Os02g0819100' => 'osa', 'Os03g0804300' => 'osa', 'Os05g0458000' => 'osa', 'Os07g0467800' => 'osa', 'Os12g0602200' => 'osa', 'Peaxi162Scf00013g03444' => 'pax', 'Peaxi162Scf00094g01120' => 'pax', 'Peaxi162Scf00191g01211' => 'pax', 'Peaxi162Scf00238g01110' => 'pax', 'Peaxi162Scf00330g00719' => 'pax', 'Peaxi162Scf00627g00018' => 'pax', 'PGR031G2686' => 'pgr', 'PGR042G0809' => 'pgr', 'PGR142G0193' => 'pgr', 'PGSC0003DMG400011066' => 'stu', 'PGSC0003DMG400012041' => 'stu', 'PGSC0003DMG400013678' => 'stu', 'PGSC0003DMG400023477' => 'stu', 'PGSC0003DMG400025956' => 'stu', 'PGSC0003DMG401019151' => 'stu', 'Phvul.006G116400' => 'pvu', 'Phvul.007G097300' => 'pvu', 'Phvul.010G015000' => 'pvu', 'Phvul.010G083900' => 'pvu', 'Potri.001G117100' => 'ptr', 'Potri.002G147300' => 'ptr', 'Potri.003G115600' => 'ptr', 'Potri.006G087400' => 'ptr', 'Potri.010G226100' => 'ptr', 'Potri.014G069200' => 'ptr', 'Potri.014G104000' => 'ptr', 'Potri.016G100200' => 'ptr', 'Pp3c10_20450' => 'ppa', 'Pp3c1_42400' => 'ppa', 'Pp3c3_24390' => 'ppa', 'Pp3c3_2860' => 'ppa', 'PRCOL_00003193' => 'pco', 'Prupe.2G144500' => 'ppe', 'Prupe.2G195700' => 'ppe', 'Prupe.2G209800' => 'ppe', 'Prupe.5G080000' => 'ppe', 'Prupe.6G257900' => 'ppe', 'Psat3g001160' => 'psa', 'Psat6g181880' => 'psa', 'Psat7g233720' => 'psa', 'PSO063G7587' => 'pso', 'PSO339G2145' => 'pso', 'PSO339G3369' => 'pso', 'PSO478G2747' => 'pso', 'PSO513G0140' => 'pso', 'PSO782G1614' => 'pso', 'PSO782G4889' => 'pso', 'PSO782G5485' => 'pso', 'PSO801G0241' => 'pso', 'QL07p048854' => 'qlo', 'QL08p046745' => 'qlo', 'QL08p052606' => 'qlo', 'QL08p053414' => 'qlo', 'QL08p054868' => 'qlo', 'RcHm_v2.0_Chr1g0350251' => 'rch', 'RcHm_v2.0_Chr1g0360851' => 'rch', 'RcHm_v2.0_Chr1g0362791' => 'rch', 'RcHm_v2.0_Chr3g0466281' => 'rch', 'RcHm_v2.0_Chr7g0201481' => 'rch', 'Rhsim01G0148600' => 'rsi', 'Rhsim05G0194400' => 'rsi', 'Rhsim07G0000700' => 'rsi', 'Rhsim07G0000800' => 'rsi', 'Rhsim07G0027900' => 'rsi', 'Rhsim09G0149500' => 'rsi', 'RhsimUnG0186900' => 'rsi', 'Sabra01G0089900' => 'sbr', 'Sabra02G0114700' => 'sbr', 'Sabra02G0116300' => 'sbr', 'Sabra03G0080100' => 'sbr', 'Sabra08G0024300' => 'sbr', 'Sabra10G0174300' => 'sbr', 'Sabra14G0048900' => 'sbr', 'Sabra14G0076500' => 'sbr', 'SalBow5G2513' => 'sbo', 'Sc01g0002300' => 'sci', 'Sc01g0004450' => 'sci', 'Sc06g0001680' => 'sci', 'Sc23g0003580' => 'sci', 'Sed0000913' => 'sed', 'Sed0001655' => 'sed', 'Sed0007745' => 'sed', 'Sed0010951' => 'sed', 'Sed0017599' => 'sed', 'Sed0021405' => 'sed', 'Sed0022810' => 'sed', 'SEGI_07099' => 'sgi', 'SEGI_11931' => 'sgi', 'SEGI_13187' => 'sgi', 'SEGI_29958' => 'sgi', 'SEGI_36351' => 'sgi', 'SGA_v2.0_scaffold126G33770' => 'sas', 'SGA_v2.0_scaffold153G37003' => 'sas', 'SGA_v2.0_scaffold2G01359' => 'sas', 'SGA_v2.0_scaffold5G03064' => 'sas', 'SGA_v2.0_scaffold95G28903' => 'sas', 'SHI12701' => 'shi', 'SHI26410' => 'shi', 'SHI38997' => 'shi', 'SHI53759' => 'shi', 'SHI53886' => 'shi', 'SHI54714' => 'shi', 'SMO011G0041' => 'smo', 'SMO146G0251' => 'smo', 'SMO160G0004' => 'smo', 'SMO174G0057' => 'smo', 'SMO244G0089' => 'smo', 'SMO296G0011' => 'smo', 'Solyc01g091280.3' => 'sly', 'Solyc05g047610.3' => 'sly', 'Solyc05g047640.3' => 'sly', 'Solyc05g055630.3' => 'sly', 'Solyc10g018160.2' => 'sly', 'Solyc10g084820.2' => 'sly', 'Solyc10g086565.2' => 'sly', 'Sopen01g037030' => 'spe', 'Sopen05g027920' => 'spe', 'Sopen05g034070' => 'spe', 'Sopen10g007260' => 'spe', 'Sopen10g034260' => 'spe', 'Sopen10g035950' => 'spe', 'Sp3g07710' => 'spa', 'Sp4g27420' => 'spa', 'Sp5g02450' => 'spa', 'Sp6g01280' => 'spa', 'Sp6g38480' => 'spa', 'Sp7g20780' => 'spa', 'TAR374G1413' => 'tar', 'TAR623G1777' => 'tar', 'TAR629G2370' => 'tar', 'TAR633G1759' => 'tar', 'TAR636G3387' => 'tar', 'THA.LOC104802447' => 'tha', 'THA.LOC104813916' => 'tha', 'THA.LOC104816423' => 'tha', 'THA.LOC104817246' => 'tha', 'THA.LOC104825895' => 'tha', 'Thecc.01G335200' => 'tca', 'Thecc.01G377400' => 'tca', 'Thecc.03G262200' => 'tca', 'Thecc.05G036800' => 'tca', 'Thecc.10G080500' => 'tca', 'Thecc.10G080800' => 'tca', 'Thhalv10001560m.g' => 'esa', 'Thhalv10006120m.g' => 'esa', 'Thhalv10014375m.g' => 'esa', 'Thhalv10021264m.g' => 'esa', 'Thhalv10028856m.g' => 'esa', 'TPR.G1914' => 'tpr', 'TPR.G4757' => 'tpr', 'TPR.G5595' => 'tpr', 'TWI14G0952' => 'twi', 'TWI14G1307' => 'twi', 'TWI38G2143' => 'twi', 'TWI59G0826' => 'twi', 'TWI77G0527' => 'twi', 'TWI81G0150' => 'twi', 'unitig_21.g21018' => 'ugi', 'unitig_26.g9725' => 'ugi', 'unitig_744.g24653' => 'ugi', 'unitig_749.g13778' => 'ugi', 'unitig_899.g15035' => 'ugi', 'vmacro04296' => 'vma', 'vmacro04852' => 'vma', 'vmacro13404' => 'vma', 'vmacro20169' => 'vma', 'vmacro21014' => 'vma', 'VMungo0331G0237' => 'vmu', 'VMungo0331G0706' => 'vmu', 'VMungo0331G1361' => 'vmu', 'VMungo0331G1489' => 'vmu', 'VMungo0540G1037' => 'vmu', 'VMungo0720G2487' => 'vmu', 'VMungo0720G2721' => 'vmu', 'Zm00001eb086860' => 'zma', 'Zm00001eb104760' => 'zma', 'Zm00001eb148220' => 'zma', 'Zm00001eb259030' => 'zma', 'Zm00001eb289590' => 'zma', 'Zm00001eb420150' => 'zma' ), 'gf_id' => 'HOM05D000968', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000968' ), 'data_identifier' => 'HOM05D000968', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000968', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p31690' => 'bna', 'A03p36040' => 'bna', 'A03p53730' => 'bna', 'A04p01410' => 'bna', 'A05p05420' => 'bna', 'A05p39630' => 'bna', 'A05p39640' => 'bna', 'A09p00970' => 'bna', 'A09p53060' => 'bna', 'A10p31890' => 'bna', 'Aa31LG10G15040' => 'aar', 'Aa31LG1G21090' => 'aar', 'Aa31LG1G26900' => 'aar', 'Aa31LG3G1820' => 'aar', 'Aa31LG5G1100' => 'aar', 'Aa31LG6G4740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2265' => 'aag', 'Actinidia07998' => 'ach', 'Actinidia11266' => 'ach', 'Actinidia12682' => 'ach', 'Actinidia26479' => 'ach', 'Actinidia31406' => 'ach', 'Actinidia32437' => 'ach', 'Actinidia38862' => 'ach', 'Ah.05g174230' => 'amhyb', 'Ah.05g179070' => 'amhyb', 'Ah.05g179090' => 'amhyb', 'Ah.12g059950' => 'amhyb', 'AL3G20480' => 'aly', 'AL4G44520' => 'aly', 'AL5G43110' => 'aly', 'AL6G13890' => 'aly', 'AL6G52620' => 'aly', 'AL7G30830' => 'aly', 'Aqoxy1G00899' => 'aox', 'Aqoxy5G04333' => 'aox', 'Aqoxy7G00641' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3IZ0NN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4EF6AW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W9P8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79GA3M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C43NQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFCU6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G95YVJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCHK29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LU1UG8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX91RN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGB4B1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8DA0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9H7JI' => 'arhy', 'AT3G09320' => 'ath', 'AT3G60800' => 'ath', 'AT4G00840' => 'ath', 'AT4G22750' => 'ath', 'AT5G04270' => 'ath', 'ATR0090G003' => 'atr', 'ATR0559G349' => 'atr', 'ATR0680G261' => 'atr', 'ATR0810G048' => 'atr', 'Atru.chr12.831' => 'acertr', 'Atru.chr5.303' => 'acertr', 'Atru.chr5.748' => 'acertr', 'Atru.chr8.1999' => 'acertr', 'Atru.chr9.1436' => 'acertr', 'AUR62004211' => 'cqu', 'AUR62004548' => 'cqu', 'AUR62013637' => 'cqu', 'AUR62022662' => 'cqu', 'AUR62025777' => 'cqu', 'AUR62042386' => 'cqu', 'BcaB01g02310' => 'bca', 'BcaB01g06062' => 'bca', 'BcaB02g08975' => 'bca', 'BcaB02g08980' => 'bca', 'BcaC01g04228' => 'bca', 'BcaC01g06830' => 'bca', 'BcaC02g10186' => 'bca', 'BcaC02g12214' => 'bca', 'BcaC04g24101' => 'bca', 'BcaC05g29520' => 'bca', 'BcaC05g29661' => 'bca', 'BcaC06g32130' => 'bca', 'BcaC06g32131' => 'bca', 'BcaC07g40601' => 'bca', 'BcaC07g42641' => 'bca', 'BcaNung01038' => 'bca', 'BcaNung01676' => 'bca', 'BcaNung02480' => 'bca', 'BcaNung07376' => 'bca', 'BolC3t16146H' => 'bol', 'BolC3t16637H' => 'bol', 'BolC4t22257H' => 'bol', 'BolC4t24728H' => 'bol', 'BolC5t34517H' => 'bol', 'BolC7t45703H' => 'bol', 'BolC8t51166H' => 'bol', 'BolC9t53038H' => 'bol', 'BolC9t60000H' => 'bol', 'BraA01t01345Z' => 'bra', 'BraA01t01346Z' => 'bra', 'BraA01t01348Z' => 'bra', 'BraA03t12347Z' => 'bra', 'BraA03t12775Z' => 'bra', 'BraA03t14439Z' => 'bra', 'BraA04t15860Z' => 'bra', 'BraA05t19511Z' => 'bra', 'BraA05t22746Z' => 'bra', 'BraA09t35767Z' => 'bra', 'BraA09t40732Z' => 'bra', 'BraA10t45233Z' => 'bra', 'C03p38720' => 'bna', 'C03p43680' => 'bna', 'C04p06350' => 'bna', 'C04p31800' => 'bna', 'C05p58680' => 'bna', 'C07p52110' => 'bna', 'C08p35760' => 'bna', 'C09p01050' => 'bna', 'C09p72600' => 'bna', 'CAN.G106.2' => 'can', 'CAN.G1482.1' => 'can', 'CAN.G324.12' => 'can', 'CAN.G388.20' => 'can', 'CAN.G412.7' => 'can', 'CAN.G694.32' => 'can', 'CAN.G92.12' => 'can', 'CANSAT11G2353' => 'cansat', 'CANSAT21G1398' => 'cansat', 'CANSAT56G2456' => 'cansat', 'CANSAT56G3031' => 'cansat', 'CANSAT56G4539' => 'cansat', 'CARHR083680' => 'chi', 'CARHR171190' => 'chi', 'CARHR209010' => 'chi', 'CARHR229680' => 'chi', 'CARHR249490' => 'chi', 'Carub.0003s0844' => 'cru', 'Carub.0005s2755' => 'cru', 'Carub.0006s0322' => 'cru', 'Carub.0006s3586' => 'cru', 'Carub.0007s1855' => 'cru', 'Ca_07808_v3' => 'car', 'Ca_09535_v3' => 'car', 'Ca_10548_v3' => 'car', 'Ca_19913_v3' => 'car', 'Ca_19916_v3' => 'car', 'Ca_19975_v3' => 'car', 'CBR_g22876' => 'cbr', 'CBR_g22879' => 'cbr', 'CBR_g38491' => 'cbr', 'CBR_g54185' => 'cbr', 'CBR_g54190' => 'cbr', 'Cc02_g11020' => 'ccan', 'Cc02_g23920' => 'ccan', 'Cc02_g39860' => 'ccan', 'Cc02_g39870' => 'ccan', 'Cc03_g06760' => 'ccan', 'Cc06_g02450' => 'ccan', 'Cc09_g09450' => 'ccan', 'CDE02G1959' => 'cde', 'CDE04G0600' => 'cde', 'CDE07G1996' => 'cde', 'CDE07G2078' => 'cde', 'CDE11G0611' => 'cde', 'Cfa001683' => 'cfa', 'Cfa001734' => 'cfa', 'Cfa001737' => 'cfa', 'Cfa003751' => 'cfa', 'Cfa012019' => 'cfa', 'Cfa017353' => 'cfa', 'Cfa017732' => 'cfa', 'Cfa022464' => 'cfa', 'Ciclev10012400m.g' => 'ccl', 'Ciclev10021242m.g' => 'ccl', 'Ciclev10021302m.g' => 'ccl', 'Ciclev10021463m.g' => 'ccl', 'Ciclev10032359m.g' => 'ccl', 'CiPaw.01G081000' => 'cil', 'CiPaw.01G262500' => 'cil', 'CiPaw.01G269800' => 'cil', 'CiPaw.02G168400' => 'cil', 'CiPaw.05G119500' => 'cil', 'CiPaw.11G147300' => 'cil', 'ClCG01G003630' => 'cla', 'ClCG05G000510' => 'cla', 'ClCG05G002300' => 'cla', 'ClCG08G007650' => 'cla', 'ClCG10G021250' => 'cla', 'COL.COLO4_06218' => 'col', 'COL.COLO4_12538' => 'col', 'COL.COLO4_14775' => 'col', 'COL.COLO4_23875' => 'col', 'Cpa.g.sc141.16' => 'cpa', 'Cpa.g.sc169.16' => 'cpa', 'Cpa.g.sc244.4' => 'cpa', 'Cpa.g.sc244.5' => 'cpa', 'Cpa.g.sc29.87' => 'cpa', 'Cpa.g.sc53.115' => 'cpa', 'Cre03.g207502' => 'cre', 'Cre06.g277000' => 'cre', 'Cre09.g394050' => 'cre', 'CsaV3_3G007680' => 'csa', 'CsaV3_3G009710' => 'csa', 'CsaV3_3G034790' => 'csa', 'CsaV3_5G003750' => 'csa', 'CsaV3_6G036620' => 'csa', 'CSS0002288' => 'camsi', 'CSS0011250' => 'camsi', 'CSS0021619' => 'camsi', 'CSS0046701' => 'camsi', 'DCAR_006420' => 'dca', 'DCAR_006865' => 'dca', 'DCAR_008558' => 'dca', 'DCAR_028754' => 'dca', 'DCAR_028755' => 'dca', 'Dinv31218' => 'din', 'Dinv32371' => 'din', 'Dinv34250' => 'din', 'Dinv37156' => 'din', 'Dinv43704' => 'din', 'Duzib093G1811' => 'dzi', 'Duzib106G1622' => 'dzi', 'Duzib114G0504' => 'dzi', 'Duzib128G0338' => 'dzi', 'Duzib128G1577' => 'dzi', 'Duzib133G0104' => 'dzi', 'Duzib133G1080' => 'dzi', 'Duzib138G0324' => 'dzi', 'Duzib138G0394' => 'dzi', 'Duzib205G0122' => 'dzi', 'Duzib268G1020' => 'dzi', 'Duzib268G1359' => 'dzi', 'ECA232G3929' => 'eca', 'ECA236G2210' => 'eca', 'ECA236G2287' => 'eca', 'ECA240G4568' => 'eca', 'ECA247G0894' => 'eca', 'EL10Ac1g00200' => 'bvu', 'EL10Ac1g00886' => 'bvu', 'EL10As1g23091' => 'bvu', 'EL10As1g23092' => 'bvu', 'Eucgr.A01284' => 'egr', 'Eucgr.A01285' => 'egr', 'Eucgr.D02456' => 'egr', 'Eucgr.E00018' => 'egr', 'Eucgr.E01439' => 'egr', 'Eucgr.G02859' => 'egr', 'FAN01G0168' => 'fan', 'FAN01G0453' => 'fan', 'FAN01G2761' => 'fan', 'FAN02G1239' => 'fan', 'FAN03G0645' => 'fan', 'FAN03G2707' => 'fan', 'FAN03G2978' => 'fan', 'FAN04G0227' => 'fan', 'FAN06G0091' => 'fan', 'FAN06G1418' => 'fan', 'FAN06G1512' => 'fan', 'FAN06G1986' => 'fan', 'FAN06G2905' => 'fan', 'FAN06G4325' => 'fan', 'FAN08G0033' => 'fan', 'FAN09G0642' => 'fan', 'FAN10G1763' => 'fan', 'FAN10G2026' => 'fan', 'FAN10G2513' => 'fan', 'FAN10G3402' => 'fan', 'FAN10G3564' => 'fan', 'FAN10G3987' => 'fan', 'FAN13G1490' => 'fan', 'FAN14G5857' => 'fan', 'FAN18G1188' => 'fan', 'FvH4_5g00750' => 'fve', 'FvH4_6g13410' => 'fve', 'FvH4_7g11740' => 'fve', 'FvH4_7g17410' => 'fve', 'FvH4_7g18860' => 'fve', 'Glyma.01G099100' => 'gma', 'Glyma.01G142300' => 'gma', 'Glyma.03G025500' => 'gma', 'Glyma.03G069700' => 'gma', 'Glyma.03G260000' => 'gma', 'Glyma.09G269800' => 'gma', 'Glyma.10G208700' => 'gma', 'Glyma.18G220400' => 'gma', 'Glyma.20G182000' => 'gma', 'Gohir.A01G221726' => 'ghi', 'Gohir.A07G134600' => 'ghi', 'Gohir.A07G146000' => 'ghi', 'Gohir.A08G173900' => 'ghi', 'Gohir.A09G194900' => 'ghi', 'Gohir.A10G204100' => 'ghi', 'Gohir.A11G080600' => 'ghi', 'Gohir.A11G327500' => 'ghi', 'Gohir.A12G101800' => 'ghi', 'Gohir.D01G211200' => 'ghi', 'Gohir.D07G139200' => 'ghi', 'Gohir.D07G152100' => 'ghi', 'Gohir.D08G192600' => 'ghi', 'Gohir.D09G189200' => 'ghi', 'Gohir.D10G212000' => 'ghi', 'Gohir.D11G085200' => 'ghi', 'Gohir.D11G346400' => 'ghi', 'Gohir.D12G104800' => 'ghi', 'Gorai.001G151300' => 'gra', 'Gorai.001G174100' => 'gra', 'Gorai.002G257000' => 'gra', 'Gorai.004G202600' => 'gra', 'Gorai.007G090900' => 'gra', 'Gorai.007G376700' => 'gra', 'Gorai.008G114100' => 'gra', 'Gorai.011G237900' => 'gra', 'GSVIVG01005450001' => 'vvi', 'GSVIVG01016232001' => 'vvi', 'GSVIVG01026157001' => 'vvi', 'GSVIVG01027419001' => 'vvi', 'GSVIVG01027631001' => 'vvi', 'GSVIVG01034143001' => 'vvi', 'HanXRQChr03g0093921' => 'han', 'HanXRQChr04g0120001' => 'han', 'HanXRQChr04g0122561' => 'han', 'HanXRQChr09g0246851' => 'han', 'HanXRQChr10g0293311' => 'han', 'HanXRQChr13g0425231' => 'han', 'HanXRQChr16g0532571' => 'han', 'Haze_09050' => 'cav', 'Haze_15715' => 'cav', 'Haze_15716' => 'cav', 'Haze_16803' => 'cav', 'Haze_16850' => 'cav', 'Hma1.2p1_0301F.1_g118655' => 'hma', 'Hma1.2p1_0309F.1_g120590' => 'hma', 'Hma1.2p1_0936F.1_g238900' => 'hma', 'Hma1.2p1_3552F.1_g336740' => 'hma', 'HPP92_003520' => 'vpl', 'HPP92_006628' => 'vpl', 'HPP92_006645' => 'vpl', 'HPP92_014669' => 'vpl', 'HPP92_015077' => 'vpl', 'Hund16742' => 'sun', 'Hund17022' => 'sun', 'Lalb_Chr02g0152131' => 'lal', 'Lalb_Chr05g0225371' => 'lal', 'Lalb_Chr07g0189841' => 'lal', 'Lalb_Chr07g0192961' => 'lal', 'Lalb_Chr12g0208221' => 'lal', 'Lalb_Chr13g0291211' => 'lal', 'Lalb_Chr13g0291781' => 'lal', 'Lalb_Chr18g0044651' => 'lal', 'Lalb_Chr21g0313731' => 'lal', 'Lj1g0022533' => 'lja', 'Lj2A18T50' => 'lonja', 'Lj2A92G93' => 'lonja', 'Lj3A965T73' => 'lonja', 'Lj3g0000673' => 'lja', 'Lj3g0002666' => 'lja', 'Lj4g0016985' => 'lja', 'Lj5g0003625' => 'lja', 'Lj7A529G36' => 'lonja', 'Lj9A569T49' => 'lonja', 'Lj9A604T63' => 'lonja', 'Lsat_1_v5_gn_3_132060' => 'lsa', 'Lsat_1_v5_gn_4_68941' => 'lsa', 'Lsat_1_v5_gn_5_95580' => 'lsa', 'Lsat_1_v5_gn_7_161' => 'lsa', 'Lsat_1_v5_gn_7_7041' => 'lsa', 'Lsat_1_v5_gn_9_33481' => 'lsa', 'Lsat_1_v5_gn_9_68260' => 'lsa', 'Manes.01G073100' => 'mes', 'Manes.01G266300' => 'mes', 'Manes.02G033300' => 'mes', 'Manes.05G017900' => 'mes', 'Manes.05G046100' => 'mes', 'Manes.08G080900' => 'mes', 'Manes.10G049400' => 'mes', 'Mapoly0009s0186' => 'mpo', 'Mapoly0036s0118' => 'mpo', 'Mapoly0101s0046' => 'mpo', 'MBI04_g30218_MAGBIO' => 'mbi', 'MBI04_g35564_MAGBIO' => 'mbi', 'MBI12_g34011_MAGBIO' => 'mbi', 'MBI14_g04655_MAGBIO' => 'mbi', 'MCO07G653' => 'mco', 'MCO10G173' => 'mco', 'MD01G1087100' => 'mdo', 'MD01G1104200' => 'mdo', 'MD02G1205100' => 'mdo', 'MD04G1079200' => 'mdo', 'MD04G1131400' => 'mdo', 'MD07G1121600' => 'mdo', 'MD07G1157300' => 'mdo', 'MD07G1171000' => 'mdo', 'MD12G1144500' => 'mdo', 'Medtr1g094610' => 'mtr', 'Medtr4g021795' => 'mtr', 'Medtr4g023760' => 'mtr', 'Medtr7g118050' => 'mtr', 'MELO3C005582.2' => 'cme', 'MELO3C005989.2' => 'cme', 'MELO3C006192.2' => 'cme', 'MELO3C009248.2' => 'cme', 'MELO3C019817.2' => 'cme', 'Migut.B01625' => 'egut', 'Migut.B01915' => 'egut', 'Migut.F01721' => 'egut', 'Migut.J00314' => 'egut', 'MSTRG.20742' => 'ama', 'MSTRG.8134' => 'ama', 'Nitab4.5_0000096g0010' => 'nta', 'Nitab4.5_0000202g0030' => 'nta', 'Nitab4.5_0000216g0370' => 'nta', 'Nitab4.5_0000457g0230' => 'nta', 'Nitab4.5_0001702g0170' => 'nta', 'Nitab4.5_0003607g0010' => 'nta', 'Nitab4.5_0004917g0020' => 'nta', 'Nitab4.5_0007059g0010' => 'nta', 'Nitab4.5_0007184g0010' => 'nta', 'Nitab4.5_0007346g0020' => 'nta', 'Nn1g00410' => 'nnu', 'Nn1g01252' => 'nnu', 'Nn2g11168' => 'nnu', 'Nn2g13403' => 'nnu', 'Nn2g13760' => 'nnu', 'Nn4g26380' => 'nnu', 'Oeu000806.2' => 'oeu', 'Oeu005788.1' => 'oeu', 'Oeu006900.3' => 'oeu', 'Oeu007797.1' => 'oeu', 'Oeu011932.1' => 'oeu', 'Oeu022739.1' => 'oeu', 'Oeu037918.1' => 'oeu', 'Oeu055490.2' => 'oeu', 'Os01g0844400' => 'osa', 'Os02g0819100' => 'osa', 'Os03g0804300' => 'osa', 'Os05g0458000' => 'osa', 'Os07g0467800' => 'osa', 'Os12g0602200' => 'osa', 'Peaxi162Scf00013g03444' => 'pax', 'Peaxi162Scf00094g01120' => 'pax', 'Peaxi162Scf00191g01211' => 'pax', 'Peaxi162Scf00238g01110' => 'pax', 'Peaxi162Scf00330g00719' => 'pax', 'Peaxi162Scf00627g00018' => 'pax', 'PGR031G2686' => 'pgr', 'PGR042G0809' => 'pgr', 'PGR142G0193' => 'pgr', 'PGSC0003DMG400011066' => 'stu', 'PGSC0003DMG400012041' => 'stu', 'PGSC0003DMG400013678' => 'stu', 'PGSC0003DMG400023477' => 'stu', 'PGSC0003DMG400025956' => 'stu', 'PGSC0003DMG401019151' => 'stu', 'Phvul.006G116400' => 'pvu', 'Phvul.007G097300' => 'pvu', 'Phvul.010G015000' => 'pvu', 'Phvul.010G083900' => 'pvu', 'Potri.001G117100' => 'ptr', 'Potri.002G147300' => 'ptr', 'Potri.003G115600' => 'ptr', 'Potri.006G087400' => 'ptr', 'Potri.010G226100' => 'ptr', 'Potri.014G069200' => 'ptr', 'Potri.014G104000' => 'ptr', 'Potri.016G100200' => 'ptr', 'Pp3c10_20450' => 'ppa', 'Pp3c1_42400' => 'ppa', 'Pp3c3_24390' => 'ppa', 'Pp3c3_2860' => 'ppa', 'PRCOL_00003193' => 'pco', 'Prupe.2G144500' => 'ppe', 'Prupe.2G195700' => 'ppe', 'Prupe.2G209800' => 'ppe', 'Prupe.5G080000' => 'ppe', 'Prupe.6G257900' => 'ppe', 'Psat3g001160' => 'psa', 'Psat6g181880' => 'psa', 'Psat7g233720' => 'psa', 'PSO063G7587' => 'pso', 'PSO339G2145' => 'pso', 'PSO339G3369' => 'pso', 'PSO478G2747' => 'pso', 'PSO513G0140' => 'pso', 'PSO782G1614' => 'pso', 'PSO782G4889' => 'pso', 'PSO782G5485' => 'pso', 'PSO801G0241' => 'pso', 'QL07p048854' => 'qlo', 'QL08p046745' => 'qlo', 'QL08p052606' => 'qlo', 'QL08p053414' => 'qlo', 'QL08p054868' => 'qlo', 'RcHm_v2.0_Chr1g0350251' => 'rch', 'RcHm_v2.0_Chr1g0360851' => 'rch', 'RcHm_v2.0_Chr1g0362791' => 'rch', 'RcHm_v2.0_Chr3g0466281' => 'rch', 'RcHm_v2.0_Chr7g0201481' => 'rch', 'Rhsim01G0148600' => 'rsi', 'Rhsim05G0194400' => 'rsi', 'Rhsim07G0000700' => 'rsi', 'Rhsim07G0000800' => 'rsi', 'Rhsim07G0027900' => 'rsi', 'Rhsim09G0149500' => 'rsi', 'RhsimUnG0186900' => 'rsi', 'Sabra01G0089900' => 'sbr', 'Sabra02G0114700' => 'sbr', 'Sabra02G0116300' => 'sbr', 'Sabra03G0080100' => 'sbr', 'Sabra08G0024300' => 'sbr', 'Sabra10G0174300' => 'sbr', 'Sabra14G0048900' => 'sbr', 'Sabra14G0076500' => 'sbr', 'SalBow5G2513' => 'sbo', 'Sc01g0002300' => 'sci', 'Sc01g0004450' => 'sci', 'Sc06g0001680' => 'sci', 'Sc23g0003580' => 'sci', 'Sed0000913' => 'sed', 'Sed0001655' => 'sed', 'Sed0007745' => 'sed', 'Sed0010951' => 'sed', 'Sed0017599' => 'sed', 'Sed0021405' => 'sed', 'Sed0022810' => 'sed', 'SEGI_07099' => 'sgi', 'SEGI_11931' => 'sgi', 'SEGI_13187' => 'sgi', 'SEGI_29958' => 'sgi', 'SEGI_36351' => 'sgi', 'SGA_v2.0_scaffold126G33770' => 'sas', 'SGA_v2.0_scaffold153G37003' => 'sas', 'SGA_v2.0_scaffold2G01359' => 'sas', 'SGA_v2.0_scaffold5G03064' => 'sas', 'SGA_v2.0_scaffold95G28903' => 'sas', 'SHI12701' => 'shi', 'SHI26410' => 'shi', 'SHI38997' => 'shi', 'SHI53759' => 'shi', 'SHI53886' => 'shi', 'SHI54714' => 'shi', 'SMO011G0041' => 'smo', 'SMO146G0251' => 'smo', 'SMO160G0004' => 'smo', 'SMO174G0057' => 'smo', 'SMO244G0089' => 'smo', 'SMO296G0011' => 'smo', 'Solyc01g091280.3' => 'sly', 'Solyc05g047610.3' => 'sly', 'Solyc05g047640.3' => 'sly', 'Solyc05g055630.3' => 'sly', 'Solyc10g018160.2' => 'sly', 'Solyc10g084820.2' => 'sly', 'Solyc10g086565.2' => 'sly', 'Sopen01g037030' => 'spe', 'Sopen05g027920' => 'spe', 'Sopen05g034070' => 'spe', 'Sopen10g007260' => 'spe', 'Sopen10g034260' => 'spe', 'Sopen10g035950' => 'spe', 'Sp3g07710' => 'spa', 'Sp4g27420' => 'spa', 'Sp5g02450' => 'spa', 'Sp6g01280' => 'spa', 'Sp6g38480' => 'spa', 'Sp7g20780' => 'spa', 'TAR374G1413' => 'tar', 'TAR623G1777' => 'tar', 'TAR629G2370' => 'tar', 'TAR633G1759' => 'tar', 'TAR636G3387' => 'tar', 'THA.LOC104802447' => 'tha', 'THA.LOC104813916' => 'tha', 'THA.LOC104816423' => 'tha', 'THA.LOC104817246' => 'tha', 'THA.LOC104825895' => 'tha', 'Thecc.01G335200' => 'tca', 'Thecc.01G377400' => 'tca', 'Thecc.03G262200' => 'tca', 'Thecc.05G036800' => 'tca', 'Thecc.10G080500' => 'tca', 'Thecc.10G080800' => 'tca', 'Thhalv10001560m.g' => 'esa', 'Thhalv10006120m.g' => 'esa', 'Thhalv10014375m.g' => 'esa', 'Thhalv10021264m.g' => 'esa', 'Thhalv10028856m.g' => 'esa', 'TPR.G1914' => 'tpr', 'TPR.G4757' => 'tpr', 'TPR.G5595' => 'tpr', 'TWI14G0952' => 'twi', 'TWI14G1307' => 'twi', 'TWI38G2143' => 'twi', 'TWI59G0826' => 'twi', 'TWI77G0527' => 'twi', 'TWI81G0150' => 'twi', 'unitig_21.g21018' => 'ugi', 'unitig_26.g9725' => 'ugi', 'unitig_744.g24653' => 'ugi', 'unitig_749.g13778' => 'ugi', 'unitig_899.g15035' => 'ugi', 'vmacro04296' => 'vma', 'vmacro04852' => 'vma', 'vmacro13404' => 'vma', 'vmacro20169' => 'vma', 'vmacro21014' => 'vma', 'VMungo0331G0237' => 'vmu', 'VMungo0331G0706' => 'vmu', 'VMungo0331G1361' => 'vmu', 'VMungo0331G1489' => 'vmu', 'VMungo0540G1037' => 'vmu', 'VMungo0720G2487' => 'vmu', 'VMungo0720G2721' => 'vmu', 'Zm00001eb086860' => 'zma', 'Zm00001eb104760' => 'zma', 'Zm00001eb148220' => 'zma', 'Zm00001eb259030' => 'zma', 'Zm00001eb289590' => 'zma', 'Zm00001eb420150' => 'zma' ) $gf_id = 'HOM05D000968' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000968' ) $data_identifier = 'HOM05D000968' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 19, 'bol' => (int) 9, 'bra' => (int) 12, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 5, 'ccan' => (int) 7, 'cde' => (int) 5, 'cfa' => (int) 8, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 4, 'dca' => (int) 5, 'din' => (int) 5, 'dzi' => (int) 12, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 25, 'fve' => (int) 5, 'gma' => (int) 9, 'ghi' => (int) 18, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 7, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 5, 'sun' => (int) 2, 'lal' => (int) 9, 'lja' => (int) 5, 'lonja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 9, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 2, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 3, 'stu' => (int) 6, 'pvu' => (int) 4, 'ptr' => (int) 8, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 3, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 1, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 5, 'sas' => (int) 5, 'shi' => (int) 6, 'smo' => (int) 6, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 3, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420150' $species_info = array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ) $local_species = 'mpo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000968', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p31690' => 'bna', 'A03p36040' => 'bna', 'A03p53730' => 'bna', 'A04p01410' => 'bna', 'A05p05420' => 'bna', 'A05p39630' => 'bna', 'A05p39640' => 'bna', 'A09p00970' => 'bna', 'A09p53060' => 'bna', 'A10p31890' => 'bna', 'Aa31LG10G15040' => 'aar', 'Aa31LG1G21090' => 'aar', 'Aa31LG1G26900' => 'aar', 'Aa31LG3G1820' => 'aar', 'Aa31LG5G1100' => 'aar', 'Aa31LG6G4740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2265' => 'aag', 'Actinidia07998' => 'ach', 'Actinidia11266' => 'ach', 'Actinidia12682' => 'ach', 'Actinidia26479' => 'ach', 'Actinidia31406' => 'ach', 'Actinidia32437' => 'ach', 'Actinidia38862' => 'ach', 'Ah.05g174230' => 'amhyb', 'Ah.05g179070' => 'amhyb', 'Ah.05g179090' => 'amhyb', 'Ah.12g059950' => 'amhyb', 'AL3G20480' => 'aly', 'AL4G44520' => 'aly', 'AL5G43110' => 'aly', 'AL6G13890' => 'aly', 'AL6G52620' => 'aly', 'AL7G30830' => 'aly', 'Aqoxy1G00899' => 'aox', 'Aqoxy5G04333' => 'aox', 'Aqoxy7G00641' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3IZ0NN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4EF6AW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W9P8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79GA3M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C43NQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFCU6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G95YVJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCHK29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LU1UG8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX91RN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGB4B1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8DA0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9H7JI' => 'arhy', 'AT3G09320' => 'ath', 'AT3G60800' => 'ath', 'AT4G00840' => 'ath', 'AT4G22750' => 'ath', 'AT5G04270' => 'ath', 'ATR0090G003' => 'atr', 'ATR0559G349' => 'atr', 'ATR0680G261' => 'atr', 'ATR0810G048' => 'atr', 'Atru.chr12.831' => 'acertr', 'Atru.chr5.303' => 'acertr', 'Atru.chr5.748' => 'acertr', 'Atru.chr8.1999' => 'acertr', 'Atru.chr9.1436' => 'acertr', 'AUR62004211' => 'cqu', 'AUR62004548' => 'cqu', 'AUR62013637' => 'cqu', 'AUR62022662' => 'cqu', 'AUR62025777' => 'cqu', 'AUR62042386' => 'cqu', 'BcaB01g02310' => 'bca', 'BcaB01g06062' => 'bca', 'BcaB02g08975' => 'bca', 'BcaB02g08980' => 'bca', 'BcaC01g04228' => 'bca', 'BcaC01g06830' => 'bca', 'BcaC02g10186' => 'bca', 'BcaC02g12214' => 'bca', 'BcaC04g24101' => 'bca', 'BcaC05g29520' => 'bca', 'BcaC05g29661' => 'bca', 'BcaC06g32130' => 'bca', 'BcaC06g32131' => 'bca', 'BcaC07g40601' => 'bca', 'BcaC07g42641' => 'bca', 'BcaNung01038' => 'bca', 'BcaNung01676' => 'bca', 'BcaNung02480' => 'bca', 'BcaNung07376' => 'bca', 'BolC3t16146H' => 'bol', 'BolC3t16637H' => 'bol', 'BolC4t22257H' => 'bol', 'BolC4t24728H' => 'bol', 'BolC5t34517H' => 'bol', 'BolC7t45703H' => 'bol', 'BolC8t51166H' => 'bol', 'BolC9t53038H' => 'bol', 'BolC9t60000H' => 'bol', 'BraA01t01345Z' => 'bra', 'BraA01t01346Z' => 'bra', 'BraA01t01348Z' => 'bra', 'BraA03t12347Z' => 'bra', 'BraA03t12775Z' => 'bra', 'BraA03t14439Z' => 'bra', 'BraA04t15860Z' => 'bra', 'BraA05t19511Z' => 'bra', 'BraA05t22746Z' => 'bra', 'BraA09t35767Z' => 'bra', 'BraA09t40732Z' => 'bra', 'BraA10t45233Z' => 'bra', 'C03p38720' => 'bna', 'C03p43680' => 'bna', 'C04p06350' => 'bna', 'C04p31800' => 'bna', 'C05p58680' => 'bna', 'C07p52110' => 'bna', 'C08p35760' => 'bna', 'C09p01050' => 'bna', 'C09p72600' => 'bna', 'CAN.G106.2' => 'can', 'CAN.G1482.1' => 'can', 'CAN.G324.12' => 'can', 'CAN.G388.20' => 'can', 'CAN.G412.7' => 'can', 'CAN.G694.32' => 'can', 'CAN.G92.12' => 'can', 'CANSAT11G2353' => 'cansat', 'CANSAT21G1398' => 'cansat', 'CANSAT56G2456' => 'cansat', 'CANSAT56G3031' => 'cansat', 'CANSAT56G4539' => 'cansat', 'CARHR083680' => 'chi', 'CARHR171190' => 'chi', 'CARHR209010' => 'chi', 'CARHR229680' => 'chi', 'CARHR249490' => 'chi', 'Carub.0003s0844' => 'cru', 'Carub.0005s2755' => 'cru', 'Carub.0006s0322' => 'cru', 'Carub.0006s3586' => 'cru', 'Carub.0007s1855' => 'cru', 'Ca_07808_v3' => 'car', 'Ca_09535_v3' => 'car', 'Ca_10548_v3' => 'car', 'Ca_19913_v3' => 'car', 'Ca_19916_v3' => 'car', 'Ca_19975_v3' => 'car', 'CBR_g22876' => 'cbr', 'CBR_g22879' => 'cbr', 'CBR_g38491' => 'cbr', 'CBR_g54185' => 'cbr', 'CBR_g54190' => 'cbr', 'Cc02_g11020' => 'ccan', 'Cc02_g23920' => 'ccan', 'Cc02_g39860' => 'ccan', 'Cc02_g39870' => 'ccan', 'Cc03_g06760' => 'ccan', 'Cc06_g02450' => 'ccan', 'Cc09_g09450' => 'ccan', 'CDE02G1959' => 'cde', 'CDE04G0600' => 'cde', 'CDE07G1996' => 'cde', 'CDE07G2078' => 'cde', 'CDE11G0611' => 'cde', 'Cfa001683' => 'cfa', 'Cfa001734' => 'cfa', 'Cfa001737' => 'cfa', 'Cfa003751' => 'cfa', 'Cfa012019' => 'cfa', 'Cfa017353' => 'cfa', 'Cfa017732' => 'cfa', 'Cfa022464' => 'cfa', 'Ciclev10012400m.g' => 'ccl', 'Ciclev10021242m.g' => 'ccl', 'Ciclev10021302m.g' => 'ccl', 'Ciclev10021463m.g' => 'ccl', 'Ciclev10032359m.g' => 'ccl', 'CiPaw.01G081000' => 'cil', 'CiPaw.01G262500' => 'cil', 'CiPaw.01G269800' => 'cil', 'CiPaw.02G168400' => 'cil', 'CiPaw.05G119500' => 'cil', 'CiPaw.11G147300' => 'cil', 'ClCG01G003630' => 'cla', 'ClCG05G000510' => 'cla', 'ClCG05G002300' => 'cla', 'ClCG08G007650' => 'cla', 'ClCG10G021250' => 'cla', 'COL.COLO4_06218' => 'col', 'COL.COLO4_12538' => 'col', 'COL.COLO4_14775' => 'col', 'COL.COLO4_23875' => 'col', 'Cpa.g.sc141.16' => 'cpa', 'Cpa.g.sc169.16' => 'cpa', 'Cpa.g.sc244.4' => 'cpa', 'Cpa.g.sc244.5' => 'cpa', 'Cpa.g.sc29.87' => 'cpa', 'Cpa.g.sc53.115' => 'cpa', 'Cre03.g207502' => 'cre', 'Cre06.g277000' => 'cre', 'Cre09.g394050' => 'cre', 'CsaV3_3G007680' => 'csa', 'CsaV3_3G009710' => 'csa', 'CsaV3_3G034790' => 'csa', 'CsaV3_5G003750' => 'csa', 'CsaV3_6G036620' => 'csa', 'CSS0002288' => 'camsi', 'CSS0011250' => 'camsi', 'CSS0021619' => 'camsi', 'CSS0046701' => 'camsi', 'DCAR_006420' => 'dca', 'DCAR_006865' => 'dca', 'DCAR_008558' => 'dca', 'DCAR_028754' => 'dca', 'DCAR_028755' => 'dca', 'Dinv31218' => 'din', 'Dinv32371' => 'din', 'Dinv34250' => 'din', 'Dinv37156' => 'din', 'Dinv43704' => 'din', 'Duzib093G1811' => 'dzi', 'Duzib106G1622' => 'dzi', 'Duzib114G0504' => 'dzi', 'Duzib128G0338' => 'dzi', 'Duzib128G1577' => 'dzi', 'Duzib133G0104' => 'dzi', 'Duzib133G1080' => 'dzi', 'Duzib138G0324' => 'dzi', 'Duzib138G0394' => 'dzi', 'Duzib205G0122' => 'dzi', 'Duzib268G1020' => 'dzi', 'Duzib268G1359' => 'dzi', 'ECA232G3929' => 'eca', 'ECA236G2210' => 'eca', 'ECA236G2287' => 'eca', 'ECA240G4568' => 'eca', 'ECA247G0894' => 'eca', 'EL10Ac1g00200' => 'bvu', 'EL10Ac1g00886' => 'bvu', 'EL10As1g23091' => 'bvu', 'EL10As1g23092' => 'bvu', 'Eucgr.A01284' => 'egr', 'Eucgr.A01285' => 'egr', 'Eucgr.D02456' => 'egr', 'Eucgr.E00018' => 'egr', 'Eucgr.E01439' => 'egr', 'Eucgr.G02859' => 'egr', 'FAN01G0168' => 'fan', 'FAN01G0453' => 'fan', 'FAN01G2761' => 'fan', 'FAN02G1239' => 'fan', 'FAN03G0645' => 'fan', 'FAN03G2707' => 'fan', 'FAN03G2978' => 'fan', 'FAN04G0227' => 'fan', 'FAN06G0091' => 'fan', 'FAN06G1418' => 'fan', 'FAN06G1512' => 'fan', 'FAN06G1986' => 'fan', 'FAN06G2905' => 'fan', 'FAN06G4325' => 'fan', 'FAN08G0033' => 'fan', 'FAN09G0642' => 'fan', 'FAN10G1763' => 'fan', 'FAN10G2026' => 'fan', 'FAN10G2513' => 'fan', 'FAN10G3402' => 'fan', 'FAN10G3564' => 'fan', 'FAN10G3987' => 'fan', 'FAN13G1490' => 'fan', 'FAN14G5857' => 'fan', 'FAN18G1188' => 'fan', 'FvH4_5g00750' => 'fve', 'FvH4_6g13410' => 'fve', 'FvH4_7g11740' => 'fve', 'FvH4_7g17410' => 'fve', 'FvH4_7g18860' => 'fve', 'Glyma.01G099100' => 'gma', 'Glyma.01G142300' => 'gma', 'Glyma.03G025500' => 'gma', 'Glyma.03G069700' => 'gma', 'Glyma.03G260000' => 'gma', 'Glyma.09G269800' => 'gma', 'Glyma.10G208700' => 'gma', 'Glyma.18G220400' => 'gma', 'Glyma.20G182000' => 'gma', 'Gohir.A01G221726' => 'ghi', 'Gohir.A07G134600' => 'ghi', 'Gohir.A07G146000' => 'ghi', 'Gohir.A08G173900' => 'ghi', 'Gohir.A09G194900' => 'ghi', 'Gohir.A10G204100' => 'ghi', 'Gohir.A11G080600' => 'ghi', 'Gohir.A11G327500' => 'ghi', 'Gohir.A12G101800' => 'ghi', 'Gohir.D01G211200' => 'ghi', 'Gohir.D07G139200' => 'ghi', 'Gohir.D07G152100' => 'ghi', 'Gohir.D08G192600' => 'ghi', 'Gohir.D09G189200' => 'ghi', 'Gohir.D10G212000' => 'ghi', 'Gohir.D11G085200' => 'ghi', 'Gohir.D11G346400' => 'ghi', 'Gohir.D12G104800' => 'ghi', 'Gorai.001G151300' => 'gra', 'Gorai.001G174100' => 'gra', 'Gorai.002G257000' => 'gra', 'Gorai.004G202600' => 'gra', 'Gorai.007G090900' => 'gra', 'Gorai.007G376700' => 'gra', 'Gorai.008G114100' => 'gra', 'Gorai.011G237900' => 'gra', 'GSVIVG01005450001' => 'vvi', 'GSVIVG01016232001' => 'vvi', 'GSVIVG01026157001' => 'vvi', 'GSVIVG01027419001' => 'vvi', 'GSVIVG01027631001' => 'vvi', 'GSVIVG01034143001' => 'vvi', 'HanXRQChr03g0093921' => 'han', 'HanXRQChr04g0120001' => 'han', 'HanXRQChr04g0122561' => 'han', 'HanXRQChr09g0246851' => 'han', 'HanXRQChr10g0293311' => 'han', 'HanXRQChr13g0425231' => 'han', 'HanXRQChr16g0532571' => 'han', 'Haze_09050' => 'cav', 'Haze_15715' => 'cav', 'Haze_15716' => 'cav', 'Haze_16803' => 'cav', 'Haze_16850' => 'cav', 'Hma1.2p1_0301F.1_g118655' => 'hma', 'Hma1.2p1_0309F.1_g120590' => 'hma', 'Hma1.2p1_0936F.1_g238900' => 'hma', 'Hma1.2p1_3552F.1_g336740' => 'hma', 'HPP92_003520' => 'vpl', 'HPP92_006628' => 'vpl', 'HPP92_006645' => 'vpl', 'HPP92_014669' => 'vpl', 'HPP92_015077' => 'vpl', 'Hund16742' => 'sun', 'Hund17022' => 'sun', 'Lalb_Chr02g0152131' => 'lal', 'Lalb_Chr05g0225371' => 'lal', 'Lalb_Chr07g0189841' => 'lal', 'Lalb_Chr07g0192961' => 'lal', 'Lalb_Chr12g0208221' => 'lal', 'Lalb_Chr13g0291211' => 'lal', 'Lalb_Chr13g0291781' => 'lal', 'Lalb_Chr18g0044651' => 'lal', 'Lalb_Chr21g0313731' => 'lal', 'Lj1g0022533' => 'lja', 'Lj2A18T50' => 'lonja', 'Lj2A92G93' => 'lonja', 'Lj3A965T73' => 'lonja', 'Lj3g0000673' => 'lja', 'Lj3g0002666' => 'lja', 'Lj4g0016985' => 'lja', 'Lj5g0003625' => 'lja', 'Lj7A529G36' => 'lonja', 'Lj9A569T49' => 'lonja', 'Lj9A604T63' => 'lonja', 'Lsat_1_v5_gn_3_132060' => 'lsa', 'Lsat_1_v5_gn_4_68941' => 'lsa', 'Lsat_1_v5_gn_5_95580' => 'lsa', 'Lsat_1_v5_gn_7_161' => 'lsa', 'Lsat_1_v5_gn_7_7041' => 'lsa', 'Lsat_1_v5_gn_9_33481' => 'lsa', 'Lsat_1_v5_gn_9_68260' => 'lsa', 'Manes.01G073100' => 'mes', 'Manes.01G266300' => 'mes', 'Manes.02G033300' => 'mes', 'Manes.05G017900' => 'mes', 'Manes.05G046100' => 'mes', 'Manes.08G080900' => 'mes', 'Manes.10G049400' => 'mes', 'Mapoly0009s0186' => 'mpo', 'Mapoly0036s0118' => 'mpo', 'Mapoly0101s0046' => 'mpo', 'MBI04_g30218_MAGBIO' => 'mbi', 'MBI04_g35564_MAGBIO' => 'mbi', 'MBI12_g34011_MAGBIO' => 'mbi', 'MBI14_g04655_MAGBIO' => 'mbi', 'MCO07G653' => 'mco', 'MCO10G173' => 'mco', 'MD01G1087100' => 'mdo', 'MD01G1104200' => 'mdo', 'MD02G1205100' => 'mdo', 'MD04G1079200' => 'mdo', 'MD04G1131400' => 'mdo', 'MD07G1121600' => 'mdo', 'MD07G1157300' => 'mdo', 'MD07G1171000' => 'mdo', 'MD12G1144500' => 'mdo', 'Medtr1g094610' => 'mtr', 'Medtr4g021795' => 'mtr', 'Medtr4g023760' => 'mtr', 'Medtr7g118050' => 'mtr', 'MELO3C005582.2' => 'cme', 'MELO3C005989.2' => 'cme', 'MELO3C006192.2' => 'cme', 'MELO3C009248.2' => 'cme', 'MELO3C019817.2' => 'cme', 'Migut.B01625' => 'egut', 'Migut.B01915' => 'egut', 'Migut.F01721' => 'egut', 'Migut.J00314' => 'egut', 'MSTRG.20742' => 'ama', 'MSTRG.8134' => 'ama', 'Nitab4.5_0000096g0010' => 'nta', 'Nitab4.5_0000202g0030' => 'nta', 'Nitab4.5_0000216g0370' => 'nta', 'Nitab4.5_0000457g0230' => 'nta', 'Nitab4.5_0001702g0170' => 'nta', 'Nitab4.5_0003607g0010' => 'nta', 'Nitab4.5_0004917g0020' => 'nta', 'Nitab4.5_0007059g0010' => 'nta', 'Nitab4.5_0007184g0010' => 'nta', 'Nitab4.5_0007346g0020' => 'nta', 'Nn1g00410' => 'nnu', 'Nn1g01252' => 'nnu', 'Nn2g11168' => 'nnu', 'Nn2g13403' => 'nnu', 'Nn2g13760' => 'nnu', 'Nn4g26380' => 'nnu', 'Oeu000806.2' => 'oeu', 'Oeu005788.1' => 'oeu', 'Oeu006900.3' => 'oeu', 'Oeu007797.1' => 'oeu', 'Oeu011932.1' => 'oeu', 'Oeu022739.1' => 'oeu', 'Oeu037918.1' => 'oeu', 'Oeu055490.2' => 'oeu', 'Os01g0844400' => 'osa', 'Os02g0819100' => 'osa', 'Os03g0804300' => 'osa', 'Os05g0458000' => 'osa', 'Os07g0467800' => 'osa', 'Os12g0602200' => 'osa', 'Peaxi162Scf00013g03444' => 'pax', 'Peaxi162Scf00094g01120' => 'pax', 'Peaxi162Scf00191g01211' => 'pax', 'Peaxi162Scf00238g01110' => 'pax', 'Peaxi162Scf00330g00719' => 'pax', 'Peaxi162Scf00627g00018' => 'pax', 'PGR031G2686' => 'pgr', 'PGR042G0809' => 'pgr', 'PGR142G0193' => 'pgr', 'PGSC0003DMG400011066' => 'stu', 'PGSC0003DMG400012041' => 'stu', 'PGSC0003DMG400013678' => 'stu', 'PGSC0003DMG400023477' => 'stu', 'PGSC0003DMG400025956' => 'stu', 'PGSC0003DMG401019151' => 'stu', 'Phvul.006G116400' => 'pvu', 'Phvul.007G097300' => 'pvu', 'Phvul.010G015000' => 'pvu', 'Phvul.010G083900' => 'pvu', 'Potri.001G117100' => 'ptr', 'Potri.002G147300' => 'ptr', 'Potri.003G115600' => 'ptr', 'Potri.006G087400' => 'ptr', 'Potri.010G226100' => 'ptr', 'Potri.014G069200' => 'ptr', 'Potri.014G104000' => 'ptr', 'Potri.016G100200' => 'ptr', 'Pp3c10_20450' => 'ppa', 'Pp3c1_42400' => 'ppa', 'Pp3c3_24390' => 'ppa', 'Pp3c3_2860' => 'ppa', 'PRCOL_00003193' => 'pco', 'Prupe.2G144500' => 'ppe', 'Prupe.2G195700' => 'ppe', 'Prupe.2G209800' => 'ppe', 'Prupe.5G080000' => 'ppe', 'Prupe.6G257900' => 'ppe', 'Psat3g001160' => 'psa', 'Psat6g181880' => 'psa', 'Psat7g233720' => 'psa', 'PSO063G7587' => 'pso', 'PSO339G2145' => 'pso', 'PSO339G3369' => 'pso', 'PSO478G2747' => 'pso', 'PSO513G0140' => 'pso', 'PSO782G1614' => 'pso', 'PSO782G4889' => 'pso', 'PSO782G5485' => 'pso', 'PSO801G0241' => 'pso', 'QL07p048854' => 'qlo', 'QL08p046745' => 'qlo', 'QL08p052606' => 'qlo', 'QL08p053414' => 'qlo', 'QL08p054868' => 'qlo', 'RcHm_v2.0_Chr1g0350251' => 'rch', 'RcHm_v2.0_Chr1g0360851' => 'rch', 'RcHm_v2.0_Chr1g0362791' => 'rch', 'RcHm_v2.0_Chr3g0466281' => 'rch', 'RcHm_v2.0_Chr7g0201481' => 'rch', 'Rhsim01G0148600' => 'rsi', 'Rhsim05G0194400' => 'rsi', 'Rhsim07G0000700' => 'rsi', 'Rhsim07G0000800' => 'rsi', 'Rhsim07G0027900' => 'rsi', 'Rhsim09G0149500' => 'rsi', 'RhsimUnG0186900' => 'rsi', 'Sabra01G0089900' => 'sbr', 'Sabra02G0114700' => 'sbr', 'Sabra02G0116300' => 'sbr', 'Sabra03G0080100' => 'sbr', 'Sabra08G0024300' => 'sbr', 'Sabra10G0174300' => 'sbr', 'Sabra14G0048900' => 'sbr', 'Sabra14G0076500' => 'sbr', 'SalBow5G2513' => 'sbo', 'Sc01g0002300' => 'sci', 'Sc01g0004450' => 'sci', 'Sc06g0001680' => 'sci', 'Sc23g0003580' => 'sci', 'Sed0000913' => 'sed', 'Sed0001655' => 'sed', 'Sed0007745' => 'sed', 'Sed0010951' => 'sed', 'Sed0017599' => 'sed', 'Sed0021405' => 'sed', 'Sed0022810' => 'sed', 'SEGI_07099' => 'sgi', 'SEGI_11931' => 'sgi', 'SEGI_13187' => 'sgi', 'SEGI_29958' => 'sgi', 'SEGI_36351' => 'sgi', 'SGA_v2.0_scaffold126G33770' => 'sas', 'SGA_v2.0_scaffold153G37003' => 'sas', 'SGA_v2.0_scaffold2G01359' => 'sas', 'SGA_v2.0_scaffold5G03064' => 'sas', 'SGA_v2.0_scaffold95G28903' => 'sas', 'SHI12701' => 'shi', 'SHI26410' => 'shi', 'SHI38997' => 'shi', 'SHI53759' => 'shi', 'SHI53886' => 'shi', 'SHI54714' => 'shi', 'SMO011G0041' => 'smo', 'SMO146G0251' => 'smo', 'SMO160G0004' => 'smo', 'SMO174G0057' => 'smo', 'SMO244G0089' => 'smo', 'SMO296G0011' => 'smo', 'Solyc01g091280.3' => 'sly', 'Solyc05g047610.3' => 'sly', 'Solyc05g047640.3' => 'sly', 'Solyc05g055630.3' => 'sly', 'Solyc10g018160.2' => 'sly', 'Solyc10g084820.2' => 'sly', 'Solyc10g086565.2' => 'sly', 'Sopen01g037030' => 'spe', 'Sopen05g027920' => 'spe', 'Sopen05g034070' => 'spe', 'Sopen10g007260' => 'spe', 'Sopen10g034260' => 'spe', 'Sopen10g035950' => 'spe', 'Sp3g07710' => 'spa', 'Sp4g27420' => 'spa', 'Sp5g02450' => 'spa', 'Sp6g01280' => 'spa', 'Sp6g38480' => 'spa', 'Sp7g20780' => 'spa', 'TAR374G1413' => 'tar', 'TAR623G1777' => 'tar', 'TAR629G2370' => 'tar', 'TAR633G1759' => 'tar', 'TAR636G3387' => 'tar', 'THA.LOC104802447' => 'tha', 'THA.LOC104813916' => 'tha', 'THA.LOC104816423' => 'tha', 'THA.LOC104817246' => 'tha', 'THA.LOC104825895' => 'tha', 'Thecc.01G335200' => 'tca', 'Thecc.01G377400' => 'tca', 'Thecc.03G262200' => 'tca', 'Thecc.05G036800' => 'tca', 'Thecc.10G080500' => 'tca', 'Thecc.10G080800' => 'tca', 'Thhalv10001560m.g' => 'esa', 'Thhalv10006120m.g' => 'esa', 'Thhalv10014375m.g' => 'esa', 'Thhalv10021264m.g' => 'esa', 'Thhalv10028856m.g' => 'esa', 'TPR.G1914' => 'tpr', 'TPR.G4757' => 'tpr', 'TPR.G5595' => 'tpr', 'TWI14G0952' => 'twi', 'TWI14G1307' => 'twi', 'TWI38G2143' => 'twi', 'TWI59G0826' => 'twi', 'TWI77G0527' => 'twi', 'TWI81G0150' => 'twi', 'unitig_21.g21018' => 'ugi', 'unitig_26.g9725' => 'ugi', 'unitig_744.g24653' => 'ugi', 'unitig_749.g13778' => 'ugi', 'unitig_899.g15035' => 'ugi', 'vmacro04296' => 'vma', 'vmacro04852' => 'vma', 'vmacro13404' => 'vma', 'vmacro20169' => 'vma', 'vmacro21014' => 'vma', 'VMungo0331G0237' => 'vmu', 'VMungo0331G0706' => 'vmu', 'VMungo0331G1361' => 'vmu', 'VMungo0331G1489' => 'vmu', 'VMungo0540G1037' => 'vmu', 'VMungo0720G2487' => 'vmu', 'VMungo0720G2721' => 'vmu', 'Zm00001eb086860' => 'zma', 'Zm00001eb104760' => 'zma', 'Zm00001eb148220' => 'zma', 'Zm00001eb259030' => 'zma', 'Zm00001eb289590' => 'zma', 'Zm00001eb420150' => 'zma' ), 'gf_id' => 'HOM05D000968', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000968' ), 'data_identifier' => 'HOM05D000968', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000968', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p31690' => 'bna', 'A03p36040' => 'bna', 'A03p53730' => 'bna', 'A04p01410' => 'bna', 'A05p05420' => 'bna', 'A05p39630' => 'bna', 'A05p39640' => 'bna', 'A09p00970' => 'bna', 'A09p53060' => 'bna', 'A10p31890' => 'bna', 'Aa31LG10G15040' => 'aar', 'Aa31LG1G21090' => 'aar', 'Aa31LG1G26900' => 'aar', 'Aa31LG3G1820' => 'aar', 'Aa31LG5G1100' => 'aar', 'Aa31LG6G4740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2265' => 'aag', 'Actinidia07998' => 'ach', 'Actinidia11266' => 'ach', 'Actinidia12682' => 'ach', 'Actinidia26479' => 'ach', 'Actinidia31406' => 'ach', 'Actinidia32437' => 'ach', 'Actinidia38862' => 'ach', 'Ah.05g174230' => 'amhyb', 'Ah.05g179070' => 'amhyb', 'Ah.05g179090' => 'amhyb', 'Ah.12g059950' => 'amhyb', 'AL3G20480' => 'aly', 'AL4G44520' => 'aly', 'AL5G43110' => 'aly', 'AL6G13890' => 'aly', 'AL6G52620' => 'aly', 'AL7G30830' => 'aly', 'Aqoxy1G00899' => 'aox', 'Aqoxy5G04333' => 'aox', 'Aqoxy7G00641' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3IZ0NN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4EF6AW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W9P8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79GA3M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C43NQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFCU6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G95YVJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCHK29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LU1UG8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX91RN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGB4B1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8DA0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9H7JI' => 'arhy', 'AT3G09320' => 'ath', 'AT3G60800' => 'ath', 'AT4G00840' => 'ath', 'AT4G22750' => 'ath', 'AT5G04270' => 'ath', 'ATR0090G003' => 'atr', 'ATR0559G349' => 'atr', 'ATR0680G261' => 'atr', 'ATR0810G048' => 'atr', 'Atru.chr12.831' => 'acertr', 'Atru.chr5.303' => 'acertr', 'Atru.chr5.748' => 'acertr', 'Atru.chr8.1999' => 'acertr', 'Atru.chr9.1436' => 'acertr', 'AUR62004211' => 'cqu', 'AUR62004548' => 'cqu', 'AUR62013637' => 'cqu', 'AUR62022662' => 'cqu', 'AUR62025777' => 'cqu', 'AUR62042386' => 'cqu', 'BcaB01g02310' => 'bca', 'BcaB01g06062' => 'bca', 'BcaB02g08975' => 'bca', 'BcaB02g08980' => 'bca', 'BcaC01g04228' => 'bca', 'BcaC01g06830' => 'bca', 'BcaC02g10186' => 'bca', 'BcaC02g12214' => 'bca', 'BcaC04g24101' => 'bca', 'BcaC05g29520' => 'bca', 'BcaC05g29661' => 'bca', 'BcaC06g32130' => 'bca', 'BcaC06g32131' => 'bca', 'BcaC07g40601' => 'bca', 'BcaC07g42641' => 'bca', 'BcaNung01038' => 'bca', 'BcaNung01676' => 'bca', 'BcaNung02480' => 'bca', 'BcaNung07376' => 'bca', 'BolC3t16146H' => 'bol', 'BolC3t16637H' => 'bol', 'BolC4t22257H' => 'bol', 'BolC4t24728H' => 'bol', 'BolC5t34517H' => 'bol', 'BolC7t45703H' => 'bol', 'BolC8t51166H' => 'bol', 'BolC9t53038H' => 'bol', 'BolC9t60000H' => 'bol', 'BraA01t01345Z' => 'bra', 'BraA01t01346Z' => 'bra', 'BraA01t01348Z' => 'bra', 'BraA03t12347Z' => 'bra', 'BraA03t12775Z' => 'bra', 'BraA03t14439Z' => 'bra', 'BraA04t15860Z' => 'bra', 'BraA05t19511Z' => 'bra', 'BraA05t22746Z' => 'bra', 'BraA09t35767Z' => 'bra', 'BraA09t40732Z' => 'bra', 'BraA10t45233Z' => 'bra', 'C03p38720' => 'bna', 'C03p43680' => 'bna', 'C04p06350' => 'bna', 'C04p31800' => 'bna', 'C05p58680' => 'bna', 'C07p52110' => 'bna', 'C08p35760' => 'bna', 'C09p01050' => 'bna', 'C09p72600' => 'bna', 'CAN.G106.2' => 'can', 'CAN.G1482.1' => 'can', 'CAN.G324.12' => 'can', 'CAN.G388.20' => 'can', 'CAN.G412.7' => 'can', 'CAN.G694.32' => 'can', 'CAN.G92.12' => 'can', 'CANSAT11G2353' => 'cansat', 'CANSAT21G1398' => 'cansat', 'CANSAT56G2456' => 'cansat', 'CANSAT56G3031' => 'cansat', 'CANSAT56G4539' => 'cansat', 'CARHR083680' => 'chi', 'CARHR171190' => 'chi', 'CARHR209010' => 'chi', 'CARHR229680' => 'chi', 'CARHR249490' => 'chi', 'Carub.0003s0844' => 'cru', 'Carub.0005s2755' => 'cru', 'Carub.0006s0322' => 'cru', 'Carub.0006s3586' => 'cru', 'Carub.0007s1855' => 'cru', 'Ca_07808_v3' => 'car', 'Ca_09535_v3' => 'car', 'Ca_10548_v3' => 'car', 'Ca_19913_v3' => 'car', 'Ca_19916_v3' => 'car', 'Ca_19975_v3' => 'car', 'CBR_g22876' => 'cbr', 'CBR_g22879' => 'cbr', 'CBR_g38491' => 'cbr', 'CBR_g54185' => 'cbr', 'CBR_g54190' => 'cbr', 'Cc02_g11020' => 'ccan', 'Cc02_g23920' => 'ccan', 'Cc02_g39860' => 'ccan', 'Cc02_g39870' => 'ccan', 'Cc03_g06760' => 'ccan', 'Cc06_g02450' => 'ccan', 'Cc09_g09450' => 'ccan', 'CDE02G1959' => 'cde', 'CDE04G0600' => 'cde', 'CDE07G1996' => 'cde', 'CDE07G2078' => 'cde', 'CDE11G0611' => 'cde', 'Cfa001683' => 'cfa', 'Cfa001734' => 'cfa', 'Cfa001737' => 'cfa', 'Cfa003751' => 'cfa', 'Cfa012019' => 'cfa', 'Cfa017353' => 'cfa', 'Cfa017732' => 'cfa', 'Cfa022464' => 'cfa', 'Ciclev10012400m.g' => 'ccl', 'Ciclev10021242m.g' => 'ccl', 'Ciclev10021302m.g' => 'ccl', 'Ciclev10021463m.g' => 'ccl', 'Ciclev10032359m.g' => 'ccl', 'CiPaw.01G081000' => 'cil', 'CiPaw.01G262500' => 'cil', 'CiPaw.01G269800' => 'cil', 'CiPaw.02G168400' => 'cil', 'CiPaw.05G119500' => 'cil', 'CiPaw.11G147300' => 'cil', 'ClCG01G003630' => 'cla', 'ClCG05G000510' => 'cla', 'ClCG05G002300' => 'cla', 'ClCG08G007650' => 'cla', 'ClCG10G021250' => 'cla', 'COL.COLO4_06218' => 'col', 'COL.COLO4_12538' => 'col', 'COL.COLO4_14775' => 'col', 'COL.COLO4_23875' => 'col', 'Cpa.g.sc141.16' => 'cpa', 'Cpa.g.sc169.16' => 'cpa', 'Cpa.g.sc244.4' => 'cpa', 'Cpa.g.sc244.5' => 'cpa', 'Cpa.g.sc29.87' => 'cpa', 'Cpa.g.sc53.115' => 'cpa', 'Cre03.g207502' => 'cre', 'Cre06.g277000' => 'cre', 'Cre09.g394050' => 'cre', 'CsaV3_3G007680' => 'csa', 'CsaV3_3G009710' => 'csa', 'CsaV3_3G034790' => 'csa', 'CsaV3_5G003750' => 'csa', 'CsaV3_6G036620' => 'csa', 'CSS0002288' => 'camsi', 'CSS0011250' => 'camsi', 'CSS0021619' => 'camsi', 'CSS0046701' => 'camsi', 'DCAR_006420' => 'dca', 'DCAR_006865' => 'dca', 'DCAR_008558' => 'dca', 'DCAR_028754' => 'dca', 'DCAR_028755' => 'dca', 'Dinv31218' => 'din', 'Dinv32371' => 'din', 'Dinv34250' => 'din', 'Dinv37156' => 'din', 'Dinv43704' => 'din', 'Duzib093G1811' => 'dzi', 'Duzib106G1622' => 'dzi', 'Duzib114G0504' => 'dzi', 'Duzib128G0338' => 'dzi', 'Duzib128G1577' => 'dzi', 'Duzib133G0104' => 'dzi', 'Duzib133G1080' => 'dzi', 'Duzib138G0324' => 'dzi', 'Duzib138G0394' => 'dzi', 'Duzib205G0122' => 'dzi', 'Duzib268G1020' => 'dzi', 'Duzib268G1359' => 'dzi', 'ECA232G3929' => 'eca', 'ECA236G2210' => 'eca', 'ECA236G2287' => 'eca', 'ECA240G4568' => 'eca', 'ECA247G0894' => 'eca', 'EL10Ac1g00200' => 'bvu', 'EL10Ac1g00886' => 'bvu', 'EL10As1g23091' => 'bvu', 'EL10As1g23092' => 'bvu', 'Eucgr.A01284' => 'egr', 'Eucgr.A01285' => 'egr', 'Eucgr.D02456' => 'egr', 'Eucgr.E00018' => 'egr', 'Eucgr.E01439' => 'egr', 'Eucgr.G02859' => 'egr', 'FAN01G0168' => 'fan', 'FAN01G0453' => 'fan', 'FAN01G2761' => 'fan', 'FAN02G1239' => 'fan', 'FAN03G0645' => 'fan', 'FAN03G2707' => 'fan', 'FAN03G2978' => 'fan', 'FAN04G0227' => 'fan', 'FAN06G0091' => 'fan', 'FAN06G1418' => 'fan', 'FAN06G1512' => 'fan', 'FAN06G1986' => 'fan', 'FAN06G2905' => 'fan', 'FAN06G4325' => 'fan', 'FAN08G0033' => 'fan', 'FAN09G0642' => 'fan', 'FAN10G1763' => 'fan', 'FAN10G2026' => 'fan', 'FAN10G2513' => 'fan', 'FAN10G3402' => 'fan', 'FAN10G3564' => 'fan', 'FAN10G3987' => 'fan', 'FAN13G1490' => 'fan', 'FAN14G5857' => 'fan', 'FAN18G1188' => 'fan', 'FvH4_5g00750' => 'fve', 'FvH4_6g13410' => 'fve', 'FvH4_7g11740' => 'fve', 'FvH4_7g17410' => 'fve', 'FvH4_7g18860' => 'fve', 'Glyma.01G099100' => 'gma', 'Glyma.01G142300' => 'gma', 'Glyma.03G025500' => 'gma', 'Glyma.03G069700' => 'gma', 'Glyma.03G260000' => 'gma', 'Glyma.09G269800' => 'gma', 'Glyma.10G208700' => 'gma', 'Glyma.18G220400' => 'gma', 'Glyma.20G182000' => 'gma', 'Gohir.A01G221726' => 'ghi', 'Gohir.A07G134600' => 'ghi', 'Gohir.A07G146000' => 'ghi', 'Gohir.A08G173900' => 'ghi', 'Gohir.A09G194900' => 'ghi', 'Gohir.A10G204100' => 'ghi', 'Gohir.A11G080600' => 'ghi', 'Gohir.A11G327500' => 'ghi', 'Gohir.A12G101800' => 'ghi', 'Gohir.D01G211200' => 'ghi', 'Gohir.D07G139200' => 'ghi', 'Gohir.D07G152100' => 'ghi', 'Gohir.D08G192600' => 'ghi', 'Gohir.D09G189200' => 'ghi', 'Gohir.D10G212000' => 'ghi', 'Gohir.D11G085200' => 'ghi', 'Gohir.D11G346400' => 'ghi', 'Gohir.D12G104800' => 'ghi', 'Gorai.001G151300' => 'gra', 'Gorai.001G174100' => 'gra', 'Gorai.002G257000' => 'gra', 'Gorai.004G202600' => 'gra', 'Gorai.007G090900' => 'gra', 'Gorai.007G376700' => 'gra', 'Gorai.008G114100' => 'gra', 'Gorai.011G237900' => 'gra', 'GSVIVG01005450001' => 'vvi', 'GSVIVG01016232001' => 'vvi', 'GSVIVG01026157001' => 'vvi', 'GSVIVG01027419001' => 'vvi', 'GSVIVG01027631001' => 'vvi', 'GSVIVG01034143001' => 'vvi', 'HanXRQChr03g0093921' => 'han', 'HanXRQChr04g0120001' => 'han', 'HanXRQChr04g0122561' => 'han', 'HanXRQChr09g0246851' => 'han', 'HanXRQChr10g0293311' => 'han', 'HanXRQChr13g0425231' => 'han', 'HanXRQChr16g0532571' => 'han', 'Haze_09050' => 'cav', 'Haze_15715' => 'cav', 'Haze_15716' => 'cav', 'Haze_16803' => 'cav', 'Haze_16850' => 'cav', 'Hma1.2p1_0301F.1_g118655' => 'hma', 'Hma1.2p1_0309F.1_g120590' => 'hma', 'Hma1.2p1_0936F.1_g238900' => 'hma', 'Hma1.2p1_3552F.1_g336740' => 'hma', 'HPP92_003520' => 'vpl', 'HPP92_006628' => 'vpl', 'HPP92_006645' => 'vpl', 'HPP92_014669' => 'vpl', 'HPP92_015077' => 'vpl', 'Hund16742' => 'sun', 'Hund17022' => 'sun', 'Lalb_Chr02g0152131' => 'lal', 'Lalb_Chr05g0225371' => 'lal', 'Lalb_Chr07g0189841' => 'lal', 'Lalb_Chr07g0192961' => 'lal', 'Lalb_Chr12g0208221' => 'lal', 'Lalb_Chr13g0291211' => 'lal', 'Lalb_Chr13g0291781' => 'lal', 'Lalb_Chr18g0044651' => 'lal', 'Lalb_Chr21g0313731' => 'lal', 'Lj1g0022533' => 'lja', 'Lj2A18T50' => 'lonja', 'Lj2A92G93' => 'lonja', 'Lj3A965T73' => 'lonja', 'Lj3g0000673' => 'lja', 'Lj3g0002666' => 'lja', 'Lj4g0016985' => 'lja', 'Lj5g0003625' => 'lja', 'Lj7A529G36' => 'lonja', 'Lj9A569T49' => 'lonja', 'Lj9A604T63' => 'lonja', 'Lsat_1_v5_gn_3_132060' => 'lsa', 'Lsat_1_v5_gn_4_68941' => 'lsa', 'Lsat_1_v5_gn_5_95580' => 'lsa', 'Lsat_1_v5_gn_7_161' => 'lsa', 'Lsat_1_v5_gn_7_7041' => 'lsa', 'Lsat_1_v5_gn_9_33481' => 'lsa', 'Lsat_1_v5_gn_9_68260' => 'lsa', 'Manes.01G073100' => 'mes', 'Manes.01G266300' => 'mes', 'Manes.02G033300' => 'mes', 'Manes.05G017900' => 'mes', 'Manes.05G046100' => 'mes', 'Manes.08G080900' => 'mes', 'Manes.10G049400' => 'mes', 'Mapoly0009s0186' => 'mpo', 'Mapoly0036s0118' => 'mpo', 'Mapoly0101s0046' => 'mpo', 'MBI04_g30218_MAGBIO' => 'mbi', 'MBI04_g35564_MAGBIO' => 'mbi', 'MBI12_g34011_MAGBIO' => 'mbi', 'MBI14_g04655_MAGBIO' => 'mbi', 'MCO07G653' => 'mco', 'MCO10G173' => 'mco', 'MD01G1087100' => 'mdo', 'MD01G1104200' => 'mdo', 'MD02G1205100' => 'mdo', 'MD04G1079200' => 'mdo', 'MD04G1131400' => 'mdo', 'MD07G1121600' => 'mdo', 'MD07G1157300' => 'mdo', 'MD07G1171000' => 'mdo', 'MD12G1144500' => 'mdo', 'Medtr1g094610' => 'mtr', 'Medtr4g021795' => 'mtr', 'Medtr4g023760' => 'mtr', 'Medtr7g118050' => 'mtr', 'MELO3C005582.2' => 'cme', 'MELO3C005989.2' => 'cme', 'MELO3C006192.2' => 'cme', 'MELO3C009248.2' => 'cme', 'MELO3C019817.2' => 'cme', 'Migut.B01625' => 'egut', 'Migut.B01915' => 'egut', 'Migut.F01721' => 'egut', 'Migut.J00314' => 'egut', 'MSTRG.20742' => 'ama', 'MSTRG.8134' => 'ama', 'Nitab4.5_0000096g0010' => 'nta', 'Nitab4.5_0000202g0030' => 'nta', 'Nitab4.5_0000216g0370' => 'nta', 'Nitab4.5_0000457g0230' => 'nta', 'Nitab4.5_0001702g0170' => 'nta', 'Nitab4.5_0003607g0010' => 'nta', 'Nitab4.5_0004917g0020' => 'nta', 'Nitab4.5_0007059g0010' => 'nta', 'Nitab4.5_0007184g0010' => 'nta', 'Nitab4.5_0007346g0020' => 'nta', 'Nn1g00410' => 'nnu', 'Nn1g01252' => 'nnu', 'Nn2g11168' => 'nnu', 'Nn2g13403' => 'nnu', 'Nn2g13760' => 'nnu', 'Nn4g26380' => 'nnu', 'Oeu000806.2' => 'oeu', 'Oeu005788.1' => 'oeu', 'Oeu006900.3' => 'oeu', 'Oeu007797.1' => 'oeu', 'Oeu011932.1' => 'oeu', 'Oeu022739.1' => 'oeu', 'Oeu037918.1' => 'oeu', 'Oeu055490.2' => 'oeu', 'Os01g0844400' => 'osa', 'Os02g0819100' => 'osa', 'Os03g0804300' => 'osa', 'Os05g0458000' => 'osa', 'Os07g0467800' => 'osa', 'Os12g0602200' => 'osa', 'Peaxi162Scf00013g03444' => 'pax', 'Peaxi162Scf00094g01120' => 'pax', 'Peaxi162Scf00191g01211' => 'pax', 'Peaxi162Scf00238g01110' => 'pax', 'Peaxi162Scf00330g00719' => 'pax', 'Peaxi162Scf00627g00018' => 'pax', 'PGR031G2686' => 'pgr', 'PGR042G0809' => 'pgr', 'PGR142G0193' => 'pgr', 'PGSC0003DMG400011066' => 'stu', 'PGSC0003DMG400012041' => 'stu', 'PGSC0003DMG400013678' => 'stu', 'PGSC0003DMG400023477' => 'stu', 'PGSC0003DMG400025956' => 'stu', 'PGSC0003DMG401019151' => 'stu', 'Phvul.006G116400' => 'pvu', 'Phvul.007G097300' => 'pvu', 'Phvul.010G015000' => 'pvu', 'Phvul.010G083900' => 'pvu', 'Potri.001G117100' => 'ptr', 'Potri.002G147300' => 'ptr', 'Potri.003G115600' => 'ptr', 'Potri.006G087400' => 'ptr', 'Potri.010G226100' => 'ptr', 'Potri.014G069200' => 'ptr', 'Potri.014G104000' => 'ptr', 'Potri.016G100200' => 'ptr', 'Pp3c10_20450' => 'ppa', 'Pp3c1_42400' => 'ppa', 'Pp3c3_24390' => 'ppa', 'Pp3c3_2860' => 'ppa', 'PRCOL_00003193' => 'pco', 'Prupe.2G144500' => 'ppe', 'Prupe.2G195700' => 'ppe', 'Prupe.2G209800' => 'ppe', 'Prupe.5G080000' => 'ppe', 'Prupe.6G257900' => 'ppe', 'Psat3g001160' => 'psa', 'Psat6g181880' => 'psa', 'Psat7g233720' => 'psa', 'PSO063G7587' => 'pso', 'PSO339G2145' => 'pso', 'PSO339G3369' => 'pso', 'PSO478G2747' => 'pso', 'PSO513G0140' => 'pso', 'PSO782G1614' => 'pso', 'PSO782G4889' => 'pso', 'PSO782G5485' => 'pso', 'PSO801G0241' => 'pso', 'QL07p048854' => 'qlo', 'QL08p046745' => 'qlo', 'QL08p052606' => 'qlo', 'QL08p053414' => 'qlo', 'QL08p054868' => 'qlo', 'RcHm_v2.0_Chr1g0350251' => 'rch', 'RcHm_v2.0_Chr1g0360851' => 'rch', 'RcHm_v2.0_Chr1g0362791' => 'rch', 'RcHm_v2.0_Chr3g0466281' => 'rch', 'RcHm_v2.0_Chr7g0201481' => 'rch', 'Rhsim01G0148600' => 'rsi', 'Rhsim05G0194400' => 'rsi', 'Rhsim07G0000700' => 'rsi', 'Rhsim07G0000800' => 'rsi', 'Rhsim07G0027900' => 'rsi', 'Rhsim09G0149500' => 'rsi', 'RhsimUnG0186900' => 'rsi', 'Sabra01G0089900' => 'sbr', 'Sabra02G0114700' => 'sbr', 'Sabra02G0116300' => 'sbr', 'Sabra03G0080100' => 'sbr', 'Sabra08G0024300' => 'sbr', 'Sabra10G0174300' => 'sbr', 'Sabra14G0048900' => 'sbr', 'Sabra14G0076500' => 'sbr', 'SalBow5G2513' => 'sbo', 'Sc01g0002300' => 'sci', 'Sc01g0004450' => 'sci', 'Sc06g0001680' => 'sci', 'Sc23g0003580' => 'sci', 'Sed0000913' => 'sed', 'Sed0001655' => 'sed', 'Sed0007745' => 'sed', 'Sed0010951' => 'sed', 'Sed0017599' => 'sed', 'Sed0021405' => 'sed', 'Sed0022810' => 'sed', 'SEGI_07099' => 'sgi', 'SEGI_11931' => 'sgi', 'SEGI_13187' => 'sgi', 'SEGI_29958' => 'sgi', 'SEGI_36351' => 'sgi', 'SGA_v2.0_scaffold126G33770' => 'sas', 'SGA_v2.0_scaffold153G37003' => 'sas', 'SGA_v2.0_scaffold2G01359' => 'sas', 'SGA_v2.0_scaffold5G03064' => 'sas', 'SGA_v2.0_scaffold95G28903' => 'sas', 'SHI12701' => 'shi', 'SHI26410' => 'shi', 'SHI38997' => 'shi', 'SHI53759' => 'shi', 'SHI53886' => 'shi', 'SHI54714' => 'shi', 'SMO011G0041' => 'smo', 'SMO146G0251' => 'smo', 'SMO160G0004' => 'smo', 'SMO174G0057' => 'smo', 'SMO244G0089' => 'smo', 'SMO296G0011' => 'smo', 'Solyc01g091280.3' => 'sly', 'Solyc05g047610.3' => 'sly', 'Solyc05g047640.3' => 'sly', 'Solyc05g055630.3' => 'sly', 'Solyc10g018160.2' => 'sly', 'Solyc10g084820.2' => 'sly', 'Solyc10g086565.2' => 'sly', 'Sopen01g037030' => 'spe', 'Sopen05g027920' => 'spe', 'Sopen05g034070' => 'spe', 'Sopen10g007260' => 'spe', 'Sopen10g034260' => 'spe', 'Sopen10g035950' => 'spe', 'Sp3g07710' => 'spa', 'Sp4g27420' => 'spa', 'Sp5g02450' => 'spa', 'Sp6g01280' => 'spa', 'Sp6g38480' => 'spa', 'Sp7g20780' => 'spa', 'TAR374G1413' => 'tar', 'TAR623G1777' => 'tar', 'TAR629G2370' => 'tar', 'TAR633G1759' => 'tar', 'TAR636G3387' => 'tar', 'THA.LOC104802447' => 'tha', 'THA.LOC104813916' => 'tha', 'THA.LOC104816423' => 'tha', 'THA.LOC104817246' => 'tha', 'THA.LOC104825895' => 'tha', 'Thecc.01G335200' => 'tca', 'Thecc.01G377400' => 'tca', 'Thecc.03G262200' => 'tca', 'Thecc.05G036800' => 'tca', 'Thecc.10G080500' => 'tca', 'Thecc.10G080800' => 'tca', 'Thhalv10001560m.g' => 'esa', 'Thhalv10006120m.g' => 'esa', 'Thhalv10014375m.g' => 'esa', 'Thhalv10021264m.g' => 'esa', 'Thhalv10028856m.g' => 'esa', 'TPR.G1914' => 'tpr', 'TPR.G4757' => 'tpr', 'TPR.G5595' => 'tpr', 'TWI14G0952' => 'twi', 'TWI14G1307' => 'twi', 'TWI38G2143' => 'twi', 'TWI59G0826' => 'twi', 'TWI77G0527' => 'twi', 'TWI81G0150' => 'twi', 'unitig_21.g21018' => 'ugi', 'unitig_26.g9725' => 'ugi', 'unitig_744.g24653' => 'ugi', 'unitig_749.g13778' => 'ugi', 'unitig_899.g15035' => 'ugi', 'vmacro04296' => 'vma', 'vmacro04852' => 'vma', 'vmacro13404' => 'vma', 'vmacro20169' => 'vma', 'vmacro21014' => 'vma', 'VMungo0331G0237' => 'vmu', 'VMungo0331G0706' => 'vmu', 'VMungo0331G1361' => 'vmu', 'VMungo0331G1489' => 'vmu', 'VMungo0540G1037' => 'vmu', 'VMungo0720G2487' => 'vmu', 'VMungo0720G2721' => 'vmu', 'Zm00001eb086860' => 'zma', 'Zm00001eb104760' => 'zma', 'Zm00001eb148220' => 'zma', 'Zm00001eb259030' => 'zma', 'Zm00001eb289590' => 'zma', 'Zm00001eb420150' => 'zma' ) $gf_id = 'HOM05D000968' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000968' ) $data_identifier = 'HOM05D000968' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 19, 'bol' => (int) 9, 'bra' => (int) 12, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 5, 'ccan' => (int) 7, 'cde' => (int) 5, 'cfa' => (int) 8, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 4, 'dca' => (int) 5, 'din' => (int) 5, 'dzi' => (int) 12, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 25, 'fve' => (int) 5, 'gma' => (int) 9, 'ghi' => (int) 18, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 7, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 5, 'sun' => (int) 2, 'lal' => (int) 9, 'lja' => (int) 5, 'lonja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 9, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 2, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 3, 'stu' => (int) 6, 'pvu' => (int) 4, 'ptr' => (int) 8, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 3, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 1, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 5, 'sas' => (int) 5, 'shi' => (int) 6, 'smo' => (int) 6, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 3, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420150' $species_info = array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ) $local_species = 'mtr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000968', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p31690' => 'bna', 'A03p36040' => 'bna', 'A03p53730' => 'bna', 'A04p01410' => 'bna', 'A05p05420' => 'bna', 'A05p39630' => 'bna', 'A05p39640' => 'bna', 'A09p00970' => 'bna', 'A09p53060' => 'bna', 'A10p31890' => 'bna', 'Aa31LG10G15040' => 'aar', 'Aa31LG1G21090' => 'aar', 'Aa31LG1G26900' => 'aar', 'Aa31LG3G1820' => 'aar', 'Aa31LG5G1100' => 'aar', 'Aa31LG6G4740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2265' => 'aag', 'Actinidia07998' => 'ach', 'Actinidia11266' => 'ach', 'Actinidia12682' => 'ach', 'Actinidia26479' => 'ach', 'Actinidia31406' => 'ach', 'Actinidia32437' => 'ach', 'Actinidia38862' => 'ach', 'Ah.05g174230' => 'amhyb', 'Ah.05g179070' => 'amhyb', 'Ah.05g179090' => 'amhyb', 'Ah.12g059950' => 'amhyb', 'AL3G20480' => 'aly', 'AL4G44520' => 'aly', 'AL5G43110' => 'aly', 'AL6G13890' => 'aly', 'AL6G52620' => 'aly', 'AL7G30830' => 'aly', 'Aqoxy1G00899' => 'aox', 'Aqoxy5G04333' => 'aox', 'Aqoxy7G00641' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3IZ0NN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4EF6AW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W9P8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79GA3M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C43NQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFCU6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G95YVJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCHK29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LU1UG8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX91RN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGB4B1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8DA0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9H7JI' => 'arhy', 'AT3G09320' => 'ath', 'AT3G60800' => 'ath', 'AT4G00840' => 'ath', 'AT4G22750' => 'ath', 'AT5G04270' => 'ath', 'ATR0090G003' => 'atr', 'ATR0559G349' => 'atr', 'ATR0680G261' => 'atr', 'ATR0810G048' => 'atr', 'Atru.chr12.831' => 'acertr', 'Atru.chr5.303' => 'acertr', 'Atru.chr5.748' => 'acertr', 'Atru.chr8.1999' => 'acertr', 'Atru.chr9.1436' => 'acertr', 'AUR62004211' => 'cqu', 'AUR62004548' => 'cqu', 'AUR62013637' => 'cqu', 'AUR62022662' => 'cqu', 'AUR62025777' => 'cqu', 'AUR62042386' => 'cqu', 'BcaB01g02310' => 'bca', 'BcaB01g06062' => 'bca', 'BcaB02g08975' => 'bca', 'BcaB02g08980' => 'bca', 'BcaC01g04228' => 'bca', 'BcaC01g06830' => 'bca', 'BcaC02g10186' => 'bca', 'BcaC02g12214' => 'bca', 'BcaC04g24101' => 'bca', 'BcaC05g29520' => 'bca', 'BcaC05g29661' => 'bca', 'BcaC06g32130' => 'bca', 'BcaC06g32131' => 'bca', 'BcaC07g40601' => 'bca', 'BcaC07g42641' => 'bca', 'BcaNung01038' => 'bca', 'BcaNung01676' => 'bca', 'BcaNung02480' => 'bca', 'BcaNung07376' => 'bca', 'BolC3t16146H' => 'bol', 'BolC3t16637H' => 'bol', 'BolC4t22257H' => 'bol', 'BolC4t24728H' => 'bol', 'BolC5t34517H' => 'bol', 'BolC7t45703H' => 'bol', 'BolC8t51166H' => 'bol', 'BolC9t53038H' => 'bol', 'BolC9t60000H' => 'bol', 'BraA01t01345Z' => 'bra', 'BraA01t01346Z' => 'bra', 'BraA01t01348Z' => 'bra', 'BraA03t12347Z' => 'bra', 'BraA03t12775Z' => 'bra', 'BraA03t14439Z' => 'bra', 'BraA04t15860Z' => 'bra', 'BraA05t19511Z' => 'bra', 'BraA05t22746Z' => 'bra', 'BraA09t35767Z' => 'bra', 'BraA09t40732Z' => 'bra', 'BraA10t45233Z' => 'bra', 'C03p38720' => 'bna', 'C03p43680' => 'bna', 'C04p06350' => 'bna', 'C04p31800' => 'bna', 'C05p58680' => 'bna', 'C07p52110' => 'bna', 'C08p35760' => 'bna', 'C09p01050' => 'bna', 'C09p72600' => 'bna', 'CAN.G106.2' => 'can', 'CAN.G1482.1' => 'can', 'CAN.G324.12' => 'can', 'CAN.G388.20' => 'can', 'CAN.G412.7' => 'can', 'CAN.G694.32' => 'can', 'CAN.G92.12' => 'can', 'CANSAT11G2353' => 'cansat', 'CANSAT21G1398' => 'cansat', 'CANSAT56G2456' => 'cansat', 'CANSAT56G3031' => 'cansat', 'CANSAT56G4539' => 'cansat', 'CARHR083680' => 'chi', 'CARHR171190' => 'chi', 'CARHR209010' => 'chi', 'CARHR229680' => 'chi', 'CARHR249490' => 'chi', 'Carub.0003s0844' => 'cru', 'Carub.0005s2755' => 'cru', 'Carub.0006s0322' => 'cru', 'Carub.0006s3586' => 'cru', 'Carub.0007s1855' => 'cru', 'Ca_07808_v3' => 'car', 'Ca_09535_v3' => 'car', 'Ca_10548_v3' => 'car', 'Ca_19913_v3' => 'car', 'Ca_19916_v3' => 'car', 'Ca_19975_v3' => 'car', 'CBR_g22876' => 'cbr', 'CBR_g22879' => 'cbr', 'CBR_g38491' => 'cbr', 'CBR_g54185' => 'cbr', 'CBR_g54190' => 'cbr', 'Cc02_g11020' => 'ccan', 'Cc02_g23920' => 'ccan', 'Cc02_g39860' => 'ccan', 'Cc02_g39870' => 'ccan', 'Cc03_g06760' => 'ccan', 'Cc06_g02450' => 'ccan', 'Cc09_g09450' => 'ccan', 'CDE02G1959' => 'cde', 'CDE04G0600' => 'cde', 'CDE07G1996' => 'cde', 'CDE07G2078' => 'cde', 'CDE11G0611' => 'cde', 'Cfa001683' => 'cfa', 'Cfa001734' => 'cfa', 'Cfa001737' => 'cfa', 'Cfa003751' => 'cfa', 'Cfa012019' => 'cfa', 'Cfa017353' => 'cfa', 'Cfa017732' => 'cfa', 'Cfa022464' => 'cfa', 'Ciclev10012400m.g' => 'ccl', 'Ciclev10021242m.g' => 'ccl', 'Ciclev10021302m.g' => 'ccl', 'Ciclev10021463m.g' => 'ccl', 'Ciclev10032359m.g' => 'ccl', 'CiPaw.01G081000' => 'cil', 'CiPaw.01G262500' => 'cil', 'CiPaw.01G269800' => 'cil', 'CiPaw.02G168400' => 'cil', 'CiPaw.05G119500' => 'cil', 'CiPaw.11G147300' => 'cil', 'ClCG01G003630' => 'cla', 'ClCG05G000510' => 'cla', 'ClCG05G002300' => 'cla', 'ClCG08G007650' => 'cla', 'ClCG10G021250' => 'cla', 'COL.COLO4_06218' => 'col', 'COL.COLO4_12538' => 'col', 'COL.COLO4_14775' => 'col', 'COL.COLO4_23875' => 'col', 'Cpa.g.sc141.16' => 'cpa', 'Cpa.g.sc169.16' => 'cpa', 'Cpa.g.sc244.4' => 'cpa', 'Cpa.g.sc244.5' => 'cpa', 'Cpa.g.sc29.87' => 'cpa', 'Cpa.g.sc53.115' => 'cpa', 'Cre03.g207502' => 'cre', 'Cre06.g277000' => 'cre', 'Cre09.g394050' => 'cre', 'CsaV3_3G007680' => 'csa', 'CsaV3_3G009710' => 'csa', 'CsaV3_3G034790' => 'csa', 'CsaV3_5G003750' => 'csa', 'CsaV3_6G036620' => 'csa', 'CSS0002288' => 'camsi', 'CSS0011250' => 'camsi', 'CSS0021619' => 'camsi', 'CSS0046701' => 'camsi', 'DCAR_006420' => 'dca', 'DCAR_006865' => 'dca', 'DCAR_008558' => 'dca', 'DCAR_028754' => 'dca', 'DCAR_028755' => 'dca', 'Dinv31218' => 'din', 'Dinv32371' => 'din', 'Dinv34250' => 'din', 'Dinv37156' => 'din', 'Dinv43704' => 'din', 'Duzib093G1811' => 'dzi', 'Duzib106G1622' => 'dzi', 'Duzib114G0504' => 'dzi', 'Duzib128G0338' => 'dzi', 'Duzib128G1577' => 'dzi', 'Duzib133G0104' => 'dzi', 'Duzib133G1080' => 'dzi', 'Duzib138G0324' => 'dzi', 'Duzib138G0394' => 'dzi', 'Duzib205G0122' => 'dzi', 'Duzib268G1020' => 'dzi', 'Duzib268G1359' => 'dzi', 'ECA232G3929' => 'eca', 'ECA236G2210' => 'eca', 'ECA236G2287' => 'eca', 'ECA240G4568' => 'eca', 'ECA247G0894' => 'eca', 'EL10Ac1g00200' => 'bvu', 'EL10Ac1g00886' => 'bvu', 'EL10As1g23091' => 'bvu', 'EL10As1g23092' => 'bvu', 'Eucgr.A01284' => 'egr', 'Eucgr.A01285' => 'egr', 'Eucgr.D02456' => 'egr', 'Eucgr.E00018' => 'egr', 'Eucgr.E01439' => 'egr', 'Eucgr.G02859' => 'egr', 'FAN01G0168' => 'fan', 'FAN01G0453' => 'fan', 'FAN01G2761' => 'fan', 'FAN02G1239' => 'fan', 'FAN03G0645' => 'fan', 'FAN03G2707' => 'fan', 'FAN03G2978' => 'fan', 'FAN04G0227' => 'fan', 'FAN06G0091' => 'fan', 'FAN06G1418' => 'fan', 'FAN06G1512' => 'fan', 'FAN06G1986' => 'fan', 'FAN06G2905' => 'fan', 'FAN06G4325' => 'fan', 'FAN08G0033' => 'fan', 'FAN09G0642' => 'fan', 'FAN10G1763' => 'fan', 'FAN10G2026' => 'fan', 'FAN10G2513' => 'fan', 'FAN10G3402' => 'fan', 'FAN10G3564' => 'fan', 'FAN10G3987' => 'fan', 'FAN13G1490' => 'fan', 'FAN14G5857' => 'fan', 'FAN18G1188' => 'fan', 'FvH4_5g00750' => 'fve', 'FvH4_6g13410' => 'fve', 'FvH4_7g11740' => 'fve', 'FvH4_7g17410' => 'fve', 'FvH4_7g18860' => 'fve', 'Glyma.01G099100' => 'gma', 'Glyma.01G142300' => 'gma', 'Glyma.03G025500' => 'gma', 'Glyma.03G069700' => 'gma', 'Glyma.03G260000' => 'gma', 'Glyma.09G269800' => 'gma', 'Glyma.10G208700' => 'gma', 'Glyma.18G220400' => 'gma', 'Glyma.20G182000' => 'gma', 'Gohir.A01G221726' => 'ghi', 'Gohir.A07G134600' => 'ghi', 'Gohir.A07G146000' => 'ghi', 'Gohir.A08G173900' => 'ghi', 'Gohir.A09G194900' => 'ghi', 'Gohir.A10G204100' => 'ghi', 'Gohir.A11G080600' => 'ghi', 'Gohir.A11G327500' => 'ghi', 'Gohir.A12G101800' => 'ghi', 'Gohir.D01G211200' => 'ghi', 'Gohir.D07G139200' => 'ghi', 'Gohir.D07G152100' => 'ghi', 'Gohir.D08G192600' => 'ghi', 'Gohir.D09G189200' => 'ghi', 'Gohir.D10G212000' => 'ghi', 'Gohir.D11G085200' => 'ghi', 'Gohir.D11G346400' => 'ghi', 'Gohir.D12G104800' => 'ghi', 'Gorai.001G151300' => 'gra', 'Gorai.001G174100' => 'gra', 'Gorai.002G257000' => 'gra', 'Gorai.004G202600' => 'gra', 'Gorai.007G090900' => 'gra', 'Gorai.007G376700' => 'gra', 'Gorai.008G114100' => 'gra', 'Gorai.011G237900' => 'gra', 'GSVIVG01005450001' => 'vvi', 'GSVIVG01016232001' => 'vvi', 'GSVIVG01026157001' => 'vvi', 'GSVIVG01027419001' => 'vvi', 'GSVIVG01027631001' => 'vvi', 'GSVIVG01034143001' => 'vvi', 'HanXRQChr03g0093921' => 'han', 'HanXRQChr04g0120001' => 'han', 'HanXRQChr04g0122561' => 'han', 'HanXRQChr09g0246851' => 'han', 'HanXRQChr10g0293311' => 'han', 'HanXRQChr13g0425231' => 'han', 'HanXRQChr16g0532571' => 'han', 'Haze_09050' => 'cav', 'Haze_15715' => 'cav', 'Haze_15716' => 'cav', 'Haze_16803' => 'cav', 'Haze_16850' => 'cav', 'Hma1.2p1_0301F.1_g118655' => 'hma', 'Hma1.2p1_0309F.1_g120590' => 'hma', 'Hma1.2p1_0936F.1_g238900' => 'hma', 'Hma1.2p1_3552F.1_g336740' => 'hma', 'HPP92_003520' => 'vpl', 'HPP92_006628' => 'vpl', 'HPP92_006645' => 'vpl', 'HPP92_014669' => 'vpl', 'HPP92_015077' => 'vpl', 'Hund16742' => 'sun', 'Hund17022' => 'sun', 'Lalb_Chr02g0152131' => 'lal', 'Lalb_Chr05g0225371' => 'lal', 'Lalb_Chr07g0189841' => 'lal', 'Lalb_Chr07g0192961' => 'lal', 'Lalb_Chr12g0208221' => 'lal', 'Lalb_Chr13g0291211' => 'lal', 'Lalb_Chr13g0291781' => 'lal', 'Lalb_Chr18g0044651' => 'lal', 'Lalb_Chr21g0313731' => 'lal', 'Lj1g0022533' => 'lja', 'Lj2A18T50' => 'lonja', 'Lj2A92G93' => 'lonja', 'Lj3A965T73' => 'lonja', 'Lj3g0000673' => 'lja', 'Lj3g0002666' => 'lja', 'Lj4g0016985' => 'lja', 'Lj5g0003625' => 'lja', 'Lj7A529G36' => 'lonja', 'Lj9A569T49' => 'lonja', 'Lj9A604T63' => 'lonja', 'Lsat_1_v5_gn_3_132060' => 'lsa', 'Lsat_1_v5_gn_4_68941' => 'lsa', 'Lsat_1_v5_gn_5_95580' => 'lsa', 'Lsat_1_v5_gn_7_161' => 'lsa', 'Lsat_1_v5_gn_7_7041' => 'lsa', 'Lsat_1_v5_gn_9_33481' => 'lsa', 'Lsat_1_v5_gn_9_68260' => 'lsa', 'Manes.01G073100' => 'mes', 'Manes.01G266300' => 'mes', 'Manes.02G033300' => 'mes', 'Manes.05G017900' => 'mes', 'Manes.05G046100' => 'mes', 'Manes.08G080900' => 'mes', 'Manes.10G049400' => 'mes', 'Mapoly0009s0186' => 'mpo', 'Mapoly0036s0118' => 'mpo', 'Mapoly0101s0046' => 'mpo', 'MBI04_g30218_MAGBIO' => 'mbi', 'MBI04_g35564_MAGBIO' => 'mbi', 'MBI12_g34011_MAGBIO' => 'mbi', 'MBI14_g04655_MAGBIO' => 'mbi', 'MCO07G653' => 'mco', 'MCO10G173' => 'mco', 'MD01G1087100' => 'mdo', 'MD01G1104200' => 'mdo', 'MD02G1205100' => 'mdo', 'MD04G1079200' => 'mdo', 'MD04G1131400' => 'mdo', 'MD07G1121600' => 'mdo', 'MD07G1157300' => 'mdo', 'MD07G1171000' => 'mdo', 'MD12G1144500' => 'mdo', 'Medtr1g094610' => 'mtr', 'Medtr4g021795' => 'mtr', 'Medtr4g023760' => 'mtr', 'Medtr7g118050' => 'mtr', 'MELO3C005582.2' => 'cme', 'MELO3C005989.2' => 'cme', 'MELO3C006192.2' => 'cme', 'MELO3C009248.2' => 'cme', 'MELO3C019817.2' => 'cme', 'Migut.B01625' => 'egut', 'Migut.B01915' => 'egut', 'Migut.F01721' => 'egut', 'Migut.J00314' => 'egut', 'MSTRG.20742' => 'ama', 'MSTRG.8134' => 'ama', 'Nitab4.5_0000096g0010' => 'nta', 'Nitab4.5_0000202g0030' => 'nta', 'Nitab4.5_0000216g0370' => 'nta', 'Nitab4.5_0000457g0230' => 'nta', 'Nitab4.5_0001702g0170' => 'nta', 'Nitab4.5_0003607g0010' => 'nta', 'Nitab4.5_0004917g0020' => 'nta', 'Nitab4.5_0007059g0010' => 'nta', 'Nitab4.5_0007184g0010' => 'nta', 'Nitab4.5_0007346g0020' => 'nta', 'Nn1g00410' => 'nnu', 'Nn1g01252' => 'nnu', 'Nn2g11168' => 'nnu', 'Nn2g13403' => 'nnu', 'Nn2g13760' => 'nnu', 'Nn4g26380' => 'nnu', 'Oeu000806.2' => 'oeu', 'Oeu005788.1' => 'oeu', 'Oeu006900.3' => 'oeu', 'Oeu007797.1' => 'oeu', 'Oeu011932.1' => 'oeu', 'Oeu022739.1' => 'oeu', 'Oeu037918.1' => 'oeu', 'Oeu055490.2' => 'oeu', 'Os01g0844400' => 'osa', 'Os02g0819100' => 'osa', 'Os03g0804300' => 'osa', 'Os05g0458000' => 'osa', 'Os07g0467800' => 'osa', 'Os12g0602200' => 'osa', 'Peaxi162Scf00013g03444' => 'pax', 'Peaxi162Scf00094g01120' => 'pax', 'Peaxi162Scf00191g01211' => 'pax', 'Peaxi162Scf00238g01110' => 'pax', 'Peaxi162Scf00330g00719' => 'pax', 'Peaxi162Scf00627g00018' => 'pax', 'PGR031G2686' => 'pgr', 'PGR042G0809' => 'pgr', 'PGR142G0193' => 'pgr', 'PGSC0003DMG400011066' => 'stu', 'PGSC0003DMG400012041' => 'stu', 'PGSC0003DMG400013678' => 'stu', 'PGSC0003DMG400023477' => 'stu', 'PGSC0003DMG400025956' => 'stu', 'PGSC0003DMG401019151' => 'stu', 'Phvul.006G116400' => 'pvu', 'Phvul.007G097300' => 'pvu', 'Phvul.010G015000' => 'pvu', 'Phvul.010G083900' => 'pvu', 'Potri.001G117100' => 'ptr', 'Potri.002G147300' => 'ptr', 'Potri.003G115600' => 'ptr', 'Potri.006G087400' => 'ptr', 'Potri.010G226100' => 'ptr', 'Potri.014G069200' => 'ptr', 'Potri.014G104000' => 'ptr', 'Potri.016G100200' => 'ptr', 'Pp3c10_20450' => 'ppa', 'Pp3c1_42400' => 'ppa', 'Pp3c3_24390' => 'ppa', 'Pp3c3_2860' => 'ppa', 'PRCOL_00003193' => 'pco', 'Prupe.2G144500' => 'ppe', 'Prupe.2G195700' => 'ppe', 'Prupe.2G209800' => 'ppe', 'Prupe.5G080000' => 'ppe', 'Prupe.6G257900' => 'ppe', 'Psat3g001160' => 'psa', 'Psat6g181880' => 'psa', 'Psat7g233720' => 'psa', 'PSO063G7587' => 'pso', 'PSO339G2145' => 'pso', 'PSO339G3369' => 'pso', 'PSO478G2747' => 'pso', 'PSO513G0140' => 'pso', 'PSO782G1614' => 'pso', 'PSO782G4889' => 'pso', 'PSO782G5485' => 'pso', 'PSO801G0241' => 'pso', 'QL07p048854' => 'qlo', 'QL08p046745' => 'qlo', 'QL08p052606' => 'qlo', 'QL08p053414' => 'qlo', 'QL08p054868' => 'qlo', 'RcHm_v2.0_Chr1g0350251' => 'rch', 'RcHm_v2.0_Chr1g0360851' => 'rch', 'RcHm_v2.0_Chr1g0362791' => 'rch', 'RcHm_v2.0_Chr3g0466281' => 'rch', 'RcHm_v2.0_Chr7g0201481' => 'rch', 'Rhsim01G0148600' => 'rsi', 'Rhsim05G0194400' => 'rsi', 'Rhsim07G0000700' => 'rsi', 'Rhsim07G0000800' => 'rsi', 'Rhsim07G0027900' => 'rsi', 'Rhsim09G0149500' => 'rsi', 'RhsimUnG0186900' => 'rsi', 'Sabra01G0089900' => 'sbr', 'Sabra02G0114700' => 'sbr', 'Sabra02G0116300' => 'sbr', 'Sabra03G0080100' => 'sbr', 'Sabra08G0024300' => 'sbr', 'Sabra10G0174300' => 'sbr', 'Sabra14G0048900' => 'sbr', 'Sabra14G0076500' => 'sbr', 'SalBow5G2513' => 'sbo', 'Sc01g0002300' => 'sci', 'Sc01g0004450' => 'sci', 'Sc06g0001680' => 'sci', 'Sc23g0003580' => 'sci', 'Sed0000913' => 'sed', 'Sed0001655' => 'sed', 'Sed0007745' => 'sed', 'Sed0010951' => 'sed', 'Sed0017599' => 'sed', 'Sed0021405' => 'sed', 'Sed0022810' => 'sed', 'SEGI_07099' => 'sgi', 'SEGI_11931' => 'sgi', 'SEGI_13187' => 'sgi', 'SEGI_29958' => 'sgi', 'SEGI_36351' => 'sgi', 'SGA_v2.0_scaffold126G33770' => 'sas', 'SGA_v2.0_scaffold153G37003' => 'sas', 'SGA_v2.0_scaffold2G01359' => 'sas', 'SGA_v2.0_scaffold5G03064' => 'sas', 'SGA_v2.0_scaffold95G28903' => 'sas', 'SHI12701' => 'shi', 'SHI26410' => 'shi', 'SHI38997' => 'shi', 'SHI53759' => 'shi', 'SHI53886' => 'shi', 'SHI54714' => 'shi', 'SMO011G0041' => 'smo', 'SMO146G0251' => 'smo', 'SMO160G0004' => 'smo', 'SMO174G0057' => 'smo', 'SMO244G0089' => 'smo', 'SMO296G0011' => 'smo', 'Solyc01g091280.3' => 'sly', 'Solyc05g047610.3' => 'sly', 'Solyc05g047640.3' => 'sly', 'Solyc05g055630.3' => 'sly', 'Solyc10g018160.2' => 'sly', 'Solyc10g084820.2' => 'sly', 'Solyc10g086565.2' => 'sly', 'Sopen01g037030' => 'spe', 'Sopen05g027920' => 'spe', 'Sopen05g034070' => 'spe', 'Sopen10g007260' => 'spe', 'Sopen10g034260' => 'spe', 'Sopen10g035950' => 'spe', 'Sp3g07710' => 'spa', 'Sp4g27420' => 'spa', 'Sp5g02450' => 'spa', 'Sp6g01280' => 'spa', 'Sp6g38480' => 'spa', 'Sp7g20780' => 'spa', 'TAR374G1413' => 'tar', 'TAR623G1777' => 'tar', 'TAR629G2370' => 'tar', 'TAR633G1759' => 'tar', 'TAR636G3387' => 'tar', 'THA.LOC104802447' => 'tha', 'THA.LOC104813916' => 'tha', 'THA.LOC104816423' => 'tha', 'THA.LOC104817246' => 'tha', 'THA.LOC104825895' => 'tha', 'Thecc.01G335200' => 'tca', 'Thecc.01G377400' => 'tca', 'Thecc.03G262200' => 'tca', 'Thecc.05G036800' => 'tca', 'Thecc.10G080500' => 'tca', 'Thecc.10G080800' => 'tca', 'Thhalv10001560m.g' => 'esa', 'Thhalv10006120m.g' => 'esa', 'Thhalv10014375m.g' => 'esa', 'Thhalv10021264m.g' => 'esa', 'Thhalv10028856m.g' => 'esa', 'TPR.G1914' => 'tpr', 'TPR.G4757' => 'tpr', 'TPR.G5595' => 'tpr', 'TWI14G0952' => 'twi', 'TWI14G1307' => 'twi', 'TWI38G2143' => 'twi', 'TWI59G0826' => 'twi', 'TWI77G0527' => 'twi', 'TWI81G0150' => 'twi', 'unitig_21.g21018' => 'ugi', 'unitig_26.g9725' => 'ugi', 'unitig_744.g24653' => 'ugi', 'unitig_749.g13778' => 'ugi', 'unitig_899.g15035' => 'ugi', 'vmacro04296' => 'vma', 'vmacro04852' => 'vma', 'vmacro13404' => 'vma', 'vmacro20169' => 'vma', 'vmacro21014' => 'vma', 'VMungo0331G0237' => 'vmu', 'VMungo0331G0706' => 'vmu', 'VMungo0331G1361' => 'vmu', 'VMungo0331G1489' => 'vmu', 'VMungo0540G1037' => 'vmu', 'VMungo0720G2487' => 'vmu', 'VMungo0720G2721' => 'vmu', 'Zm00001eb086860' => 'zma', 'Zm00001eb104760' => 'zma', 'Zm00001eb148220' => 'zma', 'Zm00001eb259030' => 'zma', 'Zm00001eb289590' => 'zma', 'Zm00001eb420150' => 'zma' ), 'gf_id' => 'HOM05D000968', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000968' ), 'data_identifier' => 'HOM05D000968', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000968', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p31690' => 'bna', 'A03p36040' => 'bna', 'A03p53730' => 'bna', 'A04p01410' => 'bna', 'A05p05420' => 'bna', 'A05p39630' => 'bna', 'A05p39640' => 'bna', 'A09p00970' => 'bna', 'A09p53060' => 'bna', 'A10p31890' => 'bna', 'Aa31LG10G15040' => 'aar', 'Aa31LG1G21090' => 'aar', 'Aa31LG1G26900' => 'aar', 'Aa31LG3G1820' => 'aar', 'Aa31LG5G1100' => 'aar', 'Aa31LG6G4740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2265' => 'aag', 'Actinidia07998' => 'ach', 'Actinidia11266' => 'ach', 'Actinidia12682' => 'ach', 'Actinidia26479' => 'ach', 'Actinidia31406' => 'ach', 'Actinidia32437' => 'ach', 'Actinidia38862' => 'ach', 'Ah.05g174230' => 'amhyb', 'Ah.05g179070' => 'amhyb', 'Ah.05g179090' => 'amhyb', 'Ah.12g059950' => 'amhyb', 'AL3G20480' => 'aly', 'AL4G44520' => 'aly', 'AL5G43110' => 'aly', 'AL6G13890' => 'aly', 'AL6G52620' => 'aly', 'AL7G30830' => 'aly', 'Aqoxy1G00899' => 'aox', 'Aqoxy5G04333' => 'aox', 'Aqoxy7G00641' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3IZ0NN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4EF6AW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W9P8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79GA3M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C43NQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFCU6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G95YVJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCHK29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LU1UG8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX91RN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGB4B1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8DA0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9H7JI' => 'arhy', 'AT3G09320' => 'ath', 'AT3G60800' => 'ath', 'AT4G00840' => 'ath', 'AT4G22750' => 'ath', 'AT5G04270' => 'ath', 'ATR0090G003' => 'atr', 'ATR0559G349' => 'atr', 'ATR0680G261' => 'atr', 'ATR0810G048' => 'atr', 'Atru.chr12.831' => 'acertr', 'Atru.chr5.303' => 'acertr', 'Atru.chr5.748' => 'acertr', 'Atru.chr8.1999' => 'acertr', 'Atru.chr9.1436' => 'acertr', 'AUR62004211' => 'cqu', 'AUR62004548' => 'cqu', 'AUR62013637' => 'cqu', 'AUR62022662' => 'cqu', 'AUR62025777' => 'cqu', 'AUR62042386' => 'cqu', 'BcaB01g02310' => 'bca', 'BcaB01g06062' => 'bca', 'BcaB02g08975' => 'bca', 'BcaB02g08980' => 'bca', 'BcaC01g04228' => 'bca', 'BcaC01g06830' => 'bca', 'BcaC02g10186' => 'bca', 'BcaC02g12214' => 'bca', 'BcaC04g24101' => 'bca', 'BcaC05g29520' => 'bca', 'BcaC05g29661' => 'bca', 'BcaC06g32130' => 'bca', 'BcaC06g32131' => 'bca', 'BcaC07g40601' => 'bca', 'BcaC07g42641' => 'bca', 'BcaNung01038' => 'bca', 'BcaNung01676' => 'bca', 'BcaNung02480' => 'bca', 'BcaNung07376' => 'bca', 'BolC3t16146H' => 'bol', 'BolC3t16637H' => 'bol', 'BolC4t22257H' => 'bol', 'BolC4t24728H' => 'bol', 'BolC5t34517H' => 'bol', 'BolC7t45703H' => 'bol', 'BolC8t51166H' => 'bol', 'BolC9t53038H' => 'bol', 'BolC9t60000H' => 'bol', 'BraA01t01345Z' => 'bra', 'BraA01t01346Z' => 'bra', 'BraA01t01348Z' => 'bra', 'BraA03t12347Z' => 'bra', 'BraA03t12775Z' => 'bra', 'BraA03t14439Z' => 'bra', 'BraA04t15860Z' => 'bra', 'BraA05t19511Z' => 'bra', 'BraA05t22746Z' => 'bra', 'BraA09t35767Z' => 'bra', 'BraA09t40732Z' => 'bra', 'BraA10t45233Z' => 'bra', 'C03p38720' => 'bna', 'C03p43680' => 'bna', 'C04p06350' => 'bna', 'C04p31800' => 'bna', 'C05p58680' => 'bna', 'C07p52110' => 'bna', 'C08p35760' => 'bna', 'C09p01050' => 'bna', 'C09p72600' => 'bna', 'CAN.G106.2' => 'can', 'CAN.G1482.1' => 'can', 'CAN.G324.12' => 'can', 'CAN.G388.20' => 'can', 'CAN.G412.7' => 'can', 'CAN.G694.32' => 'can', 'CAN.G92.12' => 'can', 'CANSAT11G2353' => 'cansat', 'CANSAT21G1398' => 'cansat', 'CANSAT56G2456' => 'cansat', 'CANSAT56G3031' => 'cansat', 'CANSAT56G4539' => 'cansat', 'CARHR083680' => 'chi', 'CARHR171190' => 'chi', 'CARHR209010' => 'chi', 'CARHR229680' => 'chi', 'CARHR249490' => 'chi', 'Carub.0003s0844' => 'cru', 'Carub.0005s2755' => 'cru', 'Carub.0006s0322' => 'cru', 'Carub.0006s3586' => 'cru', 'Carub.0007s1855' => 'cru', 'Ca_07808_v3' => 'car', 'Ca_09535_v3' => 'car', 'Ca_10548_v3' => 'car', 'Ca_19913_v3' => 'car', 'Ca_19916_v3' => 'car', 'Ca_19975_v3' => 'car', 'CBR_g22876' => 'cbr', 'CBR_g22879' => 'cbr', 'CBR_g38491' => 'cbr', 'CBR_g54185' => 'cbr', 'CBR_g54190' => 'cbr', 'Cc02_g11020' => 'ccan', 'Cc02_g23920' => 'ccan', 'Cc02_g39860' => 'ccan', 'Cc02_g39870' => 'ccan', 'Cc03_g06760' => 'ccan', 'Cc06_g02450' => 'ccan', 'Cc09_g09450' => 'ccan', 'CDE02G1959' => 'cde', 'CDE04G0600' => 'cde', 'CDE07G1996' => 'cde', 'CDE07G2078' => 'cde', 'CDE11G0611' => 'cde', 'Cfa001683' => 'cfa', 'Cfa001734' => 'cfa', 'Cfa001737' => 'cfa', 'Cfa003751' => 'cfa', 'Cfa012019' => 'cfa', 'Cfa017353' => 'cfa', 'Cfa017732' => 'cfa', 'Cfa022464' => 'cfa', 'Ciclev10012400m.g' => 'ccl', 'Ciclev10021242m.g' => 'ccl', 'Ciclev10021302m.g' => 'ccl', 'Ciclev10021463m.g' => 'ccl', 'Ciclev10032359m.g' => 'ccl', 'CiPaw.01G081000' => 'cil', 'CiPaw.01G262500' => 'cil', 'CiPaw.01G269800' => 'cil', 'CiPaw.02G168400' => 'cil', 'CiPaw.05G119500' => 'cil', 'CiPaw.11G147300' => 'cil', 'ClCG01G003630' => 'cla', 'ClCG05G000510' => 'cla', 'ClCG05G002300' => 'cla', 'ClCG08G007650' => 'cla', 'ClCG10G021250' => 'cla', 'COL.COLO4_06218' => 'col', 'COL.COLO4_12538' => 'col', 'COL.COLO4_14775' => 'col', 'COL.COLO4_23875' => 'col', 'Cpa.g.sc141.16' => 'cpa', 'Cpa.g.sc169.16' => 'cpa', 'Cpa.g.sc244.4' => 'cpa', 'Cpa.g.sc244.5' => 'cpa', 'Cpa.g.sc29.87' => 'cpa', 'Cpa.g.sc53.115' => 'cpa', 'Cre03.g207502' => 'cre', 'Cre06.g277000' => 'cre', 'Cre09.g394050' => 'cre', 'CsaV3_3G007680' => 'csa', 'CsaV3_3G009710' => 'csa', 'CsaV3_3G034790' => 'csa', 'CsaV3_5G003750' => 'csa', 'CsaV3_6G036620' => 'csa', 'CSS0002288' => 'camsi', 'CSS0011250' => 'camsi', 'CSS0021619' => 'camsi', 'CSS0046701' => 'camsi', 'DCAR_006420' => 'dca', 'DCAR_006865' => 'dca', 'DCAR_008558' => 'dca', 'DCAR_028754' => 'dca', 'DCAR_028755' => 'dca', 'Dinv31218' => 'din', 'Dinv32371' => 'din', 'Dinv34250' => 'din', 'Dinv37156' => 'din', 'Dinv43704' => 'din', 'Duzib093G1811' => 'dzi', 'Duzib106G1622' => 'dzi', 'Duzib114G0504' => 'dzi', 'Duzib128G0338' => 'dzi', 'Duzib128G1577' => 'dzi', 'Duzib133G0104' => 'dzi', 'Duzib133G1080' => 'dzi', 'Duzib138G0324' => 'dzi', 'Duzib138G0394' => 'dzi', 'Duzib205G0122' => 'dzi', 'Duzib268G1020' => 'dzi', 'Duzib268G1359' => 'dzi', 'ECA232G3929' => 'eca', 'ECA236G2210' => 'eca', 'ECA236G2287' => 'eca', 'ECA240G4568' => 'eca', 'ECA247G0894' => 'eca', 'EL10Ac1g00200' => 'bvu', 'EL10Ac1g00886' => 'bvu', 'EL10As1g23091' => 'bvu', 'EL10As1g23092' => 'bvu', 'Eucgr.A01284' => 'egr', 'Eucgr.A01285' => 'egr', 'Eucgr.D02456' => 'egr', 'Eucgr.E00018' => 'egr', 'Eucgr.E01439' => 'egr', 'Eucgr.G02859' => 'egr', 'FAN01G0168' => 'fan', 'FAN01G0453' => 'fan', 'FAN01G2761' => 'fan', 'FAN02G1239' => 'fan', 'FAN03G0645' => 'fan', 'FAN03G2707' => 'fan', 'FAN03G2978' => 'fan', 'FAN04G0227' => 'fan', 'FAN06G0091' => 'fan', 'FAN06G1418' => 'fan', 'FAN06G1512' => 'fan', 'FAN06G1986' => 'fan', 'FAN06G2905' => 'fan', 'FAN06G4325' => 'fan', 'FAN08G0033' => 'fan', 'FAN09G0642' => 'fan', 'FAN10G1763' => 'fan', 'FAN10G2026' => 'fan', 'FAN10G2513' => 'fan', 'FAN10G3402' => 'fan', 'FAN10G3564' => 'fan', 'FAN10G3987' => 'fan', 'FAN13G1490' => 'fan', 'FAN14G5857' => 'fan', 'FAN18G1188' => 'fan', 'FvH4_5g00750' => 'fve', 'FvH4_6g13410' => 'fve', 'FvH4_7g11740' => 'fve', 'FvH4_7g17410' => 'fve', 'FvH4_7g18860' => 'fve', 'Glyma.01G099100' => 'gma', 'Glyma.01G142300' => 'gma', 'Glyma.03G025500' => 'gma', 'Glyma.03G069700' => 'gma', 'Glyma.03G260000' => 'gma', 'Glyma.09G269800' => 'gma', 'Glyma.10G208700' => 'gma', 'Glyma.18G220400' => 'gma', 'Glyma.20G182000' => 'gma', 'Gohir.A01G221726' => 'ghi', 'Gohir.A07G134600' => 'ghi', 'Gohir.A07G146000' => 'ghi', 'Gohir.A08G173900' => 'ghi', 'Gohir.A09G194900' => 'ghi', 'Gohir.A10G204100' => 'ghi', 'Gohir.A11G080600' => 'ghi', 'Gohir.A11G327500' => 'ghi', 'Gohir.A12G101800' => 'ghi', 'Gohir.D01G211200' => 'ghi', 'Gohir.D07G139200' => 'ghi', 'Gohir.D07G152100' => 'ghi', 'Gohir.D08G192600' => 'ghi', 'Gohir.D09G189200' => 'ghi', 'Gohir.D10G212000' => 'ghi', 'Gohir.D11G085200' => 'ghi', 'Gohir.D11G346400' => 'ghi', 'Gohir.D12G104800' => 'ghi', 'Gorai.001G151300' => 'gra', 'Gorai.001G174100' => 'gra', 'Gorai.002G257000' => 'gra', 'Gorai.004G202600' => 'gra', 'Gorai.007G090900' => 'gra', 'Gorai.007G376700' => 'gra', 'Gorai.008G114100' => 'gra', 'Gorai.011G237900' => 'gra', 'GSVIVG01005450001' => 'vvi', 'GSVIVG01016232001' => 'vvi', 'GSVIVG01026157001' => 'vvi', 'GSVIVG01027419001' => 'vvi', 'GSVIVG01027631001' => 'vvi', 'GSVIVG01034143001' => 'vvi', 'HanXRQChr03g0093921' => 'han', 'HanXRQChr04g0120001' => 'han', 'HanXRQChr04g0122561' => 'han', 'HanXRQChr09g0246851' => 'han', 'HanXRQChr10g0293311' => 'han', 'HanXRQChr13g0425231' => 'han', 'HanXRQChr16g0532571' => 'han', 'Haze_09050' => 'cav', 'Haze_15715' => 'cav', 'Haze_15716' => 'cav', 'Haze_16803' => 'cav', 'Haze_16850' => 'cav', 'Hma1.2p1_0301F.1_g118655' => 'hma', 'Hma1.2p1_0309F.1_g120590' => 'hma', 'Hma1.2p1_0936F.1_g238900' => 'hma', 'Hma1.2p1_3552F.1_g336740' => 'hma', 'HPP92_003520' => 'vpl', 'HPP92_006628' => 'vpl', 'HPP92_006645' => 'vpl', 'HPP92_014669' => 'vpl', 'HPP92_015077' => 'vpl', 'Hund16742' => 'sun', 'Hund17022' => 'sun', 'Lalb_Chr02g0152131' => 'lal', 'Lalb_Chr05g0225371' => 'lal', 'Lalb_Chr07g0189841' => 'lal', 'Lalb_Chr07g0192961' => 'lal', 'Lalb_Chr12g0208221' => 'lal', 'Lalb_Chr13g0291211' => 'lal', 'Lalb_Chr13g0291781' => 'lal', 'Lalb_Chr18g0044651' => 'lal', 'Lalb_Chr21g0313731' => 'lal', 'Lj1g0022533' => 'lja', 'Lj2A18T50' => 'lonja', 'Lj2A92G93' => 'lonja', 'Lj3A965T73' => 'lonja', 'Lj3g0000673' => 'lja', 'Lj3g0002666' => 'lja', 'Lj4g0016985' => 'lja', 'Lj5g0003625' => 'lja', 'Lj7A529G36' => 'lonja', 'Lj9A569T49' => 'lonja', 'Lj9A604T63' => 'lonja', 'Lsat_1_v5_gn_3_132060' => 'lsa', 'Lsat_1_v5_gn_4_68941' => 'lsa', 'Lsat_1_v5_gn_5_95580' => 'lsa', 'Lsat_1_v5_gn_7_161' => 'lsa', 'Lsat_1_v5_gn_7_7041' => 'lsa', 'Lsat_1_v5_gn_9_33481' => 'lsa', 'Lsat_1_v5_gn_9_68260' => 'lsa', 'Manes.01G073100' => 'mes', 'Manes.01G266300' => 'mes', 'Manes.02G033300' => 'mes', 'Manes.05G017900' => 'mes', 'Manes.05G046100' => 'mes', 'Manes.08G080900' => 'mes', 'Manes.10G049400' => 'mes', 'Mapoly0009s0186' => 'mpo', 'Mapoly0036s0118' => 'mpo', 'Mapoly0101s0046' => 'mpo', 'MBI04_g30218_MAGBIO' => 'mbi', 'MBI04_g35564_MAGBIO' => 'mbi', 'MBI12_g34011_MAGBIO' => 'mbi', 'MBI14_g04655_MAGBIO' => 'mbi', 'MCO07G653' => 'mco', 'MCO10G173' => 'mco', 'MD01G1087100' => 'mdo', 'MD01G1104200' => 'mdo', 'MD02G1205100' => 'mdo', 'MD04G1079200' => 'mdo', 'MD04G1131400' => 'mdo', 'MD07G1121600' => 'mdo', 'MD07G1157300' => 'mdo', 'MD07G1171000' => 'mdo', 'MD12G1144500' => 'mdo', 'Medtr1g094610' => 'mtr', 'Medtr4g021795' => 'mtr', 'Medtr4g023760' => 'mtr', 'Medtr7g118050' => 'mtr', 'MELO3C005582.2' => 'cme', 'MELO3C005989.2' => 'cme', 'MELO3C006192.2' => 'cme', 'MELO3C009248.2' => 'cme', 'MELO3C019817.2' => 'cme', 'Migut.B01625' => 'egut', 'Migut.B01915' => 'egut', 'Migut.F01721' => 'egut', 'Migut.J00314' => 'egut', 'MSTRG.20742' => 'ama', 'MSTRG.8134' => 'ama', 'Nitab4.5_0000096g0010' => 'nta', 'Nitab4.5_0000202g0030' => 'nta', 'Nitab4.5_0000216g0370' => 'nta', 'Nitab4.5_0000457g0230' => 'nta', 'Nitab4.5_0001702g0170' => 'nta', 'Nitab4.5_0003607g0010' => 'nta', 'Nitab4.5_0004917g0020' => 'nta', 'Nitab4.5_0007059g0010' => 'nta', 'Nitab4.5_0007184g0010' => 'nta', 'Nitab4.5_0007346g0020' => 'nta', 'Nn1g00410' => 'nnu', 'Nn1g01252' => 'nnu', 'Nn2g11168' => 'nnu', 'Nn2g13403' => 'nnu', 'Nn2g13760' => 'nnu', 'Nn4g26380' => 'nnu', 'Oeu000806.2' => 'oeu', 'Oeu005788.1' => 'oeu', 'Oeu006900.3' => 'oeu', 'Oeu007797.1' => 'oeu', 'Oeu011932.1' => 'oeu', 'Oeu022739.1' => 'oeu', 'Oeu037918.1' => 'oeu', 'Oeu055490.2' => 'oeu', 'Os01g0844400' => 'osa', 'Os02g0819100' => 'osa', 'Os03g0804300' => 'osa', 'Os05g0458000' => 'osa', 'Os07g0467800' => 'osa', 'Os12g0602200' => 'osa', 'Peaxi162Scf00013g03444' => 'pax', 'Peaxi162Scf00094g01120' => 'pax', 'Peaxi162Scf00191g01211' => 'pax', 'Peaxi162Scf00238g01110' => 'pax', 'Peaxi162Scf00330g00719' => 'pax', 'Peaxi162Scf00627g00018' => 'pax', 'PGR031G2686' => 'pgr', 'PGR042G0809' => 'pgr', 'PGR142G0193' => 'pgr', 'PGSC0003DMG400011066' => 'stu', 'PGSC0003DMG400012041' => 'stu', 'PGSC0003DMG400013678' => 'stu', 'PGSC0003DMG400023477' => 'stu', 'PGSC0003DMG400025956' => 'stu', 'PGSC0003DMG401019151' => 'stu', 'Phvul.006G116400' => 'pvu', 'Phvul.007G097300' => 'pvu', 'Phvul.010G015000' => 'pvu', 'Phvul.010G083900' => 'pvu', 'Potri.001G117100' => 'ptr', 'Potri.002G147300' => 'ptr', 'Potri.003G115600' => 'ptr', 'Potri.006G087400' => 'ptr', 'Potri.010G226100' => 'ptr', 'Potri.014G069200' => 'ptr', 'Potri.014G104000' => 'ptr', 'Potri.016G100200' => 'ptr', 'Pp3c10_20450' => 'ppa', 'Pp3c1_42400' => 'ppa', 'Pp3c3_24390' => 'ppa', 'Pp3c3_2860' => 'ppa', 'PRCOL_00003193' => 'pco', 'Prupe.2G144500' => 'ppe', 'Prupe.2G195700' => 'ppe', 'Prupe.2G209800' => 'ppe', 'Prupe.5G080000' => 'ppe', 'Prupe.6G257900' => 'ppe', 'Psat3g001160' => 'psa', 'Psat6g181880' => 'psa', 'Psat7g233720' => 'psa', 'PSO063G7587' => 'pso', 'PSO339G2145' => 'pso', 'PSO339G3369' => 'pso', 'PSO478G2747' => 'pso', 'PSO513G0140' => 'pso', 'PSO782G1614' => 'pso', 'PSO782G4889' => 'pso', 'PSO782G5485' => 'pso', 'PSO801G0241' => 'pso', 'QL07p048854' => 'qlo', 'QL08p046745' => 'qlo', 'QL08p052606' => 'qlo', 'QL08p053414' => 'qlo', 'QL08p054868' => 'qlo', 'RcHm_v2.0_Chr1g0350251' => 'rch', 'RcHm_v2.0_Chr1g0360851' => 'rch', 'RcHm_v2.0_Chr1g0362791' => 'rch', 'RcHm_v2.0_Chr3g0466281' => 'rch', 'RcHm_v2.0_Chr7g0201481' => 'rch', 'Rhsim01G0148600' => 'rsi', 'Rhsim05G0194400' => 'rsi', 'Rhsim07G0000700' => 'rsi', 'Rhsim07G0000800' => 'rsi', 'Rhsim07G0027900' => 'rsi', 'Rhsim09G0149500' => 'rsi', 'RhsimUnG0186900' => 'rsi', 'Sabra01G0089900' => 'sbr', 'Sabra02G0114700' => 'sbr', 'Sabra02G0116300' => 'sbr', 'Sabra03G0080100' => 'sbr', 'Sabra08G0024300' => 'sbr', 'Sabra10G0174300' => 'sbr', 'Sabra14G0048900' => 'sbr', 'Sabra14G0076500' => 'sbr', 'SalBow5G2513' => 'sbo', 'Sc01g0002300' => 'sci', 'Sc01g0004450' => 'sci', 'Sc06g0001680' => 'sci', 'Sc23g0003580' => 'sci', 'Sed0000913' => 'sed', 'Sed0001655' => 'sed', 'Sed0007745' => 'sed', 'Sed0010951' => 'sed', 'Sed0017599' => 'sed', 'Sed0021405' => 'sed', 'Sed0022810' => 'sed', 'SEGI_07099' => 'sgi', 'SEGI_11931' => 'sgi', 'SEGI_13187' => 'sgi', 'SEGI_29958' => 'sgi', 'SEGI_36351' => 'sgi', 'SGA_v2.0_scaffold126G33770' => 'sas', 'SGA_v2.0_scaffold153G37003' => 'sas', 'SGA_v2.0_scaffold2G01359' => 'sas', 'SGA_v2.0_scaffold5G03064' => 'sas', 'SGA_v2.0_scaffold95G28903' => 'sas', 'SHI12701' => 'shi', 'SHI26410' => 'shi', 'SHI38997' => 'shi', 'SHI53759' => 'shi', 'SHI53886' => 'shi', 'SHI54714' => 'shi', 'SMO011G0041' => 'smo', 'SMO146G0251' => 'smo', 'SMO160G0004' => 'smo', 'SMO174G0057' => 'smo', 'SMO244G0089' => 'smo', 'SMO296G0011' => 'smo', 'Solyc01g091280.3' => 'sly', 'Solyc05g047610.3' => 'sly', 'Solyc05g047640.3' => 'sly', 'Solyc05g055630.3' => 'sly', 'Solyc10g018160.2' => 'sly', 'Solyc10g084820.2' => 'sly', 'Solyc10g086565.2' => 'sly', 'Sopen01g037030' => 'spe', 'Sopen05g027920' => 'spe', 'Sopen05g034070' => 'spe', 'Sopen10g007260' => 'spe', 'Sopen10g034260' => 'spe', 'Sopen10g035950' => 'spe', 'Sp3g07710' => 'spa', 'Sp4g27420' => 'spa', 'Sp5g02450' => 'spa', 'Sp6g01280' => 'spa', 'Sp6g38480' => 'spa', 'Sp7g20780' => 'spa', 'TAR374G1413' => 'tar', 'TAR623G1777' => 'tar', 'TAR629G2370' => 'tar', 'TAR633G1759' => 'tar', 'TAR636G3387' => 'tar', 'THA.LOC104802447' => 'tha', 'THA.LOC104813916' => 'tha', 'THA.LOC104816423' => 'tha', 'THA.LOC104817246' => 'tha', 'THA.LOC104825895' => 'tha', 'Thecc.01G335200' => 'tca', 'Thecc.01G377400' => 'tca', 'Thecc.03G262200' => 'tca', 'Thecc.05G036800' => 'tca', 'Thecc.10G080500' => 'tca', 'Thecc.10G080800' => 'tca', 'Thhalv10001560m.g' => 'esa', 'Thhalv10006120m.g' => 'esa', 'Thhalv10014375m.g' => 'esa', 'Thhalv10021264m.g' => 'esa', 'Thhalv10028856m.g' => 'esa', 'TPR.G1914' => 'tpr', 'TPR.G4757' => 'tpr', 'TPR.G5595' => 'tpr', 'TWI14G0952' => 'twi', 'TWI14G1307' => 'twi', 'TWI38G2143' => 'twi', 'TWI59G0826' => 'twi', 'TWI77G0527' => 'twi', 'TWI81G0150' => 'twi', 'unitig_21.g21018' => 'ugi', 'unitig_26.g9725' => 'ugi', 'unitig_744.g24653' => 'ugi', 'unitig_749.g13778' => 'ugi', 'unitig_899.g15035' => 'ugi', 'vmacro04296' => 'vma', 'vmacro04852' => 'vma', 'vmacro13404' => 'vma', 'vmacro20169' => 'vma', 'vmacro21014' => 'vma', 'VMungo0331G0237' => 'vmu', 'VMungo0331G0706' => 'vmu', 'VMungo0331G1361' => 'vmu', 'VMungo0331G1489' => 'vmu', 'VMungo0540G1037' => 'vmu', 'VMungo0720G2487' => 'vmu', 'VMungo0720G2721' => 'vmu', 'Zm00001eb086860' => 'zma', 'Zm00001eb104760' => 'zma', 'Zm00001eb148220' => 'zma', 'Zm00001eb259030' => 'zma', 'Zm00001eb289590' => 'zma', 'Zm00001eb420150' => 'zma' ) $gf_id = 'HOM05D000968' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000968' ) $data_identifier = 'HOM05D000968' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 19, 'bol' => (int) 9, 'bra' => (int) 12, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 5, 'ccan' => (int) 7, 'cde' => (int) 5, 'cfa' => (int) 8, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 4, 'dca' => (int) 5, 'din' => (int) 5, 'dzi' => (int) 12, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 25, 'fve' => (int) 5, 'gma' => (int) 9, 'ghi' => (int) 18, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 7, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 5, 'sun' => (int) 2, 'lal' => (int) 9, 'lja' => (int) 5, 'lonja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 9, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 2, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 3, 'stu' => (int) 6, 'pvu' => (int) 4, 'ptr' => (int) 8, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 3, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 1, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 5, 'sas' => (int) 5, 'shi' => (int) 6, 'smo' => (int) 6, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 3, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420150' $species_info = array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ) $local_species = 'mtr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000968', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p31690' => 'bna', 'A03p36040' => 'bna', 'A03p53730' => 'bna', 'A04p01410' => 'bna', 'A05p05420' => 'bna', 'A05p39630' => 'bna', 'A05p39640' => 'bna', 'A09p00970' => 'bna', 'A09p53060' => 'bna', 'A10p31890' => 'bna', 'Aa31LG10G15040' => 'aar', 'Aa31LG1G21090' => 'aar', 'Aa31LG1G26900' => 'aar', 'Aa31LG3G1820' => 'aar', 'Aa31LG5G1100' => 'aar', 'Aa31LG6G4740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2265' => 'aag', 'Actinidia07998' => 'ach', 'Actinidia11266' => 'ach', 'Actinidia12682' => 'ach', 'Actinidia26479' => 'ach', 'Actinidia31406' => 'ach', 'Actinidia32437' => 'ach', 'Actinidia38862' => 'ach', 'Ah.05g174230' => 'amhyb', 'Ah.05g179070' => 'amhyb', 'Ah.05g179090' => 'amhyb', 'Ah.12g059950' => 'amhyb', 'AL3G20480' => 'aly', 'AL4G44520' => 'aly', 'AL5G43110' => 'aly', 'AL6G13890' => 'aly', 'AL6G52620' => 'aly', 'AL7G30830' => 'aly', 'Aqoxy1G00899' => 'aox', 'Aqoxy5G04333' => 'aox', 'Aqoxy7G00641' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3IZ0NN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4EF6AW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W9P8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79GA3M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C43NQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFCU6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G95YVJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCHK29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LU1UG8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX91RN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGB4B1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8DA0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9H7JI' => 'arhy', 'AT3G09320' => 'ath', 'AT3G60800' => 'ath', 'AT4G00840' => 'ath', 'AT4G22750' => 'ath', 'AT5G04270' => 'ath', 'ATR0090G003' => 'atr', 'ATR0559G349' => 'atr', 'ATR0680G261' => 'atr', 'ATR0810G048' => 'atr', 'Atru.chr12.831' => 'acertr', 'Atru.chr5.303' => 'acertr', 'Atru.chr5.748' => 'acertr', 'Atru.chr8.1999' => 'acertr', 'Atru.chr9.1436' => 'acertr', 'AUR62004211' => 'cqu', 'AUR62004548' => 'cqu', 'AUR62013637' => 'cqu', 'AUR62022662' => 'cqu', 'AUR62025777' => 'cqu', 'AUR62042386' => 'cqu', 'BcaB01g02310' => 'bca', 'BcaB01g06062' => 'bca', 'BcaB02g08975' => 'bca', 'BcaB02g08980' => 'bca', 'BcaC01g04228' => 'bca', 'BcaC01g06830' => 'bca', 'BcaC02g10186' => 'bca', 'BcaC02g12214' => 'bca', 'BcaC04g24101' => 'bca', 'BcaC05g29520' => 'bca', 'BcaC05g29661' => 'bca', 'BcaC06g32130' => 'bca', 'BcaC06g32131' => 'bca', 'BcaC07g40601' => 'bca', 'BcaC07g42641' => 'bca', 'BcaNung01038' => 'bca', 'BcaNung01676' => 'bca', 'BcaNung02480' => 'bca', 'BcaNung07376' => 'bca', 'BolC3t16146H' => 'bol', 'BolC3t16637H' => 'bol', 'BolC4t22257H' => 'bol', 'BolC4t24728H' => 'bol', 'BolC5t34517H' => 'bol', 'BolC7t45703H' => 'bol', 'BolC8t51166H' => 'bol', 'BolC9t53038H' => 'bol', 'BolC9t60000H' => 'bol', 'BraA01t01345Z' => 'bra', 'BraA01t01346Z' => 'bra', 'BraA01t01348Z' => 'bra', 'BraA03t12347Z' => 'bra', 'BraA03t12775Z' => 'bra', 'BraA03t14439Z' => 'bra', 'BraA04t15860Z' => 'bra', 'BraA05t19511Z' => 'bra', 'BraA05t22746Z' => 'bra', 'BraA09t35767Z' => 'bra', 'BraA09t40732Z' => 'bra', 'BraA10t45233Z' => 'bra', 'C03p38720' => 'bna', 'C03p43680' => 'bna', 'C04p06350' => 'bna', 'C04p31800' => 'bna', 'C05p58680' => 'bna', 'C07p52110' => 'bna', 'C08p35760' => 'bna', 'C09p01050' => 'bna', 'C09p72600' => 'bna', 'CAN.G106.2' => 'can', 'CAN.G1482.1' => 'can', 'CAN.G324.12' => 'can', 'CAN.G388.20' => 'can', 'CAN.G412.7' => 'can', 'CAN.G694.32' => 'can', 'CAN.G92.12' => 'can', 'CANSAT11G2353' => 'cansat', 'CANSAT21G1398' => 'cansat', 'CANSAT56G2456' => 'cansat', 'CANSAT56G3031' => 'cansat', 'CANSAT56G4539' => 'cansat', 'CARHR083680' => 'chi', 'CARHR171190' => 'chi', 'CARHR209010' => 'chi', 'CARHR229680' => 'chi', 'CARHR249490' => 'chi', 'Carub.0003s0844' => 'cru', 'Carub.0005s2755' => 'cru', 'Carub.0006s0322' => 'cru', 'Carub.0006s3586' => 'cru', 'Carub.0007s1855' => 'cru', 'Ca_07808_v3' => 'car', 'Ca_09535_v3' => 'car', 'Ca_10548_v3' => 'car', 'Ca_19913_v3' => 'car', 'Ca_19916_v3' => 'car', 'Ca_19975_v3' => 'car', 'CBR_g22876' => 'cbr', 'CBR_g22879' => 'cbr', 'CBR_g38491' => 'cbr', 'CBR_g54185' => 'cbr', 'CBR_g54190' => 'cbr', 'Cc02_g11020' => 'ccan', 'Cc02_g23920' => 'ccan', 'Cc02_g39860' => 'ccan', 'Cc02_g39870' => 'ccan', 'Cc03_g06760' => 'ccan', 'Cc06_g02450' => 'ccan', 'Cc09_g09450' => 'ccan', 'CDE02G1959' => 'cde', 'CDE04G0600' => 'cde', 'CDE07G1996' => 'cde', 'CDE07G2078' => 'cde', 'CDE11G0611' => 'cde', 'Cfa001683' => 'cfa', 'Cfa001734' => 'cfa', 'Cfa001737' => 'cfa', 'Cfa003751' => 'cfa', 'Cfa012019' => 'cfa', 'Cfa017353' => 'cfa', 'Cfa017732' => 'cfa', 'Cfa022464' => 'cfa', 'Ciclev10012400m.g' => 'ccl', 'Ciclev10021242m.g' => 'ccl', 'Ciclev10021302m.g' => 'ccl', 'Ciclev10021463m.g' => 'ccl', 'Ciclev10032359m.g' => 'ccl', 'CiPaw.01G081000' => 'cil', 'CiPaw.01G262500' => 'cil', 'CiPaw.01G269800' => 'cil', 'CiPaw.02G168400' => 'cil', 'CiPaw.05G119500' => 'cil', 'CiPaw.11G147300' => 'cil', 'ClCG01G003630' => 'cla', 'ClCG05G000510' => 'cla', 'ClCG05G002300' => 'cla', 'ClCG08G007650' => 'cla', 'ClCG10G021250' => 'cla', 'COL.COLO4_06218' => 'col', 'COL.COLO4_12538' => 'col', 'COL.COLO4_14775' => 'col', 'COL.COLO4_23875' => 'col', 'Cpa.g.sc141.16' => 'cpa', 'Cpa.g.sc169.16' => 'cpa', 'Cpa.g.sc244.4' => 'cpa', 'Cpa.g.sc244.5' => 'cpa', 'Cpa.g.sc29.87' => 'cpa', 'Cpa.g.sc53.115' => 'cpa', 'Cre03.g207502' => 'cre', 'Cre06.g277000' => 'cre', 'Cre09.g394050' => 'cre', 'CsaV3_3G007680' => 'csa', 'CsaV3_3G009710' => 'csa', 'CsaV3_3G034790' => 'csa', 'CsaV3_5G003750' => 'csa', 'CsaV3_6G036620' => 'csa', 'CSS0002288' => 'camsi', 'CSS0011250' => 'camsi', 'CSS0021619' => 'camsi', 'CSS0046701' => 'camsi', 'DCAR_006420' => 'dca', 'DCAR_006865' => 'dca', 'DCAR_008558' => 'dca', 'DCAR_028754' => 'dca', 'DCAR_028755' => 'dca', 'Dinv31218' => 'din', 'Dinv32371' => 'din', 'Dinv34250' => 'din', 'Dinv37156' => 'din', 'Dinv43704' => 'din', 'Duzib093G1811' => 'dzi', 'Duzib106G1622' => 'dzi', 'Duzib114G0504' => 'dzi', 'Duzib128G0338' => 'dzi', 'Duzib128G1577' => 'dzi', 'Duzib133G0104' => 'dzi', 'Duzib133G1080' => 'dzi', 'Duzib138G0324' => 'dzi', 'Duzib138G0394' => 'dzi', 'Duzib205G0122' => 'dzi', 'Duzib268G1020' => 'dzi', 'Duzib268G1359' => 'dzi', 'ECA232G3929' => 'eca', 'ECA236G2210' => 'eca', 'ECA236G2287' => 'eca', 'ECA240G4568' => 'eca', 'ECA247G0894' => 'eca', 'EL10Ac1g00200' => 'bvu', 'EL10Ac1g00886' => 'bvu', 'EL10As1g23091' => 'bvu', 'EL10As1g23092' => 'bvu', 'Eucgr.A01284' => 'egr', 'Eucgr.A01285' => 'egr', 'Eucgr.D02456' => 'egr', 'Eucgr.E00018' => 'egr', 'Eucgr.E01439' => 'egr', 'Eucgr.G02859' => 'egr', 'FAN01G0168' => 'fan', 'FAN01G0453' => 'fan', 'FAN01G2761' => 'fan', 'FAN02G1239' => 'fan', 'FAN03G0645' => 'fan', 'FAN03G2707' => 'fan', 'FAN03G2978' => 'fan', 'FAN04G0227' => 'fan', 'FAN06G0091' => 'fan', 'FAN06G1418' => 'fan', 'FAN06G1512' => 'fan', 'FAN06G1986' => 'fan', 'FAN06G2905' => 'fan', 'FAN06G4325' => 'fan', 'FAN08G0033' => 'fan', 'FAN09G0642' => 'fan', 'FAN10G1763' => 'fan', 'FAN10G2026' => 'fan', 'FAN10G2513' => 'fan', 'FAN10G3402' => 'fan', 'FAN10G3564' => 'fan', 'FAN10G3987' => 'fan', 'FAN13G1490' => 'fan', 'FAN14G5857' => 'fan', 'FAN18G1188' => 'fan', 'FvH4_5g00750' => 'fve', 'FvH4_6g13410' => 'fve', 'FvH4_7g11740' => 'fve', 'FvH4_7g17410' => 'fve', 'FvH4_7g18860' => 'fve', 'Glyma.01G099100' => 'gma', 'Glyma.01G142300' => 'gma', 'Glyma.03G025500' => 'gma', 'Glyma.03G069700' => 'gma', 'Glyma.03G260000' => 'gma', 'Glyma.09G269800' => 'gma', 'Glyma.10G208700' => 'gma', 'Glyma.18G220400' => 'gma', 'Glyma.20G182000' => 'gma', 'Gohir.A01G221726' => 'ghi', 'Gohir.A07G134600' => 'ghi', 'Gohir.A07G146000' => 'ghi', 'Gohir.A08G173900' => 'ghi', 'Gohir.A09G194900' => 'ghi', 'Gohir.A10G204100' => 'ghi', 'Gohir.A11G080600' => 'ghi', 'Gohir.A11G327500' => 'ghi', 'Gohir.A12G101800' => 'ghi', 'Gohir.D01G211200' => 'ghi', 'Gohir.D07G139200' => 'ghi', 'Gohir.D07G152100' => 'ghi', 'Gohir.D08G192600' => 'ghi', 'Gohir.D09G189200' => 'ghi', 'Gohir.D10G212000' => 'ghi', 'Gohir.D11G085200' => 'ghi', 'Gohir.D11G346400' => 'ghi', 'Gohir.D12G104800' => 'ghi', 'Gorai.001G151300' => 'gra', 'Gorai.001G174100' => 'gra', 'Gorai.002G257000' => 'gra', 'Gorai.004G202600' => 'gra', 'Gorai.007G090900' => 'gra', 'Gorai.007G376700' => 'gra', 'Gorai.008G114100' => 'gra', 'Gorai.011G237900' => 'gra', 'GSVIVG01005450001' => 'vvi', 'GSVIVG01016232001' => 'vvi', 'GSVIVG01026157001' => 'vvi', 'GSVIVG01027419001' => 'vvi', 'GSVIVG01027631001' => 'vvi', 'GSVIVG01034143001' => 'vvi', 'HanXRQChr03g0093921' => 'han', 'HanXRQChr04g0120001' => 'han', 'HanXRQChr04g0122561' => 'han', 'HanXRQChr09g0246851' => 'han', 'HanXRQChr10g0293311' => 'han', 'HanXRQChr13g0425231' => 'han', 'HanXRQChr16g0532571' => 'han', 'Haze_09050' => 'cav', 'Haze_15715' => 'cav', 'Haze_15716' => 'cav', 'Haze_16803' => 'cav', 'Haze_16850' => 'cav', 'Hma1.2p1_0301F.1_g118655' => 'hma', 'Hma1.2p1_0309F.1_g120590' => 'hma', 'Hma1.2p1_0936F.1_g238900' => 'hma', 'Hma1.2p1_3552F.1_g336740' => 'hma', 'HPP92_003520' => 'vpl', 'HPP92_006628' => 'vpl', 'HPP92_006645' => 'vpl', 'HPP92_014669' => 'vpl', 'HPP92_015077' => 'vpl', 'Hund16742' => 'sun', 'Hund17022' => 'sun', 'Lalb_Chr02g0152131' => 'lal', 'Lalb_Chr05g0225371' => 'lal', 'Lalb_Chr07g0189841' => 'lal', 'Lalb_Chr07g0192961' => 'lal', 'Lalb_Chr12g0208221' => 'lal', 'Lalb_Chr13g0291211' => 'lal', 'Lalb_Chr13g0291781' => 'lal', 'Lalb_Chr18g0044651' => 'lal', 'Lalb_Chr21g0313731' => 'lal', 'Lj1g0022533' => 'lja', 'Lj2A18T50' => 'lonja', 'Lj2A92G93' => 'lonja', 'Lj3A965T73' => 'lonja', 'Lj3g0000673' => 'lja', 'Lj3g0002666' => 'lja', 'Lj4g0016985' => 'lja', 'Lj5g0003625' => 'lja', 'Lj7A529G36' => 'lonja', 'Lj9A569T49' => 'lonja', 'Lj9A604T63' => 'lonja', 'Lsat_1_v5_gn_3_132060' => 'lsa', 'Lsat_1_v5_gn_4_68941' => 'lsa', 'Lsat_1_v5_gn_5_95580' => 'lsa', 'Lsat_1_v5_gn_7_161' => 'lsa', 'Lsat_1_v5_gn_7_7041' => 'lsa', 'Lsat_1_v5_gn_9_33481' => 'lsa', 'Lsat_1_v5_gn_9_68260' => 'lsa', 'Manes.01G073100' => 'mes', 'Manes.01G266300' => 'mes', 'Manes.02G033300' => 'mes', 'Manes.05G017900' => 'mes', 'Manes.05G046100' => 'mes', 'Manes.08G080900' => 'mes', 'Manes.10G049400' => 'mes', 'Mapoly0009s0186' => 'mpo', 'Mapoly0036s0118' => 'mpo', 'Mapoly0101s0046' => 'mpo', 'MBI04_g30218_MAGBIO' => 'mbi', 'MBI04_g35564_MAGBIO' => 'mbi', 'MBI12_g34011_MAGBIO' => 'mbi', 'MBI14_g04655_MAGBIO' => 'mbi', 'MCO07G653' => 'mco', 'MCO10G173' => 'mco', 'MD01G1087100' => 'mdo', 'MD01G1104200' => 'mdo', 'MD02G1205100' => 'mdo', 'MD04G1079200' => 'mdo', 'MD04G1131400' => 'mdo', 'MD07G1121600' => 'mdo', 'MD07G1157300' => 'mdo', 'MD07G1171000' => 'mdo', 'MD12G1144500' => 'mdo', 'Medtr1g094610' => 'mtr', 'Medtr4g021795' => 'mtr', 'Medtr4g023760' => 'mtr', 'Medtr7g118050' => 'mtr', 'MELO3C005582.2' => 'cme', 'MELO3C005989.2' => 'cme', 'MELO3C006192.2' => 'cme', 'MELO3C009248.2' => 'cme', 'MELO3C019817.2' => 'cme', 'Migut.B01625' => 'egut', 'Migut.B01915' => 'egut', 'Migut.F01721' => 'egut', 'Migut.J00314' => 'egut', 'MSTRG.20742' => 'ama', 'MSTRG.8134' => 'ama', 'Nitab4.5_0000096g0010' => 'nta', 'Nitab4.5_0000202g0030' => 'nta', 'Nitab4.5_0000216g0370' => 'nta', 'Nitab4.5_0000457g0230' => 'nta', 'Nitab4.5_0001702g0170' => 'nta', 'Nitab4.5_0003607g0010' => 'nta', 'Nitab4.5_0004917g0020' => 'nta', 'Nitab4.5_0007059g0010' => 'nta', 'Nitab4.5_0007184g0010' => 'nta', 'Nitab4.5_0007346g0020' => 'nta', 'Nn1g00410' => 'nnu', 'Nn1g01252' => 'nnu', 'Nn2g11168' => 'nnu', 'Nn2g13403' => 'nnu', 'Nn2g13760' => 'nnu', 'Nn4g26380' => 'nnu', 'Oeu000806.2' => 'oeu', 'Oeu005788.1' => 'oeu', 'Oeu006900.3' => 'oeu', 'Oeu007797.1' => 'oeu', 'Oeu011932.1' => 'oeu', 'Oeu022739.1' => 'oeu', 'Oeu037918.1' => 'oeu', 'Oeu055490.2' => 'oeu', 'Os01g0844400' => 'osa', 'Os02g0819100' => 'osa', 'Os03g0804300' => 'osa', 'Os05g0458000' => 'osa', 'Os07g0467800' => 'osa', 'Os12g0602200' => 'osa', 'Peaxi162Scf00013g03444' => 'pax', 'Peaxi162Scf00094g01120' => 'pax', 'Peaxi162Scf00191g01211' => 'pax', 'Peaxi162Scf00238g01110' => 'pax', 'Peaxi162Scf00330g00719' => 'pax', 'Peaxi162Scf00627g00018' => 'pax', 'PGR031G2686' => 'pgr', 'PGR042G0809' => 'pgr', 'PGR142G0193' => 'pgr', 'PGSC0003DMG400011066' => 'stu', 'PGSC0003DMG400012041' => 'stu', 'PGSC0003DMG400013678' => 'stu', 'PGSC0003DMG400023477' => 'stu', 'PGSC0003DMG400025956' => 'stu', 'PGSC0003DMG401019151' => 'stu', 'Phvul.006G116400' => 'pvu', 'Phvul.007G097300' => 'pvu', 'Phvul.010G015000' => 'pvu', 'Phvul.010G083900' => 'pvu', 'Potri.001G117100' => 'ptr', 'Potri.002G147300' => 'ptr', 'Potri.003G115600' => 'ptr', 'Potri.006G087400' => 'ptr', 'Potri.010G226100' => 'ptr', 'Potri.014G069200' => 'ptr', 'Potri.014G104000' => 'ptr', 'Potri.016G100200' => 'ptr', 'Pp3c10_20450' => 'ppa', 'Pp3c1_42400' => 'ppa', 'Pp3c3_24390' => 'ppa', 'Pp3c3_2860' => 'ppa', 'PRCOL_00003193' => 'pco', 'Prupe.2G144500' => 'ppe', 'Prupe.2G195700' => 'ppe', 'Prupe.2G209800' => 'ppe', 'Prupe.5G080000' => 'ppe', 'Prupe.6G257900' => 'ppe', 'Psat3g001160' => 'psa', 'Psat6g181880' => 'psa', 'Psat7g233720' => 'psa', 'PSO063G7587' => 'pso', 'PSO339G2145' => 'pso', 'PSO339G3369' => 'pso', 'PSO478G2747' => 'pso', 'PSO513G0140' => 'pso', 'PSO782G1614' => 'pso', 'PSO782G4889' => 'pso', 'PSO782G5485' => 'pso', 'PSO801G0241' => 'pso', 'QL07p048854' => 'qlo', 'QL08p046745' => 'qlo', 'QL08p052606' => 'qlo', 'QL08p053414' => 'qlo', 'QL08p054868' => 'qlo', 'RcHm_v2.0_Chr1g0350251' => 'rch', 'RcHm_v2.0_Chr1g0360851' => 'rch', 'RcHm_v2.0_Chr1g0362791' => 'rch', 'RcHm_v2.0_Chr3g0466281' => 'rch', 'RcHm_v2.0_Chr7g0201481' => 'rch', 'Rhsim01G0148600' => 'rsi', 'Rhsim05G0194400' => 'rsi', 'Rhsim07G0000700' => 'rsi', 'Rhsim07G0000800' => 'rsi', 'Rhsim07G0027900' => 'rsi', 'Rhsim09G0149500' => 'rsi', 'RhsimUnG0186900' => 'rsi', 'Sabra01G0089900' => 'sbr', 'Sabra02G0114700' => 'sbr', 'Sabra02G0116300' => 'sbr', 'Sabra03G0080100' => 'sbr', 'Sabra08G0024300' => 'sbr', 'Sabra10G0174300' => 'sbr', 'Sabra14G0048900' => 'sbr', 'Sabra14G0076500' => 'sbr', 'SalBow5G2513' => 'sbo', 'Sc01g0002300' => 'sci', 'Sc01g0004450' => 'sci', 'Sc06g0001680' => 'sci', 'Sc23g0003580' => 'sci', 'Sed0000913' => 'sed', 'Sed0001655' => 'sed', 'Sed0007745' => 'sed', 'Sed0010951' => 'sed', 'Sed0017599' => 'sed', 'Sed0021405' => 'sed', 'Sed0022810' => 'sed', 'SEGI_07099' => 'sgi', 'SEGI_11931' => 'sgi', 'SEGI_13187' => 'sgi', 'SEGI_29958' => 'sgi', 'SEGI_36351' => 'sgi', 'SGA_v2.0_scaffold126G33770' => 'sas', 'SGA_v2.0_scaffold153G37003' => 'sas', 'SGA_v2.0_scaffold2G01359' => 'sas', 'SGA_v2.0_scaffold5G03064' => 'sas', 'SGA_v2.0_scaffold95G28903' => 'sas', 'SHI12701' => 'shi', 'SHI26410' => 'shi', 'SHI38997' => 'shi', 'SHI53759' => 'shi', 'SHI53886' => 'shi', 'SHI54714' => 'shi', 'SMO011G0041' => 'smo', 'SMO146G0251' => 'smo', 'SMO160G0004' => 'smo', 'SMO174G0057' => 'smo', 'SMO244G0089' => 'smo', 'SMO296G0011' => 'smo', 'Solyc01g091280.3' => 'sly', 'Solyc05g047610.3' => 'sly', 'Solyc05g047640.3' => 'sly', 'Solyc05g055630.3' => 'sly', 'Solyc10g018160.2' => 'sly', 'Solyc10g084820.2' => 'sly', 'Solyc10g086565.2' => 'sly', 'Sopen01g037030' => 'spe', 'Sopen05g027920' => 'spe', 'Sopen05g034070' => 'spe', 'Sopen10g007260' => 'spe', 'Sopen10g034260' => 'spe', 'Sopen10g035950' => 'spe', 'Sp3g07710' => 'spa', 'Sp4g27420' => 'spa', 'Sp5g02450' => 'spa', 'Sp6g01280' => 'spa', 'Sp6g38480' => 'spa', 'Sp7g20780' => 'spa', 'TAR374G1413' => 'tar', 'TAR623G1777' => 'tar', 'TAR629G2370' => 'tar', 'TAR633G1759' => 'tar', 'TAR636G3387' => 'tar', 'THA.LOC104802447' => 'tha', 'THA.LOC104813916' => 'tha', 'THA.LOC104816423' => 'tha', 'THA.LOC104817246' => 'tha', 'THA.LOC104825895' => 'tha', 'Thecc.01G335200' => 'tca', 'Thecc.01G377400' => 'tca', 'Thecc.03G262200' => 'tca', 'Thecc.05G036800' => 'tca', 'Thecc.10G080500' => 'tca', 'Thecc.10G080800' => 'tca', 'Thhalv10001560m.g' => 'esa', 'Thhalv10006120m.g' => 'esa', 'Thhalv10014375m.g' => 'esa', 'Thhalv10021264m.g' => 'esa', 'Thhalv10028856m.g' => 'esa', 'TPR.G1914' => 'tpr', 'TPR.G4757' => 'tpr', 'TPR.G5595' => 'tpr', 'TWI14G0952' => 'twi', 'TWI14G1307' => 'twi', 'TWI38G2143' => 'twi', 'TWI59G0826' => 'twi', 'TWI77G0527' => 'twi', 'TWI81G0150' => 'twi', 'unitig_21.g21018' => 'ugi', 'unitig_26.g9725' => 'ugi', 'unitig_744.g24653' => 'ugi', 'unitig_749.g13778' => 'ugi', 'unitig_899.g15035' => 'ugi', 'vmacro04296' => 'vma', 'vmacro04852' => 'vma', 'vmacro13404' => 'vma', 'vmacro20169' => 'vma', 'vmacro21014' => 'vma', 'VMungo0331G0237' => 'vmu', 'VMungo0331G0706' => 'vmu', 'VMungo0331G1361' => 'vmu', 'VMungo0331G1489' => 'vmu', 'VMungo0540G1037' => 'vmu', 'VMungo0720G2487' => 'vmu', 'VMungo0720G2721' => 'vmu', 'Zm00001eb086860' => 'zma', 'Zm00001eb104760' => 'zma', 'Zm00001eb148220' => 'zma', 'Zm00001eb259030' => 'zma', 'Zm00001eb289590' => 'zma', 'Zm00001eb420150' => 'zma' ), 'gf_id' => 'HOM05D000968', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000968' ), 'data_identifier' => 'HOM05D000968', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000968', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p31690' => 'bna', 'A03p36040' => 'bna', 'A03p53730' => 'bna', 'A04p01410' => 'bna', 'A05p05420' => 'bna', 'A05p39630' => 'bna', 'A05p39640' => 'bna', 'A09p00970' => 'bna', 'A09p53060' => 'bna', 'A10p31890' => 'bna', 'Aa31LG10G15040' => 'aar', 'Aa31LG1G21090' => 'aar', 'Aa31LG1G26900' => 'aar', 'Aa31LG3G1820' => 'aar', 'Aa31LG5G1100' => 'aar', 'Aa31LG6G4740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2265' => 'aag', 'Actinidia07998' => 'ach', 'Actinidia11266' => 'ach', 'Actinidia12682' => 'ach', 'Actinidia26479' => 'ach', 'Actinidia31406' => 'ach', 'Actinidia32437' => 'ach', 'Actinidia38862' => 'ach', 'Ah.05g174230' => 'amhyb', 'Ah.05g179070' => 'amhyb', 'Ah.05g179090' => 'amhyb', 'Ah.12g059950' => 'amhyb', 'AL3G20480' => 'aly', 'AL4G44520' => 'aly', 'AL5G43110' => 'aly', 'AL6G13890' => 'aly', 'AL6G52620' => 'aly', 'AL7G30830' => 'aly', 'Aqoxy1G00899' => 'aox', 'Aqoxy5G04333' => 'aox', 'Aqoxy7G00641' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3IZ0NN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4EF6AW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W9P8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79GA3M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C43NQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFCU6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G95YVJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCHK29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LU1UG8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX91RN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGB4B1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8DA0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9H7JI' => 'arhy', 'AT3G09320' => 'ath', 'AT3G60800' => 'ath', 'AT4G00840' => 'ath', 'AT4G22750' => 'ath', 'AT5G04270' => 'ath', 'ATR0090G003' => 'atr', 'ATR0559G349' => 'atr', 'ATR0680G261' => 'atr', 'ATR0810G048' => 'atr', 'Atru.chr12.831' => 'acertr', 'Atru.chr5.303' => 'acertr', 'Atru.chr5.748' => 'acertr', 'Atru.chr8.1999' => 'acertr', 'Atru.chr9.1436' => 'acertr', 'AUR62004211' => 'cqu', 'AUR62004548' => 'cqu', 'AUR62013637' => 'cqu', 'AUR62022662' => 'cqu', 'AUR62025777' => 'cqu', 'AUR62042386' => 'cqu', 'BcaB01g02310' => 'bca', 'BcaB01g06062' => 'bca', 'BcaB02g08975' => 'bca', 'BcaB02g08980' => 'bca', 'BcaC01g04228' => 'bca', 'BcaC01g06830' => 'bca', 'BcaC02g10186' => 'bca', 'BcaC02g12214' => 'bca', 'BcaC04g24101' => 'bca', 'BcaC05g29520' => 'bca', 'BcaC05g29661' => 'bca', 'BcaC06g32130' => 'bca', 'BcaC06g32131' => 'bca', 'BcaC07g40601' => 'bca', 'BcaC07g42641' => 'bca', 'BcaNung01038' => 'bca', 'BcaNung01676' => 'bca', 'BcaNung02480' => 'bca', 'BcaNung07376' => 'bca', 'BolC3t16146H' => 'bol', 'BolC3t16637H' => 'bol', 'BolC4t22257H' => 'bol', 'BolC4t24728H' => 'bol', 'BolC5t34517H' => 'bol', 'BolC7t45703H' => 'bol', 'BolC8t51166H' => 'bol', 'BolC9t53038H' => 'bol', 'BolC9t60000H' => 'bol', 'BraA01t01345Z' => 'bra', 'BraA01t01346Z' => 'bra', 'BraA01t01348Z' => 'bra', 'BraA03t12347Z' => 'bra', 'BraA03t12775Z' => 'bra', 'BraA03t14439Z' => 'bra', 'BraA04t15860Z' => 'bra', 'BraA05t19511Z' => 'bra', 'BraA05t22746Z' => 'bra', 'BraA09t35767Z' => 'bra', 'BraA09t40732Z' => 'bra', 'BraA10t45233Z' => 'bra', 'C03p38720' => 'bna', 'C03p43680' => 'bna', 'C04p06350' => 'bna', 'C04p31800' => 'bna', 'C05p58680' => 'bna', 'C07p52110' => 'bna', 'C08p35760' => 'bna', 'C09p01050' => 'bna', 'C09p72600' => 'bna', 'CAN.G106.2' => 'can', 'CAN.G1482.1' => 'can', 'CAN.G324.12' => 'can', 'CAN.G388.20' => 'can', 'CAN.G412.7' => 'can', 'CAN.G694.32' => 'can', 'CAN.G92.12' => 'can', 'CANSAT11G2353' => 'cansat', 'CANSAT21G1398' => 'cansat', 'CANSAT56G2456' => 'cansat', 'CANSAT56G3031' => 'cansat', 'CANSAT56G4539' => 'cansat', 'CARHR083680' => 'chi', 'CARHR171190' => 'chi', 'CARHR209010' => 'chi', 'CARHR229680' => 'chi', 'CARHR249490' => 'chi', 'Carub.0003s0844' => 'cru', 'Carub.0005s2755' => 'cru', 'Carub.0006s0322' => 'cru', 'Carub.0006s3586' => 'cru', 'Carub.0007s1855' => 'cru', 'Ca_07808_v3' => 'car', 'Ca_09535_v3' => 'car', 'Ca_10548_v3' => 'car', 'Ca_19913_v3' => 'car', 'Ca_19916_v3' => 'car', 'Ca_19975_v3' => 'car', 'CBR_g22876' => 'cbr', 'CBR_g22879' => 'cbr', 'CBR_g38491' => 'cbr', 'CBR_g54185' => 'cbr', 'CBR_g54190' => 'cbr', 'Cc02_g11020' => 'ccan', 'Cc02_g23920' => 'ccan', 'Cc02_g39860' => 'ccan', 'Cc02_g39870' => 'ccan', 'Cc03_g06760' => 'ccan', 'Cc06_g02450' => 'ccan', 'Cc09_g09450' => 'ccan', 'CDE02G1959' => 'cde', 'CDE04G0600' => 'cde', 'CDE07G1996' => 'cde', 'CDE07G2078' => 'cde', 'CDE11G0611' => 'cde', 'Cfa001683' => 'cfa', 'Cfa001734' => 'cfa', 'Cfa001737' => 'cfa', 'Cfa003751' => 'cfa', 'Cfa012019' => 'cfa', 'Cfa017353' => 'cfa', 'Cfa017732' => 'cfa', 'Cfa022464' => 'cfa', 'Ciclev10012400m.g' => 'ccl', 'Ciclev10021242m.g' => 'ccl', 'Ciclev10021302m.g' => 'ccl', 'Ciclev10021463m.g' => 'ccl', 'Ciclev10032359m.g' => 'ccl', 'CiPaw.01G081000' => 'cil', 'CiPaw.01G262500' => 'cil', 'CiPaw.01G269800' => 'cil', 'CiPaw.02G168400' => 'cil', 'CiPaw.05G119500' => 'cil', 'CiPaw.11G147300' => 'cil', 'ClCG01G003630' => 'cla', 'ClCG05G000510' => 'cla', 'ClCG05G002300' => 'cla', 'ClCG08G007650' => 'cla', 'ClCG10G021250' => 'cla', 'COL.COLO4_06218' => 'col', 'COL.COLO4_12538' => 'col', 'COL.COLO4_14775' => 'col', 'COL.COLO4_23875' => 'col', 'Cpa.g.sc141.16' => 'cpa', 'Cpa.g.sc169.16' => 'cpa', 'Cpa.g.sc244.4' => 'cpa', 'Cpa.g.sc244.5' => 'cpa', 'Cpa.g.sc29.87' => 'cpa', 'Cpa.g.sc53.115' => 'cpa', 'Cre03.g207502' => 'cre', 'Cre06.g277000' => 'cre', 'Cre09.g394050' => 'cre', 'CsaV3_3G007680' => 'csa', 'CsaV3_3G009710' => 'csa', 'CsaV3_3G034790' => 'csa', 'CsaV3_5G003750' => 'csa', 'CsaV3_6G036620' => 'csa', 'CSS0002288' => 'camsi', 'CSS0011250' => 'camsi', 'CSS0021619' => 'camsi', 'CSS0046701' => 'camsi', 'DCAR_006420' => 'dca', 'DCAR_006865' => 'dca', 'DCAR_008558' => 'dca', 'DCAR_028754' => 'dca', 'DCAR_028755' => 'dca', 'Dinv31218' => 'din', 'Dinv32371' => 'din', 'Dinv34250' => 'din', 'Dinv37156' => 'din', 'Dinv43704' => 'din', 'Duzib093G1811' => 'dzi', 'Duzib106G1622' => 'dzi', 'Duzib114G0504' => 'dzi', 'Duzib128G0338' => 'dzi', 'Duzib128G1577' => 'dzi', 'Duzib133G0104' => 'dzi', 'Duzib133G1080' => 'dzi', 'Duzib138G0324' => 'dzi', 'Duzib138G0394' => 'dzi', 'Duzib205G0122' => 'dzi', 'Duzib268G1020' => 'dzi', 'Duzib268G1359' => 'dzi', 'ECA232G3929' => 'eca', 'ECA236G2210' => 'eca', 'ECA236G2287' => 'eca', 'ECA240G4568' => 'eca', 'ECA247G0894' => 'eca', 'EL10Ac1g00200' => 'bvu', 'EL10Ac1g00886' => 'bvu', 'EL10As1g23091' => 'bvu', 'EL10As1g23092' => 'bvu', 'Eucgr.A01284' => 'egr', 'Eucgr.A01285' => 'egr', 'Eucgr.D02456' => 'egr', 'Eucgr.E00018' => 'egr', 'Eucgr.E01439' => 'egr', 'Eucgr.G02859' => 'egr', 'FAN01G0168' => 'fan', 'FAN01G0453' => 'fan', 'FAN01G2761' => 'fan', 'FAN02G1239' => 'fan', 'FAN03G0645' => 'fan', 'FAN03G2707' => 'fan', 'FAN03G2978' => 'fan', 'FAN04G0227' => 'fan', 'FAN06G0091' => 'fan', 'FAN06G1418' => 'fan', 'FAN06G1512' => 'fan', 'FAN06G1986' => 'fan', 'FAN06G2905' => 'fan', 'FAN06G4325' => 'fan', 'FAN08G0033' => 'fan', 'FAN09G0642' => 'fan', 'FAN10G1763' => 'fan', 'FAN10G2026' => 'fan', 'FAN10G2513' => 'fan', 'FAN10G3402' => 'fan', 'FAN10G3564' => 'fan', 'FAN10G3987' => 'fan', 'FAN13G1490' => 'fan', 'FAN14G5857' => 'fan', 'FAN18G1188' => 'fan', 'FvH4_5g00750' => 'fve', 'FvH4_6g13410' => 'fve', 'FvH4_7g11740' => 'fve', 'FvH4_7g17410' => 'fve', 'FvH4_7g18860' => 'fve', 'Glyma.01G099100' => 'gma', 'Glyma.01G142300' => 'gma', 'Glyma.03G025500' => 'gma', 'Glyma.03G069700' => 'gma', 'Glyma.03G260000' => 'gma', 'Glyma.09G269800' => 'gma', 'Glyma.10G208700' => 'gma', 'Glyma.18G220400' => 'gma', 'Glyma.20G182000' => 'gma', 'Gohir.A01G221726' => 'ghi', 'Gohir.A07G134600' => 'ghi', 'Gohir.A07G146000' => 'ghi', 'Gohir.A08G173900' => 'ghi', 'Gohir.A09G194900' => 'ghi', 'Gohir.A10G204100' => 'ghi', 'Gohir.A11G080600' => 'ghi', 'Gohir.A11G327500' => 'ghi', 'Gohir.A12G101800' => 'ghi', 'Gohir.D01G211200' => 'ghi', 'Gohir.D07G139200' => 'ghi', 'Gohir.D07G152100' => 'ghi', 'Gohir.D08G192600' => 'ghi', 'Gohir.D09G189200' => 'ghi', 'Gohir.D10G212000' => 'ghi', 'Gohir.D11G085200' => 'ghi', 'Gohir.D11G346400' => 'ghi', 'Gohir.D12G104800' => 'ghi', 'Gorai.001G151300' => 'gra', 'Gorai.001G174100' => 'gra', 'Gorai.002G257000' => 'gra', 'Gorai.004G202600' => 'gra', 'Gorai.007G090900' => 'gra', 'Gorai.007G376700' => 'gra', 'Gorai.008G114100' => 'gra', 'Gorai.011G237900' => 'gra', 'GSVIVG01005450001' => 'vvi', 'GSVIVG01016232001' => 'vvi', 'GSVIVG01026157001' => 'vvi', 'GSVIVG01027419001' => 'vvi', 'GSVIVG01027631001' => 'vvi', 'GSVIVG01034143001' => 'vvi', 'HanXRQChr03g0093921' => 'han', 'HanXRQChr04g0120001' => 'han', 'HanXRQChr04g0122561' => 'han', 'HanXRQChr09g0246851' => 'han', 'HanXRQChr10g0293311' => 'han', 'HanXRQChr13g0425231' => 'han', 'HanXRQChr16g0532571' => 'han', 'Haze_09050' => 'cav', 'Haze_15715' => 'cav', 'Haze_15716' => 'cav', 'Haze_16803' => 'cav', 'Haze_16850' => 'cav', 'Hma1.2p1_0301F.1_g118655' => 'hma', 'Hma1.2p1_0309F.1_g120590' => 'hma', 'Hma1.2p1_0936F.1_g238900' => 'hma', 'Hma1.2p1_3552F.1_g336740' => 'hma', 'HPP92_003520' => 'vpl', 'HPP92_006628' => 'vpl', 'HPP92_006645' => 'vpl', 'HPP92_014669' => 'vpl', 'HPP92_015077' => 'vpl', 'Hund16742' => 'sun', 'Hund17022' => 'sun', 'Lalb_Chr02g0152131' => 'lal', 'Lalb_Chr05g0225371' => 'lal', 'Lalb_Chr07g0189841' => 'lal', 'Lalb_Chr07g0192961' => 'lal', 'Lalb_Chr12g0208221' => 'lal', 'Lalb_Chr13g0291211' => 'lal', 'Lalb_Chr13g0291781' => 'lal', 'Lalb_Chr18g0044651' => 'lal', 'Lalb_Chr21g0313731' => 'lal', 'Lj1g0022533' => 'lja', 'Lj2A18T50' => 'lonja', 'Lj2A92G93' => 'lonja', 'Lj3A965T73' => 'lonja', 'Lj3g0000673' => 'lja', 'Lj3g0002666' => 'lja', 'Lj4g0016985' => 'lja', 'Lj5g0003625' => 'lja', 'Lj7A529G36' => 'lonja', 'Lj9A569T49' => 'lonja', 'Lj9A604T63' => 'lonja', 'Lsat_1_v5_gn_3_132060' => 'lsa', 'Lsat_1_v5_gn_4_68941' => 'lsa', 'Lsat_1_v5_gn_5_95580' => 'lsa', 'Lsat_1_v5_gn_7_161' => 'lsa', 'Lsat_1_v5_gn_7_7041' => 'lsa', 'Lsat_1_v5_gn_9_33481' => 'lsa', 'Lsat_1_v5_gn_9_68260' => 'lsa', 'Manes.01G073100' => 'mes', 'Manes.01G266300' => 'mes', 'Manes.02G033300' => 'mes', 'Manes.05G017900' => 'mes', 'Manes.05G046100' => 'mes', 'Manes.08G080900' => 'mes', 'Manes.10G049400' => 'mes', 'Mapoly0009s0186' => 'mpo', 'Mapoly0036s0118' => 'mpo', 'Mapoly0101s0046' => 'mpo', 'MBI04_g30218_MAGBIO' => 'mbi', 'MBI04_g35564_MAGBIO' => 'mbi', 'MBI12_g34011_MAGBIO' => 'mbi', 'MBI14_g04655_MAGBIO' => 'mbi', 'MCO07G653' => 'mco', 'MCO10G173' => 'mco', 'MD01G1087100' => 'mdo', 'MD01G1104200' => 'mdo', 'MD02G1205100' => 'mdo', 'MD04G1079200' => 'mdo', 'MD04G1131400' => 'mdo', 'MD07G1121600' => 'mdo', 'MD07G1157300' => 'mdo', 'MD07G1171000' => 'mdo', 'MD12G1144500' => 'mdo', 'Medtr1g094610' => 'mtr', 'Medtr4g021795' => 'mtr', 'Medtr4g023760' => 'mtr', 'Medtr7g118050' => 'mtr', 'MELO3C005582.2' => 'cme', 'MELO3C005989.2' => 'cme', 'MELO3C006192.2' => 'cme', 'MELO3C009248.2' => 'cme', 'MELO3C019817.2' => 'cme', 'Migut.B01625' => 'egut', 'Migut.B01915' => 'egut', 'Migut.F01721' => 'egut', 'Migut.J00314' => 'egut', 'MSTRG.20742' => 'ama', 'MSTRG.8134' => 'ama', 'Nitab4.5_0000096g0010' => 'nta', 'Nitab4.5_0000202g0030' => 'nta', 'Nitab4.5_0000216g0370' => 'nta', 'Nitab4.5_0000457g0230' => 'nta', 'Nitab4.5_0001702g0170' => 'nta', 'Nitab4.5_0003607g0010' => 'nta', 'Nitab4.5_0004917g0020' => 'nta', 'Nitab4.5_0007059g0010' => 'nta', 'Nitab4.5_0007184g0010' => 'nta', 'Nitab4.5_0007346g0020' => 'nta', 'Nn1g00410' => 'nnu', 'Nn1g01252' => 'nnu', 'Nn2g11168' => 'nnu', 'Nn2g13403' => 'nnu', 'Nn2g13760' => 'nnu', 'Nn4g26380' => 'nnu', 'Oeu000806.2' => 'oeu', 'Oeu005788.1' => 'oeu', 'Oeu006900.3' => 'oeu', 'Oeu007797.1' => 'oeu', 'Oeu011932.1' => 'oeu', 'Oeu022739.1' => 'oeu', 'Oeu037918.1' => 'oeu', 'Oeu055490.2' => 'oeu', 'Os01g0844400' => 'osa', 'Os02g0819100' => 'osa', 'Os03g0804300' => 'osa', 'Os05g0458000' => 'osa', 'Os07g0467800' => 'osa', 'Os12g0602200' => 'osa', 'Peaxi162Scf00013g03444' => 'pax', 'Peaxi162Scf00094g01120' => 'pax', 'Peaxi162Scf00191g01211' => 'pax', 'Peaxi162Scf00238g01110' => 'pax', 'Peaxi162Scf00330g00719' => 'pax', 'Peaxi162Scf00627g00018' => 'pax', 'PGR031G2686' => 'pgr', 'PGR042G0809' => 'pgr', 'PGR142G0193' => 'pgr', 'PGSC0003DMG400011066' => 'stu', 'PGSC0003DMG400012041' => 'stu', 'PGSC0003DMG400013678' => 'stu', 'PGSC0003DMG400023477' => 'stu', 'PGSC0003DMG400025956' => 'stu', 'PGSC0003DMG401019151' => 'stu', 'Phvul.006G116400' => 'pvu', 'Phvul.007G097300' => 'pvu', 'Phvul.010G015000' => 'pvu', 'Phvul.010G083900' => 'pvu', 'Potri.001G117100' => 'ptr', 'Potri.002G147300' => 'ptr', 'Potri.003G115600' => 'ptr', 'Potri.006G087400' => 'ptr', 'Potri.010G226100' => 'ptr', 'Potri.014G069200' => 'ptr', 'Potri.014G104000' => 'ptr', 'Potri.016G100200' => 'ptr', 'Pp3c10_20450' => 'ppa', 'Pp3c1_42400' => 'ppa', 'Pp3c3_24390' => 'ppa', 'Pp3c3_2860' => 'ppa', 'PRCOL_00003193' => 'pco', 'Prupe.2G144500' => 'ppe', 'Prupe.2G195700' => 'ppe', 'Prupe.2G209800' => 'ppe', 'Prupe.5G080000' => 'ppe', 'Prupe.6G257900' => 'ppe', 'Psat3g001160' => 'psa', 'Psat6g181880' => 'psa', 'Psat7g233720' => 'psa', 'PSO063G7587' => 'pso', 'PSO339G2145' => 'pso', 'PSO339G3369' => 'pso', 'PSO478G2747' => 'pso', 'PSO513G0140' => 'pso', 'PSO782G1614' => 'pso', 'PSO782G4889' => 'pso', 'PSO782G5485' => 'pso', 'PSO801G0241' => 'pso', 'QL07p048854' => 'qlo', 'QL08p046745' => 'qlo', 'QL08p052606' => 'qlo', 'QL08p053414' => 'qlo', 'QL08p054868' => 'qlo', 'RcHm_v2.0_Chr1g0350251' => 'rch', 'RcHm_v2.0_Chr1g0360851' => 'rch', 'RcHm_v2.0_Chr1g0362791' => 'rch', 'RcHm_v2.0_Chr3g0466281' => 'rch', 'RcHm_v2.0_Chr7g0201481' => 'rch', 'Rhsim01G0148600' => 'rsi', 'Rhsim05G0194400' => 'rsi', 'Rhsim07G0000700' => 'rsi', 'Rhsim07G0000800' => 'rsi', 'Rhsim07G0027900' => 'rsi', 'Rhsim09G0149500' => 'rsi', 'RhsimUnG0186900' => 'rsi', 'Sabra01G0089900' => 'sbr', 'Sabra02G0114700' => 'sbr', 'Sabra02G0116300' => 'sbr', 'Sabra03G0080100' => 'sbr', 'Sabra08G0024300' => 'sbr', 'Sabra10G0174300' => 'sbr', 'Sabra14G0048900' => 'sbr', 'Sabra14G0076500' => 'sbr', 'SalBow5G2513' => 'sbo', 'Sc01g0002300' => 'sci', 'Sc01g0004450' => 'sci', 'Sc06g0001680' => 'sci', 'Sc23g0003580' => 'sci', 'Sed0000913' => 'sed', 'Sed0001655' => 'sed', 'Sed0007745' => 'sed', 'Sed0010951' => 'sed', 'Sed0017599' => 'sed', 'Sed0021405' => 'sed', 'Sed0022810' => 'sed', 'SEGI_07099' => 'sgi', 'SEGI_11931' => 'sgi', 'SEGI_13187' => 'sgi', 'SEGI_29958' => 'sgi', 'SEGI_36351' => 'sgi', 'SGA_v2.0_scaffold126G33770' => 'sas', 'SGA_v2.0_scaffold153G37003' => 'sas', 'SGA_v2.0_scaffold2G01359' => 'sas', 'SGA_v2.0_scaffold5G03064' => 'sas', 'SGA_v2.0_scaffold95G28903' => 'sas', 'SHI12701' => 'shi', 'SHI26410' => 'shi', 'SHI38997' => 'shi', 'SHI53759' => 'shi', 'SHI53886' => 'shi', 'SHI54714' => 'shi', 'SMO011G0041' => 'smo', 'SMO146G0251' => 'smo', 'SMO160G0004' => 'smo', 'SMO174G0057' => 'smo', 'SMO244G0089' => 'smo', 'SMO296G0011' => 'smo', 'Solyc01g091280.3' => 'sly', 'Solyc05g047610.3' => 'sly', 'Solyc05g047640.3' => 'sly', 'Solyc05g055630.3' => 'sly', 'Solyc10g018160.2' => 'sly', 'Solyc10g084820.2' => 'sly', 'Solyc10g086565.2' => 'sly', 'Sopen01g037030' => 'spe', 'Sopen05g027920' => 'spe', 'Sopen05g034070' => 'spe', 'Sopen10g007260' => 'spe', 'Sopen10g034260' => 'spe', 'Sopen10g035950' => 'spe', 'Sp3g07710' => 'spa', 'Sp4g27420' => 'spa', 'Sp5g02450' => 'spa', 'Sp6g01280' => 'spa', 'Sp6g38480' => 'spa', 'Sp7g20780' => 'spa', 'TAR374G1413' => 'tar', 'TAR623G1777' => 'tar', 'TAR629G2370' => 'tar', 'TAR633G1759' => 'tar', 'TAR636G3387' => 'tar', 'THA.LOC104802447' => 'tha', 'THA.LOC104813916' => 'tha', 'THA.LOC104816423' => 'tha', 'THA.LOC104817246' => 'tha', 'THA.LOC104825895' => 'tha', 'Thecc.01G335200' => 'tca', 'Thecc.01G377400' => 'tca', 'Thecc.03G262200' => 'tca', 'Thecc.05G036800' => 'tca', 'Thecc.10G080500' => 'tca', 'Thecc.10G080800' => 'tca', 'Thhalv10001560m.g' => 'esa', 'Thhalv10006120m.g' => 'esa', 'Thhalv10014375m.g' => 'esa', 'Thhalv10021264m.g' => 'esa', 'Thhalv10028856m.g' => 'esa', 'TPR.G1914' => 'tpr', 'TPR.G4757' => 'tpr', 'TPR.G5595' => 'tpr', 'TWI14G0952' => 'twi', 'TWI14G1307' => 'twi', 'TWI38G2143' => 'twi', 'TWI59G0826' => 'twi', 'TWI77G0527' => 'twi', 'TWI81G0150' => 'twi', 'unitig_21.g21018' => 'ugi', 'unitig_26.g9725' => 'ugi', 'unitig_744.g24653' => 'ugi', 'unitig_749.g13778' => 'ugi', 'unitig_899.g15035' => 'ugi', 'vmacro04296' => 'vma', 'vmacro04852' => 'vma', 'vmacro13404' => 'vma', 'vmacro20169' => 'vma', 'vmacro21014' => 'vma', 'VMungo0331G0237' => 'vmu', 'VMungo0331G0706' => 'vmu', 'VMungo0331G1361' => 'vmu', 'VMungo0331G1489' => 'vmu', 'VMungo0540G1037' => 'vmu', 'VMungo0720G2487' => 'vmu', 'VMungo0720G2721' => 'vmu', 'Zm00001eb086860' => 'zma', 'Zm00001eb104760' => 'zma', 'Zm00001eb148220' => 'zma', 'Zm00001eb259030' => 'zma', 'Zm00001eb289590' => 'zma', 'Zm00001eb420150' => 'zma' ) $gf_id = 'HOM05D000968' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000968' ) $data_identifier = 'HOM05D000968' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 19, 'bol' => (int) 9, 'bra' => (int) 12, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 5, 'ccan' => (int) 7, 'cde' => (int) 5, 'cfa' => (int) 8, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 4, 'dca' => (int) 5, 'din' => (int) 5, 'dzi' => (int) 12, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 25, 'fve' => (int) 5, 'gma' => (int) 9, 'ghi' => (int) 18, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 7, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 5, 'sun' => (int) 2, 'lal' => (int) 9, 'lja' => (int) 5, 'lonja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 9, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 2, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 3, 'stu' => (int) 6, 'pvu' => (int) 4, 'ptr' => (int) 8, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 3, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 1, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 5, 'sas' => (int) 5, 'shi' => (int) 6, 'smo' => (int) 6, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 3, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420150' $species_info = array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ) $local_species = 'mco' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000968', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p31690' => 'bna', 'A03p36040' => 'bna', 'A03p53730' => 'bna', 'A04p01410' => 'bna', 'A05p05420' => 'bna', 'A05p39630' => 'bna', 'A05p39640' => 'bna', 'A09p00970' => 'bna', 'A09p53060' => 'bna', 'A10p31890' => 'bna', 'Aa31LG10G15040' => 'aar', 'Aa31LG1G21090' => 'aar', 'Aa31LG1G26900' => 'aar', 'Aa31LG3G1820' => 'aar', 'Aa31LG5G1100' => 'aar', 'Aa31LG6G4740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2265' => 'aag', 'Actinidia07998' => 'ach', 'Actinidia11266' => 'ach', 'Actinidia12682' => 'ach', 'Actinidia26479' => 'ach', 'Actinidia31406' => 'ach', 'Actinidia32437' => 'ach', 'Actinidia38862' => 'ach', 'Ah.05g174230' => 'amhyb', 'Ah.05g179070' => 'amhyb', 'Ah.05g179090' => 'amhyb', 'Ah.12g059950' => 'amhyb', 'AL3G20480' => 'aly', 'AL4G44520' => 'aly', 'AL5G43110' => 'aly', 'AL6G13890' => 'aly', 'AL6G52620' => 'aly', 'AL7G30830' => 'aly', 'Aqoxy1G00899' => 'aox', 'Aqoxy5G04333' => 'aox', 'Aqoxy7G00641' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3IZ0NN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4EF6AW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W9P8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79GA3M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C43NQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFCU6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G95YVJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCHK29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LU1UG8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX91RN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGB4B1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8DA0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9H7JI' => 'arhy', 'AT3G09320' => 'ath', 'AT3G60800' => 'ath', 'AT4G00840' => 'ath', 'AT4G22750' => 'ath', 'AT5G04270' => 'ath', 'ATR0090G003' => 'atr', 'ATR0559G349' => 'atr', 'ATR0680G261' => 'atr', 'ATR0810G048' => 'atr', 'Atru.chr12.831' => 'acertr', 'Atru.chr5.303' => 'acertr', 'Atru.chr5.748' => 'acertr', 'Atru.chr8.1999' => 'acertr', 'Atru.chr9.1436' => 'acertr', 'AUR62004211' => 'cqu', 'AUR62004548' => 'cqu', 'AUR62013637' => 'cqu', 'AUR62022662' => 'cqu', 'AUR62025777' => 'cqu', 'AUR62042386' => 'cqu', 'BcaB01g02310' => 'bca', 'BcaB01g06062' => 'bca', 'BcaB02g08975' => 'bca', 'BcaB02g08980' => 'bca', 'BcaC01g04228' => 'bca', 'BcaC01g06830' => 'bca', 'BcaC02g10186' => 'bca', 'BcaC02g12214' => 'bca', 'BcaC04g24101' => 'bca', 'BcaC05g29520' => 'bca', 'BcaC05g29661' => 'bca', 'BcaC06g32130' => 'bca', 'BcaC06g32131' => 'bca', 'BcaC07g40601' => 'bca', 'BcaC07g42641' => 'bca', 'BcaNung01038' => 'bca', 'BcaNung01676' => 'bca', 'BcaNung02480' => 'bca', 'BcaNung07376' => 'bca', 'BolC3t16146H' => 'bol', 'BolC3t16637H' => 'bol', 'BolC4t22257H' => 'bol', 'BolC4t24728H' => 'bol', 'BolC5t34517H' => 'bol', 'BolC7t45703H' => 'bol', 'BolC8t51166H' => 'bol', 'BolC9t53038H' => 'bol', 'BolC9t60000H' => 'bol', 'BraA01t01345Z' => 'bra', 'BraA01t01346Z' => 'bra', 'BraA01t01348Z' => 'bra', 'BraA03t12347Z' => 'bra', 'BraA03t12775Z' => 'bra', 'BraA03t14439Z' => 'bra', 'BraA04t15860Z' => 'bra', 'BraA05t19511Z' => 'bra', 'BraA05t22746Z' => 'bra', 'BraA09t35767Z' => 'bra', 'BraA09t40732Z' => 'bra', 'BraA10t45233Z' => 'bra', 'C03p38720' => 'bna', 'C03p43680' => 'bna', 'C04p06350' => 'bna', 'C04p31800' => 'bna', 'C05p58680' => 'bna', 'C07p52110' => 'bna', 'C08p35760' => 'bna', 'C09p01050' => 'bna', 'C09p72600' => 'bna', 'CAN.G106.2' => 'can', 'CAN.G1482.1' => 'can', 'CAN.G324.12' => 'can', 'CAN.G388.20' => 'can', 'CAN.G412.7' => 'can', 'CAN.G694.32' => 'can', 'CAN.G92.12' => 'can', 'CANSAT11G2353' => 'cansat', 'CANSAT21G1398' => 'cansat', 'CANSAT56G2456' => 'cansat', 'CANSAT56G3031' => 'cansat', 'CANSAT56G4539' => 'cansat', 'CARHR083680' => 'chi', 'CARHR171190' => 'chi', 'CARHR209010' => 'chi', 'CARHR229680' => 'chi', 'CARHR249490' => 'chi', 'Carub.0003s0844' => 'cru', 'Carub.0005s2755' => 'cru', 'Carub.0006s0322' => 'cru', 'Carub.0006s3586' => 'cru', 'Carub.0007s1855' => 'cru', 'Ca_07808_v3' => 'car', 'Ca_09535_v3' => 'car', 'Ca_10548_v3' => 'car', 'Ca_19913_v3' => 'car', 'Ca_19916_v3' => 'car', 'Ca_19975_v3' => 'car', 'CBR_g22876' => 'cbr', 'CBR_g22879' => 'cbr', 'CBR_g38491' => 'cbr', 'CBR_g54185' => 'cbr', 'CBR_g54190' => 'cbr', 'Cc02_g11020' => 'ccan', 'Cc02_g23920' => 'ccan', 'Cc02_g39860' => 'ccan', 'Cc02_g39870' => 'ccan', 'Cc03_g06760' => 'ccan', 'Cc06_g02450' => 'ccan', 'Cc09_g09450' => 'ccan', 'CDE02G1959' => 'cde', 'CDE04G0600' => 'cde', 'CDE07G1996' => 'cde', 'CDE07G2078' => 'cde', 'CDE11G0611' => 'cde', 'Cfa001683' => 'cfa', 'Cfa001734' => 'cfa', 'Cfa001737' => 'cfa', 'Cfa003751' => 'cfa', 'Cfa012019' => 'cfa', 'Cfa017353' => 'cfa', 'Cfa017732' => 'cfa', 'Cfa022464' => 'cfa', 'Ciclev10012400m.g' => 'ccl', 'Ciclev10021242m.g' => 'ccl', 'Ciclev10021302m.g' => 'ccl', 'Ciclev10021463m.g' => 'ccl', 'Ciclev10032359m.g' => 'ccl', 'CiPaw.01G081000' => 'cil', 'CiPaw.01G262500' => 'cil', 'CiPaw.01G269800' => 'cil', 'CiPaw.02G168400' => 'cil', 'CiPaw.05G119500' => 'cil', 'CiPaw.11G147300' => 'cil', 'ClCG01G003630' => 'cla', 'ClCG05G000510' => 'cla', 'ClCG05G002300' => 'cla', 'ClCG08G007650' => 'cla', 'ClCG10G021250' => 'cla', 'COL.COLO4_06218' => 'col', 'COL.COLO4_12538' => 'col', 'COL.COLO4_14775' => 'col', 'COL.COLO4_23875' => 'col', 'Cpa.g.sc141.16' => 'cpa', 'Cpa.g.sc169.16' => 'cpa', 'Cpa.g.sc244.4' => 'cpa', 'Cpa.g.sc244.5' => 'cpa', 'Cpa.g.sc29.87' => 'cpa', 'Cpa.g.sc53.115' => 'cpa', 'Cre03.g207502' => 'cre', 'Cre06.g277000' => 'cre', 'Cre09.g394050' => 'cre', 'CsaV3_3G007680' => 'csa', 'CsaV3_3G009710' => 'csa', 'CsaV3_3G034790' => 'csa', 'CsaV3_5G003750' => 'csa', 'CsaV3_6G036620' => 'csa', 'CSS0002288' => 'camsi', 'CSS0011250' => 'camsi', 'CSS0021619' => 'camsi', 'CSS0046701' => 'camsi', 'DCAR_006420' => 'dca', 'DCAR_006865' => 'dca', 'DCAR_008558' => 'dca', 'DCAR_028754' => 'dca', 'DCAR_028755' => 'dca', 'Dinv31218' => 'din', 'Dinv32371' => 'din', 'Dinv34250' => 'din', 'Dinv37156' => 'din', 'Dinv43704' => 'din', 'Duzib093G1811' => 'dzi', 'Duzib106G1622' => 'dzi', 'Duzib114G0504' => 'dzi', 'Duzib128G0338' => 'dzi', 'Duzib128G1577' => 'dzi', 'Duzib133G0104' => 'dzi', 'Duzib133G1080' => 'dzi', 'Duzib138G0324' => 'dzi', 'Duzib138G0394' => 'dzi', 'Duzib205G0122' => 'dzi', 'Duzib268G1020' => 'dzi', 'Duzib268G1359' => 'dzi', 'ECA232G3929' => 'eca', 'ECA236G2210' => 'eca', 'ECA236G2287' => 'eca', 'ECA240G4568' => 'eca', 'ECA247G0894' => 'eca', 'EL10Ac1g00200' => 'bvu', 'EL10Ac1g00886' => 'bvu', 'EL10As1g23091' => 'bvu', 'EL10As1g23092' => 'bvu', 'Eucgr.A01284' => 'egr', 'Eucgr.A01285' => 'egr', 'Eucgr.D02456' => 'egr', 'Eucgr.E00018' => 'egr', 'Eucgr.E01439' => 'egr', 'Eucgr.G02859' => 'egr', 'FAN01G0168' => 'fan', 'FAN01G0453' => 'fan', 'FAN01G2761' => 'fan', 'FAN02G1239' => 'fan', 'FAN03G0645' => 'fan', 'FAN03G2707' => 'fan', 'FAN03G2978' => 'fan', 'FAN04G0227' => 'fan', 'FAN06G0091' => 'fan', 'FAN06G1418' => 'fan', 'FAN06G1512' => 'fan', 'FAN06G1986' => 'fan', 'FAN06G2905' => 'fan', 'FAN06G4325' => 'fan', 'FAN08G0033' => 'fan', 'FAN09G0642' => 'fan', 'FAN10G1763' => 'fan', 'FAN10G2026' => 'fan', 'FAN10G2513' => 'fan', 'FAN10G3402' => 'fan', 'FAN10G3564' => 'fan', 'FAN10G3987' => 'fan', 'FAN13G1490' => 'fan', 'FAN14G5857' => 'fan', 'FAN18G1188' => 'fan', 'FvH4_5g00750' => 'fve', 'FvH4_6g13410' => 'fve', 'FvH4_7g11740' => 'fve', 'FvH4_7g17410' => 'fve', 'FvH4_7g18860' => 'fve', 'Glyma.01G099100' => 'gma', 'Glyma.01G142300' => 'gma', 'Glyma.03G025500' => 'gma', 'Glyma.03G069700' => 'gma', 'Glyma.03G260000' => 'gma', 'Glyma.09G269800' => 'gma', 'Glyma.10G208700' => 'gma', 'Glyma.18G220400' => 'gma', 'Glyma.20G182000' => 'gma', 'Gohir.A01G221726' => 'ghi', 'Gohir.A07G134600' => 'ghi', 'Gohir.A07G146000' => 'ghi', 'Gohir.A08G173900' => 'ghi', 'Gohir.A09G194900' => 'ghi', 'Gohir.A10G204100' => 'ghi', 'Gohir.A11G080600' => 'ghi', 'Gohir.A11G327500' => 'ghi', 'Gohir.A12G101800' => 'ghi', 'Gohir.D01G211200' => 'ghi', 'Gohir.D07G139200' => 'ghi', 'Gohir.D07G152100' => 'ghi', 'Gohir.D08G192600' => 'ghi', 'Gohir.D09G189200' => 'ghi', 'Gohir.D10G212000' => 'ghi', 'Gohir.D11G085200' => 'ghi', 'Gohir.D11G346400' => 'ghi', 'Gohir.D12G104800' => 'ghi', 'Gorai.001G151300' => 'gra', 'Gorai.001G174100' => 'gra', 'Gorai.002G257000' => 'gra', 'Gorai.004G202600' => 'gra', 'Gorai.007G090900' => 'gra', 'Gorai.007G376700' => 'gra', 'Gorai.008G114100' => 'gra', 'Gorai.011G237900' => 'gra', 'GSVIVG01005450001' => 'vvi', 'GSVIVG01016232001' => 'vvi', 'GSVIVG01026157001' => 'vvi', 'GSVIVG01027419001' => 'vvi', 'GSVIVG01027631001' => 'vvi', 'GSVIVG01034143001' => 'vvi', 'HanXRQChr03g0093921' => 'han', 'HanXRQChr04g0120001' => 'han', 'HanXRQChr04g0122561' => 'han', 'HanXRQChr09g0246851' => 'han', 'HanXRQChr10g0293311' => 'han', 'HanXRQChr13g0425231' => 'han', 'HanXRQChr16g0532571' => 'han', 'Haze_09050' => 'cav', 'Haze_15715' => 'cav', 'Haze_15716' => 'cav', 'Haze_16803' => 'cav', 'Haze_16850' => 'cav', 'Hma1.2p1_0301F.1_g118655' => 'hma', 'Hma1.2p1_0309F.1_g120590' => 'hma', 'Hma1.2p1_0936F.1_g238900' => 'hma', 'Hma1.2p1_3552F.1_g336740' => 'hma', 'HPP92_003520' => 'vpl', 'HPP92_006628' => 'vpl', 'HPP92_006645' => 'vpl', 'HPP92_014669' => 'vpl', 'HPP92_015077' => 'vpl', 'Hund16742' => 'sun', 'Hund17022' => 'sun', 'Lalb_Chr02g0152131' => 'lal', 'Lalb_Chr05g0225371' => 'lal', 'Lalb_Chr07g0189841' => 'lal', 'Lalb_Chr07g0192961' => 'lal', 'Lalb_Chr12g0208221' => 'lal', 'Lalb_Chr13g0291211' => 'lal', 'Lalb_Chr13g0291781' => 'lal', 'Lalb_Chr18g0044651' => 'lal', 'Lalb_Chr21g0313731' => 'lal', 'Lj1g0022533' => 'lja', 'Lj2A18T50' => 'lonja', 'Lj2A92G93' => 'lonja', 'Lj3A965T73' => 'lonja', 'Lj3g0000673' => 'lja', 'Lj3g0002666' => 'lja', 'Lj4g0016985' => 'lja', 'Lj5g0003625' => 'lja', 'Lj7A529G36' => 'lonja', 'Lj9A569T49' => 'lonja', 'Lj9A604T63' => 'lonja', 'Lsat_1_v5_gn_3_132060' => 'lsa', 'Lsat_1_v5_gn_4_68941' => 'lsa', 'Lsat_1_v5_gn_5_95580' => 'lsa', 'Lsat_1_v5_gn_7_161' => 'lsa', 'Lsat_1_v5_gn_7_7041' => 'lsa', 'Lsat_1_v5_gn_9_33481' => 'lsa', 'Lsat_1_v5_gn_9_68260' => 'lsa', 'Manes.01G073100' => 'mes', 'Manes.01G266300' => 'mes', 'Manes.02G033300' => 'mes', 'Manes.05G017900' => 'mes', 'Manes.05G046100' => 'mes', 'Manes.08G080900' => 'mes', 'Manes.10G049400' => 'mes', 'Mapoly0009s0186' => 'mpo', 'Mapoly0036s0118' => 'mpo', 'Mapoly0101s0046' => 'mpo', 'MBI04_g30218_MAGBIO' => 'mbi', 'MBI04_g35564_MAGBIO' => 'mbi', 'MBI12_g34011_MAGBIO' => 'mbi', 'MBI14_g04655_MAGBIO' => 'mbi', 'MCO07G653' => 'mco', 'MCO10G173' => 'mco', 'MD01G1087100' => 'mdo', 'MD01G1104200' => 'mdo', 'MD02G1205100' => 'mdo', 'MD04G1079200' => 'mdo', 'MD04G1131400' => 'mdo', 'MD07G1121600' => 'mdo', 'MD07G1157300' => 'mdo', 'MD07G1171000' => 'mdo', 'MD12G1144500' => 'mdo', 'Medtr1g094610' => 'mtr', 'Medtr4g021795' => 'mtr', 'Medtr4g023760' => 'mtr', 'Medtr7g118050' => 'mtr', 'MELO3C005582.2' => 'cme', 'MELO3C005989.2' => 'cme', 'MELO3C006192.2' => 'cme', 'MELO3C009248.2' => 'cme', 'MELO3C019817.2' => 'cme', 'Migut.B01625' => 'egut', 'Migut.B01915' => 'egut', 'Migut.F01721' => 'egut', 'Migut.J00314' => 'egut', 'MSTRG.20742' => 'ama', 'MSTRG.8134' => 'ama', 'Nitab4.5_0000096g0010' => 'nta', 'Nitab4.5_0000202g0030' => 'nta', 'Nitab4.5_0000216g0370' => 'nta', 'Nitab4.5_0000457g0230' => 'nta', 'Nitab4.5_0001702g0170' => 'nta', 'Nitab4.5_0003607g0010' => 'nta', 'Nitab4.5_0004917g0020' => 'nta', 'Nitab4.5_0007059g0010' => 'nta', 'Nitab4.5_0007184g0010' => 'nta', 'Nitab4.5_0007346g0020' => 'nta', 'Nn1g00410' => 'nnu', 'Nn1g01252' => 'nnu', 'Nn2g11168' => 'nnu', 'Nn2g13403' => 'nnu', 'Nn2g13760' => 'nnu', 'Nn4g26380' => 'nnu', 'Oeu000806.2' => 'oeu', 'Oeu005788.1' => 'oeu', 'Oeu006900.3' => 'oeu', 'Oeu007797.1' => 'oeu', 'Oeu011932.1' => 'oeu', 'Oeu022739.1' => 'oeu', 'Oeu037918.1' => 'oeu', 'Oeu055490.2' => 'oeu', 'Os01g0844400' => 'osa', 'Os02g0819100' => 'osa', 'Os03g0804300' => 'osa', 'Os05g0458000' => 'osa', 'Os07g0467800' => 'osa', 'Os12g0602200' => 'osa', 'Peaxi162Scf00013g03444' => 'pax', 'Peaxi162Scf00094g01120' => 'pax', 'Peaxi162Scf00191g01211' => 'pax', 'Peaxi162Scf00238g01110' => 'pax', 'Peaxi162Scf00330g00719' => 'pax', 'Peaxi162Scf00627g00018' => 'pax', 'PGR031G2686' => 'pgr', 'PGR042G0809' => 'pgr', 'PGR142G0193' => 'pgr', 'PGSC0003DMG400011066' => 'stu', 'PGSC0003DMG400012041' => 'stu', 'PGSC0003DMG400013678' => 'stu', 'PGSC0003DMG400023477' => 'stu', 'PGSC0003DMG400025956' => 'stu', 'PGSC0003DMG401019151' => 'stu', 'Phvul.006G116400' => 'pvu', 'Phvul.007G097300' => 'pvu', 'Phvul.010G015000' => 'pvu', 'Phvul.010G083900' => 'pvu', 'Potri.001G117100' => 'ptr', 'Potri.002G147300' => 'ptr', 'Potri.003G115600' => 'ptr', 'Potri.006G087400' => 'ptr', 'Potri.010G226100' => 'ptr', 'Potri.014G069200' => 'ptr', 'Potri.014G104000' => 'ptr', 'Potri.016G100200' => 'ptr', 'Pp3c10_20450' => 'ppa', 'Pp3c1_42400' => 'ppa', 'Pp3c3_24390' => 'ppa', 'Pp3c3_2860' => 'ppa', 'PRCOL_00003193' => 'pco', 'Prupe.2G144500' => 'ppe', 'Prupe.2G195700' => 'ppe', 'Prupe.2G209800' => 'ppe', 'Prupe.5G080000' => 'ppe', 'Prupe.6G257900' => 'ppe', 'Psat3g001160' => 'psa', 'Psat6g181880' => 'psa', 'Psat7g233720' => 'psa', 'PSO063G7587' => 'pso', 'PSO339G2145' => 'pso', 'PSO339G3369' => 'pso', 'PSO478G2747' => 'pso', 'PSO513G0140' => 'pso', 'PSO782G1614' => 'pso', 'PSO782G4889' => 'pso', 'PSO782G5485' => 'pso', 'PSO801G0241' => 'pso', 'QL07p048854' => 'qlo', 'QL08p046745' => 'qlo', 'QL08p052606' => 'qlo', 'QL08p053414' => 'qlo', 'QL08p054868' => 'qlo', 'RcHm_v2.0_Chr1g0350251' => 'rch', 'RcHm_v2.0_Chr1g0360851' => 'rch', 'RcHm_v2.0_Chr1g0362791' => 'rch', 'RcHm_v2.0_Chr3g0466281' => 'rch', 'RcHm_v2.0_Chr7g0201481' => 'rch', 'Rhsim01G0148600' => 'rsi', 'Rhsim05G0194400' => 'rsi', 'Rhsim07G0000700' => 'rsi', 'Rhsim07G0000800' => 'rsi', 'Rhsim07G0027900' => 'rsi', 'Rhsim09G0149500' => 'rsi', 'RhsimUnG0186900' => 'rsi', 'Sabra01G0089900' => 'sbr', 'Sabra02G0114700' => 'sbr', 'Sabra02G0116300' => 'sbr', 'Sabra03G0080100' => 'sbr', 'Sabra08G0024300' => 'sbr', 'Sabra10G0174300' => 'sbr', 'Sabra14G0048900' => 'sbr', 'Sabra14G0076500' => 'sbr', 'SalBow5G2513' => 'sbo', 'Sc01g0002300' => 'sci', 'Sc01g0004450' => 'sci', 'Sc06g0001680' => 'sci', 'Sc23g0003580' => 'sci', 'Sed0000913' => 'sed', 'Sed0001655' => 'sed', 'Sed0007745' => 'sed', 'Sed0010951' => 'sed', 'Sed0017599' => 'sed', 'Sed0021405' => 'sed', 'Sed0022810' => 'sed', 'SEGI_07099' => 'sgi', 'SEGI_11931' => 'sgi', 'SEGI_13187' => 'sgi', 'SEGI_29958' => 'sgi', 'SEGI_36351' => 'sgi', 'SGA_v2.0_scaffold126G33770' => 'sas', 'SGA_v2.0_scaffold153G37003' => 'sas', 'SGA_v2.0_scaffold2G01359' => 'sas', 'SGA_v2.0_scaffold5G03064' => 'sas', 'SGA_v2.0_scaffold95G28903' => 'sas', 'SHI12701' => 'shi', 'SHI26410' => 'shi', 'SHI38997' => 'shi', 'SHI53759' => 'shi', 'SHI53886' => 'shi', 'SHI54714' => 'shi', 'SMO011G0041' => 'smo', 'SMO146G0251' => 'smo', 'SMO160G0004' => 'smo', 'SMO174G0057' => 'smo', 'SMO244G0089' => 'smo', 'SMO296G0011' => 'smo', 'Solyc01g091280.3' => 'sly', 'Solyc05g047610.3' => 'sly', 'Solyc05g047640.3' => 'sly', 'Solyc05g055630.3' => 'sly', 'Solyc10g018160.2' => 'sly', 'Solyc10g084820.2' => 'sly', 'Solyc10g086565.2' => 'sly', 'Sopen01g037030' => 'spe', 'Sopen05g027920' => 'spe', 'Sopen05g034070' => 'spe', 'Sopen10g007260' => 'spe', 'Sopen10g034260' => 'spe', 'Sopen10g035950' => 'spe', 'Sp3g07710' => 'spa', 'Sp4g27420' => 'spa', 'Sp5g02450' => 'spa', 'Sp6g01280' => 'spa', 'Sp6g38480' => 'spa', 'Sp7g20780' => 'spa', 'TAR374G1413' => 'tar', 'TAR623G1777' => 'tar', 'TAR629G2370' => 'tar', 'TAR633G1759' => 'tar', 'TAR636G3387' => 'tar', 'THA.LOC104802447' => 'tha', 'THA.LOC104813916' => 'tha', 'THA.LOC104816423' => 'tha', 'THA.LOC104817246' => 'tha', 'THA.LOC104825895' => 'tha', 'Thecc.01G335200' => 'tca', 'Thecc.01G377400' => 'tca', 'Thecc.03G262200' => 'tca', 'Thecc.05G036800' => 'tca', 'Thecc.10G080500' => 'tca', 'Thecc.10G080800' => 'tca', 'Thhalv10001560m.g' => 'esa', 'Thhalv10006120m.g' => 'esa', 'Thhalv10014375m.g' => 'esa', 'Thhalv10021264m.g' => 'esa', 'Thhalv10028856m.g' => 'esa', 'TPR.G1914' => 'tpr', 'TPR.G4757' => 'tpr', 'TPR.G5595' => 'tpr', 'TWI14G0952' => 'twi', 'TWI14G1307' => 'twi', 'TWI38G2143' => 'twi', 'TWI59G0826' => 'twi', 'TWI77G0527' => 'twi', 'TWI81G0150' => 'twi', 'unitig_21.g21018' => 'ugi', 'unitig_26.g9725' => 'ugi', 'unitig_744.g24653' => 'ugi', 'unitig_749.g13778' => 'ugi', 'unitig_899.g15035' => 'ugi', 'vmacro04296' => 'vma', 'vmacro04852' => 'vma', 'vmacro13404' => 'vma', 'vmacro20169' => 'vma', 'vmacro21014' => 'vma', 'VMungo0331G0237' => 'vmu', 'VMungo0331G0706' => 'vmu', 'VMungo0331G1361' => 'vmu', 'VMungo0331G1489' => 'vmu', 'VMungo0540G1037' => 'vmu', 'VMungo0720G2487' => 'vmu', 'VMungo0720G2721' => 'vmu', 'Zm00001eb086860' => 'zma', 'Zm00001eb104760' => 'zma', 'Zm00001eb148220' => 'zma', 'Zm00001eb259030' => 'zma', 'Zm00001eb289590' => 'zma', 'Zm00001eb420150' => 'zma' ), 'gf_id' => 'HOM05D000968', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000968' ), 'data_identifier' => 'HOM05D000968', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000968', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p31690' => 'bna', 'A03p36040' => 'bna', 'A03p53730' => 'bna', 'A04p01410' => 'bna', 'A05p05420' => 'bna', 'A05p39630' => 'bna', 'A05p39640' => 'bna', 'A09p00970' => 'bna', 'A09p53060' => 'bna', 'A10p31890' => 'bna', 'Aa31LG10G15040' => 'aar', 'Aa31LG1G21090' => 'aar', 'Aa31LG1G26900' => 'aar', 'Aa31LG3G1820' => 'aar', 'Aa31LG5G1100' => 'aar', 'Aa31LG6G4740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2265' => 'aag', 'Actinidia07998' => 'ach', 'Actinidia11266' => 'ach', 'Actinidia12682' => 'ach', 'Actinidia26479' => 'ach', 'Actinidia31406' => 'ach', 'Actinidia32437' => 'ach', 'Actinidia38862' => 'ach', 'Ah.05g174230' => 'amhyb', 'Ah.05g179070' => 'amhyb', 'Ah.05g179090' => 'amhyb', 'Ah.12g059950' => 'amhyb', 'AL3G20480' => 'aly', 'AL4G44520' => 'aly', 'AL5G43110' => 'aly', 'AL6G13890' => 'aly', 'AL6G52620' => 'aly', 'AL7G30830' => 'aly', 'Aqoxy1G00899' => 'aox', 'Aqoxy5G04333' => 'aox', 'Aqoxy7G00641' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3IZ0NN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4EF6AW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W9P8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79GA3M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C43NQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFCU6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G95YVJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCHK29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LU1UG8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX91RN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGB4B1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8DA0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9H7JI' => 'arhy', 'AT3G09320' => 'ath', 'AT3G60800' => 'ath', 'AT4G00840' => 'ath', 'AT4G22750' => 'ath', 'AT5G04270' => 'ath', 'ATR0090G003' => 'atr', 'ATR0559G349' => 'atr', 'ATR0680G261' => 'atr', 'ATR0810G048' => 'atr', 'Atru.chr12.831' => 'acertr', 'Atru.chr5.303' => 'acertr', 'Atru.chr5.748' => 'acertr', 'Atru.chr8.1999' => 'acertr', 'Atru.chr9.1436' => 'acertr', 'AUR62004211' => 'cqu', 'AUR62004548' => 'cqu', 'AUR62013637' => 'cqu', 'AUR62022662' => 'cqu', 'AUR62025777' => 'cqu', 'AUR62042386' => 'cqu', 'BcaB01g02310' => 'bca', 'BcaB01g06062' => 'bca', 'BcaB02g08975' => 'bca', 'BcaB02g08980' => 'bca', 'BcaC01g04228' => 'bca', 'BcaC01g06830' => 'bca', 'BcaC02g10186' => 'bca', 'BcaC02g12214' => 'bca', 'BcaC04g24101' => 'bca', 'BcaC05g29520' => 'bca', 'BcaC05g29661' => 'bca', 'BcaC06g32130' => 'bca', 'BcaC06g32131' => 'bca', 'BcaC07g40601' => 'bca', 'BcaC07g42641' => 'bca', 'BcaNung01038' => 'bca', 'BcaNung01676' => 'bca', 'BcaNung02480' => 'bca', 'BcaNung07376' => 'bca', 'BolC3t16146H' => 'bol', 'BolC3t16637H' => 'bol', 'BolC4t22257H' => 'bol', 'BolC4t24728H' => 'bol', 'BolC5t34517H' => 'bol', 'BolC7t45703H' => 'bol', 'BolC8t51166H' => 'bol', 'BolC9t53038H' => 'bol', 'BolC9t60000H' => 'bol', 'BraA01t01345Z' => 'bra', 'BraA01t01346Z' => 'bra', 'BraA01t01348Z' => 'bra', 'BraA03t12347Z' => 'bra', 'BraA03t12775Z' => 'bra', 'BraA03t14439Z' => 'bra', 'BraA04t15860Z' => 'bra', 'BraA05t19511Z' => 'bra', 'BraA05t22746Z' => 'bra', 'BraA09t35767Z' => 'bra', 'BraA09t40732Z' => 'bra', 'BraA10t45233Z' => 'bra', 'C03p38720' => 'bna', 'C03p43680' => 'bna', 'C04p06350' => 'bna', 'C04p31800' => 'bna', 'C05p58680' => 'bna', 'C07p52110' => 'bna', 'C08p35760' => 'bna', 'C09p01050' => 'bna', 'C09p72600' => 'bna', 'CAN.G106.2' => 'can', 'CAN.G1482.1' => 'can', 'CAN.G324.12' => 'can', 'CAN.G388.20' => 'can', 'CAN.G412.7' => 'can', 'CAN.G694.32' => 'can', 'CAN.G92.12' => 'can', 'CANSAT11G2353' => 'cansat', 'CANSAT21G1398' => 'cansat', 'CANSAT56G2456' => 'cansat', 'CANSAT56G3031' => 'cansat', 'CANSAT56G4539' => 'cansat', 'CARHR083680' => 'chi', 'CARHR171190' => 'chi', 'CARHR209010' => 'chi', 'CARHR229680' => 'chi', 'CARHR249490' => 'chi', 'Carub.0003s0844' => 'cru', 'Carub.0005s2755' => 'cru', 'Carub.0006s0322' => 'cru', 'Carub.0006s3586' => 'cru', 'Carub.0007s1855' => 'cru', 'Ca_07808_v3' => 'car', 'Ca_09535_v3' => 'car', 'Ca_10548_v3' => 'car', 'Ca_19913_v3' => 'car', 'Ca_19916_v3' => 'car', 'Ca_19975_v3' => 'car', 'CBR_g22876' => 'cbr', 'CBR_g22879' => 'cbr', 'CBR_g38491' => 'cbr', 'CBR_g54185' => 'cbr', 'CBR_g54190' => 'cbr', 'Cc02_g11020' => 'ccan', 'Cc02_g23920' => 'ccan', 'Cc02_g39860' => 'ccan', 'Cc02_g39870' => 'ccan', 'Cc03_g06760' => 'ccan', 'Cc06_g02450' => 'ccan', 'Cc09_g09450' => 'ccan', 'CDE02G1959' => 'cde', 'CDE04G0600' => 'cde', 'CDE07G1996' => 'cde', 'CDE07G2078' => 'cde', 'CDE11G0611' => 'cde', 'Cfa001683' => 'cfa', 'Cfa001734' => 'cfa', 'Cfa001737' => 'cfa', 'Cfa003751' => 'cfa', 'Cfa012019' => 'cfa', 'Cfa017353' => 'cfa', 'Cfa017732' => 'cfa', 'Cfa022464' => 'cfa', 'Ciclev10012400m.g' => 'ccl', 'Ciclev10021242m.g' => 'ccl', 'Ciclev10021302m.g' => 'ccl', 'Ciclev10021463m.g' => 'ccl', 'Ciclev10032359m.g' => 'ccl', 'CiPaw.01G081000' => 'cil', 'CiPaw.01G262500' => 'cil', 'CiPaw.01G269800' => 'cil', 'CiPaw.02G168400' => 'cil', 'CiPaw.05G119500' => 'cil', 'CiPaw.11G147300' => 'cil', 'ClCG01G003630' => 'cla', 'ClCG05G000510' => 'cla', 'ClCG05G002300' => 'cla', 'ClCG08G007650' => 'cla', 'ClCG10G021250' => 'cla', 'COL.COLO4_06218' => 'col', 'COL.COLO4_12538' => 'col', 'COL.COLO4_14775' => 'col', 'COL.COLO4_23875' => 'col', 'Cpa.g.sc141.16' => 'cpa', 'Cpa.g.sc169.16' => 'cpa', 'Cpa.g.sc244.4' => 'cpa', 'Cpa.g.sc244.5' => 'cpa', 'Cpa.g.sc29.87' => 'cpa', 'Cpa.g.sc53.115' => 'cpa', 'Cre03.g207502' => 'cre', 'Cre06.g277000' => 'cre', 'Cre09.g394050' => 'cre', 'CsaV3_3G007680' => 'csa', 'CsaV3_3G009710' => 'csa', 'CsaV3_3G034790' => 'csa', 'CsaV3_5G003750' => 'csa', 'CsaV3_6G036620' => 'csa', 'CSS0002288' => 'camsi', 'CSS0011250' => 'camsi', 'CSS0021619' => 'camsi', 'CSS0046701' => 'camsi', 'DCAR_006420' => 'dca', 'DCAR_006865' => 'dca', 'DCAR_008558' => 'dca', 'DCAR_028754' => 'dca', 'DCAR_028755' => 'dca', 'Dinv31218' => 'din', 'Dinv32371' => 'din', 'Dinv34250' => 'din', 'Dinv37156' => 'din', 'Dinv43704' => 'din', 'Duzib093G1811' => 'dzi', 'Duzib106G1622' => 'dzi', 'Duzib114G0504' => 'dzi', 'Duzib128G0338' => 'dzi', 'Duzib128G1577' => 'dzi', 'Duzib133G0104' => 'dzi', 'Duzib133G1080' => 'dzi', 'Duzib138G0324' => 'dzi', 'Duzib138G0394' => 'dzi', 'Duzib205G0122' => 'dzi', 'Duzib268G1020' => 'dzi', 'Duzib268G1359' => 'dzi', 'ECA232G3929' => 'eca', 'ECA236G2210' => 'eca', 'ECA236G2287' => 'eca', 'ECA240G4568' => 'eca', 'ECA247G0894' => 'eca', 'EL10Ac1g00200' => 'bvu', 'EL10Ac1g00886' => 'bvu', 'EL10As1g23091' => 'bvu', 'EL10As1g23092' => 'bvu', 'Eucgr.A01284' => 'egr', 'Eucgr.A01285' => 'egr', 'Eucgr.D02456' => 'egr', 'Eucgr.E00018' => 'egr', 'Eucgr.E01439' => 'egr', 'Eucgr.G02859' => 'egr', 'FAN01G0168' => 'fan', 'FAN01G0453' => 'fan', 'FAN01G2761' => 'fan', 'FAN02G1239' => 'fan', 'FAN03G0645' => 'fan', 'FAN03G2707' => 'fan', 'FAN03G2978' => 'fan', 'FAN04G0227' => 'fan', 'FAN06G0091' => 'fan', 'FAN06G1418' => 'fan', 'FAN06G1512' => 'fan', 'FAN06G1986' => 'fan', 'FAN06G2905' => 'fan', 'FAN06G4325' => 'fan', 'FAN08G0033' => 'fan', 'FAN09G0642' => 'fan', 'FAN10G1763' => 'fan', 'FAN10G2026' => 'fan', 'FAN10G2513' => 'fan', 'FAN10G3402' => 'fan', 'FAN10G3564' => 'fan', 'FAN10G3987' => 'fan', 'FAN13G1490' => 'fan', 'FAN14G5857' => 'fan', 'FAN18G1188' => 'fan', 'FvH4_5g00750' => 'fve', 'FvH4_6g13410' => 'fve', 'FvH4_7g11740' => 'fve', 'FvH4_7g17410' => 'fve', 'FvH4_7g18860' => 'fve', 'Glyma.01G099100' => 'gma', 'Glyma.01G142300' => 'gma', 'Glyma.03G025500' => 'gma', 'Glyma.03G069700' => 'gma', 'Glyma.03G260000' => 'gma', 'Glyma.09G269800' => 'gma', 'Glyma.10G208700' => 'gma', 'Glyma.18G220400' => 'gma', 'Glyma.20G182000' => 'gma', 'Gohir.A01G221726' => 'ghi', 'Gohir.A07G134600' => 'ghi', 'Gohir.A07G146000' => 'ghi', 'Gohir.A08G173900' => 'ghi', 'Gohir.A09G194900' => 'ghi', 'Gohir.A10G204100' => 'ghi', 'Gohir.A11G080600' => 'ghi', 'Gohir.A11G327500' => 'ghi', 'Gohir.A12G101800' => 'ghi', 'Gohir.D01G211200' => 'ghi', 'Gohir.D07G139200' => 'ghi', 'Gohir.D07G152100' => 'ghi', 'Gohir.D08G192600' => 'ghi', 'Gohir.D09G189200' => 'ghi', 'Gohir.D10G212000' => 'ghi', 'Gohir.D11G085200' => 'ghi', 'Gohir.D11G346400' => 'ghi', 'Gohir.D12G104800' => 'ghi', 'Gorai.001G151300' => 'gra', 'Gorai.001G174100' => 'gra', 'Gorai.002G257000' => 'gra', 'Gorai.004G202600' => 'gra', 'Gorai.007G090900' => 'gra', 'Gorai.007G376700' => 'gra', 'Gorai.008G114100' => 'gra', 'Gorai.011G237900' => 'gra', 'GSVIVG01005450001' => 'vvi', 'GSVIVG01016232001' => 'vvi', 'GSVIVG01026157001' => 'vvi', 'GSVIVG01027419001' => 'vvi', 'GSVIVG01027631001' => 'vvi', 'GSVIVG01034143001' => 'vvi', 'HanXRQChr03g0093921' => 'han', 'HanXRQChr04g0120001' => 'han', 'HanXRQChr04g0122561' => 'han', 'HanXRQChr09g0246851' => 'han', 'HanXRQChr10g0293311' => 'han', 'HanXRQChr13g0425231' => 'han', 'HanXRQChr16g0532571' => 'han', 'Haze_09050' => 'cav', 'Haze_15715' => 'cav', 'Haze_15716' => 'cav', 'Haze_16803' => 'cav', 'Haze_16850' => 'cav', 'Hma1.2p1_0301F.1_g118655' => 'hma', 'Hma1.2p1_0309F.1_g120590' => 'hma', 'Hma1.2p1_0936F.1_g238900' => 'hma', 'Hma1.2p1_3552F.1_g336740' => 'hma', 'HPP92_003520' => 'vpl', 'HPP92_006628' => 'vpl', 'HPP92_006645' => 'vpl', 'HPP92_014669' => 'vpl', 'HPP92_015077' => 'vpl', 'Hund16742' => 'sun', 'Hund17022' => 'sun', 'Lalb_Chr02g0152131' => 'lal', 'Lalb_Chr05g0225371' => 'lal', 'Lalb_Chr07g0189841' => 'lal', 'Lalb_Chr07g0192961' => 'lal', 'Lalb_Chr12g0208221' => 'lal', 'Lalb_Chr13g0291211' => 'lal', 'Lalb_Chr13g0291781' => 'lal', 'Lalb_Chr18g0044651' => 'lal', 'Lalb_Chr21g0313731' => 'lal', 'Lj1g0022533' => 'lja', 'Lj2A18T50' => 'lonja', 'Lj2A92G93' => 'lonja', 'Lj3A965T73' => 'lonja', 'Lj3g0000673' => 'lja', 'Lj3g0002666' => 'lja', 'Lj4g0016985' => 'lja', 'Lj5g0003625' => 'lja', 'Lj7A529G36' => 'lonja', 'Lj9A569T49' => 'lonja', 'Lj9A604T63' => 'lonja', 'Lsat_1_v5_gn_3_132060' => 'lsa', 'Lsat_1_v5_gn_4_68941' => 'lsa', 'Lsat_1_v5_gn_5_95580' => 'lsa', 'Lsat_1_v5_gn_7_161' => 'lsa', 'Lsat_1_v5_gn_7_7041' => 'lsa', 'Lsat_1_v5_gn_9_33481' => 'lsa', 'Lsat_1_v5_gn_9_68260' => 'lsa', 'Manes.01G073100' => 'mes', 'Manes.01G266300' => 'mes', 'Manes.02G033300' => 'mes', 'Manes.05G017900' => 'mes', 'Manes.05G046100' => 'mes', 'Manes.08G080900' => 'mes', 'Manes.10G049400' => 'mes', 'Mapoly0009s0186' => 'mpo', 'Mapoly0036s0118' => 'mpo', 'Mapoly0101s0046' => 'mpo', 'MBI04_g30218_MAGBIO' => 'mbi', 'MBI04_g35564_MAGBIO' => 'mbi', 'MBI12_g34011_MAGBIO' => 'mbi', 'MBI14_g04655_MAGBIO' => 'mbi', 'MCO07G653' => 'mco', 'MCO10G173' => 'mco', 'MD01G1087100' => 'mdo', 'MD01G1104200' => 'mdo', 'MD02G1205100' => 'mdo', 'MD04G1079200' => 'mdo', 'MD04G1131400' => 'mdo', 'MD07G1121600' => 'mdo', 'MD07G1157300' => 'mdo', 'MD07G1171000' => 'mdo', 'MD12G1144500' => 'mdo', 'Medtr1g094610' => 'mtr', 'Medtr4g021795' => 'mtr', 'Medtr4g023760' => 'mtr', 'Medtr7g118050' => 'mtr', 'MELO3C005582.2' => 'cme', 'MELO3C005989.2' => 'cme', 'MELO3C006192.2' => 'cme', 'MELO3C009248.2' => 'cme', 'MELO3C019817.2' => 'cme', 'Migut.B01625' => 'egut', 'Migut.B01915' => 'egut', 'Migut.F01721' => 'egut', 'Migut.J00314' => 'egut', 'MSTRG.20742' => 'ama', 'MSTRG.8134' => 'ama', 'Nitab4.5_0000096g0010' => 'nta', 'Nitab4.5_0000202g0030' => 'nta', 'Nitab4.5_0000216g0370' => 'nta', 'Nitab4.5_0000457g0230' => 'nta', 'Nitab4.5_0001702g0170' => 'nta', 'Nitab4.5_0003607g0010' => 'nta', 'Nitab4.5_0004917g0020' => 'nta', 'Nitab4.5_0007059g0010' => 'nta', 'Nitab4.5_0007184g0010' => 'nta', 'Nitab4.5_0007346g0020' => 'nta', 'Nn1g00410' => 'nnu', 'Nn1g01252' => 'nnu', 'Nn2g11168' => 'nnu', 'Nn2g13403' => 'nnu', 'Nn2g13760' => 'nnu', 'Nn4g26380' => 'nnu', 'Oeu000806.2' => 'oeu', 'Oeu005788.1' => 'oeu', 'Oeu006900.3' => 'oeu', 'Oeu007797.1' => 'oeu', 'Oeu011932.1' => 'oeu', 'Oeu022739.1' => 'oeu', 'Oeu037918.1' => 'oeu', 'Oeu055490.2' => 'oeu', 'Os01g0844400' => 'osa', 'Os02g0819100' => 'osa', 'Os03g0804300' => 'osa', 'Os05g0458000' => 'osa', 'Os07g0467800' => 'osa', 'Os12g0602200' => 'osa', 'Peaxi162Scf00013g03444' => 'pax', 'Peaxi162Scf00094g01120' => 'pax', 'Peaxi162Scf00191g01211' => 'pax', 'Peaxi162Scf00238g01110' => 'pax', 'Peaxi162Scf00330g00719' => 'pax', 'Peaxi162Scf00627g00018' => 'pax', 'PGR031G2686' => 'pgr', 'PGR042G0809' => 'pgr', 'PGR142G0193' => 'pgr', 'PGSC0003DMG400011066' => 'stu', 'PGSC0003DMG400012041' => 'stu', 'PGSC0003DMG400013678' => 'stu', 'PGSC0003DMG400023477' => 'stu', 'PGSC0003DMG400025956' => 'stu', 'PGSC0003DMG401019151' => 'stu', 'Phvul.006G116400' => 'pvu', 'Phvul.007G097300' => 'pvu', 'Phvul.010G015000' => 'pvu', 'Phvul.010G083900' => 'pvu', 'Potri.001G117100' => 'ptr', 'Potri.002G147300' => 'ptr', 'Potri.003G115600' => 'ptr', 'Potri.006G087400' => 'ptr', 'Potri.010G226100' => 'ptr', 'Potri.014G069200' => 'ptr', 'Potri.014G104000' => 'ptr', 'Potri.016G100200' => 'ptr', 'Pp3c10_20450' => 'ppa', 'Pp3c1_42400' => 'ppa', 'Pp3c3_24390' => 'ppa', 'Pp3c3_2860' => 'ppa', 'PRCOL_00003193' => 'pco', 'Prupe.2G144500' => 'ppe', 'Prupe.2G195700' => 'ppe', 'Prupe.2G209800' => 'ppe', 'Prupe.5G080000' => 'ppe', 'Prupe.6G257900' => 'ppe', 'Psat3g001160' => 'psa', 'Psat6g181880' => 'psa', 'Psat7g233720' => 'psa', 'PSO063G7587' => 'pso', 'PSO339G2145' => 'pso', 'PSO339G3369' => 'pso', 'PSO478G2747' => 'pso', 'PSO513G0140' => 'pso', 'PSO782G1614' => 'pso', 'PSO782G4889' => 'pso', 'PSO782G5485' => 'pso', 'PSO801G0241' => 'pso', 'QL07p048854' => 'qlo', 'QL08p046745' => 'qlo', 'QL08p052606' => 'qlo', 'QL08p053414' => 'qlo', 'QL08p054868' => 'qlo', 'RcHm_v2.0_Chr1g0350251' => 'rch', 'RcHm_v2.0_Chr1g0360851' => 'rch', 'RcHm_v2.0_Chr1g0362791' => 'rch', 'RcHm_v2.0_Chr3g0466281' => 'rch', 'RcHm_v2.0_Chr7g0201481' => 'rch', 'Rhsim01G0148600' => 'rsi', 'Rhsim05G0194400' => 'rsi', 'Rhsim07G0000700' => 'rsi', 'Rhsim07G0000800' => 'rsi', 'Rhsim07G0027900' => 'rsi', 'Rhsim09G0149500' => 'rsi', 'RhsimUnG0186900' => 'rsi', 'Sabra01G0089900' => 'sbr', 'Sabra02G0114700' => 'sbr', 'Sabra02G0116300' => 'sbr', 'Sabra03G0080100' => 'sbr', 'Sabra08G0024300' => 'sbr', 'Sabra10G0174300' => 'sbr', 'Sabra14G0048900' => 'sbr', 'Sabra14G0076500' => 'sbr', 'SalBow5G2513' => 'sbo', 'Sc01g0002300' => 'sci', 'Sc01g0004450' => 'sci', 'Sc06g0001680' => 'sci', 'Sc23g0003580' => 'sci', 'Sed0000913' => 'sed', 'Sed0001655' => 'sed', 'Sed0007745' => 'sed', 'Sed0010951' => 'sed', 'Sed0017599' => 'sed', 'Sed0021405' => 'sed', 'Sed0022810' => 'sed', 'SEGI_07099' => 'sgi', 'SEGI_11931' => 'sgi', 'SEGI_13187' => 'sgi', 'SEGI_29958' => 'sgi', 'SEGI_36351' => 'sgi', 'SGA_v2.0_scaffold126G33770' => 'sas', 'SGA_v2.0_scaffold153G37003' => 'sas', 'SGA_v2.0_scaffold2G01359' => 'sas', 'SGA_v2.0_scaffold5G03064' => 'sas', 'SGA_v2.0_scaffold95G28903' => 'sas', 'SHI12701' => 'shi', 'SHI26410' => 'shi', 'SHI38997' => 'shi', 'SHI53759' => 'shi', 'SHI53886' => 'shi', 'SHI54714' => 'shi', 'SMO011G0041' => 'smo', 'SMO146G0251' => 'smo', 'SMO160G0004' => 'smo', 'SMO174G0057' => 'smo', 'SMO244G0089' => 'smo', 'SMO296G0011' => 'smo', 'Solyc01g091280.3' => 'sly', 'Solyc05g047610.3' => 'sly', 'Solyc05g047640.3' => 'sly', 'Solyc05g055630.3' => 'sly', 'Solyc10g018160.2' => 'sly', 'Solyc10g084820.2' => 'sly', 'Solyc10g086565.2' => 'sly', 'Sopen01g037030' => 'spe', 'Sopen05g027920' => 'spe', 'Sopen05g034070' => 'spe', 'Sopen10g007260' => 'spe', 'Sopen10g034260' => 'spe', 'Sopen10g035950' => 'spe', 'Sp3g07710' => 'spa', 'Sp4g27420' => 'spa', 'Sp5g02450' => 'spa', 'Sp6g01280' => 'spa', 'Sp6g38480' => 'spa', 'Sp7g20780' => 'spa', 'TAR374G1413' => 'tar', 'TAR623G1777' => 'tar', 'TAR629G2370' => 'tar', 'TAR633G1759' => 'tar', 'TAR636G3387' => 'tar', 'THA.LOC104802447' => 'tha', 'THA.LOC104813916' => 'tha', 'THA.LOC104816423' => 'tha', 'THA.LOC104817246' => 'tha', 'THA.LOC104825895' => 'tha', 'Thecc.01G335200' => 'tca', 'Thecc.01G377400' => 'tca', 'Thecc.03G262200' => 'tca', 'Thecc.05G036800' => 'tca', 'Thecc.10G080500' => 'tca', 'Thecc.10G080800' => 'tca', 'Thhalv10001560m.g' => 'esa', 'Thhalv10006120m.g' => 'esa', 'Thhalv10014375m.g' => 'esa', 'Thhalv10021264m.g' => 'esa', 'Thhalv10028856m.g' => 'esa', 'TPR.G1914' => 'tpr', 'TPR.G4757' => 'tpr', 'TPR.G5595' => 'tpr', 'TWI14G0952' => 'twi', 'TWI14G1307' => 'twi', 'TWI38G2143' => 'twi', 'TWI59G0826' => 'twi', 'TWI77G0527' => 'twi', 'TWI81G0150' => 'twi', 'unitig_21.g21018' => 'ugi', 'unitig_26.g9725' => 'ugi', 'unitig_744.g24653' => 'ugi', 'unitig_749.g13778' => 'ugi', 'unitig_899.g15035' => 'ugi', 'vmacro04296' => 'vma', 'vmacro04852' => 'vma', 'vmacro13404' => 'vma', 'vmacro20169' => 'vma', 'vmacro21014' => 'vma', 'VMungo0331G0237' => 'vmu', 'VMungo0331G0706' => 'vmu', 'VMungo0331G1361' => 'vmu', 'VMungo0331G1489' => 'vmu', 'VMungo0540G1037' => 'vmu', 'VMungo0720G2487' => 'vmu', 'VMungo0720G2721' => 'vmu', 'Zm00001eb086860' => 'zma', 'Zm00001eb104760' => 'zma', 'Zm00001eb148220' => 'zma', 'Zm00001eb259030' => 'zma', 'Zm00001eb289590' => 'zma', 'Zm00001eb420150' => 'zma' ) $gf_id = 'HOM05D000968' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000968' ) $data_identifier = 'HOM05D000968' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 19, 'bol' => (int) 9, 'bra' => (int) 12, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 5, 'ccan' => (int) 7, 'cde' => (int) 5, 'cfa' => (int) 8, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 4, 'dca' => (int) 5, 'din' => (int) 5, 'dzi' => (int) 12, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 25, 'fve' => (int) 5, 'gma' => (int) 9, 'ghi' => (int) 18, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 7, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 5, 'sun' => (int) 2, 'lal' => (int) 9, 'lja' => (int) 5, 'lonja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 9, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 2, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 3, 'stu' => (int) 6, 'pvu' => (int) 4, 'ptr' => (int) 8, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 3, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 1, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 5, 'sas' => (int) 5, 'shi' => (int) 6, 'smo' => (int) 6, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 3, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420150' $species_info = array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ) $local_species = 'mco' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000968', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p31690' => 'bna', 'A03p36040' => 'bna', 'A03p53730' => 'bna', 'A04p01410' => 'bna', 'A05p05420' => 'bna', 'A05p39630' => 'bna', 'A05p39640' => 'bna', 'A09p00970' => 'bna', 'A09p53060' => 'bna', 'A10p31890' => 'bna', 'Aa31LG10G15040' => 'aar', 'Aa31LG1G21090' => 'aar', 'Aa31LG1G26900' => 'aar', 'Aa31LG3G1820' => 'aar', 'Aa31LG5G1100' => 'aar', 'Aa31LG6G4740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2265' => 'aag', 'Actinidia07998' => 'ach', 'Actinidia11266' => 'ach', 'Actinidia12682' => 'ach', 'Actinidia26479' => 'ach', 'Actinidia31406' => 'ach', 'Actinidia32437' => 'ach', 'Actinidia38862' => 'ach', 'Ah.05g174230' => 'amhyb', 'Ah.05g179070' => 'amhyb', 'Ah.05g179090' => 'amhyb', 'Ah.12g059950' => 'amhyb', 'AL3G20480' => 'aly', 'AL4G44520' => 'aly', 'AL5G43110' => 'aly', 'AL6G13890' => 'aly', 'AL6G52620' => 'aly', 'AL7G30830' => 'aly', 'Aqoxy1G00899' => 'aox', 'Aqoxy5G04333' => 'aox', 'Aqoxy7G00641' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3IZ0NN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4EF6AW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W9P8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79GA3M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C43NQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFCU6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G95YVJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCHK29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LU1UG8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX91RN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGB4B1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8DA0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9H7JI' => 'arhy', 'AT3G09320' => 'ath', 'AT3G60800' => 'ath', 'AT4G00840' => 'ath', 'AT4G22750' => 'ath', 'AT5G04270' => 'ath', 'ATR0090G003' => 'atr', 'ATR0559G349' => 'atr', 'ATR0680G261' => 'atr', 'ATR0810G048' => 'atr', 'Atru.chr12.831' => 'acertr', 'Atru.chr5.303' => 'acertr', 'Atru.chr5.748' => 'acertr', 'Atru.chr8.1999' => 'acertr', 'Atru.chr9.1436' => 'acertr', 'AUR62004211' => 'cqu', 'AUR62004548' => 'cqu', 'AUR62013637' => 'cqu', 'AUR62022662' => 'cqu', 'AUR62025777' => 'cqu', 'AUR62042386' => 'cqu', 'BcaB01g02310' => 'bca', 'BcaB01g06062' => 'bca', 'BcaB02g08975' => 'bca', 'BcaB02g08980' => 'bca', 'BcaC01g04228' => 'bca', 'BcaC01g06830' => 'bca', 'BcaC02g10186' => 'bca', 'BcaC02g12214' => 'bca', 'BcaC04g24101' => 'bca', 'BcaC05g29520' => 'bca', 'BcaC05g29661' => 'bca', 'BcaC06g32130' => 'bca', 'BcaC06g32131' => 'bca', 'BcaC07g40601' => 'bca', 'BcaC07g42641' => 'bca', 'BcaNung01038' => 'bca', 'BcaNung01676' => 'bca', 'BcaNung02480' => 'bca', 'BcaNung07376' => 'bca', 'BolC3t16146H' => 'bol', 'BolC3t16637H' => 'bol', 'BolC4t22257H' => 'bol', 'BolC4t24728H' => 'bol', 'BolC5t34517H' => 'bol', 'BolC7t45703H' => 'bol', 'BolC8t51166H' => 'bol', 'BolC9t53038H' => 'bol', 'BolC9t60000H' => 'bol', 'BraA01t01345Z' => 'bra', 'BraA01t01346Z' => 'bra', 'BraA01t01348Z' => 'bra', 'BraA03t12347Z' => 'bra', 'BraA03t12775Z' => 'bra', 'BraA03t14439Z' => 'bra', 'BraA04t15860Z' => 'bra', 'BraA05t19511Z' => 'bra', 'BraA05t22746Z' => 'bra', 'BraA09t35767Z' => 'bra', 'BraA09t40732Z' => 'bra', 'BraA10t45233Z' => 'bra', 'C03p38720' => 'bna', 'C03p43680' => 'bna', 'C04p06350' => 'bna', 'C04p31800' => 'bna', 'C05p58680' => 'bna', 'C07p52110' => 'bna', 'C08p35760' => 'bna', 'C09p01050' => 'bna', 'C09p72600' => 'bna', 'CAN.G106.2' => 'can', 'CAN.G1482.1' => 'can', 'CAN.G324.12' => 'can', 'CAN.G388.20' => 'can', 'CAN.G412.7' => 'can', 'CAN.G694.32' => 'can', 'CAN.G92.12' => 'can', 'CANSAT11G2353' => 'cansat', 'CANSAT21G1398' => 'cansat', 'CANSAT56G2456' => 'cansat', 'CANSAT56G3031' => 'cansat', 'CANSAT56G4539' => 'cansat', 'CARHR083680' => 'chi', 'CARHR171190' => 'chi', 'CARHR209010' => 'chi', 'CARHR229680' => 'chi', 'CARHR249490' => 'chi', 'Carub.0003s0844' => 'cru', 'Carub.0005s2755' => 'cru', 'Carub.0006s0322' => 'cru', 'Carub.0006s3586' => 'cru', 'Carub.0007s1855' => 'cru', 'Ca_07808_v3' => 'car', 'Ca_09535_v3' => 'car', 'Ca_10548_v3' => 'car', 'Ca_19913_v3' => 'car', 'Ca_19916_v3' => 'car', 'Ca_19975_v3' => 'car', 'CBR_g22876' => 'cbr', 'CBR_g22879' => 'cbr', 'CBR_g38491' => 'cbr', 'CBR_g54185' => 'cbr', 'CBR_g54190' => 'cbr', 'Cc02_g11020' => 'ccan', 'Cc02_g23920' => 'ccan', 'Cc02_g39860' => 'ccan', 'Cc02_g39870' => 'ccan', 'Cc03_g06760' => 'ccan', 'Cc06_g02450' => 'ccan', 'Cc09_g09450' => 'ccan', 'CDE02G1959' => 'cde', 'CDE04G0600' => 'cde', 'CDE07G1996' => 'cde', 'CDE07G2078' => 'cde', 'CDE11G0611' => 'cde', 'Cfa001683' => 'cfa', 'Cfa001734' => 'cfa', 'Cfa001737' => 'cfa', 'Cfa003751' => 'cfa', 'Cfa012019' => 'cfa', 'Cfa017353' => 'cfa', 'Cfa017732' => 'cfa', 'Cfa022464' => 'cfa', 'Ciclev10012400m.g' => 'ccl', 'Ciclev10021242m.g' => 'ccl', 'Ciclev10021302m.g' => 'ccl', 'Ciclev10021463m.g' => 'ccl', 'Ciclev10032359m.g' => 'ccl', 'CiPaw.01G081000' => 'cil', 'CiPaw.01G262500' => 'cil', 'CiPaw.01G269800' => 'cil', 'CiPaw.02G168400' => 'cil', 'CiPaw.05G119500' => 'cil', 'CiPaw.11G147300' => 'cil', 'ClCG01G003630' => 'cla', 'ClCG05G000510' => 'cla', 'ClCG05G002300' => 'cla', 'ClCG08G007650' => 'cla', 'ClCG10G021250' => 'cla', 'COL.COLO4_06218' => 'col', 'COL.COLO4_12538' => 'col', 'COL.COLO4_14775' => 'col', 'COL.COLO4_23875' => 'col', 'Cpa.g.sc141.16' => 'cpa', 'Cpa.g.sc169.16' => 'cpa', 'Cpa.g.sc244.4' => 'cpa', 'Cpa.g.sc244.5' => 'cpa', 'Cpa.g.sc29.87' => 'cpa', 'Cpa.g.sc53.115' => 'cpa', 'Cre03.g207502' => 'cre', 'Cre06.g277000' => 'cre', 'Cre09.g394050' => 'cre', 'CsaV3_3G007680' => 'csa', 'CsaV3_3G009710' => 'csa', 'CsaV3_3G034790' => 'csa', 'CsaV3_5G003750' => 'csa', 'CsaV3_6G036620' => 'csa', 'CSS0002288' => 'camsi', 'CSS0011250' => 'camsi', 'CSS0021619' => 'camsi', 'CSS0046701' => 'camsi', 'DCAR_006420' => 'dca', 'DCAR_006865' => 'dca', 'DCAR_008558' => 'dca', 'DCAR_028754' => 'dca', 'DCAR_028755' => 'dca', 'Dinv31218' => 'din', 'Dinv32371' => 'din', 'Dinv34250' => 'din', 'Dinv37156' => 'din', 'Dinv43704' => 'din', 'Duzib093G1811' => 'dzi', 'Duzib106G1622' => 'dzi', 'Duzib114G0504' => 'dzi', 'Duzib128G0338' => 'dzi', 'Duzib128G1577' => 'dzi', 'Duzib133G0104' => 'dzi', 'Duzib133G1080' => 'dzi', 'Duzib138G0324' => 'dzi', 'Duzib138G0394' => 'dzi', 'Duzib205G0122' => 'dzi', 'Duzib268G1020' => 'dzi', 'Duzib268G1359' => 'dzi', 'ECA232G3929' => 'eca', 'ECA236G2210' => 'eca', 'ECA236G2287' => 'eca', 'ECA240G4568' => 'eca', 'ECA247G0894' => 'eca', 'EL10Ac1g00200' => 'bvu', 'EL10Ac1g00886' => 'bvu', 'EL10As1g23091' => 'bvu', 'EL10As1g23092' => 'bvu', 'Eucgr.A01284' => 'egr', 'Eucgr.A01285' => 'egr', 'Eucgr.D02456' => 'egr', 'Eucgr.E00018' => 'egr', 'Eucgr.E01439' => 'egr', 'Eucgr.G02859' => 'egr', 'FAN01G0168' => 'fan', 'FAN01G0453' => 'fan', 'FAN01G2761' => 'fan', 'FAN02G1239' => 'fan', 'FAN03G0645' => 'fan', 'FAN03G2707' => 'fan', 'FAN03G2978' => 'fan', 'FAN04G0227' => 'fan', 'FAN06G0091' => 'fan', 'FAN06G1418' => 'fan', 'FAN06G1512' => 'fan', 'FAN06G1986' => 'fan', 'FAN06G2905' => 'fan', 'FAN06G4325' => 'fan', 'FAN08G0033' => 'fan', 'FAN09G0642' => 'fan', 'FAN10G1763' => 'fan', 'FAN10G2026' => 'fan', 'FAN10G2513' => 'fan', 'FAN10G3402' => 'fan', 'FAN10G3564' => 'fan', 'FAN10G3987' => 'fan', 'FAN13G1490' => 'fan', 'FAN14G5857' => 'fan', 'FAN18G1188' => 'fan', 'FvH4_5g00750' => 'fve', 'FvH4_6g13410' => 'fve', 'FvH4_7g11740' => 'fve', 'FvH4_7g17410' => 'fve', 'FvH4_7g18860' => 'fve', 'Glyma.01G099100' => 'gma', 'Glyma.01G142300' => 'gma', 'Glyma.03G025500' => 'gma', 'Glyma.03G069700' => 'gma', 'Glyma.03G260000' => 'gma', 'Glyma.09G269800' => 'gma', 'Glyma.10G208700' => 'gma', 'Glyma.18G220400' => 'gma', 'Glyma.20G182000' => 'gma', 'Gohir.A01G221726' => 'ghi', 'Gohir.A07G134600' => 'ghi', 'Gohir.A07G146000' => 'ghi', 'Gohir.A08G173900' => 'ghi', 'Gohir.A09G194900' => 'ghi', 'Gohir.A10G204100' => 'ghi', 'Gohir.A11G080600' => 'ghi', 'Gohir.A11G327500' => 'ghi', 'Gohir.A12G101800' => 'ghi', 'Gohir.D01G211200' => 'ghi', 'Gohir.D07G139200' => 'ghi', 'Gohir.D07G152100' => 'ghi', 'Gohir.D08G192600' => 'ghi', 'Gohir.D09G189200' => 'ghi', 'Gohir.D10G212000' => 'ghi', 'Gohir.D11G085200' => 'ghi', 'Gohir.D11G346400' => 'ghi', 'Gohir.D12G104800' => 'ghi', 'Gorai.001G151300' => 'gra', 'Gorai.001G174100' => 'gra', 'Gorai.002G257000' => 'gra', 'Gorai.004G202600' => 'gra', 'Gorai.007G090900' => 'gra', 'Gorai.007G376700' => 'gra', 'Gorai.008G114100' => 'gra', 'Gorai.011G237900' => 'gra', 'GSVIVG01005450001' => 'vvi', 'GSVIVG01016232001' => 'vvi', 'GSVIVG01026157001' => 'vvi', 'GSVIVG01027419001' => 'vvi', 'GSVIVG01027631001' => 'vvi', 'GSVIVG01034143001' => 'vvi', 'HanXRQChr03g0093921' => 'han', 'HanXRQChr04g0120001' => 'han', 'HanXRQChr04g0122561' => 'han', 'HanXRQChr09g0246851' => 'han', 'HanXRQChr10g0293311' => 'han', 'HanXRQChr13g0425231' => 'han', 'HanXRQChr16g0532571' => 'han', 'Haze_09050' => 'cav', 'Haze_15715' => 'cav', 'Haze_15716' => 'cav', 'Haze_16803' => 'cav', 'Haze_16850' => 'cav', 'Hma1.2p1_0301F.1_g118655' => 'hma', 'Hma1.2p1_0309F.1_g120590' => 'hma', 'Hma1.2p1_0936F.1_g238900' => 'hma', 'Hma1.2p1_3552F.1_g336740' => 'hma', 'HPP92_003520' => 'vpl', 'HPP92_006628' => 'vpl', 'HPP92_006645' => 'vpl', 'HPP92_014669' => 'vpl', 'HPP92_015077' => 'vpl', 'Hund16742' => 'sun', 'Hund17022' => 'sun', 'Lalb_Chr02g0152131' => 'lal', 'Lalb_Chr05g0225371' => 'lal', 'Lalb_Chr07g0189841' => 'lal', 'Lalb_Chr07g0192961' => 'lal', 'Lalb_Chr12g0208221' => 'lal', 'Lalb_Chr13g0291211' => 'lal', 'Lalb_Chr13g0291781' => 'lal', 'Lalb_Chr18g0044651' => 'lal', 'Lalb_Chr21g0313731' => 'lal', 'Lj1g0022533' => 'lja', 'Lj2A18T50' => 'lonja', 'Lj2A92G93' => 'lonja', 'Lj3A965T73' => 'lonja', 'Lj3g0000673' => 'lja', 'Lj3g0002666' => 'lja', 'Lj4g0016985' => 'lja', 'Lj5g0003625' => 'lja', 'Lj7A529G36' => 'lonja', 'Lj9A569T49' => 'lonja', 'Lj9A604T63' => 'lonja', 'Lsat_1_v5_gn_3_132060' => 'lsa', 'Lsat_1_v5_gn_4_68941' => 'lsa', 'Lsat_1_v5_gn_5_95580' => 'lsa', 'Lsat_1_v5_gn_7_161' => 'lsa', 'Lsat_1_v5_gn_7_7041' => 'lsa', 'Lsat_1_v5_gn_9_33481' => 'lsa', 'Lsat_1_v5_gn_9_68260' => 'lsa', 'Manes.01G073100' => 'mes', 'Manes.01G266300' => 'mes', 'Manes.02G033300' => 'mes', 'Manes.05G017900' => 'mes', 'Manes.05G046100' => 'mes', 'Manes.08G080900' => 'mes', 'Manes.10G049400' => 'mes', 'Mapoly0009s0186' => 'mpo', 'Mapoly0036s0118' => 'mpo', 'Mapoly0101s0046' => 'mpo', 'MBI04_g30218_MAGBIO' => 'mbi', 'MBI04_g35564_MAGBIO' => 'mbi', 'MBI12_g34011_MAGBIO' => 'mbi', 'MBI14_g04655_MAGBIO' => 'mbi', 'MCO07G653' => 'mco', 'MCO10G173' => 'mco', 'MD01G1087100' => 'mdo', 'MD01G1104200' => 'mdo', 'MD02G1205100' => 'mdo', 'MD04G1079200' => 'mdo', 'MD04G1131400' => 'mdo', 'MD07G1121600' => 'mdo', 'MD07G1157300' => 'mdo', 'MD07G1171000' => 'mdo', 'MD12G1144500' => 'mdo', 'Medtr1g094610' => 'mtr', 'Medtr4g021795' => 'mtr', 'Medtr4g023760' => 'mtr', 'Medtr7g118050' => 'mtr', 'MELO3C005582.2' => 'cme', 'MELO3C005989.2' => 'cme', 'MELO3C006192.2' => 'cme', 'MELO3C009248.2' => 'cme', 'MELO3C019817.2' => 'cme', 'Migut.B01625' => 'egut', 'Migut.B01915' => 'egut', 'Migut.F01721' => 'egut', 'Migut.J00314' => 'egut', 'MSTRG.20742' => 'ama', 'MSTRG.8134' => 'ama', 'Nitab4.5_0000096g0010' => 'nta', 'Nitab4.5_0000202g0030' => 'nta', 'Nitab4.5_0000216g0370' => 'nta', 'Nitab4.5_0000457g0230' => 'nta', 'Nitab4.5_0001702g0170' => 'nta', 'Nitab4.5_0003607g0010' => 'nta', 'Nitab4.5_0004917g0020' => 'nta', 'Nitab4.5_0007059g0010' => 'nta', 'Nitab4.5_0007184g0010' => 'nta', 'Nitab4.5_0007346g0020' => 'nta', 'Nn1g00410' => 'nnu', 'Nn1g01252' => 'nnu', 'Nn2g11168' => 'nnu', 'Nn2g13403' => 'nnu', 'Nn2g13760' => 'nnu', 'Nn4g26380' => 'nnu', 'Oeu000806.2' => 'oeu', 'Oeu005788.1' => 'oeu', 'Oeu006900.3' => 'oeu', 'Oeu007797.1' => 'oeu', 'Oeu011932.1' => 'oeu', 'Oeu022739.1' => 'oeu', 'Oeu037918.1' => 'oeu', 'Oeu055490.2' => 'oeu', 'Os01g0844400' => 'osa', 'Os02g0819100' => 'osa', 'Os03g0804300' => 'osa', 'Os05g0458000' => 'osa', 'Os07g0467800' => 'osa', 'Os12g0602200' => 'osa', 'Peaxi162Scf00013g03444' => 'pax', 'Peaxi162Scf00094g01120' => 'pax', 'Peaxi162Scf00191g01211' => 'pax', 'Peaxi162Scf00238g01110' => 'pax', 'Peaxi162Scf00330g00719' => 'pax', 'Peaxi162Scf00627g00018' => 'pax', 'PGR031G2686' => 'pgr', 'PGR042G0809' => 'pgr', 'PGR142G0193' => 'pgr', 'PGSC0003DMG400011066' => 'stu', 'PGSC0003DMG400012041' => 'stu', 'PGSC0003DMG400013678' => 'stu', 'PGSC0003DMG400023477' => 'stu', 'PGSC0003DMG400025956' => 'stu', 'PGSC0003DMG401019151' => 'stu', 'Phvul.006G116400' => 'pvu', 'Phvul.007G097300' => 'pvu', 'Phvul.010G015000' => 'pvu', 'Phvul.010G083900' => 'pvu', 'Potri.001G117100' => 'ptr', 'Potri.002G147300' => 'ptr', 'Potri.003G115600' => 'ptr', 'Potri.006G087400' => 'ptr', 'Potri.010G226100' => 'ptr', 'Potri.014G069200' => 'ptr', 'Potri.014G104000' => 'ptr', 'Potri.016G100200' => 'ptr', 'Pp3c10_20450' => 'ppa', 'Pp3c1_42400' => 'ppa', 'Pp3c3_24390' => 'ppa', 'Pp3c3_2860' => 'ppa', 'PRCOL_00003193' => 'pco', 'Prupe.2G144500' => 'ppe', 'Prupe.2G195700' => 'ppe', 'Prupe.2G209800' => 'ppe', 'Prupe.5G080000' => 'ppe', 'Prupe.6G257900' => 'ppe', 'Psat3g001160' => 'psa', 'Psat6g181880' => 'psa', 'Psat7g233720' => 'psa', 'PSO063G7587' => 'pso', 'PSO339G2145' => 'pso', 'PSO339G3369' => 'pso', 'PSO478G2747' => 'pso', 'PSO513G0140' => 'pso', 'PSO782G1614' => 'pso', 'PSO782G4889' => 'pso', 'PSO782G5485' => 'pso', 'PSO801G0241' => 'pso', 'QL07p048854' => 'qlo', 'QL08p046745' => 'qlo', 'QL08p052606' => 'qlo', 'QL08p053414' => 'qlo', 'QL08p054868' => 'qlo', 'RcHm_v2.0_Chr1g0350251' => 'rch', 'RcHm_v2.0_Chr1g0360851' => 'rch', 'RcHm_v2.0_Chr1g0362791' => 'rch', 'RcHm_v2.0_Chr3g0466281' => 'rch', 'RcHm_v2.0_Chr7g0201481' => 'rch', 'Rhsim01G0148600' => 'rsi', 'Rhsim05G0194400' => 'rsi', 'Rhsim07G0000700' => 'rsi', 'Rhsim07G0000800' => 'rsi', 'Rhsim07G0027900' => 'rsi', 'Rhsim09G0149500' => 'rsi', 'RhsimUnG0186900' => 'rsi', 'Sabra01G0089900' => 'sbr', 'Sabra02G0114700' => 'sbr', 'Sabra02G0116300' => 'sbr', 'Sabra03G0080100' => 'sbr', 'Sabra08G0024300' => 'sbr', 'Sabra10G0174300' => 'sbr', 'Sabra14G0048900' => 'sbr', 'Sabra14G0076500' => 'sbr', 'SalBow5G2513' => 'sbo', 'Sc01g0002300' => 'sci', 'Sc01g0004450' => 'sci', 'Sc06g0001680' => 'sci', 'Sc23g0003580' => 'sci', 'Sed0000913' => 'sed', 'Sed0001655' => 'sed', 'Sed0007745' => 'sed', 'Sed0010951' => 'sed', 'Sed0017599' => 'sed', 'Sed0021405' => 'sed', 'Sed0022810' => 'sed', 'SEGI_07099' => 'sgi', 'SEGI_11931' => 'sgi', 'SEGI_13187' => 'sgi', 'SEGI_29958' => 'sgi', 'SEGI_36351' => 'sgi', 'SGA_v2.0_scaffold126G33770' => 'sas', 'SGA_v2.0_scaffold153G37003' => 'sas', 'SGA_v2.0_scaffold2G01359' => 'sas', 'SGA_v2.0_scaffold5G03064' => 'sas', 'SGA_v2.0_scaffold95G28903' => 'sas', 'SHI12701' => 'shi', 'SHI26410' => 'shi', 'SHI38997' => 'shi', 'SHI53759' => 'shi', 'SHI53886' => 'shi', 'SHI54714' => 'shi', 'SMO011G0041' => 'smo', 'SMO146G0251' => 'smo', 'SMO160G0004' => 'smo', 'SMO174G0057' => 'smo', 'SMO244G0089' => 'smo', 'SMO296G0011' => 'smo', 'Solyc01g091280.3' => 'sly', 'Solyc05g047610.3' => 'sly', 'Solyc05g047640.3' => 'sly', 'Solyc05g055630.3' => 'sly', 'Solyc10g018160.2' => 'sly', 'Solyc10g084820.2' => 'sly', 'Solyc10g086565.2' => 'sly', 'Sopen01g037030' => 'spe', 'Sopen05g027920' => 'spe', 'Sopen05g034070' => 'spe', 'Sopen10g007260' => 'spe', 'Sopen10g034260' => 'spe', 'Sopen10g035950' => 'spe', 'Sp3g07710' => 'spa', 'Sp4g27420' => 'spa', 'Sp5g02450' => 'spa', 'Sp6g01280' => 'spa', 'Sp6g38480' => 'spa', 'Sp7g20780' => 'spa', 'TAR374G1413' => 'tar', 'TAR623G1777' => 'tar', 'TAR629G2370' => 'tar', 'TAR633G1759' => 'tar', 'TAR636G3387' => 'tar', 'THA.LOC104802447' => 'tha', 'THA.LOC104813916' => 'tha', 'THA.LOC104816423' => 'tha', 'THA.LOC104817246' => 'tha', 'THA.LOC104825895' => 'tha', 'Thecc.01G335200' => 'tca', 'Thecc.01G377400' => 'tca', 'Thecc.03G262200' => 'tca', 'Thecc.05G036800' => 'tca', 'Thecc.10G080500' => 'tca', 'Thecc.10G080800' => 'tca', 'Thhalv10001560m.g' => 'esa', 'Thhalv10006120m.g' => 'esa', 'Thhalv10014375m.g' => 'esa', 'Thhalv10021264m.g' => 'esa', 'Thhalv10028856m.g' => 'esa', 'TPR.G1914' => 'tpr', 'TPR.G4757' => 'tpr', 'TPR.G5595' => 'tpr', 'TWI14G0952' => 'twi', 'TWI14G1307' => 'twi', 'TWI38G2143' => 'twi', 'TWI59G0826' => 'twi', 'TWI77G0527' => 'twi', 'TWI81G0150' => 'twi', 'unitig_21.g21018' => 'ugi', 'unitig_26.g9725' => 'ugi', 'unitig_744.g24653' => 'ugi', 'unitig_749.g13778' => 'ugi', 'unitig_899.g15035' => 'ugi', 'vmacro04296' => 'vma', 'vmacro04852' => 'vma', 'vmacro13404' => 'vma', 'vmacro20169' => 'vma', 'vmacro21014' => 'vma', 'VMungo0331G0237' => 'vmu', 'VMungo0331G0706' => 'vmu', 'VMungo0331G1361' => 'vmu', 'VMungo0331G1489' => 'vmu', 'VMungo0540G1037' => 'vmu', 'VMungo0720G2487' => 'vmu', 'VMungo0720G2721' => 'vmu', 'Zm00001eb086860' => 'zma', 'Zm00001eb104760' => 'zma', 'Zm00001eb148220' => 'zma', 'Zm00001eb259030' => 'zma', 'Zm00001eb289590' => 'zma', 'Zm00001eb420150' => 'zma' ), 'gf_id' => 'HOM05D000968', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000968' ), 'data_identifier' => 'HOM05D000968', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000968', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p31690' => 'bna', 'A03p36040' => 'bna', 'A03p53730' => 'bna', 'A04p01410' => 'bna', 'A05p05420' => 'bna', 'A05p39630' => 'bna', 'A05p39640' => 'bna', 'A09p00970' => 'bna', 'A09p53060' => 'bna', 'A10p31890' => 'bna', 'Aa31LG10G15040' => 'aar', 'Aa31LG1G21090' => 'aar', 'Aa31LG1G26900' => 'aar', 'Aa31LG3G1820' => 'aar', 'Aa31LG5G1100' => 'aar', 'Aa31LG6G4740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2265' => 'aag', 'Actinidia07998' => 'ach', 'Actinidia11266' => 'ach', 'Actinidia12682' => 'ach', 'Actinidia26479' => 'ach', 'Actinidia31406' => 'ach', 'Actinidia32437' => 'ach', 'Actinidia38862' => 'ach', 'Ah.05g174230' => 'amhyb', 'Ah.05g179070' => 'amhyb', 'Ah.05g179090' => 'amhyb', 'Ah.12g059950' => 'amhyb', 'AL3G20480' => 'aly', 'AL4G44520' => 'aly', 'AL5G43110' => 'aly', 'AL6G13890' => 'aly', 'AL6G52620' => 'aly', 'AL7G30830' => 'aly', 'Aqoxy1G00899' => 'aox', 'Aqoxy5G04333' => 'aox', 'Aqoxy7G00641' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3IZ0NN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4EF6AW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W9P8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79GA3M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C43NQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFCU6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G95YVJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCHK29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LU1UG8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX91RN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGB4B1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8DA0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9H7JI' => 'arhy', 'AT3G09320' => 'ath', 'AT3G60800' => 'ath', 'AT4G00840' => 'ath', 'AT4G22750' => 'ath', 'AT5G04270' => 'ath', 'ATR0090G003' => 'atr', 'ATR0559G349' => 'atr', 'ATR0680G261' => 'atr', 'ATR0810G048' => 'atr', 'Atru.chr12.831' => 'acertr', 'Atru.chr5.303' => 'acertr', 'Atru.chr5.748' => 'acertr', 'Atru.chr8.1999' => 'acertr', 'Atru.chr9.1436' => 'acertr', 'AUR62004211' => 'cqu', 'AUR62004548' => 'cqu', 'AUR62013637' => 'cqu', 'AUR62022662' => 'cqu', 'AUR62025777' => 'cqu', 'AUR62042386' => 'cqu', 'BcaB01g02310' => 'bca', 'BcaB01g06062' => 'bca', 'BcaB02g08975' => 'bca', 'BcaB02g08980' => 'bca', 'BcaC01g04228' => 'bca', 'BcaC01g06830' => 'bca', 'BcaC02g10186' => 'bca', 'BcaC02g12214' => 'bca', 'BcaC04g24101' => 'bca', 'BcaC05g29520' => 'bca', 'BcaC05g29661' => 'bca', 'BcaC06g32130' => 'bca', 'BcaC06g32131' => 'bca', 'BcaC07g40601' => 'bca', 'BcaC07g42641' => 'bca', 'BcaNung01038' => 'bca', 'BcaNung01676' => 'bca', 'BcaNung02480' => 'bca', 'BcaNung07376' => 'bca', 'BolC3t16146H' => 'bol', 'BolC3t16637H' => 'bol', 'BolC4t22257H' => 'bol', 'BolC4t24728H' => 'bol', 'BolC5t34517H' => 'bol', 'BolC7t45703H' => 'bol', 'BolC8t51166H' => 'bol', 'BolC9t53038H' => 'bol', 'BolC9t60000H' => 'bol', 'BraA01t01345Z' => 'bra', 'BraA01t01346Z' => 'bra', 'BraA01t01348Z' => 'bra', 'BraA03t12347Z' => 'bra', 'BraA03t12775Z' => 'bra', 'BraA03t14439Z' => 'bra', 'BraA04t15860Z' => 'bra', 'BraA05t19511Z' => 'bra', 'BraA05t22746Z' => 'bra', 'BraA09t35767Z' => 'bra', 'BraA09t40732Z' => 'bra', 'BraA10t45233Z' => 'bra', 'C03p38720' => 'bna', 'C03p43680' => 'bna', 'C04p06350' => 'bna', 'C04p31800' => 'bna', 'C05p58680' => 'bna', 'C07p52110' => 'bna', 'C08p35760' => 'bna', 'C09p01050' => 'bna', 'C09p72600' => 'bna', 'CAN.G106.2' => 'can', 'CAN.G1482.1' => 'can', 'CAN.G324.12' => 'can', 'CAN.G388.20' => 'can', 'CAN.G412.7' => 'can', 'CAN.G694.32' => 'can', 'CAN.G92.12' => 'can', 'CANSAT11G2353' => 'cansat', 'CANSAT21G1398' => 'cansat', 'CANSAT56G2456' => 'cansat', 'CANSAT56G3031' => 'cansat', 'CANSAT56G4539' => 'cansat', 'CARHR083680' => 'chi', 'CARHR171190' => 'chi', 'CARHR209010' => 'chi', 'CARHR229680' => 'chi', 'CARHR249490' => 'chi', 'Carub.0003s0844' => 'cru', 'Carub.0005s2755' => 'cru', 'Carub.0006s0322' => 'cru', 'Carub.0006s3586' => 'cru', 'Carub.0007s1855' => 'cru', 'Ca_07808_v3' => 'car', 'Ca_09535_v3' => 'car', 'Ca_10548_v3' => 'car', 'Ca_19913_v3' => 'car', 'Ca_19916_v3' => 'car', 'Ca_19975_v3' => 'car', 'CBR_g22876' => 'cbr', 'CBR_g22879' => 'cbr', 'CBR_g38491' => 'cbr', 'CBR_g54185' => 'cbr', 'CBR_g54190' => 'cbr', 'Cc02_g11020' => 'ccan', 'Cc02_g23920' => 'ccan', 'Cc02_g39860' => 'ccan', 'Cc02_g39870' => 'ccan', 'Cc03_g06760' => 'ccan', 'Cc06_g02450' => 'ccan', 'Cc09_g09450' => 'ccan', 'CDE02G1959' => 'cde', 'CDE04G0600' => 'cde', 'CDE07G1996' => 'cde', 'CDE07G2078' => 'cde', 'CDE11G0611' => 'cde', 'Cfa001683' => 'cfa', 'Cfa001734' => 'cfa', 'Cfa001737' => 'cfa', 'Cfa003751' => 'cfa', 'Cfa012019' => 'cfa', 'Cfa017353' => 'cfa', 'Cfa017732' => 'cfa', 'Cfa022464' => 'cfa', 'Ciclev10012400m.g' => 'ccl', 'Ciclev10021242m.g' => 'ccl', 'Ciclev10021302m.g' => 'ccl', 'Ciclev10021463m.g' => 'ccl', 'Ciclev10032359m.g' => 'ccl', 'CiPaw.01G081000' => 'cil', 'CiPaw.01G262500' => 'cil', 'CiPaw.01G269800' => 'cil', 'CiPaw.02G168400' => 'cil', 'CiPaw.05G119500' => 'cil', 'CiPaw.11G147300' => 'cil', 'ClCG01G003630' => 'cla', 'ClCG05G000510' => 'cla', 'ClCG05G002300' => 'cla', 'ClCG08G007650' => 'cla', 'ClCG10G021250' => 'cla', 'COL.COLO4_06218' => 'col', 'COL.COLO4_12538' => 'col', 'COL.COLO4_14775' => 'col', 'COL.COLO4_23875' => 'col', 'Cpa.g.sc141.16' => 'cpa', 'Cpa.g.sc169.16' => 'cpa', 'Cpa.g.sc244.4' => 'cpa', 'Cpa.g.sc244.5' => 'cpa', 'Cpa.g.sc29.87' => 'cpa', 'Cpa.g.sc53.115' => 'cpa', 'Cre03.g207502' => 'cre', 'Cre06.g277000' => 'cre', 'Cre09.g394050' => 'cre', 'CsaV3_3G007680' => 'csa', 'CsaV3_3G009710' => 'csa', 'CsaV3_3G034790' => 'csa', 'CsaV3_5G003750' => 'csa', 'CsaV3_6G036620' => 'csa', 'CSS0002288' => 'camsi', 'CSS0011250' => 'camsi', 'CSS0021619' => 'camsi', 'CSS0046701' => 'camsi', 'DCAR_006420' => 'dca', 'DCAR_006865' => 'dca', 'DCAR_008558' => 'dca', 'DCAR_028754' => 'dca', 'DCAR_028755' => 'dca', 'Dinv31218' => 'din', 'Dinv32371' => 'din', 'Dinv34250' => 'din', 'Dinv37156' => 'din', 'Dinv43704' => 'din', 'Duzib093G1811' => 'dzi', 'Duzib106G1622' => 'dzi', 'Duzib114G0504' => 'dzi', 'Duzib128G0338' => 'dzi', 'Duzib128G1577' => 'dzi', 'Duzib133G0104' => 'dzi', 'Duzib133G1080' => 'dzi', 'Duzib138G0324' => 'dzi', 'Duzib138G0394' => 'dzi', 'Duzib205G0122' => 'dzi', 'Duzib268G1020' => 'dzi', 'Duzib268G1359' => 'dzi', 'ECA232G3929' => 'eca', 'ECA236G2210' => 'eca', 'ECA236G2287' => 'eca', 'ECA240G4568' => 'eca', 'ECA247G0894' => 'eca', 'EL10Ac1g00200' => 'bvu', 'EL10Ac1g00886' => 'bvu', 'EL10As1g23091' => 'bvu', 'EL10As1g23092' => 'bvu', 'Eucgr.A01284' => 'egr', 'Eucgr.A01285' => 'egr', 'Eucgr.D02456' => 'egr', 'Eucgr.E00018' => 'egr', 'Eucgr.E01439' => 'egr', 'Eucgr.G02859' => 'egr', 'FAN01G0168' => 'fan', 'FAN01G0453' => 'fan', 'FAN01G2761' => 'fan', 'FAN02G1239' => 'fan', 'FAN03G0645' => 'fan', 'FAN03G2707' => 'fan', 'FAN03G2978' => 'fan', 'FAN04G0227' => 'fan', 'FAN06G0091' => 'fan', 'FAN06G1418' => 'fan', 'FAN06G1512' => 'fan', 'FAN06G1986' => 'fan', 'FAN06G2905' => 'fan', 'FAN06G4325' => 'fan', 'FAN08G0033' => 'fan', 'FAN09G0642' => 'fan', 'FAN10G1763' => 'fan', 'FAN10G2026' => 'fan', 'FAN10G2513' => 'fan', 'FAN10G3402' => 'fan', 'FAN10G3564' => 'fan', 'FAN10G3987' => 'fan', 'FAN13G1490' => 'fan', 'FAN14G5857' => 'fan', 'FAN18G1188' => 'fan', 'FvH4_5g00750' => 'fve', 'FvH4_6g13410' => 'fve', 'FvH4_7g11740' => 'fve', 'FvH4_7g17410' => 'fve', 'FvH4_7g18860' => 'fve', 'Glyma.01G099100' => 'gma', 'Glyma.01G142300' => 'gma', 'Glyma.03G025500' => 'gma', 'Glyma.03G069700' => 'gma', 'Glyma.03G260000' => 'gma', 'Glyma.09G269800' => 'gma', 'Glyma.10G208700' => 'gma', 'Glyma.18G220400' => 'gma', 'Glyma.20G182000' => 'gma', 'Gohir.A01G221726' => 'ghi', 'Gohir.A07G134600' => 'ghi', 'Gohir.A07G146000' => 'ghi', 'Gohir.A08G173900' => 'ghi', 'Gohir.A09G194900' => 'ghi', 'Gohir.A10G204100' => 'ghi', 'Gohir.A11G080600' => 'ghi', 'Gohir.A11G327500' => 'ghi', 'Gohir.A12G101800' => 'ghi', 'Gohir.D01G211200' => 'ghi', 'Gohir.D07G139200' => 'ghi', 'Gohir.D07G152100' => 'ghi', 'Gohir.D08G192600' => 'ghi', 'Gohir.D09G189200' => 'ghi', 'Gohir.D10G212000' => 'ghi', 'Gohir.D11G085200' => 'ghi', 'Gohir.D11G346400' => 'ghi', 'Gohir.D12G104800' => 'ghi', 'Gorai.001G151300' => 'gra', 'Gorai.001G174100' => 'gra', 'Gorai.002G257000' => 'gra', 'Gorai.004G202600' => 'gra', 'Gorai.007G090900' => 'gra', 'Gorai.007G376700' => 'gra', 'Gorai.008G114100' => 'gra', 'Gorai.011G237900' => 'gra', 'GSVIVG01005450001' => 'vvi', 'GSVIVG01016232001' => 'vvi', 'GSVIVG01026157001' => 'vvi', 'GSVIVG01027419001' => 'vvi', 'GSVIVG01027631001' => 'vvi', 'GSVIVG01034143001' => 'vvi', 'HanXRQChr03g0093921' => 'han', 'HanXRQChr04g0120001' => 'han', 'HanXRQChr04g0122561' => 'han', 'HanXRQChr09g0246851' => 'han', 'HanXRQChr10g0293311' => 'han', 'HanXRQChr13g0425231' => 'han', 'HanXRQChr16g0532571' => 'han', 'Haze_09050' => 'cav', 'Haze_15715' => 'cav', 'Haze_15716' => 'cav', 'Haze_16803' => 'cav', 'Haze_16850' => 'cav', 'Hma1.2p1_0301F.1_g118655' => 'hma', 'Hma1.2p1_0309F.1_g120590' => 'hma', 'Hma1.2p1_0936F.1_g238900' => 'hma', 'Hma1.2p1_3552F.1_g336740' => 'hma', 'HPP92_003520' => 'vpl', 'HPP92_006628' => 'vpl', 'HPP92_006645' => 'vpl', 'HPP92_014669' => 'vpl', 'HPP92_015077' => 'vpl', 'Hund16742' => 'sun', 'Hund17022' => 'sun', 'Lalb_Chr02g0152131' => 'lal', 'Lalb_Chr05g0225371' => 'lal', 'Lalb_Chr07g0189841' => 'lal', 'Lalb_Chr07g0192961' => 'lal', 'Lalb_Chr12g0208221' => 'lal', 'Lalb_Chr13g0291211' => 'lal', 'Lalb_Chr13g0291781' => 'lal', 'Lalb_Chr18g0044651' => 'lal', 'Lalb_Chr21g0313731' => 'lal', 'Lj1g0022533' => 'lja', 'Lj2A18T50' => 'lonja', 'Lj2A92G93' => 'lonja', 'Lj3A965T73' => 'lonja', 'Lj3g0000673' => 'lja', 'Lj3g0002666' => 'lja', 'Lj4g0016985' => 'lja', 'Lj5g0003625' => 'lja', 'Lj7A529G36' => 'lonja', 'Lj9A569T49' => 'lonja', 'Lj9A604T63' => 'lonja', 'Lsat_1_v5_gn_3_132060' => 'lsa', 'Lsat_1_v5_gn_4_68941' => 'lsa', 'Lsat_1_v5_gn_5_95580' => 'lsa', 'Lsat_1_v5_gn_7_161' => 'lsa', 'Lsat_1_v5_gn_7_7041' => 'lsa', 'Lsat_1_v5_gn_9_33481' => 'lsa', 'Lsat_1_v5_gn_9_68260' => 'lsa', 'Manes.01G073100' => 'mes', 'Manes.01G266300' => 'mes', 'Manes.02G033300' => 'mes', 'Manes.05G017900' => 'mes', 'Manes.05G046100' => 'mes', 'Manes.08G080900' => 'mes', 'Manes.10G049400' => 'mes', 'Mapoly0009s0186' => 'mpo', 'Mapoly0036s0118' => 'mpo', 'Mapoly0101s0046' => 'mpo', 'MBI04_g30218_MAGBIO' => 'mbi', 'MBI04_g35564_MAGBIO' => 'mbi', 'MBI12_g34011_MAGBIO' => 'mbi', 'MBI14_g04655_MAGBIO' => 'mbi', 'MCO07G653' => 'mco', 'MCO10G173' => 'mco', 'MD01G1087100' => 'mdo', 'MD01G1104200' => 'mdo', 'MD02G1205100' => 'mdo', 'MD04G1079200' => 'mdo', 'MD04G1131400' => 'mdo', 'MD07G1121600' => 'mdo', 'MD07G1157300' => 'mdo', 'MD07G1171000' => 'mdo', 'MD12G1144500' => 'mdo', 'Medtr1g094610' => 'mtr', 'Medtr4g021795' => 'mtr', 'Medtr4g023760' => 'mtr', 'Medtr7g118050' => 'mtr', 'MELO3C005582.2' => 'cme', 'MELO3C005989.2' => 'cme', 'MELO3C006192.2' => 'cme', 'MELO3C009248.2' => 'cme', 'MELO3C019817.2' => 'cme', 'Migut.B01625' => 'egut', 'Migut.B01915' => 'egut', 'Migut.F01721' => 'egut', 'Migut.J00314' => 'egut', 'MSTRG.20742' => 'ama', 'MSTRG.8134' => 'ama', 'Nitab4.5_0000096g0010' => 'nta', 'Nitab4.5_0000202g0030' => 'nta', 'Nitab4.5_0000216g0370' => 'nta', 'Nitab4.5_0000457g0230' => 'nta', 'Nitab4.5_0001702g0170' => 'nta', 'Nitab4.5_0003607g0010' => 'nta', 'Nitab4.5_0004917g0020' => 'nta', 'Nitab4.5_0007059g0010' => 'nta', 'Nitab4.5_0007184g0010' => 'nta', 'Nitab4.5_0007346g0020' => 'nta', 'Nn1g00410' => 'nnu', 'Nn1g01252' => 'nnu', 'Nn2g11168' => 'nnu', 'Nn2g13403' => 'nnu', 'Nn2g13760' => 'nnu', 'Nn4g26380' => 'nnu', 'Oeu000806.2' => 'oeu', 'Oeu005788.1' => 'oeu', 'Oeu006900.3' => 'oeu', 'Oeu007797.1' => 'oeu', 'Oeu011932.1' => 'oeu', 'Oeu022739.1' => 'oeu', 'Oeu037918.1' => 'oeu', 'Oeu055490.2' => 'oeu', 'Os01g0844400' => 'osa', 'Os02g0819100' => 'osa', 'Os03g0804300' => 'osa', 'Os05g0458000' => 'osa', 'Os07g0467800' => 'osa', 'Os12g0602200' => 'osa', 'Peaxi162Scf00013g03444' => 'pax', 'Peaxi162Scf00094g01120' => 'pax', 'Peaxi162Scf00191g01211' => 'pax', 'Peaxi162Scf00238g01110' => 'pax', 'Peaxi162Scf00330g00719' => 'pax', 'Peaxi162Scf00627g00018' => 'pax', 'PGR031G2686' => 'pgr', 'PGR042G0809' => 'pgr', 'PGR142G0193' => 'pgr', 'PGSC0003DMG400011066' => 'stu', 'PGSC0003DMG400012041' => 'stu', 'PGSC0003DMG400013678' => 'stu', 'PGSC0003DMG400023477' => 'stu', 'PGSC0003DMG400025956' => 'stu', 'PGSC0003DMG401019151' => 'stu', 'Phvul.006G116400' => 'pvu', 'Phvul.007G097300' => 'pvu', 'Phvul.010G015000' => 'pvu', 'Phvul.010G083900' => 'pvu', 'Potri.001G117100' => 'ptr', 'Potri.002G147300' => 'ptr', 'Potri.003G115600' => 'ptr', 'Potri.006G087400' => 'ptr', 'Potri.010G226100' => 'ptr', 'Potri.014G069200' => 'ptr', 'Potri.014G104000' => 'ptr', 'Potri.016G100200' => 'ptr', 'Pp3c10_20450' => 'ppa', 'Pp3c1_42400' => 'ppa', 'Pp3c3_24390' => 'ppa', 'Pp3c3_2860' => 'ppa', 'PRCOL_00003193' => 'pco', 'Prupe.2G144500' => 'ppe', 'Prupe.2G195700' => 'ppe', 'Prupe.2G209800' => 'ppe', 'Prupe.5G080000' => 'ppe', 'Prupe.6G257900' => 'ppe', 'Psat3g001160' => 'psa', 'Psat6g181880' => 'psa', 'Psat7g233720' => 'psa', 'PSO063G7587' => 'pso', 'PSO339G2145' => 'pso', 'PSO339G3369' => 'pso', 'PSO478G2747' => 'pso', 'PSO513G0140' => 'pso', 'PSO782G1614' => 'pso', 'PSO782G4889' => 'pso', 'PSO782G5485' => 'pso', 'PSO801G0241' => 'pso', 'QL07p048854' => 'qlo', 'QL08p046745' => 'qlo', 'QL08p052606' => 'qlo', 'QL08p053414' => 'qlo', 'QL08p054868' => 'qlo', 'RcHm_v2.0_Chr1g0350251' => 'rch', 'RcHm_v2.0_Chr1g0360851' => 'rch', 'RcHm_v2.0_Chr1g0362791' => 'rch', 'RcHm_v2.0_Chr3g0466281' => 'rch', 'RcHm_v2.0_Chr7g0201481' => 'rch', 'Rhsim01G0148600' => 'rsi', 'Rhsim05G0194400' => 'rsi', 'Rhsim07G0000700' => 'rsi', 'Rhsim07G0000800' => 'rsi', 'Rhsim07G0027900' => 'rsi', 'Rhsim09G0149500' => 'rsi', 'RhsimUnG0186900' => 'rsi', 'Sabra01G0089900' => 'sbr', 'Sabra02G0114700' => 'sbr', 'Sabra02G0116300' => 'sbr', 'Sabra03G0080100' => 'sbr', 'Sabra08G0024300' => 'sbr', 'Sabra10G0174300' => 'sbr', 'Sabra14G0048900' => 'sbr', 'Sabra14G0076500' => 'sbr', 'SalBow5G2513' => 'sbo', 'Sc01g0002300' => 'sci', 'Sc01g0004450' => 'sci', 'Sc06g0001680' => 'sci', 'Sc23g0003580' => 'sci', 'Sed0000913' => 'sed', 'Sed0001655' => 'sed', 'Sed0007745' => 'sed', 'Sed0010951' => 'sed', 'Sed0017599' => 'sed', 'Sed0021405' => 'sed', 'Sed0022810' => 'sed', 'SEGI_07099' => 'sgi', 'SEGI_11931' => 'sgi', 'SEGI_13187' => 'sgi', 'SEGI_29958' => 'sgi', 'SEGI_36351' => 'sgi', 'SGA_v2.0_scaffold126G33770' => 'sas', 'SGA_v2.0_scaffold153G37003' => 'sas', 'SGA_v2.0_scaffold2G01359' => 'sas', 'SGA_v2.0_scaffold5G03064' => 'sas', 'SGA_v2.0_scaffold95G28903' => 'sas', 'SHI12701' => 'shi', 'SHI26410' => 'shi', 'SHI38997' => 'shi', 'SHI53759' => 'shi', 'SHI53886' => 'shi', 'SHI54714' => 'shi', 'SMO011G0041' => 'smo', 'SMO146G0251' => 'smo', 'SMO160G0004' => 'smo', 'SMO174G0057' => 'smo', 'SMO244G0089' => 'smo', 'SMO296G0011' => 'smo', 'Solyc01g091280.3' => 'sly', 'Solyc05g047610.3' => 'sly', 'Solyc05g047640.3' => 'sly', 'Solyc05g055630.3' => 'sly', 'Solyc10g018160.2' => 'sly', 'Solyc10g084820.2' => 'sly', 'Solyc10g086565.2' => 'sly', 'Sopen01g037030' => 'spe', 'Sopen05g027920' => 'spe', 'Sopen05g034070' => 'spe', 'Sopen10g007260' => 'spe', 'Sopen10g034260' => 'spe', 'Sopen10g035950' => 'spe', 'Sp3g07710' => 'spa', 'Sp4g27420' => 'spa', 'Sp5g02450' => 'spa', 'Sp6g01280' => 'spa', 'Sp6g38480' => 'spa', 'Sp7g20780' => 'spa', 'TAR374G1413' => 'tar', 'TAR623G1777' => 'tar', 'TAR629G2370' => 'tar', 'TAR633G1759' => 'tar', 'TAR636G3387' => 'tar', 'THA.LOC104802447' => 'tha', 'THA.LOC104813916' => 'tha', 'THA.LOC104816423' => 'tha', 'THA.LOC104817246' => 'tha', 'THA.LOC104825895' => 'tha', 'Thecc.01G335200' => 'tca', 'Thecc.01G377400' => 'tca', 'Thecc.03G262200' => 'tca', 'Thecc.05G036800' => 'tca', 'Thecc.10G080500' => 'tca', 'Thecc.10G080800' => 'tca', 'Thhalv10001560m.g' => 'esa', 'Thhalv10006120m.g' => 'esa', 'Thhalv10014375m.g' => 'esa', 'Thhalv10021264m.g' => 'esa', 'Thhalv10028856m.g' => 'esa', 'TPR.G1914' => 'tpr', 'TPR.G4757' => 'tpr', 'TPR.G5595' => 'tpr', 'TWI14G0952' => 'twi', 'TWI14G1307' => 'twi', 'TWI38G2143' => 'twi', 'TWI59G0826' => 'twi', 'TWI77G0527' => 'twi', 'TWI81G0150' => 'twi', 'unitig_21.g21018' => 'ugi', 'unitig_26.g9725' => 'ugi', 'unitig_744.g24653' => 'ugi', 'unitig_749.g13778' => 'ugi', 'unitig_899.g15035' => 'ugi', 'vmacro04296' => 'vma', 'vmacro04852' => 'vma', 'vmacro13404' => 'vma', 'vmacro20169' => 'vma', 'vmacro21014' => 'vma', 'VMungo0331G0237' => 'vmu', 'VMungo0331G0706' => 'vmu', 'VMungo0331G1361' => 'vmu', 'VMungo0331G1489' => 'vmu', 'VMungo0540G1037' => 'vmu', 'VMungo0720G2487' => 'vmu', 'VMungo0720G2721' => 'vmu', 'Zm00001eb086860' => 'zma', 'Zm00001eb104760' => 'zma', 'Zm00001eb148220' => 'zma', 'Zm00001eb259030' => 'zma', 'Zm00001eb289590' => 'zma', 'Zm00001eb420150' => 'zma' ) $gf_id = 'HOM05D000968' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000968' ) $data_identifier = 'HOM05D000968' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 19, 'bol' => (int) 9, 'bra' => (int) 12, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 5, 'ccan' => (int) 7, 'cde' => (int) 5, 'cfa' => (int) 8, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 4, 'dca' => (int) 5, 'din' => (int) 5, 'dzi' => (int) 12, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 25, 'fve' => (int) 5, 'gma' => (int) 9, 'ghi' => (int) 18, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 7, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 5, 'sun' => (int) 2, 'lal' => (int) 9, 'lja' => (int) 5, 'lonja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 9, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 2, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 3, 'stu' => (int) 6, 'pvu' => (int) 4, 'ptr' => (int) 8, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 3, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 1, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 5, 'sas' => (int) 5, 'shi' => (int) 6, 'smo' => (int) 6, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 3, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420150' $species_info = array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ) $local_species = 'nnu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000968', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p31690' => 'bna', 'A03p36040' => 'bna', 'A03p53730' => 'bna', 'A04p01410' => 'bna', 'A05p05420' => 'bna', 'A05p39630' => 'bna', 'A05p39640' => 'bna', 'A09p00970' => 'bna', 'A09p53060' => 'bna', 'A10p31890' => 'bna', 'Aa31LG10G15040' => 'aar', 'Aa31LG1G21090' => 'aar', 'Aa31LG1G26900' => 'aar', 'Aa31LG3G1820' => 'aar', 'Aa31LG5G1100' => 'aar', 'Aa31LG6G4740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2265' => 'aag', 'Actinidia07998' => 'ach', 'Actinidia11266' => 'ach', 'Actinidia12682' => 'ach', 'Actinidia26479' => 'ach', 'Actinidia31406' => 'ach', 'Actinidia32437' => 'ach', 'Actinidia38862' => 'ach', 'Ah.05g174230' => 'amhyb', 'Ah.05g179070' => 'amhyb', 'Ah.05g179090' => 'amhyb', 'Ah.12g059950' => 'amhyb', 'AL3G20480' => 'aly', 'AL4G44520' => 'aly', 'AL5G43110' => 'aly', 'AL6G13890' => 'aly', 'AL6G52620' => 'aly', 'AL7G30830' => 'aly', 'Aqoxy1G00899' => 'aox', 'Aqoxy5G04333' => 'aox', 'Aqoxy7G00641' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3IZ0NN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4EF6AW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W9P8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79GA3M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C43NQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFCU6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G95YVJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCHK29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LU1UG8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX91RN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGB4B1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8DA0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9H7JI' => 'arhy', 'AT3G09320' => 'ath', 'AT3G60800' => 'ath', 'AT4G00840' => 'ath', 'AT4G22750' => 'ath', 'AT5G04270' => 'ath', 'ATR0090G003' => 'atr', 'ATR0559G349' => 'atr', 'ATR0680G261' => 'atr', 'ATR0810G048' => 'atr', 'Atru.chr12.831' => 'acertr', 'Atru.chr5.303' => 'acertr', 'Atru.chr5.748' => 'acertr', 'Atru.chr8.1999' => 'acertr', 'Atru.chr9.1436' => 'acertr', 'AUR62004211' => 'cqu', 'AUR62004548' => 'cqu', 'AUR62013637' => 'cqu', 'AUR62022662' => 'cqu', 'AUR62025777' => 'cqu', 'AUR62042386' => 'cqu', 'BcaB01g02310' => 'bca', 'BcaB01g06062' => 'bca', 'BcaB02g08975' => 'bca', 'BcaB02g08980' => 'bca', 'BcaC01g04228' => 'bca', 'BcaC01g06830' => 'bca', 'BcaC02g10186' => 'bca', 'BcaC02g12214' => 'bca', 'BcaC04g24101' => 'bca', 'BcaC05g29520' => 'bca', 'BcaC05g29661' => 'bca', 'BcaC06g32130' => 'bca', 'BcaC06g32131' => 'bca', 'BcaC07g40601' => 'bca', 'BcaC07g42641' => 'bca', 'BcaNung01038' => 'bca', 'BcaNung01676' => 'bca', 'BcaNung02480' => 'bca', 'BcaNung07376' => 'bca', 'BolC3t16146H' => 'bol', 'BolC3t16637H' => 'bol', 'BolC4t22257H' => 'bol', 'BolC4t24728H' => 'bol', 'BolC5t34517H' => 'bol', 'BolC7t45703H' => 'bol', 'BolC8t51166H' => 'bol', 'BolC9t53038H' => 'bol', 'BolC9t60000H' => 'bol', 'BraA01t01345Z' => 'bra', 'BraA01t01346Z' => 'bra', 'BraA01t01348Z' => 'bra', 'BraA03t12347Z' => 'bra', 'BraA03t12775Z' => 'bra', 'BraA03t14439Z' => 'bra', 'BraA04t15860Z' => 'bra', 'BraA05t19511Z' => 'bra', 'BraA05t22746Z' => 'bra', 'BraA09t35767Z' => 'bra', 'BraA09t40732Z' => 'bra', 'BraA10t45233Z' => 'bra', 'C03p38720' => 'bna', 'C03p43680' => 'bna', 'C04p06350' => 'bna', 'C04p31800' => 'bna', 'C05p58680' => 'bna', 'C07p52110' => 'bna', 'C08p35760' => 'bna', 'C09p01050' => 'bna', 'C09p72600' => 'bna', 'CAN.G106.2' => 'can', 'CAN.G1482.1' => 'can', 'CAN.G324.12' => 'can', 'CAN.G388.20' => 'can', 'CAN.G412.7' => 'can', 'CAN.G694.32' => 'can', 'CAN.G92.12' => 'can', 'CANSAT11G2353' => 'cansat', 'CANSAT21G1398' => 'cansat', 'CANSAT56G2456' => 'cansat', 'CANSAT56G3031' => 'cansat', 'CANSAT56G4539' => 'cansat', 'CARHR083680' => 'chi', 'CARHR171190' => 'chi', 'CARHR209010' => 'chi', 'CARHR229680' => 'chi', 'CARHR249490' => 'chi', 'Carub.0003s0844' => 'cru', 'Carub.0005s2755' => 'cru', 'Carub.0006s0322' => 'cru', 'Carub.0006s3586' => 'cru', 'Carub.0007s1855' => 'cru', 'Ca_07808_v3' => 'car', 'Ca_09535_v3' => 'car', 'Ca_10548_v3' => 'car', 'Ca_19913_v3' => 'car', 'Ca_19916_v3' => 'car', 'Ca_19975_v3' => 'car', 'CBR_g22876' => 'cbr', 'CBR_g22879' => 'cbr', 'CBR_g38491' => 'cbr', 'CBR_g54185' => 'cbr', 'CBR_g54190' => 'cbr', 'Cc02_g11020' => 'ccan', 'Cc02_g23920' => 'ccan', 'Cc02_g39860' => 'ccan', 'Cc02_g39870' => 'ccan', 'Cc03_g06760' => 'ccan', 'Cc06_g02450' => 'ccan', 'Cc09_g09450' => 'ccan', 'CDE02G1959' => 'cde', 'CDE04G0600' => 'cde', 'CDE07G1996' => 'cde', 'CDE07G2078' => 'cde', 'CDE11G0611' => 'cde', 'Cfa001683' => 'cfa', 'Cfa001734' => 'cfa', 'Cfa001737' => 'cfa', 'Cfa003751' => 'cfa', 'Cfa012019' => 'cfa', 'Cfa017353' => 'cfa', 'Cfa017732' => 'cfa', 'Cfa022464' => 'cfa', 'Ciclev10012400m.g' => 'ccl', 'Ciclev10021242m.g' => 'ccl', 'Ciclev10021302m.g' => 'ccl', 'Ciclev10021463m.g' => 'ccl', 'Ciclev10032359m.g' => 'ccl', 'CiPaw.01G081000' => 'cil', 'CiPaw.01G262500' => 'cil', 'CiPaw.01G269800' => 'cil', 'CiPaw.02G168400' => 'cil', 'CiPaw.05G119500' => 'cil', 'CiPaw.11G147300' => 'cil', 'ClCG01G003630' => 'cla', 'ClCG05G000510' => 'cla', 'ClCG05G002300' => 'cla', 'ClCG08G007650' => 'cla', 'ClCG10G021250' => 'cla', 'COL.COLO4_06218' => 'col', 'COL.COLO4_12538' => 'col', 'COL.COLO4_14775' => 'col', 'COL.COLO4_23875' => 'col', 'Cpa.g.sc141.16' => 'cpa', 'Cpa.g.sc169.16' => 'cpa', 'Cpa.g.sc244.4' => 'cpa', 'Cpa.g.sc244.5' => 'cpa', 'Cpa.g.sc29.87' => 'cpa', 'Cpa.g.sc53.115' => 'cpa', 'Cre03.g207502' => 'cre', 'Cre06.g277000' => 'cre', 'Cre09.g394050' => 'cre', 'CsaV3_3G007680' => 'csa', 'CsaV3_3G009710' => 'csa', 'CsaV3_3G034790' => 'csa', 'CsaV3_5G003750' => 'csa', 'CsaV3_6G036620' => 'csa', 'CSS0002288' => 'camsi', 'CSS0011250' => 'camsi', 'CSS0021619' => 'camsi', 'CSS0046701' => 'camsi', 'DCAR_006420' => 'dca', 'DCAR_006865' => 'dca', 'DCAR_008558' => 'dca', 'DCAR_028754' => 'dca', 'DCAR_028755' => 'dca', 'Dinv31218' => 'din', 'Dinv32371' => 'din', 'Dinv34250' => 'din', 'Dinv37156' => 'din', 'Dinv43704' => 'din', 'Duzib093G1811' => 'dzi', 'Duzib106G1622' => 'dzi', 'Duzib114G0504' => 'dzi', 'Duzib128G0338' => 'dzi', 'Duzib128G1577' => 'dzi', 'Duzib133G0104' => 'dzi', 'Duzib133G1080' => 'dzi', 'Duzib138G0324' => 'dzi', 'Duzib138G0394' => 'dzi', 'Duzib205G0122' => 'dzi', 'Duzib268G1020' => 'dzi', 'Duzib268G1359' => 'dzi', 'ECA232G3929' => 'eca', 'ECA236G2210' => 'eca', 'ECA236G2287' => 'eca', 'ECA240G4568' => 'eca', 'ECA247G0894' => 'eca', 'EL10Ac1g00200' => 'bvu', 'EL10Ac1g00886' => 'bvu', 'EL10As1g23091' => 'bvu', 'EL10As1g23092' => 'bvu', 'Eucgr.A01284' => 'egr', 'Eucgr.A01285' => 'egr', 'Eucgr.D02456' => 'egr', 'Eucgr.E00018' => 'egr', 'Eucgr.E01439' => 'egr', 'Eucgr.G02859' => 'egr', 'FAN01G0168' => 'fan', 'FAN01G0453' => 'fan', 'FAN01G2761' => 'fan', 'FAN02G1239' => 'fan', 'FAN03G0645' => 'fan', 'FAN03G2707' => 'fan', 'FAN03G2978' => 'fan', 'FAN04G0227' => 'fan', 'FAN06G0091' => 'fan', 'FAN06G1418' => 'fan', 'FAN06G1512' => 'fan', 'FAN06G1986' => 'fan', 'FAN06G2905' => 'fan', 'FAN06G4325' => 'fan', 'FAN08G0033' => 'fan', 'FAN09G0642' => 'fan', 'FAN10G1763' => 'fan', 'FAN10G2026' => 'fan', 'FAN10G2513' => 'fan', 'FAN10G3402' => 'fan', 'FAN10G3564' => 'fan', 'FAN10G3987' => 'fan', 'FAN13G1490' => 'fan', 'FAN14G5857' => 'fan', 'FAN18G1188' => 'fan', 'FvH4_5g00750' => 'fve', 'FvH4_6g13410' => 'fve', 'FvH4_7g11740' => 'fve', 'FvH4_7g17410' => 'fve', 'FvH4_7g18860' => 'fve', 'Glyma.01G099100' => 'gma', 'Glyma.01G142300' => 'gma', 'Glyma.03G025500' => 'gma', 'Glyma.03G069700' => 'gma', 'Glyma.03G260000' => 'gma', 'Glyma.09G269800' => 'gma', 'Glyma.10G208700' => 'gma', 'Glyma.18G220400' => 'gma', 'Glyma.20G182000' => 'gma', 'Gohir.A01G221726' => 'ghi', 'Gohir.A07G134600' => 'ghi', 'Gohir.A07G146000' => 'ghi', 'Gohir.A08G173900' => 'ghi', 'Gohir.A09G194900' => 'ghi', 'Gohir.A10G204100' => 'ghi', 'Gohir.A11G080600' => 'ghi', 'Gohir.A11G327500' => 'ghi', 'Gohir.A12G101800' => 'ghi', 'Gohir.D01G211200' => 'ghi', 'Gohir.D07G139200' => 'ghi', 'Gohir.D07G152100' => 'ghi', 'Gohir.D08G192600' => 'ghi', 'Gohir.D09G189200' => 'ghi', 'Gohir.D10G212000' => 'ghi', 'Gohir.D11G085200' => 'ghi', 'Gohir.D11G346400' => 'ghi', 'Gohir.D12G104800' => 'ghi', 'Gorai.001G151300' => 'gra', 'Gorai.001G174100' => 'gra', 'Gorai.002G257000' => 'gra', 'Gorai.004G202600' => 'gra', 'Gorai.007G090900' => 'gra', 'Gorai.007G376700' => 'gra', 'Gorai.008G114100' => 'gra', 'Gorai.011G237900' => 'gra', 'GSVIVG01005450001' => 'vvi', 'GSVIVG01016232001' => 'vvi', 'GSVIVG01026157001' => 'vvi', 'GSVIVG01027419001' => 'vvi', 'GSVIVG01027631001' => 'vvi', 'GSVIVG01034143001' => 'vvi', 'HanXRQChr03g0093921' => 'han', 'HanXRQChr04g0120001' => 'han', 'HanXRQChr04g0122561' => 'han', 'HanXRQChr09g0246851' => 'han', 'HanXRQChr10g0293311' => 'han', 'HanXRQChr13g0425231' => 'han', 'HanXRQChr16g0532571' => 'han', 'Haze_09050' => 'cav', 'Haze_15715' => 'cav', 'Haze_15716' => 'cav', 'Haze_16803' => 'cav', 'Haze_16850' => 'cav', 'Hma1.2p1_0301F.1_g118655' => 'hma', 'Hma1.2p1_0309F.1_g120590' => 'hma', 'Hma1.2p1_0936F.1_g238900' => 'hma', 'Hma1.2p1_3552F.1_g336740' => 'hma', 'HPP92_003520' => 'vpl', 'HPP92_006628' => 'vpl', 'HPP92_006645' => 'vpl', 'HPP92_014669' => 'vpl', 'HPP92_015077' => 'vpl', 'Hund16742' => 'sun', 'Hund17022' => 'sun', 'Lalb_Chr02g0152131' => 'lal', 'Lalb_Chr05g0225371' => 'lal', 'Lalb_Chr07g0189841' => 'lal', 'Lalb_Chr07g0192961' => 'lal', 'Lalb_Chr12g0208221' => 'lal', 'Lalb_Chr13g0291211' => 'lal', 'Lalb_Chr13g0291781' => 'lal', 'Lalb_Chr18g0044651' => 'lal', 'Lalb_Chr21g0313731' => 'lal', 'Lj1g0022533' => 'lja', 'Lj2A18T50' => 'lonja', 'Lj2A92G93' => 'lonja', 'Lj3A965T73' => 'lonja', 'Lj3g0000673' => 'lja', 'Lj3g0002666' => 'lja', 'Lj4g0016985' => 'lja', 'Lj5g0003625' => 'lja', 'Lj7A529G36' => 'lonja', 'Lj9A569T49' => 'lonja', 'Lj9A604T63' => 'lonja', 'Lsat_1_v5_gn_3_132060' => 'lsa', 'Lsat_1_v5_gn_4_68941' => 'lsa', 'Lsat_1_v5_gn_5_95580' => 'lsa', 'Lsat_1_v5_gn_7_161' => 'lsa', 'Lsat_1_v5_gn_7_7041' => 'lsa', 'Lsat_1_v5_gn_9_33481' => 'lsa', 'Lsat_1_v5_gn_9_68260' => 'lsa', 'Manes.01G073100' => 'mes', 'Manes.01G266300' => 'mes', 'Manes.02G033300' => 'mes', 'Manes.05G017900' => 'mes', 'Manes.05G046100' => 'mes', 'Manes.08G080900' => 'mes', 'Manes.10G049400' => 'mes', 'Mapoly0009s0186' => 'mpo', 'Mapoly0036s0118' => 'mpo', 'Mapoly0101s0046' => 'mpo', 'MBI04_g30218_MAGBIO' => 'mbi', 'MBI04_g35564_MAGBIO' => 'mbi', 'MBI12_g34011_MAGBIO' => 'mbi', 'MBI14_g04655_MAGBIO' => 'mbi', 'MCO07G653' => 'mco', 'MCO10G173' => 'mco', 'MD01G1087100' => 'mdo', 'MD01G1104200' => 'mdo', 'MD02G1205100' => 'mdo', 'MD04G1079200' => 'mdo', 'MD04G1131400' => 'mdo', 'MD07G1121600' => 'mdo', 'MD07G1157300' => 'mdo', 'MD07G1171000' => 'mdo', 'MD12G1144500' => 'mdo', 'Medtr1g094610' => 'mtr', 'Medtr4g021795' => 'mtr', 'Medtr4g023760' => 'mtr', 'Medtr7g118050' => 'mtr', 'MELO3C005582.2' => 'cme', 'MELO3C005989.2' => 'cme', 'MELO3C006192.2' => 'cme', 'MELO3C009248.2' => 'cme', 'MELO3C019817.2' => 'cme', 'Migut.B01625' => 'egut', 'Migut.B01915' => 'egut', 'Migut.F01721' => 'egut', 'Migut.J00314' => 'egut', 'MSTRG.20742' => 'ama', 'MSTRG.8134' => 'ama', 'Nitab4.5_0000096g0010' => 'nta', 'Nitab4.5_0000202g0030' => 'nta', 'Nitab4.5_0000216g0370' => 'nta', 'Nitab4.5_0000457g0230' => 'nta', 'Nitab4.5_0001702g0170' => 'nta', 'Nitab4.5_0003607g0010' => 'nta', 'Nitab4.5_0004917g0020' => 'nta', 'Nitab4.5_0007059g0010' => 'nta', 'Nitab4.5_0007184g0010' => 'nta', 'Nitab4.5_0007346g0020' => 'nta', 'Nn1g00410' => 'nnu', 'Nn1g01252' => 'nnu', 'Nn2g11168' => 'nnu', 'Nn2g13403' => 'nnu', 'Nn2g13760' => 'nnu', 'Nn4g26380' => 'nnu', 'Oeu000806.2' => 'oeu', 'Oeu005788.1' => 'oeu', 'Oeu006900.3' => 'oeu', 'Oeu007797.1' => 'oeu', 'Oeu011932.1' => 'oeu', 'Oeu022739.1' => 'oeu', 'Oeu037918.1' => 'oeu', 'Oeu055490.2' => 'oeu', 'Os01g0844400' => 'osa', 'Os02g0819100' => 'osa', 'Os03g0804300' => 'osa', 'Os05g0458000' => 'osa', 'Os07g0467800' => 'osa', 'Os12g0602200' => 'osa', 'Peaxi162Scf00013g03444' => 'pax', 'Peaxi162Scf00094g01120' => 'pax', 'Peaxi162Scf00191g01211' => 'pax', 'Peaxi162Scf00238g01110' => 'pax', 'Peaxi162Scf00330g00719' => 'pax', 'Peaxi162Scf00627g00018' => 'pax', 'PGR031G2686' => 'pgr', 'PGR042G0809' => 'pgr', 'PGR142G0193' => 'pgr', 'PGSC0003DMG400011066' => 'stu', 'PGSC0003DMG400012041' => 'stu', 'PGSC0003DMG400013678' => 'stu', 'PGSC0003DMG400023477' => 'stu', 'PGSC0003DMG400025956' => 'stu', 'PGSC0003DMG401019151' => 'stu', 'Phvul.006G116400' => 'pvu', 'Phvul.007G097300' => 'pvu', 'Phvul.010G015000' => 'pvu', 'Phvul.010G083900' => 'pvu', 'Potri.001G117100' => 'ptr', 'Potri.002G147300' => 'ptr', 'Potri.003G115600' => 'ptr', 'Potri.006G087400' => 'ptr', 'Potri.010G226100' => 'ptr', 'Potri.014G069200' => 'ptr', 'Potri.014G104000' => 'ptr', 'Potri.016G100200' => 'ptr', 'Pp3c10_20450' => 'ppa', 'Pp3c1_42400' => 'ppa', 'Pp3c3_24390' => 'ppa', 'Pp3c3_2860' => 'ppa', 'PRCOL_00003193' => 'pco', 'Prupe.2G144500' => 'ppe', 'Prupe.2G195700' => 'ppe', 'Prupe.2G209800' => 'ppe', 'Prupe.5G080000' => 'ppe', 'Prupe.6G257900' => 'ppe', 'Psat3g001160' => 'psa', 'Psat6g181880' => 'psa', 'Psat7g233720' => 'psa', 'PSO063G7587' => 'pso', 'PSO339G2145' => 'pso', 'PSO339G3369' => 'pso', 'PSO478G2747' => 'pso', 'PSO513G0140' => 'pso', 'PSO782G1614' => 'pso', 'PSO782G4889' => 'pso', 'PSO782G5485' => 'pso', 'PSO801G0241' => 'pso', 'QL07p048854' => 'qlo', 'QL08p046745' => 'qlo', 'QL08p052606' => 'qlo', 'QL08p053414' => 'qlo', 'QL08p054868' => 'qlo', 'RcHm_v2.0_Chr1g0350251' => 'rch', 'RcHm_v2.0_Chr1g0360851' => 'rch', 'RcHm_v2.0_Chr1g0362791' => 'rch', 'RcHm_v2.0_Chr3g0466281' => 'rch', 'RcHm_v2.0_Chr7g0201481' => 'rch', 'Rhsim01G0148600' => 'rsi', 'Rhsim05G0194400' => 'rsi', 'Rhsim07G0000700' => 'rsi', 'Rhsim07G0000800' => 'rsi', 'Rhsim07G0027900' => 'rsi', 'Rhsim09G0149500' => 'rsi', 'RhsimUnG0186900' => 'rsi', 'Sabra01G0089900' => 'sbr', 'Sabra02G0114700' => 'sbr', 'Sabra02G0116300' => 'sbr', 'Sabra03G0080100' => 'sbr', 'Sabra08G0024300' => 'sbr', 'Sabra10G0174300' => 'sbr', 'Sabra14G0048900' => 'sbr', 'Sabra14G0076500' => 'sbr', 'SalBow5G2513' => 'sbo', 'Sc01g0002300' => 'sci', 'Sc01g0004450' => 'sci', 'Sc06g0001680' => 'sci', 'Sc23g0003580' => 'sci', 'Sed0000913' => 'sed', 'Sed0001655' => 'sed', 'Sed0007745' => 'sed', 'Sed0010951' => 'sed', 'Sed0017599' => 'sed', 'Sed0021405' => 'sed', 'Sed0022810' => 'sed', 'SEGI_07099' => 'sgi', 'SEGI_11931' => 'sgi', 'SEGI_13187' => 'sgi', 'SEGI_29958' => 'sgi', 'SEGI_36351' => 'sgi', 'SGA_v2.0_scaffold126G33770' => 'sas', 'SGA_v2.0_scaffold153G37003' => 'sas', 'SGA_v2.0_scaffold2G01359' => 'sas', 'SGA_v2.0_scaffold5G03064' => 'sas', 'SGA_v2.0_scaffold95G28903' => 'sas', 'SHI12701' => 'shi', 'SHI26410' => 'shi', 'SHI38997' => 'shi', 'SHI53759' => 'shi', 'SHI53886' => 'shi', 'SHI54714' => 'shi', 'SMO011G0041' => 'smo', 'SMO146G0251' => 'smo', 'SMO160G0004' => 'smo', 'SMO174G0057' => 'smo', 'SMO244G0089' => 'smo', 'SMO296G0011' => 'smo', 'Solyc01g091280.3' => 'sly', 'Solyc05g047610.3' => 'sly', 'Solyc05g047640.3' => 'sly', 'Solyc05g055630.3' => 'sly', 'Solyc10g018160.2' => 'sly', 'Solyc10g084820.2' => 'sly', 'Solyc10g086565.2' => 'sly', 'Sopen01g037030' => 'spe', 'Sopen05g027920' => 'spe', 'Sopen05g034070' => 'spe', 'Sopen10g007260' => 'spe', 'Sopen10g034260' => 'spe', 'Sopen10g035950' => 'spe', 'Sp3g07710' => 'spa', 'Sp4g27420' => 'spa', 'Sp5g02450' => 'spa', 'Sp6g01280' => 'spa', 'Sp6g38480' => 'spa', 'Sp7g20780' => 'spa', 'TAR374G1413' => 'tar', 'TAR623G1777' => 'tar', 'TAR629G2370' => 'tar', 'TAR633G1759' => 'tar', 'TAR636G3387' => 'tar', 'THA.LOC104802447' => 'tha', 'THA.LOC104813916' => 'tha', 'THA.LOC104816423' => 'tha', 'THA.LOC104817246' => 'tha', 'THA.LOC104825895' => 'tha', 'Thecc.01G335200' => 'tca', 'Thecc.01G377400' => 'tca', 'Thecc.03G262200' => 'tca', 'Thecc.05G036800' => 'tca', 'Thecc.10G080500' => 'tca', 'Thecc.10G080800' => 'tca', 'Thhalv10001560m.g' => 'esa', 'Thhalv10006120m.g' => 'esa', 'Thhalv10014375m.g' => 'esa', 'Thhalv10021264m.g' => 'esa', 'Thhalv10028856m.g' => 'esa', 'TPR.G1914' => 'tpr', 'TPR.G4757' => 'tpr', 'TPR.G5595' => 'tpr', 'TWI14G0952' => 'twi', 'TWI14G1307' => 'twi', 'TWI38G2143' => 'twi', 'TWI59G0826' => 'twi', 'TWI77G0527' => 'twi', 'TWI81G0150' => 'twi', 'unitig_21.g21018' => 'ugi', 'unitig_26.g9725' => 'ugi', 'unitig_744.g24653' => 'ugi', 'unitig_749.g13778' => 'ugi', 'unitig_899.g15035' => 'ugi', 'vmacro04296' => 'vma', 'vmacro04852' => 'vma', 'vmacro13404' => 'vma', 'vmacro20169' => 'vma', 'vmacro21014' => 'vma', 'VMungo0331G0237' => 'vmu', 'VMungo0331G0706' => 'vmu', 'VMungo0331G1361' => 'vmu', 'VMungo0331G1489' => 'vmu', 'VMungo0540G1037' => 'vmu', 'VMungo0720G2487' => 'vmu', 'VMungo0720G2721' => 'vmu', 'Zm00001eb086860' => 'zma', 'Zm00001eb104760' => 'zma', 'Zm00001eb148220' => 'zma', 'Zm00001eb259030' => 'zma', 'Zm00001eb289590' => 'zma', 'Zm00001eb420150' => 'zma' ), 'gf_id' => 'HOM05D000968', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000968' ), 'data_identifier' => 'HOM05D000968', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000968', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p31690' => 'bna', 'A03p36040' => 'bna', 'A03p53730' => 'bna', 'A04p01410' => 'bna', 'A05p05420' => 'bna', 'A05p39630' => 'bna', 'A05p39640' => 'bna', 'A09p00970' => 'bna', 'A09p53060' => 'bna', 'A10p31890' => 'bna', 'Aa31LG10G15040' => 'aar', 'Aa31LG1G21090' => 'aar', 'Aa31LG1G26900' => 'aar', 'Aa31LG3G1820' => 'aar', 'Aa31LG5G1100' => 'aar', 'Aa31LG6G4740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2265' => 'aag', 'Actinidia07998' => 'ach', 'Actinidia11266' => 'ach', 'Actinidia12682' => 'ach', 'Actinidia26479' => 'ach', 'Actinidia31406' => 'ach', 'Actinidia32437' => 'ach', 'Actinidia38862' => 'ach', 'Ah.05g174230' => 'amhyb', 'Ah.05g179070' => 'amhyb', 'Ah.05g179090' => 'amhyb', 'Ah.12g059950' => 'amhyb', 'AL3G20480' => 'aly', 'AL4G44520' => 'aly', 'AL5G43110' => 'aly', 'AL6G13890' => 'aly', 'AL6G52620' => 'aly', 'AL7G30830' => 'aly', 'Aqoxy1G00899' => 'aox', 'Aqoxy5G04333' => 'aox', 'Aqoxy7G00641' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3IZ0NN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4EF6AW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W9P8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79GA3M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C43NQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFCU6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G95YVJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCHK29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LU1UG8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX91RN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGB4B1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8DA0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9H7JI' => 'arhy', 'AT3G09320' => 'ath', 'AT3G60800' => 'ath', 'AT4G00840' => 'ath', 'AT4G22750' => 'ath', 'AT5G04270' => 'ath', 'ATR0090G003' => 'atr', 'ATR0559G349' => 'atr', 'ATR0680G261' => 'atr', 'ATR0810G048' => 'atr', 'Atru.chr12.831' => 'acertr', 'Atru.chr5.303' => 'acertr', 'Atru.chr5.748' => 'acertr', 'Atru.chr8.1999' => 'acertr', 'Atru.chr9.1436' => 'acertr', 'AUR62004211' => 'cqu', 'AUR62004548' => 'cqu', 'AUR62013637' => 'cqu', 'AUR62022662' => 'cqu', 'AUR62025777' => 'cqu', 'AUR62042386' => 'cqu', 'BcaB01g02310' => 'bca', 'BcaB01g06062' => 'bca', 'BcaB02g08975' => 'bca', 'BcaB02g08980' => 'bca', 'BcaC01g04228' => 'bca', 'BcaC01g06830' => 'bca', 'BcaC02g10186' => 'bca', 'BcaC02g12214' => 'bca', 'BcaC04g24101' => 'bca', 'BcaC05g29520' => 'bca', 'BcaC05g29661' => 'bca', 'BcaC06g32130' => 'bca', 'BcaC06g32131' => 'bca', 'BcaC07g40601' => 'bca', 'BcaC07g42641' => 'bca', 'BcaNung01038' => 'bca', 'BcaNung01676' => 'bca', 'BcaNung02480' => 'bca', 'BcaNung07376' => 'bca', 'BolC3t16146H' => 'bol', 'BolC3t16637H' => 'bol', 'BolC4t22257H' => 'bol', 'BolC4t24728H' => 'bol', 'BolC5t34517H' => 'bol', 'BolC7t45703H' => 'bol', 'BolC8t51166H' => 'bol', 'BolC9t53038H' => 'bol', 'BolC9t60000H' => 'bol', 'BraA01t01345Z' => 'bra', 'BraA01t01346Z' => 'bra', 'BraA01t01348Z' => 'bra', 'BraA03t12347Z' => 'bra', 'BraA03t12775Z' => 'bra', 'BraA03t14439Z' => 'bra', 'BraA04t15860Z' => 'bra', 'BraA05t19511Z' => 'bra', 'BraA05t22746Z' => 'bra', 'BraA09t35767Z' => 'bra', 'BraA09t40732Z' => 'bra', 'BraA10t45233Z' => 'bra', 'C03p38720' => 'bna', 'C03p43680' => 'bna', 'C04p06350' => 'bna', 'C04p31800' => 'bna', 'C05p58680' => 'bna', 'C07p52110' => 'bna', 'C08p35760' => 'bna', 'C09p01050' => 'bna', 'C09p72600' => 'bna', 'CAN.G106.2' => 'can', 'CAN.G1482.1' => 'can', 'CAN.G324.12' => 'can', 'CAN.G388.20' => 'can', 'CAN.G412.7' => 'can', 'CAN.G694.32' => 'can', 'CAN.G92.12' => 'can', 'CANSAT11G2353' => 'cansat', 'CANSAT21G1398' => 'cansat', 'CANSAT56G2456' => 'cansat', 'CANSAT56G3031' => 'cansat', 'CANSAT56G4539' => 'cansat', 'CARHR083680' => 'chi', 'CARHR171190' => 'chi', 'CARHR209010' => 'chi', 'CARHR229680' => 'chi', 'CARHR249490' => 'chi', 'Carub.0003s0844' => 'cru', 'Carub.0005s2755' => 'cru', 'Carub.0006s0322' => 'cru', 'Carub.0006s3586' => 'cru', 'Carub.0007s1855' => 'cru', 'Ca_07808_v3' => 'car', 'Ca_09535_v3' => 'car', 'Ca_10548_v3' => 'car', 'Ca_19913_v3' => 'car', 'Ca_19916_v3' => 'car', 'Ca_19975_v3' => 'car', 'CBR_g22876' => 'cbr', 'CBR_g22879' => 'cbr', 'CBR_g38491' => 'cbr', 'CBR_g54185' => 'cbr', 'CBR_g54190' => 'cbr', 'Cc02_g11020' => 'ccan', 'Cc02_g23920' => 'ccan', 'Cc02_g39860' => 'ccan', 'Cc02_g39870' => 'ccan', 'Cc03_g06760' => 'ccan', 'Cc06_g02450' => 'ccan', 'Cc09_g09450' => 'ccan', 'CDE02G1959' => 'cde', 'CDE04G0600' => 'cde', 'CDE07G1996' => 'cde', 'CDE07G2078' => 'cde', 'CDE11G0611' => 'cde', 'Cfa001683' => 'cfa', 'Cfa001734' => 'cfa', 'Cfa001737' => 'cfa', 'Cfa003751' => 'cfa', 'Cfa012019' => 'cfa', 'Cfa017353' => 'cfa', 'Cfa017732' => 'cfa', 'Cfa022464' => 'cfa', 'Ciclev10012400m.g' => 'ccl', 'Ciclev10021242m.g' => 'ccl', 'Ciclev10021302m.g' => 'ccl', 'Ciclev10021463m.g' => 'ccl', 'Ciclev10032359m.g' => 'ccl', 'CiPaw.01G081000' => 'cil', 'CiPaw.01G262500' => 'cil', 'CiPaw.01G269800' => 'cil', 'CiPaw.02G168400' => 'cil', 'CiPaw.05G119500' => 'cil', 'CiPaw.11G147300' => 'cil', 'ClCG01G003630' => 'cla', 'ClCG05G000510' => 'cla', 'ClCG05G002300' => 'cla', 'ClCG08G007650' => 'cla', 'ClCG10G021250' => 'cla', 'COL.COLO4_06218' => 'col', 'COL.COLO4_12538' => 'col', 'COL.COLO4_14775' => 'col', 'COL.COLO4_23875' => 'col', 'Cpa.g.sc141.16' => 'cpa', 'Cpa.g.sc169.16' => 'cpa', 'Cpa.g.sc244.4' => 'cpa', 'Cpa.g.sc244.5' => 'cpa', 'Cpa.g.sc29.87' => 'cpa', 'Cpa.g.sc53.115' => 'cpa', 'Cre03.g207502' => 'cre', 'Cre06.g277000' => 'cre', 'Cre09.g394050' => 'cre', 'CsaV3_3G007680' => 'csa', 'CsaV3_3G009710' => 'csa', 'CsaV3_3G034790' => 'csa', 'CsaV3_5G003750' => 'csa', 'CsaV3_6G036620' => 'csa', 'CSS0002288' => 'camsi', 'CSS0011250' => 'camsi', 'CSS0021619' => 'camsi', 'CSS0046701' => 'camsi', 'DCAR_006420' => 'dca', 'DCAR_006865' => 'dca', 'DCAR_008558' => 'dca', 'DCAR_028754' => 'dca', 'DCAR_028755' => 'dca', 'Dinv31218' => 'din', 'Dinv32371' => 'din', 'Dinv34250' => 'din', 'Dinv37156' => 'din', 'Dinv43704' => 'din', 'Duzib093G1811' => 'dzi', 'Duzib106G1622' => 'dzi', 'Duzib114G0504' => 'dzi', 'Duzib128G0338' => 'dzi', 'Duzib128G1577' => 'dzi', 'Duzib133G0104' => 'dzi', 'Duzib133G1080' => 'dzi', 'Duzib138G0324' => 'dzi', 'Duzib138G0394' => 'dzi', 'Duzib205G0122' => 'dzi', 'Duzib268G1020' => 'dzi', 'Duzib268G1359' => 'dzi', 'ECA232G3929' => 'eca', 'ECA236G2210' => 'eca', 'ECA236G2287' => 'eca', 'ECA240G4568' => 'eca', 'ECA247G0894' => 'eca', 'EL10Ac1g00200' => 'bvu', 'EL10Ac1g00886' => 'bvu', 'EL10As1g23091' => 'bvu', 'EL10As1g23092' => 'bvu', 'Eucgr.A01284' => 'egr', 'Eucgr.A01285' => 'egr', 'Eucgr.D02456' => 'egr', 'Eucgr.E00018' => 'egr', 'Eucgr.E01439' => 'egr', 'Eucgr.G02859' => 'egr', 'FAN01G0168' => 'fan', 'FAN01G0453' => 'fan', 'FAN01G2761' => 'fan', 'FAN02G1239' => 'fan', 'FAN03G0645' => 'fan', 'FAN03G2707' => 'fan', 'FAN03G2978' => 'fan', 'FAN04G0227' => 'fan', 'FAN06G0091' => 'fan', 'FAN06G1418' => 'fan', 'FAN06G1512' => 'fan', 'FAN06G1986' => 'fan', 'FAN06G2905' => 'fan', 'FAN06G4325' => 'fan', 'FAN08G0033' => 'fan', 'FAN09G0642' => 'fan', 'FAN10G1763' => 'fan', 'FAN10G2026' => 'fan', 'FAN10G2513' => 'fan', 'FAN10G3402' => 'fan', 'FAN10G3564' => 'fan', 'FAN10G3987' => 'fan', 'FAN13G1490' => 'fan', 'FAN14G5857' => 'fan', 'FAN18G1188' => 'fan', 'FvH4_5g00750' => 'fve', 'FvH4_6g13410' => 'fve', 'FvH4_7g11740' => 'fve', 'FvH4_7g17410' => 'fve', 'FvH4_7g18860' => 'fve', 'Glyma.01G099100' => 'gma', 'Glyma.01G142300' => 'gma', 'Glyma.03G025500' => 'gma', 'Glyma.03G069700' => 'gma', 'Glyma.03G260000' => 'gma', 'Glyma.09G269800' => 'gma', 'Glyma.10G208700' => 'gma', 'Glyma.18G220400' => 'gma', 'Glyma.20G182000' => 'gma', 'Gohir.A01G221726' => 'ghi', 'Gohir.A07G134600' => 'ghi', 'Gohir.A07G146000' => 'ghi', 'Gohir.A08G173900' => 'ghi', 'Gohir.A09G194900' => 'ghi', 'Gohir.A10G204100' => 'ghi', 'Gohir.A11G080600' => 'ghi', 'Gohir.A11G327500' => 'ghi', 'Gohir.A12G101800' => 'ghi', 'Gohir.D01G211200' => 'ghi', 'Gohir.D07G139200' => 'ghi', 'Gohir.D07G152100' => 'ghi', 'Gohir.D08G192600' => 'ghi', 'Gohir.D09G189200' => 'ghi', 'Gohir.D10G212000' => 'ghi', 'Gohir.D11G085200' => 'ghi', 'Gohir.D11G346400' => 'ghi', 'Gohir.D12G104800' => 'ghi', 'Gorai.001G151300' => 'gra', 'Gorai.001G174100' => 'gra', 'Gorai.002G257000' => 'gra', 'Gorai.004G202600' => 'gra', 'Gorai.007G090900' => 'gra', 'Gorai.007G376700' => 'gra', 'Gorai.008G114100' => 'gra', 'Gorai.011G237900' => 'gra', 'GSVIVG01005450001' => 'vvi', 'GSVIVG01016232001' => 'vvi', 'GSVIVG01026157001' => 'vvi', 'GSVIVG01027419001' => 'vvi', 'GSVIVG01027631001' => 'vvi', 'GSVIVG01034143001' => 'vvi', 'HanXRQChr03g0093921' => 'han', 'HanXRQChr04g0120001' => 'han', 'HanXRQChr04g0122561' => 'han', 'HanXRQChr09g0246851' => 'han', 'HanXRQChr10g0293311' => 'han', 'HanXRQChr13g0425231' => 'han', 'HanXRQChr16g0532571' => 'han', 'Haze_09050' => 'cav', 'Haze_15715' => 'cav', 'Haze_15716' => 'cav', 'Haze_16803' => 'cav', 'Haze_16850' => 'cav', 'Hma1.2p1_0301F.1_g118655' => 'hma', 'Hma1.2p1_0309F.1_g120590' => 'hma', 'Hma1.2p1_0936F.1_g238900' => 'hma', 'Hma1.2p1_3552F.1_g336740' => 'hma', 'HPP92_003520' => 'vpl', 'HPP92_006628' => 'vpl', 'HPP92_006645' => 'vpl', 'HPP92_014669' => 'vpl', 'HPP92_015077' => 'vpl', 'Hund16742' => 'sun', 'Hund17022' => 'sun', 'Lalb_Chr02g0152131' => 'lal', 'Lalb_Chr05g0225371' => 'lal', 'Lalb_Chr07g0189841' => 'lal', 'Lalb_Chr07g0192961' => 'lal', 'Lalb_Chr12g0208221' => 'lal', 'Lalb_Chr13g0291211' => 'lal', 'Lalb_Chr13g0291781' => 'lal', 'Lalb_Chr18g0044651' => 'lal', 'Lalb_Chr21g0313731' => 'lal', 'Lj1g0022533' => 'lja', 'Lj2A18T50' => 'lonja', 'Lj2A92G93' => 'lonja', 'Lj3A965T73' => 'lonja', 'Lj3g0000673' => 'lja', 'Lj3g0002666' => 'lja', 'Lj4g0016985' => 'lja', 'Lj5g0003625' => 'lja', 'Lj7A529G36' => 'lonja', 'Lj9A569T49' => 'lonja', 'Lj9A604T63' => 'lonja', 'Lsat_1_v5_gn_3_132060' => 'lsa', 'Lsat_1_v5_gn_4_68941' => 'lsa', 'Lsat_1_v5_gn_5_95580' => 'lsa', 'Lsat_1_v5_gn_7_161' => 'lsa', 'Lsat_1_v5_gn_7_7041' => 'lsa', 'Lsat_1_v5_gn_9_33481' => 'lsa', 'Lsat_1_v5_gn_9_68260' => 'lsa', 'Manes.01G073100' => 'mes', 'Manes.01G266300' => 'mes', 'Manes.02G033300' => 'mes', 'Manes.05G017900' => 'mes', 'Manes.05G046100' => 'mes', 'Manes.08G080900' => 'mes', 'Manes.10G049400' => 'mes', 'Mapoly0009s0186' => 'mpo', 'Mapoly0036s0118' => 'mpo', 'Mapoly0101s0046' => 'mpo', 'MBI04_g30218_MAGBIO' => 'mbi', 'MBI04_g35564_MAGBIO' => 'mbi', 'MBI12_g34011_MAGBIO' => 'mbi', 'MBI14_g04655_MAGBIO' => 'mbi', 'MCO07G653' => 'mco', 'MCO10G173' => 'mco', 'MD01G1087100' => 'mdo', 'MD01G1104200' => 'mdo', 'MD02G1205100' => 'mdo', 'MD04G1079200' => 'mdo', 'MD04G1131400' => 'mdo', 'MD07G1121600' => 'mdo', 'MD07G1157300' => 'mdo', 'MD07G1171000' => 'mdo', 'MD12G1144500' => 'mdo', 'Medtr1g094610' => 'mtr', 'Medtr4g021795' => 'mtr', 'Medtr4g023760' => 'mtr', 'Medtr7g118050' => 'mtr', 'MELO3C005582.2' => 'cme', 'MELO3C005989.2' => 'cme', 'MELO3C006192.2' => 'cme', 'MELO3C009248.2' => 'cme', 'MELO3C019817.2' => 'cme', 'Migut.B01625' => 'egut', 'Migut.B01915' => 'egut', 'Migut.F01721' => 'egut', 'Migut.J00314' => 'egut', 'MSTRG.20742' => 'ama', 'MSTRG.8134' => 'ama', 'Nitab4.5_0000096g0010' => 'nta', 'Nitab4.5_0000202g0030' => 'nta', 'Nitab4.5_0000216g0370' => 'nta', 'Nitab4.5_0000457g0230' => 'nta', 'Nitab4.5_0001702g0170' => 'nta', 'Nitab4.5_0003607g0010' => 'nta', 'Nitab4.5_0004917g0020' => 'nta', 'Nitab4.5_0007059g0010' => 'nta', 'Nitab4.5_0007184g0010' => 'nta', 'Nitab4.5_0007346g0020' => 'nta', 'Nn1g00410' => 'nnu', 'Nn1g01252' => 'nnu', 'Nn2g11168' => 'nnu', 'Nn2g13403' => 'nnu', 'Nn2g13760' => 'nnu', 'Nn4g26380' => 'nnu', 'Oeu000806.2' => 'oeu', 'Oeu005788.1' => 'oeu', 'Oeu006900.3' => 'oeu', 'Oeu007797.1' => 'oeu', 'Oeu011932.1' => 'oeu', 'Oeu022739.1' => 'oeu', 'Oeu037918.1' => 'oeu', 'Oeu055490.2' => 'oeu', 'Os01g0844400' => 'osa', 'Os02g0819100' => 'osa', 'Os03g0804300' => 'osa', 'Os05g0458000' => 'osa', 'Os07g0467800' => 'osa', 'Os12g0602200' => 'osa', 'Peaxi162Scf00013g03444' => 'pax', 'Peaxi162Scf00094g01120' => 'pax', 'Peaxi162Scf00191g01211' => 'pax', 'Peaxi162Scf00238g01110' => 'pax', 'Peaxi162Scf00330g00719' => 'pax', 'Peaxi162Scf00627g00018' => 'pax', 'PGR031G2686' => 'pgr', 'PGR042G0809' => 'pgr', 'PGR142G0193' => 'pgr', 'PGSC0003DMG400011066' => 'stu', 'PGSC0003DMG400012041' => 'stu', 'PGSC0003DMG400013678' => 'stu', 'PGSC0003DMG400023477' => 'stu', 'PGSC0003DMG400025956' => 'stu', 'PGSC0003DMG401019151' => 'stu', 'Phvul.006G116400' => 'pvu', 'Phvul.007G097300' => 'pvu', 'Phvul.010G015000' => 'pvu', 'Phvul.010G083900' => 'pvu', 'Potri.001G117100' => 'ptr', 'Potri.002G147300' => 'ptr', 'Potri.003G115600' => 'ptr', 'Potri.006G087400' => 'ptr', 'Potri.010G226100' => 'ptr', 'Potri.014G069200' => 'ptr', 'Potri.014G104000' => 'ptr', 'Potri.016G100200' => 'ptr', 'Pp3c10_20450' => 'ppa', 'Pp3c1_42400' => 'ppa', 'Pp3c3_24390' => 'ppa', 'Pp3c3_2860' => 'ppa', 'PRCOL_00003193' => 'pco', 'Prupe.2G144500' => 'ppe', 'Prupe.2G195700' => 'ppe', 'Prupe.2G209800' => 'ppe', 'Prupe.5G080000' => 'ppe', 'Prupe.6G257900' => 'ppe', 'Psat3g001160' => 'psa', 'Psat6g181880' => 'psa', 'Psat7g233720' => 'psa', 'PSO063G7587' => 'pso', 'PSO339G2145' => 'pso', 'PSO339G3369' => 'pso', 'PSO478G2747' => 'pso', 'PSO513G0140' => 'pso', 'PSO782G1614' => 'pso', 'PSO782G4889' => 'pso', 'PSO782G5485' => 'pso', 'PSO801G0241' => 'pso', 'QL07p048854' => 'qlo', 'QL08p046745' => 'qlo', 'QL08p052606' => 'qlo', 'QL08p053414' => 'qlo', 'QL08p054868' => 'qlo', 'RcHm_v2.0_Chr1g0350251' => 'rch', 'RcHm_v2.0_Chr1g0360851' => 'rch', 'RcHm_v2.0_Chr1g0362791' => 'rch', 'RcHm_v2.0_Chr3g0466281' => 'rch', 'RcHm_v2.0_Chr7g0201481' => 'rch', 'Rhsim01G0148600' => 'rsi', 'Rhsim05G0194400' => 'rsi', 'Rhsim07G0000700' => 'rsi', 'Rhsim07G0000800' => 'rsi', 'Rhsim07G0027900' => 'rsi', 'Rhsim09G0149500' => 'rsi', 'RhsimUnG0186900' => 'rsi', 'Sabra01G0089900' => 'sbr', 'Sabra02G0114700' => 'sbr', 'Sabra02G0116300' => 'sbr', 'Sabra03G0080100' => 'sbr', 'Sabra08G0024300' => 'sbr', 'Sabra10G0174300' => 'sbr', 'Sabra14G0048900' => 'sbr', 'Sabra14G0076500' => 'sbr', 'SalBow5G2513' => 'sbo', 'Sc01g0002300' => 'sci', 'Sc01g0004450' => 'sci', 'Sc06g0001680' => 'sci', 'Sc23g0003580' => 'sci', 'Sed0000913' => 'sed', 'Sed0001655' => 'sed', 'Sed0007745' => 'sed', 'Sed0010951' => 'sed', 'Sed0017599' => 'sed', 'Sed0021405' => 'sed', 'Sed0022810' => 'sed', 'SEGI_07099' => 'sgi', 'SEGI_11931' => 'sgi', 'SEGI_13187' => 'sgi', 'SEGI_29958' => 'sgi', 'SEGI_36351' => 'sgi', 'SGA_v2.0_scaffold126G33770' => 'sas', 'SGA_v2.0_scaffold153G37003' => 'sas', 'SGA_v2.0_scaffold2G01359' => 'sas', 'SGA_v2.0_scaffold5G03064' => 'sas', 'SGA_v2.0_scaffold95G28903' => 'sas', 'SHI12701' => 'shi', 'SHI26410' => 'shi', 'SHI38997' => 'shi', 'SHI53759' => 'shi', 'SHI53886' => 'shi', 'SHI54714' => 'shi', 'SMO011G0041' => 'smo', 'SMO146G0251' => 'smo', 'SMO160G0004' => 'smo', 'SMO174G0057' => 'smo', 'SMO244G0089' => 'smo', 'SMO296G0011' => 'smo', 'Solyc01g091280.3' => 'sly', 'Solyc05g047610.3' => 'sly', 'Solyc05g047640.3' => 'sly', 'Solyc05g055630.3' => 'sly', 'Solyc10g018160.2' => 'sly', 'Solyc10g084820.2' => 'sly', 'Solyc10g086565.2' => 'sly', 'Sopen01g037030' => 'spe', 'Sopen05g027920' => 'spe', 'Sopen05g034070' => 'spe', 'Sopen10g007260' => 'spe', 'Sopen10g034260' => 'spe', 'Sopen10g035950' => 'spe', 'Sp3g07710' => 'spa', 'Sp4g27420' => 'spa', 'Sp5g02450' => 'spa', 'Sp6g01280' => 'spa', 'Sp6g38480' => 'spa', 'Sp7g20780' => 'spa', 'TAR374G1413' => 'tar', 'TAR623G1777' => 'tar', 'TAR629G2370' => 'tar', 'TAR633G1759' => 'tar', 'TAR636G3387' => 'tar', 'THA.LOC104802447' => 'tha', 'THA.LOC104813916' => 'tha', 'THA.LOC104816423' => 'tha', 'THA.LOC104817246' => 'tha', 'THA.LOC104825895' => 'tha', 'Thecc.01G335200' => 'tca', 'Thecc.01G377400' => 'tca', 'Thecc.03G262200' => 'tca', 'Thecc.05G036800' => 'tca', 'Thecc.10G080500' => 'tca', 'Thecc.10G080800' => 'tca', 'Thhalv10001560m.g' => 'esa', 'Thhalv10006120m.g' => 'esa', 'Thhalv10014375m.g' => 'esa', 'Thhalv10021264m.g' => 'esa', 'Thhalv10028856m.g' => 'esa', 'TPR.G1914' => 'tpr', 'TPR.G4757' => 'tpr', 'TPR.G5595' => 'tpr', 'TWI14G0952' => 'twi', 'TWI14G1307' => 'twi', 'TWI38G2143' => 'twi', 'TWI59G0826' => 'twi', 'TWI77G0527' => 'twi', 'TWI81G0150' => 'twi', 'unitig_21.g21018' => 'ugi', 'unitig_26.g9725' => 'ugi', 'unitig_744.g24653' => 'ugi', 'unitig_749.g13778' => 'ugi', 'unitig_899.g15035' => 'ugi', 'vmacro04296' => 'vma', 'vmacro04852' => 'vma', 'vmacro13404' => 'vma', 'vmacro20169' => 'vma', 'vmacro21014' => 'vma', 'VMungo0331G0237' => 'vmu', 'VMungo0331G0706' => 'vmu', 'VMungo0331G1361' => 'vmu', 'VMungo0331G1489' => 'vmu', 'VMungo0540G1037' => 'vmu', 'VMungo0720G2487' => 'vmu', 'VMungo0720G2721' => 'vmu', 'Zm00001eb086860' => 'zma', 'Zm00001eb104760' => 'zma', 'Zm00001eb148220' => 'zma', 'Zm00001eb259030' => 'zma', 'Zm00001eb289590' => 'zma', 'Zm00001eb420150' => 'zma' ) $gf_id = 'HOM05D000968' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000968' ) $data_identifier = 'HOM05D000968' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 19, 'bol' => (int) 9, 'bra' => (int) 12, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 5, 'ccan' => (int) 7, 'cde' => (int) 5, 'cfa' => (int) 8, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 4, 'dca' => (int) 5, 'din' => (int) 5, 'dzi' => (int) 12, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 25, 'fve' => (int) 5, 'gma' => (int) 9, 'ghi' => (int) 18, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 7, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 5, 'sun' => (int) 2, 'lal' => (int) 9, 'lja' => (int) 5, 'lonja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 9, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 2, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 3, 'stu' => (int) 6, 'pvu' => (int) 4, 'ptr' => (int) 8, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 3, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 1, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 5, 'sas' => (int) 5, 'shi' => (int) 6, 'smo' => (int) 6, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 3, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420150' $species_info = array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ) $local_species = 'nnu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000968', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p31690' => 'bna', 'A03p36040' => 'bna', 'A03p53730' => 'bna', 'A04p01410' => 'bna', 'A05p05420' => 'bna', 'A05p39630' => 'bna', 'A05p39640' => 'bna', 'A09p00970' => 'bna', 'A09p53060' => 'bna', 'A10p31890' => 'bna', 'Aa31LG10G15040' => 'aar', 'Aa31LG1G21090' => 'aar', 'Aa31LG1G26900' => 'aar', 'Aa31LG3G1820' => 'aar', 'Aa31LG5G1100' => 'aar', 'Aa31LG6G4740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2265' => 'aag', 'Actinidia07998' => 'ach', 'Actinidia11266' => 'ach', 'Actinidia12682' => 'ach', 'Actinidia26479' => 'ach', 'Actinidia31406' => 'ach', 'Actinidia32437' => 'ach', 'Actinidia38862' => 'ach', 'Ah.05g174230' => 'amhyb', 'Ah.05g179070' => 'amhyb', 'Ah.05g179090' => 'amhyb', 'Ah.12g059950' => 'amhyb', 'AL3G20480' => 'aly', 'AL4G44520' => 'aly', 'AL5G43110' => 'aly', 'AL6G13890' => 'aly', 'AL6G52620' => 'aly', 'AL7G30830' => 'aly', 'Aqoxy1G00899' => 'aox', 'Aqoxy5G04333' => 'aox', 'Aqoxy7G00641' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3IZ0NN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4EF6AW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W9P8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79GA3M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C43NQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFCU6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G95YVJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCHK29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LU1UG8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX91RN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGB4B1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8DA0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9H7JI' => 'arhy', 'AT3G09320' => 'ath', 'AT3G60800' => 'ath', 'AT4G00840' => 'ath', 'AT4G22750' => 'ath', 'AT5G04270' => 'ath', 'ATR0090G003' => 'atr', 'ATR0559G349' => 'atr', 'ATR0680G261' => 'atr', 'ATR0810G048' => 'atr', 'Atru.chr12.831' => 'acertr', 'Atru.chr5.303' => 'acertr', 'Atru.chr5.748' => 'acertr', 'Atru.chr8.1999' => 'acertr', 'Atru.chr9.1436' => 'acertr', 'AUR62004211' => 'cqu', 'AUR62004548' => 'cqu', 'AUR62013637' => 'cqu', 'AUR62022662' => 'cqu', 'AUR62025777' => 'cqu', 'AUR62042386' => 'cqu', 'BcaB01g02310' => 'bca', 'BcaB01g06062' => 'bca', 'BcaB02g08975' => 'bca', 'BcaB02g08980' => 'bca', 'BcaC01g04228' => 'bca', 'BcaC01g06830' => 'bca', 'BcaC02g10186' => 'bca', 'BcaC02g12214' => 'bca', 'BcaC04g24101' => 'bca', 'BcaC05g29520' => 'bca', 'BcaC05g29661' => 'bca', 'BcaC06g32130' => 'bca', 'BcaC06g32131' => 'bca', 'BcaC07g40601' => 'bca', 'BcaC07g42641' => 'bca', 'BcaNung01038' => 'bca', 'BcaNung01676' => 'bca', 'BcaNung02480' => 'bca', 'BcaNung07376' => 'bca', 'BolC3t16146H' => 'bol', 'BolC3t16637H' => 'bol', 'BolC4t22257H' => 'bol', 'BolC4t24728H' => 'bol', 'BolC5t34517H' => 'bol', 'BolC7t45703H' => 'bol', 'BolC8t51166H' => 'bol', 'BolC9t53038H' => 'bol', 'BolC9t60000H' => 'bol', 'BraA01t01345Z' => 'bra', 'BraA01t01346Z' => 'bra', 'BraA01t01348Z' => 'bra', 'BraA03t12347Z' => 'bra', 'BraA03t12775Z' => 'bra', 'BraA03t14439Z' => 'bra', 'BraA04t15860Z' => 'bra', 'BraA05t19511Z' => 'bra', 'BraA05t22746Z' => 'bra', 'BraA09t35767Z' => 'bra', 'BraA09t40732Z' => 'bra', 'BraA10t45233Z' => 'bra', 'C03p38720' => 'bna', 'C03p43680' => 'bna', 'C04p06350' => 'bna', 'C04p31800' => 'bna', 'C05p58680' => 'bna', 'C07p52110' => 'bna', 'C08p35760' => 'bna', 'C09p01050' => 'bna', 'C09p72600' => 'bna', 'CAN.G106.2' => 'can', 'CAN.G1482.1' => 'can', 'CAN.G324.12' => 'can', 'CAN.G388.20' => 'can', 'CAN.G412.7' => 'can', 'CAN.G694.32' => 'can', 'CAN.G92.12' => 'can', 'CANSAT11G2353' => 'cansat', 'CANSAT21G1398' => 'cansat', 'CANSAT56G2456' => 'cansat', 'CANSAT56G3031' => 'cansat', 'CANSAT56G4539' => 'cansat', 'CARHR083680' => 'chi', 'CARHR171190' => 'chi', 'CARHR209010' => 'chi', 'CARHR229680' => 'chi', 'CARHR249490' => 'chi', 'Carub.0003s0844' => 'cru', 'Carub.0005s2755' => 'cru', 'Carub.0006s0322' => 'cru', 'Carub.0006s3586' => 'cru', 'Carub.0007s1855' => 'cru', 'Ca_07808_v3' => 'car', 'Ca_09535_v3' => 'car', 'Ca_10548_v3' => 'car', 'Ca_19913_v3' => 'car', 'Ca_19916_v3' => 'car', 'Ca_19975_v3' => 'car', 'CBR_g22876' => 'cbr', 'CBR_g22879' => 'cbr', 'CBR_g38491' => 'cbr', 'CBR_g54185' => 'cbr', 'CBR_g54190' => 'cbr', 'Cc02_g11020' => 'ccan', 'Cc02_g23920' => 'ccan', 'Cc02_g39860' => 'ccan', 'Cc02_g39870' => 'ccan', 'Cc03_g06760' => 'ccan', 'Cc06_g02450' => 'ccan', 'Cc09_g09450' => 'ccan', 'CDE02G1959' => 'cde', 'CDE04G0600' => 'cde', 'CDE07G1996' => 'cde', 'CDE07G2078' => 'cde', 'CDE11G0611' => 'cde', 'Cfa001683' => 'cfa', 'Cfa001734' => 'cfa', 'Cfa001737' => 'cfa', 'Cfa003751' => 'cfa', 'Cfa012019' => 'cfa', 'Cfa017353' => 'cfa', 'Cfa017732' => 'cfa', 'Cfa022464' => 'cfa', 'Ciclev10012400m.g' => 'ccl', 'Ciclev10021242m.g' => 'ccl', 'Ciclev10021302m.g' => 'ccl', 'Ciclev10021463m.g' => 'ccl', 'Ciclev10032359m.g' => 'ccl', 'CiPaw.01G081000' => 'cil', 'CiPaw.01G262500' => 'cil', 'CiPaw.01G269800' => 'cil', 'CiPaw.02G168400' => 'cil', 'CiPaw.05G119500' => 'cil', 'CiPaw.11G147300' => 'cil', 'ClCG01G003630' => 'cla', 'ClCG05G000510' => 'cla', 'ClCG05G002300' => 'cla', 'ClCG08G007650' => 'cla', 'ClCG10G021250' => 'cla', 'COL.COLO4_06218' => 'col', 'COL.COLO4_12538' => 'col', 'COL.COLO4_14775' => 'col', 'COL.COLO4_23875' => 'col', 'Cpa.g.sc141.16' => 'cpa', 'Cpa.g.sc169.16' => 'cpa', 'Cpa.g.sc244.4' => 'cpa', 'Cpa.g.sc244.5' => 'cpa', 'Cpa.g.sc29.87' => 'cpa', 'Cpa.g.sc53.115' => 'cpa', 'Cre03.g207502' => 'cre', 'Cre06.g277000' => 'cre', 'Cre09.g394050' => 'cre', 'CsaV3_3G007680' => 'csa', 'CsaV3_3G009710' => 'csa', 'CsaV3_3G034790' => 'csa', 'CsaV3_5G003750' => 'csa', 'CsaV3_6G036620' => 'csa', 'CSS0002288' => 'camsi', 'CSS0011250' => 'camsi', 'CSS0021619' => 'camsi', 'CSS0046701' => 'camsi', 'DCAR_006420' => 'dca', 'DCAR_006865' => 'dca', 'DCAR_008558' => 'dca', 'DCAR_028754' => 'dca', 'DCAR_028755' => 'dca', 'Dinv31218' => 'din', 'Dinv32371' => 'din', 'Dinv34250' => 'din', 'Dinv37156' => 'din', 'Dinv43704' => 'din', 'Duzib093G1811' => 'dzi', 'Duzib106G1622' => 'dzi', 'Duzib114G0504' => 'dzi', 'Duzib128G0338' => 'dzi', 'Duzib128G1577' => 'dzi', 'Duzib133G0104' => 'dzi', 'Duzib133G1080' => 'dzi', 'Duzib138G0324' => 'dzi', 'Duzib138G0394' => 'dzi', 'Duzib205G0122' => 'dzi', 'Duzib268G1020' => 'dzi', 'Duzib268G1359' => 'dzi', 'ECA232G3929' => 'eca', 'ECA236G2210' => 'eca', 'ECA236G2287' => 'eca', 'ECA240G4568' => 'eca', 'ECA247G0894' => 'eca', 'EL10Ac1g00200' => 'bvu', 'EL10Ac1g00886' => 'bvu', 'EL10As1g23091' => 'bvu', 'EL10As1g23092' => 'bvu', 'Eucgr.A01284' => 'egr', 'Eucgr.A01285' => 'egr', 'Eucgr.D02456' => 'egr', 'Eucgr.E00018' => 'egr', 'Eucgr.E01439' => 'egr', 'Eucgr.G02859' => 'egr', 'FAN01G0168' => 'fan', 'FAN01G0453' => 'fan', 'FAN01G2761' => 'fan', 'FAN02G1239' => 'fan', 'FAN03G0645' => 'fan', 'FAN03G2707' => 'fan', 'FAN03G2978' => 'fan', 'FAN04G0227' => 'fan', 'FAN06G0091' => 'fan', 'FAN06G1418' => 'fan', 'FAN06G1512' => 'fan', 'FAN06G1986' => 'fan', 'FAN06G2905' => 'fan', 'FAN06G4325' => 'fan', 'FAN08G0033' => 'fan', 'FAN09G0642' => 'fan', 'FAN10G1763' => 'fan', 'FAN10G2026' => 'fan', 'FAN10G2513' => 'fan', 'FAN10G3402' => 'fan', 'FAN10G3564' => 'fan', 'FAN10G3987' => 'fan', 'FAN13G1490' => 'fan', 'FAN14G5857' => 'fan', 'FAN18G1188' => 'fan', 'FvH4_5g00750' => 'fve', 'FvH4_6g13410' => 'fve', 'FvH4_7g11740' => 'fve', 'FvH4_7g17410' => 'fve', 'FvH4_7g18860' => 'fve', 'Glyma.01G099100' => 'gma', 'Glyma.01G142300' => 'gma', 'Glyma.03G025500' => 'gma', 'Glyma.03G069700' => 'gma', 'Glyma.03G260000' => 'gma', 'Glyma.09G269800' => 'gma', 'Glyma.10G208700' => 'gma', 'Glyma.18G220400' => 'gma', 'Glyma.20G182000' => 'gma', 'Gohir.A01G221726' => 'ghi', 'Gohir.A07G134600' => 'ghi', 'Gohir.A07G146000' => 'ghi', 'Gohir.A08G173900' => 'ghi', 'Gohir.A09G194900' => 'ghi', 'Gohir.A10G204100' => 'ghi', 'Gohir.A11G080600' => 'ghi', 'Gohir.A11G327500' => 'ghi', 'Gohir.A12G101800' => 'ghi', 'Gohir.D01G211200' => 'ghi', 'Gohir.D07G139200' => 'ghi', 'Gohir.D07G152100' => 'ghi', 'Gohir.D08G192600' => 'ghi', 'Gohir.D09G189200' => 'ghi', 'Gohir.D10G212000' => 'ghi', 'Gohir.D11G085200' => 'ghi', 'Gohir.D11G346400' => 'ghi', 'Gohir.D12G104800' => 'ghi', 'Gorai.001G151300' => 'gra', 'Gorai.001G174100' => 'gra', 'Gorai.002G257000' => 'gra', 'Gorai.004G202600' => 'gra', 'Gorai.007G090900' => 'gra', 'Gorai.007G376700' => 'gra', 'Gorai.008G114100' => 'gra', 'Gorai.011G237900' => 'gra', 'GSVIVG01005450001' => 'vvi', 'GSVIVG01016232001' => 'vvi', 'GSVIVG01026157001' => 'vvi', 'GSVIVG01027419001' => 'vvi', 'GSVIVG01027631001' => 'vvi', 'GSVIVG01034143001' => 'vvi', 'HanXRQChr03g0093921' => 'han', 'HanXRQChr04g0120001' => 'han', 'HanXRQChr04g0122561' => 'han', 'HanXRQChr09g0246851' => 'han', 'HanXRQChr10g0293311' => 'han', 'HanXRQChr13g0425231' => 'han', 'HanXRQChr16g0532571' => 'han', 'Haze_09050' => 'cav', 'Haze_15715' => 'cav', 'Haze_15716' => 'cav', 'Haze_16803' => 'cav', 'Haze_16850' => 'cav', 'Hma1.2p1_0301F.1_g118655' => 'hma', 'Hma1.2p1_0309F.1_g120590' => 'hma', 'Hma1.2p1_0936F.1_g238900' => 'hma', 'Hma1.2p1_3552F.1_g336740' => 'hma', 'HPP92_003520' => 'vpl', 'HPP92_006628' => 'vpl', 'HPP92_006645' => 'vpl', 'HPP92_014669' => 'vpl', 'HPP92_015077' => 'vpl', 'Hund16742' => 'sun', 'Hund17022' => 'sun', 'Lalb_Chr02g0152131' => 'lal', 'Lalb_Chr05g0225371' => 'lal', 'Lalb_Chr07g0189841' => 'lal', 'Lalb_Chr07g0192961' => 'lal', 'Lalb_Chr12g0208221' => 'lal', 'Lalb_Chr13g0291211' => 'lal', 'Lalb_Chr13g0291781' => 'lal', 'Lalb_Chr18g0044651' => 'lal', 'Lalb_Chr21g0313731' => 'lal', 'Lj1g0022533' => 'lja', 'Lj2A18T50' => 'lonja', 'Lj2A92G93' => 'lonja', 'Lj3A965T73' => 'lonja', 'Lj3g0000673' => 'lja', 'Lj3g0002666' => 'lja', 'Lj4g0016985' => 'lja', 'Lj5g0003625' => 'lja', 'Lj7A529G36' => 'lonja', 'Lj9A569T49' => 'lonja', 'Lj9A604T63' => 'lonja', 'Lsat_1_v5_gn_3_132060' => 'lsa', 'Lsat_1_v5_gn_4_68941' => 'lsa', 'Lsat_1_v5_gn_5_95580' => 'lsa', 'Lsat_1_v5_gn_7_161' => 'lsa', 'Lsat_1_v5_gn_7_7041' => 'lsa', 'Lsat_1_v5_gn_9_33481' => 'lsa', 'Lsat_1_v5_gn_9_68260' => 'lsa', 'Manes.01G073100' => 'mes', 'Manes.01G266300' => 'mes', 'Manes.02G033300' => 'mes', 'Manes.05G017900' => 'mes', 'Manes.05G046100' => 'mes', 'Manes.08G080900' => 'mes', 'Manes.10G049400' => 'mes', 'Mapoly0009s0186' => 'mpo', 'Mapoly0036s0118' => 'mpo', 'Mapoly0101s0046' => 'mpo', 'MBI04_g30218_MAGBIO' => 'mbi', 'MBI04_g35564_MAGBIO' => 'mbi', 'MBI12_g34011_MAGBIO' => 'mbi', 'MBI14_g04655_MAGBIO' => 'mbi', 'MCO07G653' => 'mco', 'MCO10G173' => 'mco', 'MD01G1087100' => 'mdo', 'MD01G1104200' => 'mdo', 'MD02G1205100' => 'mdo', 'MD04G1079200' => 'mdo', 'MD04G1131400' => 'mdo', 'MD07G1121600' => 'mdo', 'MD07G1157300' => 'mdo', 'MD07G1171000' => 'mdo', 'MD12G1144500' => 'mdo', 'Medtr1g094610' => 'mtr', 'Medtr4g021795' => 'mtr', 'Medtr4g023760' => 'mtr', 'Medtr7g118050' => 'mtr', 'MELO3C005582.2' => 'cme', 'MELO3C005989.2' => 'cme', 'MELO3C006192.2' => 'cme', 'MELO3C009248.2' => 'cme', 'MELO3C019817.2' => 'cme', 'Migut.B01625' => 'egut', 'Migut.B01915' => 'egut', 'Migut.F01721' => 'egut', 'Migut.J00314' => 'egut', 'MSTRG.20742' => 'ama', 'MSTRG.8134' => 'ama', 'Nitab4.5_0000096g0010' => 'nta', 'Nitab4.5_0000202g0030' => 'nta', 'Nitab4.5_0000216g0370' => 'nta', 'Nitab4.5_0000457g0230' => 'nta', 'Nitab4.5_0001702g0170' => 'nta', 'Nitab4.5_0003607g0010' => 'nta', 'Nitab4.5_0004917g0020' => 'nta', 'Nitab4.5_0007059g0010' => 'nta', 'Nitab4.5_0007184g0010' => 'nta', 'Nitab4.5_0007346g0020' => 'nta', 'Nn1g00410' => 'nnu', 'Nn1g01252' => 'nnu', 'Nn2g11168' => 'nnu', 'Nn2g13403' => 'nnu', 'Nn2g13760' => 'nnu', 'Nn4g26380' => 'nnu', 'Oeu000806.2' => 'oeu', 'Oeu005788.1' => 'oeu', 'Oeu006900.3' => 'oeu', 'Oeu007797.1' => 'oeu', 'Oeu011932.1' => 'oeu', 'Oeu022739.1' => 'oeu', 'Oeu037918.1' => 'oeu', 'Oeu055490.2' => 'oeu', 'Os01g0844400' => 'osa', 'Os02g0819100' => 'osa', 'Os03g0804300' => 'osa', 'Os05g0458000' => 'osa', 'Os07g0467800' => 'osa', 'Os12g0602200' => 'osa', 'Peaxi162Scf00013g03444' => 'pax', 'Peaxi162Scf00094g01120' => 'pax', 'Peaxi162Scf00191g01211' => 'pax', 'Peaxi162Scf00238g01110' => 'pax', 'Peaxi162Scf00330g00719' => 'pax', 'Peaxi162Scf00627g00018' => 'pax', 'PGR031G2686' => 'pgr', 'PGR042G0809' => 'pgr', 'PGR142G0193' => 'pgr', 'PGSC0003DMG400011066' => 'stu', 'PGSC0003DMG400012041' => 'stu', 'PGSC0003DMG400013678' => 'stu', 'PGSC0003DMG400023477' => 'stu', 'PGSC0003DMG400025956' => 'stu', 'PGSC0003DMG401019151' => 'stu', 'Phvul.006G116400' => 'pvu', 'Phvul.007G097300' => 'pvu', 'Phvul.010G015000' => 'pvu', 'Phvul.010G083900' => 'pvu', 'Potri.001G117100' => 'ptr', 'Potri.002G147300' => 'ptr', 'Potri.003G115600' => 'ptr', 'Potri.006G087400' => 'ptr', 'Potri.010G226100' => 'ptr', 'Potri.014G069200' => 'ptr', 'Potri.014G104000' => 'ptr', 'Potri.016G100200' => 'ptr', 'Pp3c10_20450' => 'ppa', 'Pp3c1_42400' => 'ppa', 'Pp3c3_24390' => 'ppa', 'Pp3c3_2860' => 'ppa', 'PRCOL_00003193' => 'pco', 'Prupe.2G144500' => 'ppe', 'Prupe.2G195700' => 'ppe', 'Prupe.2G209800' => 'ppe', 'Prupe.5G080000' => 'ppe', 'Prupe.6G257900' => 'ppe', 'Psat3g001160' => 'psa', 'Psat6g181880' => 'psa', 'Psat7g233720' => 'psa', 'PSO063G7587' => 'pso', 'PSO339G2145' => 'pso', 'PSO339G3369' => 'pso', 'PSO478G2747' => 'pso', 'PSO513G0140' => 'pso', 'PSO782G1614' => 'pso', 'PSO782G4889' => 'pso', 'PSO782G5485' => 'pso', 'PSO801G0241' => 'pso', 'QL07p048854' => 'qlo', 'QL08p046745' => 'qlo', 'QL08p052606' => 'qlo', 'QL08p053414' => 'qlo', 'QL08p054868' => 'qlo', 'RcHm_v2.0_Chr1g0350251' => 'rch', 'RcHm_v2.0_Chr1g0360851' => 'rch', 'RcHm_v2.0_Chr1g0362791' => 'rch', 'RcHm_v2.0_Chr3g0466281' => 'rch', 'RcHm_v2.0_Chr7g0201481' => 'rch', 'Rhsim01G0148600' => 'rsi', 'Rhsim05G0194400' => 'rsi', 'Rhsim07G0000700' => 'rsi', 'Rhsim07G0000800' => 'rsi', 'Rhsim07G0027900' => 'rsi', 'Rhsim09G0149500' => 'rsi', 'RhsimUnG0186900' => 'rsi', 'Sabra01G0089900' => 'sbr', 'Sabra02G0114700' => 'sbr', 'Sabra02G0116300' => 'sbr', 'Sabra03G0080100' => 'sbr', 'Sabra08G0024300' => 'sbr', 'Sabra10G0174300' => 'sbr', 'Sabra14G0048900' => 'sbr', 'Sabra14G0076500' => 'sbr', 'SalBow5G2513' => 'sbo', 'Sc01g0002300' => 'sci', 'Sc01g0004450' => 'sci', 'Sc06g0001680' => 'sci', 'Sc23g0003580' => 'sci', 'Sed0000913' => 'sed', 'Sed0001655' => 'sed', 'Sed0007745' => 'sed', 'Sed0010951' => 'sed', 'Sed0017599' => 'sed', 'Sed0021405' => 'sed', 'Sed0022810' => 'sed', 'SEGI_07099' => 'sgi', 'SEGI_11931' => 'sgi', 'SEGI_13187' => 'sgi', 'SEGI_29958' => 'sgi', 'SEGI_36351' => 'sgi', 'SGA_v2.0_scaffold126G33770' => 'sas', 'SGA_v2.0_scaffold153G37003' => 'sas', 'SGA_v2.0_scaffold2G01359' => 'sas', 'SGA_v2.0_scaffold5G03064' => 'sas', 'SGA_v2.0_scaffold95G28903' => 'sas', 'SHI12701' => 'shi', 'SHI26410' => 'shi', 'SHI38997' => 'shi', 'SHI53759' => 'shi', 'SHI53886' => 'shi', 'SHI54714' => 'shi', 'SMO011G0041' => 'smo', 'SMO146G0251' => 'smo', 'SMO160G0004' => 'smo', 'SMO174G0057' => 'smo', 'SMO244G0089' => 'smo', 'SMO296G0011' => 'smo', 'Solyc01g091280.3' => 'sly', 'Solyc05g047610.3' => 'sly', 'Solyc05g047640.3' => 'sly', 'Solyc05g055630.3' => 'sly', 'Solyc10g018160.2' => 'sly', 'Solyc10g084820.2' => 'sly', 'Solyc10g086565.2' => 'sly', 'Sopen01g037030' => 'spe', 'Sopen05g027920' => 'spe', 'Sopen05g034070' => 'spe', 'Sopen10g007260' => 'spe', 'Sopen10g034260' => 'spe', 'Sopen10g035950' => 'spe', 'Sp3g07710' => 'spa', 'Sp4g27420' => 'spa', 'Sp5g02450' => 'spa', 'Sp6g01280' => 'spa', 'Sp6g38480' => 'spa', 'Sp7g20780' => 'spa', 'TAR374G1413' => 'tar', 'TAR623G1777' => 'tar', 'TAR629G2370' => 'tar', 'TAR633G1759' => 'tar', 'TAR636G3387' => 'tar', 'THA.LOC104802447' => 'tha', 'THA.LOC104813916' => 'tha', 'THA.LOC104816423' => 'tha', 'THA.LOC104817246' => 'tha', 'THA.LOC104825895' => 'tha', 'Thecc.01G335200' => 'tca', 'Thecc.01G377400' => 'tca', 'Thecc.03G262200' => 'tca', 'Thecc.05G036800' => 'tca', 'Thecc.10G080500' => 'tca', 'Thecc.10G080800' => 'tca', 'Thhalv10001560m.g' => 'esa', 'Thhalv10006120m.g' => 'esa', 'Thhalv10014375m.g' => 'esa', 'Thhalv10021264m.g' => 'esa', 'Thhalv10028856m.g' => 'esa', 'TPR.G1914' => 'tpr', 'TPR.G4757' => 'tpr', 'TPR.G5595' => 'tpr', 'TWI14G0952' => 'twi', 'TWI14G1307' => 'twi', 'TWI38G2143' => 'twi', 'TWI59G0826' => 'twi', 'TWI77G0527' => 'twi', 'TWI81G0150' => 'twi', 'unitig_21.g21018' => 'ugi', 'unitig_26.g9725' => 'ugi', 'unitig_744.g24653' => 'ugi', 'unitig_749.g13778' => 'ugi', 'unitig_899.g15035' => 'ugi', 'vmacro04296' => 'vma', 'vmacro04852' => 'vma', 'vmacro13404' => 'vma', 'vmacro20169' => 'vma', 'vmacro21014' => 'vma', 'VMungo0331G0237' => 'vmu', 'VMungo0331G0706' => 'vmu', 'VMungo0331G1361' => 'vmu', 'VMungo0331G1489' => 'vmu', 'VMungo0540G1037' => 'vmu', 'VMungo0720G2487' => 'vmu', 'VMungo0720G2721' => 'vmu', 'Zm00001eb086860' => 'zma', 'Zm00001eb104760' => 'zma', 'Zm00001eb148220' => 'zma', 'Zm00001eb259030' => 'zma', 'Zm00001eb289590' => 'zma', 'Zm00001eb420150' => 'zma' ), 'gf_id' => 'HOM05D000968', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000968' ), 'data_identifier' => 'HOM05D000968', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000968', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p31690' => 'bna', 'A03p36040' => 'bna', 'A03p53730' => 'bna', 'A04p01410' => 'bna', 'A05p05420' => 'bna', 'A05p39630' => 'bna', 'A05p39640' => 'bna', 'A09p00970' => 'bna', 'A09p53060' => 'bna', 'A10p31890' => 'bna', 'Aa31LG10G15040' => 'aar', 'Aa31LG1G21090' => 'aar', 'Aa31LG1G26900' => 'aar', 'Aa31LG3G1820' => 'aar', 'Aa31LG5G1100' => 'aar', 'Aa31LG6G4740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2265' => 'aag', 'Actinidia07998' => 'ach', 'Actinidia11266' => 'ach', 'Actinidia12682' => 'ach', 'Actinidia26479' => 'ach', 'Actinidia31406' => 'ach', 'Actinidia32437' => 'ach', 'Actinidia38862' => 'ach', 'Ah.05g174230' => 'amhyb', 'Ah.05g179070' => 'amhyb', 'Ah.05g179090' => 'amhyb', 'Ah.12g059950' => 'amhyb', 'AL3G20480' => 'aly', 'AL4G44520' => 'aly', 'AL5G43110' => 'aly', 'AL6G13890' => 'aly', 'AL6G52620' => 'aly', 'AL7G30830' => 'aly', 'Aqoxy1G00899' => 'aox', 'Aqoxy5G04333' => 'aox', 'Aqoxy7G00641' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3IZ0NN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4EF6AW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W9P8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79GA3M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C43NQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFCU6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G95YVJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCHK29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LU1UG8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX91RN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGB4B1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8DA0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9H7JI' => 'arhy', 'AT3G09320' => 'ath', 'AT3G60800' => 'ath', 'AT4G00840' => 'ath', 'AT4G22750' => 'ath', 'AT5G04270' => 'ath', 'ATR0090G003' => 'atr', 'ATR0559G349' => 'atr', 'ATR0680G261' => 'atr', 'ATR0810G048' => 'atr', 'Atru.chr12.831' => 'acertr', 'Atru.chr5.303' => 'acertr', 'Atru.chr5.748' => 'acertr', 'Atru.chr8.1999' => 'acertr', 'Atru.chr9.1436' => 'acertr', 'AUR62004211' => 'cqu', 'AUR62004548' => 'cqu', 'AUR62013637' => 'cqu', 'AUR62022662' => 'cqu', 'AUR62025777' => 'cqu', 'AUR62042386' => 'cqu', 'BcaB01g02310' => 'bca', 'BcaB01g06062' => 'bca', 'BcaB02g08975' => 'bca', 'BcaB02g08980' => 'bca', 'BcaC01g04228' => 'bca', 'BcaC01g06830' => 'bca', 'BcaC02g10186' => 'bca', 'BcaC02g12214' => 'bca', 'BcaC04g24101' => 'bca', 'BcaC05g29520' => 'bca', 'BcaC05g29661' => 'bca', 'BcaC06g32130' => 'bca', 'BcaC06g32131' => 'bca', 'BcaC07g40601' => 'bca', 'BcaC07g42641' => 'bca', 'BcaNung01038' => 'bca', 'BcaNung01676' => 'bca', 'BcaNung02480' => 'bca', 'BcaNung07376' => 'bca', 'BolC3t16146H' => 'bol', 'BolC3t16637H' => 'bol', 'BolC4t22257H' => 'bol', 'BolC4t24728H' => 'bol', 'BolC5t34517H' => 'bol', 'BolC7t45703H' => 'bol', 'BolC8t51166H' => 'bol', 'BolC9t53038H' => 'bol', 'BolC9t60000H' => 'bol', 'BraA01t01345Z' => 'bra', 'BraA01t01346Z' => 'bra', 'BraA01t01348Z' => 'bra', 'BraA03t12347Z' => 'bra', 'BraA03t12775Z' => 'bra', 'BraA03t14439Z' => 'bra', 'BraA04t15860Z' => 'bra', 'BraA05t19511Z' => 'bra', 'BraA05t22746Z' => 'bra', 'BraA09t35767Z' => 'bra', 'BraA09t40732Z' => 'bra', 'BraA10t45233Z' => 'bra', 'C03p38720' => 'bna', 'C03p43680' => 'bna', 'C04p06350' => 'bna', 'C04p31800' => 'bna', 'C05p58680' => 'bna', 'C07p52110' => 'bna', 'C08p35760' => 'bna', 'C09p01050' => 'bna', 'C09p72600' => 'bna', 'CAN.G106.2' => 'can', 'CAN.G1482.1' => 'can', 'CAN.G324.12' => 'can', 'CAN.G388.20' => 'can', 'CAN.G412.7' => 'can', 'CAN.G694.32' => 'can', 'CAN.G92.12' => 'can', 'CANSAT11G2353' => 'cansat', 'CANSAT21G1398' => 'cansat', 'CANSAT56G2456' => 'cansat', 'CANSAT56G3031' => 'cansat', 'CANSAT56G4539' => 'cansat', 'CARHR083680' => 'chi', 'CARHR171190' => 'chi', 'CARHR209010' => 'chi', 'CARHR229680' => 'chi', 'CARHR249490' => 'chi', 'Carub.0003s0844' => 'cru', 'Carub.0005s2755' => 'cru', 'Carub.0006s0322' => 'cru', 'Carub.0006s3586' => 'cru', 'Carub.0007s1855' => 'cru', 'Ca_07808_v3' => 'car', 'Ca_09535_v3' => 'car', 'Ca_10548_v3' => 'car', 'Ca_19913_v3' => 'car', 'Ca_19916_v3' => 'car', 'Ca_19975_v3' => 'car', 'CBR_g22876' => 'cbr', 'CBR_g22879' => 'cbr', 'CBR_g38491' => 'cbr', 'CBR_g54185' => 'cbr', 'CBR_g54190' => 'cbr', 'Cc02_g11020' => 'ccan', 'Cc02_g23920' => 'ccan', 'Cc02_g39860' => 'ccan', 'Cc02_g39870' => 'ccan', 'Cc03_g06760' => 'ccan', 'Cc06_g02450' => 'ccan', 'Cc09_g09450' => 'ccan', 'CDE02G1959' => 'cde', 'CDE04G0600' => 'cde', 'CDE07G1996' => 'cde', 'CDE07G2078' => 'cde', 'CDE11G0611' => 'cde', 'Cfa001683' => 'cfa', 'Cfa001734' => 'cfa', 'Cfa001737' => 'cfa', 'Cfa003751' => 'cfa', 'Cfa012019' => 'cfa', 'Cfa017353' => 'cfa', 'Cfa017732' => 'cfa', 'Cfa022464' => 'cfa', 'Ciclev10012400m.g' => 'ccl', 'Ciclev10021242m.g' => 'ccl', 'Ciclev10021302m.g' => 'ccl', 'Ciclev10021463m.g' => 'ccl', 'Ciclev10032359m.g' => 'ccl', 'CiPaw.01G081000' => 'cil', 'CiPaw.01G262500' => 'cil', 'CiPaw.01G269800' => 'cil', 'CiPaw.02G168400' => 'cil', 'CiPaw.05G119500' => 'cil', 'CiPaw.11G147300' => 'cil', 'ClCG01G003630' => 'cla', 'ClCG05G000510' => 'cla', 'ClCG05G002300' => 'cla', 'ClCG08G007650' => 'cla', 'ClCG10G021250' => 'cla', 'COL.COLO4_06218' => 'col', 'COL.COLO4_12538' => 'col', 'COL.COLO4_14775' => 'col', 'COL.COLO4_23875' => 'col', 'Cpa.g.sc141.16' => 'cpa', 'Cpa.g.sc169.16' => 'cpa', 'Cpa.g.sc244.4' => 'cpa', 'Cpa.g.sc244.5' => 'cpa', 'Cpa.g.sc29.87' => 'cpa', 'Cpa.g.sc53.115' => 'cpa', 'Cre03.g207502' => 'cre', 'Cre06.g277000' => 'cre', 'Cre09.g394050' => 'cre', 'CsaV3_3G007680' => 'csa', 'CsaV3_3G009710' => 'csa', 'CsaV3_3G034790' => 'csa', 'CsaV3_5G003750' => 'csa', 'CsaV3_6G036620' => 'csa', 'CSS0002288' => 'camsi', 'CSS0011250' => 'camsi', 'CSS0021619' => 'camsi', 'CSS0046701' => 'camsi', 'DCAR_006420' => 'dca', 'DCAR_006865' => 'dca', 'DCAR_008558' => 'dca', 'DCAR_028754' => 'dca', 'DCAR_028755' => 'dca', 'Dinv31218' => 'din', 'Dinv32371' => 'din', 'Dinv34250' => 'din', 'Dinv37156' => 'din', 'Dinv43704' => 'din', 'Duzib093G1811' => 'dzi', 'Duzib106G1622' => 'dzi', 'Duzib114G0504' => 'dzi', 'Duzib128G0338' => 'dzi', 'Duzib128G1577' => 'dzi', 'Duzib133G0104' => 'dzi', 'Duzib133G1080' => 'dzi', 'Duzib138G0324' => 'dzi', 'Duzib138G0394' => 'dzi', 'Duzib205G0122' => 'dzi', 'Duzib268G1020' => 'dzi', 'Duzib268G1359' => 'dzi', 'ECA232G3929' => 'eca', 'ECA236G2210' => 'eca', 'ECA236G2287' => 'eca', 'ECA240G4568' => 'eca', 'ECA247G0894' => 'eca', 'EL10Ac1g00200' => 'bvu', 'EL10Ac1g00886' => 'bvu', 'EL10As1g23091' => 'bvu', 'EL10As1g23092' => 'bvu', 'Eucgr.A01284' => 'egr', 'Eucgr.A01285' => 'egr', 'Eucgr.D02456' => 'egr', 'Eucgr.E00018' => 'egr', 'Eucgr.E01439' => 'egr', 'Eucgr.G02859' => 'egr', 'FAN01G0168' => 'fan', 'FAN01G0453' => 'fan', 'FAN01G2761' => 'fan', 'FAN02G1239' => 'fan', 'FAN03G0645' => 'fan', 'FAN03G2707' => 'fan', 'FAN03G2978' => 'fan', 'FAN04G0227' => 'fan', 'FAN06G0091' => 'fan', 'FAN06G1418' => 'fan', 'FAN06G1512' => 'fan', 'FAN06G1986' => 'fan', 'FAN06G2905' => 'fan', 'FAN06G4325' => 'fan', 'FAN08G0033' => 'fan', 'FAN09G0642' => 'fan', 'FAN10G1763' => 'fan', 'FAN10G2026' => 'fan', 'FAN10G2513' => 'fan', 'FAN10G3402' => 'fan', 'FAN10G3564' => 'fan', 'FAN10G3987' => 'fan', 'FAN13G1490' => 'fan', 'FAN14G5857' => 'fan', 'FAN18G1188' => 'fan', 'FvH4_5g00750' => 'fve', 'FvH4_6g13410' => 'fve', 'FvH4_7g11740' => 'fve', 'FvH4_7g17410' => 'fve', 'FvH4_7g18860' => 'fve', 'Glyma.01G099100' => 'gma', 'Glyma.01G142300' => 'gma', 'Glyma.03G025500' => 'gma', 'Glyma.03G069700' => 'gma', 'Glyma.03G260000' => 'gma', 'Glyma.09G269800' => 'gma', 'Glyma.10G208700' => 'gma', 'Glyma.18G220400' => 'gma', 'Glyma.20G182000' => 'gma', 'Gohir.A01G221726' => 'ghi', 'Gohir.A07G134600' => 'ghi', 'Gohir.A07G146000' => 'ghi', 'Gohir.A08G173900' => 'ghi', 'Gohir.A09G194900' => 'ghi', 'Gohir.A10G204100' => 'ghi', 'Gohir.A11G080600' => 'ghi', 'Gohir.A11G327500' => 'ghi', 'Gohir.A12G101800' => 'ghi', 'Gohir.D01G211200' => 'ghi', 'Gohir.D07G139200' => 'ghi', 'Gohir.D07G152100' => 'ghi', 'Gohir.D08G192600' => 'ghi', 'Gohir.D09G189200' => 'ghi', 'Gohir.D10G212000' => 'ghi', 'Gohir.D11G085200' => 'ghi', 'Gohir.D11G346400' => 'ghi', 'Gohir.D12G104800' => 'ghi', 'Gorai.001G151300' => 'gra', 'Gorai.001G174100' => 'gra', 'Gorai.002G257000' => 'gra', 'Gorai.004G202600' => 'gra', 'Gorai.007G090900' => 'gra', 'Gorai.007G376700' => 'gra', 'Gorai.008G114100' => 'gra', 'Gorai.011G237900' => 'gra', 'GSVIVG01005450001' => 'vvi', 'GSVIVG01016232001' => 'vvi', 'GSVIVG01026157001' => 'vvi', 'GSVIVG01027419001' => 'vvi', 'GSVIVG01027631001' => 'vvi', 'GSVIVG01034143001' => 'vvi', 'HanXRQChr03g0093921' => 'han', 'HanXRQChr04g0120001' => 'han', 'HanXRQChr04g0122561' => 'han', 'HanXRQChr09g0246851' => 'han', 'HanXRQChr10g0293311' => 'han', 'HanXRQChr13g0425231' => 'han', 'HanXRQChr16g0532571' => 'han', 'Haze_09050' => 'cav', 'Haze_15715' => 'cav', 'Haze_15716' => 'cav', 'Haze_16803' => 'cav', 'Haze_16850' => 'cav', 'Hma1.2p1_0301F.1_g118655' => 'hma', 'Hma1.2p1_0309F.1_g120590' => 'hma', 'Hma1.2p1_0936F.1_g238900' => 'hma', 'Hma1.2p1_3552F.1_g336740' => 'hma', 'HPP92_003520' => 'vpl', 'HPP92_006628' => 'vpl', 'HPP92_006645' => 'vpl', 'HPP92_014669' => 'vpl', 'HPP92_015077' => 'vpl', 'Hund16742' => 'sun', 'Hund17022' => 'sun', 'Lalb_Chr02g0152131' => 'lal', 'Lalb_Chr05g0225371' => 'lal', 'Lalb_Chr07g0189841' => 'lal', 'Lalb_Chr07g0192961' => 'lal', 'Lalb_Chr12g0208221' => 'lal', 'Lalb_Chr13g0291211' => 'lal', 'Lalb_Chr13g0291781' => 'lal', 'Lalb_Chr18g0044651' => 'lal', 'Lalb_Chr21g0313731' => 'lal', 'Lj1g0022533' => 'lja', 'Lj2A18T50' => 'lonja', 'Lj2A92G93' => 'lonja', 'Lj3A965T73' => 'lonja', 'Lj3g0000673' => 'lja', 'Lj3g0002666' => 'lja', 'Lj4g0016985' => 'lja', 'Lj5g0003625' => 'lja', 'Lj7A529G36' => 'lonja', 'Lj9A569T49' => 'lonja', 'Lj9A604T63' => 'lonja', 'Lsat_1_v5_gn_3_132060' => 'lsa', 'Lsat_1_v5_gn_4_68941' => 'lsa', 'Lsat_1_v5_gn_5_95580' => 'lsa', 'Lsat_1_v5_gn_7_161' => 'lsa', 'Lsat_1_v5_gn_7_7041' => 'lsa', 'Lsat_1_v5_gn_9_33481' => 'lsa', 'Lsat_1_v5_gn_9_68260' => 'lsa', 'Manes.01G073100' => 'mes', 'Manes.01G266300' => 'mes', 'Manes.02G033300' => 'mes', 'Manes.05G017900' => 'mes', 'Manes.05G046100' => 'mes', 'Manes.08G080900' => 'mes', 'Manes.10G049400' => 'mes', 'Mapoly0009s0186' => 'mpo', 'Mapoly0036s0118' => 'mpo', 'Mapoly0101s0046' => 'mpo', 'MBI04_g30218_MAGBIO' => 'mbi', 'MBI04_g35564_MAGBIO' => 'mbi', 'MBI12_g34011_MAGBIO' => 'mbi', 'MBI14_g04655_MAGBIO' => 'mbi', 'MCO07G653' => 'mco', 'MCO10G173' => 'mco', 'MD01G1087100' => 'mdo', 'MD01G1104200' => 'mdo', 'MD02G1205100' => 'mdo', 'MD04G1079200' => 'mdo', 'MD04G1131400' => 'mdo', 'MD07G1121600' => 'mdo', 'MD07G1157300' => 'mdo', 'MD07G1171000' => 'mdo', 'MD12G1144500' => 'mdo', 'Medtr1g094610' => 'mtr', 'Medtr4g021795' => 'mtr', 'Medtr4g023760' => 'mtr', 'Medtr7g118050' => 'mtr', 'MELO3C005582.2' => 'cme', 'MELO3C005989.2' => 'cme', 'MELO3C006192.2' => 'cme', 'MELO3C009248.2' => 'cme', 'MELO3C019817.2' => 'cme', 'Migut.B01625' => 'egut', 'Migut.B01915' => 'egut', 'Migut.F01721' => 'egut', 'Migut.J00314' => 'egut', 'MSTRG.20742' => 'ama', 'MSTRG.8134' => 'ama', 'Nitab4.5_0000096g0010' => 'nta', 'Nitab4.5_0000202g0030' => 'nta', 'Nitab4.5_0000216g0370' => 'nta', 'Nitab4.5_0000457g0230' => 'nta', 'Nitab4.5_0001702g0170' => 'nta', 'Nitab4.5_0003607g0010' => 'nta', 'Nitab4.5_0004917g0020' => 'nta', 'Nitab4.5_0007059g0010' => 'nta', 'Nitab4.5_0007184g0010' => 'nta', 'Nitab4.5_0007346g0020' => 'nta', 'Nn1g00410' => 'nnu', 'Nn1g01252' => 'nnu', 'Nn2g11168' => 'nnu', 'Nn2g13403' => 'nnu', 'Nn2g13760' => 'nnu', 'Nn4g26380' => 'nnu', 'Oeu000806.2' => 'oeu', 'Oeu005788.1' => 'oeu', 'Oeu006900.3' => 'oeu', 'Oeu007797.1' => 'oeu', 'Oeu011932.1' => 'oeu', 'Oeu022739.1' => 'oeu', 'Oeu037918.1' => 'oeu', 'Oeu055490.2' => 'oeu', 'Os01g0844400' => 'osa', 'Os02g0819100' => 'osa', 'Os03g0804300' => 'osa', 'Os05g0458000' => 'osa', 'Os07g0467800' => 'osa', 'Os12g0602200' => 'osa', 'Peaxi162Scf00013g03444' => 'pax', 'Peaxi162Scf00094g01120' => 'pax', 'Peaxi162Scf00191g01211' => 'pax', 'Peaxi162Scf00238g01110' => 'pax', 'Peaxi162Scf00330g00719' => 'pax', 'Peaxi162Scf00627g00018' => 'pax', 'PGR031G2686' => 'pgr', 'PGR042G0809' => 'pgr', 'PGR142G0193' => 'pgr', 'PGSC0003DMG400011066' => 'stu', 'PGSC0003DMG400012041' => 'stu', 'PGSC0003DMG400013678' => 'stu', 'PGSC0003DMG400023477' => 'stu', 'PGSC0003DMG400025956' => 'stu', 'PGSC0003DMG401019151' => 'stu', 'Phvul.006G116400' => 'pvu', 'Phvul.007G097300' => 'pvu', 'Phvul.010G015000' => 'pvu', 'Phvul.010G083900' => 'pvu', 'Potri.001G117100' => 'ptr', 'Potri.002G147300' => 'ptr', 'Potri.003G115600' => 'ptr', 'Potri.006G087400' => 'ptr', 'Potri.010G226100' => 'ptr', 'Potri.014G069200' => 'ptr', 'Potri.014G104000' => 'ptr', 'Potri.016G100200' => 'ptr', 'Pp3c10_20450' => 'ppa', 'Pp3c1_42400' => 'ppa', 'Pp3c3_24390' => 'ppa', 'Pp3c3_2860' => 'ppa', 'PRCOL_00003193' => 'pco', 'Prupe.2G144500' => 'ppe', 'Prupe.2G195700' => 'ppe', 'Prupe.2G209800' => 'ppe', 'Prupe.5G080000' => 'ppe', 'Prupe.6G257900' => 'ppe', 'Psat3g001160' => 'psa', 'Psat6g181880' => 'psa', 'Psat7g233720' => 'psa', 'PSO063G7587' => 'pso', 'PSO339G2145' => 'pso', 'PSO339G3369' => 'pso', 'PSO478G2747' => 'pso', 'PSO513G0140' => 'pso', 'PSO782G1614' => 'pso', 'PSO782G4889' => 'pso', 'PSO782G5485' => 'pso', 'PSO801G0241' => 'pso', 'QL07p048854' => 'qlo', 'QL08p046745' => 'qlo', 'QL08p052606' => 'qlo', 'QL08p053414' => 'qlo', 'QL08p054868' => 'qlo', 'RcHm_v2.0_Chr1g0350251' => 'rch', 'RcHm_v2.0_Chr1g0360851' => 'rch', 'RcHm_v2.0_Chr1g0362791' => 'rch', 'RcHm_v2.0_Chr3g0466281' => 'rch', 'RcHm_v2.0_Chr7g0201481' => 'rch', 'Rhsim01G0148600' => 'rsi', 'Rhsim05G0194400' => 'rsi', 'Rhsim07G0000700' => 'rsi', 'Rhsim07G0000800' => 'rsi', 'Rhsim07G0027900' => 'rsi', 'Rhsim09G0149500' => 'rsi', 'RhsimUnG0186900' => 'rsi', 'Sabra01G0089900' => 'sbr', 'Sabra02G0114700' => 'sbr', 'Sabra02G0116300' => 'sbr', 'Sabra03G0080100' => 'sbr', 'Sabra08G0024300' => 'sbr', 'Sabra10G0174300' => 'sbr', 'Sabra14G0048900' => 'sbr', 'Sabra14G0076500' => 'sbr', 'SalBow5G2513' => 'sbo', 'Sc01g0002300' => 'sci', 'Sc01g0004450' => 'sci', 'Sc06g0001680' => 'sci', 'Sc23g0003580' => 'sci', 'Sed0000913' => 'sed', 'Sed0001655' => 'sed', 'Sed0007745' => 'sed', 'Sed0010951' => 'sed', 'Sed0017599' => 'sed', 'Sed0021405' => 'sed', 'Sed0022810' => 'sed', 'SEGI_07099' => 'sgi', 'SEGI_11931' => 'sgi', 'SEGI_13187' => 'sgi', 'SEGI_29958' => 'sgi', 'SEGI_36351' => 'sgi', 'SGA_v2.0_scaffold126G33770' => 'sas', 'SGA_v2.0_scaffold153G37003' => 'sas', 'SGA_v2.0_scaffold2G01359' => 'sas', 'SGA_v2.0_scaffold5G03064' => 'sas', 'SGA_v2.0_scaffold95G28903' => 'sas', 'SHI12701' => 'shi', 'SHI26410' => 'shi', 'SHI38997' => 'shi', 'SHI53759' => 'shi', 'SHI53886' => 'shi', 'SHI54714' => 'shi', 'SMO011G0041' => 'smo', 'SMO146G0251' => 'smo', 'SMO160G0004' => 'smo', 'SMO174G0057' => 'smo', 'SMO244G0089' => 'smo', 'SMO296G0011' => 'smo', 'Solyc01g091280.3' => 'sly', 'Solyc05g047610.3' => 'sly', 'Solyc05g047640.3' => 'sly', 'Solyc05g055630.3' => 'sly', 'Solyc10g018160.2' => 'sly', 'Solyc10g084820.2' => 'sly', 'Solyc10g086565.2' => 'sly', 'Sopen01g037030' => 'spe', 'Sopen05g027920' => 'spe', 'Sopen05g034070' => 'spe', 'Sopen10g007260' => 'spe', 'Sopen10g034260' => 'spe', 'Sopen10g035950' => 'spe', 'Sp3g07710' => 'spa', 'Sp4g27420' => 'spa', 'Sp5g02450' => 'spa', 'Sp6g01280' => 'spa', 'Sp6g38480' => 'spa', 'Sp7g20780' => 'spa', 'TAR374G1413' => 'tar', 'TAR623G1777' => 'tar', 'TAR629G2370' => 'tar', 'TAR633G1759' => 'tar', 'TAR636G3387' => 'tar', 'THA.LOC104802447' => 'tha', 'THA.LOC104813916' => 'tha', 'THA.LOC104816423' => 'tha', 'THA.LOC104817246' => 'tha', 'THA.LOC104825895' => 'tha', 'Thecc.01G335200' => 'tca', 'Thecc.01G377400' => 'tca', 'Thecc.03G262200' => 'tca', 'Thecc.05G036800' => 'tca', 'Thecc.10G080500' => 'tca', 'Thecc.10G080800' => 'tca', 'Thhalv10001560m.g' => 'esa', 'Thhalv10006120m.g' => 'esa', 'Thhalv10014375m.g' => 'esa', 'Thhalv10021264m.g' => 'esa', 'Thhalv10028856m.g' => 'esa', 'TPR.G1914' => 'tpr', 'TPR.G4757' => 'tpr', 'TPR.G5595' => 'tpr', 'TWI14G0952' => 'twi', 'TWI14G1307' => 'twi', 'TWI38G2143' => 'twi', 'TWI59G0826' => 'twi', 'TWI77G0527' => 'twi', 'TWI81G0150' => 'twi', 'unitig_21.g21018' => 'ugi', 'unitig_26.g9725' => 'ugi', 'unitig_744.g24653' => 'ugi', 'unitig_749.g13778' => 'ugi', 'unitig_899.g15035' => 'ugi', 'vmacro04296' => 'vma', 'vmacro04852' => 'vma', 'vmacro13404' => 'vma', 'vmacro20169' => 'vma', 'vmacro21014' => 'vma', 'VMungo0331G0237' => 'vmu', 'VMungo0331G0706' => 'vmu', 'VMungo0331G1361' => 'vmu', 'VMungo0331G1489' => 'vmu', 'VMungo0540G1037' => 'vmu', 'VMungo0720G2487' => 'vmu', 'VMungo0720G2721' => 'vmu', 'Zm00001eb086860' => 'zma', 'Zm00001eb104760' => 'zma', 'Zm00001eb148220' => 'zma', 'Zm00001eb259030' => 'zma', 'Zm00001eb289590' => 'zma', 'Zm00001eb420150' => 'zma' ) $gf_id = 'HOM05D000968' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000968' ) $data_identifier = 'HOM05D000968' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 19, 'bol' => (int) 9, 'bra' => (int) 12, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 5, 'ccan' => (int) 7, 'cde' => (int) 5, 'cfa' => (int) 8, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 4, 'dca' => (int) 5, 'din' => (int) 5, 'dzi' => (int) 12, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 25, 'fve' => (int) 5, 'gma' => (int) 9, 'ghi' => (int) 18, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 7, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 5, 'sun' => (int) 2, 'lal' => (int) 9, 'lja' => (int) 5, 'lonja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 9, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 2, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 3, 'stu' => (int) 6, 'pvu' => (int) 4, 'ptr' => (int) 8, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 3, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 1, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 5, 'sas' => (int) 5, 'shi' => (int) 6, 'smo' => (int) 6, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 3, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420150' $species_info = array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ) $local_species = 'nta' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000968', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p31690' => 'bna', 'A03p36040' => 'bna', 'A03p53730' => 'bna', 'A04p01410' => 'bna', 'A05p05420' => 'bna', 'A05p39630' => 'bna', 'A05p39640' => 'bna', 'A09p00970' => 'bna', 'A09p53060' => 'bna', 'A10p31890' => 'bna', 'Aa31LG10G15040' => 'aar', 'Aa31LG1G21090' => 'aar', 'Aa31LG1G26900' => 'aar', 'Aa31LG3G1820' => 'aar', 'Aa31LG5G1100' => 'aar', 'Aa31LG6G4740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2265' => 'aag', 'Actinidia07998' => 'ach', 'Actinidia11266' => 'ach', 'Actinidia12682' => 'ach', 'Actinidia26479' => 'ach', 'Actinidia31406' => 'ach', 'Actinidia32437' => 'ach', 'Actinidia38862' => 'ach', 'Ah.05g174230' => 'amhyb', 'Ah.05g179070' => 'amhyb', 'Ah.05g179090' => 'amhyb', 'Ah.12g059950' => 'amhyb', 'AL3G20480' => 'aly', 'AL4G44520' => 'aly', 'AL5G43110' => 'aly', 'AL6G13890' => 'aly', 'AL6G52620' => 'aly', 'AL7G30830' => 'aly', 'Aqoxy1G00899' => 'aox', 'Aqoxy5G04333' => 'aox', 'Aqoxy7G00641' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3IZ0NN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4EF6AW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W9P8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79GA3M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C43NQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFCU6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G95YVJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCHK29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LU1UG8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX91RN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGB4B1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8DA0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9H7JI' => 'arhy', 'AT3G09320' => 'ath', 'AT3G60800' => 'ath', 'AT4G00840' => 'ath', 'AT4G22750' => 'ath', 'AT5G04270' => 'ath', 'ATR0090G003' => 'atr', 'ATR0559G349' => 'atr', 'ATR0680G261' => 'atr', 'ATR0810G048' => 'atr', 'Atru.chr12.831' => 'acertr', 'Atru.chr5.303' => 'acertr', 'Atru.chr5.748' => 'acertr', 'Atru.chr8.1999' => 'acertr', 'Atru.chr9.1436' => 'acertr', 'AUR62004211' => 'cqu', 'AUR62004548' => 'cqu', 'AUR62013637' => 'cqu', 'AUR62022662' => 'cqu', 'AUR62025777' => 'cqu', 'AUR62042386' => 'cqu', 'BcaB01g02310' => 'bca', 'BcaB01g06062' => 'bca', 'BcaB02g08975' => 'bca', 'BcaB02g08980' => 'bca', 'BcaC01g04228' => 'bca', 'BcaC01g06830' => 'bca', 'BcaC02g10186' => 'bca', 'BcaC02g12214' => 'bca', 'BcaC04g24101' => 'bca', 'BcaC05g29520' => 'bca', 'BcaC05g29661' => 'bca', 'BcaC06g32130' => 'bca', 'BcaC06g32131' => 'bca', 'BcaC07g40601' => 'bca', 'BcaC07g42641' => 'bca', 'BcaNung01038' => 'bca', 'BcaNung01676' => 'bca', 'BcaNung02480' => 'bca', 'BcaNung07376' => 'bca', 'BolC3t16146H' => 'bol', 'BolC3t16637H' => 'bol', 'BolC4t22257H' => 'bol', 'BolC4t24728H' => 'bol', 'BolC5t34517H' => 'bol', 'BolC7t45703H' => 'bol', 'BolC8t51166H' => 'bol', 'BolC9t53038H' => 'bol', 'BolC9t60000H' => 'bol', 'BraA01t01345Z' => 'bra', 'BraA01t01346Z' => 'bra', 'BraA01t01348Z' => 'bra', 'BraA03t12347Z' => 'bra', 'BraA03t12775Z' => 'bra', 'BraA03t14439Z' => 'bra', 'BraA04t15860Z' => 'bra', 'BraA05t19511Z' => 'bra', 'BraA05t22746Z' => 'bra', 'BraA09t35767Z' => 'bra', 'BraA09t40732Z' => 'bra', 'BraA10t45233Z' => 'bra', 'C03p38720' => 'bna', 'C03p43680' => 'bna', 'C04p06350' => 'bna', 'C04p31800' => 'bna', 'C05p58680' => 'bna', 'C07p52110' => 'bna', 'C08p35760' => 'bna', 'C09p01050' => 'bna', 'C09p72600' => 'bna', 'CAN.G106.2' => 'can', 'CAN.G1482.1' => 'can', 'CAN.G324.12' => 'can', 'CAN.G388.20' => 'can', 'CAN.G412.7' => 'can', 'CAN.G694.32' => 'can', 'CAN.G92.12' => 'can', 'CANSAT11G2353' => 'cansat', 'CANSAT21G1398' => 'cansat', 'CANSAT56G2456' => 'cansat', 'CANSAT56G3031' => 'cansat', 'CANSAT56G4539' => 'cansat', 'CARHR083680' => 'chi', 'CARHR171190' => 'chi', 'CARHR209010' => 'chi', 'CARHR229680' => 'chi', 'CARHR249490' => 'chi', 'Carub.0003s0844' => 'cru', 'Carub.0005s2755' => 'cru', 'Carub.0006s0322' => 'cru', 'Carub.0006s3586' => 'cru', 'Carub.0007s1855' => 'cru', 'Ca_07808_v3' => 'car', 'Ca_09535_v3' => 'car', 'Ca_10548_v3' => 'car', 'Ca_19913_v3' => 'car', 'Ca_19916_v3' => 'car', 'Ca_19975_v3' => 'car', 'CBR_g22876' => 'cbr', 'CBR_g22879' => 'cbr', 'CBR_g38491' => 'cbr', 'CBR_g54185' => 'cbr', 'CBR_g54190' => 'cbr', 'Cc02_g11020' => 'ccan', 'Cc02_g23920' => 'ccan', 'Cc02_g39860' => 'ccan', 'Cc02_g39870' => 'ccan', 'Cc03_g06760' => 'ccan', 'Cc06_g02450' => 'ccan', 'Cc09_g09450' => 'ccan', 'CDE02G1959' => 'cde', 'CDE04G0600' => 'cde', 'CDE07G1996' => 'cde', 'CDE07G2078' => 'cde', 'CDE11G0611' => 'cde', 'Cfa001683' => 'cfa', 'Cfa001734' => 'cfa', 'Cfa001737' => 'cfa', 'Cfa003751' => 'cfa', 'Cfa012019' => 'cfa', 'Cfa017353' => 'cfa', 'Cfa017732' => 'cfa', 'Cfa022464' => 'cfa', 'Ciclev10012400m.g' => 'ccl', 'Ciclev10021242m.g' => 'ccl', 'Ciclev10021302m.g' => 'ccl', 'Ciclev10021463m.g' => 'ccl', 'Ciclev10032359m.g' => 'ccl', 'CiPaw.01G081000' => 'cil', 'CiPaw.01G262500' => 'cil', 'CiPaw.01G269800' => 'cil', 'CiPaw.02G168400' => 'cil', 'CiPaw.05G119500' => 'cil', 'CiPaw.11G147300' => 'cil', 'ClCG01G003630' => 'cla', 'ClCG05G000510' => 'cla', 'ClCG05G002300' => 'cla', 'ClCG08G007650' => 'cla', 'ClCG10G021250' => 'cla', 'COL.COLO4_06218' => 'col', 'COL.COLO4_12538' => 'col', 'COL.COLO4_14775' => 'col', 'COL.COLO4_23875' => 'col', 'Cpa.g.sc141.16' => 'cpa', 'Cpa.g.sc169.16' => 'cpa', 'Cpa.g.sc244.4' => 'cpa', 'Cpa.g.sc244.5' => 'cpa', 'Cpa.g.sc29.87' => 'cpa', 'Cpa.g.sc53.115' => 'cpa', 'Cre03.g207502' => 'cre', 'Cre06.g277000' => 'cre', 'Cre09.g394050' => 'cre', 'CsaV3_3G007680' => 'csa', 'CsaV3_3G009710' => 'csa', 'CsaV3_3G034790' => 'csa', 'CsaV3_5G003750' => 'csa', 'CsaV3_6G036620' => 'csa', 'CSS0002288' => 'camsi', 'CSS0011250' => 'camsi', 'CSS0021619' => 'camsi', 'CSS0046701' => 'camsi', 'DCAR_006420' => 'dca', 'DCAR_006865' => 'dca', 'DCAR_008558' => 'dca', 'DCAR_028754' => 'dca', 'DCAR_028755' => 'dca', 'Dinv31218' => 'din', 'Dinv32371' => 'din', 'Dinv34250' => 'din', 'Dinv37156' => 'din', 'Dinv43704' => 'din', 'Duzib093G1811' => 'dzi', 'Duzib106G1622' => 'dzi', 'Duzib114G0504' => 'dzi', 'Duzib128G0338' => 'dzi', 'Duzib128G1577' => 'dzi', 'Duzib133G0104' => 'dzi', 'Duzib133G1080' => 'dzi', 'Duzib138G0324' => 'dzi', 'Duzib138G0394' => 'dzi', 'Duzib205G0122' => 'dzi', 'Duzib268G1020' => 'dzi', 'Duzib268G1359' => 'dzi', 'ECA232G3929' => 'eca', 'ECA236G2210' => 'eca', 'ECA236G2287' => 'eca', 'ECA240G4568' => 'eca', 'ECA247G0894' => 'eca', 'EL10Ac1g00200' => 'bvu', 'EL10Ac1g00886' => 'bvu', 'EL10As1g23091' => 'bvu', 'EL10As1g23092' => 'bvu', 'Eucgr.A01284' => 'egr', 'Eucgr.A01285' => 'egr', 'Eucgr.D02456' => 'egr', 'Eucgr.E00018' => 'egr', 'Eucgr.E01439' => 'egr', 'Eucgr.G02859' => 'egr', 'FAN01G0168' => 'fan', 'FAN01G0453' => 'fan', 'FAN01G2761' => 'fan', 'FAN02G1239' => 'fan', 'FAN03G0645' => 'fan', 'FAN03G2707' => 'fan', 'FAN03G2978' => 'fan', 'FAN04G0227' => 'fan', 'FAN06G0091' => 'fan', 'FAN06G1418' => 'fan', 'FAN06G1512' => 'fan', 'FAN06G1986' => 'fan', 'FAN06G2905' => 'fan', 'FAN06G4325' => 'fan', 'FAN08G0033' => 'fan', 'FAN09G0642' => 'fan', 'FAN10G1763' => 'fan', 'FAN10G2026' => 'fan', 'FAN10G2513' => 'fan', 'FAN10G3402' => 'fan', 'FAN10G3564' => 'fan', 'FAN10G3987' => 'fan', 'FAN13G1490' => 'fan', 'FAN14G5857' => 'fan', 'FAN18G1188' => 'fan', 'FvH4_5g00750' => 'fve', 'FvH4_6g13410' => 'fve', 'FvH4_7g11740' => 'fve', 'FvH4_7g17410' => 'fve', 'FvH4_7g18860' => 'fve', 'Glyma.01G099100' => 'gma', 'Glyma.01G142300' => 'gma', 'Glyma.03G025500' => 'gma', 'Glyma.03G069700' => 'gma', 'Glyma.03G260000' => 'gma', 'Glyma.09G269800' => 'gma', 'Glyma.10G208700' => 'gma', 'Glyma.18G220400' => 'gma', 'Glyma.20G182000' => 'gma', 'Gohir.A01G221726' => 'ghi', 'Gohir.A07G134600' => 'ghi', 'Gohir.A07G146000' => 'ghi', 'Gohir.A08G173900' => 'ghi', 'Gohir.A09G194900' => 'ghi', 'Gohir.A10G204100' => 'ghi', 'Gohir.A11G080600' => 'ghi', 'Gohir.A11G327500' => 'ghi', 'Gohir.A12G101800' => 'ghi', 'Gohir.D01G211200' => 'ghi', 'Gohir.D07G139200' => 'ghi', 'Gohir.D07G152100' => 'ghi', 'Gohir.D08G192600' => 'ghi', 'Gohir.D09G189200' => 'ghi', 'Gohir.D10G212000' => 'ghi', 'Gohir.D11G085200' => 'ghi', 'Gohir.D11G346400' => 'ghi', 'Gohir.D12G104800' => 'ghi', 'Gorai.001G151300' => 'gra', 'Gorai.001G174100' => 'gra', 'Gorai.002G257000' => 'gra', 'Gorai.004G202600' => 'gra', 'Gorai.007G090900' => 'gra', 'Gorai.007G376700' => 'gra', 'Gorai.008G114100' => 'gra', 'Gorai.011G237900' => 'gra', 'GSVIVG01005450001' => 'vvi', 'GSVIVG01016232001' => 'vvi', 'GSVIVG01026157001' => 'vvi', 'GSVIVG01027419001' => 'vvi', 'GSVIVG01027631001' => 'vvi', 'GSVIVG01034143001' => 'vvi', 'HanXRQChr03g0093921' => 'han', 'HanXRQChr04g0120001' => 'han', 'HanXRQChr04g0122561' => 'han', 'HanXRQChr09g0246851' => 'han', 'HanXRQChr10g0293311' => 'han', 'HanXRQChr13g0425231' => 'han', 'HanXRQChr16g0532571' => 'han', 'Haze_09050' => 'cav', 'Haze_15715' => 'cav', 'Haze_15716' => 'cav', 'Haze_16803' => 'cav', 'Haze_16850' => 'cav', 'Hma1.2p1_0301F.1_g118655' => 'hma', 'Hma1.2p1_0309F.1_g120590' => 'hma', 'Hma1.2p1_0936F.1_g238900' => 'hma', 'Hma1.2p1_3552F.1_g336740' => 'hma', 'HPP92_003520' => 'vpl', 'HPP92_006628' => 'vpl', 'HPP92_006645' => 'vpl', 'HPP92_014669' => 'vpl', 'HPP92_015077' => 'vpl', 'Hund16742' => 'sun', 'Hund17022' => 'sun', 'Lalb_Chr02g0152131' => 'lal', 'Lalb_Chr05g0225371' => 'lal', 'Lalb_Chr07g0189841' => 'lal', 'Lalb_Chr07g0192961' => 'lal', 'Lalb_Chr12g0208221' => 'lal', 'Lalb_Chr13g0291211' => 'lal', 'Lalb_Chr13g0291781' => 'lal', 'Lalb_Chr18g0044651' => 'lal', 'Lalb_Chr21g0313731' => 'lal', 'Lj1g0022533' => 'lja', 'Lj2A18T50' => 'lonja', 'Lj2A92G93' => 'lonja', 'Lj3A965T73' => 'lonja', 'Lj3g0000673' => 'lja', 'Lj3g0002666' => 'lja', 'Lj4g0016985' => 'lja', 'Lj5g0003625' => 'lja', 'Lj7A529G36' => 'lonja', 'Lj9A569T49' => 'lonja', 'Lj9A604T63' => 'lonja', 'Lsat_1_v5_gn_3_132060' => 'lsa', 'Lsat_1_v5_gn_4_68941' => 'lsa', 'Lsat_1_v5_gn_5_95580' => 'lsa', 'Lsat_1_v5_gn_7_161' => 'lsa', 'Lsat_1_v5_gn_7_7041' => 'lsa', 'Lsat_1_v5_gn_9_33481' => 'lsa', 'Lsat_1_v5_gn_9_68260' => 'lsa', 'Manes.01G073100' => 'mes', 'Manes.01G266300' => 'mes', 'Manes.02G033300' => 'mes', 'Manes.05G017900' => 'mes', 'Manes.05G046100' => 'mes', 'Manes.08G080900' => 'mes', 'Manes.10G049400' => 'mes', 'Mapoly0009s0186' => 'mpo', 'Mapoly0036s0118' => 'mpo', 'Mapoly0101s0046' => 'mpo', 'MBI04_g30218_MAGBIO' => 'mbi', 'MBI04_g35564_MAGBIO' => 'mbi', 'MBI12_g34011_MAGBIO' => 'mbi', 'MBI14_g04655_MAGBIO' => 'mbi', 'MCO07G653' => 'mco', 'MCO10G173' => 'mco', 'MD01G1087100' => 'mdo', 'MD01G1104200' => 'mdo', 'MD02G1205100' => 'mdo', 'MD04G1079200' => 'mdo', 'MD04G1131400' => 'mdo', 'MD07G1121600' => 'mdo', 'MD07G1157300' => 'mdo', 'MD07G1171000' => 'mdo', 'MD12G1144500' => 'mdo', 'Medtr1g094610' => 'mtr', 'Medtr4g021795' => 'mtr', 'Medtr4g023760' => 'mtr', 'Medtr7g118050' => 'mtr', 'MELO3C005582.2' => 'cme', 'MELO3C005989.2' => 'cme', 'MELO3C006192.2' => 'cme', 'MELO3C009248.2' => 'cme', 'MELO3C019817.2' => 'cme', 'Migut.B01625' => 'egut', 'Migut.B01915' => 'egut', 'Migut.F01721' => 'egut', 'Migut.J00314' => 'egut', 'MSTRG.20742' => 'ama', 'MSTRG.8134' => 'ama', 'Nitab4.5_0000096g0010' => 'nta', 'Nitab4.5_0000202g0030' => 'nta', 'Nitab4.5_0000216g0370' => 'nta', 'Nitab4.5_0000457g0230' => 'nta', 'Nitab4.5_0001702g0170' => 'nta', 'Nitab4.5_0003607g0010' => 'nta', 'Nitab4.5_0004917g0020' => 'nta', 'Nitab4.5_0007059g0010' => 'nta', 'Nitab4.5_0007184g0010' => 'nta', 'Nitab4.5_0007346g0020' => 'nta', 'Nn1g00410' => 'nnu', 'Nn1g01252' => 'nnu', 'Nn2g11168' => 'nnu', 'Nn2g13403' => 'nnu', 'Nn2g13760' => 'nnu', 'Nn4g26380' => 'nnu', 'Oeu000806.2' => 'oeu', 'Oeu005788.1' => 'oeu', 'Oeu006900.3' => 'oeu', 'Oeu007797.1' => 'oeu', 'Oeu011932.1' => 'oeu', 'Oeu022739.1' => 'oeu', 'Oeu037918.1' => 'oeu', 'Oeu055490.2' => 'oeu', 'Os01g0844400' => 'osa', 'Os02g0819100' => 'osa', 'Os03g0804300' => 'osa', 'Os05g0458000' => 'osa', 'Os07g0467800' => 'osa', 'Os12g0602200' => 'osa', 'Peaxi162Scf00013g03444' => 'pax', 'Peaxi162Scf00094g01120' => 'pax', 'Peaxi162Scf00191g01211' => 'pax', 'Peaxi162Scf00238g01110' => 'pax', 'Peaxi162Scf00330g00719' => 'pax', 'Peaxi162Scf00627g00018' => 'pax', 'PGR031G2686' => 'pgr', 'PGR042G0809' => 'pgr', 'PGR142G0193' => 'pgr', 'PGSC0003DMG400011066' => 'stu', 'PGSC0003DMG400012041' => 'stu', 'PGSC0003DMG400013678' => 'stu', 'PGSC0003DMG400023477' => 'stu', 'PGSC0003DMG400025956' => 'stu', 'PGSC0003DMG401019151' => 'stu', 'Phvul.006G116400' => 'pvu', 'Phvul.007G097300' => 'pvu', 'Phvul.010G015000' => 'pvu', 'Phvul.010G083900' => 'pvu', 'Potri.001G117100' => 'ptr', 'Potri.002G147300' => 'ptr', 'Potri.003G115600' => 'ptr', 'Potri.006G087400' => 'ptr', 'Potri.010G226100' => 'ptr', 'Potri.014G069200' => 'ptr', 'Potri.014G104000' => 'ptr', 'Potri.016G100200' => 'ptr', 'Pp3c10_20450' => 'ppa', 'Pp3c1_42400' => 'ppa', 'Pp3c3_24390' => 'ppa', 'Pp3c3_2860' => 'ppa', 'PRCOL_00003193' => 'pco', 'Prupe.2G144500' => 'ppe', 'Prupe.2G195700' => 'ppe', 'Prupe.2G209800' => 'ppe', 'Prupe.5G080000' => 'ppe', 'Prupe.6G257900' => 'ppe', 'Psat3g001160' => 'psa', 'Psat6g181880' => 'psa', 'Psat7g233720' => 'psa', 'PSO063G7587' => 'pso', 'PSO339G2145' => 'pso', 'PSO339G3369' => 'pso', 'PSO478G2747' => 'pso', 'PSO513G0140' => 'pso', 'PSO782G1614' => 'pso', 'PSO782G4889' => 'pso', 'PSO782G5485' => 'pso', 'PSO801G0241' => 'pso', 'QL07p048854' => 'qlo', 'QL08p046745' => 'qlo', 'QL08p052606' => 'qlo', 'QL08p053414' => 'qlo', 'QL08p054868' => 'qlo', 'RcHm_v2.0_Chr1g0350251' => 'rch', 'RcHm_v2.0_Chr1g0360851' => 'rch', 'RcHm_v2.0_Chr1g0362791' => 'rch', 'RcHm_v2.0_Chr3g0466281' => 'rch', 'RcHm_v2.0_Chr7g0201481' => 'rch', 'Rhsim01G0148600' => 'rsi', 'Rhsim05G0194400' => 'rsi', 'Rhsim07G0000700' => 'rsi', 'Rhsim07G0000800' => 'rsi', 'Rhsim07G0027900' => 'rsi', 'Rhsim09G0149500' => 'rsi', 'RhsimUnG0186900' => 'rsi', 'Sabra01G0089900' => 'sbr', 'Sabra02G0114700' => 'sbr', 'Sabra02G0116300' => 'sbr', 'Sabra03G0080100' => 'sbr', 'Sabra08G0024300' => 'sbr', 'Sabra10G0174300' => 'sbr', 'Sabra14G0048900' => 'sbr', 'Sabra14G0076500' => 'sbr', 'SalBow5G2513' => 'sbo', 'Sc01g0002300' => 'sci', 'Sc01g0004450' => 'sci', 'Sc06g0001680' => 'sci', 'Sc23g0003580' => 'sci', 'Sed0000913' => 'sed', 'Sed0001655' => 'sed', 'Sed0007745' => 'sed', 'Sed0010951' => 'sed', 'Sed0017599' => 'sed', 'Sed0021405' => 'sed', 'Sed0022810' => 'sed', 'SEGI_07099' => 'sgi', 'SEGI_11931' => 'sgi', 'SEGI_13187' => 'sgi', 'SEGI_29958' => 'sgi', 'SEGI_36351' => 'sgi', 'SGA_v2.0_scaffold126G33770' => 'sas', 'SGA_v2.0_scaffold153G37003' => 'sas', 'SGA_v2.0_scaffold2G01359' => 'sas', 'SGA_v2.0_scaffold5G03064' => 'sas', 'SGA_v2.0_scaffold95G28903' => 'sas', 'SHI12701' => 'shi', 'SHI26410' => 'shi', 'SHI38997' => 'shi', 'SHI53759' => 'shi', 'SHI53886' => 'shi', 'SHI54714' => 'shi', 'SMO011G0041' => 'smo', 'SMO146G0251' => 'smo', 'SMO160G0004' => 'smo', 'SMO174G0057' => 'smo', 'SMO244G0089' => 'smo', 'SMO296G0011' => 'smo', 'Solyc01g091280.3' => 'sly', 'Solyc05g047610.3' => 'sly', 'Solyc05g047640.3' => 'sly', 'Solyc05g055630.3' => 'sly', 'Solyc10g018160.2' => 'sly', 'Solyc10g084820.2' => 'sly', 'Solyc10g086565.2' => 'sly', 'Sopen01g037030' => 'spe', 'Sopen05g027920' => 'spe', 'Sopen05g034070' => 'spe', 'Sopen10g007260' => 'spe', 'Sopen10g034260' => 'spe', 'Sopen10g035950' => 'spe', 'Sp3g07710' => 'spa', 'Sp4g27420' => 'spa', 'Sp5g02450' => 'spa', 'Sp6g01280' => 'spa', 'Sp6g38480' => 'spa', 'Sp7g20780' => 'spa', 'TAR374G1413' => 'tar', 'TAR623G1777' => 'tar', 'TAR629G2370' => 'tar', 'TAR633G1759' => 'tar', 'TAR636G3387' => 'tar', 'THA.LOC104802447' => 'tha', 'THA.LOC104813916' => 'tha', 'THA.LOC104816423' => 'tha', 'THA.LOC104817246' => 'tha', 'THA.LOC104825895' => 'tha', 'Thecc.01G335200' => 'tca', 'Thecc.01G377400' => 'tca', 'Thecc.03G262200' => 'tca', 'Thecc.05G036800' => 'tca', 'Thecc.10G080500' => 'tca', 'Thecc.10G080800' => 'tca', 'Thhalv10001560m.g' => 'esa', 'Thhalv10006120m.g' => 'esa', 'Thhalv10014375m.g' => 'esa', 'Thhalv10021264m.g' => 'esa', 'Thhalv10028856m.g' => 'esa', 'TPR.G1914' => 'tpr', 'TPR.G4757' => 'tpr', 'TPR.G5595' => 'tpr', 'TWI14G0952' => 'twi', 'TWI14G1307' => 'twi', 'TWI38G2143' => 'twi', 'TWI59G0826' => 'twi', 'TWI77G0527' => 'twi', 'TWI81G0150' => 'twi', 'unitig_21.g21018' => 'ugi', 'unitig_26.g9725' => 'ugi', 'unitig_744.g24653' => 'ugi', 'unitig_749.g13778' => 'ugi', 'unitig_899.g15035' => 'ugi', 'vmacro04296' => 'vma', 'vmacro04852' => 'vma', 'vmacro13404' => 'vma', 'vmacro20169' => 'vma', 'vmacro21014' => 'vma', 'VMungo0331G0237' => 'vmu', 'VMungo0331G0706' => 'vmu', 'VMungo0331G1361' => 'vmu', 'VMungo0331G1489' => 'vmu', 'VMungo0540G1037' => 'vmu', 'VMungo0720G2487' => 'vmu', 'VMungo0720G2721' => 'vmu', 'Zm00001eb086860' => 'zma', 'Zm00001eb104760' => 'zma', 'Zm00001eb148220' => 'zma', 'Zm00001eb259030' => 'zma', 'Zm00001eb289590' => 'zma', 'Zm00001eb420150' => 'zma' ), 'gf_id' => 'HOM05D000968', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000968' ), 'data_identifier' => 'HOM05D000968', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000968', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p31690' => 'bna', 'A03p36040' => 'bna', 'A03p53730' => 'bna', 'A04p01410' => 'bna', 'A05p05420' => 'bna', 'A05p39630' => 'bna', 'A05p39640' => 'bna', 'A09p00970' => 'bna', 'A09p53060' => 'bna', 'A10p31890' => 'bna', 'Aa31LG10G15040' => 'aar', 'Aa31LG1G21090' => 'aar', 'Aa31LG1G26900' => 'aar', 'Aa31LG3G1820' => 'aar', 'Aa31LG5G1100' => 'aar', 'Aa31LG6G4740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2265' => 'aag', 'Actinidia07998' => 'ach', 'Actinidia11266' => 'ach', 'Actinidia12682' => 'ach', 'Actinidia26479' => 'ach', 'Actinidia31406' => 'ach', 'Actinidia32437' => 'ach', 'Actinidia38862' => 'ach', 'Ah.05g174230' => 'amhyb', 'Ah.05g179070' => 'amhyb', 'Ah.05g179090' => 'amhyb', 'Ah.12g059950' => 'amhyb', 'AL3G20480' => 'aly', 'AL4G44520' => 'aly', 'AL5G43110' => 'aly', 'AL6G13890' => 'aly', 'AL6G52620' => 'aly', 'AL7G30830' => 'aly', 'Aqoxy1G00899' => 'aox', 'Aqoxy5G04333' => 'aox', 'Aqoxy7G00641' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3IZ0NN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4EF6AW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W9P8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79GA3M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C43NQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFCU6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G95YVJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCHK29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LU1UG8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX91RN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGB4B1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8DA0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9H7JI' => 'arhy', 'AT3G09320' => 'ath', 'AT3G60800' => 'ath', 'AT4G00840' => 'ath', 'AT4G22750' => 'ath', 'AT5G04270' => 'ath', 'ATR0090G003' => 'atr', 'ATR0559G349' => 'atr', 'ATR0680G261' => 'atr', 'ATR0810G048' => 'atr', 'Atru.chr12.831' => 'acertr', 'Atru.chr5.303' => 'acertr', 'Atru.chr5.748' => 'acertr', 'Atru.chr8.1999' => 'acertr', 'Atru.chr9.1436' => 'acertr', 'AUR62004211' => 'cqu', 'AUR62004548' => 'cqu', 'AUR62013637' => 'cqu', 'AUR62022662' => 'cqu', 'AUR62025777' => 'cqu', 'AUR62042386' => 'cqu', 'BcaB01g02310' => 'bca', 'BcaB01g06062' => 'bca', 'BcaB02g08975' => 'bca', 'BcaB02g08980' => 'bca', 'BcaC01g04228' => 'bca', 'BcaC01g06830' => 'bca', 'BcaC02g10186' => 'bca', 'BcaC02g12214' => 'bca', 'BcaC04g24101' => 'bca', 'BcaC05g29520' => 'bca', 'BcaC05g29661' => 'bca', 'BcaC06g32130' => 'bca', 'BcaC06g32131' => 'bca', 'BcaC07g40601' => 'bca', 'BcaC07g42641' => 'bca', 'BcaNung01038' => 'bca', 'BcaNung01676' => 'bca', 'BcaNung02480' => 'bca', 'BcaNung07376' => 'bca', 'BolC3t16146H' => 'bol', 'BolC3t16637H' => 'bol', 'BolC4t22257H' => 'bol', 'BolC4t24728H' => 'bol', 'BolC5t34517H' => 'bol', 'BolC7t45703H' => 'bol', 'BolC8t51166H' => 'bol', 'BolC9t53038H' => 'bol', 'BolC9t60000H' => 'bol', 'BraA01t01345Z' => 'bra', 'BraA01t01346Z' => 'bra', 'BraA01t01348Z' => 'bra', 'BraA03t12347Z' => 'bra', 'BraA03t12775Z' => 'bra', 'BraA03t14439Z' => 'bra', 'BraA04t15860Z' => 'bra', 'BraA05t19511Z' => 'bra', 'BraA05t22746Z' => 'bra', 'BraA09t35767Z' => 'bra', 'BraA09t40732Z' => 'bra', 'BraA10t45233Z' => 'bra', 'C03p38720' => 'bna', 'C03p43680' => 'bna', 'C04p06350' => 'bna', 'C04p31800' => 'bna', 'C05p58680' => 'bna', 'C07p52110' => 'bna', 'C08p35760' => 'bna', 'C09p01050' => 'bna', 'C09p72600' => 'bna', 'CAN.G106.2' => 'can', 'CAN.G1482.1' => 'can', 'CAN.G324.12' => 'can', 'CAN.G388.20' => 'can', 'CAN.G412.7' => 'can', 'CAN.G694.32' => 'can', 'CAN.G92.12' => 'can', 'CANSAT11G2353' => 'cansat', 'CANSAT21G1398' => 'cansat', 'CANSAT56G2456' => 'cansat', 'CANSAT56G3031' => 'cansat', 'CANSAT56G4539' => 'cansat', 'CARHR083680' => 'chi', 'CARHR171190' => 'chi', 'CARHR209010' => 'chi', 'CARHR229680' => 'chi', 'CARHR249490' => 'chi', 'Carub.0003s0844' => 'cru', 'Carub.0005s2755' => 'cru', 'Carub.0006s0322' => 'cru', 'Carub.0006s3586' => 'cru', 'Carub.0007s1855' => 'cru', 'Ca_07808_v3' => 'car', 'Ca_09535_v3' => 'car', 'Ca_10548_v3' => 'car', 'Ca_19913_v3' => 'car', 'Ca_19916_v3' => 'car', 'Ca_19975_v3' => 'car', 'CBR_g22876' => 'cbr', 'CBR_g22879' => 'cbr', 'CBR_g38491' => 'cbr', 'CBR_g54185' => 'cbr', 'CBR_g54190' => 'cbr', 'Cc02_g11020' => 'ccan', 'Cc02_g23920' => 'ccan', 'Cc02_g39860' => 'ccan', 'Cc02_g39870' => 'ccan', 'Cc03_g06760' => 'ccan', 'Cc06_g02450' => 'ccan', 'Cc09_g09450' => 'ccan', 'CDE02G1959' => 'cde', 'CDE04G0600' => 'cde', 'CDE07G1996' => 'cde', 'CDE07G2078' => 'cde', 'CDE11G0611' => 'cde', 'Cfa001683' => 'cfa', 'Cfa001734' => 'cfa', 'Cfa001737' => 'cfa', 'Cfa003751' => 'cfa', 'Cfa012019' => 'cfa', 'Cfa017353' => 'cfa', 'Cfa017732' => 'cfa', 'Cfa022464' => 'cfa', 'Ciclev10012400m.g' => 'ccl', 'Ciclev10021242m.g' => 'ccl', 'Ciclev10021302m.g' => 'ccl', 'Ciclev10021463m.g' => 'ccl', 'Ciclev10032359m.g' => 'ccl', 'CiPaw.01G081000' => 'cil', 'CiPaw.01G262500' => 'cil', 'CiPaw.01G269800' => 'cil', 'CiPaw.02G168400' => 'cil', 'CiPaw.05G119500' => 'cil', 'CiPaw.11G147300' => 'cil', 'ClCG01G003630' => 'cla', 'ClCG05G000510' => 'cla', 'ClCG05G002300' => 'cla', 'ClCG08G007650' => 'cla', 'ClCG10G021250' => 'cla', 'COL.COLO4_06218' => 'col', 'COL.COLO4_12538' => 'col', 'COL.COLO4_14775' => 'col', 'COL.COLO4_23875' => 'col', 'Cpa.g.sc141.16' => 'cpa', 'Cpa.g.sc169.16' => 'cpa', 'Cpa.g.sc244.4' => 'cpa', 'Cpa.g.sc244.5' => 'cpa', 'Cpa.g.sc29.87' => 'cpa', 'Cpa.g.sc53.115' => 'cpa', 'Cre03.g207502' => 'cre', 'Cre06.g277000' => 'cre', 'Cre09.g394050' => 'cre', 'CsaV3_3G007680' => 'csa', 'CsaV3_3G009710' => 'csa', 'CsaV3_3G034790' => 'csa', 'CsaV3_5G003750' => 'csa', 'CsaV3_6G036620' => 'csa', 'CSS0002288' => 'camsi', 'CSS0011250' => 'camsi', 'CSS0021619' => 'camsi', 'CSS0046701' => 'camsi', 'DCAR_006420' => 'dca', 'DCAR_006865' => 'dca', 'DCAR_008558' => 'dca', 'DCAR_028754' => 'dca', 'DCAR_028755' => 'dca', 'Dinv31218' => 'din', 'Dinv32371' => 'din', 'Dinv34250' => 'din', 'Dinv37156' => 'din', 'Dinv43704' => 'din', 'Duzib093G1811' => 'dzi', 'Duzib106G1622' => 'dzi', 'Duzib114G0504' => 'dzi', 'Duzib128G0338' => 'dzi', 'Duzib128G1577' => 'dzi', 'Duzib133G0104' => 'dzi', 'Duzib133G1080' => 'dzi', 'Duzib138G0324' => 'dzi', 'Duzib138G0394' => 'dzi', 'Duzib205G0122' => 'dzi', 'Duzib268G1020' => 'dzi', 'Duzib268G1359' => 'dzi', 'ECA232G3929' => 'eca', 'ECA236G2210' => 'eca', 'ECA236G2287' => 'eca', 'ECA240G4568' => 'eca', 'ECA247G0894' => 'eca', 'EL10Ac1g00200' => 'bvu', 'EL10Ac1g00886' => 'bvu', 'EL10As1g23091' => 'bvu', 'EL10As1g23092' => 'bvu', 'Eucgr.A01284' => 'egr', 'Eucgr.A01285' => 'egr', 'Eucgr.D02456' => 'egr', 'Eucgr.E00018' => 'egr', 'Eucgr.E01439' => 'egr', 'Eucgr.G02859' => 'egr', 'FAN01G0168' => 'fan', 'FAN01G0453' => 'fan', 'FAN01G2761' => 'fan', 'FAN02G1239' => 'fan', 'FAN03G0645' => 'fan', 'FAN03G2707' => 'fan', 'FAN03G2978' => 'fan', 'FAN04G0227' => 'fan', 'FAN06G0091' => 'fan', 'FAN06G1418' => 'fan', 'FAN06G1512' => 'fan', 'FAN06G1986' => 'fan', 'FAN06G2905' => 'fan', 'FAN06G4325' => 'fan', 'FAN08G0033' => 'fan', 'FAN09G0642' => 'fan', 'FAN10G1763' => 'fan', 'FAN10G2026' => 'fan', 'FAN10G2513' => 'fan', 'FAN10G3402' => 'fan', 'FAN10G3564' => 'fan', 'FAN10G3987' => 'fan', 'FAN13G1490' => 'fan', 'FAN14G5857' => 'fan', 'FAN18G1188' => 'fan', 'FvH4_5g00750' => 'fve', 'FvH4_6g13410' => 'fve', 'FvH4_7g11740' => 'fve', 'FvH4_7g17410' => 'fve', 'FvH4_7g18860' => 'fve', 'Glyma.01G099100' => 'gma', 'Glyma.01G142300' => 'gma', 'Glyma.03G025500' => 'gma', 'Glyma.03G069700' => 'gma', 'Glyma.03G260000' => 'gma', 'Glyma.09G269800' => 'gma', 'Glyma.10G208700' => 'gma', 'Glyma.18G220400' => 'gma', 'Glyma.20G182000' => 'gma', 'Gohir.A01G221726' => 'ghi', 'Gohir.A07G134600' => 'ghi', 'Gohir.A07G146000' => 'ghi', 'Gohir.A08G173900' => 'ghi', 'Gohir.A09G194900' => 'ghi', 'Gohir.A10G204100' => 'ghi', 'Gohir.A11G080600' => 'ghi', 'Gohir.A11G327500' => 'ghi', 'Gohir.A12G101800' => 'ghi', 'Gohir.D01G211200' => 'ghi', 'Gohir.D07G139200' => 'ghi', 'Gohir.D07G152100' => 'ghi', 'Gohir.D08G192600' => 'ghi', 'Gohir.D09G189200' => 'ghi', 'Gohir.D10G212000' => 'ghi', 'Gohir.D11G085200' => 'ghi', 'Gohir.D11G346400' => 'ghi', 'Gohir.D12G104800' => 'ghi', 'Gorai.001G151300' => 'gra', 'Gorai.001G174100' => 'gra', 'Gorai.002G257000' => 'gra', 'Gorai.004G202600' => 'gra', 'Gorai.007G090900' => 'gra', 'Gorai.007G376700' => 'gra', 'Gorai.008G114100' => 'gra', 'Gorai.011G237900' => 'gra', 'GSVIVG01005450001' => 'vvi', 'GSVIVG01016232001' => 'vvi', 'GSVIVG01026157001' => 'vvi', 'GSVIVG01027419001' => 'vvi', 'GSVIVG01027631001' => 'vvi', 'GSVIVG01034143001' => 'vvi', 'HanXRQChr03g0093921' => 'han', 'HanXRQChr04g0120001' => 'han', 'HanXRQChr04g0122561' => 'han', 'HanXRQChr09g0246851' => 'han', 'HanXRQChr10g0293311' => 'han', 'HanXRQChr13g0425231' => 'han', 'HanXRQChr16g0532571' => 'han', 'Haze_09050' => 'cav', 'Haze_15715' => 'cav', 'Haze_15716' => 'cav', 'Haze_16803' => 'cav', 'Haze_16850' => 'cav', 'Hma1.2p1_0301F.1_g118655' => 'hma', 'Hma1.2p1_0309F.1_g120590' => 'hma', 'Hma1.2p1_0936F.1_g238900' => 'hma', 'Hma1.2p1_3552F.1_g336740' => 'hma', 'HPP92_003520' => 'vpl', 'HPP92_006628' => 'vpl', 'HPP92_006645' => 'vpl', 'HPP92_014669' => 'vpl', 'HPP92_015077' => 'vpl', 'Hund16742' => 'sun', 'Hund17022' => 'sun', 'Lalb_Chr02g0152131' => 'lal', 'Lalb_Chr05g0225371' => 'lal', 'Lalb_Chr07g0189841' => 'lal', 'Lalb_Chr07g0192961' => 'lal', 'Lalb_Chr12g0208221' => 'lal', 'Lalb_Chr13g0291211' => 'lal', 'Lalb_Chr13g0291781' => 'lal', 'Lalb_Chr18g0044651' => 'lal', 'Lalb_Chr21g0313731' => 'lal', 'Lj1g0022533' => 'lja', 'Lj2A18T50' => 'lonja', 'Lj2A92G93' => 'lonja', 'Lj3A965T73' => 'lonja', 'Lj3g0000673' => 'lja', 'Lj3g0002666' => 'lja', 'Lj4g0016985' => 'lja', 'Lj5g0003625' => 'lja', 'Lj7A529G36' => 'lonja', 'Lj9A569T49' => 'lonja', 'Lj9A604T63' => 'lonja', 'Lsat_1_v5_gn_3_132060' => 'lsa', 'Lsat_1_v5_gn_4_68941' => 'lsa', 'Lsat_1_v5_gn_5_95580' => 'lsa', 'Lsat_1_v5_gn_7_161' => 'lsa', 'Lsat_1_v5_gn_7_7041' => 'lsa', 'Lsat_1_v5_gn_9_33481' => 'lsa', 'Lsat_1_v5_gn_9_68260' => 'lsa', 'Manes.01G073100' => 'mes', 'Manes.01G266300' => 'mes', 'Manes.02G033300' => 'mes', 'Manes.05G017900' => 'mes', 'Manes.05G046100' => 'mes', 'Manes.08G080900' => 'mes', 'Manes.10G049400' => 'mes', 'Mapoly0009s0186' => 'mpo', 'Mapoly0036s0118' => 'mpo', 'Mapoly0101s0046' => 'mpo', 'MBI04_g30218_MAGBIO' => 'mbi', 'MBI04_g35564_MAGBIO' => 'mbi', 'MBI12_g34011_MAGBIO' => 'mbi', 'MBI14_g04655_MAGBIO' => 'mbi', 'MCO07G653' => 'mco', 'MCO10G173' => 'mco', 'MD01G1087100' => 'mdo', 'MD01G1104200' => 'mdo', 'MD02G1205100' => 'mdo', 'MD04G1079200' => 'mdo', 'MD04G1131400' => 'mdo', 'MD07G1121600' => 'mdo', 'MD07G1157300' => 'mdo', 'MD07G1171000' => 'mdo', 'MD12G1144500' => 'mdo', 'Medtr1g094610' => 'mtr', 'Medtr4g021795' => 'mtr', 'Medtr4g023760' => 'mtr', 'Medtr7g118050' => 'mtr', 'MELO3C005582.2' => 'cme', 'MELO3C005989.2' => 'cme', 'MELO3C006192.2' => 'cme', 'MELO3C009248.2' => 'cme', 'MELO3C019817.2' => 'cme', 'Migut.B01625' => 'egut', 'Migut.B01915' => 'egut', 'Migut.F01721' => 'egut', 'Migut.J00314' => 'egut', 'MSTRG.20742' => 'ama', 'MSTRG.8134' => 'ama', 'Nitab4.5_0000096g0010' => 'nta', 'Nitab4.5_0000202g0030' => 'nta', 'Nitab4.5_0000216g0370' => 'nta', 'Nitab4.5_0000457g0230' => 'nta', 'Nitab4.5_0001702g0170' => 'nta', 'Nitab4.5_0003607g0010' => 'nta', 'Nitab4.5_0004917g0020' => 'nta', 'Nitab4.5_0007059g0010' => 'nta', 'Nitab4.5_0007184g0010' => 'nta', 'Nitab4.5_0007346g0020' => 'nta', 'Nn1g00410' => 'nnu', 'Nn1g01252' => 'nnu', 'Nn2g11168' => 'nnu', 'Nn2g13403' => 'nnu', 'Nn2g13760' => 'nnu', 'Nn4g26380' => 'nnu', 'Oeu000806.2' => 'oeu', 'Oeu005788.1' => 'oeu', 'Oeu006900.3' => 'oeu', 'Oeu007797.1' => 'oeu', 'Oeu011932.1' => 'oeu', 'Oeu022739.1' => 'oeu', 'Oeu037918.1' => 'oeu', 'Oeu055490.2' => 'oeu', 'Os01g0844400' => 'osa', 'Os02g0819100' => 'osa', 'Os03g0804300' => 'osa', 'Os05g0458000' => 'osa', 'Os07g0467800' => 'osa', 'Os12g0602200' => 'osa', 'Peaxi162Scf00013g03444' => 'pax', 'Peaxi162Scf00094g01120' => 'pax', 'Peaxi162Scf00191g01211' => 'pax', 'Peaxi162Scf00238g01110' => 'pax', 'Peaxi162Scf00330g00719' => 'pax', 'Peaxi162Scf00627g00018' => 'pax', 'PGR031G2686' => 'pgr', 'PGR042G0809' => 'pgr', 'PGR142G0193' => 'pgr', 'PGSC0003DMG400011066' => 'stu', 'PGSC0003DMG400012041' => 'stu', 'PGSC0003DMG400013678' => 'stu', 'PGSC0003DMG400023477' => 'stu', 'PGSC0003DMG400025956' => 'stu', 'PGSC0003DMG401019151' => 'stu', 'Phvul.006G116400' => 'pvu', 'Phvul.007G097300' => 'pvu', 'Phvul.010G015000' => 'pvu', 'Phvul.010G083900' => 'pvu', 'Potri.001G117100' => 'ptr', 'Potri.002G147300' => 'ptr', 'Potri.003G115600' => 'ptr', 'Potri.006G087400' => 'ptr', 'Potri.010G226100' => 'ptr', 'Potri.014G069200' => 'ptr', 'Potri.014G104000' => 'ptr', 'Potri.016G100200' => 'ptr', 'Pp3c10_20450' => 'ppa', 'Pp3c1_42400' => 'ppa', 'Pp3c3_24390' => 'ppa', 'Pp3c3_2860' => 'ppa', 'PRCOL_00003193' => 'pco', 'Prupe.2G144500' => 'ppe', 'Prupe.2G195700' => 'ppe', 'Prupe.2G209800' => 'ppe', 'Prupe.5G080000' => 'ppe', 'Prupe.6G257900' => 'ppe', 'Psat3g001160' => 'psa', 'Psat6g181880' => 'psa', 'Psat7g233720' => 'psa', 'PSO063G7587' => 'pso', 'PSO339G2145' => 'pso', 'PSO339G3369' => 'pso', 'PSO478G2747' => 'pso', 'PSO513G0140' => 'pso', 'PSO782G1614' => 'pso', 'PSO782G4889' => 'pso', 'PSO782G5485' => 'pso', 'PSO801G0241' => 'pso', 'QL07p048854' => 'qlo', 'QL08p046745' => 'qlo', 'QL08p052606' => 'qlo', 'QL08p053414' => 'qlo', 'QL08p054868' => 'qlo', 'RcHm_v2.0_Chr1g0350251' => 'rch', 'RcHm_v2.0_Chr1g0360851' => 'rch', 'RcHm_v2.0_Chr1g0362791' => 'rch', 'RcHm_v2.0_Chr3g0466281' => 'rch', 'RcHm_v2.0_Chr7g0201481' => 'rch', 'Rhsim01G0148600' => 'rsi', 'Rhsim05G0194400' => 'rsi', 'Rhsim07G0000700' => 'rsi', 'Rhsim07G0000800' => 'rsi', 'Rhsim07G0027900' => 'rsi', 'Rhsim09G0149500' => 'rsi', 'RhsimUnG0186900' => 'rsi', 'Sabra01G0089900' => 'sbr', 'Sabra02G0114700' => 'sbr', 'Sabra02G0116300' => 'sbr', 'Sabra03G0080100' => 'sbr', 'Sabra08G0024300' => 'sbr', 'Sabra10G0174300' => 'sbr', 'Sabra14G0048900' => 'sbr', 'Sabra14G0076500' => 'sbr', 'SalBow5G2513' => 'sbo', 'Sc01g0002300' => 'sci', 'Sc01g0004450' => 'sci', 'Sc06g0001680' => 'sci', 'Sc23g0003580' => 'sci', 'Sed0000913' => 'sed', 'Sed0001655' => 'sed', 'Sed0007745' => 'sed', 'Sed0010951' => 'sed', 'Sed0017599' => 'sed', 'Sed0021405' => 'sed', 'Sed0022810' => 'sed', 'SEGI_07099' => 'sgi', 'SEGI_11931' => 'sgi', 'SEGI_13187' => 'sgi', 'SEGI_29958' => 'sgi', 'SEGI_36351' => 'sgi', 'SGA_v2.0_scaffold126G33770' => 'sas', 'SGA_v2.0_scaffold153G37003' => 'sas', 'SGA_v2.0_scaffold2G01359' => 'sas', 'SGA_v2.0_scaffold5G03064' => 'sas', 'SGA_v2.0_scaffold95G28903' => 'sas', 'SHI12701' => 'shi', 'SHI26410' => 'shi', 'SHI38997' => 'shi', 'SHI53759' => 'shi', 'SHI53886' => 'shi', 'SHI54714' => 'shi', 'SMO011G0041' => 'smo', 'SMO146G0251' => 'smo', 'SMO160G0004' => 'smo', 'SMO174G0057' => 'smo', 'SMO244G0089' => 'smo', 'SMO296G0011' => 'smo', 'Solyc01g091280.3' => 'sly', 'Solyc05g047610.3' => 'sly', 'Solyc05g047640.3' => 'sly', 'Solyc05g055630.3' => 'sly', 'Solyc10g018160.2' => 'sly', 'Solyc10g084820.2' => 'sly', 'Solyc10g086565.2' => 'sly', 'Sopen01g037030' => 'spe', 'Sopen05g027920' => 'spe', 'Sopen05g034070' => 'spe', 'Sopen10g007260' => 'spe', 'Sopen10g034260' => 'spe', 'Sopen10g035950' => 'spe', 'Sp3g07710' => 'spa', 'Sp4g27420' => 'spa', 'Sp5g02450' => 'spa', 'Sp6g01280' => 'spa', 'Sp6g38480' => 'spa', 'Sp7g20780' => 'spa', 'TAR374G1413' => 'tar', 'TAR623G1777' => 'tar', 'TAR629G2370' => 'tar', 'TAR633G1759' => 'tar', 'TAR636G3387' => 'tar', 'THA.LOC104802447' => 'tha', 'THA.LOC104813916' => 'tha', 'THA.LOC104816423' => 'tha', 'THA.LOC104817246' => 'tha', 'THA.LOC104825895' => 'tha', 'Thecc.01G335200' => 'tca', 'Thecc.01G377400' => 'tca', 'Thecc.03G262200' => 'tca', 'Thecc.05G036800' => 'tca', 'Thecc.10G080500' => 'tca', 'Thecc.10G080800' => 'tca', 'Thhalv10001560m.g' => 'esa', 'Thhalv10006120m.g' => 'esa', 'Thhalv10014375m.g' => 'esa', 'Thhalv10021264m.g' => 'esa', 'Thhalv10028856m.g' => 'esa', 'TPR.G1914' => 'tpr', 'TPR.G4757' => 'tpr', 'TPR.G5595' => 'tpr', 'TWI14G0952' => 'twi', 'TWI14G1307' => 'twi', 'TWI38G2143' => 'twi', 'TWI59G0826' => 'twi', 'TWI77G0527' => 'twi', 'TWI81G0150' => 'twi', 'unitig_21.g21018' => 'ugi', 'unitig_26.g9725' => 'ugi', 'unitig_744.g24653' => 'ugi', 'unitig_749.g13778' => 'ugi', 'unitig_899.g15035' => 'ugi', 'vmacro04296' => 'vma', 'vmacro04852' => 'vma', 'vmacro13404' => 'vma', 'vmacro20169' => 'vma', 'vmacro21014' => 'vma', 'VMungo0331G0237' => 'vmu', 'VMungo0331G0706' => 'vmu', 'VMungo0331G1361' => 'vmu', 'VMungo0331G1489' => 'vmu', 'VMungo0540G1037' => 'vmu', 'VMungo0720G2487' => 'vmu', 'VMungo0720G2721' => 'vmu', 'Zm00001eb086860' => 'zma', 'Zm00001eb104760' => 'zma', 'Zm00001eb148220' => 'zma', 'Zm00001eb259030' => 'zma', 'Zm00001eb289590' => 'zma', 'Zm00001eb420150' => 'zma' ) $gf_id = 'HOM05D000968' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000968' ) $data_identifier = 'HOM05D000968' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 19, 'bol' => (int) 9, 'bra' => (int) 12, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 5, 'ccan' => (int) 7, 'cde' => (int) 5, 'cfa' => (int) 8, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 4, 'dca' => (int) 5, 'din' => (int) 5, 'dzi' => (int) 12, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 25, 'fve' => (int) 5, 'gma' => (int) 9, 'ghi' => (int) 18, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 7, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 5, 'sun' => (int) 2, 'lal' => (int) 9, 'lja' => (int) 5, 'lonja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 9, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 2, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 3, 'stu' => (int) 6, 'pvu' => (int) 4, 'ptr' => (int) 8, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 3, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 1, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 5, 'sas' => (int) 5, 'shi' => (int) 6, 'smo' => (int) 6, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 3, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420150' $species_info = array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ) $local_species = 'nta' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000968', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p31690' => 'bna', 'A03p36040' => 'bna', 'A03p53730' => 'bna', 'A04p01410' => 'bna', 'A05p05420' => 'bna', 'A05p39630' => 'bna', 'A05p39640' => 'bna', 'A09p00970' => 'bna', 'A09p53060' => 'bna', 'A10p31890' => 'bna', 'Aa31LG10G15040' => 'aar', 'Aa31LG1G21090' => 'aar', 'Aa31LG1G26900' => 'aar', 'Aa31LG3G1820' => 'aar', 'Aa31LG5G1100' => 'aar', 'Aa31LG6G4740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2265' => 'aag', 'Actinidia07998' => 'ach', 'Actinidia11266' => 'ach', 'Actinidia12682' => 'ach', 'Actinidia26479' => 'ach', 'Actinidia31406' => 'ach', 'Actinidia32437' => 'ach', 'Actinidia38862' => 'ach', 'Ah.05g174230' => 'amhyb', 'Ah.05g179070' => 'amhyb', 'Ah.05g179090' => 'amhyb', 'Ah.12g059950' => 'amhyb', 'AL3G20480' => 'aly', 'AL4G44520' => 'aly', 'AL5G43110' => 'aly', 'AL6G13890' => 'aly', 'AL6G52620' => 'aly', 'AL7G30830' => 'aly', 'Aqoxy1G00899' => 'aox', 'Aqoxy5G04333' => 'aox', 'Aqoxy7G00641' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3IZ0NN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4EF6AW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W9P8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79GA3M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C43NQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFCU6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G95YVJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCHK29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LU1UG8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX91RN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGB4B1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8DA0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9H7JI' => 'arhy', 'AT3G09320' => 'ath', 'AT3G60800' => 'ath', 'AT4G00840' => 'ath', 'AT4G22750' => 'ath', 'AT5G04270' => 'ath', 'ATR0090G003' => 'atr', 'ATR0559G349' => 'atr', 'ATR0680G261' => 'atr', 'ATR0810G048' => 'atr', 'Atru.chr12.831' => 'acertr', 'Atru.chr5.303' => 'acertr', 'Atru.chr5.748' => 'acertr', 'Atru.chr8.1999' => 'acertr', 'Atru.chr9.1436' => 'acertr', 'AUR62004211' => 'cqu', 'AUR62004548' => 'cqu', 'AUR62013637' => 'cqu', 'AUR62022662' => 'cqu', 'AUR62025777' => 'cqu', 'AUR62042386' => 'cqu', 'BcaB01g02310' => 'bca', 'BcaB01g06062' => 'bca', 'BcaB02g08975' => 'bca', 'BcaB02g08980' => 'bca', 'BcaC01g04228' => 'bca', 'BcaC01g06830' => 'bca', 'BcaC02g10186' => 'bca', 'BcaC02g12214' => 'bca', 'BcaC04g24101' => 'bca', 'BcaC05g29520' => 'bca', 'BcaC05g29661' => 'bca', 'BcaC06g32130' => 'bca', 'BcaC06g32131' => 'bca', 'BcaC07g40601' => 'bca', 'BcaC07g42641' => 'bca', 'BcaNung01038' => 'bca', 'BcaNung01676' => 'bca', 'BcaNung02480' => 'bca', 'BcaNung07376' => 'bca', 'BolC3t16146H' => 'bol', 'BolC3t16637H' => 'bol', 'BolC4t22257H' => 'bol', 'BolC4t24728H' => 'bol', 'BolC5t34517H' => 'bol', 'BolC7t45703H' => 'bol', 'BolC8t51166H' => 'bol', 'BolC9t53038H' => 'bol', 'BolC9t60000H' => 'bol', 'BraA01t01345Z' => 'bra', 'BraA01t01346Z' => 'bra', 'BraA01t01348Z' => 'bra', 'BraA03t12347Z' => 'bra', 'BraA03t12775Z' => 'bra', 'BraA03t14439Z' => 'bra', 'BraA04t15860Z' => 'bra', 'BraA05t19511Z' => 'bra', 'BraA05t22746Z' => 'bra', 'BraA09t35767Z' => 'bra', 'BraA09t40732Z' => 'bra', 'BraA10t45233Z' => 'bra', 'C03p38720' => 'bna', 'C03p43680' => 'bna', 'C04p06350' => 'bna', 'C04p31800' => 'bna', 'C05p58680' => 'bna', 'C07p52110' => 'bna', 'C08p35760' => 'bna', 'C09p01050' => 'bna', 'C09p72600' => 'bna', 'CAN.G106.2' => 'can', 'CAN.G1482.1' => 'can', 'CAN.G324.12' => 'can', 'CAN.G388.20' => 'can', 'CAN.G412.7' => 'can', 'CAN.G694.32' => 'can', 'CAN.G92.12' => 'can', 'CANSAT11G2353' => 'cansat', 'CANSAT21G1398' => 'cansat', 'CANSAT56G2456' => 'cansat', 'CANSAT56G3031' => 'cansat', 'CANSAT56G4539' => 'cansat', 'CARHR083680' => 'chi', 'CARHR171190' => 'chi', 'CARHR209010' => 'chi', 'CARHR229680' => 'chi', 'CARHR249490' => 'chi', 'Carub.0003s0844' => 'cru', 'Carub.0005s2755' => 'cru', 'Carub.0006s0322' => 'cru', 'Carub.0006s3586' => 'cru', 'Carub.0007s1855' => 'cru', 'Ca_07808_v3' => 'car', 'Ca_09535_v3' => 'car', 'Ca_10548_v3' => 'car', 'Ca_19913_v3' => 'car', 'Ca_19916_v3' => 'car', 'Ca_19975_v3' => 'car', 'CBR_g22876' => 'cbr', 'CBR_g22879' => 'cbr', 'CBR_g38491' => 'cbr', 'CBR_g54185' => 'cbr', 'CBR_g54190' => 'cbr', 'Cc02_g11020' => 'ccan', 'Cc02_g23920' => 'ccan', 'Cc02_g39860' => 'ccan', 'Cc02_g39870' => 'ccan', 'Cc03_g06760' => 'ccan', 'Cc06_g02450' => 'ccan', 'Cc09_g09450' => 'ccan', 'CDE02G1959' => 'cde', 'CDE04G0600' => 'cde', 'CDE07G1996' => 'cde', 'CDE07G2078' => 'cde', 'CDE11G0611' => 'cde', 'Cfa001683' => 'cfa', 'Cfa001734' => 'cfa', 'Cfa001737' => 'cfa', 'Cfa003751' => 'cfa', 'Cfa012019' => 'cfa', 'Cfa017353' => 'cfa', 'Cfa017732' => 'cfa', 'Cfa022464' => 'cfa', 'Ciclev10012400m.g' => 'ccl', 'Ciclev10021242m.g' => 'ccl', 'Ciclev10021302m.g' => 'ccl', 'Ciclev10021463m.g' => 'ccl', 'Ciclev10032359m.g' => 'ccl', 'CiPaw.01G081000' => 'cil', 'CiPaw.01G262500' => 'cil', 'CiPaw.01G269800' => 'cil', 'CiPaw.02G168400' => 'cil', 'CiPaw.05G119500' => 'cil', 'CiPaw.11G147300' => 'cil', 'ClCG01G003630' => 'cla', 'ClCG05G000510' => 'cla', 'ClCG05G002300' => 'cla', 'ClCG08G007650' => 'cla', 'ClCG10G021250' => 'cla', 'COL.COLO4_06218' => 'col', 'COL.COLO4_12538' => 'col', 'COL.COLO4_14775' => 'col', 'COL.COLO4_23875' => 'col', 'Cpa.g.sc141.16' => 'cpa', 'Cpa.g.sc169.16' => 'cpa', 'Cpa.g.sc244.4' => 'cpa', 'Cpa.g.sc244.5' => 'cpa', 'Cpa.g.sc29.87' => 'cpa', 'Cpa.g.sc53.115' => 'cpa', 'Cre03.g207502' => 'cre', 'Cre06.g277000' => 'cre', 'Cre09.g394050' => 'cre', 'CsaV3_3G007680' => 'csa', 'CsaV3_3G009710' => 'csa', 'CsaV3_3G034790' => 'csa', 'CsaV3_5G003750' => 'csa', 'CsaV3_6G036620' => 'csa', 'CSS0002288' => 'camsi', 'CSS0011250' => 'camsi', 'CSS0021619' => 'camsi', 'CSS0046701' => 'camsi', 'DCAR_006420' => 'dca', 'DCAR_006865' => 'dca', 'DCAR_008558' => 'dca', 'DCAR_028754' => 'dca', 'DCAR_028755' => 'dca', 'Dinv31218' => 'din', 'Dinv32371' => 'din', 'Dinv34250' => 'din', 'Dinv37156' => 'din', 'Dinv43704' => 'din', 'Duzib093G1811' => 'dzi', 'Duzib106G1622' => 'dzi', 'Duzib114G0504' => 'dzi', 'Duzib128G0338' => 'dzi', 'Duzib128G1577' => 'dzi', 'Duzib133G0104' => 'dzi', 'Duzib133G1080' => 'dzi', 'Duzib138G0324' => 'dzi', 'Duzib138G0394' => 'dzi', 'Duzib205G0122' => 'dzi', 'Duzib268G1020' => 'dzi', 'Duzib268G1359' => 'dzi', 'ECA232G3929' => 'eca', 'ECA236G2210' => 'eca', 'ECA236G2287' => 'eca', 'ECA240G4568' => 'eca', 'ECA247G0894' => 'eca', 'EL10Ac1g00200' => 'bvu', 'EL10Ac1g00886' => 'bvu', 'EL10As1g23091' => 'bvu', 'EL10As1g23092' => 'bvu', 'Eucgr.A01284' => 'egr', 'Eucgr.A01285' => 'egr', 'Eucgr.D02456' => 'egr', 'Eucgr.E00018' => 'egr', 'Eucgr.E01439' => 'egr', 'Eucgr.G02859' => 'egr', 'FAN01G0168' => 'fan', 'FAN01G0453' => 'fan', 'FAN01G2761' => 'fan', 'FAN02G1239' => 'fan', 'FAN03G0645' => 'fan', 'FAN03G2707' => 'fan', 'FAN03G2978' => 'fan', 'FAN04G0227' => 'fan', 'FAN06G0091' => 'fan', 'FAN06G1418' => 'fan', 'FAN06G1512' => 'fan', 'FAN06G1986' => 'fan', 'FAN06G2905' => 'fan', 'FAN06G4325' => 'fan', 'FAN08G0033' => 'fan', 'FAN09G0642' => 'fan', 'FAN10G1763' => 'fan', 'FAN10G2026' => 'fan', 'FAN10G2513' => 'fan', 'FAN10G3402' => 'fan', 'FAN10G3564' => 'fan', 'FAN10G3987' => 'fan', 'FAN13G1490' => 'fan', 'FAN14G5857' => 'fan', 'FAN18G1188' => 'fan', 'FvH4_5g00750' => 'fve', 'FvH4_6g13410' => 'fve', 'FvH4_7g11740' => 'fve', 'FvH4_7g17410' => 'fve', 'FvH4_7g18860' => 'fve', 'Glyma.01G099100' => 'gma', 'Glyma.01G142300' => 'gma', 'Glyma.03G025500' => 'gma', 'Glyma.03G069700' => 'gma', 'Glyma.03G260000' => 'gma', 'Glyma.09G269800' => 'gma', 'Glyma.10G208700' => 'gma', 'Glyma.18G220400' => 'gma', 'Glyma.20G182000' => 'gma', 'Gohir.A01G221726' => 'ghi', 'Gohir.A07G134600' => 'ghi', 'Gohir.A07G146000' => 'ghi', 'Gohir.A08G173900' => 'ghi', 'Gohir.A09G194900' => 'ghi', 'Gohir.A10G204100' => 'ghi', 'Gohir.A11G080600' => 'ghi', 'Gohir.A11G327500' => 'ghi', 'Gohir.A12G101800' => 'ghi', 'Gohir.D01G211200' => 'ghi', 'Gohir.D07G139200' => 'ghi', 'Gohir.D07G152100' => 'ghi', 'Gohir.D08G192600' => 'ghi', 'Gohir.D09G189200' => 'ghi', 'Gohir.D10G212000' => 'ghi', 'Gohir.D11G085200' => 'ghi', 'Gohir.D11G346400' => 'ghi', 'Gohir.D12G104800' => 'ghi', 'Gorai.001G151300' => 'gra', 'Gorai.001G174100' => 'gra', 'Gorai.002G257000' => 'gra', 'Gorai.004G202600' => 'gra', 'Gorai.007G090900' => 'gra', 'Gorai.007G376700' => 'gra', 'Gorai.008G114100' => 'gra', 'Gorai.011G237900' => 'gra', 'GSVIVG01005450001' => 'vvi', 'GSVIVG01016232001' => 'vvi', 'GSVIVG01026157001' => 'vvi', 'GSVIVG01027419001' => 'vvi', 'GSVIVG01027631001' => 'vvi', 'GSVIVG01034143001' => 'vvi', 'HanXRQChr03g0093921' => 'han', 'HanXRQChr04g0120001' => 'han', 'HanXRQChr04g0122561' => 'han', 'HanXRQChr09g0246851' => 'han', 'HanXRQChr10g0293311' => 'han', 'HanXRQChr13g0425231' => 'han', 'HanXRQChr16g0532571' => 'han', 'Haze_09050' => 'cav', 'Haze_15715' => 'cav', 'Haze_15716' => 'cav', 'Haze_16803' => 'cav', 'Haze_16850' => 'cav', 'Hma1.2p1_0301F.1_g118655' => 'hma', 'Hma1.2p1_0309F.1_g120590' => 'hma', 'Hma1.2p1_0936F.1_g238900' => 'hma', 'Hma1.2p1_3552F.1_g336740' => 'hma', 'HPP92_003520' => 'vpl', 'HPP92_006628' => 'vpl', 'HPP92_006645' => 'vpl', 'HPP92_014669' => 'vpl', 'HPP92_015077' => 'vpl', 'Hund16742' => 'sun', 'Hund17022' => 'sun', 'Lalb_Chr02g0152131' => 'lal', 'Lalb_Chr05g0225371' => 'lal', 'Lalb_Chr07g0189841' => 'lal', 'Lalb_Chr07g0192961' => 'lal', 'Lalb_Chr12g0208221' => 'lal', 'Lalb_Chr13g0291211' => 'lal', 'Lalb_Chr13g0291781' => 'lal', 'Lalb_Chr18g0044651' => 'lal', 'Lalb_Chr21g0313731' => 'lal', 'Lj1g0022533' => 'lja', 'Lj2A18T50' => 'lonja', 'Lj2A92G93' => 'lonja', 'Lj3A965T73' => 'lonja', 'Lj3g0000673' => 'lja', 'Lj3g0002666' => 'lja', 'Lj4g0016985' => 'lja', 'Lj5g0003625' => 'lja', 'Lj7A529G36' => 'lonja', 'Lj9A569T49' => 'lonja', 'Lj9A604T63' => 'lonja', 'Lsat_1_v5_gn_3_132060' => 'lsa', 'Lsat_1_v5_gn_4_68941' => 'lsa', 'Lsat_1_v5_gn_5_95580' => 'lsa', 'Lsat_1_v5_gn_7_161' => 'lsa', 'Lsat_1_v5_gn_7_7041' => 'lsa', 'Lsat_1_v5_gn_9_33481' => 'lsa', 'Lsat_1_v5_gn_9_68260' => 'lsa', 'Manes.01G073100' => 'mes', 'Manes.01G266300' => 'mes', 'Manes.02G033300' => 'mes', 'Manes.05G017900' => 'mes', 'Manes.05G046100' => 'mes', 'Manes.08G080900' => 'mes', 'Manes.10G049400' => 'mes', 'Mapoly0009s0186' => 'mpo', 'Mapoly0036s0118' => 'mpo', 'Mapoly0101s0046' => 'mpo', 'MBI04_g30218_MAGBIO' => 'mbi', 'MBI04_g35564_MAGBIO' => 'mbi', 'MBI12_g34011_MAGBIO' => 'mbi', 'MBI14_g04655_MAGBIO' => 'mbi', 'MCO07G653' => 'mco', 'MCO10G173' => 'mco', 'MD01G1087100' => 'mdo', 'MD01G1104200' => 'mdo', 'MD02G1205100' => 'mdo', 'MD04G1079200' => 'mdo', 'MD04G1131400' => 'mdo', 'MD07G1121600' => 'mdo', 'MD07G1157300' => 'mdo', 'MD07G1171000' => 'mdo', 'MD12G1144500' => 'mdo', 'Medtr1g094610' => 'mtr', 'Medtr4g021795' => 'mtr', 'Medtr4g023760' => 'mtr', 'Medtr7g118050' => 'mtr', 'MELO3C005582.2' => 'cme', 'MELO3C005989.2' => 'cme', 'MELO3C006192.2' => 'cme', 'MELO3C009248.2' => 'cme', 'MELO3C019817.2' => 'cme', 'Migut.B01625' => 'egut', 'Migut.B01915' => 'egut', 'Migut.F01721' => 'egut', 'Migut.J00314' => 'egut', 'MSTRG.20742' => 'ama', 'MSTRG.8134' => 'ama', 'Nitab4.5_0000096g0010' => 'nta', 'Nitab4.5_0000202g0030' => 'nta', 'Nitab4.5_0000216g0370' => 'nta', 'Nitab4.5_0000457g0230' => 'nta', 'Nitab4.5_0001702g0170' => 'nta', 'Nitab4.5_0003607g0010' => 'nta', 'Nitab4.5_0004917g0020' => 'nta', 'Nitab4.5_0007059g0010' => 'nta', 'Nitab4.5_0007184g0010' => 'nta', 'Nitab4.5_0007346g0020' => 'nta', 'Nn1g00410' => 'nnu', 'Nn1g01252' => 'nnu', 'Nn2g11168' => 'nnu', 'Nn2g13403' => 'nnu', 'Nn2g13760' => 'nnu', 'Nn4g26380' => 'nnu', 'Oeu000806.2' => 'oeu', 'Oeu005788.1' => 'oeu', 'Oeu006900.3' => 'oeu', 'Oeu007797.1' => 'oeu', 'Oeu011932.1' => 'oeu', 'Oeu022739.1' => 'oeu', 'Oeu037918.1' => 'oeu', 'Oeu055490.2' => 'oeu', 'Os01g0844400' => 'osa', 'Os02g0819100' => 'osa', 'Os03g0804300' => 'osa', 'Os05g0458000' => 'osa', 'Os07g0467800' => 'osa', 'Os12g0602200' => 'osa', 'Peaxi162Scf00013g03444' => 'pax', 'Peaxi162Scf00094g01120' => 'pax', 'Peaxi162Scf00191g01211' => 'pax', 'Peaxi162Scf00238g01110' => 'pax', 'Peaxi162Scf00330g00719' => 'pax', 'Peaxi162Scf00627g00018' => 'pax', 'PGR031G2686' => 'pgr', 'PGR042G0809' => 'pgr', 'PGR142G0193' => 'pgr', 'PGSC0003DMG400011066' => 'stu', 'PGSC0003DMG400012041' => 'stu', 'PGSC0003DMG400013678' => 'stu', 'PGSC0003DMG400023477' => 'stu', 'PGSC0003DMG400025956' => 'stu', 'PGSC0003DMG401019151' => 'stu', 'Phvul.006G116400' => 'pvu', 'Phvul.007G097300' => 'pvu', 'Phvul.010G015000' => 'pvu', 'Phvul.010G083900' => 'pvu', 'Potri.001G117100' => 'ptr', 'Potri.002G147300' => 'ptr', 'Potri.003G115600' => 'ptr', 'Potri.006G087400' => 'ptr', 'Potri.010G226100' => 'ptr', 'Potri.014G069200' => 'ptr', 'Potri.014G104000' => 'ptr', 'Potri.016G100200' => 'ptr', 'Pp3c10_20450' => 'ppa', 'Pp3c1_42400' => 'ppa', 'Pp3c3_24390' => 'ppa', 'Pp3c3_2860' => 'ppa', 'PRCOL_00003193' => 'pco', 'Prupe.2G144500' => 'ppe', 'Prupe.2G195700' => 'ppe', 'Prupe.2G209800' => 'ppe', 'Prupe.5G080000' => 'ppe', 'Prupe.6G257900' => 'ppe', 'Psat3g001160' => 'psa', 'Psat6g181880' => 'psa', 'Psat7g233720' => 'psa', 'PSO063G7587' => 'pso', 'PSO339G2145' => 'pso', 'PSO339G3369' => 'pso', 'PSO478G2747' => 'pso', 'PSO513G0140' => 'pso', 'PSO782G1614' => 'pso', 'PSO782G4889' => 'pso', 'PSO782G5485' => 'pso', 'PSO801G0241' => 'pso', 'QL07p048854' => 'qlo', 'QL08p046745' => 'qlo', 'QL08p052606' => 'qlo', 'QL08p053414' => 'qlo', 'QL08p054868' => 'qlo', 'RcHm_v2.0_Chr1g0350251' => 'rch', 'RcHm_v2.0_Chr1g0360851' => 'rch', 'RcHm_v2.0_Chr1g0362791' => 'rch', 'RcHm_v2.0_Chr3g0466281' => 'rch', 'RcHm_v2.0_Chr7g0201481' => 'rch', 'Rhsim01G0148600' => 'rsi', 'Rhsim05G0194400' => 'rsi', 'Rhsim07G0000700' => 'rsi', 'Rhsim07G0000800' => 'rsi', 'Rhsim07G0027900' => 'rsi', 'Rhsim09G0149500' => 'rsi', 'RhsimUnG0186900' => 'rsi', 'Sabra01G0089900' => 'sbr', 'Sabra02G0114700' => 'sbr', 'Sabra02G0116300' => 'sbr', 'Sabra03G0080100' => 'sbr', 'Sabra08G0024300' => 'sbr', 'Sabra10G0174300' => 'sbr', 'Sabra14G0048900' => 'sbr', 'Sabra14G0076500' => 'sbr', 'SalBow5G2513' => 'sbo', 'Sc01g0002300' => 'sci', 'Sc01g0004450' => 'sci', 'Sc06g0001680' => 'sci', 'Sc23g0003580' => 'sci', 'Sed0000913' => 'sed', 'Sed0001655' => 'sed', 'Sed0007745' => 'sed', 'Sed0010951' => 'sed', 'Sed0017599' => 'sed', 'Sed0021405' => 'sed', 'Sed0022810' => 'sed', 'SEGI_07099' => 'sgi', 'SEGI_11931' => 'sgi', 'SEGI_13187' => 'sgi', 'SEGI_29958' => 'sgi', 'SEGI_36351' => 'sgi', 'SGA_v2.0_scaffold126G33770' => 'sas', 'SGA_v2.0_scaffold153G37003' => 'sas', 'SGA_v2.0_scaffold2G01359' => 'sas', 'SGA_v2.0_scaffold5G03064' => 'sas', 'SGA_v2.0_scaffold95G28903' => 'sas', 'SHI12701' => 'shi', 'SHI26410' => 'shi', 'SHI38997' => 'shi', 'SHI53759' => 'shi', 'SHI53886' => 'shi', 'SHI54714' => 'shi', 'SMO011G0041' => 'smo', 'SMO146G0251' => 'smo', 'SMO160G0004' => 'smo', 'SMO174G0057' => 'smo', 'SMO244G0089' => 'smo', 'SMO296G0011' => 'smo', 'Solyc01g091280.3' => 'sly', 'Solyc05g047610.3' => 'sly', 'Solyc05g047640.3' => 'sly', 'Solyc05g055630.3' => 'sly', 'Solyc10g018160.2' => 'sly', 'Solyc10g084820.2' => 'sly', 'Solyc10g086565.2' => 'sly', 'Sopen01g037030' => 'spe', 'Sopen05g027920' => 'spe', 'Sopen05g034070' => 'spe', 'Sopen10g007260' => 'spe', 'Sopen10g034260' => 'spe', 'Sopen10g035950' => 'spe', 'Sp3g07710' => 'spa', 'Sp4g27420' => 'spa', 'Sp5g02450' => 'spa', 'Sp6g01280' => 'spa', 'Sp6g38480' => 'spa', 'Sp7g20780' => 'spa', 'TAR374G1413' => 'tar', 'TAR623G1777' => 'tar', 'TAR629G2370' => 'tar', 'TAR633G1759' => 'tar', 'TAR636G3387' => 'tar', 'THA.LOC104802447' => 'tha', 'THA.LOC104813916' => 'tha', 'THA.LOC104816423' => 'tha', 'THA.LOC104817246' => 'tha', 'THA.LOC104825895' => 'tha', 'Thecc.01G335200' => 'tca', 'Thecc.01G377400' => 'tca', 'Thecc.03G262200' => 'tca', 'Thecc.05G036800' => 'tca', 'Thecc.10G080500' => 'tca', 'Thecc.10G080800' => 'tca', 'Thhalv10001560m.g' => 'esa', 'Thhalv10006120m.g' => 'esa', 'Thhalv10014375m.g' => 'esa', 'Thhalv10021264m.g' => 'esa', 'Thhalv10028856m.g' => 'esa', 'TPR.G1914' => 'tpr', 'TPR.G4757' => 'tpr', 'TPR.G5595' => 'tpr', 'TWI14G0952' => 'twi', 'TWI14G1307' => 'twi', 'TWI38G2143' => 'twi', 'TWI59G0826' => 'twi', 'TWI77G0527' => 'twi', 'TWI81G0150' => 'twi', 'unitig_21.g21018' => 'ugi', 'unitig_26.g9725' => 'ugi', 'unitig_744.g24653' => 'ugi', 'unitig_749.g13778' => 'ugi', 'unitig_899.g15035' => 'ugi', 'vmacro04296' => 'vma', 'vmacro04852' => 'vma', 'vmacro13404' => 'vma', 'vmacro20169' => 'vma', 'vmacro21014' => 'vma', 'VMungo0331G0237' => 'vmu', 'VMungo0331G0706' => 'vmu', 'VMungo0331G1361' => 'vmu', 'VMungo0331G1489' => 'vmu', 'VMungo0540G1037' => 'vmu', 'VMungo0720G2487' => 'vmu', 'VMungo0720G2721' => 'vmu', 'Zm00001eb086860' => 'zma', 'Zm00001eb104760' => 'zma', 'Zm00001eb148220' => 'zma', 'Zm00001eb259030' => 'zma', 'Zm00001eb289590' => 'zma', 'Zm00001eb420150' => 'zma' ), 'gf_id' => 'HOM05D000968', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000968' ), 'data_identifier' => 'HOM05D000968', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000968', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p31690' => 'bna', 'A03p36040' => 'bna', 'A03p53730' => 'bna', 'A04p01410' => 'bna', 'A05p05420' => 'bna', 'A05p39630' => 'bna', 'A05p39640' => 'bna', 'A09p00970' => 'bna', 'A09p53060' => 'bna', 'A10p31890' => 'bna', 'Aa31LG10G15040' => 'aar', 'Aa31LG1G21090' => 'aar', 'Aa31LG1G26900' => 'aar', 'Aa31LG3G1820' => 'aar', 'Aa31LG5G1100' => 'aar', 'Aa31LG6G4740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2265' => 'aag', 'Actinidia07998' => 'ach', 'Actinidia11266' => 'ach', 'Actinidia12682' => 'ach', 'Actinidia26479' => 'ach', 'Actinidia31406' => 'ach', 'Actinidia32437' => 'ach', 'Actinidia38862' => 'ach', 'Ah.05g174230' => 'amhyb', 'Ah.05g179070' => 'amhyb', 'Ah.05g179090' => 'amhyb', 'Ah.12g059950' => 'amhyb', 'AL3G20480' => 'aly', 'AL4G44520' => 'aly', 'AL5G43110' => 'aly', 'AL6G13890' => 'aly', 'AL6G52620' => 'aly', 'AL7G30830' => 'aly', 'Aqoxy1G00899' => 'aox', 'Aqoxy5G04333' => 'aox', 'Aqoxy7G00641' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3IZ0NN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4EF6AW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W9P8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79GA3M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C43NQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFCU6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G95YVJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCHK29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LU1UG8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX91RN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGB4B1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8DA0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9H7JI' => 'arhy', 'AT3G09320' => 'ath', 'AT3G60800' => 'ath', 'AT4G00840' => 'ath', 'AT4G22750' => 'ath', 'AT5G04270' => 'ath', 'ATR0090G003' => 'atr', 'ATR0559G349' => 'atr', 'ATR0680G261' => 'atr', 'ATR0810G048' => 'atr', 'Atru.chr12.831' => 'acertr', 'Atru.chr5.303' => 'acertr', 'Atru.chr5.748' => 'acertr', 'Atru.chr8.1999' => 'acertr', 'Atru.chr9.1436' => 'acertr', 'AUR62004211' => 'cqu', 'AUR62004548' => 'cqu', 'AUR62013637' => 'cqu', 'AUR62022662' => 'cqu', 'AUR62025777' => 'cqu', 'AUR62042386' => 'cqu', 'BcaB01g02310' => 'bca', 'BcaB01g06062' => 'bca', 'BcaB02g08975' => 'bca', 'BcaB02g08980' => 'bca', 'BcaC01g04228' => 'bca', 'BcaC01g06830' => 'bca', 'BcaC02g10186' => 'bca', 'BcaC02g12214' => 'bca', 'BcaC04g24101' => 'bca', 'BcaC05g29520' => 'bca', 'BcaC05g29661' => 'bca', 'BcaC06g32130' => 'bca', 'BcaC06g32131' => 'bca', 'BcaC07g40601' => 'bca', 'BcaC07g42641' => 'bca', 'BcaNung01038' => 'bca', 'BcaNung01676' => 'bca', 'BcaNung02480' => 'bca', 'BcaNung07376' => 'bca', 'BolC3t16146H' => 'bol', 'BolC3t16637H' => 'bol', 'BolC4t22257H' => 'bol', 'BolC4t24728H' => 'bol', 'BolC5t34517H' => 'bol', 'BolC7t45703H' => 'bol', 'BolC8t51166H' => 'bol', 'BolC9t53038H' => 'bol', 'BolC9t60000H' => 'bol', 'BraA01t01345Z' => 'bra', 'BraA01t01346Z' => 'bra', 'BraA01t01348Z' => 'bra', 'BraA03t12347Z' => 'bra', 'BraA03t12775Z' => 'bra', 'BraA03t14439Z' => 'bra', 'BraA04t15860Z' => 'bra', 'BraA05t19511Z' => 'bra', 'BraA05t22746Z' => 'bra', 'BraA09t35767Z' => 'bra', 'BraA09t40732Z' => 'bra', 'BraA10t45233Z' => 'bra', 'C03p38720' => 'bna', 'C03p43680' => 'bna', 'C04p06350' => 'bna', 'C04p31800' => 'bna', 'C05p58680' => 'bna', 'C07p52110' => 'bna', 'C08p35760' => 'bna', 'C09p01050' => 'bna', 'C09p72600' => 'bna', 'CAN.G106.2' => 'can', 'CAN.G1482.1' => 'can', 'CAN.G324.12' => 'can', 'CAN.G388.20' => 'can', 'CAN.G412.7' => 'can', 'CAN.G694.32' => 'can', 'CAN.G92.12' => 'can', 'CANSAT11G2353' => 'cansat', 'CANSAT21G1398' => 'cansat', 'CANSAT56G2456' => 'cansat', 'CANSAT56G3031' => 'cansat', 'CANSAT56G4539' => 'cansat', 'CARHR083680' => 'chi', 'CARHR171190' => 'chi', 'CARHR209010' => 'chi', 'CARHR229680' => 'chi', 'CARHR249490' => 'chi', 'Carub.0003s0844' => 'cru', 'Carub.0005s2755' => 'cru', 'Carub.0006s0322' => 'cru', 'Carub.0006s3586' => 'cru', 'Carub.0007s1855' => 'cru', 'Ca_07808_v3' => 'car', 'Ca_09535_v3' => 'car', 'Ca_10548_v3' => 'car', 'Ca_19913_v3' => 'car', 'Ca_19916_v3' => 'car', 'Ca_19975_v3' => 'car', 'CBR_g22876' => 'cbr', 'CBR_g22879' => 'cbr', 'CBR_g38491' => 'cbr', 'CBR_g54185' => 'cbr', 'CBR_g54190' => 'cbr', 'Cc02_g11020' => 'ccan', 'Cc02_g23920' => 'ccan', 'Cc02_g39860' => 'ccan', 'Cc02_g39870' => 'ccan', 'Cc03_g06760' => 'ccan', 'Cc06_g02450' => 'ccan', 'Cc09_g09450' => 'ccan', 'CDE02G1959' => 'cde', 'CDE04G0600' => 'cde', 'CDE07G1996' => 'cde', 'CDE07G2078' => 'cde', 'CDE11G0611' => 'cde', 'Cfa001683' => 'cfa', 'Cfa001734' => 'cfa', 'Cfa001737' => 'cfa', 'Cfa003751' => 'cfa', 'Cfa012019' => 'cfa', 'Cfa017353' => 'cfa', 'Cfa017732' => 'cfa', 'Cfa022464' => 'cfa', 'Ciclev10012400m.g' => 'ccl', 'Ciclev10021242m.g' => 'ccl', 'Ciclev10021302m.g' => 'ccl', 'Ciclev10021463m.g' => 'ccl', 'Ciclev10032359m.g' => 'ccl', 'CiPaw.01G081000' => 'cil', 'CiPaw.01G262500' => 'cil', 'CiPaw.01G269800' => 'cil', 'CiPaw.02G168400' => 'cil', 'CiPaw.05G119500' => 'cil', 'CiPaw.11G147300' => 'cil', 'ClCG01G003630' => 'cla', 'ClCG05G000510' => 'cla', 'ClCG05G002300' => 'cla', 'ClCG08G007650' => 'cla', 'ClCG10G021250' => 'cla', 'COL.COLO4_06218' => 'col', 'COL.COLO4_12538' => 'col', 'COL.COLO4_14775' => 'col', 'COL.COLO4_23875' => 'col', 'Cpa.g.sc141.16' => 'cpa', 'Cpa.g.sc169.16' => 'cpa', 'Cpa.g.sc244.4' => 'cpa', 'Cpa.g.sc244.5' => 'cpa', 'Cpa.g.sc29.87' => 'cpa', 'Cpa.g.sc53.115' => 'cpa', 'Cre03.g207502' => 'cre', 'Cre06.g277000' => 'cre', 'Cre09.g394050' => 'cre', 'CsaV3_3G007680' => 'csa', 'CsaV3_3G009710' => 'csa', 'CsaV3_3G034790' => 'csa', 'CsaV3_5G003750' => 'csa', 'CsaV3_6G036620' => 'csa', 'CSS0002288' => 'camsi', 'CSS0011250' => 'camsi', 'CSS0021619' => 'camsi', 'CSS0046701' => 'camsi', 'DCAR_006420' => 'dca', 'DCAR_006865' => 'dca', 'DCAR_008558' => 'dca', 'DCAR_028754' => 'dca', 'DCAR_028755' => 'dca', 'Dinv31218' => 'din', 'Dinv32371' => 'din', 'Dinv34250' => 'din', 'Dinv37156' => 'din', 'Dinv43704' => 'din', 'Duzib093G1811' => 'dzi', 'Duzib106G1622' => 'dzi', 'Duzib114G0504' => 'dzi', 'Duzib128G0338' => 'dzi', 'Duzib128G1577' => 'dzi', 'Duzib133G0104' => 'dzi', 'Duzib133G1080' => 'dzi', 'Duzib138G0324' => 'dzi', 'Duzib138G0394' => 'dzi', 'Duzib205G0122' => 'dzi', 'Duzib268G1020' => 'dzi', 'Duzib268G1359' => 'dzi', 'ECA232G3929' => 'eca', 'ECA236G2210' => 'eca', 'ECA236G2287' => 'eca', 'ECA240G4568' => 'eca', 'ECA247G0894' => 'eca', 'EL10Ac1g00200' => 'bvu', 'EL10Ac1g00886' => 'bvu', 'EL10As1g23091' => 'bvu', 'EL10As1g23092' => 'bvu', 'Eucgr.A01284' => 'egr', 'Eucgr.A01285' => 'egr', 'Eucgr.D02456' => 'egr', 'Eucgr.E00018' => 'egr', 'Eucgr.E01439' => 'egr', 'Eucgr.G02859' => 'egr', 'FAN01G0168' => 'fan', 'FAN01G0453' => 'fan', 'FAN01G2761' => 'fan', 'FAN02G1239' => 'fan', 'FAN03G0645' => 'fan', 'FAN03G2707' => 'fan', 'FAN03G2978' => 'fan', 'FAN04G0227' => 'fan', 'FAN06G0091' => 'fan', 'FAN06G1418' => 'fan', 'FAN06G1512' => 'fan', 'FAN06G1986' => 'fan', 'FAN06G2905' => 'fan', 'FAN06G4325' => 'fan', 'FAN08G0033' => 'fan', 'FAN09G0642' => 'fan', 'FAN10G1763' => 'fan', 'FAN10G2026' => 'fan', 'FAN10G2513' => 'fan', 'FAN10G3402' => 'fan', 'FAN10G3564' => 'fan', 'FAN10G3987' => 'fan', 'FAN13G1490' => 'fan', 'FAN14G5857' => 'fan', 'FAN18G1188' => 'fan', 'FvH4_5g00750' => 'fve', 'FvH4_6g13410' => 'fve', 'FvH4_7g11740' => 'fve', 'FvH4_7g17410' => 'fve', 'FvH4_7g18860' => 'fve', 'Glyma.01G099100' => 'gma', 'Glyma.01G142300' => 'gma', 'Glyma.03G025500' => 'gma', 'Glyma.03G069700' => 'gma', 'Glyma.03G260000' => 'gma', 'Glyma.09G269800' => 'gma', 'Glyma.10G208700' => 'gma', 'Glyma.18G220400' => 'gma', 'Glyma.20G182000' => 'gma', 'Gohir.A01G221726' => 'ghi', 'Gohir.A07G134600' => 'ghi', 'Gohir.A07G146000' => 'ghi', 'Gohir.A08G173900' => 'ghi', 'Gohir.A09G194900' => 'ghi', 'Gohir.A10G204100' => 'ghi', 'Gohir.A11G080600' => 'ghi', 'Gohir.A11G327500' => 'ghi', 'Gohir.A12G101800' => 'ghi', 'Gohir.D01G211200' => 'ghi', 'Gohir.D07G139200' => 'ghi', 'Gohir.D07G152100' => 'ghi', 'Gohir.D08G192600' => 'ghi', 'Gohir.D09G189200' => 'ghi', 'Gohir.D10G212000' => 'ghi', 'Gohir.D11G085200' => 'ghi', 'Gohir.D11G346400' => 'ghi', 'Gohir.D12G104800' => 'ghi', 'Gorai.001G151300' => 'gra', 'Gorai.001G174100' => 'gra', 'Gorai.002G257000' => 'gra', 'Gorai.004G202600' => 'gra', 'Gorai.007G090900' => 'gra', 'Gorai.007G376700' => 'gra', 'Gorai.008G114100' => 'gra', 'Gorai.011G237900' => 'gra', 'GSVIVG01005450001' => 'vvi', 'GSVIVG01016232001' => 'vvi', 'GSVIVG01026157001' => 'vvi', 'GSVIVG01027419001' => 'vvi', 'GSVIVG01027631001' => 'vvi', 'GSVIVG01034143001' => 'vvi', 'HanXRQChr03g0093921' => 'han', 'HanXRQChr04g0120001' => 'han', 'HanXRQChr04g0122561' => 'han', 'HanXRQChr09g0246851' => 'han', 'HanXRQChr10g0293311' => 'han', 'HanXRQChr13g0425231' => 'han', 'HanXRQChr16g0532571' => 'han', 'Haze_09050' => 'cav', 'Haze_15715' => 'cav', 'Haze_15716' => 'cav', 'Haze_16803' => 'cav', 'Haze_16850' => 'cav', 'Hma1.2p1_0301F.1_g118655' => 'hma', 'Hma1.2p1_0309F.1_g120590' => 'hma', 'Hma1.2p1_0936F.1_g238900' => 'hma', 'Hma1.2p1_3552F.1_g336740' => 'hma', 'HPP92_003520' => 'vpl', 'HPP92_006628' => 'vpl', 'HPP92_006645' => 'vpl', 'HPP92_014669' => 'vpl', 'HPP92_015077' => 'vpl', 'Hund16742' => 'sun', 'Hund17022' => 'sun', 'Lalb_Chr02g0152131' => 'lal', 'Lalb_Chr05g0225371' => 'lal', 'Lalb_Chr07g0189841' => 'lal', 'Lalb_Chr07g0192961' => 'lal', 'Lalb_Chr12g0208221' => 'lal', 'Lalb_Chr13g0291211' => 'lal', 'Lalb_Chr13g0291781' => 'lal', 'Lalb_Chr18g0044651' => 'lal', 'Lalb_Chr21g0313731' => 'lal', 'Lj1g0022533' => 'lja', 'Lj2A18T50' => 'lonja', 'Lj2A92G93' => 'lonja', 'Lj3A965T73' => 'lonja', 'Lj3g0000673' => 'lja', 'Lj3g0002666' => 'lja', 'Lj4g0016985' => 'lja', 'Lj5g0003625' => 'lja', 'Lj7A529G36' => 'lonja', 'Lj9A569T49' => 'lonja', 'Lj9A604T63' => 'lonja', 'Lsat_1_v5_gn_3_132060' => 'lsa', 'Lsat_1_v5_gn_4_68941' => 'lsa', 'Lsat_1_v5_gn_5_95580' => 'lsa', 'Lsat_1_v5_gn_7_161' => 'lsa', 'Lsat_1_v5_gn_7_7041' => 'lsa', 'Lsat_1_v5_gn_9_33481' => 'lsa', 'Lsat_1_v5_gn_9_68260' => 'lsa', 'Manes.01G073100' => 'mes', 'Manes.01G266300' => 'mes', 'Manes.02G033300' => 'mes', 'Manes.05G017900' => 'mes', 'Manes.05G046100' => 'mes', 'Manes.08G080900' => 'mes', 'Manes.10G049400' => 'mes', 'Mapoly0009s0186' => 'mpo', 'Mapoly0036s0118' => 'mpo', 'Mapoly0101s0046' => 'mpo', 'MBI04_g30218_MAGBIO' => 'mbi', 'MBI04_g35564_MAGBIO' => 'mbi', 'MBI12_g34011_MAGBIO' => 'mbi', 'MBI14_g04655_MAGBIO' => 'mbi', 'MCO07G653' => 'mco', 'MCO10G173' => 'mco', 'MD01G1087100' => 'mdo', 'MD01G1104200' => 'mdo', 'MD02G1205100' => 'mdo', 'MD04G1079200' => 'mdo', 'MD04G1131400' => 'mdo', 'MD07G1121600' => 'mdo', 'MD07G1157300' => 'mdo', 'MD07G1171000' => 'mdo', 'MD12G1144500' => 'mdo', 'Medtr1g094610' => 'mtr', 'Medtr4g021795' => 'mtr', 'Medtr4g023760' => 'mtr', 'Medtr7g118050' => 'mtr', 'MELO3C005582.2' => 'cme', 'MELO3C005989.2' => 'cme', 'MELO3C006192.2' => 'cme', 'MELO3C009248.2' => 'cme', 'MELO3C019817.2' => 'cme', 'Migut.B01625' => 'egut', 'Migut.B01915' => 'egut', 'Migut.F01721' => 'egut', 'Migut.J00314' => 'egut', 'MSTRG.20742' => 'ama', 'MSTRG.8134' => 'ama', 'Nitab4.5_0000096g0010' => 'nta', 'Nitab4.5_0000202g0030' => 'nta', 'Nitab4.5_0000216g0370' => 'nta', 'Nitab4.5_0000457g0230' => 'nta', 'Nitab4.5_0001702g0170' => 'nta', 'Nitab4.5_0003607g0010' => 'nta', 'Nitab4.5_0004917g0020' => 'nta', 'Nitab4.5_0007059g0010' => 'nta', 'Nitab4.5_0007184g0010' => 'nta', 'Nitab4.5_0007346g0020' => 'nta', 'Nn1g00410' => 'nnu', 'Nn1g01252' => 'nnu', 'Nn2g11168' => 'nnu', 'Nn2g13403' => 'nnu', 'Nn2g13760' => 'nnu', 'Nn4g26380' => 'nnu', 'Oeu000806.2' => 'oeu', 'Oeu005788.1' => 'oeu', 'Oeu006900.3' => 'oeu', 'Oeu007797.1' => 'oeu', 'Oeu011932.1' => 'oeu', 'Oeu022739.1' => 'oeu', 'Oeu037918.1' => 'oeu', 'Oeu055490.2' => 'oeu', 'Os01g0844400' => 'osa', 'Os02g0819100' => 'osa', 'Os03g0804300' => 'osa', 'Os05g0458000' => 'osa', 'Os07g0467800' => 'osa', 'Os12g0602200' => 'osa', 'Peaxi162Scf00013g03444' => 'pax', 'Peaxi162Scf00094g01120' => 'pax', 'Peaxi162Scf00191g01211' => 'pax', 'Peaxi162Scf00238g01110' => 'pax', 'Peaxi162Scf00330g00719' => 'pax', 'Peaxi162Scf00627g00018' => 'pax', 'PGR031G2686' => 'pgr', 'PGR042G0809' => 'pgr', 'PGR142G0193' => 'pgr', 'PGSC0003DMG400011066' => 'stu', 'PGSC0003DMG400012041' => 'stu', 'PGSC0003DMG400013678' => 'stu', 'PGSC0003DMG400023477' => 'stu', 'PGSC0003DMG400025956' => 'stu', 'PGSC0003DMG401019151' => 'stu', 'Phvul.006G116400' => 'pvu', 'Phvul.007G097300' => 'pvu', 'Phvul.010G015000' => 'pvu', 'Phvul.010G083900' => 'pvu', 'Potri.001G117100' => 'ptr', 'Potri.002G147300' => 'ptr', 'Potri.003G115600' => 'ptr', 'Potri.006G087400' => 'ptr', 'Potri.010G226100' => 'ptr', 'Potri.014G069200' => 'ptr', 'Potri.014G104000' => 'ptr', 'Potri.016G100200' => 'ptr', 'Pp3c10_20450' => 'ppa', 'Pp3c1_42400' => 'ppa', 'Pp3c3_24390' => 'ppa', 'Pp3c3_2860' => 'ppa', 'PRCOL_00003193' => 'pco', 'Prupe.2G144500' => 'ppe', 'Prupe.2G195700' => 'ppe', 'Prupe.2G209800' => 'ppe', 'Prupe.5G080000' => 'ppe', 'Prupe.6G257900' => 'ppe', 'Psat3g001160' => 'psa', 'Psat6g181880' => 'psa', 'Psat7g233720' => 'psa', 'PSO063G7587' => 'pso', 'PSO339G2145' => 'pso', 'PSO339G3369' => 'pso', 'PSO478G2747' => 'pso', 'PSO513G0140' => 'pso', 'PSO782G1614' => 'pso', 'PSO782G4889' => 'pso', 'PSO782G5485' => 'pso', 'PSO801G0241' => 'pso', 'QL07p048854' => 'qlo', 'QL08p046745' => 'qlo', 'QL08p052606' => 'qlo', 'QL08p053414' => 'qlo', 'QL08p054868' => 'qlo', 'RcHm_v2.0_Chr1g0350251' => 'rch', 'RcHm_v2.0_Chr1g0360851' => 'rch', 'RcHm_v2.0_Chr1g0362791' => 'rch', 'RcHm_v2.0_Chr3g0466281' => 'rch', 'RcHm_v2.0_Chr7g0201481' => 'rch', 'Rhsim01G0148600' => 'rsi', 'Rhsim05G0194400' => 'rsi', 'Rhsim07G0000700' => 'rsi', 'Rhsim07G0000800' => 'rsi', 'Rhsim07G0027900' => 'rsi', 'Rhsim09G0149500' => 'rsi', 'RhsimUnG0186900' => 'rsi', 'Sabra01G0089900' => 'sbr', 'Sabra02G0114700' => 'sbr', 'Sabra02G0116300' => 'sbr', 'Sabra03G0080100' => 'sbr', 'Sabra08G0024300' => 'sbr', 'Sabra10G0174300' => 'sbr', 'Sabra14G0048900' => 'sbr', 'Sabra14G0076500' => 'sbr', 'SalBow5G2513' => 'sbo', 'Sc01g0002300' => 'sci', 'Sc01g0004450' => 'sci', 'Sc06g0001680' => 'sci', 'Sc23g0003580' => 'sci', 'Sed0000913' => 'sed', 'Sed0001655' => 'sed', 'Sed0007745' => 'sed', 'Sed0010951' => 'sed', 'Sed0017599' => 'sed', 'Sed0021405' => 'sed', 'Sed0022810' => 'sed', 'SEGI_07099' => 'sgi', 'SEGI_11931' => 'sgi', 'SEGI_13187' => 'sgi', 'SEGI_29958' => 'sgi', 'SEGI_36351' => 'sgi', 'SGA_v2.0_scaffold126G33770' => 'sas', 'SGA_v2.0_scaffold153G37003' => 'sas', 'SGA_v2.0_scaffold2G01359' => 'sas', 'SGA_v2.0_scaffold5G03064' => 'sas', 'SGA_v2.0_scaffold95G28903' => 'sas', 'SHI12701' => 'shi', 'SHI26410' => 'shi', 'SHI38997' => 'shi', 'SHI53759' => 'shi', 'SHI53886' => 'shi', 'SHI54714' => 'shi', 'SMO011G0041' => 'smo', 'SMO146G0251' => 'smo', 'SMO160G0004' => 'smo', 'SMO174G0057' => 'smo', 'SMO244G0089' => 'smo', 'SMO296G0011' => 'smo', 'Solyc01g091280.3' => 'sly', 'Solyc05g047610.3' => 'sly', 'Solyc05g047640.3' => 'sly', 'Solyc05g055630.3' => 'sly', 'Solyc10g018160.2' => 'sly', 'Solyc10g084820.2' => 'sly', 'Solyc10g086565.2' => 'sly', 'Sopen01g037030' => 'spe', 'Sopen05g027920' => 'spe', 'Sopen05g034070' => 'spe', 'Sopen10g007260' => 'spe', 'Sopen10g034260' => 'spe', 'Sopen10g035950' => 'spe', 'Sp3g07710' => 'spa', 'Sp4g27420' => 'spa', 'Sp5g02450' => 'spa', 'Sp6g01280' => 'spa', 'Sp6g38480' => 'spa', 'Sp7g20780' => 'spa', 'TAR374G1413' => 'tar', 'TAR623G1777' => 'tar', 'TAR629G2370' => 'tar', 'TAR633G1759' => 'tar', 'TAR636G3387' => 'tar', 'THA.LOC104802447' => 'tha', 'THA.LOC104813916' => 'tha', 'THA.LOC104816423' => 'tha', 'THA.LOC104817246' => 'tha', 'THA.LOC104825895' => 'tha', 'Thecc.01G335200' => 'tca', 'Thecc.01G377400' => 'tca', 'Thecc.03G262200' => 'tca', 'Thecc.05G036800' => 'tca', 'Thecc.10G080500' => 'tca', 'Thecc.10G080800' => 'tca', 'Thhalv10001560m.g' => 'esa', 'Thhalv10006120m.g' => 'esa', 'Thhalv10014375m.g' => 'esa', 'Thhalv10021264m.g' => 'esa', 'Thhalv10028856m.g' => 'esa', 'TPR.G1914' => 'tpr', 'TPR.G4757' => 'tpr', 'TPR.G5595' => 'tpr', 'TWI14G0952' => 'twi', 'TWI14G1307' => 'twi', 'TWI38G2143' => 'twi', 'TWI59G0826' => 'twi', 'TWI77G0527' => 'twi', 'TWI81G0150' => 'twi', 'unitig_21.g21018' => 'ugi', 'unitig_26.g9725' => 'ugi', 'unitig_744.g24653' => 'ugi', 'unitig_749.g13778' => 'ugi', 'unitig_899.g15035' => 'ugi', 'vmacro04296' => 'vma', 'vmacro04852' => 'vma', 'vmacro13404' => 'vma', 'vmacro20169' => 'vma', 'vmacro21014' => 'vma', 'VMungo0331G0237' => 'vmu', 'VMungo0331G0706' => 'vmu', 'VMungo0331G1361' => 'vmu', 'VMungo0331G1489' => 'vmu', 'VMungo0540G1037' => 'vmu', 'VMungo0720G2487' => 'vmu', 'VMungo0720G2721' => 'vmu', 'Zm00001eb086860' => 'zma', 'Zm00001eb104760' => 'zma', 'Zm00001eb148220' => 'zma', 'Zm00001eb259030' => 'zma', 'Zm00001eb289590' => 'zma', 'Zm00001eb420150' => 'zma' ) $gf_id = 'HOM05D000968' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000968' ) $data_identifier = 'HOM05D000968' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 19, 'bol' => (int) 9, 'bra' => (int) 12, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 5, 'ccan' => (int) 7, 'cde' => (int) 5, 'cfa' => (int) 8, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 4, 'dca' => (int) 5, 'din' => (int) 5, 'dzi' => (int) 12, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 25, 'fve' => (int) 5, 'gma' => (int) 9, 'ghi' => (int) 18, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 7, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 5, 'sun' => (int) 2, 'lal' => (int) 9, 'lja' => (int) 5, 'lonja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 9, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 2, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 3, 'stu' => (int) 6, 'pvu' => (int) 4, 'ptr' => (int) 8, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 3, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 1, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 5, 'sas' => (int) 5, 'shi' => (int) 6, 'smo' => (int) 6, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 3, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420150' $species_info = array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ) $local_species = 'oeu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000968', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p31690' => 'bna', 'A03p36040' => 'bna', 'A03p53730' => 'bna', 'A04p01410' => 'bna', 'A05p05420' => 'bna', 'A05p39630' => 'bna', 'A05p39640' => 'bna', 'A09p00970' => 'bna', 'A09p53060' => 'bna', 'A10p31890' => 'bna', 'Aa31LG10G15040' => 'aar', 'Aa31LG1G21090' => 'aar', 'Aa31LG1G26900' => 'aar', 'Aa31LG3G1820' => 'aar', 'Aa31LG5G1100' => 'aar', 'Aa31LG6G4740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2265' => 'aag', 'Actinidia07998' => 'ach', 'Actinidia11266' => 'ach', 'Actinidia12682' => 'ach', 'Actinidia26479' => 'ach', 'Actinidia31406' => 'ach', 'Actinidia32437' => 'ach', 'Actinidia38862' => 'ach', 'Ah.05g174230' => 'amhyb', 'Ah.05g179070' => 'amhyb', 'Ah.05g179090' => 'amhyb', 'Ah.12g059950' => 'amhyb', 'AL3G20480' => 'aly', 'AL4G44520' => 'aly', 'AL5G43110' => 'aly', 'AL6G13890' => 'aly', 'AL6G52620' => 'aly', 'AL7G30830' => 'aly', 'Aqoxy1G00899' => 'aox', 'Aqoxy5G04333' => 'aox', 'Aqoxy7G00641' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3IZ0NN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4EF6AW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W9P8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79GA3M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C43NQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFCU6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G95YVJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCHK29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LU1UG8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX91RN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGB4B1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8DA0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9H7JI' => 'arhy', 'AT3G09320' => 'ath', 'AT3G60800' => 'ath', 'AT4G00840' => 'ath', 'AT4G22750' => 'ath', 'AT5G04270' => 'ath', 'ATR0090G003' => 'atr', 'ATR0559G349' => 'atr', 'ATR0680G261' => 'atr', 'ATR0810G048' => 'atr', 'Atru.chr12.831' => 'acertr', 'Atru.chr5.303' => 'acertr', 'Atru.chr5.748' => 'acertr', 'Atru.chr8.1999' => 'acertr', 'Atru.chr9.1436' => 'acertr', 'AUR62004211' => 'cqu', 'AUR62004548' => 'cqu', 'AUR62013637' => 'cqu', 'AUR62022662' => 'cqu', 'AUR62025777' => 'cqu', 'AUR62042386' => 'cqu', 'BcaB01g02310' => 'bca', 'BcaB01g06062' => 'bca', 'BcaB02g08975' => 'bca', 'BcaB02g08980' => 'bca', 'BcaC01g04228' => 'bca', 'BcaC01g06830' => 'bca', 'BcaC02g10186' => 'bca', 'BcaC02g12214' => 'bca', 'BcaC04g24101' => 'bca', 'BcaC05g29520' => 'bca', 'BcaC05g29661' => 'bca', 'BcaC06g32130' => 'bca', 'BcaC06g32131' => 'bca', 'BcaC07g40601' => 'bca', 'BcaC07g42641' => 'bca', 'BcaNung01038' => 'bca', 'BcaNung01676' => 'bca', 'BcaNung02480' => 'bca', 'BcaNung07376' => 'bca', 'BolC3t16146H' => 'bol', 'BolC3t16637H' => 'bol', 'BolC4t22257H' => 'bol', 'BolC4t24728H' => 'bol', 'BolC5t34517H' => 'bol', 'BolC7t45703H' => 'bol', 'BolC8t51166H' => 'bol', 'BolC9t53038H' => 'bol', 'BolC9t60000H' => 'bol', 'BraA01t01345Z' => 'bra', 'BraA01t01346Z' => 'bra', 'BraA01t01348Z' => 'bra', 'BraA03t12347Z' => 'bra', 'BraA03t12775Z' => 'bra', 'BraA03t14439Z' => 'bra', 'BraA04t15860Z' => 'bra', 'BraA05t19511Z' => 'bra', 'BraA05t22746Z' => 'bra', 'BraA09t35767Z' => 'bra', 'BraA09t40732Z' => 'bra', 'BraA10t45233Z' => 'bra', 'C03p38720' => 'bna', 'C03p43680' => 'bna', 'C04p06350' => 'bna', 'C04p31800' => 'bna', 'C05p58680' => 'bna', 'C07p52110' => 'bna', 'C08p35760' => 'bna', 'C09p01050' => 'bna', 'C09p72600' => 'bna', 'CAN.G106.2' => 'can', 'CAN.G1482.1' => 'can', 'CAN.G324.12' => 'can', 'CAN.G388.20' => 'can', 'CAN.G412.7' => 'can', 'CAN.G694.32' => 'can', 'CAN.G92.12' => 'can', 'CANSAT11G2353' => 'cansat', 'CANSAT21G1398' => 'cansat', 'CANSAT56G2456' => 'cansat', 'CANSAT56G3031' => 'cansat', 'CANSAT56G4539' => 'cansat', 'CARHR083680' => 'chi', 'CARHR171190' => 'chi', 'CARHR209010' => 'chi', 'CARHR229680' => 'chi', 'CARHR249490' => 'chi', 'Carub.0003s0844' => 'cru', 'Carub.0005s2755' => 'cru', 'Carub.0006s0322' => 'cru', 'Carub.0006s3586' => 'cru', 'Carub.0007s1855' => 'cru', 'Ca_07808_v3' => 'car', 'Ca_09535_v3' => 'car', 'Ca_10548_v3' => 'car', 'Ca_19913_v3' => 'car', 'Ca_19916_v3' => 'car', 'Ca_19975_v3' => 'car', 'CBR_g22876' => 'cbr', 'CBR_g22879' => 'cbr', 'CBR_g38491' => 'cbr', 'CBR_g54185' => 'cbr', 'CBR_g54190' => 'cbr', 'Cc02_g11020' => 'ccan', 'Cc02_g23920' => 'ccan', 'Cc02_g39860' => 'ccan', 'Cc02_g39870' => 'ccan', 'Cc03_g06760' => 'ccan', 'Cc06_g02450' => 'ccan', 'Cc09_g09450' => 'ccan', 'CDE02G1959' => 'cde', 'CDE04G0600' => 'cde', 'CDE07G1996' => 'cde', 'CDE07G2078' => 'cde', 'CDE11G0611' => 'cde', 'Cfa001683' => 'cfa', 'Cfa001734' => 'cfa', 'Cfa001737' => 'cfa', 'Cfa003751' => 'cfa', 'Cfa012019' => 'cfa', 'Cfa017353' => 'cfa', 'Cfa017732' => 'cfa', 'Cfa022464' => 'cfa', 'Ciclev10012400m.g' => 'ccl', 'Ciclev10021242m.g' => 'ccl', 'Ciclev10021302m.g' => 'ccl', 'Ciclev10021463m.g' => 'ccl', 'Ciclev10032359m.g' => 'ccl', 'CiPaw.01G081000' => 'cil', 'CiPaw.01G262500' => 'cil', 'CiPaw.01G269800' => 'cil', 'CiPaw.02G168400' => 'cil', 'CiPaw.05G119500' => 'cil', 'CiPaw.11G147300' => 'cil', 'ClCG01G003630' => 'cla', 'ClCG05G000510' => 'cla', 'ClCG05G002300' => 'cla', 'ClCG08G007650' => 'cla', 'ClCG10G021250' => 'cla', 'COL.COLO4_06218' => 'col', 'COL.COLO4_12538' => 'col', 'COL.COLO4_14775' => 'col', 'COL.COLO4_23875' => 'col', 'Cpa.g.sc141.16' => 'cpa', 'Cpa.g.sc169.16' => 'cpa', 'Cpa.g.sc244.4' => 'cpa', 'Cpa.g.sc244.5' => 'cpa', 'Cpa.g.sc29.87' => 'cpa', 'Cpa.g.sc53.115' => 'cpa', 'Cre03.g207502' => 'cre', 'Cre06.g277000' => 'cre', 'Cre09.g394050' => 'cre', 'CsaV3_3G007680' => 'csa', 'CsaV3_3G009710' => 'csa', 'CsaV3_3G034790' => 'csa', 'CsaV3_5G003750' => 'csa', 'CsaV3_6G036620' => 'csa', 'CSS0002288' => 'camsi', 'CSS0011250' => 'camsi', 'CSS0021619' => 'camsi', 'CSS0046701' => 'camsi', 'DCAR_006420' => 'dca', 'DCAR_006865' => 'dca', 'DCAR_008558' => 'dca', 'DCAR_028754' => 'dca', 'DCAR_028755' => 'dca', 'Dinv31218' => 'din', 'Dinv32371' => 'din', 'Dinv34250' => 'din', 'Dinv37156' => 'din', 'Dinv43704' => 'din', 'Duzib093G1811' => 'dzi', 'Duzib106G1622' => 'dzi', 'Duzib114G0504' => 'dzi', 'Duzib128G0338' => 'dzi', 'Duzib128G1577' => 'dzi', 'Duzib133G0104' => 'dzi', 'Duzib133G1080' => 'dzi', 'Duzib138G0324' => 'dzi', 'Duzib138G0394' => 'dzi', 'Duzib205G0122' => 'dzi', 'Duzib268G1020' => 'dzi', 'Duzib268G1359' => 'dzi', 'ECA232G3929' => 'eca', 'ECA236G2210' => 'eca', 'ECA236G2287' => 'eca', 'ECA240G4568' => 'eca', 'ECA247G0894' => 'eca', 'EL10Ac1g00200' => 'bvu', 'EL10Ac1g00886' => 'bvu', 'EL10As1g23091' => 'bvu', 'EL10As1g23092' => 'bvu', 'Eucgr.A01284' => 'egr', 'Eucgr.A01285' => 'egr', 'Eucgr.D02456' => 'egr', 'Eucgr.E00018' => 'egr', 'Eucgr.E01439' => 'egr', 'Eucgr.G02859' => 'egr', 'FAN01G0168' => 'fan', 'FAN01G0453' => 'fan', 'FAN01G2761' => 'fan', 'FAN02G1239' => 'fan', 'FAN03G0645' => 'fan', 'FAN03G2707' => 'fan', 'FAN03G2978' => 'fan', 'FAN04G0227' => 'fan', 'FAN06G0091' => 'fan', 'FAN06G1418' => 'fan', 'FAN06G1512' => 'fan', 'FAN06G1986' => 'fan', 'FAN06G2905' => 'fan', 'FAN06G4325' => 'fan', 'FAN08G0033' => 'fan', 'FAN09G0642' => 'fan', 'FAN10G1763' => 'fan', 'FAN10G2026' => 'fan', 'FAN10G2513' => 'fan', 'FAN10G3402' => 'fan', 'FAN10G3564' => 'fan', 'FAN10G3987' => 'fan', 'FAN13G1490' => 'fan', 'FAN14G5857' => 'fan', 'FAN18G1188' => 'fan', 'FvH4_5g00750' => 'fve', 'FvH4_6g13410' => 'fve', 'FvH4_7g11740' => 'fve', 'FvH4_7g17410' => 'fve', 'FvH4_7g18860' => 'fve', 'Glyma.01G099100' => 'gma', 'Glyma.01G142300' => 'gma', 'Glyma.03G025500' => 'gma', 'Glyma.03G069700' => 'gma', 'Glyma.03G260000' => 'gma', 'Glyma.09G269800' => 'gma', 'Glyma.10G208700' => 'gma', 'Glyma.18G220400' => 'gma', 'Glyma.20G182000' => 'gma', 'Gohir.A01G221726' => 'ghi', 'Gohir.A07G134600' => 'ghi', 'Gohir.A07G146000' => 'ghi', 'Gohir.A08G173900' => 'ghi', 'Gohir.A09G194900' => 'ghi', 'Gohir.A10G204100' => 'ghi', 'Gohir.A11G080600' => 'ghi', 'Gohir.A11G327500' => 'ghi', 'Gohir.A12G101800' => 'ghi', 'Gohir.D01G211200' => 'ghi', 'Gohir.D07G139200' => 'ghi', 'Gohir.D07G152100' => 'ghi', 'Gohir.D08G192600' => 'ghi', 'Gohir.D09G189200' => 'ghi', 'Gohir.D10G212000' => 'ghi', 'Gohir.D11G085200' => 'ghi', 'Gohir.D11G346400' => 'ghi', 'Gohir.D12G104800' => 'ghi', 'Gorai.001G151300' => 'gra', 'Gorai.001G174100' => 'gra', 'Gorai.002G257000' => 'gra', 'Gorai.004G202600' => 'gra', 'Gorai.007G090900' => 'gra', 'Gorai.007G376700' => 'gra', 'Gorai.008G114100' => 'gra', 'Gorai.011G237900' => 'gra', 'GSVIVG01005450001' => 'vvi', 'GSVIVG01016232001' => 'vvi', 'GSVIVG01026157001' => 'vvi', 'GSVIVG01027419001' => 'vvi', 'GSVIVG01027631001' => 'vvi', 'GSVIVG01034143001' => 'vvi', 'HanXRQChr03g0093921' => 'han', 'HanXRQChr04g0120001' => 'han', 'HanXRQChr04g0122561' => 'han', 'HanXRQChr09g0246851' => 'han', 'HanXRQChr10g0293311' => 'han', 'HanXRQChr13g0425231' => 'han', 'HanXRQChr16g0532571' => 'han', 'Haze_09050' => 'cav', 'Haze_15715' => 'cav', 'Haze_15716' => 'cav', 'Haze_16803' => 'cav', 'Haze_16850' => 'cav', 'Hma1.2p1_0301F.1_g118655' => 'hma', 'Hma1.2p1_0309F.1_g120590' => 'hma', 'Hma1.2p1_0936F.1_g238900' => 'hma', 'Hma1.2p1_3552F.1_g336740' => 'hma', 'HPP92_003520' => 'vpl', 'HPP92_006628' => 'vpl', 'HPP92_006645' => 'vpl', 'HPP92_014669' => 'vpl', 'HPP92_015077' => 'vpl', 'Hund16742' => 'sun', 'Hund17022' => 'sun', 'Lalb_Chr02g0152131' => 'lal', 'Lalb_Chr05g0225371' => 'lal', 'Lalb_Chr07g0189841' => 'lal', 'Lalb_Chr07g0192961' => 'lal', 'Lalb_Chr12g0208221' => 'lal', 'Lalb_Chr13g0291211' => 'lal', 'Lalb_Chr13g0291781' => 'lal', 'Lalb_Chr18g0044651' => 'lal', 'Lalb_Chr21g0313731' => 'lal', 'Lj1g0022533' => 'lja', 'Lj2A18T50' => 'lonja', 'Lj2A92G93' => 'lonja', 'Lj3A965T73' => 'lonja', 'Lj3g0000673' => 'lja', 'Lj3g0002666' => 'lja', 'Lj4g0016985' => 'lja', 'Lj5g0003625' => 'lja', 'Lj7A529G36' => 'lonja', 'Lj9A569T49' => 'lonja', 'Lj9A604T63' => 'lonja', 'Lsat_1_v5_gn_3_132060' => 'lsa', 'Lsat_1_v5_gn_4_68941' => 'lsa', 'Lsat_1_v5_gn_5_95580' => 'lsa', 'Lsat_1_v5_gn_7_161' => 'lsa', 'Lsat_1_v5_gn_7_7041' => 'lsa', 'Lsat_1_v5_gn_9_33481' => 'lsa', 'Lsat_1_v5_gn_9_68260' => 'lsa', 'Manes.01G073100' => 'mes', 'Manes.01G266300' => 'mes', 'Manes.02G033300' => 'mes', 'Manes.05G017900' => 'mes', 'Manes.05G046100' => 'mes', 'Manes.08G080900' => 'mes', 'Manes.10G049400' => 'mes', 'Mapoly0009s0186' => 'mpo', 'Mapoly0036s0118' => 'mpo', 'Mapoly0101s0046' => 'mpo', 'MBI04_g30218_MAGBIO' => 'mbi', 'MBI04_g35564_MAGBIO' => 'mbi', 'MBI12_g34011_MAGBIO' => 'mbi', 'MBI14_g04655_MAGBIO' => 'mbi', 'MCO07G653' => 'mco', 'MCO10G173' => 'mco', 'MD01G1087100' => 'mdo', 'MD01G1104200' => 'mdo', 'MD02G1205100' => 'mdo', 'MD04G1079200' => 'mdo', 'MD04G1131400' => 'mdo', 'MD07G1121600' => 'mdo', 'MD07G1157300' => 'mdo', 'MD07G1171000' => 'mdo', 'MD12G1144500' => 'mdo', 'Medtr1g094610' => 'mtr', 'Medtr4g021795' => 'mtr', 'Medtr4g023760' => 'mtr', 'Medtr7g118050' => 'mtr', 'MELO3C005582.2' => 'cme', 'MELO3C005989.2' => 'cme', 'MELO3C006192.2' => 'cme', 'MELO3C009248.2' => 'cme', 'MELO3C019817.2' => 'cme', 'Migut.B01625' => 'egut', 'Migut.B01915' => 'egut', 'Migut.F01721' => 'egut', 'Migut.J00314' => 'egut', 'MSTRG.20742' => 'ama', 'MSTRG.8134' => 'ama', 'Nitab4.5_0000096g0010' => 'nta', 'Nitab4.5_0000202g0030' => 'nta', 'Nitab4.5_0000216g0370' => 'nta', 'Nitab4.5_0000457g0230' => 'nta', 'Nitab4.5_0001702g0170' => 'nta', 'Nitab4.5_0003607g0010' => 'nta', 'Nitab4.5_0004917g0020' => 'nta', 'Nitab4.5_0007059g0010' => 'nta', 'Nitab4.5_0007184g0010' => 'nta', 'Nitab4.5_0007346g0020' => 'nta', 'Nn1g00410' => 'nnu', 'Nn1g01252' => 'nnu', 'Nn2g11168' => 'nnu', 'Nn2g13403' => 'nnu', 'Nn2g13760' => 'nnu', 'Nn4g26380' => 'nnu', 'Oeu000806.2' => 'oeu', 'Oeu005788.1' => 'oeu', 'Oeu006900.3' => 'oeu', 'Oeu007797.1' => 'oeu', 'Oeu011932.1' => 'oeu', 'Oeu022739.1' => 'oeu', 'Oeu037918.1' => 'oeu', 'Oeu055490.2' => 'oeu', 'Os01g0844400' => 'osa', 'Os02g0819100' => 'osa', 'Os03g0804300' => 'osa', 'Os05g0458000' => 'osa', 'Os07g0467800' => 'osa', 'Os12g0602200' => 'osa', 'Peaxi162Scf00013g03444' => 'pax', 'Peaxi162Scf00094g01120' => 'pax', 'Peaxi162Scf00191g01211' => 'pax', 'Peaxi162Scf00238g01110' => 'pax', 'Peaxi162Scf00330g00719' => 'pax', 'Peaxi162Scf00627g00018' => 'pax', 'PGR031G2686' => 'pgr', 'PGR042G0809' => 'pgr', 'PGR142G0193' => 'pgr', 'PGSC0003DMG400011066' => 'stu', 'PGSC0003DMG400012041' => 'stu', 'PGSC0003DMG400013678' => 'stu', 'PGSC0003DMG400023477' => 'stu', 'PGSC0003DMG400025956' => 'stu', 'PGSC0003DMG401019151' => 'stu', 'Phvul.006G116400' => 'pvu', 'Phvul.007G097300' => 'pvu', 'Phvul.010G015000' => 'pvu', 'Phvul.010G083900' => 'pvu', 'Potri.001G117100' => 'ptr', 'Potri.002G147300' => 'ptr', 'Potri.003G115600' => 'ptr', 'Potri.006G087400' => 'ptr', 'Potri.010G226100' => 'ptr', 'Potri.014G069200' => 'ptr', 'Potri.014G104000' => 'ptr', 'Potri.016G100200' => 'ptr', 'Pp3c10_20450' => 'ppa', 'Pp3c1_42400' => 'ppa', 'Pp3c3_24390' => 'ppa', 'Pp3c3_2860' => 'ppa', 'PRCOL_00003193' => 'pco', 'Prupe.2G144500' => 'ppe', 'Prupe.2G195700' => 'ppe', 'Prupe.2G209800' => 'ppe', 'Prupe.5G080000' => 'ppe', 'Prupe.6G257900' => 'ppe', 'Psat3g001160' => 'psa', 'Psat6g181880' => 'psa', 'Psat7g233720' => 'psa', 'PSO063G7587' => 'pso', 'PSO339G2145' => 'pso', 'PSO339G3369' => 'pso', 'PSO478G2747' => 'pso', 'PSO513G0140' => 'pso', 'PSO782G1614' => 'pso', 'PSO782G4889' => 'pso', 'PSO782G5485' => 'pso', 'PSO801G0241' => 'pso', 'QL07p048854' => 'qlo', 'QL08p046745' => 'qlo', 'QL08p052606' => 'qlo', 'QL08p053414' => 'qlo', 'QL08p054868' => 'qlo', 'RcHm_v2.0_Chr1g0350251' => 'rch', 'RcHm_v2.0_Chr1g0360851' => 'rch', 'RcHm_v2.0_Chr1g0362791' => 'rch', 'RcHm_v2.0_Chr3g0466281' => 'rch', 'RcHm_v2.0_Chr7g0201481' => 'rch', 'Rhsim01G0148600' => 'rsi', 'Rhsim05G0194400' => 'rsi', 'Rhsim07G0000700' => 'rsi', 'Rhsim07G0000800' => 'rsi', 'Rhsim07G0027900' => 'rsi', 'Rhsim09G0149500' => 'rsi', 'RhsimUnG0186900' => 'rsi', 'Sabra01G0089900' => 'sbr', 'Sabra02G0114700' => 'sbr', 'Sabra02G0116300' => 'sbr', 'Sabra03G0080100' => 'sbr', 'Sabra08G0024300' => 'sbr', 'Sabra10G0174300' => 'sbr', 'Sabra14G0048900' => 'sbr', 'Sabra14G0076500' => 'sbr', 'SalBow5G2513' => 'sbo', 'Sc01g0002300' => 'sci', 'Sc01g0004450' => 'sci', 'Sc06g0001680' => 'sci', 'Sc23g0003580' => 'sci', 'Sed0000913' => 'sed', 'Sed0001655' => 'sed', 'Sed0007745' => 'sed', 'Sed0010951' => 'sed', 'Sed0017599' => 'sed', 'Sed0021405' => 'sed', 'Sed0022810' => 'sed', 'SEGI_07099' => 'sgi', 'SEGI_11931' => 'sgi', 'SEGI_13187' => 'sgi', 'SEGI_29958' => 'sgi', 'SEGI_36351' => 'sgi', 'SGA_v2.0_scaffold126G33770' => 'sas', 'SGA_v2.0_scaffold153G37003' => 'sas', 'SGA_v2.0_scaffold2G01359' => 'sas', 'SGA_v2.0_scaffold5G03064' => 'sas', 'SGA_v2.0_scaffold95G28903' => 'sas', 'SHI12701' => 'shi', 'SHI26410' => 'shi', 'SHI38997' => 'shi', 'SHI53759' => 'shi', 'SHI53886' => 'shi', 'SHI54714' => 'shi', 'SMO011G0041' => 'smo', 'SMO146G0251' => 'smo', 'SMO160G0004' => 'smo', 'SMO174G0057' => 'smo', 'SMO244G0089' => 'smo', 'SMO296G0011' => 'smo', 'Solyc01g091280.3' => 'sly', 'Solyc05g047610.3' => 'sly', 'Solyc05g047640.3' => 'sly', 'Solyc05g055630.3' => 'sly', 'Solyc10g018160.2' => 'sly', 'Solyc10g084820.2' => 'sly', 'Solyc10g086565.2' => 'sly', 'Sopen01g037030' => 'spe', 'Sopen05g027920' => 'spe', 'Sopen05g034070' => 'spe', 'Sopen10g007260' => 'spe', 'Sopen10g034260' => 'spe', 'Sopen10g035950' => 'spe', 'Sp3g07710' => 'spa', 'Sp4g27420' => 'spa', 'Sp5g02450' => 'spa', 'Sp6g01280' => 'spa', 'Sp6g38480' => 'spa', 'Sp7g20780' => 'spa', 'TAR374G1413' => 'tar', 'TAR623G1777' => 'tar', 'TAR629G2370' => 'tar', 'TAR633G1759' => 'tar', 'TAR636G3387' => 'tar', 'THA.LOC104802447' => 'tha', 'THA.LOC104813916' => 'tha', 'THA.LOC104816423' => 'tha', 'THA.LOC104817246' => 'tha', 'THA.LOC104825895' => 'tha', 'Thecc.01G335200' => 'tca', 'Thecc.01G377400' => 'tca', 'Thecc.03G262200' => 'tca', 'Thecc.05G036800' => 'tca', 'Thecc.10G080500' => 'tca', 'Thecc.10G080800' => 'tca', 'Thhalv10001560m.g' => 'esa', 'Thhalv10006120m.g' => 'esa', 'Thhalv10014375m.g' => 'esa', 'Thhalv10021264m.g' => 'esa', 'Thhalv10028856m.g' => 'esa', 'TPR.G1914' => 'tpr', 'TPR.G4757' => 'tpr', 'TPR.G5595' => 'tpr', 'TWI14G0952' => 'twi', 'TWI14G1307' => 'twi', 'TWI38G2143' => 'twi', 'TWI59G0826' => 'twi', 'TWI77G0527' => 'twi', 'TWI81G0150' => 'twi', 'unitig_21.g21018' => 'ugi', 'unitig_26.g9725' => 'ugi', 'unitig_744.g24653' => 'ugi', 'unitig_749.g13778' => 'ugi', 'unitig_899.g15035' => 'ugi', 'vmacro04296' => 'vma', 'vmacro04852' => 'vma', 'vmacro13404' => 'vma', 'vmacro20169' => 'vma', 'vmacro21014' => 'vma', 'VMungo0331G0237' => 'vmu', 'VMungo0331G0706' => 'vmu', 'VMungo0331G1361' => 'vmu', 'VMungo0331G1489' => 'vmu', 'VMungo0540G1037' => 'vmu', 'VMungo0720G2487' => 'vmu', 'VMungo0720G2721' => 'vmu', 'Zm00001eb086860' => 'zma', 'Zm00001eb104760' => 'zma', 'Zm00001eb148220' => 'zma', 'Zm00001eb259030' => 'zma', 'Zm00001eb289590' => 'zma', 'Zm00001eb420150' => 'zma' ), 'gf_id' => 'HOM05D000968', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000968' ), 'data_identifier' => 'HOM05D000968', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000968', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p31690' => 'bna', 'A03p36040' => 'bna', 'A03p53730' => 'bna', 'A04p01410' => 'bna', 'A05p05420' => 'bna', 'A05p39630' => 'bna', 'A05p39640' => 'bna', 'A09p00970' => 'bna', 'A09p53060' => 'bna', 'A10p31890' => 'bna', 'Aa31LG10G15040' => 'aar', 'Aa31LG1G21090' => 'aar', 'Aa31LG1G26900' => 'aar', 'Aa31LG3G1820' => 'aar', 'Aa31LG5G1100' => 'aar', 'Aa31LG6G4740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2265' => 'aag', 'Actinidia07998' => 'ach', 'Actinidia11266' => 'ach', 'Actinidia12682' => 'ach', 'Actinidia26479' => 'ach', 'Actinidia31406' => 'ach', 'Actinidia32437' => 'ach', 'Actinidia38862' => 'ach', 'Ah.05g174230' => 'amhyb', 'Ah.05g179070' => 'amhyb', 'Ah.05g179090' => 'amhyb', 'Ah.12g059950' => 'amhyb', 'AL3G20480' => 'aly', 'AL4G44520' => 'aly', 'AL5G43110' => 'aly', 'AL6G13890' => 'aly', 'AL6G52620' => 'aly', 'AL7G30830' => 'aly', 'Aqoxy1G00899' => 'aox', 'Aqoxy5G04333' => 'aox', 'Aqoxy7G00641' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3IZ0NN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4EF6AW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W9P8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79GA3M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C43NQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFCU6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G95YVJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCHK29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LU1UG8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX91RN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGB4B1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8DA0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9H7JI' => 'arhy', 'AT3G09320' => 'ath', 'AT3G60800' => 'ath', 'AT4G00840' => 'ath', 'AT4G22750' => 'ath', 'AT5G04270' => 'ath', 'ATR0090G003' => 'atr', 'ATR0559G349' => 'atr', 'ATR0680G261' => 'atr', 'ATR0810G048' => 'atr', 'Atru.chr12.831' => 'acertr', 'Atru.chr5.303' => 'acertr', 'Atru.chr5.748' => 'acertr', 'Atru.chr8.1999' => 'acertr', 'Atru.chr9.1436' => 'acertr', 'AUR62004211' => 'cqu', 'AUR62004548' => 'cqu', 'AUR62013637' => 'cqu', 'AUR62022662' => 'cqu', 'AUR62025777' => 'cqu', 'AUR62042386' => 'cqu', 'BcaB01g02310' => 'bca', 'BcaB01g06062' => 'bca', 'BcaB02g08975' => 'bca', 'BcaB02g08980' => 'bca', 'BcaC01g04228' => 'bca', 'BcaC01g06830' => 'bca', 'BcaC02g10186' => 'bca', 'BcaC02g12214' => 'bca', 'BcaC04g24101' => 'bca', 'BcaC05g29520' => 'bca', 'BcaC05g29661' => 'bca', 'BcaC06g32130' => 'bca', 'BcaC06g32131' => 'bca', 'BcaC07g40601' => 'bca', 'BcaC07g42641' => 'bca', 'BcaNung01038' => 'bca', 'BcaNung01676' => 'bca', 'BcaNung02480' => 'bca', 'BcaNung07376' => 'bca', 'BolC3t16146H' => 'bol', 'BolC3t16637H' => 'bol', 'BolC4t22257H' => 'bol', 'BolC4t24728H' => 'bol', 'BolC5t34517H' => 'bol', 'BolC7t45703H' => 'bol', 'BolC8t51166H' => 'bol', 'BolC9t53038H' => 'bol', 'BolC9t60000H' => 'bol', 'BraA01t01345Z' => 'bra', 'BraA01t01346Z' => 'bra', 'BraA01t01348Z' => 'bra', 'BraA03t12347Z' => 'bra', 'BraA03t12775Z' => 'bra', 'BraA03t14439Z' => 'bra', 'BraA04t15860Z' => 'bra', 'BraA05t19511Z' => 'bra', 'BraA05t22746Z' => 'bra', 'BraA09t35767Z' => 'bra', 'BraA09t40732Z' => 'bra', 'BraA10t45233Z' => 'bra', 'C03p38720' => 'bna', 'C03p43680' => 'bna', 'C04p06350' => 'bna', 'C04p31800' => 'bna', 'C05p58680' => 'bna', 'C07p52110' => 'bna', 'C08p35760' => 'bna', 'C09p01050' => 'bna', 'C09p72600' => 'bna', 'CAN.G106.2' => 'can', 'CAN.G1482.1' => 'can', 'CAN.G324.12' => 'can', 'CAN.G388.20' => 'can', 'CAN.G412.7' => 'can', 'CAN.G694.32' => 'can', 'CAN.G92.12' => 'can', 'CANSAT11G2353' => 'cansat', 'CANSAT21G1398' => 'cansat', 'CANSAT56G2456' => 'cansat', 'CANSAT56G3031' => 'cansat', 'CANSAT56G4539' => 'cansat', 'CARHR083680' => 'chi', 'CARHR171190' => 'chi', 'CARHR209010' => 'chi', 'CARHR229680' => 'chi', 'CARHR249490' => 'chi', 'Carub.0003s0844' => 'cru', 'Carub.0005s2755' => 'cru', 'Carub.0006s0322' => 'cru', 'Carub.0006s3586' => 'cru', 'Carub.0007s1855' => 'cru', 'Ca_07808_v3' => 'car', 'Ca_09535_v3' => 'car', 'Ca_10548_v3' => 'car', 'Ca_19913_v3' => 'car', 'Ca_19916_v3' => 'car', 'Ca_19975_v3' => 'car', 'CBR_g22876' => 'cbr', 'CBR_g22879' => 'cbr', 'CBR_g38491' => 'cbr', 'CBR_g54185' => 'cbr', 'CBR_g54190' => 'cbr', 'Cc02_g11020' => 'ccan', 'Cc02_g23920' => 'ccan', 'Cc02_g39860' => 'ccan', 'Cc02_g39870' => 'ccan', 'Cc03_g06760' => 'ccan', 'Cc06_g02450' => 'ccan', 'Cc09_g09450' => 'ccan', 'CDE02G1959' => 'cde', 'CDE04G0600' => 'cde', 'CDE07G1996' => 'cde', 'CDE07G2078' => 'cde', 'CDE11G0611' => 'cde', 'Cfa001683' => 'cfa', 'Cfa001734' => 'cfa', 'Cfa001737' => 'cfa', 'Cfa003751' => 'cfa', 'Cfa012019' => 'cfa', 'Cfa017353' => 'cfa', 'Cfa017732' => 'cfa', 'Cfa022464' => 'cfa', 'Ciclev10012400m.g' => 'ccl', 'Ciclev10021242m.g' => 'ccl', 'Ciclev10021302m.g' => 'ccl', 'Ciclev10021463m.g' => 'ccl', 'Ciclev10032359m.g' => 'ccl', 'CiPaw.01G081000' => 'cil', 'CiPaw.01G262500' => 'cil', 'CiPaw.01G269800' => 'cil', 'CiPaw.02G168400' => 'cil', 'CiPaw.05G119500' => 'cil', 'CiPaw.11G147300' => 'cil', 'ClCG01G003630' => 'cla', 'ClCG05G000510' => 'cla', 'ClCG05G002300' => 'cla', 'ClCG08G007650' => 'cla', 'ClCG10G021250' => 'cla', 'COL.COLO4_06218' => 'col', 'COL.COLO4_12538' => 'col', 'COL.COLO4_14775' => 'col', 'COL.COLO4_23875' => 'col', 'Cpa.g.sc141.16' => 'cpa', 'Cpa.g.sc169.16' => 'cpa', 'Cpa.g.sc244.4' => 'cpa', 'Cpa.g.sc244.5' => 'cpa', 'Cpa.g.sc29.87' => 'cpa', 'Cpa.g.sc53.115' => 'cpa', 'Cre03.g207502' => 'cre', 'Cre06.g277000' => 'cre', 'Cre09.g394050' => 'cre', 'CsaV3_3G007680' => 'csa', 'CsaV3_3G009710' => 'csa', 'CsaV3_3G034790' => 'csa', 'CsaV3_5G003750' => 'csa', 'CsaV3_6G036620' => 'csa', 'CSS0002288' => 'camsi', 'CSS0011250' => 'camsi', 'CSS0021619' => 'camsi', 'CSS0046701' => 'camsi', 'DCAR_006420' => 'dca', 'DCAR_006865' => 'dca', 'DCAR_008558' => 'dca', 'DCAR_028754' => 'dca', 'DCAR_028755' => 'dca', 'Dinv31218' => 'din', 'Dinv32371' => 'din', 'Dinv34250' => 'din', 'Dinv37156' => 'din', 'Dinv43704' => 'din', 'Duzib093G1811' => 'dzi', 'Duzib106G1622' => 'dzi', 'Duzib114G0504' => 'dzi', 'Duzib128G0338' => 'dzi', 'Duzib128G1577' => 'dzi', 'Duzib133G0104' => 'dzi', 'Duzib133G1080' => 'dzi', 'Duzib138G0324' => 'dzi', 'Duzib138G0394' => 'dzi', 'Duzib205G0122' => 'dzi', 'Duzib268G1020' => 'dzi', 'Duzib268G1359' => 'dzi', 'ECA232G3929' => 'eca', 'ECA236G2210' => 'eca', 'ECA236G2287' => 'eca', 'ECA240G4568' => 'eca', 'ECA247G0894' => 'eca', 'EL10Ac1g00200' => 'bvu', 'EL10Ac1g00886' => 'bvu', 'EL10As1g23091' => 'bvu', 'EL10As1g23092' => 'bvu', 'Eucgr.A01284' => 'egr', 'Eucgr.A01285' => 'egr', 'Eucgr.D02456' => 'egr', 'Eucgr.E00018' => 'egr', 'Eucgr.E01439' => 'egr', 'Eucgr.G02859' => 'egr', 'FAN01G0168' => 'fan', 'FAN01G0453' => 'fan', 'FAN01G2761' => 'fan', 'FAN02G1239' => 'fan', 'FAN03G0645' => 'fan', 'FAN03G2707' => 'fan', 'FAN03G2978' => 'fan', 'FAN04G0227' => 'fan', 'FAN06G0091' => 'fan', 'FAN06G1418' => 'fan', 'FAN06G1512' => 'fan', 'FAN06G1986' => 'fan', 'FAN06G2905' => 'fan', 'FAN06G4325' => 'fan', 'FAN08G0033' => 'fan', 'FAN09G0642' => 'fan', 'FAN10G1763' => 'fan', 'FAN10G2026' => 'fan', 'FAN10G2513' => 'fan', 'FAN10G3402' => 'fan', 'FAN10G3564' => 'fan', 'FAN10G3987' => 'fan', 'FAN13G1490' => 'fan', 'FAN14G5857' => 'fan', 'FAN18G1188' => 'fan', 'FvH4_5g00750' => 'fve', 'FvH4_6g13410' => 'fve', 'FvH4_7g11740' => 'fve', 'FvH4_7g17410' => 'fve', 'FvH4_7g18860' => 'fve', 'Glyma.01G099100' => 'gma', 'Glyma.01G142300' => 'gma', 'Glyma.03G025500' => 'gma', 'Glyma.03G069700' => 'gma', 'Glyma.03G260000' => 'gma', 'Glyma.09G269800' => 'gma', 'Glyma.10G208700' => 'gma', 'Glyma.18G220400' => 'gma', 'Glyma.20G182000' => 'gma', 'Gohir.A01G221726' => 'ghi', 'Gohir.A07G134600' => 'ghi', 'Gohir.A07G146000' => 'ghi', 'Gohir.A08G173900' => 'ghi', 'Gohir.A09G194900' => 'ghi', 'Gohir.A10G204100' => 'ghi', 'Gohir.A11G080600' => 'ghi', 'Gohir.A11G327500' => 'ghi', 'Gohir.A12G101800' => 'ghi', 'Gohir.D01G211200' => 'ghi', 'Gohir.D07G139200' => 'ghi', 'Gohir.D07G152100' => 'ghi', 'Gohir.D08G192600' => 'ghi', 'Gohir.D09G189200' => 'ghi', 'Gohir.D10G212000' => 'ghi', 'Gohir.D11G085200' => 'ghi', 'Gohir.D11G346400' => 'ghi', 'Gohir.D12G104800' => 'ghi', 'Gorai.001G151300' => 'gra', 'Gorai.001G174100' => 'gra', 'Gorai.002G257000' => 'gra', 'Gorai.004G202600' => 'gra', 'Gorai.007G090900' => 'gra', 'Gorai.007G376700' => 'gra', 'Gorai.008G114100' => 'gra', 'Gorai.011G237900' => 'gra', 'GSVIVG01005450001' => 'vvi', 'GSVIVG01016232001' => 'vvi', 'GSVIVG01026157001' => 'vvi', 'GSVIVG01027419001' => 'vvi', 'GSVIVG01027631001' => 'vvi', 'GSVIVG01034143001' => 'vvi', 'HanXRQChr03g0093921' => 'han', 'HanXRQChr04g0120001' => 'han', 'HanXRQChr04g0122561' => 'han', 'HanXRQChr09g0246851' => 'han', 'HanXRQChr10g0293311' => 'han', 'HanXRQChr13g0425231' => 'han', 'HanXRQChr16g0532571' => 'han', 'Haze_09050' => 'cav', 'Haze_15715' => 'cav', 'Haze_15716' => 'cav', 'Haze_16803' => 'cav', 'Haze_16850' => 'cav', 'Hma1.2p1_0301F.1_g118655' => 'hma', 'Hma1.2p1_0309F.1_g120590' => 'hma', 'Hma1.2p1_0936F.1_g238900' => 'hma', 'Hma1.2p1_3552F.1_g336740' => 'hma', 'HPP92_003520' => 'vpl', 'HPP92_006628' => 'vpl', 'HPP92_006645' => 'vpl', 'HPP92_014669' => 'vpl', 'HPP92_015077' => 'vpl', 'Hund16742' => 'sun', 'Hund17022' => 'sun', 'Lalb_Chr02g0152131' => 'lal', 'Lalb_Chr05g0225371' => 'lal', 'Lalb_Chr07g0189841' => 'lal', 'Lalb_Chr07g0192961' => 'lal', 'Lalb_Chr12g0208221' => 'lal', 'Lalb_Chr13g0291211' => 'lal', 'Lalb_Chr13g0291781' => 'lal', 'Lalb_Chr18g0044651' => 'lal', 'Lalb_Chr21g0313731' => 'lal', 'Lj1g0022533' => 'lja', 'Lj2A18T50' => 'lonja', 'Lj2A92G93' => 'lonja', 'Lj3A965T73' => 'lonja', 'Lj3g0000673' => 'lja', 'Lj3g0002666' => 'lja', 'Lj4g0016985' => 'lja', 'Lj5g0003625' => 'lja', 'Lj7A529G36' => 'lonja', 'Lj9A569T49' => 'lonja', 'Lj9A604T63' => 'lonja', 'Lsat_1_v5_gn_3_132060' => 'lsa', 'Lsat_1_v5_gn_4_68941' => 'lsa', 'Lsat_1_v5_gn_5_95580' => 'lsa', 'Lsat_1_v5_gn_7_161' => 'lsa', 'Lsat_1_v5_gn_7_7041' => 'lsa', 'Lsat_1_v5_gn_9_33481' => 'lsa', 'Lsat_1_v5_gn_9_68260' => 'lsa', 'Manes.01G073100' => 'mes', 'Manes.01G266300' => 'mes', 'Manes.02G033300' => 'mes', 'Manes.05G017900' => 'mes', 'Manes.05G046100' => 'mes', 'Manes.08G080900' => 'mes', 'Manes.10G049400' => 'mes', 'Mapoly0009s0186' => 'mpo', 'Mapoly0036s0118' => 'mpo', 'Mapoly0101s0046' => 'mpo', 'MBI04_g30218_MAGBIO' => 'mbi', 'MBI04_g35564_MAGBIO' => 'mbi', 'MBI12_g34011_MAGBIO' => 'mbi', 'MBI14_g04655_MAGBIO' => 'mbi', 'MCO07G653' => 'mco', 'MCO10G173' => 'mco', 'MD01G1087100' => 'mdo', 'MD01G1104200' => 'mdo', 'MD02G1205100' => 'mdo', 'MD04G1079200' => 'mdo', 'MD04G1131400' => 'mdo', 'MD07G1121600' => 'mdo', 'MD07G1157300' => 'mdo', 'MD07G1171000' => 'mdo', 'MD12G1144500' => 'mdo', 'Medtr1g094610' => 'mtr', 'Medtr4g021795' => 'mtr', 'Medtr4g023760' => 'mtr', 'Medtr7g118050' => 'mtr', 'MELO3C005582.2' => 'cme', 'MELO3C005989.2' => 'cme', 'MELO3C006192.2' => 'cme', 'MELO3C009248.2' => 'cme', 'MELO3C019817.2' => 'cme', 'Migut.B01625' => 'egut', 'Migut.B01915' => 'egut', 'Migut.F01721' => 'egut', 'Migut.J00314' => 'egut', 'MSTRG.20742' => 'ama', 'MSTRG.8134' => 'ama', 'Nitab4.5_0000096g0010' => 'nta', 'Nitab4.5_0000202g0030' => 'nta', 'Nitab4.5_0000216g0370' => 'nta', 'Nitab4.5_0000457g0230' => 'nta', 'Nitab4.5_0001702g0170' => 'nta', 'Nitab4.5_0003607g0010' => 'nta', 'Nitab4.5_0004917g0020' => 'nta', 'Nitab4.5_0007059g0010' => 'nta', 'Nitab4.5_0007184g0010' => 'nta', 'Nitab4.5_0007346g0020' => 'nta', 'Nn1g00410' => 'nnu', 'Nn1g01252' => 'nnu', 'Nn2g11168' => 'nnu', 'Nn2g13403' => 'nnu', 'Nn2g13760' => 'nnu', 'Nn4g26380' => 'nnu', 'Oeu000806.2' => 'oeu', 'Oeu005788.1' => 'oeu', 'Oeu006900.3' => 'oeu', 'Oeu007797.1' => 'oeu', 'Oeu011932.1' => 'oeu', 'Oeu022739.1' => 'oeu', 'Oeu037918.1' => 'oeu', 'Oeu055490.2' => 'oeu', 'Os01g0844400' => 'osa', 'Os02g0819100' => 'osa', 'Os03g0804300' => 'osa', 'Os05g0458000' => 'osa', 'Os07g0467800' => 'osa', 'Os12g0602200' => 'osa', 'Peaxi162Scf00013g03444' => 'pax', 'Peaxi162Scf00094g01120' => 'pax', 'Peaxi162Scf00191g01211' => 'pax', 'Peaxi162Scf00238g01110' => 'pax', 'Peaxi162Scf00330g00719' => 'pax', 'Peaxi162Scf00627g00018' => 'pax', 'PGR031G2686' => 'pgr', 'PGR042G0809' => 'pgr', 'PGR142G0193' => 'pgr', 'PGSC0003DMG400011066' => 'stu', 'PGSC0003DMG400012041' => 'stu', 'PGSC0003DMG400013678' => 'stu', 'PGSC0003DMG400023477' => 'stu', 'PGSC0003DMG400025956' => 'stu', 'PGSC0003DMG401019151' => 'stu', 'Phvul.006G116400' => 'pvu', 'Phvul.007G097300' => 'pvu', 'Phvul.010G015000' => 'pvu', 'Phvul.010G083900' => 'pvu', 'Potri.001G117100' => 'ptr', 'Potri.002G147300' => 'ptr', 'Potri.003G115600' => 'ptr', 'Potri.006G087400' => 'ptr', 'Potri.010G226100' => 'ptr', 'Potri.014G069200' => 'ptr', 'Potri.014G104000' => 'ptr', 'Potri.016G100200' => 'ptr', 'Pp3c10_20450' => 'ppa', 'Pp3c1_42400' => 'ppa', 'Pp3c3_24390' => 'ppa', 'Pp3c3_2860' => 'ppa', 'PRCOL_00003193' => 'pco', 'Prupe.2G144500' => 'ppe', 'Prupe.2G195700' => 'ppe', 'Prupe.2G209800' => 'ppe', 'Prupe.5G080000' => 'ppe', 'Prupe.6G257900' => 'ppe', 'Psat3g001160' => 'psa', 'Psat6g181880' => 'psa', 'Psat7g233720' => 'psa', 'PSO063G7587' => 'pso', 'PSO339G2145' => 'pso', 'PSO339G3369' => 'pso', 'PSO478G2747' => 'pso', 'PSO513G0140' => 'pso', 'PSO782G1614' => 'pso', 'PSO782G4889' => 'pso', 'PSO782G5485' => 'pso', 'PSO801G0241' => 'pso', 'QL07p048854' => 'qlo', 'QL08p046745' => 'qlo', 'QL08p052606' => 'qlo', 'QL08p053414' => 'qlo', 'QL08p054868' => 'qlo', 'RcHm_v2.0_Chr1g0350251' => 'rch', 'RcHm_v2.0_Chr1g0360851' => 'rch', 'RcHm_v2.0_Chr1g0362791' => 'rch', 'RcHm_v2.0_Chr3g0466281' => 'rch', 'RcHm_v2.0_Chr7g0201481' => 'rch', 'Rhsim01G0148600' => 'rsi', 'Rhsim05G0194400' => 'rsi', 'Rhsim07G0000700' => 'rsi', 'Rhsim07G0000800' => 'rsi', 'Rhsim07G0027900' => 'rsi', 'Rhsim09G0149500' => 'rsi', 'RhsimUnG0186900' => 'rsi', 'Sabra01G0089900' => 'sbr', 'Sabra02G0114700' => 'sbr', 'Sabra02G0116300' => 'sbr', 'Sabra03G0080100' => 'sbr', 'Sabra08G0024300' => 'sbr', 'Sabra10G0174300' => 'sbr', 'Sabra14G0048900' => 'sbr', 'Sabra14G0076500' => 'sbr', 'SalBow5G2513' => 'sbo', 'Sc01g0002300' => 'sci', 'Sc01g0004450' => 'sci', 'Sc06g0001680' => 'sci', 'Sc23g0003580' => 'sci', 'Sed0000913' => 'sed', 'Sed0001655' => 'sed', 'Sed0007745' => 'sed', 'Sed0010951' => 'sed', 'Sed0017599' => 'sed', 'Sed0021405' => 'sed', 'Sed0022810' => 'sed', 'SEGI_07099' => 'sgi', 'SEGI_11931' => 'sgi', 'SEGI_13187' => 'sgi', 'SEGI_29958' => 'sgi', 'SEGI_36351' => 'sgi', 'SGA_v2.0_scaffold126G33770' => 'sas', 'SGA_v2.0_scaffold153G37003' => 'sas', 'SGA_v2.0_scaffold2G01359' => 'sas', 'SGA_v2.0_scaffold5G03064' => 'sas', 'SGA_v2.0_scaffold95G28903' => 'sas', 'SHI12701' => 'shi', 'SHI26410' => 'shi', 'SHI38997' => 'shi', 'SHI53759' => 'shi', 'SHI53886' => 'shi', 'SHI54714' => 'shi', 'SMO011G0041' => 'smo', 'SMO146G0251' => 'smo', 'SMO160G0004' => 'smo', 'SMO174G0057' => 'smo', 'SMO244G0089' => 'smo', 'SMO296G0011' => 'smo', 'Solyc01g091280.3' => 'sly', 'Solyc05g047610.3' => 'sly', 'Solyc05g047640.3' => 'sly', 'Solyc05g055630.3' => 'sly', 'Solyc10g018160.2' => 'sly', 'Solyc10g084820.2' => 'sly', 'Solyc10g086565.2' => 'sly', 'Sopen01g037030' => 'spe', 'Sopen05g027920' => 'spe', 'Sopen05g034070' => 'spe', 'Sopen10g007260' => 'spe', 'Sopen10g034260' => 'spe', 'Sopen10g035950' => 'spe', 'Sp3g07710' => 'spa', 'Sp4g27420' => 'spa', 'Sp5g02450' => 'spa', 'Sp6g01280' => 'spa', 'Sp6g38480' => 'spa', 'Sp7g20780' => 'spa', 'TAR374G1413' => 'tar', 'TAR623G1777' => 'tar', 'TAR629G2370' => 'tar', 'TAR633G1759' => 'tar', 'TAR636G3387' => 'tar', 'THA.LOC104802447' => 'tha', 'THA.LOC104813916' => 'tha', 'THA.LOC104816423' => 'tha', 'THA.LOC104817246' => 'tha', 'THA.LOC104825895' => 'tha', 'Thecc.01G335200' => 'tca', 'Thecc.01G377400' => 'tca', 'Thecc.03G262200' => 'tca', 'Thecc.05G036800' => 'tca', 'Thecc.10G080500' => 'tca', 'Thecc.10G080800' => 'tca', 'Thhalv10001560m.g' => 'esa', 'Thhalv10006120m.g' => 'esa', 'Thhalv10014375m.g' => 'esa', 'Thhalv10021264m.g' => 'esa', 'Thhalv10028856m.g' => 'esa', 'TPR.G1914' => 'tpr', 'TPR.G4757' => 'tpr', 'TPR.G5595' => 'tpr', 'TWI14G0952' => 'twi', 'TWI14G1307' => 'twi', 'TWI38G2143' => 'twi', 'TWI59G0826' => 'twi', 'TWI77G0527' => 'twi', 'TWI81G0150' => 'twi', 'unitig_21.g21018' => 'ugi', 'unitig_26.g9725' => 'ugi', 'unitig_744.g24653' => 'ugi', 'unitig_749.g13778' => 'ugi', 'unitig_899.g15035' => 'ugi', 'vmacro04296' => 'vma', 'vmacro04852' => 'vma', 'vmacro13404' => 'vma', 'vmacro20169' => 'vma', 'vmacro21014' => 'vma', 'VMungo0331G0237' => 'vmu', 'VMungo0331G0706' => 'vmu', 'VMungo0331G1361' => 'vmu', 'VMungo0331G1489' => 'vmu', 'VMungo0540G1037' => 'vmu', 'VMungo0720G2487' => 'vmu', 'VMungo0720G2721' => 'vmu', 'Zm00001eb086860' => 'zma', 'Zm00001eb104760' => 'zma', 'Zm00001eb148220' => 'zma', 'Zm00001eb259030' => 'zma', 'Zm00001eb289590' => 'zma', 'Zm00001eb420150' => 'zma' ) $gf_id = 'HOM05D000968' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000968' ) $data_identifier = 'HOM05D000968' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 19, 'bol' => (int) 9, 'bra' => (int) 12, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 5, 'ccan' => (int) 7, 'cde' => (int) 5, 'cfa' => (int) 8, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 4, 'dca' => (int) 5, 'din' => (int) 5, 'dzi' => (int) 12, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 25, 'fve' => (int) 5, 'gma' => (int) 9, 'ghi' => (int) 18, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 7, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 5, 'sun' => (int) 2, 'lal' => (int) 9, 'lja' => (int) 5, 'lonja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 9, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 2, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 3, 'stu' => (int) 6, 'pvu' => (int) 4, 'ptr' => (int) 8, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 3, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 1, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 5, 'sas' => (int) 5, 'shi' => (int) 6, 'smo' => (int) 6, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 3, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420150' $species_info = array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ) $local_species = 'oeu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000968', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p31690' => 'bna', 'A03p36040' => 'bna', 'A03p53730' => 'bna', 'A04p01410' => 'bna', 'A05p05420' => 'bna', 'A05p39630' => 'bna', 'A05p39640' => 'bna', 'A09p00970' => 'bna', 'A09p53060' => 'bna', 'A10p31890' => 'bna', 'Aa31LG10G15040' => 'aar', 'Aa31LG1G21090' => 'aar', 'Aa31LG1G26900' => 'aar', 'Aa31LG3G1820' => 'aar', 'Aa31LG5G1100' => 'aar', 'Aa31LG6G4740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2265' => 'aag', 'Actinidia07998' => 'ach', 'Actinidia11266' => 'ach', 'Actinidia12682' => 'ach', 'Actinidia26479' => 'ach', 'Actinidia31406' => 'ach', 'Actinidia32437' => 'ach', 'Actinidia38862' => 'ach', 'Ah.05g174230' => 'amhyb', 'Ah.05g179070' => 'amhyb', 'Ah.05g179090' => 'amhyb', 'Ah.12g059950' => 'amhyb', 'AL3G20480' => 'aly', 'AL4G44520' => 'aly', 'AL5G43110' => 'aly', 'AL6G13890' => 'aly', 'AL6G52620' => 'aly', 'AL7G30830' => 'aly', 'Aqoxy1G00899' => 'aox', 'Aqoxy5G04333' => 'aox', 'Aqoxy7G00641' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3IZ0NN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4EF6AW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W9P8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79GA3M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C43NQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFCU6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G95YVJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCHK29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LU1UG8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX91RN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGB4B1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8DA0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9H7JI' => 'arhy', 'AT3G09320' => 'ath', 'AT3G60800' => 'ath', 'AT4G00840' => 'ath', 'AT4G22750' => 'ath', 'AT5G04270' => 'ath', 'ATR0090G003' => 'atr', 'ATR0559G349' => 'atr', 'ATR0680G261' => 'atr', 'ATR0810G048' => 'atr', 'Atru.chr12.831' => 'acertr', 'Atru.chr5.303' => 'acertr', 'Atru.chr5.748' => 'acertr', 'Atru.chr8.1999' => 'acertr', 'Atru.chr9.1436' => 'acertr', 'AUR62004211' => 'cqu', 'AUR62004548' => 'cqu', 'AUR62013637' => 'cqu', 'AUR62022662' => 'cqu', 'AUR62025777' => 'cqu', 'AUR62042386' => 'cqu', 'BcaB01g02310' => 'bca', 'BcaB01g06062' => 'bca', 'BcaB02g08975' => 'bca', 'BcaB02g08980' => 'bca', 'BcaC01g04228' => 'bca', 'BcaC01g06830' => 'bca', 'BcaC02g10186' => 'bca', 'BcaC02g12214' => 'bca', 'BcaC04g24101' => 'bca', 'BcaC05g29520' => 'bca', 'BcaC05g29661' => 'bca', 'BcaC06g32130' => 'bca', 'BcaC06g32131' => 'bca', 'BcaC07g40601' => 'bca', 'BcaC07g42641' => 'bca', 'BcaNung01038' => 'bca', 'BcaNung01676' => 'bca', 'BcaNung02480' => 'bca', 'BcaNung07376' => 'bca', 'BolC3t16146H' => 'bol', 'BolC3t16637H' => 'bol', 'BolC4t22257H' => 'bol', 'BolC4t24728H' => 'bol', 'BolC5t34517H' => 'bol', 'BolC7t45703H' => 'bol', 'BolC8t51166H' => 'bol', 'BolC9t53038H' => 'bol', 'BolC9t60000H' => 'bol', 'BraA01t01345Z' => 'bra', 'BraA01t01346Z' => 'bra', 'BraA01t01348Z' => 'bra', 'BraA03t12347Z' => 'bra', 'BraA03t12775Z' => 'bra', 'BraA03t14439Z' => 'bra', 'BraA04t15860Z' => 'bra', 'BraA05t19511Z' => 'bra', 'BraA05t22746Z' => 'bra', 'BraA09t35767Z' => 'bra', 'BraA09t40732Z' => 'bra', 'BraA10t45233Z' => 'bra', 'C03p38720' => 'bna', 'C03p43680' => 'bna', 'C04p06350' => 'bna', 'C04p31800' => 'bna', 'C05p58680' => 'bna', 'C07p52110' => 'bna', 'C08p35760' => 'bna', 'C09p01050' => 'bna', 'C09p72600' => 'bna', 'CAN.G106.2' => 'can', 'CAN.G1482.1' => 'can', 'CAN.G324.12' => 'can', 'CAN.G388.20' => 'can', 'CAN.G412.7' => 'can', 'CAN.G694.32' => 'can', 'CAN.G92.12' => 'can', 'CANSAT11G2353' => 'cansat', 'CANSAT21G1398' => 'cansat', 'CANSAT56G2456' => 'cansat', 'CANSAT56G3031' => 'cansat', 'CANSAT56G4539' => 'cansat', 'CARHR083680' => 'chi', 'CARHR171190' => 'chi', 'CARHR209010' => 'chi', 'CARHR229680' => 'chi', 'CARHR249490' => 'chi', 'Carub.0003s0844' => 'cru', 'Carub.0005s2755' => 'cru', 'Carub.0006s0322' => 'cru', 'Carub.0006s3586' => 'cru', 'Carub.0007s1855' => 'cru', 'Ca_07808_v3' => 'car', 'Ca_09535_v3' => 'car', 'Ca_10548_v3' => 'car', 'Ca_19913_v3' => 'car', 'Ca_19916_v3' => 'car', 'Ca_19975_v3' => 'car', 'CBR_g22876' => 'cbr', 'CBR_g22879' => 'cbr', 'CBR_g38491' => 'cbr', 'CBR_g54185' => 'cbr', 'CBR_g54190' => 'cbr', 'Cc02_g11020' => 'ccan', 'Cc02_g23920' => 'ccan', 'Cc02_g39860' => 'ccan', 'Cc02_g39870' => 'ccan', 'Cc03_g06760' => 'ccan', 'Cc06_g02450' => 'ccan', 'Cc09_g09450' => 'ccan', 'CDE02G1959' => 'cde', 'CDE04G0600' => 'cde', 'CDE07G1996' => 'cde', 'CDE07G2078' => 'cde', 'CDE11G0611' => 'cde', 'Cfa001683' => 'cfa', 'Cfa001734' => 'cfa', 'Cfa001737' => 'cfa', 'Cfa003751' => 'cfa', 'Cfa012019' => 'cfa', 'Cfa017353' => 'cfa', 'Cfa017732' => 'cfa', 'Cfa022464' => 'cfa', 'Ciclev10012400m.g' => 'ccl', 'Ciclev10021242m.g' => 'ccl', 'Ciclev10021302m.g' => 'ccl', 'Ciclev10021463m.g' => 'ccl', 'Ciclev10032359m.g' => 'ccl', 'CiPaw.01G081000' => 'cil', 'CiPaw.01G262500' => 'cil', 'CiPaw.01G269800' => 'cil', 'CiPaw.02G168400' => 'cil', 'CiPaw.05G119500' => 'cil', 'CiPaw.11G147300' => 'cil', 'ClCG01G003630' => 'cla', 'ClCG05G000510' => 'cla', 'ClCG05G002300' => 'cla', 'ClCG08G007650' => 'cla', 'ClCG10G021250' => 'cla', 'COL.COLO4_06218' => 'col', 'COL.COLO4_12538' => 'col', 'COL.COLO4_14775' => 'col', 'COL.COLO4_23875' => 'col', 'Cpa.g.sc141.16' => 'cpa', 'Cpa.g.sc169.16' => 'cpa', 'Cpa.g.sc244.4' => 'cpa', 'Cpa.g.sc244.5' => 'cpa', 'Cpa.g.sc29.87' => 'cpa', 'Cpa.g.sc53.115' => 'cpa', 'Cre03.g207502' => 'cre', 'Cre06.g277000' => 'cre', 'Cre09.g394050' => 'cre', 'CsaV3_3G007680' => 'csa', 'CsaV3_3G009710' => 'csa', 'CsaV3_3G034790' => 'csa', 'CsaV3_5G003750' => 'csa', 'CsaV3_6G036620' => 'csa', 'CSS0002288' => 'camsi', 'CSS0011250' => 'camsi', 'CSS0021619' => 'camsi', 'CSS0046701' => 'camsi', 'DCAR_006420' => 'dca', 'DCAR_006865' => 'dca', 'DCAR_008558' => 'dca', 'DCAR_028754' => 'dca', 'DCAR_028755' => 'dca', 'Dinv31218' => 'din', 'Dinv32371' => 'din', 'Dinv34250' => 'din', 'Dinv37156' => 'din', 'Dinv43704' => 'din', 'Duzib093G1811' => 'dzi', 'Duzib106G1622' => 'dzi', 'Duzib114G0504' => 'dzi', 'Duzib128G0338' => 'dzi', 'Duzib128G1577' => 'dzi', 'Duzib133G0104' => 'dzi', 'Duzib133G1080' => 'dzi', 'Duzib138G0324' => 'dzi', 'Duzib138G0394' => 'dzi', 'Duzib205G0122' => 'dzi', 'Duzib268G1020' => 'dzi', 'Duzib268G1359' => 'dzi', 'ECA232G3929' => 'eca', 'ECA236G2210' => 'eca', 'ECA236G2287' => 'eca', 'ECA240G4568' => 'eca', 'ECA247G0894' => 'eca', 'EL10Ac1g00200' => 'bvu', 'EL10Ac1g00886' => 'bvu', 'EL10As1g23091' => 'bvu', 'EL10As1g23092' => 'bvu', 'Eucgr.A01284' => 'egr', 'Eucgr.A01285' => 'egr', 'Eucgr.D02456' => 'egr', 'Eucgr.E00018' => 'egr', 'Eucgr.E01439' => 'egr', 'Eucgr.G02859' => 'egr', 'FAN01G0168' => 'fan', 'FAN01G0453' => 'fan', 'FAN01G2761' => 'fan', 'FAN02G1239' => 'fan', 'FAN03G0645' => 'fan', 'FAN03G2707' => 'fan', 'FAN03G2978' => 'fan', 'FAN04G0227' => 'fan', 'FAN06G0091' => 'fan', 'FAN06G1418' => 'fan', 'FAN06G1512' => 'fan', 'FAN06G1986' => 'fan', 'FAN06G2905' => 'fan', 'FAN06G4325' => 'fan', 'FAN08G0033' => 'fan', 'FAN09G0642' => 'fan', 'FAN10G1763' => 'fan', 'FAN10G2026' => 'fan', 'FAN10G2513' => 'fan', 'FAN10G3402' => 'fan', 'FAN10G3564' => 'fan', 'FAN10G3987' => 'fan', 'FAN13G1490' => 'fan', 'FAN14G5857' => 'fan', 'FAN18G1188' => 'fan', 'FvH4_5g00750' => 'fve', 'FvH4_6g13410' => 'fve', 'FvH4_7g11740' => 'fve', 'FvH4_7g17410' => 'fve', 'FvH4_7g18860' => 'fve', 'Glyma.01G099100' => 'gma', 'Glyma.01G142300' => 'gma', 'Glyma.03G025500' => 'gma', 'Glyma.03G069700' => 'gma', 'Glyma.03G260000' => 'gma', 'Glyma.09G269800' => 'gma', 'Glyma.10G208700' => 'gma', 'Glyma.18G220400' => 'gma', 'Glyma.20G182000' => 'gma', 'Gohir.A01G221726' => 'ghi', 'Gohir.A07G134600' => 'ghi', 'Gohir.A07G146000' => 'ghi', 'Gohir.A08G173900' => 'ghi', 'Gohir.A09G194900' => 'ghi', 'Gohir.A10G204100' => 'ghi', 'Gohir.A11G080600' => 'ghi', 'Gohir.A11G327500' => 'ghi', 'Gohir.A12G101800' => 'ghi', 'Gohir.D01G211200' => 'ghi', 'Gohir.D07G139200' => 'ghi', 'Gohir.D07G152100' => 'ghi', 'Gohir.D08G192600' => 'ghi', 'Gohir.D09G189200' => 'ghi', 'Gohir.D10G212000' => 'ghi', 'Gohir.D11G085200' => 'ghi', 'Gohir.D11G346400' => 'ghi', 'Gohir.D12G104800' => 'ghi', 'Gorai.001G151300' => 'gra', 'Gorai.001G174100' => 'gra', 'Gorai.002G257000' => 'gra', 'Gorai.004G202600' => 'gra', 'Gorai.007G090900' => 'gra', 'Gorai.007G376700' => 'gra', 'Gorai.008G114100' => 'gra', 'Gorai.011G237900' => 'gra', 'GSVIVG01005450001' => 'vvi', 'GSVIVG01016232001' => 'vvi', 'GSVIVG01026157001' => 'vvi', 'GSVIVG01027419001' => 'vvi', 'GSVIVG01027631001' => 'vvi', 'GSVIVG01034143001' => 'vvi', 'HanXRQChr03g0093921' => 'han', 'HanXRQChr04g0120001' => 'han', 'HanXRQChr04g0122561' => 'han', 'HanXRQChr09g0246851' => 'han', 'HanXRQChr10g0293311' => 'han', 'HanXRQChr13g0425231' => 'han', 'HanXRQChr16g0532571' => 'han', 'Haze_09050' => 'cav', 'Haze_15715' => 'cav', 'Haze_15716' => 'cav', 'Haze_16803' => 'cav', 'Haze_16850' => 'cav', 'Hma1.2p1_0301F.1_g118655' => 'hma', 'Hma1.2p1_0309F.1_g120590' => 'hma', 'Hma1.2p1_0936F.1_g238900' => 'hma', 'Hma1.2p1_3552F.1_g336740' => 'hma', 'HPP92_003520' => 'vpl', 'HPP92_006628' => 'vpl', 'HPP92_006645' => 'vpl', 'HPP92_014669' => 'vpl', 'HPP92_015077' => 'vpl', 'Hund16742' => 'sun', 'Hund17022' => 'sun', 'Lalb_Chr02g0152131' => 'lal', 'Lalb_Chr05g0225371' => 'lal', 'Lalb_Chr07g0189841' => 'lal', 'Lalb_Chr07g0192961' => 'lal', 'Lalb_Chr12g0208221' => 'lal', 'Lalb_Chr13g0291211' => 'lal', 'Lalb_Chr13g0291781' => 'lal', 'Lalb_Chr18g0044651' => 'lal', 'Lalb_Chr21g0313731' => 'lal', 'Lj1g0022533' => 'lja', 'Lj2A18T50' => 'lonja', 'Lj2A92G93' => 'lonja', 'Lj3A965T73' => 'lonja', 'Lj3g0000673' => 'lja', 'Lj3g0002666' => 'lja', 'Lj4g0016985' => 'lja', 'Lj5g0003625' => 'lja', 'Lj7A529G36' => 'lonja', 'Lj9A569T49' => 'lonja', 'Lj9A604T63' => 'lonja', 'Lsat_1_v5_gn_3_132060' => 'lsa', 'Lsat_1_v5_gn_4_68941' => 'lsa', 'Lsat_1_v5_gn_5_95580' => 'lsa', 'Lsat_1_v5_gn_7_161' => 'lsa', 'Lsat_1_v5_gn_7_7041' => 'lsa', 'Lsat_1_v5_gn_9_33481' => 'lsa', 'Lsat_1_v5_gn_9_68260' => 'lsa', 'Manes.01G073100' => 'mes', 'Manes.01G266300' => 'mes', 'Manes.02G033300' => 'mes', 'Manes.05G017900' => 'mes', 'Manes.05G046100' => 'mes', 'Manes.08G080900' => 'mes', 'Manes.10G049400' => 'mes', 'Mapoly0009s0186' => 'mpo', 'Mapoly0036s0118' => 'mpo', 'Mapoly0101s0046' => 'mpo', 'MBI04_g30218_MAGBIO' => 'mbi', 'MBI04_g35564_MAGBIO' => 'mbi', 'MBI12_g34011_MAGBIO' => 'mbi', 'MBI14_g04655_MAGBIO' => 'mbi', 'MCO07G653' => 'mco', 'MCO10G173' => 'mco', 'MD01G1087100' => 'mdo', 'MD01G1104200' => 'mdo', 'MD02G1205100' => 'mdo', 'MD04G1079200' => 'mdo', 'MD04G1131400' => 'mdo', 'MD07G1121600' => 'mdo', 'MD07G1157300' => 'mdo', 'MD07G1171000' => 'mdo', 'MD12G1144500' => 'mdo', 'Medtr1g094610' => 'mtr', 'Medtr4g021795' => 'mtr', 'Medtr4g023760' => 'mtr', 'Medtr7g118050' => 'mtr', 'MELO3C005582.2' => 'cme', 'MELO3C005989.2' => 'cme', 'MELO3C006192.2' => 'cme', 'MELO3C009248.2' => 'cme', 'MELO3C019817.2' => 'cme', 'Migut.B01625' => 'egut', 'Migut.B01915' => 'egut', 'Migut.F01721' => 'egut', 'Migut.J00314' => 'egut', 'MSTRG.20742' => 'ama', 'MSTRG.8134' => 'ama', 'Nitab4.5_0000096g0010' => 'nta', 'Nitab4.5_0000202g0030' => 'nta', 'Nitab4.5_0000216g0370' => 'nta', 'Nitab4.5_0000457g0230' => 'nta', 'Nitab4.5_0001702g0170' => 'nta', 'Nitab4.5_0003607g0010' => 'nta', 'Nitab4.5_0004917g0020' => 'nta', 'Nitab4.5_0007059g0010' => 'nta', 'Nitab4.5_0007184g0010' => 'nta', 'Nitab4.5_0007346g0020' => 'nta', 'Nn1g00410' => 'nnu', 'Nn1g01252' => 'nnu', 'Nn2g11168' => 'nnu', 'Nn2g13403' => 'nnu', 'Nn2g13760' => 'nnu', 'Nn4g26380' => 'nnu', 'Oeu000806.2' => 'oeu', 'Oeu005788.1' => 'oeu', 'Oeu006900.3' => 'oeu', 'Oeu007797.1' => 'oeu', 'Oeu011932.1' => 'oeu', 'Oeu022739.1' => 'oeu', 'Oeu037918.1' => 'oeu', 'Oeu055490.2' => 'oeu', 'Os01g0844400' => 'osa', 'Os02g0819100' => 'osa', 'Os03g0804300' => 'osa', 'Os05g0458000' => 'osa', 'Os07g0467800' => 'osa', 'Os12g0602200' => 'osa', 'Peaxi162Scf00013g03444' => 'pax', 'Peaxi162Scf00094g01120' => 'pax', 'Peaxi162Scf00191g01211' => 'pax', 'Peaxi162Scf00238g01110' => 'pax', 'Peaxi162Scf00330g00719' => 'pax', 'Peaxi162Scf00627g00018' => 'pax', 'PGR031G2686' => 'pgr', 'PGR042G0809' => 'pgr', 'PGR142G0193' => 'pgr', 'PGSC0003DMG400011066' => 'stu', 'PGSC0003DMG400012041' => 'stu', 'PGSC0003DMG400013678' => 'stu', 'PGSC0003DMG400023477' => 'stu', 'PGSC0003DMG400025956' => 'stu', 'PGSC0003DMG401019151' => 'stu', 'Phvul.006G116400' => 'pvu', 'Phvul.007G097300' => 'pvu', 'Phvul.010G015000' => 'pvu', 'Phvul.010G083900' => 'pvu', 'Potri.001G117100' => 'ptr', 'Potri.002G147300' => 'ptr', 'Potri.003G115600' => 'ptr', 'Potri.006G087400' => 'ptr', 'Potri.010G226100' => 'ptr', 'Potri.014G069200' => 'ptr', 'Potri.014G104000' => 'ptr', 'Potri.016G100200' => 'ptr', 'Pp3c10_20450' => 'ppa', 'Pp3c1_42400' => 'ppa', 'Pp3c3_24390' => 'ppa', 'Pp3c3_2860' => 'ppa', 'PRCOL_00003193' => 'pco', 'Prupe.2G144500' => 'ppe', 'Prupe.2G195700' => 'ppe', 'Prupe.2G209800' => 'ppe', 'Prupe.5G080000' => 'ppe', 'Prupe.6G257900' => 'ppe', 'Psat3g001160' => 'psa', 'Psat6g181880' => 'psa', 'Psat7g233720' => 'psa', 'PSO063G7587' => 'pso', 'PSO339G2145' => 'pso', 'PSO339G3369' => 'pso', 'PSO478G2747' => 'pso', 'PSO513G0140' => 'pso', 'PSO782G1614' => 'pso', 'PSO782G4889' => 'pso', 'PSO782G5485' => 'pso', 'PSO801G0241' => 'pso', 'QL07p048854' => 'qlo', 'QL08p046745' => 'qlo', 'QL08p052606' => 'qlo', 'QL08p053414' => 'qlo', 'QL08p054868' => 'qlo', 'RcHm_v2.0_Chr1g0350251' => 'rch', 'RcHm_v2.0_Chr1g0360851' => 'rch', 'RcHm_v2.0_Chr1g0362791' => 'rch', 'RcHm_v2.0_Chr3g0466281' => 'rch', 'RcHm_v2.0_Chr7g0201481' => 'rch', 'Rhsim01G0148600' => 'rsi', 'Rhsim05G0194400' => 'rsi', 'Rhsim07G0000700' => 'rsi', 'Rhsim07G0000800' => 'rsi', 'Rhsim07G0027900' => 'rsi', 'Rhsim09G0149500' => 'rsi', 'RhsimUnG0186900' => 'rsi', 'Sabra01G0089900' => 'sbr', 'Sabra02G0114700' => 'sbr', 'Sabra02G0116300' => 'sbr', 'Sabra03G0080100' => 'sbr', 'Sabra08G0024300' => 'sbr', 'Sabra10G0174300' => 'sbr', 'Sabra14G0048900' => 'sbr', 'Sabra14G0076500' => 'sbr', 'SalBow5G2513' => 'sbo', 'Sc01g0002300' => 'sci', 'Sc01g0004450' => 'sci', 'Sc06g0001680' => 'sci', 'Sc23g0003580' => 'sci', 'Sed0000913' => 'sed', 'Sed0001655' => 'sed', 'Sed0007745' => 'sed', 'Sed0010951' => 'sed', 'Sed0017599' => 'sed', 'Sed0021405' => 'sed', 'Sed0022810' => 'sed', 'SEGI_07099' => 'sgi', 'SEGI_11931' => 'sgi', 'SEGI_13187' => 'sgi', 'SEGI_29958' => 'sgi', 'SEGI_36351' => 'sgi', 'SGA_v2.0_scaffold126G33770' => 'sas', 'SGA_v2.0_scaffold153G37003' => 'sas', 'SGA_v2.0_scaffold2G01359' => 'sas', 'SGA_v2.0_scaffold5G03064' => 'sas', 'SGA_v2.0_scaffold95G28903' => 'sas', 'SHI12701' => 'shi', 'SHI26410' => 'shi', 'SHI38997' => 'shi', 'SHI53759' => 'shi', 'SHI53886' => 'shi', 'SHI54714' => 'shi', 'SMO011G0041' => 'smo', 'SMO146G0251' => 'smo', 'SMO160G0004' => 'smo', 'SMO174G0057' => 'smo', 'SMO244G0089' => 'smo', 'SMO296G0011' => 'smo', 'Solyc01g091280.3' => 'sly', 'Solyc05g047610.3' => 'sly', 'Solyc05g047640.3' => 'sly', 'Solyc05g055630.3' => 'sly', 'Solyc10g018160.2' => 'sly', 'Solyc10g084820.2' => 'sly', 'Solyc10g086565.2' => 'sly', 'Sopen01g037030' => 'spe', 'Sopen05g027920' => 'spe', 'Sopen05g034070' => 'spe', 'Sopen10g007260' => 'spe', 'Sopen10g034260' => 'spe', 'Sopen10g035950' => 'spe', 'Sp3g07710' => 'spa', 'Sp4g27420' => 'spa', 'Sp5g02450' => 'spa', 'Sp6g01280' => 'spa', 'Sp6g38480' => 'spa', 'Sp7g20780' => 'spa', 'TAR374G1413' => 'tar', 'TAR623G1777' => 'tar', 'TAR629G2370' => 'tar', 'TAR633G1759' => 'tar', 'TAR636G3387' => 'tar', 'THA.LOC104802447' => 'tha', 'THA.LOC104813916' => 'tha', 'THA.LOC104816423' => 'tha', 'THA.LOC104817246' => 'tha', 'THA.LOC104825895' => 'tha', 'Thecc.01G335200' => 'tca', 'Thecc.01G377400' => 'tca', 'Thecc.03G262200' => 'tca', 'Thecc.05G036800' => 'tca', 'Thecc.10G080500' => 'tca', 'Thecc.10G080800' => 'tca', 'Thhalv10001560m.g' => 'esa', 'Thhalv10006120m.g' => 'esa', 'Thhalv10014375m.g' => 'esa', 'Thhalv10021264m.g' => 'esa', 'Thhalv10028856m.g' => 'esa', 'TPR.G1914' => 'tpr', 'TPR.G4757' => 'tpr', 'TPR.G5595' => 'tpr', 'TWI14G0952' => 'twi', 'TWI14G1307' => 'twi', 'TWI38G2143' => 'twi', 'TWI59G0826' => 'twi', 'TWI77G0527' => 'twi', 'TWI81G0150' => 'twi', 'unitig_21.g21018' => 'ugi', 'unitig_26.g9725' => 'ugi', 'unitig_744.g24653' => 'ugi', 'unitig_749.g13778' => 'ugi', 'unitig_899.g15035' => 'ugi', 'vmacro04296' => 'vma', 'vmacro04852' => 'vma', 'vmacro13404' => 'vma', 'vmacro20169' => 'vma', 'vmacro21014' => 'vma', 'VMungo0331G0237' => 'vmu', 'VMungo0331G0706' => 'vmu', 'VMungo0331G1361' => 'vmu', 'VMungo0331G1489' => 'vmu', 'VMungo0540G1037' => 'vmu', 'VMungo0720G2487' => 'vmu', 'VMungo0720G2721' => 'vmu', 'Zm00001eb086860' => 'zma', 'Zm00001eb104760' => 'zma', 'Zm00001eb148220' => 'zma', 'Zm00001eb259030' => 'zma', 'Zm00001eb289590' => 'zma', 'Zm00001eb420150' => 'zma' ), 'gf_id' => 'HOM05D000968', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000968' ), 'data_identifier' => 'HOM05D000968', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000968', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p31690' => 'bna', 'A03p36040' => 'bna', 'A03p53730' => 'bna', 'A04p01410' => 'bna', 'A05p05420' => 'bna', 'A05p39630' => 'bna', 'A05p39640' => 'bna', 'A09p00970' => 'bna', 'A09p53060' => 'bna', 'A10p31890' => 'bna', 'Aa31LG10G15040' => 'aar', 'Aa31LG1G21090' => 'aar', 'Aa31LG1G26900' => 'aar', 'Aa31LG3G1820' => 'aar', 'Aa31LG5G1100' => 'aar', 'Aa31LG6G4740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2265' => 'aag', 'Actinidia07998' => 'ach', 'Actinidia11266' => 'ach', 'Actinidia12682' => 'ach', 'Actinidia26479' => 'ach', 'Actinidia31406' => 'ach', 'Actinidia32437' => 'ach', 'Actinidia38862' => 'ach', 'Ah.05g174230' => 'amhyb', 'Ah.05g179070' => 'amhyb', 'Ah.05g179090' => 'amhyb', 'Ah.12g059950' => 'amhyb', 'AL3G20480' => 'aly', 'AL4G44520' => 'aly', 'AL5G43110' => 'aly', 'AL6G13890' => 'aly', 'AL6G52620' => 'aly', 'AL7G30830' => 'aly', 'Aqoxy1G00899' => 'aox', 'Aqoxy5G04333' => 'aox', 'Aqoxy7G00641' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3IZ0NN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4EF6AW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W9P8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79GA3M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C43NQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFCU6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G95YVJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCHK29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LU1UG8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX91RN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGB4B1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8DA0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9H7JI' => 'arhy', 'AT3G09320' => 'ath', 'AT3G60800' => 'ath', 'AT4G00840' => 'ath', 'AT4G22750' => 'ath', 'AT5G04270' => 'ath', 'ATR0090G003' => 'atr', 'ATR0559G349' => 'atr', 'ATR0680G261' => 'atr', 'ATR0810G048' => 'atr', 'Atru.chr12.831' => 'acertr', 'Atru.chr5.303' => 'acertr', 'Atru.chr5.748' => 'acertr', 'Atru.chr8.1999' => 'acertr', 'Atru.chr9.1436' => 'acertr', 'AUR62004211' => 'cqu', 'AUR62004548' => 'cqu', 'AUR62013637' => 'cqu', 'AUR62022662' => 'cqu', 'AUR62025777' => 'cqu', 'AUR62042386' => 'cqu', 'BcaB01g02310' => 'bca', 'BcaB01g06062' => 'bca', 'BcaB02g08975' => 'bca', 'BcaB02g08980' => 'bca', 'BcaC01g04228' => 'bca', 'BcaC01g06830' => 'bca', 'BcaC02g10186' => 'bca', 'BcaC02g12214' => 'bca', 'BcaC04g24101' => 'bca', 'BcaC05g29520' => 'bca', 'BcaC05g29661' => 'bca', 'BcaC06g32130' => 'bca', 'BcaC06g32131' => 'bca', 'BcaC07g40601' => 'bca', 'BcaC07g42641' => 'bca', 'BcaNung01038' => 'bca', 'BcaNung01676' => 'bca', 'BcaNung02480' => 'bca', 'BcaNung07376' => 'bca', 'BolC3t16146H' => 'bol', 'BolC3t16637H' => 'bol', 'BolC4t22257H' => 'bol', 'BolC4t24728H' => 'bol', 'BolC5t34517H' => 'bol', 'BolC7t45703H' => 'bol', 'BolC8t51166H' => 'bol', 'BolC9t53038H' => 'bol', 'BolC9t60000H' => 'bol', 'BraA01t01345Z' => 'bra', 'BraA01t01346Z' => 'bra', 'BraA01t01348Z' => 'bra', 'BraA03t12347Z' => 'bra', 'BraA03t12775Z' => 'bra', 'BraA03t14439Z' => 'bra', 'BraA04t15860Z' => 'bra', 'BraA05t19511Z' => 'bra', 'BraA05t22746Z' => 'bra', 'BraA09t35767Z' => 'bra', 'BraA09t40732Z' => 'bra', 'BraA10t45233Z' => 'bra', 'C03p38720' => 'bna', 'C03p43680' => 'bna', 'C04p06350' => 'bna', 'C04p31800' => 'bna', 'C05p58680' => 'bna', 'C07p52110' => 'bna', 'C08p35760' => 'bna', 'C09p01050' => 'bna', 'C09p72600' => 'bna', 'CAN.G106.2' => 'can', 'CAN.G1482.1' => 'can', 'CAN.G324.12' => 'can', 'CAN.G388.20' => 'can', 'CAN.G412.7' => 'can', 'CAN.G694.32' => 'can', 'CAN.G92.12' => 'can', 'CANSAT11G2353' => 'cansat', 'CANSAT21G1398' => 'cansat', 'CANSAT56G2456' => 'cansat', 'CANSAT56G3031' => 'cansat', 'CANSAT56G4539' => 'cansat', 'CARHR083680' => 'chi', 'CARHR171190' => 'chi', 'CARHR209010' => 'chi', 'CARHR229680' => 'chi', 'CARHR249490' => 'chi', 'Carub.0003s0844' => 'cru', 'Carub.0005s2755' => 'cru', 'Carub.0006s0322' => 'cru', 'Carub.0006s3586' => 'cru', 'Carub.0007s1855' => 'cru', 'Ca_07808_v3' => 'car', 'Ca_09535_v3' => 'car', 'Ca_10548_v3' => 'car', 'Ca_19913_v3' => 'car', 'Ca_19916_v3' => 'car', 'Ca_19975_v3' => 'car', 'CBR_g22876' => 'cbr', 'CBR_g22879' => 'cbr', 'CBR_g38491' => 'cbr', 'CBR_g54185' => 'cbr', 'CBR_g54190' => 'cbr', 'Cc02_g11020' => 'ccan', 'Cc02_g23920' => 'ccan', 'Cc02_g39860' => 'ccan', 'Cc02_g39870' => 'ccan', 'Cc03_g06760' => 'ccan', 'Cc06_g02450' => 'ccan', 'Cc09_g09450' => 'ccan', 'CDE02G1959' => 'cde', 'CDE04G0600' => 'cde', 'CDE07G1996' => 'cde', 'CDE07G2078' => 'cde', 'CDE11G0611' => 'cde', 'Cfa001683' => 'cfa', 'Cfa001734' => 'cfa', 'Cfa001737' => 'cfa', 'Cfa003751' => 'cfa', 'Cfa012019' => 'cfa', 'Cfa017353' => 'cfa', 'Cfa017732' => 'cfa', 'Cfa022464' => 'cfa', 'Ciclev10012400m.g' => 'ccl', 'Ciclev10021242m.g' => 'ccl', 'Ciclev10021302m.g' => 'ccl', 'Ciclev10021463m.g' => 'ccl', 'Ciclev10032359m.g' => 'ccl', 'CiPaw.01G081000' => 'cil', 'CiPaw.01G262500' => 'cil', 'CiPaw.01G269800' => 'cil', 'CiPaw.02G168400' => 'cil', 'CiPaw.05G119500' => 'cil', 'CiPaw.11G147300' => 'cil', 'ClCG01G003630' => 'cla', 'ClCG05G000510' => 'cla', 'ClCG05G002300' => 'cla', 'ClCG08G007650' => 'cla', 'ClCG10G021250' => 'cla', 'COL.COLO4_06218' => 'col', 'COL.COLO4_12538' => 'col', 'COL.COLO4_14775' => 'col', 'COL.COLO4_23875' => 'col', 'Cpa.g.sc141.16' => 'cpa', 'Cpa.g.sc169.16' => 'cpa', 'Cpa.g.sc244.4' => 'cpa', 'Cpa.g.sc244.5' => 'cpa', 'Cpa.g.sc29.87' => 'cpa', 'Cpa.g.sc53.115' => 'cpa', 'Cre03.g207502' => 'cre', 'Cre06.g277000' => 'cre', 'Cre09.g394050' => 'cre', 'CsaV3_3G007680' => 'csa', 'CsaV3_3G009710' => 'csa', 'CsaV3_3G034790' => 'csa', 'CsaV3_5G003750' => 'csa', 'CsaV3_6G036620' => 'csa', 'CSS0002288' => 'camsi', 'CSS0011250' => 'camsi', 'CSS0021619' => 'camsi', 'CSS0046701' => 'camsi', 'DCAR_006420' => 'dca', 'DCAR_006865' => 'dca', 'DCAR_008558' => 'dca', 'DCAR_028754' => 'dca', 'DCAR_028755' => 'dca', 'Dinv31218' => 'din', 'Dinv32371' => 'din', 'Dinv34250' => 'din', 'Dinv37156' => 'din', 'Dinv43704' => 'din', 'Duzib093G1811' => 'dzi', 'Duzib106G1622' => 'dzi', 'Duzib114G0504' => 'dzi', 'Duzib128G0338' => 'dzi', 'Duzib128G1577' => 'dzi', 'Duzib133G0104' => 'dzi', 'Duzib133G1080' => 'dzi', 'Duzib138G0324' => 'dzi', 'Duzib138G0394' => 'dzi', 'Duzib205G0122' => 'dzi', 'Duzib268G1020' => 'dzi', 'Duzib268G1359' => 'dzi', 'ECA232G3929' => 'eca', 'ECA236G2210' => 'eca', 'ECA236G2287' => 'eca', 'ECA240G4568' => 'eca', 'ECA247G0894' => 'eca', 'EL10Ac1g00200' => 'bvu', 'EL10Ac1g00886' => 'bvu', 'EL10As1g23091' => 'bvu', 'EL10As1g23092' => 'bvu', 'Eucgr.A01284' => 'egr', 'Eucgr.A01285' => 'egr', 'Eucgr.D02456' => 'egr', 'Eucgr.E00018' => 'egr', 'Eucgr.E01439' => 'egr', 'Eucgr.G02859' => 'egr', 'FAN01G0168' => 'fan', 'FAN01G0453' => 'fan', 'FAN01G2761' => 'fan', 'FAN02G1239' => 'fan', 'FAN03G0645' => 'fan', 'FAN03G2707' => 'fan', 'FAN03G2978' => 'fan', 'FAN04G0227' => 'fan', 'FAN06G0091' => 'fan', 'FAN06G1418' => 'fan', 'FAN06G1512' => 'fan', 'FAN06G1986' => 'fan', 'FAN06G2905' => 'fan', 'FAN06G4325' => 'fan', 'FAN08G0033' => 'fan', 'FAN09G0642' => 'fan', 'FAN10G1763' => 'fan', 'FAN10G2026' => 'fan', 'FAN10G2513' => 'fan', 'FAN10G3402' => 'fan', 'FAN10G3564' => 'fan', 'FAN10G3987' => 'fan', 'FAN13G1490' => 'fan', 'FAN14G5857' => 'fan', 'FAN18G1188' => 'fan', 'FvH4_5g00750' => 'fve', 'FvH4_6g13410' => 'fve', 'FvH4_7g11740' => 'fve', 'FvH4_7g17410' => 'fve', 'FvH4_7g18860' => 'fve', 'Glyma.01G099100' => 'gma', 'Glyma.01G142300' => 'gma', 'Glyma.03G025500' => 'gma', 'Glyma.03G069700' => 'gma', 'Glyma.03G260000' => 'gma', 'Glyma.09G269800' => 'gma', 'Glyma.10G208700' => 'gma', 'Glyma.18G220400' => 'gma', 'Glyma.20G182000' => 'gma', 'Gohir.A01G221726' => 'ghi', 'Gohir.A07G134600' => 'ghi', 'Gohir.A07G146000' => 'ghi', 'Gohir.A08G173900' => 'ghi', 'Gohir.A09G194900' => 'ghi', 'Gohir.A10G204100' => 'ghi', 'Gohir.A11G080600' => 'ghi', 'Gohir.A11G327500' => 'ghi', 'Gohir.A12G101800' => 'ghi', 'Gohir.D01G211200' => 'ghi', 'Gohir.D07G139200' => 'ghi', 'Gohir.D07G152100' => 'ghi', 'Gohir.D08G192600' => 'ghi', 'Gohir.D09G189200' => 'ghi', 'Gohir.D10G212000' => 'ghi', 'Gohir.D11G085200' => 'ghi', 'Gohir.D11G346400' => 'ghi', 'Gohir.D12G104800' => 'ghi', 'Gorai.001G151300' => 'gra', 'Gorai.001G174100' => 'gra', 'Gorai.002G257000' => 'gra', 'Gorai.004G202600' => 'gra', 'Gorai.007G090900' => 'gra', 'Gorai.007G376700' => 'gra', 'Gorai.008G114100' => 'gra', 'Gorai.011G237900' => 'gra', 'GSVIVG01005450001' => 'vvi', 'GSVIVG01016232001' => 'vvi', 'GSVIVG01026157001' => 'vvi', 'GSVIVG01027419001' => 'vvi', 'GSVIVG01027631001' => 'vvi', 'GSVIVG01034143001' => 'vvi', 'HanXRQChr03g0093921' => 'han', 'HanXRQChr04g0120001' => 'han', 'HanXRQChr04g0122561' => 'han', 'HanXRQChr09g0246851' => 'han', 'HanXRQChr10g0293311' => 'han', 'HanXRQChr13g0425231' => 'han', 'HanXRQChr16g0532571' => 'han', 'Haze_09050' => 'cav', 'Haze_15715' => 'cav', 'Haze_15716' => 'cav', 'Haze_16803' => 'cav', 'Haze_16850' => 'cav', 'Hma1.2p1_0301F.1_g118655' => 'hma', 'Hma1.2p1_0309F.1_g120590' => 'hma', 'Hma1.2p1_0936F.1_g238900' => 'hma', 'Hma1.2p1_3552F.1_g336740' => 'hma', 'HPP92_003520' => 'vpl', 'HPP92_006628' => 'vpl', 'HPP92_006645' => 'vpl', 'HPP92_014669' => 'vpl', 'HPP92_015077' => 'vpl', 'Hund16742' => 'sun', 'Hund17022' => 'sun', 'Lalb_Chr02g0152131' => 'lal', 'Lalb_Chr05g0225371' => 'lal', 'Lalb_Chr07g0189841' => 'lal', 'Lalb_Chr07g0192961' => 'lal', 'Lalb_Chr12g0208221' => 'lal', 'Lalb_Chr13g0291211' => 'lal', 'Lalb_Chr13g0291781' => 'lal', 'Lalb_Chr18g0044651' => 'lal', 'Lalb_Chr21g0313731' => 'lal', 'Lj1g0022533' => 'lja', 'Lj2A18T50' => 'lonja', 'Lj2A92G93' => 'lonja', 'Lj3A965T73' => 'lonja', 'Lj3g0000673' => 'lja', 'Lj3g0002666' => 'lja', 'Lj4g0016985' => 'lja', 'Lj5g0003625' => 'lja', 'Lj7A529G36' => 'lonja', 'Lj9A569T49' => 'lonja', 'Lj9A604T63' => 'lonja', 'Lsat_1_v5_gn_3_132060' => 'lsa', 'Lsat_1_v5_gn_4_68941' => 'lsa', 'Lsat_1_v5_gn_5_95580' => 'lsa', 'Lsat_1_v5_gn_7_161' => 'lsa', 'Lsat_1_v5_gn_7_7041' => 'lsa', 'Lsat_1_v5_gn_9_33481' => 'lsa', 'Lsat_1_v5_gn_9_68260' => 'lsa', 'Manes.01G073100' => 'mes', 'Manes.01G266300' => 'mes', 'Manes.02G033300' => 'mes', 'Manes.05G017900' => 'mes', 'Manes.05G046100' => 'mes', 'Manes.08G080900' => 'mes', 'Manes.10G049400' => 'mes', 'Mapoly0009s0186' => 'mpo', 'Mapoly0036s0118' => 'mpo', 'Mapoly0101s0046' => 'mpo', 'MBI04_g30218_MAGBIO' => 'mbi', 'MBI04_g35564_MAGBIO' => 'mbi', 'MBI12_g34011_MAGBIO' => 'mbi', 'MBI14_g04655_MAGBIO' => 'mbi', 'MCO07G653' => 'mco', 'MCO10G173' => 'mco', 'MD01G1087100' => 'mdo', 'MD01G1104200' => 'mdo', 'MD02G1205100' => 'mdo', 'MD04G1079200' => 'mdo', 'MD04G1131400' => 'mdo', 'MD07G1121600' => 'mdo', 'MD07G1157300' => 'mdo', 'MD07G1171000' => 'mdo', 'MD12G1144500' => 'mdo', 'Medtr1g094610' => 'mtr', 'Medtr4g021795' => 'mtr', 'Medtr4g023760' => 'mtr', 'Medtr7g118050' => 'mtr', 'MELO3C005582.2' => 'cme', 'MELO3C005989.2' => 'cme', 'MELO3C006192.2' => 'cme', 'MELO3C009248.2' => 'cme', 'MELO3C019817.2' => 'cme', 'Migut.B01625' => 'egut', 'Migut.B01915' => 'egut', 'Migut.F01721' => 'egut', 'Migut.J00314' => 'egut', 'MSTRG.20742' => 'ama', 'MSTRG.8134' => 'ama', 'Nitab4.5_0000096g0010' => 'nta', 'Nitab4.5_0000202g0030' => 'nta', 'Nitab4.5_0000216g0370' => 'nta', 'Nitab4.5_0000457g0230' => 'nta', 'Nitab4.5_0001702g0170' => 'nta', 'Nitab4.5_0003607g0010' => 'nta', 'Nitab4.5_0004917g0020' => 'nta', 'Nitab4.5_0007059g0010' => 'nta', 'Nitab4.5_0007184g0010' => 'nta', 'Nitab4.5_0007346g0020' => 'nta', 'Nn1g00410' => 'nnu', 'Nn1g01252' => 'nnu', 'Nn2g11168' => 'nnu', 'Nn2g13403' => 'nnu', 'Nn2g13760' => 'nnu', 'Nn4g26380' => 'nnu', 'Oeu000806.2' => 'oeu', 'Oeu005788.1' => 'oeu', 'Oeu006900.3' => 'oeu', 'Oeu007797.1' => 'oeu', 'Oeu011932.1' => 'oeu', 'Oeu022739.1' => 'oeu', 'Oeu037918.1' => 'oeu', 'Oeu055490.2' => 'oeu', 'Os01g0844400' => 'osa', 'Os02g0819100' => 'osa', 'Os03g0804300' => 'osa', 'Os05g0458000' => 'osa', 'Os07g0467800' => 'osa', 'Os12g0602200' => 'osa', 'Peaxi162Scf00013g03444' => 'pax', 'Peaxi162Scf00094g01120' => 'pax', 'Peaxi162Scf00191g01211' => 'pax', 'Peaxi162Scf00238g01110' => 'pax', 'Peaxi162Scf00330g00719' => 'pax', 'Peaxi162Scf00627g00018' => 'pax', 'PGR031G2686' => 'pgr', 'PGR042G0809' => 'pgr', 'PGR142G0193' => 'pgr', 'PGSC0003DMG400011066' => 'stu', 'PGSC0003DMG400012041' => 'stu', 'PGSC0003DMG400013678' => 'stu', 'PGSC0003DMG400023477' => 'stu', 'PGSC0003DMG400025956' => 'stu', 'PGSC0003DMG401019151' => 'stu', 'Phvul.006G116400' => 'pvu', 'Phvul.007G097300' => 'pvu', 'Phvul.010G015000' => 'pvu', 'Phvul.010G083900' => 'pvu', 'Potri.001G117100' => 'ptr', 'Potri.002G147300' => 'ptr', 'Potri.003G115600' => 'ptr', 'Potri.006G087400' => 'ptr', 'Potri.010G226100' => 'ptr', 'Potri.014G069200' => 'ptr', 'Potri.014G104000' => 'ptr', 'Potri.016G100200' => 'ptr', 'Pp3c10_20450' => 'ppa', 'Pp3c1_42400' => 'ppa', 'Pp3c3_24390' => 'ppa', 'Pp3c3_2860' => 'ppa', 'PRCOL_00003193' => 'pco', 'Prupe.2G144500' => 'ppe', 'Prupe.2G195700' => 'ppe', 'Prupe.2G209800' => 'ppe', 'Prupe.5G080000' => 'ppe', 'Prupe.6G257900' => 'ppe', 'Psat3g001160' => 'psa', 'Psat6g181880' => 'psa', 'Psat7g233720' => 'psa', 'PSO063G7587' => 'pso', 'PSO339G2145' => 'pso', 'PSO339G3369' => 'pso', 'PSO478G2747' => 'pso', 'PSO513G0140' => 'pso', 'PSO782G1614' => 'pso', 'PSO782G4889' => 'pso', 'PSO782G5485' => 'pso', 'PSO801G0241' => 'pso', 'QL07p048854' => 'qlo', 'QL08p046745' => 'qlo', 'QL08p052606' => 'qlo', 'QL08p053414' => 'qlo', 'QL08p054868' => 'qlo', 'RcHm_v2.0_Chr1g0350251' => 'rch', 'RcHm_v2.0_Chr1g0360851' => 'rch', 'RcHm_v2.0_Chr1g0362791' => 'rch', 'RcHm_v2.0_Chr3g0466281' => 'rch', 'RcHm_v2.0_Chr7g0201481' => 'rch', 'Rhsim01G0148600' => 'rsi', 'Rhsim05G0194400' => 'rsi', 'Rhsim07G0000700' => 'rsi', 'Rhsim07G0000800' => 'rsi', 'Rhsim07G0027900' => 'rsi', 'Rhsim09G0149500' => 'rsi', 'RhsimUnG0186900' => 'rsi', 'Sabra01G0089900' => 'sbr', 'Sabra02G0114700' => 'sbr', 'Sabra02G0116300' => 'sbr', 'Sabra03G0080100' => 'sbr', 'Sabra08G0024300' => 'sbr', 'Sabra10G0174300' => 'sbr', 'Sabra14G0048900' => 'sbr', 'Sabra14G0076500' => 'sbr', 'SalBow5G2513' => 'sbo', 'Sc01g0002300' => 'sci', 'Sc01g0004450' => 'sci', 'Sc06g0001680' => 'sci', 'Sc23g0003580' => 'sci', 'Sed0000913' => 'sed', 'Sed0001655' => 'sed', 'Sed0007745' => 'sed', 'Sed0010951' => 'sed', 'Sed0017599' => 'sed', 'Sed0021405' => 'sed', 'Sed0022810' => 'sed', 'SEGI_07099' => 'sgi', 'SEGI_11931' => 'sgi', 'SEGI_13187' => 'sgi', 'SEGI_29958' => 'sgi', 'SEGI_36351' => 'sgi', 'SGA_v2.0_scaffold126G33770' => 'sas', 'SGA_v2.0_scaffold153G37003' => 'sas', 'SGA_v2.0_scaffold2G01359' => 'sas', 'SGA_v2.0_scaffold5G03064' => 'sas', 'SGA_v2.0_scaffold95G28903' => 'sas', 'SHI12701' => 'shi', 'SHI26410' => 'shi', 'SHI38997' => 'shi', 'SHI53759' => 'shi', 'SHI53886' => 'shi', 'SHI54714' => 'shi', 'SMO011G0041' => 'smo', 'SMO146G0251' => 'smo', 'SMO160G0004' => 'smo', 'SMO174G0057' => 'smo', 'SMO244G0089' => 'smo', 'SMO296G0011' => 'smo', 'Solyc01g091280.3' => 'sly', 'Solyc05g047610.3' => 'sly', 'Solyc05g047640.3' => 'sly', 'Solyc05g055630.3' => 'sly', 'Solyc10g018160.2' => 'sly', 'Solyc10g084820.2' => 'sly', 'Solyc10g086565.2' => 'sly', 'Sopen01g037030' => 'spe', 'Sopen05g027920' => 'spe', 'Sopen05g034070' => 'spe', 'Sopen10g007260' => 'spe', 'Sopen10g034260' => 'spe', 'Sopen10g035950' => 'spe', 'Sp3g07710' => 'spa', 'Sp4g27420' => 'spa', 'Sp5g02450' => 'spa', 'Sp6g01280' => 'spa', 'Sp6g38480' => 'spa', 'Sp7g20780' => 'spa', 'TAR374G1413' => 'tar', 'TAR623G1777' => 'tar', 'TAR629G2370' => 'tar', 'TAR633G1759' => 'tar', 'TAR636G3387' => 'tar', 'THA.LOC104802447' => 'tha', 'THA.LOC104813916' => 'tha', 'THA.LOC104816423' => 'tha', 'THA.LOC104817246' => 'tha', 'THA.LOC104825895' => 'tha', 'Thecc.01G335200' => 'tca', 'Thecc.01G377400' => 'tca', 'Thecc.03G262200' => 'tca', 'Thecc.05G036800' => 'tca', 'Thecc.10G080500' => 'tca', 'Thecc.10G080800' => 'tca', 'Thhalv10001560m.g' => 'esa', 'Thhalv10006120m.g' => 'esa', 'Thhalv10014375m.g' => 'esa', 'Thhalv10021264m.g' => 'esa', 'Thhalv10028856m.g' => 'esa', 'TPR.G1914' => 'tpr', 'TPR.G4757' => 'tpr', 'TPR.G5595' => 'tpr', 'TWI14G0952' => 'twi', 'TWI14G1307' => 'twi', 'TWI38G2143' => 'twi', 'TWI59G0826' => 'twi', 'TWI77G0527' => 'twi', 'TWI81G0150' => 'twi', 'unitig_21.g21018' => 'ugi', 'unitig_26.g9725' => 'ugi', 'unitig_744.g24653' => 'ugi', 'unitig_749.g13778' => 'ugi', 'unitig_899.g15035' => 'ugi', 'vmacro04296' => 'vma', 'vmacro04852' => 'vma', 'vmacro13404' => 'vma', 'vmacro20169' => 'vma', 'vmacro21014' => 'vma', 'VMungo0331G0237' => 'vmu', 'VMungo0331G0706' => 'vmu', 'VMungo0331G1361' => 'vmu', 'VMungo0331G1489' => 'vmu', 'VMungo0540G1037' => 'vmu', 'VMungo0720G2487' => 'vmu', 'VMungo0720G2721' => 'vmu', 'Zm00001eb086860' => 'zma', 'Zm00001eb104760' => 'zma', 'Zm00001eb148220' => 'zma', 'Zm00001eb259030' => 'zma', 'Zm00001eb289590' => 'zma', 'Zm00001eb420150' => 'zma' ) $gf_id = 'HOM05D000968' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000968' ) $data_identifier = 'HOM05D000968' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 19, 'bol' => (int) 9, 'bra' => (int) 12, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 5, 'ccan' => (int) 7, 'cde' => (int) 5, 'cfa' => (int) 8, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 4, 'dca' => (int) 5, 'din' => (int) 5, 'dzi' => (int) 12, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 25, 'fve' => (int) 5, 'gma' => (int) 9, 'ghi' => (int) 18, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 7, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 5, 'sun' => (int) 2, 'lal' => (int) 9, 'lja' => (int) 5, 'lonja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 9, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 2, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 3, 'stu' => (int) 6, 'pvu' => (int) 4, 'ptr' => (int) 8, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 3, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 1, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 5, 'sas' => (int) 5, 'shi' => (int) 6, 'smo' => (int) 6, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 3, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420150' $species_info = array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ) $local_species = 'osa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000968', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p31690' => 'bna', 'A03p36040' => 'bna', 'A03p53730' => 'bna', 'A04p01410' => 'bna', 'A05p05420' => 'bna', 'A05p39630' => 'bna', 'A05p39640' => 'bna', 'A09p00970' => 'bna', 'A09p53060' => 'bna', 'A10p31890' => 'bna', 'Aa31LG10G15040' => 'aar', 'Aa31LG1G21090' => 'aar', 'Aa31LG1G26900' => 'aar', 'Aa31LG3G1820' => 'aar', 'Aa31LG5G1100' => 'aar', 'Aa31LG6G4740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2265' => 'aag', 'Actinidia07998' => 'ach', 'Actinidia11266' => 'ach', 'Actinidia12682' => 'ach', 'Actinidia26479' => 'ach', 'Actinidia31406' => 'ach', 'Actinidia32437' => 'ach', 'Actinidia38862' => 'ach', 'Ah.05g174230' => 'amhyb', 'Ah.05g179070' => 'amhyb', 'Ah.05g179090' => 'amhyb', 'Ah.12g059950' => 'amhyb', 'AL3G20480' => 'aly', 'AL4G44520' => 'aly', 'AL5G43110' => 'aly', 'AL6G13890' => 'aly', 'AL6G52620' => 'aly', 'AL7G30830' => 'aly', 'Aqoxy1G00899' => 'aox', 'Aqoxy5G04333' => 'aox', 'Aqoxy7G00641' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3IZ0NN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4EF6AW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W9P8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79GA3M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C43NQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFCU6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G95YVJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCHK29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LU1UG8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX91RN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGB4B1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8DA0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9H7JI' => 'arhy', 'AT3G09320' => 'ath', 'AT3G60800' => 'ath', 'AT4G00840' => 'ath', 'AT4G22750' => 'ath', 'AT5G04270' => 'ath', 'ATR0090G003' => 'atr', 'ATR0559G349' => 'atr', 'ATR0680G261' => 'atr', 'ATR0810G048' => 'atr', 'Atru.chr12.831' => 'acertr', 'Atru.chr5.303' => 'acertr', 'Atru.chr5.748' => 'acertr', 'Atru.chr8.1999' => 'acertr', 'Atru.chr9.1436' => 'acertr', 'AUR62004211' => 'cqu', 'AUR62004548' => 'cqu', 'AUR62013637' => 'cqu', 'AUR62022662' => 'cqu', 'AUR62025777' => 'cqu', 'AUR62042386' => 'cqu', 'BcaB01g02310' => 'bca', 'BcaB01g06062' => 'bca', 'BcaB02g08975' => 'bca', 'BcaB02g08980' => 'bca', 'BcaC01g04228' => 'bca', 'BcaC01g06830' => 'bca', 'BcaC02g10186' => 'bca', 'BcaC02g12214' => 'bca', 'BcaC04g24101' => 'bca', 'BcaC05g29520' => 'bca', 'BcaC05g29661' => 'bca', 'BcaC06g32130' => 'bca', 'BcaC06g32131' => 'bca', 'BcaC07g40601' => 'bca', 'BcaC07g42641' => 'bca', 'BcaNung01038' => 'bca', 'BcaNung01676' => 'bca', 'BcaNung02480' => 'bca', 'BcaNung07376' => 'bca', 'BolC3t16146H' => 'bol', 'BolC3t16637H' => 'bol', 'BolC4t22257H' => 'bol', 'BolC4t24728H' => 'bol', 'BolC5t34517H' => 'bol', 'BolC7t45703H' => 'bol', 'BolC8t51166H' => 'bol', 'BolC9t53038H' => 'bol', 'BolC9t60000H' => 'bol', 'BraA01t01345Z' => 'bra', 'BraA01t01346Z' => 'bra', 'BraA01t01348Z' => 'bra', 'BraA03t12347Z' => 'bra', 'BraA03t12775Z' => 'bra', 'BraA03t14439Z' => 'bra', 'BraA04t15860Z' => 'bra', 'BraA05t19511Z' => 'bra', 'BraA05t22746Z' => 'bra', 'BraA09t35767Z' => 'bra', 'BraA09t40732Z' => 'bra', 'BraA10t45233Z' => 'bra', 'C03p38720' => 'bna', 'C03p43680' => 'bna', 'C04p06350' => 'bna', 'C04p31800' => 'bna', 'C05p58680' => 'bna', 'C07p52110' => 'bna', 'C08p35760' => 'bna', 'C09p01050' => 'bna', 'C09p72600' => 'bna', 'CAN.G106.2' => 'can', 'CAN.G1482.1' => 'can', 'CAN.G324.12' => 'can', 'CAN.G388.20' => 'can', 'CAN.G412.7' => 'can', 'CAN.G694.32' => 'can', 'CAN.G92.12' => 'can', 'CANSAT11G2353' => 'cansat', 'CANSAT21G1398' => 'cansat', 'CANSAT56G2456' => 'cansat', 'CANSAT56G3031' => 'cansat', 'CANSAT56G4539' => 'cansat', 'CARHR083680' => 'chi', 'CARHR171190' => 'chi', 'CARHR209010' => 'chi', 'CARHR229680' => 'chi', 'CARHR249490' => 'chi', 'Carub.0003s0844' => 'cru', 'Carub.0005s2755' => 'cru', 'Carub.0006s0322' => 'cru', 'Carub.0006s3586' => 'cru', 'Carub.0007s1855' => 'cru', 'Ca_07808_v3' => 'car', 'Ca_09535_v3' => 'car', 'Ca_10548_v3' => 'car', 'Ca_19913_v3' => 'car', 'Ca_19916_v3' => 'car', 'Ca_19975_v3' => 'car', 'CBR_g22876' => 'cbr', 'CBR_g22879' => 'cbr', 'CBR_g38491' => 'cbr', 'CBR_g54185' => 'cbr', 'CBR_g54190' => 'cbr', 'Cc02_g11020' => 'ccan', 'Cc02_g23920' => 'ccan', 'Cc02_g39860' => 'ccan', 'Cc02_g39870' => 'ccan', 'Cc03_g06760' => 'ccan', 'Cc06_g02450' => 'ccan', 'Cc09_g09450' => 'ccan', 'CDE02G1959' => 'cde', 'CDE04G0600' => 'cde', 'CDE07G1996' => 'cde', 'CDE07G2078' => 'cde', 'CDE11G0611' => 'cde', 'Cfa001683' => 'cfa', 'Cfa001734' => 'cfa', 'Cfa001737' => 'cfa', 'Cfa003751' => 'cfa', 'Cfa012019' => 'cfa', 'Cfa017353' => 'cfa', 'Cfa017732' => 'cfa', 'Cfa022464' => 'cfa', 'Ciclev10012400m.g' => 'ccl', 'Ciclev10021242m.g' => 'ccl', 'Ciclev10021302m.g' => 'ccl', 'Ciclev10021463m.g' => 'ccl', 'Ciclev10032359m.g' => 'ccl', 'CiPaw.01G081000' => 'cil', 'CiPaw.01G262500' => 'cil', 'CiPaw.01G269800' => 'cil', 'CiPaw.02G168400' => 'cil', 'CiPaw.05G119500' => 'cil', 'CiPaw.11G147300' => 'cil', 'ClCG01G003630' => 'cla', 'ClCG05G000510' => 'cla', 'ClCG05G002300' => 'cla', 'ClCG08G007650' => 'cla', 'ClCG10G021250' => 'cla', 'COL.COLO4_06218' => 'col', 'COL.COLO4_12538' => 'col', 'COL.COLO4_14775' => 'col', 'COL.COLO4_23875' => 'col', 'Cpa.g.sc141.16' => 'cpa', 'Cpa.g.sc169.16' => 'cpa', 'Cpa.g.sc244.4' => 'cpa', 'Cpa.g.sc244.5' => 'cpa', 'Cpa.g.sc29.87' => 'cpa', 'Cpa.g.sc53.115' => 'cpa', 'Cre03.g207502' => 'cre', 'Cre06.g277000' => 'cre', 'Cre09.g394050' => 'cre', 'CsaV3_3G007680' => 'csa', 'CsaV3_3G009710' => 'csa', 'CsaV3_3G034790' => 'csa', 'CsaV3_5G003750' => 'csa', 'CsaV3_6G036620' => 'csa', 'CSS0002288' => 'camsi', 'CSS0011250' => 'camsi', 'CSS0021619' => 'camsi', 'CSS0046701' => 'camsi', 'DCAR_006420' => 'dca', 'DCAR_006865' => 'dca', 'DCAR_008558' => 'dca', 'DCAR_028754' => 'dca', 'DCAR_028755' => 'dca', 'Dinv31218' => 'din', 'Dinv32371' => 'din', 'Dinv34250' => 'din', 'Dinv37156' => 'din', 'Dinv43704' => 'din', 'Duzib093G1811' => 'dzi', 'Duzib106G1622' => 'dzi', 'Duzib114G0504' => 'dzi', 'Duzib128G0338' => 'dzi', 'Duzib128G1577' => 'dzi', 'Duzib133G0104' => 'dzi', 'Duzib133G1080' => 'dzi', 'Duzib138G0324' => 'dzi', 'Duzib138G0394' => 'dzi', 'Duzib205G0122' => 'dzi', 'Duzib268G1020' => 'dzi', 'Duzib268G1359' => 'dzi', 'ECA232G3929' => 'eca', 'ECA236G2210' => 'eca', 'ECA236G2287' => 'eca', 'ECA240G4568' => 'eca', 'ECA247G0894' => 'eca', 'EL10Ac1g00200' => 'bvu', 'EL10Ac1g00886' => 'bvu', 'EL10As1g23091' => 'bvu', 'EL10As1g23092' => 'bvu', 'Eucgr.A01284' => 'egr', 'Eucgr.A01285' => 'egr', 'Eucgr.D02456' => 'egr', 'Eucgr.E00018' => 'egr', 'Eucgr.E01439' => 'egr', 'Eucgr.G02859' => 'egr', 'FAN01G0168' => 'fan', 'FAN01G0453' => 'fan', 'FAN01G2761' => 'fan', 'FAN02G1239' => 'fan', 'FAN03G0645' => 'fan', 'FAN03G2707' => 'fan', 'FAN03G2978' => 'fan', 'FAN04G0227' => 'fan', 'FAN06G0091' => 'fan', 'FAN06G1418' => 'fan', 'FAN06G1512' => 'fan', 'FAN06G1986' => 'fan', 'FAN06G2905' => 'fan', 'FAN06G4325' => 'fan', 'FAN08G0033' => 'fan', 'FAN09G0642' => 'fan', 'FAN10G1763' => 'fan', 'FAN10G2026' => 'fan', 'FAN10G2513' => 'fan', 'FAN10G3402' => 'fan', 'FAN10G3564' => 'fan', 'FAN10G3987' => 'fan', 'FAN13G1490' => 'fan', 'FAN14G5857' => 'fan', 'FAN18G1188' => 'fan', 'FvH4_5g00750' => 'fve', 'FvH4_6g13410' => 'fve', 'FvH4_7g11740' => 'fve', 'FvH4_7g17410' => 'fve', 'FvH4_7g18860' => 'fve', 'Glyma.01G099100' => 'gma', 'Glyma.01G142300' => 'gma', 'Glyma.03G025500' => 'gma', 'Glyma.03G069700' => 'gma', 'Glyma.03G260000' => 'gma', 'Glyma.09G269800' => 'gma', 'Glyma.10G208700' => 'gma', 'Glyma.18G220400' => 'gma', 'Glyma.20G182000' => 'gma', 'Gohir.A01G221726' => 'ghi', 'Gohir.A07G134600' => 'ghi', 'Gohir.A07G146000' => 'ghi', 'Gohir.A08G173900' => 'ghi', 'Gohir.A09G194900' => 'ghi', 'Gohir.A10G204100' => 'ghi', 'Gohir.A11G080600' => 'ghi', 'Gohir.A11G327500' => 'ghi', 'Gohir.A12G101800' => 'ghi', 'Gohir.D01G211200' => 'ghi', 'Gohir.D07G139200' => 'ghi', 'Gohir.D07G152100' => 'ghi', 'Gohir.D08G192600' => 'ghi', 'Gohir.D09G189200' => 'ghi', 'Gohir.D10G212000' => 'ghi', 'Gohir.D11G085200' => 'ghi', 'Gohir.D11G346400' => 'ghi', 'Gohir.D12G104800' => 'ghi', 'Gorai.001G151300' => 'gra', 'Gorai.001G174100' => 'gra', 'Gorai.002G257000' => 'gra', 'Gorai.004G202600' => 'gra', 'Gorai.007G090900' => 'gra', 'Gorai.007G376700' => 'gra', 'Gorai.008G114100' => 'gra', 'Gorai.011G237900' => 'gra', 'GSVIVG01005450001' => 'vvi', 'GSVIVG01016232001' => 'vvi', 'GSVIVG01026157001' => 'vvi', 'GSVIVG01027419001' => 'vvi', 'GSVIVG01027631001' => 'vvi', 'GSVIVG01034143001' => 'vvi', 'HanXRQChr03g0093921' => 'han', 'HanXRQChr04g0120001' => 'han', 'HanXRQChr04g0122561' => 'han', 'HanXRQChr09g0246851' => 'han', 'HanXRQChr10g0293311' => 'han', 'HanXRQChr13g0425231' => 'han', 'HanXRQChr16g0532571' => 'han', 'Haze_09050' => 'cav', 'Haze_15715' => 'cav', 'Haze_15716' => 'cav', 'Haze_16803' => 'cav', 'Haze_16850' => 'cav', 'Hma1.2p1_0301F.1_g118655' => 'hma', 'Hma1.2p1_0309F.1_g120590' => 'hma', 'Hma1.2p1_0936F.1_g238900' => 'hma', 'Hma1.2p1_3552F.1_g336740' => 'hma', 'HPP92_003520' => 'vpl', 'HPP92_006628' => 'vpl', 'HPP92_006645' => 'vpl', 'HPP92_014669' => 'vpl', 'HPP92_015077' => 'vpl', 'Hund16742' => 'sun', 'Hund17022' => 'sun', 'Lalb_Chr02g0152131' => 'lal', 'Lalb_Chr05g0225371' => 'lal', 'Lalb_Chr07g0189841' => 'lal', 'Lalb_Chr07g0192961' => 'lal', 'Lalb_Chr12g0208221' => 'lal', 'Lalb_Chr13g0291211' => 'lal', 'Lalb_Chr13g0291781' => 'lal', 'Lalb_Chr18g0044651' => 'lal', 'Lalb_Chr21g0313731' => 'lal', 'Lj1g0022533' => 'lja', 'Lj2A18T50' => 'lonja', 'Lj2A92G93' => 'lonja', 'Lj3A965T73' => 'lonja', 'Lj3g0000673' => 'lja', 'Lj3g0002666' => 'lja', 'Lj4g0016985' => 'lja', 'Lj5g0003625' => 'lja', 'Lj7A529G36' => 'lonja', 'Lj9A569T49' => 'lonja', 'Lj9A604T63' => 'lonja', 'Lsat_1_v5_gn_3_132060' => 'lsa', 'Lsat_1_v5_gn_4_68941' => 'lsa', 'Lsat_1_v5_gn_5_95580' => 'lsa', 'Lsat_1_v5_gn_7_161' => 'lsa', 'Lsat_1_v5_gn_7_7041' => 'lsa', 'Lsat_1_v5_gn_9_33481' => 'lsa', 'Lsat_1_v5_gn_9_68260' => 'lsa', 'Manes.01G073100' => 'mes', 'Manes.01G266300' => 'mes', 'Manes.02G033300' => 'mes', 'Manes.05G017900' => 'mes', 'Manes.05G046100' => 'mes', 'Manes.08G080900' => 'mes', 'Manes.10G049400' => 'mes', 'Mapoly0009s0186' => 'mpo', 'Mapoly0036s0118' => 'mpo', 'Mapoly0101s0046' => 'mpo', 'MBI04_g30218_MAGBIO' => 'mbi', 'MBI04_g35564_MAGBIO' => 'mbi', 'MBI12_g34011_MAGBIO' => 'mbi', 'MBI14_g04655_MAGBIO' => 'mbi', 'MCO07G653' => 'mco', 'MCO10G173' => 'mco', 'MD01G1087100' => 'mdo', 'MD01G1104200' => 'mdo', 'MD02G1205100' => 'mdo', 'MD04G1079200' => 'mdo', 'MD04G1131400' => 'mdo', 'MD07G1121600' => 'mdo', 'MD07G1157300' => 'mdo', 'MD07G1171000' => 'mdo', 'MD12G1144500' => 'mdo', 'Medtr1g094610' => 'mtr', 'Medtr4g021795' => 'mtr', 'Medtr4g023760' => 'mtr', 'Medtr7g118050' => 'mtr', 'MELO3C005582.2' => 'cme', 'MELO3C005989.2' => 'cme', 'MELO3C006192.2' => 'cme', 'MELO3C009248.2' => 'cme', 'MELO3C019817.2' => 'cme', 'Migut.B01625' => 'egut', 'Migut.B01915' => 'egut', 'Migut.F01721' => 'egut', 'Migut.J00314' => 'egut', 'MSTRG.20742' => 'ama', 'MSTRG.8134' => 'ama', 'Nitab4.5_0000096g0010' => 'nta', 'Nitab4.5_0000202g0030' => 'nta', 'Nitab4.5_0000216g0370' => 'nta', 'Nitab4.5_0000457g0230' => 'nta', 'Nitab4.5_0001702g0170' => 'nta', 'Nitab4.5_0003607g0010' => 'nta', 'Nitab4.5_0004917g0020' => 'nta', 'Nitab4.5_0007059g0010' => 'nta', 'Nitab4.5_0007184g0010' => 'nta', 'Nitab4.5_0007346g0020' => 'nta', 'Nn1g00410' => 'nnu', 'Nn1g01252' => 'nnu', 'Nn2g11168' => 'nnu', 'Nn2g13403' => 'nnu', 'Nn2g13760' => 'nnu', 'Nn4g26380' => 'nnu', 'Oeu000806.2' => 'oeu', 'Oeu005788.1' => 'oeu', 'Oeu006900.3' => 'oeu', 'Oeu007797.1' => 'oeu', 'Oeu011932.1' => 'oeu', 'Oeu022739.1' => 'oeu', 'Oeu037918.1' => 'oeu', 'Oeu055490.2' => 'oeu', 'Os01g0844400' => 'osa', 'Os02g0819100' => 'osa', 'Os03g0804300' => 'osa', 'Os05g0458000' => 'osa', 'Os07g0467800' => 'osa', 'Os12g0602200' => 'osa', 'Peaxi162Scf00013g03444' => 'pax', 'Peaxi162Scf00094g01120' => 'pax', 'Peaxi162Scf00191g01211' => 'pax', 'Peaxi162Scf00238g01110' => 'pax', 'Peaxi162Scf00330g00719' => 'pax', 'Peaxi162Scf00627g00018' => 'pax', 'PGR031G2686' => 'pgr', 'PGR042G0809' => 'pgr', 'PGR142G0193' => 'pgr', 'PGSC0003DMG400011066' => 'stu', 'PGSC0003DMG400012041' => 'stu', 'PGSC0003DMG400013678' => 'stu', 'PGSC0003DMG400023477' => 'stu', 'PGSC0003DMG400025956' => 'stu', 'PGSC0003DMG401019151' => 'stu', 'Phvul.006G116400' => 'pvu', 'Phvul.007G097300' => 'pvu', 'Phvul.010G015000' => 'pvu', 'Phvul.010G083900' => 'pvu', 'Potri.001G117100' => 'ptr', 'Potri.002G147300' => 'ptr', 'Potri.003G115600' => 'ptr', 'Potri.006G087400' => 'ptr', 'Potri.010G226100' => 'ptr', 'Potri.014G069200' => 'ptr', 'Potri.014G104000' => 'ptr', 'Potri.016G100200' => 'ptr', 'Pp3c10_20450' => 'ppa', 'Pp3c1_42400' => 'ppa', 'Pp3c3_24390' => 'ppa', 'Pp3c3_2860' => 'ppa', 'PRCOL_00003193' => 'pco', 'Prupe.2G144500' => 'ppe', 'Prupe.2G195700' => 'ppe', 'Prupe.2G209800' => 'ppe', 'Prupe.5G080000' => 'ppe', 'Prupe.6G257900' => 'ppe', 'Psat3g001160' => 'psa', 'Psat6g181880' => 'psa', 'Psat7g233720' => 'psa', 'PSO063G7587' => 'pso', 'PSO339G2145' => 'pso', 'PSO339G3369' => 'pso', 'PSO478G2747' => 'pso', 'PSO513G0140' => 'pso', 'PSO782G1614' => 'pso', 'PSO782G4889' => 'pso', 'PSO782G5485' => 'pso', 'PSO801G0241' => 'pso', 'QL07p048854' => 'qlo', 'QL08p046745' => 'qlo', 'QL08p052606' => 'qlo', 'QL08p053414' => 'qlo', 'QL08p054868' => 'qlo', 'RcHm_v2.0_Chr1g0350251' => 'rch', 'RcHm_v2.0_Chr1g0360851' => 'rch', 'RcHm_v2.0_Chr1g0362791' => 'rch', 'RcHm_v2.0_Chr3g0466281' => 'rch', 'RcHm_v2.0_Chr7g0201481' => 'rch', 'Rhsim01G0148600' => 'rsi', 'Rhsim05G0194400' => 'rsi', 'Rhsim07G0000700' => 'rsi', 'Rhsim07G0000800' => 'rsi', 'Rhsim07G0027900' => 'rsi', 'Rhsim09G0149500' => 'rsi', 'RhsimUnG0186900' => 'rsi', 'Sabra01G0089900' => 'sbr', 'Sabra02G0114700' => 'sbr', 'Sabra02G0116300' => 'sbr', 'Sabra03G0080100' => 'sbr', 'Sabra08G0024300' => 'sbr', 'Sabra10G0174300' => 'sbr', 'Sabra14G0048900' => 'sbr', 'Sabra14G0076500' => 'sbr', 'SalBow5G2513' => 'sbo', 'Sc01g0002300' => 'sci', 'Sc01g0004450' => 'sci', 'Sc06g0001680' => 'sci', 'Sc23g0003580' => 'sci', 'Sed0000913' => 'sed', 'Sed0001655' => 'sed', 'Sed0007745' => 'sed', 'Sed0010951' => 'sed', 'Sed0017599' => 'sed', 'Sed0021405' => 'sed', 'Sed0022810' => 'sed', 'SEGI_07099' => 'sgi', 'SEGI_11931' => 'sgi', 'SEGI_13187' => 'sgi', 'SEGI_29958' => 'sgi', 'SEGI_36351' => 'sgi', 'SGA_v2.0_scaffold126G33770' => 'sas', 'SGA_v2.0_scaffold153G37003' => 'sas', 'SGA_v2.0_scaffold2G01359' => 'sas', 'SGA_v2.0_scaffold5G03064' => 'sas', 'SGA_v2.0_scaffold95G28903' => 'sas', 'SHI12701' => 'shi', 'SHI26410' => 'shi', 'SHI38997' => 'shi', 'SHI53759' => 'shi', 'SHI53886' => 'shi', 'SHI54714' => 'shi', 'SMO011G0041' => 'smo', 'SMO146G0251' => 'smo', 'SMO160G0004' => 'smo', 'SMO174G0057' => 'smo', 'SMO244G0089' => 'smo', 'SMO296G0011' => 'smo', 'Solyc01g091280.3' => 'sly', 'Solyc05g047610.3' => 'sly', 'Solyc05g047640.3' => 'sly', 'Solyc05g055630.3' => 'sly', 'Solyc10g018160.2' => 'sly', 'Solyc10g084820.2' => 'sly', 'Solyc10g086565.2' => 'sly', 'Sopen01g037030' => 'spe', 'Sopen05g027920' => 'spe', 'Sopen05g034070' => 'spe', 'Sopen10g007260' => 'spe', 'Sopen10g034260' => 'spe', 'Sopen10g035950' => 'spe', 'Sp3g07710' => 'spa', 'Sp4g27420' => 'spa', 'Sp5g02450' => 'spa', 'Sp6g01280' => 'spa', 'Sp6g38480' => 'spa', 'Sp7g20780' => 'spa', 'TAR374G1413' => 'tar', 'TAR623G1777' => 'tar', 'TAR629G2370' => 'tar', 'TAR633G1759' => 'tar', 'TAR636G3387' => 'tar', 'THA.LOC104802447' => 'tha', 'THA.LOC104813916' => 'tha', 'THA.LOC104816423' => 'tha', 'THA.LOC104817246' => 'tha', 'THA.LOC104825895' => 'tha', 'Thecc.01G335200' => 'tca', 'Thecc.01G377400' => 'tca', 'Thecc.03G262200' => 'tca', 'Thecc.05G036800' => 'tca', 'Thecc.10G080500' => 'tca', 'Thecc.10G080800' => 'tca', 'Thhalv10001560m.g' => 'esa', 'Thhalv10006120m.g' => 'esa', 'Thhalv10014375m.g' => 'esa', 'Thhalv10021264m.g' => 'esa', 'Thhalv10028856m.g' => 'esa', 'TPR.G1914' => 'tpr', 'TPR.G4757' => 'tpr', 'TPR.G5595' => 'tpr', 'TWI14G0952' => 'twi', 'TWI14G1307' => 'twi', 'TWI38G2143' => 'twi', 'TWI59G0826' => 'twi', 'TWI77G0527' => 'twi', 'TWI81G0150' => 'twi', 'unitig_21.g21018' => 'ugi', 'unitig_26.g9725' => 'ugi', 'unitig_744.g24653' => 'ugi', 'unitig_749.g13778' => 'ugi', 'unitig_899.g15035' => 'ugi', 'vmacro04296' => 'vma', 'vmacro04852' => 'vma', 'vmacro13404' => 'vma', 'vmacro20169' => 'vma', 'vmacro21014' => 'vma', 'VMungo0331G0237' => 'vmu', 'VMungo0331G0706' => 'vmu', 'VMungo0331G1361' => 'vmu', 'VMungo0331G1489' => 'vmu', 'VMungo0540G1037' => 'vmu', 'VMungo0720G2487' => 'vmu', 'VMungo0720G2721' => 'vmu', 'Zm00001eb086860' => 'zma', 'Zm00001eb104760' => 'zma', 'Zm00001eb148220' => 'zma', 'Zm00001eb259030' => 'zma', 'Zm00001eb289590' => 'zma', 'Zm00001eb420150' => 'zma' ), 'gf_id' => 'HOM05D000968', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000968' ), 'data_identifier' => 'HOM05D000968', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000968', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p31690' => 'bna', 'A03p36040' => 'bna', 'A03p53730' => 'bna', 'A04p01410' => 'bna', 'A05p05420' => 'bna', 'A05p39630' => 'bna', 'A05p39640' => 'bna', 'A09p00970' => 'bna', 'A09p53060' => 'bna', 'A10p31890' => 'bna', 'Aa31LG10G15040' => 'aar', 'Aa31LG1G21090' => 'aar', 'Aa31LG1G26900' => 'aar', 'Aa31LG3G1820' => 'aar', 'Aa31LG5G1100' => 'aar', 'Aa31LG6G4740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2265' => 'aag', 'Actinidia07998' => 'ach', 'Actinidia11266' => 'ach', 'Actinidia12682' => 'ach', 'Actinidia26479' => 'ach', 'Actinidia31406' => 'ach', 'Actinidia32437' => 'ach', 'Actinidia38862' => 'ach', 'Ah.05g174230' => 'amhyb', 'Ah.05g179070' => 'amhyb', 'Ah.05g179090' => 'amhyb', 'Ah.12g059950' => 'amhyb', 'AL3G20480' => 'aly', 'AL4G44520' => 'aly', 'AL5G43110' => 'aly', 'AL6G13890' => 'aly', 'AL6G52620' => 'aly', 'AL7G30830' => 'aly', 'Aqoxy1G00899' => 'aox', 'Aqoxy5G04333' => 'aox', 'Aqoxy7G00641' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3IZ0NN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4EF6AW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W9P8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79GA3M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C43NQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFCU6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G95YVJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCHK29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LU1UG8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX91RN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGB4B1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8DA0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9H7JI' => 'arhy', 'AT3G09320' => 'ath', 'AT3G60800' => 'ath', 'AT4G00840' => 'ath', 'AT4G22750' => 'ath', 'AT5G04270' => 'ath', 'ATR0090G003' => 'atr', 'ATR0559G349' => 'atr', 'ATR0680G261' => 'atr', 'ATR0810G048' => 'atr', 'Atru.chr12.831' => 'acertr', 'Atru.chr5.303' => 'acertr', 'Atru.chr5.748' => 'acertr', 'Atru.chr8.1999' => 'acertr', 'Atru.chr9.1436' => 'acertr', 'AUR62004211' => 'cqu', 'AUR62004548' => 'cqu', 'AUR62013637' => 'cqu', 'AUR62022662' => 'cqu', 'AUR62025777' => 'cqu', 'AUR62042386' => 'cqu', 'BcaB01g02310' => 'bca', 'BcaB01g06062' => 'bca', 'BcaB02g08975' => 'bca', 'BcaB02g08980' => 'bca', 'BcaC01g04228' => 'bca', 'BcaC01g06830' => 'bca', 'BcaC02g10186' => 'bca', 'BcaC02g12214' => 'bca', 'BcaC04g24101' => 'bca', 'BcaC05g29520' => 'bca', 'BcaC05g29661' => 'bca', 'BcaC06g32130' => 'bca', 'BcaC06g32131' => 'bca', 'BcaC07g40601' => 'bca', 'BcaC07g42641' => 'bca', 'BcaNung01038' => 'bca', 'BcaNung01676' => 'bca', 'BcaNung02480' => 'bca', 'BcaNung07376' => 'bca', 'BolC3t16146H' => 'bol', 'BolC3t16637H' => 'bol', 'BolC4t22257H' => 'bol', 'BolC4t24728H' => 'bol', 'BolC5t34517H' => 'bol', 'BolC7t45703H' => 'bol', 'BolC8t51166H' => 'bol', 'BolC9t53038H' => 'bol', 'BolC9t60000H' => 'bol', 'BraA01t01345Z' => 'bra', 'BraA01t01346Z' => 'bra', 'BraA01t01348Z' => 'bra', 'BraA03t12347Z' => 'bra', 'BraA03t12775Z' => 'bra', 'BraA03t14439Z' => 'bra', 'BraA04t15860Z' => 'bra', 'BraA05t19511Z' => 'bra', 'BraA05t22746Z' => 'bra', 'BraA09t35767Z' => 'bra', 'BraA09t40732Z' => 'bra', 'BraA10t45233Z' => 'bra', 'C03p38720' => 'bna', 'C03p43680' => 'bna', 'C04p06350' => 'bna', 'C04p31800' => 'bna', 'C05p58680' => 'bna', 'C07p52110' => 'bna', 'C08p35760' => 'bna', 'C09p01050' => 'bna', 'C09p72600' => 'bna', 'CAN.G106.2' => 'can', 'CAN.G1482.1' => 'can', 'CAN.G324.12' => 'can', 'CAN.G388.20' => 'can', 'CAN.G412.7' => 'can', 'CAN.G694.32' => 'can', 'CAN.G92.12' => 'can', 'CANSAT11G2353' => 'cansat', 'CANSAT21G1398' => 'cansat', 'CANSAT56G2456' => 'cansat', 'CANSAT56G3031' => 'cansat', 'CANSAT56G4539' => 'cansat', 'CARHR083680' => 'chi', 'CARHR171190' => 'chi', 'CARHR209010' => 'chi', 'CARHR229680' => 'chi', 'CARHR249490' => 'chi', 'Carub.0003s0844' => 'cru', 'Carub.0005s2755' => 'cru', 'Carub.0006s0322' => 'cru', 'Carub.0006s3586' => 'cru', 'Carub.0007s1855' => 'cru', 'Ca_07808_v3' => 'car', 'Ca_09535_v3' => 'car', 'Ca_10548_v3' => 'car', 'Ca_19913_v3' => 'car', 'Ca_19916_v3' => 'car', 'Ca_19975_v3' => 'car', 'CBR_g22876' => 'cbr', 'CBR_g22879' => 'cbr', 'CBR_g38491' => 'cbr', 'CBR_g54185' => 'cbr', 'CBR_g54190' => 'cbr', 'Cc02_g11020' => 'ccan', 'Cc02_g23920' => 'ccan', 'Cc02_g39860' => 'ccan', 'Cc02_g39870' => 'ccan', 'Cc03_g06760' => 'ccan', 'Cc06_g02450' => 'ccan', 'Cc09_g09450' => 'ccan', 'CDE02G1959' => 'cde', 'CDE04G0600' => 'cde', 'CDE07G1996' => 'cde', 'CDE07G2078' => 'cde', 'CDE11G0611' => 'cde', 'Cfa001683' => 'cfa', 'Cfa001734' => 'cfa', 'Cfa001737' => 'cfa', 'Cfa003751' => 'cfa', 'Cfa012019' => 'cfa', 'Cfa017353' => 'cfa', 'Cfa017732' => 'cfa', 'Cfa022464' => 'cfa', 'Ciclev10012400m.g' => 'ccl', 'Ciclev10021242m.g' => 'ccl', 'Ciclev10021302m.g' => 'ccl', 'Ciclev10021463m.g' => 'ccl', 'Ciclev10032359m.g' => 'ccl', 'CiPaw.01G081000' => 'cil', 'CiPaw.01G262500' => 'cil', 'CiPaw.01G269800' => 'cil', 'CiPaw.02G168400' => 'cil', 'CiPaw.05G119500' => 'cil', 'CiPaw.11G147300' => 'cil', 'ClCG01G003630' => 'cla', 'ClCG05G000510' => 'cla', 'ClCG05G002300' => 'cla', 'ClCG08G007650' => 'cla', 'ClCG10G021250' => 'cla', 'COL.COLO4_06218' => 'col', 'COL.COLO4_12538' => 'col', 'COL.COLO4_14775' => 'col', 'COL.COLO4_23875' => 'col', 'Cpa.g.sc141.16' => 'cpa', 'Cpa.g.sc169.16' => 'cpa', 'Cpa.g.sc244.4' => 'cpa', 'Cpa.g.sc244.5' => 'cpa', 'Cpa.g.sc29.87' => 'cpa', 'Cpa.g.sc53.115' => 'cpa', 'Cre03.g207502' => 'cre', 'Cre06.g277000' => 'cre', 'Cre09.g394050' => 'cre', 'CsaV3_3G007680' => 'csa', 'CsaV3_3G009710' => 'csa', 'CsaV3_3G034790' => 'csa', 'CsaV3_5G003750' => 'csa', 'CsaV3_6G036620' => 'csa', 'CSS0002288' => 'camsi', 'CSS0011250' => 'camsi', 'CSS0021619' => 'camsi', 'CSS0046701' => 'camsi', 'DCAR_006420' => 'dca', 'DCAR_006865' => 'dca', 'DCAR_008558' => 'dca', 'DCAR_028754' => 'dca', 'DCAR_028755' => 'dca', 'Dinv31218' => 'din', 'Dinv32371' => 'din', 'Dinv34250' => 'din', 'Dinv37156' => 'din', 'Dinv43704' => 'din', 'Duzib093G1811' => 'dzi', 'Duzib106G1622' => 'dzi', 'Duzib114G0504' => 'dzi', 'Duzib128G0338' => 'dzi', 'Duzib128G1577' => 'dzi', 'Duzib133G0104' => 'dzi', 'Duzib133G1080' => 'dzi', 'Duzib138G0324' => 'dzi', 'Duzib138G0394' => 'dzi', 'Duzib205G0122' => 'dzi', 'Duzib268G1020' => 'dzi', 'Duzib268G1359' => 'dzi', 'ECA232G3929' => 'eca', 'ECA236G2210' => 'eca', 'ECA236G2287' => 'eca', 'ECA240G4568' => 'eca', 'ECA247G0894' => 'eca', 'EL10Ac1g00200' => 'bvu', 'EL10Ac1g00886' => 'bvu', 'EL10As1g23091' => 'bvu', 'EL10As1g23092' => 'bvu', 'Eucgr.A01284' => 'egr', 'Eucgr.A01285' => 'egr', 'Eucgr.D02456' => 'egr', 'Eucgr.E00018' => 'egr', 'Eucgr.E01439' => 'egr', 'Eucgr.G02859' => 'egr', 'FAN01G0168' => 'fan', 'FAN01G0453' => 'fan', 'FAN01G2761' => 'fan', 'FAN02G1239' => 'fan', 'FAN03G0645' => 'fan', 'FAN03G2707' => 'fan', 'FAN03G2978' => 'fan', 'FAN04G0227' => 'fan', 'FAN06G0091' => 'fan', 'FAN06G1418' => 'fan', 'FAN06G1512' => 'fan', 'FAN06G1986' => 'fan', 'FAN06G2905' => 'fan', 'FAN06G4325' => 'fan', 'FAN08G0033' => 'fan', 'FAN09G0642' => 'fan', 'FAN10G1763' => 'fan', 'FAN10G2026' => 'fan', 'FAN10G2513' => 'fan', 'FAN10G3402' => 'fan', 'FAN10G3564' => 'fan', 'FAN10G3987' => 'fan', 'FAN13G1490' => 'fan', 'FAN14G5857' => 'fan', 'FAN18G1188' => 'fan', 'FvH4_5g00750' => 'fve', 'FvH4_6g13410' => 'fve', 'FvH4_7g11740' => 'fve', 'FvH4_7g17410' => 'fve', 'FvH4_7g18860' => 'fve', 'Glyma.01G099100' => 'gma', 'Glyma.01G142300' => 'gma', 'Glyma.03G025500' => 'gma', 'Glyma.03G069700' => 'gma', 'Glyma.03G260000' => 'gma', 'Glyma.09G269800' => 'gma', 'Glyma.10G208700' => 'gma', 'Glyma.18G220400' => 'gma', 'Glyma.20G182000' => 'gma', 'Gohir.A01G221726' => 'ghi', 'Gohir.A07G134600' => 'ghi', 'Gohir.A07G146000' => 'ghi', 'Gohir.A08G173900' => 'ghi', 'Gohir.A09G194900' => 'ghi', 'Gohir.A10G204100' => 'ghi', 'Gohir.A11G080600' => 'ghi', 'Gohir.A11G327500' => 'ghi', 'Gohir.A12G101800' => 'ghi', 'Gohir.D01G211200' => 'ghi', 'Gohir.D07G139200' => 'ghi', 'Gohir.D07G152100' => 'ghi', 'Gohir.D08G192600' => 'ghi', 'Gohir.D09G189200' => 'ghi', 'Gohir.D10G212000' => 'ghi', 'Gohir.D11G085200' => 'ghi', 'Gohir.D11G346400' => 'ghi', 'Gohir.D12G104800' => 'ghi', 'Gorai.001G151300' => 'gra', 'Gorai.001G174100' => 'gra', 'Gorai.002G257000' => 'gra', 'Gorai.004G202600' => 'gra', 'Gorai.007G090900' => 'gra', 'Gorai.007G376700' => 'gra', 'Gorai.008G114100' => 'gra', 'Gorai.011G237900' => 'gra', 'GSVIVG01005450001' => 'vvi', 'GSVIVG01016232001' => 'vvi', 'GSVIVG01026157001' => 'vvi', 'GSVIVG01027419001' => 'vvi', 'GSVIVG01027631001' => 'vvi', 'GSVIVG01034143001' => 'vvi', 'HanXRQChr03g0093921' => 'han', 'HanXRQChr04g0120001' => 'han', 'HanXRQChr04g0122561' => 'han', 'HanXRQChr09g0246851' => 'han', 'HanXRQChr10g0293311' => 'han', 'HanXRQChr13g0425231' => 'han', 'HanXRQChr16g0532571' => 'han', 'Haze_09050' => 'cav', 'Haze_15715' => 'cav', 'Haze_15716' => 'cav', 'Haze_16803' => 'cav', 'Haze_16850' => 'cav', 'Hma1.2p1_0301F.1_g118655' => 'hma', 'Hma1.2p1_0309F.1_g120590' => 'hma', 'Hma1.2p1_0936F.1_g238900' => 'hma', 'Hma1.2p1_3552F.1_g336740' => 'hma', 'HPP92_003520' => 'vpl', 'HPP92_006628' => 'vpl', 'HPP92_006645' => 'vpl', 'HPP92_014669' => 'vpl', 'HPP92_015077' => 'vpl', 'Hund16742' => 'sun', 'Hund17022' => 'sun', 'Lalb_Chr02g0152131' => 'lal', 'Lalb_Chr05g0225371' => 'lal', 'Lalb_Chr07g0189841' => 'lal', 'Lalb_Chr07g0192961' => 'lal', 'Lalb_Chr12g0208221' => 'lal', 'Lalb_Chr13g0291211' => 'lal', 'Lalb_Chr13g0291781' => 'lal', 'Lalb_Chr18g0044651' => 'lal', 'Lalb_Chr21g0313731' => 'lal', 'Lj1g0022533' => 'lja', 'Lj2A18T50' => 'lonja', 'Lj2A92G93' => 'lonja', 'Lj3A965T73' => 'lonja', 'Lj3g0000673' => 'lja', 'Lj3g0002666' => 'lja', 'Lj4g0016985' => 'lja', 'Lj5g0003625' => 'lja', 'Lj7A529G36' => 'lonja', 'Lj9A569T49' => 'lonja', 'Lj9A604T63' => 'lonja', 'Lsat_1_v5_gn_3_132060' => 'lsa', 'Lsat_1_v5_gn_4_68941' => 'lsa', 'Lsat_1_v5_gn_5_95580' => 'lsa', 'Lsat_1_v5_gn_7_161' => 'lsa', 'Lsat_1_v5_gn_7_7041' => 'lsa', 'Lsat_1_v5_gn_9_33481' => 'lsa', 'Lsat_1_v5_gn_9_68260' => 'lsa', 'Manes.01G073100' => 'mes', 'Manes.01G266300' => 'mes', 'Manes.02G033300' => 'mes', 'Manes.05G017900' => 'mes', 'Manes.05G046100' => 'mes', 'Manes.08G080900' => 'mes', 'Manes.10G049400' => 'mes', 'Mapoly0009s0186' => 'mpo', 'Mapoly0036s0118' => 'mpo', 'Mapoly0101s0046' => 'mpo', 'MBI04_g30218_MAGBIO' => 'mbi', 'MBI04_g35564_MAGBIO' => 'mbi', 'MBI12_g34011_MAGBIO' => 'mbi', 'MBI14_g04655_MAGBIO' => 'mbi', 'MCO07G653' => 'mco', 'MCO10G173' => 'mco', 'MD01G1087100' => 'mdo', 'MD01G1104200' => 'mdo', 'MD02G1205100' => 'mdo', 'MD04G1079200' => 'mdo', 'MD04G1131400' => 'mdo', 'MD07G1121600' => 'mdo', 'MD07G1157300' => 'mdo', 'MD07G1171000' => 'mdo', 'MD12G1144500' => 'mdo', 'Medtr1g094610' => 'mtr', 'Medtr4g021795' => 'mtr', 'Medtr4g023760' => 'mtr', 'Medtr7g118050' => 'mtr', 'MELO3C005582.2' => 'cme', 'MELO3C005989.2' => 'cme', 'MELO3C006192.2' => 'cme', 'MELO3C009248.2' => 'cme', 'MELO3C019817.2' => 'cme', 'Migut.B01625' => 'egut', 'Migut.B01915' => 'egut', 'Migut.F01721' => 'egut', 'Migut.J00314' => 'egut', 'MSTRG.20742' => 'ama', 'MSTRG.8134' => 'ama', 'Nitab4.5_0000096g0010' => 'nta', 'Nitab4.5_0000202g0030' => 'nta', 'Nitab4.5_0000216g0370' => 'nta', 'Nitab4.5_0000457g0230' => 'nta', 'Nitab4.5_0001702g0170' => 'nta', 'Nitab4.5_0003607g0010' => 'nta', 'Nitab4.5_0004917g0020' => 'nta', 'Nitab4.5_0007059g0010' => 'nta', 'Nitab4.5_0007184g0010' => 'nta', 'Nitab4.5_0007346g0020' => 'nta', 'Nn1g00410' => 'nnu', 'Nn1g01252' => 'nnu', 'Nn2g11168' => 'nnu', 'Nn2g13403' => 'nnu', 'Nn2g13760' => 'nnu', 'Nn4g26380' => 'nnu', 'Oeu000806.2' => 'oeu', 'Oeu005788.1' => 'oeu', 'Oeu006900.3' => 'oeu', 'Oeu007797.1' => 'oeu', 'Oeu011932.1' => 'oeu', 'Oeu022739.1' => 'oeu', 'Oeu037918.1' => 'oeu', 'Oeu055490.2' => 'oeu', 'Os01g0844400' => 'osa', 'Os02g0819100' => 'osa', 'Os03g0804300' => 'osa', 'Os05g0458000' => 'osa', 'Os07g0467800' => 'osa', 'Os12g0602200' => 'osa', 'Peaxi162Scf00013g03444' => 'pax', 'Peaxi162Scf00094g01120' => 'pax', 'Peaxi162Scf00191g01211' => 'pax', 'Peaxi162Scf00238g01110' => 'pax', 'Peaxi162Scf00330g00719' => 'pax', 'Peaxi162Scf00627g00018' => 'pax', 'PGR031G2686' => 'pgr', 'PGR042G0809' => 'pgr', 'PGR142G0193' => 'pgr', 'PGSC0003DMG400011066' => 'stu', 'PGSC0003DMG400012041' => 'stu', 'PGSC0003DMG400013678' => 'stu', 'PGSC0003DMG400023477' => 'stu', 'PGSC0003DMG400025956' => 'stu', 'PGSC0003DMG401019151' => 'stu', 'Phvul.006G116400' => 'pvu', 'Phvul.007G097300' => 'pvu', 'Phvul.010G015000' => 'pvu', 'Phvul.010G083900' => 'pvu', 'Potri.001G117100' => 'ptr', 'Potri.002G147300' => 'ptr', 'Potri.003G115600' => 'ptr', 'Potri.006G087400' => 'ptr', 'Potri.010G226100' => 'ptr', 'Potri.014G069200' => 'ptr', 'Potri.014G104000' => 'ptr', 'Potri.016G100200' => 'ptr', 'Pp3c10_20450' => 'ppa', 'Pp3c1_42400' => 'ppa', 'Pp3c3_24390' => 'ppa', 'Pp3c3_2860' => 'ppa', 'PRCOL_00003193' => 'pco', 'Prupe.2G144500' => 'ppe', 'Prupe.2G195700' => 'ppe', 'Prupe.2G209800' => 'ppe', 'Prupe.5G080000' => 'ppe', 'Prupe.6G257900' => 'ppe', 'Psat3g001160' => 'psa', 'Psat6g181880' => 'psa', 'Psat7g233720' => 'psa', 'PSO063G7587' => 'pso', 'PSO339G2145' => 'pso', 'PSO339G3369' => 'pso', 'PSO478G2747' => 'pso', 'PSO513G0140' => 'pso', 'PSO782G1614' => 'pso', 'PSO782G4889' => 'pso', 'PSO782G5485' => 'pso', 'PSO801G0241' => 'pso', 'QL07p048854' => 'qlo', 'QL08p046745' => 'qlo', 'QL08p052606' => 'qlo', 'QL08p053414' => 'qlo', 'QL08p054868' => 'qlo', 'RcHm_v2.0_Chr1g0350251' => 'rch', 'RcHm_v2.0_Chr1g0360851' => 'rch', 'RcHm_v2.0_Chr1g0362791' => 'rch', 'RcHm_v2.0_Chr3g0466281' => 'rch', 'RcHm_v2.0_Chr7g0201481' => 'rch', 'Rhsim01G0148600' => 'rsi', 'Rhsim05G0194400' => 'rsi', 'Rhsim07G0000700' => 'rsi', 'Rhsim07G0000800' => 'rsi', 'Rhsim07G0027900' => 'rsi', 'Rhsim09G0149500' => 'rsi', 'RhsimUnG0186900' => 'rsi', 'Sabra01G0089900' => 'sbr', 'Sabra02G0114700' => 'sbr', 'Sabra02G0116300' => 'sbr', 'Sabra03G0080100' => 'sbr', 'Sabra08G0024300' => 'sbr', 'Sabra10G0174300' => 'sbr', 'Sabra14G0048900' => 'sbr', 'Sabra14G0076500' => 'sbr', 'SalBow5G2513' => 'sbo', 'Sc01g0002300' => 'sci', 'Sc01g0004450' => 'sci', 'Sc06g0001680' => 'sci', 'Sc23g0003580' => 'sci', 'Sed0000913' => 'sed', 'Sed0001655' => 'sed', 'Sed0007745' => 'sed', 'Sed0010951' => 'sed', 'Sed0017599' => 'sed', 'Sed0021405' => 'sed', 'Sed0022810' => 'sed', 'SEGI_07099' => 'sgi', 'SEGI_11931' => 'sgi', 'SEGI_13187' => 'sgi', 'SEGI_29958' => 'sgi', 'SEGI_36351' => 'sgi', 'SGA_v2.0_scaffold126G33770' => 'sas', 'SGA_v2.0_scaffold153G37003' => 'sas', 'SGA_v2.0_scaffold2G01359' => 'sas', 'SGA_v2.0_scaffold5G03064' => 'sas', 'SGA_v2.0_scaffold95G28903' => 'sas', 'SHI12701' => 'shi', 'SHI26410' => 'shi', 'SHI38997' => 'shi', 'SHI53759' => 'shi', 'SHI53886' => 'shi', 'SHI54714' => 'shi', 'SMO011G0041' => 'smo', 'SMO146G0251' => 'smo', 'SMO160G0004' => 'smo', 'SMO174G0057' => 'smo', 'SMO244G0089' => 'smo', 'SMO296G0011' => 'smo', 'Solyc01g091280.3' => 'sly', 'Solyc05g047610.3' => 'sly', 'Solyc05g047640.3' => 'sly', 'Solyc05g055630.3' => 'sly', 'Solyc10g018160.2' => 'sly', 'Solyc10g084820.2' => 'sly', 'Solyc10g086565.2' => 'sly', 'Sopen01g037030' => 'spe', 'Sopen05g027920' => 'spe', 'Sopen05g034070' => 'spe', 'Sopen10g007260' => 'spe', 'Sopen10g034260' => 'spe', 'Sopen10g035950' => 'spe', 'Sp3g07710' => 'spa', 'Sp4g27420' => 'spa', 'Sp5g02450' => 'spa', 'Sp6g01280' => 'spa', 'Sp6g38480' => 'spa', 'Sp7g20780' => 'spa', 'TAR374G1413' => 'tar', 'TAR623G1777' => 'tar', 'TAR629G2370' => 'tar', 'TAR633G1759' => 'tar', 'TAR636G3387' => 'tar', 'THA.LOC104802447' => 'tha', 'THA.LOC104813916' => 'tha', 'THA.LOC104816423' => 'tha', 'THA.LOC104817246' => 'tha', 'THA.LOC104825895' => 'tha', 'Thecc.01G335200' => 'tca', 'Thecc.01G377400' => 'tca', 'Thecc.03G262200' => 'tca', 'Thecc.05G036800' => 'tca', 'Thecc.10G080500' => 'tca', 'Thecc.10G080800' => 'tca', 'Thhalv10001560m.g' => 'esa', 'Thhalv10006120m.g' => 'esa', 'Thhalv10014375m.g' => 'esa', 'Thhalv10021264m.g' => 'esa', 'Thhalv10028856m.g' => 'esa', 'TPR.G1914' => 'tpr', 'TPR.G4757' => 'tpr', 'TPR.G5595' => 'tpr', 'TWI14G0952' => 'twi', 'TWI14G1307' => 'twi', 'TWI38G2143' => 'twi', 'TWI59G0826' => 'twi', 'TWI77G0527' => 'twi', 'TWI81G0150' => 'twi', 'unitig_21.g21018' => 'ugi', 'unitig_26.g9725' => 'ugi', 'unitig_744.g24653' => 'ugi', 'unitig_749.g13778' => 'ugi', 'unitig_899.g15035' => 'ugi', 'vmacro04296' => 'vma', 'vmacro04852' => 'vma', 'vmacro13404' => 'vma', 'vmacro20169' => 'vma', 'vmacro21014' => 'vma', 'VMungo0331G0237' => 'vmu', 'VMungo0331G0706' => 'vmu', 'VMungo0331G1361' => 'vmu', 'VMungo0331G1489' => 'vmu', 'VMungo0540G1037' => 'vmu', 'VMungo0720G2487' => 'vmu', 'VMungo0720G2721' => 'vmu', 'Zm00001eb086860' => 'zma', 'Zm00001eb104760' => 'zma', 'Zm00001eb148220' => 'zma', 'Zm00001eb259030' => 'zma', 'Zm00001eb289590' => 'zma', 'Zm00001eb420150' => 'zma' ) $gf_id = 'HOM05D000968' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000968' ) $data_identifier = 'HOM05D000968' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 19, 'bol' => (int) 9, 'bra' => (int) 12, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 5, 'ccan' => (int) 7, 'cde' => (int) 5, 'cfa' => (int) 8, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 4, 'dca' => (int) 5, 'din' => (int) 5, 'dzi' => (int) 12, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 25, 'fve' => (int) 5, 'gma' => (int) 9, 'ghi' => (int) 18, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 7, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 5, 'sun' => (int) 2, 'lal' => (int) 9, 'lja' => (int) 5, 'lonja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 9, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 2, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 3, 'stu' => (int) 6, 'pvu' => (int) 4, 'ptr' => (int) 8, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 3, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 1, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 5, 'sas' => (int) 5, 'shi' => (int) 6, 'smo' => (int) 6, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 3, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420150' $species_info = array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ) $local_species = 'osa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000968', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p31690' => 'bna', 'A03p36040' => 'bna', 'A03p53730' => 'bna', 'A04p01410' => 'bna', 'A05p05420' => 'bna', 'A05p39630' => 'bna', 'A05p39640' => 'bna', 'A09p00970' => 'bna', 'A09p53060' => 'bna', 'A10p31890' => 'bna', 'Aa31LG10G15040' => 'aar', 'Aa31LG1G21090' => 'aar', 'Aa31LG1G26900' => 'aar', 'Aa31LG3G1820' => 'aar', 'Aa31LG5G1100' => 'aar', 'Aa31LG6G4740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2265' => 'aag', 'Actinidia07998' => 'ach', 'Actinidia11266' => 'ach', 'Actinidia12682' => 'ach', 'Actinidia26479' => 'ach', 'Actinidia31406' => 'ach', 'Actinidia32437' => 'ach', 'Actinidia38862' => 'ach', 'Ah.05g174230' => 'amhyb', 'Ah.05g179070' => 'amhyb', 'Ah.05g179090' => 'amhyb', 'Ah.12g059950' => 'amhyb', 'AL3G20480' => 'aly', 'AL4G44520' => 'aly', 'AL5G43110' => 'aly', 'AL6G13890' => 'aly', 'AL6G52620' => 'aly', 'AL7G30830' => 'aly', 'Aqoxy1G00899' => 'aox', 'Aqoxy5G04333' => 'aox', 'Aqoxy7G00641' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3IZ0NN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4EF6AW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W9P8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79GA3M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C43NQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFCU6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G95YVJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCHK29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LU1UG8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX91RN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGB4B1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8DA0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9H7JI' => 'arhy', 'AT3G09320' => 'ath', 'AT3G60800' => 'ath', 'AT4G00840' => 'ath', 'AT4G22750' => 'ath', 'AT5G04270' => 'ath', 'ATR0090G003' => 'atr', 'ATR0559G349' => 'atr', 'ATR0680G261' => 'atr', 'ATR0810G048' => 'atr', 'Atru.chr12.831' => 'acertr', 'Atru.chr5.303' => 'acertr', 'Atru.chr5.748' => 'acertr', 'Atru.chr8.1999' => 'acertr', 'Atru.chr9.1436' => 'acertr', 'AUR62004211' => 'cqu', 'AUR62004548' => 'cqu', 'AUR62013637' => 'cqu', 'AUR62022662' => 'cqu', 'AUR62025777' => 'cqu', 'AUR62042386' => 'cqu', 'BcaB01g02310' => 'bca', 'BcaB01g06062' => 'bca', 'BcaB02g08975' => 'bca', 'BcaB02g08980' => 'bca', 'BcaC01g04228' => 'bca', 'BcaC01g06830' => 'bca', 'BcaC02g10186' => 'bca', 'BcaC02g12214' => 'bca', 'BcaC04g24101' => 'bca', 'BcaC05g29520' => 'bca', 'BcaC05g29661' => 'bca', 'BcaC06g32130' => 'bca', 'BcaC06g32131' => 'bca', 'BcaC07g40601' => 'bca', 'BcaC07g42641' => 'bca', 'BcaNung01038' => 'bca', 'BcaNung01676' => 'bca', 'BcaNung02480' => 'bca', 'BcaNung07376' => 'bca', 'BolC3t16146H' => 'bol', 'BolC3t16637H' => 'bol', 'BolC4t22257H' => 'bol', 'BolC4t24728H' => 'bol', 'BolC5t34517H' => 'bol', 'BolC7t45703H' => 'bol', 'BolC8t51166H' => 'bol', 'BolC9t53038H' => 'bol', 'BolC9t60000H' => 'bol', 'BraA01t01345Z' => 'bra', 'BraA01t01346Z' => 'bra', 'BraA01t01348Z' => 'bra', 'BraA03t12347Z' => 'bra', 'BraA03t12775Z' => 'bra', 'BraA03t14439Z' => 'bra', 'BraA04t15860Z' => 'bra', 'BraA05t19511Z' => 'bra', 'BraA05t22746Z' => 'bra', 'BraA09t35767Z' => 'bra', 'BraA09t40732Z' => 'bra', 'BraA10t45233Z' => 'bra', 'C03p38720' => 'bna', 'C03p43680' => 'bna', 'C04p06350' => 'bna', 'C04p31800' => 'bna', 'C05p58680' => 'bna', 'C07p52110' => 'bna', 'C08p35760' => 'bna', 'C09p01050' => 'bna', 'C09p72600' => 'bna', 'CAN.G106.2' => 'can', 'CAN.G1482.1' => 'can', 'CAN.G324.12' => 'can', 'CAN.G388.20' => 'can', 'CAN.G412.7' => 'can', 'CAN.G694.32' => 'can', 'CAN.G92.12' => 'can', 'CANSAT11G2353' => 'cansat', 'CANSAT21G1398' => 'cansat', 'CANSAT56G2456' => 'cansat', 'CANSAT56G3031' => 'cansat', 'CANSAT56G4539' => 'cansat', 'CARHR083680' => 'chi', 'CARHR171190' => 'chi', 'CARHR209010' => 'chi', 'CARHR229680' => 'chi', 'CARHR249490' => 'chi', 'Carub.0003s0844' => 'cru', 'Carub.0005s2755' => 'cru', 'Carub.0006s0322' => 'cru', 'Carub.0006s3586' => 'cru', 'Carub.0007s1855' => 'cru', 'Ca_07808_v3' => 'car', 'Ca_09535_v3' => 'car', 'Ca_10548_v3' => 'car', 'Ca_19913_v3' => 'car', 'Ca_19916_v3' => 'car', 'Ca_19975_v3' => 'car', 'CBR_g22876' => 'cbr', 'CBR_g22879' => 'cbr', 'CBR_g38491' => 'cbr', 'CBR_g54185' => 'cbr', 'CBR_g54190' => 'cbr', 'Cc02_g11020' => 'ccan', 'Cc02_g23920' => 'ccan', 'Cc02_g39860' => 'ccan', 'Cc02_g39870' => 'ccan', 'Cc03_g06760' => 'ccan', 'Cc06_g02450' => 'ccan', 'Cc09_g09450' => 'ccan', 'CDE02G1959' => 'cde', 'CDE04G0600' => 'cde', 'CDE07G1996' => 'cde', 'CDE07G2078' => 'cde', 'CDE11G0611' => 'cde', 'Cfa001683' => 'cfa', 'Cfa001734' => 'cfa', 'Cfa001737' => 'cfa', 'Cfa003751' => 'cfa', 'Cfa012019' => 'cfa', 'Cfa017353' => 'cfa', 'Cfa017732' => 'cfa', 'Cfa022464' => 'cfa', 'Ciclev10012400m.g' => 'ccl', 'Ciclev10021242m.g' => 'ccl', 'Ciclev10021302m.g' => 'ccl', 'Ciclev10021463m.g' => 'ccl', 'Ciclev10032359m.g' => 'ccl', 'CiPaw.01G081000' => 'cil', 'CiPaw.01G262500' => 'cil', 'CiPaw.01G269800' => 'cil', 'CiPaw.02G168400' => 'cil', 'CiPaw.05G119500' => 'cil', 'CiPaw.11G147300' => 'cil', 'ClCG01G003630' => 'cla', 'ClCG05G000510' => 'cla', 'ClCG05G002300' => 'cla', 'ClCG08G007650' => 'cla', 'ClCG10G021250' => 'cla', 'COL.COLO4_06218' => 'col', 'COL.COLO4_12538' => 'col', 'COL.COLO4_14775' => 'col', 'COL.COLO4_23875' => 'col', 'Cpa.g.sc141.16' => 'cpa', 'Cpa.g.sc169.16' => 'cpa', 'Cpa.g.sc244.4' => 'cpa', 'Cpa.g.sc244.5' => 'cpa', 'Cpa.g.sc29.87' => 'cpa', 'Cpa.g.sc53.115' => 'cpa', 'Cre03.g207502' => 'cre', 'Cre06.g277000' => 'cre', 'Cre09.g394050' => 'cre', 'CsaV3_3G007680' => 'csa', 'CsaV3_3G009710' => 'csa', 'CsaV3_3G034790' => 'csa', 'CsaV3_5G003750' => 'csa', 'CsaV3_6G036620' => 'csa', 'CSS0002288' => 'camsi', 'CSS0011250' => 'camsi', 'CSS0021619' => 'camsi', 'CSS0046701' => 'camsi', 'DCAR_006420' => 'dca', 'DCAR_006865' => 'dca', 'DCAR_008558' => 'dca', 'DCAR_028754' => 'dca', 'DCAR_028755' => 'dca', 'Dinv31218' => 'din', 'Dinv32371' => 'din', 'Dinv34250' => 'din', 'Dinv37156' => 'din', 'Dinv43704' => 'din', 'Duzib093G1811' => 'dzi', 'Duzib106G1622' => 'dzi', 'Duzib114G0504' => 'dzi', 'Duzib128G0338' => 'dzi', 'Duzib128G1577' => 'dzi', 'Duzib133G0104' => 'dzi', 'Duzib133G1080' => 'dzi', 'Duzib138G0324' => 'dzi', 'Duzib138G0394' => 'dzi', 'Duzib205G0122' => 'dzi', 'Duzib268G1020' => 'dzi', 'Duzib268G1359' => 'dzi', 'ECA232G3929' => 'eca', 'ECA236G2210' => 'eca', 'ECA236G2287' => 'eca', 'ECA240G4568' => 'eca', 'ECA247G0894' => 'eca', 'EL10Ac1g00200' => 'bvu', 'EL10Ac1g00886' => 'bvu', 'EL10As1g23091' => 'bvu', 'EL10As1g23092' => 'bvu', 'Eucgr.A01284' => 'egr', 'Eucgr.A01285' => 'egr', 'Eucgr.D02456' => 'egr', 'Eucgr.E00018' => 'egr', 'Eucgr.E01439' => 'egr', 'Eucgr.G02859' => 'egr', 'FAN01G0168' => 'fan', 'FAN01G0453' => 'fan', 'FAN01G2761' => 'fan', 'FAN02G1239' => 'fan', 'FAN03G0645' => 'fan', 'FAN03G2707' => 'fan', 'FAN03G2978' => 'fan', 'FAN04G0227' => 'fan', 'FAN06G0091' => 'fan', 'FAN06G1418' => 'fan', 'FAN06G1512' => 'fan', 'FAN06G1986' => 'fan', 'FAN06G2905' => 'fan', 'FAN06G4325' => 'fan', 'FAN08G0033' => 'fan', 'FAN09G0642' => 'fan', 'FAN10G1763' => 'fan', 'FAN10G2026' => 'fan', 'FAN10G2513' => 'fan', 'FAN10G3402' => 'fan', 'FAN10G3564' => 'fan', 'FAN10G3987' => 'fan', 'FAN13G1490' => 'fan', 'FAN14G5857' => 'fan', 'FAN18G1188' => 'fan', 'FvH4_5g00750' => 'fve', 'FvH4_6g13410' => 'fve', 'FvH4_7g11740' => 'fve', 'FvH4_7g17410' => 'fve', 'FvH4_7g18860' => 'fve', 'Glyma.01G099100' => 'gma', 'Glyma.01G142300' => 'gma', 'Glyma.03G025500' => 'gma', 'Glyma.03G069700' => 'gma', 'Glyma.03G260000' => 'gma', 'Glyma.09G269800' => 'gma', 'Glyma.10G208700' => 'gma', 'Glyma.18G220400' => 'gma', 'Glyma.20G182000' => 'gma', 'Gohir.A01G221726' => 'ghi', 'Gohir.A07G134600' => 'ghi', 'Gohir.A07G146000' => 'ghi', 'Gohir.A08G173900' => 'ghi', 'Gohir.A09G194900' => 'ghi', 'Gohir.A10G204100' => 'ghi', 'Gohir.A11G080600' => 'ghi', 'Gohir.A11G327500' => 'ghi', 'Gohir.A12G101800' => 'ghi', 'Gohir.D01G211200' => 'ghi', 'Gohir.D07G139200' => 'ghi', 'Gohir.D07G152100' => 'ghi', 'Gohir.D08G192600' => 'ghi', 'Gohir.D09G189200' => 'ghi', 'Gohir.D10G212000' => 'ghi', 'Gohir.D11G085200' => 'ghi', 'Gohir.D11G346400' => 'ghi', 'Gohir.D12G104800' => 'ghi', 'Gorai.001G151300' => 'gra', 'Gorai.001G174100' => 'gra', 'Gorai.002G257000' => 'gra', 'Gorai.004G202600' => 'gra', 'Gorai.007G090900' => 'gra', 'Gorai.007G376700' => 'gra', 'Gorai.008G114100' => 'gra', 'Gorai.011G237900' => 'gra', 'GSVIVG01005450001' => 'vvi', 'GSVIVG01016232001' => 'vvi', 'GSVIVG01026157001' => 'vvi', 'GSVIVG01027419001' => 'vvi', 'GSVIVG01027631001' => 'vvi', 'GSVIVG01034143001' => 'vvi', 'HanXRQChr03g0093921' => 'han', 'HanXRQChr04g0120001' => 'han', 'HanXRQChr04g0122561' => 'han', 'HanXRQChr09g0246851' => 'han', 'HanXRQChr10g0293311' => 'han', 'HanXRQChr13g0425231' => 'han', 'HanXRQChr16g0532571' => 'han', 'Haze_09050' => 'cav', 'Haze_15715' => 'cav', 'Haze_15716' => 'cav', 'Haze_16803' => 'cav', 'Haze_16850' => 'cav', 'Hma1.2p1_0301F.1_g118655' => 'hma', 'Hma1.2p1_0309F.1_g120590' => 'hma', 'Hma1.2p1_0936F.1_g238900' => 'hma', 'Hma1.2p1_3552F.1_g336740' => 'hma', 'HPP92_003520' => 'vpl', 'HPP92_006628' => 'vpl', 'HPP92_006645' => 'vpl', 'HPP92_014669' => 'vpl', 'HPP92_015077' => 'vpl', 'Hund16742' => 'sun', 'Hund17022' => 'sun', 'Lalb_Chr02g0152131' => 'lal', 'Lalb_Chr05g0225371' => 'lal', 'Lalb_Chr07g0189841' => 'lal', 'Lalb_Chr07g0192961' => 'lal', 'Lalb_Chr12g0208221' => 'lal', 'Lalb_Chr13g0291211' => 'lal', 'Lalb_Chr13g0291781' => 'lal', 'Lalb_Chr18g0044651' => 'lal', 'Lalb_Chr21g0313731' => 'lal', 'Lj1g0022533' => 'lja', 'Lj2A18T50' => 'lonja', 'Lj2A92G93' => 'lonja', 'Lj3A965T73' => 'lonja', 'Lj3g0000673' => 'lja', 'Lj3g0002666' => 'lja', 'Lj4g0016985' => 'lja', 'Lj5g0003625' => 'lja', 'Lj7A529G36' => 'lonja', 'Lj9A569T49' => 'lonja', 'Lj9A604T63' => 'lonja', 'Lsat_1_v5_gn_3_132060' => 'lsa', 'Lsat_1_v5_gn_4_68941' => 'lsa', 'Lsat_1_v5_gn_5_95580' => 'lsa', 'Lsat_1_v5_gn_7_161' => 'lsa', 'Lsat_1_v5_gn_7_7041' => 'lsa', 'Lsat_1_v5_gn_9_33481' => 'lsa', 'Lsat_1_v5_gn_9_68260' => 'lsa', 'Manes.01G073100' => 'mes', 'Manes.01G266300' => 'mes', 'Manes.02G033300' => 'mes', 'Manes.05G017900' => 'mes', 'Manes.05G046100' => 'mes', 'Manes.08G080900' => 'mes', 'Manes.10G049400' => 'mes', 'Mapoly0009s0186' => 'mpo', 'Mapoly0036s0118' => 'mpo', 'Mapoly0101s0046' => 'mpo', 'MBI04_g30218_MAGBIO' => 'mbi', 'MBI04_g35564_MAGBIO' => 'mbi', 'MBI12_g34011_MAGBIO' => 'mbi', 'MBI14_g04655_MAGBIO' => 'mbi', 'MCO07G653' => 'mco', 'MCO10G173' => 'mco', 'MD01G1087100' => 'mdo', 'MD01G1104200' => 'mdo', 'MD02G1205100' => 'mdo', 'MD04G1079200' => 'mdo', 'MD04G1131400' => 'mdo', 'MD07G1121600' => 'mdo', 'MD07G1157300' => 'mdo', 'MD07G1171000' => 'mdo', 'MD12G1144500' => 'mdo', 'Medtr1g094610' => 'mtr', 'Medtr4g021795' => 'mtr', 'Medtr4g023760' => 'mtr', 'Medtr7g118050' => 'mtr', 'MELO3C005582.2' => 'cme', 'MELO3C005989.2' => 'cme', 'MELO3C006192.2' => 'cme', 'MELO3C009248.2' => 'cme', 'MELO3C019817.2' => 'cme', 'Migut.B01625' => 'egut', 'Migut.B01915' => 'egut', 'Migut.F01721' => 'egut', 'Migut.J00314' => 'egut', 'MSTRG.20742' => 'ama', 'MSTRG.8134' => 'ama', 'Nitab4.5_0000096g0010' => 'nta', 'Nitab4.5_0000202g0030' => 'nta', 'Nitab4.5_0000216g0370' => 'nta', 'Nitab4.5_0000457g0230' => 'nta', 'Nitab4.5_0001702g0170' => 'nta', 'Nitab4.5_0003607g0010' => 'nta', 'Nitab4.5_0004917g0020' => 'nta', 'Nitab4.5_0007059g0010' => 'nta', 'Nitab4.5_0007184g0010' => 'nta', 'Nitab4.5_0007346g0020' => 'nta', 'Nn1g00410' => 'nnu', 'Nn1g01252' => 'nnu', 'Nn2g11168' => 'nnu', 'Nn2g13403' => 'nnu', 'Nn2g13760' => 'nnu', 'Nn4g26380' => 'nnu', 'Oeu000806.2' => 'oeu', 'Oeu005788.1' => 'oeu', 'Oeu006900.3' => 'oeu', 'Oeu007797.1' => 'oeu', 'Oeu011932.1' => 'oeu', 'Oeu022739.1' => 'oeu', 'Oeu037918.1' => 'oeu', 'Oeu055490.2' => 'oeu', 'Os01g0844400' => 'osa', 'Os02g0819100' => 'osa', 'Os03g0804300' => 'osa', 'Os05g0458000' => 'osa', 'Os07g0467800' => 'osa', 'Os12g0602200' => 'osa', 'Peaxi162Scf00013g03444' => 'pax', 'Peaxi162Scf00094g01120' => 'pax', 'Peaxi162Scf00191g01211' => 'pax', 'Peaxi162Scf00238g01110' => 'pax', 'Peaxi162Scf00330g00719' => 'pax', 'Peaxi162Scf00627g00018' => 'pax', 'PGR031G2686' => 'pgr', 'PGR042G0809' => 'pgr', 'PGR142G0193' => 'pgr', 'PGSC0003DMG400011066' => 'stu', 'PGSC0003DMG400012041' => 'stu', 'PGSC0003DMG400013678' => 'stu', 'PGSC0003DMG400023477' => 'stu', 'PGSC0003DMG400025956' => 'stu', 'PGSC0003DMG401019151' => 'stu', 'Phvul.006G116400' => 'pvu', 'Phvul.007G097300' => 'pvu', 'Phvul.010G015000' => 'pvu', 'Phvul.010G083900' => 'pvu', 'Potri.001G117100' => 'ptr', 'Potri.002G147300' => 'ptr', 'Potri.003G115600' => 'ptr', 'Potri.006G087400' => 'ptr', 'Potri.010G226100' => 'ptr', 'Potri.014G069200' => 'ptr', 'Potri.014G104000' => 'ptr', 'Potri.016G100200' => 'ptr', 'Pp3c10_20450' => 'ppa', 'Pp3c1_42400' => 'ppa', 'Pp3c3_24390' => 'ppa', 'Pp3c3_2860' => 'ppa', 'PRCOL_00003193' => 'pco', 'Prupe.2G144500' => 'ppe', 'Prupe.2G195700' => 'ppe', 'Prupe.2G209800' => 'ppe', 'Prupe.5G080000' => 'ppe', 'Prupe.6G257900' => 'ppe', 'Psat3g001160' => 'psa', 'Psat6g181880' => 'psa', 'Psat7g233720' => 'psa', 'PSO063G7587' => 'pso', 'PSO339G2145' => 'pso', 'PSO339G3369' => 'pso', 'PSO478G2747' => 'pso', 'PSO513G0140' => 'pso', 'PSO782G1614' => 'pso', 'PSO782G4889' => 'pso', 'PSO782G5485' => 'pso', 'PSO801G0241' => 'pso', 'QL07p048854' => 'qlo', 'QL08p046745' => 'qlo', 'QL08p052606' => 'qlo', 'QL08p053414' => 'qlo', 'QL08p054868' => 'qlo', 'RcHm_v2.0_Chr1g0350251' => 'rch', 'RcHm_v2.0_Chr1g0360851' => 'rch', 'RcHm_v2.0_Chr1g0362791' => 'rch', 'RcHm_v2.0_Chr3g0466281' => 'rch', 'RcHm_v2.0_Chr7g0201481' => 'rch', 'Rhsim01G0148600' => 'rsi', 'Rhsim05G0194400' => 'rsi', 'Rhsim07G0000700' => 'rsi', 'Rhsim07G0000800' => 'rsi', 'Rhsim07G0027900' => 'rsi', 'Rhsim09G0149500' => 'rsi', 'RhsimUnG0186900' => 'rsi', 'Sabra01G0089900' => 'sbr', 'Sabra02G0114700' => 'sbr', 'Sabra02G0116300' => 'sbr', 'Sabra03G0080100' => 'sbr', 'Sabra08G0024300' => 'sbr', 'Sabra10G0174300' => 'sbr', 'Sabra14G0048900' => 'sbr', 'Sabra14G0076500' => 'sbr', 'SalBow5G2513' => 'sbo', 'Sc01g0002300' => 'sci', 'Sc01g0004450' => 'sci', 'Sc06g0001680' => 'sci', 'Sc23g0003580' => 'sci', 'Sed0000913' => 'sed', 'Sed0001655' => 'sed', 'Sed0007745' => 'sed', 'Sed0010951' => 'sed', 'Sed0017599' => 'sed', 'Sed0021405' => 'sed', 'Sed0022810' => 'sed', 'SEGI_07099' => 'sgi', 'SEGI_11931' => 'sgi', 'SEGI_13187' => 'sgi', 'SEGI_29958' => 'sgi', 'SEGI_36351' => 'sgi', 'SGA_v2.0_scaffold126G33770' => 'sas', 'SGA_v2.0_scaffold153G37003' => 'sas', 'SGA_v2.0_scaffold2G01359' => 'sas', 'SGA_v2.0_scaffold5G03064' => 'sas', 'SGA_v2.0_scaffold95G28903' => 'sas', 'SHI12701' => 'shi', 'SHI26410' => 'shi', 'SHI38997' => 'shi', 'SHI53759' => 'shi', 'SHI53886' => 'shi', 'SHI54714' => 'shi', 'SMO011G0041' => 'smo', 'SMO146G0251' => 'smo', 'SMO160G0004' => 'smo', 'SMO174G0057' => 'smo', 'SMO244G0089' => 'smo', 'SMO296G0011' => 'smo', 'Solyc01g091280.3' => 'sly', 'Solyc05g047610.3' => 'sly', 'Solyc05g047640.3' => 'sly', 'Solyc05g055630.3' => 'sly', 'Solyc10g018160.2' => 'sly', 'Solyc10g084820.2' => 'sly', 'Solyc10g086565.2' => 'sly', 'Sopen01g037030' => 'spe', 'Sopen05g027920' => 'spe', 'Sopen05g034070' => 'spe', 'Sopen10g007260' => 'spe', 'Sopen10g034260' => 'spe', 'Sopen10g035950' => 'spe', 'Sp3g07710' => 'spa', 'Sp4g27420' => 'spa', 'Sp5g02450' => 'spa', 'Sp6g01280' => 'spa', 'Sp6g38480' => 'spa', 'Sp7g20780' => 'spa', 'TAR374G1413' => 'tar', 'TAR623G1777' => 'tar', 'TAR629G2370' => 'tar', 'TAR633G1759' => 'tar', 'TAR636G3387' => 'tar', 'THA.LOC104802447' => 'tha', 'THA.LOC104813916' => 'tha', 'THA.LOC104816423' => 'tha', 'THA.LOC104817246' => 'tha', 'THA.LOC104825895' => 'tha', 'Thecc.01G335200' => 'tca', 'Thecc.01G377400' => 'tca', 'Thecc.03G262200' => 'tca', 'Thecc.05G036800' => 'tca', 'Thecc.10G080500' => 'tca', 'Thecc.10G080800' => 'tca', 'Thhalv10001560m.g' => 'esa', 'Thhalv10006120m.g' => 'esa', 'Thhalv10014375m.g' => 'esa', 'Thhalv10021264m.g' => 'esa', 'Thhalv10028856m.g' => 'esa', 'TPR.G1914' => 'tpr', 'TPR.G4757' => 'tpr', 'TPR.G5595' => 'tpr', 'TWI14G0952' => 'twi', 'TWI14G1307' => 'twi', 'TWI38G2143' => 'twi', 'TWI59G0826' => 'twi', 'TWI77G0527' => 'twi', 'TWI81G0150' => 'twi', 'unitig_21.g21018' => 'ugi', 'unitig_26.g9725' => 'ugi', 'unitig_744.g24653' => 'ugi', 'unitig_749.g13778' => 'ugi', 'unitig_899.g15035' => 'ugi', 'vmacro04296' => 'vma', 'vmacro04852' => 'vma', 'vmacro13404' => 'vma', 'vmacro20169' => 'vma', 'vmacro21014' => 'vma', 'VMungo0331G0237' => 'vmu', 'VMungo0331G0706' => 'vmu', 'VMungo0331G1361' => 'vmu', 'VMungo0331G1489' => 'vmu', 'VMungo0540G1037' => 'vmu', 'VMungo0720G2487' => 'vmu', 'VMungo0720G2721' => 'vmu', 'Zm00001eb086860' => 'zma', 'Zm00001eb104760' => 'zma', 'Zm00001eb148220' => 'zma', 'Zm00001eb259030' => 'zma', 'Zm00001eb289590' => 'zma', 'Zm00001eb420150' => 'zma' ), 'gf_id' => 'HOM05D000968', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000968' ), 'data_identifier' => 'HOM05D000968', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000968', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p31690' => 'bna', 'A03p36040' => 'bna', 'A03p53730' => 'bna', 'A04p01410' => 'bna', 'A05p05420' => 'bna', 'A05p39630' => 'bna', 'A05p39640' => 'bna', 'A09p00970' => 'bna', 'A09p53060' => 'bna', 'A10p31890' => 'bna', 'Aa31LG10G15040' => 'aar', 'Aa31LG1G21090' => 'aar', 'Aa31LG1G26900' => 'aar', 'Aa31LG3G1820' => 'aar', 'Aa31LG5G1100' => 'aar', 'Aa31LG6G4740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2265' => 'aag', 'Actinidia07998' => 'ach', 'Actinidia11266' => 'ach', 'Actinidia12682' => 'ach', 'Actinidia26479' => 'ach', 'Actinidia31406' => 'ach', 'Actinidia32437' => 'ach', 'Actinidia38862' => 'ach', 'Ah.05g174230' => 'amhyb', 'Ah.05g179070' => 'amhyb', 'Ah.05g179090' => 'amhyb', 'Ah.12g059950' => 'amhyb', 'AL3G20480' => 'aly', 'AL4G44520' => 'aly', 'AL5G43110' => 'aly', 'AL6G13890' => 'aly', 'AL6G52620' => 'aly', 'AL7G30830' => 'aly', 'Aqoxy1G00899' => 'aox', 'Aqoxy5G04333' => 'aox', 'Aqoxy7G00641' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3IZ0NN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4EF6AW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W9P8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79GA3M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C43NQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFCU6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G95YVJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCHK29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LU1UG8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX91RN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGB4B1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8DA0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9H7JI' => 'arhy', 'AT3G09320' => 'ath', 'AT3G60800' => 'ath', 'AT4G00840' => 'ath', 'AT4G22750' => 'ath', 'AT5G04270' => 'ath', 'ATR0090G003' => 'atr', 'ATR0559G349' => 'atr', 'ATR0680G261' => 'atr', 'ATR0810G048' => 'atr', 'Atru.chr12.831' => 'acertr', 'Atru.chr5.303' => 'acertr', 'Atru.chr5.748' => 'acertr', 'Atru.chr8.1999' => 'acertr', 'Atru.chr9.1436' => 'acertr', 'AUR62004211' => 'cqu', 'AUR62004548' => 'cqu', 'AUR62013637' => 'cqu', 'AUR62022662' => 'cqu', 'AUR62025777' => 'cqu', 'AUR62042386' => 'cqu', 'BcaB01g02310' => 'bca', 'BcaB01g06062' => 'bca', 'BcaB02g08975' => 'bca', 'BcaB02g08980' => 'bca', 'BcaC01g04228' => 'bca', 'BcaC01g06830' => 'bca', 'BcaC02g10186' => 'bca', 'BcaC02g12214' => 'bca', 'BcaC04g24101' => 'bca', 'BcaC05g29520' => 'bca', 'BcaC05g29661' => 'bca', 'BcaC06g32130' => 'bca', 'BcaC06g32131' => 'bca', 'BcaC07g40601' => 'bca', 'BcaC07g42641' => 'bca', 'BcaNung01038' => 'bca', 'BcaNung01676' => 'bca', 'BcaNung02480' => 'bca', 'BcaNung07376' => 'bca', 'BolC3t16146H' => 'bol', 'BolC3t16637H' => 'bol', 'BolC4t22257H' => 'bol', 'BolC4t24728H' => 'bol', 'BolC5t34517H' => 'bol', 'BolC7t45703H' => 'bol', 'BolC8t51166H' => 'bol', 'BolC9t53038H' => 'bol', 'BolC9t60000H' => 'bol', 'BraA01t01345Z' => 'bra', 'BraA01t01346Z' => 'bra', 'BraA01t01348Z' => 'bra', 'BraA03t12347Z' => 'bra', 'BraA03t12775Z' => 'bra', 'BraA03t14439Z' => 'bra', 'BraA04t15860Z' => 'bra', 'BraA05t19511Z' => 'bra', 'BraA05t22746Z' => 'bra', 'BraA09t35767Z' => 'bra', 'BraA09t40732Z' => 'bra', 'BraA10t45233Z' => 'bra', 'C03p38720' => 'bna', 'C03p43680' => 'bna', 'C04p06350' => 'bna', 'C04p31800' => 'bna', 'C05p58680' => 'bna', 'C07p52110' => 'bna', 'C08p35760' => 'bna', 'C09p01050' => 'bna', 'C09p72600' => 'bna', 'CAN.G106.2' => 'can', 'CAN.G1482.1' => 'can', 'CAN.G324.12' => 'can', 'CAN.G388.20' => 'can', 'CAN.G412.7' => 'can', 'CAN.G694.32' => 'can', 'CAN.G92.12' => 'can', 'CANSAT11G2353' => 'cansat', 'CANSAT21G1398' => 'cansat', 'CANSAT56G2456' => 'cansat', 'CANSAT56G3031' => 'cansat', 'CANSAT56G4539' => 'cansat', 'CARHR083680' => 'chi', 'CARHR171190' => 'chi', 'CARHR209010' => 'chi', 'CARHR229680' => 'chi', 'CARHR249490' => 'chi', 'Carub.0003s0844' => 'cru', 'Carub.0005s2755' => 'cru', 'Carub.0006s0322' => 'cru', 'Carub.0006s3586' => 'cru', 'Carub.0007s1855' => 'cru', 'Ca_07808_v3' => 'car', 'Ca_09535_v3' => 'car', 'Ca_10548_v3' => 'car', 'Ca_19913_v3' => 'car', 'Ca_19916_v3' => 'car', 'Ca_19975_v3' => 'car', 'CBR_g22876' => 'cbr', 'CBR_g22879' => 'cbr', 'CBR_g38491' => 'cbr', 'CBR_g54185' => 'cbr', 'CBR_g54190' => 'cbr', 'Cc02_g11020' => 'ccan', 'Cc02_g23920' => 'ccan', 'Cc02_g39860' => 'ccan', 'Cc02_g39870' => 'ccan', 'Cc03_g06760' => 'ccan', 'Cc06_g02450' => 'ccan', 'Cc09_g09450' => 'ccan', 'CDE02G1959' => 'cde', 'CDE04G0600' => 'cde', 'CDE07G1996' => 'cde', 'CDE07G2078' => 'cde', 'CDE11G0611' => 'cde', 'Cfa001683' => 'cfa', 'Cfa001734' => 'cfa', 'Cfa001737' => 'cfa', 'Cfa003751' => 'cfa', 'Cfa012019' => 'cfa', 'Cfa017353' => 'cfa', 'Cfa017732' => 'cfa', 'Cfa022464' => 'cfa', 'Ciclev10012400m.g' => 'ccl', 'Ciclev10021242m.g' => 'ccl', 'Ciclev10021302m.g' => 'ccl', 'Ciclev10021463m.g' => 'ccl', 'Ciclev10032359m.g' => 'ccl', 'CiPaw.01G081000' => 'cil', 'CiPaw.01G262500' => 'cil', 'CiPaw.01G269800' => 'cil', 'CiPaw.02G168400' => 'cil', 'CiPaw.05G119500' => 'cil', 'CiPaw.11G147300' => 'cil', 'ClCG01G003630' => 'cla', 'ClCG05G000510' => 'cla', 'ClCG05G002300' => 'cla', 'ClCG08G007650' => 'cla', 'ClCG10G021250' => 'cla', 'COL.COLO4_06218' => 'col', 'COL.COLO4_12538' => 'col', 'COL.COLO4_14775' => 'col', 'COL.COLO4_23875' => 'col', 'Cpa.g.sc141.16' => 'cpa', 'Cpa.g.sc169.16' => 'cpa', 'Cpa.g.sc244.4' => 'cpa', 'Cpa.g.sc244.5' => 'cpa', 'Cpa.g.sc29.87' => 'cpa', 'Cpa.g.sc53.115' => 'cpa', 'Cre03.g207502' => 'cre', 'Cre06.g277000' => 'cre', 'Cre09.g394050' => 'cre', 'CsaV3_3G007680' => 'csa', 'CsaV3_3G009710' => 'csa', 'CsaV3_3G034790' => 'csa', 'CsaV3_5G003750' => 'csa', 'CsaV3_6G036620' => 'csa', 'CSS0002288' => 'camsi', 'CSS0011250' => 'camsi', 'CSS0021619' => 'camsi', 'CSS0046701' => 'camsi', 'DCAR_006420' => 'dca', 'DCAR_006865' => 'dca', 'DCAR_008558' => 'dca', 'DCAR_028754' => 'dca', 'DCAR_028755' => 'dca', 'Dinv31218' => 'din', 'Dinv32371' => 'din', 'Dinv34250' => 'din', 'Dinv37156' => 'din', 'Dinv43704' => 'din', 'Duzib093G1811' => 'dzi', 'Duzib106G1622' => 'dzi', 'Duzib114G0504' => 'dzi', 'Duzib128G0338' => 'dzi', 'Duzib128G1577' => 'dzi', 'Duzib133G0104' => 'dzi', 'Duzib133G1080' => 'dzi', 'Duzib138G0324' => 'dzi', 'Duzib138G0394' => 'dzi', 'Duzib205G0122' => 'dzi', 'Duzib268G1020' => 'dzi', 'Duzib268G1359' => 'dzi', 'ECA232G3929' => 'eca', 'ECA236G2210' => 'eca', 'ECA236G2287' => 'eca', 'ECA240G4568' => 'eca', 'ECA247G0894' => 'eca', 'EL10Ac1g00200' => 'bvu', 'EL10Ac1g00886' => 'bvu', 'EL10As1g23091' => 'bvu', 'EL10As1g23092' => 'bvu', 'Eucgr.A01284' => 'egr', 'Eucgr.A01285' => 'egr', 'Eucgr.D02456' => 'egr', 'Eucgr.E00018' => 'egr', 'Eucgr.E01439' => 'egr', 'Eucgr.G02859' => 'egr', 'FAN01G0168' => 'fan', 'FAN01G0453' => 'fan', 'FAN01G2761' => 'fan', 'FAN02G1239' => 'fan', 'FAN03G0645' => 'fan', 'FAN03G2707' => 'fan', 'FAN03G2978' => 'fan', 'FAN04G0227' => 'fan', 'FAN06G0091' => 'fan', 'FAN06G1418' => 'fan', 'FAN06G1512' => 'fan', 'FAN06G1986' => 'fan', 'FAN06G2905' => 'fan', 'FAN06G4325' => 'fan', 'FAN08G0033' => 'fan', 'FAN09G0642' => 'fan', 'FAN10G1763' => 'fan', 'FAN10G2026' => 'fan', 'FAN10G2513' => 'fan', 'FAN10G3402' => 'fan', 'FAN10G3564' => 'fan', 'FAN10G3987' => 'fan', 'FAN13G1490' => 'fan', 'FAN14G5857' => 'fan', 'FAN18G1188' => 'fan', 'FvH4_5g00750' => 'fve', 'FvH4_6g13410' => 'fve', 'FvH4_7g11740' => 'fve', 'FvH4_7g17410' => 'fve', 'FvH4_7g18860' => 'fve', 'Glyma.01G099100' => 'gma', 'Glyma.01G142300' => 'gma', 'Glyma.03G025500' => 'gma', 'Glyma.03G069700' => 'gma', 'Glyma.03G260000' => 'gma', 'Glyma.09G269800' => 'gma', 'Glyma.10G208700' => 'gma', 'Glyma.18G220400' => 'gma', 'Glyma.20G182000' => 'gma', 'Gohir.A01G221726' => 'ghi', 'Gohir.A07G134600' => 'ghi', 'Gohir.A07G146000' => 'ghi', 'Gohir.A08G173900' => 'ghi', 'Gohir.A09G194900' => 'ghi', 'Gohir.A10G204100' => 'ghi', 'Gohir.A11G080600' => 'ghi', 'Gohir.A11G327500' => 'ghi', 'Gohir.A12G101800' => 'ghi', 'Gohir.D01G211200' => 'ghi', 'Gohir.D07G139200' => 'ghi', 'Gohir.D07G152100' => 'ghi', 'Gohir.D08G192600' => 'ghi', 'Gohir.D09G189200' => 'ghi', 'Gohir.D10G212000' => 'ghi', 'Gohir.D11G085200' => 'ghi', 'Gohir.D11G346400' => 'ghi', 'Gohir.D12G104800' => 'ghi', 'Gorai.001G151300' => 'gra', 'Gorai.001G174100' => 'gra', 'Gorai.002G257000' => 'gra', 'Gorai.004G202600' => 'gra', 'Gorai.007G090900' => 'gra', 'Gorai.007G376700' => 'gra', 'Gorai.008G114100' => 'gra', 'Gorai.011G237900' => 'gra', 'GSVIVG01005450001' => 'vvi', 'GSVIVG01016232001' => 'vvi', 'GSVIVG01026157001' => 'vvi', 'GSVIVG01027419001' => 'vvi', 'GSVIVG01027631001' => 'vvi', 'GSVIVG01034143001' => 'vvi', 'HanXRQChr03g0093921' => 'han', 'HanXRQChr04g0120001' => 'han', 'HanXRQChr04g0122561' => 'han', 'HanXRQChr09g0246851' => 'han', 'HanXRQChr10g0293311' => 'han', 'HanXRQChr13g0425231' => 'han', 'HanXRQChr16g0532571' => 'han', 'Haze_09050' => 'cav', 'Haze_15715' => 'cav', 'Haze_15716' => 'cav', 'Haze_16803' => 'cav', 'Haze_16850' => 'cav', 'Hma1.2p1_0301F.1_g118655' => 'hma', 'Hma1.2p1_0309F.1_g120590' => 'hma', 'Hma1.2p1_0936F.1_g238900' => 'hma', 'Hma1.2p1_3552F.1_g336740' => 'hma', 'HPP92_003520' => 'vpl', 'HPP92_006628' => 'vpl', 'HPP92_006645' => 'vpl', 'HPP92_014669' => 'vpl', 'HPP92_015077' => 'vpl', 'Hund16742' => 'sun', 'Hund17022' => 'sun', 'Lalb_Chr02g0152131' => 'lal', 'Lalb_Chr05g0225371' => 'lal', 'Lalb_Chr07g0189841' => 'lal', 'Lalb_Chr07g0192961' => 'lal', 'Lalb_Chr12g0208221' => 'lal', 'Lalb_Chr13g0291211' => 'lal', 'Lalb_Chr13g0291781' => 'lal', 'Lalb_Chr18g0044651' => 'lal', 'Lalb_Chr21g0313731' => 'lal', 'Lj1g0022533' => 'lja', 'Lj2A18T50' => 'lonja', 'Lj2A92G93' => 'lonja', 'Lj3A965T73' => 'lonja', 'Lj3g0000673' => 'lja', 'Lj3g0002666' => 'lja', 'Lj4g0016985' => 'lja', 'Lj5g0003625' => 'lja', 'Lj7A529G36' => 'lonja', 'Lj9A569T49' => 'lonja', 'Lj9A604T63' => 'lonja', 'Lsat_1_v5_gn_3_132060' => 'lsa', 'Lsat_1_v5_gn_4_68941' => 'lsa', 'Lsat_1_v5_gn_5_95580' => 'lsa', 'Lsat_1_v5_gn_7_161' => 'lsa', 'Lsat_1_v5_gn_7_7041' => 'lsa', 'Lsat_1_v5_gn_9_33481' => 'lsa', 'Lsat_1_v5_gn_9_68260' => 'lsa', 'Manes.01G073100' => 'mes', 'Manes.01G266300' => 'mes', 'Manes.02G033300' => 'mes', 'Manes.05G017900' => 'mes', 'Manes.05G046100' => 'mes', 'Manes.08G080900' => 'mes', 'Manes.10G049400' => 'mes', 'Mapoly0009s0186' => 'mpo', 'Mapoly0036s0118' => 'mpo', 'Mapoly0101s0046' => 'mpo', 'MBI04_g30218_MAGBIO' => 'mbi', 'MBI04_g35564_MAGBIO' => 'mbi', 'MBI12_g34011_MAGBIO' => 'mbi', 'MBI14_g04655_MAGBIO' => 'mbi', 'MCO07G653' => 'mco', 'MCO10G173' => 'mco', 'MD01G1087100' => 'mdo', 'MD01G1104200' => 'mdo', 'MD02G1205100' => 'mdo', 'MD04G1079200' => 'mdo', 'MD04G1131400' => 'mdo', 'MD07G1121600' => 'mdo', 'MD07G1157300' => 'mdo', 'MD07G1171000' => 'mdo', 'MD12G1144500' => 'mdo', 'Medtr1g094610' => 'mtr', 'Medtr4g021795' => 'mtr', 'Medtr4g023760' => 'mtr', 'Medtr7g118050' => 'mtr', 'MELO3C005582.2' => 'cme', 'MELO3C005989.2' => 'cme', 'MELO3C006192.2' => 'cme', 'MELO3C009248.2' => 'cme', 'MELO3C019817.2' => 'cme', 'Migut.B01625' => 'egut', 'Migut.B01915' => 'egut', 'Migut.F01721' => 'egut', 'Migut.J00314' => 'egut', 'MSTRG.20742' => 'ama', 'MSTRG.8134' => 'ama', 'Nitab4.5_0000096g0010' => 'nta', 'Nitab4.5_0000202g0030' => 'nta', 'Nitab4.5_0000216g0370' => 'nta', 'Nitab4.5_0000457g0230' => 'nta', 'Nitab4.5_0001702g0170' => 'nta', 'Nitab4.5_0003607g0010' => 'nta', 'Nitab4.5_0004917g0020' => 'nta', 'Nitab4.5_0007059g0010' => 'nta', 'Nitab4.5_0007184g0010' => 'nta', 'Nitab4.5_0007346g0020' => 'nta', 'Nn1g00410' => 'nnu', 'Nn1g01252' => 'nnu', 'Nn2g11168' => 'nnu', 'Nn2g13403' => 'nnu', 'Nn2g13760' => 'nnu', 'Nn4g26380' => 'nnu', 'Oeu000806.2' => 'oeu', 'Oeu005788.1' => 'oeu', 'Oeu006900.3' => 'oeu', 'Oeu007797.1' => 'oeu', 'Oeu011932.1' => 'oeu', 'Oeu022739.1' => 'oeu', 'Oeu037918.1' => 'oeu', 'Oeu055490.2' => 'oeu', 'Os01g0844400' => 'osa', 'Os02g0819100' => 'osa', 'Os03g0804300' => 'osa', 'Os05g0458000' => 'osa', 'Os07g0467800' => 'osa', 'Os12g0602200' => 'osa', 'Peaxi162Scf00013g03444' => 'pax', 'Peaxi162Scf00094g01120' => 'pax', 'Peaxi162Scf00191g01211' => 'pax', 'Peaxi162Scf00238g01110' => 'pax', 'Peaxi162Scf00330g00719' => 'pax', 'Peaxi162Scf00627g00018' => 'pax', 'PGR031G2686' => 'pgr', 'PGR042G0809' => 'pgr', 'PGR142G0193' => 'pgr', 'PGSC0003DMG400011066' => 'stu', 'PGSC0003DMG400012041' => 'stu', 'PGSC0003DMG400013678' => 'stu', 'PGSC0003DMG400023477' => 'stu', 'PGSC0003DMG400025956' => 'stu', 'PGSC0003DMG401019151' => 'stu', 'Phvul.006G116400' => 'pvu', 'Phvul.007G097300' => 'pvu', 'Phvul.010G015000' => 'pvu', 'Phvul.010G083900' => 'pvu', 'Potri.001G117100' => 'ptr', 'Potri.002G147300' => 'ptr', 'Potri.003G115600' => 'ptr', 'Potri.006G087400' => 'ptr', 'Potri.010G226100' => 'ptr', 'Potri.014G069200' => 'ptr', 'Potri.014G104000' => 'ptr', 'Potri.016G100200' => 'ptr', 'Pp3c10_20450' => 'ppa', 'Pp3c1_42400' => 'ppa', 'Pp3c3_24390' => 'ppa', 'Pp3c3_2860' => 'ppa', 'PRCOL_00003193' => 'pco', 'Prupe.2G144500' => 'ppe', 'Prupe.2G195700' => 'ppe', 'Prupe.2G209800' => 'ppe', 'Prupe.5G080000' => 'ppe', 'Prupe.6G257900' => 'ppe', 'Psat3g001160' => 'psa', 'Psat6g181880' => 'psa', 'Psat7g233720' => 'psa', 'PSO063G7587' => 'pso', 'PSO339G2145' => 'pso', 'PSO339G3369' => 'pso', 'PSO478G2747' => 'pso', 'PSO513G0140' => 'pso', 'PSO782G1614' => 'pso', 'PSO782G4889' => 'pso', 'PSO782G5485' => 'pso', 'PSO801G0241' => 'pso', 'QL07p048854' => 'qlo', 'QL08p046745' => 'qlo', 'QL08p052606' => 'qlo', 'QL08p053414' => 'qlo', 'QL08p054868' => 'qlo', 'RcHm_v2.0_Chr1g0350251' => 'rch', 'RcHm_v2.0_Chr1g0360851' => 'rch', 'RcHm_v2.0_Chr1g0362791' => 'rch', 'RcHm_v2.0_Chr3g0466281' => 'rch', 'RcHm_v2.0_Chr7g0201481' => 'rch', 'Rhsim01G0148600' => 'rsi', 'Rhsim05G0194400' => 'rsi', 'Rhsim07G0000700' => 'rsi', 'Rhsim07G0000800' => 'rsi', 'Rhsim07G0027900' => 'rsi', 'Rhsim09G0149500' => 'rsi', 'RhsimUnG0186900' => 'rsi', 'Sabra01G0089900' => 'sbr', 'Sabra02G0114700' => 'sbr', 'Sabra02G0116300' => 'sbr', 'Sabra03G0080100' => 'sbr', 'Sabra08G0024300' => 'sbr', 'Sabra10G0174300' => 'sbr', 'Sabra14G0048900' => 'sbr', 'Sabra14G0076500' => 'sbr', 'SalBow5G2513' => 'sbo', 'Sc01g0002300' => 'sci', 'Sc01g0004450' => 'sci', 'Sc06g0001680' => 'sci', 'Sc23g0003580' => 'sci', 'Sed0000913' => 'sed', 'Sed0001655' => 'sed', 'Sed0007745' => 'sed', 'Sed0010951' => 'sed', 'Sed0017599' => 'sed', 'Sed0021405' => 'sed', 'Sed0022810' => 'sed', 'SEGI_07099' => 'sgi', 'SEGI_11931' => 'sgi', 'SEGI_13187' => 'sgi', 'SEGI_29958' => 'sgi', 'SEGI_36351' => 'sgi', 'SGA_v2.0_scaffold126G33770' => 'sas', 'SGA_v2.0_scaffold153G37003' => 'sas', 'SGA_v2.0_scaffold2G01359' => 'sas', 'SGA_v2.0_scaffold5G03064' => 'sas', 'SGA_v2.0_scaffold95G28903' => 'sas', 'SHI12701' => 'shi', 'SHI26410' => 'shi', 'SHI38997' => 'shi', 'SHI53759' => 'shi', 'SHI53886' => 'shi', 'SHI54714' => 'shi', 'SMO011G0041' => 'smo', 'SMO146G0251' => 'smo', 'SMO160G0004' => 'smo', 'SMO174G0057' => 'smo', 'SMO244G0089' => 'smo', 'SMO296G0011' => 'smo', 'Solyc01g091280.3' => 'sly', 'Solyc05g047610.3' => 'sly', 'Solyc05g047640.3' => 'sly', 'Solyc05g055630.3' => 'sly', 'Solyc10g018160.2' => 'sly', 'Solyc10g084820.2' => 'sly', 'Solyc10g086565.2' => 'sly', 'Sopen01g037030' => 'spe', 'Sopen05g027920' => 'spe', 'Sopen05g034070' => 'spe', 'Sopen10g007260' => 'spe', 'Sopen10g034260' => 'spe', 'Sopen10g035950' => 'spe', 'Sp3g07710' => 'spa', 'Sp4g27420' => 'spa', 'Sp5g02450' => 'spa', 'Sp6g01280' => 'spa', 'Sp6g38480' => 'spa', 'Sp7g20780' => 'spa', 'TAR374G1413' => 'tar', 'TAR623G1777' => 'tar', 'TAR629G2370' => 'tar', 'TAR633G1759' => 'tar', 'TAR636G3387' => 'tar', 'THA.LOC104802447' => 'tha', 'THA.LOC104813916' => 'tha', 'THA.LOC104816423' => 'tha', 'THA.LOC104817246' => 'tha', 'THA.LOC104825895' => 'tha', 'Thecc.01G335200' => 'tca', 'Thecc.01G377400' => 'tca', 'Thecc.03G262200' => 'tca', 'Thecc.05G036800' => 'tca', 'Thecc.10G080500' => 'tca', 'Thecc.10G080800' => 'tca', 'Thhalv10001560m.g' => 'esa', 'Thhalv10006120m.g' => 'esa', 'Thhalv10014375m.g' => 'esa', 'Thhalv10021264m.g' => 'esa', 'Thhalv10028856m.g' => 'esa', 'TPR.G1914' => 'tpr', 'TPR.G4757' => 'tpr', 'TPR.G5595' => 'tpr', 'TWI14G0952' => 'twi', 'TWI14G1307' => 'twi', 'TWI38G2143' => 'twi', 'TWI59G0826' => 'twi', 'TWI77G0527' => 'twi', 'TWI81G0150' => 'twi', 'unitig_21.g21018' => 'ugi', 'unitig_26.g9725' => 'ugi', 'unitig_744.g24653' => 'ugi', 'unitig_749.g13778' => 'ugi', 'unitig_899.g15035' => 'ugi', 'vmacro04296' => 'vma', 'vmacro04852' => 'vma', 'vmacro13404' => 'vma', 'vmacro20169' => 'vma', 'vmacro21014' => 'vma', 'VMungo0331G0237' => 'vmu', 'VMungo0331G0706' => 'vmu', 'VMungo0331G1361' => 'vmu', 'VMungo0331G1489' => 'vmu', 'VMungo0540G1037' => 'vmu', 'VMungo0720G2487' => 'vmu', 'VMungo0720G2721' => 'vmu', 'Zm00001eb086860' => 'zma', 'Zm00001eb104760' => 'zma', 'Zm00001eb148220' => 'zma', 'Zm00001eb259030' => 'zma', 'Zm00001eb289590' => 'zma', 'Zm00001eb420150' => 'zma' ) $gf_id = 'HOM05D000968' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000968' ) $data_identifier = 'HOM05D000968' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 19, 'bol' => (int) 9, 'bra' => (int) 12, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 5, 'ccan' => (int) 7, 'cde' => (int) 5, 'cfa' => (int) 8, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 4, 'dca' => (int) 5, 'din' => (int) 5, 'dzi' => (int) 12, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 25, 'fve' => (int) 5, 'gma' => (int) 9, 'ghi' => (int) 18, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 7, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 5, 'sun' => (int) 2, 'lal' => (int) 9, 'lja' => (int) 5, 'lonja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 9, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 2, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 3, 'stu' => (int) 6, 'pvu' => (int) 4, 'ptr' => (int) 8, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 3, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 1, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 5, 'sas' => (int) 5, 'shi' => (int) 6, 'smo' => (int) 6, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 3, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420150' $species_info = array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ) $local_species = 'pso' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000968', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p31690' => 'bna', 'A03p36040' => 'bna', 'A03p53730' => 'bna', 'A04p01410' => 'bna', 'A05p05420' => 'bna', 'A05p39630' => 'bna', 'A05p39640' => 'bna', 'A09p00970' => 'bna', 'A09p53060' => 'bna', 'A10p31890' => 'bna', 'Aa31LG10G15040' => 'aar', 'Aa31LG1G21090' => 'aar', 'Aa31LG1G26900' => 'aar', 'Aa31LG3G1820' => 'aar', 'Aa31LG5G1100' => 'aar', 'Aa31LG6G4740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2265' => 'aag', 'Actinidia07998' => 'ach', 'Actinidia11266' => 'ach', 'Actinidia12682' => 'ach', 'Actinidia26479' => 'ach', 'Actinidia31406' => 'ach', 'Actinidia32437' => 'ach', 'Actinidia38862' => 'ach', 'Ah.05g174230' => 'amhyb', 'Ah.05g179070' => 'amhyb', 'Ah.05g179090' => 'amhyb', 'Ah.12g059950' => 'amhyb', 'AL3G20480' => 'aly', 'AL4G44520' => 'aly', 'AL5G43110' => 'aly', 'AL6G13890' => 'aly', 'AL6G52620' => 'aly', 'AL7G30830' => 'aly', 'Aqoxy1G00899' => 'aox', 'Aqoxy5G04333' => 'aox', 'Aqoxy7G00641' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3IZ0NN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4EF6AW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W9P8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79GA3M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C43NQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFCU6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G95YVJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCHK29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LU1UG8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX91RN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGB4B1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8DA0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9H7JI' => 'arhy', 'AT3G09320' => 'ath', 'AT3G60800' => 'ath', 'AT4G00840' => 'ath', 'AT4G22750' => 'ath', 'AT5G04270' => 'ath', 'ATR0090G003' => 'atr', 'ATR0559G349' => 'atr', 'ATR0680G261' => 'atr', 'ATR0810G048' => 'atr', 'Atru.chr12.831' => 'acertr', 'Atru.chr5.303' => 'acertr', 'Atru.chr5.748' => 'acertr', 'Atru.chr8.1999' => 'acertr', 'Atru.chr9.1436' => 'acertr', 'AUR62004211' => 'cqu', 'AUR62004548' => 'cqu', 'AUR62013637' => 'cqu', 'AUR62022662' => 'cqu', 'AUR62025777' => 'cqu', 'AUR62042386' => 'cqu', 'BcaB01g02310' => 'bca', 'BcaB01g06062' => 'bca', 'BcaB02g08975' => 'bca', 'BcaB02g08980' => 'bca', 'BcaC01g04228' => 'bca', 'BcaC01g06830' => 'bca', 'BcaC02g10186' => 'bca', 'BcaC02g12214' => 'bca', 'BcaC04g24101' => 'bca', 'BcaC05g29520' => 'bca', 'BcaC05g29661' => 'bca', 'BcaC06g32130' => 'bca', 'BcaC06g32131' => 'bca', 'BcaC07g40601' => 'bca', 'BcaC07g42641' => 'bca', 'BcaNung01038' => 'bca', 'BcaNung01676' => 'bca', 'BcaNung02480' => 'bca', 'BcaNung07376' => 'bca', 'BolC3t16146H' => 'bol', 'BolC3t16637H' => 'bol', 'BolC4t22257H' => 'bol', 'BolC4t24728H' => 'bol', 'BolC5t34517H' => 'bol', 'BolC7t45703H' => 'bol', 'BolC8t51166H' => 'bol', 'BolC9t53038H' => 'bol', 'BolC9t60000H' => 'bol', 'BraA01t01345Z' => 'bra', 'BraA01t01346Z' => 'bra', 'BraA01t01348Z' => 'bra', 'BraA03t12347Z' => 'bra', 'BraA03t12775Z' => 'bra', 'BraA03t14439Z' => 'bra', 'BraA04t15860Z' => 'bra', 'BraA05t19511Z' => 'bra', 'BraA05t22746Z' => 'bra', 'BraA09t35767Z' => 'bra', 'BraA09t40732Z' => 'bra', 'BraA10t45233Z' => 'bra', 'C03p38720' => 'bna', 'C03p43680' => 'bna', 'C04p06350' => 'bna', 'C04p31800' => 'bna', 'C05p58680' => 'bna', 'C07p52110' => 'bna', 'C08p35760' => 'bna', 'C09p01050' => 'bna', 'C09p72600' => 'bna', 'CAN.G106.2' => 'can', 'CAN.G1482.1' => 'can', 'CAN.G324.12' => 'can', 'CAN.G388.20' => 'can', 'CAN.G412.7' => 'can', 'CAN.G694.32' => 'can', 'CAN.G92.12' => 'can', 'CANSAT11G2353' => 'cansat', 'CANSAT21G1398' => 'cansat', 'CANSAT56G2456' => 'cansat', 'CANSAT56G3031' => 'cansat', 'CANSAT56G4539' => 'cansat', 'CARHR083680' => 'chi', 'CARHR171190' => 'chi', 'CARHR209010' => 'chi', 'CARHR229680' => 'chi', 'CARHR249490' => 'chi', 'Carub.0003s0844' => 'cru', 'Carub.0005s2755' => 'cru', 'Carub.0006s0322' => 'cru', 'Carub.0006s3586' => 'cru', 'Carub.0007s1855' => 'cru', 'Ca_07808_v3' => 'car', 'Ca_09535_v3' => 'car', 'Ca_10548_v3' => 'car', 'Ca_19913_v3' => 'car', 'Ca_19916_v3' => 'car', 'Ca_19975_v3' => 'car', 'CBR_g22876' => 'cbr', 'CBR_g22879' => 'cbr', 'CBR_g38491' => 'cbr', 'CBR_g54185' => 'cbr', 'CBR_g54190' => 'cbr', 'Cc02_g11020' => 'ccan', 'Cc02_g23920' => 'ccan', 'Cc02_g39860' => 'ccan', 'Cc02_g39870' => 'ccan', 'Cc03_g06760' => 'ccan', 'Cc06_g02450' => 'ccan', 'Cc09_g09450' => 'ccan', 'CDE02G1959' => 'cde', 'CDE04G0600' => 'cde', 'CDE07G1996' => 'cde', 'CDE07G2078' => 'cde', 'CDE11G0611' => 'cde', 'Cfa001683' => 'cfa', 'Cfa001734' => 'cfa', 'Cfa001737' => 'cfa', 'Cfa003751' => 'cfa', 'Cfa012019' => 'cfa', 'Cfa017353' => 'cfa', 'Cfa017732' => 'cfa', 'Cfa022464' => 'cfa', 'Ciclev10012400m.g' => 'ccl', 'Ciclev10021242m.g' => 'ccl', 'Ciclev10021302m.g' => 'ccl', 'Ciclev10021463m.g' => 'ccl', 'Ciclev10032359m.g' => 'ccl', 'CiPaw.01G081000' => 'cil', 'CiPaw.01G262500' => 'cil', 'CiPaw.01G269800' => 'cil', 'CiPaw.02G168400' => 'cil', 'CiPaw.05G119500' => 'cil', 'CiPaw.11G147300' => 'cil', 'ClCG01G003630' => 'cla', 'ClCG05G000510' => 'cla', 'ClCG05G002300' => 'cla', 'ClCG08G007650' => 'cla', 'ClCG10G021250' => 'cla', 'COL.COLO4_06218' => 'col', 'COL.COLO4_12538' => 'col', 'COL.COLO4_14775' => 'col', 'COL.COLO4_23875' => 'col', 'Cpa.g.sc141.16' => 'cpa', 'Cpa.g.sc169.16' => 'cpa', 'Cpa.g.sc244.4' => 'cpa', 'Cpa.g.sc244.5' => 'cpa', 'Cpa.g.sc29.87' => 'cpa', 'Cpa.g.sc53.115' => 'cpa', 'Cre03.g207502' => 'cre', 'Cre06.g277000' => 'cre', 'Cre09.g394050' => 'cre', 'CsaV3_3G007680' => 'csa', 'CsaV3_3G009710' => 'csa', 'CsaV3_3G034790' => 'csa', 'CsaV3_5G003750' => 'csa', 'CsaV3_6G036620' => 'csa', 'CSS0002288' => 'camsi', 'CSS0011250' => 'camsi', 'CSS0021619' => 'camsi', 'CSS0046701' => 'camsi', 'DCAR_006420' => 'dca', 'DCAR_006865' => 'dca', 'DCAR_008558' => 'dca', 'DCAR_028754' => 'dca', 'DCAR_028755' => 'dca', 'Dinv31218' => 'din', 'Dinv32371' => 'din', 'Dinv34250' => 'din', 'Dinv37156' => 'din', 'Dinv43704' => 'din', 'Duzib093G1811' => 'dzi', 'Duzib106G1622' => 'dzi', 'Duzib114G0504' => 'dzi', 'Duzib128G0338' => 'dzi', 'Duzib128G1577' => 'dzi', 'Duzib133G0104' => 'dzi', 'Duzib133G1080' => 'dzi', 'Duzib138G0324' => 'dzi', 'Duzib138G0394' => 'dzi', 'Duzib205G0122' => 'dzi', 'Duzib268G1020' => 'dzi', 'Duzib268G1359' => 'dzi', 'ECA232G3929' => 'eca', 'ECA236G2210' => 'eca', 'ECA236G2287' => 'eca', 'ECA240G4568' => 'eca', 'ECA247G0894' => 'eca', 'EL10Ac1g00200' => 'bvu', 'EL10Ac1g00886' => 'bvu', 'EL10As1g23091' => 'bvu', 'EL10As1g23092' => 'bvu', 'Eucgr.A01284' => 'egr', 'Eucgr.A01285' => 'egr', 'Eucgr.D02456' => 'egr', 'Eucgr.E00018' => 'egr', 'Eucgr.E01439' => 'egr', 'Eucgr.G02859' => 'egr', 'FAN01G0168' => 'fan', 'FAN01G0453' => 'fan', 'FAN01G2761' => 'fan', 'FAN02G1239' => 'fan', 'FAN03G0645' => 'fan', 'FAN03G2707' => 'fan', 'FAN03G2978' => 'fan', 'FAN04G0227' => 'fan', 'FAN06G0091' => 'fan', 'FAN06G1418' => 'fan', 'FAN06G1512' => 'fan', 'FAN06G1986' => 'fan', 'FAN06G2905' => 'fan', 'FAN06G4325' => 'fan', 'FAN08G0033' => 'fan', 'FAN09G0642' => 'fan', 'FAN10G1763' => 'fan', 'FAN10G2026' => 'fan', 'FAN10G2513' => 'fan', 'FAN10G3402' => 'fan', 'FAN10G3564' => 'fan', 'FAN10G3987' => 'fan', 'FAN13G1490' => 'fan', 'FAN14G5857' => 'fan', 'FAN18G1188' => 'fan', 'FvH4_5g00750' => 'fve', 'FvH4_6g13410' => 'fve', 'FvH4_7g11740' => 'fve', 'FvH4_7g17410' => 'fve', 'FvH4_7g18860' => 'fve', 'Glyma.01G099100' => 'gma', 'Glyma.01G142300' => 'gma', 'Glyma.03G025500' => 'gma', 'Glyma.03G069700' => 'gma', 'Glyma.03G260000' => 'gma', 'Glyma.09G269800' => 'gma', 'Glyma.10G208700' => 'gma', 'Glyma.18G220400' => 'gma', 'Glyma.20G182000' => 'gma', 'Gohir.A01G221726' => 'ghi', 'Gohir.A07G134600' => 'ghi', 'Gohir.A07G146000' => 'ghi', 'Gohir.A08G173900' => 'ghi', 'Gohir.A09G194900' => 'ghi', 'Gohir.A10G204100' => 'ghi', 'Gohir.A11G080600' => 'ghi', 'Gohir.A11G327500' => 'ghi', 'Gohir.A12G101800' => 'ghi', 'Gohir.D01G211200' => 'ghi', 'Gohir.D07G139200' => 'ghi', 'Gohir.D07G152100' => 'ghi', 'Gohir.D08G192600' => 'ghi', 'Gohir.D09G189200' => 'ghi', 'Gohir.D10G212000' => 'ghi', 'Gohir.D11G085200' => 'ghi', 'Gohir.D11G346400' => 'ghi', 'Gohir.D12G104800' => 'ghi', 'Gorai.001G151300' => 'gra', 'Gorai.001G174100' => 'gra', 'Gorai.002G257000' => 'gra', 'Gorai.004G202600' => 'gra', 'Gorai.007G090900' => 'gra', 'Gorai.007G376700' => 'gra', 'Gorai.008G114100' => 'gra', 'Gorai.011G237900' => 'gra', 'GSVIVG01005450001' => 'vvi', 'GSVIVG01016232001' => 'vvi', 'GSVIVG01026157001' => 'vvi', 'GSVIVG01027419001' => 'vvi', 'GSVIVG01027631001' => 'vvi', 'GSVIVG01034143001' => 'vvi', 'HanXRQChr03g0093921' => 'han', 'HanXRQChr04g0120001' => 'han', 'HanXRQChr04g0122561' => 'han', 'HanXRQChr09g0246851' => 'han', 'HanXRQChr10g0293311' => 'han', 'HanXRQChr13g0425231' => 'han', 'HanXRQChr16g0532571' => 'han', 'Haze_09050' => 'cav', 'Haze_15715' => 'cav', 'Haze_15716' => 'cav', 'Haze_16803' => 'cav', 'Haze_16850' => 'cav', 'Hma1.2p1_0301F.1_g118655' => 'hma', 'Hma1.2p1_0309F.1_g120590' => 'hma', 'Hma1.2p1_0936F.1_g238900' => 'hma', 'Hma1.2p1_3552F.1_g336740' => 'hma', 'HPP92_003520' => 'vpl', 'HPP92_006628' => 'vpl', 'HPP92_006645' => 'vpl', 'HPP92_014669' => 'vpl', 'HPP92_015077' => 'vpl', 'Hund16742' => 'sun', 'Hund17022' => 'sun', 'Lalb_Chr02g0152131' => 'lal', 'Lalb_Chr05g0225371' => 'lal', 'Lalb_Chr07g0189841' => 'lal', 'Lalb_Chr07g0192961' => 'lal', 'Lalb_Chr12g0208221' => 'lal', 'Lalb_Chr13g0291211' => 'lal', 'Lalb_Chr13g0291781' => 'lal', 'Lalb_Chr18g0044651' => 'lal', 'Lalb_Chr21g0313731' => 'lal', 'Lj1g0022533' => 'lja', 'Lj2A18T50' => 'lonja', 'Lj2A92G93' => 'lonja', 'Lj3A965T73' => 'lonja', 'Lj3g0000673' => 'lja', 'Lj3g0002666' => 'lja', 'Lj4g0016985' => 'lja', 'Lj5g0003625' => 'lja', 'Lj7A529G36' => 'lonja', 'Lj9A569T49' => 'lonja', 'Lj9A604T63' => 'lonja', 'Lsat_1_v5_gn_3_132060' => 'lsa', 'Lsat_1_v5_gn_4_68941' => 'lsa', 'Lsat_1_v5_gn_5_95580' => 'lsa', 'Lsat_1_v5_gn_7_161' => 'lsa', 'Lsat_1_v5_gn_7_7041' => 'lsa', 'Lsat_1_v5_gn_9_33481' => 'lsa', 'Lsat_1_v5_gn_9_68260' => 'lsa', 'Manes.01G073100' => 'mes', 'Manes.01G266300' => 'mes', 'Manes.02G033300' => 'mes', 'Manes.05G017900' => 'mes', 'Manes.05G046100' => 'mes', 'Manes.08G080900' => 'mes', 'Manes.10G049400' => 'mes', 'Mapoly0009s0186' => 'mpo', 'Mapoly0036s0118' => 'mpo', 'Mapoly0101s0046' => 'mpo', 'MBI04_g30218_MAGBIO' => 'mbi', 'MBI04_g35564_MAGBIO' => 'mbi', 'MBI12_g34011_MAGBIO' => 'mbi', 'MBI14_g04655_MAGBIO' => 'mbi', 'MCO07G653' => 'mco', 'MCO10G173' => 'mco', 'MD01G1087100' => 'mdo', 'MD01G1104200' => 'mdo', 'MD02G1205100' => 'mdo', 'MD04G1079200' => 'mdo', 'MD04G1131400' => 'mdo', 'MD07G1121600' => 'mdo', 'MD07G1157300' => 'mdo', 'MD07G1171000' => 'mdo', 'MD12G1144500' => 'mdo', 'Medtr1g094610' => 'mtr', 'Medtr4g021795' => 'mtr', 'Medtr4g023760' => 'mtr', 'Medtr7g118050' => 'mtr', 'MELO3C005582.2' => 'cme', 'MELO3C005989.2' => 'cme', 'MELO3C006192.2' => 'cme', 'MELO3C009248.2' => 'cme', 'MELO3C019817.2' => 'cme', 'Migut.B01625' => 'egut', 'Migut.B01915' => 'egut', 'Migut.F01721' => 'egut', 'Migut.J00314' => 'egut', 'MSTRG.20742' => 'ama', 'MSTRG.8134' => 'ama', 'Nitab4.5_0000096g0010' => 'nta', 'Nitab4.5_0000202g0030' => 'nta', 'Nitab4.5_0000216g0370' => 'nta', 'Nitab4.5_0000457g0230' => 'nta', 'Nitab4.5_0001702g0170' => 'nta', 'Nitab4.5_0003607g0010' => 'nta', 'Nitab4.5_0004917g0020' => 'nta', 'Nitab4.5_0007059g0010' => 'nta', 'Nitab4.5_0007184g0010' => 'nta', 'Nitab4.5_0007346g0020' => 'nta', 'Nn1g00410' => 'nnu', 'Nn1g01252' => 'nnu', 'Nn2g11168' => 'nnu', 'Nn2g13403' => 'nnu', 'Nn2g13760' => 'nnu', 'Nn4g26380' => 'nnu', 'Oeu000806.2' => 'oeu', 'Oeu005788.1' => 'oeu', 'Oeu006900.3' => 'oeu', 'Oeu007797.1' => 'oeu', 'Oeu011932.1' => 'oeu', 'Oeu022739.1' => 'oeu', 'Oeu037918.1' => 'oeu', 'Oeu055490.2' => 'oeu', 'Os01g0844400' => 'osa', 'Os02g0819100' => 'osa', 'Os03g0804300' => 'osa', 'Os05g0458000' => 'osa', 'Os07g0467800' => 'osa', 'Os12g0602200' => 'osa', 'Peaxi162Scf00013g03444' => 'pax', 'Peaxi162Scf00094g01120' => 'pax', 'Peaxi162Scf00191g01211' => 'pax', 'Peaxi162Scf00238g01110' => 'pax', 'Peaxi162Scf00330g00719' => 'pax', 'Peaxi162Scf00627g00018' => 'pax', 'PGR031G2686' => 'pgr', 'PGR042G0809' => 'pgr', 'PGR142G0193' => 'pgr', 'PGSC0003DMG400011066' => 'stu', 'PGSC0003DMG400012041' => 'stu', 'PGSC0003DMG400013678' => 'stu', 'PGSC0003DMG400023477' => 'stu', 'PGSC0003DMG400025956' => 'stu', 'PGSC0003DMG401019151' => 'stu', 'Phvul.006G116400' => 'pvu', 'Phvul.007G097300' => 'pvu', 'Phvul.010G015000' => 'pvu', 'Phvul.010G083900' => 'pvu', 'Potri.001G117100' => 'ptr', 'Potri.002G147300' => 'ptr', 'Potri.003G115600' => 'ptr', 'Potri.006G087400' => 'ptr', 'Potri.010G226100' => 'ptr', 'Potri.014G069200' => 'ptr', 'Potri.014G104000' => 'ptr', 'Potri.016G100200' => 'ptr', 'Pp3c10_20450' => 'ppa', 'Pp3c1_42400' => 'ppa', 'Pp3c3_24390' => 'ppa', 'Pp3c3_2860' => 'ppa', 'PRCOL_00003193' => 'pco', 'Prupe.2G144500' => 'ppe', 'Prupe.2G195700' => 'ppe', 'Prupe.2G209800' => 'ppe', 'Prupe.5G080000' => 'ppe', 'Prupe.6G257900' => 'ppe', 'Psat3g001160' => 'psa', 'Psat6g181880' => 'psa', 'Psat7g233720' => 'psa', 'PSO063G7587' => 'pso', 'PSO339G2145' => 'pso', 'PSO339G3369' => 'pso', 'PSO478G2747' => 'pso', 'PSO513G0140' => 'pso', 'PSO782G1614' => 'pso', 'PSO782G4889' => 'pso', 'PSO782G5485' => 'pso', 'PSO801G0241' => 'pso', 'QL07p048854' => 'qlo', 'QL08p046745' => 'qlo', 'QL08p052606' => 'qlo', 'QL08p053414' => 'qlo', 'QL08p054868' => 'qlo', 'RcHm_v2.0_Chr1g0350251' => 'rch', 'RcHm_v2.0_Chr1g0360851' => 'rch', 'RcHm_v2.0_Chr1g0362791' => 'rch', 'RcHm_v2.0_Chr3g0466281' => 'rch', 'RcHm_v2.0_Chr7g0201481' => 'rch', 'Rhsim01G0148600' => 'rsi', 'Rhsim05G0194400' => 'rsi', 'Rhsim07G0000700' => 'rsi', 'Rhsim07G0000800' => 'rsi', 'Rhsim07G0027900' => 'rsi', 'Rhsim09G0149500' => 'rsi', 'RhsimUnG0186900' => 'rsi', 'Sabra01G0089900' => 'sbr', 'Sabra02G0114700' => 'sbr', 'Sabra02G0116300' => 'sbr', 'Sabra03G0080100' => 'sbr', 'Sabra08G0024300' => 'sbr', 'Sabra10G0174300' => 'sbr', 'Sabra14G0048900' => 'sbr', 'Sabra14G0076500' => 'sbr', 'SalBow5G2513' => 'sbo', 'Sc01g0002300' => 'sci', 'Sc01g0004450' => 'sci', 'Sc06g0001680' => 'sci', 'Sc23g0003580' => 'sci', 'Sed0000913' => 'sed', 'Sed0001655' => 'sed', 'Sed0007745' => 'sed', 'Sed0010951' => 'sed', 'Sed0017599' => 'sed', 'Sed0021405' => 'sed', 'Sed0022810' => 'sed', 'SEGI_07099' => 'sgi', 'SEGI_11931' => 'sgi', 'SEGI_13187' => 'sgi', 'SEGI_29958' => 'sgi', 'SEGI_36351' => 'sgi', 'SGA_v2.0_scaffold126G33770' => 'sas', 'SGA_v2.0_scaffold153G37003' => 'sas', 'SGA_v2.0_scaffold2G01359' => 'sas', 'SGA_v2.0_scaffold5G03064' => 'sas', 'SGA_v2.0_scaffold95G28903' => 'sas', 'SHI12701' => 'shi', 'SHI26410' => 'shi', 'SHI38997' => 'shi', 'SHI53759' => 'shi', 'SHI53886' => 'shi', 'SHI54714' => 'shi', 'SMO011G0041' => 'smo', 'SMO146G0251' => 'smo', 'SMO160G0004' => 'smo', 'SMO174G0057' => 'smo', 'SMO244G0089' => 'smo', 'SMO296G0011' => 'smo', 'Solyc01g091280.3' => 'sly', 'Solyc05g047610.3' => 'sly', 'Solyc05g047640.3' => 'sly', 'Solyc05g055630.3' => 'sly', 'Solyc10g018160.2' => 'sly', 'Solyc10g084820.2' => 'sly', 'Solyc10g086565.2' => 'sly', 'Sopen01g037030' => 'spe', 'Sopen05g027920' => 'spe', 'Sopen05g034070' => 'spe', 'Sopen10g007260' => 'spe', 'Sopen10g034260' => 'spe', 'Sopen10g035950' => 'spe', 'Sp3g07710' => 'spa', 'Sp4g27420' => 'spa', 'Sp5g02450' => 'spa', 'Sp6g01280' => 'spa', 'Sp6g38480' => 'spa', 'Sp7g20780' => 'spa', 'TAR374G1413' => 'tar', 'TAR623G1777' => 'tar', 'TAR629G2370' => 'tar', 'TAR633G1759' => 'tar', 'TAR636G3387' => 'tar', 'THA.LOC104802447' => 'tha', 'THA.LOC104813916' => 'tha', 'THA.LOC104816423' => 'tha', 'THA.LOC104817246' => 'tha', 'THA.LOC104825895' => 'tha', 'Thecc.01G335200' => 'tca', 'Thecc.01G377400' => 'tca', 'Thecc.03G262200' => 'tca', 'Thecc.05G036800' => 'tca', 'Thecc.10G080500' => 'tca', 'Thecc.10G080800' => 'tca', 'Thhalv10001560m.g' => 'esa', 'Thhalv10006120m.g' => 'esa', 'Thhalv10014375m.g' => 'esa', 'Thhalv10021264m.g' => 'esa', 'Thhalv10028856m.g' => 'esa', 'TPR.G1914' => 'tpr', 'TPR.G4757' => 'tpr', 'TPR.G5595' => 'tpr', 'TWI14G0952' => 'twi', 'TWI14G1307' => 'twi', 'TWI38G2143' => 'twi', 'TWI59G0826' => 'twi', 'TWI77G0527' => 'twi', 'TWI81G0150' => 'twi', 'unitig_21.g21018' => 'ugi', 'unitig_26.g9725' => 'ugi', 'unitig_744.g24653' => 'ugi', 'unitig_749.g13778' => 'ugi', 'unitig_899.g15035' => 'ugi', 'vmacro04296' => 'vma', 'vmacro04852' => 'vma', 'vmacro13404' => 'vma', 'vmacro20169' => 'vma', 'vmacro21014' => 'vma', 'VMungo0331G0237' => 'vmu', 'VMungo0331G0706' => 'vmu', 'VMungo0331G1361' => 'vmu', 'VMungo0331G1489' => 'vmu', 'VMungo0540G1037' => 'vmu', 'VMungo0720G2487' => 'vmu', 'VMungo0720G2721' => 'vmu', 'Zm00001eb086860' => 'zma', 'Zm00001eb104760' => 'zma', 'Zm00001eb148220' => 'zma', 'Zm00001eb259030' => 'zma', 'Zm00001eb289590' => 'zma', 'Zm00001eb420150' => 'zma' ), 'gf_id' => 'HOM05D000968', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000968' ), 'data_identifier' => 'HOM05D000968', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000968', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p31690' => 'bna', 'A03p36040' => 'bna', 'A03p53730' => 'bna', 'A04p01410' => 'bna', 'A05p05420' => 'bna', 'A05p39630' => 'bna', 'A05p39640' => 'bna', 'A09p00970' => 'bna', 'A09p53060' => 'bna', 'A10p31890' => 'bna', 'Aa31LG10G15040' => 'aar', 'Aa31LG1G21090' => 'aar', 'Aa31LG1G26900' => 'aar', 'Aa31LG3G1820' => 'aar', 'Aa31LG5G1100' => 'aar', 'Aa31LG6G4740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2265' => 'aag', 'Actinidia07998' => 'ach', 'Actinidia11266' => 'ach', 'Actinidia12682' => 'ach', 'Actinidia26479' => 'ach', 'Actinidia31406' => 'ach', 'Actinidia32437' => 'ach', 'Actinidia38862' => 'ach', 'Ah.05g174230' => 'amhyb', 'Ah.05g179070' => 'amhyb', 'Ah.05g179090' => 'amhyb', 'Ah.12g059950' => 'amhyb', 'AL3G20480' => 'aly', 'AL4G44520' => 'aly', 'AL5G43110' => 'aly', 'AL6G13890' => 'aly', 'AL6G52620' => 'aly', 'AL7G30830' => 'aly', 'Aqoxy1G00899' => 'aox', 'Aqoxy5G04333' => 'aox', 'Aqoxy7G00641' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3IZ0NN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4EF6AW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W9P8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79GA3M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C43NQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFCU6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G95YVJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCHK29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LU1UG8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX91RN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGB4B1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8DA0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9H7JI' => 'arhy', 'AT3G09320' => 'ath', 'AT3G60800' => 'ath', 'AT4G00840' => 'ath', 'AT4G22750' => 'ath', 'AT5G04270' => 'ath', 'ATR0090G003' => 'atr', 'ATR0559G349' => 'atr', 'ATR0680G261' => 'atr', 'ATR0810G048' => 'atr', 'Atru.chr12.831' => 'acertr', 'Atru.chr5.303' => 'acertr', 'Atru.chr5.748' => 'acertr', 'Atru.chr8.1999' => 'acertr', 'Atru.chr9.1436' => 'acertr', 'AUR62004211' => 'cqu', 'AUR62004548' => 'cqu', 'AUR62013637' => 'cqu', 'AUR62022662' => 'cqu', 'AUR62025777' => 'cqu', 'AUR62042386' => 'cqu', 'BcaB01g02310' => 'bca', 'BcaB01g06062' => 'bca', 'BcaB02g08975' => 'bca', 'BcaB02g08980' => 'bca', 'BcaC01g04228' => 'bca', 'BcaC01g06830' => 'bca', 'BcaC02g10186' => 'bca', 'BcaC02g12214' => 'bca', 'BcaC04g24101' => 'bca', 'BcaC05g29520' => 'bca', 'BcaC05g29661' => 'bca', 'BcaC06g32130' => 'bca', 'BcaC06g32131' => 'bca', 'BcaC07g40601' => 'bca', 'BcaC07g42641' => 'bca', 'BcaNung01038' => 'bca', 'BcaNung01676' => 'bca', 'BcaNung02480' => 'bca', 'BcaNung07376' => 'bca', 'BolC3t16146H' => 'bol', 'BolC3t16637H' => 'bol', 'BolC4t22257H' => 'bol', 'BolC4t24728H' => 'bol', 'BolC5t34517H' => 'bol', 'BolC7t45703H' => 'bol', 'BolC8t51166H' => 'bol', 'BolC9t53038H' => 'bol', 'BolC9t60000H' => 'bol', 'BraA01t01345Z' => 'bra', 'BraA01t01346Z' => 'bra', 'BraA01t01348Z' => 'bra', 'BraA03t12347Z' => 'bra', 'BraA03t12775Z' => 'bra', 'BraA03t14439Z' => 'bra', 'BraA04t15860Z' => 'bra', 'BraA05t19511Z' => 'bra', 'BraA05t22746Z' => 'bra', 'BraA09t35767Z' => 'bra', 'BraA09t40732Z' => 'bra', 'BraA10t45233Z' => 'bra', 'C03p38720' => 'bna', 'C03p43680' => 'bna', 'C04p06350' => 'bna', 'C04p31800' => 'bna', 'C05p58680' => 'bna', 'C07p52110' => 'bna', 'C08p35760' => 'bna', 'C09p01050' => 'bna', 'C09p72600' => 'bna', 'CAN.G106.2' => 'can', 'CAN.G1482.1' => 'can', 'CAN.G324.12' => 'can', 'CAN.G388.20' => 'can', 'CAN.G412.7' => 'can', 'CAN.G694.32' => 'can', 'CAN.G92.12' => 'can', 'CANSAT11G2353' => 'cansat', 'CANSAT21G1398' => 'cansat', 'CANSAT56G2456' => 'cansat', 'CANSAT56G3031' => 'cansat', 'CANSAT56G4539' => 'cansat', 'CARHR083680' => 'chi', 'CARHR171190' => 'chi', 'CARHR209010' => 'chi', 'CARHR229680' => 'chi', 'CARHR249490' => 'chi', 'Carub.0003s0844' => 'cru', 'Carub.0005s2755' => 'cru', 'Carub.0006s0322' => 'cru', 'Carub.0006s3586' => 'cru', 'Carub.0007s1855' => 'cru', 'Ca_07808_v3' => 'car', 'Ca_09535_v3' => 'car', 'Ca_10548_v3' => 'car', 'Ca_19913_v3' => 'car', 'Ca_19916_v3' => 'car', 'Ca_19975_v3' => 'car', 'CBR_g22876' => 'cbr', 'CBR_g22879' => 'cbr', 'CBR_g38491' => 'cbr', 'CBR_g54185' => 'cbr', 'CBR_g54190' => 'cbr', 'Cc02_g11020' => 'ccan', 'Cc02_g23920' => 'ccan', 'Cc02_g39860' => 'ccan', 'Cc02_g39870' => 'ccan', 'Cc03_g06760' => 'ccan', 'Cc06_g02450' => 'ccan', 'Cc09_g09450' => 'ccan', 'CDE02G1959' => 'cde', 'CDE04G0600' => 'cde', 'CDE07G1996' => 'cde', 'CDE07G2078' => 'cde', 'CDE11G0611' => 'cde', 'Cfa001683' => 'cfa', 'Cfa001734' => 'cfa', 'Cfa001737' => 'cfa', 'Cfa003751' => 'cfa', 'Cfa012019' => 'cfa', 'Cfa017353' => 'cfa', 'Cfa017732' => 'cfa', 'Cfa022464' => 'cfa', 'Ciclev10012400m.g' => 'ccl', 'Ciclev10021242m.g' => 'ccl', 'Ciclev10021302m.g' => 'ccl', 'Ciclev10021463m.g' => 'ccl', 'Ciclev10032359m.g' => 'ccl', 'CiPaw.01G081000' => 'cil', 'CiPaw.01G262500' => 'cil', 'CiPaw.01G269800' => 'cil', 'CiPaw.02G168400' => 'cil', 'CiPaw.05G119500' => 'cil', 'CiPaw.11G147300' => 'cil', 'ClCG01G003630' => 'cla', 'ClCG05G000510' => 'cla', 'ClCG05G002300' => 'cla', 'ClCG08G007650' => 'cla', 'ClCG10G021250' => 'cla', 'COL.COLO4_06218' => 'col', 'COL.COLO4_12538' => 'col', 'COL.COLO4_14775' => 'col', 'COL.COLO4_23875' => 'col', 'Cpa.g.sc141.16' => 'cpa', 'Cpa.g.sc169.16' => 'cpa', 'Cpa.g.sc244.4' => 'cpa', 'Cpa.g.sc244.5' => 'cpa', 'Cpa.g.sc29.87' => 'cpa', 'Cpa.g.sc53.115' => 'cpa', 'Cre03.g207502' => 'cre', 'Cre06.g277000' => 'cre', 'Cre09.g394050' => 'cre', 'CsaV3_3G007680' => 'csa', 'CsaV3_3G009710' => 'csa', 'CsaV3_3G034790' => 'csa', 'CsaV3_5G003750' => 'csa', 'CsaV3_6G036620' => 'csa', 'CSS0002288' => 'camsi', 'CSS0011250' => 'camsi', 'CSS0021619' => 'camsi', 'CSS0046701' => 'camsi', 'DCAR_006420' => 'dca', 'DCAR_006865' => 'dca', 'DCAR_008558' => 'dca', 'DCAR_028754' => 'dca', 'DCAR_028755' => 'dca', 'Dinv31218' => 'din', 'Dinv32371' => 'din', 'Dinv34250' => 'din', 'Dinv37156' => 'din', 'Dinv43704' => 'din', 'Duzib093G1811' => 'dzi', 'Duzib106G1622' => 'dzi', 'Duzib114G0504' => 'dzi', 'Duzib128G0338' => 'dzi', 'Duzib128G1577' => 'dzi', 'Duzib133G0104' => 'dzi', 'Duzib133G1080' => 'dzi', 'Duzib138G0324' => 'dzi', 'Duzib138G0394' => 'dzi', 'Duzib205G0122' => 'dzi', 'Duzib268G1020' => 'dzi', 'Duzib268G1359' => 'dzi', 'ECA232G3929' => 'eca', 'ECA236G2210' => 'eca', 'ECA236G2287' => 'eca', 'ECA240G4568' => 'eca', 'ECA247G0894' => 'eca', 'EL10Ac1g00200' => 'bvu', 'EL10Ac1g00886' => 'bvu', 'EL10As1g23091' => 'bvu', 'EL10As1g23092' => 'bvu', 'Eucgr.A01284' => 'egr', 'Eucgr.A01285' => 'egr', 'Eucgr.D02456' => 'egr', 'Eucgr.E00018' => 'egr', 'Eucgr.E01439' => 'egr', 'Eucgr.G02859' => 'egr', 'FAN01G0168' => 'fan', 'FAN01G0453' => 'fan', 'FAN01G2761' => 'fan', 'FAN02G1239' => 'fan', 'FAN03G0645' => 'fan', 'FAN03G2707' => 'fan', 'FAN03G2978' => 'fan', 'FAN04G0227' => 'fan', 'FAN06G0091' => 'fan', 'FAN06G1418' => 'fan', 'FAN06G1512' => 'fan', 'FAN06G1986' => 'fan', 'FAN06G2905' => 'fan', 'FAN06G4325' => 'fan', 'FAN08G0033' => 'fan', 'FAN09G0642' => 'fan', 'FAN10G1763' => 'fan', 'FAN10G2026' => 'fan', 'FAN10G2513' => 'fan', 'FAN10G3402' => 'fan', 'FAN10G3564' => 'fan', 'FAN10G3987' => 'fan', 'FAN13G1490' => 'fan', 'FAN14G5857' => 'fan', 'FAN18G1188' => 'fan', 'FvH4_5g00750' => 'fve', 'FvH4_6g13410' => 'fve', 'FvH4_7g11740' => 'fve', 'FvH4_7g17410' => 'fve', 'FvH4_7g18860' => 'fve', 'Glyma.01G099100' => 'gma', 'Glyma.01G142300' => 'gma', 'Glyma.03G025500' => 'gma', 'Glyma.03G069700' => 'gma', 'Glyma.03G260000' => 'gma', 'Glyma.09G269800' => 'gma', 'Glyma.10G208700' => 'gma', 'Glyma.18G220400' => 'gma', 'Glyma.20G182000' => 'gma', 'Gohir.A01G221726' => 'ghi', 'Gohir.A07G134600' => 'ghi', 'Gohir.A07G146000' => 'ghi', 'Gohir.A08G173900' => 'ghi', 'Gohir.A09G194900' => 'ghi', 'Gohir.A10G204100' => 'ghi', 'Gohir.A11G080600' => 'ghi', 'Gohir.A11G327500' => 'ghi', 'Gohir.A12G101800' => 'ghi', 'Gohir.D01G211200' => 'ghi', 'Gohir.D07G139200' => 'ghi', 'Gohir.D07G152100' => 'ghi', 'Gohir.D08G192600' => 'ghi', 'Gohir.D09G189200' => 'ghi', 'Gohir.D10G212000' => 'ghi', 'Gohir.D11G085200' => 'ghi', 'Gohir.D11G346400' => 'ghi', 'Gohir.D12G104800' => 'ghi', 'Gorai.001G151300' => 'gra', 'Gorai.001G174100' => 'gra', 'Gorai.002G257000' => 'gra', 'Gorai.004G202600' => 'gra', 'Gorai.007G090900' => 'gra', 'Gorai.007G376700' => 'gra', 'Gorai.008G114100' => 'gra', 'Gorai.011G237900' => 'gra', 'GSVIVG01005450001' => 'vvi', 'GSVIVG01016232001' => 'vvi', 'GSVIVG01026157001' => 'vvi', 'GSVIVG01027419001' => 'vvi', 'GSVIVG01027631001' => 'vvi', 'GSVIVG01034143001' => 'vvi', 'HanXRQChr03g0093921' => 'han', 'HanXRQChr04g0120001' => 'han', 'HanXRQChr04g0122561' => 'han', 'HanXRQChr09g0246851' => 'han', 'HanXRQChr10g0293311' => 'han', 'HanXRQChr13g0425231' => 'han', 'HanXRQChr16g0532571' => 'han', 'Haze_09050' => 'cav', 'Haze_15715' => 'cav', 'Haze_15716' => 'cav', 'Haze_16803' => 'cav', 'Haze_16850' => 'cav', 'Hma1.2p1_0301F.1_g118655' => 'hma', 'Hma1.2p1_0309F.1_g120590' => 'hma', 'Hma1.2p1_0936F.1_g238900' => 'hma', 'Hma1.2p1_3552F.1_g336740' => 'hma', 'HPP92_003520' => 'vpl', 'HPP92_006628' => 'vpl', 'HPP92_006645' => 'vpl', 'HPP92_014669' => 'vpl', 'HPP92_015077' => 'vpl', 'Hund16742' => 'sun', 'Hund17022' => 'sun', 'Lalb_Chr02g0152131' => 'lal', 'Lalb_Chr05g0225371' => 'lal', 'Lalb_Chr07g0189841' => 'lal', 'Lalb_Chr07g0192961' => 'lal', 'Lalb_Chr12g0208221' => 'lal', 'Lalb_Chr13g0291211' => 'lal', 'Lalb_Chr13g0291781' => 'lal', 'Lalb_Chr18g0044651' => 'lal', 'Lalb_Chr21g0313731' => 'lal', 'Lj1g0022533' => 'lja', 'Lj2A18T50' => 'lonja', 'Lj2A92G93' => 'lonja', 'Lj3A965T73' => 'lonja', 'Lj3g0000673' => 'lja', 'Lj3g0002666' => 'lja', 'Lj4g0016985' => 'lja', 'Lj5g0003625' => 'lja', 'Lj7A529G36' => 'lonja', 'Lj9A569T49' => 'lonja', 'Lj9A604T63' => 'lonja', 'Lsat_1_v5_gn_3_132060' => 'lsa', 'Lsat_1_v5_gn_4_68941' => 'lsa', 'Lsat_1_v5_gn_5_95580' => 'lsa', 'Lsat_1_v5_gn_7_161' => 'lsa', 'Lsat_1_v5_gn_7_7041' => 'lsa', 'Lsat_1_v5_gn_9_33481' => 'lsa', 'Lsat_1_v5_gn_9_68260' => 'lsa', 'Manes.01G073100' => 'mes', 'Manes.01G266300' => 'mes', 'Manes.02G033300' => 'mes', 'Manes.05G017900' => 'mes', 'Manes.05G046100' => 'mes', 'Manes.08G080900' => 'mes', 'Manes.10G049400' => 'mes', 'Mapoly0009s0186' => 'mpo', 'Mapoly0036s0118' => 'mpo', 'Mapoly0101s0046' => 'mpo', 'MBI04_g30218_MAGBIO' => 'mbi', 'MBI04_g35564_MAGBIO' => 'mbi', 'MBI12_g34011_MAGBIO' => 'mbi', 'MBI14_g04655_MAGBIO' => 'mbi', 'MCO07G653' => 'mco', 'MCO10G173' => 'mco', 'MD01G1087100' => 'mdo', 'MD01G1104200' => 'mdo', 'MD02G1205100' => 'mdo', 'MD04G1079200' => 'mdo', 'MD04G1131400' => 'mdo', 'MD07G1121600' => 'mdo', 'MD07G1157300' => 'mdo', 'MD07G1171000' => 'mdo', 'MD12G1144500' => 'mdo', 'Medtr1g094610' => 'mtr', 'Medtr4g021795' => 'mtr', 'Medtr4g023760' => 'mtr', 'Medtr7g118050' => 'mtr', 'MELO3C005582.2' => 'cme', 'MELO3C005989.2' => 'cme', 'MELO3C006192.2' => 'cme', 'MELO3C009248.2' => 'cme', 'MELO3C019817.2' => 'cme', 'Migut.B01625' => 'egut', 'Migut.B01915' => 'egut', 'Migut.F01721' => 'egut', 'Migut.J00314' => 'egut', 'MSTRG.20742' => 'ama', 'MSTRG.8134' => 'ama', 'Nitab4.5_0000096g0010' => 'nta', 'Nitab4.5_0000202g0030' => 'nta', 'Nitab4.5_0000216g0370' => 'nta', 'Nitab4.5_0000457g0230' => 'nta', 'Nitab4.5_0001702g0170' => 'nta', 'Nitab4.5_0003607g0010' => 'nta', 'Nitab4.5_0004917g0020' => 'nta', 'Nitab4.5_0007059g0010' => 'nta', 'Nitab4.5_0007184g0010' => 'nta', 'Nitab4.5_0007346g0020' => 'nta', 'Nn1g00410' => 'nnu', 'Nn1g01252' => 'nnu', 'Nn2g11168' => 'nnu', 'Nn2g13403' => 'nnu', 'Nn2g13760' => 'nnu', 'Nn4g26380' => 'nnu', 'Oeu000806.2' => 'oeu', 'Oeu005788.1' => 'oeu', 'Oeu006900.3' => 'oeu', 'Oeu007797.1' => 'oeu', 'Oeu011932.1' => 'oeu', 'Oeu022739.1' => 'oeu', 'Oeu037918.1' => 'oeu', 'Oeu055490.2' => 'oeu', 'Os01g0844400' => 'osa', 'Os02g0819100' => 'osa', 'Os03g0804300' => 'osa', 'Os05g0458000' => 'osa', 'Os07g0467800' => 'osa', 'Os12g0602200' => 'osa', 'Peaxi162Scf00013g03444' => 'pax', 'Peaxi162Scf00094g01120' => 'pax', 'Peaxi162Scf00191g01211' => 'pax', 'Peaxi162Scf00238g01110' => 'pax', 'Peaxi162Scf00330g00719' => 'pax', 'Peaxi162Scf00627g00018' => 'pax', 'PGR031G2686' => 'pgr', 'PGR042G0809' => 'pgr', 'PGR142G0193' => 'pgr', 'PGSC0003DMG400011066' => 'stu', 'PGSC0003DMG400012041' => 'stu', 'PGSC0003DMG400013678' => 'stu', 'PGSC0003DMG400023477' => 'stu', 'PGSC0003DMG400025956' => 'stu', 'PGSC0003DMG401019151' => 'stu', 'Phvul.006G116400' => 'pvu', 'Phvul.007G097300' => 'pvu', 'Phvul.010G015000' => 'pvu', 'Phvul.010G083900' => 'pvu', 'Potri.001G117100' => 'ptr', 'Potri.002G147300' => 'ptr', 'Potri.003G115600' => 'ptr', 'Potri.006G087400' => 'ptr', 'Potri.010G226100' => 'ptr', 'Potri.014G069200' => 'ptr', 'Potri.014G104000' => 'ptr', 'Potri.016G100200' => 'ptr', 'Pp3c10_20450' => 'ppa', 'Pp3c1_42400' => 'ppa', 'Pp3c3_24390' => 'ppa', 'Pp3c3_2860' => 'ppa', 'PRCOL_00003193' => 'pco', 'Prupe.2G144500' => 'ppe', 'Prupe.2G195700' => 'ppe', 'Prupe.2G209800' => 'ppe', 'Prupe.5G080000' => 'ppe', 'Prupe.6G257900' => 'ppe', 'Psat3g001160' => 'psa', 'Psat6g181880' => 'psa', 'Psat7g233720' => 'psa', 'PSO063G7587' => 'pso', 'PSO339G2145' => 'pso', 'PSO339G3369' => 'pso', 'PSO478G2747' => 'pso', 'PSO513G0140' => 'pso', 'PSO782G1614' => 'pso', 'PSO782G4889' => 'pso', 'PSO782G5485' => 'pso', 'PSO801G0241' => 'pso', 'QL07p048854' => 'qlo', 'QL08p046745' => 'qlo', 'QL08p052606' => 'qlo', 'QL08p053414' => 'qlo', 'QL08p054868' => 'qlo', 'RcHm_v2.0_Chr1g0350251' => 'rch', 'RcHm_v2.0_Chr1g0360851' => 'rch', 'RcHm_v2.0_Chr1g0362791' => 'rch', 'RcHm_v2.0_Chr3g0466281' => 'rch', 'RcHm_v2.0_Chr7g0201481' => 'rch', 'Rhsim01G0148600' => 'rsi', 'Rhsim05G0194400' => 'rsi', 'Rhsim07G0000700' => 'rsi', 'Rhsim07G0000800' => 'rsi', 'Rhsim07G0027900' => 'rsi', 'Rhsim09G0149500' => 'rsi', 'RhsimUnG0186900' => 'rsi', 'Sabra01G0089900' => 'sbr', 'Sabra02G0114700' => 'sbr', 'Sabra02G0116300' => 'sbr', 'Sabra03G0080100' => 'sbr', 'Sabra08G0024300' => 'sbr', 'Sabra10G0174300' => 'sbr', 'Sabra14G0048900' => 'sbr', 'Sabra14G0076500' => 'sbr', 'SalBow5G2513' => 'sbo', 'Sc01g0002300' => 'sci', 'Sc01g0004450' => 'sci', 'Sc06g0001680' => 'sci', 'Sc23g0003580' => 'sci', 'Sed0000913' => 'sed', 'Sed0001655' => 'sed', 'Sed0007745' => 'sed', 'Sed0010951' => 'sed', 'Sed0017599' => 'sed', 'Sed0021405' => 'sed', 'Sed0022810' => 'sed', 'SEGI_07099' => 'sgi', 'SEGI_11931' => 'sgi', 'SEGI_13187' => 'sgi', 'SEGI_29958' => 'sgi', 'SEGI_36351' => 'sgi', 'SGA_v2.0_scaffold126G33770' => 'sas', 'SGA_v2.0_scaffold153G37003' => 'sas', 'SGA_v2.0_scaffold2G01359' => 'sas', 'SGA_v2.0_scaffold5G03064' => 'sas', 'SGA_v2.0_scaffold95G28903' => 'sas', 'SHI12701' => 'shi', 'SHI26410' => 'shi', 'SHI38997' => 'shi', 'SHI53759' => 'shi', 'SHI53886' => 'shi', 'SHI54714' => 'shi', 'SMO011G0041' => 'smo', 'SMO146G0251' => 'smo', 'SMO160G0004' => 'smo', 'SMO174G0057' => 'smo', 'SMO244G0089' => 'smo', 'SMO296G0011' => 'smo', 'Solyc01g091280.3' => 'sly', 'Solyc05g047610.3' => 'sly', 'Solyc05g047640.3' => 'sly', 'Solyc05g055630.3' => 'sly', 'Solyc10g018160.2' => 'sly', 'Solyc10g084820.2' => 'sly', 'Solyc10g086565.2' => 'sly', 'Sopen01g037030' => 'spe', 'Sopen05g027920' => 'spe', 'Sopen05g034070' => 'spe', 'Sopen10g007260' => 'spe', 'Sopen10g034260' => 'spe', 'Sopen10g035950' => 'spe', 'Sp3g07710' => 'spa', 'Sp4g27420' => 'spa', 'Sp5g02450' => 'spa', 'Sp6g01280' => 'spa', 'Sp6g38480' => 'spa', 'Sp7g20780' => 'spa', 'TAR374G1413' => 'tar', 'TAR623G1777' => 'tar', 'TAR629G2370' => 'tar', 'TAR633G1759' => 'tar', 'TAR636G3387' => 'tar', 'THA.LOC104802447' => 'tha', 'THA.LOC104813916' => 'tha', 'THA.LOC104816423' => 'tha', 'THA.LOC104817246' => 'tha', 'THA.LOC104825895' => 'tha', 'Thecc.01G335200' => 'tca', 'Thecc.01G377400' => 'tca', 'Thecc.03G262200' => 'tca', 'Thecc.05G036800' => 'tca', 'Thecc.10G080500' => 'tca', 'Thecc.10G080800' => 'tca', 'Thhalv10001560m.g' => 'esa', 'Thhalv10006120m.g' => 'esa', 'Thhalv10014375m.g' => 'esa', 'Thhalv10021264m.g' => 'esa', 'Thhalv10028856m.g' => 'esa', 'TPR.G1914' => 'tpr', 'TPR.G4757' => 'tpr', 'TPR.G5595' => 'tpr', 'TWI14G0952' => 'twi', 'TWI14G1307' => 'twi', 'TWI38G2143' => 'twi', 'TWI59G0826' => 'twi', 'TWI77G0527' => 'twi', 'TWI81G0150' => 'twi', 'unitig_21.g21018' => 'ugi', 'unitig_26.g9725' => 'ugi', 'unitig_744.g24653' => 'ugi', 'unitig_749.g13778' => 'ugi', 'unitig_899.g15035' => 'ugi', 'vmacro04296' => 'vma', 'vmacro04852' => 'vma', 'vmacro13404' => 'vma', 'vmacro20169' => 'vma', 'vmacro21014' => 'vma', 'VMungo0331G0237' => 'vmu', 'VMungo0331G0706' => 'vmu', 'VMungo0331G1361' => 'vmu', 'VMungo0331G1489' => 'vmu', 'VMungo0540G1037' => 'vmu', 'VMungo0720G2487' => 'vmu', 'VMungo0720G2721' => 'vmu', 'Zm00001eb086860' => 'zma', 'Zm00001eb104760' => 'zma', 'Zm00001eb148220' => 'zma', 'Zm00001eb259030' => 'zma', 'Zm00001eb289590' => 'zma', 'Zm00001eb420150' => 'zma' ) $gf_id = 'HOM05D000968' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000968' ) $data_identifier = 'HOM05D000968' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 19, 'bol' => (int) 9, 'bra' => (int) 12, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 5, 'ccan' => (int) 7, 'cde' => (int) 5, 'cfa' => (int) 8, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 4, 'dca' => (int) 5, 'din' => (int) 5, 'dzi' => (int) 12, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 25, 'fve' => (int) 5, 'gma' => (int) 9, 'ghi' => (int) 18, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 7, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 5, 'sun' => (int) 2, 'lal' => (int) 9, 'lja' => (int) 5, 'lonja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 9, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 2, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 3, 'stu' => (int) 6, 'pvu' => (int) 4, 'ptr' => (int) 8, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 3, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 1, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 5, 'sas' => (int) 5, 'shi' => (int) 6, 'smo' => (int) 6, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 3, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420150' $species_info = array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ) $local_species = 'pso' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000968', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p31690' => 'bna', 'A03p36040' => 'bna', 'A03p53730' => 'bna', 'A04p01410' => 'bna', 'A05p05420' => 'bna', 'A05p39630' => 'bna', 'A05p39640' => 'bna', 'A09p00970' => 'bna', 'A09p53060' => 'bna', 'A10p31890' => 'bna', 'Aa31LG10G15040' => 'aar', 'Aa31LG1G21090' => 'aar', 'Aa31LG1G26900' => 'aar', 'Aa31LG3G1820' => 'aar', 'Aa31LG5G1100' => 'aar', 'Aa31LG6G4740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2265' => 'aag', 'Actinidia07998' => 'ach', 'Actinidia11266' => 'ach', 'Actinidia12682' => 'ach', 'Actinidia26479' => 'ach', 'Actinidia31406' => 'ach', 'Actinidia32437' => 'ach', 'Actinidia38862' => 'ach', 'Ah.05g174230' => 'amhyb', 'Ah.05g179070' => 'amhyb', 'Ah.05g179090' => 'amhyb', 'Ah.12g059950' => 'amhyb', 'AL3G20480' => 'aly', 'AL4G44520' => 'aly', 'AL5G43110' => 'aly', 'AL6G13890' => 'aly', 'AL6G52620' => 'aly', 'AL7G30830' => 'aly', 'Aqoxy1G00899' => 'aox', 'Aqoxy5G04333' => 'aox', 'Aqoxy7G00641' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3IZ0NN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4EF6AW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W9P8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79GA3M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C43NQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFCU6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G95YVJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCHK29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LU1UG8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX91RN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGB4B1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8DA0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9H7JI' => 'arhy', 'AT3G09320' => 'ath', 'AT3G60800' => 'ath', 'AT4G00840' => 'ath', 'AT4G22750' => 'ath', 'AT5G04270' => 'ath', 'ATR0090G003' => 'atr', 'ATR0559G349' => 'atr', 'ATR0680G261' => 'atr', 'ATR0810G048' => 'atr', 'Atru.chr12.831' => 'acertr', 'Atru.chr5.303' => 'acertr', 'Atru.chr5.748' => 'acertr', 'Atru.chr8.1999' => 'acertr', 'Atru.chr9.1436' => 'acertr', 'AUR62004211' => 'cqu', 'AUR62004548' => 'cqu', 'AUR62013637' => 'cqu', 'AUR62022662' => 'cqu', 'AUR62025777' => 'cqu', 'AUR62042386' => 'cqu', 'BcaB01g02310' => 'bca', 'BcaB01g06062' => 'bca', 'BcaB02g08975' => 'bca', 'BcaB02g08980' => 'bca', 'BcaC01g04228' => 'bca', 'BcaC01g06830' => 'bca', 'BcaC02g10186' => 'bca', 'BcaC02g12214' => 'bca', 'BcaC04g24101' => 'bca', 'BcaC05g29520' => 'bca', 'BcaC05g29661' => 'bca', 'BcaC06g32130' => 'bca', 'BcaC06g32131' => 'bca', 'BcaC07g40601' => 'bca', 'BcaC07g42641' => 'bca', 'BcaNung01038' => 'bca', 'BcaNung01676' => 'bca', 'BcaNung02480' => 'bca', 'BcaNung07376' => 'bca', 'BolC3t16146H' => 'bol', 'BolC3t16637H' => 'bol', 'BolC4t22257H' => 'bol', 'BolC4t24728H' => 'bol', 'BolC5t34517H' => 'bol', 'BolC7t45703H' => 'bol', 'BolC8t51166H' => 'bol', 'BolC9t53038H' => 'bol', 'BolC9t60000H' => 'bol', 'BraA01t01345Z' => 'bra', 'BraA01t01346Z' => 'bra', 'BraA01t01348Z' => 'bra', 'BraA03t12347Z' => 'bra', 'BraA03t12775Z' => 'bra', 'BraA03t14439Z' => 'bra', 'BraA04t15860Z' => 'bra', 'BraA05t19511Z' => 'bra', 'BraA05t22746Z' => 'bra', 'BraA09t35767Z' => 'bra', 'BraA09t40732Z' => 'bra', 'BraA10t45233Z' => 'bra', 'C03p38720' => 'bna', 'C03p43680' => 'bna', 'C04p06350' => 'bna', 'C04p31800' => 'bna', 'C05p58680' => 'bna', 'C07p52110' => 'bna', 'C08p35760' => 'bna', 'C09p01050' => 'bna', 'C09p72600' => 'bna', 'CAN.G106.2' => 'can', 'CAN.G1482.1' => 'can', 'CAN.G324.12' => 'can', 'CAN.G388.20' => 'can', 'CAN.G412.7' => 'can', 'CAN.G694.32' => 'can', 'CAN.G92.12' => 'can', 'CANSAT11G2353' => 'cansat', 'CANSAT21G1398' => 'cansat', 'CANSAT56G2456' => 'cansat', 'CANSAT56G3031' => 'cansat', 'CANSAT56G4539' => 'cansat', 'CARHR083680' => 'chi', 'CARHR171190' => 'chi', 'CARHR209010' => 'chi', 'CARHR229680' => 'chi', 'CARHR249490' => 'chi', 'Carub.0003s0844' => 'cru', 'Carub.0005s2755' => 'cru', 'Carub.0006s0322' => 'cru', 'Carub.0006s3586' => 'cru', 'Carub.0007s1855' => 'cru', 'Ca_07808_v3' => 'car', 'Ca_09535_v3' => 'car', 'Ca_10548_v3' => 'car', 'Ca_19913_v3' => 'car', 'Ca_19916_v3' => 'car', 'Ca_19975_v3' => 'car', 'CBR_g22876' => 'cbr', 'CBR_g22879' => 'cbr', 'CBR_g38491' => 'cbr', 'CBR_g54185' => 'cbr', 'CBR_g54190' => 'cbr', 'Cc02_g11020' => 'ccan', 'Cc02_g23920' => 'ccan', 'Cc02_g39860' => 'ccan', 'Cc02_g39870' => 'ccan', 'Cc03_g06760' => 'ccan', 'Cc06_g02450' => 'ccan', 'Cc09_g09450' => 'ccan', 'CDE02G1959' => 'cde', 'CDE04G0600' => 'cde', 'CDE07G1996' => 'cde', 'CDE07G2078' => 'cde', 'CDE11G0611' => 'cde', 'Cfa001683' => 'cfa', 'Cfa001734' => 'cfa', 'Cfa001737' => 'cfa', 'Cfa003751' => 'cfa', 'Cfa012019' => 'cfa', 'Cfa017353' => 'cfa', 'Cfa017732' => 'cfa', 'Cfa022464' => 'cfa', 'Ciclev10012400m.g' => 'ccl', 'Ciclev10021242m.g' => 'ccl', 'Ciclev10021302m.g' => 'ccl', 'Ciclev10021463m.g' => 'ccl', 'Ciclev10032359m.g' => 'ccl', 'CiPaw.01G081000' => 'cil', 'CiPaw.01G262500' => 'cil', 'CiPaw.01G269800' => 'cil', 'CiPaw.02G168400' => 'cil', 'CiPaw.05G119500' => 'cil', 'CiPaw.11G147300' => 'cil', 'ClCG01G003630' => 'cla', 'ClCG05G000510' => 'cla', 'ClCG05G002300' => 'cla', 'ClCG08G007650' => 'cla', 'ClCG10G021250' => 'cla', 'COL.COLO4_06218' => 'col', 'COL.COLO4_12538' => 'col', 'COL.COLO4_14775' => 'col', 'COL.COLO4_23875' => 'col', 'Cpa.g.sc141.16' => 'cpa', 'Cpa.g.sc169.16' => 'cpa', 'Cpa.g.sc244.4' => 'cpa', 'Cpa.g.sc244.5' => 'cpa', 'Cpa.g.sc29.87' => 'cpa', 'Cpa.g.sc53.115' => 'cpa', 'Cre03.g207502' => 'cre', 'Cre06.g277000' => 'cre', 'Cre09.g394050' => 'cre', 'CsaV3_3G007680' => 'csa', 'CsaV3_3G009710' => 'csa', 'CsaV3_3G034790' => 'csa', 'CsaV3_5G003750' => 'csa', 'CsaV3_6G036620' => 'csa', 'CSS0002288' => 'camsi', 'CSS0011250' => 'camsi', 'CSS0021619' => 'camsi', 'CSS0046701' => 'camsi', 'DCAR_006420' => 'dca', 'DCAR_006865' => 'dca', 'DCAR_008558' => 'dca', 'DCAR_028754' => 'dca', 'DCAR_028755' => 'dca', 'Dinv31218' => 'din', 'Dinv32371' => 'din', 'Dinv34250' => 'din', 'Dinv37156' => 'din', 'Dinv43704' => 'din', 'Duzib093G1811' => 'dzi', 'Duzib106G1622' => 'dzi', 'Duzib114G0504' => 'dzi', 'Duzib128G0338' => 'dzi', 'Duzib128G1577' => 'dzi', 'Duzib133G0104' => 'dzi', 'Duzib133G1080' => 'dzi', 'Duzib138G0324' => 'dzi', 'Duzib138G0394' => 'dzi', 'Duzib205G0122' => 'dzi', 'Duzib268G1020' => 'dzi', 'Duzib268G1359' => 'dzi', 'ECA232G3929' => 'eca', 'ECA236G2210' => 'eca', 'ECA236G2287' => 'eca', 'ECA240G4568' => 'eca', 'ECA247G0894' => 'eca', 'EL10Ac1g00200' => 'bvu', 'EL10Ac1g00886' => 'bvu', 'EL10As1g23091' => 'bvu', 'EL10As1g23092' => 'bvu', 'Eucgr.A01284' => 'egr', 'Eucgr.A01285' => 'egr', 'Eucgr.D02456' => 'egr', 'Eucgr.E00018' => 'egr', 'Eucgr.E01439' => 'egr', 'Eucgr.G02859' => 'egr', 'FAN01G0168' => 'fan', 'FAN01G0453' => 'fan', 'FAN01G2761' => 'fan', 'FAN02G1239' => 'fan', 'FAN03G0645' => 'fan', 'FAN03G2707' => 'fan', 'FAN03G2978' => 'fan', 'FAN04G0227' => 'fan', 'FAN06G0091' => 'fan', 'FAN06G1418' => 'fan', 'FAN06G1512' => 'fan', 'FAN06G1986' => 'fan', 'FAN06G2905' => 'fan', 'FAN06G4325' => 'fan', 'FAN08G0033' => 'fan', 'FAN09G0642' => 'fan', 'FAN10G1763' => 'fan', 'FAN10G2026' => 'fan', 'FAN10G2513' => 'fan', 'FAN10G3402' => 'fan', 'FAN10G3564' => 'fan', 'FAN10G3987' => 'fan', 'FAN13G1490' => 'fan', 'FAN14G5857' => 'fan', 'FAN18G1188' => 'fan', 'FvH4_5g00750' => 'fve', 'FvH4_6g13410' => 'fve', 'FvH4_7g11740' => 'fve', 'FvH4_7g17410' => 'fve', 'FvH4_7g18860' => 'fve', 'Glyma.01G099100' => 'gma', 'Glyma.01G142300' => 'gma', 'Glyma.03G025500' => 'gma', 'Glyma.03G069700' => 'gma', 'Glyma.03G260000' => 'gma', 'Glyma.09G269800' => 'gma', 'Glyma.10G208700' => 'gma', 'Glyma.18G220400' => 'gma', 'Glyma.20G182000' => 'gma', 'Gohir.A01G221726' => 'ghi', 'Gohir.A07G134600' => 'ghi', 'Gohir.A07G146000' => 'ghi', 'Gohir.A08G173900' => 'ghi', 'Gohir.A09G194900' => 'ghi', 'Gohir.A10G204100' => 'ghi', 'Gohir.A11G080600' => 'ghi', 'Gohir.A11G327500' => 'ghi', 'Gohir.A12G101800' => 'ghi', 'Gohir.D01G211200' => 'ghi', 'Gohir.D07G139200' => 'ghi', 'Gohir.D07G152100' => 'ghi', 'Gohir.D08G192600' => 'ghi', 'Gohir.D09G189200' => 'ghi', 'Gohir.D10G212000' => 'ghi', 'Gohir.D11G085200' => 'ghi', 'Gohir.D11G346400' => 'ghi', 'Gohir.D12G104800' => 'ghi', 'Gorai.001G151300' => 'gra', 'Gorai.001G174100' => 'gra', 'Gorai.002G257000' => 'gra', 'Gorai.004G202600' => 'gra', 'Gorai.007G090900' => 'gra', 'Gorai.007G376700' => 'gra', 'Gorai.008G114100' => 'gra', 'Gorai.011G237900' => 'gra', 'GSVIVG01005450001' => 'vvi', 'GSVIVG01016232001' => 'vvi', 'GSVIVG01026157001' => 'vvi', 'GSVIVG01027419001' => 'vvi', 'GSVIVG01027631001' => 'vvi', 'GSVIVG01034143001' => 'vvi', 'HanXRQChr03g0093921' => 'han', 'HanXRQChr04g0120001' => 'han', 'HanXRQChr04g0122561' => 'han', 'HanXRQChr09g0246851' => 'han', 'HanXRQChr10g0293311' => 'han', 'HanXRQChr13g0425231' => 'han', 'HanXRQChr16g0532571' => 'han', 'Haze_09050' => 'cav', 'Haze_15715' => 'cav', 'Haze_15716' => 'cav', 'Haze_16803' => 'cav', 'Haze_16850' => 'cav', 'Hma1.2p1_0301F.1_g118655' => 'hma', 'Hma1.2p1_0309F.1_g120590' => 'hma', 'Hma1.2p1_0936F.1_g238900' => 'hma', 'Hma1.2p1_3552F.1_g336740' => 'hma', 'HPP92_003520' => 'vpl', 'HPP92_006628' => 'vpl', 'HPP92_006645' => 'vpl', 'HPP92_014669' => 'vpl', 'HPP92_015077' => 'vpl', 'Hund16742' => 'sun', 'Hund17022' => 'sun', 'Lalb_Chr02g0152131' => 'lal', 'Lalb_Chr05g0225371' => 'lal', 'Lalb_Chr07g0189841' => 'lal', 'Lalb_Chr07g0192961' => 'lal', 'Lalb_Chr12g0208221' => 'lal', 'Lalb_Chr13g0291211' => 'lal', 'Lalb_Chr13g0291781' => 'lal', 'Lalb_Chr18g0044651' => 'lal', 'Lalb_Chr21g0313731' => 'lal', 'Lj1g0022533' => 'lja', 'Lj2A18T50' => 'lonja', 'Lj2A92G93' => 'lonja', 'Lj3A965T73' => 'lonja', 'Lj3g0000673' => 'lja', 'Lj3g0002666' => 'lja', 'Lj4g0016985' => 'lja', 'Lj5g0003625' => 'lja', 'Lj7A529G36' => 'lonja', 'Lj9A569T49' => 'lonja', 'Lj9A604T63' => 'lonja', 'Lsat_1_v5_gn_3_132060' => 'lsa', 'Lsat_1_v5_gn_4_68941' => 'lsa', 'Lsat_1_v5_gn_5_95580' => 'lsa', 'Lsat_1_v5_gn_7_161' => 'lsa', 'Lsat_1_v5_gn_7_7041' => 'lsa', 'Lsat_1_v5_gn_9_33481' => 'lsa', 'Lsat_1_v5_gn_9_68260' => 'lsa', 'Manes.01G073100' => 'mes', 'Manes.01G266300' => 'mes', 'Manes.02G033300' => 'mes', 'Manes.05G017900' => 'mes', 'Manes.05G046100' => 'mes', 'Manes.08G080900' => 'mes', 'Manes.10G049400' => 'mes', 'Mapoly0009s0186' => 'mpo', 'Mapoly0036s0118' => 'mpo', 'Mapoly0101s0046' => 'mpo', 'MBI04_g30218_MAGBIO' => 'mbi', 'MBI04_g35564_MAGBIO' => 'mbi', 'MBI12_g34011_MAGBIO' => 'mbi', 'MBI14_g04655_MAGBIO' => 'mbi', 'MCO07G653' => 'mco', 'MCO10G173' => 'mco', 'MD01G1087100' => 'mdo', 'MD01G1104200' => 'mdo', 'MD02G1205100' => 'mdo', 'MD04G1079200' => 'mdo', 'MD04G1131400' => 'mdo', 'MD07G1121600' => 'mdo', 'MD07G1157300' => 'mdo', 'MD07G1171000' => 'mdo', 'MD12G1144500' => 'mdo', 'Medtr1g094610' => 'mtr', 'Medtr4g021795' => 'mtr', 'Medtr4g023760' => 'mtr', 'Medtr7g118050' => 'mtr', 'MELO3C005582.2' => 'cme', 'MELO3C005989.2' => 'cme', 'MELO3C006192.2' => 'cme', 'MELO3C009248.2' => 'cme', 'MELO3C019817.2' => 'cme', 'Migut.B01625' => 'egut', 'Migut.B01915' => 'egut', 'Migut.F01721' => 'egut', 'Migut.J00314' => 'egut', 'MSTRG.20742' => 'ama', 'MSTRG.8134' => 'ama', 'Nitab4.5_0000096g0010' => 'nta', 'Nitab4.5_0000202g0030' => 'nta', 'Nitab4.5_0000216g0370' => 'nta', 'Nitab4.5_0000457g0230' => 'nta', 'Nitab4.5_0001702g0170' => 'nta', 'Nitab4.5_0003607g0010' => 'nta', 'Nitab4.5_0004917g0020' => 'nta', 'Nitab4.5_0007059g0010' => 'nta', 'Nitab4.5_0007184g0010' => 'nta', 'Nitab4.5_0007346g0020' => 'nta', 'Nn1g00410' => 'nnu', 'Nn1g01252' => 'nnu', 'Nn2g11168' => 'nnu', 'Nn2g13403' => 'nnu', 'Nn2g13760' => 'nnu', 'Nn4g26380' => 'nnu', 'Oeu000806.2' => 'oeu', 'Oeu005788.1' => 'oeu', 'Oeu006900.3' => 'oeu', 'Oeu007797.1' => 'oeu', 'Oeu011932.1' => 'oeu', 'Oeu022739.1' => 'oeu', 'Oeu037918.1' => 'oeu', 'Oeu055490.2' => 'oeu', 'Os01g0844400' => 'osa', 'Os02g0819100' => 'osa', 'Os03g0804300' => 'osa', 'Os05g0458000' => 'osa', 'Os07g0467800' => 'osa', 'Os12g0602200' => 'osa', 'Peaxi162Scf00013g03444' => 'pax', 'Peaxi162Scf00094g01120' => 'pax', 'Peaxi162Scf00191g01211' => 'pax', 'Peaxi162Scf00238g01110' => 'pax', 'Peaxi162Scf00330g00719' => 'pax', 'Peaxi162Scf00627g00018' => 'pax', 'PGR031G2686' => 'pgr', 'PGR042G0809' => 'pgr', 'PGR142G0193' => 'pgr', 'PGSC0003DMG400011066' => 'stu', 'PGSC0003DMG400012041' => 'stu', 'PGSC0003DMG400013678' => 'stu', 'PGSC0003DMG400023477' => 'stu', 'PGSC0003DMG400025956' => 'stu', 'PGSC0003DMG401019151' => 'stu', 'Phvul.006G116400' => 'pvu', 'Phvul.007G097300' => 'pvu', 'Phvul.010G015000' => 'pvu', 'Phvul.010G083900' => 'pvu', 'Potri.001G117100' => 'ptr', 'Potri.002G147300' => 'ptr', 'Potri.003G115600' => 'ptr', 'Potri.006G087400' => 'ptr', 'Potri.010G226100' => 'ptr', 'Potri.014G069200' => 'ptr', 'Potri.014G104000' => 'ptr', 'Potri.016G100200' => 'ptr', 'Pp3c10_20450' => 'ppa', 'Pp3c1_42400' => 'ppa', 'Pp3c3_24390' => 'ppa', 'Pp3c3_2860' => 'ppa', 'PRCOL_00003193' => 'pco', 'Prupe.2G144500' => 'ppe', 'Prupe.2G195700' => 'ppe', 'Prupe.2G209800' => 'ppe', 'Prupe.5G080000' => 'ppe', 'Prupe.6G257900' => 'ppe', 'Psat3g001160' => 'psa', 'Psat6g181880' => 'psa', 'Psat7g233720' => 'psa', 'PSO063G7587' => 'pso', 'PSO339G2145' => 'pso', 'PSO339G3369' => 'pso', 'PSO478G2747' => 'pso', 'PSO513G0140' => 'pso', 'PSO782G1614' => 'pso', 'PSO782G4889' => 'pso', 'PSO782G5485' => 'pso', 'PSO801G0241' => 'pso', 'QL07p048854' => 'qlo', 'QL08p046745' => 'qlo', 'QL08p052606' => 'qlo', 'QL08p053414' => 'qlo', 'QL08p054868' => 'qlo', 'RcHm_v2.0_Chr1g0350251' => 'rch', 'RcHm_v2.0_Chr1g0360851' => 'rch', 'RcHm_v2.0_Chr1g0362791' => 'rch', 'RcHm_v2.0_Chr3g0466281' => 'rch', 'RcHm_v2.0_Chr7g0201481' => 'rch', 'Rhsim01G0148600' => 'rsi', 'Rhsim05G0194400' => 'rsi', 'Rhsim07G0000700' => 'rsi', 'Rhsim07G0000800' => 'rsi', 'Rhsim07G0027900' => 'rsi', 'Rhsim09G0149500' => 'rsi', 'RhsimUnG0186900' => 'rsi', 'Sabra01G0089900' => 'sbr', 'Sabra02G0114700' => 'sbr', 'Sabra02G0116300' => 'sbr', 'Sabra03G0080100' => 'sbr', 'Sabra08G0024300' => 'sbr', 'Sabra10G0174300' => 'sbr', 'Sabra14G0048900' => 'sbr', 'Sabra14G0076500' => 'sbr', 'SalBow5G2513' => 'sbo', 'Sc01g0002300' => 'sci', 'Sc01g0004450' => 'sci', 'Sc06g0001680' => 'sci', 'Sc23g0003580' => 'sci', 'Sed0000913' => 'sed', 'Sed0001655' => 'sed', 'Sed0007745' => 'sed', 'Sed0010951' => 'sed', 'Sed0017599' => 'sed', 'Sed0021405' => 'sed', 'Sed0022810' => 'sed', 'SEGI_07099' => 'sgi', 'SEGI_11931' => 'sgi', 'SEGI_13187' => 'sgi', 'SEGI_29958' => 'sgi', 'SEGI_36351' => 'sgi', 'SGA_v2.0_scaffold126G33770' => 'sas', 'SGA_v2.0_scaffold153G37003' => 'sas', 'SGA_v2.0_scaffold2G01359' => 'sas', 'SGA_v2.0_scaffold5G03064' => 'sas', 'SGA_v2.0_scaffold95G28903' => 'sas', 'SHI12701' => 'shi', 'SHI26410' => 'shi', 'SHI38997' => 'shi', 'SHI53759' => 'shi', 'SHI53886' => 'shi', 'SHI54714' => 'shi', 'SMO011G0041' => 'smo', 'SMO146G0251' => 'smo', 'SMO160G0004' => 'smo', 'SMO174G0057' => 'smo', 'SMO244G0089' => 'smo', 'SMO296G0011' => 'smo', 'Solyc01g091280.3' => 'sly', 'Solyc05g047610.3' => 'sly', 'Solyc05g047640.3' => 'sly', 'Solyc05g055630.3' => 'sly', 'Solyc10g018160.2' => 'sly', 'Solyc10g084820.2' => 'sly', 'Solyc10g086565.2' => 'sly', 'Sopen01g037030' => 'spe', 'Sopen05g027920' => 'spe', 'Sopen05g034070' => 'spe', 'Sopen10g007260' => 'spe', 'Sopen10g034260' => 'spe', 'Sopen10g035950' => 'spe', 'Sp3g07710' => 'spa', 'Sp4g27420' => 'spa', 'Sp5g02450' => 'spa', 'Sp6g01280' => 'spa', 'Sp6g38480' => 'spa', 'Sp7g20780' => 'spa', 'TAR374G1413' => 'tar', 'TAR623G1777' => 'tar', 'TAR629G2370' => 'tar', 'TAR633G1759' => 'tar', 'TAR636G3387' => 'tar', 'THA.LOC104802447' => 'tha', 'THA.LOC104813916' => 'tha', 'THA.LOC104816423' => 'tha', 'THA.LOC104817246' => 'tha', 'THA.LOC104825895' => 'tha', 'Thecc.01G335200' => 'tca', 'Thecc.01G377400' => 'tca', 'Thecc.03G262200' => 'tca', 'Thecc.05G036800' => 'tca', 'Thecc.10G080500' => 'tca', 'Thecc.10G080800' => 'tca', 'Thhalv10001560m.g' => 'esa', 'Thhalv10006120m.g' => 'esa', 'Thhalv10014375m.g' => 'esa', 'Thhalv10021264m.g' => 'esa', 'Thhalv10028856m.g' => 'esa', 'TPR.G1914' => 'tpr', 'TPR.G4757' => 'tpr', 'TPR.G5595' => 'tpr', 'TWI14G0952' => 'twi', 'TWI14G1307' => 'twi', 'TWI38G2143' => 'twi', 'TWI59G0826' => 'twi', 'TWI77G0527' => 'twi', 'TWI81G0150' => 'twi', 'unitig_21.g21018' => 'ugi', 'unitig_26.g9725' => 'ugi', 'unitig_744.g24653' => 'ugi', 'unitig_749.g13778' => 'ugi', 'unitig_899.g15035' => 'ugi', 'vmacro04296' => 'vma', 'vmacro04852' => 'vma', 'vmacro13404' => 'vma', 'vmacro20169' => 'vma', 'vmacro21014' => 'vma', 'VMungo0331G0237' => 'vmu', 'VMungo0331G0706' => 'vmu', 'VMungo0331G1361' => 'vmu', 'VMungo0331G1489' => 'vmu', 'VMungo0540G1037' => 'vmu', 'VMungo0720G2487' => 'vmu', 'VMungo0720G2721' => 'vmu', 'Zm00001eb086860' => 'zma', 'Zm00001eb104760' => 'zma', 'Zm00001eb148220' => 'zma', 'Zm00001eb259030' => 'zma', 'Zm00001eb289590' => 'zma', 'Zm00001eb420150' => 'zma' ), 'gf_id' => 'HOM05D000968', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000968' ), 'data_identifier' => 'HOM05D000968', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000968', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p31690' => 'bna', 'A03p36040' => 'bna', 'A03p53730' => 'bna', 'A04p01410' => 'bna', 'A05p05420' => 'bna', 'A05p39630' => 'bna', 'A05p39640' => 'bna', 'A09p00970' => 'bna', 'A09p53060' => 'bna', 'A10p31890' => 'bna', 'Aa31LG10G15040' => 'aar', 'Aa31LG1G21090' => 'aar', 'Aa31LG1G26900' => 'aar', 'Aa31LG3G1820' => 'aar', 'Aa31LG5G1100' => 'aar', 'Aa31LG6G4740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2265' => 'aag', 'Actinidia07998' => 'ach', 'Actinidia11266' => 'ach', 'Actinidia12682' => 'ach', 'Actinidia26479' => 'ach', 'Actinidia31406' => 'ach', 'Actinidia32437' => 'ach', 'Actinidia38862' => 'ach', 'Ah.05g174230' => 'amhyb', 'Ah.05g179070' => 'amhyb', 'Ah.05g179090' => 'amhyb', 'Ah.12g059950' => 'amhyb', 'AL3G20480' => 'aly', 'AL4G44520' => 'aly', 'AL5G43110' => 'aly', 'AL6G13890' => 'aly', 'AL6G52620' => 'aly', 'AL7G30830' => 'aly', 'Aqoxy1G00899' => 'aox', 'Aqoxy5G04333' => 'aox', 'Aqoxy7G00641' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3IZ0NN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4EF6AW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W9P8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79GA3M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C43NQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFCU6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G95YVJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCHK29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LU1UG8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX91RN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGB4B1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8DA0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9H7JI' => 'arhy', 'AT3G09320' => 'ath', 'AT3G60800' => 'ath', 'AT4G00840' => 'ath', 'AT4G22750' => 'ath', 'AT5G04270' => 'ath', 'ATR0090G003' => 'atr', 'ATR0559G349' => 'atr', 'ATR0680G261' => 'atr', 'ATR0810G048' => 'atr', 'Atru.chr12.831' => 'acertr', 'Atru.chr5.303' => 'acertr', 'Atru.chr5.748' => 'acertr', 'Atru.chr8.1999' => 'acertr', 'Atru.chr9.1436' => 'acertr', 'AUR62004211' => 'cqu', 'AUR62004548' => 'cqu', 'AUR62013637' => 'cqu', 'AUR62022662' => 'cqu', 'AUR62025777' => 'cqu', 'AUR62042386' => 'cqu', 'BcaB01g02310' => 'bca', 'BcaB01g06062' => 'bca', 'BcaB02g08975' => 'bca', 'BcaB02g08980' => 'bca', 'BcaC01g04228' => 'bca', 'BcaC01g06830' => 'bca', 'BcaC02g10186' => 'bca', 'BcaC02g12214' => 'bca', 'BcaC04g24101' => 'bca', 'BcaC05g29520' => 'bca', 'BcaC05g29661' => 'bca', 'BcaC06g32130' => 'bca', 'BcaC06g32131' => 'bca', 'BcaC07g40601' => 'bca', 'BcaC07g42641' => 'bca', 'BcaNung01038' => 'bca', 'BcaNung01676' => 'bca', 'BcaNung02480' => 'bca', 'BcaNung07376' => 'bca', 'BolC3t16146H' => 'bol', 'BolC3t16637H' => 'bol', 'BolC4t22257H' => 'bol', 'BolC4t24728H' => 'bol', 'BolC5t34517H' => 'bol', 'BolC7t45703H' => 'bol', 'BolC8t51166H' => 'bol', 'BolC9t53038H' => 'bol', 'BolC9t60000H' => 'bol', 'BraA01t01345Z' => 'bra', 'BraA01t01346Z' => 'bra', 'BraA01t01348Z' => 'bra', 'BraA03t12347Z' => 'bra', 'BraA03t12775Z' => 'bra', 'BraA03t14439Z' => 'bra', 'BraA04t15860Z' => 'bra', 'BraA05t19511Z' => 'bra', 'BraA05t22746Z' => 'bra', 'BraA09t35767Z' => 'bra', 'BraA09t40732Z' => 'bra', 'BraA10t45233Z' => 'bra', 'C03p38720' => 'bna', 'C03p43680' => 'bna', 'C04p06350' => 'bna', 'C04p31800' => 'bna', 'C05p58680' => 'bna', 'C07p52110' => 'bna', 'C08p35760' => 'bna', 'C09p01050' => 'bna', 'C09p72600' => 'bna', 'CAN.G106.2' => 'can', 'CAN.G1482.1' => 'can', 'CAN.G324.12' => 'can', 'CAN.G388.20' => 'can', 'CAN.G412.7' => 'can', 'CAN.G694.32' => 'can', 'CAN.G92.12' => 'can', 'CANSAT11G2353' => 'cansat', 'CANSAT21G1398' => 'cansat', 'CANSAT56G2456' => 'cansat', 'CANSAT56G3031' => 'cansat', 'CANSAT56G4539' => 'cansat', 'CARHR083680' => 'chi', 'CARHR171190' => 'chi', 'CARHR209010' => 'chi', 'CARHR229680' => 'chi', 'CARHR249490' => 'chi', 'Carub.0003s0844' => 'cru', 'Carub.0005s2755' => 'cru', 'Carub.0006s0322' => 'cru', 'Carub.0006s3586' => 'cru', 'Carub.0007s1855' => 'cru', 'Ca_07808_v3' => 'car', 'Ca_09535_v3' => 'car', 'Ca_10548_v3' => 'car', 'Ca_19913_v3' => 'car', 'Ca_19916_v3' => 'car', 'Ca_19975_v3' => 'car', 'CBR_g22876' => 'cbr', 'CBR_g22879' => 'cbr', 'CBR_g38491' => 'cbr', 'CBR_g54185' => 'cbr', 'CBR_g54190' => 'cbr', 'Cc02_g11020' => 'ccan', 'Cc02_g23920' => 'ccan', 'Cc02_g39860' => 'ccan', 'Cc02_g39870' => 'ccan', 'Cc03_g06760' => 'ccan', 'Cc06_g02450' => 'ccan', 'Cc09_g09450' => 'ccan', 'CDE02G1959' => 'cde', 'CDE04G0600' => 'cde', 'CDE07G1996' => 'cde', 'CDE07G2078' => 'cde', 'CDE11G0611' => 'cde', 'Cfa001683' => 'cfa', 'Cfa001734' => 'cfa', 'Cfa001737' => 'cfa', 'Cfa003751' => 'cfa', 'Cfa012019' => 'cfa', 'Cfa017353' => 'cfa', 'Cfa017732' => 'cfa', 'Cfa022464' => 'cfa', 'Ciclev10012400m.g' => 'ccl', 'Ciclev10021242m.g' => 'ccl', 'Ciclev10021302m.g' => 'ccl', 'Ciclev10021463m.g' => 'ccl', 'Ciclev10032359m.g' => 'ccl', 'CiPaw.01G081000' => 'cil', 'CiPaw.01G262500' => 'cil', 'CiPaw.01G269800' => 'cil', 'CiPaw.02G168400' => 'cil', 'CiPaw.05G119500' => 'cil', 'CiPaw.11G147300' => 'cil', 'ClCG01G003630' => 'cla', 'ClCG05G000510' => 'cla', 'ClCG05G002300' => 'cla', 'ClCG08G007650' => 'cla', 'ClCG10G021250' => 'cla', 'COL.COLO4_06218' => 'col', 'COL.COLO4_12538' => 'col', 'COL.COLO4_14775' => 'col', 'COL.COLO4_23875' => 'col', 'Cpa.g.sc141.16' => 'cpa', 'Cpa.g.sc169.16' => 'cpa', 'Cpa.g.sc244.4' => 'cpa', 'Cpa.g.sc244.5' => 'cpa', 'Cpa.g.sc29.87' => 'cpa', 'Cpa.g.sc53.115' => 'cpa', 'Cre03.g207502' => 'cre', 'Cre06.g277000' => 'cre', 'Cre09.g394050' => 'cre', 'CsaV3_3G007680' => 'csa', 'CsaV3_3G009710' => 'csa', 'CsaV3_3G034790' => 'csa', 'CsaV3_5G003750' => 'csa', 'CsaV3_6G036620' => 'csa', 'CSS0002288' => 'camsi', 'CSS0011250' => 'camsi', 'CSS0021619' => 'camsi', 'CSS0046701' => 'camsi', 'DCAR_006420' => 'dca', 'DCAR_006865' => 'dca', 'DCAR_008558' => 'dca', 'DCAR_028754' => 'dca', 'DCAR_028755' => 'dca', 'Dinv31218' => 'din', 'Dinv32371' => 'din', 'Dinv34250' => 'din', 'Dinv37156' => 'din', 'Dinv43704' => 'din', 'Duzib093G1811' => 'dzi', 'Duzib106G1622' => 'dzi', 'Duzib114G0504' => 'dzi', 'Duzib128G0338' => 'dzi', 'Duzib128G1577' => 'dzi', 'Duzib133G0104' => 'dzi', 'Duzib133G1080' => 'dzi', 'Duzib138G0324' => 'dzi', 'Duzib138G0394' => 'dzi', 'Duzib205G0122' => 'dzi', 'Duzib268G1020' => 'dzi', 'Duzib268G1359' => 'dzi', 'ECA232G3929' => 'eca', 'ECA236G2210' => 'eca', 'ECA236G2287' => 'eca', 'ECA240G4568' => 'eca', 'ECA247G0894' => 'eca', 'EL10Ac1g00200' => 'bvu', 'EL10Ac1g00886' => 'bvu', 'EL10As1g23091' => 'bvu', 'EL10As1g23092' => 'bvu', 'Eucgr.A01284' => 'egr', 'Eucgr.A01285' => 'egr', 'Eucgr.D02456' => 'egr', 'Eucgr.E00018' => 'egr', 'Eucgr.E01439' => 'egr', 'Eucgr.G02859' => 'egr', 'FAN01G0168' => 'fan', 'FAN01G0453' => 'fan', 'FAN01G2761' => 'fan', 'FAN02G1239' => 'fan', 'FAN03G0645' => 'fan', 'FAN03G2707' => 'fan', 'FAN03G2978' => 'fan', 'FAN04G0227' => 'fan', 'FAN06G0091' => 'fan', 'FAN06G1418' => 'fan', 'FAN06G1512' => 'fan', 'FAN06G1986' => 'fan', 'FAN06G2905' => 'fan', 'FAN06G4325' => 'fan', 'FAN08G0033' => 'fan', 'FAN09G0642' => 'fan', 'FAN10G1763' => 'fan', 'FAN10G2026' => 'fan', 'FAN10G2513' => 'fan', 'FAN10G3402' => 'fan', 'FAN10G3564' => 'fan', 'FAN10G3987' => 'fan', 'FAN13G1490' => 'fan', 'FAN14G5857' => 'fan', 'FAN18G1188' => 'fan', 'FvH4_5g00750' => 'fve', 'FvH4_6g13410' => 'fve', 'FvH4_7g11740' => 'fve', 'FvH4_7g17410' => 'fve', 'FvH4_7g18860' => 'fve', 'Glyma.01G099100' => 'gma', 'Glyma.01G142300' => 'gma', 'Glyma.03G025500' => 'gma', 'Glyma.03G069700' => 'gma', 'Glyma.03G260000' => 'gma', 'Glyma.09G269800' => 'gma', 'Glyma.10G208700' => 'gma', 'Glyma.18G220400' => 'gma', 'Glyma.20G182000' => 'gma', 'Gohir.A01G221726' => 'ghi', 'Gohir.A07G134600' => 'ghi', 'Gohir.A07G146000' => 'ghi', 'Gohir.A08G173900' => 'ghi', 'Gohir.A09G194900' => 'ghi', 'Gohir.A10G204100' => 'ghi', 'Gohir.A11G080600' => 'ghi', 'Gohir.A11G327500' => 'ghi', 'Gohir.A12G101800' => 'ghi', 'Gohir.D01G211200' => 'ghi', 'Gohir.D07G139200' => 'ghi', 'Gohir.D07G152100' => 'ghi', 'Gohir.D08G192600' => 'ghi', 'Gohir.D09G189200' => 'ghi', 'Gohir.D10G212000' => 'ghi', 'Gohir.D11G085200' => 'ghi', 'Gohir.D11G346400' => 'ghi', 'Gohir.D12G104800' => 'ghi', 'Gorai.001G151300' => 'gra', 'Gorai.001G174100' => 'gra', 'Gorai.002G257000' => 'gra', 'Gorai.004G202600' => 'gra', 'Gorai.007G090900' => 'gra', 'Gorai.007G376700' => 'gra', 'Gorai.008G114100' => 'gra', 'Gorai.011G237900' => 'gra', 'GSVIVG01005450001' => 'vvi', 'GSVIVG01016232001' => 'vvi', 'GSVIVG01026157001' => 'vvi', 'GSVIVG01027419001' => 'vvi', 'GSVIVG01027631001' => 'vvi', 'GSVIVG01034143001' => 'vvi', 'HanXRQChr03g0093921' => 'han', 'HanXRQChr04g0120001' => 'han', 'HanXRQChr04g0122561' => 'han', 'HanXRQChr09g0246851' => 'han', 'HanXRQChr10g0293311' => 'han', 'HanXRQChr13g0425231' => 'han', 'HanXRQChr16g0532571' => 'han', 'Haze_09050' => 'cav', 'Haze_15715' => 'cav', 'Haze_15716' => 'cav', 'Haze_16803' => 'cav', 'Haze_16850' => 'cav', 'Hma1.2p1_0301F.1_g118655' => 'hma', 'Hma1.2p1_0309F.1_g120590' => 'hma', 'Hma1.2p1_0936F.1_g238900' => 'hma', 'Hma1.2p1_3552F.1_g336740' => 'hma', 'HPP92_003520' => 'vpl', 'HPP92_006628' => 'vpl', 'HPP92_006645' => 'vpl', 'HPP92_014669' => 'vpl', 'HPP92_015077' => 'vpl', 'Hund16742' => 'sun', 'Hund17022' => 'sun', 'Lalb_Chr02g0152131' => 'lal', 'Lalb_Chr05g0225371' => 'lal', 'Lalb_Chr07g0189841' => 'lal', 'Lalb_Chr07g0192961' => 'lal', 'Lalb_Chr12g0208221' => 'lal', 'Lalb_Chr13g0291211' => 'lal', 'Lalb_Chr13g0291781' => 'lal', 'Lalb_Chr18g0044651' => 'lal', 'Lalb_Chr21g0313731' => 'lal', 'Lj1g0022533' => 'lja', 'Lj2A18T50' => 'lonja', 'Lj2A92G93' => 'lonja', 'Lj3A965T73' => 'lonja', 'Lj3g0000673' => 'lja', 'Lj3g0002666' => 'lja', 'Lj4g0016985' => 'lja', 'Lj5g0003625' => 'lja', 'Lj7A529G36' => 'lonja', 'Lj9A569T49' => 'lonja', 'Lj9A604T63' => 'lonja', 'Lsat_1_v5_gn_3_132060' => 'lsa', 'Lsat_1_v5_gn_4_68941' => 'lsa', 'Lsat_1_v5_gn_5_95580' => 'lsa', 'Lsat_1_v5_gn_7_161' => 'lsa', 'Lsat_1_v5_gn_7_7041' => 'lsa', 'Lsat_1_v5_gn_9_33481' => 'lsa', 'Lsat_1_v5_gn_9_68260' => 'lsa', 'Manes.01G073100' => 'mes', 'Manes.01G266300' => 'mes', 'Manes.02G033300' => 'mes', 'Manes.05G017900' => 'mes', 'Manes.05G046100' => 'mes', 'Manes.08G080900' => 'mes', 'Manes.10G049400' => 'mes', 'Mapoly0009s0186' => 'mpo', 'Mapoly0036s0118' => 'mpo', 'Mapoly0101s0046' => 'mpo', 'MBI04_g30218_MAGBIO' => 'mbi', 'MBI04_g35564_MAGBIO' => 'mbi', 'MBI12_g34011_MAGBIO' => 'mbi', 'MBI14_g04655_MAGBIO' => 'mbi', 'MCO07G653' => 'mco', 'MCO10G173' => 'mco', 'MD01G1087100' => 'mdo', 'MD01G1104200' => 'mdo', 'MD02G1205100' => 'mdo', 'MD04G1079200' => 'mdo', 'MD04G1131400' => 'mdo', 'MD07G1121600' => 'mdo', 'MD07G1157300' => 'mdo', 'MD07G1171000' => 'mdo', 'MD12G1144500' => 'mdo', 'Medtr1g094610' => 'mtr', 'Medtr4g021795' => 'mtr', 'Medtr4g023760' => 'mtr', 'Medtr7g118050' => 'mtr', 'MELO3C005582.2' => 'cme', 'MELO3C005989.2' => 'cme', 'MELO3C006192.2' => 'cme', 'MELO3C009248.2' => 'cme', 'MELO3C019817.2' => 'cme', 'Migut.B01625' => 'egut', 'Migut.B01915' => 'egut', 'Migut.F01721' => 'egut', 'Migut.J00314' => 'egut', 'MSTRG.20742' => 'ama', 'MSTRG.8134' => 'ama', 'Nitab4.5_0000096g0010' => 'nta', 'Nitab4.5_0000202g0030' => 'nta', 'Nitab4.5_0000216g0370' => 'nta', 'Nitab4.5_0000457g0230' => 'nta', 'Nitab4.5_0001702g0170' => 'nta', 'Nitab4.5_0003607g0010' => 'nta', 'Nitab4.5_0004917g0020' => 'nta', 'Nitab4.5_0007059g0010' => 'nta', 'Nitab4.5_0007184g0010' => 'nta', 'Nitab4.5_0007346g0020' => 'nta', 'Nn1g00410' => 'nnu', 'Nn1g01252' => 'nnu', 'Nn2g11168' => 'nnu', 'Nn2g13403' => 'nnu', 'Nn2g13760' => 'nnu', 'Nn4g26380' => 'nnu', 'Oeu000806.2' => 'oeu', 'Oeu005788.1' => 'oeu', 'Oeu006900.3' => 'oeu', 'Oeu007797.1' => 'oeu', 'Oeu011932.1' => 'oeu', 'Oeu022739.1' => 'oeu', 'Oeu037918.1' => 'oeu', 'Oeu055490.2' => 'oeu', 'Os01g0844400' => 'osa', 'Os02g0819100' => 'osa', 'Os03g0804300' => 'osa', 'Os05g0458000' => 'osa', 'Os07g0467800' => 'osa', 'Os12g0602200' => 'osa', 'Peaxi162Scf00013g03444' => 'pax', 'Peaxi162Scf00094g01120' => 'pax', 'Peaxi162Scf00191g01211' => 'pax', 'Peaxi162Scf00238g01110' => 'pax', 'Peaxi162Scf00330g00719' => 'pax', 'Peaxi162Scf00627g00018' => 'pax', 'PGR031G2686' => 'pgr', 'PGR042G0809' => 'pgr', 'PGR142G0193' => 'pgr', 'PGSC0003DMG400011066' => 'stu', 'PGSC0003DMG400012041' => 'stu', 'PGSC0003DMG400013678' => 'stu', 'PGSC0003DMG400023477' => 'stu', 'PGSC0003DMG400025956' => 'stu', 'PGSC0003DMG401019151' => 'stu', 'Phvul.006G116400' => 'pvu', 'Phvul.007G097300' => 'pvu', 'Phvul.010G015000' => 'pvu', 'Phvul.010G083900' => 'pvu', 'Potri.001G117100' => 'ptr', 'Potri.002G147300' => 'ptr', 'Potri.003G115600' => 'ptr', 'Potri.006G087400' => 'ptr', 'Potri.010G226100' => 'ptr', 'Potri.014G069200' => 'ptr', 'Potri.014G104000' => 'ptr', 'Potri.016G100200' => 'ptr', 'Pp3c10_20450' => 'ppa', 'Pp3c1_42400' => 'ppa', 'Pp3c3_24390' => 'ppa', 'Pp3c3_2860' => 'ppa', 'PRCOL_00003193' => 'pco', 'Prupe.2G144500' => 'ppe', 'Prupe.2G195700' => 'ppe', 'Prupe.2G209800' => 'ppe', 'Prupe.5G080000' => 'ppe', 'Prupe.6G257900' => 'ppe', 'Psat3g001160' => 'psa', 'Psat6g181880' => 'psa', 'Psat7g233720' => 'psa', 'PSO063G7587' => 'pso', 'PSO339G2145' => 'pso', 'PSO339G3369' => 'pso', 'PSO478G2747' => 'pso', 'PSO513G0140' => 'pso', 'PSO782G1614' => 'pso', 'PSO782G4889' => 'pso', 'PSO782G5485' => 'pso', 'PSO801G0241' => 'pso', 'QL07p048854' => 'qlo', 'QL08p046745' => 'qlo', 'QL08p052606' => 'qlo', 'QL08p053414' => 'qlo', 'QL08p054868' => 'qlo', 'RcHm_v2.0_Chr1g0350251' => 'rch', 'RcHm_v2.0_Chr1g0360851' => 'rch', 'RcHm_v2.0_Chr1g0362791' => 'rch', 'RcHm_v2.0_Chr3g0466281' => 'rch', 'RcHm_v2.0_Chr7g0201481' => 'rch', 'Rhsim01G0148600' => 'rsi', 'Rhsim05G0194400' => 'rsi', 'Rhsim07G0000700' => 'rsi', 'Rhsim07G0000800' => 'rsi', 'Rhsim07G0027900' => 'rsi', 'Rhsim09G0149500' => 'rsi', 'RhsimUnG0186900' => 'rsi', 'Sabra01G0089900' => 'sbr', 'Sabra02G0114700' => 'sbr', 'Sabra02G0116300' => 'sbr', 'Sabra03G0080100' => 'sbr', 'Sabra08G0024300' => 'sbr', 'Sabra10G0174300' => 'sbr', 'Sabra14G0048900' => 'sbr', 'Sabra14G0076500' => 'sbr', 'SalBow5G2513' => 'sbo', 'Sc01g0002300' => 'sci', 'Sc01g0004450' => 'sci', 'Sc06g0001680' => 'sci', 'Sc23g0003580' => 'sci', 'Sed0000913' => 'sed', 'Sed0001655' => 'sed', 'Sed0007745' => 'sed', 'Sed0010951' => 'sed', 'Sed0017599' => 'sed', 'Sed0021405' => 'sed', 'Sed0022810' => 'sed', 'SEGI_07099' => 'sgi', 'SEGI_11931' => 'sgi', 'SEGI_13187' => 'sgi', 'SEGI_29958' => 'sgi', 'SEGI_36351' => 'sgi', 'SGA_v2.0_scaffold126G33770' => 'sas', 'SGA_v2.0_scaffold153G37003' => 'sas', 'SGA_v2.0_scaffold2G01359' => 'sas', 'SGA_v2.0_scaffold5G03064' => 'sas', 'SGA_v2.0_scaffold95G28903' => 'sas', 'SHI12701' => 'shi', 'SHI26410' => 'shi', 'SHI38997' => 'shi', 'SHI53759' => 'shi', 'SHI53886' => 'shi', 'SHI54714' => 'shi', 'SMO011G0041' => 'smo', 'SMO146G0251' => 'smo', 'SMO160G0004' => 'smo', 'SMO174G0057' => 'smo', 'SMO244G0089' => 'smo', 'SMO296G0011' => 'smo', 'Solyc01g091280.3' => 'sly', 'Solyc05g047610.3' => 'sly', 'Solyc05g047640.3' => 'sly', 'Solyc05g055630.3' => 'sly', 'Solyc10g018160.2' => 'sly', 'Solyc10g084820.2' => 'sly', 'Solyc10g086565.2' => 'sly', 'Sopen01g037030' => 'spe', 'Sopen05g027920' => 'spe', 'Sopen05g034070' => 'spe', 'Sopen10g007260' => 'spe', 'Sopen10g034260' => 'spe', 'Sopen10g035950' => 'spe', 'Sp3g07710' => 'spa', 'Sp4g27420' => 'spa', 'Sp5g02450' => 'spa', 'Sp6g01280' => 'spa', 'Sp6g38480' => 'spa', 'Sp7g20780' => 'spa', 'TAR374G1413' => 'tar', 'TAR623G1777' => 'tar', 'TAR629G2370' => 'tar', 'TAR633G1759' => 'tar', 'TAR636G3387' => 'tar', 'THA.LOC104802447' => 'tha', 'THA.LOC104813916' => 'tha', 'THA.LOC104816423' => 'tha', 'THA.LOC104817246' => 'tha', 'THA.LOC104825895' => 'tha', 'Thecc.01G335200' => 'tca', 'Thecc.01G377400' => 'tca', 'Thecc.03G262200' => 'tca', 'Thecc.05G036800' => 'tca', 'Thecc.10G080500' => 'tca', 'Thecc.10G080800' => 'tca', 'Thhalv10001560m.g' => 'esa', 'Thhalv10006120m.g' => 'esa', 'Thhalv10014375m.g' => 'esa', 'Thhalv10021264m.g' => 'esa', 'Thhalv10028856m.g' => 'esa', 'TPR.G1914' => 'tpr', 'TPR.G4757' => 'tpr', 'TPR.G5595' => 'tpr', 'TWI14G0952' => 'twi', 'TWI14G1307' => 'twi', 'TWI38G2143' => 'twi', 'TWI59G0826' => 'twi', 'TWI77G0527' => 'twi', 'TWI81G0150' => 'twi', 'unitig_21.g21018' => 'ugi', 'unitig_26.g9725' => 'ugi', 'unitig_744.g24653' => 'ugi', 'unitig_749.g13778' => 'ugi', 'unitig_899.g15035' => 'ugi', 'vmacro04296' => 'vma', 'vmacro04852' => 'vma', 'vmacro13404' => 'vma', 'vmacro20169' => 'vma', 'vmacro21014' => 'vma', 'VMungo0331G0237' => 'vmu', 'VMungo0331G0706' => 'vmu', 'VMungo0331G1361' => 'vmu', 'VMungo0331G1489' => 'vmu', 'VMungo0540G1037' => 'vmu', 'VMungo0720G2487' => 'vmu', 'VMungo0720G2721' => 'vmu', 'Zm00001eb086860' => 'zma', 'Zm00001eb104760' => 'zma', 'Zm00001eb148220' => 'zma', 'Zm00001eb259030' => 'zma', 'Zm00001eb289590' => 'zma', 'Zm00001eb420150' => 'zma' ) $gf_id = 'HOM05D000968' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000968' ) $data_identifier = 'HOM05D000968' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 19, 'bol' => (int) 9, 'bra' => (int) 12, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 5, 'ccan' => (int) 7, 'cde' => (int) 5, 'cfa' => (int) 8, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 4, 'dca' => (int) 5, 'din' => (int) 5, 'dzi' => (int) 12, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 25, 'fve' => (int) 5, 'gma' => (int) 9, 'ghi' => (int) 18, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 7, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 5, 'sun' => (int) 2, 'lal' => (int) 9, 'lja' => (int) 5, 'lonja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 9, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 2, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 3, 'stu' => (int) 6, 'pvu' => (int) 4, 'ptr' => (int) 8, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 3, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 1, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 5, 'sas' => (int) 5, 'shi' => (int) 6, 'smo' => (int) 6, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 3, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420150' $species_info = array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ) $local_species = 'pax' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000968', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p31690' => 'bna', 'A03p36040' => 'bna', 'A03p53730' => 'bna', 'A04p01410' => 'bna', 'A05p05420' => 'bna', 'A05p39630' => 'bna', 'A05p39640' => 'bna', 'A09p00970' => 'bna', 'A09p53060' => 'bna', 'A10p31890' => 'bna', 'Aa31LG10G15040' => 'aar', 'Aa31LG1G21090' => 'aar', 'Aa31LG1G26900' => 'aar', 'Aa31LG3G1820' => 'aar', 'Aa31LG5G1100' => 'aar', 'Aa31LG6G4740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2265' => 'aag', 'Actinidia07998' => 'ach', 'Actinidia11266' => 'ach', 'Actinidia12682' => 'ach', 'Actinidia26479' => 'ach', 'Actinidia31406' => 'ach', 'Actinidia32437' => 'ach', 'Actinidia38862' => 'ach', 'Ah.05g174230' => 'amhyb', 'Ah.05g179070' => 'amhyb', 'Ah.05g179090' => 'amhyb', 'Ah.12g059950' => 'amhyb', 'AL3G20480' => 'aly', 'AL4G44520' => 'aly', 'AL5G43110' => 'aly', 'AL6G13890' => 'aly', 'AL6G52620' => 'aly', 'AL7G30830' => 'aly', 'Aqoxy1G00899' => 'aox', 'Aqoxy5G04333' => 'aox', 'Aqoxy7G00641' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3IZ0NN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4EF6AW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W9P8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79GA3M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C43NQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFCU6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G95YVJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCHK29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LU1UG8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX91RN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGB4B1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8DA0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9H7JI' => 'arhy', 'AT3G09320' => 'ath', 'AT3G60800' => 'ath', 'AT4G00840' => 'ath', 'AT4G22750' => 'ath', 'AT5G04270' => 'ath', 'ATR0090G003' => 'atr', 'ATR0559G349' => 'atr', 'ATR0680G261' => 'atr', 'ATR0810G048' => 'atr', 'Atru.chr12.831' => 'acertr', 'Atru.chr5.303' => 'acertr', 'Atru.chr5.748' => 'acertr', 'Atru.chr8.1999' => 'acertr', 'Atru.chr9.1436' => 'acertr', 'AUR62004211' => 'cqu', 'AUR62004548' => 'cqu', 'AUR62013637' => 'cqu', 'AUR62022662' => 'cqu', 'AUR62025777' => 'cqu', 'AUR62042386' => 'cqu', 'BcaB01g02310' => 'bca', 'BcaB01g06062' => 'bca', 'BcaB02g08975' => 'bca', 'BcaB02g08980' => 'bca', 'BcaC01g04228' => 'bca', 'BcaC01g06830' => 'bca', 'BcaC02g10186' => 'bca', 'BcaC02g12214' => 'bca', 'BcaC04g24101' => 'bca', 'BcaC05g29520' => 'bca', 'BcaC05g29661' => 'bca', 'BcaC06g32130' => 'bca', 'BcaC06g32131' => 'bca', 'BcaC07g40601' => 'bca', 'BcaC07g42641' => 'bca', 'BcaNung01038' => 'bca', 'BcaNung01676' => 'bca', 'BcaNung02480' => 'bca', 'BcaNung07376' => 'bca', 'BolC3t16146H' => 'bol', 'BolC3t16637H' => 'bol', 'BolC4t22257H' => 'bol', 'BolC4t24728H' => 'bol', 'BolC5t34517H' => 'bol', 'BolC7t45703H' => 'bol', 'BolC8t51166H' => 'bol', 'BolC9t53038H' => 'bol', 'BolC9t60000H' => 'bol', 'BraA01t01345Z' => 'bra', 'BraA01t01346Z' => 'bra', 'BraA01t01348Z' => 'bra', 'BraA03t12347Z' => 'bra', 'BraA03t12775Z' => 'bra', 'BraA03t14439Z' => 'bra', 'BraA04t15860Z' => 'bra', 'BraA05t19511Z' => 'bra', 'BraA05t22746Z' => 'bra', 'BraA09t35767Z' => 'bra', 'BraA09t40732Z' => 'bra', 'BraA10t45233Z' => 'bra', 'C03p38720' => 'bna', 'C03p43680' => 'bna', 'C04p06350' => 'bna', 'C04p31800' => 'bna', 'C05p58680' => 'bna', 'C07p52110' => 'bna', 'C08p35760' => 'bna', 'C09p01050' => 'bna', 'C09p72600' => 'bna', 'CAN.G106.2' => 'can', 'CAN.G1482.1' => 'can', 'CAN.G324.12' => 'can', 'CAN.G388.20' => 'can', 'CAN.G412.7' => 'can', 'CAN.G694.32' => 'can', 'CAN.G92.12' => 'can', 'CANSAT11G2353' => 'cansat', 'CANSAT21G1398' => 'cansat', 'CANSAT56G2456' => 'cansat', 'CANSAT56G3031' => 'cansat', 'CANSAT56G4539' => 'cansat', 'CARHR083680' => 'chi', 'CARHR171190' => 'chi', 'CARHR209010' => 'chi', 'CARHR229680' => 'chi', 'CARHR249490' => 'chi', 'Carub.0003s0844' => 'cru', 'Carub.0005s2755' => 'cru', 'Carub.0006s0322' => 'cru', 'Carub.0006s3586' => 'cru', 'Carub.0007s1855' => 'cru', 'Ca_07808_v3' => 'car', 'Ca_09535_v3' => 'car', 'Ca_10548_v3' => 'car', 'Ca_19913_v3' => 'car', 'Ca_19916_v3' => 'car', 'Ca_19975_v3' => 'car', 'CBR_g22876' => 'cbr', 'CBR_g22879' => 'cbr', 'CBR_g38491' => 'cbr', 'CBR_g54185' => 'cbr', 'CBR_g54190' => 'cbr', 'Cc02_g11020' => 'ccan', 'Cc02_g23920' => 'ccan', 'Cc02_g39860' => 'ccan', 'Cc02_g39870' => 'ccan', 'Cc03_g06760' => 'ccan', 'Cc06_g02450' => 'ccan', 'Cc09_g09450' => 'ccan', 'CDE02G1959' => 'cde', 'CDE04G0600' => 'cde', 'CDE07G1996' => 'cde', 'CDE07G2078' => 'cde', 'CDE11G0611' => 'cde', 'Cfa001683' => 'cfa', 'Cfa001734' => 'cfa', 'Cfa001737' => 'cfa', 'Cfa003751' => 'cfa', 'Cfa012019' => 'cfa', 'Cfa017353' => 'cfa', 'Cfa017732' => 'cfa', 'Cfa022464' => 'cfa', 'Ciclev10012400m.g' => 'ccl', 'Ciclev10021242m.g' => 'ccl', 'Ciclev10021302m.g' => 'ccl', 'Ciclev10021463m.g' => 'ccl', 'Ciclev10032359m.g' => 'ccl', 'CiPaw.01G081000' => 'cil', 'CiPaw.01G262500' => 'cil', 'CiPaw.01G269800' => 'cil', 'CiPaw.02G168400' => 'cil', 'CiPaw.05G119500' => 'cil', 'CiPaw.11G147300' => 'cil', 'ClCG01G003630' => 'cla', 'ClCG05G000510' => 'cla', 'ClCG05G002300' => 'cla', 'ClCG08G007650' => 'cla', 'ClCG10G021250' => 'cla', 'COL.COLO4_06218' => 'col', 'COL.COLO4_12538' => 'col', 'COL.COLO4_14775' => 'col', 'COL.COLO4_23875' => 'col', 'Cpa.g.sc141.16' => 'cpa', 'Cpa.g.sc169.16' => 'cpa', 'Cpa.g.sc244.4' => 'cpa', 'Cpa.g.sc244.5' => 'cpa', 'Cpa.g.sc29.87' => 'cpa', 'Cpa.g.sc53.115' => 'cpa', 'Cre03.g207502' => 'cre', 'Cre06.g277000' => 'cre', 'Cre09.g394050' => 'cre', 'CsaV3_3G007680' => 'csa', 'CsaV3_3G009710' => 'csa', 'CsaV3_3G034790' => 'csa', 'CsaV3_5G003750' => 'csa', 'CsaV3_6G036620' => 'csa', 'CSS0002288' => 'camsi', 'CSS0011250' => 'camsi', 'CSS0021619' => 'camsi', 'CSS0046701' => 'camsi', 'DCAR_006420' => 'dca', 'DCAR_006865' => 'dca', 'DCAR_008558' => 'dca', 'DCAR_028754' => 'dca', 'DCAR_028755' => 'dca', 'Dinv31218' => 'din', 'Dinv32371' => 'din', 'Dinv34250' => 'din', 'Dinv37156' => 'din', 'Dinv43704' => 'din', 'Duzib093G1811' => 'dzi', 'Duzib106G1622' => 'dzi', 'Duzib114G0504' => 'dzi', 'Duzib128G0338' => 'dzi', 'Duzib128G1577' => 'dzi', 'Duzib133G0104' => 'dzi', 'Duzib133G1080' => 'dzi', 'Duzib138G0324' => 'dzi', 'Duzib138G0394' => 'dzi', 'Duzib205G0122' => 'dzi', 'Duzib268G1020' => 'dzi', 'Duzib268G1359' => 'dzi', 'ECA232G3929' => 'eca', 'ECA236G2210' => 'eca', 'ECA236G2287' => 'eca', 'ECA240G4568' => 'eca', 'ECA247G0894' => 'eca', 'EL10Ac1g00200' => 'bvu', 'EL10Ac1g00886' => 'bvu', 'EL10As1g23091' => 'bvu', 'EL10As1g23092' => 'bvu', 'Eucgr.A01284' => 'egr', 'Eucgr.A01285' => 'egr', 'Eucgr.D02456' => 'egr', 'Eucgr.E00018' => 'egr', 'Eucgr.E01439' => 'egr', 'Eucgr.G02859' => 'egr', 'FAN01G0168' => 'fan', 'FAN01G0453' => 'fan', 'FAN01G2761' => 'fan', 'FAN02G1239' => 'fan', 'FAN03G0645' => 'fan', 'FAN03G2707' => 'fan', 'FAN03G2978' => 'fan', 'FAN04G0227' => 'fan', 'FAN06G0091' => 'fan', 'FAN06G1418' => 'fan', 'FAN06G1512' => 'fan', 'FAN06G1986' => 'fan', 'FAN06G2905' => 'fan', 'FAN06G4325' => 'fan', 'FAN08G0033' => 'fan', 'FAN09G0642' => 'fan', 'FAN10G1763' => 'fan', 'FAN10G2026' => 'fan', 'FAN10G2513' => 'fan', 'FAN10G3402' => 'fan', 'FAN10G3564' => 'fan', 'FAN10G3987' => 'fan', 'FAN13G1490' => 'fan', 'FAN14G5857' => 'fan', 'FAN18G1188' => 'fan', 'FvH4_5g00750' => 'fve', 'FvH4_6g13410' => 'fve', 'FvH4_7g11740' => 'fve', 'FvH4_7g17410' => 'fve', 'FvH4_7g18860' => 'fve', 'Glyma.01G099100' => 'gma', 'Glyma.01G142300' => 'gma', 'Glyma.03G025500' => 'gma', 'Glyma.03G069700' => 'gma', 'Glyma.03G260000' => 'gma', 'Glyma.09G269800' => 'gma', 'Glyma.10G208700' => 'gma', 'Glyma.18G220400' => 'gma', 'Glyma.20G182000' => 'gma', 'Gohir.A01G221726' => 'ghi', 'Gohir.A07G134600' => 'ghi', 'Gohir.A07G146000' => 'ghi', 'Gohir.A08G173900' => 'ghi', 'Gohir.A09G194900' => 'ghi', 'Gohir.A10G204100' => 'ghi', 'Gohir.A11G080600' => 'ghi', 'Gohir.A11G327500' => 'ghi', 'Gohir.A12G101800' => 'ghi', 'Gohir.D01G211200' => 'ghi', 'Gohir.D07G139200' => 'ghi', 'Gohir.D07G152100' => 'ghi', 'Gohir.D08G192600' => 'ghi', 'Gohir.D09G189200' => 'ghi', 'Gohir.D10G212000' => 'ghi', 'Gohir.D11G085200' => 'ghi', 'Gohir.D11G346400' => 'ghi', 'Gohir.D12G104800' => 'ghi', 'Gorai.001G151300' => 'gra', 'Gorai.001G174100' => 'gra', 'Gorai.002G257000' => 'gra', 'Gorai.004G202600' => 'gra', 'Gorai.007G090900' => 'gra', 'Gorai.007G376700' => 'gra', 'Gorai.008G114100' => 'gra', 'Gorai.011G237900' => 'gra', 'GSVIVG01005450001' => 'vvi', 'GSVIVG01016232001' => 'vvi', 'GSVIVG01026157001' => 'vvi', 'GSVIVG01027419001' => 'vvi', 'GSVIVG01027631001' => 'vvi', 'GSVIVG01034143001' => 'vvi', 'HanXRQChr03g0093921' => 'han', 'HanXRQChr04g0120001' => 'han', 'HanXRQChr04g0122561' => 'han', 'HanXRQChr09g0246851' => 'han', 'HanXRQChr10g0293311' => 'han', 'HanXRQChr13g0425231' => 'han', 'HanXRQChr16g0532571' => 'han', 'Haze_09050' => 'cav', 'Haze_15715' => 'cav', 'Haze_15716' => 'cav', 'Haze_16803' => 'cav', 'Haze_16850' => 'cav', 'Hma1.2p1_0301F.1_g118655' => 'hma', 'Hma1.2p1_0309F.1_g120590' => 'hma', 'Hma1.2p1_0936F.1_g238900' => 'hma', 'Hma1.2p1_3552F.1_g336740' => 'hma', 'HPP92_003520' => 'vpl', 'HPP92_006628' => 'vpl', 'HPP92_006645' => 'vpl', 'HPP92_014669' => 'vpl', 'HPP92_015077' => 'vpl', 'Hund16742' => 'sun', 'Hund17022' => 'sun', 'Lalb_Chr02g0152131' => 'lal', 'Lalb_Chr05g0225371' => 'lal', 'Lalb_Chr07g0189841' => 'lal', 'Lalb_Chr07g0192961' => 'lal', 'Lalb_Chr12g0208221' => 'lal', 'Lalb_Chr13g0291211' => 'lal', 'Lalb_Chr13g0291781' => 'lal', 'Lalb_Chr18g0044651' => 'lal', 'Lalb_Chr21g0313731' => 'lal', 'Lj1g0022533' => 'lja', 'Lj2A18T50' => 'lonja', 'Lj2A92G93' => 'lonja', 'Lj3A965T73' => 'lonja', 'Lj3g0000673' => 'lja', 'Lj3g0002666' => 'lja', 'Lj4g0016985' => 'lja', 'Lj5g0003625' => 'lja', 'Lj7A529G36' => 'lonja', 'Lj9A569T49' => 'lonja', 'Lj9A604T63' => 'lonja', 'Lsat_1_v5_gn_3_132060' => 'lsa', 'Lsat_1_v5_gn_4_68941' => 'lsa', 'Lsat_1_v5_gn_5_95580' => 'lsa', 'Lsat_1_v5_gn_7_161' => 'lsa', 'Lsat_1_v5_gn_7_7041' => 'lsa', 'Lsat_1_v5_gn_9_33481' => 'lsa', 'Lsat_1_v5_gn_9_68260' => 'lsa', 'Manes.01G073100' => 'mes', 'Manes.01G266300' => 'mes', 'Manes.02G033300' => 'mes', 'Manes.05G017900' => 'mes', 'Manes.05G046100' => 'mes', 'Manes.08G080900' => 'mes', 'Manes.10G049400' => 'mes', 'Mapoly0009s0186' => 'mpo', 'Mapoly0036s0118' => 'mpo', 'Mapoly0101s0046' => 'mpo', 'MBI04_g30218_MAGBIO' => 'mbi', 'MBI04_g35564_MAGBIO' => 'mbi', 'MBI12_g34011_MAGBIO' => 'mbi', 'MBI14_g04655_MAGBIO' => 'mbi', 'MCO07G653' => 'mco', 'MCO10G173' => 'mco', 'MD01G1087100' => 'mdo', 'MD01G1104200' => 'mdo', 'MD02G1205100' => 'mdo', 'MD04G1079200' => 'mdo', 'MD04G1131400' => 'mdo', 'MD07G1121600' => 'mdo', 'MD07G1157300' => 'mdo', 'MD07G1171000' => 'mdo', 'MD12G1144500' => 'mdo', 'Medtr1g094610' => 'mtr', 'Medtr4g021795' => 'mtr', 'Medtr4g023760' => 'mtr', 'Medtr7g118050' => 'mtr', 'MELO3C005582.2' => 'cme', 'MELO3C005989.2' => 'cme', 'MELO3C006192.2' => 'cme', 'MELO3C009248.2' => 'cme', 'MELO3C019817.2' => 'cme', 'Migut.B01625' => 'egut', 'Migut.B01915' => 'egut', 'Migut.F01721' => 'egut', 'Migut.J00314' => 'egut', 'MSTRG.20742' => 'ama', 'MSTRG.8134' => 'ama', 'Nitab4.5_0000096g0010' => 'nta', 'Nitab4.5_0000202g0030' => 'nta', 'Nitab4.5_0000216g0370' => 'nta', 'Nitab4.5_0000457g0230' => 'nta', 'Nitab4.5_0001702g0170' => 'nta', 'Nitab4.5_0003607g0010' => 'nta', 'Nitab4.5_0004917g0020' => 'nta', 'Nitab4.5_0007059g0010' => 'nta', 'Nitab4.5_0007184g0010' => 'nta', 'Nitab4.5_0007346g0020' => 'nta', 'Nn1g00410' => 'nnu', 'Nn1g01252' => 'nnu', 'Nn2g11168' => 'nnu', 'Nn2g13403' => 'nnu', 'Nn2g13760' => 'nnu', 'Nn4g26380' => 'nnu', 'Oeu000806.2' => 'oeu', 'Oeu005788.1' => 'oeu', 'Oeu006900.3' => 'oeu', 'Oeu007797.1' => 'oeu', 'Oeu011932.1' => 'oeu', 'Oeu022739.1' => 'oeu', 'Oeu037918.1' => 'oeu', 'Oeu055490.2' => 'oeu', 'Os01g0844400' => 'osa', 'Os02g0819100' => 'osa', 'Os03g0804300' => 'osa', 'Os05g0458000' => 'osa', 'Os07g0467800' => 'osa', 'Os12g0602200' => 'osa', 'Peaxi162Scf00013g03444' => 'pax', 'Peaxi162Scf00094g01120' => 'pax', 'Peaxi162Scf00191g01211' => 'pax', 'Peaxi162Scf00238g01110' => 'pax', 'Peaxi162Scf00330g00719' => 'pax', 'Peaxi162Scf00627g00018' => 'pax', 'PGR031G2686' => 'pgr', 'PGR042G0809' => 'pgr', 'PGR142G0193' => 'pgr', 'PGSC0003DMG400011066' => 'stu', 'PGSC0003DMG400012041' => 'stu', 'PGSC0003DMG400013678' => 'stu', 'PGSC0003DMG400023477' => 'stu', 'PGSC0003DMG400025956' => 'stu', 'PGSC0003DMG401019151' => 'stu', 'Phvul.006G116400' => 'pvu', 'Phvul.007G097300' => 'pvu', 'Phvul.010G015000' => 'pvu', 'Phvul.010G083900' => 'pvu', 'Potri.001G117100' => 'ptr', 'Potri.002G147300' => 'ptr', 'Potri.003G115600' => 'ptr', 'Potri.006G087400' => 'ptr', 'Potri.010G226100' => 'ptr', 'Potri.014G069200' => 'ptr', 'Potri.014G104000' => 'ptr', 'Potri.016G100200' => 'ptr', 'Pp3c10_20450' => 'ppa', 'Pp3c1_42400' => 'ppa', 'Pp3c3_24390' => 'ppa', 'Pp3c3_2860' => 'ppa', 'PRCOL_00003193' => 'pco', 'Prupe.2G144500' => 'ppe', 'Prupe.2G195700' => 'ppe', 'Prupe.2G209800' => 'ppe', 'Prupe.5G080000' => 'ppe', 'Prupe.6G257900' => 'ppe', 'Psat3g001160' => 'psa', 'Psat6g181880' => 'psa', 'Psat7g233720' => 'psa', 'PSO063G7587' => 'pso', 'PSO339G2145' => 'pso', 'PSO339G3369' => 'pso', 'PSO478G2747' => 'pso', 'PSO513G0140' => 'pso', 'PSO782G1614' => 'pso', 'PSO782G4889' => 'pso', 'PSO782G5485' => 'pso', 'PSO801G0241' => 'pso', 'QL07p048854' => 'qlo', 'QL08p046745' => 'qlo', 'QL08p052606' => 'qlo', 'QL08p053414' => 'qlo', 'QL08p054868' => 'qlo', 'RcHm_v2.0_Chr1g0350251' => 'rch', 'RcHm_v2.0_Chr1g0360851' => 'rch', 'RcHm_v2.0_Chr1g0362791' => 'rch', 'RcHm_v2.0_Chr3g0466281' => 'rch', 'RcHm_v2.0_Chr7g0201481' => 'rch', 'Rhsim01G0148600' => 'rsi', 'Rhsim05G0194400' => 'rsi', 'Rhsim07G0000700' => 'rsi', 'Rhsim07G0000800' => 'rsi', 'Rhsim07G0027900' => 'rsi', 'Rhsim09G0149500' => 'rsi', 'RhsimUnG0186900' => 'rsi', 'Sabra01G0089900' => 'sbr', 'Sabra02G0114700' => 'sbr', 'Sabra02G0116300' => 'sbr', 'Sabra03G0080100' => 'sbr', 'Sabra08G0024300' => 'sbr', 'Sabra10G0174300' => 'sbr', 'Sabra14G0048900' => 'sbr', 'Sabra14G0076500' => 'sbr', 'SalBow5G2513' => 'sbo', 'Sc01g0002300' => 'sci', 'Sc01g0004450' => 'sci', 'Sc06g0001680' => 'sci', 'Sc23g0003580' => 'sci', 'Sed0000913' => 'sed', 'Sed0001655' => 'sed', 'Sed0007745' => 'sed', 'Sed0010951' => 'sed', 'Sed0017599' => 'sed', 'Sed0021405' => 'sed', 'Sed0022810' => 'sed', 'SEGI_07099' => 'sgi', 'SEGI_11931' => 'sgi', 'SEGI_13187' => 'sgi', 'SEGI_29958' => 'sgi', 'SEGI_36351' => 'sgi', 'SGA_v2.0_scaffold126G33770' => 'sas', 'SGA_v2.0_scaffold153G37003' => 'sas', 'SGA_v2.0_scaffold2G01359' => 'sas', 'SGA_v2.0_scaffold5G03064' => 'sas', 'SGA_v2.0_scaffold95G28903' => 'sas', 'SHI12701' => 'shi', 'SHI26410' => 'shi', 'SHI38997' => 'shi', 'SHI53759' => 'shi', 'SHI53886' => 'shi', 'SHI54714' => 'shi', 'SMO011G0041' => 'smo', 'SMO146G0251' => 'smo', 'SMO160G0004' => 'smo', 'SMO174G0057' => 'smo', 'SMO244G0089' => 'smo', 'SMO296G0011' => 'smo', 'Solyc01g091280.3' => 'sly', 'Solyc05g047610.3' => 'sly', 'Solyc05g047640.3' => 'sly', 'Solyc05g055630.3' => 'sly', 'Solyc10g018160.2' => 'sly', 'Solyc10g084820.2' => 'sly', 'Solyc10g086565.2' => 'sly', 'Sopen01g037030' => 'spe', 'Sopen05g027920' => 'spe', 'Sopen05g034070' => 'spe', 'Sopen10g007260' => 'spe', 'Sopen10g034260' => 'spe', 'Sopen10g035950' => 'spe', 'Sp3g07710' => 'spa', 'Sp4g27420' => 'spa', 'Sp5g02450' => 'spa', 'Sp6g01280' => 'spa', 'Sp6g38480' => 'spa', 'Sp7g20780' => 'spa', 'TAR374G1413' => 'tar', 'TAR623G1777' => 'tar', 'TAR629G2370' => 'tar', 'TAR633G1759' => 'tar', 'TAR636G3387' => 'tar', 'THA.LOC104802447' => 'tha', 'THA.LOC104813916' => 'tha', 'THA.LOC104816423' => 'tha', 'THA.LOC104817246' => 'tha', 'THA.LOC104825895' => 'tha', 'Thecc.01G335200' => 'tca', 'Thecc.01G377400' => 'tca', 'Thecc.03G262200' => 'tca', 'Thecc.05G036800' => 'tca', 'Thecc.10G080500' => 'tca', 'Thecc.10G080800' => 'tca', 'Thhalv10001560m.g' => 'esa', 'Thhalv10006120m.g' => 'esa', 'Thhalv10014375m.g' => 'esa', 'Thhalv10021264m.g' => 'esa', 'Thhalv10028856m.g' => 'esa', 'TPR.G1914' => 'tpr', 'TPR.G4757' => 'tpr', 'TPR.G5595' => 'tpr', 'TWI14G0952' => 'twi', 'TWI14G1307' => 'twi', 'TWI38G2143' => 'twi', 'TWI59G0826' => 'twi', 'TWI77G0527' => 'twi', 'TWI81G0150' => 'twi', 'unitig_21.g21018' => 'ugi', 'unitig_26.g9725' => 'ugi', 'unitig_744.g24653' => 'ugi', 'unitig_749.g13778' => 'ugi', 'unitig_899.g15035' => 'ugi', 'vmacro04296' => 'vma', 'vmacro04852' => 'vma', 'vmacro13404' => 'vma', 'vmacro20169' => 'vma', 'vmacro21014' => 'vma', 'VMungo0331G0237' => 'vmu', 'VMungo0331G0706' => 'vmu', 'VMungo0331G1361' => 'vmu', 'VMungo0331G1489' => 'vmu', 'VMungo0540G1037' => 'vmu', 'VMungo0720G2487' => 'vmu', 'VMungo0720G2721' => 'vmu', 'Zm00001eb086860' => 'zma', 'Zm00001eb104760' => 'zma', 'Zm00001eb148220' => 'zma', 'Zm00001eb259030' => 'zma', 'Zm00001eb289590' => 'zma', 'Zm00001eb420150' => 'zma' ), 'gf_id' => 'HOM05D000968', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000968' ), 'data_identifier' => 'HOM05D000968', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000968', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p31690' => 'bna', 'A03p36040' => 'bna', 'A03p53730' => 'bna', 'A04p01410' => 'bna', 'A05p05420' => 'bna', 'A05p39630' => 'bna', 'A05p39640' => 'bna', 'A09p00970' => 'bna', 'A09p53060' => 'bna', 'A10p31890' => 'bna', 'Aa31LG10G15040' => 'aar', 'Aa31LG1G21090' => 'aar', 'Aa31LG1G26900' => 'aar', 'Aa31LG3G1820' => 'aar', 'Aa31LG5G1100' => 'aar', 'Aa31LG6G4740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2265' => 'aag', 'Actinidia07998' => 'ach', 'Actinidia11266' => 'ach', 'Actinidia12682' => 'ach', 'Actinidia26479' => 'ach', 'Actinidia31406' => 'ach', 'Actinidia32437' => 'ach', 'Actinidia38862' => 'ach', 'Ah.05g174230' => 'amhyb', 'Ah.05g179070' => 'amhyb', 'Ah.05g179090' => 'amhyb', 'Ah.12g059950' => 'amhyb', 'AL3G20480' => 'aly', 'AL4G44520' => 'aly', 'AL5G43110' => 'aly', 'AL6G13890' => 'aly', 'AL6G52620' => 'aly', 'AL7G30830' => 'aly', 'Aqoxy1G00899' => 'aox', 'Aqoxy5G04333' => 'aox', 'Aqoxy7G00641' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3IZ0NN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4EF6AW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W9P8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79GA3M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C43NQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFCU6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G95YVJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCHK29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LU1UG8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX91RN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGB4B1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8DA0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9H7JI' => 'arhy', 'AT3G09320' => 'ath', 'AT3G60800' => 'ath', 'AT4G00840' => 'ath', 'AT4G22750' => 'ath', 'AT5G04270' => 'ath', 'ATR0090G003' => 'atr', 'ATR0559G349' => 'atr', 'ATR0680G261' => 'atr', 'ATR0810G048' => 'atr', 'Atru.chr12.831' => 'acertr', 'Atru.chr5.303' => 'acertr', 'Atru.chr5.748' => 'acertr', 'Atru.chr8.1999' => 'acertr', 'Atru.chr9.1436' => 'acertr', 'AUR62004211' => 'cqu', 'AUR62004548' => 'cqu', 'AUR62013637' => 'cqu', 'AUR62022662' => 'cqu', 'AUR62025777' => 'cqu', 'AUR62042386' => 'cqu', 'BcaB01g02310' => 'bca', 'BcaB01g06062' => 'bca', 'BcaB02g08975' => 'bca', 'BcaB02g08980' => 'bca', 'BcaC01g04228' => 'bca', 'BcaC01g06830' => 'bca', 'BcaC02g10186' => 'bca', 'BcaC02g12214' => 'bca', 'BcaC04g24101' => 'bca', 'BcaC05g29520' => 'bca', 'BcaC05g29661' => 'bca', 'BcaC06g32130' => 'bca', 'BcaC06g32131' => 'bca', 'BcaC07g40601' => 'bca', 'BcaC07g42641' => 'bca', 'BcaNung01038' => 'bca', 'BcaNung01676' => 'bca', 'BcaNung02480' => 'bca', 'BcaNung07376' => 'bca', 'BolC3t16146H' => 'bol', 'BolC3t16637H' => 'bol', 'BolC4t22257H' => 'bol', 'BolC4t24728H' => 'bol', 'BolC5t34517H' => 'bol', 'BolC7t45703H' => 'bol', 'BolC8t51166H' => 'bol', 'BolC9t53038H' => 'bol', 'BolC9t60000H' => 'bol', 'BraA01t01345Z' => 'bra', 'BraA01t01346Z' => 'bra', 'BraA01t01348Z' => 'bra', 'BraA03t12347Z' => 'bra', 'BraA03t12775Z' => 'bra', 'BraA03t14439Z' => 'bra', 'BraA04t15860Z' => 'bra', 'BraA05t19511Z' => 'bra', 'BraA05t22746Z' => 'bra', 'BraA09t35767Z' => 'bra', 'BraA09t40732Z' => 'bra', 'BraA10t45233Z' => 'bra', 'C03p38720' => 'bna', 'C03p43680' => 'bna', 'C04p06350' => 'bna', 'C04p31800' => 'bna', 'C05p58680' => 'bna', 'C07p52110' => 'bna', 'C08p35760' => 'bna', 'C09p01050' => 'bna', 'C09p72600' => 'bna', 'CAN.G106.2' => 'can', 'CAN.G1482.1' => 'can', 'CAN.G324.12' => 'can', 'CAN.G388.20' => 'can', 'CAN.G412.7' => 'can', 'CAN.G694.32' => 'can', 'CAN.G92.12' => 'can', 'CANSAT11G2353' => 'cansat', 'CANSAT21G1398' => 'cansat', 'CANSAT56G2456' => 'cansat', 'CANSAT56G3031' => 'cansat', 'CANSAT56G4539' => 'cansat', 'CARHR083680' => 'chi', 'CARHR171190' => 'chi', 'CARHR209010' => 'chi', 'CARHR229680' => 'chi', 'CARHR249490' => 'chi', 'Carub.0003s0844' => 'cru', 'Carub.0005s2755' => 'cru', 'Carub.0006s0322' => 'cru', 'Carub.0006s3586' => 'cru', 'Carub.0007s1855' => 'cru', 'Ca_07808_v3' => 'car', 'Ca_09535_v3' => 'car', 'Ca_10548_v3' => 'car', 'Ca_19913_v3' => 'car', 'Ca_19916_v3' => 'car', 'Ca_19975_v3' => 'car', 'CBR_g22876' => 'cbr', 'CBR_g22879' => 'cbr', 'CBR_g38491' => 'cbr', 'CBR_g54185' => 'cbr', 'CBR_g54190' => 'cbr', 'Cc02_g11020' => 'ccan', 'Cc02_g23920' => 'ccan', 'Cc02_g39860' => 'ccan', 'Cc02_g39870' => 'ccan', 'Cc03_g06760' => 'ccan', 'Cc06_g02450' => 'ccan', 'Cc09_g09450' => 'ccan', 'CDE02G1959' => 'cde', 'CDE04G0600' => 'cde', 'CDE07G1996' => 'cde', 'CDE07G2078' => 'cde', 'CDE11G0611' => 'cde', 'Cfa001683' => 'cfa', 'Cfa001734' => 'cfa', 'Cfa001737' => 'cfa', 'Cfa003751' => 'cfa', 'Cfa012019' => 'cfa', 'Cfa017353' => 'cfa', 'Cfa017732' => 'cfa', 'Cfa022464' => 'cfa', 'Ciclev10012400m.g' => 'ccl', 'Ciclev10021242m.g' => 'ccl', 'Ciclev10021302m.g' => 'ccl', 'Ciclev10021463m.g' => 'ccl', 'Ciclev10032359m.g' => 'ccl', 'CiPaw.01G081000' => 'cil', 'CiPaw.01G262500' => 'cil', 'CiPaw.01G269800' => 'cil', 'CiPaw.02G168400' => 'cil', 'CiPaw.05G119500' => 'cil', 'CiPaw.11G147300' => 'cil', 'ClCG01G003630' => 'cla', 'ClCG05G000510' => 'cla', 'ClCG05G002300' => 'cla', 'ClCG08G007650' => 'cla', 'ClCG10G021250' => 'cla', 'COL.COLO4_06218' => 'col', 'COL.COLO4_12538' => 'col', 'COL.COLO4_14775' => 'col', 'COL.COLO4_23875' => 'col', 'Cpa.g.sc141.16' => 'cpa', 'Cpa.g.sc169.16' => 'cpa', 'Cpa.g.sc244.4' => 'cpa', 'Cpa.g.sc244.5' => 'cpa', 'Cpa.g.sc29.87' => 'cpa', 'Cpa.g.sc53.115' => 'cpa', 'Cre03.g207502' => 'cre', 'Cre06.g277000' => 'cre', 'Cre09.g394050' => 'cre', 'CsaV3_3G007680' => 'csa', 'CsaV3_3G009710' => 'csa', 'CsaV3_3G034790' => 'csa', 'CsaV3_5G003750' => 'csa', 'CsaV3_6G036620' => 'csa', 'CSS0002288' => 'camsi', 'CSS0011250' => 'camsi', 'CSS0021619' => 'camsi', 'CSS0046701' => 'camsi', 'DCAR_006420' => 'dca', 'DCAR_006865' => 'dca', 'DCAR_008558' => 'dca', 'DCAR_028754' => 'dca', 'DCAR_028755' => 'dca', 'Dinv31218' => 'din', 'Dinv32371' => 'din', 'Dinv34250' => 'din', 'Dinv37156' => 'din', 'Dinv43704' => 'din', 'Duzib093G1811' => 'dzi', 'Duzib106G1622' => 'dzi', 'Duzib114G0504' => 'dzi', 'Duzib128G0338' => 'dzi', 'Duzib128G1577' => 'dzi', 'Duzib133G0104' => 'dzi', 'Duzib133G1080' => 'dzi', 'Duzib138G0324' => 'dzi', 'Duzib138G0394' => 'dzi', 'Duzib205G0122' => 'dzi', 'Duzib268G1020' => 'dzi', 'Duzib268G1359' => 'dzi', 'ECA232G3929' => 'eca', 'ECA236G2210' => 'eca', 'ECA236G2287' => 'eca', 'ECA240G4568' => 'eca', 'ECA247G0894' => 'eca', 'EL10Ac1g00200' => 'bvu', 'EL10Ac1g00886' => 'bvu', 'EL10As1g23091' => 'bvu', 'EL10As1g23092' => 'bvu', 'Eucgr.A01284' => 'egr', 'Eucgr.A01285' => 'egr', 'Eucgr.D02456' => 'egr', 'Eucgr.E00018' => 'egr', 'Eucgr.E01439' => 'egr', 'Eucgr.G02859' => 'egr', 'FAN01G0168' => 'fan', 'FAN01G0453' => 'fan', 'FAN01G2761' => 'fan', 'FAN02G1239' => 'fan', 'FAN03G0645' => 'fan', 'FAN03G2707' => 'fan', 'FAN03G2978' => 'fan', 'FAN04G0227' => 'fan', 'FAN06G0091' => 'fan', 'FAN06G1418' => 'fan', 'FAN06G1512' => 'fan', 'FAN06G1986' => 'fan', 'FAN06G2905' => 'fan', 'FAN06G4325' => 'fan', 'FAN08G0033' => 'fan', 'FAN09G0642' => 'fan', 'FAN10G1763' => 'fan', 'FAN10G2026' => 'fan', 'FAN10G2513' => 'fan', 'FAN10G3402' => 'fan', 'FAN10G3564' => 'fan', 'FAN10G3987' => 'fan', 'FAN13G1490' => 'fan', 'FAN14G5857' => 'fan', 'FAN18G1188' => 'fan', 'FvH4_5g00750' => 'fve', 'FvH4_6g13410' => 'fve', 'FvH4_7g11740' => 'fve', 'FvH4_7g17410' => 'fve', 'FvH4_7g18860' => 'fve', 'Glyma.01G099100' => 'gma', 'Glyma.01G142300' => 'gma', 'Glyma.03G025500' => 'gma', 'Glyma.03G069700' => 'gma', 'Glyma.03G260000' => 'gma', 'Glyma.09G269800' => 'gma', 'Glyma.10G208700' => 'gma', 'Glyma.18G220400' => 'gma', 'Glyma.20G182000' => 'gma', 'Gohir.A01G221726' => 'ghi', 'Gohir.A07G134600' => 'ghi', 'Gohir.A07G146000' => 'ghi', 'Gohir.A08G173900' => 'ghi', 'Gohir.A09G194900' => 'ghi', 'Gohir.A10G204100' => 'ghi', 'Gohir.A11G080600' => 'ghi', 'Gohir.A11G327500' => 'ghi', 'Gohir.A12G101800' => 'ghi', 'Gohir.D01G211200' => 'ghi', 'Gohir.D07G139200' => 'ghi', 'Gohir.D07G152100' => 'ghi', 'Gohir.D08G192600' => 'ghi', 'Gohir.D09G189200' => 'ghi', 'Gohir.D10G212000' => 'ghi', 'Gohir.D11G085200' => 'ghi', 'Gohir.D11G346400' => 'ghi', 'Gohir.D12G104800' => 'ghi', 'Gorai.001G151300' => 'gra', 'Gorai.001G174100' => 'gra', 'Gorai.002G257000' => 'gra', 'Gorai.004G202600' => 'gra', 'Gorai.007G090900' => 'gra', 'Gorai.007G376700' => 'gra', 'Gorai.008G114100' => 'gra', 'Gorai.011G237900' => 'gra', 'GSVIVG01005450001' => 'vvi', 'GSVIVG01016232001' => 'vvi', 'GSVIVG01026157001' => 'vvi', 'GSVIVG01027419001' => 'vvi', 'GSVIVG01027631001' => 'vvi', 'GSVIVG01034143001' => 'vvi', 'HanXRQChr03g0093921' => 'han', 'HanXRQChr04g0120001' => 'han', 'HanXRQChr04g0122561' => 'han', 'HanXRQChr09g0246851' => 'han', 'HanXRQChr10g0293311' => 'han', 'HanXRQChr13g0425231' => 'han', 'HanXRQChr16g0532571' => 'han', 'Haze_09050' => 'cav', 'Haze_15715' => 'cav', 'Haze_15716' => 'cav', 'Haze_16803' => 'cav', 'Haze_16850' => 'cav', 'Hma1.2p1_0301F.1_g118655' => 'hma', 'Hma1.2p1_0309F.1_g120590' => 'hma', 'Hma1.2p1_0936F.1_g238900' => 'hma', 'Hma1.2p1_3552F.1_g336740' => 'hma', 'HPP92_003520' => 'vpl', 'HPP92_006628' => 'vpl', 'HPP92_006645' => 'vpl', 'HPP92_014669' => 'vpl', 'HPP92_015077' => 'vpl', 'Hund16742' => 'sun', 'Hund17022' => 'sun', 'Lalb_Chr02g0152131' => 'lal', 'Lalb_Chr05g0225371' => 'lal', 'Lalb_Chr07g0189841' => 'lal', 'Lalb_Chr07g0192961' => 'lal', 'Lalb_Chr12g0208221' => 'lal', 'Lalb_Chr13g0291211' => 'lal', 'Lalb_Chr13g0291781' => 'lal', 'Lalb_Chr18g0044651' => 'lal', 'Lalb_Chr21g0313731' => 'lal', 'Lj1g0022533' => 'lja', 'Lj2A18T50' => 'lonja', 'Lj2A92G93' => 'lonja', 'Lj3A965T73' => 'lonja', 'Lj3g0000673' => 'lja', 'Lj3g0002666' => 'lja', 'Lj4g0016985' => 'lja', 'Lj5g0003625' => 'lja', 'Lj7A529G36' => 'lonja', 'Lj9A569T49' => 'lonja', 'Lj9A604T63' => 'lonja', 'Lsat_1_v5_gn_3_132060' => 'lsa', 'Lsat_1_v5_gn_4_68941' => 'lsa', 'Lsat_1_v5_gn_5_95580' => 'lsa', 'Lsat_1_v5_gn_7_161' => 'lsa', 'Lsat_1_v5_gn_7_7041' => 'lsa', 'Lsat_1_v5_gn_9_33481' => 'lsa', 'Lsat_1_v5_gn_9_68260' => 'lsa', 'Manes.01G073100' => 'mes', 'Manes.01G266300' => 'mes', 'Manes.02G033300' => 'mes', 'Manes.05G017900' => 'mes', 'Manes.05G046100' => 'mes', 'Manes.08G080900' => 'mes', 'Manes.10G049400' => 'mes', 'Mapoly0009s0186' => 'mpo', 'Mapoly0036s0118' => 'mpo', 'Mapoly0101s0046' => 'mpo', 'MBI04_g30218_MAGBIO' => 'mbi', 'MBI04_g35564_MAGBIO' => 'mbi', 'MBI12_g34011_MAGBIO' => 'mbi', 'MBI14_g04655_MAGBIO' => 'mbi', 'MCO07G653' => 'mco', 'MCO10G173' => 'mco', 'MD01G1087100' => 'mdo', 'MD01G1104200' => 'mdo', 'MD02G1205100' => 'mdo', 'MD04G1079200' => 'mdo', 'MD04G1131400' => 'mdo', 'MD07G1121600' => 'mdo', 'MD07G1157300' => 'mdo', 'MD07G1171000' => 'mdo', 'MD12G1144500' => 'mdo', 'Medtr1g094610' => 'mtr', 'Medtr4g021795' => 'mtr', 'Medtr4g023760' => 'mtr', 'Medtr7g118050' => 'mtr', 'MELO3C005582.2' => 'cme', 'MELO3C005989.2' => 'cme', 'MELO3C006192.2' => 'cme', 'MELO3C009248.2' => 'cme', 'MELO3C019817.2' => 'cme', 'Migut.B01625' => 'egut', 'Migut.B01915' => 'egut', 'Migut.F01721' => 'egut', 'Migut.J00314' => 'egut', 'MSTRG.20742' => 'ama', 'MSTRG.8134' => 'ama', 'Nitab4.5_0000096g0010' => 'nta', 'Nitab4.5_0000202g0030' => 'nta', 'Nitab4.5_0000216g0370' => 'nta', 'Nitab4.5_0000457g0230' => 'nta', 'Nitab4.5_0001702g0170' => 'nta', 'Nitab4.5_0003607g0010' => 'nta', 'Nitab4.5_0004917g0020' => 'nta', 'Nitab4.5_0007059g0010' => 'nta', 'Nitab4.5_0007184g0010' => 'nta', 'Nitab4.5_0007346g0020' => 'nta', 'Nn1g00410' => 'nnu', 'Nn1g01252' => 'nnu', 'Nn2g11168' => 'nnu', 'Nn2g13403' => 'nnu', 'Nn2g13760' => 'nnu', 'Nn4g26380' => 'nnu', 'Oeu000806.2' => 'oeu', 'Oeu005788.1' => 'oeu', 'Oeu006900.3' => 'oeu', 'Oeu007797.1' => 'oeu', 'Oeu011932.1' => 'oeu', 'Oeu022739.1' => 'oeu', 'Oeu037918.1' => 'oeu', 'Oeu055490.2' => 'oeu', 'Os01g0844400' => 'osa', 'Os02g0819100' => 'osa', 'Os03g0804300' => 'osa', 'Os05g0458000' => 'osa', 'Os07g0467800' => 'osa', 'Os12g0602200' => 'osa', 'Peaxi162Scf00013g03444' => 'pax', 'Peaxi162Scf00094g01120' => 'pax', 'Peaxi162Scf00191g01211' => 'pax', 'Peaxi162Scf00238g01110' => 'pax', 'Peaxi162Scf00330g00719' => 'pax', 'Peaxi162Scf00627g00018' => 'pax', 'PGR031G2686' => 'pgr', 'PGR042G0809' => 'pgr', 'PGR142G0193' => 'pgr', 'PGSC0003DMG400011066' => 'stu', 'PGSC0003DMG400012041' => 'stu', 'PGSC0003DMG400013678' => 'stu', 'PGSC0003DMG400023477' => 'stu', 'PGSC0003DMG400025956' => 'stu', 'PGSC0003DMG401019151' => 'stu', 'Phvul.006G116400' => 'pvu', 'Phvul.007G097300' => 'pvu', 'Phvul.010G015000' => 'pvu', 'Phvul.010G083900' => 'pvu', 'Potri.001G117100' => 'ptr', 'Potri.002G147300' => 'ptr', 'Potri.003G115600' => 'ptr', 'Potri.006G087400' => 'ptr', 'Potri.010G226100' => 'ptr', 'Potri.014G069200' => 'ptr', 'Potri.014G104000' => 'ptr', 'Potri.016G100200' => 'ptr', 'Pp3c10_20450' => 'ppa', 'Pp3c1_42400' => 'ppa', 'Pp3c3_24390' => 'ppa', 'Pp3c3_2860' => 'ppa', 'PRCOL_00003193' => 'pco', 'Prupe.2G144500' => 'ppe', 'Prupe.2G195700' => 'ppe', 'Prupe.2G209800' => 'ppe', 'Prupe.5G080000' => 'ppe', 'Prupe.6G257900' => 'ppe', 'Psat3g001160' => 'psa', 'Psat6g181880' => 'psa', 'Psat7g233720' => 'psa', 'PSO063G7587' => 'pso', 'PSO339G2145' => 'pso', 'PSO339G3369' => 'pso', 'PSO478G2747' => 'pso', 'PSO513G0140' => 'pso', 'PSO782G1614' => 'pso', 'PSO782G4889' => 'pso', 'PSO782G5485' => 'pso', 'PSO801G0241' => 'pso', 'QL07p048854' => 'qlo', 'QL08p046745' => 'qlo', 'QL08p052606' => 'qlo', 'QL08p053414' => 'qlo', 'QL08p054868' => 'qlo', 'RcHm_v2.0_Chr1g0350251' => 'rch', 'RcHm_v2.0_Chr1g0360851' => 'rch', 'RcHm_v2.0_Chr1g0362791' => 'rch', 'RcHm_v2.0_Chr3g0466281' => 'rch', 'RcHm_v2.0_Chr7g0201481' => 'rch', 'Rhsim01G0148600' => 'rsi', 'Rhsim05G0194400' => 'rsi', 'Rhsim07G0000700' => 'rsi', 'Rhsim07G0000800' => 'rsi', 'Rhsim07G0027900' => 'rsi', 'Rhsim09G0149500' => 'rsi', 'RhsimUnG0186900' => 'rsi', 'Sabra01G0089900' => 'sbr', 'Sabra02G0114700' => 'sbr', 'Sabra02G0116300' => 'sbr', 'Sabra03G0080100' => 'sbr', 'Sabra08G0024300' => 'sbr', 'Sabra10G0174300' => 'sbr', 'Sabra14G0048900' => 'sbr', 'Sabra14G0076500' => 'sbr', 'SalBow5G2513' => 'sbo', 'Sc01g0002300' => 'sci', 'Sc01g0004450' => 'sci', 'Sc06g0001680' => 'sci', 'Sc23g0003580' => 'sci', 'Sed0000913' => 'sed', 'Sed0001655' => 'sed', 'Sed0007745' => 'sed', 'Sed0010951' => 'sed', 'Sed0017599' => 'sed', 'Sed0021405' => 'sed', 'Sed0022810' => 'sed', 'SEGI_07099' => 'sgi', 'SEGI_11931' => 'sgi', 'SEGI_13187' => 'sgi', 'SEGI_29958' => 'sgi', 'SEGI_36351' => 'sgi', 'SGA_v2.0_scaffold126G33770' => 'sas', 'SGA_v2.0_scaffold153G37003' => 'sas', 'SGA_v2.0_scaffold2G01359' => 'sas', 'SGA_v2.0_scaffold5G03064' => 'sas', 'SGA_v2.0_scaffold95G28903' => 'sas', 'SHI12701' => 'shi', 'SHI26410' => 'shi', 'SHI38997' => 'shi', 'SHI53759' => 'shi', 'SHI53886' => 'shi', 'SHI54714' => 'shi', 'SMO011G0041' => 'smo', 'SMO146G0251' => 'smo', 'SMO160G0004' => 'smo', 'SMO174G0057' => 'smo', 'SMO244G0089' => 'smo', 'SMO296G0011' => 'smo', 'Solyc01g091280.3' => 'sly', 'Solyc05g047610.3' => 'sly', 'Solyc05g047640.3' => 'sly', 'Solyc05g055630.3' => 'sly', 'Solyc10g018160.2' => 'sly', 'Solyc10g084820.2' => 'sly', 'Solyc10g086565.2' => 'sly', 'Sopen01g037030' => 'spe', 'Sopen05g027920' => 'spe', 'Sopen05g034070' => 'spe', 'Sopen10g007260' => 'spe', 'Sopen10g034260' => 'spe', 'Sopen10g035950' => 'spe', 'Sp3g07710' => 'spa', 'Sp4g27420' => 'spa', 'Sp5g02450' => 'spa', 'Sp6g01280' => 'spa', 'Sp6g38480' => 'spa', 'Sp7g20780' => 'spa', 'TAR374G1413' => 'tar', 'TAR623G1777' => 'tar', 'TAR629G2370' => 'tar', 'TAR633G1759' => 'tar', 'TAR636G3387' => 'tar', 'THA.LOC104802447' => 'tha', 'THA.LOC104813916' => 'tha', 'THA.LOC104816423' => 'tha', 'THA.LOC104817246' => 'tha', 'THA.LOC104825895' => 'tha', 'Thecc.01G335200' => 'tca', 'Thecc.01G377400' => 'tca', 'Thecc.03G262200' => 'tca', 'Thecc.05G036800' => 'tca', 'Thecc.10G080500' => 'tca', 'Thecc.10G080800' => 'tca', 'Thhalv10001560m.g' => 'esa', 'Thhalv10006120m.g' => 'esa', 'Thhalv10014375m.g' => 'esa', 'Thhalv10021264m.g' => 'esa', 'Thhalv10028856m.g' => 'esa', 'TPR.G1914' => 'tpr', 'TPR.G4757' => 'tpr', 'TPR.G5595' => 'tpr', 'TWI14G0952' => 'twi', 'TWI14G1307' => 'twi', 'TWI38G2143' => 'twi', 'TWI59G0826' => 'twi', 'TWI77G0527' => 'twi', 'TWI81G0150' => 'twi', 'unitig_21.g21018' => 'ugi', 'unitig_26.g9725' => 'ugi', 'unitig_744.g24653' => 'ugi', 'unitig_749.g13778' => 'ugi', 'unitig_899.g15035' => 'ugi', 'vmacro04296' => 'vma', 'vmacro04852' => 'vma', 'vmacro13404' => 'vma', 'vmacro20169' => 'vma', 'vmacro21014' => 'vma', 'VMungo0331G0237' => 'vmu', 'VMungo0331G0706' => 'vmu', 'VMungo0331G1361' => 'vmu', 'VMungo0331G1489' => 'vmu', 'VMungo0540G1037' => 'vmu', 'VMungo0720G2487' => 'vmu', 'VMungo0720G2721' => 'vmu', 'Zm00001eb086860' => 'zma', 'Zm00001eb104760' => 'zma', 'Zm00001eb148220' => 'zma', 'Zm00001eb259030' => 'zma', 'Zm00001eb289590' => 'zma', 'Zm00001eb420150' => 'zma' ) $gf_id = 'HOM05D000968' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000968' ) $data_identifier = 'HOM05D000968' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 19, 'bol' => (int) 9, 'bra' => (int) 12, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 5, 'ccan' => (int) 7, 'cde' => (int) 5, 'cfa' => (int) 8, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 4, 'dca' => (int) 5, 'din' => (int) 5, 'dzi' => (int) 12, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 25, 'fve' => (int) 5, 'gma' => (int) 9, 'ghi' => (int) 18, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 7, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 5, 'sun' => (int) 2, 'lal' => (int) 9, 'lja' => (int) 5, 'lonja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 9, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 2, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 3, 'stu' => (int) 6, 'pvu' => (int) 4, 'ptr' => (int) 8, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 3, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 1, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 5, 'sas' => (int) 5, 'shi' => (int) 6, 'smo' => (int) 6, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 3, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420150' $species_info = array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ) $local_species = 'pax' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000968', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p31690' => 'bna', 'A03p36040' => 'bna', 'A03p53730' => 'bna', 'A04p01410' => 'bna', 'A05p05420' => 'bna', 'A05p39630' => 'bna', 'A05p39640' => 'bna', 'A09p00970' => 'bna', 'A09p53060' => 'bna', 'A10p31890' => 'bna', 'Aa31LG10G15040' => 'aar', 'Aa31LG1G21090' => 'aar', 'Aa31LG1G26900' => 'aar', 'Aa31LG3G1820' => 'aar', 'Aa31LG5G1100' => 'aar', 'Aa31LG6G4740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2265' => 'aag', 'Actinidia07998' => 'ach', 'Actinidia11266' => 'ach', 'Actinidia12682' => 'ach', 'Actinidia26479' => 'ach', 'Actinidia31406' => 'ach', 'Actinidia32437' => 'ach', 'Actinidia38862' => 'ach', 'Ah.05g174230' => 'amhyb', 'Ah.05g179070' => 'amhyb', 'Ah.05g179090' => 'amhyb', 'Ah.12g059950' => 'amhyb', 'AL3G20480' => 'aly', 'AL4G44520' => 'aly', 'AL5G43110' => 'aly', 'AL6G13890' => 'aly', 'AL6G52620' => 'aly', 'AL7G30830' => 'aly', 'Aqoxy1G00899' => 'aox', 'Aqoxy5G04333' => 'aox', 'Aqoxy7G00641' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3IZ0NN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4EF6AW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W9P8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79GA3M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C43NQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFCU6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G95YVJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCHK29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LU1UG8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX91RN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGB4B1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8DA0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9H7JI' => 'arhy', 'AT3G09320' => 'ath', 'AT3G60800' => 'ath', 'AT4G00840' => 'ath', 'AT4G22750' => 'ath', 'AT5G04270' => 'ath', 'ATR0090G003' => 'atr', 'ATR0559G349' => 'atr', 'ATR0680G261' => 'atr', 'ATR0810G048' => 'atr', 'Atru.chr12.831' => 'acertr', 'Atru.chr5.303' => 'acertr', 'Atru.chr5.748' => 'acertr', 'Atru.chr8.1999' => 'acertr', 'Atru.chr9.1436' => 'acertr', 'AUR62004211' => 'cqu', 'AUR62004548' => 'cqu', 'AUR62013637' => 'cqu', 'AUR62022662' => 'cqu', 'AUR62025777' => 'cqu', 'AUR62042386' => 'cqu', 'BcaB01g02310' => 'bca', 'BcaB01g06062' => 'bca', 'BcaB02g08975' => 'bca', 'BcaB02g08980' => 'bca', 'BcaC01g04228' => 'bca', 'BcaC01g06830' => 'bca', 'BcaC02g10186' => 'bca', 'BcaC02g12214' => 'bca', 'BcaC04g24101' => 'bca', 'BcaC05g29520' => 'bca', 'BcaC05g29661' => 'bca', 'BcaC06g32130' => 'bca', 'BcaC06g32131' => 'bca', 'BcaC07g40601' => 'bca', 'BcaC07g42641' => 'bca', 'BcaNung01038' => 'bca', 'BcaNung01676' => 'bca', 'BcaNung02480' => 'bca', 'BcaNung07376' => 'bca', 'BolC3t16146H' => 'bol', 'BolC3t16637H' => 'bol', 'BolC4t22257H' => 'bol', 'BolC4t24728H' => 'bol', 'BolC5t34517H' => 'bol', 'BolC7t45703H' => 'bol', 'BolC8t51166H' => 'bol', 'BolC9t53038H' => 'bol', 'BolC9t60000H' => 'bol', 'BraA01t01345Z' => 'bra', 'BraA01t01346Z' => 'bra', 'BraA01t01348Z' => 'bra', 'BraA03t12347Z' => 'bra', 'BraA03t12775Z' => 'bra', 'BraA03t14439Z' => 'bra', 'BraA04t15860Z' => 'bra', 'BraA05t19511Z' => 'bra', 'BraA05t22746Z' => 'bra', 'BraA09t35767Z' => 'bra', 'BraA09t40732Z' => 'bra', 'BraA10t45233Z' => 'bra', 'C03p38720' => 'bna', 'C03p43680' => 'bna', 'C04p06350' => 'bna', 'C04p31800' => 'bna', 'C05p58680' => 'bna', 'C07p52110' => 'bna', 'C08p35760' => 'bna', 'C09p01050' => 'bna', 'C09p72600' => 'bna', 'CAN.G106.2' => 'can', 'CAN.G1482.1' => 'can', 'CAN.G324.12' => 'can', 'CAN.G388.20' => 'can', 'CAN.G412.7' => 'can', 'CAN.G694.32' => 'can', 'CAN.G92.12' => 'can', 'CANSAT11G2353' => 'cansat', 'CANSAT21G1398' => 'cansat', 'CANSAT56G2456' => 'cansat', 'CANSAT56G3031' => 'cansat', 'CANSAT56G4539' => 'cansat', 'CARHR083680' => 'chi', 'CARHR171190' => 'chi', 'CARHR209010' => 'chi', 'CARHR229680' => 'chi', 'CARHR249490' => 'chi', 'Carub.0003s0844' => 'cru', 'Carub.0005s2755' => 'cru', 'Carub.0006s0322' => 'cru', 'Carub.0006s3586' => 'cru', 'Carub.0007s1855' => 'cru', 'Ca_07808_v3' => 'car', 'Ca_09535_v3' => 'car', 'Ca_10548_v3' => 'car', 'Ca_19913_v3' => 'car', 'Ca_19916_v3' => 'car', 'Ca_19975_v3' => 'car', 'CBR_g22876' => 'cbr', 'CBR_g22879' => 'cbr', 'CBR_g38491' => 'cbr', 'CBR_g54185' => 'cbr', 'CBR_g54190' => 'cbr', 'Cc02_g11020' => 'ccan', 'Cc02_g23920' => 'ccan', 'Cc02_g39860' => 'ccan', 'Cc02_g39870' => 'ccan', 'Cc03_g06760' => 'ccan', 'Cc06_g02450' => 'ccan', 'Cc09_g09450' => 'ccan', 'CDE02G1959' => 'cde', 'CDE04G0600' => 'cde', 'CDE07G1996' => 'cde', 'CDE07G2078' => 'cde', 'CDE11G0611' => 'cde', 'Cfa001683' => 'cfa', 'Cfa001734' => 'cfa', 'Cfa001737' => 'cfa', 'Cfa003751' => 'cfa', 'Cfa012019' => 'cfa', 'Cfa017353' => 'cfa', 'Cfa017732' => 'cfa', 'Cfa022464' => 'cfa', 'Ciclev10012400m.g' => 'ccl', 'Ciclev10021242m.g' => 'ccl', 'Ciclev10021302m.g' => 'ccl', 'Ciclev10021463m.g' => 'ccl', 'Ciclev10032359m.g' => 'ccl', 'CiPaw.01G081000' => 'cil', 'CiPaw.01G262500' => 'cil', 'CiPaw.01G269800' => 'cil', 'CiPaw.02G168400' => 'cil', 'CiPaw.05G119500' => 'cil', 'CiPaw.11G147300' => 'cil', 'ClCG01G003630' => 'cla', 'ClCG05G000510' => 'cla', 'ClCG05G002300' => 'cla', 'ClCG08G007650' => 'cla', 'ClCG10G021250' => 'cla', 'COL.COLO4_06218' => 'col', 'COL.COLO4_12538' => 'col', 'COL.COLO4_14775' => 'col', 'COL.COLO4_23875' => 'col', 'Cpa.g.sc141.16' => 'cpa', 'Cpa.g.sc169.16' => 'cpa', 'Cpa.g.sc244.4' => 'cpa', 'Cpa.g.sc244.5' => 'cpa', 'Cpa.g.sc29.87' => 'cpa', 'Cpa.g.sc53.115' => 'cpa', 'Cre03.g207502' => 'cre', 'Cre06.g277000' => 'cre', 'Cre09.g394050' => 'cre', 'CsaV3_3G007680' => 'csa', 'CsaV3_3G009710' => 'csa', 'CsaV3_3G034790' => 'csa', 'CsaV3_5G003750' => 'csa', 'CsaV3_6G036620' => 'csa', 'CSS0002288' => 'camsi', 'CSS0011250' => 'camsi', 'CSS0021619' => 'camsi', 'CSS0046701' => 'camsi', 'DCAR_006420' => 'dca', 'DCAR_006865' => 'dca', 'DCAR_008558' => 'dca', 'DCAR_028754' => 'dca', 'DCAR_028755' => 'dca', 'Dinv31218' => 'din', 'Dinv32371' => 'din', 'Dinv34250' => 'din', 'Dinv37156' => 'din', 'Dinv43704' => 'din', 'Duzib093G1811' => 'dzi', 'Duzib106G1622' => 'dzi', 'Duzib114G0504' => 'dzi', 'Duzib128G0338' => 'dzi', 'Duzib128G1577' => 'dzi', 'Duzib133G0104' => 'dzi', 'Duzib133G1080' => 'dzi', 'Duzib138G0324' => 'dzi', 'Duzib138G0394' => 'dzi', 'Duzib205G0122' => 'dzi', 'Duzib268G1020' => 'dzi', 'Duzib268G1359' => 'dzi', 'ECA232G3929' => 'eca', 'ECA236G2210' => 'eca', 'ECA236G2287' => 'eca', 'ECA240G4568' => 'eca', 'ECA247G0894' => 'eca', 'EL10Ac1g00200' => 'bvu', 'EL10Ac1g00886' => 'bvu', 'EL10As1g23091' => 'bvu', 'EL10As1g23092' => 'bvu', 'Eucgr.A01284' => 'egr', 'Eucgr.A01285' => 'egr', 'Eucgr.D02456' => 'egr', 'Eucgr.E00018' => 'egr', 'Eucgr.E01439' => 'egr', 'Eucgr.G02859' => 'egr', 'FAN01G0168' => 'fan', 'FAN01G0453' => 'fan', 'FAN01G2761' => 'fan', 'FAN02G1239' => 'fan', 'FAN03G0645' => 'fan', 'FAN03G2707' => 'fan', 'FAN03G2978' => 'fan', 'FAN04G0227' => 'fan', 'FAN06G0091' => 'fan', 'FAN06G1418' => 'fan', 'FAN06G1512' => 'fan', 'FAN06G1986' => 'fan', 'FAN06G2905' => 'fan', 'FAN06G4325' => 'fan', 'FAN08G0033' => 'fan', 'FAN09G0642' => 'fan', 'FAN10G1763' => 'fan', 'FAN10G2026' => 'fan', 'FAN10G2513' => 'fan', 'FAN10G3402' => 'fan', 'FAN10G3564' => 'fan', 'FAN10G3987' => 'fan', 'FAN13G1490' => 'fan', 'FAN14G5857' => 'fan', 'FAN18G1188' => 'fan', 'FvH4_5g00750' => 'fve', 'FvH4_6g13410' => 'fve', 'FvH4_7g11740' => 'fve', 'FvH4_7g17410' => 'fve', 'FvH4_7g18860' => 'fve', 'Glyma.01G099100' => 'gma', 'Glyma.01G142300' => 'gma', 'Glyma.03G025500' => 'gma', 'Glyma.03G069700' => 'gma', 'Glyma.03G260000' => 'gma', 'Glyma.09G269800' => 'gma', 'Glyma.10G208700' => 'gma', 'Glyma.18G220400' => 'gma', 'Glyma.20G182000' => 'gma', 'Gohir.A01G221726' => 'ghi', 'Gohir.A07G134600' => 'ghi', 'Gohir.A07G146000' => 'ghi', 'Gohir.A08G173900' => 'ghi', 'Gohir.A09G194900' => 'ghi', 'Gohir.A10G204100' => 'ghi', 'Gohir.A11G080600' => 'ghi', 'Gohir.A11G327500' => 'ghi', 'Gohir.A12G101800' => 'ghi', 'Gohir.D01G211200' => 'ghi', 'Gohir.D07G139200' => 'ghi', 'Gohir.D07G152100' => 'ghi', 'Gohir.D08G192600' => 'ghi', 'Gohir.D09G189200' => 'ghi', 'Gohir.D10G212000' => 'ghi', 'Gohir.D11G085200' => 'ghi', 'Gohir.D11G346400' => 'ghi', 'Gohir.D12G104800' => 'ghi', 'Gorai.001G151300' => 'gra', 'Gorai.001G174100' => 'gra', 'Gorai.002G257000' => 'gra', 'Gorai.004G202600' => 'gra', 'Gorai.007G090900' => 'gra', 'Gorai.007G376700' => 'gra', 'Gorai.008G114100' => 'gra', 'Gorai.011G237900' => 'gra', 'GSVIVG01005450001' => 'vvi', 'GSVIVG01016232001' => 'vvi', 'GSVIVG01026157001' => 'vvi', 'GSVIVG01027419001' => 'vvi', 'GSVIVG01027631001' => 'vvi', 'GSVIVG01034143001' => 'vvi', 'HanXRQChr03g0093921' => 'han', 'HanXRQChr04g0120001' => 'han', 'HanXRQChr04g0122561' => 'han', 'HanXRQChr09g0246851' => 'han', 'HanXRQChr10g0293311' => 'han', 'HanXRQChr13g0425231' => 'han', 'HanXRQChr16g0532571' => 'han', 'Haze_09050' => 'cav', 'Haze_15715' => 'cav', 'Haze_15716' => 'cav', 'Haze_16803' => 'cav', 'Haze_16850' => 'cav', 'Hma1.2p1_0301F.1_g118655' => 'hma', 'Hma1.2p1_0309F.1_g120590' => 'hma', 'Hma1.2p1_0936F.1_g238900' => 'hma', 'Hma1.2p1_3552F.1_g336740' => 'hma', 'HPP92_003520' => 'vpl', 'HPP92_006628' => 'vpl', 'HPP92_006645' => 'vpl', 'HPP92_014669' => 'vpl', 'HPP92_015077' => 'vpl', 'Hund16742' => 'sun', 'Hund17022' => 'sun', 'Lalb_Chr02g0152131' => 'lal', 'Lalb_Chr05g0225371' => 'lal', 'Lalb_Chr07g0189841' => 'lal', 'Lalb_Chr07g0192961' => 'lal', 'Lalb_Chr12g0208221' => 'lal', 'Lalb_Chr13g0291211' => 'lal', 'Lalb_Chr13g0291781' => 'lal', 'Lalb_Chr18g0044651' => 'lal', 'Lalb_Chr21g0313731' => 'lal', 'Lj1g0022533' => 'lja', 'Lj2A18T50' => 'lonja', 'Lj2A92G93' => 'lonja', 'Lj3A965T73' => 'lonja', 'Lj3g0000673' => 'lja', 'Lj3g0002666' => 'lja', 'Lj4g0016985' => 'lja', 'Lj5g0003625' => 'lja', 'Lj7A529G36' => 'lonja', 'Lj9A569T49' => 'lonja', 'Lj9A604T63' => 'lonja', 'Lsat_1_v5_gn_3_132060' => 'lsa', 'Lsat_1_v5_gn_4_68941' => 'lsa', 'Lsat_1_v5_gn_5_95580' => 'lsa', 'Lsat_1_v5_gn_7_161' => 'lsa', 'Lsat_1_v5_gn_7_7041' => 'lsa', 'Lsat_1_v5_gn_9_33481' => 'lsa', 'Lsat_1_v5_gn_9_68260' => 'lsa', 'Manes.01G073100' => 'mes', 'Manes.01G266300' => 'mes', 'Manes.02G033300' => 'mes', 'Manes.05G017900' => 'mes', 'Manes.05G046100' => 'mes', 'Manes.08G080900' => 'mes', 'Manes.10G049400' => 'mes', 'Mapoly0009s0186' => 'mpo', 'Mapoly0036s0118' => 'mpo', 'Mapoly0101s0046' => 'mpo', 'MBI04_g30218_MAGBIO' => 'mbi', 'MBI04_g35564_MAGBIO' => 'mbi', 'MBI12_g34011_MAGBIO' => 'mbi', 'MBI14_g04655_MAGBIO' => 'mbi', 'MCO07G653' => 'mco', 'MCO10G173' => 'mco', 'MD01G1087100' => 'mdo', 'MD01G1104200' => 'mdo', 'MD02G1205100' => 'mdo', 'MD04G1079200' => 'mdo', 'MD04G1131400' => 'mdo', 'MD07G1121600' => 'mdo', 'MD07G1157300' => 'mdo', 'MD07G1171000' => 'mdo', 'MD12G1144500' => 'mdo', 'Medtr1g094610' => 'mtr', 'Medtr4g021795' => 'mtr', 'Medtr4g023760' => 'mtr', 'Medtr7g118050' => 'mtr', 'MELO3C005582.2' => 'cme', 'MELO3C005989.2' => 'cme', 'MELO3C006192.2' => 'cme', 'MELO3C009248.2' => 'cme', 'MELO3C019817.2' => 'cme', 'Migut.B01625' => 'egut', 'Migut.B01915' => 'egut', 'Migut.F01721' => 'egut', 'Migut.J00314' => 'egut', 'MSTRG.20742' => 'ama', 'MSTRG.8134' => 'ama', 'Nitab4.5_0000096g0010' => 'nta', 'Nitab4.5_0000202g0030' => 'nta', 'Nitab4.5_0000216g0370' => 'nta', 'Nitab4.5_0000457g0230' => 'nta', 'Nitab4.5_0001702g0170' => 'nta', 'Nitab4.5_0003607g0010' => 'nta', 'Nitab4.5_0004917g0020' => 'nta', 'Nitab4.5_0007059g0010' => 'nta', 'Nitab4.5_0007184g0010' => 'nta', 'Nitab4.5_0007346g0020' => 'nta', 'Nn1g00410' => 'nnu', 'Nn1g01252' => 'nnu', 'Nn2g11168' => 'nnu', 'Nn2g13403' => 'nnu', 'Nn2g13760' => 'nnu', 'Nn4g26380' => 'nnu', 'Oeu000806.2' => 'oeu', 'Oeu005788.1' => 'oeu', 'Oeu006900.3' => 'oeu', 'Oeu007797.1' => 'oeu', 'Oeu011932.1' => 'oeu', 'Oeu022739.1' => 'oeu', 'Oeu037918.1' => 'oeu', 'Oeu055490.2' => 'oeu', 'Os01g0844400' => 'osa', 'Os02g0819100' => 'osa', 'Os03g0804300' => 'osa', 'Os05g0458000' => 'osa', 'Os07g0467800' => 'osa', 'Os12g0602200' => 'osa', 'Peaxi162Scf00013g03444' => 'pax', 'Peaxi162Scf00094g01120' => 'pax', 'Peaxi162Scf00191g01211' => 'pax', 'Peaxi162Scf00238g01110' => 'pax', 'Peaxi162Scf00330g00719' => 'pax', 'Peaxi162Scf00627g00018' => 'pax', 'PGR031G2686' => 'pgr', 'PGR042G0809' => 'pgr', 'PGR142G0193' => 'pgr', 'PGSC0003DMG400011066' => 'stu', 'PGSC0003DMG400012041' => 'stu', 'PGSC0003DMG400013678' => 'stu', 'PGSC0003DMG400023477' => 'stu', 'PGSC0003DMG400025956' => 'stu', 'PGSC0003DMG401019151' => 'stu', 'Phvul.006G116400' => 'pvu', 'Phvul.007G097300' => 'pvu', 'Phvul.010G015000' => 'pvu', 'Phvul.010G083900' => 'pvu', 'Potri.001G117100' => 'ptr', 'Potri.002G147300' => 'ptr', 'Potri.003G115600' => 'ptr', 'Potri.006G087400' => 'ptr', 'Potri.010G226100' => 'ptr', 'Potri.014G069200' => 'ptr', 'Potri.014G104000' => 'ptr', 'Potri.016G100200' => 'ptr', 'Pp3c10_20450' => 'ppa', 'Pp3c1_42400' => 'ppa', 'Pp3c3_24390' => 'ppa', 'Pp3c3_2860' => 'ppa', 'PRCOL_00003193' => 'pco', 'Prupe.2G144500' => 'ppe', 'Prupe.2G195700' => 'ppe', 'Prupe.2G209800' => 'ppe', 'Prupe.5G080000' => 'ppe', 'Prupe.6G257900' => 'ppe', 'Psat3g001160' => 'psa', 'Psat6g181880' => 'psa', 'Psat7g233720' => 'psa', 'PSO063G7587' => 'pso', 'PSO339G2145' => 'pso', 'PSO339G3369' => 'pso', 'PSO478G2747' => 'pso', 'PSO513G0140' => 'pso', 'PSO782G1614' => 'pso', 'PSO782G4889' => 'pso', 'PSO782G5485' => 'pso', 'PSO801G0241' => 'pso', 'QL07p048854' => 'qlo', 'QL08p046745' => 'qlo', 'QL08p052606' => 'qlo', 'QL08p053414' => 'qlo', 'QL08p054868' => 'qlo', 'RcHm_v2.0_Chr1g0350251' => 'rch', 'RcHm_v2.0_Chr1g0360851' => 'rch', 'RcHm_v2.0_Chr1g0362791' => 'rch', 'RcHm_v2.0_Chr3g0466281' => 'rch', 'RcHm_v2.0_Chr7g0201481' => 'rch', 'Rhsim01G0148600' => 'rsi', 'Rhsim05G0194400' => 'rsi', 'Rhsim07G0000700' => 'rsi', 'Rhsim07G0000800' => 'rsi', 'Rhsim07G0027900' => 'rsi', 'Rhsim09G0149500' => 'rsi', 'RhsimUnG0186900' => 'rsi', 'Sabra01G0089900' => 'sbr', 'Sabra02G0114700' => 'sbr', 'Sabra02G0116300' => 'sbr', 'Sabra03G0080100' => 'sbr', 'Sabra08G0024300' => 'sbr', 'Sabra10G0174300' => 'sbr', 'Sabra14G0048900' => 'sbr', 'Sabra14G0076500' => 'sbr', 'SalBow5G2513' => 'sbo', 'Sc01g0002300' => 'sci', 'Sc01g0004450' => 'sci', 'Sc06g0001680' => 'sci', 'Sc23g0003580' => 'sci', 'Sed0000913' => 'sed', 'Sed0001655' => 'sed', 'Sed0007745' => 'sed', 'Sed0010951' => 'sed', 'Sed0017599' => 'sed', 'Sed0021405' => 'sed', 'Sed0022810' => 'sed', 'SEGI_07099' => 'sgi', 'SEGI_11931' => 'sgi', 'SEGI_13187' => 'sgi', 'SEGI_29958' => 'sgi', 'SEGI_36351' => 'sgi', 'SGA_v2.0_scaffold126G33770' => 'sas', 'SGA_v2.0_scaffold153G37003' => 'sas', 'SGA_v2.0_scaffold2G01359' => 'sas', 'SGA_v2.0_scaffold5G03064' => 'sas', 'SGA_v2.0_scaffold95G28903' => 'sas', 'SHI12701' => 'shi', 'SHI26410' => 'shi', 'SHI38997' => 'shi', 'SHI53759' => 'shi', 'SHI53886' => 'shi', 'SHI54714' => 'shi', 'SMO011G0041' => 'smo', 'SMO146G0251' => 'smo', 'SMO160G0004' => 'smo', 'SMO174G0057' => 'smo', 'SMO244G0089' => 'smo', 'SMO296G0011' => 'smo', 'Solyc01g091280.3' => 'sly', 'Solyc05g047610.3' => 'sly', 'Solyc05g047640.3' => 'sly', 'Solyc05g055630.3' => 'sly', 'Solyc10g018160.2' => 'sly', 'Solyc10g084820.2' => 'sly', 'Solyc10g086565.2' => 'sly', 'Sopen01g037030' => 'spe', 'Sopen05g027920' => 'spe', 'Sopen05g034070' => 'spe', 'Sopen10g007260' => 'spe', 'Sopen10g034260' => 'spe', 'Sopen10g035950' => 'spe', 'Sp3g07710' => 'spa', 'Sp4g27420' => 'spa', 'Sp5g02450' => 'spa', 'Sp6g01280' => 'spa', 'Sp6g38480' => 'spa', 'Sp7g20780' => 'spa', 'TAR374G1413' => 'tar', 'TAR623G1777' => 'tar', 'TAR629G2370' => 'tar', 'TAR633G1759' => 'tar', 'TAR636G3387' => 'tar', 'THA.LOC104802447' => 'tha', 'THA.LOC104813916' => 'tha', 'THA.LOC104816423' => 'tha', 'THA.LOC104817246' => 'tha', 'THA.LOC104825895' => 'tha', 'Thecc.01G335200' => 'tca', 'Thecc.01G377400' => 'tca', 'Thecc.03G262200' => 'tca', 'Thecc.05G036800' => 'tca', 'Thecc.10G080500' => 'tca', 'Thecc.10G080800' => 'tca', 'Thhalv10001560m.g' => 'esa', 'Thhalv10006120m.g' => 'esa', 'Thhalv10014375m.g' => 'esa', 'Thhalv10021264m.g' => 'esa', 'Thhalv10028856m.g' => 'esa', 'TPR.G1914' => 'tpr', 'TPR.G4757' => 'tpr', 'TPR.G5595' => 'tpr', 'TWI14G0952' => 'twi', 'TWI14G1307' => 'twi', 'TWI38G2143' => 'twi', 'TWI59G0826' => 'twi', 'TWI77G0527' => 'twi', 'TWI81G0150' => 'twi', 'unitig_21.g21018' => 'ugi', 'unitig_26.g9725' => 'ugi', 'unitig_744.g24653' => 'ugi', 'unitig_749.g13778' => 'ugi', 'unitig_899.g15035' => 'ugi', 'vmacro04296' => 'vma', 'vmacro04852' => 'vma', 'vmacro13404' => 'vma', 'vmacro20169' => 'vma', 'vmacro21014' => 'vma', 'VMungo0331G0237' => 'vmu', 'VMungo0331G0706' => 'vmu', 'VMungo0331G1361' => 'vmu', 'VMungo0331G1489' => 'vmu', 'VMungo0540G1037' => 'vmu', 'VMungo0720G2487' => 'vmu', 'VMungo0720G2721' => 'vmu', 'Zm00001eb086860' => 'zma', 'Zm00001eb104760' => 'zma', 'Zm00001eb148220' => 'zma', 'Zm00001eb259030' => 'zma', 'Zm00001eb289590' => 'zma', 'Zm00001eb420150' => 'zma' ), 'gf_id' => 'HOM05D000968', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000968' ), 'data_identifier' => 'HOM05D000968', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000968', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p31690' => 'bna', 'A03p36040' => 'bna', 'A03p53730' => 'bna', 'A04p01410' => 'bna', 'A05p05420' => 'bna', 'A05p39630' => 'bna', 'A05p39640' => 'bna', 'A09p00970' => 'bna', 'A09p53060' => 'bna', 'A10p31890' => 'bna', 'Aa31LG10G15040' => 'aar', 'Aa31LG1G21090' => 'aar', 'Aa31LG1G26900' => 'aar', 'Aa31LG3G1820' => 'aar', 'Aa31LG5G1100' => 'aar', 'Aa31LG6G4740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2265' => 'aag', 'Actinidia07998' => 'ach', 'Actinidia11266' => 'ach', 'Actinidia12682' => 'ach', 'Actinidia26479' => 'ach', 'Actinidia31406' => 'ach', 'Actinidia32437' => 'ach', 'Actinidia38862' => 'ach', 'Ah.05g174230' => 'amhyb', 'Ah.05g179070' => 'amhyb', 'Ah.05g179090' => 'amhyb', 'Ah.12g059950' => 'amhyb', 'AL3G20480' => 'aly', 'AL4G44520' => 'aly', 'AL5G43110' => 'aly', 'AL6G13890' => 'aly', 'AL6G52620' => 'aly', 'AL7G30830' => 'aly', 'Aqoxy1G00899' => 'aox', 'Aqoxy5G04333' => 'aox', 'Aqoxy7G00641' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3IZ0NN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4EF6AW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W9P8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79GA3M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C43NQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFCU6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G95YVJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCHK29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LU1UG8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX91RN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGB4B1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8DA0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9H7JI' => 'arhy', 'AT3G09320' => 'ath', 'AT3G60800' => 'ath', 'AT4G00840' => 'ath', 'AT4G22750' => 'ath', 'AT5G04270' => 'ath', 'ATR0090G003' => 'atr', 'ATR0559G349' => 'atr', 'ATR0680G261' => 'atr', 'ATR0810G048' => 'atr', 'Atru.chr12.831' => 'acertr', 'Atru.chr5.303' => 'acertr', 'Atru.chr5.748' => 'acertr', 'Atru.chr8.1999' => 'acertr', 'Atru.chr9.1436' => 'acertr', 'AUR62004211' => 'cqu', 'AUR62004548' => 'cqu', 'AUR62013637' => 'cqu', 'AUR62022662' => 'cqu', 'AUR62025777' => 'cqu', 'AUR62042386' => 'cqu', 'BcaB01g02310' => 'bca', 'BcaB01g06062' => 'bca', 'BcaB02g08975' => 'bca', 'BcaB02g08980' => 'bca', 'BcaC01g04228' => 'bca', 'BcaC01g06830' => 'bca', 'BcaC02g10186' => 'bca', 'BcaC02g12214' => 'bca', 'BcaC04g24101' => 'bca', 'BcaC05g29520' => 'bca', 'BcaC05g29661' => 'bca', 'BcaC06g32130' => 'bca', 'BcaC06g32131' => 'bca', 'BcaC07g40601' => 'bca', 'BcaC07g42641' => 'bca', 'BcaNung01038' => 'bca', 'BcaNung01676' => 'bca', 'BcaNung02480' => 'bca', 'BcaNung07376' => 'bca', 'BolC3t16146H' => 'bol', 'BolC3t16637H' => 'bol', 'BolC4t22257H' => 'bol', 'BolC4t24728H' => 'bol', 'BolC5t34517H' => 'bol', 'BolC7t45703H' => 'bol', 'BolC8t51166H' => 'bol', 'BolC9t53038H' => 'bol', 'BolC9t60000H' => 'bol', 'BraA01t01345Z' => 'bra', 'BraA01t01346Z' => 'bra', 'BraA01t01348Z' => 'bra', 'BraA03t12347Z' => 'bra', 'BraA03t12775Z' => 'bra', 'BraA03t14439Z' => 'bra', 'BraA04t15860Z' => 'bra', 'BraA05t19511Z' => 'bra', 'BraA05t22746Z' => 'bra', 'BraA09t35767Z' => 'bra', 'BraA09t40732Z' => 'bra', 'BraA10t45233Z' => 'bra', 'C03p38720' => 'bna', 'C03p43680' => 'bna', 'C04p06350' => 'bna', 'C04p31800' => 'bna', 'C05p58680' => 'bna', 'C07p52110' => 'bna', 'C08p35760' => 'bna', 'C09p01050' => 'bna', 'C09p72600' => 'bna', 'CAN.G106.2' => 'can', 'CAN.G1482.1' => 'can', 'CAN.G324.12' => 'can', 'CAN.G388.20' => 'can', 'CAN.G412.7' => 'can', 'CAN.G694.32' => 'can', 'CAN.G92.12' => 'can', 'CANSAT11G2353' => 'cansat', 'CANSAT21G1398' => 'cansat', 'CANSAT56G2456' => 'cansat', 'CANSAT56G3031' => 'cansat', 'CANSAT56G4539' => 'cansat', 'CARHR083680' => 'chi', 'CARHR171190' => 'chi', 'CARHR209010' => 'chi', 'CARHR229680' => 'chi', 'CARHR249490' => 'chi', 'Carub.0003s0844' => 'cru', 'Carub.0005s2755' => 'cru', 'Carub.0006s0322' => 'cru', 'Carub.0006s3586' => 'cru', 'Carub.0007s1855' => 'cru', 'Ca_07808_v3' => 'car', 'Ca_09535_v3' => 'car', 'Ca_10548_v3' => 'car', 'Ca_19913_v3' => 'car', 'Ca_19916_v3' => 'car', 'Ca_19975_v3' => 'car', 'CBR_g22876' => 'cbr', 'CBR_g22879' => 'cbr', 'CBR_g38491' => 'cbr', 'CBR_g54185' => 'cbr', 'CBR_g54190' => 'cbr', 'Cc02_g11020' => 'ccan', 'Cc02_g23920' => 'ccan', 'Cc02_g39860' => 'ccan', 'Cc02_g39870' => 'ccan', 'Cc03_g06760' => 'ccan', 'Cc06_g02450' => 'ccan', 'Cc09_g09450' => 'ccan', 'CDE02G1959' => 'cde', 'CDE04G0600' => 'cde', 'CDE07G1996' => 'cde', 'CDE07G2078' => 'cde', 'CDE11G0611' => 'cde', 'Cfa001683' => 'cfa', 'Cfa001734' => 'cfa', 'Cfa001737' => 'cfa', 'Cfa003751' => 'cfa', 'Cfa012019' => 'cfa', 'Cfa017353' => 'cfa', 'Cfa017732' => 'cfa', 'Cfa022464' => 'cfa', 'Ciclev10012400m.g' => 'ccl', 'Ciclev10021242m.g' => 'ccl', 'Ciclev10021302m.g' => 'ccl', 'Ciclev10021463m.g' => 'ccl', 'Ciclev10032359m.g' => 'ccl', 'CiPaw.01G081000' => 'cil', 'CiPaw.01G262500' => 'cil', 'CiPaw.01G269800' => 'cil', 'CiPaw.02G168400' => 'cil', 'CiPaw.05G119500' => 'cil', 'CiPaw.11G147300' => 'cil', 'ClCG01G003630' => 'cla', 'ClCG05G000510' => 'cla', 'ClCG05G002300' => 'cla', 'ClCG08G007650' => 'cla', 'ClCG10G021250' => 'cla', 'COL.COLO4_06218' => 'col', 'COL.COLO4_12538' => 'col', 'COL.COLO4_14775' => 'col', 'COL.COLO4_23875' => 'col', 'Cpa.g.sc141.16' => 'cpa', 'Cpa.g.sc169.16' => 'cpa', 'Cpa.g.sc244.4' => 'cpa', 'Cpa.g.sc244.5' => 'cpa', 'Cpa.g.sc29.87' => 'cpa', 'Cpa.g.sc53.115' => 'cpa', 'Cre03.g207502' => 'cre', 'Cre06.g277000' => 'cre', 'Cre09.g394050' => 'cre', 'CsaV3_3G007680' => 'csa', 'CsaV3_3G009710' => 'csa', 'CsaV3_3G034790' => 'csa', 'CsaV3_5G003750' => 'csa', 'CsaV3_6G036620' => 'csa', 'CSS0002288' => 'camsi', 'CSS0011250' => 'camsi', 'CSS0021619' => 'camsi', 'CSS0046701' => 'camsi', 'DCAR_006420' => 'dca', 'DCAR_006865' => 'dca', 'DCAR_008558' => 'dca', 'DCAR_028754' => 'dca', 'DCAR_028755' => 'dca', 'Dinv31218' => 'din', 'Dinv32371' => 'din', 'Dinv34250' => 'din', 'Dinv37156' => 'din', 'Dinv43704' => 'din', 'Duzib093G1811' => 'dzi', 'Duzib106G1622' => 'dzi', 'Duzib114G0504' => 'dzi', 'Duzib128G0338' => 'dzi', 'Duzib128G1577' => 'dzi', 'Duzib133G0104' => 'dzi', 'Duzib133G1080' => 'dzi', 'Duzib138G0324' => 'dzi', 'Duzib138G0394' => 'dzi', 'Duzib205G0122' => 'dzi', 'Duzib268G1020' => 'dzi', 'Duzib268G1359' => 'dzi', 'ECA232G3929' => 'eca', 'ECA236G2210' => 'eca', 'ECA236G2287' => 'eca', 'ECA240G4568' => 'eca', 'ECA247G0894' => 'eca', 'EL10Ac1g00200' => 'bvu', 'EL10Ac1g00886' => 'bvu', 'EL10As1g23091' => 'bvu', 'EL10As1g23092' => 'bvu', 'Eucgr.A01284' => 'egr', 'Eucgr.A01285' => 'egr', 'Eucgr.D02456' => 'egr', 'Eucgr.E00018' => 'egr', 'Eucgr.E01439' => 'egr', 'Eucgr.G02859' => 'egr', 'FAN01G0168' => 'fan', 'FAN01G0453' => 'fan', 'FAN01G2761' => 'fan', 'FAN02G1239' => 'fan', 'FAN03G0645' => 'fan', 'FAN03G2707' => 'fan', 'FAN03G2978' => 'fan', 'FAN04G0227' => 'fan', 'FAN06G0091' => 'fan', 'FAN06G1418' => 'fan', 'FAN06G1512' => 'fan', 'FAN06G1986' => 'fan', 'FAN06G2905' => 'fan', 'FAN06G4325' => 'fan', 'FAN08G0033' => 'fan', 'FAN09G0642' => 'fan', 'FAN10G1763' => 'fan', 'FAN10G2026' => 'fan', 'FAN10G2513' => 'fan', 'FAN10G3402' => 'fan', 'FAN10G3564' => 'fan', 'FAN10G3987' => 'fan', 'FAN13G1490' => 'fan', 'FAN14G5857' => 'fan', 'FAN18G1188' => 'fan', 'FvH4_5g00750' => 'fve', 'FvH4_6g13410' => 'fve', 'FvH4_7g11740' => 'fve', 'FvH4_7g17410' => 'fve', 'FvH4_7g18860' => 'fve', 'Glyma.01G099100' => 'gma', 'Glyma.01G142300' => 'gma', 'Glyma.03G025500' => 'gma', 'Glyma.03G069700' => 'gma', 'Glyma.03G260000' => 'gma', 'Glyma.09G269800' => 'gma', 'Glyma.10G208700' => 'gma', 'Glyma.18G220400' => 'gma', 'Glyma.20G182000' => 'gma', 'Gohir.A01G221726' => 'ghi', 'Gohir.A07G134600' => 'ghi', 'Gohir.A07G146000' => 'ghi', 'Gohir.A08G173900' => 'ghi', 'Gohir.A09G194900' => 'ghi', 'Gohir.A10G204100' => 'ghi', 'Gohir.A11G080600' => 'ghi', 'Gohir.A11G327500' => 'ghi', 'Gohir.A12G101800' => 'ghi', 'Gohir.D01G211200' => 'ghi', 'Gohir.D07G139200' => 'ghi', 'Gohir.D07G152100' => 'ghi', 'Gohir.D08G192600' => 'ghi', 'Gohir.D09G189200' => 'ghi', 'Gohir.D10G212000' => 'ghi', 'Gohir.D11G085200' => 'ghi', 'Gohir.D11G346400' => 'ghi', 'Gohir.D12G104800' => 'ghi', 'Gorai.001G151300' => 'gra', 'Gorai.001G174100' => 'gra', 'Gorai.002G257000' => 'gra', 'Gorai.004G202600' => 'gra', 'Gorai.007G090900' => 'gra', 'Gorai.007G376700' => 'gra', 'Gorai.008G114100' => 'gra', 'Gorai.011G237900' => 'gra', 'GSVIVG01005450001' => 'vvi', 'GSVIVG01016232001' => 'vvi', 'GSVIVG01026157001' => 'vvi', 'GSVIVG01027419001' => 'vvi', 'GSVIVG01027631001' => 'vvi', 'GSVIVG01034143001' => 'vvi', 'HanXRQChr03g0093921' => 'han', 'HanXRQChr04g0120001' => 'han', 'HanXRQChr04g0122561' => 'han', 'HanXRQChr09g0246851' => 'han', 'HanXRQChr10g0293311' => 'han', 'HanXRQChr13g0425231' => 'han', 'HanXRQChr16g0532571' => 'han', 'Haze_09050' => 'cav', 'Haze_15715' => 'cav', 'Haze_15716' => 'cav', 'Haze_16803' => 'cav', 'Haze_16850' => 'cav', 'Hma1.2p1_0301F.1_g118655' => 'hma', 'Hma1.2p1_0309F.1_g120590' => 'hma', 'Hma1.2p1_0936F.1_g238900' => 'hma', 'Hma1.2p1_3552F.1_g336740' => 'hma', 'HPP92_003520' => 'vpl', 'HPP92_006628' => 'vpl', 'HPP92_006645' => 'vpl', 'HPP92_014669' => 'vpl', 'HPP92_015077' => 'vpl', 'Hund16742' => 'sun', 'Hund17022' => 'sun', 'Lalb_Chr02g0152131' => 'lal', 'Lalb_Chr05g0225371' => 'lal', 'Lalb_Chr07g0189841' => 'lal', 'Lalb_Chr07g0192961' => 'lal', 'Lalb_Chr12g0208221' => 'lal', 'Lalb_Chr13g0291211' => 'lal', 'Lalb_Chr13g0291781' => 'lal', 'Lalb_Chr18g0044651' => 'lal', 'Lalb_Chr21g0313731' => 'lal', 'Lj1g0022533' => 'lja', 'Lj2A18T50' => 'lonja', 'Lj2A92G93' => 'lonja', 'Lj3A965T73' => 'lonja', 'Lj3g0000673' => 'lja', 'Lj3g0002666' => 'lja', 'Lj4g0016985' => 'lja', 'Lj5g0003625' => 'lja', 'Lj7A529G36' => 'lonja', 'Lj9A569T49' => 'lonja', 'Lj9A604T63' => 'lonja', 'Lsat_1_v5_gn_3_132060' => 'lsa', 'Lsat_1_v5_gn_4_68941' => 'lsa', 'Lsat_1_v5_gn_5_95580' => 'lsa', 'Lsat_1_v5_gn_7_161' => 'lsa', 'Lsat_1_v5_gn_7_7041' => 'lsa', 'Lsat_1_v5_gn_9_33481' => 'lsa', 'Lsat_1_v5_gn_9_68260' => 'lsa', 'Manes.01G073100' => 'mes', 'Manes.01G266300' => 'mes', 'Manes.02G033300' => 'mes', 'Manes.05G017900' => 'mes', 'Manes.05G046100' => 'mes', 'Manes.08G080900' => 'mes', 'Manes.10G049400' => 'mes', 'Mapoly0009s0186' => 'mpo', 'Mapoly0036s0118' => 'mpo', 'Mapoly0101s0046' => 'mpo', 'MBI04_g30218_MAGBIO' => 'mbi', 'MBI04_g35564_MAGBIO' => 'mbi', 'MBI12_g34011_MAGBIO' => 'mbi', 'MBI14_g04655_MAGBIO' => 'mbi', 'MCO07G653' => 'mco', 'MCO10G173' => 'mco', 'MD01G1087100' => 'mdo', 'MD01G1104200' => 'mdo', 'MD02G1205100' => 'mdo', 'MD04G1079200' => 'mdo', 'MD04G1131400' => 'mdo', 'MD07G1121600' => 'mdo', 'MD07G1157300' => 'mdo', 'MD07G1171000' => 'mdo', 'MD12G1144500' => 'mdo', 'Medtr1g094610' => 'mtr', 'Medtr4g021795' => 'mtr', 'Medtr4g023760' => 'mtr', 'Medtr7g118050' => 'mtr', 'MELO3C005582.2' => 'cme', 'MELO3C005989.2' => 'cme', 'MELO3C006192.2' => 'cme', 'MELO3C009248.2' => 'cme', 'MELO3C019817.2' => 'cme', 'Migut.B01625' => 'egut', 'Migut.B01915' => 'egut', 'Migut.F01721' => 'egut', 'Migut.J00314' => 'egut', 'MSTRG.20742' => 'ama', 'MSTRG.8134' => 'ama', 'Nitab4.5_0000096g0010' => 'nta', 'Nitab4.5_0000202g0030' => 'nta', 'Nitab4.5_0000216g0370' => 'nta', 'Nitab4.5_0000457g0230' => 'nta', 'Nitab4.5_0001702g0170' => 'nta', 'Nitab4.5_0003607g0010' => 'nta', 'Nitab4.5_0004917g0020' => 'nta', 'Nitab4.5_0007059g0010' => 'nta', 'Nitab4.5_0007184g0010' => 'nta', 'Nitab4.5_0007346g0020' => 'nta', 'Nn1g00410' => 'nnu', 'Nn1g01252' => 'nnu', 'Nn2g11168' => 'nnu', 'Nn2g13403' => 'nnu', 'Nn2g13760' => 'nnu', 'Nn4g26380' => 'nnu', 'Oeu000806.2' => 'oeu', 'Oeu005788.1' => 'oeu', 'Oeu006900.3' => 'oeu', 'Oeu007797.1' => 'oeu', 'Oeu011932.1' => 'oeu', 'Oeu022739.1' => 'oeu', 'Oeu037918.1' => 'oeu', 'Oeu055490.2' => 'oeu', 'Os01g0844400' => 'osa', 'Os02g0819100' => 'osa', 'Os03g0804300' => 'osa', 'Os05g0458000' => 'osa', 'Os07g0467800' => 'osa', 'Os12g0602200' => 'osa', 'Peaxi162Scf00013g03444' => 'pax', 'Peaxi162Scf00094g01120' => 'pax', 'Peaxi162Scf00191g01211' => 'pax', 'Peaxi162Scf00238g01110' => 'pax', 'Peaxi162Scf00330g00719' => 'pax', 'Peaxi162Scf00627g00018' => 'pax', 'PGR031G2686' => 'pgr', 'PGR042G0809' => 'pgr', 'PGR142G0193' => 'pgr', 'PGSC0003DMG400011066' => 'stu', 'PGSC0003DMG400012041' => 'stu', 'PGSC0003DMG400013678' => 'stu', 'PGSC0003DMG400023477' => 'stu', 'PGSC0003DMG400025956' => 'stu', 'PGSC0003DMG401019151' => 'stu', 'Phvul.006G116400' => 'pvu', 'Phvul.007G097300' => 'pvu', 'Phvul.010G015000' => 'pvu', 'Phvul.010G083900' => 'pvu', 'Potri.001G117100' => 'ptr', 'Potri.002G147300' => 'ptr', 'Potri.003G115600' => 'ptr', 'Potri.006G087400' => 'ptr', 'Potri.010G226100' => 'ptr', 'Potri.014G069200' => 'ptr', 'Potri.014G104000' => 'ptr', 'Potri.016G100200' => 'ptr', 'Pp3c10_20450' => 'ppa', 'Pp3c1_42400' => 'ppa', 'Pp3c3_24390' => 'ppa', 'Pp3c3_2860' => 'ppa', 'PRCOL_00003193' => 'pco', 'Prupe.2G144500' => 'ppe', 'Prupe.2G195700' => 'ppe', 'Prupe.2G209800' => 'ppe', 'Prupe.5G080000' => 'ppe', 'Prupe.6G257900' => 'ppe', 'Psat3g001160' => 'psa', 'Psat6g181880' => 'psa', 'Psat7g233720' => 'psa', 'PSO063G7587' => 'pso', 'PSO339G2145' => 'pso', 'PSO339G3369' => 'pso', 'PSO478G2747' => 'pso', 'PSO513G0140' => 'pso', 'PSO782G1614' => 'pso', 'PSO782G4889' => 'pso', 'PSO782G5485' => 'pso', 'PSO801G0241' => 'pso', 'QL07p048854' => 'qlo', 'QL08p046745' => 'qlo', 'QL08p052606' => 'qlo', 'QL08p053414' => 'qlo', 'QL08p054868' => 'qlo', 'RcHm_v2.0_Chr1g0350251' => 'rch', 'RcHm_v2.0_Chr1g0360851' => 'rch', 'RcHm_v2.0_Chr1g0362791' => 'rch', 'RcHm_v2.0_Chr3g0466281' => 'rch', 'RcHm_v2.0_Chr7g0201481' => 'rch', 'Rhsim01G0148600' => 'rsi', 'Rhsim05G0194400' => 'rsi', 'Rhsim07G0000700' => 'rsi', 'Rhsim07G0000800' => 'rsi', 'Rhsim07G0027900' => 'rsi', 'Rhsim09G0149500' => 'rsi', 'RhsimUnG0186900' => 'rsi', 'Sabra01G0089900' => 'sbr', 'Sabra02G0114700' => 'sbr', 'Sabra02G0116300' => 'sbr', 'Sabra03G0080100' => 'sbr', 'Sabra08G0024300' => 'sbr', 'Sabra10G0174300' => 'sbr', 'Sabra14G0048900' => 'sbr', 'Sabra14G0076500' => 'sbr', 'SalBow5G2513' => 'sbo', 'Sc01g0002300' => 'sci', 'Sc01g0004450' => 'sci', 'Sc06g0001680' => 'sci', 'Sc23g0003580' => 'sci', 'Sed0000913' => 'sed', 'Sed0001655' => 'sed', 'Sed0007745' => 'sed', 'Sed0010951' => 'sed', 'Sed0017599' => 'sed', 'Sed0021405' => 'sed', 'Sed0022810' => 'sed', 'SEGI_07099' => 'sgi', 'SEGI_11931' => 'sgi', 'SEGI_13187' => 'sgi', 'SEGI_29958' => 'sgi', 'SEGI_36351' => 'sgi', 'SGA_v2.0_scaffold126G33770' => 'sas', 'SGA_v2.0_scaffold153G37003' => 'sas', 'SGA_v2.0_scaffold2G01359' => 'sas', 'SGA_v2.0_scaffold5G03064' => 'sas', 'SGA_v2.0_scaffold95G28903' => 'sas', 'SHI12701' => 'shi', 'SHI26410' => 'shi', 'SHI38997' => 'shi', 'SHI53759' => 'shi', 'SHI53886' => 'shi', 'SHI54714' => 'shi', 'SMO011G0041' => 'smo', 'SMO146G0251' => 'smo', 'SMO160G0004' => 'smo', 'SMO174G0057' => 'smo', 'SMO244G0089' => 'smo', 'SMO296G0011' => 'smo', 'Solyc01g091280.3' => 'sly', 'Solyc05g047610.3' => 'sly', 'Solyc05g047640.3' => 'sly', 'Solyc05g055630.3' => 'sly', 'Solyc10g018160.2' => 'sly', 'Solyc10g084820.2' => 'sly', 'Solyc10g086565.2' => 'sly', 'Sopen01g037030' => 'spe', 'Sopen05g027920' => 'spe', 'Sopen05g034070' => 'spe', 'Sopen10g007260' => 'spe', 'Sopen10g034260' => 'spe', 'Sopen10g035950' => 'spe', 'Sp3g07710' => 'spa', 'Sp4g27420' => 'spa', 'Sp5g02450' => 'spa', 'Sp6g01280' => 'spa', 'Sp6g38480' => 'spa', 'Sp7g20780' => 'spa', 'TAR374G1413' => 'tar', 'TAR623G1777' => 'tar', 'TAR629G2370' => 'tar', 'TAR633G1759' => 'tar', 'TAR636G3387' => 'tar', 'THA.LOC104802447' => 'tha', 'THA.LOC104813916' => 'tha', 'THA.LOC104816423' => 'tha', 'THA.LOC104817246' => 'tha', 'THA.LOC104825895' => 'tha', 'Thecc.01G335200' => 'tca', 'Thecc.01G377400' => 'tca', 'Thecc.03G262200' => 'tca', 'Thecc.05G036800' => 'tca', 'Thecc.10G080500' => 'tca', 'Thecc.10G080800' => 'tca', 'Thhalv10001560m.g' => 'esa', 'Thhalv10006120m.g' => 'esa', 'Thhalv10014375m.g' => 'esa', 'Thhalv10021264m.g' => 'esa', 'Thhalv10028856m.g' => 'esa', 'TPR.G1914' => 'tpr', 'TPR.G4757' => 'tpr', 'TPR.G5595' => 'tpr', 'TWI14G0952' => 'twi', 'TWI14G1307' => 'twi', 'TWI38G2143' => 'twi', 'TWI59G0826' => 'twi', 'TWI77G0527' => 'twi', 'TWI81G0150' => 'twi', 'unitig_21.g21018' => 'ugi', 'unitig_26.g9725' => 'ugi', 'unitig_744.g24653' => 'ugi', 'unitig_749.g13778' => 'ugi', 'unitig_899.g15035' => 'ugi', 'vmacro04296' => 'vma', 'vmacro04852' => 'vma', 'vmacro13404' => 'vma', 'vmacro20169' => 'vma', 'vmacro21014' => 'vma', 'VMungo0331G0237' => 'vmu', 'VMungo0331G0706' => 'vmu', 'VMungo0331G1361' => 'vmu', 'VMungo0331G1489' => 'vmu', 'VMungo0540G1037' => 'vmu', 'VMungo0720G2487' => 'vmu', 'VMungo0720G2721' => 'vmu', 'Zm00001eb086860' => 'zma', 'Zm00001eb104760' => 'zma', 'Zm00001eb148220' => 'zma', 'Zm00001eb259030' => 'zma', 'Zm00001eb289590' => 'zma', 'Zm00001eb420150' => 'zma' ) $gf_id = 'HOM05D000968' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000968' ) $data_identifier = 'HOM05D000968' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 19, 'bol' => (int) 9, 'bra' => (int) 12, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 5, 'ccan' => (int) 7, 'cde' => (int) 5, 'cfa' => (int) 8, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 4, 'dca' => (int) 5, 'din' => (int) 5, 'dzi' => (int) 12, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 25, 'fve' => (int) 5, 'gma' => (int) 9, 'ghi' => (int) 18, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 7, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 5, 'sun' => (int) 2, 'lal' => (int) 9, 'lja' => (int) 5, 'lonja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 9, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 2, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 3, 'stu' => (int) 6, 'pvu' => (int) 4, 'ptr' => (int) 8, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 3, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 1, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 5, 'sas' => (int) 5, 'shi' => (int) 6, 'smo' => (int) 6, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 3, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420150' $species_info = array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ) $local_species = 'pvu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000968', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p31690' => 'bna', 'A03p36040' => 'bna', 'A03p53730' => 'bna', 'A04p01410' => 'bna', 'A05p05420' => 'bna', 'A05p39630' => 'bna', 'A05p39640' => 'bna', 'A09p00970' => 'bna', 'A09p53060' => 'bna', 'A10p31890' => 'bna', 'Aa31LG10G15040' => 'aar', 'Aa31LG1G21090' => 'aar', 'Aa31LG1G26900' => 'aar', 'Aa31LG3G1820' => 'aar', 'Aa31LG5G1100' => 'aar', 'Aa31LG6G4740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2265' => 'aag', 'Actinidia07998' => 'ach', 'Actinidia11266' => 'ach', 'Actinidia12682' => 'ach', 'Actinidia26479' => 'ach', 'Actinidia31406' => 'ach', 'Actinidia32437' => 'ach', 'Actinidia38862' => 'ach', 'Ah.05g174230' => 'amhyb', 'Ah.05g179070' => 'amhyb', 'Ah.05g179090' => 'amhyb', 'Ah.12g059950' => 'amhyb', 'AL3G20480' => 'aly', 'AL4G44520' => 'aly', 'AL5G43110' => 'aly', 'AL6G13890' => 'aly', 'AL6G52620' => 'aly', 'AL7G30830' => 'aly', 'Aqoxy1G00899' => 'aox', 'Aqoxy5G04333' => 'aox', 'Aqoxy7G00641' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3IZ0NN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4EF6AW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W9P8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79GA3M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C43NQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFCU6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G95YVJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCHK29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LU1UG8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX91RN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGB4B1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8DA0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9H7JI' => 'arhy', 'AT3G09320' => 'ath', 'AT3G60800' => 'ath', 'AT4G00840' => 'ath', 'AT4G22750' => 'ath', 'AT5G04270' => 'ath', 'ATR0090G003' => 'atr', 'ATR0559G349' => 'atr', 'ATR0680G261' => 'atr', 'ATR0810G048' => 'atr', 'Atru.chr12.831' => 'acertr', 'Atru.chr5.303' => 'acertr', 'Atru.chr5.748' => 'acertr', 'Atru.chr8.1999' => 'acertr', 'Atru.chr9.1436' => 'acertr', 'AUR62004211' => 'cqu', 'AUR62004548' => 'cqu', 'AUR62013637' => 'cqu', 'AUR62022662' => 'cqu', 'AUR62025777' => 'cqu', 'AUR62042386' => 'cqu', 'BcaB01g02310' => 'bca', 'BcaB01g06062' => 'bca', 'BcaB02g08975' => 'bca', 'BcaB02g08980' => 'bca', 'BcaC01g04228' => 'bca', 'BcaC01g06830' => 'bca', 'BcaC02g10186' => 'bca', 'BcaC02g12214' => 'bca', 'BcaC04g24101' => 'bca', 'BcaC05g29520' => 'bca', 'BcaC05g29661' => 'bca', 'BcaC06g32130' => 'bca', 'BcaC06g32131' => 'bca', 'BcaC07g40601' => 'bca', 'BcaC07g42641' => 'bca', 'BcaNung01038' => 'bca', 'BcaNung01676' => 'bca', 'BcaNung02480' => 'bca', 'BcaNung07376' => 'bca', 'BolC3t16146H' => 'bol', 'BolC3t16637H' => 'bol', 'BolC4t22257H' => 'bol', 'BolC4t24728H' => 'bol', 'BolC5t34517H' => 'bol', 'BolC7t45703H' => 'bol', 'BolC8t51166H' => 'bol', 'BolC9t53038H' => 'bol', 'BolC9t60000H' => 'bol', 'BraA01t01345Z' => 'bra', 'BraA01t01346Z' => 'bra', 'BraA01t01348Z' => 'bra', 'BraA03t12347Z' => 'bra', 'BraA03t12775Z' => 'bra', 'BraA03t14439Z' => 'bra', 'BraA04t15860Z' => 'bra', 'BraA05t19511Z' => 'bra', 'BraA05t22746Z' => 'bra', 'BraA09t35767Z' => 'bra', 'BraA09t40732Z' => 'bra', 'BraA10t45233Z' => 'bra', 'C03p38720' => 'bna', 'C03p43680' => 'bna', 'C04p06350' => 'bna', 'C04p31800' => 'bna', 'C05p58680' => 'bna', 'C07p52110' => 'bna', 'C08p35760' => 'bna', 'C09p01050' => 'bna', 'C09p72600' => 'bna', 'CAN.G106.2' => 'can', 'CAN.G1482.1' => 'can', 'CAN.G324.12' => 'can', 'CAN.G388.20' => 'can', 'CAN.G412.7' => 'can', 'CAN.G694.32' => 'can', 'CAN.G92.12' => 'can', 'CANSAT11G2353' => 'cansat', 'CANSAT21G1398' => 'cansat', 'CANSAT56G2456' => 'cansat', 'CANSAT56G3031' => 'cansat', 'CANSAT56G4539' => 'cansat', 'CARHR083680' => 'chi', 'CARHR171190' => 'chi', 'CARHR209010' => 'chi', 'CARHR229680' => 'chi', 'CARHR249490' => 'chi', 'Carub.0003s0844' => 'cru', 'Carub.0005s2755' => 'cru', 'Carub.0006s0322' => 'cru', 'Carub.0006s3586' => 'cru', 'Carub.0007s1855' => 'cru', 'Ca_07808_v3' => 'car', 'Ca_09535_v3' => 'car', 'Ca_10548_v3' => 'car', 'Ca_19913_v3' => 'car', 'Ca_19916_v3' => 'car', 'Ca_19975_v3' => 'car', 'CBR_g22876' => 'cbr', 'CBR_g22879' => 'cbr', 'CBR_g38491' => 'cbr', 'CBR_g54185' => 'cbr', 'CBR_g54190' => 'cbr', 'Cc02_g11020' => 'ccan', 'Cc02_g23920' => 'ccan', 'Cc02_g39860' => 'ccan', 'Cc02_g39870' => 'ccan', 'Cc03_g06760' => 'ccan', 'Cc06_g02450' => 'ccan', 'Cc09_g09450' => 'ccan', 'CDE02G1959' => 'cde', 'CDE04G0600' => 'cde', 'CDE07G1996' => 'cde', 'CDE07G2078' => 'cde', 'CDE11G0611' => 'cde', 'Cfa001683' => 'cfa', 'Cfa001734' => 'cfa', 'Cfa001737' => 'cfa', 'Cfa003751' => 'cfa', 'Cfa012019' => 'cfa', 'Cfa017353' => 'cfa', 'Cfa017732' => 'cfa', 'Cfa022464' => 'cfa', 'Ciclev10012400m.g' => 'ccl', 'Ciclev10021242m.g' => 'ccl', 'Ciclev10021302m.g' => 'ccl', 'Ciclev10021463m.g' => 'ccl', 'Ciclev10032359m.g' => 'ccl', 'CiPaw.01G081000' => 'cil', 'CiPaw.01G262500' => 'cil', 'CiPaw.01G269800' => 'cil', 'CiPaw.02G168400' => 'cil', 'CiPaw.05G119500' => 'cil', 'CiPaw.11G147300' => 'cil', 'ClCG01G003630' => 'cla', 'ClCG05G000510' => 'cla', 'ClCG05G002300' => 'cla', 'ClCG08G007650' => 'cla', 'ClCG10G021250' => 'cla', 'COL.COLO4_06218' => 'col', 'COL.COLO4_12538' => 'col', 'COL.COLO4_14775' => 'col', 'COL.COLO4_23875' => 'col', 'Cpa.g.sc141.16' => 'cpa', 'Cpa.g.sc169.16' => 'cpa', 'Cpa.g.sc244.4' => 'cpa', 'Cpa.g.sc244.5' => 'cpa', 'Cpa.g.sc29.87' => 'cpa', 'Cpa.g.sc53.115' => 'cpa', 'Cre03.g207502' => 'cre', 'Cre06.g277000' => 'cre', 'Cre09.g394050' => 'cre', 'CsaV3_3G007680' => 'csa', 'CsaV3_3G009710' => 'csa', 'CsaV3_3G034790' => 'csa', 'CsaV3_5G003750' => 'csa', 'CsaV3_6G036620' => 'csa', 'CSS0002288' => 'camsi', 'CSS0011250' => 'camsi', 'CSS0021619' => 'camsi', 'CSS0046701' => 'camsi', 'DCAR_006420' => 'dca', 'DCAR_006865' => 'dca', 'DCAR_008558' => 'dca', 'DCAR_028754' => 'dca', 'DCAR_028755' => 'dca', 'Dinv31218' => 'din', 'Dinv32371' => 'din', 'Dinv34250' => 'din', 'Dinv37156' => 'din', 'Dinv43704' => 'din', 'Duzib093G1811' => 'dzi', 'Duzib106G1622' => 'dzi', 'Duzib114G0504' => 'dzi', 'Duzib128G0338' => 'dzi', 'Duzib128G1577' => 'dzi', 'Duzib133G0104' => 'dzi', 'Duzib133G1080' => 'dzi', 'Duzib138G0324' => 'dzi', 'Duzib138G0394' => 'dzi', 'Duzib205G0122' => 'dzi', 'Duzib268G1020' => 'dzi', 'Duzib268G1359' => 'dzi', 'ECA232G3929' => 'eca', 'ECA236G2210' => 'eca', 'ECA236G2287' => 'eca', 'ECA240G4568' => 'eca', 'ECA247G0894' => 'eca', 'EL10Ac1g00200' => 'bvu', 'EL10Ac1g00886' => 'bvu', 'EL10As1g23091' => 'bvu', 'EL10As1g23092' => 'bvu', 'Eucgr.A01284' => 'egr', 'Eucgr.A01285' => 'egr', 'Eucgr.D02456' => 'egr', 'Eucgr.E00018' => 'egr', 'Eucgr.E01439' => 'egr', 'Eucgr.G02859' => 'egr', 'FAN01G0168' => 'fan', 'FAN01G0453' => 'fan', 'FAN01G2761' => 'fan', 'FAN02G1239' => 'fan', 'FAN03G0645' => 'fan', 'FAN03G2707' => 'fan', 'FAN03G2978' => 'fan', 'FAN04G0227' => 'fan', 'FAN06G0091' => 'fan', 'FAN06G1418' => 'fan', 'FAN06G1512' => 'fan', 'FAN06G1986' => 'fan', 'FAN06G2905' => 'fan', 'FAN06G4325' => 'fan', 'FAN08G0033' => 'fan', 'FAN09G0642' => 'fan', 'FAN10G1763' => 'fan', 'FAN10G2026' => 'fan', 'FAN10G2513' => 'fan', 'FAN10G3402' => 'fan', 'FAN10G3564' => 'fan', 'FAN10G3987' => 'fan', 'FAN13G1490' => 'fan', 'FAN14G5857' => 'fan', 'FAN18G1188' => 'fan', 'FvH4_5g00750' => 'fve', 'FvH4_6g13410' => 'fve', 'FvH4_7g11740' => 'fve', 'FvH4_7g17410' => 'fve', 'FvH4_7g18860' => 'fve', 'Glyma.01G099100' => 'gma', 'Glyma.01G142300' => 'gma', 'Glyma.03G025500' => 'gma', 'Glyma.03G069700' => 'gma', 'Glyma.03G260000' => 'gma', 'Glyma.09G269800' => 'gma', 'Glyma.10G208700' => 'gma', 'Glyma.18G220400' => 'gma', 'Glyma.20G182000' => 'gma', 'Gohir.A01G221726' => 'ghi', 'Gohir.A07G134600' => 'ghi', 'Gohir.A07G146000' => 'ghi', 'Gohir.A08G173900' => 'ghi', 'Gohir.A09G194900' => 'ghi', 'Gohir.A10G204100' => 'ghi', 'Gohir.A11G080600' => 'ghi', 'Gohir.A11G327500' => 'ghi', 'Gohir.A12G101800' => 'ghi', 'Gohir.D01G211200' => 'ghi', 'Gohir.D07G139200' => 'ghi', 'Gohir.D07G152100' => 'ghi', 'Gohir.D08G192600' => 'ghi', 'Gohir.D09G189200' => 'ghi', 'Gohir.D10G212000' => 'ghi', 'Gohir.D11G085200' => 'ghi', 'Gohir.D11G346400' => 'ghi', 'Gohir.D12G104800' => 'ghi', 'Gorai.001G151300' => 'gra', 'Gorai.001G174100' => 'gra', 'Gorai.002G257000' => 'gra', 'Gorai.004G202600' => 'gra', 'Gorai.007G090900' => 'gra', 'Gorai.007G376700' => 'gra', 'Gorai.008G114100' => 'gra', 'Gorai.011G237900' => 'gra', 'GSVIVG01005450001' => 'vvi', 'GSVIVG01016232001' => 'vvi', 'GSVIVG01026157001' => 'vvi', 'GSVIVG01027419001' => 'vvi', 'GSVIVG01027631001' => 'vvi', 'GSVIVG01034143001' => 'vvi', 'HanXRQChr03g0093921' => 'han', 'HanXRQChr04g0120001' => 'han', 'HanXRQChr04g0122561' => 'han', 'HanXRQChr09g0246851' => 'han', 'HanXRQChr10g0293311' => 'han', 'HanXRQChr13g0425231' => 'han', 'HanXRQChr16g0532571' => 'han', 'Haze_09050' => 'cav', 'Haze_15715' => 'cav', 'Haze_15716' => 'cav', 'Haze_16803' => 'cav', 'Haze_16850' => 'cav', 'Hma1.2p1_0301F.1_g118655' => 'hma', 'Hma1.2p1_0309F.1_g120590' => 'hma', 'Hma1.2p1_0936F.1_g238900' => 'hma', 'Hma1.2p1_3552F.1_g336740' => 'hma', 'HPP92_003520' => 'vpl', 'HPP92_006628' => 'vpl', 'HPP92_006645' => 'vpl', 'HPP92_014669' => 'vpl', 'HPP92_015077' => 'vpl', 'Hund16742' => 'sun', 'Hund17022' => 'sun', 'Lalb_Chr02g0152131' => 'lal', 'Lalb_Chr05g0225371' => 'lal', 'Lalb_Chr07g0189841' => 'lal', 'Lalb_Chr07g0192961' => 'lal', 'Lalb_Chr12g0208221' => 'lal', 'Lalb_Chr13g0291211' => 'lal', 'Lalb_Chr13g0291781' => 'lal', 'Lalb_Chr18g0044651' => 'lal', 'Lalb_Chr21g0313731' => 'lal', 'Lj1g0022533' => 'lja', 'Lj2A18T50' => 'lonja', 'Lj2A92G93' => 'lonja', 'Lj3A965T73' => 'lonja', 'Lj3g0000673' => 'lja', 'Lj3g0002666' => 'lja', 'Lj4g0016985' => 'lja', 'Lj5g0003625' => 'lja', 'Lj7A529G36' => 'lonja', 'Lj9A569T49' => 'lonja', 'Lj9A604T63' => 'lonja', 'Lsat_1_v5_gn_3_132060' => 'lsa', 'Lsat_1_v5_gn_4_68941' => 'lsa', 'Lsat_1_v5_gn_5_95580' => 'lsa', 'Lsat_1_v5_gn_7_161' => 'lsa', 'Lsat_1_v5_gn_7_7041' => 'lsa', 'Lsat_1_v5_gn_9_33481' => 'lsa', 'Lsat_1_v5_gn_9_68260' => 'lsa', 'Manes.01G073100' => 'mes', 'Manes.01G266300' => 'mes', 'Manes.02G033300' => 'mes', 'Manes.05G017900' => 'mes', 'Manes.05G046100' => 'mes', 'Manes.08G080900' => 'mes', 'Manes.10G049400' => 'mes', 'Mapoly0009s0186' => 'mpo', 'Mapoly0036s0118' => 'mpo', 'Mapoly0101s0046' => 'mpo', 'MBI04_g30218_MAGBIO' => 'mbi', 'MBI04_g35564_MAGBIO' => 'mbi', 'MBI12_g34011_MAGBIO' => 'mbi', 'MBI14_g04655_MAGBIO' => 'mbi', 'MCO07G653' => 'mco', 'MCO10G173' => 'mco', 'MD01G1087100' => 'mdo', 'MD01G1104200' => 'mdo', 'MD02G1205100' => 'mdo', 'MD04G1079200' => 'mdo', 'MD04G1131400' => 'mdo', 'MD07G1121600' => 'mdo', 'MD07G1157300' => 'mdo', 'MD07G1171000' => 'mdo', 'MD12G1144500' => 'mdo', 'Medtr1g094610' => 'mtr', 'Medtr4g021795' => 'mtr', 'Medtr4g023760' => 'mtr', 'Medtr7g118050' => 'mtr', 'MELO3C005582.2' => 'cme', 'MELO3C005989.2' => 'cme', 'MELO3C006192.2' => 'cme', 'MELO3C009248.2' => 'cme', 'MELO3C019817.2' => 'cme', 'Migut.B01625' => 'egut', 'Migut.B01915' => 'egut', 'Migut.F01721' => 'egut', 'Migut.J00314' => 'egut', 'MSTRG.20742' => 'ama', 'MSTRG.8134' => 'ama', 'Nitab4.5_0000096g0010' => 'nta', 'Nitab4.5_0000202g0030' => 'nta', 'Nitab4.5_0000216g0370' => 'nta', 'Nitab4.5_0000457g0230' => 'nta', 'Nitab4.5_0001702g0170' => 'nta', 'Nitab4.5_0003607g0010' => 'nta', 'Nitab4.5_0004917g0020' => 'nta', 'Nitab4.5_0007059g0010' => 'nta', 'Nitab4.5_0007184g0010' => 'nta', 'Nitab4.5_0007346g0020' => 'nta', 'Nn1g00410' => 'nnu', 'Nn1g01252' => 'nnu', 'Nn2g11168' => 'nnu', 'Nn2g13403' => 'nnu', 'Nn2g13760' => 'nnu', 'Nn4g26380' => 'nnu', 'Oeu000806.2' => 'oeu', 'Oeu005788.1' => 'oeu', 'Oeu006900.3' => 'oeu', 'Oeu007797.1' => 'oeu', 'Oeu011932.1' => 'oeu', 'Oeu022739.1' => 'oeu', 'Oeu037918.1' => 'oeu', 'Oeu055490.2' => 'oeu', 'Os01g0844400' => 'osa', 'Os02g0819100' => 'osa', 'Os03g0804300' => 'osa', 'Os05g0458000' => 'osa', 'Os07g0467800' => 'osa', 'Os12g0602200' => 'osa', 'Peaxi162Scf00013g03444' => 'pax', 'Peaxi162Scf00094g01120' => 'pax', 'Peaxi162Scf00191g01211' => 'pax', 'Peaxi162Scf00238g01110' => 'pax', 'Peaxi162Scf00330g00719' => 'pax', 'Peaxi162Scf00627g00018' => 'pax', 'PGR031G2686' => 'pgr', 'PGR042G0809' => 'pgr', 'PGR142G0193' => 'pgr', 'PGSC0003DMG400011066' => 'stu', 'PGSC0003DMG400012041' => 'stu', 'PGSC0003DMG400013678' => 'stu', 'PGSC0003DMG400023477' => 'stu', 'PGSC0003DMG400025956' => 'stu', 'PGSC0003DMG401019151' => 'stu', 'Phvul.006G116400' => 'pvu', 'Phvul.007G097300' => 'pvu', 'Phvul.010G015000' => 'pvu', 'Phvul.010G083900' => 'pvu', 'Potri.001G117100' => 'ptr', 'Potri.002G147300' => 'ptr', 'Potri.003G115600' => 'ptr', 'Potri.006G087400' => 'ptr', 'Potri.010G226100' => 'ptr', 'Potri.014G069200' => 'ptr', 'Potri.014G104000' => 'ptr', 'Potri.016G100200' => 'ptr', 'Pp3c10_20450' => 'ppa', 'Pp3c1_42400' => 'ppa', 'Pp3c3_24390' => 'ppa', 'Pp3c3_2860' => 'ppa', 'PRCOL_00003193' => 'pco', 'Prupe.2G144500' => 'ppe', 'Prupe.2G195700' => 'ppe', 'Prupe.2G209800' => 'ppe', 'Prupe.5G080000' => 'ppe', 'Prupe.6G257900' => 'ppe', 'Psat3g001160' => 'psa', 'Psat6g181880' => 'psa', 'Psat7g233720' => 'psa', 'PSO063G7587' => 'pso', 'PSO339G2145' => 'pso', 'PSO339G3369' => 'pso', 'PSO478G2747' => 'pso', 'PSO513G0140' => 'pso', 'PSO782G1614' => 'pso', 'PSO782G4889' => 'pso', 'PSO782G5485' => 'pso', 'PSO801G0241' => 'pso', 'QL07p048854' => 'qlo', 'QL08p046745' => 'qlo', 'QL08p052606' => 'qlo', 'QL08p053414' => 'qlo', 'QL08p054868' => 'qlo', 'RcHm_v2.0_Chr1g0350251' => 'rch', 'RcHm_v2.0_Chr1g0360851' => 'rch', 'RcHm_v2.0_Chr1g0362791' => 'rch', 'RcHm_v2.0_Chr3g0466281' => 'rch', 'RcHm_v2.0_Chr7g0201481' => 'rch', 'Rhsim01G0148600' => 'rsi', 'Rhsim05G0194400' => 'rsi', 'Rhsim07G0000700' => 'rsi', 'Rhsim07G0000800' => 'rsi', 'Rhsim07G0027900' => 'rsi', 'Rhsim09G0149500' => 'rsi', 'RhsimUnG0186900' => 'rsi', 'Sabra01G0089900' => 'sbr', 'Sabra02G0114700' => 'sbr', 'Sabra02G0116300' => 'sbr', 'Sabra03G0080100' => 'sbr', 'Sabra08G0024300' => 'sbr', 'Sabra10G0174300' => 'sbr', 'Sabra14G0048900' => 'sbr', 'Sabra14G0076500' => 'sbr', 'SalBow5G2513' => 'sbo', 'Sc01g0002300' => 'sci', 'Sc01g0004450' => 'sci', 'Sc06g0001680' => 'sci', 'Sc23g0003580' => 'sci', 'Sed0000913' => 'sed', 'Sed0001655' => 'sed', 'Sed0007745' => 'sed', 'Sed0010951' => 'sed', 'Sed0017599' => 'sed', 'Sed0021405' => 'sed', 'Sed0022810' => 'sed', 'SEGI_07099' => 'sgi', 'SEGI_11931' => 'sgi', 'SEGI_13187' => 'sgi', 'SEGI_29958' => 'sgi', 'SEGI_36351' => 'sgi', 'SGA_v2.0_scaffold126G33770' => 'sas', 'SGA_v2.0_scaffold153G37003' => 'sas', 'SGA_v2.0_scaffold2G01359' => 'sas', 'SGA_v2.0_scaffold5G03064' => 'sas', 'SGA_v2.0_scaffold95G28903' => 'sas', 'SHI12701' => 'shi', 'SHI26410' => 'shi', 'SHI38997' => 'shi', 'SHI53759' => 'shi', 'SHI53886' => 'shi', 'SHI54714' => 'shi', 'SMO011G0041' => 'smo', 'SMO146G0251' => 'smo', 'SMO160G0004' => 'smo', 'SMO174G0057' => 'smo', 'SMO244G0089' => 'smo', 'SMO296G0011' => 'smo', 'Solyc01g091280.3' => 'sly', 'Solyc05g047610.3' => 'sly', 'Solyc05g047640.3' => 'sly', 'Solyc05g055630.3' => 'sly', 'Solyc10g018160.2' => 'sly', 'Solyc10g084820.2' => 'sly', 'Solyc10g086565.2' => 'sly', 'Sopen01g037030' => 'spe', 'Sopen05g027920' => 'spe', 'Sopen05g034070' => 'spe', 'Sopen10g007260' => 'spe', 'Sopen10g034260' => 'spe', 'Sopen10g035950' => 'spe', 'Sp3g07710' => 'spa', 'Sp4g27420' => 'spa', 'Sp5g02450' => 'spa', 'Sp6g01280' => 'spa', 'Sp6g38480' => 'spa', 'Sp7g20780' => 'spa', 'TAR374G1413' => 'tar', 'TAR623G1777' => 'tar', 'TAR629G2370' => 'tar', 'TAR633G1759' => 'tar', 'TAR636G3387' => 'tar', 'THA.LOC104802447' => 'tha', 'THA.LOC104813916' => 'tha', 'THA.LOC104816423' => 'tha', 'THA.LOC104817246' => 'tha', 'THA.LOC104825895' => 'tha', 'Thecc.01G335200' => 'tca', 'Thecc.01G377400' => 'tca', 'Thecc.03G262200' => 'tca', 'Thecc.05G036800' => 'tca', 'Thecc.10G080500' => 'tca', 'Thecc.10G080800' => 'tca', 'Thhalv10001560m.g' => 'esa', 'Thhalv10006120m.g' => 'esa', 'Thhalv10014375m.g' => 'esa', 'Thhalv10021264m.g' => 'esa', 'Thhalv10028856m.g' => 'esa', 'TPR.G1914' => 'tpr', 'TPR.G4757' => 'tpr', 'TPR.G5595' => 'tpr', 'TWI14G0952' => 'twi', 'TWI14G1307' => 'twi', 'TWI38G2143' => 'twi', 'TWI59G0826' => 'twi', 'TWI77G0527' => 'twi', 'TWI81G0150' => 'twi', 'unitig_21.g21018' => 'ugi', 'unitig_26.g9725' => 'ugi', 'unitig_744.g24653' => 'ugi', 'unitig_749.g13778' => 'ugi', 'unitig_899.g15035' => 'ugi', 'vmacro04296' => 'vma', 'vmacro04852' => 'vma', 'vmacro13404' => 'vma', 'vmacro20169' => 'vma', 'vmacro21014' => 'vma', 'VMungo0331G0237' => 'vmu', 'VMungo0331G0706' => 'vmu', 'VMungo0331G1361' => 'vmu', 'VMungo0331G1489' => 'vmu', 'VMungo0540G1037' => 'vmu', 'VMungo0720G2487' => 'vmu', 'VMungo0720G2721' => 'vmu', 'Zm00001eb086860' => 'zma', 'Zm00001eb104760' => 'zma', 'Zm00001eb148220' => 'zma', 'Zm00001eb259030' => 'zma', 'Zm00001eb289590' => 'zma', 'Zm00001eb420150' => 'zma' ), 'gf_id' => 'HOM05D000968', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000968' ), 'data_identifier' => 'HOM05D000968', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000968', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p31690' => 'bna', 'A03p36040' => 'bna', 'A03p53730' => 'bna', 'A04p01410' => 'bna', 'A05p05420' => 'bna', 'A05p39630' => 'bna', 'A05p39640' => 'bna', 'A09p00970' => 'bna', 'A09p53060' => 'bna', 'A10p31890' => 'bna', 'Aa31LG10G15040' => 'aar', 'Aa31LG1G21090' => 'aar', 'Aa31LG1G26900' => 'aar', 'Aa31LG3G1820' => 'aar', 'Aa31LG5G1100' => 'aar', 'Aa31LG6G4740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2265' => 'aag', 'Actinidia07998' => 'ach', 'Actinidia11266' => 'ach', 'Actinidia12682' => 'ach', 'Actinidia26479' => 'ach', 'Actinidia31406' => 'ach', 'Actinidia32437' => 'ach', 'Actinidia38862' => 'ach', 'Ah.05g174230' => 'amhyb', 'Ah.05g179070' => 'amhyb', 'Ah.05g179090' => 'amhyb', 'Ah.12g059950' => 'amhyb', 'AL3G20480' => 'aly', 'AL4G44520' => 'aly', 'AL5G43110' => 'aly', 'AL6G13890' => 'aly', 'AL6G52620' => 'aly', 'AL7G30830' => 'aly', 'Aqoxy1G00899' => 'aox', 'Aqoxy5G04333' => 'aox', 'Aqoxy7G00641' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3IZ0NN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4EF6AW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W9P8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79GA3M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C43NQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFCU6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G95YVJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCHK29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LU1UG8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX91RN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGB4B1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8DA0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9H7JI' => 'arhy', 'AT3G09320' => 'ath', 'AT3G60800' => 'ath', 'AT4G00840' => 'ath', 'AT4G22750' => 'ath', 'AT5G04270' => 'ath', 'ATR0090G003' => 'atr', 'ATR0559G349' => 'atr', 'ATR0680G261' => 'atr', 'ATR0810G048' => 'atr', 'Atru.chr12.831' => 'acertr', 'Atru.chr5.303' => 'acertr', 'Atru.chr5.748' => 'acertr', 'Atru.chr8.1999' => 'acertr', 'Atru.chr9.1436' => 'acertr', 'AUR62004211' => 'cqu', 'AUR62004548' => 'cqu', 'AUR62013637' => 'cqu', 'AUR62022662' => 'cqu', 'AUR62025777' => 'cqu', 'AUR62042386' => 'cqu', 'BcaB01g02310' => 'bca', 'BcaB01g06062' => 'bca', 'BcaB02g08975' => 'bca', 'BcaB02g08980' => 'bca', 'BcaC01g04228' => 'bca', 'BcaC01g06830' => 'bca', 'BcaC02g10186' => 'bca', 'BcaC02g12214' => 'bca', 'BcaC04g24101' => 'bca', 'BcaC05g29520' => 'bca', 'BcaC05g29661' => 'bca', 'BcaC06g32130' => 'bca', 'BcaC06g32131' => 'bca', 'BcaC07g40601' => 'bca', 'BcaC07g42641' => 'bca', 'BcaNung01038' => 'bca', 'BcaNung01676' => 'bca', 'BcaNung02480' => 'bca', 'BcaNung07376' => 'bca', 'BolC3t16146H' => 'bol', 'BolC3t16637H' => 'bol', 'BolC4t22257H' => 'bol', 'BolC4t24728H' => 'bol', 'BolC5t34517H' => 'bol', 'BolC7t45703H' => 'bol', 'BolC8t51166H' => 'bol', 'BolC9t53038H' => 'bol', 'BolC9t60000H' => 'bol', 'BraA01t01345Z' => 'bra', 'BraA01t01346Z' => 'bra', 'BraA01t01348Z' => 'bra', 'BraA03t12347Z' => 'bra', 'BraA03t12775Z' => 'bra', 'BraA03t14439Z' => 'bra', 'BraA04t15860Z' => 'bra', 'BraA05t19511Z' => 'bra', 'BraA05t22746Z' => 'bra', 'BraA09t35767Z' => 'bra', 'BraA09t40732Z' => 'bra', 'BraA10t45233Z' => 'bra', 'C03p38720' => 'bna', 'C03p43680' => 'bna', 'C04p06350' => 'bna', 'C04p31800' => 'bna', 'C05p58680' => 'bna', 'C07p52110' => 'bna', 'C08p35760' => 'bna', 'C09p01050' => 'bna', 'C09p72600' => 'bna', 'CAN.G106.2' => 'can', 'CAN.G1482.1' => 'can', 'CAN.G324.12' => 'can', 'CAN.G388.20' => 'can', 'CAN.G412.7' => 'can', 'CAN.G694.32' => 'can', 'CAN.G92.12' => 'can', 'CANSAT11G2353' => 'cansat', 'CANSAT21G1398' => 'cansat', 'CANSAT56G2456' => 'cansat', 'CANSAT56G3031' => 'cansat', 'CANSAT56G4539' => 'cansat', 'CARHR083680' => 'chi', 'CARHR171190' => 'chi', 'CARHR209010' => 'chi', 'CARHR229680' => 'chi', 'CARHR249490' => 'chi', 'Carub.0003s0844' => 'cru', 'Carub.0005s2755' => 'cru', 'Carub.0006s0322' => 'cru', 'Carub.0006s3586' => 'cru', 'Carub.0007s1855' => 'cru', 'Ca_07808_v3' => 'car', 'Ca_09535_v3' => 'car', 'Ca_10548_v3' => 'car', 'Ca_19913_v3' => 'car', 'Ca_19916_v3' => 'car', 'Ca_19975_v3' => 'car', 'CBR_g22876' => 'cbr', 'CBR_g22879' => 'cbr', 'CBR_g38491' => 'cbr', 'CBR_g54185' => 'cbr', 'CBR_g54190' => 'cbr', 'Cc02_g11020' => 'ccan', 'Cc02_g23920' => 'ccan', 'Cc02_g39860' => 'ccan', 'Cc02_g39870' => 'ccan', 'Cc03_g06760' => 'ccan', 'Cc06_g02450' => 'ccan', 'Cc09_g09450' => 'ccan', 'CDE02G1959' => 'cde', 'CDE04G0600' => 'cde', 'CDE07G1996' => 'cde', 'CDE07G2078' => 'cde', 'CDE11G0611' => 'cde', 'Cfa001683' => 'cfa', 'Cfa001734' => 'cfa', 'Cfa001737' => 'cfa', 'Cfa003751' => 'cfa', 'Cfa012019' => 'cfa', 'Cfa017353' => 'cfa', 'Cfa017732' => 'cfa', 'Cfa022464' => 'cfa', 'Ciclev10012400m.g' => 'ccl', 'Ciclev10021242m.g' => 'ccl', 'Ciclev10021302m.g' => 'ccl', 'Ciclev10021463m.g' => 'ccl', 'Ciclev10032359m.g' => 'ccl', 'CiPaw.01G081000' => 'cil', 'CiPaw.01G262500' => 'cil', 'CiPaw.01G269800' => 'cil', 'CiPaw.02G168400' => 'cil', 'CiPaw.05G119500' => 'cil', 'CiPaw.11G147300' => 'cil', 'ClCG01G003630' => 'cla', 'ClCG05G000510' => 'cla', 'ClCG05G002300' => 'cla', 'ClCG08G007650' => 'cla', 'ClCG10G021250' => 'cla', 'COL.COLO4_06218' => 'col', 'COL.COLO4_12538' => 'col', 'COL.COLO4_14775' => 'col', 'COL.COLO4_23875' => 'col', 'Cpa.g.sc141.16' => 'cpa', 'Cpa.g.sc169.16' => 'cpa', 'Cpa.g.sc244.4' => 'cpa', 'Cpa.g.sc244.5' => 'cpa', 'Cpa.g.sc29.87' => 'cpa', 'Cpa.g.sc53.115' => 'cpa', 'Cre03.g207502' => 'cre', 'Cre06.g277000' => 'cre', 'Cre09.g394050' => 'cre', 'CsaV3_3G007680' => 'csa', 'CsaV3_3G009710' => 'csa', 'CsaV3_3G034790' => 'csa', 'CsaV3_5G003750' => 'csa', 'CsaV3_6G036620' => 'csa', 'CSS0002288' => 'camsi', 'CSS0011250' => 'camsi', 'CSS0021619' => 'camsi', 'CSS0046701' => 'camsi', 'DCAR_006420' => 'dca', 'DCAR_006865' => 'dca', 'DCAR_008558' => 'dca', 'DCAR_028754' => 'dca', 'DCAR_028755' => 'dca', 'Dinv31218' => 'din', 'Dinv32371' => 'din', 'Dinv34250' => 'din', 'Dinv37156' => 'din', 'Dinv43704' => 'din', 'Duzib093G1811' => 'dzi', 'Duzib106G1622' => 'dzi', 'Duzib114G0504' => 'dzi', 'Duzib128G0338' => 'dzi', 'Duzib128G1577' => 'dzi', 'Duzib133G0104' => 'dzi', 'Duzib133G1080' => 'dzi', 'Duzib138G0324' => 'dzi', 'Duzib138G0394' => 'dzi', 'Duzib205G0122' => 'dzi', 'Duzib268G1020' => 'dzi', 'Duzib268G1359' => 'dzi', 'ECA232G3929' => 'eca', 'ECA236G2210' => 'eca', 'ECA236G2287' => 'eca', 'ECA240G4568' => 'eca', 'ECA247G0894' => 'eca', 'EL10Ac1g00200' => 'bvu', 'EL10Ac1g00886' => 'bvu', 'EL10As1g23091' => 'bvu', 'EL10As1g23092' => 'bvu', 'Eucgr.A01284' => 'egr', 'Eucgr.A01285' => 'egr', 'Eucgr.D02456' => 'egr', 'Eucgr.E00018' => 'egr', 'Eucgr.E01439' => 'egr', 'Eucgr.G02859' => 'egr', 'FAN01G0168' => 'fan', 'FAN01G0453' => 'fan', 'FAN01G2761' => 'fan', 'FAN02G1239' => 'fan', 'FAN03G0645' => 'fan', 'FAN03G2707' => 'fan', 'FAN03G2978' => 'fan', 'FAN04G0227' => 'fan', 'FAN06G0091' => 'fan', 'FAN06G1418' => 'fan', 'FAN06G1512' => 'fan', 'FAN06G1986' => 'fan', 'FAN06G2905' => 'fan', 'FAN06G4325' => 'fan', 'FAN08G0033' => 'fan', 'FAN09G0642' => 'fan', 'FAN10G1763' => 'fan', 'FAN10G2026' => 'fan', 'FAN10G2513' => 'fan', 'FAN10G3402' => 'fan', 'FAN10G3564' => 'fan', 'FAN10G3987' => 'fan', 'FAN13G1490' => 'fan', 'FAN14G5857' => 'fan', 'FAN18G1188' => 'fan', 'FvH4_5g00750' => 'fve', 'FvH4_6g13410' => 'fve', 'FvH4_7g11740' => 'fve', 'FvH4_7g17410' => 'fve', 'FvH4_7g18860' => 'fve', 'Glyma.01G099100' => 'gma', 'Glyma.01G142300' => 'gma', 'Glyma.03G025500' => 'gma', 'Glyma.03G069700' => 'gma', 'Glyma.03G260000' => 'gma', 'Glyma.09G269800' => 'gma', 'Glyma.10G208700' => 'gma', 'Glyma.18G220400' => 'gma', 'Glyma.20G182000' => 'gma', 'Gohir.A01G221726' => 'ghi', 'Gohir.A07G134600' => 'ghi', 'Gohir.A07G146000' => 'ghi', 'Gohir.A08G173900' => 'ghi', 'Gohir.A09G194900' => 'ghi', 'Gohir.A10G204100' => 'ghi', 'Gohir.A11G080600' => 'ghi', 'Gohir.A11G327500' => 'ghi', 'Gohir.A12G101800' => 'ghi', 'Gohir.D01G211200' => 'ghi', 'Gohir.D07G139200' => 'ghi', 'Gohir.D07G152100' => 'ghi', 'Gohir.D08G192600' => 'ghi', 'Gohir.D09G189200' => 'ghi', 'Gohir.D10G212000' => 'ghi', 'Gohir.D11G085200' => 'ghi', 'Gohir.D11G346400' => 'ghi', 'Gohir.D12G104800' => 'ghi', 'Gorai.001G151300' => 'gra', 'Gorai.001G174100' => 'gra', 'Gorai.002G257000' => 'gra', 'Gorai.004G202600' => 'gra', 'Gorai.007G090900' => 'gra', 'Gorai.007G376700' => 'gra', 'Gorai.008G114100' => 'gra', 'Gorai.011G237900' => 'gra', 'GSVIVG01005450001' => 'vvi', 'GSVIVG01016232001' => 'vvi', 'GSVIVG01026157001' => 'vvi', 'GSVIVG01027419001' => 'vvi', 'GSVIVG01027631001' => 'vvi', 'GSVIVG01034143001' => 'vvi', 'HanXRQChr03g0093921' => 'han', 'HanXRQChr04g0120001' => 'han', 'HanXRQChr04g0122561' => 'han', 'HanXRQChr09g0246851' => 'han', 'HanXRQChr10g0293311' => 'han', 'HanXRQChr13g0425231' => 'han', 'HanXRQChr16g0532571' => 'han', 'Haze_09050' => 'cav', 'Haze_15715' => 'cav', 'Haze_15716' => 'cav', 'Haze_16803' => 'cav', 'Haze_16850' => 'cav', 'Hma1.2p1_0301F.1_g118655' => 'hma', 'Hma1.2p1_0309F.1_g120590' => 'hma', 'Hma1.2p1_0936F.1_g238900' => 'hma', 'Hma1.2p1_3552F.1_g336740' => 'hma', 'HPP92_003520' => 'vpl', 'HPP92_006628' => 'vpl', 'HPP92_006645' => 'vpl', 'HPP92_014669' => 'vpl', 'HPP92_015077' => 'vpl', 'Hund16742' => 'sun', 'Hund17022' => 'sun', 'Lalb_Chr02g0152131' => 'lal', 'Lalb_Chr05g0225371' => 'lal', 'Lalb_Chr07g0189841' => 'lal', 'Lalb_Chr07g0192961' => 'lal', 'Lalb_Chr12g0208221' => 'lal', 'Lalb_Chr13g0291211' => 'lal', 'Lalb_Chr13g0291781' => 'lal', 'Lalb_Chr18g0044651' => 'lal', 'Lalb_Chr21g0313731' => 'lal', 'Lj1g0022533' => 'lja', 'Lj2A18T50' => 'lonja', 'Lj2A92G93' => 'lonja', 'Lj3A965T73' => 'lonja', 'Lj3g0000673' => 'lja', 'Lj3g0002666' => 'lja', 'Lj4g0016985' => 'lja', 'Lj5g0003625' => 'lja', 'Lj7A529G36' => 'lonja', 'Lj9A569T49' => 'lonja', 'Lj9A604T63' => 'lonja', 'Lsat_1_v5_gn_3_132060' => 'lsa', 'Lsat_1_v5_gn_4_68941' => 'lsa', 'Lsat_1_v5_gn_5_95580' => 'lsa', 'Lsat_1_v5_gn_7_161' => 'lsa', 'Lsat_1_v5_gn_7_7041' => 'lsa', 'Lsat_1_v5_gn_9_33481' => 'lsa', 'Lsat_1_v5_gn_9_68260' => 'lsa', 'Manes.01G073100' => 'mes', 'Manes.01G266300' => 'mes', 'Manes.02G033300' => 'mes', 'Manes.05G017900' => 'mes', 'Manes.05G046100' => 'mes', 'Manes.08G080900' => 'mes', 'Manes.10G049400' => 'mes', 'Mapoly0009s0186' => 'mpo', 'Mapoly0036s0118' => 'mpo', 'Mapoly0101s0046' => 'mpo', 'MBI04_g30218_MAGBIO' => 'mbi', 'MBI04_g35564_MAGBIO' => 'mbi', 'MBI12_g34011_MAGBIO' => 'mbi', 'MBI14_g04655_MAGBIO' => 'mbi', 'MCO07G653' => 'mco', 'MCO10G173' => 'mco', 'MD01G1087100' => 'mdo', 'MD01G1104200' => 'mdo', 'MD02G1205100' => 'mdo', 'MD04G1079200' => 'mdo', 'MD04G1131400' => 'mdo', 'MD07G1121600' => 'mdo', 'MD07G1157300' => 'mdo', 'MD07G1171000' => 'mdo', 'MD12G1144500' => 'mdo', 'Medtr1g094610' => 'mtr', 'Medtr4g021795' => 'mtr', 'Medtr4g023760' => 'mtr', 'Medtr7g118050' => 'mtr', 'MELO3C005582.2' => 'cme', 'MELO3C005989.2' => 'cme', 'MELO3C006192.2' => 'cme', 'MELO3C009248.2' => 'cme', 'MELO3C019817.2' => 'cme', 'Migut.B01625' => 'egut', 'Migut.B01915' => 'egut', 'Migut.F01721' => 'egut', 'Migut.J00314' => 'egut', 'MSTRG.20742' => 'ama', 'MSTRG.8134' => 'ama', 'Nitab4.5_0000096g0010' => 'nta', 'Nitab4.5_0000202g0030' => 'nta', 'Nitab4.5_0000216g0370' => 'nta', 'Nitab4.5_0000457g0230' => 'nta', 'Nitab4.5_0001702g0170' => 'nta', 'Nitab4.5_0003607g0010' => 'nta', 'Nitab4.5_0004917g0020' => 'nta', 'Nitab4.5_0007059g0010' => 'nta', 'Nitab4.5_0007184g0010' => 'nta', 'Nitab4.5_0007346g0020' => 'nta', 'Nn1g00410' => 'nnu', 'Nn1g01252' => 'nnu', 'Nn2g11168' => 'nnu', 'Nn2g13403' => 'nnu', 'Nn2g13760' => 'nnu', 'Nn4g26380' => 'nnu', 'Oeu000806.2' => 'oeu', 'Oeu005788.1' => 'oeu', 'Oeu006900.3' => 'oeu', 'Oeu007797.1' => 'oeu', 'Oeu011932.1' => 'oeu', 'Oeu022739.1' => 'oeu', 'Oeu037918.1' => 'oeu', 'Oeu055490.2' => 'oeu', 'Os01g0844400' => 'osa', 'Os02g0819100' => 'osa', 'Os03g0804300' => 'osa', 'Os05g0458000' => 'osa', 'Os07g0467800' => 'osa', 'Os12g0602200' => 'osa', 'Peaxi162Scf00013g03444' => 'pax', 'Peaxi162Scf00094g01120' => 'pax', 'Peaxi162Scf00191g01211' => 'pax', 'Peaxi162Scf00238g01110' => 'pax', 'Peaxi162Scf00330g00719' => 'pax', 'Peaxi162Scf00627g00018' => 'pax', 'PGR031G2686' => 'pgr', 'PGR042G0809' => 'pgr', 'PGR142G0193' => 'pgr', 'PGSC0003DMG400011066' => 'stu', 'PGSC0003DMG400012041' => 'stu', 'PGSC0003DMG400013678' => 'stu', 'PGSC0003DMG400023477' => 'stu', 'PGSC0003DMG400025956' => 'stu', 'PGSC0003DMG401019151' => 'stu', 'Phvul.006G116400' => 'pvu', 'Phvul.007G097300' => 'pvu', 'Phvul.010G015000' => 'pvu', 'Phvul.010G083900' => 'pvu', 'Potri.001G117100' => 'ptr', 'Potri.002G147300' => 'ptr', 'Potri.003G115600' => 'ptr', 'Potri.006G087400' => 'ptr', 'Potri.010G226100' => 'ptr', 'Potri.014G069200' => 'ptr', 'Potri.014G104000' => 'ptr', 'Potri.016G100200' => 'ptr', 'Pp3c10_20450' => 'ppa', 'Pp3c1_42400' => 'ppa', 'Pp3c3_24390' => 'ppa', 'Pp3c3_2860' => 'ppa', 'PRCOL_00003193' => 'pco', 'Prupe.2G144500' => 'ppe', 'Prupe.2G195700' => 'ppe', 'Prupe.2G209800' => 'ppe', 'Prupe.5G080000' => 'ppe', 'Prupe.6G257900' => 'ppe', 'Psat3g001160' => 'psa', 'Psat6g181880' => 'psa', 'Psat7g233720' => 'psa', 'PSO063G7587' => 'pso', 'PSO339G2145' => 'pso', 'PSO339G3369' => 'pso', 'PSO478G2747' => 'pso', 'PSO513G0140' => 'pso', 'PSO782G1614' => 'pso', 'PSO782G4889' => 'pso', 'PSO782G5485' => 'pso', 'PSO801G0241' => 'pso', 'QL07p048854' => 'qlo', 'QL08p046745' => 'qlo', 'QL08p052606' => 'qlo', 'QL08p053414' => 'qlo', 'QL08p054868' => 'qlo', 'RcHm_v2.0_Chr1g0350251' => 'rch', 'RcHm_v2.0_Chr1g0360851' => 'rch', 'RcHm_v2.0_Chr1g0362791' => 'rch', 'RcHm_v2.0_Chr3g0466281' => 'rch', 'RcHm_v2.0_Chr7g0201481' => 'rch', 'Rhsim01G0148600' => 'rsi', 'Rhsim05G0194400' => 'rsi', 'Rhsim07G0000700' => 'rsi', 'Rhsim07G0000800' => 'rsi', 'Rhsim07G0027900' => 'rsi', 'Rhsim09G0149500' => 'rsi', 'RhsimUnG0186900' => 'rsi', 'Sabra01G0089900' => 'sbr', 'Sabra02G0114700' => 'sbr', 'Sabra02G0116300' => 'sbr', 'Sabra03G0080100' => 'sbr', 'Sabra08G0024300' => 'sbr', 'Sabra10G0174300' => 'sbr', 'Sabra14G0048900' => 'sbr', 'Sabra14G0076500' => 'sbr', 'SalBow5G2513' => 'sbo', 'Sc01g0002300' => 'sci', 'Sc01g0004450' => 'sci', 'Sc06g0001680' => 'sci', 'Sc23g0003580' => 'sci', 'Sed0000913' => 'sed', 'Sed0001655' => 'sed', 'Sed0007745' => 'sed', 'Sed0010951' => 'sed', 'Sed0017599' => 'sed', 'Sed0021405' => 'sed', 'Sed0022810' => 'sed', 'SEGI_07099' => 'sgi', 'SEGI_11931' => 'sgi', 'SEGI_13187' => 'sgi', 'SEGI_29958' => 'sgi', 'SEGI_36351' => 'sgi', 'SGA_v2.0_scaffold126G33770' => 'sas', 'SGA_v2.0_scaffold153G37003' => 'sas', 'SGA_v2.0_scaffold2G01359' => 'sas', 'SGA_v2.0_scaffold5G03064' => 'sas', 'SGA_v2.0_scaffold95G28903' => 'sas', 'SHI12701' => 'shi', 'SHI26410' => 'shi', 'SHI38997' => 'shi', 'SHI53759' => 'shi', 'SHI53886' => 'shi', 'SHI54714' => 'shi', 'SMO011G0041' => 'smo', 'SMO146G0251' => 'smo', 'SMO160G0004' => 'smo', 'SMO174G0057' => 'smo', 'SMO244G0089' => 'smo', 'SMO296G0011' => 'smo', 'Solyc01g091280.3' => 'sly', 'Solyc05g047610.3' => 'sly', 'Solyc05g047640.3' => 'sly', 'Solyc05g055630.3' => 'sly', 'Solyc10g018160.2' => 'sly', 'Solyc10g084820.2' => 'sly', 'Solyc10g086565.2' => 'sly', 'Sopen01g037030' => 'spe', 'Sopen05g027920' => 'spe', 'Sopen05g034070' => 'spe', 'Sopen10g007260' => 'spe', 'Sopen10g034260' => 'spe', 'Sopen10g035950' => 'spe', 'Sp3g07710' => 'spa', 'Sp4g27420' => 'spa', 'Sp5g02450' => 'spa', 'Sp6g01280' => 'spa', 'Sp6g38480' => 'spa', 'Sp7g20780' => 'spa', 'TAR374G1413' => 'tar', 'TAR623G1777' => 'tar', 'TAR629G2370' => 'tar', 'TAR633G1759' => 'tar', 'TAR636G3387' => 'tar', 'THA.LOC104802447' => 'tha', 'THA.LOC104813916' => 'tha', 'THA.LOC104816423' => 'tha', 'THA.LOC104817246' => 'tha', 'THA.LOC104825895' => 'tha', 'Thecc.01G335200' => 'tca', 'Thecc.01G377400' => 'tca', 'Thecc.03G262200' => 'tca', 'Thecc.05G036800' => 'tca', 'Thecc.10G080500' => 'tca', 'Thecc.10G080800' => 'tca', 'Thhalv10001560m.g' => 'esa', 'Thhalv10006120m.g' => 'esa', 'Thhalv10014375m.g' => 'esa', 'Thhalv10021264m.g' => 'esa', 'Thhalv10028856m.g' => 'esa', 'TPR.G1914' => 'tpr', 'TPR.G4757' => 'tpr', 'TPR.G5595' => 'tpr', 'TWI14G0952' => 'twi', 'TWI14G1307' => 'twi', 'TWI38G2143' => 'twi', 'TWI59G0826' => 'twi', 'TWI77G0527' => 'twi', 'TWI81G0150' => 'twi', 'unitig_21.g21018' => 'ugi', 'unitig_26.g9725' => 'ugi', 'unitig_744.g24653' => 'ugi', 'unitig_749.g13778' => 'ugi', 'unitig_899.g15035' => 'ugi', 'vmacro04296' => 'vma', 'vmacro04852' => 'vma', 'vmacro13404' => 'vma', 'vmacro20169' => 'vma', 'vmacro21014' => 'vma', 'VMungo0331G0237' => 'vmu', 'VMungo0331G0706' => 'vmu', 'VMungo0331G1361' => 'vmu', 'VMungo0331G1489' => 'vmu', 'VMungo0540G1037' => 'vmu', 'VMungo0720G2487' => 'vmu', 'VMungo0720G2721' => 'vmu', 'Zm00001eb086860' => 'zma', 'Zm00001eb104760' => 'zma', 'Zm00001eb148220' => 'zma', 'Zm00001eb259030' => 'zma', 'Zm00001eb289590' => 'zma', 'Zm00001eb420150' => 'zma' ) $gf_id = 'HOM05D000968' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000968' ) $data_identifier = 'HOM05D000968' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 19, 'bol' => (int) 9, 'bra' => (int) 12, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 5, 'ccan' => (int) 7, 'cde' => (int) 5, 'cfa' => (int) 8, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 4, 'dca' => (int) 5, 'din' => (int) 5, 'dzi' => (int) 12, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 25, 'fve' => (int) 5, 'gma' => (int) 9, 'ghi' => (int) 18, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 7, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 5, 'sun' => (int) 2, 'lal' => (int) 9, 'lja' => (int) 5, 'lonja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 9, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 2, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 3, 'stu' => (int) 6, 'pvu' => (int) 4, 'ptr' => (int) 8, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 3, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 1, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 5, 'sas' => (int) 5, 'shi' => (int) 6, 'smo' => (int) 6, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 3, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420150' $species_info = array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ) $local_species = 'pvu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000968', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p31690' => 'bna', 'A03p36040' => 'bna', 'A03p53730' => 'bna', 'A04p01410' => 'bna', 'A05p05420' => 'bna', 'A05p39630' => 'bna', 'A05p39640' => 'bna', 'A09p00970' => 'bna', 'A09p53060' => 'bna', 'A10p31890' => 'bna', 'Aa31LG10G15040' => 'aar', 'Aa31LG1G21090' => 'aar', 'Aa31LG1G26900' => 'aar', 'Aa31LG3G1820' => 'aar', 'Aa31LG5G1100' => 'aar', 'Aa31LG6G4740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2265' => 'aag', 'Actinidia07998' => 'ach', 'Actinidia11266' => 'ach', 'Actinidia12682' => 'ach', 'Actinidia26479' => 'ach', 'Actinidia31406' => 'ach', 'Actinidia32437' => 'ach', 'Actinidia38862' => 'ach', 'Ah.05g174230' => 'amhyb', 'Ah.05g179070' => 'amhyb', 'Ah.05g179090' => 'amhyb', 'Ah.12g059950' => 'amhyb', 'AL3G20480' => 'aly', 'AL4G44520' => 'aly', 'AL5G43110' => 'aly', 'AL6G13890' => 'aly', 'AL6G52620' => 'aly', 'AL7G30830' => 'aly', 'Aqoxy1G00899' => 'aox', 'Aqoxy5G04333' => 'aox', 'Aqoxy7G00641' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3IZ0NN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4EF6AW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W9P8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79GA3M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C43NQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFCU6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G95YVJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCHK29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LU1UG8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX91RN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGB4B1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8DA0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9H7JI' => 'arhy', 'AT3G09320' => 'ath', 'AT3G60800' => 'ath', 'AT4G00840' => 'ath', 'AT4G22750' => 'ath', 'AT5G04270' => 'ath', 'ATR0090G003' => 'atr', 'ATR0559G349' => 'atr', 'ATR0680G261' => 'atr', 'ATR0810G048' => 'atr', 'Atru.chr12.831' => 'acertr', 'Atru.chr5.303' => 'acertr', 'Atru.chr5.748' => 'acertr', 'Atru.chr8.1999' => 'acertr', 'Atru.chr9.1436' => 'acertr', 'AUR62004211' => 'cqu', 'AUR62004548' => 'cqu', 'AUR62013637' => 'cqu', 'AUR62022662' => 'cqu', 'AUR62025777' => 'cqu', 'AUR62042386' => 'cqu', 'BcaB01g02310' => 'bca', 'BcaB01g06062' => 'bca', 'BcaB02g08975' => 'bca', 'BcaB02g08980' => 'bca', 'BcaC01g04228' => 'bca', 'BcaC01g06830' => 'bca', 'BcaC02g10186' => 'bca', 'BcaC02g12214' => 'bca', 'BcaC04g24101' => 'bca', 'BcaC05g29520' => 'bca', 'BcaC05g29661' => 'bca', 'BcaC06g32130' => 'bca', 'BcaC06g32131' => 'bca', 'BcaC07g40601' => 'bca', 'BcaC07g42641' => 'bca', 'BcaNung01038' => 'bca', 'BcaNung01676' => 'bca', 'BcaNung02480' => 'bca', 'BcaNung07376' => 'bca', 'BolC3t16146H' => 'bol', 'BolC3t16637H' => 'bol', 'BolC4t22257H' => 'bol', 'BolC4t24728H' => 'bol', 'BolC5t34517H' => 'bol', 'BolC7t45703H' => 'bol', 'BolC8t51166H' => 'bol', 'BolC9t53038H' => 'bol', 'BolC9t60000H' => 'bol', 'BraA01t01345Z' => 'bra', 'BraA01t01346Z' => 'bra', 'BraA01t01348Z' => 'bra', 'BraA03t12347Z' => 'bra', 'BraA03t12775Z' => 'bra', 'BraA03t14439Z' => 'bra', 'BraA04t15860Z' => 'bra', 'BraA05t19511Z' => 'bra', 'BraA05t22746Z' => 'bra', 'BraA09t35767Z' => 'bra', 'BraA09t40732Z' => 'bra', 'BraA10t45233Z' => 'bra', 'C03p38720' => 'bna', 'C03p43680' => 'bna', 'C04p06350' => 'bna', 'C04p31800' => 'bna', 'C05p58680' => 'bna', 'C07p52110' => 'bna', 'C08p35760' => 'bna', 'C09p01050' => 'bna', 'C09p72600' => 'bna', 'CAN.G106.2' => 'can', 'CAN.G1482.1' => 'can', 'CAN.G324.12' => 'can', 'CAN.G388.20' => 'can', 'CAN.G412.7' => 'can', 'CAN.G694.32' => 'can', 'CAN.G92.12' => 'can', 'CANSAT11G2353' => 'cansat', 'CANSAT21G1398' => 'cansat', 'CANSAT56G2456' => 'cansat', 'CANSAT56G3031' => 'cansat', 'CANSAT56G4539' => 'cansat', 'CARHR083680' => 'chi', 'CARHR171190' => 'chi', 'CARHR209010' => 'chi', 'CARHR229680' => 'chi', 'CARHR249490' => 'chi', 'Carub.0003s0844' => 'cru', 'Carub.0005s2755' => 'cru', 'Carub.0006s0322' => 'cru', 'Carub.0006s3586' => 'cru', 'Carub.0007s1855' => 'cru', 'Ca_07808_v3' => 'car', 'Ca_09535_v3' => 'car', 'Ca_10548_v3' => 'car', 'Ca_19913_v3' => 'car', 'Ca_19916_v3' => 'car', 'Ca_19975_v3' => 'car', 'CBR_g22876' => 'cbr', 'CBR_g22879' => 'cbr', 'CBR_g38491' => 'cbr', 'CBR_g54185' => 'cbr', 'CBR_g54190' => 'cbr', 'Cc02_g11020' => 'ccan', 'Cc02_g23920' => 'ccan', 'Cc02_g39860' => 'ccan', 'Cc02_g39870' => 'ccan', 'Cc03_g06760' => 'ccan', 'Cc06_g02450' => 'ccan', 'Cc09_g09450' => 'ccan', 'CDE02G1959' => 'cde', 'CDE04G0600' => 'cde', 'CDE07G1996' => 'cde', 'CDE07G2078' => 'cde', 'CDE11G0611' => 'cde', 'Cfa001683' => 'cfa', 'Cfa001734' => 'cfa', 'Cfa001737' => 'cfa', 'Cfa003751' => 'cfa', 'Cfa012019' => 'cfa', 'Cfa017353' => 'cfa', 'Cfa017732' => 'cfa', 'Cfa022464' => 'cfa', 'Ciclev10012400m.g' => 'ccl', 'Ciclev10021242m.g' => 'ccl', 'Ciclev10021302m.g' => 'ccl', 'Ciclev10021463m.g' => 'ccl', 'Ciclev10032359m.g' => 'ccl', 'CiPaw.01G081000' => 'cil', 'CiPaw.01G262500' => 'cil', 'CiPaw.01G269800' => 'cil', 'CiPaw.02G168400' => 'cil', 'CiPaw.05G119500' => 'cil', 'CiPaw.11G147300' => 'cil', 'ClCG01G003630' => 'cla', 'ClCG05G000510' => 'cla', 'ClCG05G002300' => 'cla', 'ClCG08G007650' => 'cla', 'ClCG10G021250' => 'cla', 'COL.COLO4_06218' => 'col', 'COL.COLO4_12538' => 'col', 'COL.COLO4_14775' => 'col', 'COL.COLO4_23875' => 'col', 'Cpa.g.sc141.16' => 'cpa', 'Cpa.g.sc169.16' => 'cpa', 'Cpa.g.sc244.4' => 'cpa', 'Cpa.g.sc244.5' => 'cpa', 'Cpa.g.sc29.87' => 'cpa', 'Cpa.g.sc53.115' => 'cpa', 'Cre03.g207502' => 'cre', 'Cre06.g277000' => 'cre', 'Cre09.g394050' => 'cre', 'CsaV3_3G007680' => 'csa', 'CsaV3_3G009710' => 'csa', 'CsaV3_3G034790' => 'csa', 'CsaV3_5G003750' => 'csa', 'CsaV3_6G036620' => 'csa', 'CSS0002288' => 'camsi', 'CSS0011250' => 'camsi', 'CSS0021619' => 'camsi', 'CSS0046701' => 'camsi', 'DCAR_006420' => 'dca', 'DCAR_006865' => 'dca', 'DCAR_008558' => 'dca', 'DCAR_028754' => 'dca', 'DCAR_028755' => 'dca', 'Dinv31218' => 'din', 'Dinv32371' => 'din', 'Dinv34250' => 'din', 'Dinv37156' => 'din', 'Dinv43704' => 'din', 'Duzib093G1811' => 'dzi', 'Duzib106G1622' => 'dzi', 'Duzib114G0504' => 'dzi', 'Duzib128G0338' => 'dzi', 'Duzib128G1577' => 'dzi', 'Duzib133G0104' => 'dzi', 'Duzib133G1080' => 'dzi', 'Duzib138G0324' => 'dzi', 'Duzib138G0394' => 'dzi', 'Duzib205G0122' => 'dzi', 'Duzib268G1020' => 'dzi', 'Duzib268G1359' => 'dzi', 'ECA232G3929' => 'eca', 'ECA236G2210' => 'eca', 'ECA236G2287' => 'eca', 'ECA240G4568' => 'eca', 'ECA247G0894' => 'eca', 'EL10Ac1g00200' => 'bvu', 'EL10Ac1g00886' => 'bvu', 'EL10As1g23091' => 'bvu', 'EL10As1g23092' => 'bvu', 'Eucgr.A01284' => 'egr', 'Eucgr.A01285' => 'egr', 'Eucgr.D02456' => 'egr', 'Eucgr.E00018' => 'egr', 'Eucgr.E01439' => 'egr', 'Eucgr.G02859' => 'egr', 'FAN01G0168' => 'fan', 'FAN01G0453' => 'fan', 'FAN01G2761' => 'fan', 'FAN02G1239' => 'fan', 'FAN03G0645' => 'fan', 'FAN03G2707' => 'fan', 'FAN03G2978' => 'fan', 'FAN04G0227' => 'fan', 'FAN06G0091' => 'fan', 'FAN06G1418' => 'fan', 'FAN06G1512' => 'fan', 'FAN06G1986' => 'fan', 'FAN06G2905' => 'fan', 'FAN06G4325' => 'fan', 'FAN08G0033' => 'fan', 'FAN09G0642' => 'fan', 'FAN10G1763' => 'fan', 'FAN10G2026' => 'fan', 'FAN10G2513' => 'fan', 'FAN10G3402' => 'fan', 'FAN10G3564' => 'fan', 'FAN10G3987' => 'fan', 'FAN13G1490' => 'fan', 'FAN14G5857' => 'fan', 'FAN18G1188' => 'fan', 'FvH4_5g00750' => 'fve', 'FvH4_6g13410' => 'fve', 'FvH4_7g11740' => 'fve', 'FvH4_7g17410' => 'fve', 'FvH4_7g18860' => 'fve', 'Glyma.01G099100' => 'gma', 'Glyma.01G142300' => 'gma', 'Glyma.03G025500' => 'gma', 'Glyma.03G069700' => 'gma', 'Glyma.03G260000' => 'gma', 'Glyma.09G269800' => 'gma', 'Glyma.10G208700' => 'gma', 'Glyma.18G220400' => 'gma', 'Glyma.20G182000' => 'gma', 'Gohir.A01G221726' => 'ghi', 'Gohir.A07G134600' => 'ghi', 'Gohir.A07G146000' => 'ghi', 'Gohir.A08G173900' => 'ghi', 'Gohir.A09G194900' => 'ghi', 'Gohir.A10G204100' => 'ghi', 'Gohir.A11G080600' => 'ghi', 'Gohir.A11G327500' => 'ghi', 'Gohir.A12G101800' => 'ghi', 'Gohir.D01G211200' => 'ghi', 'Gohir.D07G139200' => 'ghi', 'Gohir.D07G152100' => 'ghi', 'Gohir.D08G192600' => 'ghi', 'Gohir.D09G189200' => 'ghi', 'Gohir.D10G212000' => 'ghi', 'Gohir.D11G085200' => 'ghi', 'Gohir.D11G346400' => 'ghi', 'Gohir.D12G104800' => 'ghi', 'Gorai.001G151300' => 'gra', 'Gorai.001G174100' => 'gra', 'Gorai.002G257000' => 'gra', 'Gorai.004G202600' => 'gra', 'Gorai.007G090900' => 'gra', 'Gorai.007G376700' => 'gra', 'Gorai.008G114100' => 'gra', 'Gorai.011G237900' => 'gra', 'GSVIVG01005450001' => 'vvi', 'GSVIVG01016232001' => 'vvi', 'GSVIVG01026157001' => 'vvi', 'GSVIVG01027419001' => 'vvi', 'GSVIVG01027631001' => 'vvi', 'GSVIVG01034143001' => 'vvi', 'HanXRQChr03g0093921' => 'han', 'HanXRQChr04g0120001' => 'han', 'HanXRQChr04g0122561' => 'han', 'HanXRQChr09g0246851' => 'han', 'HanXRQChr10g0293311' => 'han', 'HanXRQChr13g0425231' => 'han', 'HanXRQChr16g0532571' => 'han', 'Haze_09050' => 'cav', 'Haze_15715' => 'cav', 'Haze_15716' => 'cav', 'Haze_16803' => 'cav', 'Haze_16850' => 'cav', 'Hma1.2p1_0301F.1_g118655' => 'hma', 'Hma1.2p1_0309F.1_g120590' => 'hma', 'Hma1.2p1_0936F.1_g238900' => 'hma', 'Hma1.2p1_3552F.1_g336740' => 'hma', 'HPP92_003520' => 'vpl', 'HPP92_006628' => 'vpl', 'HPP92_006645' => 'vpl', 'HPP92_014669' => 'vpl', 'HPP92_015077' => 'vpl', 'Hund16742' => 'sun', 'Hund17022' => 'sun', 'Lalb_Chr02g0152131' => 'lal', 'Lalb_Chr05g0225371' => 'lal', 'Lalb_Chr07g0189841' => 'lal', 'Lalb_Chr07g0192961' => 'lal', 'Lalb_Chr12g0208221' => 'lal', 'Lalb_Chr13g0291211' => 'lal', 'Lalb_Chr13g0291781' => 'lal', 'Lalb_Chr18g0044651' => 'lal', 'Lalb_Chr21g0313731' => 'lal', 'Lj1g0022533' => 'lja', 'Lj2A18T50' => 'lonja', 'Lj2A92G93' => 'lonja', 'Lj3A965T73' => 'lonja', 'Lj3g0000673' => 'lja', 'Lj3g0002666' => 'lja', 'Lj4g0016985' => 'lja', 'Lj5g0003625' => 'lja', 'Lj7A529G36' => 'lonja', 'Lj9A569T49' => 'lonja', 'Lj9A604T63' => 'lonja', 'Lsat_1_v5_gn_3_132060' => 'lsa', 'Lsat_1_v5_gn_4_68941' => 'lsa', 'Lsat_1_v5_gn_5_95580' => 'lsa', 'Lsat_1_v5_gn_7_161' => 'lsa', 'Lsat_1_v5_gn_7_7041' => 'lsa', 'Lsat_1_v5_gn_9_33481' => 'lsa', 'Lsat_1_v5_gn_9_68260' => 'lsa', 'Manes.01G073100' => 'mes', 'Manes.01G266300' => 'mes', 'Manes.02G033300' => 'mes', 'Manes.05G017900' => 'mes', 'Manes.05G046100' => 'mes', 'Manes.08G080900' => 'mes', 'Manes.10G049400' => 'mes', 'Mapoly0009s0186' => 'mpo', 'Mapoly0036s0118' => 'mpo', 'Mapoly0101s0046' => 'mpo', 'MBI04_g30218_MAGBIO' => 'mbi', 'MBI04_g35564_MAGBIO' => 'mbi', 'MBI12_g34011_MAGBIO' => 'mbi', 'MBI14_g04655_MAGBIO' => 'mbi', 'MCO07G653' => 'mco', 'MCO10G173' => 'mco', 'MD01G1087100' => 'mdo', 'MD01G1104200' => 'mdo', 'MD02G1205100' => 'mdo', 'MD04G1079200' => 'mdo', 'MD04G1131400' => 'mdo', 'MD07G1121600' => 'mdo', 'MD07G1157300' => 'mdo', 'MD07G1171000' => 'mdo', 'MD12G1144500' => 'mdo', 'Medtr1g094610' => 'mtr', 'Medtr4g021795' => 'mtr', 'Medtr4g023760' => 'mtr', 'Medtr7g118050' => 'mtr', 'MELO3C005582.2' => 'cme', 'MELO3C005989.2' => 'cme', 'MELO3C006192.2' => 'cme', 'MELO3C009248.2' => 'cme', 'MELO3C019817.2' => 'cme', 'Migut.B01625' => 'egut', 'Migut.B01915' => 'egut', 'Migut.F01721' => 'egut', 'Migut.J00314' => 'egut', 'MSTRG.20742' => 'ama', 'MSTRG.8134' => 'ama', 'Nitab4.5_0000096g0010' => 'nta', 'Nitab4.5_0000202g0030' => 'nta', 'Nitab4.5_0000216g0370' => 'nta', 'Nitab4.5_0000457g0230' => 'nta', 'Nitab4.5_0001702g0170' => 'nta', 'Nitab4.5_0003607g0010' => 'nta', 'Nitab4.5_0004917g0020' => 'nta', 'Nitab4.5_0007059g0010' => 'nta', 'Nitab4.5_0007184g0010' => 'nta', 'Nitab4.5_0007346g0020' => 'nta', 'Nn1g00410' => 'nnu', 'Nn1g01252' => 'nnu', 'Nn2g11168' => 'nnu', 'Nn2g13403' => 'nnu', 'Nn2g13760' => 'nnu', 'Nn4g26380' => 'nnu', 'Oeu000806.2' => 'oeu', 'Oeu005788.1' => 'oeu', 'Oeu006900.3' => 'oeu', 'Oeu007797.1' => 'oeu', 'Oeu011932.1' => 'oeu', 'Oeu022739.1' => 'oeu', 'Oeu037918.1' => 'oeu', 'Oeu055490.2' => 'oeu', 'Os01g0844400' => 'osa', 'Os02g0819100' => 'osa', 'Os03g0804300' => 'osa', 'Os05g0458000' => 'osa', 'Os07g0467800' => 'osa', 'Os12g0602200' => 'osa', 'Peaxi162Scf00013g03444' => 'pax', 'Peaxi162Scf00094g01120' => 'pax', 'Peaxi162Scf00191g01211' => 'pax', 'Peaxi162Scf00238g01110' => 'pax', 'Peaxi162Scf00330g00719' => 'pax', 'Peaxi162Scf00627g00018' => 'pax', 'PGR031G2686' => 'pgr', 'PGR042G0809' => 'pgr', 'PGR142G0193' => 'pgr', 'PGSC0003DMG400011066' => 'stu', 'PGSC0003DMG400012041' => 'stu', 'PGSC0003DMG400013678' => 'stu', 'PGSC0003DMG400023477' => 'stu', 'PGSC0003DMG400025956' => 'stu', 'PGSC0003DMG401019151' => 'stu', 'Phvul.006G116400' => 'pvu', 'Phvul.007G097300' => 'pvu', 'Phvul.010G015000' => 'pvu', 'Phvul.010G083900' => 'pvu', 'Potri.001G117100' => 'ptr', 'Potri.002G147300' => 'ptr', 'Potri.003G115600' => 'ptr', 'Potri.006G087400' => 'ptr', 'Potri.010G226100' => 'ptr', 'Potri.014G069200' => 'ptr', 'Potri.014G104000' => 'ptr', 'Potri.016G100200' => 'ptr', 'Pp3c10_20450' => 'ppa', 'Pp3c1_42400' => 'ppa', 'Pp3c3_24390' => 'ppa', 'Pp3c3_2860' => 'ppa', 'PRCOL_00003193' => 'pco', 'Prupe.2G144500' => 'ppe', 'Prupe.2G195700' => 'ppe', 'Prupe.2G209800' => 'ppe', 'Prupe.5G080000' => 'ppe', 'Prupe.6G257900' => 'ppe', 'Psat3g001160' => 'psa', 'Psat6g181880' => 'psa', 'Psat7g233720' => 'psa', 'PSO063G7587' => 'pso', 'PSO339G2145' => 'pso', 'PSO339G3369' => 'pso', 'PSO478G2747' => 'pso', 'PSO513G0140' => 'pso', 'PSO782G1614' => 'pso', 'PSO782G4889' => 'pso', 'PSO782G5485' => 'pso', 'PSO801G0241' => 'pso', 'QL07p048854' => 'qlo', 'QL08p046745' => 'qlo', 'QL08p052606' => 'qlo', 'QL08p053414' => 'qlo', 'QL08p054868' => 'qlo', 'RcHm_v2.0_Chr1g0350251' => 'rch', 'RcHm_v2.0_Chr1g0360851' => 'rch', 'RcHm_v2.0_Chr1g0362791' => 'rch', 'RcHm_v2.0_Chr3g0466281' => 'rch', 'RcHm_v2.0_Chr7g0201481' => 'rch', 'Rhsim01G0148600' => 'rsi', 'Rhsim05G0194400' => 'rsi', 'Rhsim07G0000700' => 'rsi', 'Rhsim07G0000800' => 'rsi', 'Rhsim07G0027900' => 'rsi', 'Rhsim09G0149500' => 'rsi', 'RhsimUnG0186900' => 'rsi', 'Sabra01G0089900' => 'sbr', 'Sabra02G0114700' => 'sbr', 'Sabra02G0116300' => 'sbr', 'Sabra03G0080100' => 'sbr', 'Sabra08G0024300' => 'sbr', 'Sabra10G0174300' => 'sbr', 'Sabra14G0048900' => 'sbr', 'Sabra14G0076500' => 'sbr', 'SalBow5G2513' => 'sbo', 'Sc01g0002300' => 'sci', 'Sc01g0004450' => 'sci', 'Sc06g0001680' => 'sci', 'Sc23g0003580' => 'sci', 'Sed0000913' => 'sed', 'Sed0001655' => 'sed', 'Sed0007745' => 'sed', 'Sed0010951' => 'sed', 'Sed0017599' => 'sed', 'Sed0021405' => 'sed', 'Sed0022810' => 'sed', 'SEGI_07099' => 'sgi', 'SEGI_11931' => 'sgi', 'SEGI_13187' => 'sgi', 'SEGI_29958' => 'sgi', 'SEGI_36351' => 'sgi', 'SGA_v2.0_scaffold126G33770' => 'sas', 'SGA_v2.0_scaffold153G37003' => 'sas', 'SGA_v2.0_scaffold2G01359' => 'sas', 'SGA_v2.0_scaffold5G03064' => 'sas', 'SGA_v2.0_scaffold95G28903' => 'sas', 'SHI12701' => 'shi', 'SHI26410' => 'shi', 'SHI38997' => 'shi', 'SHI53759' => 'shi', 'SHI53886' => 'shi', 'SHI54714' => 'shi', 'SMO011G0041' => 'smo', 'SMO146G0251' => 'smo', 'SMO160G0004' => 'smo', 'SMO174G0057' => 'smo', 'SMO244G0089' => 'smo', 'SMO296G0011' => 'smo', 'Solyc01g091280.3' => 'sly', 'Solyc05g047610.3' => 'sly', 'Solyc05g047640.3' => 'sly', 'Solyc05g055630.3' => 'sly', 'Solyc10g018160.2' => 'sly', 'Solyc10g084820.2' => 'sly', 'Solyc10g086565.2' => 'sly', 'Sopen01g037030' => 'spe', 'Sopen05g027920' => 'spe', 'Sopen05g034070' => 'spe', 'Sopen10g007260' => 'spe', 'Sopen10g034260' => 'spe', 'Sopen10g035950' => 'spe', 'Sp3g07710' => 'spa', 'Sp4g27420' => 'spa', 'Sp5g02450' => 'spa', 'Sp6g01280' => 'spa', 'Sp6g38480' => 'spa', 'Sp7g20780' => 'spa', 'TAR374G1413' => 'tar', 'TAR623G1777' => 'tar', 'TAR629G2370' => 'tar', 'TAR633G1759' => 'tar', 'TAR636G3387' => 'tar', 'THA.LOC104802447' => 'tha', 'THA.LOC104813916' => 'tha', 'THA.LOC104816423' => 'tha', 'THA.LOC104817246' => 'tha', 'THA.LOC104825895' => 'tha', 'Thecc.01G335200' => 'tca', 'Thecc.01G377400' => 'tca', 'Thecc.03G262200' => 'tca', 'Thecc.05G036800' => 'tca', 'Thecc.10G080500' => 'tca', 'Thecc.10G080800' => 'tca', 'Thhalv10001560m.g' => 'esa', 'Thhalv10006120m.g' => 'esa', 'Thhalv10014375m.g' => 'esa', 'Thhalv10021264m.g' => 'esa', 'Thhalv10028856m.g' => 'esa', 'TPR.G1914' => 'tpr', 'TPR.G4757' => 'tpr', 'TPR.G5595' => 'tpr', 'TWI14G0952' => 'twi', 'TWI14G1307' => 'twi', 'TWI38G2143' => 'twi', 'TWI59G0826' => 'twi', 'TWI77G0527' => 'twi', 'TWI81G0150' => 'twi', 'unitig_21.g21018' => 'ugi', 'unitig_26.g9725' => 'ugi', 'unitig_744.g24653' => 'ugi', 'unitig_749.g13778' => 'ugi', 'unitig_899.g15035' => 'ugi', 'vmacro04296' => 'vma', 'vmacro04852' => 'vma', 'vmacro13404' => 'vma', 'vmacro20169' => 'vma', 'vmacro21014' => 'vma', 'VMungo0331G0237' => 'vmu', 'VMungo0331G0706' => 'vmu', 'VMungo0331G1361' => 'vmu', 'VMungo0331G1489' => 'vmu', 'VMungo0540G1037' => 'vmu', 'VMungo0720G2487' => 'vmu', 'VMungo0720G2721' => 'vmu', 'Zm00001eb086860' => 'zma', 'Zm00001eb104760' => 'zma', 'Zm00001eb148220' => 'zma', 'Zm00001eb259030' => 'zma', 'Zm00001eb289590' => 'zma', 'Zm00001eb420150' => 'zma' ), 'gf_id' => 'HOM05D000968', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000968' ), 'data_identifier' => 'HOM05D000968', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000968', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p31690' => 'bna', 'A03p36040' => 'bna', 'A03p53730' => 'bna', 'A04p01410' => 'bna', 'A05p05420' => 'bna', 'A05p39630' => 'bna', 'A05p39640' => 'bna', 'A09p00970' => 'bna', 'A09p53060' => 'bna', 'A10p31890' => 'bna', 'Aa31LG10G15040' => 'aar', 'Aa31LG1G21090' => 'aar', 'Aa31LG1G26900' => 'aar', 'Aa31LG3G1820' => 'aar', 'Aa31LG5G1100' => 'aar', 'Aa31LG6G4740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2265' => 'aag', 'Actinidia07998' => 'ach', 'Actinidia11266' => 'ach', 'Actinidia12682' => 'ach', 'Actinidia26479' => 'ach', 'Actinidia31406' => 'ach', 'Actinidia32437' => 'ach', 'Actinidia38862' => 'ach', 'Ah.05g174230' => 'amhyb', 'Ah.05g179070' => 'amhyb', 'Ah.05g179090' => 'amhyb', 'Ah.12g059950' => 'amhyb', 'AL3G20480' => 'aly', 'AL4G44520' => 'aly', 'AL5G43110' => 'aly', 'AL6G13890' => 'aly', 'AL6G52620' => 'aly', 'AL7G30830' => 'aly', 'Aqoxy1G00899' => 'aox', 'Aqoxy5G04333' => 'aox', 'Aqoxy7G00641' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3IZ0NN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4EF6AW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W9P8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79GA3M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C43NQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFCU6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G95YVJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCHK29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LU1UG8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX91RN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGB4B1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8DA0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9H7JI' => 'arhy', 'AT3G09320' => 'ath', 'AT3G60800' => 'ath', 'AT4G00840' => 'ath', 'AT4G22750' => 'ath', 'AT5G04270' => 'ath', 'ATR0090G003' => 'atr', 'ATR0559G349' => 'atr', 'ATR0680G261' => 'atr', 'ATR0810G048' => 'atr', 'Atru.chr12.831' => 'acertr', 'Atru.chr5.303' => 'acertr', 'Atru.chr5.748' => 'acertr', 'Atru.chr8.1999' => 'acertr', 'Atru.chr9.1436' => 'acertr', 'AUR62004211' => 'cqu', 'AUR62004548' => 'cqu', 'AUR62013637' => 'cqu', 'AUR62022662' => 'cqu', 'AUR62025777' => 'cqu', 'AUR62042386' => 'cqu', 'BcaB01g02310' => 'bca', 'BcaB01g06062' => 'bca', 'BcaB02g08975' => 'bca', 'BcaB02g08980' => 'bca', 'BcaC01g04228' => 'bca', 'BcaC01g06830' => 'bca', 'BcaC02g10186' => 'bca', 'BcaC02g12214' => 'bca', 'BcaC04g24101' => 'bca', 'BcaC05g29520' => 'bca', 'BcaC05g29661' => 'bca', 'BcaC06g32130' => 'bca', 'BcaC06g32131' => 'bca', 'BcaC07g40601' => 'bca', 'BcaC07g42641' => 'bca', 'BcaNung01038' => 'bca', 'BcaNung01676' => 'bca', 'BcaNung02480' => 'bca', 'BcaNung07376' => 'bca', 'BolC3t16146H' => 'bol', 'BolC3t16637H' => 'bol', 'BolC4t22257H' => 'bol', 'BolC4t24728H' => 'bol', 'BolC5t34517H' => 'bol', 'BolC7t45703H' => 'bol', 'BolC8t51166H' => 'bol', 'BolC9t53038H' => 'bol', 'BolC9t60000H' => 'bol', 'BraA01t01345Z' => 'bra', 'BraA01t01346Z' => 'bra', 'BraA01t01348Z' => 'bra', 'BraA03t12347Z' => 'bra', 'BraA03t12775Z' => 'bra', 'BraA03t14439Z' => 'bra', 'BraA04t15860Z' => 'bra', 'BraA05t19511Z' => 'bra', 'BraA05t22746Z' => 'bra', 'BraA09t35767Z' => 'bra', 'BraA09t40732Z' => 'bra', 'BraA10t45233Z' => 'bra', 'C03p38720' => 'bna', 'C03p43680' => 'bna', 'C04p06350' => 'bna', 'C04p31800' => 'bna', 'C05p58680' => 'bna', 'C07p52110' => 'bna', 'C08p35760' => 'bna', 'C09p01050' => 'bna', 'C09p72600' => 'bna', 'CAN.G106.2' => 'can', 'CAN.G1482.1' => 'can', 'CAN.G324.12' => 'can', 'CAN.G388.20' => 'can', 'CAN.G412.7' => 'can', 'CAN.G694.32' => 'can', 'CAN.G92.12' => 'can', 'CANSAT11G2353' => 'cansat', 'CANSAT21G1398' => 'cansat', 'CANSAT56G2456' => 'cansat', 'CANSAT56G3031' => 'cansat', 'CANSAT56G4539' => 'cansat', 'CARHR083680' => 'chi', 'CARHR171190' => 'chi', 'CARHR209010' => 'chi', 'CARHR229680' => 'chi', 'CARHR249490' => 'chi', 'Carub.0003s0844' => 'cru', 'Carub.0005s2755' => 'cru', 'Carub.0006s0322' => 'cru', 'Carub.0006s3586' => 'cru', 'Carub.0007s1855' => 'cru', 'Ca_07808_v3' => 'car', 'Ca_09535_v3' => 'car', 'Ca_10548_v3' => 'car', 'Ca_19913_v3' => 'car', 'Ca_19916_v3' => 'car', 'Ca_19975_v3' => 'car', 'CBR_g22876' => 'cbr', 'CBR_g22879' => 'cbr', 'CBR_g38491' => 'cbr', 'CBR_g54185' => 'cbr', 'CBR_g54190' => 'cbr', 'Cc02_g11020' => 'ccan', 'Cc02_g23920' => 'ccan', 'Cc02_g39860' => 'ccan', 'Cc02_g39870' => 'ccan', 'Cc03_g06760' => 'ccan', 'Cc06_g02450' => 'ccan', 'Cc09_g09450' => 'ccan', 'CDE02G1959' => 'cde', 'CDE04G0600' => 'cde', 'CDE07G1996' => 'cde', 'CDE07G2078' => 'cde', 'CDE11G0611' => 'cde', 'Cfa001683' => 'cfa', 'Cfa001734' => 'cfa', 'Cfa001737' => 'cfa', 'Cfa003751' => 'cfa', 'Cfa012019' => 'cfa', 'Cfa017353' => 'cfa', 'Cfa017732' => 'cfa', 'Cfa022464' => 'cfa', 'Ciclev10012400m.g' => 'ccl', 'Ciclev10021242m.g' => 'ccl', 'Ciclev10021302m.g' => 'ccl', 'Ciclev10021463m.g' => 'ccl', 'Ciclev10032359m.g' => 'ccl', 'CiPaw.01G081000' => 'cil', 'CiPaw.01G262500' => 'cil', 'CiPaw.01G269800' => 'cil', 'CiPaw.02G168400' => 'cil', 'CiPaw.05G119500' => 'cil', 'CiPaw.11G147300' => 'cil', 'ClCG01G003630' => 'cla', 'ClCG05G000510' => 'cla', 'ClCG05G002300' => 'cla', 'ClCG08G007650' => 'cla', 'ClCG10G021250' => 'cla', 'COL.COLO4_06218' => 'col', 'COL.COLO4_12538' => 'col', 'COL.COLO4_14775' => 'col', 'COL.COLO4_23875' => 'col', 'Cpa.g.sc141.16' => 'cpa', 'Cpa.g.sc169.16' => 'cpa', 'Cpa.g.sc244.4' => 'cpa', 'Cpa.g.sc244.5' => 'cpa', 'Cpa.g.sc29.87' => 'cpa', 'Cpa.g.sc53.115' => 'cpa', 'Cre03.g207502' => 'cre', 'Cre06.g277000' => 'cre', 'Cre09.g394050' => 'cre', 'CsaV3_3G007680' => 'csa', 'CsaV3_3G009710' => 'csa', 'CsaV3_3G034790' => 'csa', 'CsaV3_5G003750' => 'csa', 'CsaV3_6G036620' => 'csa', 'CSS0002288' => 'camsi', 'CSS0011250' => 'camsi', 'CSS0021619' => 'camsi', 'CSS0046701' => 'camsi', 'DCAR_006420' => 'dca', 'DCAR_006865' => 'dca', 'DCAR_008558' => 'dca', 'DCAR_028754' => 'dca', 'DCAR_028755' => 'dca', 'Dinv31218' => 'din', 'Dinv32371' => 'din', 'Dinv34250' => 'din', 'Dinv37156' => 'din', 'Dinv43704' => 'din', 'Duzib093G1811' => 'dzi', 'Duzib106G1622' => 'dzi', 'Duzib114G0504' => 'dzi', 'Duzib128G0338' => 'dzi', 'Duzib128G1577' => 'dzi', 'Duzib133G0104' => 'dzi', 'Duzib133G1080' => 'dzi', 'Duzib138G0324' => 'dzi', 'Duzib138G0394' => 'dzi', 'Duzib205G0122' => 'dzi', 'Duzib268G1020' => 'dzi', 'Duzib268G1359' => 'dzi', 'ECA232G3929' => 'eca', 'ECA236G2210' => 'eca', 'ECA236G2287' => 'eca', 'ECA240G4568' => 'eca', 'ECA247G0894' => 'eca', 'EL10Ac1g00200' => 'bvu', 'EL10Ac1g00886' => 'bvu', 'EL10As1g23091' => 'bvu', 'EL10As1g23092' => 'bvu', 'Eucgr.A01284' => 'egr', 'Eucgr.A01285' => 'egr', 'Eucgr.D02456' => 'egr', 'Eucgr.E00018' => 'egr', 'Eucgr.E01439' => 'egr', 'Eucgr.G02859' => 'egr', 'FAN01G0168' => 'fan', 'FAN01G0453' => 'fan', 'FAN01G2761' => 'fan', 'FAN02G1239' => 'fan', 'FAN03G0645' => 'fan', 'FAN03G2707' => 'fan', 'FAN03G2978' => 'fan', 'FAN04G0227' => 'fan', 'FAN06G0091' => 'fan', 'FAN06G1418' => 'fan', 'FAN06G1512' => 'fan', 'FAN06G1986' => 'fan', 'FAN06G2905' => 'fan', 'FAN06G4325' => 'fan', 'FAN08G0033' => 'fan', 'FAN09G0642' => 'fan', 'FAN10G1763' => 'fan', 'FAN10G2026' => 'fan', 'FAN10G2513' => 'fan', 'FAN10G3402' => 'fan', 'FAN10G3564' => 'fan', 'FAN10G3987' => 'fan', 'FAN13G1490' => 'fan', 'FAN14G5857' => 'fan', 'FAN18G1188' => 'fan', 'FvH4_5g00750' => 'fve', 'FvH4_6g13410' => 'fve', 'FvH4_7g11740' => 'fve', 'FvH4_7g17410' => 'fve', 'FvH4_7g18860' => 'fve', 'Glyma.01G099100' => 'gma', 'Glyma.01G142300' => 'gma', 'Glyma.03G025500' => 'gma', 'Glyma.03G069700' => 'gma', 'Glyma.03G260000' => 'gma', 'Glyma.09G269800' => 'gma', 'Glyma.10G208700' => 'gma', 'Glyma.18G220400' => 'gma', 'Glyma.20G182000' => 'gma', 'Gohir.A01G221726' => 'ghi', 'Gohir.A07G134600' => 'ghi', 'Gohir.A07G146000' => 'ghi', 'Gohir.A08G173900' => 'ghi', 'Gohir.A09G194900' => 'ghi', 'Gohir.A10G204100' => 'ghi', 'Gohir.A11G080600' => 'ghi', 'Gohir.A11G327500' => 'ghi', 'Gohir.A12G101800' => 'ghi', 'Gohir.D01G211200' => 'ghi', 'Gohir.D07G139200' => 'ghi', 'Gohir.D07G152100' => 'ghi', 'Gohir.D08G192600' => 'ghi', 'Gohir.D09G189200' => 'ghi', 'Gohir.D10G212000' => 'ghi', 'Gohir.D11G085200' => 'ghi', 'Gohir.D11G346400' => 'ghi', 'Gohir.D12G104800' => 'ghi', 'Gorai.001G151300' => 'gra', 'Gorai.001G174100' => 'gra', 'Gorai.002G257000' => 'gra', 'Gorai.004G202600' => 'gra', 'Gorai.007G090900' => 'gra', 'Gorai.007G376700' => 'gra', 'Gorai.008G114100' => 'gra', 'Gorai.011G237900' => 'gra', 'GSVIVG01005450001' => 'vvi', 'GSVIVG01016232001' => 'vvi', 'GSVIVG01026157001' => 'vvi', 'GSVIVG01027419001' => 'vvi', 'GSVIVG01027631001' => 'vvi', 'GSVIVG01034143001' => 'vvi', 'HanXRQChr03g0093921' => 'han', 'HanXRQChr04g0120001' => 'han', 'HanXRQChr04g0122561' => 'han', 'HanXRQChr09g0246851' => 'han', 'HanXRQChr10g0293311' => 'han', 'HanXRQChr13g0425231' => 'han', 'HanXRQChr16g0532571' => 'han', 'Haze_09050' => 'cav', 'Haze_15715' => 'cav', 'Haze_15716' => 'cav', 'Haze_16803' => 'cav', 'Haze_16850' => 'cav', 'Hma1.2p1_0301F.1_g118655' => 'hma', 'Hma1.2p1_0309F.1_g120590' => 'hma', 'Hma1.2p1_0936F.1_g238900' => 'hma', 'Hma1.2p1_3552F.1_g336740' => 'hma', 'HPP92_003520' => 'vpl', 'HPP92_006628' => 'vpl', 'HPP92_006645' => 'vpl', 'HPP92_014669' => 'vpl', 'HPP92_015077' => 'vpl', 'Hund16742' => 'sun', 'Hund17022' => 'sun', 'Lalb_Chr02g0152131' => 'lal', 'Lalb_Chr05g0225371' => 'lal', 'Lalb_Chr07g0189841' => 'lal', 'Lalb_Chr07g0192961' => 'lal', 'Lalb_Chr12g0208221' => 'lal', 'Lalb_Chr13g0291211' => 'lal', 'Lalb_Chr13g0291781' => 'lal', 'Lalb_Chr18g0044651' => 'lal', 'Lalb_Chr21g0313731' => 'lal', 'Lj1g0022533' => 'lja', 'Lj2A18T50' => 'lonja', 'Lj2A92G93' => 'lonja', 'Lj3A965T73' => 'lonja', 'Lj3g0000673' => 'lja', 'Lj3g0002666' => 'lja', 'Lj4g0016985' => 'lja', 'Lj5g0003625' => 'lja', 'Lj7A529G36' => 'lonja', 'Lj9A569T49' => 'lonja', 'Lj9A604T63' => 'lonja', 'Lsat_1_v5_gn_3_132060' => 'lsa', 'Lsat_1_v5_gn_4_68941' => 'lsa', 'Lsat_1_v5_gn_5_95580' => 'lsa', 'Lsat_1_v5_gn_7_161' => 'lsa', 'Lsat_1_v5_gn_7_7041' => 'lsa', 'Lsat_1_v5_gn_9_33481' => 'lsa', 'Lsat_1_v5_gn_9_68260' => 'lsa', 'Manes.01G073100' => 'mes', 'Manes.01G266300' => 'mes', 'Manes.02G033300' => 'mes', 'Manes.05G017900' => 'mes', 'Manes.05G046100' => 'mes', 'Manes.08G080900' => 'mes', 'Manes.10G049400' => 'mes', 'Mapoly0009s0186' => 'mpo', 'Mapoly0036s0118' => 'mpo', 'Mapoly0101s0046' => 'mpo', 'MBI04_g30218_MAGBIO' => 'mbi', 'MBI04_g35564_MAGBIO' => 'mbi', 'MBI12_g34011_MAGBIO' => 'mbi', 'MBI14_g04655_MAGBIO' => 'mbi', 'MCO07G653' => 'mco', 'MCO10G173' => 'mco', 'MD01G1087100' => 'mdo', 'MD01G1104200' => 'mdo', 'MD02G1205100' => 'mdo', 'MD04G1079200' => 'mdo', 'MD04G1131400' => 'mdo', 'MD07G1121600' => 'mdo', 'MD07G1157300' => 'mdo', 'MD07G1171000' => 'mdo', 'MD12G1144500' => 'mdo', 'Medtr1g094610' => 'mtr', 'Medtr4g021795' => 'mtr', 'Medtr4g023760' => 'mtr', 'Medtr7g118050' => 'mtr', 'MELO3C005582.2' => 'cme', 'MELO3C005989.2' => 'cme', 'MELO3C006192.2' => 'cme', 'MELO3C009248.2' => 'cme', 'MELO3C019817.2' => 'cme', 'Migut.B01625' => 'egut', 'Migut.B01915' => 'egut', 'Migut.F01721' => 'egut', 'Migut.J00314' => 'egut', 'MSTRG.20742' => 'ama', 'MSTRG.8134' => 'ama', 'Nitab4.5_0000096g0010' => 'nta', 'Nitab4.5_0000202g0030' => 'nta', 'Nitab4.5_0000216g0370' => 'nta', 'Nitab4.5_0000457g0230' => 'nta', 'Nitab4.5_0001702g0170' => 'nta', 'Nitab4.5_0003607g0010' => 'nta', 'Nitab4.5_0004917g0020' => 'nta', 'Nitab4.5_0007059g0010' => 'nta', 'Nitab4.5_0007184g0010' => 'nta', 'Nitab4.5_0007346g0020' => 'nta', 'Nn1g00410' => 'nnu', 'Nn1g01252' => 'nnu', 'Nn2g11168' => 'nnu', 'Nn2g13403' => 'nnu', 'Nn2g13760' => 'nnu', 'Nn4g26380' => 'nnu', 'Oeu000806.2' => 'oeu', 'Oeu005788.1' => 'oeu', 'Oeu006900.3' => 'oeu', 'Oeu007797.1' => 'oeu', 'Oeu011932.1' => 'oeu', 'Oeu022739.1' => 'oeu', 'Oeu037918.1' => 'oeu', 'Oeu055490.2' => 'oeu', 'Os01g0844400' => 'osa', 'Os02g0819100' => 'osa', 'Os03g0804300' => 'osa', 'Os05g0458000' => 'osa', 'Os07g0467800' => 'osa', 'Os12g0602200' => 'osa', 'Peaxi162Scf00013g03444' => 'pax', 'Peaxi162Scf00094g01120' => 'pax', 'Peaxi162Scf00191g01211' => 'pax', 'Peaxi162Scf00238g01110' => 'pax', 'Peaxi162Scf00330g00719' => 'pax', 'Peaxi162Scf00627g00018' => 'pax', 'PGR031G2686' => 'pgr', 'PGR042G0809' => 'pgr', 'PGR142G0193' => 'pgr', 'PGSC0003DMG400011066' => 'stu', 'PGSC0003DMG400012041' => 'stu', 'PGSC0003DMG400013678' => 'stu', 'PGSC0003DMG400023477' => 'stu', 'PGSC0003DMG400025956' => 'stu', 'PGSC0003DMG401019151' => 'stu', 'Phvul.006G116400' => 'pvu', 'Phvul.007G097300' => 'pvu', 'Phvul.010G015000' => 'pvu', 'Phvul.010G083900' => 'pvu', 'Potri.001G117100' => 'ptr', 'Potri.002G147300' => 'ptr', 'Potri.003G115600' => 'ptr', 'Potri.006G087400' => 'ptr', 'Potri.010G226100' => 'ptr', 'Potri.014G069200' => 'ptr', 'Potri.014G104000' => 'ptr', 'Potri.016G100200' => 'ptr', 'Pp3c10_20450' => 'ppa', 'Pp3c1_42400' => 'ppa', 'Pp3c3_24390' => 'ppa', 'Pp3c3_2860' => 'ppa', 'PRCOL_00003193' => 'pco', 'Prupe.2G144500' => 'ppe', 'Prupe.2G195700' => 'ppe', 'Prupe.2G209800' => 'ppe', 'Prupe.5G080000' => 'ppe', 'Prupe.6G257900' => 'ppe', 'Psat3g001160' => 'psa', 'Psat6g181880' => 'psa', 'Psat7g233720' => 'psa', 'PSO063G7587' => 'pso', 'PSO339G2145' => 'pso', 'PSO339G3369' => 'pso', 'PSO478G2747' => 'pso', 'PSO513G0140' => 'pso', 'PSO782G1614' => 'pso', 'PSO782G4889' => 'pso', 'PSO782G5485' => 'pso', 'PSO801G0241' => 'pso', 'QL07p048854' => 'qlo', 'QL08p046745' => 'qlo', 'QL08p052606' => 'qlo', 'QL08p053414' => 'qlo', 'QL08p054868' => 'qlo', 'RcHm_v2.0_Chr1g0350251' => 'rch', 'RcHm_v2.0_Chr1g0360851' => 'rch', 'RcHm_v2.0_Chr1g0362791' => 'rch', 'RcHm_v2.0_Chr3g0466281' => 'rch', 'RcHm_v2.0_Chr7g0201481' => 'rch', 'Rhsim01G0148600' => 'rsi', 'Rhsim05G0194400' => 'rsi', 'Rhsim07G0000700' => 'rsi', 'Rhsim07G0000800' => 'rsi', 'Rhsim07G0027900' => 'rsi', 'Rhsim09G0149500' => 'rsi', 'RhsimUnG0186900' => 'rsi', 'Sabra01G0089900' => 'sbr', 'Sabra02G0114700' => 'sbr', 'Sabra02G0116300' => 'sbr', 'Sabra03G0080100' => 'sbr', 'Sabra08G0024300' => 'sbr', 'Sabra10G0174300' => 'sbr', 'Sabra14G0048900' => 'sbr', 'Sabra14G0076500' => 'sbr', 'SalBow5G2513' => 'sbo', 'Sc01g0002300' => 'sci', 'Sc01g0004450' => 'sci', 'Sc06g0001680' => 'sci', 'Sc23g0003580' => 'sci', 'Sed0000913' => 'sed', 'Sed0001655' => 'sed', 'Sed0007745' => 'sed', 'Sed0010951' => 'sed', 'Sed0017599' => 'sed', 'Sed0021405' => 'sed', 'Sed0022810' => 'sed', 'SEGI_07099' => 'sgi', 'SEGI_11931' => 'sgi', 'SEGI_13187' => 'sgi', 'SEGI_29958' => 'sgi', 'SEGI_36351' => 'sgi', 'SGA_v2.0_scaffold126G33770' => 'sas', 'SGA_v2.0_scaffold153G37003' => 'sas', 'SGA_v2.0_scaffold2G01359' => 'sas', 'SGA_v2.0_scaffold5G03064' => 'sas', 'SGA_v2.0_scaffold95G28903' => 'sas', 'SHI12701' => 'shi', 'SHI26410' => 'shi', 'SHI38997' => 'shi', 'SHI53759' => 'shi', 'SHI53886' => 'shi', 'SHI54714' => 'shi', 'SMO011G0041' => 'smo', 'SMO146G0251' => 'smo', 'SMO160G0004' => 'smo', 'SMO174G0057' => 'smo', 'SMO244G0089' => 'smo', 'SMO296G0011' => 'smo', 'Solyc01g091280.3' => 'sly', 'Solyc05g047610.3' => 'sly', 'Solyc05g047640.3' => 'sly', 'Solyc05g055630.3' => 'sly', 'Solyc10g018160.2' => 'sly', 'Solyc10g084820.2' => 'sly', 'Solyc10g086565.2' => 'sly', 'Sopen01g037030' => 'spe', 'Sopen05g027920' => 'spe', 'Sopen05g034070' => 'spe', 'Sopen10g007260' => 'spe', 'Sopen10g034260' => 'spe', 'Sopen10g035950' => 'spe', 'Sp3g07710' => 'spa', 'Sp4g27420' => 'spa', 'Sp5g02450' => 'spa', 'Sp6g01280' => 'spa', 'Sp6g38480' => 'spa', 'Sp7g20780' => 'spa', 'TAR374G1413' => 'tar', 'TAR623G1777' => 'tar', 'TAR629G2370' => 'tar', 'TAR633G1759' => 'tar', 'TAR636G3387' => 'tar', 'THA.LOC104802447' => 'tha', 'THA.LOC104813916' => 'tha', 'THA.LOC104816423' => 'tha', 'THA.LOC104817246' => 'tha', 'THA.LOC104825895' => 'tha', 'Thecc.01G335200' => 'tca', 'Thecc.01G377400' => 'tca', 'Thecc.03G262200' => 'tca', 'Thecc.05G036800' => 'tca', 'Thecc.10G080500' => 'tca', 'Thecc.10G080800' => 'tca', 'Thhalv10001560m.g' => 'esa', 'Thhalv10006120m.g' => 'esa', 'Thhalv10014375m.g' => 'esa', 'Thhalv10021264m.g' => 'esa', 'Thhalv10028856m.g' => 'esa', 'TPR.G1914' => 'tpr', 'TPR.G4757' => 'tpr', 'TPR.G5595' => 'tpr', 'TWI14G0952' => 'twi', 'TWI14G1307' => 'twi', 'TWI38G2143' => 'twi', 'TWI59G0826' => 'twi', 'TWI77G0527' => 'twi', 'TWI81G0150' => 'twi', 'unitig_21.g21018' => 'ugi', 'unitig_26.g9725' => 'ugi', 'unitig_744.g24653' => 'ugi', 'unitig_749.g13778' => 'ugi', 'unitig_899.g15035' => 'ugi', 'vmacro04296' => 'vma', 'vmacro04852' => 'vma', 'vmacro13404' => 'vma', 'vmacro20169' => 'vma', 'vmacro21014' => 'vma', 'VMungo0331G0237' => 'vmu', 'VMungo0331G0706' => 'vmu', 'VMungo0331G1361' => 'vmu', 'VMungo0331G1489' => 'vmu', 'VMungo0540G1037' => 'vmu', 'VMungo0720G2487' => 'vmu', 'VMungo0720G2721' => 'vmu', 'Zm00001eb086860' => 'zma', 'Zm00001eb104760' => 'zma', 'Zm00001eb148220' => 'zma', 'Zm00001eb259030' => 'zma', 'Zm00001eb289590' => 'zma', 'Zm00001eb420150' => 'zma' ) $gf_id = 'HOM05D000968' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000968' ) $data_identifier = 'HOM05D000968' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 19, 'bol' => (int) 9, 'bra' => (int) 12, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 5, 'ccan' => (int) 7, 'cde' => (int) 5, 'cfa' => (int) 8, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 4, 'dca' => (int) 5, 'din' => (int) 5, 'dzi' => (int) 12, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 25, 'fve' => (int) 5, 'gma' => (int) 9, 'ghi' => (int) 18, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 7, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 5, 'sun' => (int) 2, 'lal' => (int) 9, 'lja' => (int) 5, 'lonja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 9, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 2, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 3, 'stu' => (int) 6, 'pvu' => (int) 4, 'ptr' => (int) 8, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 3, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 1, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 5, 'sas' => (int) 5, 'shi' => (int) 6, 'smo' => (int) 6, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 3, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420150' $species_info = array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ) $local_species = 'ppa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000968', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p31690' => 'bna', 'A03p36040' => 'bna', 'A03p53730' => 'bna', 'A04p01410' => 'bna', 'A05p05420' => 'bna', 'A05p39630' => 'bna', 'A05p39640' => 'bna', 'A09p00970' => 'bna', 'A09p53060' => 'bna', 'A10p31890' => 'bna', 'Aa31LG10G15040' => 'aar', 'Aa31LG1G21090' => 'aar', 'Aa31LG1G26900' => 'aar', 'Aa31LG3G1820' => 'aar', 'Aa31LG5G1100' => 'aar', 'Aa31LG6G4740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2265' => 'aag', 'Actinidia07998' => 'ach', 'Actinidia11266' => 'ach', 'Actinidia12682' => 'ach', 'Actinidia26479' => 'ach', 'Actinidia31406' => 'ach', 'Actinidia32437' => 'ach', 'Actinidia38862' => 'ach', 'Ah.05g174230' => 'amhyb', 'Ah.05g179070' => 'amhyb', 'Ah.05g179090' => 'amhyb', 'Ah.12g059950' => 'amhyb', 'AL3G20480' => 'aly', 'AL4G44520' => 'aly', 'AL5G43110' => 'aly', 'AL6G13890' => 'aly', 'AL6G52620' => 'aly', 'AL7G30830' => 'aly', 'Aqoxy1G00899' => 'aox', 'Aqoxy5G04333' => 'aox', 'Aqoxy7G00641' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3IZ0NN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4EF6AW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W9P8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79GA3M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C43NQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFCU6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G95YVJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCHK29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LU1UG8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX91RN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGB4B1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8DA0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9H7JI' => 'arhy', 'AT3G09320' => 'ath', 'AT3G60800' => 'ath', 'AT4G00840' => 'ath', 'AT4G22750' => 'ath', 'AT5G04270' => 'ath', 'ATR0090G003' => 'atr', 'ATR0559G349' => 'atr', 'ATR0680G261' => 'atr', 'ATR0810G048' => 'atr', 'Atru.chr12.831' => 'acertr', 'Atru.chr5.303' => 'acertr', 'Atru.chr5.748' => 'acertr', 'Atru.chr8.1999' => 'acertr', 'Atru.chr9.1436' => 'acertr', 'AUR62004211' => 'cqu', 'AUR62004548' => 'cqu', 'AUR62013637' => 'cqu', 'AUR62022662' => 'cqu', 'AUR62025777' => 'cqu', 'AUR62042386' => 'cqu', 'BcaB01g02310' => 'bca', 'BcaB01g06062' => 'bca', 'BcaB02g08975' => 'bca', 'BcaB02g08980' => 'bca', 'BcaC01g04228' => 'bca', 'BcaC01g06830' => 'bca', 'BcaC02g10186' => 'bca', 'BcaC02g12214' => 'bca', 'BcaC04g24101' => 'bca', 'BcaC05g29520' => 'bca', 'BcaC05g29661' => 'bca', 'BcaC06g32130' => 'bca', 'BcaC06g32131' => 'bca', 'BcaC07g40601' => 'bca', 'BcaC07g42641' => 'bca', 'BcaNung01038' => 'bca', 'BcaNung01676' => 'bca', 'BcaNung02480' => 'bca', 'BcaNung07376' => 'bca', 'BolC3t16146H' => 'bol', 'BolC3t16637H' => 'bol', 'BolC4t22257H' => 'bol', 'BolC4t24728H' => 'bol', 'BolC5t34517H' => 'bol', 'BolC7t45703H' => 'bol', 'BolC8t51166H' => 'bol', 'BolC9t53038H' => 'bol', 'BolC9t60000H' => 'bol', 'BraA01t01345Z' => 'bra', 'BraA01t01346Z' => 'bra', 'BraA01t01348Z' => 'bra', 'BraA03t12347Z' => 'bra', 'BraA03t12775Z' => 'bra', 'BraA03t14439Z' => 'bra', 'BraA04t15860Z' => 'bra', 'BraA05t19511Z' => 'bra', 'BraA05t22746Z' => 'bra', 'BraA09t35767Z' => 'bra', 'BraA09t40732Z' => 'bra', 'BraA10t45233Z' => 'bra', 'C03p38720' => 'bna', 'C03p43680' => 'bna', 'C04p06350' => 'bna', 'C04p31800' => 'bna', 'C05p58680' => 'bna', 'C07p52110' => 'bna', 'C08p35760' => 'bna', 'C09p01050' => 'bna', 'C09p72600' => 'bna', 'CAN.G106.2' => 'can', 'CAN.G1482.1' => 'can', 'CAN.G324.12' => 'can', 'CAN.G388.20' => 'can', 'CAN.G412.7' => 'can', 'CAN.G694.32' => 'can', 'CAN.G92.12' => 'can', 'CANSAT11G2353' => 'cansat', 'CANSAT21G1398' => 'cansat', 'CANSAT56G2456' => 'cansat', 'CANSAT56G3031' => 'cansat', 'CANSAT56G4539' => 'cansat', 'CARHR083680' => 'chi', 'CARHR171190' => 'chi', 'CARHR209010' => 'chi', 'CARHR229680' => 'chi', 'CARHR249490' => 'chi', 'Carub.0003s0844' => 'cru', 'Carub.0005s2755' => 'cru', 'Carub.0006s0322' => 'cru', 'Carub.0006s3586' => 'cru', 'Carub.0007s1855' => 'cru', 'Ca_07808_v3' => 'car', 'Ca_09535_v3' => 'car', 'Ca_10548_v3' => 'car', 'Ca_19913_v3' => 'car', 'Ca_19916_v3' => 'car', 'Ca_19975_v3' => 'car', 'CBR_g22876' => 'cbr', 'CBR_g22879' => 'cbr', 'CBR_g38491' => 'cbr', 'CBR_g54185' => 'cbr', 'CBR_g54190' => 'cbr', 'Cc02_g11020' => 'ccan', 'Cc02_g23920' => 'ccan', 'Cc02_g39860' => 'ccan', 'Cc02_g39870' => 'ccan', 'Cc03_g06760' => 'ccan', 'Cc06_g02450' => 'ccan', 'Cc09_g09450' => 'ccan', 'CDE02G1959' => 'cde', 'CDE04G0600' => 'cde', 'CDE07G1996' => 'cde', 'CDE07G2078' => 'cde', 'CDE11G0611' => 'cde', 'Cfa001683' => 'cfa', 'Cfa001734' => 'cfa', 'Cfa001737' => 'cfa', 'Cfa003751' => 'cfa', 'Cfa012019' => 'cfa', 'Cfa017353' => 'cfa', 'Cfa017732' => 'cfa', 'Cfa022464' => 'cfa', 'Ciclev10012400m.g' => 'ccl', 'Ciclev10021242m.g' => 'ccl', 'Ciclev10021302m.g' => 'ccl', 'Ciclev10021463m.g' => 'ccl', 'Ciclev10032359m.g' => 'ccl', 'CiPaw.01G081000' => 'cil', 'CiPaw.01G262500' => 'cil', 'CiPaw.01G269800' => 'cil', 'CiPaw.02G168400' => 'cil', 'CiPaw.05G119500' => 'cil', 'CiPaw.11G147300' => 'cil', 'ClCG01G003630' => 'cla', 'ClCG05G000510' => 'cla', 'ClCG05G002300' => 'cla', 'ClCG08G007650' => 'cla', 'ClCG10G021250' => 'cla', 'COL.COLO4_06218' => 'col', 'COL.COLO4_12538' => 'col', 'COL.COLO4_14775' => 'col', 'COL.COLO4_23875' => 'col', 'Cpa.g.sc141.16' => 'cpa', 'Cpa.g.sc169.16' => 'cpa', 'Cpa.g.sc244.4' => 'cpa', 'Cpa.g.sc244.5' => 'cpa', 'Cpa.g.sc29.87' => 'cpa', 'Cpa.g.sc53.115' => 'cpa', 'Cre03.g207502' => 'cre', 'Cre06.g277000' => 'cre', 'Cre09.g394050' => 'cre', 'CsaV3_3G007680' => 'csa', 'CsaV3_3G009710' => 'csa', 'CsaV3_3G034790' => 'csa', 'CsaV3_5G003750' => 'csa', 'CsaV3_6G036620' => 'csa', 'CSS0002288' => 'camsi', 'CSS0011250' => 'camsi', 'CSS0021619' => 'camsi', 'CSS0046701' => 'camsi', 'DCAR_006420' => 'dca', 'DCAR_006865' => 'dca', 'DCAR_008558' => 'dca', 'DCAR_028754' => 'dca', 'DCAR_028755' => 'dca', 'Dinv31218' => 'din', 'Dinv32371' => 'din', 'Dinv34250' => 'din', 'Dinv37156' => 'din', 'Dinv43704' => 'din', 'Duzib093G1811' => 'dzi', 'Duzib106G1622' => 'dzi', 'Duzib114G0504' => 'dzi', 'Duzib128G0338' => 'dzi', 'Duzib128G1577' => 'dzi', 'Duzib133G0104' => 'dzi', 'Duzib133G1080' => 'dzi', 'Duzib138G0324' => 'dzi', 'Duzib138G0394' => 'dzi', 'Duzib205G0122' => 'dzi', 'Duzib268G1020' => 'dzi', 'Duzib268G1359' => 'dzi', 'ECA232G3929' => 'eca', 'ECA236G2210' => 'eca', 'ECA236G2287' => 'eca', 'ECA240G4568' => 'eca', 'ECA247G0894' => 'eca', 'EL10Ac1g00200' => 'bvu', 'EL10Ac1g00886' => 'bvu', 'EL10As1g23091' => 'bvu', 'EL10As1g23092' => 'bvu', 'Eucgr.A01284' => 'egr', 'Eucgr.A01285' => 'egr', 'Eucgr.D02456' => 'egr', 'Eucgr.E00018' => 'egr', 'Eucgr.E01439' => 'egr', 'Eucgr.G02859' => 'egr', 'FAN01G0168' => 'fan', 'FAN01G0453' => 'fan', 'FAN01G2761' => 'fan', 'FAN02G1239' => 'fan', 'FAN03G0645' => 'fan', 'FAN03G2707' => 'fan', 'FAN03G2978' => 'fan', 'FAN04G0227' => 'fan', 'FAN06G0091' => 'fan', 'FAN06G1418' => 'fan', 'FAN06G1512' => 'fan', 'FAN06G1986' => 'fan', 'FAN06G2905' => 'fan', 'FAN06G4325' => 'fan', 'FAN08G0033' => 'fan', 'FAN09G0642' => 'fan', 'FAN10G1763' => 'fan', 'FAN10G2026' => 'fan', 'FAN10G2513' => 'fan', 'FAN10G3402' => 'fan', 'FAN10G3564' => 'fan', 'FAN10G3987' => 'fan', 'FAN13G1490' => 'fan', 'FAN14G5857' => 'fan', 'FAN18G1188' => 'fan', 'FvH4_5g00750' => 'fve', 'FvH4_6g13410' => 'fve', 'FvH4_7g11740' => 'fve', 'FvH4_7g17410' => 'fve', 'FvH4_7g18860' => 'fve', 'Glyma.01G099100' => 'gma', 'Glyma.01G142300' => 'gma', 'Glyma.03G025500' => 'gma', 'Glyma.03G069700' => 'gma', 'Glyma.03G260000' => 'gma', 'Glyma.09G269800' => 'gma', 'Glyma.10G208700' => 'gma', 'Glyma.18G220400' => 'gma', 'Glyma.20G182000' => 'gma', 'Gohir.A01G221726' => 'ghi', 'Gohir.A07G134600' => 'ghi', 'Gohir.A07G146000' => 'ghi', 'Gohir.A08G173900' => 'ghi', 'Gohir.A09G194900' => 'ghi', 'Gohir.A10G204100' => 'ghi', 'Gohir.A11G080600' => 'ghi', 'Gohir.A11G327500' => 'ghi', 'Gohir.A12G101800' => 'ghi', 'Gohir.D01G211200' => 'ghi', 'Gohir.D07G139200' => 'ghi', 'Gohir.D07G152100' => 'ghi', 'Gohir.D08G192600' => 'ghi', 'Gohir.D09G189200' => 'ghi', 'Gohir.D10G212000' => 'ghi', 'Gohir.D11G085200' => 'ghi', 'Gohir.D11G346400' => 'ghi', 'Gohir.D12G104800' => 'ghi', 'Gorai.001G151300' => 'gra', 'Gorai.001G174100' => 'gra', 'Gorai.002G257000' => 'gra', 'Gorai.004G202600' => 'gra', 'Gorai.007G090900' => 'gra', 'Gorai.007G376700' => 'gra', 'Gorai.008G114100' => 'gra', 'Gorai.011G237900' => 'gra', 'GSVIVG01005450001' => 'vvi', 'GSVIVG01016232001' => 'vvi', 'GSVIVG01026157001' => 'vvi', 'GSVIVG01027419001' => 'vvi', 'GSVIVG01027631001' => 'vvi', 'GSVIVG01034143001' => 'vvi', 'HanXRQChr03g0093921' => 'han', 'HanXRQChr04g0120001' => 'han', 'HanXRQChr04g0122561' => 'han', 'HanXRQChr09g0246851' => 'han', 'HanXRQChr10g0293311' => 'han', 'HanXRQChr13g0425231' => 'han', 'HanXRQChr16g0532571' => 'han', 'Haze_09050' => 'cav', 'Haze_15715' => 'cav', 'Haze_15716' => 'cav', 'Haze_16803' => 'cav', 'Haze_16850' => 'cav', 'Hma1.2p1_0301F.1_g118655' => 'hma', 'Hma1.2p1_0309F.1_g120590' => 'hma', 'Hma1.2p1_0936F.1_g238900' => 'hma', 'Hma1.2p1_3552F.1_g336740' => 'hma', 'HPP92_003520' => 'vpl', 'HPP92_006628' => 'vpl', 'HPP92_006645' => 'vpl', 'HPP92_014669' => 'vpl', 'HPP92_015077' => 'vpl', 'Hund16742' => 'sun', 'Hund17022' => 'sun', 'Lalb_Chr02g0152131' => 'lal', 'Lalb_Chr05g0225371' => 'lal', 'Lalb_Chr07g0189841' => 'lal', 'Lalb_Chr07g0192961' => 'lal', 'Lalb_Chr12g0208221' => 'lal', 'Lalb_Chr13g0291211' => 'lal', 'Lalb_Chr13g0291781' => 'lal', 'Lalb_Chr18g0044651' => 'lal', 'Lalb_Chr21g0313731' => 'lal', 'Lj1g0022533' => 'lja', 'Lj2A18T50' => 'lonja', 'Lj2A92G93' => 'lonja', 'Lj3A965T73' => 'lonja', 'Lj3g0000673' => 'lja', 'Lj3g0002666' => 'lja', 'Lj4g0016985' => 'lja', 'Lj5g0003625' => 'lja', 'Lj7A529G36' => 'lonja', 'Lj9A569T49' => 'lonja', 'Lj9A604T63' => 'lonja', 'Lsat_1_v5_gn_3_132060' => 'lsa', 'Lsat_1_v5_gn_4_68941' => 'lsa', 'Lsat_1_v5_gn_5_95580' => 'lsa', 'Lsat_1_v5_gn_7_161' => 'lsa', 'Lsat_1_v5_gn_7_7041' => 'lsa', 'Lsat_1_v5_gn_9_33481' => 'lsa', 'Lsat_1_v5_gn_9_68260' => 'lsa', 'Manes.01G073100' => 'mes', 'Manes.01G266300' => 'mes', 'Manes.02G033300' => 'mes', 'Manes.05G017900' => 'mes', 'Manes.05G046100' => 'mes', 'Manes.08G080900' => 'mes', 'Manes.10G049400' => 'mes', 'Mapoly0009s0186' => 'mpo', 'Mapoly0036s0118' => 'mpo', 'Mapoly0101s0046' => 'mpo', 'MBI04_g30218_MAGBIO' => 'mbi', 'MBI04_g35564_MAGBIO' => 'mbi', 'MBI12_g34011_MAGBIO' => 'mbi', 'MBI14_g04655_MAGBIO' => 'mbi', 'MCO07G653' => 'mco', 'MCO10G173' => 'mco', 'MD01G1087100' => 'mdo', 'MD01G1104200' => 'mdo', 'MD02G1205100' => 'mdo', 'MD04G1079200' => 'mdo', 'MD04G1131400' => 'mdo', 'MD07G1121600' => 'mdo', 'MD07G1157300' => 'mdo', 'MD07G1171000' => 'mdo', 'MD12G1144500' => 'mdo', 'Medtr1g094610' => 'mtr', 'Medtr4g021795' => 'mtr', 'Medtr4g023760' => 'mtr', 'Medtr7g118050' => 'mtr', 'MELO3C005582.2' => 'cme', 'MELO3C005989.2' => 'cme', 'MELO3C006192.2' => 'cme', 'MELO3C009248.2' => 'cme', 'MELO3C019817.2' => 'cme', 'Migut.B01625' => 'egut', 'Migut.B01915' => 'egut', 'Migut.F01721' => 'egut', 'Migut.J00314' => 'egut', 'MSTRG.20742' => 'ama', 'MSTRG.8134' => 'ama', 'Nitab4.5_0000096g0010' => 'nta', 'Nitab4.5_0000202g0030' => 'nta', 'Nitab4.5_0000216g0370' => 'nta', 'Nitab4.5_0000457g0230' => 'nta', 'Nitab4.5_0001702g0170' => 'nta', 'Nitab4.5_0003607g0010' => 'nta', 'Nitab4.5_0004917g0020' => 'nta', 'Nitab4.5_0007059g0010' => 'nta', 'Nitab4.5_0007184g0010' => 'nta', 'Nitab4.5_0007346g0020' => 'nta', 'Nn1g00410' => 'nnu', 'Nn1g01252' => 'nnu', 'Nn2g11168' => 'nnu', 'Nn2g13403' => 'nnu', 'Nn2g13760' => 'nnu', 'Nn4g26380' => 'nnu', 'Oeu000806.2' => 'oeu', 'Oeu005788.1' => 'oeu', 'Oeu006900.3' => 'oeu', 'Oeu007797.1' => 'oeu', 'Oeu011932.1' => 'oeu', 'Oeu022739.1' => 'oeu', 'Oeu037918.1' => 'oeu', 'Oeu055490.2' => 'oeu', 'Os01g0844400' => 'osa', 'Os02g0819100' => 'osa', 'Os03g0804300' => 'osa', 'Os05g0458000' => 'osa', 'Os07g0467800' => 'osa', 'Os12g0602200' => 'osa', 'Peaxi162Scf00013g03444' => 'pax', 'Peaxi162Scf00094g01120' => 'pax', 'Peaxi162Scf00191g01211' => 'pax', 'Peaxi162Scf00238g01110' => 'pax', 'Peaxi162Scf00330g00719' => 'pax', 'Peaxi162Scf00627g00018' => 'pax', 'PGR031G2686' => 'pgr', 'PGR042G0809' => 'pgr', 'PGR142G0193' => 'pgr', 'PGSC0003DMG400011066' => 'stu', 'PGSC0003DMG400012041' => 'stu', 'PGSC0003DMG400013678' => 'stu', 'PGSC0003DMG400023477' => 'stu', 'PGSC0003DMG400025956' => 'stu', 'PGSC0003DMG401019151' => 'stu', 'Phvul.006G116400' => 'pvu', 'Phvul.007G097300' => 'pvu', 'Phvul.010G015000' => 'pvu', 'Phvul.010G083900' => 'pvu', 'Potri.001G117100' => 'ptr', 'Potri.002G147300' => 'ptr', 'Potri.003G115600' => 'ptr', 'Potri.006G087400' => 'ptr', 'Potri.010G226100' => 'ptr', 'Potri.014G069200' => 'ptr', 'Potri.014G104000' => 'ptr', 'Potri.016G100200' => 'ptr', 'Pp3c10_20450' => 'ppa', 'Pp3c1_42400' => 'ppa', 'Pp3c3_24390' => 'ppa', 'Pp3c3_2860' => 'ppa', 'PRCOL_00003193' => 'pco', 'Prupe.2G144500' => 'ppe', 'Prupe.2G195700' => 'ppe', 'Prupe.2G209800' => 'ppe', 'Prupe.5G080000' => 'ppe', 'Prupe.6G257900' => 'ppe', 'Psat3g001160' => 'psa', 'Psat6g181880' => 'psa', 'Psat7g233720' => 'psa', 'PSO063G7587' => 'pso', 'PSO339G2145' => 'pso', 'PSO339G3369' => 'pso', 'PSO478G2747' => 'pso', 'PSO513G0140' => 'pso', 'PSO782G1614' => 'pso', 'PSO782G4889' => 'pso', 'PSO782G5485' => 'pso', 'PSO801G0241' => 'pso', 'QL07p048854' => 'qlo', 'QL08p046745' => 'qlo', 'QL08p052606' => 'qlo', 'QL08p053414' => 'qlo', 'QL08p054868' => 'qlo', 'RcHm_v2.0_Chr1g0350251' => 'rch', 'RcHm_v2.0_Chr1g0360851' => 'rch', 'RcHm_v2.0_Chr1g0362791' => 'rch', 'RcHm_v2.0_Chr3g0466281' => 'rch', 'RcHm_v2.0_Chr7g0201481' => 'rch', 'Rhsim01G0148600' => 'rsi', 'Rhsim05G0194400' => 'rsi', 'Rhsim07G0000700' => 'rsi', 'Rhsim07G0000800' => 'rsi', 'Rhsim07G0027900' => 'rsi', 'Rhsim09G0149500' => 'rsi', 'RhsimUnG0186900' => 'rsi', 'Sabra01G0089900' => 'sbr', 'Sabra02G0114700' => 'sbr', 'Sabra02G0116300' => 'sbr', 'Sabra03G0080100' => 'sbr', 'Sabra08G0024300' => 'sbr', 'Sabra10G0174300' => 'sbr', 'Sabra14G0048900' => 'sbr', 'Sabra14G0076500' => 'sbr', 'SalBow5G2513' => 'sbo', 'Sc01g0002300' => 'sci', 'Sc01g0004450' => 'sci', 'Sc06g0001680' => 'sci', 'Sc23g0003580' => 'sci', 'Sed0000913' => 'sed', 'Sed0001655' => 'sed', 'Sed0007745' => 'sed', 'Sed0010951' => 'sed', 'Sed0017599' => 'sed', 'Sed0021405' => 'sed', 'Sed0022810' => 'sed', 'SEGI_07099' => 'sgi', 'SEGI_11931' => 'sgi', 'SEGI_13187' => 'sgi', 'SEGI_29958' => 'sgi', 'SEGI_36351' => 'sgi', 'SGA_v2.0_scaffold126G33770' => 'sas', 'SGA_v2.0_scaffold153G37003' => 'sas', 'SGA_v2.0_scaffold2G01359' => 'sas', 'SGA_v2.0_scaffold5G03064' => 'sas', 'SGA_v2.0_scaffold95G28903' => 'sas', 'SHI12701' => 'shi', 'SHI26410' => 'shi', 'SHI38997' => 'shi', 'SHI53759' => 'shi', 'SHI53886' => 'shi', 'SHI54714' => 'shi', 'SMO011G0041' => 'smo', 'SMO146G0251' => 'smo', 'SMO160G0004' => 'smo', 'SMO174G0057' => 'smo', 'SMO244G0089' => 'smo', 'SMO296G0011' => 'smo', 'Solyc01g091280.3' => 'sly', 'Solyc05g047610.3' => 'sly', 'Solyc05g047640.3' => 'sly', 'Solyc05g055630.3' => 'sly', 'Solyc10g018160.2' => 'sly', 'Solyc10g084820.2' => 'sly', 'Solyc10g086565.2' => 'sly', 'Sopen01g037030' => 'spe', 'Sopen05g027920' => 'spe', 'Sopen05g034070' => 'spe', 'Sopen10g007260' => 'spe', 'Sopen10g034260' => 'spe', 'Sopen10g035950' => 'spe', 'Sp3g07710' => 'spa', 'Sp4g27420' => 'spa', 'Sp5g02450' => 'spa', 'Sp6g01280' => 'spa', 'Sp6g38480' => 'spa', 'Sp7g20780' => 'spa', 'TAR374G1413' => 'tar', 'TAR623G1777' => 'tar', 'TAR629G2370' => 'tar', 'TAR633G1759' => 'tar', 'TAR636G3387' => 'tar', 'THA.LOC104802447' => 'tha', 'THA.LOC104813916' => 'tha', 'THA.LOC104816423' => 'tha', 'THA.LOC104817246' => 'tha', 'THA.LOC104825895' => 'tha', 'Thecc.01G335200' => 'tca', 'Thecc.01G377400' => 'tca', 'Thecc.03G262200' => 'tca', 'Thecc.05G036800' => 'tca', 'Thecc.10G080500' => 'tca', 'Thecc.10G080800' => 'tca', 'Thhalv10001560m.g' => 'esa', 'Thhalv10006120m.g' => 'esa', 'Thhalv10014375m.g' => 'esa', 'Thhalv10021264m.g' => 'esa', 'Thhalv10028856m.g' => 'esa', 'TPR.G1914' => 'tpr', 'TPR.G4757' => 'tpr', 'TPR.G5595' => 'tpr', 'TWI14G0952' => 'twi', 'TWI14G1307' => 'twi', 'TWI38G2143' => 'twi', 'TWI59G0826' => 'twi', 'TWI77G0527' => 'twi', 'TWI81G0150' => 'twi', 'unitig_21.g21018' => 'ugi', 'unitig_26.g9725' => 'ugi', 'unitig_744.g24653' => 'ugi', 'unitig_749.g13778' => 'ugi', 'unitig_899.g15035' => 'ugi', 'vmacro04296' => 'vma', 'vmacro04852' => 'vma', 'vmacro13404' => 'vma', 'vmacro20169' => 'vma', 'vmacro21014' => 'vma', 'VMungo0331G0237' => 'vmu', 'VMungo0331G0706' => 'vmu', 'VMungo0331G1361' => 'vmu', 'VMungo0331G1489' => 'vmu', 'VMungo0540G1037' => 'vmu', 'VMungo0720G2487' => 'vmu', 'VMungo0720G2721' => 'vmu', 'Zm00001eb086860' => 'zma', 'Zm00001eb104760' => 'zma', 'Zm00001eb148220' => 'zma', 'Zm00001eb259030' => 'zma', 'Zm00001eb289590' => 'zma', 'Zm00001eb420150' => 'zma' ), 'gf_id' => 'HOM05D000968', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000968' ), 'data_identifier' => 'HOM05D000968', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000968', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p31690' => 'bna', 'A03p36040' => 'bna', 'A03p53730' => 'bna', 'A04p01410' => 'bna', 'A05p05420' => 'bna', 'A05p39630' => 'bna', 'A05p39640' => 'bna', 'A09p00970' => 'bna', 'A09p53060' => 'bna', 'A10p31890' => 'bna', 'Aa31LG10G15040' => 'aar', 'Aa31LG1G21090' => 'aar', 'Aa31LG1G26900' => 'aar', 'Aa31LG3G1820' => 'aar', 'Aa31LG5G1100' => 'aar', 'Aa31LG6G4740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2265' => 'aag', 'Actinidia07998' => 'ach', 'Actinidia11266' => 'ach', 'Actinidia12682' => 'ach', 'Actinidia26479' => 'ach', 'Actinidia31406' => 'ach', 'Actinidia32437' => 'ach', 'Actinidia38862' => 'ach', 'Ah.05g174230' => 'amhyb', 'Ah.05g179070' => 'amhyb', 'Ah.05g179090' => 'amhyb', 'Ah.12g059950' => 'amhyb', 'AL3G20480' => 'aly', 'AL4G44520' => 'aly', 'AL5G43110' => 'aly', 'AL6G13890' => 'aly', 'AL6G52620' => 'aly', 'AL7G30830' => 'aly', 'Aqoxy1G00899' => 'aox', 'Aqoxy5G04333' => 'aox', 'Aqoxy7G00641' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3IZ0NN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4EF6AW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W9P8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79GA3M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C43NQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFCU6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G95YVJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCHK29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LU1UG8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX91RN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGB4B1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8DA0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9H7JI' => 'arhy', 'AT3G09320' => 'ath', 'AT3G60800' => 'ath', 'AT4G00840' => 'ath', 'AT4G22750' => 'ath', 'AT5G04270' => 'ath', 'ATR0090G003' => 'atr', 'ATR0559G349' => 'atr', 'ATR0680G261' => 'atr', 'ATR0810G048' => 'atr', 'Atru.chr12.831' => 'acertr', 'Atru.chr5.303' => 'acertr', 'Atru.chr5.748' => 'acertr', 'Atru.chr8.1999' => 'acertr', 'Atru.chr9.1436' => 'acertr', 'AUR62004211' => 'cqu', 'AUR62004548' => 'cqu', 'AUR62013637' => 'cqu', 'AUR62022662' => 'cqu', 'AUR62025777' => 'cqu', 'AUR62042386' => 'cqu', 'BcaB01g02310' => 'bca', 'BcaB01g06062' => 'bca', 'BcaB02g08975' => 'bca', 'BcaB02g08980' => 'bca', 'BcaC01g04228' => 'bca', 'BcaC01g06830' => 'bca', 'BcaC02g10186' => 'bca', 'BcaC02g12214' => 'bca', 'BcaC04g24101' => 'bca', 'BcaC05g29520' => 'bca', 'BcaC05g29661' => 'bca', 'BcaC06g32130' => 'bca', 'BcaC06g32131' => 'bca', 'BcaC07g40601' => 'bca', 'BcaC07g42641' => 'bca', 'BcaNung01038' => 'bca', 'BcaNung01676' => 'bca', 'BcaNung02480' => 'bca', 'BcaNung07376' => 'bca', 'BolC3t16146H' => 'bol', 'BolC3t16637H' => 'bol', 'BolC4t22257H' => 'bol', 'BolC4t24728H' => 'bol', 'BolC5t34517H' => 'bol', 'BolC7t45703H' => 'bol', 'BolC8t51166H' => 'bol', 'BolC9t53038H' => 'bol', 'BolC9t60000H' => 'bol', 'BraA01t01345Z' => 'bra', 'BraA01t01346Z' => 'bra', 'BraA01t01348Z' => 'bra', 'BraA03t12347Z' => 'bra', 'BraA03t12775Z' => 'bra', 'BraA03t14439Z' => 'bra', 'BraA04t15860Z' => 'bra', 'BraA05t19511Z' => 'bra', 'BraA05t22746Z' => 'bra', 'BraA09t35767Z' => 'bra', 'BraA09t40732Z' => 'bra', 'BraA10t45233Z' => 'bra', 'C03p38720' => 'bna', 'C03p43680' => 'bna', 'C04p06350' => 'bna', 'C04p31800' => 'bna', 'C05p58680' => 'bna', 'C07p52110' => 'bna', 'C08p35760' => 'bna', 'C09p01050' => 'bna', 'C09p72600' => 'bna', 'CAN.G106.2' => 'can', 'CAN.G1482.1' => 'can', 'CAN.G324.12' => 'can', 'CAN.G388.20' => 'can', 'CAN.G412.7' => 'can', 'CAN.G694.32' => 'can', 'CAN.G92.12' => 'can', 'CANSAT11G2353' => 'cansat', 'CANSAT21G1398' => 'cansat', 'CANSAT56G2456' => 'cansat', 'CANSAT56G3031' => 'cansat', 'CANSAT56G4539' => 'cansat', 'CARHR083680' => 'chi', 'CARHR171190' => 'chi', 'CARHR209010' => 'chi', 'CARHR229680' => 'chi', 'CARHR249490' => 'chi', 'Carub.0003s0844' => 'cru', 'Carub.0005s2755' => 'cru', 'Carub.0006s0322' => 'cru', 'Carub.0006s3586' => 'cru', 'Carub.0007s1855' => 'cru', 'Ca_07808_v3' => 'car', 'Ca_09535_v3' => 'car', 'Ca_10548_v3' => 'car', 'Ca_19913_v3' => 'car', 'Ca_19916_v3' => 'car', 'Ca_19975_v3' => 'car', 'CBR_g22876' => 'cbr', 'CBR_g22879' => 'cbr', 'CBR_g38491' => 'cbr', 'CBR_g54185' => 'cbr', 'CBR_g54190' => 'cbr', 'Cc02_g11020' => 'ccan', 'Cc02_g23920' => 'ccan', 'Cc02_g39860' => 'ccan', 'Cc02_g39870' => 'ccan', 'Cc03_g06760' => 'ccan', 'Cc06_g02450' => 'ccan', 'Cc09_g09450' => 'ccan', 'CDE02G1959' => 'cde', 'CDE04G0600' => 'cde', 'CDE07G1996' => 'cde', 'CDE07G2078' => 'cde', 'CDE11G0611' => 'cde', 'Cfa001683' => 'cfa', 'Cfa001734' => 'cfa', 'Cfa001737' => 'cfa', 'Cfa003751' => 'cfa', 'Cfa012019' => 'cfa', 'Cfa017353' => 'cfa', 'Cfa017732' => 'cfa', 'Cfa022464' => 'cfa', 'Ciclev10012400m.g' => 'ccl', 'Ciclev10021242m.g' => 'ccl', 'Ciclev10021302m.g' => 'ccl', 'Ciclev10021463m.g' => 'ccl', 'Ciclev10032359m.g' => 'ccl', 'CiPaw.01G081000' => 'cil', 'CiPaw.01G262500' => 'cil', 'CiPaw.01G269800' => 'cil', 'CiPaw.02G168400' => 'cil', 'CiPaw.05G119500' => 'cil', 'CiPaw.11G147300' => 'cil', 'ClCG01G003630' => 'cla', 'ClCG05G000510' => 'cla', 'ClCG05G002300' => 'cla', 'ClCG08G007650' => 'cla', 'ClCG10G021250' => 'cla', 'COL.COLO4_06218' => 'col', 'COL.COLO4_12538' => 'col', 'COL.COLO4_14775' => 'col', 'COL.COLO4_23875' => 'col', 'Cpa.g.sc141.16' => 'cpa', 'Cpa.g.sc169.16' => 'cpa', 'Cpa.g.sc244.4' => 'cpa', 'Cpa.g.sc244.5' => 'cpa', 'Cpa.g.sc29.87' => 'cpa', 'Cpa.g.sc53.115' => 'cpa', 'Cre03.g207502' => 'cre', 'Cre06.g277000' => 'cre', 'Cre09.g394050' => 'cre', 'CsaV3_3G007680' => 'csa', 'CsaV3_3G009710' => 'csa', 'CsaV3_3G034790' => 'csa', 'CsaV3_5G003750' => 'csa', 'CsaV3_6G036620' => 'csa', 'CSS0002288' => 'camsi', 'CSS0011250' => 'camsi', 'CSS0021619' => 'camsi', 'CSS0046701' => 'camsi', 'DCAR_006420' => 'dca', 'DCAR_006865' => 'dca', 'DCAR_008558' => 'dca', 'DCAR_028754' => 'dca', 'DCAR_028755' => 'dca', 'Dinv31218' => 'din', 'Dinv32371' => 'din', 'Dinv34250' => 'din', 'Dinv37156' => 'din', 'Dinv43704' => 'din', 'Duzib093G1811' => 'dzi', 'Duzib106G1622' => 'dzi', 'Duzib114G0504' => 'dzi', 'Duzib128G0338' => 'dzi', 'Duzib128G1577' => 'dzi', 'Duzib133G0104' => 'dzi', 'Duzib133G1080' => 'dzi', 'Duzib138G0324' => 'dzi', 'Duzib138G0394' => 'dzi', 'Duzib205G0122' => 'dzi', 'Duzib268G1020' => 'dzi', 'Duzib268G1359' => 'dzi', 'ECA232G3929' => 'eca', 'ECA236G2210' => 'eca', 'ECA236G2287' => 'eca', 'ECA240G4568' => 'eca', 'ECA247G0894' => 'eca', 'EL10Ac1g00200' => 'bvu', 'EL10Ac1g00886' => 'bvu', 'EL10As1g23091' => 'bvu', 'EL10As1g23092' => 'bvu', 'Eucgr.A01284' => 'egr', 'Eucgr.A01285' => 'egr', 'Eucgr.D02456' => 'egr', 'Eucgr.E00018' => 'egr', 'Eucgr.E01439' => 'egr', 'Eucgr.G02859' => 'egr', 'FAN01G0168' => 'fan', 'FAN01G0453' => 'fan', 'FAN01G2761' => 'fan', 'FAN02G1239' => 'fan', 'FAN03G0645' => 'fan', 'FAN03G2707' => 'fan', 'FAN03G2978' => 'fan', 'FAN04G0227' => 'fan', 'FAN06G0091' => 'fan', 'FAN06G1418' => 'fan', 'FAN06G1512' => 'fan', 'FAN06G1986' => 'fan', 'FAN06G2905' => 'fan', 'FAN06G4325' => 'fan', 'FAN08G0033' => 'fan', 'FAN09G0642' => 'fan', 'FAN10G1763' => 'fan', 'FAN10G2026' => 'fan', 'FAN10G2513' => 'fan', 'FAN10G3402' => 'fan', 'FAN10G3564' => 'fan', 'FAN10G3987' => 'fan', 'FAN13G1490' => 'fan', 'FAN14G5857' => 'fan', 'FAN18G1188' => 'fan', 'FvH4_5g00750' => 'fve', 'FvH4_6g13410' => 'fve', 'FvH4_7g11740' => 'fve', 'FvH4_7g17410' => 'fve', 'FvH4_7g18860' => 'fve', 'Glyma.01G099100' => 'gma', 'Glyma.01G142300' => 'gma', 'Glyma.03G025500' => 'gma', 'Glyma.03G069700' => 'gma', 'Glyma.03G260000' => 'gma', 'Glyma.09G269800' => 'gma', 'Glyma.10G208700' => 'gma', 'Glyma.18G220400' => 'gma', 'Glyma.20G182000' => 'gma', 'Gohir.A01G221726' => 'ghi', 'Gohir.A07G134600' => 'ghi', 'Gohir.A07G146000' => 'ghi', 'Gohir.A08G173900' => 'ghi', 'Gohir.A09G194900' => 'ghi', 'Gohir.A10G204100' => 'ghi', 'Gohir.A11G080600' => 'ghi', 'Gohir.A11G327500' => 'ghi', 'Gohir.A12G101800' => 'ghi', 'Gohir.D01G211200' => 'ghi', 'Gohir.D07G139200' => 'ghi', 'Gohir.D07G152100' => 'ghi', 'Gohir.D08G192600' => 'ghi', 'Gohir.D09G189200' => 'ghi', 'Gohir.D10G212000' => 'ghi', 'Gohir.D11G085200' => 'ghi', 'Gohir.D11G346400' => 'ghi', 'Gohir.D12G104800' => 'ghi', 'Gorai.001G151300' => 'gra', 'Gorai.001G174100' => 'gra', 'Gorai.002G257000' => 'gra', 'Gorai.004G202600' => 'gra', 'Gorai.007G090900' => 'gra', 'Gorai.007G376700' => 'gra', 'Gorai.008G114100' => 'gra', 'Gorai.011G237900' => 'gra', 'GSVIVG01005450001' => 'vvi', 'GSVIVG01016232001' => 'vvi', 'GSVIVG01026157001' => 'vvi', 'GSVIVG01027419001' => 'vvi', 'GSVIVG01027631001' => 'vvi', 'GSVIVG01034143001' => 'vvi', 'HanXRQChr03g0093921' => 'han', 'HanXRQChr04g0120001' => 'han', 'HanXRQChr04g0122561' => 'han', 'HanXRQChr09g0246851' => 'han', 'HanXRQChr10g0293311' => 'han', 'HanXRQChr13g0425231' => 'han', 'HanXRQChr16g0532571' => 'han', 'Haze_09050' => 'cav', 'Haze_15715' => 'cav', 'Haze_15716' => 'cav', 'Haze_16803' => 'cav', 'Haze_16850' => 'cav', 'Hma1.2p1_0301F.1_g118655' => 'hma', 'Hma1.2p1_0309F.1_g120590' => 'hma', 'Hma1.2p1_0936F.1_g238900' => 'hma', 'Hma1.2p1_3552F.1_g336740' => 'hma', 'HPP92_003520' => 'vpl', 'HPP92_006628' => 'vpl', 'HPP92_006645' => 'vpl', 'HPP92_014669' => 'vpl', 'HPP92_015077' => 'vpl', 'Hund16742' => 'sun', 'Hund17022' => 'sun', 'Lalb_Chr02g0152131' => 'lal', 'Lalb_Chr05g0225371' => 'lal', 'Lalb_Chr07g0189841' => 'lal', 'Lalb_Chr07g0192961' => 'lal', 'Lalb_Chr12g0208221' => 'lal', 'Lalb_Chr13g0291211' => 'lal', 'Lalb_Chr13g0291781' => 'lal', 'Lalb_Chr18g0044651' => 'lal', 'Lalb_Chr21g0313731' => 'lal', 'Lj1g0022533' => 'lja', 'Lj2A18T50' => 'lonja', 'Lj2A92G93' => 'lonja', 'Lj3A965T73' => 'lonja', 'Lj3g0000673' => 'lja', 'Lj3g0002666' => 'lja', 'Lj4g0016985' => 'lja', 'Lj5g0003625' => 'lja', 'Lj7A529G36' => 'lonja', 'Lj9A569T49' => 'lonja', 'Lj9A604T63' => 'lonja', 'Lsat_1_v5_gn_3_132060' => 'lsa', 'Lsat_1_v5_gn_4_68941' => 'lsa', 'Lsat_1_v5_gn_5_95580' => 'lsa', 'Lsat_1_v5_gn_7_161' => 'lsa', 'Lsat_1_v5_gn_7_7041' => 'lsa', 'Lsat_1_v5_gn_9_33481' => 'lsa', 'Lsat_1_v5_gn_9_68260' => 'lsa', 'Manes.01G073100' => 'mes', 'Manes.01G266300' => 'mes', 'Manes.02G033300' => 'mes', 'Manes.05G017900' => 'mes', 'Manes.05G046100' => 'mes', 'Manes.08G080900' => 'mes', 'Manes.10G049400' => 'mes', 'Mapoly0009s0186' => 'mpo', 'Mapoly0036s0118' => 'mpo', 'Mapoly0101s0046' => 'mpo', 'MBI04_g30218_MAGBIO' => 'mbi', 'MBI04_g35564_MAGBIO' => 'mbi', 'MBI12_g34011_MAGBIO' => 'mbi', 'MBI14_g04655_MAGBIO' => 'mbi', 'MCO07G653' => 'mco', 'MCO10G173' => 'mco', 'MD01G1087100' => 'mdo', 'MD01G1104200' => 'mdo', 'MD02G1205100' => 'mdo', 'MD04G1079200' => 'mdo', 'MD04G1131400' => 'mdo', 'MD07G1121600' => 'mdo', 'MD07G1157300' => 'mdo', 'MD07G1171000' => 'mdo', 'MD12G1144500' => 'mdo', 'Medtr1g094610' => 'mtr', 'Medtr4g021795' => 'mtr', 'Medtr4g023760' => 'mtr', 'Medtr7g118050' => 'mtr', 'MELO3C005582.2' => 'cme', 'MELO3C005989.2' => 'cme', 'MELO3C006192.2' => 'cme', 'MELO3C009248.2' => 'cme', 'MELO3C019817.2' => 'cme', 'Migut.B01625' => 'egut', 'Migut.B01915' => 'egut', 'Migut.F01721' => 'egut', 'Migut.J00314' => 'egut', 'MSTRG.20742' => 'ama', 'MSTRG.8134' => 'ama', 'Nitab4.5_0000096g0010' => 'nta', 'Nitab4.5_0000202g0030' => 'nta', 'Nitab4.5_0000216g0370' => 'nta', 'Nitab4.5_0000457g0230' => 'nta', 'Nitab4.5_0001702g0170' => 'nta', 'Nitab4.5_0003607g0010' => 'nta', 'Nitab4.5_0004917g0020' => 'nta', 'Nitab4.5_0007059g0010' => 'nta', 'Nitab4.5_0007184g0010' => 'nta', 'Nitab4.5_0007346g0020' => 'nta', 'Nn1g00410' => 'nnu', 'Nn1g01252' => 'nnu', 'Nn2g11168' => 'nnu', 'Nn2g13403' => 'nnu', 'Nn2g13760' => 'nnu', 'Nn4g26380' => 'nnu', 'Oeu000806.2' => 'oeu', 'Oeu005788.1' => 'oeu', 'Oeu006900.3' => 'oeu', 'Oeu007797.1' => 'oeu', 'Oeu011932.1' => 'oeu', 'Oeu022739.1' => 'oeu', 'Oeu037918.1' => 'oeu', 'Oeu055490.2' => 'oeu', 'Os01g0844400' => 'osa', 'Os02g0819100' => 'osa', 'Os03g0804300' => 'osa', 'Os05g0458000' => 'osa', 'Os07g0467800' => 'osa', 'Os12g0602200' => 'osa', 'Peaxi162Scf00013g03444' => 'pax', 'Peaxi162Scf00094g01120' => 'pax', 'Peaxi162Scf00191g01211' => 'pax', 'Peaxi162Scf00238g01110' => 'pax', 'Peaxi162Scf00330g00719' => 'pax', 'Peaxi162Scf00627g00018' => 'pax', 'PGR031G2686' => 'pgr', 'PGR042G0809' => 'pgr', 'PGR142G0193' => 'pgr', 'PGSC0003DMG400011066' => 'stu', 'PGSC0003DMG400012041' => 'stu', 'PGSC0003DMG400013678' => 'stu', 'PGSC0003DMG400023477' => 'stu', 'PGSC0003DMG400025956' => 'stu', 'PGSC0003DMG401019151' => 'stu', 'Phvul.006G116400' => 'pvu', 'Phvul.007G097300' => 'pvu', 'Phvul.010G015000' => 'pvu', 'Phvul.010G083900' => 'pvu', 'Potri.001G117100' => 'ptr', 'Potri.002G147300' => 'ptr', 'Potri.003G115600' => 'ptr', 'Potri.006G087400' => 'ptr', 'Potri.010G226100' => 'ptr', 'Potri.014G069200' => 'ptr', 'Potri.014G104000' => 'ptr', 'Potri.016G100200' => 'ptr', 'Pp3c10_20450' => 'ppa', 'Pp3c1_42400' => 'ppa', 'Pp3c3_24390' => 'ppa', 'Pp3c3_2860' => 'ppa', 'PRCOL_00003193' => 'pco', 'Prupe.2G144500' => 'ppe', 'Prupe.2G195700' => 'ppe', 'Prupe.2G209800' => 'ppe', 'Prupe.5G080000' => 'ppe', 'Prupe.6G257900' => 'ppe', 'Psat3g001160' => 'psa', 'Psat6g181880' => 'psa', 'Psat7g233720' => 'psa', 'PSO063G7587' => 'pso', 'PSO339G2145' => 'pso', 'PSO339G3369' => 'pso', 'PSO478G2747' => 'pso', 'PSO513G0140' => 'pso', 'PSO782G1614' => 'pso', 'PSO782G4889' => 'pso', 'PSO782G5485' => 'pso', 'PSO801G0241' => 'pso', 'QL07p048854' => 'qlo', 'QL08p046745' => 'qlo', 'QL08p052606' => 'qlo', 'QL08p053414' => 'qlo', 'QL08p054868' => 'qlo', 'RcHm_v2.0_Chr1g0350251' => 'rch', 'RcHm_v2.0_Chr1g0360851' => 'rch', 'RcHm_v2.0_Chr1g0362791' => 'rch', 'RcHm_v2.0_Chr3g0466281' => 'rch', 'RcHm_v2.0_Chr7g0201481' => 'rch', 'Rhsim01G0148600' => 'rsi', 'Rhsim05G0194400' => 'rsi', 'Rhsim07G0000700' => 'rsi', 'Rhsim07G0000800' => 'rsi', 'Rhsim07G0027900' => 'rsi', 'Rhsim09G0149500' => 'rsi', 'RhsimUnG0186900' => 'rsi', 'Sabra01G0089900' => 'sbr', 'Sabra02G0114700' => 'sbr', 'Sabra02G0116300' => 'sbr', 'Sabra03G0080100' => 'sbr', 'Sabra08G0024300' => 'sbr', 'Sabra10G0174300' => 'sbr', 'Sabra14G0048900' => 'sbr', 'Sabra14G0076500' => 'sbr', 'SalBow5G2513' => 'sbo', 'Sc01g0002300' => 'sci', 'Sc01g0004450' => 'sci', 'Sc06g0001680' => 'sci', 'Sc23g0003580' => 'sci', 'Sed0000913' => 'sed', 'Sed0001655' => 'sed', 'Sed0007745' => 'sed', 'Sed0010951' => 'sed', 'Sed0017599' => 'sed', 'Sed0021405' => 'sed', 'Sed0022810' => 'sed', 'SEGI_07099' => 'sgi', 'SEGI_11931' => 'sgi', 'SEGI_13187' => 'sgi', 'SEGI_29958' => 'sgi', 'SEGI_36351' => 'sgi', 'SGA_v2.0_scaffold126G33770' => 'sas', 'SGA_v2.0_scaffold153G37003' => 'sas', 'SGA_v2.0_scaffold2G01359' => 'sas', 'SGA_v2.0_scaffold5G03064' => 'sas', 'SGA_v2.0_scaffold95G28903' => 'sas', 'SHI12701' => 'shi', 'SHI26410' => 'shi', 'SHI38997' => 'shi', 'SHI53759' => 'shi', 'SHI53886' => 'shi', 'SHI54714' => 'shi', 'SMO011G0041' => 'smo', 'SMO146G0251' => 'smo', 'SMO160G0004' => 'smo', 'SMO174G0057' => 'smo', 'SMO244G0089' => 'smo', 'SMO296G0011' => 'smo', 'Solyc01g091280.3' => 'sly', 'Solyc05g047610.3' => 'sly', 'Solyc05g047640.3' => 'sly', 'Solyc05g055630.3' => 'sly', 'Solyc10g018160.2' => 'sly', 'Solyc10g084820.2' => 'sly', 'Solyc10g086565.2' => 'sly', 'Sopen01g037030' => 'spe', 'Sopen05g027920' => 'spe', 'Sopen05g034070' => 'spe', 'Sopen10g007260' => 'spe', 'Sopen10g034260' => 'spe', 'Sopen10g035950' => 'spe', 'Sp3g07710' => 'spa', 'Sp4g27420' => 'spa', 'Sp5g02450' => 'spa', 'Sp6g01280' => 'spa', 'Sp6g38480' => 'spa', 'Sp7g20780' => 'spa', 'TAR374G1413' => 'tar', 'TAR623G1777' => 'tar', 'TAR629G2370' => 'tar', 'TAR633G1759' => 'tar', 'TAR636G3387' => 'tar', 'THA.LOC104802447' => 'tha', 'THA.LOC104813916' => 'tha', 'THA.LOC104816423' => 'tha', 'THA.LOC104817246' => 'tha', 'THA.LOC104825895' => 'tha', 'Thecc.01G335200' => 'tca', 'Thecc.01G377400' => 'tca', 'Thecc.03G262200' => 'tca', 'Thecc.05G036800' => 'tca', 'Thecc.10G080500' => 'tca', 'Thecc.10G080800' => 'tca', 'Thhalv10001560m.g' => 'esa', 'Thhalv10006120m.g' => 'esa', 'Thhalv10014375m.g' => 'esa', 'Thhalv10021264m.g' => 'esa', 'Thhalv10028856m.g' => 'esa', 'TPR.G1914' => 'tpr', 'TPR.G4757' => 'tpr', 'TPR.G5595' => 'tpr', 'TWI14G0952' => 'twi', 'TWI14G1307' => 'twi', 'TWI38G2143' => 'twi', 'TWI59G0826' => 'twi', 'TWI77G0527' => 'twi', 'TWI81G0150' => 'twi', 'unitig_21.g21018' => 'ugi', 'unitig_26.g9725' => 'ugi', 'unitig_744.g24653' => 'ugi', 'unitig_749.g13778' => 'ugi', 'unitig_899.g15035' => 'ugi', 'vmacro04296' => 'vma', 'vmacro04852' => 'vma', 'vmacro13404' => 'vma', 'vmacro20169' => 'vma', 'vmacro21014' => 'vma', 'VMungo0331G0237' => 'vmu', 'VMungo0331G0706' => 'vmu', 'VMungo0331G1361' => 'vmu', 'VMungo0331G1489' => 'vmu', 'VMungo0540G1037' => 'vmu', 'VMungo0720G2487' => 'vmu', 'VMungo0720G2721' => 'vmu', 'Zm00001eb086860' => 'zma', 'Zm00001eb104760' => 'zma', 'Zm00001eb148220' => 'zma', 'Zm00001eb259030' => 'zma', 'Zm00001eb289590' => 'zma', 'Zm00001eb420150' => 'zma' ) $gf_id = 'HOM05D000968' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000968' ) $data_identifier = 'HOM05D000968' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 19, 'bol' => (int) 9, 'bra' => (int) 12, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 5, 'ccan' => (int) 7, 'cde' => (int) 5, 'cfa' => (int) 8, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 4, 'dca' => (int) 5, 'din' => (int) 5, 'dzi' => (int) 12, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 25, 'fve' => (int) 5, 'gma' => (int) 9, 'ghi' => (int) 18, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 7, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 5, 'sun' => (int) 2, 'lal' => (int) 9, 'lja' => (int) 5, 'lonja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 9, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 2, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 3, 'stu' => (int) 6, 'pvu' => (int) 4, 'ptr' => (int) 8, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 3, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 1, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 5, 'sas' => (int) 5, 'shi' => (int) 6, 'smo' => (int) 6, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 3, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420150' $species_info = array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ) $local_species = 'ppa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000968', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p31690' => 'bna', 'A03p36040' => 'bna', 'A03p53730' => 'bna', 'A04p01410' => 'bna', 'A05p05420' => 'bna', 'A05p39630' => 'bna', 'A05p39640' => 'bna', 'A09p00970' => 'bna', 'A09p53060' => 'bna', 'A10p31890' => 'bna', 'Aa31LG10G15040' => 'aar', 'Aa31LG1G21090' => 'aar', 'Aa31LG1G26900' => 'aar', 'Aa31LG3G1820' => 'aar', 'Aa31LG5G1100' => 'aar', 'Aa31LG6G4740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2265' => 'aag', 'Actinidia07998' => 'ach', 'Actinidia11266' => 'ach', 'Actinidia12682' => 'ach', 'Actinidia26479' => 'ach', 'Actinidia31406' => 'ach', 'Actinidia32437' => 'ach', 'Actinidia38862' => 'ach', 'Ah.05g174230' => 'amhyb', 'Ah.05g179070' => 'amhyb', 'Ah.05g179090' => 'amhyb', 'Ah.12g059950' => 'amhyb', 'AL3G20480' => 'aly', 'AL4G44520' => 'aly', 'AL5G43110' => 'aly', 'AL6G13890' => 'aly', 'AL6G52620' => 'aly', 'AL7G30830' => 'aly', 'Aqoxy1G00899' => 'aox', 'Aqoxy5G04333' => 'aox', 'Aqoxy7G00641' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3IZ0NN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4EF6AW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W9P8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79GA3M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C43NQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFCU6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G95YVJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCHK29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LU1UG8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX91RN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGB4B1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8DA0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9H7JI' => 'arhy', 'AT3G09320' => 'ath', 'AT3G60800' => 'ath', 'AT4G00840' => 'ath', 'AT4G22750' => 'ath', 'AT5G04270' => 'ath', 'ATR0090G003' => 'atr', 'ATR0559G349' => 'atr', 'ATR0680G261' => 'atr', 'ATR0810G048' => 'atr', 'Atru.chr12.831' => 'acertr', 'Atru.chr5.303' => 'acertr', 'Atru.chr5.748' => 'acertr', 'Atru.chr8.1999' => 'acertr', 'Atru.chr9.1436' => 'acertr', 'AUR62004211' => 'cqu', 'AUR62004548' => 'cqu', 'AUR62013637' => 'cqu', 'AUR62022662' => 'cqu', 'AUR62025777' => 'cqu', 'AUR62042386' => 'cqu', 'BcaB01g02310' => 'bca', 'BcaB01g06062' => 'bca', 'BcaB02g08975' => 'bca', 'BcaB02g08980' => 'bca', 'BcaC01g04228' => 'bca', 'BcaC01g06830' => 'bca', 'BcaC02g10186' => 'bca', 'BcaC02g12214' => 'bca', 'BcaC04g24101' => 'bca', 'BcaC05g29520' => 'bca', 'BcaC05g29661' => 'bca', 'BcaC06g32130' => 'bca', 'BcaC06g32131' => 'bca', 'BcaC07g40601' => 'bca', 'BcaC07g42641' => 'bca', 'BcaNung01038' => 'bca', 'BcaNung01676' => 'bca', 'BcaNung02480' => 'bca', 'BcaNung07376' => 'bca', 'BolC3t16146H' => 'bol', 'BolC3t16637H' => 'bol', 'BolC4t22257H' => 'bol', 'BolC4t24728H' => 'bol', 'BolC5t34517H' => 'bol', 'BolC7t45703H' => 'bol', 'BolC8t51166H' => 'bol', 'BolC9t53038H' => 'bol', 'BolC9t60000H' => 'bol', 'BraA01t01345Z' => 'bra', 'BraA01t01346Z' => 'bra', 'BraA01t01348Z' => 'bra', 'BraA03t12347Z' => 'bra', 'BraA03t12775Z' => 'bra', 'BraA03t14439Z' => 'bra', 'BraA04t15860Z' => 'bra', 'BraA05t19511Z' => 'bra', 'BraA05t22746Z' => 'bra', 'BraA09t35767Z' => 'bra', 'BraA09t40732Z' => 'bra', 'BraA10t45233Z' => 'bra', 'C03p38720' => 'bna', 'C03p43680' => 'bna', 'C04p06350' => 'bna', 'C04p31800' => 'bna', 'C05p58680' => 'bna', 'C07p52110' => 'bna', 'C08p35760' => 'bna', 'C09p01050' => 'bna', 'C09p72600' => 'bna', 'CAN.G106.2' => 'can', 'CAN.G1482.1' => 'can', 'CAN.G324.12' => 'can', 'CAN.G388.20' => 'can', 'CAN.G412.7' => 'can', 'CAN.G694.32' => 'can', 'CAN.G92.12' => 'can', 'CANSAT11G2353' => 'cansat', 'CANSAT21G1398' => 'cansat', 'CANSAT56G2456' => 'cansat', 'CANSAT56G3031' => 'cansat', 'CANSAT56G4539' => 'cansat', 'CARHR083680' => 'chi', 'CARHR171190' => 'chi', 'CARHR209010' => 'chi', 'CARHR229680' => 'chi', 'CARHR249490' => 'chi', 'Carub.0003s0844' => 'cru', 'Carub.0005s2755' => 'cru', 'Carub.0006s0322' => 'cru', 'Carub.0006s3586' => 'cru', 'Carub.0007s1855' => 'cru', 'Ca_07808_v3' => 'car', 'Ca_09535_v3' => 'car', 'Ca_10548_v3' => 'car', 'Ca_19913_v3' => 'car', 'Ca_19916_v3' => 'car', 'Ca_19975_v3' => 'car', 'CBR_g22876' => 'cbr', 'CBR_g22879' => 'cbr', 'CBR_g38491' => 'cbr', 'CBR_g54185' => 'cbr', 'CBR_g54190' => 'cbr', 'Cc02_g11020' => 'ccan', 'Cc02_g23920' => 'ccan', 'Cc02_g39860' => 'ccan', 'Cc02_g39870' => 'ccan', 'Cc03_g06760' => 'ccan', 'Cc06_g02450' => 'ccan', 'Cc09_g09450' => 'ccan', 'CDE02G1959' => 'cde', 'CDE04G0600' => 'cde', 'CDE07G1996' => 'cde', 'CDE07G2078' => 'cde', 'CDE11G0611' => 'cde', 'Cfa001683' => 'cfa', 'Cfa001734' => 'cfa', 'Cfa001737' => 'cfa', 'Cfa003751' => 'cfa', 'Cfa012019' => 'cfa', 'Cfa017353' => 'cfa', 'Cfa017732' => 'cfa', 'Cfa022464' => 'cfa', 'Ciclev10012400m.g' => 'ccl', 'Ciclev10021242m.g' => 'ccl', 'Ciclev10021302m.g' => 'ccl', 'Ciclev10021463m.g' => 'ccl', 'Ciclev10032359m.g' => 'ccl', 'CiPaw.01G081000' => 'cil', 'CiPaw.01G262500' => 'cil', 'CiPaw.01G269800' => 'cil', 'CiPaw.02G168400' => 'cil', 'CiPaw.05G119500' => 'cil', 'CiPaw.11G147300' => 'cil', 'ClCG01G003630' => 'cla', 'ClCG05G000510' => 'cla', 'ClCG05G002300' => 'cla', 'ClCG08G007650' => 'cla', 'ClCG10G021250' => 'cla', 'COL.COLO4_06218' => 'col', 'COL.COLO4_12538' => 'col', 'COL.COLO4_14775' => 'col', 'COL.COLO4_23875' => 'col', 'Cpa.g.sc141.16' => 'cpa', 'Cpa.g.sc169.16' => 'cpa', 'Cpa.g.sc244.4' => 'cpa', 'Cpa.g.sc244.5' => 'cpa', 'Cpa.g.sc29.87' => 'cpa', 'Cpa.g.sc53.115' => 'cpa', 'Cre03.g207502' => 'cre', 'Cre06.g277000' => 'cre', 'Cre09.g394050' => 'cre', 'CsaV3_3G007680' => 'csa', 'CsaV3_3G009710' => 'csa', 'CsaV3_3G034790' => 'csa', 'CsaV3_5G003750' => 'csa', 'CsaV3_6G036620' => 'csa', 'CSS0002288' => 'camsi', 'CSS0011250' => 'camsi', 'CSS0021619' => 'camsi', 'CSS0046701' => 'camsi', 'DCAR_006420' => 'dca', 'DCAR_006865' => 'dca', 'DCAR_008558' => 'dca', 'DCAR_028754' => 'dca', 'DCAR_028755' => 'dca', 'Dinv31218' => 'din', 'Dinv32371' => 'din', 'Dinv34250' => 'din', 'Dinv37156' => 'din', 'Dinv43704' => 'din', 'Duzib093G1811' => 'dzi', 'Duzib106G1622' => 'dzi', 'Duzib114G0504' => 'dzi', 'Duzib128G0338' => 'dzi', 'Duzib128G1577' => 'dzi', 'Duzib133G0104' => 'dzi', 'Duzib133G1080' => 'dzi', 'Duzib138G0324' => 'dzi', 'Duzib138G0394' => 'dzi', 'Duzib205G0122' => 'dzi', 'Duzib268G1020' => 'dzi', 'Duzib268G1359' => 'dzi', 'ECA232G3929' => 'eca', 'ECA236G2210' => 'eca', 'ECA236G2287' => 'eca', 'ECA240G4568' => 'eca', 'ECA247G0894' => 'eca', 'EL10Ac1g00200' => 'bvu', 'EL10Ac1g00886' => 'bvu', 'EL10As1g23091' => 'bvu', 'EL10As1g23092' => 'bvu', 'Eucgr.A01284' => 'egr', 'Eucgr.A01285' => 'egr', 'Eucgr.D02456' => 'egr', 'Eucgr.E00018' => 'egr', 'Eucgr.E01439' => 'egr', 'Eucgr.G02859' => 'egr', 'FAN01G0168' => 'fan', 'FAN01G0453' => 'fan', 'FAN01G2761' => 'fan', 'FAN02G1239' => 'fan', 'FAN03G0645' => 'fan', 'FAN03G2707' => 'fan', 'FAN03G2978' => 'fan', 'FAN04G0227' => 'fan', 'FAN06G0091' => 'fan', 'FAN06G1418' => 'fan', 'FAN06G1512' => 'fan', 'FAN06G1986' => 'fan', 'FAN06G2905' => 'fan', 'FAN06G4325' => 'fan', 'FAN08G0033' => 'fan', 'FAN09G0642' => 'fan', 'FAN10G1763' => 'fan', 'FAN10G2026' => 'fan', 'FAN10G2513' => 'fan', 'FAN10G3402' => 'fan', 'FAN10G3564' => 'fan', 'FAN10G3987' => 'fan', 'FAN13G1490' => 'fan', 'FAN14G5857' => 'fan', 'FAN18G1188' => 'fan', 'FvH4_5g00750' => 'fve', 'FvH4_6g13410' => 'fve', 'FvH4_7g11740' => 'fve', 'FvH4_7g17410' => 'fve', 'FvH4_7g18860' => 'fve', 'Glyma.01G099100' => 'gma', 'Glyma.01G142300' => 'gma', 'Glyma.03G025500' => 'gma', 'Glyma.03G069700' => 'gma', 'Glyma.03G260000' => 'gma', 'Glyma.09G269800' => 'gma', 'Glyma.10G208700' => 'gma', 'Glyma.18G220400' => 'gma', 'Glyma.20G182000' => 'gma', 'Gohir.A01G221726' => 'ghi', 'Gohir.A07G134600' => 'ghi', 'Gohir.A07G146000' => 'ghi', 'Gohir.A08G173900' => 'ghi', 'Gohir.A09G194900' => 'ghi', 'Gohir.A10G204100' => 'ghi', 'Gohir.A11G080600' => 'ghi', 'Gohir.A11G327500' => 'ghi', 'Gohir.A12G101800' => 'ghi', 'Gohir.D01G211200' => 'ghi', 'Gohir.D07G139200' => 'ghi', 'Gohir.D07G152100' => 'ghi', 'Gohir.D08G192600' => 'ghi', 'Gohir.D09G189200' => 'ghi', 'Gohir.D10G212000' => 'ghi', 'Gohir.D11G085200' => 'ghi', 'Gohir.D11G346400' => 'ghi', 'Gohir.D12G104800' => 'ghi', 'Gorai.001G151300' => 'gra', 'Gorai.001G174100' => 'gra', 'Gorai.002G257000' => 'gra', 'Gorai.004G202600' => 'gra', 'Gorai.007G090900' => 'gra', 'Gorai.007G376700' => 'gra', 'Gorai.008G114100' => 'gra', 'Gorai.011G237900' => 'gra', 'GSVIVG01005450001' => 'vvi', 'GSVIVG01016232001' => 'vvi', 'GSVIVG01026157001' => 'vvi', 'GSVIVG01027419001' => 'vvi', 'GSVIVG01027631001' => 'vvi', 'GSVIVG01034143001' => 'vvi', 'HanXRQChr03g0093921' => 'han', 'HanXRQChr04g0120001' => 'han', 'HanXRQChr04g0122561' => 'han', 'HanXRQChr09g0246851' => 'han', 'HanXRQChr10g0293311' => 'han', 'HanXRQChr13g0425231' => 'han', 'HanXRQChr16g0532571' => 'han', 'Haze_09050' => 'cav', 'Haze_15715' => 'cav', 'Haze_15716' => 'cav', 'Haze_16803' => 'cav', 'Haze_16850' => 'cav', 'Hma1.2p1_0301F.1_g118655' => 'hma', 'Hma1.2p1_0309F.1_g120590' => 'hma', 'Hma1.2p1_0936F.1_g238900' => 'hma', 'Hma1.2p1_3552F.1_g336740' => 'hma', 'HPP92_003520' => 'vpl', 'HPP92_006628' => 'vpl', 'HPP92_006645' => 'vpl', 'HPP92_014669' => 'vpl', 'HPP92_015077' => 'vpl', 'Hund16742' => 'sun', 'Hund17022' => 'sun', 'Lalb_Chr02g0152131' => 'lal', 'Lalb_Chr05g0225371' => 'lal', 'Lalb_Chr07g0189841' => 'lal', 'Lalb_Chr07g0192961' => 'lal', 'Lalb_Chr12g0208221' => 'lal', 'Lalb_Chr13g0291211' => 'lal', 'Lalb_Chr13g0291781' => 'lal', 'Lalb_Chr18g0044651' => 'lal', 'Lalb_Chr21g0313731' => 'lal', 'Lj1g0022533' => 'lja', 'Lj2A18T50' => 'lonja', 'Lj2A92G93' => 'lonja', 'Lj3A965T73' => 'lonja', 'Lj3g0000673' => 'lja', 'Lj3g0002666' => 'lja', 'Lj4g0016985' => 'lja', 'Lj5g0003625' => 'lja', 'Lj7A529G36' => 'lonja', 'Lj9A569T49' => 'lonja', 'Lj9A604T63' => 'lonja', 'Lsat_1_v5_gn_3_132060' => 'lsa', 'Lsat_1_v5_gn_4_68941' => 'lsa', 'Lsat_1_v5_gn_5_95580' => 'lsa', 'Lsat_1_v5_gn_7_161' => 'lsa', 'Lsat_1_v5_gn_7_7041' => 'lsa', 'Lsat_1_v5_gn_9_33481' => 'lsa', 'Lsat_1_v5_gn_9_68260' => 'lsa', 'Manes.01G073100' => 'mes', 'Manes.01G266300' => 'mes', 'Manes.02G033300' => 'mes', 'Manes.05G017900' => 'mes', 'Manes.05G046100' => 'mes', 'Manes.08G080900' => 'mes', 'Manes.10G049400' => 'mes', 'Mapoly0009s0186' => 'mpo', 'Mapoly0036s0118' => 'mpo', 'Mapoly0101s0046' => 'mpo', 'MBI04_g30218_MAGBIO' => 'mbi', 'MBI04_g35564_MAGBIO' => 'mbi', 'MBI12_g34011_MAGBIO' => 'mbi', 'MBI14_g04655_MAGBIO' => 'mbi', 'MCO07G653' => 'mco', 'MCO10G173' => 'mco', 'MD01G1087100' => 'mdo', 'MD01G1104200' => 'mdo', 'MD02G1205100' => 'mdo', 'MD04G1079200' => 'mdo', 'MD04G1131400' => 'mdo', 'MD07G1121600' => 'mdo', 'MD07G1157300' => 'mdo', 'MD07G1171000' => 'mdo', 'MD12G1144500' => 'mdo', 'Medtr1g094610' => 'mtr', 'Medtr4g021795' => 'mtr', 'Medtr4g023760' => 'mtr', 'Medtr7g118050' => 'mtr', 'MELO3C005582.2' => 'cme', 'MELO3C005989.2' => 'cme', 'MELO3C006192.2' => 'cme', 'MELO3C009248.2' => 'cme', 'MELO3C019817.2' => 'cme', 'Migut.B01625' => 'egut', 'Migut.B01915' => 'egut', 'Migut.F01721' => 'egut', 'Migut.J00314' => 'egut', 'MSTRG.20742' => 'ama', 'MSTRG.8134' => 'ama', 'Nitab4.5_0000096g0010' => 'nta', 'Nitab4.5_0000202g0030' => 'nta', 'Nitab4.5_0000216g0370' => 'nta', 'Nitab4.5_0000457g0230' => 'nta', 'Nitab4.5_0001702g0170' => 'nta', 'Nitab4.5_0003607g0010' => 'nta', 'Nitab4.5_0004917g0020' => 'nta', 'Nitab4.5_0007059g0010' => 'nta', 'Nitab4.5_0007184g0010' => 'nta', 'Nitab4.5_0007346g0020' => 'nta', 'Nn1g00410' => 'nnu', 'Nn1g01252' => 'nnu', 'Nn2g11168' => 'nnu', 'Nn2g13403' => 'nnu', 'Nn2g13760' => 'nnu', 'Nn4g26380' => 'nnu', 'Oeu000806.2' => 'oeu', 'Oeu005788.1' => 'oeu', 'Oeu006900.3' => 'oeu', 'Oeu007797.1' => 'oeu', 'Oeu011932.1' => 'oeu', 'Oeu022739.1' => 'oeu', 'Oeu037918.1' => 'oeu', 'Oeu055490.2' => 'oeu', 'Os01g0844400' => 'osa', 'Os02g0819100' => 'osa', 'Os03g0804300' => 'osa', 'Os05g0458000' => 'osa', 'Os07g0467800' => 'osa', 'Os12g0602200' => 'osa', 'Peaxi162Scf00013g03444' => 'pax', 'Peaxi162Scf00094g01120' => 'pax', 'Peaxi162Scf00191g01211' => 'pax', 'Peaxi162Scf00238g01110' => 'pax', 'Peaxi162Scf00330g00719' => 'pax', 'Peaxi162Scf00627g00018' => 'pax', 'PGR031G2686' => 'pgr', 'PGR042G0809' => 'pgr', 'PGR142G0193' => 'pgr', 'PGSC0003DMG400011066' => 'stu', 'PGSC0003DMG400012041' => 'stu', 'PGSC0003DMG400013678' => 'stu', 'PGSC0003DMG400023477' => 'stu', 'PGSC0003DMG400025956' => 'stu', 'PGSC0003DMG401019151' => 'stu', 'Phvul.006G116400' => 'pvu', 'Phvul.007G097300' => 'pvu', 'Phvul.010G015000' => 'pvu', 'Phvul.010G083900' => 'pvu', 'Potri.001G117100' => 'ptr', 'Potri.002G147300' => 'ptr', 'Potri.003G115600' => 'ptr', 'Potri.006G087400' => 'ptr', 'Potri.010G226100' => 'ptr', 'Potri.014G069200' => 'ptr', 'Potri.014G104000' => 'ptr', 'Potri.016G100200' => 'ptr', 'Pp3c10_20450' => 'ppa', 'Pp3c1_42400' => 'ppa', 'Pp3c3_24390' => 'ppa', 'Pp3c3_2860' => 'ppa', 'PRCOL_00003193' => 'pco', 'Prupe.2G144500' => 'ppe', 'Prupe.2G195700' => 'ppe', 'Prupe.2G209800' => 'ppe', 'Prupe.5G080000' => 'ppe', 'Prupe.6G257900' => 'ppe', 'Psat3g001160' => 'psa', 'Psat6g181880' => 'psa', 'Psat7g233720' => 'psa', 'PSO063G7587' => 'pso', 'PSO339G2145' => 'pso', 'PSO339G3369' => 'pso', 'PSO478G2747' => 'pso', 'PSO513G0140' => 'pso', 'PSO782G1614' => 'pso', 'PSO782G4889' => 'pso', 'PSO782G5485' => 'pso', 'PSO801G0241' => 'pso', 'QL07p048854' => 'qlo', 'QL08p046745' => 'qlo', 'QL08p052606' => 'qlo', 'QL08p053414' => 'qlo', 'QL08p054868' => 'qlo', 'RcHm_v2.0_Chr1g0350251' => 'rch', 'RcHm_v2.0_Chr1g0360851' => 'rch', 'RcHm_v2.0_Chr1g0362791' => 'rch', 'RcHm_v2.0_Chr3g0466281' => 'rch', 'RcHm_v2.0_Chr7g0201481' => 'rch', 'Rhsim01G0148600' => 'rsi', 'Rhsim05G0194400' => 'rsi', 'Rhsim07G0000700' => 'rsi', 'Rhsim07G0000800' => 'rsi', 'Rhsim07G0027900' => 'rsi', 'Rhsim09G0149500' => 'rsi', 'RhsimUnG0186900' => 'rsi', 'Sabra01G0089900' => 'sbr', 'Sabra02G0114700' => 'sbr', 'Sabra02G0116300' => 'sbr', 'Sabra03G0080100' => 'sbr', 'Sabra08G0024300' => 'sbr', 'Sabra10G0174300' => 'sbr', 'Sabra14G0048900' => 'sbr', 'Sabra14G0076500' => 'sbr', 'SalBow5G2513' => 'sbo', 'Sc01g0002300' => 'sci', 'Sc01g0004450' => 'sci', 'Sc06g0001680' => 'sci', 'Sc23g0003580' => 'sci', 'Sed0000913' => 'sed', 'Sed0001655' => 'sed', 'Sed0007745' => 'sed', 'Sed0010951' => 'sed', 'Sed0017599' => 'sed', 'Sed0021405' => 'sed', 'Sed0022810' => 'sed', 'SEGI_07099' => 'sgi', 'SEGI_11931' => 'sgi', 'SEGI_13187' => 'sgi', 'SEGI_29958' => 'sgi', 'SEGI_36351' => 'sgi', 'SGA_v2.0_scaffold126G33770' => 'sas', 'SGA_v2.0_scaffold153G37003' => 'sas', 'SGA_v2.0_scaffold2G01359' => 'sas', 'SGA_v2.0_scaffold5G03064' => 'sas', 'SGA_v2.0_scaffold95G28903' => 'sas', 'SHI12701' => 'shi', 'SHI26410' => 'shi', 'SHI38997' => 'shi', 'SHI53759' => 'shi', 'SHI53886' => 'shi', 'SHI54714' => 'shi', 'SMO011G0041' => 'smo', 'SMO146G0251' => 'smo', 'SMO160G0004' => 'smo', 'SMO174G0057' => 'smo', 'SMO244G0089' => 'smo', 'SMO296G0011' => 'smo', 'Solyc01g091280.3' => 'sly', 'Solyc05g047610.3' => 'sly', 'Solyc05g047640.3' => 'sly', 'Solyc05g055630.3' => 'sly', 'Solyc10g018160.2' => 'sly', 'Solyc10g084820.2' => 'sly', 'Solyc10g086565.2' => 'sly', 'Sopen01g037030' => 'spe', 'Sopen05g027920' => 'spe', 'Sopen05g034070' => 'spe', 'Sopen10g007260' => 'spe', 'Sopen10g034260' => 'spe', 'Sopen10g035950' => 'spe', 'Sp3g07710' => 'spa', 'Sp4g27420' => 'spa', 'Sp5g02450' => 'spa', 'Sp6g01280' => 'spa', 'Sp6g38480' => 'spa', 'Sp7g20780' => 'spa', 'TAR374G1413' => 'tar', 'TAR623G1777' => 'tar', 'TAR629G2370' => 'tar', 'TAR633G1759' => 'tar', 'TAR636G3387' => 'tar', 'THA.LOC104802447' => 'tha', 'THA.LOC104813916' => 'tha', 'THA.LOC104816423' => 'tha', 'THA.LOC104817246' => 'tha', 'THA.LOC104825895' => 'tha', 'Thecc.01G335200' => 'tca', 'Thecc.01G377400' => 'tca', 'Thecc.03G262200' => 'tca', 'Thecc.05G036800' => 'tca', 'Thecc.10G080500' => 'tca', 'Thecc.10G080800' => 'tca', 'Thhalv10001560m.g' => 'esa', 'Thhalv10006120m.g' => 'esa', 'Thhalv10014375m.g' => 'esa', 'Thhalv10021264m.g' => 'esa', 'Thhalv10028856m.g' => 'esa', 'TPR.G1914' => 'tpr', 'TPR.G4757' => 'tpr', 'TPR.G5595' => 'tpr', 'TWI14G0952' => 'twi', 'TWI14G1307' => 'twi', 'TWI38G2143' => 'twi', 'TWI59G0826' => 'twi', 'TWI77G0527' => 'twi', 'TWI81G0150' => 'twi', 'unitig_21.g21018' => 'ugi', 'unitig_26.g9725' => 'ugi', 'unitig_744.g24653' => 'ugi', 'unitig_749.g13778' => 'ugi', 'unitig_899.g15035' => 'ugi', 'vmacro04296' => 'vma', 'vmacro04852' => 'vma', 'vmacro13404' => 'vma', 'vmacro20169' => 'vma', 'vmacro21014' => 'vma', 'VMungo0331G0237' => 'vmu', 'VMungo0331G0706' => 'vmu', 'VMungo0331G1361' => 'vmu', 'VMungo0331G1489' => 'vmu', 'VMungo0540G1037' => 'vmu', 'VMungo0720G2487' => 'vmu', 'VMungo0720G2721' => 'vmu', 'Zm00001eb086860' => 'zma', 'Zm00001eb104760' => 'zma', 'Zm00001eb148220' => 'zma', 'Zm00001eb259030' => 'zma', 'Zm00001eb289590' => 'zma', 'Zm00001eb420150' => 'zma' ), 'gf_id' => 'HOM05D000968', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000968' ), 'data_identifier' => 'HOM05D000968', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000968', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p31690' => 'bna', 'A03p36040' => 'bna', 'A03p53730' => 'bna', 'A04p01410' => 'bna', 'A05p05420' => 'bna', 'A05p39630' => 'bna', 'A05p39640' => 'bna', 'A09p00970' => 'bna', 'A09p53060' => 'bna', 'A10p31890' => 'bna', 'Aa31LG10G15040' => 'aar', 'Aa31LG1G21090' => 'aar', 'Aa31LG1G26900' => 'aar', 'Aa31LG3G1820' => 'aar', 'Aa31LG5G1100' => 'aar', 'Aa31LG6G4740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2265' => 'aag', 'Actinidia07998' => 'ach', 'Actinidia11266' => 'ach', 'Actinidia12682' => 'ach', 'Actinidia26479' => 'ach', 'Actinidia31406' => 'ach', 'Actinidia32437' => 'ach', 'Actinidia38862' => 'ach', 'Ah.05g174230' => 'amhyb', 'Ah.05g179070' => 'amhyb', 'Ah.05g179090' => 'amhyb', 'Ah.12g059950' => 'amhyb', 'AL3G20480' => 'aly', 'AL4G44520' => 'aly', 'AL5G43110' => 'aly', 'AL6G13890' => 'aly', 'AL6G52620' => 'aly', 'AL7G30830' => 'aly', 'Aqoxy1G00899' => 'aox', 'Aqoxy5G04333' => 'aox', 'Aqoxy7G00641' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3IZ0NN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4EF6AW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W9P8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79GA3M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C43NQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFCU6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G95YVJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCHK29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LU1UG8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX91RN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGB4B1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8DA0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9H7JI' => 'arhy', 'AT3G09320' => 'ath', 'AT3G60800' => 'ath', 'AT4G00840' => 'ath', 'AT4G22750' => 'ath', 'AT5G04270' => 'ath', 'ATR0090G003' => 'atr', 'ATR0559G349' => 'atr', 'ATR0680G261' => 'atr', 'ATR0810G048' => 'atr', 'Atru.chr12.831' => 'acertr', 'Atru.chr5.303' => 'acertr', 'Atru.chr5.748' => 'acertr', 'Atru.chr8.1999' => 'acertr', 'Atru.chr9.1436' => 'acertr', 'AUR62004211' => 'cqu', 'AUR62004548' => 'cqu', 'AUR62013637' => 'cqu', 'AUR62022662' => 'cqu', 'AUR62025777' => 'cqu', 'AUR62042386' => 'cqu', 'BcaB01g02310' => 'bca', 'BcaB01g06062' => 'bca', 'BcaB02g08975' => 'bca', 'BcaB02g08980' => 'bca', 'BcaC01g04228' => 'bca', 'BcaC01g06830' => 'bca', 'BcaC02g10186' => 'bca', 'BcaC02g12214' => 'bca', 'BcaC04g24101' => 'bca', 'BcaC05g29520' => 'bca', 'BcaC05g29661' => 'bca', 'BcaC06g32130' => 'bca', 'BcaC06g32131' => 'bca', 'BcaC07g40601' => 'bca', 'BcaC07g42641' => 'bca', 'BcaNung01038' => 'bca', 'BcaNung01676' => 'bca', 'BcaNung02480' => 'bca', 'BcaNung07376' => 'bca', 'BolC3t16146H' => 'bol', 'BolC3t16637H' => 'bol', 'BolC4t22257H' => 'bol', 'BolC4t24728H' => 'bol', 'BolC5t34517H' => 'bol', 'BolC7t45703H' => 'bol', 'BolC8t51166H' => 'bol', 'BolC9t53038H' => 'bol', 'BolC9t60000H' => 'bol', 'BraA01t01345Z' => 'bra', 'BraA01t01346Z' => 'bra', 'BraA01t01348Z' => 'bra', 'BraA03t12347Z' => 'bra', 'BraA03t12775Z' => 'bra', 'BraA03t14439Z' => 'bra', 'BraA04t15860Z' => 'bra', 'BraA05t19511Z' => 'bra', 'BraA05t22746Z' => 'bra', 'BraA09t35767Z' => 'bra', 'BraA09t40732Z' => 'bra', 'BraA10t45233Z' => 'bra', 'C03p38720' => 'bna', 'C03p43680' => 'bna', 'C04p06350' => 'bna', 'C04p31800' => 'bna', 'C05p58680' => 'bna', 'C07p52110' => 'bna', 'C08p35760' => 'bna', 'C09p01050' => 'bna', 'C09p72600' => 'bna', 'CAN.G106.2' => 'can', 'CAN.G1482.1' => 'can', 'CAN.G324.12' => 'can', 'CAN.G388.20' => 'can', 'CAN.G412.7' => 'can', 'CAN.G694.32' => 'can', 'CAN.G92.12' => 'can', 'CANSAT11G2353' => 'cansat', 'CANSAT21G1398' => 'cansat', 'CANSAT56G2456' => 'cansat', 'CANSAT56G3031' => 'cansat', 'CANSAT56G4539' => 'cansat', 'CARHR083680' => 'chi', 'CARHR171190' => 'chi', 'CARHR209010' => 'chi', 'CARHR229680' => 'chi', 'CARHR249490' => 'chi', 'Carub.0003s0844' => 'cru', 'Carub.0005s2755' => 'cru', 'Carub.0006s0322' => 'cru', 'Carub.0006s3586' => 'cru', 'Carub.0007s1855' => 'cru', 'Ca_07808_v3' => 'car', 'Ca_09535_v3' => 'car', 'Ca_10548_v3' => 'car', 'Ca_19913_v3' => 'car', 'Ca_19916_v3' => 'car', 'Ca_19975_v3' => 'car', 'CBR_g22876' => 'cbr', 'CBR_g22879' => 'cbr', 'CBR_g38491' => 'cbr', 'CBR_g54185' => 'cbr', 'CBR_g54190' => 'cbr', 'Cc02_g11020' => 'ccan', 'Cc02_g23920' => 'ccan', 'Cc02_g39860' => 'ccan', 'Cc02_g39870' => 'ccan', 'Cc03_g06760' => 'ccan', 'Cc06_g02450' => 'ccan', 'Cc09_g09450' => 'ccan', 'CDE02G1959' => 'cde', 'CDE04G0600' => 'cde', 'CDE07G1996' => 'cde', 'CDE07G2078' => 'cde', 'CDE11G0611' => 'cde', 'Cfa001683' => 'cfa', 'Cfa001734' => 'cfa', 'Cfa001737' => 'cfa', 'Cfa003751' => 'cfa', 'Cfa012019' => 'cfa', 'Cfa017353' => 'cfa', 'Cfa017732' => 'cfa', 'Cfa022464' => 'cfa', 'Ciclev10012400m.g' => 'ccl', 'Ciclev10021242m.g' => 'ccl', 'Ciclev10021302m.g' => 'ccl', 'Ciclev10021463m.g' => 'ccl', 'Ciclev10032359m.g' => 'ccl', 'CiPaw.01G081000' => 'cil', 'CiPaw.01G262500' => 'cil', 'CiPaw.01G269800' => 'cil', 'CiPaw.02G168400' => 'cil', 'CiPaw.05G119500' => 'cil', 'CiPaw.11G147300' => 'cil', 'ClCG01G003630' => 'cla', 'ClCG05G000510' => 'cla', 'ClCG05G002300' => 'cla', 'ClCG08G007650' => 'cla', 'ClCG10G021250' => 'cla', 'COL.COLO4_06218' => 'col', 'COL.COLO4_12538' => 'col', 'COL.COLO4_14775' => 'col', 'COL.COLO4_23875' => 'col', 'Cpa.g.sc141.16' => 'cpa', 'Cpa.g.sc169.16' => 'cpa', 'Cpa.g.sc244.4' => 'cpa', 'Cpa.g.sc244.5' => 'cpa', 'Cpa.g.sc29.87' => 'cpa', 'Cpa.g.sc53.115' => 'cpa', 'Cre03.g207502' => 'cre', 'Cre06.g277000' => 'cre', 'Cre09.g394050' => 'cre', 'CsaV3_3G007680' => 'csa', 'CsaV3_3G009710' => 'csa', 'CsaV3_3G034790' => 'csa', 'CsaV3_5G003750' => 'csa', 'CsaV3_6G036620' => 'csa', 'CSS0002288' => 'camsi', 'CSS0011250' => 'camsi', 'CSS0021619' => 'camsi', 'CSS0046701' => 'camsi', 'DCAR_006420' => 'dca', 'DCAR_006865' => 'dca', 'DCAR_008558' => 'dca', 'DCAR_028754' => 'dca', 'DCAR_028755' => 'dca', 'Dinv31218' => 'din', 'Dinv32371' => 'din', 'Dinv34250' => 'din', 'Dinv37156' => 'din', 'Dinv43704' => 'din', 'Duzib093G1811' => 'dzi', 'Duzib106G1622' => 'dzi', 'Duzib114G0504' => 'dzi', 'Duzib128G0338' => 'dzi', 'Duzib128G1577' => 'dzi', 'Duzib133G0104' => 'dzi', 'Duzib133G1080' => 'dzi', 'Duzib138G0324' => 'dzi', 'Duzib138G0394' => 'dzi', 'Duzib205G0122' => 'dzi', 'Duzib268G1020' => 'dzi', 'Duzib268G1359' => 'dzi', 'ECA232G3929' => 'eca', 'ECA236G2210' => 'eca', 'ECA236G2287' => 'eca', 'ECA240G4568' => 'eca', 'ECA247G0894' => 'eca', 'EL10Ac1g00200' => 'bvu', 'EL10Ac1g00886' => 'bvu', 'EL10As1g23091' => 'bvu', 'EL10As1g23092' => 'bvu', 'Eucgr.A01284' => 'egr', 'Eucgr.A01285' => 'egr', 'Eucgr.D02456' => 'egr', 'Eucgr.E00018' => 'egr', 'Eucgr.E01439' => 'egr', 'Eucgr.G02859' => 'egr', 'FAN01G0168' => 'fan', 'FAN01G0453' => 'fan', 'FAN01G2761' => 'fan', 'FAN02G1239' => 'fan', 'FAN03G0645' => 'fan', 'FAN03G2707' => 'fan', 'FAN03G2978' => 'fan', 'FAN04G0227' => 'fan', 'FAN06G0091' => 'fan', 'FAN06G1418' => 'fan', 'FAN06G1512' => 'fan', 'FAN06G1986' => 'fan', 'FAN06G2905' => 'fan', 'FAN06G4325' => 'fan', 'FAN08G0033' => 'fan', 'FAN09G0642' => 'fan', 'FAN10G1763' => 'fan', 'FAN10G2026' => 'fan', 'FAN10G2513' => 'fan', 'FAN10G3402' => 'fan', 'FAN10G3564' => 'fan', 'FAN10G3987' => 'fan', 'FAN13G1490' => 'fan', 'FAN14G5857' => 'fan', 'FAN18G1188' => 'fan', 'FvH4_5g00750' => 'fve', 'FvH4_6g13410' => 'fve', 'FvH4_7g11740' => 'fve', 'FvH4_7g17410' => 'fve', 'FvH4_7g18860' => 'fve', 'Glyma.01G099100' => 'gma', 'Glyma.01G142300' => 'gma', 'Glyma.03G025500' => 'gma', 'Glyma.03G069700' => 'gma', 'Glyma.03G260000' => 'gma', 'Glyma.09G269800' => 'gma', 'Glyma.10G208700' => 'gma', 'Glyma.18G220400' => 'gma', 'Glyma.20G182000' => 'gma', 'Gohir.A01G221726' => 'ghi', 'Gohir.A07G134600' => 'ghi', 'Gohir.A07G146000' => 'ghi', 'Gohir.A08G173900' => 'ghi', 'Gohir.A09G194900' => 'ghi', 'Gohir.A10G204100' => 'ghi', 'Gohir.A11G080600' => 'ghi', 'Gohir.A11G327500' => 'ghi', 'Gohir.A12G101800' => 'ghi', 'Gohir.D01G211200' => 'ghi', 'Gohir.D07G139200' => 'ghi', 'Gohir.D07G152100' => 'ghi', 'Gohir.D08G192600' => 'ghi', 'Gohir.D09G189200' => 'ghi', 'Gohir.D10G212000' => 'ghi', 'Gohir.D11G085200' => 'ghi', 'Gohir.D11G346400' => 'ghi', 'Gohir.D12G104800' => 'ghi', 'Gorai.001G151300' => 'gra', 'Gorai.001G174100' => 'gra', 'Gorai.002G257000' => 'gra', 'Gorai.004G202600' => 'gra', 'Gorai.007G090900' => 'gra', 'Gorai.007G376700' => 'gra', 'Gorai.008G114100' => 'gra', 'Gorai.011G237900' => 'gra', 'GSVIVG01005450001' => 'vvi', 'GSVIVG01016232001' => 'vvi', 'GSVIVG01026157001' => 'vvi', 'GSVIVG01027419001' => 'vvi', 'GSVIVG01027631001' => 'vvi', 'GSVIVG01034143001' => 'vvi', 'HanXRQChr03g0093921' => 'han', 'HanXRQChr04g0120001' => 'han', 'HanXRQChr04g0122561' => 'han', 'HanXRQChr09g0246851' => 'han', 'HanXRQChr10g0293311' => 'han', 'HanXRQChr13g0425231' => 'han', 'HanXRQChr16g0532571' => 'han', 'Haze_09050' => 'cav', 'Haze_15715' => 'cav', 'Haze_15716' => 'cav', 'Haze_16803' => 'cav', 'Haze_16850' => 'cav', 'Hma1.2p1_0301F.1_g118655' => 'hma', 'Hma1.2p1_0309F.1_g120590' => 'hma', 'Hma1.2p1_0936F.1_g238900' => 'hma', 'Hma1.2p1_3552F.1_g336740' => 'hma', 'HPP92_003520' => 'vpl', 'HPP92_006628' => 'vpl', 'HPP92_006645' => 'vpl', 'HPP92_014669' => 'vpl', 'HPP92_015077' => 'vpl', 'Hund16742' => 'sun', 'Hund17022' => 'sun', 'Lalb_Chr02g0152131' => 'lal', 'Lalb_Chr05g0225371' => 'lal', 'Lalb_Chr07g0189841' => 'lal', 'Lalb_Chr07g0192961' => 'lal', 'Lalb_Chr12g0208221' => 'lal', 'Lalb_Chr13g0291211' => 'lal', 'Lalb_Chr13g0291781' => 'lal', 'Lalb_Chr18g0044651' => 'lal', 'Lalb_Chr21g0313731' => 'lal', 'Lj1g0022533' => 'lja', 'Lj2A18T50' => 'lonja', 'Lj2A92G93' => 'lonja', 'Lj3A965T73' => 'lonja', 'Lj3g0000673' => 'lja', 'Lj3g0002666' => 'lja', 'Lj4g0016985' => 'lja', 'Lj5g0003625' => 'lja', 'Lj7A529G36' => 'lonja', 'Lj9A569T49' => 'lonja', 'Lj9A604T63' => 'lonja', 'Lsat_1_v5_gn_3_132060' => 'lsa', 'Lsat_1_v5_gn_4_68941' => 'lsa', 'Lsat_1_v5_gn_5_95580' => 'lsa', 'Lsat_1_v5_gn_7_161' => 'lsa', 'Lsat_1_v5_gn_7_7041' => 'lsa', 'Lsat_1_v5_gn_9_33481' => 'lsa', 'Lsat_1_v5_gn_9_68260' => 'lsa', 'Manes.01G073100' => 'mes', 'Manes.01G266300' => 'mes', 'Manes.02G033300' => 'mes', 'Manes.05G017900' => 'mes', 'Manes.05G046100' => 'mes', 'Manes.08G080900' => 'mes', 'Manes.10G049400' => 'mes', 'Mapoly0009s0186' => 'mpo', 'Mapoly0036s0118' => 'mpo', 'Mapoly0101s0046' => 'mpo', 'MBI04_g30218_MAGBIO' => 'mbi', 'MBI04_g35564_MAGBIO' => 'mbi', 'MBI12_g34011_MAGBIO' => 'mbi', 'MBI14_g04655_MAGBIO' => 'mbi', 'MCO07G653' => 'mco', 'MCO10G173' => 'mco', 'MD01G1087100' => 'mdo', 'MD01G1104200' => 'mdo', 'MD02G1205100' => 'mdo', 'MD04G1079200' => 'mdo', 'MD04G1131400' => 'mdo', 'MD07G1121600' => 'mdo', 'MD07G1157300' => 'mdo', 'MD07G1171000' => 'mdo', 'MD12G1144500' => 'mdo', 'Medtr1g094610' => 'mtr', 'Medtr4g021795' => 'mtr', 'Medtr4g023760' => 'mtr', 'Medtr7g118050' => 'mtr', 'MELO3C005582.2' => 'cme', 'MELO3C005989.2' => 'cme', 'MELO3C006192.2' => 'cme', 'MELO3C009248.2' => 'cme', 'MELO3C019817.2' => 'cme', 'Migut.B01625' => 'egut', 'Migut.B01915' => 'egut', 'Migut.F01721' => 'egut', 'Migut.J00314' => 'egut', 'MSTRG.20742' => 'ama', 'MSTRG.8134' => 'ama', 'Nitab4.5_0000096g0010' => 'nta', 'Nitab4.5_0000202g0030' => 'nta', 'Nitab4.5_0000216g0370' => 'nta', 'Nitab4.5_0000457g0230' => 'nta', 'Nitab4.5_0001702g0170' => 'nta', 'Nitab4.5_0003607g0010' => 'nta', 'Nitab4.5_0004917g0020' => 'nta', 'Nitab4.5_0007059g0010' => 'nta', 'Nitab4.5_0007184g0010' => 'nta', 'Nitab4.5_0007346g0020' => 'nta', 'Nn1g00410' => 'nnu', 'Nn1g01252' => 'nnu', 'Nn2g11168' => 'nnu', 'Nn2g13403' => 'nnu', 'Nn2g13760' => 'nnu', 'Nn4g26380' => 'nnu', 'Oeu000806.2' => 'oeu', 'Oeu005788.1' => 'oeu', 'Oeu006900.3' => 'oeu', 'Oeu007797.1' => 'oeu', 'Oeu011932.1' => 'oeu', 'Oeu022739.1' => 'oeu', 'Oeu037918.1' => 'oeu', 'Oeu055490.2' => 'oeu', 'Os01g0844400' => 'osa', 'Os02g0819100' => 'osa', 'Os03g0804300' => 'osa', 'Os05g0458000' => 'osa', 'Os07g0467800' => 'osa', 'Os12g0602200' => 'osa', 'Peaxi162Scf00013g03444' => 'pax', 'Peaxi162Scf00094g01120' => 'pax', 'Peaxi162Scf00191g01211' => 'pax', 'Peaxi162Scf00238g01110' => 'pax', 'Peaxi162Scf00330g00719' => 'pax', 'Peaxi162Scf00627g00018' => 'pax', 'PGR031G2686' => 'pgr', 'PGR042G0809' => 'pgr', 'PGR142G0193' => 'pgr', 'PGSC0003DMG400011066' => 'stu', 'PGSC0003DMG400012041' => 'stu', 'PGSC0003DMG400013678' => 'stu', 'PGSC0003DMG400023477' => 'stu', 'PGSC0003DMG400025956' => 'stu', 'PGSC0003DMG401019151' => 'stu', 'Phvul.006G116400' => 'pvu', 'Phvul.007G097300' => 'pvu', 'Phvul.010G015000' => 'pvu', 'Phvul.010G083900' => 'pvu', 'Potri.001G117100' => 'ptr', 'Potri.002G147300' => 'ptr', 'Potri.003G115600' => 'ptr', 'Potri.006G087400' => 'ptr', 'Potri.010G226100' => 'ptr', 'Potri.014G069200' => 'ptr', 'Potri.014G104000' => 'ptr', 'Potri.016G100200' => 'ptr', 'Pp3c10_20450' => 'ppa', 'Pp3c1_42400' => 'ppa', 'Pp3c3_24390' => 'ppa', 'Pp3c3_2860' => 'ppa', 'PRCOL_00003193' => 'pco', 'Prupe.2G144500' => 'ppe', 'Prupe.2G195700' => 'ppe', 'Prupe.2G209800' => 'ppe', 'Prupe.5G080000' => 'ppe', 'Prupe.6G257900' => 'ppe', 'Psat3g001160' => 'psa', 'Psat6g181880' => 'psa', 'Psat7g233720' => 'psa', 'PSO063G7587' => 'pso', 'PSO339G2145' => 'pso', 'PSO339G3369' => 'pso', 'PSO478G2747' => 'pso', 'PSO513G0140' => 'pso', 'PSO782G1614' => 'pso', 'PSO782G4889' => 'pso', 'PSO782G5485' => 'pso', 'PSO801G0241' => 'pso', 'QL07p048854' => 'qlo', 'QL08p046745' => 'qlo', 'QL08p052606' => 'qlo', 'QL08p053414' => 'qlo', 'QL08p054868' => 'qlo', 'RcHm_v2.0_Chr1g0350251' => 'rch', 'RcHm_v2.0_Chr1g0360851' => 'rch', 'RcHm_v2.0_Chr1g0362791' => 'rch', 'RcHm_v2.0_Chr3g0466281' => 'rch', 'RcHm_v2.0_Chr7g0201481' => 'rch', 'Rhsim01G0148600' => 'rsi', 'Rhsim05G0194400' => 'rsi', 'Rhsim07G0000700' => 'rsi', 'Rhsim07G0000800' => 'rsi', 'Rhsim07G0027900' => 'rsi', 'Rhsim09G0149500' => 'rsi', 'RhsimUnG0186900' => 'rsi', 'Sabra01G0089900' => 'sbr', 'Sabra02G0114700' => 'sbr', 'Sabra02G0116300' => 'sbr', 'Sabra03G0080100' => 'sbr', 'Sabra08G0024300' => 'sbr', 'Sabra10G0174300' => 'sbr', 'Sabra14G0048900' => 'sbr', 'Sabra14G0076500' => 'sbr', 'SalBow5G2513' => 'sbo', 'Sc01g0002300' => 'sci', 'Sc01g0004450' => 'sci', 'Sc06g0001680' => 'sci', 'Sc23g0003580' => 'sci', 'Sed0000913' => 'sed', 'Sed0001655' => 'sed', 'Sed0007745' => 'sed', 'Sed0010951' => 'sed', 'Sed0017599' => 'sed', 'Sed0021405' => 'sed', 'Sed0022810' => 'sed', 'SEGI_07099' => 'sgi', 'SEGI_11931' => 'sgi', 'SEGI_13187' => 'sgi', 'SEGI_29958' => 'sgi', 'SEGI_36351' => 'sgi', 'SGA_v2.0_scaffold126G33770' => 'sas', 'SGA_v2.0_scaffold153G37003' => 'sas', 'SGA_v2.0_scaffold2G01359' => 'sas', 'SGA_v2.0_scaffold5G03064' => 'sas', 'SGA_v2.0_scaffold95G28903' => 'sas', 'SHI12701' => 'shi', 'SHI26410' => 'shi', 'SHI38997' => 'shi', 'SHI53759' => 'shi', 'SHI53886' => 'shi', 'SHI54714' => 'shi', 'SMO011G0041' => 'smo', 'SMO146G0251' => 'smo', 'SMO160G0004' => 'smo', 'SMO174G0057' => 'smo', 'SMO244G0089' => 'smo', 'SMO296G0011' => 'smo', 'Solyc01g091280.3' => 'sly', 'Solyc05g047610.3' => 'sly', 'Solyc05g047640.3' => 'sly', 'Solyc05g055630.3' => 'sly', 'Solyc10g018160.2' => 'sly', 'Solyc10g084820.2' => 'sly', 'Solyc10g086565.2' => 'sly', 'Sopen01g037030' => 'spe', 'Sopen05g027920' => 'spe', 'Sopen05g034070' => 'spe', 'Sopen10g007260' => 'spe', 'Sopen10g034260' => 'spe', 'Sopen10g035950' => 'spe', 'Sp3g07710' => 'spa', 'Sp4g27420' => 'spa', 'Sp5g02450' => 'spa', 'Sp6g01280' => 'spa', 'Sp6g38480' => 'spa', 'Sp7g20780' => 'spa', 'TAR374G1413' => 'tar', 'TAR623G1777' => 'tar', 'TAR629G2370' => 'tar', 'TAR633G1759' => 'tar', 'TAR636G3387' => 'tar', 'THA.LOC104802447' => 'tha', 'THA.LOC104813916' => 'tha', 'THA.LOC104816423' => 'tha', 'THA.LOC104817246' => 'tha', 'THA.LOC104825895' => 'tha', 'Thecc.01G335200' => 'tca', 'Thecc.01G377400' => 'tca', 'Thecc.03G262200' => 'tca', 'Thecc.05G036800' => 'tca', 'Thecc.10G080500' => 'tca', 'Thecc.10G080800' => 'tca', 'Thhalv10001560m.g' => 'esa', 'Thhalv10006120m.g' => 'esa', 'Thhalv10014375m.g' => 'esa', 'Thhalv10021264m.g' => 'esa', 'Thhalv10028856m.g' => 'esa', 'TPR.G1914' => 'tpr', 'TPR.G4757' => 'tpr', 'TPR.G5595' => 'tpr', 'TWI14G0952' => 'twi', 'TWI14G1307' => 'twi', 'TWI38G2143' => 'twi', 'TWI59G0826' => 'twi', 'TWI77G0527' => 'twi', 'TWI81G0150' => 'twi', 'unitig_21.g21018' => 'ugi', 'unitig_26.g9725' => 'ugi', 'unitig_744.g24653' => 'ugi', 'unitig_749.g13778' => 'ugi', 'unitig_899.g15035' => 'ugi', 'vmacro04296' => 'vma', 'vmacro04852' => 'vma', 'vmacro13404' => 'vma', 'vmacro20169' => 'vma', 'vmacro21014' => 'vma', 'VMungo0331G0237' => 'vmu', 'VMungo0331G0706' => 'vmu', 'VMungo0331G1361' => 'vmu', 'VMungo0331G1489' => 'vmu', 'VMungo0540G1037' => 'vmu', 'VMungo0720G2487' => 'vmu', 'VMungo0720G2721' => 'vmu', 'Zm00001eb086860' => 'zma', 'Zm00001eb104760' => 'zma', 'Zm00001eb148220' => 'zma', 'Zm00001eb259030' => 'zma', 'Zm00001eb289590' => 'zma', 'Zm00001eb420150' => 'zma' ) $gf_id = 'HOM05D000968' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000968' ) $data_identifier = 'HOM05D000968' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 19, 'bol' => (int) 9, 'bra' => (int) 12, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 5, 'ccan' => (int) 7, 'cde' => (int) 5, 'cfa' => (int) 8, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 4, 'dca' => (int) 5, 'din' => (int) 5, 'dzi' => (int) 12, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 25, 'fve' => (int) 5, 'gma' => (int) 9, 'ghi' => (int) 18, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 7, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 5, 'sun' => (int) 2, 'lal' => (int) 9, 'lja' => (int) 5, 'lonja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 9, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 2, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 3, 'stu' => (int) 6, 'pvu' => (int) 4, 'ptr' => (int) 8, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 3, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 1, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 5, 'sas' => (int) 5, 'shi' => (int) 6, 'smo' => (int) 6, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 3, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420150' $species_info = array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ) $local_species = 'psa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000968', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p31690' => 'bna', 'A03p36040' => 'bna', 'A03p53730' => 'bna', 'A04p01410' => 'bna', 'A05p05420' => 'bna', 'A05p39630' => 'bna', 'A05p39640' => 'bna', 'A09p00970' => 'bna', 'A09p53060' => 'bna', 'A10p31890' => 'bna', 'Aa31LG10G15040' => 'aar', 'Aa31LG1G21090' => 'aar', 'Aa31LG1G26900' => 'aar', 'Aa31LG3G1820' => 'aar', 'Aa31LG5G1100' => 'aar', 'Aa31LG6G4740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2265' => 'aag', 'Actinidia07998' => 'ach', 'Actinidia11266' => 'ach', 'Actinidia12682' => 'ach', 'Actinidia26479' => 'ach', 'Actinidia31406' => 'ach', 'Actinidia32437' => 'ach', 'Actinidia38862' => 'ach', 'Ah.05g174230' => 'amhyb', 'Ah.05g179070' => 'amhyb', 'Ah.05g179090' => 'amhyb', 'Ah.12g059950' => 'amhyb', 'AL3G20480' => 'aly', 'AL4G44520' => 'aly', 'AL5G43110' => 'aly', 'AL6G13890' => 'aly', 'AL6G52620' => 'aly', 'AL7G30830' => 'aly', 'Aqoxy1G00899' => 'aox', 'Aqoxy5G04333' => 'aox', 'Aqoxy7G00641' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3IZ0NN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4EF6AW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W9P8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79GA3M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C43NQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFCU6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G95YVJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCHK29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LU1UG8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX91RN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGB4B1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8DA0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9H7JI' => 'arhy', 'AT3G09320' => 'ath', 'AT3G60800' => 'ath', 'AT4G00840' => 'ath', 'AT4G22750' => 'ath', 'AT5G04270' => 'ath', 'ATR0090G003' => 'atr', 'ATR0559G349' => 'atr', 'ATR0680G261' => 'atr', 'ATR0810G048' => 'atr', 'Atru.chr12.831' => 'acertr', 'Atru.chr5.303' => 'acertr', 'Atru.chr5.748' => 'acertr', 'Atru.chr8.1999' => 'acertr', 'Atru.chr9.1436' => 'acertr', 'AUR62004211' => 'cqu', 'AUR62004548' => 'cqu', 'AUR62013637' => 'cqu', 'AUR62022662' => 'cqu', 'AUR62025777' => 'cqu', 'AUR62042386' => 'cqu', 'BcaB01g02310' => 'bca', 'BcaB01g06062' => 'bca', 'BcaB02g08975' => 'bca', 'BcaB02g08980' => 'bca', 'BcaC01g04228' => 'bca', 'BcaC01g06830' => 'bca', 'BcaC02g10186' => 'bca', 'BcaC02g12214' => 'bca', 'BcaC04g24101' => 'bca', 'BcaC05g29520' => 'bca', 'BcaC05g29661' => 'bca', 'BcaC06g32130' => 'bca', 'BcaC06g32131' => 'bca', 'BcaC07g40601' => 'bca', 'BcaC07g42641' => 'bca', 'BcaNung01038' => 'bca', 'BcaNung01676' => 'bca', 'BcaNung02480' => 'bca', 'BcaNung07376' => 'bca', 'BolC3t16146H' => 'bol', 'BolC3t16637H' => 'bol', 'BolC4t22257H' => 'bol', 'BolC4t24728H' => 'bol', 'BolC5t34517H' => 'bol', 'BolC7t45703H' => 'bol', 'BolC8t51166H' => 'bol', 'BolC9t53038H' => 'bol', 'BolC9t60000H' => 'bol', 'BraA01t01345Z' => 'bra', 'BraA01t01346Z' => 'bra', 'BraA01t01348Z' => 'bra', 'BraA03t12347Z' => 'bra', 'BraA03t12775Z' => 'bra', 'BraA03t14439Z' => 'bra', 'BraA04t15860Z' => 'bra', 'BraA05t19511Z' => 'bra', 'BraA05t22746Z' => 'bra', 'BraA09t35767Z' => 'bra', 'BraA09t40732Z' => 'bra', 'BraA10t45233Z' => 'bra', 'C03p38720' => 'bna', 'C03p43680' => 'bna', 'C04p06350' => 'bna', 'C04p31800' => 'bna', 'C05p58680' => 'bna', 'C07p52110' => 'bna', 'C08p35760' => 'bna', 'C09p01050' => 'bna', 'C09p72600' => 'bna', 'CAN.G106.2' => 'can', 'CAN.G1482.1' => 'can', 'CAN.G324.12' => 'can', 'CAN.G388.20' => 'can', 'CAN.G412.7' => 'can', 'CAN.G694.32' => 'can', 'CAN.G92.12' => 'can', 'CANSAT11G2353' => 'cansat', 'CANSAT21G1398' => 'cansat', 'CANSAT56G2456' => 'cansat', 'CANSAT56G3031' => 'cansat', 'CANSAT56G4539' => 'cansat', 'CARHR083680' => 'chi', 'CARHR171190' => 'chi', 'CARHR209010' => 'chi', 'CARHR229680' => 'chi', 'CARHR249490' => 'chi', 'Carub.0003s0844' => 'cru', 'Carub.0005s2755' => 'cru', 'Carub.0006s0322' => 'cru', 'Carub.0006s3586' => 'cru', 'Carub.0007s1855' => 'cru', 'Ca_07808_v3' => 'car', 'Ca_09535_v3' => 'car', 'Ca_10548_v3' => 'car', 'Ca_19913_v3' => 'car', 'Ca_19916_v3' => 'car', 'Ca_19975_v3' => 'car', 'CBR_g22876' => 'cbr', 'CBR_g22879' => 'cbr', 'CBR_g38491' => 'cbr', 'CBR_g54185' => 'cbr', 'CBR_g54190' => 'cbr', 'Cc02_g11020' => 'ccan', 'Cc02_g23920' => 'ccan', 'Cc02_g39860' => 'ccan', 'Cc02_g39870' => 'ccan', 'Cc03_g06760' => 'ccan', 'Cc06_g02450' => 'ccan', 'Cc09_g09450' => 'ccan', 'CDE02G1959' => 'cde', 'CDE04G0600' => 'cde', 'CDE07G1996' => 'cde', 'CDE07G2078' => 'cde', 'CDE11G0611' => 'cde', 'Cfa001683' => 'cfa', 'Cfa001734' => 'cfa', 'Cfa001737' => 'cfa', 'Cfa003751' => 'cfa', 'Cfa012019' => 'cfa', 'Cfa017353' => 'cfa', 'Cfa017732' => 'cfa', 'Cfa022464' => 'cfa', 'Ciclev10012400m.g' => 'ccl', 'Ciclev10021242m.g' => 'ccl', 'Ciclev10021302m.g' => 'ccl', 'Ciclev10021463m.g' => 'ccl', 'Ciclev10032359m.g' => 'ccl', 'CiPaw.01G081000' => 'cil', 'CiPaw.01G262500' => 'cil', 'CiPaw.01G269800' => 'cil', 'CiPaw.02G168400' => 'cil', 'CiPaw.05G119500' => 'cil', 'CiPaw.11G147300' => 'cil', 'ClCG01G003630' => 'cla', 'ClCG05G000510' => 'cla', 'ClCG05G002300' => 'cla', 'ClCG08G007650' => 'cla', 'ClCG10G021250' => 'cla', 'COL.COLO4_06218' => 'col', 'COL.COLO4_12538' => 'col', 'COL.COLO4_14775' => 'col', 'COL.COLO4_23875' => 'col', 'Cpa.g.sc141.16' => 'cpa', 'Cpa.g.sc169.16' => 'cpa', 'Cpa.g.sc244.4' => 'cpa', 'Cpa.g.sc244.5' => 'cpa', 'Cpa.g.sc29.87' => 'cpa', 'Cpa.g.sc53.115' => 'cpa', 'Cre03.g207502' => 'cre', 'Cre06.g277000' => 'cre', 'Cre09.g394050' => 'cre', 'CsaV3_3G007680' => 'csa', 'CsaV3_3G009710' => 'csa', 'CsaV3_3G034790' => 'csa', 'CsaV3_5G003750' => 'csa', 'CsaV3_6G036620' => 'csa', 'CSS0002288' => 'camsi', 'CSS0011250' => 'camsi', 'CSS0021619' => 'camsi', 'CSS0046701' => 'camsi', 'DCAR_006420' => 'dca', 'DCAR_006865' => 'dca', 'DCAR_008558' => 'dca', 'DCAR_028754' => 'dca', 'DCAR_028755' => 'dca', 'Dinv31218' => 'din', 'Dinv32371' => 'din', 'Dinv34250' => 'din', 'Dinv37156' => 'din', 'Dinv43704' => 'din', 'Duzib093G1811' => 'dzi', 'Duzib106G1622' => 'dzi', 'Duzib114G0504' => 'dzi', 'Duzib128G0338' => 'dzi', 'Duzib128G1577' => 'dzi', 'Duzib133G0104' => 'dzi', 'Duzib133G1080' => 'dzi', 'Duzib138G0324' => 'dzi', 'Duzib138G0394' => 'dzi', 'Duzib205G0122' => 'dzi', 'Duzib268G1020' => 'dzi', 'Duzib268G1359' => 'dzi', 'ECA232G3929' => 'eca', 'ECA236G2210' => 'eca', 'ECA236G2287' => 'eca', 'ECA240G4568' => 'eca', 'ECA247G0894' => 'eca', 'EL10Ac1g00200' => 'bvu', 'EL10Ac1g00886' => 'bvu', 'EL10As1g23091' => 'bvu', 'EL10As1g23092' => 'bvu', 'Eucgr.A01284' => 'egr', 'Eucgr.A01285' => 'egr', 'Eucgr.D02456' => 'egr', 'Eucgr.E00018' => 'egr', 'Eucgr.E01439' => 'egr', 'Eucgr.G02859' => 'egr', 'FAN01G0168' => 'fan', 'FAN01G0453' => 'fan', 'FAN01G2761' => 'fan', 'FAN02G1239' => 'fan', 'FAN03G0645' => 'fan', 'FAN03G2707' => 'fan', 'FAN03G2978' => 'fan', 'FAN04G0227' => 'fan', 'FAN06G0091' => 'fan', 'FAN06G1418' => 'fan', 'FAN06G1512' => 'fan', 'FAN06G1986' => 'fan', 'FAN06G2905' => 'fan', 'FAN06G4325' => 'fan', 'FAN08G0033' => 'fan', 'FAN09G0642' => 'fan', 'FAN10G1763' => 'fan', 'FAN10G2026' => 'fan', 'FAN10G2513' => 'fan', 'FAN10G3402' => 'fan', 'FAN10G3564' => 'fan', 'FAN10G3987' => 'fan', 'FAN13G1490' => 'fan', 'FAN14G5857' => 'fan', 'FAN18G1188' => 'fan', 'FvH4_5g00750' => 'fve', 'FvH4_6g13410' => 'fve', 'FvH4_7g11740' => 'fve', 'FvH4_7g17410' => 'fve', 'FvH4_7g18860' => 'fve', 'Glyma.01G099100' => 'gma', 'Glyma.01G142300' => 'gma', 'Glyma.03G025500' => 'gma', 'Glyma.03G069700' => 'gma', 'Glyma.03G260000' => 'gma', 'Glyma.09G269800' => 'gma', 'Glyma.10G208700' => 'gma', 'Glyma.18G220400' => 'gma', 'Glyma.20G182000' => 'gma', 'Gohir.A01G221726' => 'ghi', 'Gohir.A07G134600' => 'ghi', 'Gohir.A07G146000' => 'ghi', 'Gohir.A08G173900' => 'ghi', 'Gohir.A09G194900' => 'ghi', 'Gohir.A10G204100' => 'ghi', 'Gohir.A11G080600' => 'ghi', 'Gohir.A11G327500' => 'ghi', 'Gohir.A12G101800' => 'ghi', 'Gohir.D01G211200' => 'ghi', 'Gohir.D07G139200' => 'ghi', 'Gohir.D07G152100' => 'ghi', 'Gohir.D08G192600' => 'ghi', 'Gohir.D09G189200' => 'ghi', 'Gohir.D10G212000' => 'ghi', 'Gohir.D11G085200' => 'ghi', 'Gohir.D11G346400' => 'ghi', 'Gohir.D12G104800' => 'ghi', 'Gorai.001G151300' => 'gra', 'Gorai.001G174100' => 'gra', 'Gorai.002G257000' => 'gra', 'Gorai.004G202600' => 'gra', 'Gorai.007G090900' => 'gra', 'Gorai.007G376700' => 'gra', 'Gorai.008G114100' => 'gra', 'Gorai.011G237900' => 'gra', 'GSVIVG01005450001' => 'vvi', 'GSVIVG01016232001' => 'vvi', 'GSVIVG01026157001' => 'vvi', 'GSVIVG01027419001' => 'vvi', 'GSVIVG01027631001' => 'vvi', 'GSVIVG01034143001' => 'vvi', 'HanXRQChr03g0093921' => 'han', 'HanXRQChr04g0120001' => 'han', 'HanXRQChr04g0122561' => 'han', 'HanXRQChr09g0246851' => 'han', 'HanXRQChr10g0293311' => 'han', 'HanXRQChr13g0425231' => 'han', 'HanXRQChr16g0532571' => 'han', 'Haze_09050' => 'cav', 'Haze_15715' => 'cav', 'Haze_15716' => 'cav', 'Haze_16803' => 'cav', 'Haze_16850' => 'cav', 'Hma1.2p1_0301F.1_g118655' => 'hma', 'Hma1.2p1_0309F.1_g120590' => 'hma', 'Hma1.2p1_0936F.1_g238900' => 'hma', 'Hma1.2p1_3552F.1_g336740' => 'hma', 'HPP92_003520' => 'vpl', 'HPP92_006628' => 'vpl', 'HPP92_006645' => 'vpl', 'HPP92_014669' => 'vpl', 'HPP92_015077' => 'vpl', 'Hund16742' => 'sun', 'Hund17022' => 'sun', 'Lalb_Chr02g0152131' => 'lal', 'Lalb_Chr05g0225371' => 'lal', 'Lalb_Chr07g0189841' => 'lal', 'Lalb_Chr07g0192961' => 'lal', 'Lalb_Chr12g0208221' => 'lal', 'Lalb_Chr13g0291211' => 'lal', 'Lalb_Chr13g0291781' => 'lal', 'Lalb_Chr18g0044651' => 'lal', 'Lalb_Chr21g0313731' => 'lal', 'Lj1g0022533' => 'lja', 'Lj2A18T50' => 'lonja', 'Lj2A92G93' => 'lonja', 'Lj3A965T73' => 'lonja', 'Lj3g0000673' => 'lja', 'Lj3g0002666' => 'lja', 'Lj4g0016985' => 'lja', 'Lj5g0003625' => 'lja', 'Lj7A529G36' => 'lonja', 'Lj9A569T49' => 'lonja', 'Lj9A604T63' => 'lonja', 'Lsat_1_v5_gn_3_132060' => 'lsa', 'Lsat_1_v5_gn_4_68941' => 'lsa', 'Lsat_1_v5_gn_5_95580' => 'lsa', 'Lsat_1_v5_gn_7_161' => 'lsa', 'Lsat_1_v5_gn_7_7041' => 'lsa', 'Lsat_1_v5_gn_9_33481' => 'lsa', 'Lsat_1_v5_gn_9_68260' => 'lsa', 'Manes.01G073100' => 'mes', 'Manes.01G266300' => 'mes', 'Manes.02G033300' => 'mes', 'Manes.05G017900' => 'mes', 'Manes.05G046100' => 'mes', 'Manes.08G080900' => 'mes', 'Manes.10G049400' => 'mes', 'Mapoly0009s0186' => 'mpo', 'Mapoly0036s0118' => 'mpo', 'Mapoly0101s0046' => 'mpo', 'MBI04_g30218_MAGBIO' => 'mbi', 'MBI04_g35564_MAGBIO' => 'mbi', 'MBI12_g34011_MAGBIO' => 'mbi', 'MBI14_g04655_MAGBIO' => 'mbi', 'MCO07G653' => 'mco', 'MCO10G173' => 'mco', 'MD01G1087100' => 'mdo', 'MD01G1104200' => 'mdo', 'MD02G1205100' => 'mdo', 'MD04G1079200' => 'mdo', 'MD04G1131400' => 'mdo', 'MD07G1121600' => 'mdo', 'MD07G1157300' => 'mdo', 'MD07G1171000' => 'mdo', 'MD12G1144500' => 'mdo', 'Medtr1g094610' => 'mtr', 'Medtr4g021795' => 'mtr', 'Medtr4g023760' => 'mtr', 'Medtr7g118050' => 'mtr', 'MELO3C005582.2' => 'cme', 'MELO3C005989.2' => 'cme', 'MELO3C006192.2' => 'cme', 'MELO3C009248.2' => 'cme', 'MELO3C019817.2' => 'cme', 'Migut.B01625' => 'egut', 'Migut.B01915' => 'egut', 'Migut.F01721' => 'egut', 'Migut.J00314' => 'egut', 'MSTRG.20742' => 'ama', 'MSTRG.8134' => 'ama', 'Nitab4.5_0000096g0010' => 'nta', 'Nitab4.5_0000202g0030' => 'nta', 'Nitab4.5_0000216g0370' => 'nta', 'Nitab4.5_0000457g0230' => 'nta', 'Nitab4.5_0001702g0170' => 'nta', 'Nitab4.5_0003607g0010' => 'nta', 'Nitab4.5_0004917g0020' => 'nta', 'Nitab4.5_0007059g0010' => 'nta', 'Nitab4.5_0007184g0010' => 'nta', 'Nitab4.5_0007346g0020' => 'nta', 'Nn1g00410' => 'nnu', 'Nn1g01252' => 'nnu', 'Nn2g11168' => 'nnu', 'Nn2g13403' => 'nnu', 'Nn2g13760' => 'nnu', 'Nn4g26380' => 'nnu', 'Oeu000806.2' => 'oeu', 'Oeu005788.1' => 'oeu', 'Oeu006900.3' => 'oeu', 'Oeu007797.1' => 'oeu', 'Oeu011932.1' => 'oeu', 'Oeu022739.1' => 'oeu', 'Oeu037918.1' => 'oeu', 'Oeu055490.2' => 'oeu', 'Os01g0844400' => 'osa', 'Os02g0819100' => 'osa', 'Os03g0804300' => 'osa', 'Os05g0458000' => 'osa', 'Os07g0467800' => 'osa', 'Os12g0602200' => 'osa', 'Peaxi162Scf00013g03444' => 'pax', 'Peaxi162Scf00094g01120' => 'pax', 'Peaxi162Scf00191g01211' => 'pax', 'Peaxi162Scf00238g01110' => 'pax', 'Peaxi162Scf00330g00719' => 'pax', 'Peaxi162Scf00627g00018' => 'pax', 'PGR031G2686' => 'pgr', 'PGR042G0809' => 'pgr', 'PGR142G0193' => 'pgr', 'PGSC0003DMG400011066' => 'stu', 'PGSC0003DMG400012041' => 'stu', 'PGSC0003DMG400013678' => 'stu', 'PGSC0003DMG400023477' => 'stu', 'PGSC0003DMG400025956' => 'stu', 'PGSC0003DMG401019151' => 'stu', 'Phvul.006G116400' => 'pvu', 'Phvul.007G097300' => 'pvu', 'Phvul.010G015000' => 'pvu', 'Phvul.010G083900' => 'pvu', 'Potri.001G117100' => 'ptr', 'Potri.002G147300' => 'ptr', 'Potri.003G115600' => 'ptr', 'Potri.006G087400' => 'ptr', 'Potri.010G226100' => 'ptr', 'Potri.014G069200' => 'ptr', 'Potri.014G104000' => 'ptr', 'Potri.016G100200' => 'ptr', 'Pp3c10_20450' => 'ppa', 'Pp3c1_42400' => 'ppa', 'Pp3c3_24390' => 'ppa', 'Pp3c3_2860' => 'ppa', 'PRCOL_00003193' => 'pco', 'Prupe.2G144500' => 'ppe', 'Prupe.2G195700' => 'ppe', 'Prupe.2G209800' => 'ppe', 'Prupe.5G080000' => 'ppe', 'Prupe.6G257900' => 'ppe', 'Psat3g001160' => 'psa', 'Psat6g181880' => 'psa', 'Psat7g233720' => 'psa', 'PSO063G7587' => 'pso', 'PSO339G2145' => 'pso', 'PSO339G3369' => 'pso', 'PSO478G2747' => 'pso', 'PSO513G0140' => 'pso', 'PSO782G1614' => 'pso', 'PSO782G4889' => 'pso', 'PSO782G5485' => 'pso', 'PSO801G0241' => 'pso', 'QL07p048854' => 'qlo', 'QL08p046745' => 'qlo', 'QL08p052606' => 'qlo', 'QL08p053414' => 'qlo', 'QL08p054868' => 'qlo', 'RcHm_v2.0_Chr1g0350251' => 'rch', 'RcHm_v2.0_Chr1g0360851' => 'rch', 'RcHm_v2.0_Chr1g0362791' => 'rch', 'RcHm_v2.0_Chr3g0466281' => 'rch', 'RcHm_v2.0_Chr7g0201481' => 'rch', 'Rhsim01G0148600' => 'rsi', 'Rhsim05G0194400' => 'rsi', 'Rhsim07G0000700' => 'rsi', 'Rhsim07G0000800' => 'rsi', 'Rhsim07G0027900' => 'rsi', 'Rhsim09G0149500' => 'rsi', 'RhsimUnG0186900' => 'rsi', 'Sabra01G0089900' => 'sbr', 'Sabra02G0114700' => 'sbr', 'Sabra02G0116300' => 'sbr', 'Sabra03G0080100' => 'sbr', 'Sabra08G0024300' => 'sbr', 'Sabra10G0174300' => 'sbr', 'Sabra14G0048900' => 'sbr', 'Sabra14G0076500' => 'sbr', 'SalBow5G2513' => 'sbo', 'Sc01g0002300' => 'sci', 'Sc01g0004450' => 'sci', 'Sc06g0001680' => 'sci', 'Sc23g0003580' => 'sci', 'Sed0000913' => 'sed', 'Sed0001655' => 'sed', 'Sed0007745' => 'sed', 'Sed0010951' => 'sed', 'Sed0017599' => 'sed', 'Sed0021405' => 'sed', 'Sed0022810' => 'sed', 'SEGI_07099' => 'sgi', 'SEGI_11931' => 'sgi', 'SEGI_13187' => 'sgi', 'SEGI_29958' => 'sgi', 'SEGI_36351' => 'sgi', 'SGA_v2.0_scaffold126G33770' => 'sas', 'SGA_v2.0_scaffold153G37003' => 'sas', 'SGA_v2.0_scaffold2G01359' => 'sas', 'SGA_v2.0_scaffold5G03064' => 'sas', 'SGA_v2.0_scaffold95G28903' => 'sas', 'SHI12701' => 'shi', 'SHI26410' => 'shi', 'SHI38997' => 'shi', 'SHI53759' => 'shi', 'SHI53886' => 'shi', 'SHI54714' => 'shi', 'SMO011G0041' => 'smo', 'SMO146G0251' => 'smo', 'SMO160G0004' => 'smo', 'SMO174G0057' => 'smo', 'SMO244G0089' => 'smo', 'SMO296G0011' => 'smo', 'Solyc01g091280.3' => 'sly', 'Solyc05g047610.3' => 'sly', 'Solyc05g047640.3' => 'sly', 'Solyc05g055630.3' => 'sly', 'Solyc10g018160.2' => 'sly', 'Solyc10g084820.2' => 'sly', 'Solyc10g086565.2' => 'sly', 'Sopen01g037030' => 'spe', 'Sopen05g027920' => 'spe', 'Sopen05g034070' => 'spe', 'Sopen10g007260' => 'spe', 'Sopen10g034260' => 'spe', 'Sopen10g035950' => 'spe', 'Sp3g07710' => 'spa', 'Sp4g27420' => 'spa', 'Sp5g02450' => 'spa', 'Sp6g01280' => 'spa', 'Sp6g38480' => 'spa', 'Sp7g20780' => 'spa', 'TAR374G1413' => 'tar', 'TAR623G1777' => 'tar', 'TAR629G2370' => 'tar', 'TAR633G1759' => 'tar', 'TAR636G3387' => 'tar', 'THA.LOC104802447' => 'tha', 'THA.LOC104813916' => 'tha', 'THA.LOC104816423' => 'tha', 'THA.LOC104817246' => 'tha', 'THA.LOC104825895' => 'tha', 'Thecc.01G335200' => 'tca', 'Thecc.01G377400' => 'tca', 'Thecc.03G262200' => 'tca', 'Thecc.05G036800' => 'tca', 'Thecc.10G080500' => 'tca', 'Thecc.10G080800' => 'tca', 'Thhalv10001560m.g' => 'esa', 'Thhalv10006120m.g' => 'esa', 'Thhalv10014375m.g' => 'esa', 'Thhalv10021264m.g' => 'esa', 'Thhalv10028856m.g' => 'esa', 'TPR.G1914' => 'tpr', 'TPR.G4757' => 'tpr', 'TPR.G5595' => 'tpr', 'TWI14G0952' => 'twi', 'TWI14G1307' => 'twi', 'TWI38G2143' => 'twi', 'TWI59G0826' => 'twi', 'TWI77G0527' => 'twi', 'TWI81G0150' => 'twi', 'unitig_21.g21018' => 'ugi', 'unitig_26.g9725' => 'ugi', 'unitig_744.g24653' => 'ugi', 'unitig_749.g13778' => 'ugi', 'unitig_899.g15035' => 'ugi', 'vmacro04296' => 'vma', 'vmacro04852' => 'vma', 'vmacro13404' => 'vma', 'vmacro20169' => 'vma', 'vmacro21014' => 'vma', 'VMungo0331G0237' => 'vmu', 'VMungo0331G0706' => 'vmu', 'VMungo0331G1361' => 'vmu', 'VMungo0331G1489' => 'vmu', 'VMungo0540G1037' => 'vmu', 'VMungo0720G2487' => 'vmu', 'VMungo0720G2721' => 'vmu', 'Zm00001eb086860' => 'zma', 'Zm00001eb104760' => 'zma', 'Zm00001eb148220' => 'zma', 'Zm00001eb259030' => 'zma', 'Zm00001eb289590' => 'zma', 'Zm00001eb420150' => 'zma' ), 'gf_id' => 'HOM05D000968', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000968' ), 'data_identifier' => 'HOM05D000968', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000968', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p31690' => 'bna', 'A03p36040' => 'bna', 'A03p53730' => 'bna', 'A04p01410' => 'bna', 'A05p05420' => 'bna', 'A05p39630' => 'bna', 'A05p39640' => 'bna', 'A09p00970' => 'bna', 'A09p53060' => 'bna', 'A10p31890' => 'bna', 'Aa31LG10G15040' => 'aar', 'Aa31LG1G21090' => 'aar', 'Aa31LG1G26900' => 'aar', 'Aa31LG3G1820' => 'aar', 'Aa31LG5G1100' => 'aar', 'Aa31LG6G4740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2265' => 'aag', 'Actinidia07998' => 'ach', 'Actinidia11266' => 'ach', 'Actinidia12682' => 'ach', 'Actinidia26479' => 'ach', 'Actinidia31406' => 'ach', 'Actinidia32437' => 'ach', 'Actinidia38862' => 'ach', 'Ah.05g174230' => 'amhyb', 'Ah.05g179070' => 'amhyb', 'Ah.05g179090' => 'amhyb', 'Ah.12g059950' => 'amhyb', 'AL3G20480' => 'aly', 'AL4G44520' => 'aly', 'AL5G43110' => 'aly', 'AL6G13890' => 'aly', 'AL6G52620' => 'aly', 'AL7G30830' => 'aly', 'Aqoxy1G00899' => 'aox', 'Aqoxy5G04333' => 'aox', 'Aqoxy7G00641' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3IZ0NN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4EF6AW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W9P8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79GA3M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C43NQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFCU6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G95YVJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCHK29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LU1UG8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX91RN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGB4B1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8DA0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9H7JI' => 'arhy', 'AT3G09320' => 'ath', 'AT3G60800' => 'ath', 'AT4G00840' => 'ath', 'AT4G22750' => 'ath', 'AT5G04270' => 'ath', 'ATR0090G003' => 'atr', 'ATR0559G349' => 'atr', 'ATR0680G261' => 'atr', 'ATR0810G048' => 'atr', 'Atru.chr12.831' => 'acertr', 'Atru.chr5.303' => 'acertr', 'Atru.chr5.748' => 'acertr', 'Atru.chr8.1999' => 'acertr', 'Atru.chr9.1436' => 'acertr', 'AUR62004211' => 'cqu', 'AUR62004548' => 'cqu', 'AUR62013637' => 'cqu', 'AUR62022662' => 'cqu', 'AUR62025777' => 'cqu', 'AUR62042386' => 'cqu', 'BcaB01g02310' => 'bca', 'BcaB01g06062' => 'bca', 'BcaB02g08975' => 'bca', 'BcaB02g08980' => 'bca', 'BcaC01g04228' => 'bca', 'BcaC01g06830' => 'bca', 'BcaC02g10186' => 'bca', 'BcaC02g12214' => 'bca', 'BcaC04g24101' => 'bca', 'BcaC05g29520' => 'bca', 'BcaC05g29661' => 'bca', 'BcaC06g32130' => 'bca', 'BcaC06g32131' => 'bca', 'BcaC07g40601' => 'bca', 'BcaC07g42641' => 'bca', 'BcaNung01038' => 'bca', 'BcaNung01676' => 'bca', 'BcaNung02480' => 'bca', 'BcaNung07376' => 'bca', 'BolC3t16146H' => 'bol', 'BolC3t16637H' => 'bol', 'BolC4t22257H' => 'bol', 'BolC4t24728H' => 'bol', 'BolC5t34517H' => 'bol', 'BolC7t45703H' => 'bol', 'BolC8t51166H' => 'bol', 'BolC9t53038H' => 'bol', 'BolC9t60000H' => 'bol', 'BraA01t01345Z' => 'bra', 'BraA01t01346Z' => 'bra', 'BraA01t01348Z' => 'bra', 'BraA03t12347Z' => 'bra', 'BraA03t12775Z' => 'bra', 'BraA03t14439Z' => 'bra', 'BraA04t15860Z' => 'bra', 'BraA05t19511Z' => 'bra', 'BraA05t22746Z' => 'bra', 'BraA09t35767Z' => 'bra', 'BraA09t40732Z' => 'bra', 'BraA10t45233Z' => 'bra', 'C03p38720' => 'bna', 'C03p43680' => 'bna', 'C04p06350' => 'bna', 'C04p31800' => 'bna', 'C05p58680' => 'bna', 'C07p52110' => 'bna', 'C08p35760' => 'bna', 'C09p01050' => 'bna', 'C09p72600' => 'bna', 'CAN.G106.2' => 'can', 'CAN.G1482.1' => 'can', 'CAN.G324.12' => 'can', 'CAN.G388.20' => 'can', 'CAN.G412.7' => 'can', 'CAN.G694.32' => 'can', 'CAN.G92.12' => 'can', 'CANSAT11G2353' => 'cansat', 'CANSAT21G1398' => 'cansat', 'CANSAT56G2456' => 'cansat', 'CANSAT56G3031' => 'cansat', 'CANSAT56G4539' => 'cansat', 'CARHR083680' => 'chi', 'CARHR171190' => 'chi', 'CARHR209010' => 'chi', 'CARHR229680' => 'chi', 'CARHR249490' => 'chi', 'Carub.0003s0844' => 'cru', 'Carub.0005s2755' => 'cru', 'Carub.0006s0322' => 'cru', 'Carub.0006s3586' => 'cru', 'Carub.0007s1855' => 'cru', 'Ca_07808_v3' => 'car', 'Ca_09535_v3' => 'car', 'Ca_10548_v3' => 'car', 'Ca_19913_v3' => 'car', 'Ca_19916_v3' => 'car', 'Ca_19975_v3' => 'car', 'CBR_g22876' => 'cbr', 'CBR_g22879' => 'cbr', 'CBR_g38491' => 'cbr', 'CBR_g54185' => 'cbr', 'CBR_g54190' => 'cbr', 'Cc02_g11020' => 'ccan', 'Cc02_g23920' => 'ccan', 'Cc02_g39860' => 'ccan', 'Cc02_g39870' => 'ccan', 'Cc03_g06760' => 'ccan', 'Cc06_g02450' => 'ccan', 'Cc09_g09450' => 'ccan', 'CDE02G1959' => 'cde', 'CDE04G0600' => 'cde', 'CDE07G1996' => 'cde', 'CDE07G2078' => 'cde', 'CDE11G0611' => 'cde', 'Cfa001683' => 'cfa', 'Cfa001734' => 'cfa', 'Cfa001737' => 'cfa', 'Cfa003751' => 'cfa', 'Cfa012019' => 'cfa', 'Cfa017353' => 'cfa', 'Cfa017732' => 'cfa', 'Cfa022464' => 'cfa', 'Ciclev10012400m.g' => 'ccl', 'Ciclev10021242m.g' => 'ccl', 'Ciclev10021302m.g' => 'ccl', 'Ciclev10021463m.g' => 'ccl', 'Ciclev10032359m.g' => 'ccl', 'CiPaw.01G081000' => 'cil', 'CiPaw.01G262500' => 'cil', 'CiPaw.01G269800' => 'cil', 'CiPaw.02G168400' => 'cil', 'CiPaw.05G119500' => 'cil', 'CiPaw.11G147300' => 'cil', 'ClCG01G003630' => 'cla', 'ClCG05G000510' => 'cla', 'ClCG05G002300' => 'cla', 'ClCG08G007650' => 'cla', 'ClCG10G021250' => 'cla', 'COL.COLO4_06218' => 'col', 'COL.COLO4_12538' => 'col', 'COL.COLO4_14775' => 'col', 'COL.COLO4_23875' => 'col', 'Cpa.g.sc141.16' => 'cpa', 'Cpa.g.sc169.16' => 'cpa', 'Cpa.g.sc244.4' => 'cpa', 'Cpa.g.sc244.5' => 'cpa', 'Cpa.g.sc29.87' => 'cpa', 'Cpa.g.sc53.115' => 'cpa', 'Cre03.g207502' => 'cre', 'Cre06.g277000' => 'cre', 'Cre09.g394050' => 'cre', 'CsaV3_3G007680' => 'csa', 'CsaV3_3G009710' => 'csa', 'CsaV3_3G034790' => 'csa', 'CsaV3_5G003750' => 'csa', 'CsaV3_6G036620' => 'csa', 'CSS0002288' => 'camsi', 'CSS0011250' => 'camsi', 'CSS0021619' => 'camsi', 'CSS0046701' => 'camsi', 'DCAR_006420' => 'dca', 'DCAR_006865' => 'dca', 'DCAR_008558' => 'dca', 'DCAR_028754' => 'dca', 'DCAR_028755' => 'dca', 'Dinv31218' => 'din', 'Dinv32371' => 'din', 'Dinv34250' => 'din', 'Dinv37156' => 'din', 'Dinv43704' => 'din', 'Duzib093G1811' => 'dzi', 'Duzib106G1622' => 'dzi', 'Duzib114G0504' => 'dzi', 'Duzib128G0338' => 'dzi', 'Duzib128G1577' => 'dzi', 'Duzib133G0104' => 'dzi', 'Duzib133G1080' => 'dzi', 'Duzib138G0324' => 'dzi', 'Duzib138G0394' => 'dzi', 'Duzib205G0122' => 'dzi', 'Duzib268G1020' => 'dzi', 'Duzib268G1359' => 'dzi', 'ECA232G3929' => 'eca', 'ECA236G2210' => 'eca', 'ECA236G2287' => 'eca', 'ECA240G4568' => 'eca', 'ECA247G0894' => 'eca', 'EL10Ac1g00200' => 'bvu', 'EL10Ac1g00886' => 'bvu', 'EL10As1g23091' => 'bvu', 'EL10As1g23092' => 'bvu', 'Eucgr.A01284' => 'egr', 'Eucgr.A01285' => 'egr', 'Eucgr.D02456' => 'egr', 'Eucgr.E00018' => 'egr', 'Eucgr.E01439' => 'egr', 'Eucgr.G02859' => 'egr', 'FAN01G0168' => 'fan', 'FAN01G0453' => 'fan', 'FAN01G2761' => 'fan', 'FAN02G1239' => 'fan', 'FAN03G0645' => 'fan', 'FAN03G2707' => 'fan', 'FAN03G2978' => 'fan', 'FAN04G0227' => 'fan', 'FAN06G0091' => 'fan', 'FAN06G1418' => 'fan', 'FAN06G1512' => 'fan', 'FAN06G1986' => 'fan', 'FAN06G2905' => 'fan', 'FAN06G4325' => 'fan', 'FAN08G0033' => 'fan', 'FAN09G0642' => 'fan', 'FAN10G1763' => 'fan', 'FAN10G2026' => 'fan', 'FAN10G2513' => 'fan', 'FAN10G3402' => 'fan', 'FAN10G3564' => 'fan', 'FAN10G3987' => 'fan', 'FAN13G1490' => 'fan', 'FAN14G5857' => 'fan', 'FAN18G1188' => 'fan', 'FvH4_5g00750' => 'fve', 'FvH4_6g13410' => 'fve', 'FvH4_7g11740' => 'fve', 'FvH4_7g17410' => 'fve', 'FvH4_7g18860' => 'fve', 'Glyma.01G099100' => 'gma', 'Glyma.01G142300' => 'gma', 'Glyma.03G025500' => 'gma', 'Glyma.03G069700' => 'gma', 'Glyma.03G260000' => 'gma', 'Glyma.09G269800' => 'gma', 'Glyma.10G208700' => 'gma', 'Glyma.18G220400' => 'gma', 'Glyma.20G182000' => 'gma', 'Gohir.A01G221726' => 'ghi', 'Gohir.A07G134600' => 'ghi', 'Gohir.A07G146000' => 'ghi', 'Gohir.A08G173900' => 'ghi', 'Gohir.A09G194900' => 'ghi', 'Gohir.A10G204100' => 'ghi', 'Gohir.A11G080600' => 'ghi', 'Gohir.A11G327500' => 'ghi', 'Gohir.A12G101800' => 'ghi', 'Gohir.D01G211200' => 'ghi', 'Gohir.D07G139200' => 'ghi', 'Gohir.D07G152100' => 'ghi', 'Gohir.D08G192600' => 'ghi', 'Gohir.D09G189200' => 'ghi', 'Gohir.D10G212000' => 'ghi', 'Gohir.D11G085200' => 'ghi', 'Gohir.D11G346400' => 'ghi', 'Gohir.D12G104800' => 'ghi', 'Gorai.001G151300' => 'gra', 'Gorai.001G174100' => 'gra', 'Gorai.002G257000' => 'gra', 'Gorai.004G202600' => 'gra', 'Gorai.007G090900' => 'gra', 'Gorai.007G376700' => 'gra', 'Gorai.008G114100' => 'gra', 'Gorai.011G237900' => 'gra', 'GSVIVG01005450001' => 'vvi', 'GSVIVG01016232001' => 'vvi', 'GSVIVG01026157001' => 'vvi', 'GSVIVG01027419001' => 'vvi', 'GSVIVG01027631001' => 'vvi', 'GSVIVG01034143001' => 'vvi', 'HanXRQChr03g0093921' => 'han', 'HanXRQChr04g0120001' => 'han', 'HanXRQChr04g0122561' => 'han', 'HanXRQChr09g0246851' => 'han', 'HanXRQChr10g0293311' => 'han', 'HanXRQChr13g0425231' => 'han', 'HanXRQChr16g0532571' => 'han', 'Haze_09050' => 'cav', 'Haze_15715' => 'cav', 'Haze_15716' => 'cav', 'Haze_16803' => 'cav', 'Haze_16850' => 'cav', 'Hma1.2p1_0301F.1_g118655' => 'hma', 'Hma1.2p1_0309F.1_g120590' => 'hma', 'Hma1.2p1_0936F.1_g238900' => 'hma', 'Hma1.2p1_3552F.1_g336740' => 'hma', 'HPP92_003520' => 'vpl', 'HPP92_006628' => 'vpl', 'HPP92_006645' => 'vpl', 'HPP92_014669' => 'vpl', 'HPP92_015077' => 'vpl', 'Hund16742' => 'sun', 'Hund17022' => 'sun', 'Lalb_Chr02g0152131' => 'lal', 'Lalb_Chr05g0225371' => 'lal', 'Lalb_Chr07g0189841' => 'lal', 'Lalb_Chr07g0192961' => 'lal', 'Lalb_Chr12g0208221' => 'lal', 'Lalb_Chr13g0291211' => 'lal', 'Lalb_Chr13g0291781' => 'lal', 'Lalb_Chr18g0044651' => 'lal', 'Lalb_Chr21g0313731' => 'lal', 'Lj1g0022533' => 'lja', 'Lj2A18T50' => 'lonja', 'Lj2A92G93' => 'lonja', 'Lj3A965T73' => 'lonja', 'Lj3g0000673' => 'lja', 'Lj3g0002666' => 'lja', 'Lj4g0016985' => 'lja', 'Lj5g0003625' => 'lja', 'Lj7A529G36' => 'lonja', 'Lj9A569T49' => 'lonja', 'Lj9A604T63' => 'lonja', 'Lsat_1_v5_gn_3_132060' => 'lsa', 'Lsat_1_v5_gn_4_68941' => 'lsa', 'Lsat_1_v5_gn_5_95580' => 'lsa', 'Lsat_1_v5_gn_7_161' => 'lsa', 'Lsat_1_v5_gn_7_7041' => 'lsa', 'Lsat_1_v5_gn_9_33481' => 'lsa', 'Lsat_1_v5_gn_9_68260' => 'lsa', 'Manes.01G073100' => 'mes', 'Manes.01G266300' => 'mes', 'Manes.02G033300' => 'mes', 'Manes.05G017900' => 'mes', 'Manes.05G046100' => 'mes', 'Manes.08G080900' => 'mes', 'Manes.10G049400' => 'mes', 'Mapoly0009s0186' => 'mpo', 'Mapoly0036s0118' => 'mpo', 'Mapoly0101s0046' => 'mpo', 'MBI04_g30218_MAGBIO' => 'mbi', 'MBI04_g35564_MAGBIO' => 'mbi', 'MBI12_g34011_MAGBIO' => 'mbi', 'MBI14_g04655_MAGBIO' => 'mbi', 'MCO07G653' => 'mco', 'MCO10G173' => 'mco', 'MD01G1087100' => 'mdo', 'MD01G1104200' => 'mdo', 'MD02G1205100' => 'mdo', 'MD04G1079200' => 'mdo', 'MD04G1131400' => 'mdo', 'MD07G1121600' => 'mdo', 'MD07G1157300' => 'mdo', 'MD07G1171000' => 'mdo', 'MD12G1144500' => 'mdo', 'Medtr1g094610' => 'mtr', 'Medtr4g021795' => 'mtr', 'Medtr4g023760' => 'mtr', 'Medtr7g118050' => 'mtr', 'MELO3C005582.2' => 'cme', 'MELO3C005989.2' => 'cme', 'MELO3C006192.2' => 'cme', 'MELO3C009248.2' => 'cme', 'MELO3C019817.2' => 'cme', 'Migut.B01625' => 'egut', 'Migut.B01915' => 'egut', 'Migut.F01721' => 'egut', 'Migut.J00314' => 'egut', 'MSTRG.20742' => 'ama', 'MSTRG.8134' => 'ama', 'Nitab4.5_0000096g0010' => 'nta', 'Nitab4.5_0000202g0030' => 'nta', 'Nitab4.5_0000216g0370' => 'nta', 'Nitab4.5_0000457g0230' => 'nta', 'Nitab4.5_0001702g0170' => 'nta', 'Nitab4.5_0003607g0010' => 'nta', 'Nitab4.5_0004917g0020' => 'nta', 'Nitab4.5_0007059g0010' => 'nta', 'Nitab4.5_0007184g0010' => 'nta', 'Nitab4.5_0007346g0020' => 'nta', 'Nn1g00410' => 'nnu', 'Nn1g01252' => 'nnu', 'Nn2g11168' => 'nnu', 'Nn2g13403' => 'nnu', 'Nn2g13760' => 'nnu', 'Nn4g26380' => 'nnu', 'Oeu000806.2' => 'oeu', 'Oeu005788.1' => 'oeu', 'Oeu006900.3' => 'oeu', 'Oeu007797.1' => 'oeu', 'Oeu011932.1' => 'oeu', 'Oeu022739.1' => 'oeu', 'Oeu037918.1' => 'oeu', 'Oeu055490.2' => 'oeu', 'Os01g0844400' => 'osa', 'Os02g0819100' => 'osa', 'Os03g0804300' => 'osa', 'Os05g0458000' => 'osa', 'Os07g0467800' => 'osa', 'Os12g0602200' => 'osa', 'Peaxi162Scf00013g03444' => 'pax', 'Peaxi162Scf00094g01120' => 'pax', 'Peaxi162Scf00191g01211' => 'pax', 'Peaxi162Scf00238g01110' => 'pax', 'Peaxi162Scf00330g00719' => 'pax', 'Peaxi162Scf00627g00018' => 'pax', 'PGR031G2686' => 'pgr', 'PGR042G0809' => 'pgr', 'PGR142G0193' => 'pgr', 'PGSC0003DMG400011066' => 'stu', 'PGSC0003DMG400012041' => 'stu', 'PGSC0003DMG400013678' => 'stu', 'PGSC0003DMG400023477' => 'stu', 'PGSC0003DMG400025956' => 'stu', 'PGSC0003DMG401019151' => 'stu', 'Phvul.006G116400' => 'pvu', 'Phvul.007G097300' => 'pvu', 'Phvul.010G015000' => 'pvu', 'Phvul.010G083900' => 'pvu', 'Potri.001G117100' => 'ptr', 'Potri.002G147300' => 'ptr', 'Potri.003G115600' => 'ptr', 'Potri.006G087400' => 'ptr', 'Potri.010G226100' => 'ptr', 'Potri.014G069200' => 'ptr', 'Potri.014G104000' => 'ptr', 'Potri.016G100200' => 'ptr', 'Pp3c10_20450' => 'ppa', 'Pp3c1_42400' => 'ppa', 'Pp3c3_24390' => 'ppa', 'Pp3c3_2860' => 'ppa', 'PRCOL_00003193' => 'pco', 'Prupe.2G144500' => 'ppe', 'Prupe.2G195700' => 'ppe', 'Prupe.2G209800' => 'ppe', 'Prupe.5G080000' => 'ppe', 'Prupe.6G257900' => 'ppe', 'Psat3g001160' => 'psa', 'Psat6g181880' => 'psa', 'Psat7g233720' => 'psa', 'PSO063G7587' => 'pso', 'PSO339G2145' => 'pso', 'PSO339G3369' => 'pso', 'PSO478G2747' => 'pso', 'PSO513G0140' => 'pso', 'PSO782G1614' => 'pso', 'PSO782G4889' => 'pso', 'PSO782G5485' => 'pso', 'PSO801G0241' => 'pso', 'QL07p048854' => 'qlo', 'QL08p046745' => 'qlo', 'QL08p052606' => 'qlo', 'QL08p053414' => 'qlo', 'QL08p054868' => 'qlo', 'RcHm_v2.0_Chr1g0350251' => 'rch', 'RcHm_v2.0_Chr1g0360851' => 'rch', 'RcHm_v2.0_Chr1g0362791' => 'rch', 'RcHm_v2.0_Chr3g0466281' => 'rch', 'RcHm_v2.0_Chr7g0201481' => 'rch', 'Rhsim01G0148600' => 'rsi', 'Rhsim05G0194400' => 'rsi', 'Rhsim07G0000700' => 'rsi', 'Rhsim07G0000800' => 'rsi', 'Rhsim07G0027900' => 'rsi', 'Rhsim09G0149500' => 'rsi', 'RhsimUnG0186900' => 'rsi', 'Sabra01G0089900' => 'sbr', 'Sabra02G0114700' => 'sbr', 'Sabra02G0116300' => 'sbr', 'Sabra03G0080100' => 'sbr', 'Sabra08G0024300' => 'sbr', 'Sabra10G0174300' => 'sbr', 'Sabra14G0048900' => 'sbr', 'Sabra14G0076500' => 'sbr', 'SalBow5G2513' => 'sbo', 'Sc01g0002300' => 'sci', 'Sc01g0004450' => 'sci', 'Sc06g0001680' => 'sci', 'Sc23g0003580' => 'sci', 'Sed0000913' => 'sed', 'Sed0001655' => 'sed', 'Sed0007745' => 'sed', 'Sed0010951' => 'sed', 'Sed0017599' => 'sed', 'Sed0021405' => 'sed', 'Sed0022810' => 'sed', 'SEGI_07099' => 'sgi', 'SEGI_11931' => 'sgi', 'SEGI_13187' => 'sgi', 'SEGI_29958' => 'sgi', 'SEGI_36351' => 'sgi', 'SGA_v2.0_scaffold126G33770' => 'sas', 'SGA_v2.0_scaffold153G37003' => 'sas', 'SGA_v2.0_scaffold2G01359' => 'sas', 'SGA_v2.0_scaffold5G03064' => 'sas', 'SGA_v2.0_scaffold95G28903' => 'sas', 'SHI12701' => 'shi', 'SHI26410' => 'shi', 'SHI38997' => 'shi', 'SHI53759' => 'shi', 'SHI53886' => 'shi', 'SHI54714' => 'shi', 'SMO011G0041' => 'smo', 'SMO146G0251' => 'smo', 'SMO160G0004' => 'smo', 'SMO174G0057' => 'smo', 'SMO244G0089' => 'smo', 'SMO296G0011' => 'smo', 'Solyc01g091280.3' => 'sly', 'Solyc05g047610.3' => 'sly', 'Solyc05g047640.3' => 'sly', 'Solyc05g055630.3' => 'sly', 'Solyc10g018160.2' => 'sly', 'Solyc10g084820.2' => 'sly', 'Solyc10g086565.2' => 'sly', 'Sopen01g037030' => 'spe', 'Sopen05g027920' => 'spe', 'Sopen05g034070' => 'spe', 'Sopen10g007260' => 'spe', 'Sopen10g034260' => 'spe', 'Sopen10g035950' => 'spe', 'Sp3g07710' => 'spa', 'Sp4g27420' => 'spa', 'Sp5g02450' => 'spa', 'Sp6g01280' => 'spa', 'Sp6g38480' => 'spa', 'Sp7g20780' => 'spa', 'TAR374G1413' => 'tar', 'TAR623G1777' => 'tar', 'TAR629G2370' => 'tar', 'TAR633G1759' => 'tar', 'TAR636G3387' => 'tar', 'THA.LOC104802447' => 'tha', 'THA.LOC104813916' => 'tha', 'THA.LOC104816423' => 'tha', 'THA.LOC104817246' => 'tha', 'THA.LOC104825895' => 'tha', 'Thecc.01G335200' => 'tca', 'Thecc.01G377400' => 'tca', 'Thecc.03G262200' => 'tca', 'Thecc.05G036800' => 'tca', 'Thecc.10G080500' => 'tca', 'Thecc.10G080800' => 'tca', 'Thhalv10001560m.g' => 'esa', 'Thhalv10006120m.g' => 'esa', 'Thhalv10014375m.g' => 'esa', 'Thhalv10021264m.g' => 'esa', 'Thhalv10028856m.g' => 'esa', 'TPR.G1914' => 'tpr', 'TPR.G4757' => 'tpr', 'TPR.G5595' => 'tpr', 'TWI14G0952' => 'twi', 'TWI14G1307' => 'twi', 'TWI38G2143' => 'twi', 'TWI59G0826' => 'twi', 'TWI77G0527' => 'twi', 'TWI81G0150' => 'twi', 'unitig_21.g21018' => 'ugi', 'unitig_26.g9725' => 'ugi', 'unitig_744.g24653' => 'ugi', 'unitig_749.g13778' => 'ugi', 'unitig_899.g15035' => 'ugi', 'vmacro04296' => 'vma', 'vmacro04852' => 'vma', 'vmacro13404' => 'vma', 'vmacro20169' => 'vma', 'vmacro21014' => 'vma', 'VMungo0331G0237' => 'vmu', 'VMungo0331G0706' => 'vmu', 'VMungo0331G1361' => 'vmu', 'VMungo0331G1489' => 'vmu', 'VMungo0540G1037' => 'vmu', 'VMungo0720G2487' => 'vmu', 'VMungo0720G2721' => 'vmu', 'Zm00001eb086860' => 'zma', 'Zm00001eb104760' => 'zma', 'Zm00001eb148220' => 'zma', 'Zm00001eb259030' => 'zma', 'Zm00001eb289590' => 'zma', 'Zm00001eb420150' => 'zma' ) $gf_id = 'HOM05D000968' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000968' ) $data_identifier = 'HOM05D000968' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 19, 'bol' => (int) 9, 'bra' => (int) 12, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 5, 'ccan' => (int) 7, 'cde' => (int) 5, 'cfa' => (int) 8, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 4, 'dca' => (int) 5, 'din' => (int) 5, 'dzi' => (int) 12, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 25, 'fve' => (int) 5, 'gma' => (int) 9, 'ghi' => (int) 18, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 7, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 5, 'sun' => (int) 2, 'lal' => (int) 9, 'lja' => (int) 5, 'lonja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 9, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 2, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 3, 'stu' => (int) 6, 'pvu' => (int) 4, 'ptr' => (int) 8, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 3, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 1, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 5, 'sas' => (int) 5, 'shi' => (int) 6, 'smo' => (int) 6, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 3, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420150' $species_info = array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ) $local_species = 'psa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000968', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p31690' => 'bna', 'A03p36040' => 'bna', 'A03p53730' => 'bna', 'A04p01410' => 'bna', 'A05p05420' => 'bna', 'A05p39630' => 'bna', 'A05p39640' => 'bna', 'A09p00970' => 'bna', 'A09p53060' => 'bna', 'A10p31890' => 'bna', 'Aa31LG10G15040' => 'aar', 'Aa31LG1G21090' => 'aar', 'Aa31LG1G26900' => 'aar', 'Aa31LG3G1820' => 'aar', 'Aa31LG5G1100' => 'aar', 'Aa31LG6G4740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2265' => 'aag', 'Actinidia07998' => 'ach', 'Actinidia11266' => 'ach', 'Actinidia12682' => 'ach', 'Actinidia26479' => 'ach', 'Actinidia31406' => 'ach', 'Actinidia32437' => 'ach', 'Actinidia38862' => 'ach', 'Ah.05g174230' => 'amhyb', 'Ah.05g179070' => 'amhyb', 'Ah.05g179090' => 'amhyb', 'Ah.12g059950' => 'amhyb', 'AL3G20480' => 'aly', 'AL4G44520' => 'aly', 'AL5G43110' => 'aly', 'AL6G13890' => 'aly', 'AL6G52620' => 'aly', 'AL7G30830' => 'aly', 'Aqoxy1G00899' => 'aox', 'Aqoxy5G04333' => 'aox', 'Aqoxy7G00641' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3IZ0NN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4EF6AW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W9P8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79GA3M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C43NQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFCU6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G95YVJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCHK29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LU1UG8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX91RN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGB4B1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8DA0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9H7JI' => 'arhy', 'AT3G09320' => 'ath', 'AT3G60800' => 'ath', 'AT4G00840' => 'ath', 'AT4G22750' => 'ath', 'AT5G04270' => 'ath', 'ATR0090G003' => 'atr', 'ATR0559G349' => 'atr', 'ATR0680G261' => 'atr', 'ATR0810G048' => 'atr', 'Atru.chr12.831' => 'acertr', 'Atru.chr5.303' => 'acertr', 'Atru.chr5.748' => 'acertr', 'Atru.chr8.1999' => 'acertr', 'Atru.chr9.1436' => 'acertr', 'AUR62004211' => 'cqu', 'AUR62004548' => 'cqu', 'AUR62013637' => 'cqu', 'AUR62022662' => 'cqu', 'AUR62025777' => 'cqu', 'AUR62042386' => 'cqu', 'BcaB01g02310' => 'bca', 'BcaB01g06062' => 'bca', 'BcaB02g08975' => 'bca', 'BcaB02g08980' => 'bca', 'BcaC01g04228' => 'bca', 'BcaC01g06830' => 'bca', 'BcaC02g10186' => 'bca', 'BcaC02g12214' => 'bca', 'BcaC04g24101' => 'bca', 'BcaC05g29520' => 'bca', 'BcaC05g29661' => 'bca', 'BcaC06g32130' => 'bca', 'BcaC06g32131' => 'bca', 'BcaC07g40601' => 'bca', 'BcaC07g42641' => 'bca', 'BcaNung01038' => 'bca', 'BcaNung01676' => 'bca', 'BcaNung02480' => 'bca', 'BcaNung07376' => 'bca', 'BolC3t16146H' => 'bol', 'BolC3t16637H' => 'bol', 'BolC4t22257H' => 'bol', 'BolC4t24728H' => 'bol', 'BolC5t34517H' => 'bol', 'BolC7t45703H' => 'bol', 'BolC8t51166H' => 'bol', 'BolC9t53038H' => 'bol', 'BolC9t60000H' => 'bol', 'BraA01t01345Z' => 'bra', 'BraA01t01346Z' => 'bra', 'BraA01t01348Z' => 'bra', 'BraA03t12347Z' => 'bra', 'BraA03t12775Z' => 'bra', 'BraA03t14439Z' => 'bra', 'BraA04t15860Z' => 'bra', 'BraA05t19511Z' => 'bra', 'BraA05t22746Z' => 'bra', 'BraA09t35767Z' => 'bra', 'BraA09t40732Z' => 'bra', 'BraA10t45233Z' => 'bra', 'C03p38720' => 'bna', 'C03p43680' => 'bna', 'C04p06350' => 'bna', 'C04p31800' => 'bna', 'C05p58680' => 'bna', 'C07p52110' => 'bna', 'C08p35760' => 'bna', 'C09p01050' => 'bna', 'C09p72600' => 'bna', 'CAN.G106.2' => 'can', 'CAN.G1482.1' => 'can', 'CAN.G324.12' => 'can', 'CAN.G388.20' => 'can', 'CAN.G412.7' => 'can', 'CAN.G694.32' => 'can', 'CAN.G92.12' => 'can', 'CANSAT11G2353' => 'cansat', 'CANSAT21G1398' => 'cansat', 'CANSAT56G2456' => 'cansat', 'CANSAT56G3031' => 'cansat', 'CANSAT56G4539' => 'cansat', 'CARHR083680' => 'chi', 'CARHR171190' => 'chi', 'CARHR209010' => 'chi', 'CARHR229680' => 'chi', 'CARHR249490' => 'chi', 'Carub.0003s0844' => 'cru', 'Carub.0005s2755' => 'cru', 'Carub.0006s0322' => 'cru', 'Carub.0006s3586' => 'cru', 'Carub.0007s1855' => 'cru', 'Ca_07808_v3' => 'car', 'Ca_09535_v3' => 'car', 'Ca_10548_v3' => 'car', 'Ca_19913_v3' => 'car', 'Ca_19916_v3' => 'car', 'Ca_19975_v3' => 'car', 'CBR_g22876' => 'cbr', 'CBR_g22879' => 'cbr', 'CBR_g38491' => 'cbr', 'CBR_g54185' => 'cbr', 'CBR_g54190' => 'cbr', 'Cc02_g11020' => 'ccan', 'Cc02_g23920' => 'ccan', 'Cc02_g39860' => 'ccan', 'Cc02_g39870' => 'ccan', 'Cc03_g06760' => 'ccan', 'Cc06_g02450' => 'ccan', 'Cc09_g09450' => 'ccan', 'CDE02G1959' => 'cde', 'CDE04G0600' => 'cde', 'CDE07G1996' => 'cde', 'CDE07G2078' => 'cde', 'CDE11G0611' => 'cde', 'Cfa001683' => 'cfa', 'Cfa001734' => 'cfa', 'Cfa001737' => 'cfa', 'Cfa003751' => 'cfa', 'Cfa012019' => 'cfa', 'Cfa017353' => 'cfa', 'Cfa017732' => 'cfa', 'Cfa022464' => 'cfa', 'Ciclev10012400m.g' => 'ccl', 'Ciclev10021242m.g' => 'ccl', 'Ciclev10021302m.g' => 'ccl', 'Ciclev10021463m.g' => 'ccl', 'Ciclev10032359m.g' => 'ccl', 'CiPaw.01G081000' => 'cil', 'CiPaw.01G262500' => 'cil', 'CiPaw.01G269800' => 'cil', 'CiPaw.02G168400' => 'cil', 'CiPaw.05G119500' => 'cil', 'CiPaw.11G147300' => 'cil', 'ClCG01G003630' => 'cla', 'ClCG05G000510' => 'cla', 'ClCG05G002300' => 'cla', 'ClCG08G007650' => 'cla', 'ClCG10G021250' => 'cla', 'COL.COLO4_06218' => 'col', 'COL.COLO4_12538' => 'col', 'COL.COLO4_14775' => 'col', 'COL.COLO4_23875' => 'col', 'Cpa.g.sc141.16' => 'cpa', 'Cpa.g.sc169.16' => 'cpa', 'Cpa.g.sc244.4' => 'cpa', 'Cpa.g.sc244.5' => 'cpa', 'Cpa.g.sc29.87' => 'cpa', 'Cpa.g.sc53.115' => 'cpa', 'Cre03.g207502' => 'cre', 'Cre06.g277000' => 'cre', 'Cre09.g394050' => 'cre', 'CsaV3_3G007680' => 'csa', 'CsaV3_3G009710' => 'csa', 'CsaV3_3G034790' => 'csa', 'CsaV3_5G003750' => 'csa', 'CsaV3_6G036620' => 'csa', 'CSS0002288' => 'camsi', 'CSS0011250' => 'camsi', 'CSS0021619' => 'camsi', 'CSS0046701' => 'camsi', 'DCAR_006420' => 'dca', 'DCAR_006865' => 'dca', 'DCAR_008558' => 'dca', 'DCAR_028754' => 'dca', 'DCAR_028755' => 'dca', 'Dinv31218' => 'din', 'Dinv32371' => 'din', 'Dinv34250' => 'din', 'Dinv37156' => 'din', 'Dinv43704' => 'din', 'Duzib093G1811' => 'dzi', 'Duzib106G1622' => 'dzi', 'Duzib114G0504' => 'dzi', 'Duzib128G0338' => 'dzi', 'Duzib128G1577' => 'dzi', 'Duzib133G0104' => 'dzi', 'Duzib133G1080' => 'dzi', 'Duzib138G0324' => 'dzi', 'Duzib138G0394' => 'dzi', 'Duzib205G0122' => 'dzi', 'Duzib268G1020' => 'dzi', 'Duzib268G1359' => 'dzi', 'ECA232G3929' => 'eca', 'ECA236G2210' => 'eca', 'ECA236G2287' => 'eca', 'ECA240G4568' => 'eca', 'ECA247G0894' => 'eca', 'EL10Ac1g00200' => 'bvu', 'EL10Ac1g00886' => 'bvu', 'EL10As1g23091' => 'bvu', 'EL10As1g23092' => 'bvu', 'Eucgr.A01284' => 'egr', 'Eucgr.A01285' => 'egr', 'Eucgr.D02456' => 'egr', 'Eucgr.E00018' => 'egr', 'Eucgr.E01439' => 'egr', 'Eucgr.G02859' => 'egr', 'FAN01G0168' => 'fan', 'FAN01G0453' => 'fan', 'FAN01G2761' => 'fan', 'FAN02G1239' => 'fan', 'FAN03G0645' => 'fan', 'FAN03G2707' => 'fan', 'FAN03G2978' => 'fan', 'FAN04G0227' => 'fan', 'FAN06G0091' => 'fan', 'FAN06G1418' => 'fan', 'FAN06G1512' => 'fan', 'FAN06G1986' => 'fan', 'FAN06G2905' => 'fan', 'FAN06G4325' => 'fan', 'FAN08G0033' => 'fan', 'FAN09G0642' => 'fan', 'FAN10G1763' => 'fan', 'FAN10G2026' => 'fan', 'FAN10G2513' => 'fan', 'FAN10G3402' => 'fan', 'FAN10G3564' => 'fan', 'FAN10G3987' => 'fan', 'FAN13G1490' => 'fan', 'FAN14G5857' => 'fan', 'FAN18G1188' => 'fan', 'FvH4_5g00750' => 'fve', 'FvH4_6g13410' => 'fve', 'FvH4_7g11740' => 'fve', 'FvH4_7g17410' => 'fve', 'FvH4_7g18860' => 'fve', 'Glyma.01G099100' => 'gma', 'Glyma.01G142300' => 'gma', 'Glyma.03G025500' => 'gma', 'Glyma.03G069700' => 'gma', 'Glyma.03G260000' => 'gma', 'Glyma.09G269800' => 'gma', 'Glyma.10G208700' => 'gma', 'Glyma.18G220400' => 'gma', 'Glyma.20G182000' => 'gma', 'Gohir.A01G221726' => 'ghi', 'Gohir.A07G134600' => 'ghi', 'Gohir.A07G146000' => 'ghi', 'Gohir.A08G173900' => 'ghi', 'Gohir.A09G194900' => 'ghi', 'Gohir.A10G204100' => 'ghi', 'Gohir.A11G080600' => 'ghi', 'Gohir.A11G327500' => 'ghi', 'Gohir.A12G101800' => 'ghi', 'Gohir.D01G211200' => 'ghi', 'Gohir.D07G139200' => 'ghi', 'Gohir.D07G152100' => 'ghi', 'Gohir.D08G192600' => 'ghi', 'Gohir.D09G189200' => 'ghi', 'Gohir.D10G212000' => 'ghi', 'Gohir.D11G085200' => 'ghi', 'Gohir.D11G346400' => 'ghi', 'Gohir.D12G104800' => 'ghi', 'Gorai.001G151300' => 'gra', 'Gorai.001G174100' => 'gra', 'Gorai.002G257000' => 'gra', 'Gorai.004G202600' => 'gra', 'Gorai.007G090900' => 'gra', 'Gorai.007G376700' => 'gra', 'Gorai.008G114100' => 'gra', 'Gorai.011G237900' => 'gra', 'GSVIVG01005450001' => 'vvi', 'GSVIVG01016232001' => 'vvi', 'GSVIVG01026157001' => 'vvi', 'GSVIVG01027419001' => 'vvi', 'GSVIVG01027631001' => 'vvi', 'GSVIVG01034143001' => 'vvi', 'HanXRQChr03g0093921' => 'han', 'HanXRQChr04g0120001' => 'han', 'HanXRQChr04g0122561' => 'han', 'HanXRQChr09g0246851' => 'han', 'HanXRQChr10g0293311' => 'han', 'HanXRQChr13g0425231' => 'han', 'HanXRQChr16g0532571' => 'han', 'Haze_09050' => 'cav', 'Haze_15715' => 'cav', 'Haze_15716' => 'cav', 'Haze_16803' => 'cav', 'Haze_16850' => 'cav', 'Hma1.2p1_0301F.1_g118655' => 'hma', 'Hma1.2p1_0309F.1_g120590' => 'hma', 'Hma1.2p1_0936F.1_g238900' => 'hma', 'Hma1.2p1_3552F.1_g336740' => 'hma', 'HPP92_003520' => 'vpl', 'HPP92_006628' => 'vpl', 'HPP92_006645' => 'vpl', 'HPP92_014669' => 'vpl', 'HPP92_015077' => 'vpl', 'Hund16742' => 'sun', 'Hund17022' => 'sun', 'Lalb_Chr02g0152131' => 'lal', 'Lalb_Chr05g0225371' => 'lal', 'Lalb_Chr07g0189841' => 'lal', 'Lalb_Chr07g0192961' => 'lal', 'Lalb_Chr12g0208221' => 'lal', 'Lalb_Chr13g0291211' => 'lal', 'Lalb_Chr13g0291781' => 'lal', 'Lalb_Chr18g0044651' => 'lal', 'Lalb_Chr21g0313731' => 'lal', 'Lj1g0022533' => 'lja', 'Lj2A18T50' => 'lonja', 'Lj2A92G93' => 'lonja', 'Lj3A965T73' => 'lonja', 'Lj3g0000673' => 'lja', 'Lj3g0002666' => 'lja', 'Lj4g0016985' => 'lja', 'Lj5g0003625' => 'lja', 'Lj7A529G36' => 'lonja', 'Lj9A569T49' => 'lonja', 'Lj9A604T63' => 'lonja', 'Lsat_1_v5_gn_3_132060' => 'lsa', 'Lsat_1_v5_gn_4_68941' => 'lsa', 'Lsat_1_v5_gn_5_95580' => 'lsa', 'Lsat_1_v5_gn_7_161' => 'lsa', 'Lsat_1_v5_gn_7_7041' => 'lsa', 'Lsat_1_v5_gn_9_33481' => 'lsa', 'Lsat_1_v5_gn_9_68260' => 'lsa', 'Manes.01G073100' => 'mes', 'Manes.01G266300' => 'mes', 'Manes.02G033300' => 'mes', 'Manes.05G017900' => 'mes', 'Manes.05G046100' => 'mes', 'Manes.08G080900' => 'mes', 'Manes.10G049400' => 'mes', 'Mapoly0009s0186' => 'mpo', 'Mapoly0036s0118' => 'mpo', 'Mapoly0101s0046' => 'mpo', 'MBI04_g30218_MAGBIO' => 'mbi', 'MBI04_g35564_MAGBIO' => 'mbi', 'MBI12_g34011_MAGBIO' => 'mbi', 'MBI14_g04655_MAGBIO' => 'mbi', 'MCO07G653' => 'mco', 'MCO10G173' => 'mco', 'MD01G1087100' => 'mdo', 'MD01G1104200' => 'mdo', 'MD02G1205100' => 'mdo', 'MD04G1079200' => 'mdo', 'MD04G1131400' => 'mdo', 'MD07G1121600' => 'mdo', 'MD07G1157300' => 'mdo', 'MD07G1171000' => 'mdo', 'MD12G1144500' => 'mdo', 'Medtr1g094610' => 'mtr', 'Medtr4g021795' => 'mtr', 'Medtr4g023760' => 'mtr', 'Medtr7g118050' => 'mtr', 'MELO3C005582.2' => 'cme', 'MELO3C005989.2' => 'cme', 'MELO3C006192.2' => 'cme', 'MELO3C009248.2' => 'cme', 'MELO3C019817.2' => 'cme', 'Migut.B01625' => 'egut', 'Migut.B01915' => 'egut', 'Migut.F01721' => 'egut', 'Migut.J00314' => 'egut', 'MSTRG.20742' => 'ama', 'MSTRG.8134' => 'ama', 'Nitab4.5_0000096g0010' => 'nta', 'Nitab4.5_0000202g0030' => 'nta', 'Nitab4.5_0000216g0370' => 'nta', 'Nitab4.5_0000457g0230' => 'nta', 'Nitab4.5_0001702g0170' => 'nta', 'Nitab4.5_0003607g0010' => 'nta', 'Nitab4.5_0004917g0020' => 'nta', 'Nitab4.5_0007059g0010' => 'nta', 'Nitab4.5_0007184g0010' => 'nta', 'Nitab4.5_0007346g0020' => 'nta', 'Nn1g00410' => 'nnu', 'Nn1g01252' => 'nnu', 'Nn2g11168' => 'nnu', 'Nn2g13403' => 'nnu', 'Nn2g13760' => 'nnu', 'Nn4g26380' => 'nnu', 'Oeu000806.2' => 'oeu', 'Oeu005788.1' => 'oeu', 'Oeu006900.3' => 'oeu', 'Oeu007797.1' => 'oeu', 'Oeu011932.1' => 'oeu', 'Oeu022739.1' => 'oeu', 'Oeu037918.1' => 'oeu', 'Oeu055490.2' => 'oeu', 'Os01g0844400' => 'osa', 'Os02g0819100' => 'osa', 'Os03g0804300' => 'osa', 'Os05g0458000' => 'osa', 'Os07g0467800' => 'osa', 'Os12g0602200' => 'osa', 'Peaxi162Scf00013g03444' => 'pax', 'Peaxi162Scf00094g01120' => 'pax', 'Peaxi162Scf00191g01211' => 'pax', 'Peaxi162Scf00238g01110' => 'pax', 'Peaxi162Scf00330g00719' => 'pax', 'Peaxi162Scf00627g00018' => 'pax', 'PGR031G2686' => 'pgr', 'PGR042G0809' => 'pgr', 'PGR142G0193' => 'pgr', 'PGSC0003DMG400011066' => 'stu', 'PGSC0003DMG400012041' => 'stu', 'PGSC0003DMG400013678' => 'stu', 'PGSC0003DMG400023477' => 'stu', 'PGSC0003DMG400025956' => 'stu', 'PGSC0003DMG401019151' => 'stu', 'Phvul.006G116400' => 'pvu', 'Phvul.007G097300' => 'pvu', 'Phvul.010G015000' => 'pvu', 'Phvul.010G083900' => 'pvu', 'Potri.001G117100' => 'ptr', 'Potri.002G147300' => 'ptr', 'Potri.003G115600' => 'ptr', 'Potri.006G087400' => 'ptr', 'Potri.010G226100' => 'ptr', 'Potri.014G069200' => 'ptr', 'Potri.014G104000' => 'ptr', 'Potri.016G100200' => 'ptr', 'Pp3c10_20450' => 'ppa', 'Pp3c1_42400' => 'ppa', 'Pp3c3_24390' => 'ppa', 'Pp3c3_2860' => 'ppa', 'PRCOL_00003193' => 'pco', 'Prupe.2G144500' => 'ppe', 'Prupe.2G195700' => 'ppe', 'Prupe.2G209800' => 'ppe', 'Prupe.5G080000' => 'ppe', 'Prupe.6G257900' => 'ppe', 'Psat3g001160' => 'psa', 'Psat6g181880' => 'psa', 'Psat7g233720' => 'psa', 'PSO063G7587' => 'pso', 'PSO339G2145' => 'pso', 'PSO339G3369' => 'pso', 'PSO478G2747' => 'pso', 'PSO513G0140' => 'pso', 'PSO782G1614' => 'pso', 'PSO782G4889' => 'pso', 'PSO782G5485' => 'pso', 'PSO801G0241' => 'pso', 'QL07p048854' => 'qlo', 'QL08p046745' => 'qlo', 'QL08p052606' => 'qlo', 'QL08p053414' => 'qlo', 'QL08p054868' => 'qlo', 'RcHm_v2.0_Chr1g0350251' => 'rch', 'RcHm_v2.0_Chr1g0360851' => 'rch', 'RcHm_v2.0_Chr1g0362791' => 'rch', 'RcHm_v2.0_Chr3g0466281' => 'rch', 'RcHm_v2.0_Chr7g0201481' => 'rch', 'Rhsim01G0148600' => 'rsi', 'Rhsim05G0194400' => 'rsi', 'Rhsim07G0000700' => 'rsi', 'Rhsim07G0000800' => 'rsi', 'Rhsim07G0027900' => 'rsi', 'Rhsim09G0149500' => 'rsi', 'RhsimUnG0186900' => 'rsi', 'Sabra01G0089900' => 'sbr', 'Sabra02G0114700' => 'sbr', 'Sabra02G0116300' => 'sbr', 'Sabra03G0080100' => 'sbr', 'Sabra08G0024300' => 'sbr', 'Sabra10G0174300' => 'sbr', 'Sabra14G0048900' => 'sbr', 'Sabra14G0076500' => 'sbr', 'SalBow5G2513' => 'sbo', 'Sc01g0002300' => 'sci', 'Sc01g0004450' => 'sci', 'Sc06g0001680' => 'sci', 'Sc23g0003580' => 'sci', 'Sed0000913' => 'sed', 'Sed0001655' => 'sed', 'Sed0007745' => 'sed', 'Sed0010951' => 'sed', 'Sed0017599' => 'sed', 'Sed0021405' => 'sed', 'Sed0022810' => 'sed', 'SEGI_07099' => 'sgi', 'SEGI_11931' => 'sgi', 'SEGI_13187' => 'sgi', 'SEGI_29958' => 'sgi', 'SEGI_36351' => 'sgi', 'SGA_v2.0_scaffold126G33770' => 'sas', 'SGA_v2.0_scaffold153G37003' => 'sas', 'SGA_v2.0_scaffold2G01359' => 'sas', 'SGA_v2.0_scaffold5G03064' => 'sas', 'SGA_v2.0_scaffold95G28903' => 'sas', 'SHI12701' => 'shi', 'SHI26410' => 'shi', 'SHI38997' => 'shi', 'SHI53759' => 'shi', 'SHI53886' => 'shi', 'SHI54714' => 'shi', 'SMO011G0041' => 'smo', 'SMO146G0251' => 'smo', 'SMO160G0004' => 'smo', 'SMO174G0057' => 'smo', 'SMO244G0089' => 'smo', 'SMO296G0011' => 'smo', 'Solyc01g091280.3' => 'sly', 'Solyc05g047610.3' => 'sly', 'Solyc05g047640.3' => 'sly', 'Solyc05g055630.3' => 'sly', 'Solyc10g018160.2' => 'sly', 'Solyc10g084820.2' => 'sly', 'Solyc10g086565.2' => 'sly', 'Sopen01g037030' => 'spe', 'Sopen05g027920' => 'spe', 'Sopen05g034070' => 'spe', 'Sopen10g007260' => 'spe', 'Sopen10g034260' => 'spe', 'Sopen10g035950' => 'spe', 'Sp3g07710' => 'spa', 'Sp4g27420' => 'spa', 'Sp5g02450' => 'spa', 'Sp6g01280' => 'spa', 'Sp6g38480' => 'spa', 'Sp7g20780' => 'spa', 'TAR374G1413' => 'tar', 'TAR623G1777' => 'tar', 'TAR629G2370' => 'tar', 'TAR633G1759' => 'tar', 'TAR636G3387' => 'tar', 'THA.LOC104802447' => 'tha', 'THA.LOC104813916' => 'tha', 'THA.LOC104816423' => 'tha', 'THA.LOC104817246' => 'tha', 'THA.LOC104825895' => 'tha', 'Thecc.01G335200' => 'tca', 'Thecc.01G377400' => 'tca', 'Thecc.03G262200' => 'tca', 'Thecc.05G036800' => 'tca', 'Thecc.10G080500' => 'tca', 'Thecc.10G080800' => 'tca', 'Thhalv10001560m.g' => 'esa', 'Thhalv10006120m.g' => 'esa', 'Thhalv10014375m.g' => 'esa', 'Thhalv10021264m.g' => 'esa', 'Thhalv10028856m.g' => 'esa', 'TPR.G1914' => 'tpr', 'TPR.G4757' => 'tpr', 'TPR.G5595' => 'tpr', 'TWI14G0952' => 'twi', 'TWI14G1307' => 'twi', 'TWI38G2143' => 'twi', 'TWI59G0826' => 'twi', 'TWI77G0527' => 'twi', 'TWI81G0150' => 'twi', 'unitig_21.g21018' => 'ugi', 'unitig_26.g9725' => 'ugi', 'unitig_744.g24653' => 'ugi', 'unitig_749.g13778' => 'ugi', 'unitig_899.g15035' => 'ugi', 'vmacro04296' => 'vma', 'vmacro04852' => 'vma', 'vmacro13404' => 'vma', 'vmacro20169' => 'vma', 'vmacro21014' => 'vma', 'VMungo0331G0237' => 'vmu', 'VMungo0331G0706' => 'vmu', 'VMungo0331G1361' => 'vmu', 'VMungo0331G1489' => 'vmu', 'VMungo0540G1037' => 'vmu', 'VMungo0720G2487' => 'vmu', 'VMungo0720G2721' => 'vmu', 'Zm00001eb086860' => 'zma', 'Zm00001eb104760' => 'zma', 'Zm00001eb148220' => 'zma', 'Zm00001eb259030' => 'zma', 'Zm00001eb289590' => 'zma', 'Zm00001eb420150' => 'zma' ), 'gf_id' => 'HOM05D000968', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000968' ), 'data_identifier' => 'HOM05D000968', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000968', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p31690' => 'bna', 'A03p36040' => 'bna', 'A03p53730' => 'bna', 'A04p01410' => 'bna', 'A05p05420' => 'bna', 'A05p39630' => 'bna', 'A05p39640' => 'bna', 'A09p00970' => 'bna', 'A09p53060' => 'bna', 'A10p31890' => 'bna', 'Aa31LG10G15040' => 'aar', 'Aa31LG1G21090' => 'aar', 'Aa31LG1G26900' => 'aar', 'Aa31LG3G1820' => 'aar', 'Aa31LG5G1100' => 'aar', 'Aa31LG6G4740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2265' => 'aag', 'Actinidia07998' => 'ach', 'Actinidia11266' => 'ach', 'Actinidia12682' => 'ach', 'Actinidia26479' => 'ach', 'Actinidia31406' => 'ach', 'Actinidia32437' => 'ach', 'Actinidia38862' => 'ach', 'Ah.05g174230' => 'amhyb', 'Ah.05g179070' => 'amhyb', 'Ah.05g179090' => 'amhyb', 'Ah.12g059950' => 'amhyb', 'AL3G20480' => 'aly', 'AL4G44520' => 'aly', 'AL5G43110' => 'aly', 'AL6G13890' => 'aly', 'AL6G52620' => 'aly', 'AL7G30830' => 'aly', 'Aqoxy1G00899' => 'aox', 'Aqoxy5G04333' => 'aox', 'Aqoxy7G00641' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3IZ0NN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4EF6AW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W9P8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79GA3M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C43NQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFCU6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G95YVJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCHK29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LU1UG8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX91RN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGB4B1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8DA0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9H7JI' => 'arhy', 'AT3G09320' => 'ath', 'AT3G60800' => 'ath', 'AT4G00840' => 'ath', 'AT4G22750' => 'ath', 'AT5G04270' => 'ath', 'ATR0090G003' => 'atr', 'ATR0559G349' => 'atr', 'ATR0680G261' => 'atr', 'ATR0810G048' => 'atr', 'Atru.chr12.831' => 'acertr', 'Atru.chr5.303' => 'acertr', 'Atru.chr5.748' => 'acertr', 'Atru.chr8.1999' => 'acertr', 'Atru.chr9.1436' => 'acertr', 'AUR62004211' => 'cqu', 'AUR62004548' => 'cqu', 'AUR62013637' => 'cqu', 'AUR62022662' => 'cqu', 'AUR62025777' => 'cqu', 'AUR62042386' => 'cqu', 'BcaB01g02310' => 'bca', 'BcaB01g06062' => 'bca', 'BcaB02g08975' => 'bca', 'BcaB02g08980' => 'bca', 'BcaC01g04228' => 'bca', 'BcaC01g06830' => 'bca', 'BcaC02g10186' => 'bca', 'BcaC02g12214' => 'bca', 'BcaC04g24101' => 'bca', 'BcaC05g29520' => 'bca', 'BcaC05g29661' => 'bca', 'BcaC06g32130' => 'bca', 'BcaC06g32131' => 'bca', 'BcaC07g40601' => 'bca', 'BcaC07g42641' => 'bca', 'BcaNung01038' => 'bca', 'BcaNung01676' => 'bca', 'BcaNung02480' => 'bca', 'BcaNung07376' => 'bca', 'BolC3t16146H' => 'bol', 'BolC3t16637H' => 'bol', 'BolC4t22257H' => 'bol', 'BolC4t24728H' => 'bol', 'BolC5t34517H' => 'bol', 'BolC7t45703H' => 'bol', 'BolC8t51166H' => 'bol', 'BolC9t53038H' => 'bol', 'BolC9t60000H' => 'bol', 'BraA01t01345Z' => 'bra', 'BraA01t01346Z' => 'bra', 'BraA01t01348Z' => 'bra', 'BraA03t12347Z' => 'bra', 'BraA03t12775Z' => 'bra', 'BraA03t14439Z' => 'bra', 'BraA04t15860Z' => 'bra', 'BraA05t19511Z' => 'bra', 'BraA05t22746Z' => 'bra', 'BraA09t35767Z' => 'bra', 'BraA09t40732Z' => 'bra', 'BraA10t45233Z' => 'bra', 'C03p38720' => 'bna', 'C03p43680' => 'bna', 'C04p06350' => 'bna', 'C04p31800' => 'bna', 'C05p58680' => 'bna', 'C07p52110' => 'bna', 'C08p35760' => 'bna', 'C09p01050' => 'bna', 'C09p72600' => 'bna', 'CAN.G106.2' => 'can', 'CAN.G1482.1' => 'can', 'CAN.G324.12' => 'can', 'CAN.G388.20' => 'can', 'CAN.G412.7' => 'can', 'CAN.G694.32' => 'can', 'CAN.G92.12' => 'can', 'CANSAT11G2353' => 'cansat', 'CANSAT21G1398' => 'cansat', 'CANSAT56G2456' => 'cansat', 'CANSAT56G3031' => 'cansat', 'CANSAT56G4539' => 'cansat', 'CARHR083680' => 'chi', 'CARHR171190' => 'chi', 'CARHR209010' => 'chi', 'CARHR229680' => 'chi', 'CARHR249490' => 'chi', 'Carub.0003s0844' => 'cru', 'Carub.0005s2755' => 'cru', 'Carub.0006s0322' => 'cru', 'Carub.0006s3586' => 'cru', 'Carub.0007s1855' => 'cru', 'Ca_07808_v3' => 'car', 'Ca_09535_v3' => 'car', 'Ca_10548_v3' => 'car', 'Ca_19913_v3' => 'car', 'Ca_19916_v3' => 'car', 'Ca_19975_v3' => 'car', 'CBR_g22876' => 'cbr', 'CBR_g22879' => 'cbr', 'CBR_g38491' => 'cbr', 'CBR_g54185' => 'cbr', 'CBR_g54190' => 'cbr', 'Cc02_g11020' => 'ccan', 'Cc02_g23920' => 'ccan', 'Cc02_g39860' => 'ccan', 'Cc02_g39870' => 'ccan', 'Cc03_g06760' => 'ccan', 'Cc06_g02450' => 'ccan', 'Cc09_g09450' => 'ccan', 'CDE02G1959' => 'cde', 'CDE04G0600' => 'cde', 'CDE07G1996' => 'cde', 'CDE07G2078' => 'cde', 'CDE11G0611' => 'cde', 'Cfa001683' => 'cfa', 'Cfa001734' => 'cfa', 'Cfa001737' => 'cfa', 'Cfa003751' => 'cfa', 'Cfa012019' => 'cfa', 'Cfa017353' => 'cfa', 'Cfa017732' => 'cfa', 'Cfa022464' => 'cfa', 'Ciclev10012400m.g' => 'ccl', 'Ciclev10021242m.g' => 'ccl', 'Ciclev10021302m.g' => 'ccl', 'Ciclev10021463m.g' => 'ccl', 'Ciclev10032359m.g' => 'ccl', 'CiPaw.01G081000' => 'cil', 'CiPaw.01G262500' => 'cil', 'CiPaw.01G269800' => 'cil', 'CiPaw.02G168400' => 'cil', 'CiPaw.05G119500' => 'cil', 'CiPaw.11G147300' => 'cil', 'ClCG01G003630' => 'cla', 'ClCG05G000510' => 'cla', 'ClCG05G002300' => 'cla', 'ClCG08G007650' => 'cla', 'ClCG10G021250' => 'cla', 'COL.COLO4_06218' => 'col', 'COL.COLO4_12538' => 'col', 'COL.COLO4_14775' => 'col', 'COL.COLO4_23875' => 'col', 'Cpa.g.sc141.16' => 'cpa', 'Cpa.g.sc169.16' => 'cpa', 'Cpa.g.sc244.4' => 'cpa', 'Cpa.g.sc244.5' => 'cpa', 'Cpa.g.sc29.87' => 'cpa', 'Cpa.g.sc53.115' => 'cpa', 'Cre03.g207502' => 'cre', 'Cre06.g277000' => 'cre', 'Cre09.g394050' => 'cre', 'CsaV3_3G007680' => 'csa', 'CsaV3_3G009710' => 'csa', 'CsaV3_3G034790' => 'csa', 'CsaV3_5G003750' => 'csa', 'CsaV3_6G036620' => 'csa', 'CSS0002288' => 'camsi', 'CSS0011250' => 'camsi', 'CSS0021619' => 'camsi', 'CSS0046701' => 'camsi', 'DCAR_006420' => 'dca', 'DCAR_006865' => 'dca', 'DCAR_008558' => 'dca', 'DCAR_028754' => 'dca', 'DCAR_028755' => 'dca', 'Dinv31218' => 'din', 'Dinv32371' => 'din', 'Dinv34250' => 'din', 'Dinv37156' => 'din', 'Dinv43704' => 'din', 'Duzib093G1811' => 'dzi', 'Duzib106G1622' => 'dzi', 'Duzib114G0504' => 'dzi', 'Duzib128G0338' => 'dzi', 'Duzib128G1577' => 'dzi', 'Duzib133G0104' => 'dzi', 'Duzib133G1080' => 'dzi', 'Duzib138G0324' => 'dzi', 'Duzib138G0394' => 'dzi', 'Duzib205G0122' => 'dzi', 'Duzib268G1020' => 'dzi', 'Duzib268G1359' => 'dzi', 'ECA232G3929' => 'eca', 'ECA236G2210' => 'eca', 'ECA236G2287' => 'eca', 'ECA240G4568' => 'eca', 'ECA247G0894' => 'eca', 'EL10Ac1g00200' => 'bvu', 'EL10Ac1g00886' => 'bvu', 'EL10As1g23091' => 'bvu', 'EL10As1g23092' => 'bvu', 'Eucgr.A01284' => 'egr', 'Eucgr.A01285' => 'egr', 'Eucgr.D02456' => 'egr', 'Eucgr.E00018' => 'egr', 'Eucgr.E01439' => 'egr', 'Eucgr.G02859' => 'egr', 'FAN01G0168' => 'fan', 'FAN01G0453' => 'fan', 'FAN01G2761' => 'fan', 'FAN02G1239' => 'fan', 'FAN03G0645' => 'fan', 'FAN03G2707' => 'fan', 'FAN03G2978' => 'fan', 'FAN04G0227' => 'fan', 'FAN06G0091' => 'fan', 'FAN06G1418' => 'fan', 'FAN06G1512' => 'fan', 'FAN06G1986' => 'fan', 'FAN06G2905' => 'fan', 'FAN06G4325' => 'fan', 'FAN08G0033' => 'fan', 'FAN09G0642' => 'fan', 'FAN10G1763' => 'fan', 'FAN10G2026' => 'fan', 'FAN10G2513' => 'fan', 'FAN10G3402' => 'fan', 'FAN10G3564' => 'fan', 'FAN10G3987' => 'fan', 'FAN13G1490' => 'fan', 'FAN14G5857' => 'fan', 'FAN18G1188' => 'fan', 'FvH4_5g00750' => 'fve', 'FvH4_6g13410' => 'fve', 'FvH4_7g11740' => 'fve', 'FvH4_7g17410' => 'fve', 'FvH4_7g18860' => 'fve', 'Glyma.01G099100' => 'gma', 'Glyma.01G142300' => 'gma', 'Glyma.03G025500' => 'gma', 'Glyma.03G069700' => 'gma', 'Glyma.03G260000' => 'gma', 'Glyma.09G269800' => 'gma', 'Glyma.10G208700' => 'gma', 'Glyma.18G220400' => 'gma', 'Glyma.20G182000' => 'gma', 'Gohir.A01G221726' => 'ghi', 'Gohir.A07G134600' => 'ghi', 'Gohir.A07G146000' => 'ghi', 'Gohir.A08G173900' => 'ghi', 'Gohir.A09G194900' => 'ghi', 'Gohir.A10G204100' => 'ghi', 'Gohir.A11G080600' => 'ghi', 'Gohir.A11G327500' => 'ghi', 'Gohir.A12G101800' => 'ghi', 'Gohir.D01G211200' => 'ghi', 'Gohir.D07G139200' => 'ghi', 'Gohir.D07G152100' => 'ghi', 'Gohir.D08G192600' => 'ghi', 'Gohir.D09G189200' => 'ghi', 'Gohir.D10G212000' => 'ghi', 'Gohir.D11G085200' => 'ghi', 'Gohir.D11G346400' => 'ghi', 'Gohir.D12G104800' => 'ghi', 'Gorai.001G151300' => 'gra', 'Gorai.001G174100' => 'gra', 'Gorai.002G257000' => 'gra', 'Gorai.004G202600' => 'gra', 'Gorai.007G090900' => 'gra', 'Gorai.007G376700' => 'gra', 'Gorai.008G114100' => 'gra', 'Gorai.011G237900' => 'gra', 'GSVIVG01005450001' => 'vvi', 'GSVIVG01016232001' => 'vvi', 'GSVIVG01026157001' => 'vvi', 'GSVIVG01027419001' => 'vvi', 'GSVIVG01027631001' => 'vvi', 'GSVIVG01034143001' => 'vvi', 'HanXRQChr03g0093921' => 'han', 'HanXRQChr04g0120001' => 'han', 'HanXRQChr04g0122561' => 'han', 'HanXRQChr09g0246851' => 'han', 'HanXRQChr10g0293311' => 'han', 'HanXRQChr13g0425231' => 'han', 'HanXRQChr16g0532571' => 'han', 'Haze_09050' => 'cav', 'Haze_15715' => 'cav', 'Haze_15716' => 'cav', 'Haze_16803' => 'cav', 'Haze_16850' => 'cav', 'Hma1.2p1_0301F.1_g118655' => 'hma', 'Hma1.2p1_0309F.1_g120590' => 'hma', 'Hma1.2p1_0936F.1_g238900' => 'hma', 'Hma1.2p1_3552F.1_g336740' => 'hma', 'HPP92_003520' => 'vpl', 'HPP92_006628' => 'vpl', 'HPP92_006645' => 'vpl', 'HPP92_014669' => 'vpl', 'HPP92_015077' => 'vpl', 'Hund16742' => 'sun', 'Hund17022' => 'sun', 'Lalb_Chr02g0152131' => 'lal', 'Lalb_Chr05g0225371' => 'lal', 'Lalb_Chr07g0189841' => 'lal', 'Lalb_Chr07g0192961' => 'lal', 'Lalb_Chr12g0208221' => 'lal', 'Lalb_Chr13g0291211' => 'lal', 'Lalb_Chr13g0291781' => 'lal', 'Lalb_Chr18g0044651' => 'lal', 'Lalb_Chr21g0313731' => 'lal', 'Lj1g0022533' => 'lja', 'Lj2A18T50' => 'lonja', 'Lj2A92G93' => 'lonja', 'Lj3A965T73' => 'lonja', 'Lj3g0000673' => 'lja', 'Lj3g0002666' => 'lja', 'Lj4g0016985' => 'lja', 'Lj5g0003625' => 'lja', 'Lj7A529G36' => 'lonja', 'Lj9A569T49' => 'lonja', 'Lj9A604T63' => 'lonja', 'Lsat_1_v5_gn_3_132060' => 'lsa', 'Lsat_1_v5_gn_4_68941' => 'lsa', 'Lsat_1_v5_gn_5_95580' => 'lsa', 'Lsat_1_v5_gn_7_161' => 'lsa', 'Lsat_1_v5_gn_7_7041' => 'lsa', 'Lsat_1_v5_gn_9_33481' => 'lsa', 'Lsat_1_v5_gn_9_68260' => 'lsa', 'Manes.01G073100' => 'mes', 'Manes.01G266300' => 'mes', 'Manes.02G033300' => 'mes', 'Manes.05G017900' => 'mes', 'Manes.05G046100' => 'mes', 'Manes.08G080900' => 'mes', 'Manes.10G049400' => 'mes', 'Mapoly0009s0186' => 'mpo', 'Mapoly0036s0118' => 'mpo', 'Mapoly0101s0046' => 'mpo', 'MBI04_g30218_MAGBIO' => 'mbi', 'MBI04_g35564_MAGBIO' => 'mbi', 'MBI12_g34011_MAGBIO' => 'mbi', 'MBI14_g04655_MAGBIO' => 'mbi', 'MCO07G653' => 'mco', 'MCO10G173' => 'mco', 'MD01G1087100' => 'mdo', 'MD01G1104200' => 'mdo', 'MD02G1205100' => 'mdo', 'MD04G1079200' => 'mdo', 'MD04G1131400' => 'mdo', 'MD07G1121600' => 'mdo', 'MD07G1157300' => 'mdo', 'MD07G1171000' => 'mdo', 'MD12G1144500' => 'mdo', 'Medtr1g094610' => 'mtr', 'Medtr4g021795' => 'mtr', 'Medtr4g023760' => 'mtr', 'Medtr7g118050' => 'mtr', 'MELO3C005582.2' => 'cme', 'MELO3C005989.2' => 'cme', 'MELO3C006192.2' => 'cme', 'MELO3C009248.2' => 'cme', 'MELO3C019817.2' => 'cme', 'Migut.B01625' => 'egut', 'Migut.B01915' => 'egut', 'Migut.F01721' => 'egut', 'Migut.J00314' => 'egut', 'MSTRG.20742' => 'ama', 'MSTRG.8134' => 'ama', 'Nitab4.5_0000096g0010' => 'nta', 'Nitab4.5_0000202g0030' => 'nta', 'Nitab4.5_0000216g0370' => 'nta', 'Nitab4.5_0000457g0230' => 'nta', 'Nitab4.5_0001702g0170' => 'nta', 'Nitab4.5_0003607g0010' => 'nta', 'Nitab4.5_0004917g0020' => 'nta', 'Nitab4.5_0007059g0010' => 'nta', 'Nitab4.5_0007184g0010' => 'nta', 'Nitab4.5_0007346g0020' => 'nta', 'Nn1g00410' => 'nnu', 'Nn1g01252' => 'nnu', 'Nn2g11168' => 'nnu', 'Nn2g13403' => 'nnu', 'Nn2g13760' => 'nnu', 'Nn4g26380' => 'nnu', 'Oeu000806.2' => 'oeu', 'Oeu005788.1' => 'oeu', 'Oeu006900.3' => 'oeu', 'Oeu007797.1' => 'oeu', 'Oeu011932.1' => 'oeu', 'Oeu022739.1' => 'oeu', 'Oeu037918.1' => 'oeu', 'Oeu055490.2' => 'oeu', 'Os01g0844400' => 'osa', 'Os02g0819100' => 'osa', 'Os03g0804300' => 'osa', 'Os05g0458000' => 'osa', 'Os07g0467800' => 'osa', 'Os12g0602200' => 'osa', 'Peaxi162Scf00013g03444' => 'pax', 'Peaxi162Scf00094g01120' => 'pax', 'Peaxi162Scf00191g01211' => 'pax', 'Peaxi162Scf00238g01110' => 'pax', 'Peaxi162Scf00330g00719' => 'pax', 'Peaxi162Scf00627g00018' => 'pax', 'PGR031G2686' => 'pgr', 'PGR042G0809' => 'pgr', 'PGR142G0193' => 'pgr', 'PGSC0003DMG400011066' => 'stu', 'PGSC0003DMG400012041' => 'stu', 'PGSC0003DMG400013678' => 'stu', 'PGSC0003DMG400023477' => 'stu', 'PGSC0003DMG400025956' => 'stu', 'PGSC0003DMG401019151' => 'stu', 'Phvul.006G116400' => 'pvu', 'Phvul.007G097300' => 'pvu', 'Phvul.010G015000' => 'pvu', 'Phvul.010G083900' => 'pvu', 'Potri.001G117100' => 'ptr', 'Potri.002G147300' => 'ptr', 'Potri.003G115600' => 'ptr', 'Potri.006G087400' => 'ptr', 'Potri.010G226100' => 'ptr', 'Potri.014G069200' => 'ptr', 'Potri.014G104000' => 'ptr', 'Potri.016G100200' => 'ptr', 'Pp3c10_20450' => 'ppa', 'Pp3c1_42400' => 'ppa', 'Pp3c3_24390' => 'ppa', 'Pp3c3_2860' => 'ppa', 'PRCOL_00003193' => 'pco', 'Prupe.2G144500' => 'ppe', 'Prupe.2G195700' => 'ppe', 'Prupe.2G209800' => 'ppe', 'Prupe.5G080000' => 'ppe', 'Prupe.6G257900' => 'ppe', 'Psat3g001160' => 'psa', 'Psat6g181880' => 'psa', 'Psat7g233720' => 'psa', 'PSO063G7587' => 'pso', 'PSO339G2145' => 'pso', 'PSO339G3369' => 'pso', 'PSO478G2747' => 'pso', 'PSO513G0140' => 'pso', 'PSO782G1614' => 'pso', 'PSO782G4889' => 'pso', 'PSO782G5485' => 'pso', 'PSO801G0241' => 'pso', 'QL07p048854' => 'qlo', 'QL08p046745' => 'qlo', 'QL08p052606' => 'qlo', 'QL08p053414' => 'qlo', 'QL08p054868' => 'qlo', 'RcHm_v2.0_Chr1g0350251' => 'rch', 'RcHm_v2.0_Chr1g0360851' => 'rch', 'RcHm_v2.0_Chr1g0362791' => 'rch', 'RcHm_v2.0_Chr3g0466281' => 'rch', 'RcHm_v2.0_Chr7g0201481' => 'rch', 'Rhsim01G0148600' => 'rsi', 'Rhsim05G0194400' => 'rsi', 'Rhsim07G0000700' => 'rsi', 'Rhsim07G0000800' => 'rsi', 'Rhsim07G0027900' => 'rsi', 'Rhsim09G0149500' => 'rsi', 'RhsimUnG0186900' => 'rsi', 'Sabra01G0089900' => 'sbr', 'Sabra02G0114700' => 'sbr', 'Sabra02G0116300' => 'sbr', 'Sabra03G0080100' => 'sbr', 'Sabra08G0024300' => 'sbr', 'Sabra10G0174300' => 'sbr', 'Sabra14G0048900' => 'sbr', 'Sabra14G0076500' => 'sbr', 'SalBow5G2513' => 'sbo', 'Sc01g0002300' => 'sci', 'Sc01g0004450' => 'sci', 'Sc06g0001680' => 'sci', 'Sc23g0003580' => 'sci', 'Sed0000913' => 'sed', 'Sed0001655' => 'sed', 'Sed0007745' => 'sed', 'Sed0010951' => 'sed', 'Sed0017599' => 'sed', 'Sed0021405' => 'sed', 'Sed0022810' => 'sed', 'SEGI_07099' => 'sgi', 'SEGI_11931' => 'sgi', 'SEGI_13187' => 'sgi', 'SEGI_29958' => 'sgi', 'SEGI_36351' => 'sgi', 'SGA_v2.0_scaffold126G33770' => 'sas', 'SGA_v2.0_scaffold153G37003' => 'sas', 'SGA_v2.0_scaffold2G01359' => 'sas', 'SGA_v2.0_scaffold5G03064' => 'sas', 'SGA_v2.0_scaffold95G28903' => 'sas', 'SHI12701' => 'shi', 'SHI26410' => 'shi', 'SHI38997' => 'shi', 'SHI53759' => 'shi', 'SHI53886' => 'shi', 'SHI54714' => 'shi', 'SMO011G0041' => 'smo', 'SMO146G0251' => 'smo', 'SMO160G0004' => 'smo', 'SMO174G0057' => 'smo', 'SMO244G0089' => 'smo', 'SMO296G0011' => 'smo', 'Solyc01g091280.3' => 'sly', 'Solyc05g047610.3' => 'sly', 'Solyc05g047640.3' => 'sly', 'Solyc05g055630.3' => 'sly', 'Solyc10g018160.2' => 'sly', 'Solyc10g084820.2' => 'sly', 'Solyc10g086565.2' => 'sly', 'Sopen01g037030' => 'spe', 'Sopen05g027920' => 'spe', 'Sopen05g034070' => 'spe', 'Sopen10g007260' => 'spe', 'Sopen10g034260' => 'spe', 'Sopen10g035950' => 'spe', 'Sp3g07710' => 'spa', 'Sp4g27420' => 'spa', 'Sp5g02450' => 'spa', 'Sp6g01280' => 'spa', 'Sp6g38480' => 'spa', 'Sp7g20780' => 'spa', 'TAR374G1413' => 'tar', 'TAR623G1777' => 'tar', 'TAR629G2370' => 'tar', 'TAR633G1759' => 'tar', 'TAR636G3387' => 'tar', 'THA.LOC104802447' => 'tha', 'THA.LOC104813916' => 'tha', 'THA.LOC104816423' => 'tha', 'THA.LOC104817246' => 'tha', 'THA.LOC104825895' => 'tha', 'Thecc.01G335200' => 'tca', 'Thecc.01G377400' => 'tca', 'Thecc.03G262200' => 'tca', 'Thecc.05G036800' => 'tca', 'Thecc.10G080500' => 'tca', 'Thecc.10G080800' => 'tca', 'Thhalv10001560m.g' => 'esa', 'Thhalv10006120m.g' => 'esa', 'Thhalv10014375m.g' => 'esa', 'Thhalv10021264m.g' => 'esa', 'Thhalv10028856m.g' => 'esa', 'TPR.G1914' => 'tpr', 'TPR.G4757' => 'tpr', 'TPR.G5595' => 'tpr', 'TWI14G0952' => 'twi', 'TWI14G1307' => 'twi', 'TWI38G2143' => 'twi', 'TWI59G0826' => 'twi', 'TWI77G0527' => 'twi', 'TWI81G0150' => 'twi', 'unitig_21.g21018' => 'ugi', 'unitig_26.g9725' => 'ugi', 'unitig_744.g24653' => 'ugi', 'unitig_749.g13778' => 'ugi', 'unitig_899.g15035' => 'ugi', 'vmacro04296' => 'vma', 'vmacro04852' => 'vma', 'vmacro13404' => 'vma', 'vmacro20169' => 'vma', 'vmacro21014' => 'vma', 'VMungo0331G0237' => 'vmu', 'VMungo0331G0706' => 'vmu', 'VMungo0331G1361' => 'vmu', 'VMungo0331G1489' => 'vmu', 'VMungo0540G1037' => 'vmu', 'VMungo0720G2487' => 'vmu', 'VMungo0720G2721' => 'vmu', 'Zm00001eb086860' => 'zma', 'Zm00001eb104760' => 'zma', 'Zm00001eb148220' => 'zma', 'Zm00001eb259030' => 'zma', 'Zm00001eb289590' => 'zma', 'Zm00001eb420150' => 'zma' ) $gf_id = 'HOM05D000968' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000968' ) $data_identifier = 'HOM05D000968' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 19, 'bol' => (int) 9, 'bra' => (int) 12, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 5, 'ccan' => (int) 7, 'cde' => (int) 5, 'cfa' => (int) 8, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 4, 'dca' => (int) 5, 'din' => (int) 5, 'dzi' => (int) 12, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 25, 'fve' => (int) 5, 'gma' => (int) 9, 'ghi' => (int) 18, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 7, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 5, 'sun' => (int) 2, 'lal' => (int) 9, 'lja' => (int) 5, 'lonja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 9, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 2, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 3, 'stu' => (int) 6, 'pvu' => (int) 4, 'ptr' => (int) 8, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 3, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 1, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 5, 'sas' => (int) 5, 'shi' => (int) 6, 'smo' => (int) 6, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 3, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420150' $species_info = array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ) $local_species = 'ptr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000968', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p31690' => 'bna', 'A03p36040' => 'bna', 'A03p53730' => 'bna', 'A04p01410' => 'bna', 'A05p05420' => 'bna', 'A05p39630' => 'bna', 'A05p39640' => 'bna', 'A09p00970' => 'bna', 'A09p53060' => 'bna', 'A10p31890' => 'bna', 'Aa31LG10G15040' => 'aar', 'Aa31LG1G21090' => 'aar', 'Aa31LG1G26900' => 'aar', 'Aa31LG3G1820' => 'aar', 'Aa31LG5G1100' => 'aar', 'Aa31LG6G4740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2265' => 'aag', 'Actinidia07998' => 'ach', 'Actinidia11266' => 'ach', 'Actinidia12682' => 'ach', 'Actinidia26479' => 'ach', 'Actinidia31406' => 'ach', 'Actinidia32437' => 'ach', 'Actinidia38862' => 'ach', 'Ah.05g174230' => 'amhyb', 'Ah.05g179070' => 'amhyb', 'Ah.05g179090' => 'amhyb', 'Ah.12g059950' => 'amhyb', 'AL3G20480' => 'aly', 'AL4G44520' => 'aly', 'AL5G43110' => 'aly', 'AL6G13890' => 'aly', 'AL6G52620' => 'aly', 'AL7G30830' => 'aly', 'Aqoxy1G00899' => 'aox', 'Aqoxy5G04333' => 'aox', 'Aqoxy7G00641' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3IZ0NN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4EF6AW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W9P8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79GA3M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C43NQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFCU6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G95YVJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCHK29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LU1UG8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX91RN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGB4B1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8DA0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9H7JI' => 'arhy', 'AT3G09320' => 'ath', 'AT3G60800' => 'ath', 'AT4G00840' => 'ath', 'AT4G22750' => 'ath', 'AT5G04270' => 'ath', 'ATR0090G003' => 'atr', 'ATR0559G349' => 'atr', 'ATR0680G261' => 'atr', 'ATR0810G048' => 'atr', 'Atru.chr12.831' => 'acertr', 'Atru.chr5.303' => 'acertr', 'Atru.chr5.748' => 'acertr', 'Atru.chr8.1999' => 'acertr', 'Atru.chr9.1436' => 'acertr', 'AUR62004211' => 'cqu', 'AUR62004548' => 'cqu', 'AUR62013637' => 'cqu', 'AUR62022662' => 'cqu', 'AUR62025777' => 'cqu', 'AUR62042386' => 'cqu', 'BcaB01g02310' => 'bca', 'BcaB01g06062' => 'bca', 'BcaB02g08975' => 'bca', 'BcaB02g08980' => 'bca', 'BcaC01g04228' => 'bca', 'BcaC01g06830' => 'bca', 'BcaC02g10186' => 'bca', 'BcaC02g12214' => 'bca', 'BcaC04g24101' => 'bca', 'BcaC05g29520' => 'bca', 'BcaC05g29661' => 'bca', 'BcaC06g32130' => 'bca', 'BcaC06g32131' => 'bca', 'BcaC07g40601' => 'bca', 'BcaC07g42641' => 'bca', 'BcaNung01038' => 'bca', 'BcaNung01676' => 'bca', 'BcaNung02480' => 'bca', 'BcaNung07376' => 'bca', 'BolC3t16146H' => 'bol', 'BolC3t16637H' => 'bol', 'BolC4t22257H' => 'bol', 'BolC4t24728H' => 'bol', 'BolC5t34517H' => 'bol', 'BolC7t45703H' => 'bol', 'BolC8t51166H' => 'bol', 'BolC9t53038H' => 'bol', 'BolC9t60000H' => 'bol', 'BraA01t01345Z' => 'bra', 'BraA01t01346Z' => 'bra', 'BraA01t01348Z' => 'bra', 'BraA03t12347Z' => 'bra', 'BraA03t12775Z' => 'bra', 'BraA03t14439Z' => 'bra', 'BraA04t15860Z' => 'bra', 'BraA05t19511Z' => 'bra', 'BraA05t22746Z' => 'bra', 'BraA09t35767Z' => 'bra', 'BraA09t40732Z' => 'bra', 'BraA10t45233Z' => 'bra', 'C03p38720' => 'bna', 'C03p43680' => 'bna', 'C04p06350' => 'bna', 'C04p31800' => 'bna', 'C05p58680' => 'bna', 'C07p52110' => 'bna', 'C08p35760' => 'bna', 'C09p01050' => 'bna', 'C09p72600' => 'bna', 'CAN.G106.2' => 'can', 'CAN.G1482.1' => 'can', 'CAN.G324.12' => 'can', 'CAN.G388.20' => 'can', 'CAN.G412.7' => 'can', 'CAN.G694.32' => 'can', 'CAN.G92.12' => 'can', 'CANSAT11G2353' => 'cansat', 'CANSAT21G1398' => 'cansat', 'CANSAT56G2456' => 'cansat', 'CANSAT56G3031' => 'cansat', 'CANSAT56G4539' => 'cansat', 'CARHR083680' => 'chi', 'CARHR171190' => 'chi', 'CARHR209010' => 'chi', 'CARHR229680' => 'chi', 'CARHR249490' => 'chi', 'Carub.0003s0844' => 'cru', 'Carub.0005s2755' => 'cru', 'Carub.0006s0322' => 'cru', 'Carub.0006s3586' => 'cru', 'Carub.0007s1855' => 'cru', 'Ca_07808_v3' => 'car', 'Ca_09535_v3' => 'car', 'Ca_10548_v3' => 'car', 'Ca_19913_v3' => 'car', 'Ca_19916_v3' => 'car', 'Ca_19975_v3' => 'car', 'CBR_g22876' => 'cbr', 'CBR_g22879' => 'cbr', 'CBR_g38491' => 'cbr', 'CBR_g54185' => 'cbr', 'CBR_g54190' => 'cbr', 'Cc02_g11020' => 'ccan', 'Cc02_g23920' => 'ccan', 'Cc02_g39860' => 'ccan', 'Cc02_g39870' => 'ccan', 'Cc03_g06760' => 'ccan', 'Cc06_g02450' => 'ccan', 'Cc09_g09450' => 'ccan', 'CDE02G1959' => 'cde', 'CDE04G0600' => 'cde', 'CDE07G1996' => 'cde', 'CDE07G2078' => 'cde', 'CDE11G0611' => 'cde', 'Cfa001683' => 'cfa', 'Cfa001734' => 'cfa', 'Cfa001737' => 'cfa', 'Cfa003751' => 'cfa', 'Cfa012019' => 'cfa', 'Cfa017353' => 'cfa', 'Cfa017732' => 'cfa', 'Cfa022464' => 'cfa', 'Ciclev10012400m.g' => 'ccl', 'Ciclev10021242m.g' => 'ccl', 'Ciclev10021302m.g' => 'ccl', 'Ciclev10021463m.g' => 'ccl', 'Ciclev10032359m.g' => 'ccl', 'CiPaw.01G081000' => 'cil', 'CiPaw.01G262500' => 'cil', 'CiPaw.01G269800' => 'cil', 'CiPaw.02G168400' => 'cil', 'CiPaw.05G119500' => 'cil', 'CiPaw.11G147300' => 'cil', 'ClCG01G003630' => 'cla', 'ClCG05G000510' => 'cla', 'ClCG05G002300' => 'cla', 'ClCG08G007650' => 'cla', 'ClCG10G021250' => 'cla', 'COL.COLO4_06218' => 'col', 'COL.COLO4_12538' => 'col', 'COL.COLO4_14775' => 'col', 'COL.COLO4_23875' => 'col', 'Cpa.g.sc141.16' => 'cpa', 'Cpa.g.sc169.16' => 'cpa', 'Cpa.g.sc244.4' => 'cpa', 'Cpa.g.sc244.5' => 'cpa', 'Cpa.g.sc29.87' => 'cpa', 'Cpa.g.sc53.115' => 'cpa', 'Cre03.g207502' => 'cre', 'Cre06.g277000' => 'cre', 'Cre09.g394050' => 'cre', 'CsaV3_3G007680' => 'csa', 'CsaV3_3G009710' => 'csa', 'CsaV3_3G034790' => 'csa', 'CsaV3_5G003750' => 'csa', 'CsaV3_6G036620' => 'csa', 'CSS0002288' => 'camsi', 'CSS0011250' => 'camsi', 'CSS0021619' => 'camsi', 'CSS0046701' => 'camsi', 'DCAR_006420' => 'dca', 'DCAR_006865' => 'dca', 'DCAR_008558' => 'dca', 'DCAR_028754' => 'dca', 'DCAR_028755' => 'dca', 'Dinv31218' => 'din', 'Dinv32371' => 'din', 'Dinv34250' => 'din', 'Dinv37156' => 'din', 'Dinv43704' => 'din', 'Duzib093G1811' => 'dzi', 'Duzib106G1622' => 'dzi', 'Duzib114G0504' => 'dzi', 'Duzib128G0338' => 'dzi', 'Duzib128G1577' => 'dzi', 'Duzib133G0104' => 'dzi', 'Duzib133G1080' => 'dzi', 'Duzib138G0324' => 'dzi', 'Duzib138G0394' => 'dzi', 'Duzib205G0122' => 'dzi', 'Duzib268G1020' => 'dzi', 'Duzib268G1359' => 'dzi', 'ECA232G3929' => 'eca', 'ECA236G2210' => 'eca', 'ECA236G2287' => 'eca', 'ECA240G4568' => 'eca', 'ECA247G0894' => 'eca', 'EL10Ac1g00200' => 'bvu', 'EL10Ac1g00886' => 'bvu', 'EL10As1g23091' => 'bvu', 'EL10As1g23092' => 'bvu', 'Eucgr.A01284' => 'egr', 'Eucgr.A01285' => 'egr', 'Eucgr.D02456' => 'egr', 'Eucgr.E00018' => 'egr', 'Eucgr.E01439' => 'egr', 'Eucgr.G02859' => 'egr', 'FAN01G0168' => 'fan', 'FAN01G0453' => 'fan', 'FAN01G2761' => 'fan', 'FAN02G1239' => 'fan', 'FAN03G0645' => 'fan', 'FAN03G2707' => 'fan', 'FAN03G2978' => 'fan', 'FAN04G0227' => 'fan', 'FAN06G0091' => 'fan', 'FAN06G1418' => 'fan', 'FAN06G1512' => 'fan', 'FAN06G1986' => 'fan', 'FAN06G2905' => 'fan', 'FAN06G4325' => 'fan', 'FAN08G0033' => 'fan', 'FAN09G0642' => 'fan', 'FAN10G1763' => 'fan', 'FAN10G2026' => 'fan', 'FAN10G2513' => 'fan', 'FAN10G3402' => 'fan', 'FAN10G3564' => 'fan', 'FAN10G3987' => 'fan', 'FAN13G1490' => 'fan', 'FAN14G5857' => 'fan', 'FAN18G1188' => 'fan', 'FvH4_5g00750' => 'fve', 'FvH4_6g13410' => 'fve', 'FvH4_7g11740' => 'fve', 'FvH4_7g17410' => 'fve', 'FvH4_7g18860' => 'fve', 'Glyma.01G099100' => 'gma', 'Glyma.01G142300' => 'gma', 'Glyma.03G025500' => 'gma', 'Glyma.03G069700' => 'gma', 'Glyma.03G260000' => 'gma', 'Glyma.09G269800' => 'gma', 'Glyma.10G208700' => 'gma', 'Glyma.18G220400' => 'gma', 'Glyma.20G182000' => 'gma', 'Gohir.A01G221726' => 'ghi', 'Gohir.A07G134600' => 'ghi', 'Gohir.A07G146000' => 'ghi', 'Gohir.A08G173900' => 'ghi', 'Gohir.A09G194900' => 'ghi', 'Gohir.A10G204100' => 'ghi', 'Gohir.A11G080600' => 'ghi', 'Gohir.A11G327500' => 'ghi', 'Gohir.A12G101800' => 'ghi', 'Gohir.D01G211200' => 'ghi', 'Gohir.D07G139200' => 'ghi', 'Gohir.D07G152100' => 'ghi', 'Gohir.D08G192600' => 'ghi', 'Gohir.D09G189200' => 'ghi', 'Gohir.D10G212000' => 'ghi', 'Gohir.D11G085200' => 'ghi', 'Gohir.D11G346400' => 'ghi', 'Gohir.D12G104800' => 'ghi', 'Gorai.001G151300' => 'gra', 'Gorai.001G174100' => 'gra', 'Gorai.002G257000' => 'gra', 'Gorai.004G202600' => 'gra', 'Gorai.007G090900' => 'gra', 'Gorai.007G376700' => 'gra', 'Gorai.008G114100' => 'gra', 'Gorai.011G237900' => 'gra', 'GSVIVG01005450001' => 'vvi', 'GSVIVG01016232001' => 'vvi', 'GSVIVG01026157001' => 'vvi', 'GSVIVG01027419001' => 'vvi', 'GSVIVG01027631001' => 'vvi', 'GSVIVG01034143001' => 'vvi', 'HanXRQChr03g0093921' => 'han', 'HanXRQChr04g0120001' => 'han', 'HanXRQChr04g0122561' => 'han', 'HanXRQChr09g0246851' => 'han', 'HanXRQChr10g0293311' => 'han', 'HanXRQChr13g0425231' => 'han', 'HanXRQChr16g0532571' => 'han', 'Haze_09050' => 'cav', 'Haze_15715' => 'cav', 'Haze_15716' => 'cav', 'Haze_16803' => 'cav', 'Haze_16850' => 'cav', 'Hma1.2p1_0301F.1_g118655' => 'hma', 'Hma1.2p1_0309F.1_g120590' => 'hma', 'Hma1.2p1_0936F.1_g238900' => 'hma', 'Hma1.2p1_3552F.1_g336740' => 'hma', 'HPP92_003520' => 'vpl', 'HPP92_006628' => 'vpl', 'HPP92_006645' => 'vpl', 'HPP92_014669' => 'vpl', 'HPP92_015077' => 'vpl', 'Hund16742' => 'sun', 'Hund17022' => 'sun', 'Lalb_Chr02g0152131' => 'lal', 'Lalb_Chr05g0225371' => 'lal', 'Lalb_Chr07g0189841' => 'lal', 'Lalb_Chr07g0192961' => 'lal', 'Lalb_Chr12g0208221' => 'lal', 'Lalb_Chr13g0291211' => 'lal', 'Lalb_Chr13g0291781' => 'lal', 'Lalb_Chr18g0044651' => 'lal', 'Lalb_Chr21g0313731' => 'lal', 'Lj1g0022533' => 'lja', 'Lj2A18T50' => 'lonja', 'Lj2A92G93' => 'lonja', 'Lj3A965T73' => 'lonja', 'Lj3g0000673' => 'lja', 'Lj3g0002666' => 'lja', 'Lj4g0016985' => 'lja', 'Lj5g0003625' => 'lja', 'Lj7A529G36' => 'lonja', 'Lj9A569T49' => 'lonja', 'Lj9A604T63' => 'lonja', 'Lsat_1_v5_gn_3_132060' => 'lsa', 'Lsat_1_v5_gn_4_68941' => 'lsa', 'Lsat_1_v5_gn_5_95580' => 'lsa', 'Lsat_1_v5_gn_7_161' => 'lsa', 'Lsat_1_v5_gn_7_7041' => 'lsa', 'Lsat_1_v5_gn_9_33481' => 'lsa', 'Lsat_1_v5_gn_9_68260' => 'lsa', 'Manes.01G073100' => 'mes', 'Manes.01G266300' => 'mes', 'Manes.02G033300' => 'mes', 'Manes.05G017900' => 'mes', 'Manes.05G046100' => 'mes', 'Manes.08G080900' => 'mes', 'Manes.10G049400' => 'mes', 'Mapoly0009s0186' => 'mpo', 'Mapoly0036s0118' => 'mpo', 'Mapoly0101s0046' => 'mpo', 'MBI04_g30218_MAGBIO' => 'mbi', 'MBI04_g35564_MAGBIO' => 'mbi', 'MBI12_g34011_MAGBIO' => 'mbi', 'MBI14_g04655_MAGBIO' => 'mbi', 'MCO07G653' => 'mco', 'MCO10G173' => 'mco', 'MD01G1087100' => 'mdo', 'MD01G1104200' => 'mdo', 'MD02G1205100' => 'mdo', 'MD04G1079200' => 'mdo', 'MD04G1131400' => 'mdo', 'MD07G1121600' => 'mdo', 'MD07G1157300' => 'mdo', 'MD07G1171000' => 'mdo', 'MD12G1144500' => 'mdo', 'Medtr1g094610' => 'mtr', 'Medtr4g021795' => 'mtr', 'Medtr4g023760' => 'mtr', 'Medtr7g118050' => 'mtr', 'MELO3C005582.2' => 'cme', 'MELO3C005989.2' => 'cme', 'MELO3C006192.2' => 'cme', 'MELO3C009248.2' => 'cme', 'MELO3C019817.2' => 'cme', 'Migut.B01625' => 'egut', 'Migut.B01915' => 'egut', 'Migut.F01721' => 'egut', 'Migut.J00314' => 'egut', 'MSTRG.20742' => 'ama', 'MSTRG.8134' => 'ama', 'Nitab4.5_0000096g0010' => 'nta', 'Nitab4.5_0000202g0030' => 'nta', 'Nitab4.5_0000216g0370' => 'nta', 'Nitab4.5_0000457g0230' => 'nta', 'Nitab4.5_0001702g0170' => 'nta', 'Nitab4.5_0003607g0010' => 'nta', 'Nitab4.5_0004917g0020' => 'nta', 'Nitab4.5_0007059g0010' => 'nta', 'Nitab4.5_0007184g0010' => 'nta', 'Nitab4.5_0007346g0020' => 'nta', 'Nn1g00410' => 'nnu', 'Nn1g01252' => 'nnu', 'Nn2g11168' => 'nnu', 'Nn2g13403' => 'nnu', 'Nn2g13760' => 'nnu', 'Nn4g26380' => 'nnu', 'Oeu000806.2' => 'oeu', 'Oeu005788.1' => 'oeu', 'Oeu006900.3' => 'oeu', 'Oeu007797.1' => 'oeu', 'Oeu011932.1' => 'oeu', 'Oeu022739.1' => 'oeu', 'Oeu037918.1' => 'oeu', 'Oeu055490.2' => 'oeu', 'Os01g0844400' => 'osa', 'Os02g0819100' => 'osa', 'Os03g0804300' => 'osa', 'Os05g0458000' => 'osa', 'Os07g0467800' => 'osa', 'Os12g0602200' => 'osa', 'Peaxi162Scf00013g03444' => 'pax', 'Peaxi162Scf00094g01120' => 'pax', 'Peaxi162Scf00191g01211' => 'pax', 'Peaxi162Scf00238g01110' => 'pax', 'Peaxi162Scf00330g00719' => 'pax', 'Peaxi162Scf00627g00018' => 'pax', 'PGR031G2686' => 'pgr', 'PGR042G0809' => 'pgr', 'PGR142G0193' => 'pgr', 'PGSC0003DMG400011066' => 'stu', 'PGSC0003DMG400012041' => 'stu', 'PGSC0003DMG400013678' => 'stu', 'PGSC0003DMG400023477' => 'stu', 'PGSC0003DMG400025956' => 'stu', 'PGSC0003DMG401019151' => 'stu', 'Phvul.006G116400' => 'pvu', 'Phvul.007G097300' => 'pvu', 'Phvul.010G015000' => 'pvu', 'Phvul.010G083900' => 'pvu', 'Potri.001G117100' => 'ptr', 'Potri.002G147300' => 'ptr', 'Potri.003G115600' => 'ptr', 'Potri.006G087400' => 'ptr', 'Potri.010G226100' => 'ptr', 'Potri.014G069200' => 'ptr', 'Potri.014G104000' => 'ptr', 'Potri.016G100200' => 'ptr', 'Pp3c10_20450' => 'ppa', 'Pp3c1_42400' => 'ppa', 'Pp3c3_24390' => 'ppa', 'Pp3c3_2860' => 'ppa', 'PRCOL_00003193' => 'pco', 'Prupe.2G144500' => 'ppe', 'Prupe.2G195700' => 'ppe', 'Prupe.2G209800' => 'ppe', 'Prupe.5G080000' => 'ppe', 'Prupe.6G257900' => 'ppe', 'Psat3g001160' => 'psa', 'Psat6g181880' => 'psa', 'Psat7g233720' => 'psa', 'PSO063G7587' => 'pso', 'PSO339G2145' => 'pso', 'PSO339G3369' => 'pso', 'PSO478G2747' => 'pso', 'PSO513G0140' => 'pso', 'PSO782G1614' => 'pso', 'PSO782G4889' => 'pso', 'PSO782G5485' => 'pso', 'PSO801G0241' => 'pso', 'QL07p048854' => 'qlo', 'QL08p046745' => 'qlo', 'QL08p052606' => 'qlo', 'QL08p053414' => 'qlo', 'QL08p054868' => 'qlo', 'RcHm_v2.0_Chr1g0350251' => 'rch', 'RcHm_v2.0_Chr1g0360851' => 'rch', 'RcHm_v2.0_Chr1g0362791' => 'rch', 'RcHm_v2.0_Chr3g0466281' => 'rch', 'RcHm_v2.0_Chr7g0201481' => 'rch', 'Rhsim01G0148600' => 'rsi', 'Rhsim05G0194400' => 'rsi', 'Rhsim07G0000700' => 'rsi', 'Rhsim07G0000800' => 'rsi', 'Rhsim07G0027900' => 'rsi', 'Rhsim09G0149500' => 'rsi', 'RhsimUnG0186900' => 'rsi', 'Sabra01G0089900' => 'sbr', 'Sabra02G0114700' => 'sbr', 'Sabra02G0116300' => 'sbr', 'Sabra03G0080100' => 'sbr', 'Sabra08G0024300' => 'sbr', 'Sabra10G0174300' => 'sbr', 'Sabra14G0048900' => 'sbr', 'Sabra14G0076500' => 'sbr', 'SalBow5G2513' => 'sbo', 'Sc01g0002300' => 'sci', 'Sc01g0004450' => 'sci', 'Sc06g0001680' => 'sci', 'Sc23g0003580' => 'sci', 'Sed0000913' => 'sed', 'Sed0001655' => 'sed', 'Sed0007745' => 'sed', 'Sed0010951' => 'sed', 'Sed0017599' => 'sed', 'Sed0021405' => 'sed', 'Sed0022810' => 'sed', 'SEGI_07099' => 'sgi', 'SEGI_11931' => 'sgi', 'SEGI_13187' => 'sgi', 'SEGI_29958' => 'sgi', 'SEGI_36351' => 'sgi', 'SGA_v2.0_scaffold126G33770' => 'sas', 'SGA_v2.0_scaffold153G37003' => 'sas', 'SGA_v2.0_scaffold2G01359' => 'sas', 'SGA_v2.0_scaffold5G03064' => 'sas', 'SGA_v2.0_scaffold95G28903' => 'sas', 'SHI12701' => 'shi', 'SHI26410' => 'shi', 'SHI38997' => 'shi', 'SHI53759' => 'shi', 'SHI53886' => 'shi', 'SHI54714' => 'shi', 'SMO011G0041' => 'smo', 'SMO146G0251' => 'smo', 'SMO160G0004' => 'smo', 'SMO174G0057' => 'smo', 'SMO244G0089' => 'smo', 'SMO296G0011' => 'smo', 'Solyc01g091280.3' => 'sly', 'Solyc05g047610.3' => 'sly', 'Solyc05g047640.3' => 'sly', 'Solyc05g055630.3' => 'sly', 'Solyc10g018160.2' => 'sly', 'Solyc10g084820.2' => 'sly', 'Solyc10g086565.2' => 'sly', 'Sopen01g037030' => 'spe', 'Sopen05g027920' => 'spe', 'Sopen05g034070' => 'spe', 'Sopen10g007260' => 'spe', 'Sopen10g034260' => 'spe', 'Sopen10g035950' => 'spe', 'Sp3g07710' => 'spa', 'Sp4g27420' => 'spa', 'Sp5g02450' => 'spa', 'Sp6g01280' => 'spa', 'Sp6g38480' => 'spa', 'Sp7g20780' => 'spa', 'TAR374G1413' => 'tar', 'TAR623G1777' => 'tar', 'TAR629G2370' => 'tar', 'TAR633G1759' => 'tar', 'TAR636G3387' => 'tar', 'THA.LOC104802447' => 'tha', 'THA.LOC104813916' => 'tha', 'THA.LOC104816423' => 'tha', 'THA.LOC104817246' => 'tha', 'THA.LOC104825895' => 'tha', 'Thecc.01G335200' => 'tca', 'Thecc.01G377400' => 'tca', 'Thecc.03G262200' => 'tca', 'Thecc.05G036800' => 'tca', 'Thecc.10G080500' => 'tca', 'Thecc.10G080800' => 'tca', 'Thhalv10001560m.g' => 'esa', 'Thhalv10006120m.g' => 'esa', 'Thhalv10014375m.g' => 'esa', 'Thhalv10021264m.g' => 'esa', 'Thhalv10028856m.g' => 'esa', 'TPR.G1914' => 'tpr', 'TPR.G4757' => 'tpr', 'TPR.G5595' => 'tpr', 'TWI14G0952' => 'twi', 'TWI14G1307' => 'twi', 'TWI38G2143' => 'twi', 'TWI59G0826' => 'twi', 'TWI77G0527' => 'twi', 'TWI81G0150' => 'twi', 'unitig_21.g21018' => 'ugi', 'unitig_26.g9725' => 'ugi', 'unitig_744.g24653' => 'ugi', 'unitig_749.g13778' => 'ugi', 'unitig_899.g15035' => 'ugi', 'vmacro04296' => 'vma', 'vmacro04852' => 'vma', 'vmacro13404' => 'vma', 'vmacro20169' => 'vma', 'vmacro21014' => 'vma', 'VMungo0331G0237' => 'vmu', 'VMungo0331G0706' => 'vmu', 'VMungo0331G1361' => 'vmu', 'VMungo0331G1489' => 'vmu', 'VMungo0540G1037' => 'vmu', 'VMungo0720G2487' => 'vmu', 'VMungo0720G2721' => 'vmu', 'Zm00001eb086860' => 'zma', 'Zm00001eb104760' => 'zma', 'Zm00001eb148220' => 'zma', 'Zm00001eb259030' => 'zma', 'Zm00001eb289590' => 'zma', 'Zm00001eb420150' => 'zma' ), 'gf_id' => 'HOM05D000968', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000968' ), 'data_identifier' => 'HOM05D000968', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000968', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p31690' => 'bna', 'A03p36040' => 'bna', 'A03p53730' => 'bna', 'A04p01410' => 'bna', 'A05p05420' => 'bna', 'A05p39630' => 'bna', 'A05p39640' => 'bna', 'A09p00970' => 'bna', 'A09p53060' => 'bna', 'A10p31890' => 'bna', 'Aa31LG10G15040' => 'aar', 'Aa31LG1G21090' => 'aar', 'Aa31LG1G26900' => 'aar', 'Aa31LG3G1820' => 'aar', 'Aa31LG5G1100' => 'aar', 'Aa31LG6G4740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2265' => 'aag', 'Actinidia07998' => 'ach', 'Actinidia11266' => 'ach', 'Actinidia12682' => 'ach', 'Actinidia26479' => 'ach', 'Actinidia31406' => 'ach', 'Actinidia32437' => 'ach', 'Actinidia38862' => 'ach', 'Ah.05g174230' => 'amhyb', 'Ah.05g179070' => 'amhyb', 'Ah.05g179090' => 'amhyb', 'Ah.12g059950' => 'amhyb', 'AL3G20480' => 'aly', 'AL4G44520' => 'aly', 'AL5G43110' => 'aly', 'AL6G13890' => 'aly', 'AL6G52620' => 'aly', 'AL7G30830' => 'aly', 'Aqoxy1G00899' => 'aox', 'Aqoxy5G04333' => 'aox', 'Aqoxy7G00641' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3IZ0NN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4EF6AW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W9P8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79GA3M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C43NQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFCU6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G95YVJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCHK29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LU1UG8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX91RN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGB4B1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8DA0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9H7JI' => 'arhy', 'AT3G09320' => 'ath', 'AT3G60800' => 'ath', 'AT4G00840' => 'ath', 'AT4G22750' => 'ath', 'AT5G04270' => 'ath', 'ATR0090G003' => 'atr', 'ATR0559G349' => 'atr', 'ATR0680G261' => 'atr', 'ATR0810G048' => 'atr', 'Atru.chr12.831' => 'acertr', 'Atru.chr5.303' => 'acertr', 'Atru.chr5.748' => 'acertr', 'Atru.chr8.1999' => 'acertr', 'Atru.chr9.1436' => 'acertr', 'AUR62004211' => 'cqu', 'AUR62004548' => 'cqu', 'AUR62013637' => 'cqu', 'AUR62022662' => 'cqu', 'AUR62025777' => 'cqu', 'AUR62042386' => 'cqu', 'BcaB01g02310' => 'bca', 'BcaB01g06062' => 'bca', 'BcaB02g08975' => 'bca', 'BcaB02g08980' => 'bca', 'BcaC01g04228' => 'bca', 'BcaC01g06830' => 'bca', 'BcaC02g10186' => 'bca', 'BcaC02g12214' => 'bca', 'BcaC04g24101' => 'bca', 'BcaC05g29520' => 'bca', 'BcaC05g29661' => 'bca', 'BcaC06g32130' => 'bca', 'BcaC06g32131' => 'bca', 'BcaC07g40601' => 'bca', 'BcaC07g42641' => 'bca', 'BcaNung01038' => 'bca', 'BcaNung01676' => 'bca', 'BcaNung02480' => 'bca', 'BcaNung07376' => 'bca', 'BolC3t16146H' => 'bol', 'BolC3t16637H' => 'bol', 'BolC4t22257H' => 'bol', 'BolC4t24728H' => 'bol', 'BolC5t34517H' => 'bol', 'BolC7t45703H' => 'bol', 'BolC8t51166H' => 'bol', 'BolC9t53038H' => 'bol', 'BolC9t60000H' => 'bol', 'BraA01t01345Z' => 'bra', 'BraA01t01346Z' => 'bra', 'BraA01t01348Z' => 'bra', 'BraA03t12347Z' => 'bra', 'BraA03t12775Z' => 'bra', 'BraA03t14439Z' => 'bra', 'BraA04t15860Z' => 'bra', 'BraA05t19511Z' => 'bra', 'BraA05t22746Z' => 'bra', 'BraA09t35767Z' => 'bra', 'BraA09t40732Z' => 'bra', 'BraA10t45233Z' => 'bra', 'C03p38720' => 'bna', 'C03p43680' => 'bna', 'C04p06350' => 'bna', 'C04p31800' => 'bna', 'C05p58680' => 'bna', 'C07p52110' => 'bna', 'C08p35760' => 'bna', 'C09p01050' => 'bna', 'C09p72600' => 'bna', 'CAN.G106.2' => 'can', 'CAN.G1482.1' => 'can', 'CAN.G324.12' => 'can', 'CAN.G388.20' => 'can', 'CAN.G412.7' => 'can', 'CAN.G694.32' => 'can', 'CAN.G92.12' => 'can', 'CANSAT11G2353' => 'cansat', 'CANSAT21G1398' => 'cansat', 'CANSAT56G2456' => 'cansat', 'CANSAT56G3031' => 'cansat', 'CANSAT56G4539' => 'cansat', 'CARHR083680' => 'chi', 'CARHR171190' => 'chi', 'CARHR209010' => 'chi', 'CARHR229680' => 'chi', 'CARHR249490' => 'chi', 'Carub.0003s0844' => 'cru', 'Carub.0005s2755' => 'cru', 'Carub.0006s0322' => 'cru', 'Carub.0006s3586' => 'cru', 'Carub.0007s1855' => 'cru', 'Ca_07808_v3' => 'car', 'Ca_09535_v3' => 'car', 'Ca_10548_v3' => 'car', 'Ca_19913_v3' => 'car', 'Ca_19916_v3' => 'car', 'Ca_19975_v3' => 'car', 'CBR_g22876' => 'cbr', 'CBR_g22879' => 'cbr', 'CBR_g38491' => 'cbr', 'CBR_g54185' => 'cbr', 'CBR_g54190' => 'cbr', 'Cc02_g11020' => 'ccan', 'Cc02_g23920' => 'ccan', 'Cc02_g39860' => 'ccan', 'Cc02_g39870' => 'ccan', 'Cc03_g06760' => 'ccan', 'Cc06_g02450' => 'ccan', 'Cc09_g09450' => 'ccan', 'CDE02G1959' => 'cde', 'CDE04G0600' => 'cde', 'CDE07G1996' => 'cde', 'CDE07G2078' => 'cde', 'CDE11G0611' => 'cde', 'Cfa001683' => 'cfa', 'Cfa001734' => 'cfa', 'Cfa001737' => 'cfa', 'Cfa003751' => 'cfa', 'Cfa012019' => 'cfa', 'Cfa017353' => 'cfa', 'Cfa017732' => 'cfa', 'Cfa022464' => 'cfa', 'Ciclev10012400m.g' => 'ccl', 'Ciclev10021242m.g' => 'ccl', 'Ciclev10021302m.g' => 'ccl', 'Ciclev10021463m.g' => 'ccl', 'Ciclev10032359m.g' => 'ccl', 'CiPaw.01G081000' => 'cil', 'CiPaw.01G262500' => 'cil', 'CiPaw.01G269800' => 'cil', 'CiPaw.02G168400' => 'cil', 'CiPaw.05G119500' => 'cil', 'CiPaw.11G147300' => 'cil', 'ClCG01G003630' => 'cla', 'ClCG05G000510' => 'cla', 'ClCG05G002300' => 'cla', 'ClCG08G007650' => 'cla', 'ClCG10G021250' => 'cla', 'COL.COLO4_06218' => 'col', 'COL.COLO4_12538' => 'col', 'COL.COLO4_14775' => 'col', 'COL.COLO4_23875' => 'col', 'Cpa.g.sc141.16' => 'cpa', 'Cpa.g.sc169.16' => 'cpa', 'Cpa.g.sc244.4' => 'cpa', 'Cpa.g.sc244.5' => 'cpa', 'Cpa.g.sc29.87' => 'cpa', 'Cpa.g.sc53.115' => 'cpa', 'Cre03.g207502' => 'cre', 'Cre06.g277000' => 'cre', 'Cre09.g394050' => 'cre', 'CsaV3_3G007680' => 'csa', 'CsaV3_3G009710' => 'csa', 'CsaV3_3G034790' => 'csa', 'CsaV3_5G003750' => 'csa', 'CsaV3_6G036620' => 'csa', 'CSS0002288' => 'camsi', 'CSS0011250' => 'camsi', 'CSS0021619' => 'camsi', 'CSS0046701' => 'camsi', 'DCAR_006420' => 'dca', 'DCAR_006865' => 'dca', 'DCAR_008558' => 'dca', 'DCAR_028754' => 'dca', 'DCAR_028755' => 'dca', 'Dinv31218' => 'din', 'Dinv32371' => 'din', 'Dinv34250' => 'din', 'Dinv37156' => 'din', 'Dinv43704' => 'din', 'Duzib093G1811' => 'dzi', 'Duzib106G1622' => 'dzi', 'Duzib114G0504' => 'dzi', 'Duzib128G0338' => 'dzi', 'Duzib128G1577' => 'dzi', 'Duzib133G0104' => 'dzi', 'Duzib133G1080' => 'dzi', 'Duzib138G0324' => 'dzi', 'Duzib138G0394' => 'dzi', 'Duzib205G0122' => 'dzi', 'Duzib268G1020' => 'dzi', 'Duzib268G1359' => 'dzi', 'ECA232G3929' => 'eca', 'ECA236G2210' => 'eca', 'ECA236G2287' => 'eca', 'ECA240G4568' => 'eca', 'ECA247G0894' => 'eca', 'EL10Ac1g00200' => 'bvu', 'EL10Ac1g00886' => 'bvu', 'EL10As1g23091' => 'bvu', 'EL10As1g23092' => 'bvu', 'Eucgr.A01284' => 'egr', 'Eucgr.A01285' => 'egr', 'Eucgr.D02456' => 'egr', 'Eucgr.E00018' => 'egr', 'Eucgr.E01439' => 'egr', 'Eucgr.G02859' => 'egr', 'FAN01G0168' => 'fan', 'FAN01G0453' => 'fan', 'FAN01G2761' => 'fan', 'FAN02G1239' => 'fan', 'FAN03G0645' => 'fan', 'FAN03G2707' => 'fan', 'FAN03G2978' => 'fan', 'FAN04G0227' => 'fan', 'FAN06G0091' => 'fan', 'FAN06G1418' => 'fan', 'FAN06G1512' => 'fan', 'FAN06G1986' => 'fan', 'FAN06G2905' => 'fan', 'FAN06G4325' => 'fan', 'FAN08G0033' => 'fan', 'FAN09G0642' => 'fan', 'FAN10G1763' => 'fan', 'FAN10G2026' => 'fan', 'FAN10G2513' => 'fan', 'FAN10G3402' => 'fan', 'FAN10G3564' => 'fan', 'FAN10G3987' => 'fan', 'FAN13G1490' => 'fan', 'FAN14G5857' => 'fan', 'FAN18G1188' => 'fan', 'FvH4_5g00750' => 'fve', 'FvH4_6g13410' => 'fve', 'FvH4_7g11740' => 'fve', 'FvH4_7g17410' => 'fve', 'FvH4_7g18860' => 'fve', 'Glyma.01G099100' => 'gma', 'Glyma.01G142300' => 'gma', 'Glyma.03G025500' => 'gma', 'Glyma.03G069700' => 'gma', 'Glyma.03G260000' => 'gma', 'Glyma.09G269800' => 'gma', 'Glyma.10G208700' => 'gma', 'Glyma.18G220400' => 'gma', 'Glyma.20G182000' => 'gma', 'Gohir.A01G221726' => 'ghi', 'Gohir.A07G134600' => 'ghi', 'Gohir.A07G146000' => 'ghi', 'Gohir.A08G173900' => 'ghi', 'Gohir.A09G194900' => 'ghi', 'Gohir.A10G204100' => 'ghi', 'Gohir.A11G080600' => 'ghi', 'Gohir.A11G327500' => 'ghi', 'Gohir.A12G101800' => 'ghi', 'Gohir.D01G211200' => 'ghi', 'Gohir.D07G139200' => 'ghi', 'Gohir.D07G152100' => 'ghi', 'Gohir.D08G192600' => 'ghi', 'Gohir.D09G189200' => 'ghi', 'Gohir.D10G212000' => 'ghi', 'Gohir.D11G085200' => 'ghi', 'Gohir.D11G346400' => 'ghi', 'Gohir.D12G104800' => 'ghi', 'Gorai.001G151300' => 'gra', 'Gorai.001G174100' => 'gra', 'Gorai.002G257000' => 'gra', 'Gorai.004G202600' => 'gra', 'Gorai.007G090900' => 'gra', 'Gorai.007G376700' => 'gra', 'Gorai.008G114100' => 'gra', 'Gorai.011G237900' => 'gra', 'GSVIVG01005450001' => 'vvi', 'GSVIVG01016232001' => 'vvi', 'GSVIVG01026157001' => 'vvi', 'GSVIVG01027419001' => 'vvi', 'GSVIVG01027631001' => 'vvi', 'GSVIVG01034143001' => 'vvi', 'HanXRQChr03g0093921' => 'han', 'HanXRQChr04g0120001' => 'han', 'HanXRQChr04g0122561' => 'han', 'HanXRQChr09g0246851' => 'han', 'HanXRQChr10g0293311' => 'han', 'HanXRQChr13g0425231' => 'han', 'HanXRQChr16g0532571' => 'han', 'Haze_09050' => 'cav', 'Haze_15715' => 'cav', 'Haze_15716' => 'cav', 'Haze_16803' => 'cav', 'Haze_16850' => 'cav', 'Hma1.2p1_0301F.1_g118655' => 'hma', 'Hma1.2p1_0309F.1_g120590' => 'hma', 'Hma1.2p1_0936F.1_g238900' => 'hma', 'Hma1.2p1_3552F.1_g336740' => 'hma', 'HPP92_003520' => 'vpl', 'HPP92_006628' => 'vpl', 'HPP92_006645' => 'vpl', 'HPP92_014669' => 'vpl', 'HPP92_015077' => 'vpl', 'Hund16742' => 'sun', 'Hund17022' => 'sun', 'Lalb_Chr02g0152131' => 'lal', 'Lalb_Chr05g0225371' => 'lal', 'Lalb_Chr07g0189841' => 'lal', 'Lalb_Chr07g0192961' => 'lal', 'Lalb_Chr12g0208221' => 'lal', 'Lalb_Chr13g0291211' => 'lal', 'Lalb_Chr13g0291781' => 'lal', 'Lalb_Chr18g0044651' => 'lal', 'Lalb_Chr21g0313731' => 'lal', 'Lj1g0022533' => 'lja', 'Lj2A18T50' => 'lonja', 'Lj2A92G93' => 'lonja', 'Lj3A965T73' => 'lonja', 'Lj3g0000673' => 'lja', 'Lj3g0002666' => 'lja', 'Lj4g0016985' => 'lja', 'Lj5g0003625' => 'lja', 'Lj7A529G36' => 'lonja', 'Lj9A569T49' => 'lonja', 'Lj9A604T63' => 'lonja', 'Lsat_1_v5_gn_3_132060' => 'lsa', 'Lsat_1_v5_gn_4_68941' => 'lsa', 'Lsat_1_v5_gn_5_95580' => 'lsa', 'Lsat_1_v5_gn_7_161' => 'lsa', 'Lsat_1_v5_gn_7_7041' => 'lsa', 'Lsat_1_v5_gn_9_33481' => 'lsa', 'Lsat_1_v5_gn_9_68260' => 'lsa', 'Manes.01G073100' => 'mes', 'Manes.01G266300' => 'mes', 'Manes.02G033300' => 'mes', 'Manes.05G017900' => 'mes', 'Manes.05G046100' => 'mes', 'Manes.08G080900' => 'mes', 'Manes.10G049400' => 'mes', 'Mapoly0009s0186' => 'mpo', 'Mapoly0036s0118' => 'mpo', 'Mapoly0101s0046' => 'mpo', 'MBI04_g30218_MAGBIO' => 'mbi', 'MBI04_g35564_MAGBIO' => 'mbi', 'MBI12_g34011_MAGBIO' => 'mbi', 'MBI14_g04655_MAGBIO' => 'mbi', 'MCO07G653' => 'mco', 'MCO10G173' => 'mco', 'MD01G1087100' => 'mdo', 'MD01G1104200' => 'mdo', 'MD02G1205100' => 'mdo', 'MD04G1079200' => 'mdo', 'MD04G1131400' => 'mdo', 'MD07G1121600' => 'mdo', 'MD07G1157300' => 'mdo', 'MD07G1171000' => 'mdo', 'MD12G1144500' => 'mdo', 'Medtr1g094610' => 'mtr', 'Medtr4g021795' => 'mtr', 'Medtr4g023760' => 'mtr', 'Medtr7g118050' => 'mtr', 'MELO3C005582.2' => 'cme', 'MELO3C005989.2' => 'cme', 'MELO3C006192.2' => 'cme', 'MELO3C009248.2' => 'cme', 'MELO3C019817.2' => 'cme', 'Migut.B01625' => 'egut', 'Migut.B01915' => 'egut', 'Migut.F01721' => 'egut', 'Migut.J00314' => 'egut', 'MSTRG.20742' => 'ama', 'MSTRG.8134' => 'ama', 'Nitab4.5_0000096g0010' => 'nta', 'Nitab4.5_0000202g0030' => 'nta', 'Nitab4.5_0000216g0370' => 'nta', 'Nitab4.5_0000457g0230' => 'nta', 'Nitab4.5_0001702g0170' => 'nta', 'Nitab4.5_0003607g0010' => 'nta', 'Nitab4.5_0004917g0020' => 'nta', 'Nitab4.5_0007059g0010' => 'nta', 'Nitab4.5_0007184g0010' => 'nta', 'Nitab4.5_0007346g0020' => 'nta', 'Nn1g00410' => 'nnu', 'Nn1g01252' => 'nnu', 'Nn2g11168' => 'nnu', 'Nn2g13403' => 'nnu', 'Nn2g13760' => 'nnu', 'Nn4g26380' => 'nnu', 'Oeu000806.2' => 'oeu', 'Oeu005788.1' => 'oeu', 'Oeu006900.3' => 'oeu', 'Oeu007797.1' => 'oeu', 'Oeu011932.1' => 'oeu', 'Oeu022739.1' => 'oeu', 'Oeu037918.1' => 'oeu', 'Oeu055490.2' => 'oeu', 'Os01g0844400' => 'osa', 'Os02g0819100' => 'osa', 'Os03g0804300' => 'osa', 'Os05g0458000' => 'osa', 'Os07g0467800' => 'osa', 'Os12g0602200' => 'osa', 'Peaxi162Scf00013g03444' => 'pax', 'Peaxi162Scf00094g01120' => 'pax', 'Peaxi162Scf00191g01211' => 'pax', 'Peaxi162Scf00238g01110' => 'pax', 'Peaxi162Scf00330g00719' => 'pax', 'Peaxi162Scf00627g00018' => 'pax', 'PGR031G2686' => 'pgr', 'PGR042G0809' => 'pgr', 'PGR142G0193' => 'pgr', 'PGSC0003DMG400011066' => 'stu', 'PGSC0003DMG400012041' => 'stu', 'PGSC0003DMG400013678' => 'stu', 'PGSC0003DMG400023477' => 'stu', 'PGSC0003DMG400025956' => 'stu', 'PGSC0003DMG401019151' => 'stu', 'Phvul.006G116400' => 'pvu', 'Phvul.007G097300' => 'pvu', 'Phvul.010G015000' => 'pvu', 'Phvul.010G083900' => 'pvu', 'Potri.001G117100' => 'ptr', 'Potri.002G147300' => 'ptr', 'Potri.003G115600' => 'ptr', 'Potri.006G087400' => 'ptr', 'Potri.010G226100' => 'ptr', 'Potri.014G069200' => 'ptr', 'Potri.014G104000' => 'ptr', 'Potri.016G100200' => 'ptr', 'Pp3c10_20450' => 'ppa', 'Pp3c1_42400' => 'ppa', 'Pp3c3_24390' => 'ppa', 'Pp3c3_2860' => 'ppa', 'PRCOL_00003193' => 'pco', 'Prupe.2G144500' => 'ppe', 'Prupe.2G195700' => 'ppe', 'Prupe.2G209800' => 'ppe', 'Prupe.5G080000' => 'ppe', 'Prupe.6G257900' => 'ppe', 'Psat3g001160' => 'psa', 'Psat6g181880' => 'psa', 'Psat7g233720' => 'psa', 'PSO063G7587' => 'pso', 'PSO339G2145' => 'pso', 'PSO339G3369' => 'pso', 'PSO478G2747' => 'pso', 'PSO513G0140' => 'pso', 'PSO782G1614' => 'pso', 'PSO782G4889' => 'pso', 'PSO782G5485' => 'pso', 'PSO801G0241' => 'pso', 'QL07p048854' => 'qlo', 'QL08p046745' => 'qlo', 'QL08p052606' => 'qlo', 'QL08p053414' => 'qlo', 'QL08p054868' => 'qlo', 'RcHm_v2.0_Chr1g0350251' => 'rch', 'RcHm_v2.0_Chr1g0360851' => 'rch', 'RcHm_v2.0_Chr1g0362791' => 'rch', 'RcHm_v2.0_Chr3g0466281' => 'rch', 'RcHm_v2.0_Chr7g0201481' => 'rch', 'Rhsim01G0148600' => 'rsi', 'Rhsim05G0194400' => 'rsi', 'Rhsim07G0000700' => 'rsi', 'Rhsim07G0000800' => 'rsi', 'Rhsim07G0027900' => 'rsi', 'Rhsim09G0149500' => 'rsi', 'RhsimUnG0186900' => 'rsi', 'Sabra01G0089900' => 'sbr', 'Sabra02G0114700' => 'sbr', 'Sabra02G0116300' => 'sbr', 'Sabra03G0080100' => 'sbr', 'Sabra08G0024300' => 'sbr', 'Sabra10G0174300' => 'sbr', 'Sabra14G0048900' => 'sbr', 'Sabra14G0076500' => 'sbr', 'SalBow5G2513' => 'sbo', 'Sc01g0002300' => 'sci', 'Sc01g0004450' => 'sci', 'Sc06g0001680' => 'sci', 'Sc23g0003580' => 'sci', 'Sed0000913' => 'sed', 'Sed0001655' => 'sed', 'Sed0007745' => 'sed', 'Sed0010951' => 'sed', 'Sed0017599' => 'sed', 'Sed0021405' => 'sed', 'Sed0022810' => 'sed', 'SEGI_07099' => 'sgi', 'SEGI_11931' => 'sgi', 'SEGI_13187' => 'sgi', 'SEGI_29958' => 'sgi', 'SEGI_36351' => 'sgi', 'SGA_v2.0_scaffold126G33770' => 'sas', 'SGA_v2.0_scaffold153G37003' => 'sas', 'SGA_v2.0_scaffold2G01359' => 'sas', 'SGA_v2.0_scaffold5G03064' => 'sas', 'SGA_v2.0_scaffold95G28903' => 'sas', 'SHI12701' => 'shi', 'SHI26410' => 'shi', 'SHI38997' => 'shi', 'SHI53759' => 'shi', 'SHI53886' => 'shi', 'SHI54714' => 'shi', 'SMO011G0041' => 'smo', 'SMO146G0251' => 'smo', 'SMO160G0004' => 'smo', 'SMO174G0057' => 'smo', 'SMO244G0089' => 'smo', 'SMO296G0011' => 'smo', 'Solyc01g091280.3' => 'sly', 'Solyc05g047610.3' => 'sly', 'Solyc05g047640.3' => 'sly', 'Solyc05g055630.3' => 'sly', 'Solyc10g018160.2' => 'sly', 'Solyc10g084820.2' => 'sly', 'Solyc10g086565.2' => 'sly', 'Sopen01g037030' => 'spe', 'Sopen05g027920' => 'spe', 'Sopen05g034070' => 'spe', 'Sopen10g007260' => 'spe', 'Sopen10g034260' => 'spe', 'Sopen10g035950' => 'spe', 'Sp3g07710' => 'spa', 'Sp4g27420' => 'spa', 'Sp5g02450' => 'spa', 'Sp6g01280' => 'spa', 'Sp6g38480' => 'spa', 'Sp7g20780' => 'spa', 'TAR374G1413' => 'tar', 'TAR623G1777' => 'tar', 'TAR629G2370' => 'tar', 'TAR633G1759' => 'tar', 'TAR636G3387' => 'tar', 'THA.LOC104802447' => 'tha', 'THA.LOC104813916' => 'tha', 'THA.LOC104816423' => 'tha', 'THA.LOC104817246' => 'tha', 'THA.LOC104825895' => 'tha', 'Thecc.01G335200' => 'tca', 'Thecc.01G377400' => 'tca', 'Thecc.03G262200' => 'tca', 'Thecc.05G036800' => 'tca', 'Thecc.10G080500' => 'tca', 'Thecc.10G080800' => 'tca', 'Thhalv10001560m.g' => 'esa', 'Thhalv10006120m.g' => 'esa', 'Thhalv10014375m.g' => 'esa', 'Thhalv10021264m.g' => 'esa', 'Thhalv10028856m.g' => 'esa', 'TPR.G1914' => 'tpr', 'TPR.G4757' => 'tpr', 'TPR.G5595' => 'tpr', 'TWI14G0952' => 'twi', 'TWI14G1307' => 'twi', 'TWI38G2143' => 'twi', 'TWI59G0826' => 'twi', 'TWI77G0527' => 'twi', 'TWI81G0150' => 'twi', 'unitig_21.g21018' => 'ugi', 'unitig_26.g9725' => 'ugi', 'unitig_744.g24653' => 'ugi', 'unitig_749.g13778' => 'ugi', 'unitig_899.g15035' => 'ugi', 'vmacro04296' => 'vma', 'vmacro04852' => 'vma', 'vmacro13404' => 'vma', 'vmacro20169' => 'vma', 'vmacro21014' => 'vma', 'VMungo0331G0237' => 'vmu', 'VMungo0331G0706' => 'vmu', 'VMungo0331G1361' => 'vmu', 'VMungo0331G1489' => 'vmu', 'VMungo0540G1037' => 'vmu', 'VMungo0720G2487' => 'vmu', 'VMungo0720G2721' => 'vmu', 'Zm00001eb086860' => 'zma', 'Zm00001eb104760' => 'zma', 'Zm00001eb148220' => 'zma', 'Zm00001eb259030' => 'zma', 'Zm00001eb289590' => 'zma', 'Zm00001eb420150' => 'zma' ) $gf_id = 'HOM05D000968' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000968' ) $data_identifier = 'HOM05D000968' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 19, 'bol' => (int) 9, 'bra' => (int) 12, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 5, 'ccan' => (int) 7, 'cde' => (int) 5, 'cfa' => (int) 8, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 4, 'dca' => (int) 5, 'din' => (int) 5, 'dzi' => (int) 12, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 25, 'fve' => (int) 5, 'gma' => (int) 9, 'ghi' => (int) 18, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 7, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 5, 'sun' => (int) 2, 'lal' => (int) 9, 'lja' => (int) 5, 'lonja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 9, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 2, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 3, 'stu' => (int) 6, 'pvu' => (int) 4, 'ptr' => (int) 8, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 3, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 1, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 5, 'sas' => (int) 5, 'shi' => (int) 6, 'smo' => (int) 6, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 3, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420150' $species_info = array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ) $local_species = 'ptr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000968', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p31690' => 'bna', 'A03p36040' => 'bna', 'A03p53730' => 'bna', 'A04p01410' => 'bna', 'A05p05420' => 'bna', 'A05p39630' => 'bna', 'A05p39640' => 'bna', 'A09p00970' => 'bna', 'A09p53060' => 'bna', 'A10p31890' => 'bna', 'Aa31LG10G15040' => 'aar', 'Aa31LG1G21090' => 'aar', 'Aa31LG1G26900' => 'aar', 'Aa31LG3G1820' => 'aar', 'Aa31LG5G1100' => 'aar', 'Aa31LG6G4740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2265' => 'aag', 'Actinidia07998' => 'ach', 'Actinidia11266' => 'ach', 'Actinidia12682' => 'ach', 'Actinidia26479' => 'ach', 'Actinidia31406' => 'ach', 'Actinidia32437' => 'ach', 'Actinidia38862' => 'ach', 'Ah.05g174230' => 'amhyb', 'Ah.05g179070' => 'amhyb', 'Ah.05g179090' => 'amhyb', 'Ah.12g059950' => 'amhyb', 'AL3G20480' => 'aly', 'AL4G44520' => 'aly', 'AL5G43110' => 'aly', 'AL6G13890' => 'aly', 'AL6G52620' => 'aly', 'AL7G30830' => 'aly', 'Aqoxy1G00899' => 'aox', 'Aqoxy5G04333' => 'aox', 'Aqoxy7G00641' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3IZ0NN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4EF6AW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W9P8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79GA3M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C43NQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFCU6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G95YVJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCHK29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LU1UG8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX91RN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGB4B1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8DA0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9H7JI' => 'arhy', 'AT3G09320' => 'ath', 'AT3G60800' => 'ath', 'AT4G00840' => 'ath', 'AT4G22750' => 'ath', 'AT5G04270' => 'ath', 'ATR0090G003' => 'atr', 'ATR0559G349' => 'atr', 'ATR0680G261' => 'atr', 'ATR0810G048' => 'atr', 'Atru.chr12.831' => 'acertr', 'Atru.chr5.303' => 'acertr', 'Atru.chr5.748' => 'acertr', 'Atru.chr8.1999' => 'acertr', 'Atru.chr9.1436' => 'acertr', 'AUR62004211' => 'cqu', 'AUR62004548' => 'cqu', 'AUR62013637' => 'cqu', 'AUR62022662' => 'cqu', 'AUR62025777' => 'cqu', 'AUR62042386' => 'cqu', 'BcaB01g02310' => 'bca', 'BcaB01g06062' => 'bca', 'BcaB02g08975' => 'bca', 'BcaB02g08980' => 'bca', 'BcaC01g04228' => 'bca', 'BcaC01g06830' => 'bca', 'BcaC02g10186' => 'bca', 'BcaC02g12214' => 'bca', 'BcaC04g24101' => 'bca', 'BcaC05g29520' => 'bca', 'BcaC05g29661' => 'bca', 'BcaC06g32130' => 'bca', 'BcaC06g32131' => 'bca', 'BcaC07g40601' => 'bca', 'BcaC07g42641' => 'bca', 'BcaNung01038' => 'bca', 'BcaNung01676' => 'bca', 'BcaNung02480' => 'bca', 'BcaNung07376' => 'bca', 'BolC3t16146H' => 'bol', 'BolC3t16637H' => 'bol', 'BolC4t22257H' => 'bol', 'BolC4t24728H' => 'bol', 'BolC5t34517H' => 'bol', 'BolC7t45703H' => 'bol', 'BolC8t51166H' => 'bol', 'BolC9t53038H' => 'bol', 'BolC9t60000H' => 'bol', 'BraA01t01345Z' => 'bra', 'BraA01t01346Z' => 'bra', 'BraA01t01348Z' => 'bra', 'BraA03t12347Z' => 'bra', 'BraA03t12775Z' => 'bra', 'BraA03t14439Z' => 'bra', 'BraA04t15860Z' => 'bra', 'BraA05t19511Z' => 'bra', 'BraA05t22746Z' => 'bra', 'BraA09t35767Z' => 'bra', 'BraA09t40732Z' => 'bra', 'BraA10t45233Z' => 'bra', 'C03p38720' => 'bna', 'C03p43680' => 'bna', 'C04p06350' => 'bna', 'C04p31800' => 'bna', 'C05p58680' => 'bna', 'C07p52110' => 'bna', 'C08p35760' => 'bna', 'C09p01050' => 'bna', 'C09p72600' => 'bna', 'CAN.G106.2' => 'can', 'CAN.G1482.1' => 'can', 'CAN.G324.12' => 'can', 'CAN.G388.20' => 'can', 'CAN.G412.7' => 'can', 'CAN.G694.32' => 'can', 'CAN.G92.12' => 'can', 'CANSAT11G2353' => 'cansat', 'CANSAT21G1398' => 'cansat', 'CANSAT56G2456' => 'cansat', 'CANSAT56G3031' => 'cansat', 'CANSAT56G4539' => 'cansat', 'CARHR083680' => 'chi', 'CARHR171190' => 'chi', 'CARHR209010' => 'chi', 'CARHR229680' => 'chi', 'CARHR249490' => 'chi', 'Carub.0003s0844' => 'cru', 'Carub.0005s2755' => 'cru', 'Carub.0006s0322' => 'cru', 'Carub.0006s3586' => 'cru', 'Carub.0007s1855' => 'cru', 'Ca_07808_v3' => 'car', 'Ca_09535_v3' => 'car', 'Ca_10548_v3' => 'car', 'Ca_19913_v3' => 'car', 'Ca_19916_v3' => 'car', 'Ca_19975_v3' => 'car', 'CBR_g22876' => 'cbr', 'CBR_g22879' => 'cbr', 'CBR_g38491' => 'cbr', 'CBR_g54185' => 'cbr', 'CBR_g54190' => 'cbr', 'Cc02_g11020' => 'ccan', 'Cc02_g23920' => 'ccan', 'Cc02_g39860' => 'ccan', 'Cc02_g39870' => 'ccan', 'Cc03_g06760' => 'ccan', 'Cc06_g02450' => 'ccan', 'Cc09_g09450' => 'ccan', 'CDE02G1959' => 'cde', 'CDE04G0600' => 'cde', 'CDE07G1996' => 'cde', 'CDE07G2078' => 'cde', 'CDE11G0611' => 'cde', 'Cfa001683' => 'cfa', 'Cfa001734' => 'cfa', 'Cfa001737' => 'cfa', 'Cfa003751' => 'cfa', 'Cfa012019' => 'cfa', 'Cfa017353' => 'cfa', 'Cfa017732' => 'cfa', 'Cfa022464' => 'cfa', 'Ciclev10012400m.g' => 'ccl', 'Ciclev10021242m.g' => 'ccl', 'Ciclev10021302m.g' => 'ccl', 'Ciclev10021463m.g' => 'ccl', 'Ciclev10032359m.g' => 'ccl', 'CiPaw.01G081000' => 'cil', 'CiPaw.01G262500' => 'cil', 'CiPaw.01G269800' => 'cil', 'CiPaw.02G168400' => 'cil', 'CiPaw.05G119500' => 'cil', 'CiPaw.11G147300' => 'cil', 'ClCG01G003630' => 'cla', 'ClCG05G000510' => 'cla', 'ClCG05G002300' => 'cla', 'ClCG08G007650' => 'cla', 'ClCG10G021250' => 'cla', 'COL.COLO4_06218' => 'col', 'COL.COLO4_12538' => 'col', 'COL.COLO4_14775' => 'col', 'COL.COLO4_23875' => 'col', 'Cpa.g.sc141.16' => 'cpa', 'Cpa.g.sc169.16' => 'cpa', 'Cpa.g.sc244.4' => 'cpa', 'Cpa.g.sc244.5' => 'cpa', 'Cpa.g.sc29.87' => 'cpa', 'Cpa.g.sc53.115' => 'cpa', 'Cre03.g207502' => 'cre', 'Cre06.g277000' => 'cre', 'Cre09.g394050' => 'cre', 'CsaV3_3G007680' => 'csa', 'CsaV3_3G009710' => 'csa', 'CsaV3_3G034790' => 'csa', 'CsaV3_5G003750' => 'csa', 'CsaV3_6G036620' => 'csa', 'CSS0002288' => 'camsi', 'CSS0011250' => 'camsi', 'CSS0021619' => 'camsi', 'CSS0046701' => 'camsi', 'DCAR_006420' => 'dca', 'DCAR_006865' => 'dca', 'DCAR_008558' => 'dca', 'DCAR_028754' => 'dca', 'DCAR_028755' => 'dca', 'Dinv31218' => 'din', 'Dinv32371' => 'din', 'Dinv34250' => 'din', 'Dinv37156' => 'din', 'Dinv43704' => 'din', 'Duzib093G1811' => 'dzi', 'Duzib106G1622' => 'dzi', 'Duzib114G0504' => 'dzi', 'Duzib128G0338' => 'dzi', 'Duzib128G1577' => 'dzi', 'Duzib133G0104' => 'dzi', 'Duzib133G1080' => 'dzi', 'Duzib138G0324' => 'dzi', 'Duzib138G0394' => 'dzi', 'Duzib205G0122' => 'dzi', 'Duzib268G1020' => 'dzi', 'Duzib268G1359' => 'dzi', 'ECA232G3929' => 'eca', 'ECA236G2210' => 'eca', 'ECA236G2287' => 'eca', 'ECA240G4568' => 'eca', 'ECA247G0894' => 'eca', 'EL10Ac1g00200' => 'bvu', 'EL10Ac1g00886' => 'bvu', 'EL10As1g23091' => 'bvu', 'EL10As1g23092' => 'bvu', 'Eucgr.A01284' => 'egr', 'Eucgr.A01285' => 'egr', 'Eucgr.D02456' => 'egr', 'Eucgr.E00018' => 'egr', 'Eucgr.E01439' => 'egr', 'Eucgr.G02859' => 'egr', 'FAN01G0168' => 'fan', 'FAN01G0453' => 'fan', 'FAN01G2761' => 'fan', 'FAN02G1239' => 'fan', 'FAN03G0645' => 'fan', 'FAN03G2707' => 'fan', 'FAN03G2978' => 'fan', 'FAN04G0227' => 'fan', 'FAN06G0091' => 'fan', 'FAN06G1418' => 'fan', 'FAN06G1512' => 'fan', 'FAN06G1986' => 'fan', 'FAN06G2905' => 'fan', 'FAN06G4325' => 'fan', 'FAN08G0033' => 'fan', 'FAN09G0642' => 'fan', 'FAN10G1763' => 'fan', 'FAN10G2026' => 'fan', 'FAN10G2513' => 'fan', 'FAN10G3402' => 'fan', 'FAN10G3564' => 'fan', 'FAN10G3987' => 'fan', 'FAN13G1490' => 'fan', 'FAN14G5857' => 'fan', 'FAN18G1188' => 'fan', 'FvH4_5g00750' => 'fve', 'FvH4_6g13410' => 'fve', 'FvH4_7g11740' => 'fve', 'FvH4_7g17410' => 'fve', 'FvH4_7g18860' => 'fve', 'Glyma.01G099100' => 'gma', 'Glyma.01G142300' => 'gma', 'Glyma.03G025500' => 'gma', 'Glyma.03G069700' => 'gma', 'Glyma.03G260000' => 'gma', 'Glyma.09G269800' => 'gma', 'Glyma.10G208700' => 'gma', 'Glyma.18G220400' => 'gma', 'Glyma.20G182000' => 'gma', 'Gohir.A01G221726' => 'ghi', 'Gohir.A07G134600' => 'ghi', 'Gohir.A07G146000' => 'ghi', 'Gohir.A08G173900' => 'ghi', 'Gohir.A09G194900' => 'ghi', 'Gohir.A10G204100' => 'ghi', 'Gohir.A11G080600' => 'ghi', 'Gohir.A11G327500' => 'ghi', 'Gohir.A12G101800' => 'ghi', 'Gohir.D01G211200' => 'ghi', 'Gohir.D07G139200' => 'ghi', 'Gohir.D07G152100' => 'ghi', 'Gohir.D08G192600' => 'ghi', 'Gohir.D09G189200' => 'ghi', 'Gohir.D10G212000' => 'ghi', 'Gohir.D11G085200' => 'ghi', 'Gohir.D11G346400' => 'ghi', 'Gohir.D12G104800' => 'ghi', 'Gorai.001G151300' => 'gra', 'Gorai.001G174100' => 'gra', 'Gorai.002G257000' => 'gra', 'Gorai.004G202600' => 'gra', 'Gorai.007G090900' => 'gra', 'Gorai.007G376700' => 'gra', 'Gorai.008G114100' => 'gra', 'Gorai.011G237900' => 'gra', 'GSVIVG01005450001' => 'vvi', 'GSVIVG01016232001' => 'vvi', 'GSVIVG01026157001' => 'vvi', 'GSVIVG01027419001' => 'vvi', 'GSVIVG01027631001' => 'vvi', 'GSVIVG01034143001' => 'vvi', 'HanXRQChr03g0093921' => 'han', 'HanXRQChr04g0120001' => 'han', 'HanXRQChr04g0122561' => 'han', 'HanXRQChr09g0246851' => 'han', 'HanXRQChr10g0293311' => 'han', 'HanXRQChr13g0425231' => 'han', 'HanXRQChr16g0532571' => 'han', 'Haze_09050' => 'cav', 'Haze_15715' => 'cav', 'Haze_15716' => 'cav', 'Haze_16803' => 'cav', 'Haze_16850' => 'cav', 'Hma1.2p1_0301F.1_g118655' => 'hma', 'Hma1.2p1_0309F.1_g120590' => 'hma', 'Hma1.2p1_0936F.1_g238900' => 'hma', 'Hma1.2p1_3552F.1_g336740' => 'hma', 'HPP92_003520' => 'vpl', 'HPP92_006628' => 'vpl', 'HPP92_006645' => 'vpl', 'HPP92_014669' => 'vpl', 'HPP92_015077' => 'vpl', 'Hund16742' => 'sun', 'Hund17022' => 'sun', 'Lalb_Chr02g0152131' => 'lal', 'Lalb_Chr05g0225371' => 'lal', 'Lalb_Chr07g0189841' => 'lal', 'Lalb_Chr07g0192961' => 'lal', 'Lalb_Chr12g0208221' => 'lal', 'Lalb_Chr13g0291211' => 'lal', 'Lalb_Chr13g0291781' => 'lal', 'Lalb_Chr18g0044651' => 'lal', 'Lalb_Chr21g0313731' => 'lal', 'Lj1g0022533' => 'lja', 'Lj2A18T50' => 'lonja', 'Lj2A92G93' => 'lonja', 'Lj3A965T73' => 'lonja', 'Lj3g0000673' => 'lja', 'Lj3g0002666' => 'lja', 'Lj4g0016985' => 'lja', 'Lj5g0003625' => 'lja', 'Lj7A529G36' => 'lonja', 'Lj9A569T49' => 'lonja', 'Lj9A604T63' => 'lonja', 'Lsat_1_v5_gn_3_132060' => 'lsa', 'Lsat_1_v5_gn_4_68941' => 'lsa', 'Lsat_1_v5_gn_5_95580' => 'lsa', 'Lsat_1_v5_gn_7_161' => 'lsa', 'Lsat_1_v5_gn_7_7041' => 'lsa', 'Lsat_1_v5_gn_9_33481' => 'lsa', 'Lsat_1_v5_gn_9_68260' => 'lsa', 'Manes.01G073100' => 'mes', 'Manes.01G266300' => 'mes', 'Manes.02G033300' => 'mes', 'Manes.05G017900' => 'mes', 'Manes.05G046100' => 'mes', 'Manes.08G080900' => 'mes', 'Manes.10G049400' => 'mes', 'Mapoly0009s0186' => 'mpo', 'Mapoly0036s0118' => 'mpo', 'Mapoly0101s0046' => 'mpo', 'MBI04_g30218_MAGBIO' => 'mbi', 'MBI04_g35564_MAGBIO' => 'mbi', 'MBI12_g34011_MAGBIO' => 'mbi', 'MBI14_g04655_MAGBIO' => 'mbi', 'MCO07G653' => 'mco', 'MCO10G173' => 'mco', 'MD01G1087100' => 'mdo', 'MD01G1104200' => 'mdo', 'MD02G1205100' => 'mdo', 'MD04G1079200' => 'mdo', 'MD04G1131400' => 'mdo', 'MD07G1121600' => 'mdo', 'MD07G1157300' => 'mdo', 'MD07G1171000' => 'mdo', 'MD12G1144500' => 'mdo', 'Medtr1g094610' => 'mtr', 'Medtr4g021795' => 'mtr', 'Medtr4g023760' => 'mtr', 'Medtr7g118050' => 'mtr', 'MELO3C005582.2' => 'cme', 'MELO3C005989.2' => 'cme', 'MELO3C006192.2' => 'cme', 'MELO3C009248.2' => 'cme', 'MELO3C019817.2' => 'cme', 'Migut.B01625' => 'egut', 'Migut.B01915' => 'egut', 'Migut.F01721' => 'egut', 'Migut.J00314' => 'egut', 'MSTRG.20742' => 'ama', 'MSTRG.8134' => 'ama', 'Nitab4.5_0000096g0010' => 'nta', 'Nitab4.5_0000202g0030' => 'nta', 'Nitab4.5_0000216g0370' => 'nta', 'Nitab4.5_0000457g0230' => 'nta', 'Nitab4.5_0001702g0170' => 'nta', 'Nitab4.5_0003607g0010' => 'nta', 'Nitab4.5_0004917g0020' => 'nta', 'Nitab4.5_0007059g0010' => 'nta', 'Nitab4.5_0007184g0010' => 'nta', 'Nitab4.5_0007346g0020' => 'nta', 'Nn1g00410' => 'nnu', 'Nn1g01252' => 'nnu', 'Nn2g11168' => 'nnu', 'Nn2g13403' => 'nnu', 'Nn2g13760' => 'nnu', 'Nn4g26380' => 'nnu', 'Oeu000806.2' => 'oeu', 'Oeu005788.1' => 'oeu', 'Oeu006900.3' => 'oeu', 'Oeu007797.1' => 'oeu', 'Oeu011932.1' => 'oeu', 'Oeu022739.1' => 'oeu', 'Oeu037918.1' => 'oeu', 'Oeu055490.2' => 'oeu', 'Os01g0844400' => 'osa', 'Os02g0819100' => 'osa', 'Os03g0804300' => 'osa', 'Os05g0458000' => 'osa', 'Os07g0467800' => 'osa', 'Os12g0602200' => 'osa', 'Peaxi162Scf00013g03444' => 'pax', 'Peaxi162Scf00094g01120' => 'pax', 'Peaxi162Scf00191g01211' => 'pax', 'Peaxi162Scf00238g01110' => 'pax', 'Peaxi162Scf00330g00719' => 'pax', 'Peaxi162Scf00627g00018' => 'pax', 'PGR031G2686' => 'pgr', 'PGR042G0809' => 'pgr', 'PGR142G0193' => 'pgr', 'PGSC0003DMG400011066' => 'stu', 'PGSC0003DMG400012041' => 'stu', 'PGSC0003DMG400013678' => 'stu', 'PGSC0003DMG400023477' => 'stu', 'PGSC0003DMG400025956' => 'stu', 'PGSC0003DMG401019151' => 'stu', 'Phvul.006G116400' => 'pvu', 'Phvul.007G097300' => 'pvu', 'Phvul.010G015000' => 'pvu', 'Phvul.010G083900' => 'pvu', 'Potri.001G117100' => 'ptr', 'Potri.002G147300' => 'ptr', 'Potri.003G115600' => 'ptr', 'Potri.006G087400' => 'ptr', 'Potri.010G226100' => 'ptr', 'Potri.014G069200' => 'ptr', 'Potri.014G104000' => 'ptr', 'Potri.016G100200' => 'ptr', 'Pp3c10_20450' => 'ppa', 'Pp3c1_42400' => 'ppa', 'Pp3c3_24390' => 'ppa', 'Pp3c3_2860' => 'ppa', 'PRCOL_00003193' => 'pco', 'Prupe.2G144500' => 'ppe', 'Prupe.2G195700' => 'ppe', 'Prupe.2G209800' => 'ppe', 'Prupe.5G080000' => 'ppe', 'Prupe.6G257900' => 'ppe', 'Psat3g001160' => 'psa', 'Psat6g181880' => 'psa', 'Psat7g233720' => 'psa', 'PSO063G7587' => 'pso', 'PSO339G2145' => 'pso', 'PSO339G3369' => 'pso', 'PSO478G2747' => 'pso', 'PSO513G0140' => 'pso', 'PSO782G1614' => 'pso', 'PSO782G4889' => 'pso', 'PSO782G5485' => 'pso', 'PSO801G0241' => 'pso', 'QL07p048854' => 'qlo', 'QL08p046745' => 'qlo', 'QL08p052606' => 'qlo', 'QL08p053414' => 'qlo', 'QL08p054868' => 'qlo', 'RcHm_v2.0_Chr1g0350251' => 'rch', 'RcHm_v2.0_Chr1g0360851' => 'rch', 'RcHm_v2.0_Chr1g0362791' => 'rch', 'RcHm_v2.0_Chr3g0466281' => 'rch', 'RcHm_v2.0_Chr7g0201481' => 'rch', 'Rhsim01G0148600' => 'rsi', 'Rhsim05G0194400' => 'rsi', 'Rhsim07G0000700' => 'rsi', 'Rhsim07G0000800' => 'rsi', 'Rhsim07G0027900' => 'rsi', 'Rhsim09G0149500' => 'rsi', 'RhsimUnG0186900' => 'rsi', 'Sabra01G0089900' => 'sbr', 'Sabra02G0114700' => 'sbr', 'Sabra02G0116300' => 'sbr', 'Sabra03G0080100' => 'sbr', 'Sabra08G0024300' => 'sbr', 'Sabra10G0174300' => 'sbr', 'Sabra14G0048900' => 'sbr', 'Sabra14G0076500' => 'sbr', 'SalBow5G2513' => 'sbo', 'Sc01g0002300' => 'sci', 'Sc01g0004450' => 'sci', 'Sc06g0001680' => 'sci', 'Sc23g0003580' => 'sci', 'Sed0000913' => 'sed', 'Sed0001655' => 'sed', 'Sed0007745' => 'sed', 'Sed0010951' => 'sed', 'Sed0017599' => 'sed', 'Sed0021405' => 'sed', 'Sed0022810' => 'sed', 'SEGI_07099' => 'sgi', 'SEGI_11931' => 'sgi', 'SEGI_13187' => 'sgi', 'SEGI_29958' => 'sgi', 'SEGI_36351' => 'sgi', 'SGA_v2.0_scaffold126G33770' => 'sas', 'SGA_v2.0_scaffold153G37003' => 'sas', 'SGA_v2.0_scaffold2G01359' => 'sas', 'SGA_v2.0_scaffold5G03064' => 'sas', 'SGA_v2.0_scaffold95G28903' => 'sas', 'SHI12701' => 'shi', 'SHI26410' => 'shi', 'SHI38997' => 'shi', 'SHI53759' => 'shi', 'SHI53886' => 'shi', 'SHI54714' => 'shi', 'SMO011G0041' => 'smo', 'SMO146G0251' => 'smo', 'SMO160G0004' => 'smo', 'SMO174G0057' => 'smo', 'SMO244G0089' => 'smo', 'SMO296G0011' => 'smo', 'Solyc01g091280.3' => 'sly', 'Solyc05g047610.3' => 'sly', 'Solyc05g047640.3' => 'sly', 'Solyc05g055630.3' => 'sly', 'Solyc10g018160.2' => 'sly', 'Solyc10g084820.2' => 'sly', 'Solyc10g086565.2' => 'sly', 'Sopen01g037030' => 'spe', 'Sopen05g027920' => 'spe', 'Sopen05g034070' => 'spe', 'Sopen10g007260' => 'spe', 'Sopen10g034260' => 'spe', 'Sopen10g035950' => 'spe', 'Sp3g07710' => 'spa', 'Sp4g27420' => 'spa', 'Sp5g02450' => 'spa', 'Sp6g01280' => 'spa', 'Sp6g38480' => 'spa', 'Sp7g20780' => 'spa', 'TAR374G1413' => 'tar', 'TAR623G1777' => 'tar', 'TAR629G2370' => 'tar', 'TAR633G1759' => 'tar', 'TAR636G3387' => 'tar', 'THA.LOC104802447' => 'tha', 'THA.LOC104813916' => 'tha', 'THA.LOC104816423' => 'tha', 'THA.LOC104817246' => 'tha', 'THA.LOC104825895' => 'tha', 'Thecc.01G335200' => 'tca', 'Thecc.01G377400' => 'tca', 'Thecc.03G262200' => 'tca', 'Thecc.05G036800' => 'tca', 'Thecc.10G080500' => 'tca', 'Thecc.10G080800' => 'tca', 'Thhalv10001560m.g' => 'esa', 'Thhalv10006120m.g' => 'esa', 'Thhalv10014375m.g' => 'esa', 'Thhalv10021264m.g' => 'esa', 'Thhalv10028856m.g' => 'esa', 'TPR.G1914' => 'tpr', 'TPR.G4757' => 'tpr', 'TPR.G5595' => 'tpr', 'TWI14G0952' => 'twi', 'TWI14G1307' => 'twi', 'TWI38G2143' => 'twi', 'TWI59G0826' => 'twi', 'TWI77G0527' => 'twi', 'TWI81G0150' => 'twi', 'unitig_21.g21018' => 'ugi', 'unitig_26.g9725' => 'ugi', 'unitig_744.g24653' => 'ugi', 'unitig_749.g13778' => 'ugi', 'unitig_899.g15035' => 'ugi', 'vmacro04296' => 'vma', 'vmacro04852' => 'vma', 'vmacro13404' => 'vma', 'vmacro20169' => 'vma', 'vmacro21014' => 'vma', 'VMungo0331G0237' => 'vmu', 'VMungo0331G0706' => 'vmu', 'VMungo0331G1361' => 'vmu', 'VMungo0331G1489' => 'vmu', 'VMungo0540G1037' => 'vmu', 'VMungo0720G2487' => 'vmu', 'VMungo0720G2721' => 'vmu', 'Zm00001eb086860' => 'zma', 'Zm00001eb104760' => 'zma', 'Zm00001eb148220' => 'zma', 'Zm00001eb259030' => 'zma', 'Zm00001eb289590' => 'zma', 'Zm00001eb420150' => 'zma' ), 'gf_id' => 'HOM05D000968', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000968' ), 'data_identifier' => 'HOM05D000968', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000968', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p31690' => 'bna', 'A03p36040' => 'bna', 'A03p53730' => 'bna', 'A04p01410' => 'bna', 'A05p05420' => 'bna', 'A05p39630' => 'bna', 'A05p39640' => 'bna', 'A09p00970' => 'bna', 'A09p53060' => 'bna', 'A10p31890' => 'bna', 'Aa31LG10G15040' => 'aar', 'Aa31LG1G21090' => 'aar', 'Aa31LG1G26900' => 'aar', 'Aa31LG3G1820' => 'aar', 'Aa31LG5G1100' => 'aar', 'Aa31LG6G4740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2265' => 'aag', 'Actinidia07998' => 'ach', 'Actinidia11266' => 'ach', 'Actinidia12682' => 'ach', 'Actinidia26479' => 'ach', 'Actinidia31406' => 'ach', 'Actinidia32437' => 'ach', 'Actinidia38862' => 'ach', 'Ah.05g174230' => 'amhyb', 'Ah.05g179070' => 'amhyb', 'Ah.05g179090' => 'amhyb', 'Ah.12g059950' => 'amhyb', 'AL3G20480' => 'aly', 'AL4G44520' => 'aly', 'AL5G43110' => 'aly', 'AL6G13890' => 'aly', 'AL6G52620' => 'aly', 'AL7G30830' => 'aly', 'Aqoxy1G00899' => 'aox', 'Aqoxy5G04333' => 'aox', 'Aqoxy7G00641' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3IZ0NN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4EF6AW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W9P8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79GA3M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C43NQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFCU6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G95YVJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCHK29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LU1UG8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX91RN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGB4B1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8DA0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9H7JI' => 'arhy', 'AT3G09320' => 'ath', 'AT3G60800' => 'ath', 'AT4G00840' => 'ath', 'AT4G22750' => 'ath', 'AT5G04270' => 'ath', 'ATR0090G003' => 'atr', 'ATR0559G349' => 'atr', 'ATR0680G261' => 'atr', 'ATR0810G048' => 'atr', 'Atru.chr12.831' => 'acertr', 'Atru.chr5.303' => 'acertr', 'Atru.chr5.748' => 'acertr', 'Atru.chr8.1999' => 'acertr', 'Atru.chr9.1436' => 'acertr', 'AUR62004211' => 'cqu', 'AUR62004548' => 'cqu', 'AUR62013637' => 'cqu', 'AUR62022662' => 'cqu', 'AUR62025777' => 'cqu', 'AUR62042386' => 'cqu', 'BcaB01g02310' => 'bca', 'BcaB01g06062' => 'bca', 'BcaB02g08975' => 'bca', 'BcaB02g08980' => 'bca', 'BcaC01g04228' => 'bca', 'BcaC01g06830' => 'bca', 'BcaC02g10186' => 'bca', 'BcaC02g12214' => 'bca', 'BcaC04g24101' => 'bca', 'BcaC05g29520' => 'bca', 'BcaC05g29661' => 'bca', 'BcaC06g32130' => 'bca', 'BcaC06g32131' => 'bca', 'BcaC07g40601' => 'bca', 'BcaC07g42641' => 'bca', 'BcaNung01038' => 'bca', 'BcaNung01676' => 'bca', 'BcaNung02480' => 'bca', 'BcaNung07376' => 'bca', 'BolC3t16146H' => 'bol', 'BolC3t16637H' => 'bol', 'BolC4t22257H' => 'bol', 'BolC4t24728H' => 'bol', 'BolC5t34517H' => 'bol', 'BolC7t45703H' => 'bol', 'BolC8t51166H' => 'bol', 'BolC9t53038H' => 'bol', 'BolC9t60000H' => 'bol', 'BraA01t01345Z' => 'bra', 'BraA01t01346Z' => 'bra', 'BraA01t01348Z' => 'bra', 'BraA03t12347Z' => 'bra', 'BraA03t12775Z' => 'bra', 'BraA03t14439Z' => 'bra', 'BraA04t15860Z' => 'bra', 'BraA05t19511Z' => 'bra', 'BraA05t22746Z' => 'bra', 'BraA09t35767Z' => 'bra', 'BraA09t40732Z' => 'bra', 'BraA10t45233Z' => 'bra', 'C03p38720' => 'bna', 'C03p43680' => 'bna', 'C04p06350' => 'bna', 'C04p31800' => 'bna', 'C05p58680' => 'bna', 'C07p52110' => 'bna', 'C08p35760' => 'bna', 'C09p01050' => 'bna', 'C09p72600' => 'bna', 'CAN.G106.2' => 'can', 'CAN.G1482.1' => 'can', 'CAN.G324.12' => 'can', 'CAN.G388.20' => 'can', 'CAN.G412.7' => 'can', 'CAN.G694.32' => 'can', 'CAN.G92.12' => 'can', 'CANSAT11G2353' => 'cansat', 'CANSAT21G1398' => 'cansat', 'CANSAT56G2456' => 'cansat', 'CANSAT56G3031' => 'cansat', 'CANSAT56G4539' => 'cansat', 'CARHR083680' => 'chi', 'CARHR171190' => 'chi', 'CARHR209010' => 'chi', 'CARHR229680' => 'chi', 'CARHR249490' => 'chi', 'Carub.0003s0844' => 'cru', 'Carub.0005s2755' => 'cru', 'Carub.0006s0322' => 'cru', 'Carub.0006s3586' => 'cru', 'Carub.0007s1855' => 'cru', 'Ca_07808_v3' => 'car', 'Ca_09535_v3' => 'car', 'Ca_10548_v3' => 'car', 'Ca_19913_v3' => 'car', 'Ca_19916_v3' => 'car', 'Ca_19975_v3' => 'car', 'CBR_g22876' => 'cbr', 'CBR_g22879' => 'cbr', 'CBR_g38491' => 'cbr', 'CBR_g54185' => 'cbr', 'CBR_g54190' => 'cbr', 'Cc02_g11020' => 'ccan', 'Cc02_g23920' => 'ccan', 'Cc02_g39860' => 'ccan', 'Cc02_g39870' => 'ccan', 'Cc03_g06760' => 'ccan', 'Cc06_g02450' => 'ccan', 'Cc09_g09450' => 'ccan', 'CDE02G1959' => 'cde', 'CDE04G0600' => 'cde', 'CDE07G1996' => 'cde', 'CDE07G2078' => 'cde', 'CDE11G0611' => 'cde', 'Cfa001683' => 'cfa', 'Cfa001734' => 'cfa', 'Cfa001737' => 'cfa', 'Cfa003751' => 'cfa', 'Cfa012019' => 'cfa', 'Cfa017353' => 'cfa', 'Cfa017732' => 'cfa', 'Cfa022464' => 'cfa', 'Ciclev10012400m.g' => 'ccl', 'Ciclev10021242m.g' => 'ccl', 'Ciclev10021302m.g' => 'ccl', 'Ciclev10021463m.g' => 'ccl', 'Ciclev10032359m.g' => 'ccl', 'CiPaw.01G081000' => 'cil', 'CiPaw.01G262500' => 'cil', 'CiPaw.01G269800' => 'cil', 'CiPaw.02G168400' => 'cil', 'CiPaw.05G119500' => 'cil', 'CiPaw.11G147300' => 'cil', 'ClCG01G003630' => 'cla', 'ClCG05G000510' => 'cla', 'ClCG05G002300' => 'cla', 'ClCG08G007650' => 'cla', 'ClCG10G021250' => 'cla', 'COL.COLO4_06218' => 'col', 'COL.COLO4_12538' => 'col', 'COL.COLO4_14775' => 'col', 'COL.COLO4_23875' => 'col', 'Cpa.g.sc141.16' => 'cpa', 'Cpa.g.sc169.16' => 'cpa', 'Cpa.g.sc244.4' => 'cpa', 'Cpa.g.sc244.5' => 'cpa', 'Cpa.g.sc29.87' => 'cpa', 'Cpa.g.sc53.115' => 'cpa', 'Cre03.g207502' => 'cre', 'Cre06.g277000' => 'cre', 'Cre09.g394050' => 'cre', 'CsaV3_3G007680' => 'csa', 'CsaV3_3G009710' => 'csa', 'CsaV3_3G034790' => 'csa', 'CsaV3_5G003750' => 'csa', 'CsaV3_6G036620' => 'csa', 'CSS0002288' => 'camsi', 'CSS0011250' => 'camsi', 'CSS0021619' => 'camsi', 'CSS0046701' => 'camsi', 'DCAR_006420' => 'dca', 'DCAR_006865' => 'dca', 'DCAR_008558' => 'dca', 'DCAR_028754' => 'dca', 'DCAR_028755' => 'dca', 'Dinv31218' => 'din', 'Dinv32371' => 'din', 'Dinv34250' => 'din', 'Dinv37156' => 'din', 'Dinv43704' => 'din', 'Duzib093G1811' => 'dzi', 'Duzib106G1622' => 'dzi', 'Duzib114G0504' => 'dzi', 'Duzib128G0338' => 'dzi', 'Duzib128G1577' => 'dzi', 'Duzib133G0104' => 'dzi', 'Duzib133G1080' => 'dzi', 'Duzib138G0324' => 'dzi', 'Duzib138G0394' => 'dzi', 'Duzib205G0122' => 'dzi', 'Duzib268G1020' => 'dzi', 'Duzib268G1359' => 'dzi', 'ECA232G3929' => 'eca', 'ECA236G2210' => 'eca', 'ECA236G2287' => 'eca', 'ECA240G4568' => 'eca', 'ECA247G0894' => 'eca', 'EL10Ac1g00200' => 'bvu', 'EL10Ac1g00886' => 'bvu', 'EL10As1g23091' => 'bvu', 'EL10As1g23092' => 'bvu', 'Eucgr.A01284' => 'egr', 'Eucgr.A01285' => 'egr', 'Eucgr.D02456' => 'egr', 'Eucgr.E00018' => 'egr', 'Eucgr.E01439' => 'egr', 'Eucgr.G02859' => 'egr', 'FAN01G0168' => 'fan', 'FAN01G0453' => 'fan', 'FAN01G2761' => 'fan', 'FAN02G1239' => 'fan', 'FAN03G0645' => 'fan', 'FAN03G2707' => 'fan', 'FAN03G2978' => 'fan', 'FAN04G0227' => 'fan', 'FAN06G0091' => 'fan', 'FAN06G1418' => 'fan', 'FAN06G1512' => 'fan', 'FAN06G1986' => 'fan', 'FAN06G2905' => 'fan', 'FAN06G4325' => 'fan', 'FAN08G0033' => 'fan', 'FAN09G0642' => 'fan', 'FAN10G1763' => 'fan', 'FAN10G2026' => 'fan', 'FAN10G2513' => 'fan', 'FAN10G3402' => 'fan', 'FAN10G3564' => 'fan', 'FAN10G3987' => 'fan', 'FAN13G1490' => 'fan', 'FAN14G5857' => 'fan', 'FAN18G1188' => 'fan', 'FvH4_5g00750' => 'fve', 'FvH4_6g13410' => 'fve', 'FvH4_7g11740' => 'fve', 'FvH4_7g17410' => 'fve', 'FvH4_7g18860' => 'fve', 'Glyma.01G099100' => 'gma', 'Glyma.01G142300' => 'gma', 'Glyma.03G025500' => 'gma', 'Glyma.03G069700' => 'gma', 'Glyma.03G260000' => 'gma', 'Glyma.09G269800' => 'gma', 'Glyma.10G208700' => 'gma', 'Glyma.18G220400' => 'gma', 'Glyma.20G182000' => 'gma', 'Gohir.A01G221726' => 'ghi', 'Gohir.A07G134600' => 'ghi', 'Gohir.A07G146000' => 'ghi', 'Gohir.A08G173900' => 'ghi', 'Gohir.A09G194900' => 'ghi', 'Gohir.A10G204100' => 'ghi', 'Gohir.A11G080600' => 'ghi', 'Gohir.A11G327500' => 'ghi', 'Gohir.A12G101800' => 'ghi', 'Gohir.D01G211200' => 'ghi', 'Gohir.D07G139200' => 'ghi', 'Gohir.D07G152100' => 'ghi', 'Gohir.D08G192600' => 'ghi', 'Gohir.D09G189200' => 'ghi', 'Gohir.D10G212000' => 'ghi', 'Gohir.D11G085200' => 'ghi', 'Gohir.D11G346400' => 'ghi', 'Gohir.D12G104800' => 'ghi', 'Gorai.001G151300' => 'gra', 'Gorai.001G174100' => 'gra', 'Gorai.002G257000' => 'gra', 'Gorai.004G202600' => 'gra', 'Gorai.007G090900' => 'gra', 'Gorai.007G376700' => 'gra', 'Gorai.008G114100' => 'gra', 'Gorai.011G237900' => 'gra', 'GSVIVG01005450001' => 'vvi', 'GSVIVG01016232001' => 'vvi', 'GSVIVG01026157001' => 'vvi', 'GSVIVG01027419001' => 'vvi', 'GSVIVG01027631001' => 'vvi', 'GSVIVG01034143001' => 'vvi', 'HanXRQChr03g0093921' => 'han', 'HanXRQChr04g0120001' => 'han', 'HanXRQChr04g0122561' => 'han', 'HanXRQChr09g0246851' => 'han', 'HanXRQChr10g0293311' => 'han', 'HanXRQChr13g0425231' => 'han', 'HanXRQChr16g0532571' => 'han', 'Haze_09050' => 'cav', 'Haze_15715' => 'cav', 'Haze_15716' => 'cav', 'Haze_16803' => 'cav', 'Haze_16850' => 'cav', 'Hma1.2p1_0301F.1_g118655' => 'hma', 'Hma1.2p1_0309F.1_g120590' => 'hma', 'Hma1.2p1_0936F.1_g238900' => 'hma', 'Hma1.2p1_3552F.1_g336740' => 'hma', 'HPP92_003520' => 'vpl', 'HPP92_006628' => 'vpl', 'HPP92_006645' => 'vpl', 'HPP92_014669' => 'vpl', 'HPP92_015077' => 'vpl', 'Hund16742' => 'sun', 'Hund17022' => 'sun', 'Lalb_Chr02g0152131' => 'lal', 'Lalb_Chr05g0225371' => 'lal', 'Lalb_Chr07g0189841' => 'lal', 'Lalb_Chr07g0192961' => 'lal', 'Lalb_Chr12g0208221' => 'lal', 'Lalb_Chr13g0291211' => 'lal', 'Lalb_Chr13g0291781' => 'lal', 'Lalb_Chr18g0044651' => 'lal', 'Lalb_Chr21g0313731' => 'lal', 'Lj1g0022533' => 'lja', 'Lj2A18T50' => 'lonja', 'Lj2A92G93' => 'lonja', 'Lj3A965T73' => 'lonja', 'Lj3g0000673' => 'lja', 'Lj3g0002666' => 'lja', 'Lj4g0016985' => 'lja', 'Lj5g0003625' => 'lja', 'Lj7A529G36' => 'lonja', 'Lj9A569T49' => 'lonja', 'Lj9A604T63' => 'lonja', 'Lsat_1_v5_gn_3_132060' => 'lsa', 'Lsat_1_v5_gn_4_68941' => 'lsa', 'Lsat_1_v5_gn_5_95580' => 'lsa', 'Lsat_1_v5_gn_7_161' => 'lsa', 'Lsat_1_v5_gn_7_7041' => 'lsa', 'Lsat_1_v5_gn_9_33481' => 'lsa', 'Lsat_1_v5_gn_9_68260' => 'lsa', 'Manes.01G073100' => 'mes', 'Manes.01G266300' => 'mes', 'Manes.02G033300' => 'mes', 'Manes.05G017900' => 'mes', 'Manes.05G046100' => 'mes', 'Manes.08G080900' => 'mes', 'Manes.10G049400' => 'mes', 'Mapoly0009s0186' => 'mpo', 'Mapoly0036s0118' => 'mpo', 'Mapoly0101s0046' => 'mpo', 'MBI04_g30218_MAGBIO' => 'mbi', 'MBI04_g35564_MAGBIO' => 'mbi', 'MBI12_g34011_MAGBIO' => 'mbi', 'MBI14_g04655_MAGBIO' => 'mbi', 'MCO07G653' => 'mco', 'MCO10G173' => 'mco', 'MD01G1087100' => 'mdo', 'MD01G1104200' => 'mdo', 'MD02G1205100' => 'mdo', 'MD04G1079200' => 'mdo', 'MD04G1131400' => 'mdo', 'MD07G1121600' => 'mdo', 'MD07G1157300' => 'mdo', 'MD07G1171000' => 'mdo', 'MD12G1144500' => 'mdo', 'Medtr1g094610' => 'mtr', 'Medtr4g021795' => 'mtr', 'Medtr4g023760' => 'mtr', 'Medtr7g118050' => 'mtr', 'MELO3C005582.2' => 'cme', 'MELO3C005989.2' => 'cme', 'MELO3C006192.2' => 'cme', 'MELO3C009248.2' => 'cme', 'MELO3C019817.2' => 'cme', 'Migut.B01625' => 'egut', 'Migut.B01915' => 'egut', 'Migut.F01721' => 'egut', 'Migut.J00314' => 'egut', 'MSTRG.20742' => 'ama', 'MSTRG.8134' => 'ama', 'Nitab4.5_0000096g0010' => 'nta', 'Nitab4.5_0000202g0030' => 'nta', 'Nitab4.5_0000216g0370' => 'nta', 'Nitab4.5_0000457g0230' => 'nta', 'Nitab4.5_0001702g0170' => 'nta', 'Nitab4.5_0003607g0010' => 'nta', 'Nitab4.5_0004917g0020' => 'nta', 'Nitab4.5_0007059g0010' => 'nta', 'Nitab4.5_0007184g0010' => 'nta', 'Nitab4.5_0007346g0020' => 'nta', 'Nn1g00410' => 'nnu', 'Nn1g01252' => 'nnu', 'Nn2g11168' => 'nnu', 'Nn2g13403' => 'nnu', 'Nn2g13760' => 'nnu', 'Nn4g26380' => 'nnu', 'Oeu000806.2' => 'oeu', 'Oeu005788.1' => 'oeu', 'Oeu006900.3' => 'oeu', 'Oeu007797.1' => 'oeu', 'Oeu011932.1' => 'oeu', 'Oeu022739.1' => 'oeu', 'Oeu037918.1' => 'oeu', 'Oeu055490.2' => 'oeu', 'Os01g0844400' => 'osa', 'Os02g0819100' => 'osa', 'Os03g0804300' => 'osa', 'Os05g0458000' => 'osa', 'Os07g0467800' => 'osa', 'Os12g0602200' => 'osa', 'Peaxi162Scf00013g03444' => 'pax', 'Peaxi162Scf00094g01120' => 'pax', 'Peaxi162Scf00191g01211' => 'pax', 'Peaxi162Scf00238g01110' => 'pax', 'Peaxi162Scf00330g00719' => 'pax', 'Peaxi162Scf00627g00018' => 'pax', 'PGR031G2686' => 'pgr', 'PGR042G0809' => 'pgr', 'PGR142G0193' => 'pgr', 'PGSC0003DMG400011066' => 'stu', 'PGSC0003DMG400012041' => 'stu', 'PGSC0003DMG400013678' => 'stu', 'PGSC0003DMG400023477' => 'stu', 'PGSC0003DMG400025956' => 'stu', 'PGSC0003DMG401019151' => 'stu', 'Phvul.006G116400' => 'pvu', 'Phvul.007G097300' => 'pvu', 'Phvul.010G015000' => 'pvu', 'Phvul.010G083900' => 'pvu', 'Potri.001G117100' => 'ptr', 'Potri.002G147300' => 'ptr', 'Potri.003G115600' => 'ptr', 'Potri.006G087400' => 'ptr', 'Potri.010G226100' => 'ptr', 'Potri.014G069200' => 'ptr', 'Potri.014G104000' => 'ptr', 'Potri.016G100200' => 'ptr', 'Pp3c10_20450' => 'ppa', 'Pp3c1_42400' => 'ppa', 'Pp3c3_24390' => 'ppa', 'Pp3c3_2860' => 'ppa', 'PRCOL_00003193' => 'pco', 'Prupe.2G144500' => 'ppe', 'Prupe.2G195700' => 'ppe', 'Prupe.2G209800' => 'ppe', 'Prupe.5G080000' => 'ppe', 'Prupe.6G257900' => 'ppe', 'Psat3g001160' => 'psa', 'Psat6g181880' => 'psa', 'Psat7g233720' => 'psa', 'PSO063G7587' => 'pso', 'PSO339G2145' => 'pso', 'PSO339G3369' => 'pso', 'PSO478G2747' => 'pso', 'PSO513G0140' => 'pso', 'PSO782G1614' => 'pso', 'PSO782G4889' => 'pso', 'PSO782G5485' => 'pso', 'PSO801G0241' => 'pso', 'QL07p048854' => 'qlo', 'QL08p046745' => 'qlo', 'QL08p052606' => 'qlo', 'QL08p053414' => 'qlo', 'QL08p054868' => 'qlo', 'RcHm_v2.0_Chr1g0350251' => 'rch', 'RcHm_v2.0_Chr1g0360851' => 'rch', 'RcHm_v2.0_Chr1g0362791' => 'rch', 'RcHm_v2.0_Chr3g0466281' => 'rch', 'RcHm_v2.0_Chr7g0201481' => 'rch', 'Rhsim01G0148600' => 'rsi', 'Rhsim05G0194400' => 'rsi', 'Rhsim07G0000700' => 'rsi', 'Rhsim07G0000800' => 'rsi', 'Rhsim07G0027900' => 'rsi', 'Rhsim09G0149500' => 'rsi', 'RhsimUnG0186900' => 'rsi', 'Sabra01G0089900' => 'sbr', 'Sabra02G0114700' => 'sbr', 'Sabra02G0116300' => 'sbr', 'Sabra03G0080100' => 'sbr', 'Sabra08G0024300' => 'sbr', 'Sabra10G0174300' => 'sbr', 'Sabra14G0048900' => 'sbr', 'Sabra14G0076500' => 'sbr', 'SalBow5G2513' => 'sbo', 'Sc01g0002300' => 'sci', 'Sc01g0004450' => 'sci', 'Sc06g0001680' => 'sci', 'Sc23g0003580' => 'sci', 'Sed0000913' => 'sed', 'Sed0001655' => 'sed', 'Sed0007745' => 'sed', 'Sed0010951' => 'sed', 'Sed0017599' => 'sed', 'Sed0021405' => 'sed', 'Sed0022810' => 'sed', 'SEGI_07099' => 'sgi', 'SEGI_11931' => 'sgi', 'SEGI_13187' => 'sgi', 'SEGI_29958' => 'sgi', 'SEGI_36351' => 'sgi', 'SGA_v2.0_scaffold126G33770' => 'sas', 'SGA_v2.0_scaffold153G37003' => 'sas', 'SGA_v2.0_scaffold2G01359' => 'sas', 'SGA_v2.0_scaffold5G03064' => 'sas', 'SGA_v2.0_scaffold95G28903' => 'sas', 'SHI12701' => 'shi', 'SHI26410' => 'shi', 'SHI38997' => 'shi', 'SHI53759' => 'shi', 'SHI53886' => 'shi', 'SHI54714' => 'shi', 'SMO011G0041' => 'smo', 'SMO146G0251' => 'smo', 'SMO160G0004' => 'smo', 'SMO174G0057' => 'smo', 'SMO244G0089' => 'smo', 'SMO296G0011' => 'smo', 'Solyc01g091280.3' => 'sly', 'Solyc05g047610.3' => 'sly', 'Solyc05g047640.3' => 'sly', 'Solyc05g055630.3' => 'sly', 'Solyc10g018160.2' => 'sly', 'Solyc10g084820.2' => 'sly', 'Solyc10g086565.2' => 'sly', 'Sopen01g037030' => 'spe', 'Sopen05g027920' => 'spe', 'Sopen05g034070' => 'spe', 'Sopen10g007260' => 'spe', 'Sopen10g034260' => 'spe', 'Sopen10g035950' => 'spe', 'Sp3g07710' => 'spa', 'Sp4g27420' => 'spa', 'Sp5g02450' => 'spa', 'Sp6g01280' => 'spa', 'Sp6g38480' => 'spa', 'Sp7g20780' => 'spa', 'TAR374G1413' => 'tar', 'TAR623G1777' => 'tar', 'TAR629G2370' => 'tar', 'TAR633G1759' => 'tar', 'TAR636G3387' => 'tar', 'THA.LOC104802447' => 'tha', 'THA.LOC104813916' => 'tha', 'THA.LOC104816423' => 'tha', 'THA.LOC104817246' => 'tha', 'THA.LOC104825895' => 'tha', 'Thecc.01G335200' => 'tca', 'Thecc.01G377400' => 'tca', 'Thecc.03G262200' => 'tca', 'Thecc.05G036800' => 'tca', 'Thecc.10G080500' => 'tca', 'Thecc.10G080800' => 'tca', 'Thhalv10001560m.g' => 'esa', 'Thhalv10006120m.g' => 'esa', 'Thhalv10014375m.g' => 'esa', 'Thhalv10021264m.g' => 'esa', 'Thhalv10028856m.g' => 'esa', 'TPR.G1914' => 'tpr', 'TPR.G4757' => 'tpr', 'TPR.G5595' => 'tpr', 'TWI14G0952' => 'twi', 'TWI14G1307' => 'twi', 'TWI38G2143' => 'twi', 'TWI59G0826' => 'twi', 'TWI77G0527' => 'twi', 'TWI81G0150' => 'twi', 'unitig_21.g21018' => 'ugi', 'unitig_26.g9725' => 'ugi', 'unitig_744.g24653' => 'ugi', 'unitig_749.g13778' => 'ugi', 'unitig_899.g15035' => 'ugi', 'vmacro04296' => 'vma', 'vmacro04852' => 'vma', 'vmacro13404' => 'vma', 'vmacro20169' => 'vma', 'vmacro21014' => 'vma', 'VMungo0331G0237' => 'vmu', 'VMungo0331G0706' => 'vmu', 'VMungo0331G1361' => 'vmu', 'VMungo0331G1489' => 'vmu', 'VMungo0540G1037' => 'vmu', 'VMungo0720G2487' => 'vmu', 'VMungo0720G2721' => 'vmu', 'Zm00001eb086860' => 'zma', 'Zm00001eb104760' => 'zma', 'Zm00001eb148220' => 'zma', 'Zm00001eb259030' => 'zma', 'Zm00001eb289590' => 'zma', 'Zm00001eb420150' => 'zma' ) $gf_id = 'HOM05D000968' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000968' ) $data_identifier = 'HOM05D000968' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 19, 'bol' => (int) 9, 'bra' => (int) 12, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 5, 'ccan' => (int) 7, 'cde' => (int) 5, 'cfa' => (int) 8, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 4, 'dca' => (int) 5, 'din' => (int) 5, 'dzi' => (int) 12, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 25, 'fve' => (int) 5, 'gma' => (int) 9, 'ghi' => (int) 18, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 7, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 5, 'sun' => (int) 2, 'lal' => (int) 9, 'lja' => (int) 5, 'lonja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 9, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 2, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 3, 'stu' => (int) 6, 'pvu' => (int) 4, 'ptr' => (int) 8, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 3, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 1, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 5, 'sas' => (int) 5, 'shi' => (int) 6, 'smo' => (int) 6, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 3, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420150' $species_info = array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ) $local_species = 'pco' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000968', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p31690' => 'bna', 'A03p36040' => 'bna', 'A03p53730' => 'bna', 'A04p01410' => 'bna', 'A05p05420' => 'bna', 'A05p39630' => 'bna', 'A05p39640' => 'bna', 'A09p00970' => 'bna', 'A09p53060' => 'bna', 'A10p31890' => 'bna', 'Aa31LG10G15040' => 'aar', 'Aa31LG1G21090' => 'aar', 'Aa31LG1G26900' => 'aar', 'Aa31LG3G1820' => 'aar', 'Aa31LG5G1100' => 'aar', 'Aa31LG6G4740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2265' => 'aag', 'Actinidia07998' => 'ach', 'Actinidia11266' => 'ach', 'Actinidia12682' => 'ach', 'Actinidia26479' => 'ach', 'Actinidia31406' => 'ach', 'Actinidia32437' => 'ach', 'Actinidia38862' => 'ach', 'Ah.05g174230' => 'amhyb', 'Ah.05g179070' => 'amhyb', 'Ah.05g179090' => 'amhyb', 'Ah.12g059950' => 'amhyb', 'AL3G20480' => 'aly', 'AL4G44520' => 'aly', 'AL5G43110' => 'aly', 'AL6G13890' => 'aly', 'AL6G52620' => 'aly', 'AL7G30830' => 'aly', 'Aqoxy1G00899' => 'aox', 'Aqoxy5G04333' => 'aox', 'Aqoxy7G00641' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3IZ0NN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4EF6AW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W9P8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79GA3M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C43NQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFCU6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G95YVJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCHK29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LU1UG8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX91RN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGB4B1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8DA0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9H7JI' => 'arhy', 'AT3G09320' => 'ath', 'AT3G60800' => 'ath', 'AT4G00840' => 'ath', 'AT4G22750' => 'ath', 'AT5G04270' => 'ath', 'ATR0090G003' => 'atr', 'ATR0559G349' => 'atr', 'ATR0680G261' => 'atr', 'ATR0810G048' => 'atr', 'Atru.chr12.831' => 'acertr', 'Atru.chr5.303' => 'acertr', 'Atru.chr5.748' => 'acertr', 'Atru.chr8.1999' => 'acertr', 'Atru.chr9.1436' => 'acertr', 'AUR62004211' => 'cqu', 'AUR62004548' => 'cqu', 'AUR62013637' => 'cqu', 'AUR62022662' => 'cqu', 'AUR62025777' => 'cqu', 'AUR62042386' => 'cqu', 'BcaB01g02310' => 'bca', 'BcaB01g06062' => 'bca', 'BcaB02g08975' => 'bca', 'BcaB02g08980' => 'bca', 'BcaC01g04228' => 'bca', 'BcaC01g06830' => 'bca', 'BcaC02g10186' => 'bca', 'BcaC02g12214' => 'bca', 'BcaC04g24101' => 'bca', 'BcaC05g29520' => 'bca', 'BcaC05g29661' => 'bca', 'BcaC06g32130' => 'bca', 'BcaC06g32131' => 'bca', 'BcaC07g40601' => 'bca', 'BcaC07g42641' => 'bca', 'BcaNung01038' => 'bca', 'BcaNung01676' => 'bca', 'BcaNung02480' => 'bca', 'BcaNung07376' => 'bca', 'BolC3t16146H' => 'bol', 'BolC3t16637H' => 'bol', 'BolC4t22257H' => 'bol', 'BolC4t24728H' => 'bol', 'BolC5t34517H' => 'bol', 'BolC7t45703H' => 'bol', 'BolC8t51166H' => 'bol', 'BolC9t53038H' => 'bol', 'BolC9t60000H' => 'bol', 'BraA01t01345Z' => 'bra', 'BraA01t01346Z' => 'bra', 'BraA01t01348Z' => 'bra', 'BraA03t12347Z' => 'bra', 'BraA03t12775Z' => 'bra', 'BraA03t14439Z' => 'bra', 'BraA04t15860Z' => 'bra', 'BraA05t19511Z' => 'bra', 'BraA05t22746Z' => 'bra', 'BraA09t35767Z' => 'bra', 'BraA09t40732Z' => 'bra', 'BraA10t45233Z' => 'bra', 'C03p38720' => 'bna', 'C03p43680' => 'bna', 'C04p06350' => 'bna', 'C04p31800' => 'bna', 'C05p58680' => 'bna', 'C07p52110' => 'bna', 'C08p35760' => 'bna', 'C09p01050' => 'bna', 'C09p72600' => 'bna', 'CAN.G106.2' => 'can', 'CAN.G1482.1' => 'can', 'CAN.G324.12' => 'can', 'CAN.G388.20' => 'can', 'CAN.G412.7' => 'can', 'CAN.G694.32' => 'can', 'CAN.G92.12' => 'can', 'CANSAT11G2353' => 'cansat', 'CANSAT21G1398' => 'cansat', 'CANSAT56G2456' => 'cansat', 'CANSAT56G3031' => 'cansat', 'CANSAT56G4539' => 'cansat', 'CARHR083680' => 'chi', 'CARHR171190' => 'chi', 'CARHR209010' => 'chi', 'CARHR229680' => 'chi', 'CARHR249490' => 'chi', 'Carub.0003s0844' => 'cru', 'Carub.0005s2755' => 'cru', 'Carub.0006s0322' => 'cru', 'Carub.0006s3586' => 'cru', 'Carub.0007s1855' => 'cru', 'Ca_07808_v3' => 'car', 'Ca_09535_v3' => 'car', 'Ca_10548_v3' => 'car', 'Ca_19913_v3' => 'car', 'Ca_19916_v3' => 'car', 'Ca_19975_v3' => 'car', 'CBR_g22876' => 'cbr', 'CBR_g22879' => 'cbr', 'CBR_g38491' => 'cbr', 'CBR_g54185' => 'cbr', 'CBR_g54190' => 'cbr', 'Cc02_g11020' => 'ccan', 'Cc02_g23920' => 'ccan', 'Cc02_g39860' => 'ccan', 'Cc02_g39870' => 'ccan', 'Cc03_g06760' => 'ccan', 'Cc06_g02450' => 'ccan', 'Cc09_g09450' => 'ccan', 'CDE02G1959' => 'cde', 'CDE04G0600' => 'cde', 'CDE07G1996' => 'cde', 'CDE07G2078' => 'cde', 'CDE11G0611' => 'cde', 'Cfa001683' => 'cfa', 'Cfa001734' => 'cfa', 'Cfa001737' => 'cfa', 'Cfa003751' => 'cfa', 'Cfa012019' => 'cfa', 'Cfa017353' => 'cfa', 'Cfa017732' => 'cfa', 'Cfa022464' => 'cfa', 'Ciclev10012400m.g' => 'ccl', 'Ciclev10021242m.g' => 'ccl', 'Ciclev10021302m.g' => 'ccl', 'Ciclev10021463m.g' => 'ccl', 'Ciclev10032359m.g' => 'ccl', 'CiPaw.01G081000' => 'cil', 'CiPaw.01G262500' => 'cil', 'CiPaw.01G269800' => 'cil', 'CiPaw.02G168400' => 'cil', 'CiPaw.05G119500' => 'cil', 'CiPaw.11G147300' => 'cil', 'ClCG01G003630' => 'cla', 'ClCG05G000510' => 'cla', 'ClCG05G002300' => 'cla', 'ClCG08G007650' => 'cla', 'ClCG10G021250' => 'cla', 'COL.COLO4_06218' => 'col', 'COL.COLO4_12538' => 'col', 'COL.COLO4_14775' => 'col', 'COL.COLO4_23875' => 'col', 'Cpa.g.sc141.16' => 'cpa', 'Cpa.g.sc169.16' => 'cpa', 'Cpa.g.sc244.4' => 'cpa', 'Cpa.g.sc244.5' => 'cpa', 'Cpa.g.sc29.87' => 'cpa', 'Cpa.g.sc53.115' => 'cpa', 'Cre03.g207502' => 'cre', 'Cre06.g277000' => 'cre', 'Cre09.g394050' => 'cre', 'CsaV3_3G007680' => 'csa', 'CsaV3_3G009710' => 'csa', 'CsaV3_3G034790' => 'csa', 'CsaV3_5G003750' => 'csa', 'CsaV3_6G036620' => 'csa', 'CSS0002288' => 'camsi', 'CSS0011250' => 'camsi', 'CSS0021619' => 'camsi', 'CSS0046701' => 'camsi', 'DCAR_006420' => 'dca', 'DCAR_006865' => 'dca', 'DCAR_008558' => 'dca', 'DCAR_028754' => 'dca', 'DCAR_028755' => 'dca', 'Dinv31218' => 'din', 'Dinv32371' => 'din', 'Dinv34250' => 'din', 'Dinv37156' => 'din', 'Dinv43704' => 'din', 'Duzib093G1811' => 'dzi', 'Duzib106G1622' => 'dzi', 'Duzib114G0504' => 'dzi', 'Duzib128G0338' => 'dzi', 'Duzib128G1577' => 'dzi', 'Duzib133G0104' => 'dzi', 'Duzib133G1080' => 'dzi', 'Duzib138G0324' => 'dzi', 'Duzib138G0394' => 'dzi', 'Duzib205G0122' => 'dzi', 'Duzib268G1020' => 'dzi', 'Duzib268G1359' => 'dzi', 'ECA232G3929' => 'eca', 'ECA236G2210' => 'eca', 'ECA236G2287' => 'eca', 'ECA240G4568' => 'eca', 'ECA247G0894' => 'eca', 'EL10Ac1g00200' => 'bvu', 'EL10Ac1g00886' => 'bvu', 'EL10As1g23091' => 'bvu', 'EL10As1g23092' => 'bvu', 'Eucgr.A01284' => 'egr', 'Eucgr.A01285' => 'egr', 'Eucgr.D02456' => 'egr', 'Eucgr.E00018' => 'egr', 'Eucgr.E01439' => 'egr', 'Eucgr.G02859' => 'egr', 'FAN01G0168' => 'fan', 'FAN01G0453' => 'fan', 'FAN01G2761' => 'fan', 'FAN02G1239' => 'fan', 'FAN03G0645' => 'fan', 'FAN03G2707' => 'fan', 'FAN03G2978' => 'fan', 'FAN04G0227' => 'fan', 'FAN06G0091' => 'fan', 'FAN06G1418' => 'fan', 'FAN06G1512' => 'fan', 'FAN06G1986' => 'fan', 'FAN06G2905' => 'fan', 'FAN06G4325' => 'fan', 'FAN08G0033' => 'fan', 'FAN09G0642' => 'fan', 'FAN10G1763' => 'fan', 'FAN10G2026' => 'fan', 'FAN10G2513' => 'fan', 'FAN10G3402' => 'fan', 'FAN10G3564' => 'fan', 'FAN10G3987' => 'fan', 'FAN13G1490' => 'fan', 'FAN14G5857' => 'fan', 'FAN18G1188' => 'fan', 'FvH4_5g00750' => 'fve', 'FvH4_6g13410' => 'fve', 'FvH4_7g11740' => 'fve', 'FvH4_7g17410' => 'fve', 'FvH4_7g18860' => 'fve', 'Glyma.01G099100' => 'gma', 'Glyma.01G142300' => 'gma', 'Glyma.03G025500' => 'gma', 'Glyma.03G069700' => 'gma', 'Glyma.03G260000' => 'gma', 'Glyma.09G269800' => 'gma', 'Glyma.10G208700' => 'gma', 'Glyma.18G220400' => 'gma', 'Glyma.20G182000' => 'gma', 'Gohir.A01G221726' => 'ghi', 'Gohir.A07G134600' => 'ghi', 'Gohir.A07G146000' => 'ghi', 'Gohir.A08G173900' => 'ghi', 'Gohir.A09G194900' => 'ghi', 'Gohir.A10G204100' => 'ghi', 'Gohir.A11G080600' => 'ghi', 'Gohir.A11G327500' => 'ghi', 'Gohir.A12G101800' => 'ghi', 'Gohir.D01G211200' => 'ghi', 'Gohir.D07G139200' => 'ghi', 'Gohir.D07G152100' => 'ghi', 'Gohir.D08G192600' => 'ghi', 'Gohir.D09G189200' => 'ghi', 'Gohir.D10G212000' => 'ghi', 'Gohir.D11G085200' => 'ghi', 'Gohir.D11G346400' => 'ghi', 'Gohir.D12G104800' => 'ghi', 'Gorai.001G151300' => 'gra', 'Gorai.001G174100' => 'gra', 'Gorai.002G257000' => 'gra', 'Gorai.004G202600' => 'gra', 'Gorai.007G090900' => 'gra', 'Gorai.007G376700' => 'gra', 'Gorai.008G114100' => 'gra', 'Gorai.011G237900' => 'gra', 'GSVIVG01005450001' => 'vvi', 'GSVIVG01016232001' => 'vvi', 'GSVIVG01026157001' => 'vvi', 'GSVIVG01027419001' => 'vvi', 'GSVIVG01027631001' => 'vvi', 'GSVIVG01034143001' => 'vvi', 'HanXRQChr03g0093921' => 'han', 'HanXRQChr04g0120001' => 'han', 'HanXRQChr04g0122561' => 'han', 'HanXRQChr09g0246851' => 'han', 'HanXRQChr10g0293311' => 'han', 'HanXRQChr13g0425231' => 'han', 'HanXRQChr16g0532571' => 'han', 'Haze_09050' => 'cav', 'Haze_15715' => 'cav', 'Haze_15716' => 'cav', 'Haze_16803' => 'cav', 'Haze_16850' => 'cav', 'Hma1.2p1_0301F.1_g118655' => 'hma', 'Hma1.2p1_0309F.1_g120590' => 'hma', 'Hma1.2p1_0936F.1_g238900' => 'hma', 'Hma1.2p1_3552F.1_g336740' => 'hma', 'HPP92_003520' => 'vpl', 'HPP92_006628' => 'vpl', 'HPP92_006645' => 'vpl', 'HPP92_014669' => 'vpl', 'HPP92_015077' => 'vpl', 'Hund16742' => 'sun', 'Hund17022' => 'sun', 'Lalb_Chr02g0152131' => 'lal', 'Lalb_Chr05g0225371' => 'lal', 'Lalb_Chr07g0189841' => 'lal', 'Lalb_Chr07g0192961' => 'lal', 'Lalb_Chr12g0208221' => 'lal', 'Lalb_Chr13g0291211' => 'lal', 'Lalb_Chr13g0291781' => 'lal', 'Lalb_Chr18g0044651' => 'lal', 'Lalb_Chr21g0313731' => 'lal', 'Lj1g0022533' => 'lja', 'Lj2A18T50' => 'lonja', 'Lj2A92G93' => 'lonja', 'Lj3A965T73' => 'lonja', 'Lj3g0000673' => 'lja', 'Lj3g0002666' => 'lja', 'Lj4g0016985' => 'lja', 'Lj5g0003625' => 'lja', 'Lj7A529G36' => 'lonja', 'Lj9A569T49' => 'lonja', 'Lj9A604T63' => 'lonja', 'Lsat_1_v5_gn_3_132060' => 'lsa', 'Lsat_1_v5_gn_4_68941' => 'lsa', 'Lsat_1_v5_gn_5_95580' => 'lsa', 'Lsat_1_v5_gn_7_161' => 'lsa', 'Lsat_1_v5_gn_7_7041' => 'lsa', 'Lsat_1_v5_gn_9_33481' => 'lsa', 'Lsat_1_v5_gn_9_68260' => 'lsa', 'Manes.01G073100' => 'mes', 'Manes.01G266300' => 'mes', 'Manes.02G033300' => 'mes', 'Manes.05G017900' => 'mes', 'Manes.05G046100' => 'mes', 'Manes.08G080900' => 'mes', 'Manes.10G049400' => 'mes', 'Mapoly0009s0186' => 'mpo', 'Mapoly0036s0118' => 'mpo', 'Mapoly0101s0046' => 'mpo', 'MBI04_g30218_MAGBIO' => 'mbi', 'MBI04_g35564_MAGBIO' => 'mbi', 'MBI12_g34011_MAGBIO' => 'mbi', 'MBI14_g04655_MAGBIO' => 'mbi', 'MCO07G653' => 'mco', 'MCO10G173' => 'mco', 'MD01G1087100' => 'mdo', 'MD01G1104200' => 'mdo', 'MD02G1205100' => 'mdo', 'MD04G1079200' => 'mdo', 'MD04G1131400' => 'mdo', 'MD07G1121600' => 'mdo', 'MD07G1157300' => 'mdo', 'MD07G1171000' => 'mdo', 'MD12G1144500' => 'mdo', 'Medtr1g094610' => 'mtr', 'Medtr4g021795' => 'mtr', 'Medtr4g023760' => 'mtr', 'Medtr7g118050' => 'mtr', 'MELO3C005582.2' => 'cme', 'MELO3C005989.2' => 'cme', 'MELO3C006192.2' => 'cme', 'MELO3C009248.2' => 'cme', 'MELO3C019817.2' => 'cme', 'Migut.B01625' => 'egut', 'Migut.B01915' => 'egut', 'Migut.F01721' => 'egut', 'Migut.J00314' => 'egut', 'MSTRG.20742' => 'ama', 'MSTRG.8134' => 'ama', 'Nitab4.5_0000096g0010' => 'nta', 'Nitab4.5_0000202g0030' => 'nta', 'Nitab4.5_0000216g0370' => 'nta', 'Nitab4.5_0000457g0230' => 'nta', 'Nitab4.5_0001702g0170' => 'nta', 'Nitab4.5_0003607g0010' => 'nta', 'Nitab4.5_0004917g0020' => 'nta', 'Nitab4.5_0007059g0010' => 'nta', 'Nitab4.5_0007184g0010' => 'nta', 'Nitab4.5_0007346g0020' => 'nta', 'Nn1g00410' => 'nnu', 'Nn1g01252' => 'nnu', 'Nn2g11168' => 'nnu', 'Nn2g13403' => 'nnu', 'Nn2g13760' => 'nnu', 'Nn4g26380' => 'nnu', 'Oeu000806.2' => 'oeu', 'Oeu005788.1' => 'oeu', 'Oeu006900.3' => 'oeu', 'Oeu007797.1' => 'oeu', 'Oeu011932.1' => 'oeu', 'Oeu022739.1' => 'oeu', 'Oeu037918.1' => 'oeu', 'Oeu055490.2' => 'oeu', 'Os01g0844400' => 'osa', 'Os02g0819100' => 'osa', 'Os03g0804300' => 'osa', 'Os05g0458000' => 'osa', 'Os07g0467800' => 'osa', 'Os12g0602200' => 'osa', 'Peaxi162Scf00013g03444' => 'pax', 'Peaxi162Scf00094g01120' => 'pax', 'Peaxi162Scf00191g01211' => 'pax', 'Peaxi162Scf00238g01110' => 'pax', 'Peaxi162Scf00330g00719' => 'pax', 'Peaxi162Scf00627g00018' => 'pax', 'PGR031G2686' => 'pgr', 'PGR042G0809' => 'pgr', 'PGR142G0193' => 'pgr', 'PGSC0003DMG400011066' => 'stu', 'PGSC0003DMG400012041' => 'stu', 'PGSC0003DMG400013678' => 'stu', 'PGSC0003DMG400023477' => 'stu', 'PGSC0003DMG400025956' => 'stu', 'PGSC0003DMG401019151' => 'stu', 'Phvul.006G116400' => 'pvu', 'Phvul.007G097300' => 'pvu', 'Phvul.010G015000' => 'pvu', 'Phvul.010G083900' => 'pvu', 'Potri.001G117100' => 'ptr', 'Potri.002G147300' => 'ptr', 'Potri.003G115600' => 'ptr', 'Potri.006G087400' => 'ptr', 'Potri.010G226100' => 'ptr', 'Potri.014G069200' => 'ptr', 'Potri.014G104000' => 'ptr', 'Potri.016G100200' => 'ptr', 'Pp3c10_20450' => 'ppa', 'Pp3c1_42400' => 'ppa', 'Pp3c3_24390' => 'ppa', 'Pp3c3_2860' => 'ppa', 'PRCOL_00003193' => 'pco', 'Prupe.2G144500' => 'ppe', 'Prupe.2G195700' => 'ppe', 'Prupe.2G209800' => 'ppe', 'Prupe.5G080000' => 'ppe', 'Prupe.6G257900' => 'ppe', 'Psat3g001160' => 'psa', 'Psat6g181880' => 'psa', 'Psat7g233720' => 'psa', 'PSO063G7587' => 'pso', 'PSO339G2145' => 'pso', 'PSO339G3369' => 'pso', 'PSO478G2747' => 'pso', 'PSO513G0140' => 'pso', 'PSO782G1614' => 'pso', 'PSO782G4889' => 'pso', 'PSO782G5485' => 'pso', 'PSO801G0241' => 'pso', 'QL07p048854' => 'qlo', 'QL08p046745' => 'qlo', 'QL08p052606' => 'qlo', 'QL08p053414' => 'qlo', 'QL08p054868' => 'qlo', 'RcHm_v2.0_Chr1g0350251' => 'rch', 'RcHm_v2.0_Chr1g0360851' => 'rch', 'RcHm_v2.0_Chr1g0362791' => 'rch', 'RcHm_v2.0_Chr3g0466281' => 'rch', 'RcHm_v2.0_Chr7g0201481' => 'rch', 'Rhsim01G0148600' => 'rsi', 'Rhsim05G0194400' => 'rsi', 'Rhsim07G0000700' => 'rsi', 'Rhsim07G0000800' => 'rsi', 'Rhsim07G0027900' => 'rsi', 'Rhsim09G0149500' => 'rsi', 'RhsimUnG0186900' => 'rsi', 'Sabra01G0089900' => 'sbr', 'Sabra02G0114700' => 'sbr', 'Sabra02G0116300' => 'sbr', 'Sabra03G0080100' => 'sbr', 'Sabra08G0024300' => 'sbr', 'Sabra10G0174300' => 'sbr', 'Sabra14G0048900' => 'sbr', 'Sabra14G0076500' => 'sbr', 'SalBow5G2513' => 'sbo', 'Sc01g0002300' => 'sci', 'Sc01g0004450' => 'sci', 'Sc06g0001680' => 'sci', 'Sc23g0003580' => 'sci', 'Sed0000913' => 'sed', 'Sed0001655' => 'sed', 'Sed0007745' => 'sed', 'Sed0010951' => 'sed', 'Sed0017599' => 'sed', 'Sed0021405' => 'sed', 'Sed0022810' => 'sed', 'SEGI_07099' => 'sgi', 'SEGI_11931' => 'sgi', 'SEGI_13187' => 'sgi', 'SEGI_29958' => 'sgi', 'SEGI_36351' => 'sgi', 'SGA_v2.0_scaffold126G33770' => 'sas', 'SGA_v2.0_scaffold153G37003' => 'sas', 'SGA_v2.0_scaffold2G01359' => 'sas', 'SGA_v2.0_scaffold5G03064' => 'sas', 'SGA_v2.0_scaffold95G28903' => 'sas', 'SHI12701' => 'shi', 'SHI26410' => 'shi', 'SHI38997' => 'shi', 'SHI53759' => 'shi', 'SHI53886' => 'shi', 'SHI54714' => 'shi', 'SMO011G0041' => 'smo', 'SMO146G0251' => 'smo', 'SMO160G0004' => 'smo', 'SMO174G0057' => 'smo', 'SMO244G0089' => 'smo', 'SMO296G0011' => 'smo', 'Solyc01g091280.3' => 'sly', 'Solyc05g047610.3' => 'sly', 'Solyc05g047640.3' => 'sly', 'Solyc05g055630.3' => 'sly', 'Solyc10g018160.2' => 'sly', 'Solyc10g084820.2' => 'sly', 'Solyc10g086565.2' => 'sly', 'Sopen01g037030' => 'spe', 'Sopen05g027920' => 'spe', 'Sopen05g034070' => 'spe', 'Sopen10g007260' => 'spe', 'Sopen10g034260' => 'spe', 'Sopen10g035950' => 'spe', 'Sp3g07710' => 'spa', 'Sp4g27420' => 'spa', 'Sp5g02450' => 'spa', 'Sp6g01280' => 'spa', 'Sp6g38480' => 'spa', 'Sp7g20780' => 'spa', 'TAR374G1413' => 'tar', 'TAR623G1777' => 'tar', 'TAR629G2370' => 'tar', 'TAR633G1759' => 'tar', 'TAR636G3387' => 'tar', 'THA.LOC104802447' => 'tha', 'THA.LOC104813916' => 'tha', 'THA.LOC104816423' => 'tha', 'THA.LOC104817246' => 'tha', 'THA.LOC104825895' => 'tha', 'Thecc.01G335200' => 'tca', 'Thecc.01G377400' => 'tca', 'Thecc.03G262200' => 'tca', 'Thecc.05G036800' => 'tca', 'Thecc.10G080500' => 'tca', 'Thecc.10G080800' => 'tca', 'Thhalv10001560m.g' => 'esa', 'Thhalv10006120m.g' => 'esa', 'Thhalv10014375m.g' => 'esa', 'Thhalv10021264m.g' => 'esa', 'Thhalv10028856m.g' => 'esa', 'TPR.G1914' => 'tpr', 'TPR.G4757' => 'tpr', 'TPR.G5595' => 'tpr', 'TWI14G0952' => 'twi', 'TWI14G1307' => 'twi', 'TWI38G2143' => 'twi', 'TWI59G0826' => 'twi', 'TWI77G0527' => 'twi', 'TWI81G0150' => 'twi', 'unitig_21.g21018' => 'ugi', 'unitig_26.g9725' => 'ugi', 'unitig_744.g24653' => 'ugi', 'unitig_749.g13778' => 'ugi', 'unitig_899.g15035' => 'ugi', 'vmacro04296' => 'vma', 'vmacro04852' => 'vma', 'vmacro13404' => 'vma', 'vmacro20169' => 'vma', 'vmacro21014' => 'vma', 'VMungo0331G0237' => 'vmu', 'VMungo0331G0706' => 'vmu', 'VMungo0331G1361' => 'vmu', 'VMungo0331G1489' => 'vmu', 'VMungo0540G1037' => 'vmu', 'VMungo0720G2487' => 'vmu', 'VMungo0720G2721' => 'vmu', 'Zm00001eb086860' => 'zma', 'Zm00001eb104760' => 'zma', 'Zm00001eb148220' => 'zma', 'Zm00001eb259030' => 'zma', 'Zm00001eb289590' => 'zma', 'Zm00001eb420150' => 'zma' ), 'gf_id' => 'HOM05D000968', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000968' ), 'data_identifier' => 'HOM05D000968', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000968', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p31690' => 'bna', 'A03p36040' => 'bna', 'A03p53730' => 'bna', 'A04p01410' => 'bna', 'A05p05420' => 'bna', 'A05p39630' => 'bna', 'A05p39640' => 'bna', 'A09p00970' => 'bna', 'A09p53060' => 'bna', 'A10p31890' => 'bna', 'Aa31LG10G15040' => 'aar', 'Aa31LG1G21090' => 'aar', 'Aa31LG1G26900' => 'aar', 'Aa31LG3G1820' => 'aar', 'Aa31LG5G1100' => 'aar', 'Aa31LG6G4740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2265' => 'aag', 'Actinidia07998' => 'ach', 'Actinidia11266' => 'ach', 'Actinidia12682' => 'ach', 'Actinidia26479' => 'ach', 'Actinidia31406' => 'ach', 'Actinidia32437' => 'ach', 'Actinidia38862' => 'ach', 'Ah.05g174230' => 'amhyb', 'Ah.05g179070' => 'amhyb', 'Ah.05g179090' => 'amhyb', 'Ah.12g059950' => 'amhyb', 'AL3G20480' => 'aly', 'AL4G44520' => 'aly', 'AL5G43110' => 'aly', 'AL6G13890' => 'aly', 'AL6G52620' => 'aly', 'AL7G30830' => 'aly', 'Aqoxy1G00899' => 'aox', 'Aqoxy5G04333' => 'aox', 'Aqoxy7G00641' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3IZ0NN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4EF6AW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W9P8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79GA3M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C43NQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFCU6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G95YVJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCHK29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LU1UG8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX91RN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGB4B1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8DA0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9H7JI' => 'arhy', 'AT3G09320' => 'ath', 'AT3G60800' => 'ath', 'AT4G00840' => 'ath', 'AT4G22750' => 'ath', 'AT5G04270' => 'ath', 'ATR0090G003' => 'atr', 'ATR0559G349' => 'atr', 'ATR0680G261' => 'atr', 'ATR0810G048' => 'atr', 'Atru.chr12.831' => 'acertr', 'Atru.chr5.303' => 'acertr', 'Atru.chr5.748' => 'acertr', 'Atru.chr8.1999' => 'acertr', 'Atru.chr9.1436' => 'acertr', 'AUR62004211' => 'cqu', 'AUR62004548' => 'cqu', 'AUR62013637' => 'cqu', 'AUR62022662' => 'cqu', 'AUR62025777' => 'cqu', 'AUR62042386' => 'cqu', 'BcaB01g02310' => 'bca', 'BcaB01g06062' => 'bca', 'BcaB02g08975' => 'bca', 'BcaB02g08980' => 'bca', 'BcaC01g04228' => 'bca', 'BcaC01g06830' => 'bca', 'BcaC02g10186' => 'bca', 'BcaC02g12214' => 'bca', 'BcaC04g24101' => 'bca', 'BcaC05g29520' => 'bca', 'BcaC05g29661' => 'bca', 'BcaC06g32130' => 'bca', 'BcaC06g32131' => 'bca', 'BcaC07g40601' => 'bca', 'BcaC07g42641' => 'bca', 'BcaNung01038' => 'bca', 'BcaNung01676' => 'bca', 'BcaNung02480' => 'bca', 'BcaNung07376' => 'bca', 'BolC3t16146H' => 'bol', 'BolC3t16637H' => 'bol', 'BolC4t22257H' => 'bol', 'BolC4t24728H' => 'bol', 'BolC5t34517H' => 'bol', 'BolC7t45703H' => 'bol', 'BolC8t51166H' => 'bol', 'BolC9t53038H' => 'bol', 'BolC9t60000H' => 'bol', 'BraA01t01345Z' => 'bra', 'BraA01t01346Z' => 'bra', 'BraA01t01348Z' => 'bra', 'BraA03t12347Z' => 'bra', 'BraA03t12775Z' => 'bra', 'BraA03t14439Z' => 'bra', 'BraA04t15860Z' => 'bra', 'BraA05t19511Z' => 'bra', 'BraA05t22746Z' => 'bra', 'BraA09t35767Z' => 'bra', 'BraA09t40732Z' => 'bra', 'BraA10t45233Z' => 'bra', 'C03p38720' => 'bna', 'C03p43680' => 'bna', 'C04p06350' => 'bna', 'C04p31800' => 'bna', 'C05p58680' => 'bna', 'C07p52110' => 'bna', 'C08p35760' => 'bna', 'C09p01050' => 'bna', 'C09p72600' => 'bna', 'CAN.G106.2' => 'can', 'CAN.G1482.1' => 'can', 'CAN.G324.12' => 'can', 'CAN.G388.20' => 'can', 'CAN.G412.7' => 'can', 'CAN.G694.32' => 'can', 'CAN.G92.12' => 'can', 'CANSAT11G2353' => 'cansat', 'CANSAT21G1398' => 'cansat', 'CANSAT56G2456' => 'cansat', 'CANSAT56G3031' => 'cansat', 'CANSAT56G4539' => 'cansat', 'CARHR083680' => 'chi', 'CARHR171190' => 'chi', 'CARHR209010' => 'chi', 'CARHR229680' => 'chi', 'CARHR249490' => 'chi', 'Carub.0003s0844' => 'cru', 'Carub.0005s2755' => 'cru', 'Carub.0006s0322' => 'cru', 'Carub.0006s3586' => 'cru', 'Carub.0007s1855' => 'cru', 'Ca_07808_v3' => 'car', 'Ca_09535_v3' => 'car', 'Ca_10548_v3' => 'car', 'Ca_19913_v3' => 'car', 'Ca_19916_v3' => 'car', 'Ca_19975_v3' => 'car', 'CBR_g22876' => 'cbr', 'CBR_g22879' => 'cbr', 'CBR_g38491' => 'cbr', 'CBR_g54185' => 'cbr', 'CBR_g54190' => 'cbr', 'Cc02_g11020' => 'ccan', 'Cc02_g23920' => 'ccan', 'Cc02_g39860' => 'ccan', 'Cc02_g39870' => 'ccan', 'Cc03_g06760' => 'ccan', 'Cc06_g02450' => 'ccan', 'Cc09_g09450' => 'ccan', 'CDE02G1959' => 'cde', 'CDE04G0600' => 'cde', 'CDE07G1996' => 'cde', 'CDE07G2078' => 'cde', 'CDE11G0611' => 'cde', 'Cfa001683' => 'cfa', 'Cfa001734' => 'cfa', 'Cfa001737' => 'cfa', 'Cfa003751' => 'cfa', 'Cfa012019' => 'cfa', 'Cfa017353' => 'cfa', 'Cfa017732' => 'cfa', 'Cfa022464' => 'cfa', 'Ciclev10012400m.g' => 'ccl', 'Ciclev10021242m.g' => 'ccl', 'Ciclev10021302m.g' => 'ccl', 'Ciclev10021463m.g' => 'ccl', 'Ciclev10032359m.g' => 'ccl', 'CiPaw.01G081000' => 'cil', 'CiPaw.01G262500' => 'cil', 'CiPaw.01G269800' => 'cil', 'CiPaw.02G168400' => 'cil', 'CiPaw.05G119500' => 'cil', 'CiPaw.11G147300' => 'cil', 'ClCG01G003630' => 'cla', 'ClCG05G000510' => 'cla', 'ClCG05G002300' => 'cla', 'ClCG08G007650' => 'cla', 'ClCG10G021250' => 'cla', 'COL.COLO4_06218' => 'col', 'COL.COLO4_12538' => 'col', 'COL.COLO4_14775' => 'col', 'COL.COLO4_23875' => 'col', 'Cpa.g.sc141.16' => 'cpa', 'Cpa.g.sc169.16' => 'cpa', 'Cpa.g.sc244.4' => 'cpa', 'Cpa.g.sc244.5' => 'cpa', 'Cpa.g.sc29.87' => 'cpa', 'Cpa.g.sc53.115' => 'cpa', 'Cre03.g207502' => 'cre', 'Cre06.g277000' => 'cre', 'Cre09.g394050' => 'cre', 'CsaV3_3G007680' => 'csa', 'CsaV3_3G009710' => 'csa', 'CsaV3_3G034790' => 'csa', 'CsaV3_5G003750' => 'csa', 'CsaV3_6G036620' => 'csa', 'CSS0002288' => 'camsi', 'CSS0011250' => 'camsi', 'CSS0021619' => 'camsi', 'CSS0046701' => 'camsi', 'DCAR_006420' => 'dca', 'DCAR_006865' => 'dca', 'DCAR_008558' => 'dca', 'DCAR_028754' => 'dca', 'DCAR_028755' => 'dca', 'Dinv31218' => 'din', 'Dinv32371' => 'din', 'Dinv34250' => 'din', 'Dinv37156' => 'din', 'Dinv43704' => 'din', 'Duzib093G1811' => 'dzi', 'Duzib106G1622' => 'dzi', 'Duzib114G0504' => 'dzi', 'Duzib128G0338' => 'dzi', 'Duzib128G1577' => 'dzi', 'Duzib133G0104' => 'dzi', 'Duzib133G1080' => 'dzi', 'Duzib138G0324' => 'dzi', 'Duzib138G0394' => 'dzi', 'Duzib205G0122' => 'dzi', 'Duzib268G1020' => 'dzi', 'Duzib268G1359' => 'dzi', 'ECA232G3929' => 'eca', 'ECA236G2210' => 'eca', 'ECA236G2287' => 'eca', 'ECA240G4568' => 'eca', 'ECA247G0894' => 'eca', 'EL10Ac1g00200' => 'bvu', 'EL10Ac1g00886' => 'bvu', 'EL10As1g23091' => 'bvu', 'EL10As1g23092' => 'bvu', 'Eucgr.A01284' => 'egr', 'Eucgr.A01285' => 'egr', 'Eucgr.D02456' => 'egr', 'Eucgr.E00018' => 'egr', 'Eucgr.E01439' => 'egr', 'Eucgr.G02859' => 'egr', 'FAN01G0168' => 'fan', 'FAN01G0453' => 'fan', 'FAN01G2761' => 'fan', 'FAN02G1239' => 'fan', 'FAN03G0645' => 'fan', 'FAN03G2707' => 'fan', 'FAN03G2978' => 'fan', 'FAN04G0227' => 'fan', 'FAN06G0091' => 'fan', 'FAN06G1418' => 'fan', 'FAN06G1512' => 'fan', 'FAN06G1986' => 'fan', 'FAN06G2905' => 'fan', 'FAN06G4325' => 'fan', 'FAN08G0033' => 'fan', 'FAN09G0642' => 'fan', 'FAN10G1763' => 'fan', 'FAN10G2026' => 'fan', 'FAN10G2513' => 'fan', 'FAN10G3402' => 'fan', 'FAN10G3564' => 'fan', 'FAN10G3987' => 'fan', 'FAN13G1490' => 'fan', 'FAN14G5857' => 'fan', 'FAN18G1188' => 'fan', 'FvH4_5g00750' => 'fve', 'FvH4_6g13410' => 'fve', 'FvH4_7g11740' => 'fve', 'FvH4_7g17410' => 'fve', 'FvH4_7g18860' => 'fve', 'Glyma.01G099100' => 'gma', 'Glyma.01G142300' => 'gma', 'Glyma.03G025500' => 'gma', 'Glyma.03G069700' => 'gma', 'Glyma.03G260000' => 'gma', 'Glyma.09G269800' => 'gma', 'Glyma.10G208700' => 'gma', 'Glyma.18G220400' => 'gma', 'Glyma.20G182000' => 'gma', 'Gohir.A01G221726' => 'ghi', 'Gohir.A07G134600' => 'ghi', 'Gohir.A07G146000' => 'ghi', 'Gohir.A08G173900' => 'ghi', 'Gohir.A09G194900' => 'ghi', 'Gohir.A10G204100' => 'ghi', 'Gohir.A11G080600' => 'ghi', 'Gohir.A11G327500' => 'ghi', 'Gohir.A12G101800' => 'ghi', 'Gohir.D01G211200' => 'ghi', 'Gohir.D07G139200' => 'ghi', 'Gohir.D07G152100' => 'ghi', 'Gohir.D08G192600' => 'ghi', 'Gohir.D09G189200' => 'ghi', 'Gohir.D10G212000' => 'ghi', 'Gohir.D11G085200' => 'ghi', 'Gohir.D11G346400' => 'ghi', 'Gohir.D12G104800' => 'ghi', 'Gorai.001G151300' => 'gra', 'Gorai.001G174100' => 'gra', 'Gorai.002G257000' => 'gra', 'Gorai.004G202600' => 'gra', 'Gorai.007G090900' => 'gra', 'Gorai.007G376700' => 'gra', 'Gorai.008G114100' => 'gra', 'Gorai.011G237900' => 'gra', 'GSVIVG01005450001' => 'vvi', 'GSVIVG01016232001' => 'vvi', 'GSVIVG01026157001' => 'vvi', 'GSVIVG01027419001' => 'vvi', 'GSVIVG01027631001' => 'vvi', 'GSVIVG01034143001' => 'vvi', 'HanXRQChr03g0093921' => 'han', 'HanXRQChr04g0120001' => 'han', 'HanXRQChr04g0122561' => 'han', 'HanXRQChr09g0246851' => 'han', 'HanXRQChr10g0293311' => 'han', 'HanXRQChr13g0425231' => 'han', 'HanXRQChr16g0532571' => 'han', 'Haze_09050' => 'cav', 'Haze_15715' => 'cav', 'Haze_15716' => 'cav', 'Haze_16803' => 'cav', 'Haze_16850' => 'cav', 'Hma1.2p1_0301F.1_g118655' => 'hma', 'Hma1.2p1_0309F.1_g120590' => 'hma', 'Hma1.2p1_0936F.1_g238900' => 'hma', 'Hma1.2p1_3552F.1_g336740' => 'hma', 'HPP92_003520' => 'vpl', 'HPP92_006628' => 'vpl', 'HPP92_006645' => 'vpl', 'HPP92_014669' => 'vpl', 'HPP92_015077' => 'vpl', 'Hund16742' => 'sun', 'Hund17022' => 'sun', 'Lalb_Chr02g0152131' => 'lal', 'Lalb_Chr05g0225371' => 'lal', 'Lalb_Chr07g0189841' => 'lal', 'Lalb_Chr07g0192961' => 'lal', 'Lalb_Chr12g0208221' => 'lal', 'Lalb_Chr13g0291211' => 'lal', 'Lalb_Chr13g0291781' => 'lal', 'Lalb_Chr18g0044651' => 'lal', 'Lalb_Chr21g0313731' => 'lal', 'Lj1g0022533' => 'lja', 'Lj2A18T50' => 'lonja', 'Lj2A92G93' => 'lonja', 'Lj3A965T73' => 'lonja', 'Lj3g0000673' => 'lja', 'Lj3g0002666' => 'lja', 'Lj4g0016985' => 'lja', 'Lj5g0003625' => 'lja', 'Lj7A529G36' => 'lonja', 'Lj9A569T49' => 'lonja', 'Lj9A604T63' => 'lonja', 'Lsat_1_v5_gn_3_132060' => 'lsa', 'Lsat_1_v5_gn_4_68941' => 'lsa', 'Lsat_1_v5_gn_5_95580' => 'lsa', 'Lsat_1_v5_gn_7_161' => 'lsa', 'Lsat_1_v5_gn_7_7041' => 'lsa', 'Lsat_1_v5_gn_9_33481' => 'lsa', 'Lsat_1_v5_gn_9_68260' => 'lsa', 'Manes.01G073100' => 'mes', 'Manes.01G266300' => 'mes', 'Manes.02G033300' => 'mes', 'Manes.05G017900' => 'mes', 'Manes.05G046100' => 'mes', 'Manes.08G080900' => 'mes', 'Manes.10G049400' => 'mes', 'Mapoly0009s0186' => 'mpo', 'Mapoly0036s0118' => 'mpo', 'Mapoly0101s0046' => 'mpo', 'MBI04_g30218_MAGBIO' => 'mbi', 'MBI04_g35564_MAGBIO' => 'mbi', 'MBI12_g34011_MAGBIO' => 'mbi', 'MBI14_g04655_MAGBIO' => 'mbi', 'MCO07G653' => 'mco', 'MCO10G173' => 'mco', 'MD01G1087100' => 'mdo', 'MD01G1104200' => 'mdo', 'MD02G1205100' => 'mdo', 'MD04G1079200' => 'mdo', 'MD04G1131400' => 'mdo', 'MD07G1121600' => 'mdo', 'MD07G1157300' => 'mdo', 'MD07G1171000' => 'mdo', 'MD12G1144500' => 'mdo', 'Medtr1g094610' => 'mtr', 'Medtr4g021795' => 'mtr', 'Medtr4g023760' => 'mtr', 'Medtr7g118050' => 'mtr', 'MELO3C005582.2' => 'cme', 'MELO3C005989.2' => 'cme', 'MELO3C006192.2' => 'cme', 'MELO3C009248.2' => 'cme', 'MELO3C019817.2' => 'cme', 'Migut.B01625' => 'egut', 'Migut.B01915' => 'egut', 'Migut.F01721' => 'egut', 'Migut.J00314' => 'egut', 'MSTRG.20742' => 'ama', 'MSTRG.8134' => 'ama', 'Nitab4.5_0000096g0010' => 'nta', 'Nitab4.5_0000202g0030' => 'nta', 'Nitab4.5_0000216g0370' => 'nta', 'Nitab4.5_0000457g0230' => 'nta', 'Nitab4.5_0001702g0170' => 'nta', 'Nitab4.5_0003607g0010' => 'nta', 'Nitab4.5_0004917g0020' => 'nta', 'Nitab4.5_0007059g0010' => 'nta', 'Nitab4.5_0007184g0010' => 'nta', 'Nitab4.5_0007346g0020' => 'nta', 'Nn1g00410' => 'nnu', 'Nn1g01252' => 'nnu', 'Nn2g11168' => 'nnu', 'Nn2g13403' => 'nnu', 'Nn2g13760' => 'nnu', 'Nn4g26380' => 'nnu', 'Oeu000806.2' => 'oeu', 'Oeu005788.1' => 'oeu', 'Oeu006900.3' => 'oeu', 'Oeu007797.1' => 'oeu', 'Oeu011932.1' => 'oeu', 'Oeu022739.1' => 'oeu', 'Oeu037918.1' => 'oeu', 'Oeu055490.2' => 'oeu', 'Os01g0844400' => 'osa', 'Os02g0819100' => 'osa', 'Os03g0804300' => 'osa', 'Os05g0458000' => 'osa', 'Os07g0467800' => 'osa', 'Os12g0602200' => 'osa', 'Peaxi162Scf00013g03444' => 'pax', 'Peaxi162Scf00094g01120' => 'pax', 'Peaxi162Scf00191g01211' => 'pax', 'Peaxi162Scf00238g01110' => 'pax', 'Peaxi162Scf00330g00719' => 'pax', 'Peaxi162Scf00627g00018' => 'pax', 'PGR031G2686' => 'pgr', 'PGR042G0809' => 'pgr', 'PGR142G0193' => 'pgr', 'PGSC0003DMG400011066' => 'stu', 'PGSC0003DMG400012041' => 'stu', 'PGSC0003DMG400013678' => 'stu', 'PGSC0003DMG400023477' => 'stu', 'PGSC0003DMG400025956' => 'stu', 'PGSC0003DMG401019151' => 'stu', 'Phvul.006G116400' => 'pvu', 'Phvul.007G097300' => 'pvu', 'Phvul.010G015000' => 'pvu', 'Phvul.010G083900' => 'pvu', 'Potri.001G117100' => 'ptr', 'Potri.002G147300' => 'ptr', 'Potri.003G115600' => 'ptr', 'Potri.006G087400' => 'ptr', 'Potri.010G226100' => 'ptr', 'Potri.014G069200' => 'ptr', 'Potri.014G104000' => 'ptr', 'Potri.016G100200' => 'ptr', 'Pp3c10_20450' => 'ppa', 'Pp3c1_42400' => 'ppa', 'Pp3c3_24390' => 'ppa', 'Pp3c3_2860' => 'ppa', 'PRCOL_00003193' => 'pco', 'Prupe.2G144500' => 'ppe', 'Prupe.2G195700' => 'ppe', 'Prupe.2G209800' => 'ppe', 'Prupe.5G080000' => 'ppe', 'Prupe.6G257900' => 'ppe', 'Psat3g001160' => 'psa', 'Psat6g181880' => 'psa', 'Psat7g233720' => 'psa', 'PSO063G7587' => 'pso', 'PSO339G2145' => 'pso', 'PSO339G3369' => 'pso', 'PSO478G2747' => 'pso', 'PSO513G0140' => 'pso', 'PSO782G1614' => 'pso', 'PSO782G4889' => 'pso', 'PSO782G5485' => 'pso', 'PSO801G0241' => 'pso', 'QL07p048854' => 'qlo', 'QL08p046745' => 'qlo', 'QL08p052606' => 'qlo', 'QL08p053414' => 'qlo', 'QL08p054868' => 'qlo', 'RcHm_v2.0_Chr1g0350251' => 'rch', 'RcHm_v2.0_Chr1g0360851' => 'rch', 'RcHm_v2.0_Chr1g0362791' => 'rch', 'RcHm_v2.0_Chr3g0466281' => 'rch', 'RcHm_v2.0_Chr7g0201481' => 'rch', 'Rhsim01G0148600' => 'rsi', 'Rhsim05G0194400' => 'rsi', 'Rhsim07G0000700' => 'rsi', 'Rhsim07G0000800' => 'rsi', 'Rhsim07G0027900' => 'rsi', 'Rhsim09G0149500' => 'rsi', 'RhsimUnG0186900' => 'rsi', 'Sabra01G0089900' => 'sbr', 'Sabra02G0114700' => 'sbr', 'Sabra02G0116300' => 'sbr', 'Sabra03G0080100' => 'sbr', 'Sabra08G0024300' => 'sbr', 'Sabra10G0174300' => 'sbr', 'Sabra14G0048900' => 'sbr', 'Sabra14G0076500' => 'sbr', 'SalBow5G2513' => 'sbo', 'Sc01g0002300' => 'sci', 'Sc01g0004450' => 'sci', 'Sc06g0001680' => 'sci', 'Sc23g0003580' => 'sci', 'Sed0000913' => 'sed', 'Sed0001655' => 'sed', 'Sed0007745' => 'sed', 'Sed0010951' => 'sed', 'Sed0017599' => 'sed', 'Sed0021405' => 'sed', 'Sed0022810' => 'sed', 'SEGI_07099' => 'sgi', 'SEGI_11931' => 'sgi', 'SEGI_13187' => 'sgi', 'SEGI_29958' => 'sgi', 'SEGI_36351' => 'sgi', 'SGA_v2.0_scaffold126G33770' => 'sas', 'SGA_v2.0_scaffold153G37003' => 'sas', 'SGA_v2.0_scaffold2G01359' => 'sas', 'SGA_v2.0_scaffold5G03064' => 'sas', 'SGA_v2.0_scaffold95G28903' => 'sas', 'SHI12701' => 'shi', 'SHI26410' => 'shi', 'SHI38997' => 'shi', 'SHI53759' => 'shi', 'SHI53886' => 'shi', 'SHI54714' => 'shi', 'SMO011G0041' => 'smo', 'SMO146G0251' => 'smo', 'SMO160G0004' => 'smo', 'SMO174G0057' => 'smo', 'SMO244G0089' => 'smo', 'SMO296G0011' => 'smo', 'Solyc01g091280.3' => 'sly', 'Solyc05g047610.3' => 'sly', 'Solyc05g047640.3' => 'sly', 'Solyc05g055630.3' => 'sly', 'Solyc10g018160.2' => 'sly', 'Solyc10g084820.2' => 'sly', 'Solyc10g086565.2' => 'sly', 'Sopen01g037030' => 'spe', 'Sopen05g027920' => 'spe', 'Sopen05g034070' => 'spe', 'Sopen10g007260' => 'spe', 'Sopen10g034260' => 'spe', 'Sopen10g035950' => 'spe', 'Sp3g07710' => 'spa', 'Sp4g27420' => 'spa', 'Sp5g02450' => 'spa', 'Sp6g01280' => 'spa', 'Sp6g38480' => 'spa', 'Sp7g20780' => 'spa', 'TAR374G1413' => 'tar', 'TAR623G1777' => 'tar', 'TAR629G2370' => 'tar', 'TAR633G1759' => 'tar', 'TAR636G3387' => 'tar', 'THA.LOC104802447' => 'tha', 'THA.LOC104813916' => 'tha', 'THA.LOC104816423' => 'tha', 'THA.LOC104817246' => 'tha', 'THA.LOC104825895' => 'tha', 'Thecc.01G335200' => 'tca', 'Thecc.01G377400' => 'tca', 'Thecc.03G262200' => 'tca', 'Thecc.05G036800' => 'tca', 'Thecc.10G080500' => 'tca', 'Thecc.10G080800' => 'tca', 'Thhalv10001560m.g' => 'esa', 'Thhalv10006120m.g' => 'esa', 'Thhalv10014375m.g' => 'esa', 'Thhalv10021264m.g' => 'esa', 'Thhalv10028856m.g' => 'esa', 'TPR.G1914' => 'tpr', 'TPR.G4757' => 'tpr', 'TPR.G5595' => 'tpr', 'TWI14G0952' => 'twi', 'TWI14G1307' => 'twi', 'TWI38G2143' => 'twi', 'TWI59G0826' => 'twi', 'TWI77G0527' => 'twi', 'TWI81G0150' => 'twi', 'unitig_21.g21018' => 'ugi', 'unitig_26.g9725' => 'ugi', 'unitig_744.g24653' => 'ugi', 'unitig_749.g13778' => 'ugi', 'unitig_899.g15035' => 'ugi', 'vmacro04296' => 'vma', 'vmacro04852' => 'vma', 'vmacro13404' => 'vma', 'vmacro20169' => 'vma', 'vmacro21014' => 'vma', 'VMungo0331G0237' => 'vmu', 'VMungo0331G0706' => 'vmu', 'VMungo0331G1361' => 'vmu', 'VMungo0331G1489' => 'vmu', 'VMungo0540G1037' => 'vmu', 'VMungo0720G2487' => 'vmu', 'VMungo0720G2721' => 'vmu', 'Zm00001eb086860' => 'zma', 'Zm00001eb104760' => 'zma', 'Zm00001eb148220' => 'zma', 'Zm00001eb259030' => 'zma', 'Zm00001eb289590' => 'zma', 'Zm00001eb420150' => 'zma' ) $gf_id = 'HOM05D000968' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000968' ) $data_identifier = 'HOM05D000968' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 19, 'bol' => (int) 9, 'bra' => (int) 12, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 5, 'ccan' => (int) 7, 'cde' => (int) 5, 'cfa' => (int) 8, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 4, 'dca' => (int) 5, 'din' => (int) 5, 'dzi' => (int) 12, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 25, 'fve' => (int) 5, 'gma' => (int) 9, 'ghi' => (int) 18, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 7, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 5, 'sun' => (int) 2, 'lal' => (int) 9, 'lja' => (int) 5, 'lonja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 9, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 2, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 3, 'stu' => (int) 6, 'pvu' => (int) 4, 'ptr' => (int) 8, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 3, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 1, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 5, 'sas' => (int) 5, 'shi' => (int) 6, 'smo' => (int) 6, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 3, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420150' $species_info = array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ) $local_species = 'pco' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000968', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p31690' => 'bna', 'A03p36040' => 'bna', 'A03p53730' => 'bna', 'A04p01410' => 'bna', 'A05p05420' => 'bna', 'A05p39630' => 'bna', 'A05p39640' => 'bna', 'A09p00970' => 'bna', 'A09p53060' => 'bna', 'A10p31890' => 'bna', 'Aa31LG10G15040' => 'aar', 'Aa31LG1G21090' => 'aar', 'Aa31LG1G26900' => 'aar', 'Aa31LG3G1820' => 'aar', 'Aa31LG5G1100' => 'aar', 'Aa31LG6G4740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2265' => 'aag', 'Actinidia07998' => 'ach', 'Actinidia11266' => 'ach', 'Actinidia12682' => 'ach', 'Actinidia26479' => 'ach', 'Actinidia31406' => 'ach', 'Actinidia32437' => 'ach', 'Actinidia38862' => 'ach', 'Ah.05g174230' => 'amhyb', 'Ah.05g179070' => 'amhyb', 'Ah.05g179090' => 'amhyb', 'Ah.12g059950' => 'amhyb', 'AL3G20480' => 'aly', 'AL4G44520' => 'aly', 'AL5G43110' => 'aly', 'AL6G13890' => 'aly', 'AL6G52620' => 'aly', 'AL7G30830' => 'aly', 'Aqoxy1G00899' => 'aox', 'Aqoxy5G04333' => 'aox', 'Aqoxy7G00641' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3IZ0NN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4EF6AW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W9P8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79GA3M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C43NQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFCU6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G95YVJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCHK29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LU1UG8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX91RN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGB4B1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8DA0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9H7JI' => 'arhy', 'AT3G09320' => 'ath', 'AT3G60800' => 'ath', 'AT4G00840' => 'ath', 'AT4G22750' => 'ath', 'AT5G04270' => 'ath', 'ATR0090G003' => 'atr', 'ATR0559G349' => 'atr', 'ATR0680G261' => 'atr', 'ATR0810G048' => 'atr', 'Atru.chr12.831' => 'acertr', 'Atru.chr5.303' => 'acertr', 'Atru.chr5.748' => 'acertr', 'Atru.chr8.1999' => 'acertr', 'Atru.chr9.1436' => 'acertr', 'AUR62004211' => 'cqu', 'AUR62004548' => 'cqu', 'AUR62013637' => 'cqu', 'AUR62022662' => 'cqu', 'AUR62025777' => 'cqu', 'AUR62042386' => 'cqu', 'BcaB01g02310' => 'bca', 'BcaB01g06062' => 'bca', 'BcaB02g08975' => 'bca', 'BcaB02g08980' => 'bca', 'BcaC01g04228' => 'bca', 'BcaC01g06830' => 'bca', 'BcaC02g10186' => 'bca', 'BcaC02g12214' => 'bca', 'BcaC04g24101' => 'bca', 'BcaC05g29520' => 'bca', 'BcaC05g29661' => 'bca', 'BcaC06g32130' => 'bca', 'BcaC06g32131' => 'bca', 'BcaC07g40601' => 'bca', 'BcaC07g42641' => 'bca', 'BcaNung01038' => 'bca', 'BcaNung01676' => 'bca', 'BcaNung02480' => 'bca', 'BcaNung07376' => 'bca', 'BolC3t16146H' => 'bol', 'BolC3t16637H' => 'bol', 'BolC4t22257H' => 'bol', 'BolC4t24728H' => 'bol', 'BolC5t34517H' => 'bol', 'BolC7t45703H' => 'bol', 'BolC8t51166H' => 'bol', 'BolC9t53038H' => 'bol', 'BolC9t60000H' => 'bol', 'BraA01t01345Z' => 'bra', 'BraA01t01346Z' => 'bra', 'BraA01t01348Z' => 'bra', 'BraA03t12347Z' => 'bra', 'BraA03t12775Z' => 'bra', 'BraA03t14439Z' => 'bra', 'BraA04t15860Z' => 'bra', 'BraA05t19511Z' => 'bra', 'BraA05t22746Z' => 'bra', 'BraA09t35767Z' => 'bra', 'BraA09t40732Z' => 'bra', 'BraA10t45233Z' => 'bra', 'C03p38720' => 'bna', 'C03p43680' => 'bna', 'C04p06350' => 'bna', 'C04p31800' => 'bna', 'C05p58680' => 'bna', 'C07p52110' => 'bna', 'C08p35760' => 'bna', 'C09p01050' => 'bna', 'C09p72600' => 'bna', 'CAN.G106.2' => 'can', 'CAN.G1482.1' => 'can', 'CAN.G324.12' => 'can', 'CAN.G388.20' => 'can', 'CAN.G412.7' => 'can', 'CAN.G694.32' => 'can', 'CAN.G92.12' => 'can', 'CANSAT11G2353' => 'cansat', 'CANSAT21G1398' => 'cansat', 'CANSAT56G2456' => 'cansat', 'CANSAT56G3031' => 'cansat', 'CANSAT56G4539' => 'cansat', 'CARHR083680' => 'chi', 'CARHR171190' => 'chi', 'CARHR209010' => 'chi', 'CARHR229680' => 'chi', 'CARHR249490' => 'chi', 'Carub.0003s0844' => 'cru', 'Carub.0005s2755' => 'cru', 'Carub.0006s0322' => 'cru', 'Carub.0006s3586' => 'cru', 'Carub.0007s1855' => 'cru', 'Ca_07808_v3' => 'car', 'Ca_09535_v3' => 'car', 'Ca_10548_v3' => 'car', 'Ca_19913_v3' => 'car', 'Ca_19916_v3' => 'car', 'Ca_19975_v3' => 'car', 'CBR_g22876' => 'cbr', 'CBR_g22879' => 'cbr', 'CBR_g38491' => 'cbr', 'CBR_g54185' => 'cbr', 'CBR_g54190' => 'cbr', 'Cc02_g11020' => 'ccan', 'Cc02_g23920' => 'ccan', 'Cc02_g39860' => 'ccan', 'Cc02_g39870' => 'ccan', 'Cc03_g06760' => 'ccan', 'Cc06_g02450' => 'ccan', 'Cc09_g09450' => 'ccan', 'CDE02G1959' => 'cde', 'CDE04G0600' => 'cde', 'CDE07G1996' => 'cde', 'CDE07G2078' => 'cde', 'CDE11G0611' => 'cde', 'Cfa001683' => 'cfa', 'Cfa001734' => 'cfa', 'Cfa001737' => 'cfa', 'Cfa003751' => 'cfa', 'Cfa012019' => 'cfa', 'Cfa017353' => 'cfa', 'Cfa017732' => 'cfa', 'Cfa022464' => 'cfa', 'Ciclev10012400m.g' => 'ccl', 'Ciclev10021242m.g' => 'ccl', 'Ciclev10021302m.g' => 'ccl', 'Ciclev10021463m.g' => 'ccl', 'Ciclev10032359m.g' => 'ccl', 'CiPaw.01G081000' => 'cil', 'CiPaw.01G262500' => 'cil', 'CiPaw.01G269800' => 'cil', 'CiPaw.02G168400' => 'cil', 'CiPaw.05G119500' => 'cil', 'CiPaw.11G147300' => 'cil', 'ClCG01G003630' => 'cla', 'ClCG05G000510' => 'cla', 'ClCG05G002300' => 'cla', 'ClCG08G007650' => 'cla', 'ClCG10G021250' => 'cla', 'COL.COLO4_06218' => 'col', 'COL.COLO4_12538' => 'col', 'COL.COLO4_14775' => 'col', 'COL.COLO4_23875' => 'col', 'Cpa.g.sc141.16' => 'cpa', 'Cpa.g.sc169.16' => 'cpa', 'Cpa.g.sc244.4' => 'cpa', 'Cpa.g.sc244.5' => 'cpa', 'Cpa.g.sc29.87' => 'cpa', 'Cpa.g.sc53.115' => 'cpa', 'Cre03.g207502' => 'cre', 'Cre06.g277000' => 'cre', 'Cre09.g394050' => 'cre', 'CsaV3_3G007680' => 'csa', 'CsaV3_3G009710' => 'csa', 'CsaV3_3G034790' => 'csa', 'CsaV3_5G003750' => 'csa', 'CsaV3_6G036620' => 'csa', 'CSS0002288' => 'camsi', 'CSS0011250' => 'camsi', 'CSS0021619' => 'camsi', 'CSS0046701' => 'camsi', 'DCAR_006420' => 'dca', 'DCAR_006865' => 'dca', 'DCAR_008558' => 'dca', 'DCAR_028754' => 'dca', 'DCAR_028755' => 'dca', 'Dinv31218' => 'din', 'Dinv32371' => 'din', 'Dinv34250' => 'din', 'Dinv37156' => 'din', 'Dinv43704' => 'din', 'Duzib093G1811' => 'dzi', 'Duzib106G1622' => 'dzi', 'Duzib114G0504' => 'dzi', 'Duzib128G0338' => 'dzi', 'Duzib128G1577' => 'dzi', 'Duzib133G0104' => 'dzi', 'Duzib133G1080' => 'dzi', 'Duzib138G0324' => 'dzi', 'Duzib138G0394' => 'dzi', 'Duzib205G0122' => 'dzi', 'Duzib268G1020' => 'dzi', 'Duzib268G1359' => 'dzi', 'ECA232G3929' => 'eca', 'ECA236G2210' => 'eca', 'ECA236G2287' => 'eca', 'ECA240G4568' => 'eca', 'ECA247G0894' => 'eca', 'EL10Ac1g00200' => 'bvu', 'EL10Ac1g00886' => 'bvu', 'EL10As1g23091' => 'bvu', 'EL10As1g23092' => 'bvu', 'Eucgr.A01284' => 'egr', 'Eucgr.A01285' => 'egr', 'Eucgr.D02456' => 'egr', 'Eucgr.E00018' => 'egr', 'Eucgr.E01439' => 'egr', 'Eucgr.G02859' => 'egr', 'FAN01G0168' => 'fan', 'FAN01G0453' => 'fan', 'FAN01G2761' => 'fan', 'FAN02G1239' => 'fan', 'FAN03G0645' => 'fan', 'FAN03G2707' => 'fan', 'FAN03G2978' => 'fan', 'FAN04G0227' => 'fan', 'FAN06G0091' => 'fan', 'FAN06G1418' => 'fan', 'FAN06G1512' => 'fan', 'FAN06G1986' => 'fan', 'FAN06G2905' => 'fan', 'FAN06G4325' => 'fan', 'FAN08G0033' => 'fan', 'FAN09G0642' => 'fan', 'FAN10G1763' => 'fan', 'FAN10G2026' => 'fan', 'FAN10G2513' => 'fan', 'FAN10G3402' => 'fan', 'FAN10G3564' => 'fan', 'FAN10G3987' => 'fan', 'FAN13G1490' => 'fan', 'FAN14G5857' => 'fan', 'FAN18G1188' => 'fan', 'FvH4_5g00750' => 'fve', 'FvH4_6g13410' => 'fve', 'FvH4_7g11740' => 'fve', 'FvH4_7g17410' => 'fve', 'FvH4_7g18860' => 'fve', 'Glyma.01G099100' => 'gma', 'Glyma.01G142300' => 'gma', 'Glyma.03G025500' => 'gma', 'Glyma.03G069700' => 'gma', 'Glyma.03G260000' => 'gma', 'Glyma.09G269800' => 'gma', 'Glyma.10G208700' => 'gma', 'Glyma.18G220400' => 'gma', 'Glyma.20G182000' => 'gma', 'Gohir.A01G221726' => 'ghi', 'Gohir.A07G134600' => 'ghi', 'Gohir.A07G146000' => 'ghi', 'Gohir.A08G173900' => 'ghi', 'Gohir.A09G194900' => 'ghi', 'Gohir.A10G204100' => 'ghi', 'Gohir.A11G080600' => 'ghi', 'Gohir.A11G327500' => 'ghi', 'Gohir.A12G101800' => 'ghi', 'Gohir.D01G211200' => 'ghi', 'Gohir.D07G139200' => 'ghi', 'Gohir.D07G152100' => 'ghi', 'Gohir.D08G192600' => 'ghi', 'Gohir.D09G189200' => 'ghi', 'Gohir.D10G212000' => 'ghi', 'Gohir.D11G085200' => 'ghi', 'Gohir.D11G346400' => 'ghi', 'Gohir.D12G104800' => 'ghi', 'Gorai.001G151300' => 'gra', 'Gorai.001G174100' => 'gra', 'Gorai.002G257000' => 'gra', 'Gorai.004G202600' => 'gra', 'Gorai.007G090900' => 'gra', 'Gorai.007G376700' => 'gra', 'Gorai.008G114100' => 'gra', 'Gorai.011G237900' => 'gra', 'GSVIVG01005450001' => 'vvi', 'GSVIVG01016232001' => 'vvi', 'GSVIVG01026157001' => 'vvi', 'GSVIVG01027419001' => 'vvi', 'GSVIVG01027631001' => 'vvi', 'GSVIVG01034143001' => 'vvi', 'HanXRQChr03g0093921' => 'han', 'HanXRQChr04g0120001' => 'han', 'HanXRQChr04g0122561' => 'han', 'HanXRQChr09g0246851' => 'han', 'HanXRQChr10g0293311' => 'han', 'HanXRQChr13g0425231' => 'han', 'HanXRQChr16g0532571' => 'han', 'Haze_09050' => 'cav', 'Haze_15715' => 'cav', 'Haze_15716' => 'cav', 'Haze_16803' => 'cav', 'Haze_16850' => 'cav', 'Hma1.2p1_0301F.1_g118655' => 'hma', 'Hma1.2p1_0309F.1_g120590' => 'hma', 'Hma1.2p1_0936F.1_g238900' => 'hma', 'Hma1.2p1_3552F.1_g336740' => 'hma', 'HPP92_003520' => 'vpl', 'HPP92_006628' => 'vpl', 'HPP92_006645' => 'vpl', 'HPP92_014669' => 'vpl', 'HPP92_015077' => 'vpl', 'Hund16742' => 'sun', 'Hund17022' => 'sun', 'Lalb_Chr02g0152131' => 'lal', 'Lalb_Chr05g0225371' => 'lal', 'Lalb_Chr07g0189841' => 'lal', 'Lalb_Chr07g0192961' => 'lal', 'Lalb_Chr12g0208221' => 'lal', 'Lalb_Chr13g0291211' => 'lal', 'Lalb_Chr13g0291781' => 'lal', 'Lalb_Chr18g0044651' => 'lal', 'Lalb_Chr21g0313731' => 'lal', 'Lj1g0022533' => 'lja', 'Lj2A18T50' => 'lonja', 'Lj2A92G93' => 'lonja', 'Lj3A965T73' => 'lonja', 'Lj3g0000673' => 'lja', 'Lj3g0002666' => 'lja', 'Lj4g0016985' => 'lja', 'Lj5g0003625' => 'lja', 'Lj7A529G36' => 'lonja', 'Lj9A569T49' => 'lonja', 'Lj9A604T63' => 'lonja', 'Lsat_1_v5_gn_3_132060' => 'lsa', 'Lsat_1_v5_gn_4_68941' => 'lsa', 'Lsat_1_v5_gn_5_95580' => 'lsa', 'Lsat_1_v5_gn_7_161' => 'lsa', 'Lsat_1_v5_gn_7_7041' => 'lsa', 'Lsat_1_v5_gn_9_33481' => 'lsa', 'Lsat_1_v5_gn_9_68260' => 'lsa', 'Manes.01G073100' => 'mes', 'Manes.01G266300' => 'mes', 'Manes.02G033300' => 'mes', 'Manes.05G017900' => 'mes', 'Manes.05G046100' => 'mes', 'Manes.08G080900' => 'mes', 'Manes.10G049400' => 'mes', 'Mapoly0009s0186' => 'mpo', 'Mapoly0036s0118' => 'mpo', 'Mapoly0101s0046' => 'mpo', 'MBI04_g30218_MAGBIO' => 'mbi', 'MBI04_g35564_MAGBIO' => 'mbi', 'MBI12_g34011_MAGBIO' => 'mbi', 'MBI14_g04655_MAGBIO' => 'mbi', 'MCO07G653' => 'mco', 'MCO10G173' => 'mco', 'MD01G1087100' => 'mdo', 'MD01G1104200' => 'mdo', 'MD02G1205100' => 'mdo', 'MD04G1079200' => 'mdo', 'MD04G1131400' => 'mdo', 'MD07G1121600' => 'mdo', 'MD07G1157300' => 'mdo', 'MD07G1171000' => 'mdo', 'MD12G1144500' => 'mdo', 'Medtr1g094610' => 'mtr', 'Medtr4g021795' => 'mtr', 'Medtr4g023760' => 'mtr', 'Medtr7g118050' => 'mtr', 'MELO3C005582.2' => 'cme', 'MELO3C005989.2' => 'cme', 'MELO3C006192.2' => 'cme', 'MELO3C009248.2' => 'cme', 'MELO3C019817.2' => 'cme', 'Migut.B01625' => 'egut', 'Migut.B01915' => 'egut', 'Migut.F01721' => 'egut', 'Migut.J00314' => 'egut', 'MSTRG.20742' => 'ama', 'MSTRG.8134' => 'ama', 'Nitab4.5_0000096g0010' => 'nta', 'Nitab4.5_0000202g0030' => 'nta', 'Nitab4.5_0000216g0370' => 'nta', 'Nitab4.5_0000457g0230' => 'nta', 'Nitab4.5_0001702g0170' => 'nta', 'Nitab4.5_0003607g0010' => 'nta', 'Nitab4.5_0004917g0020' => 'nta', 'Nitab4.5_0007059g0010' => 'nta', 'Nitab4.5_0007184g0010' => 'nta', 'Nitab4.5_0007346g0020' => 'nta', 'Nn1g00410' => 'nnu', 'Nn1g01252' => 'nnu', 'Nn2g11168' => 'nnu', 'Nn2g13403' => 'nnu', 'Nn2g13760' => 'nnu', 'Nn4g26380' => 'nnu', 'Oeu000806.2' => 'oeu', 'Oeu005788.1' => 'oeu', 'Oeu006900.3' => 'oeu', 'Oeu007797.1' => 'oeu', 'Oeu011932.1' => 'oeu', 'Oeu022739.1' => 'oeu', 'Oeu037918.1' => 'oeu', 'Oeu055490.2' => 'oeu', 'Os01g0844400' => 'osa', 'Os02g0819100' => 'osa', 'Os03g0804300' => 'osa', 'Os05g0458000' => 'osa', 'Os07g0467800' => 'osa', 'Os12g0602200' => 'osa', 'Peaxi162Scf00013g03444' => 'pax', 'Peaxi162Scf00094g01120' => 'pax', 'Peaxi162Scf00191g01211' => 'pax', 'Peaxi162Scf00238g01110' => 'pax', 'Peaxi162Scf00330g00719' => 'pax', 'Peaxi162Scf00627g00018' => 'pax', 'PGR031G2686' => 'pgr', 'PGR042G0809' => 'pgr', 'PGR142G0193' => 'pgr', 'PGSC0003DMG400011066' => 'stu', 'PGSC0003DMG400012041' => 'stu', 'PGSC0003DMG400013678' => 'stu', 'PGSC0003DMG400023477' => 'stu', 'PGSC0003DMG400025956' => 'stu', 'PGSC0003DMG401019151' => 'stu', 'Phvul.006G116400' => 'pvu', 'Phvul.007G097300' => 'pvu', 'Phvul.010G015000' => 'pvu', 'Phvul.010G083900' => 'pvu', 'Potri.001G117100' => 'ptr', 'Potri.002G147300' => 'ptr', 'Potri.003G115600' => 'ptr', 'Potri.006G087400' => 'ptr', 'Potri.010G226100' => 'ptr', 'Potri.014G069200' => 'ptr', 'Potri.014G104000' => 'ptr', 'Potri.016G100200' => 'ptr', 'Pp3c10_20450' => 'ppa', 'Pp3c1_42400' => 'ppa', 'Pp3c3_24390' => 'ppa', 'Pp3c3_2860' => 'ppa', 'PRCOL_00003193' => 'pco', 'Prupe.2G144500' => 'ppe', 'Prupe.2G195700' => 'ppe', 'Prupe.2G209800' => 'ppe', 'Prupe.5G080000' => 'ppe', 'Prupe.6G257900' => 'ppe', 'Psat3g001160' => 'psa', 'Psat6g181880' => 'psa', 'Psat7g233720' => 'psa', 'PSO063G7587' => 'pso', 'PSO339G2145' => 'pso', 'PSO339G3369' => 'pso', 'PSO478G2747' => 'pso', 'PSO513G0140' => 'pso', 'PSO782G1614' => 'pso', 'PSO782G4889' => 'pso', 'PSO782G5485' => 'pso', 'PSO801G0241' => 'pso', 'QL07p048854' => 'qlo', 'QL08p046745' => 'qlo', 'QL08p052606' => 'qlo', 'QL08p053414' => 'qlo', 'QL08p054868' => 'qlo', 'RcHm_v2.0_Chr1g0350251' => 'rch', 'RcHm_v2.0_Chr1g0360851' => 'rch', 'RcHm_v2.0_Chr1g0362791' => 'rch', 'RcHm_v2.0_Chr3g0466281' => 'rch', 'RcHm_v2.0_Chr7g0201481' => 'rch', 'Rhsim01G0148600' => 'rsi', 'Rhsim05G0194400' => 'rsi', 'Rhsim07G0000700' => 'rsi', 'Rhsim07G0000800' => 'rsi', 'Rhsim07G0027900' => 'rsi', 'Rhsim09G0149500' => 'rsi', 'RhsimUnG0186900' => 'rsi', 'Sabra01G0089900' => 'sbr', 'Sabra02G0114700' => 'sbr', 'Sabra02G0116300' => 'sbr', 'Sabra03G0080100' => 'sbr', 'Sabra08G0024300' => 'sbr', 'Sabra10G0174300' => 'sbr', 'Sabra14G0048900' => 'sbr', 'Sabra14G0076500' => 'sbr', 'SalBow5G2513' => 'sbo', 'Sc01g0002300' => 'sci', 'Sc01g0004450' => 'sci', 'Sc06g0001680' => 'sci', 'Sc23g0003580' => 'sci', 'Sed0000913' => 'sed', 'Sed0001655' => 'sed', 'Sed0007745' => 'sed', 'Sed0010951' => 'sed', 'Sed0017599' => 'sed', 'Sed0021405' => 'sed', 'Sed0022810' => 'sed', 'SEGI_07099' => 'sgi', 'SEGI_11931' => 'sgi', 'SEGI_13187' => 'sgi', 'SEGI_29958' => 'sgi', 'SEGI_36351' => 'sgi', 'SGA_v2.0_scaffold126G33770' => 'sas', 'SGA_v2.0_scaffold153G37003' => 'sas', 'SGA_v2.0_scaffold2G01359' => 'sas', 'SGA_v2.0_scaffold5G03064' => 'sas', 'SGA_v2.0_scaffold95G28903' => 'sas', 'SHI12701' => 'shi', 'SHI26410' => 'shi', 'SHI38997' => 'shi', 'SHI53759' => 'shi', 'SHI53886' => 'shi', 'SHI54714' => 'shi', 'SMO011G0041' => 'smo', 'SMO146G0251' => 'smo', 'SMO160G0004' => 'smo', 'SMO174G0057' => 'smo', 'SMO244G0089' => 'smo', 'SMO296G0011' => 'smo', 'Solyc01g091280.3' => 'sly', 'Solyc05g047610.3' => 'sly', 'Solyc05g047640.3' => 'sly', 'Solyc05g055630.3' => 'sly', 'Solyc10g018160.2' => 'sly', 'Solyc10g084820.2' => 'sly', 'Solyc10g086565.2' => 'sly', 'Sopen01g037030' => 'spe', 'Sopen05g027920' => 'spe', 'Sopen05g034070' => 'spe', 'Sopen10g007260' => 'spe', 'Sopen10g034260' => 'spe', 'Sopen10g035950' => 'spe', 'Sp3g07710' => 'spa', 'Sp4g27420' => 'spa', 'Sp5g02450' => 'spa', 'Sp6g01280' => 'spa', 'Sp6g38480' => 'spa', 'Sp7g20780' => 'spa', 'TAR374G1413' => 'tar', 'TAR623G1777' => 'tar', 'TAR629G2370' => 'tar', 'TAR633G1759' => 'tar', 'TAR636G3387' => 'tar', 'THA.LOC104802447' => 'tha', 'THA.LOC104813916' => 'tha', 'THA.LOC104816423' => 'tha', 'THA.LOC104817246' => 'tha', 'THA.LOC104825895' => 'tha', 'Thecc.01G335200' => 'tca', 'Thecc.01G377400' => 'tca', 'Thecc.03G262200' => 'tca', 'Thecc.05G036800' => 'tca', 'Thecc.10G080500' => 'tca', 'Thecc.10G080800' => 'tca', 'Thhalv10001560m.g' => 'esa', 'Thhalv10006120m.g' => 'esa', 'Thhalv10014375m.g' => 'esa', 'Thhalv10021264m.g' => 'esa', 'Thhalv10028856m.g' => 'esa', 'TPR.G1914' => 'tpr', 'TPR.G4757' => 'tpr', 'TPR.G5595' => 'tpr', 'TWI14G0952' => 'twi', 'TWI14G1307' => 'twi', 'TWI38G2143' => 'twi', 'TWI59G0826' => 'twi', 'TWI77G0527' => 'twi', 'TWI81G0150' => 'twi', 'unitig_21.g21018' => 'ugi', 'unitig_26.g9725' => 'ugi', 'unitig_744.g24653' => 'ugi', 'unitig_749.g13778' => 'ugi', 'unitig_899.g15035' => 'ugi', 'vmacro04296' => 'vma', 'vmacro04852' => 'vma', 'vmacro13404' => 'vma', 'vmacro20169' => 'vma', 'vmacro21014' => 'vma', 'VMungo0331G0237' => 'vmu', 'VMungo0331G0706' => 'vmu', 'VMungo0331G1361' => 'vmu', 'VMungo0331G1489' => 'vmu', 'VMungo0540G1037' => 'vmu', 'VMungo0720G2487' => 'vmu', 'VMungo0720G2721' => 'vmu', 'Zm00001eb086860' => 'zma', 'Zm00001eb104760' => 'zma', 'Zm00001eb148220' => 'zma', 'Zm00001eb259030' => 'zma', 'Zm00001eb289590' => 'zma', 'Zm00001eb420150' => 'zma' ), 'gf_id' => 'HOM05D000968', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000968' ), 'data_identifier' => 'HOM05D000968', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000968', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p31690' => 'bna', 'A03p36040' => 'bna', 'A03p53730' => 'bna', 'A04p01410' => 'bna', 'A05p05420' => 'bna', 'A05p39630' => 'bna', 'A05p39640' => 'bna', 'A09p00970' => 'bna', 'A09p53060' => 'bna', 'A10p31890' => 'bna', 'Aa31LG10G15040' => 'aar', 'Aa31LG1G21090' => 'aar', 'Aa31LG1G26900' => 'aar', 'Aa31LG3G1820' => 'aar', 'Aa31LG5G1100' => 'aar', 'Aa31LG6G4740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2265' => 'aag', 'Actinidia07998' => 'ach', 'Actinidia11266' => 'ach', 'Actinidia12682' => 'ach', 'Actinidia26479' => 'ach', 'Actinidia31406' => 'ach', 'Actinidia32437' => 'ach', 'Actinidia38862' => 'ach', 'Ah.05g174230' => 'amhyb', 'Ah.05g179070' => 'amhyb', 'Ah.05g179090' => 'amhyb', 'Ah.12g059950' => 'amhyb', 'AL3G20480' => 'aly', 'AL4G44520' => 'aly', 'AL5G43110' => 'aly', 'AL6G13890' => 'aly', 'AL6G52620' => 'aly', 'AL7G30830' => 'aly', 'Aqoxy1G00899' => 'aox', 'Aqoxy5G04333' => 'aox', 'Aqoxy7G00641' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3IZ0NN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4EF6AW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W9P8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79GA3M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C43NQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFCU6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G95YVJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCHK29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LU1UG8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX91RN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGB4B1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8DA0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9H7JI' => 'arhy', 'AT3G09320' => 'ath', 'AT3G60800' => 'ath', 'AT4G00840' => 'ath', 'AT4G22750' => 'ath', 'AT5G04270' => 'ath', 'ATR0090G003' => 'atr', 'ATR0559G349' => 'atr', 'ATR0680G261' => 'atr', 'ATR0810G048' => 'atr', 'Atru.chr12.831' => 'acertr', 'Atru.chr5.303' => 'acertr', 'Atru.chr5.748' => 'acertr', 'Atru.chr8.1999' => 'acertr', 'Atru.chr9.1436' => 'acertr', 'AUR62004211' => 'cqu', 'AUR62004548' => 'cqu', 'AUR62013637' => 'cqu', 'AUR62022662' => 'cqu', 'AUR62025777' => 'cqu', 'AUR62042386' => 'cqu', 'BcaB01g02310' => 'bca', 'BcaB01g06062' => 'bca', 'BcaB02g08975' => 'bca', 'BcaB02g08980' => 'bca', 'BcaC01g04228' => 'bca', 'BcaC01g06830' => 'bca', 'BcaC02g10186' => 'bca', 'BcaC02g12214' => 'bca', 'BcaC04g24101' => 'bca', 'BcaC05g29520' => 'bca', 'BcaC05g29661' => 'bca', 'BcaC06g32130' => 'bca', 'BcaC06g32131' => 'bca', 'BcaC07g40601' => 'bca', 'BcaC07g42641' => 'bca', 'BcaNung01038' => 'bca', 'BcaNung01676' => 'bca', 'BcaNung02480' => 'bca', 'BcaNung07376' => 'bca', 'BolC3t16146H' => 'bol', 'BolC3t16637H' => 'bol', 'BolC4t22257H' => 'bol', 'BolC4t24728H' => 'bol', 'BolC5t34517H' => 'bol', 'BolC7t45703H' => 'bol', 'BolC8t51166H' => 'bol', 'BolC9t53038H' => 'bol', 'BolC9t60000H' => 'bol', 'BraA01t01345Z' => 'bra', 'BraA01t01346Z' => 'bra', 'BraA01t01348Z' => 'bra', 'BraA03t12347Z' => 'bra', 'BraA03t12775Z' => 'bra', 'BraA03t14439Z' => 'bra', 'BraA04t15860Z' => 'bra', 'BraA05t19511Z' => 'bra', 'BraA05t22746Z' => 'bra', 'BraA09t35767Z' => 'bra', 'BraA09t40732Z' => 'bra', 'BraA10t45233Z' => 'bra', 'C03p38720' => 'bna', 'C03p43680' => 'bna', 'C04p06350' => 'bna', 'C04p31800' => 'bna', 'C05p58680' => 'bna', 'C07p52110' => 'bna', 'C08p35760' => 'bna', 'C09p01050' => 'bna', 'C09p72600' => 'bna', 'CAN.G106.2' => 'can', 'CAN.G1482.1' => 'can', 'CAN.G324.12' => 'can', 'CAN.G388.20' => 'can', 'CAN.G412.7' => 'can', 'CAN.G694.32' => 'can', 'CAN.G92.12' => 'can', 'CANSAT11G2353' => 'cansat', 'CANSAT21G1398' => 'cansat', 'CANSAT56G2456' => 'cansat', 'CANSAT56G3031' => 'cansat', 'CANSAT56G4539' => 'cansat', 'CARHR083680' => 'chi', 'CARHR171190' => 'chi', 'CARHR209010' => 'chi', 'CARHR229680' => 'chi', 'CARHR249490' => 'chi', 'Carub.0003s0844' => 'cru', 'Carub.0005s2755' => 'cru', 'Carub.0006s0322' => 'cru', 'Carub.0006s3586' => 'cru', 'Carub.0007s1855' => 'cru', 'Ca_07808_v3' => 'car', 'Ca_09535_v3' => 'car', 'Ca_10548_v3' => 'car', 'Ca_19913_v3' => 'car', 'Ca_19916_v3' => 'car', 'Ca_19975_v3' => 'car', 'CBR_g22876' => 'cbr', 'CBR_g22879' => 'cbr', 'CBR_g38491' => 'cbr', 'CBR_g54185' => 'cbr', 'CBR_g54190' => 'cbr', 'Cc02_g11020' => 'ccan', 'Cc02_g23920' => 'ccan', 'Cc02_g39860' => 'ccan', 'Cc02_g39870' => 'ccan', 'Cc03_g06760' => 'ccan', 'Cc06_g02450' => 'ccan', 'Cc09_g09450' => 'ccan', 'CDE02G1959' => 'cde', 'CDE04G0600' => 'cde', 'CDE07G1996' => 'cde', 'CDE07G2078' => 'cde', 'CDE11G0611' => 'cde', 'Cfa001683' => 'cfa', 'Cfa001734' => 'cfa', 'Cfa001737' => 'cfa', 'Cfa003751' => 'cfa', 'Cfa012019' => 'cfa', 'Cfa017353' => 'cfa', 'Cfa017732' => 'cfa', 'Cfa022464' => 'cfa', 'Ciclev10012400m.g' => 'ccl', 'Ciclev10021242m.g' => 'ccl', 'Ciclev10021302m.g' => 'ccl', 'Ciclev10021463m.g' => 'ccl', 'Ciclev10032359m.g' => 'ccl', 'CiPaw.01G081000' => 'cil', 'CiPaw.01G262500' => 'cil', 'CiPaw.01G269800' => 'cil', 'CiPaw.02G168400' => 'cil', 'CiPaw.05G119500' => 'cil', 'CiPaw.11G147300' => 'cil', 'ClCG01G003630' => 'cla', 'ClCG05G000510' => 'cla', 'ClCG05G002300' => 'cla', 'ClCG08G007650' => 'cla', 'ClCG10G021250' => 'cla', 'COL.COLO4_06218' => 'col', 'COL.COLO4_12538' => 'col', 'COL.COLO4_14775' => 'col', 'COL.COLO4_23875' => 'col', 'Cpa.g.sc141.16' => 'cpa', 'Cpa.g.sc169.16' => 'cpa', 'Cpa.g.sc244.4' => 'cpa', 'Cpa.g.sc244.5' => 'cpa', 'Cpa.g.sc29.87' => 'cpa', 'Cpa.g.sc53.115' => 'cpa', 'Cre03.g207502' => 'cre', 'Cre06.g277000' => 'cre', 'Cre09.g394050' => 'cre', 'CsaV3_3G007680' => 'csa', 'CsaV3_3G009710' => 'csa', 'CsaV3_3G034790' => 'csa', 'CsaV3_5G003750' => 'csa', 'CsaV3_6G036620' => 'csa', 'CSS0002288' => 'camsi', 'CSS0011250' => 'camsi', 'CSS0021619' => 'camsi', 'CSS0046701' => 'camsi', 'DCAR_006420' => 'dca', 'DCAR_006865' => 'dca', 'DCAR_008558' => 'dca', 'DCAR_028754' => 'dca', 'DCAR_028755' => 'dca', 'Dinv31218' => 'din', 'Dinv32371' => 'din', 'Dinv34250' => 'din', 'Dinv37156' => 'din', 'Dinv43704' => 'din', 'Duzib093G1811' => 'dzi', 'Duzib106G1622' => 'dzi', 'Duzib114G0504' => 'dzi', 'Duzib128G0338' => 'dzi', 'Duzib128G1577' => 'dzi', 'Duzib133G0104' => 'dzi', 'Duzib133G1080' => 'dzi', 'Duzib138G0324' => 'dzi', 'Duzib138G0394' => 'dzi', 'Duzib205G0122' => 'dzi', 'Duzib268G1020' => 'dzi', 'Duzib268G1359' => 'dzi', 'ECA232G3929' => 'eca', 'ECA236G2210' => 'eca', 'ECA236G2287' => 'eca', 'ECA240G4568' => 'eca', 'ECA247G0894' => 'eca', 'EL10Ac1g00200' => 'bvu', 'EL10Ac1g00886' => 'bvu', 'EL10As1g23091' => 'bvu', 'EL10As1g23092' => 'bvu', 'Eucgr.A01284' => 'egr', 'Eucgr.A01285' => 'egr', 'Eucgr.D02456' => 'egr', 'Eucgr.E00018' => 'egr', 'Eucgr.E01439' => 'egr', 'Eucgr.G02859' => 'egr', 'FAN01G0168' => 'fan', 'FAN01G0453' => 'fan', 'FAN01G2761' => 'fan', 'FAN02G1239' => 'fan', 'FAN03G0645' => 'fan', 'FAN03G2707' => 'fan', 'FAN03G2978' => 'fan', 'FAN04G0227' => 'fan', 'FAN06G0091' => 'fan', 'FAN06G1418' => 'fan', 'FAN06G1512' => 'fan', 'FAN06G1986' => 'fan', 'FAN06G2905' => 'fan', 'FAN06G4325' => 'fan', 'FAN08G0033' => 'fan', 'FAN09G0642' => 'fan', 'FAN10G1763' => 'fan', 'FAN10G2026' => 'fan', 'FAN10G2513' => 'fan', 'FAN10G3402' => 'fan', 'FAN10G3564' => 'fan', 'FAN10G3987' => 'fan', 'FAN13G1490' => 'fan', 'FAN14G5857' => 'fan', 'FAN18G1188' => 'fan', 'FvH4_5g00750' => 'fve', 'FvH4_6g13410' => 'fve', 'FvH4_7g11740' => 'fve', 'FvH4_7g17410' => 'fve', 'FvH4_7g18860' => 'fve', 'Glyma.01G099100' => 'gma', 'Glyma.01G142300' => 'gma', 'Glyma.03G025500' => 'gma', 'Glyma.03G069700' => 'gma', 'Glyma.03G260000' => 'gma', 'Glyma.09G269800' => 'gma', 'Glyma.10G208700' => 'gma', 'Glyma.18G220400' => 'gma', 'Glyma.20G182000' => 'gma', 'Gohir.A01G221726' => 'ghi', 'Gohir.A07G134600' => 'ghi', 'Gohir.A07G146000' => 'ghi', 'Gohir.A08G173900' => 'ghi', 'Gohir.A09G194900' => 'ghi', 'Gohir.A10G204100' => 'ghi', 'Gohir.A11G080600' => 'ghi', 'Gohir.A11G327500' => 'ghi', 'Gohir.A12G101800' => 'ghi', 'Gohir.D01G211200' => 'ghi', 'Gohir.D07G139200' => 'ghi', 'Gohir.D07G152100' => 'ghi', 'Gohir.D08G192600' => 'ghi', 'Gohir.D09G189200' => 'ghi', 'Gohir.D10G212000' => 'ghi', 'Gohir.D11G085200' => 'ghi', 'Gohir.D11G346400' => 'ghi', 'Gohir.D12G104800' => 'ghi', 'Gorai.001G151300' => 'gra', 'Gorai.001G174100' => 'gra', 'Gorai.002G257000' => 'gra', 'Gorai.004G202600' => 'gra', 'Gorai.007G090900' => 'gra', 'Gorai.007G376700' => 'gra', 'Gorai.008G114100' => 'gra', 'Gorai.011G237900' => 'gra', 'GSVIVG01005450001' => 'vvi', 'GSVIVG01016232001' => 'vvi', 'GSVIVG01026157001' => 'vvi', 'GSVIVG01027419001' => 'vvi', 'GSVIVG01027631001' => 'vvi', 'GSVIVG01034143001' => 'vvi', 'HanXRQChr03g0093921' => 'han', 'HanXRQChr04g0120001' => 'han', 'HanXRQChr04g0122561' => 'han', 'HanXRQChr09g0246851' => 'han', 'HanXRQChr10g0293311' => 'han', 'HanXRQChr13g0425231' => 'han', 'HanXRQChr16g0532571' => 'han', 'Haze_09050' => 'cav', 'Haze_15715' => 'cav', 'Haze_15716' => 'cav', 'Haze_16803' => 'cav', 'Haze_16850' => 'cav', 'Hma1.2p1_0301F.1_g118655' => 'hma', 'Hma1.2p1_0309F.1_g120590' => 'hma', 'Hma1.2p1_0936F.1_g238900' => 'hma', 'Hma1.2p1_3552F.1_g336740' => 'hma', 'HPP92_003520' => 'vpl', 'HPP92_006628' => 'vpl', 'HPP92_006645' => 'vpl', 'HPP92_014669' => 'vpl', 'HPP92_015077' => 'vpl', 'Hund16742' => 'sun', 'Hund17022' => 'sun', 'Lalb_Chr02g0152131' => 'lal', 'Lalb_Chr05g0225371' => 'lal', 'Lalb_Chr07g0189841' => 'lal', 'Lalb_Chr07g0192961' => 'lal', 'Lalb_Chr12g0208221' => 'lal', 'Lalb_Chr13g0291211' => 'lal', 'Lalb_Chr13g0291781' => 'lal', 'Lalb_Chr18g0044651' => 'lal', 'Lalb_Chr21g0313731' => 'lal', 'Lj1g0022533' => 'lja', 'Lj2A18T50' => 'lonja', 'Lj2A92G93' => 'lonja', 'Lj3A965T73' => 'lonja', 'Lj3g0000673' => 'lja', 'Lj3g0002666' => 'lja', 'Lj4g0016985' => 'lja', 'Lj5g0003625' => 'lja', 'Lj7A529G36' => 'lonja', 'Lj9A569T49' => 'lonja', 'Lj9A604T63' => 'lonja', 'Lsat_1_v5_gn_3_132060' => 'lsa', 'Lsat_1_v5_gn_4_68941' => 'lsa', 'Lsat_1_v5_gn_5_95580' => 'lsa', 'Lsat_1_v5_gn_7_161' => 'lsa', 'Lsat_1_v5_gn_7_7041' => 'lsa', 'Lsat_1_v5_gn_9_33481' => 'lsa', 'Lsat_1_v5_gn_9_68260' => 'lsa', 'Manes.01G073100' => 'mes', 'Manes.01G266300' => 'mes', 'Manes.02G033300' => 'mes', 'Manes.05G017900' => 'mes', 'Manes.05G046100' => 'mes', 'Manes.08G080900' => 'mes', 'Manes.10G049400' => 'mes', 'Mapoly0009s0186' => 'mpo', 'Mapoly0036s0118' => 'mpo', 'Mapoly0101s0046' => 'mpo', 'MBI04_g30218_MAGBIO' => 'mbi', 'MBI04_g35564_MAGBIO' => 'mbi', 'MBI12_g34011_MAGBIO' => 'mbi', 'MBI14_g04655_MAGBIO' => 'mbi', 'MCO07G653' => 'mco', 'MCO10G173' => 'mco', 'MD01G1087100' => 'mdo', 'MD01G1104200' => 'mdo', 'MD02G1205100' => 'mdo', 'MD04G1079200' => 'mdo', 'MD04G1131400' => 'mdo', 'MD07G1121600' => 'mdo', 'MD07G1157300' => 'mdo', 'MD07G1171000' => 'mdo', 'MD12G1144500' => 'mdo', 'Medtr1g094610' => 'mtr', 'Medtr4g021795' => 'mtr', 'Medtr4g023760' => 'mtr', 'Medtr7g118050' => 'mtr', 'MELO3C005582.2' => 'cme', 'MELO3C005989.2' => 'cme', 'MELO3C006192.2' => 'cme', 'MELO3C009248.2' => 'cme', 'MELO3C019817.2' => 'cme', 'Migut.B01625' => 'egut', 'Migut.B01915' => 'egut', 'Migut.F01721' => 'egut', 'Migut.J00314' => 'egut', 'MSTRG.20742' => 'ama', 'MSTRG.8134' => 'ama', 'Nitab4.5_0000096g0010' => 'nta', 'Nitab4.5_0000202g0030' => 'nta', 'Nitab4.5_0000216g0370' => 'nta', 'Nitab4.5_0000457g0230' => 'nta', 'Nitab4.5_0001702g0170' => 'nta', 'Nitab4.5_0003607g0010' => 'nta', 'Nitab4.5_0004917g0020' => 'nta', 'Nitab4.5_0007059g0010' => 'nta', 'Nitab4.5_0007184g0010' => 'nta', 'Nitab4.5_0007346g0020' => 'nta', 'Nn1g00410' => 'nnu', 'Nn1g01252' => 'nnu', 'Nn2g11168' => 'nnu', 'Nn2g13403' => 'nnu', 'Nn2g13760' => 'nnu', 'Nn4g26380' => 'nnu', 'Oeu000806.2' => 'oeu', 'Oeu005788.1' => 'oeu', 'Oeu006900.3' => 'oeu', 'Oeu007797.1' => 'oeu', 'Oeu011932.1' => 'oeu', 'Oeu022739.1' => 'oeu', 'Oeu037918.1' => 'oeu', 'Oeu055490.2' => 'oeu', 'Os01g0844400' => 'osa', 'Os02g0819100' => 'osa', 'Os03g0804300' => 'osa', 'Os05g0458000' => 'osa', 'Os07g0467800' => 'osa', 'Os12g0602200' => 'osa', 'Peaxi162Scf00013g03444' => 'pax', 'Peaxi162Scf00094g01120' => 'pax', 'Peaxi162Scf00191g01211' => 'pax', 'Peaxi162Scf00238g01110' => 'pax', 'Peaxi162Scf00330g00719' => 'pax', 'Peaxi162Scf00627g00018' => 'pax', 'PGR031G2686' => 'pgr', 'PGR042G0809' => 'pgr', 'PGR142G0193' => 'pgr', 'PGSC0003DMG400011066' => 'stu', 'PGSC0003DMG400012041' => 'stu', 'PGSC0003DMG400013678' => 'stu', 'PGSC0003DMG400023477' => 'stu', 'PGSC0003DMG400025956' => 'stu', 'PGSC0003DMG401019151' => 'stu', 'Phvul.006G116400' => 'pvu', 'Phvul.007G097300' => 'pvu', 'Phvul.010G015000' => 'pvu', 'Phvul.010G083900' => 'pvu', 'Potri.001G117100' => 'ptr', 'Potri.002G147300' => 'ptr', 'Potri.003G115600' => 'ptr', 'Potri.006G087400' => 'ptr', 'Potri.010G226100' => 'ptr', 'Potri.014G069200' => 'ptr', 'Potri.014G104000' => 'ptr', 'Potri.016G100200' => 'ptr', 'Pp3c10_20450' => 'ppa', 'Pp3c1_42400' => 'ppa', 'Pp3c3_24390' => 'ppa', 'Pp3c3_2860' => 'ppa', 'PRCOL_00003193' => 'pco', 'Prupe.2G144500' => 'ppe', 'Prupe.2G195700' => 'ppe', 'Prupe.2G209800' => 'ppe', 'Prupe.5G080000' => 'ppe', 'Prupe.6G257900' => 'ppe', 'Psat3g001160' => 'psa', 'Psat6g181880' => 'psa', 'Psat7g233720' => 'psa', 'PSO063G7587' => 'pso', 'PSO339G2145' => 'pso', 'PSO339G3369' => 'pso', 'PSO478G2747' => 'pso', 'PSO513G0140' => 'pso', 'PSO782G1614' => 'pso', 'PSO782G4889' => 'pso', 'PSO782G5485' => 'pso', 'PSO801G0241' => 'pso', 'QL07p048854' => 'qlo', 'QL08p046745' => 'qlo', 'QL08p052606' => 'qlo', 'QL08p053414' => 'qlo', 'QL08p054868' => 'qlo', 'RcHm_v2.0_Chr1g0350251' => 'rch', 'RcHm_v2.0_Chr1g0360851' => 'rch', 'RcHm_v2.0_Chr1g0362791' => 'rch', 'RcHm_v2.0_Chr3g0466281' => 'rch', 'RcHm_v2.0_Chr7g0201481' => 'rch', 'Rhsim01G0148600' => 'rsi', 'Rhsim05G0194400' => 'rsi', 'Rhsim07G0000700' => 'rsi', 'Rhsim07G0000800' => 'rsi', 'Rhsim07G0027900' => 'rsi', 'Rhsim09G0149500' => 'rsi', 'RhsimUnG0186900' => 'rsi', 'Sabra01G0089900' => 'sbr', 'Sabra02G0114700' => 'sbr', 'Sabra02G0116300' => 'sbr', 'Sabra03G0080100' => 'sbr', 'Sabra08G0024300' => 'sbr', 'Sabra10G0174300' => 'sbr', 'Sabra14G0048900' => 'sbr', 'Sabra14G0076500' => 'sbr', 'SalBow5G2513' => 'sbo', 'Sc01g0002300' => 'sci', 'Sc01g0004450' => 'sci', 'Sc06g0001680' => 'sci', 'Sc23g0003580' => 'sci', 'Sed0000913' => 'sed', 'Sed0001655' => 'sed', 'Sed0007745' => 'sed', 'Sed0010951' => 'sed', 'Sed0017599' => 'sed', 'Sed0021405' => 'sed', 'Sed0022810' => 'sed', 'SEGI_07099' => 'sgi', 'SEGI_11931' => 'sgi', 'SEGI_13187' => 'sgi', 'SEGI_29958' => 'sgi', 'SEGI_36351' => 'sgi', 'SGA_v2.0_scaffold126G33770' => 'sas', 'SGA_v2.0_scaffold153G37003' => 'sas', 'SGA_v2.0_scaffold2G01359' => 'sas', 'SGA_v2.0_scaffold5G03064' => 'sas', 'SGA_v2.0_scaffold95G28903' => 'sas', 'SHI12701' => 'shi', 'SHI26410' => 'shi', 'SHI38997' => 'shi', 'SHI53759' => 'shi', 'SHI53886' => 'shi', 'SHI54714' => 'shi', 'SMO011G0041' => 'smo', 'SMO146G0251' => 'smo', 'SMO160G0004' => 'smo', 'SMO174G0057' => 'smo', 'SMO244G0089' => 'smo', 'SMO296G0011' => 'smo', 'Solyc01g091280.3' => 'sly', 'Solyc05g047610.3' => 'sly', 'Solyc05g047640.3' => 'sly', 'Solyc05g055630.3' => 'sly', 'Solyc10g018160.2' => 'sly', 'Solyc10g084820.2' => 'sly', 'Solyc10g086565.2' => 'sly', 'Sopen01g037030' => 'spe', 'Sopen05g027920' => 'spe', 'Sopen05g034070' => 'spe', 'Sopen10g007260' => 'spe', 'Sopen10g034260' => 'spe', 'Sopen10g035950' => 'spe', 'Sp3g07710' => 'spa', 'Sp4g27420' => 'spa', 'Sp5g02450' => 'spa', 'Sp6g01280' => 'spa', 'Sp6g38480' => 'spa', 'Sp7g20780' => 'spa', 'TAR374G1413' => 'tar', 'TAR623G1777' => 'tar', 'TAR629G2370' => 'tar', 'TAR633G1759' => 'tar', 'TAR636G3387' => 'tar', 'THA.LOC104802447' => 'tha', 'THA.LOC104813916' => 'tha', 'THA.LOC104816423' => 'tha', 'THA.LOC104817246' => 'tha', 'THA.LOC104825895' => 'tha', 'Thecc.01G335200' => 'tca', 'Thecc.01G377400' => 'tca', 'Thecc.03G262200' => 'tca', 'Thecc.05G036800' => 'tca', 'Thecc.10G080500' => 'tca', 'Thecc.10G080800' => 'tca', 'Thhalv10001560m.g' => 'esa', 'Thhalv10006120m.g' => 'esa', 'Thhalv10014375m.g' => 'esa', 'Thhalv10021264m.g' => 'esa', 'Thhalv10028856m.g' => 'esa', 'TPR.G1914' => 'tpr', 'TPR.G4757' => 'tpr', 'TPR.G5595' => 'tpr', 'TWI14G0952' => 'twi', 'TWI14G1307' => 'twi', 'TWI38G2143' => 'twi', 'TWI59G0826' => 'twi', 'TWI77G0527' => 'twi', 'TWI81G0150' => 'twi', 'unitig_21.g21018' => 'ugi', 'unitig_26.g9725' => 'ugi', 'unitig_744.g24653' => 'ugi', 'unitig_749.g13778' => 'ugi', 'unitig_899.g15035' => 'ugi', 'vmacro04296' => 'vma', 'vmacro04852' => 'vma', 'vmacro13404' => 'vma', 'vmacro20169' => 'vma', 'vmacro21014' => 'vma', 'VMungo0331G0237' => 'vmu', 'VMungo0331G0706' => 'vmu', 'VMungo0331G1361' => 'vmu', 'VMungo0331G1489' => 'vmu', 'VMungo0540G1037' => 'vmu', 'VMungo0720G2487' => 'vmu', 'VMungo0720G2721' => 'vmu', 'Zm00001eb086860' => 'zma', 'Zm00001eb104760' => 'zma', 'Zm00001eb148220' => 'zma', 'Zm00001eb259030' => 'zma', 'Zm00001eb289590' => 'zma', 'Zm00001eb420150' => 'zma' ) $gf_id = 'HOM05D000968' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000968' ) $data_identifier = 'HOM05D000968' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 19, 'bol' => (int) 9, 'bra' => (int) 12, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 5, 'ccan' => (int) 7, 'cde' => (int) 5, 'cfa' => (int) 8, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 4, 'dca' => (int) 5, 'din' => (int) 5, 'dzi' => (int) 12, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 25, 'fve' => (int) 5, 'gma' => (int) 9, 'ghi' => (int) 18, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 7, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 5, 'sun' => (int) 2, 'lal' => (int) 9, 'lja' => (int) 5, 'lonja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 9, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 2, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 3, 'stu' => (int) 6, 'pvu' => (int) 4, 'ptr' => (int) 8, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 3, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 1, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 5, 'sas' => (int) 5, 'shi' => (int) 6, 'smo' => (int) 6, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 3, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420150' $species_info = array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ) $local_species = 'ppe' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000968', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p31690' => 'bna', 'A03p36040' => 'bna', 'A03p53730' => 'bna', 'A04p01410' => 'bna', 'A05p05420' => 'bna', 'A05p39630' => 'bna', 'A05p39640' => 'bna', 'A09p00970' => 'bna', 'A09p53060' => 'bna', 'A10p31890' => 'bna', 'Aa31LG10G15040' => 'aar', 'Aa31LG1G21090' => 'aar', 'Aa31LG1G26900' => 'aar', 'Aa31LG3G1820' => 'aar', 'Aa31LG5G1100' => 'aar', 'Aa31LG6G4740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2265' => 'aag', 'Actinidia07998' => 'ach', 'Actinidia11266' => 'ach', 'Actinidia12682' => 'ach', 'Actinidia26479' => 'ach', 'Actinidia31406' => 'ach', 'Actinidia32437' => 'ach', 'Actinidia38862' => 'ach', 'Ah.05g174230' => 'amhyb', 'Ah.05g179070' => 'amhyb', 'Ah.05g179090' => 'amhyb', 'Ah.12g059950' => 'amhyb', 'AL3G20480' => 'aly', 'AL4G44520' => 'aly', 'AL5G43110' => 'aly', 'AL6G13890' => 'aly', 'AL6G52620' => 'aly', 'AL7G30830' => 'aly', 'Aqoxy1G00899' => 'aox', 'Aqoxy5G04333' => 'aox', 'Aqoxy7G00641' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3IZ0NN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4EF6AW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W9P8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79GA3M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C43NQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFCU6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G95YVJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCHK29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LU1UG8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX91RN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGB4B1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8DA0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9H7JI' => 'arhy', 'AT3G09320' => 'ath', 'AT3G60800' => 'ath', 'AT4G00840' => 'ath', 'AT4G22750' => 'ath', 'AT5G04270' => 'ath', 'ATR0090G003' => 'atr', 'ATR0559G349' => 'atr', 'ATR0680G261' => 'atr', 'ATR0810G048' => 'atr', 'Atru.chr12.831' => 'acertr', 'Atru.chr5.303' => 'acertr', 'Atru.chr5.748' => 'acertr', 'Atru.chr8.1999' => 'acertr', 'Atru.chr9.1436' => 'acertr', 'AUR62004211' => 'cqu', 'AUR62004548' => 'cqu', 'AUR62013637' => 'cqu', 'AUR62022662' => 'cqu', 'AUR62025777' => 'cqu', 'AUR62042386' => 'cqu', 'BcaB01g02310' => 'bca', 'BcaB01g06062' => 'bca', 'BcaB02g08975' => 'bca', 'BcaB02g08980' => 'bca', 'BcaC01g04228' => 'bca', 'BcaC01g06830' => 'bca', 'BcaC02g10186' => 'bca', 'BcaC02g12214' => 'bca', 'BcaC04g24101' => 'bca', 'BcaC05g29520' => 'bca', 'BcaC05g29661' => 'bca', 'BcaC06g32130' => 'bca', 'BcaC06g32131' => 'bca', 'BcaC07g40601' => 'bca', 'BcaC07g42641' => 'bca', 'BcaNung01038' => 'bca', 'BcaNung01676' => 'bca', 'BcaNung02480' => 'bca', 'BcaNung07376' => 'bca', 'BolC3t16146H' => 'bol', 'BolC3t16637H' => 'bol', 'BolC4t22257H' => 'bol', 'BolC4t24728H' => 'bol', 'BolC5t34517H' => 'bol', 'BolC7t45703H' => 'bol', 'BolC8t51166H' => 'bol', 'BolC9t53038H' => 'bol', 'BolC9t60000H' => 'bol', 'BraA01t01345Z' => 'bra', 'BraA01t01346Z' => 'bra', 'BraA01t01348Z' => 'bra', 'BraA03t12347Z' => 'bra', 'BraA03t12775Z' => 'bra', 'BraA03t14439Z' => 'bra', 'BraA04t15860Z' => 'bra', 'BraA05t19511Z' => 'bra', 'BraA05t22746Z' => 'bra', 'BraA09t35767Z' => 'bra', 'BraA09t40732Z' => 'bra', 'BraA10t45233Z' => 'bra', 'C03p38720' => 'bna', 'C03p43680' => 'bna', 'C04p06350' => 'bna', 'C04p31800' => 'bna', 'C05p58680' => 'bna', 'C07p52110' => 'bna', 'C08p35760' => 'bna', 'C09p01050' => 'bna', 'C09p72600' => 'bna', 'CAN.G106.2' => 'can', 'CAN.G1482.1' => 'can', 'CAN.G324.12' => 'can', 'CAN.G388.20' => 'can', 'CAN.G412.7' => 'can', 'CAN.G694.32' => 'can', 'CAN.G92.12' => 'can', 'CANSAT11G2353' => 'cansat', 'CANSAT21G1398' => 'cansat', 'CANSAT56G2456' => 'cansat', 'CANSAT56G3031' => 'cansat', 'CANSAT56G4539' => 'cansat', 'CARHR083680' => 'chi', 'CARHR171190' => 'chi', 'CARHR209010' => 'chi', 'CARHR229680' => 'chi', 'CARHR249490' => 'chi', 'Carub.0003s0844' => 'cru', 'Carub.0005s2755' => 'cru', 'Carub.0006s0322' => 'cru', 'Carub.0006s3586' => 'cru', 'Carub.0007s1855' => 'cru', 'Ca_07808_v3' => 'car', 'Ca_09535_v3' => 'car', 'Ca_10548_v3' => 'car', 'Ca_19913_v3' => 'car', 'Ca_19916_v3' => 'car', 'Ca_19975_v3' => 'car', 'CBR_g22876' => 'cbr', 'CBR_g22879' => 'cbr', 'CBR_g38491' => 'cbr', 'CBR_g54185' => 'cbr', 'CBR_g54190' => 'cbr', 'Cc02_g11020' => 'ccan', 'Cc02_g23920' => 'ccan', 'Cc02_g39860' => 'ccan', 'Cc02_g39870' => 'ccan', 'Cc03_g06760' => 'ccan', 'Cc06_g02450' => 'ccan', 'Cc09_g09450' => 'ccan', 'CDE02G1959' => 'cde', 'CDE04G0600' => 'cde', 'CDE07G1996' => 'cde', 'CDE07G2078' => 'cde', 'CDE11G0611' => 'cde', 'Cfa001683' => 'cfa', 'Cfa001734' => 'cfa', 'Cfa001737' => 'cfa', 'Cfa003751' => 'cfa', 'Cfa012019' => 'cfa', 'Cfa017353' => 'cfa', 'Cfa017732' => 'cfa', 'Cfa022464' => 'cfa', 'Ciclev10012400m.g' => 'ccl', 'Ciclev10021242m.g' => 'ccl', 'Ciclev10021302m.g' => 'ccl', 'Ciclev10021463m.g' => 'ccl', 'Ciclev10032359m.g' => 'ccl', 'CiPaw.01G081000' => 'cil', 'CiPaw.01G262500' => 'cil', 'CiPaw.01G269800' => 'cil', 'CiPaw.02G168400' => 'cil', 'CiPaw.05G119500' => 'cil', 'CiPaw.11G147300' => 'cil', 'ClCG01G003630' => 'cla', 'ClCG05G000510' => 'cla', 'ClCG05G002300' => 'cla', 'ClCG08G007650' => 'cla', 'ClCG10G021250' => 'cla', 'COL.COLO4_06218' => 'col', 'COL.COLO4_12538' => 'col', 'COL.COLO4_14775' => 'col', 'COL.COLO4_23875' => 'col', 'Cpa.g.sc141.16' => 'cpa', 'Cpa.g.sc169.16' => 'cpa', 'Cpa.g.sc244.4' => 'cpa', 'Cpa.g.sc244.5' => 'cpa', 'Cpa.g.sc29.87' => 'cpa', 'Cpa.g.sc53.115' => 'cpa', 'Cre03.g207502' => 'cre', 'Cre06.g277000' => 'cre', 'Cre09.g394050' => 'cre', 'CsaV3_3G007680' => 'csa', 'CsaV3_3G009710' => 'csa', 'CsaV3_3G034790' => 'csa', 'CsaV3_5G003750' => 'csa', 'CsaV3_6G036620' => 'csa', 'CSS0002288' => 'camsi', 'CSS0011250' => 'camsi', 'CSS0021619' => 'camsi', 'CSS0046701' => 'camsi', 'DCAR_006420' => 'dca', 'DCAR_006865' => 'dca', 'DCAR_008558' => 'dca', 'DCAR_028754' => 'dca', 'DCAR_028755' => 'dca', 'Dinv31218' => 'din', 'Dinv32371' => 'din', 'Dinv34250' => 'din', 'Dinv37156' => 'din', 'Dinv43704' => 'din', 'Duzib093G1811' => 'dzi', 'Duzib106G1622' => 'dzi', 'Duzib114G0504' => 'dzi', 'Duzib128G0338' => 'dzi', 'Duzib128G1577' => 'dzi', 'Duzib133G0104' => 'dzi', 'Duzib133G1080' => 'dzi', 'Duzib138G0324' => 'dzi', 'Duzib138G0394' => 'dzi', 'Duzib205G0122' => 'dzi', 'Duzib268G1020' => 'dzi', 'Duzib268G1359' => 'dzi', 'ECA232G3929' => 'eca', 'ECA236G2210' => 'eca', 'ECA236G2287' => 'eca', 'ECA240G4568' => 'eca', 'ECA247G0894' => 'eca', 'EL10Ac1g00200' => 'bvu', 'EL10Ac1g00886' => 'bvu', 'EL10As1g23091' => 'bvu', 'EL10As1g23092' => 'bvu', 'Eucgr.A01284' => 'egr', 'Eucgr.A01285' => 'egr', 'Eucgr.D02456' => 'egr', 'Eucgr.E00018' => 'egr', 'Eucgr.E01439' => 'egr', 'Eucgr.G02859' => 'egr', 'FAN01G0168' => 'fan', 'FAN01G0453' => 'fan', 'FAN01G2761' => 'fan', 'FAN02G1239' => 'fan', 'FAN03G0645' => 'fan', 'FAN03G2707' => 'fan', 'FAN03G2978' => 'fan', 'FAN04G0227' => 'fan', 'FAN06G0091' => 'fan', 'FAN06G1418' => 'fan', 'FAN06G1512' => 'fan', 'FAN06G1986' => 'fan', 'FAN06G2905' => 'fan', 'FAN06G4325' => 'fan', 'FAN08G0033' => 'fan', 'FAN09G0642' => 'fan', 'FAN10G1763' => 'fan', 'FAN10G2026' => 'fan', 'FAN10G2513' => 'fan', 'FAN10G3402' => 'fan', 'FAN10G3564' => 'fan', 'FAN10G3987' => 'fan', 'FAN13G1490' => 'fan', 'FAN14G5857' => 'fan', 'FAN18G1188' => 'fan', 'FvH4_5g00750' => 'fve', 'FvH4_6g13410' => 'fve', 'FvH4_7g11740' => 'fve', 'FvH4_7g17410' => 'fve', 'FvH4_7g18860' => 'fve', 'Glyma.01G099100' => 'gma', 'Glyma.01G142300' => 'gma', 'Glyma.03G025500' => 'gma', 'Glyma.03G069700' => 'gma', 'Glyma.03G260000' => 'gma', 'Glyma.09G269800' => 'gma', 'Glyma.10G208700' => 'gma', 'Glyma.18G220400' => 'gma', 'Glyma.20G182000' => 'gma', 'Gohir.A01G221726' => 'ghi', 'Gohir.A07G134600' => 'ghi', 'Gohir.A07G146000' => 'ghi', 'Gohir.A08G173900' => 'ghi', 'Gohir.A09G194900' => 'ghi', 'Gohir.A10G204100' => 'ghi', 'Gohir.A11G080600' => 'ghi', 'Gohir.A11G327500' => 'ghi', 'Gohir.A12G101800' => 'ghi', 'Gohir.D01G211200' => 'ghi', 'Gohir.D07G139200' => 'ghi', 'Gohir.D07G152100' => 'ghi', 'Gohir.D08G192600' => 'ghi', 'Gohir.D09G189200' => 'ghi', 'Gohir.D10G212000' => 'ghi', 'Gohir.D11G085200' => 'ghi', 'Gohir.D11G346400' => 'ghi', 'Gohir.D12G104800' => 'ghi', 'Gorai.001G151300' => 'gra', 'Gorai.001G174100' => 'gra', 'Gorai.002G257000' => 'gra', 'Gorai.004G202600' => 'gra', 'Gorai.007G090900' => 'gra', 'Gorai.007G376700' => 'gra', 'Gorai.008G114100' => 'gra', 'Gorai.011G237900' => 'gra', 'GSVIVG01005450001' => 'vvi', 'GSVIVG01016232001' => 'vvi', 'GSVIVG01026157001' => 'vvi', 'GSVIVG01027419001' => 'vvi', 'GSVIVG01027631001' => 'vvi', 'GSVIVG01034143001' => 'vvi', 'HanXRQChr03g0093921' => 'han', 'HanXRQChr04g0120001' => 'han', 'HanXRQChr04g0122561' => 'han', 'HanXRQChr09g0246851' => 'han', 'HanXRQChr10g0293311' => 'han', 'HanXRQChr13g0425231' => 'han', 'HanXRQChr16g0532571' => 'han', 'Haze_09050' => 'cav', 'Haze_15715' => 'cav', 'Haze_15716' => 'cav', 'Haze_16803' => 'cav', 'Haze_16850' => 'cav', 'Hma1.2p1_0301F.1_g118655' => 'hma', 'Hma1.2p1_0309F.1_g120590' => 'hma', 'Hma1.2p1_0936F.1_g238900' => 'hma', 'Hma1.2p1_3552F.1_g336740' => 'hma', 'HPP92_003520' => 'vpl', 'HPP92_006628' => 'vpl', 'HPP92_006645' => 'vpl', 'HPP92_014669' => 'vpl', 'HPP92_015077' => 'vpl', 'Hund16742' => 'sun', 'Hund17022' => 'sun', 'Lalb_Chr02g0152131' => 'lal', 'Lalb_Chr05g0225371' => 'lal', 'Lalb_Chr07g0189841' => 'lal', 'Lalb_Chr07g0192961' => 'lal', 'Lalb_Chr12g0208221' => 'lal', 'Lalb_Chr13g0291211' => 'lal', 'Lalb_Chr13g0291781' => 'lal', 'Lalb_Chr18g0044651' => 'lal', 'Lalb_Chr21g0313731' => 'lal', 'Lj1g0022533' => 'lja', 'Lj2A18T50' => 'lonja', 'Lj2A92G93' => 'lonja', 'Lj3A965T73' => 'lonja', 'Lj3g0000673' => 'lja', 'Lj3g0002666' => 'lja', 'Lj4g0016985' => 'lja', 'Lj5g0003625' => 'lja', 'Lj7A529G36' => 'lonja', 'Lj9A569T49' => 'lonja', 'Lj9A604T63' => 'lonja', 'Lsat_1_v5_gn_3_132060' => 'lsa', 'Lsat_1_v5_gn_4_68941' => 'lsa', 'Lsat_1_v5_gn_5_95580' => 'lsa', 'Lsat_1_v5_gn_7_161' => 'lsa', 'Lsat_1_v5_gn_7_7041' => 'lsa', 'Lsat_1_v5_gn_9_33481' => 'lsa', 'Lsat_1_v5_gn_9_68260' => 'lsa', 'Manes.01G073100' => 'mes', 'Manes.01G266300' => 'mes', 'Manes.02G033300' => 'mes', 'Manes.05G017900' => 'mes', 'Manes.05G046100' => 'mes', 'Manes.08G080900' => 'mes', 'Manes.10G049400' => 'mes', 'Mapoly0009s0186' => 'mpo', 'Mapoly0036s0118' => 'mpo', 'Mapoly0101s0046' => 'mpo', 'MBI04_g30218_MAGBIO' => 'mbi', 'MBI04_g35564_MAGBIO' => 'mbi', 'MBI12_g34011_MAGBIO' => 'mbi', 'MBI14_g04655_MAGBIO' => 'mbi', 'MCO07G653' => 'mco', 'MCO10G173' => 'mco', 'MD01G1087100' => 'mdo', 'MD01G1104200' => 'mdo', 'MD02G1205100' => 'mdo', 'MD04G1079200' => 'mdo', 'MD04G1131400' => 'mdo', 'MD07G1121600' => 'mdo', 'MD07G1157300' => 'mdo', 'MD07G1171000' => 'mdo', 'MD12G1144500' => 'mdo', 'Medtr1g094610' => 'mtr', 'Medtr4g021795' => 'mtr', 'Medtr4g023760' => 'mtr', 'Medtr7g118050' => 'mtr', 'MELO3C005582.2' => 'cme', 'MELO3C005989.2' => 'cme', 'MELO3C006192.2' => 'cme', 'MELO3C009248.2' => 'cme', 'MELO3C019817.2' => 'cme', 'Migut.B01625' => 'egut', 'Migut.B01915' => 'egut', 'Migut.F01721' => 'egut', 'Migut.J00314' => 'egut', 'MSTRG.20742' => 'ama', 'MSTRG.8134' => 'ama', 'Nitab4.5_0000096g0010' => 'nta', 'Nitab4.5_0000202g0030' => 'nta', 'Nitab4.5_0000216g0370' => 'nta', 'Nitab4.5_0000457g0230' => 'nta', 'Nitab4.5_0001702g0170' => 'nta', 'Nitab4.5_0003607g0010' => 'nta', 'Nitab4.5_0004917g0020' => 'nta', 'Nitab4.5_0007059g0010' => 'nta', 'Nitab4.5_0007184g0010' => 'nta', 'Nitab4.5_0007346g0020' => 'nta', 'Nn1g00410' => 'nnu', 'Nn1g01252' => 'nnu', 'Nn2g11168' => 'nnu', 'Nn2g13403' => 'nnu', 'Nn2g13760' => 'nnu', 'Nn4g26380' => 'nnu', 'Oeu000806.2' => 'oeu', 'Oeu005788.1' => 'oeu', 'Oeu006900.3' => 'oeu', 'Oeu007797.1' => 'oeu', 'Oeu011932.1' => 'oeu', 'Oeu022739.1' => 'oeu', 'Oeu037918.1' => 'oeu', 'Oeu055490.2' => 'oeu', 'Os01g0844400' => 'osa', 'Os02g0819100' => 'osa', 'Os03g0804300' => 'osa', 'Os05g0458000' => 'osa', 'Os07g0467800' => 'osa', 'Os12g0602200' => 'osa', 'Peaxi162Scf00013g03444' => 'pax', 'Peaxi162Scf00094g01120' => 'pax', 'Peaxi162Scf00191g01211' => 'pax', 'Peaxi162Scf00238g01110' => 'pax', 'Peaxi162Scf00330g00719' => 'pax', 'Peaxi162Scf00627g00018' => 'pax', 'PGR031G2686' => 'pgr', 'PGR042G0809' => 'pgr', 'PGR142G0193' => 'pgr', 'PGSC0003DMG400011066' => 'stu', 'PGSC0003DMG400012041' => 'stu', 'PGSC0003DMG400013678' => 'stu', 'PGSC0003DMG400023477' => 'stu', 'PGSC0003DMG400025956' => 'stu', 'PGSC0003DMG401019151' => 'stu', 'Phvul.006G116400' => 'pvu', 'Phvul.007G097300' => 'pvu', 'Phvul.010G015000' => 'pvu', 'Phvul.010G083900' => 'pvu', 'Potri.001G117100' => 'ptr', 'Potri.002G147300' => 'ptr', 'Potri.003G115600' => 'ptr', 'Potri.006G087400' => 'ptr', 'Potri.010G226100' => 'ptr', 'Potri.014G069200' => 'ptr', 'Potri.014G104000' => 'ptr', 'Potri.016G100200' => 'ptr', 'Pp3c10_20450' => 'ppa', 'Pp3c1_42400' => 'ppa', 'Pp3c3_24390' => 'ppa', 'Pp3c3_2860' => 'ppa', 'PRCOL_00003193' => 'pco', 'Prupe.2G144500' => 'ppe', 'Prupe.2G195700' => 'ppe', 'Prupe.2G209800' => 'ppe', 'Prupe.5G080000' => 'ppe', 'Prupe.6G257900' => 'ppe', 'Psat3g001160' => 'psa', 'Psat6g181880' => 'psa', 'Psat7g233720' => 'psa', 'PSO063G7587' => 'pso', 'PSO339G2145' => 'pso', 'PSO339G3369' => 'pso', 'PSO478G2747' => 'pso', 'PSO513G0140' => 'pso', 'PSO782G1614' => 'pso', 'PSO782G4889' => 'pso', 'PSO782G5485' => 'pso', 'PSO801G0241' => 'pso', 'QL07p048854' => 'qlo', 'QL08p046745' => 'qlo', 'QL08p052606' => 'qlo', 'QL08p053414' => 'qlo', 'QL08p054868' => 'qlo', 'RcHm_v2.0_Chr1g0350251' => 'rch', 'RcHm_v2.0_Chr1g0360851' => 'rch', 'RcHm_v2.0_Chr1g0362791' => 'rch', 'RcHm_v2.0_Chr3g0466281' => 'rch', 'RcHm_v2.0_Chr7g0201481' => 'rch', 'Rhsim01G0148600' => 'rsi', 'Rhsim05G0194400' => 'rsi', 'Rhsim07G0000700' => 'rsi', 'Rhsim07G0000800' => 'rsi', 'Rhsim07G0027900' => 'rsi', 'Rhsim09G0149500' => 'rsi', 'RhsimUnG0186900' => 'rsi', 'Sabra01G0089900' => 'sbr', 'Sabra02G0114700' => 'sbr', 'Sabra02G0116300' => 'sbr', 'Sabra03G0080100' => 'sbr', 'Sabra08G0024300' => 'sbr', 'Sabra10G0174300' => 'sbr', 'Sabra14G0048900' => 'sbr', 'Sabra14G0076500' => 'sbr', 'SalBow5G2513' => 'sbo', 'Sc01g0002300' => 'sci', 'Sc01g0004450' => 'sci', 'Sc06g0001680' => 'sci', 'Sc23g0003580' => 'sci', 'Sed0000913' => 'sed', 'Sed0001655' => 'sed', 'Sed0007745' => 'sed', 'Sed0010951' => 'sed', 'Sed0017599' => 'sed', 'Sed0021405' => 'sed', 'Sed0022810' => 'sed', 'SEGI_07099' => 'sgi', 'SEGI_11931' => 'sgi', 'SEGI_13187' => 'sgi', 'SEGI_29958' => 'sgi', 'SEGI_36351' => 'sgi', 'SGA_v2.0_scaffold126G33770' => 'sas', 'SGA_v2.0_scaffold153G37003' => 'sas', 'SGA_v2.0_scaffold2G01359' => 'sas', 'SGA_v2.0_scaffold5G03064' => 'sas', 'SGA_v2.0_scaffold95G28903' => 'sas', 'SHI12701' => 'shi', 'SHI26410' => 'shi', 'SHI38997' => 'shi', 'SHI53759' => 'shi', 'SHI53886' => 'shi', 'SHI54714' => 'shi', 'SMO011G0041' => 'smo', 'SMO146G0251' => 'smo', 'SMO160G0004' => 'smo', 'SMO174G0057' => 'smo', 'SMO244G0089' => 'smo', 'SMO296G0011' => 'smo', 'Solyc01g091280.3' => 'sly', 'Solyc05g047610.3' => 'sly', 'Solyc05g047640.3' => 'sly', 'Solyc05g055630.3' => 'sly', 'Solyc10g018160.2' => 'sly', 'Solyc10g084820.2' => 'sly', 'Solyc10g086565.2' => 'sly', 'Sopen01g037030' => 'spe', 'Sopen05g027920' => 'spe', 'Sopen05g034070' => 'spe', 'Sopen10g007260' => 'spe', 'Sopen10g034260' => 'spe', 'Sopen10g035950' => 'spe', 'Sp3g07710' => 'spa', 'Sp4g27420' => 'spa', 'Sp5g02450' => 'spa', 'Sp6g01280' => 'spa', 'Sp6g38480' => 'spa', 'Sp7g20780' => 'spa', 'TAR374G1413' => 'tar', 'TAR623G1777' => 'tar', 'TAR629G2370' => 'tar', 'TAR633G1759' => 'tar', 'TAR636G3387' => 'tar', 'THA.LOC104802447' => 'tha', 'THA.LOC104813916' => 'tha', 'THA.LOC104816423' => 'tha', 'THA.LOC104817246' => 'tha', 'THA.LOC104825895' => 'tha', 'Thecc.01G335200' => 'tca', 'Thecc.01G377400' => 'tca', 'Thecc.03G262200' => 'tca', 'Thecc.05G036800' => 'tca', 'Thecc.10G080500' => 'tca', 'Thecc.10G080800' => 'tca', 'Thhalv10001560m.g' => 'esa', 'Thhalv10006120m.g' => 'esa', 'Thhalv10014375m.g' => 'esa', 'Thhalv10021264m.g' => 'esa', 'Thhalv10028856m.g' => 'esa', 'TPR.G1914' => 'tpr', 'TPR.G4757' => 'tpr', 'TPR.G5595' => 'tpr', 'TWI14G0952' => 'twi', 'TWI14G1307' => 'twi', 'TWI38G2143' => 'twi', 'TWI59G0826' => 'twi', 'TWI77G0527' => 'twi', 'TWI81G0150' => 'twi', 'unitig_21.g21018' => 'ugi', 'unitig_26.g9725' => 'ugi', 'unitig_744.g24653' => 'ugi', 'unitig_749.g13778' => 'ugi', 'unitig_899.g15035' => 'ugi', 'vmacro04296' => 'vma', 'vmacro04852' => 'vma', 'vmacro13404' => 'vma', 'vmacro20169' => 'vma', 'vmacro21014' => 'vma', 'VMungo0331G0237' => 'vmu', 'VMungo0331G0706' => 'vmu', 'VMungo0331G1361' => 'vmu', 'VMungo0331G1489' => 'vmu', 'VMungo0540G1037' => 'vmu', 'VMungo0720G2487' => 'vmu', 'VMungo0720G2721' => 'vmu', 'Zm00001eb086860' => 'zma', 'Zm00001eb104760' => 'zma', 'Zm00001eb148220' => 'zma', 'Zm00001eb259030' => 'zma', 'Zm00001eb289590' => 'zma', 'Zm00001eb420150' => 'zma' ), 'gf_id' => 'HOM05D000968', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000968' ), 'data_identifier' => 'HOM05D000968', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000968', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p31690' => 'bna', 'A03p36040' => 'bna', 'A03p53730' => 'bna', 'A04p01410' => 'bna', 'A05p05420' => 'bna', 'A05p39630' => 'bna', 'A05p39640' => 'bna', 'A09p00970' => 'bna', 'A09p53060' => 'bna', 'A10p31890' => 'bna', 'Aa31LG10G15040' => 'aar', 'Aa31LG1G21090' => 'aar', 'Aa31LG1G26900' => 'aar', 'Aa31LG3G1820' => 'aar', 'Aa31LG5G1100' => 'aar', 'Aa31LG6G4740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2265' => 'aag', 'Actinidia07998' => 'ach', 'Actinidia11266' => 'ach', 'Actinidia12682' => 'ach', 'Actinidia26479' => 'ach', 'Actinidia31406' => 'ach', 'Actinidia32437' => 'ach', 'Actinidia38862' => 'ach', 'Ah.05g174230' => 'amhyb', 'Ah.05g179070' => 'amhyb', 'Ah.05g179090' => 'amhyb', 'Ah.12g059950' => 'amhyb', 'AL3G20480' => 'aly', 'AL4G44520' => 'aly', 'AL5G43110' => 'aly', 'AL6G13890' => 'aly', 'AL6G52620' => 'aly', 'AL7G30830' => 'aly', 'Aqoxy1G00899' => 'aox', 'Aqoxy5G04333' => 'aox', 'Aqoxy7G00641' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3IZ0NN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4EF6AW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W9P8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79GA3M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C43NQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFCU6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G95YVJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCHK29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LU1UG8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX91RN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGB4B1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8DA0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9H7JI' => 'arhy', 'AT3G09320' => 'ath', 'AT3G60800' => 'ath', 'AT4G00840' => 'ath', 'AT4G22750' => 'ath', 'AT5G04270' => 'ath', 'ATR0090G003' => 'atr', 'ATR0559G349' => 'atr', 'ATR0680G261' => 'atr', 'ATR0810G048' => 'atr', 'Atru.chr12.831' => 'acertr', 'Atru.chr5.303' => 'acertr', 'Atru.chr5.748' => 'acertr', 'Atru.chr8.1999' => 'acertr', 'Atru.chr9.1436' => 'acertr', 'AUR62004211' => 'cqu', 'AUR62004548' => 'cqu', 'AUR62013637' => 'cqu', 'AUR62022662' => 'cqu', 'AUR62025777' => 'cqu', 'AUR62042386' => 'cqu', 'BcaB01g02310' => 'bca', 'BcaB01g06062' => 'bca', 'BcaB02g08975' => 'bca', 'BcaB02g08980' => 'bca', 'BcaC01g04228' => 'bca', 'BcaC01g06830' => 'bca', 'BcaC02g10186' => 'bca', 'BcaC02g12214' => 'bca', 'BcaC04g24101' => 'bca', 'BcaC05g29520' => 'bca', 'BcaC05g29661' => 'bca', 'BcaC06g32130' => 'bca', 'BcaC06g32131' => 'bca', 'BcaC07g40601' => 'bca', 'BcaC07g42641' => 'bca', 'BcaNung01038' => 'bca', 'BcaNung01676' => 'bca', 'BcaNung02480' => 'bca', 'BcaNung07376' => 'bca', 'BolC3t16146H' => 'bol', 'BolC3t16637H' => 'bol', 'BolC4t22257H' => 'bol', 'BolC4t24728H' => 'bol', 'BolC5t34517H' => 'bol', 'BolC7t45703H' => 'bol', 'BolC8t51166H' => 'bol', 'BolC9t53038H' => 'bol', 'BolC9t60000H' => 'bol', 'BraA01t01345Z' => 'bra', 'BraA01t01346Z' => 'bra', 'BraA01t01348Z' => 'bra', 'BraA03t12347Z' => 'bra', 'BraA03t12775Z' => 'bra', 'BraA03t14439Z' => 'bra', 'BraA04t15860Z' => 'bra', 'BraA05t19511Z' => 'bra', 'BraA05t22746Z' => 'bra', 'BraA09t35767Z' => 'bra', 'BraA09t40732Z' => 'bra', 'BraA10t45233Z' => 'bra', 'C03p38720' => 'bna', 'C03p43680' => 'bna', 'C04p06350' => 'bna', 'C04p31800' => 'bna', 'C05p58680' => 'bna', 'C07p52110' => 'bna', 'C08p35760' => 'bna', 'C09p01050' => 'bna', 'C09p72600' => 'bna', 'CAN.G106.2' => 'can', 'CAN.G1482.1' => 'can', 'CAN.G324.12' => 'can', 'CAN.G388.20' => 'can', 'CAN.G412.7' => 'can', 'CAN.G694.32' => 'can', 'CAN.G92.12' => 'can', 'CANSAT11G2353' => 'cansat', 'CANSAT21G1398' => 'cansat', 'CANSAT56G2456' => 'cansat', 'CANSAT56G3031' => 'cansat', 'CANSAT56G4539' => 'cansat', 'CARHR083680' => 'chi', 'CARHR171190' => 'chi', 'CARHR209010' => 'chi', 'CARHR229680' => 'chi', 'CARHR249490' => 'chi', 'Carub.0003s0844' => 'cru', 'Carub.0005s2755' => 'cru', 'Carub.0006s0322' => 'cru', 'Carub.0006s3586' => 'cru', 'Carub.0007s1855' => 'cru', 'Ca_07808_v3' => 'car', 'Ca_09535_v3' => 'car', 'Ca_10548_v3' => 'car', 'Ca_19913_v3' => 'car', 'Ca_19916_v3' => 'car', 'Ca_19975_v3' => 'car', 'CBR_g22876' => 'cbr', 'CBR_g22879' => 'cbr', 'CBR_g38491' => 'cbr', 'CBR_g54185' => 'cbr', 'CBR_g54190' => 'cbr', 'Cc02_g11020' => 'ccan', 'Cc02_g23920' => 'ccan', 'Cc02_g39860' => 'ccan', 'Cc02_g39870' => 'ccan', 'Cc03_g06760' => 'ccan', 'Cc06_g02450' => 'ccan', 'Cc09_g09450' => 'ccan', 'CDE02G1959' => 'cde', 'CDE04G0600' => 'cde', 'CDE07G1996' => 'cde', 'CDE07G2078' => 'cde', 'CDE11G0611' => 'cde', 'Cfa001683' => 'cfa', 'Cfa001734' => 'cfa', 'Cfa001737' => 'cfa', 'Cfa003751' => 'cfa', 'Cfa012019' => 'cfa', 'Cfa017353' => 'cfa', 'Cfa017732' => 'cfa', 'Cfa022464' => 'cfa', 'Ciclev10012400m.g' => 'ccl', 'Ciclev10021242m.g' => 'ccl', 'Ciclev10021302m.g' => 'ccl', 'Ciclev10021463m.g' => 'ccl', 'Ciclev10032359m.g' => 'ccl', 'CiPaw.01G081000' => 'cil', 'CiPaw.01G262500' => 'cil', 'CiPaw.01G269800' => 'cil', 'CiPaw.02G168400' => 'cil', 'CiPaw.05G119500' => 'cil', 'CiPaw.11G147300' => 'cil', 'ClCG01G003630' => 'cla', 'ClCG05G000510' => 'cla', 'ClCG05G002300' => 'cla', 'ClCG08G007650' => 'cla', 'ClCG10G021250' => 'cla', 'COL.COLO4_06218' => 'col', 'COL.COLO4_12538' => 'col', 'COL.COLO4_14775' => 'col', 'COL.COLO4_23875' => 'col', 'Cpa.g.sc141.16' => 'cpa', 'Cpa.g.sc169.16' => 'cpa', 'Cpa.g.sc244.4' => 'cpa', 'Cpa.g.sc244.5' => 'cpa', 'Cpa.g.sc29.87' => 'cpa', 'Cpa.g.sc53.115' => 'cpa', 'Cre03.g207502' => 'cre', 'Cre06.g277000' => 'cre', 'Cre09.g394050' => 'cre', 'CsaV3_3G007680' => 'csa', 'CsaV3_3G009710' => 'csa', 'CsaV3_3G034790' => 'csa', 'CsaV3_5G003750' => 'csa', 'CsaV3_6G036620' => 'csa', 'CSS0002288' => 'camsi', 'CSS0011250' => 'camsi', 'CSS0021619' => 'camsi', 'CSS0046701' => 'camsi', 'DCAR_006420' => 'dca', 'DCAR_006865' => 'dca', 'DCAR_008558' => 'dca', 'DCAR_028754' => 'dca', 'DCAR_028755' => 'dca', 'Dinv31218' => 'din', 'Dinv32371' => 'din', 'Dinv34250' => 'din', 'Dinv37156' => 'din', 'Dinv43704' => 'din', 'Duzib093G1811' => 'dzi', 'Duzib106G1622' => 'dzi', 'Duzib114G0504' => 'dzi', 'Duzib128G0338' => 'dzi', 'Duzib128G1577' => 'dzi', 'Duzib133G0104' => 'dzi', 'Duzib133G1080' => 'dzi', 'Duzib138G0324' => 'dzi', 'Duzib138G0394' => 'dzi', 'Duzib205G0122' => 'dzi', 'Duzib268G1020' => 'dzi', 'Duzib268G1359' => 'dzi', 'ECA232G3929' => 'eca', 'ECA236G2210' => 'eca', 'ECA236G2287' => 'eca', 'ECA240G4568' => 'eca', 'ECA247G0894' => 'eca', 'EL10Ac1g00200' => 'bvu', 'EL10Ac1g00886' => 'bvu', 'EL10As1g23091' => 'bvu', 'EL10As1g23092' => 'bvu', 'Eucgr.A01284' => 'egr', 'Eucgr.A01285' => 'egr', 'Eucgr.D02456' => 'egr', 'Eucgr.E00018' => 'egr', 'Eucgr.E01439' => 'egr', 'Eucgr.G02859' => 'egr', 'FAN01G0168' => 'fan', 'FAN01G0453' => 'fan', 'FAN01G2761' => 'fan', 'FAN02G1239' => 'fan', 'FAN03G0645' => 'fan', 'FAN03G2707' => 'fan', 'FAN03G2978' => 'fan', 'FAN04G0227' => 'fan', 'FAN06G0091' => 'fan', 'FAN06G1418' => 'fan', 'FAN06G1512' => 'fan', 'FAN06G1986' => 'fan', 'FAN06G2905' => 'fan', 'FAN06G4325' => 'fan', 'FAN08G0033' => 'fan', 'FAN09G0642' => 'fan', 'FAN10G1763' => 'fan', 'FAN10G2026' => 'fan', 'FAN10G2513' => 'fan', 'FAN10G3402' => 'fan', 'FAN10G3564' => 'fan', 'FAN10G3987' => 'fan', 'FAN13G1490' => 'fan', 'FAN14G5857' => 'fan', 'FAN18G1188' => 'fan', 'FvH4_5g00750' => 'fve', 'FvH4_6g13410' => 'fve', 'FvH4_7g11740' => 'fve', 'FvH4_7g17410' => 'fve', 'FvH4_7g18860' => 'fve', 'Glyma.01G099100' => 'gma', 'Glyma.01G142300' => 'gma', 'Glyma.03G025500' => 'gma', 'Glyma.03G069700' => 'gma', 'Glyma.03G260000' => 'gma', 'Glyma.09G269800' => 'gma', 'Glyma.10G208700' => 'gma', 'Glyma.18G220400' => 'gma', 'Glyma.20G182000' => 'gma', 'Gohir.A01G221726' => 'ghi', 'Gohir.A07G134600' => 'ghi', 'Gohir.A07G146000' => 'ghi', 'Gohir.A08G173900' => 'ghi', 'Gohir.A09G194900' => 'ghi', 'Gohir.A10G204100' => 'ghi', 'Gohir.A11G080600' => 'ghi', 'Gohir.A11G327500' => 'ghi', 'Gohir.A12G101800' => 'ghi', 'Gohir.D01G211200' => 'ghi', 'Gohir.D07G139200' => 'ghi', 'Gohir.D07G152100' => 'ghi', 'Gohir.D08G192600' => 'ghi', 'Gohir.D09G189200' => 'ghi', 'Gohir.D10G212000' => 'ghi', 'Gohir.D11G085200' => 'ghi', 'Gohir.D11G346400' => 'ghi', 'Gohir.D12G104800' => 'ghi', 'Gorai.001G151300' => 'gra', 'Gorai.001G174100' => 'gra', 'Gorai.002G257000' => 'gra', 'Gorai.004G202600' => 'gra', 'Gorai.007G090900' => 'gra', 'Gorai.007G376700' => 'gra', 'Gorai.008G114100' => 'gra', 'Gorai.011G237900' => 'gra', 'GSVIVG01005450001' => 'vvi', 'GSVIVG01016232001' => 'vvi', 'GSVIVG01026157001' => 'vvi', 'GSVIVG01027419001' => 'vvi', 'GSVIVG01027631001' => 'vvi', 'GSVIVG01034143001' => 'vvi', 'HanXRQChr03g0093921' => 'han', 'HanXRQChr04g0120001' => 'han', 'HanXRQChr04g0122561' => 'han', 'HanXRQChr09g0246851' => 'han', 'HanXRQChr10g0293311' => 'han', 'HanXRQChr13g0425231' => 'han', 'HanXRQChr16g0532571' => 'han', 'Haze_09050' => 'cav', 'Haze_15715' => 'cav', 'Haze_15716' => 'cav', 'Haze_16803' => 'cav', 'Haze_16850' => 'cav', 'Hma1.2p1_0301F.1_g118655' => 'hma', 'Hma1.2p1_0309F.1_g120590' => 'hma', 'Hma1.2p1_0936F.1_g238900' => 'hma', 'Hma1.2p1_3552F.1_g336740' => 'hma', 'HPP92_003520' => 'vpl', 'HPP92_006628' => 'vpl', 'HPP92_006645' => 'vpl', 'HPP92_014669' => 'vpl', 'HPP92_015077' => 'vpl', 'Hund16742' => 'sun', 'Hund17022' => 'sun', 'Lalb_Chr02g0152131' => 'lal', 'Lalb_Chr05g0225371' => 'lal', 'Lalb_Chr07g0189841' => 'lal', 'Lalb_Chr07g0192961' => 'lal', 'Lalb_Chr12g0208221' => 'lal', 'Lalb_Chr13g0291211' => 'lal', 'Lalb_Chr13g0291781' => 'lal', 'Lalb_Chr18g0044651' => 'lal', 'Lalb_Chr21g0313731' => 'lal', 'Lj1g0022533' => 'lja', 'Lj2A18T50' => 'lonja', 'Lj2A92G93' => 'lonja', 'Lj3A965T73' => 'lonja', 'Lj3g0000673' => 'lja', 'Lj3g0002666' => 'lja', 'Lj4g0016985' => 'lja', 'Lj5g0003625' => 'lja', 'Lj7A529G36' => 'lonja', 'Lj9A569T49' => 'lonja', 'Lj9A604T63' => 'lonja', 'Lsat_1_v5_gn_3_132060' => 'lsa', 'Lsat_1_v5_gn_4_68941' => 'lsa', 'Lsat_1_v5_gn_5_95580' => 'lsa', 'Lsat_1_v5_gn_7_161' => 'lsa', 'Lsat_1_v5_gn_7_7041' => 'lsa', 'Lsat_1_v5_gn_9_33481' => 'lsa', 'Lsat_1_v5_gn_9_68260' => 'lsa', 'Manes.01G073100' => 'mes', 'Manes.01G266300' => 'mes', 'Manes.02G033300' => 'mes', 'Manes.05G017900' => 'mes', 'Manes.05G046100' => 'mes', 'Manes.08G080900' => 'mes', 'Manes.10G049400' => 'mes', 'Mapoly0009s0186' => 'mpo', 'Mapoly0036s0118' => 'mpo', 'Mapoly0101s0046' => 'mpo', 'MBI04_g30218_MAGBIO' => 'mbi', 'MBI04_g35564_MAGBIO' => 'mbi', 'MBI12_g34011_MAGBIO' => 'mbi', 'MBI14_g04655_MAGBIO' => 'mbi', 'MCO07G653' => 'mco', 'MCO10G173' => 'mco', 'MD01G1087100' => 'mdo', 'MD01G1104200' => 'mdo', 'MD02G1205100' => 'mdo', 'MD04G1079200' => 'mdo', 'MD04G1131400' => 'mdo', 'MD07G1121600' => 'mdo', 'MD07G1157300' => 'mdo', 'MD07G1171000' => 'mdo', 'MD12G1144500' => 'mdo', 'Medtr1g094610' => 'mtr', 'Medtr4g021795' => 'mtr', 'Medtr4g023760' => 'mtr', 'Medtr7g118050' => 'mtr', 'MELO3C005582.2' => 'cme', 'MELO3C005989.2' => 'cme', 'MELO3C006192.2' => 'cme', 'MELO3C009248.2' => 'cme', 'MELO3C019817.2' => 'cme', 'Migut.B01625' => 'egut', 'Migut.B01915' => 'egut', 'Migut.F01721' => 'egut', 'Migut.J00314' => 'egut', 'MSTRG.20742' => 'ama', 'MSTRG.8134' => 'ama', 'Nitab4.5_0000096g0010' => 'nta', 'Nitab4.5_0000202g0030' => 'nta', 'Nitab4.5_0000216g0370' => 'nta', 'Nitab4.5_0000457g0230' => 'nta', 'Nitab4.5_0001702g0170' => 'nta', 'Nitab4.5_0003607g0010' => 'nta', 'Nitab4.5_0004917g0020' => 'nta', 'Nitab4.5_0007059g0010' => 'nta', 'Nitab4.5_0007184g0010' => 'nta', 'Nitab4.5_0007346g0020' => 'nta', 'Nn1g00410' => 'nnu', 'Nn1g01252' => 'nnu', 'Nn2g11168' => 'nnu', 'Nn2g13403' => 'nnu', 'Nn2g13760' => 'nnu', 'Nn4g26380' => 'nnu', 'Oeu000806.2' => 'oeu', 'Oeu005788.1' => 'oeu', 'Oeu006900.3' => 'oeu', 'Oeu007797.1' => 'oeu', 'Oeu011932.1' => 'oeu', 'Oeu022739.1' => 'oeu', 'Oeu037918.1' => 'oeu', 'Oeu055490.2' => 'oeu', 'Os01g0844400' => 'osa', 'Os02g0819100' => 'osa', 'Os03g0804300' => 'osa', 'Os05g0458000' => 'osa', 'Os07g0467800' => 'osa', 'Os12g0602200' => 'osa', 'Peaxi162Scf00013g03444' => 'pax', 'Peaxi162Scf00094g01120' => 'pax', 'Peaxi162Scf00191g01211' => 'pax', 'Peaxi162Scf00238g01110' => 'pax', 'Peaxi162Scf00330g00719' => 'pax', 'Peaxi162Scf00627g00018' => 'pax', 'PGR031G2686' => 'pgr', 'PGR042G0809' => 'pgr', 'PGR142G0193' => 'pgr', 'PGSC0003DMG400011066' => 'stu', 'PGSC0003DMG400012041' => 'stu', 'PGSC0003DMG400013678' => 'stu', 'PGSC0003DMG400023477' => 'stu', 'PGSC0003DMG400025956' => 'stu', 'PGSC0003DMG401019151' => 'stu', 'Phvul.006G116400' => 'pvu', 'Phvul.007G097300' => 'pvu', 'Phvul.010G015000' => 'pvu', 'Phvul.010G083900' => 'pvu', 'Potri.001G117100' => 'ptr', 'Potri.002G147300' => 'ptr', 'Potri.003G115600' => 'ptr', 'Potri.006G087400' => 'ptr', 'Potri.010G226100' => 'ptr', 'Potri.014G069200' => 'ptr', 'Potri.014G104000' => 'ptr', 'Potri.016G100200' => 'ptr', 'Pp3c10_20450' => 'ppa', 'Pp3c1_42400' => 'ppa', 'Pp3c3_24390' => 'ppa', 'Pp3c3_2860' => 'ppa', 'PRCOL_00003193' => 'pco', 'Prupe.2G144500' => 'ppe', 'Prupe.2G195700' => 'ppe', 'Prupe.2G209800' => 'ppe', 'Prupe.5G080000' => 'ppe', 'Prupe.6G257900' => 'ppe', 'Psat3g001160' => 'psa', 'Psat6g181880' => 'psa', 'Psat7g233720' => 'psa', 'PSO063G7587' => 'pso', 'PSO339G2145' => 'pso', 'PSO339G3369' => 'pso', 'PSO478G2747' => 'pso', 'PSO513G0140' => 'pso', 'PSO782G1614' => 'pso', 'PSO782G4889' => 'pso', 'PSO782G5485' => 'pso', 'PSO801G0241' => 'pso', 'QL07p048854' => 'qlo', 'QL08p046745' => 'qlo', 'QL08p052606' => 'qlo', 'QL08p053414' => 'qlo', 'QL08p054868' => 'qlo', 'RcHm_v2.0_Chr1g0350251' => 'rch', 'RcHm_v2.0_Chr1g0360851' => 'rch', 'RcHm_v2.0_Chr1g0362791' => 'rch', 'RcHm_v2.0_Chr3g0466281' => 'rch', 'RcHm_v2.0_Chr7g0201481' => 'rch', 'Rhsim01G0148600' => 'rsi', 'Rhsim05G0194400' => 'rsi', 'Rhsim07G0000700' => 'rsi', 'Rhsim07G0000800' => 'rsi', 'Rhsim07G0027900' => 'rsi', 'Rhsim09G0149500' => 'rsi', 'RhsimUnG0186900' => 'rsi', 'Sabra01G0089900' => 'sbr', 'Sabra02G0114700' => 'sbr', 'Sabra02G0116300' => 'sbr', 'Sabra03G0080100' => 'sbr', 'Sabra08G0024300' => 'sbr', 'Sabra10G0174300' => 'sbr', 'Sabra14G0048900' => 'sbr', 'Sabra14G0076500' => 'sbr', 'SalBow5G2513' => 'sbo', 'Sc01g0002300' => 'sci', 'Sc01g0004450' => 'sci', 'Sc06g0001680' => 'sci', 'Sc23g0003580' => 'sci', 'Sed0000913' => 'sed', 'Sed0001655' => 'sed', 'Sed0007745' => 'sed', 'Sed0010951' => 'sed', 'Sed0017599' => 'sed', 'Sed0021405' => 'sed', 'Sed0022810' => 'sed', 'SEGI_07099' => 'sgi', 'SEGI_11931' => 'sgi', 'SEGI_13187' => 'sgi', 'SEGI_29958' => 'sgi', 'SEGI_36351' => 'sgi', 'SGA_v2.0_scaffold126G33770' => 'sas', 'SGA_v2.0_scaffold153G37003' => 'sas', 'SGA_v2.0_scaffold2G01359' => 'sas', 'SGA_v2.0_scaffold5G03064' => 'sas', 'SGA_v2.0_scaffold95G28903' => 'sas', 'SHI12701' => 'shi', 'SHI26410' => 'shi', 'SHI38997' => 'shi', 'SHI53759' => 'shi', 'SHI53886' => 'shi', 'SHI54714' => 'shi', 'SMO011G0041' => 'smo', 'SMO146G0251' => 'smo', 'SMO160G0004' => 'smo', 'SMO174G0057' => 'smo', 'SMO244G0089' => 'smo', 'SMO296G0011' => 'smo', 'Solyc01g091280.3' => 'sly', 'Solyc05g047610.3' => 'sly', 'Solyc05g047640.3' => 'sly', 'Solyc05g055630.3' => 'sly', 'Solyc10g018160.2' => 'sly', 'Solyc10g084820.2' => 'sly', 'Solyc10g086565.2' => 'sly', 'Sopen01g037030' => 'spe', 'Sopen05g027920' => 'spe', 'Sopen05g034070' => 'spe', 'Sopen10g007260' => 'spe', 'Sopen10g034260' => 'spe', 'Sopen10g035950' => 'spe', 'Sp3g07710' => 'spa', 'Sp4g27420' => 'spa', 'Sp5g02450' => 'spa', 'Sp6g01280' => 'spa', 'Sp6g38480' => 'spa', 'Sp7g20780' => 'spa', 'TAR374G1413' => 'tar', 'TAR623G1777' => 'tar', 'TAR629G2370' => 'tar', 'TAR633G1759' => 'tar', 'TAR636G3387' => 'tar', 'THA.LOC104802447' => 'tha', 'THA.LOC104813916' => 'tha', 'THA.LOC104816423' => 'tha', 'THA.LOC104817246' => 'tha', 'THA.LOC104825895' => 'tha', 'Thecc.01G335200' => 'tca', 'Thecc.01G377400' => 'tca', 'Thecc.03G262200' => 'tca', 'Thecc.05G036800' => 'tca', 'Thecc.10G080500' => 'tca', 'Thecc.10G080800' => 'tca', 'Thhalv10001560m.g' => 'esa', 'Thhalv10006120m.g' => 'esa', 'Thhalv10014375m.g' => 'esa', 'Thhalv10021264m.g' => 'esa', 'Thhalv10028856m.g' => 'esa', 'TPR.G1914' => 'tpr', 'TPR.G4757' => 'tpr', 'TPR.G5595' => 'tpr', 'TWI14G0952' => 'twi', 'TWI14G1307' => 'twi', 'TWI38G2143' => 'twi', 'TWI59G0826' => 'twi', 'TWI77G0527' => 'twi', 'TWI81G0150' => 'twi', 'unitig_21.g21018' => 'ugi', 'unitig_26.g9725' => 'ugi', 'unitig_744.g24653' => 'ugi', 'unitig_749.g13778' => 'ugi', 'unitig_899.g15035' => 'ugi', 'vmacro04296' => 'vma', 'vmacro04852' => 'vma', 'vmacro13404' => 'vma', 'vmacro20169' => 'vma', 'vmacro21014' => 'vma', 'VMungo0331G0237' => 'vmu', 'VMungo0331G0706' => 'vmu', 'VMungo0331G1361' => 'vmu', 'VMungo0331G1489' => 'vmu', 'VMungo0540G1037' => 'vmu', 'VMungo0720G2487' => 'vmu', 'VMungo0720G2721' => 'vmu', 'Zm00001eb086860' => 'zma', 'Zm00001eb104760' => 'zma', 'Zm00001eb148220' => 'zma', 'Zm00001eb259030' => 'zma', 'Zm00001eb289590' => 'zma', 'Zm00001eb420150' => 'zma' ) $gf_id = 'HOM05D000968' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000968' ) $data_identifier = 'HOM05D000968' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 19, 'bol' => (int) 9, 'bra' => (int) 12, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 5, 'ccan' => (int) 7, 'cde' => (int) 5, 'cfa' => (int) 8, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 4, 'dca' => (int) 5, 'din' => (int) 5, 'dzi' => (int) 12, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 25, 'fve' => (int) 5, 'gma' => (int) 9, 'ghi' => (int) 18, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 7, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 5, 'sun' => (int) 2, 'lal' => (int) 9, 'lja' => (int) 5, 'lonja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 9, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 2, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 3, 'stu' => (int) 6, 'pvu' => (int) 4, 'ptr' => (int) 8, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 3, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 1, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 5, 'sas' => (int) 5, 'shi' => (int) 6, 'smo' => (int) 6, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 3, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420150' $species_info = array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ) $local_species = 'ppe' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000968', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p31690' => 'bna', 'A03p36040' => 'bna', 'A03p53730' => 'bna', 'A04p01410' => 'bna', 'A05p05420' => 'bna', 'A05p39630' => 'bna', 'A05p39640' => 'bna', 'A09p00970' => 'bna', 'A09p53060' => 'bna', 'A10p31890' => 'bna', 'Aa31LG10G15040' => 'aar', 'Aa31LG1G21090' => 'aar', 'Aa31LG1G26900' => 'aar', 'Aa31LG3G1820' => 'aar', 'Aa31LG5G1100' => 'aar', 'Aa31LG6G4740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2265' => 'aag', 'Actinidia07998' => 'ach', 'Actinidia11266' => 'ach', 'Actinidia12682' => 'ach', 'Actinidia26479' => 'ach', 'Actinidia31406' => 'ach', 'Actinidia32437' => 'ach', 'Actinidia38862' => 'ach', 'Ah.05g174230' => 'amhyb', 'Ah.05g179070' => 'amhyb', 'Ah.05g179090' => 'amhyb', 'Ah.12g059950' => 'amhyb', 'AL3G20480' => 'aly', 'AL4G44520' => 'aly', 'AL5G43110' => 'aly', 'AL6G13890' => 'aly', 'AL6G52620' => 'aly', 'AL7G30830' => 'aly', 'Aqoxy1G00899' => 'aox', 'Aqoxy5G04333' => 'aox', 'Aqoxy7G00641' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3IZ0NN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4EF6AW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W9P8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79GA3M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C43NQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFCU6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G95YVJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCHK29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LU1UG8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX91RN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGB4B1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8DA0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9H7JI' => 'arhy', 'AT3G09320' => 'ath', 'AT3G60800' => 'ath', 'AT4G00840' => 'ath', 'AT4G22750' => 'ath', 'AT5G04270' => 'ath', 'ATR0090G003' => 'atr', 'ATR0559G349' => 'atr', 'ATR0680G261' => 'atr', 'ATR0810G048' => 'atr', 'Atru.chr12.831' => 'acertr', 'Atru.chr5.303' => 'acertr', 'Atru.chr5.748' => 'acertr', 'Atru.chr8.1999' => 'acertr', 'Atru.chr9.1436' => 'acertr', 'AUR62004211' => 'cqu', 'AUR62004548' => 'cqu', 'AUR62013637' => 'cqu', 'AUR62022662' => 'cqu', 'AUR62025777' => 'cqu', 'AUR62042386' => 'cqu', 'BcaB01g02310' => 'bca', 'BcaB01g06062' => 'bca', 'BcaB02g08975' => 'bca', 'BcaB02g08980' => 'bca', 'BcaC01g04228' => 'bca', 'BcaC01g06830' => 'bca', 'BcaC02g10186' => 'bca', 'BcaC02g12214' => 'bca', 'BcaC04g24101' => 'bca', 'BcaC05g29520' => 'bca', 'BcaC05g29661' => 'bca', 'BcaC06g32130' => 'bca', 'BcaC06g32131' => 'bca', 'BcaC07g40601' => 'bca', 'BcaC07g42641' => 'bca', 'BcaNung01038' => 'bca', 'BcaNung01676' => 'bca', 'BcaNung02480' => 'bca', 'BcaNung07376' => 'bca', 'BolC3t16146H' => 'bol', 'BolC3t16637H' => 'bol', 'BolC4t22257H' => 'bol', 'BolC4t24728H' => 'bol', 'BolC5t34517H' => 'bol', 'BolC7t45703H' => 'bol', 'BolC8t51166H' => 'bol', 'BolC9t53038H' => 'bol', 'BolC9t60000H' => 'bol', 'BraA01t01345Z' => 'bra', 'BraA01t01346Z' => 'bra', 'BraA01t01348Z' => 'bra', 'BraA03t12347Z' => 'bra', 'BraA03t12775Z' => 'bra', 'BraA03t14439Z' => 'bra', 'BraA04t15860Z' => 'bra', 'BraA05t19511Z' => 'bra', 'BraA05t22746Z' => 'bra', 'BraA09t35767Z' => 'bra', 'BraA09t40732Z' => 'bra', 'BraA10t45233Z' => 'bra', 'C03p38720' => 'bna', 'C03p43680' => 'bna', 'C04p06350' => 'bna', 'C04p31800' => 'bna', 'C05p58680' => 'bna', 'C07p52110' => 'bna', 'C08p35760' => 'bna', 'C09p01050' => 'bna', 'C09p72600' => 'bna', 'CAN.G106.2' => 'can', 'CAN.G1482.1' => 'can', 'CAN.G324.12' => 'can', 'CAN.G388.20' => 'can', 'CAN.G412.7' => 'can', 'CAN.G694.32' => 'can', 'CAN.G92.12' => 'can', 'CANSAT11G2353' => 'cansat', 'CANSAT21G1398' => 'cansat', 'CANSAT56G2456' => 'cansat', 'CANSAT56G3031' => 'cansat', 'CANSAT56G4539' => 'cansat', 'CARHR083680' => 'chi', 'CARHR171190' => 'chi', 'CARHR209010' => 'chi', 'CARHR229680' => 'chi', 'CARHR249490' => 'chi', 'Carub.0003s0844' => 'cru', 'Carub.0005s2755' => 'cru', 'Carub.0006s0322' => 'cru', 'Carub.0006s3586' => 'cru', 'Carub.0007s1855' => 'cru', 'Ca_07808_v3' => 'car', 'Ca_09535_v3' => 'car', 'Ca_10548_v3' => 'car', 'Ca_19913_v3' => 'car', 'Ca_19916_v3' => 'car', 'Ca_19975_v3' => 'car', 'CBR_g22876' => 'cbr', 'CBR_g22879' => 'cbr', 'CBR_g38491' => 'cbr', 'CBR_g54185' => 'cbr', 'CBR_g54190' => 'cbr', 'Cc02_g11020' => 'ccan', 'Cc02_g23920' => 'ccan', 'Cc02_g39860' => 'ccan', 'Cc02_g39870' => 'ccan', 'Cc03_g06760' => 'ccan', 'Cc06_g02450' => 'ccan', 'Cc09_g09450' => 'ccan', 'CDE02G1959' => 'cde', 'CDE04G0600' => 'cde', 'CDE07G1996' => 'cde', 'CDE07G2078' => 'cde', 'CDE11G0611' => 'cde', 'Cfa001683' => 'cfa', 'Cfa001734' => 'cfa', 'Cfa001737' => 'cfa', 'Cfa003751' => 'cfa', 'Cfa012019' => 'cfa', 'Cfa017353' => 'cfa', 'Cfa017732' => 'cfa', 'Cfa022464' => 'cfa', 'Ciclev10012400m.g' => 'ccl', 'Ciclev10021242m.g' => 'ccl', 'Ciclev10021302m.g' => 'ccl', 'Ciclev10021463m.g' => 'ccl', 'Ciclev10032359m.g' => 'ccl', 'CiPaw.01G081000' => 'cil', 'CiPaw.01G262500' => 'cil', 'CiPaw.01G269800' => 'cil', 'CiPaw.02G168400' => 'cil', 'CiPaw.05G119500' => 'cil', 'CiPaw.11G147300' => 'cil', 'ClCG01G003630' => 'cla', 'ClCG05G000510' => 'cla', 'ClCG05G002300' => 'cla', 'ClCG08G007650' => 'cla', 'ClCG10G021250' => 'cla', 'COL.COLO4_06218' => 'col', 'COL.COLO4_12538' => 'col', 'COL.COLO4_14775' => 'col', 'COL.COLO4_23875' => 'col', 'Cpa.g.sc141.16' => 'cpa', 'Cpa.g.sc169.16' => 'cpa', 'Cpa.g.sc244.4' => 'cpa', 'Cpa.g.sc244.5' => 'cpa', 'Cpa.g.sc29.87' => 'cpa', 'Cpa.g.sc53.115' => 'cpa', 'Cre03.g207502' => 'cre', 'Cre06.g277000' => 'cre', 'Cre09.g394050' => 'cre', 'CsaV3_3G007680' => 'csa', 'CsaV3_3G009710' => 'csa', 'CsaV3_3G034790' => 'csa', 'CsaV3_5G003750' => 'csa', 'CsaV3_6G036620' => 'csa', 'CSS0002288' => 'camsi', 'CSS0011250' => 'camsi', 'CSS0021619' => 'camsi', 'CSS0046701' => 'camsi', 'DCAR_006420' => 'dca', 'DCAR_006865' => 'dca', 'DCAR_008558' => 'dca', 'DCAR_028754' => 'dca', 'DCAR_028755' => 'dca', 'Dinv31218' => 'din', 'Dinv32371' => 'din', 'Dinv34250' => 'din', 'Dinv37156' => 'din', 'Dinv43704' => 'din', 'Duzib093G1811' => 'dzi', 'Duzib106G1622' => 'dzi', 'Duzib114G0504' => 'dzi', 'Duzib128G0338' => 'dzi', 'Duzib128G1577' => 'dzi', 'Duzib133G0104' => 'dzi', 'Duzib133G1080' => 'dzi', 'Duzib138G0324' => 'dzi', 'Duzib138G0394' => 'dzi', 'Duzib205G0122' => 'dzi', 'Duzib268G1020' => 'dzi', 'Duzib268G1359' => 'dzi', 'ECA232G3929' => 'eca', 'ECA236G2210' => 'eca', 'ECA236G2287' => 'eca', 'ECA240G4568' => 'eca', 'ECA247G0894' => 'eca', 'EL10Ac1g00200' => 'bvu', 'EL10Ac1g00886' => 'bvu', 'EL10As1g23091' => 'bvu', 'EL10As1g23092' => 'bvu', 'Eucgr.A01284' => 'egr', 'Eucgr.A01285' => 'egr', 'Eucgr.D02456' => 'egr', 'Eucgr.E00018' => 'egr', 'Eucgr.E01439' => 'egr', 'Eucgr.G02859' => 'egr', 'FAN01G0168' => 'fan', 'FAN01G0453' => 'fan', 'FAN01G2761' => 'fan', 'FAN02G1239' => 'fan', 'FAN03G0645' => 'fan', 'FAN03G2707' => 'fan', 'FAN03G2978' => 'fan', 'FAN04G0227' => 'fan', 'FAN06G0091' => 'fan', 'FAN06G1418' => 'fan', 'FAN06G1512' => 'fan', 'FAN06G1986' => 'fan', 'FAN06G2905' => 'fan', 'FAN06G4325' => 'fan', 'FAN08G0033' => 'fan', 'FAN09G0642' => 'fan', 'FAN10G1763' => 'fan', 'FAN10G2026' => 'fan', 'FAN10G2513' => 'fan', 'FAN10G3402' => 'fan', 'FAN10G3564' => 'fan', 'FAN10G3987' => 'fan', 'FAN13G1490' => 'fan', 'FAN14G5857' => 'fan', 'FAN18G1188' => 'fan', 'FvH4_5g00750' => 'fve', 'FvH4_6g13410' => 'fve', 'FvH4_7g11740' => 'fve', 'FvH4_7g17410' => 'fve', 'FvH4_7g18860' => 'fve', 'Glyma.01G099100' => 'gma', 'Glyma.01G142300' => 'gma', 'Glyma.03G025500' => 'gma', 'Glyma.03G069700' => 'gma', 'Glyma.03G260000' => 'gma', 'Glyma.09G269800' => 'gma', 'Glyma.10G208700' => 'gma', 'Glyma.18G220400' => 'gma', 'Glyma.20G182000' => 'gma', 'Gohir.A01G221726' => 'ghi', 'Gohir.A07G134600' => 'ghi', 'Gohir.A07G146000' => 'ghi', 'Gohir.A08G173900' => 'ghi', 'Gohir.A09G194900' => 'ghi', 'Gohir.A10G204100' => 'ghi', 'Gohir.A11G080600' => 'ghi', 'Gohir.A11G327500' => 'ghi', 'Gohir.A12G101800' => 'ghi', 'Gohir.D01G211200' => 'ghi', 'Gohir.D07G139200' => 'ghi', 'Gohir.D07G152100' => 'ghi', 'Gohir.D08G192600' => 'ghi', 'Gohir.D09G189200' => 'ghi', 'Gohir.D10G212000' => 'ghi', 'Gohir.D11G085200' => 'ghi', 'Gohir.D11G346400' => 'ghi', 'Gohir.D12G104800' => 'ghi', 'Gorai.001G151300' => 'gra', 'Gorai.001G174100' => 'gra', 'Gorai.002G257000' => 'gra', 'Gorai.004G202600' => 'gra', 'Gorai.007G090900' => 'gra', 'Gorai.007G376700' => 'gra', 'Gorai.008G114100' => 'gra', 'Gorai.011G237900' => 'gra', 'GSVIVG01005450001' => 'vvi', 'GSVIVG01016232001' => 'vvi', 'GSVIVG01026157001' => 'vvi', 'GSVIVG01027419001' => 'vvi', 'GSVIVG01027631001' => 'vvi', 'GSVIVG01034143001' => 'vvi', 'HanXRQChr03g0093921' => 'han', 'HanXRQChr04g0120001' => 'han', 'HanXRQChr04g0122561' => 'han', 'HanXRQChr09g0246851' => 'han', 'HanXRQChr10g0293311' => 'han', 'HanXRQChr13g0425231' => 'han', 'HanXRQChr16g0532571' => 'han', 'Haze_09050' => 'cav', 'Haze_15715' => 'cav', 'Haze_15716' => 'cav', 'Haze_16803' => 'cav', 'Haze_16850' => 'cav', 'Hma1.2p1_0301F.1_g118655' => 'hma', 'Hma1.2p1_0309F.1_g120590' => 'hma', 'Hma1.2p1_0936F.1_g238900' => 'hma', 'Hma1.2p1_3552F.1_g336740' => 'hma', 'HPP92_003520' => 'vpl', 'HPP92_006628' => 'vpl', 'HPP92_006645' => 'vpl', 'HPP92_014669' => 'vpl', 'HPP92_015077' => 'vpl', 'Hund16742' => 'sun', 'Hund17022' => 'sun', 'Lalb_Chr02g0152131' => 'lal', 'Lalb_Chr05g0225371' => 'lal', 'Lalb_Chr07g0189841' => 'lal', 'Lalb_Chr07g0192961' => 'lal', 'Lalb_Chr12g0208221' => 'lal', 'Lalb_Chr13g0291211' => 'lal', 'Lalb_Chr13g0291781' => 'lal', 'Lalb_Chr18g0044651' => 'lal', 'Lalb_Chr21g0313731' => 'lal', 'Lj1g0022533' => 'lja', 'Lj2A18T50' => 'lonja', 'Lj2A92G93' => 'lonja', 'Lj3A965T73' => 'lonja', 'Lj3g0000673' => 'lja', 'Lj3g0002666' => 'lja', 'Lj4g0016985' => 'lja', 'Lj5g0003625' => 'lja', 'Lj7A529G36' => 'lonja', 'Lj9A569T49' => 'lonja', 'Lj9A604T63' => 'lonja', 'Lsat_1_v5_gn_3_132060' => 'lsa', 'Lsat_1_v5_gn_4_68941' => 'lsa', 'Lsat_1_v5_gn_5_95580' => 'lsa', 'Lsat_1_v5_gn_7_161' => 'lsa', 'Lsat_1_v5_gn_7_7041' => 'lsa', 'Lsat_1_v5_gn_9_33481' => 'lsa', 'Lsat_1_v5_gn_9_68260' => 'lsa', 'Manes.01G073100' => 'mes', 'Manes.01G266300' => 'mes', 'Manes.02G033300' => 'mes', 'Manes.05G017900' => 'mes', 'Manes.05G046100' => 'mes', 'Manes.08G080900' => 'mes', 'Manes.10G049400' => 'mes', 'Mapoly0009s0186' => 'mpo', 'Mapoly0036s0118' => 'mpo', 'Mapoly0101s0046' => 'mpo', 'MBI04_g30218_MAGBIO' => 'mbi', 'MBI04_g35564_MAGBIO' => 'mbi', 'MBI12_g34011_MAGBIO' => 'mbi', 'MBI14_g04655_MAGBIO' => 'mbi', 'MCO07G653' => 'mco', 'MCO10G173' => 'mco', 'MD01G1087100' => 'mdo', 'MD01G1104200' => 'mdo', 'MD02G1205100' => 'mdo', 'MD04G1079200' => 'mdo', 'MD04G1131400' => 'mdo', 'MD07G1121600' => 'mdo', 'MD07G1157300' => 'mdo', 'MD07G1171000' => 'mdo', 'MD12G1144500' => 'mdo', 'Medtr1g094610' => 'mtr', 'Medtr4g021795' => 'mtr', 'Medtr4g023760' => 'mtr', 'Medtr7g118050' => 'mtr', 'MELO3C005582.2' => 'cme', 'MELO3C005989.2' => 'cme', 'MELO3C006192.2' => 'cme', 'MELO3C009248.2' => 'cme', 'MELO3C019817.2' => 'cme', 'Migut.B01625' => 'egut', 'Migut.B01915' => 'egut', 'Migut.F01721' => 'egut', 'Migut.J00314' => 'egut', 'MSTRG.20742' => 'ama', 'MSTRG.8134' => 'ama', 'Nitab4.5_0000096g0010' => 'nta', 'Nitab4.5_0000202g0030' => 'nta', 'Nitab4.5_0000216g0370' => 'nta', 'Nitab4.5_0000457g0230' => 'nta', 'Nitab4.5_0001702g0170' => 'nta', 'Nitab4.5_0003607g0010' => 'nta', 'Nitab4.5_0004917g0020' => 'nta', 'Nitab4.5_0007059g0010' => 'nta', 'Nitab4.5_0007184g0010' => 'nta', 'Nitab4.5_0007346g0020' => 'nta', 'Nn1g00410' => 'nnu', 'Nn1g01252' => 'nnu', 'Nn2g11168' => 'nnu', 'Nn2g13403' => 'nnu', 'Nn2g13760' => 'nnu', 'Nn4g26380' => 'nnu', 'Oeu000806.2' => 'oeu', 'Oeu005788.1' => 'oeu', 'Oeu006900.3' => 'oeu', 'Oeu007797.1' => 'oeu', 'Oeu011932.1' => 'oeu', 'Oeu022739.1' => 'oeu', 'Oeu037918.1' => 'oeu', 'Oeu055490.2' => 'oeu', 'Os01g0844400' => 'osa', 'Os02g0819100' => 'osa', 'Os03g0804300' => 'osa', 'Os05g0458000' => 'osa', 'Os07g0467800' => 'osa', 'Os12g0602200' => 'osa', 'Peaxi162Scf00013g03444' => 'pax', 'Peaxi162Scf00094g01120' => 'pax', 'Peaxi162Scf00191g01211' => 'pax', 'Peaxi162Scf00238g01110' => 'pax', 'Peaxi162Scf00330g00719' => 'pax', 'Peaxi162Scf00627g00018' => 'pax', 'PGR031G2686' => 'pgr', 'PGR042G0809' => 'pgr', 'PGR142G0193' => 'pgr', 'PGSC0003DMG400011066' => 'stu', 'PGSC0003DMG400012041' => 'stu', 'PGSC0003DMG400013678' => 'stu', 'PGSC0003DMG400023477' => 'stu', 'PGSC0003DMG400025956' => 'stu', 'PGSC0003DMG401019151' => 'stu', 'Phvul.006G116400' => 'pvu', 'Phvul.007G097300' => 'pvu', 'Phvul.010G015000' => 'pvu', 'Phvul.010G083900' => 'pvu', 'Potri.001G117100' => 'ptr', 'Potri.002G147300' => 'ptr', 'Potri.003G115600' => 'ptr', 'Potri.006G087400' => 'ptr', 'Potri.010G226100' => 'ptr', 'Potri.014G069200' => 'ptr', 'Potri.014G104000' => 'ptr', 'Potri.016G100200' => 'ptr', 'Pp3c10_20450' => 'ppa', 'Pp3c1_42400' => 'ppa', 'Pp3c3_24390' => 'ppa', 'Pp3c3_2860' => 'ppa', 'PRCOL_00003193' => 'pco', 'Prupe.2G144500' => 'ppe', 'Prupe.2G195700' => 'ppe', 'Prupe.2G209800' => 'ppe', 'Prupe.5G080000' => 'ppe', 'Prupe.6G257900' => 'ppe', 'Psat3g001160' => 'psa', 'Psat6g181880' => 'psa', 'Psat7g233720' => 'psa', 'PSO063G7587' => 'pso', 'PSO339G2145' => 'pso', 'PSO339G3369' => 'pso', 'PSO478G2747' => 'pso', 'PSO513G0140' => 'pso', 'PSO782G1614' => 'pso', 'PSO782G4889' => 'pso', 'PSO782G5485' => 'pso', 'PSO801G0241' => 'pso', 'QL07p048854' => 'qlo', 'QL08p046745' => 'qlo', 'QL08p052606' => 'qlo', 'QL08p053414' => 'qlo', 'QL08p054868' => 'qlo', 'RcHm_v2.0_Chr1g0350251' => 'rch', 'RcHm_v2.0_Chr1g0360851' => 'rch', 'RcHm_v2.0_Chr1g0362791' => 'rch', 'RcHm_v2.0_Chr3g0466281' => 'rch', 'RcHm_v2.0_Chr7g0201481' => 'rch', 'Rhsim01G0148600' => 'rsi', 'Rhsim05G0194400' => 'rsi', 'Rhsim07G0000700' => 'rsi', 'Rhsim07G0000800' => 'rsi', 'Rhsim07G0027900' => 'rsi', 'Rhsim09G0149500' => 'rsi', 'RhsimUnG0186900' => 'rsi', 'Sabra01G0089900' => 'sbr', 'Sabra02G0114700' => 'sbr', 'Sabra02G0116300' => 'sbr', 'Sabra03G0080100' => 'sbr', 'Sabra08G0024300' => 'sbr', 'Sabra10G0174300' => 'sbr', 'Sabra14G0048900' => 'sbr', 'Sabra14G0076500' => 'sbr', 'SalBow5G2513' => 'sbo', 'Sc01g0002300' => 'sci', 'Sc01g0004450' => 'sci', 'Sc06g0001680' => 'sci', 'Sc23g0003580' => 'sci', 'Sed0000913' => 'sed', 'Sed0001655' => 'sed', 'Sed0007745' => 'sed', 'Sed0010951' => 'sed', 'Sed0017599' => 'sed', 'Sed0021405' => 'sed', 'Sed0022810' => 'sed', 'SEGI_07099' => 'sgi', 'SEGI_11931' => 'sgi', 'SEGI_13187' => 'sgi', 'SEGI_29958' => 'sgi', 'SEGI_36351' => 'sgi', 'SGA_v2.0_scaffold126G33770' => 'sas', 'SGA_v2.0_scaffold153G37003' => 'sas', 'SGA_v2.0_scaffold2G01359' => 'sas', 'SGA_v2.0_scaffold5G03064' => 'sas', 'SGA_v2.0_scaffold95G28903' => 'sas', 'SHI12701' => 'shi', 'SHI26410' => 'shi', 'SHI38997' => 'shi', 'SHI53759' => 'shi', 'SHI53886' => 'shi', 'SHI54714' => 'shi', 'SMO011G0041' => 'smo', 'SMO146G0251' => 'smo', 'SMO160G0004' => 'smo', 'SMO174G0057' => 'smo', 'SMO244G0089' => 'smo', 'SMO296G0011' => 'smo', 'Solyc01g091280.3' => 'sly', 'Solyc05g047610.3' => 'sly', 'Solyc05g047640.3' => 'sly', 'Solyc05g055630.3' => 'sly', 'Solyc10g018160.2' => 'sly', 'Solyc10g084820.2' => 'sly', 'Solyc10g086565.2' => 'sly', 'Sopen01g037030' => 'spe', 'Sopen05g027920' => 'spe', 'Sopen05g034070' => 'spe', 'Sopen10g007260' => 'spe', 'Sopen10g034260' => 'spe', 'Sopen10g035950' => 'spe', 'Sp3g07710' => 'spa', 'Sp4g27420' => 'spa', 'Sp5g02450' => 'spa', 'Sp6g01280' => 'spa', 'Sp6g38480' => 'spa', 'Sp7g20780' => 'spa', 'TAR374G1413' => 'tar', 'TAR623G1777' => 'tar', 'TAR629G2370' => 'tar', 'TAR633G1759' => 'tar', 'TAR636G3387' => 'tar', 'THA.LOC104802447' => 'tha', 'THA.LOC104813916' => 'tha', 'THA.LOC104816423' => 'tha', 'THA.LOC104817246' => 'tha', 'THA.LOC104825895' => 'tha', 'Thecc.01G335200' => 'tca', 'Thecc.01G377400' => 'tca', 'Thecc.03G262200' => 'tca', 'Thecc.05G036800' => 'tca', 'Thecc.10G080500' => 'tca', 'Thecc.10G080800' => 'tca', 'Thhalv10001560m.g' => 'esa', 'Thhalv10006120m.g' => 'esa', 'Thhalv10014375m.g' => 'esa', 'Thhalv10021264m.g' => 'esa', 'Thhalv10028856m.g' => 'esa', 'TPR.G1914' => 'tpr', 'TPR.G4757' => 'tpr', 'TPR.G5595' => 'tpr', 'TWI14G0952' => 'twi', 'TWI14G1307' => 'twi', 'TWI38G2143' => 'twi', 'TWI59G0826' => 'twi', 'TWI77G0527' => 'twi', 'TWI81G0150' => 'twi', 'unitig_21.g21018' => 'ugi', 'unitig_26.g9725' => 'ugi', 'unitig_744.g24653' => 'ugi', 'unitig_749.g13778' => 'ugi', 'unitig_899.g15035' => 'ugi', 'vmacro04296' => 'vma', 'vmacro04852' => 'vma', 'vmacro13404' => 'vma', 'vmacro20169' => 'vma', 'vmacro21014' => 'vma', 'VMungo0331G0237' => 'vmu', 'VMungo0331G0706' => 'vmu', 'VMungo0331G1361' => 'vmu', 'VMungo0331G1489' => 'vmu', 'VMungo0540G1037' => 'vmu', 'VMungo0720G2487' => 'vmu', 'VMungo0720G2721' => 'vmu', 'Zm00001eb086860' => 'zma', 'Zm00001eb104760' => 'zma', 'Zm00001eb148220' => 'zma', 'Zm00001eb259030' => 'zma', 'Zm00001eb289590' => 'zma', 'Zm00001eb420150' => 'zma' ), 'gf_id' => 'HOM05D000968', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000968' ), 'data_identifier' => 'HOM05D000968', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000968', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p31690' => 'bna', 'A03p36040' => 'bna', 'A03p53730' => 'bna', 'A04p01410' => 'bna', 'A05p05420' => 'bna', 'A05p39630' => 'bna', 'A05p39640' => 'bna', 'A09p00970' => 'bna', 'A09p53060' => 'bna', 'A10p31890' => 'bna', 'Aa31LG10G15040' => 'aar', 'Aa31LG1G21090' => 'aar', 'Aa31LG1G26900' => 'aar', 'Aa31LG3G1820' => 'aar', 'Aa31LG5G1100' => 'aar', 'Aa31LG6G4740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2265' => 'aag', 'Actinidia07998' => 'ach', 'Actinidia11266' => 'ach', 'Actinidia12682' => 'ach', 'Actinidia26479' => 'ach', 'Actinidia31406' => 'ach', 'Actinidia32437' => 'ach', 'Actinidia38862' => 'ach', 'Ah.05g174230' => 'amhyb', 'Ah.05g179070' => 'amhyb', 'Ah.05g179090' => 'amhyb', 'Ah.12g059950' => 'amhyb', 'AL3G20480' => 'aly', 'AL4G44520' => 'aly', 'AL5G43110' => 'aly', 'AL6G13890' => 'aly', 'AL6G52620' => 'aly', 'AL7G30830' => 'aly', 'Aqoxy1G00899' => 'aox', 'Aqoxy5G04333' => 'aox', 'Aqoxy7G00641' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3IZ0NN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4EF6AW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W9P8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79GA3M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C43NQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFCU6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G95YVJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCHK29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LU1UG8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX91RN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGB4B1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8DA0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9H7JI' => 'arhy', 'AT3G09320' => 'ath', 'AT3G60800' => 'ath', 'AT4G00840' => 'ath', 'AT4G22750' => 'ath', 'AT5G04270' => 'ath', 'ATR0090G003' => 'atr', 'ATR0559G349' => 'atr', 'ATR0680G261' => 'atr', 'ATR0810G048' => 'atr', 'Atru.chr12.831' => 'acertr', 'Atru.chr5.303' => 'acertr', 'Atru.chr5.748' => 'acertr', 'Atru.chr8.1999' => 'acertr', 'Atru.chr9.1436' => 'acertr', 'AUR62004211' => 'cqu', 'AUR62004548' => 'cqu', 'AUR62013637' => 'cqu', 'AUR62022662' => 'cqu', 'AUR62025777' => 'cqu', 'AUR62042386' => 'cqu', 'BcaB01g02310' => 'bca', 'BcaB01g06062' => 'bca', 'BcaB02g08975' => 'bca', 'BcaB02g08980' => 'bca', 'BcaC01g04228' => 'bca', 'BcaC01g06830' => 'bca', 'BcaC02g10186' => 'bca', 'BcaC02g12214' => 'bca', 'BcaC04g24101' => 'bca', 'BcaC05g29520' => 'bca', 'BcaC05g29661' => 'bca', 'BcaC06g32130' => 'bca', 'BcaC06g32131' => 'bca', 'BcaC07g40601' => 'bca', 'BcaC07g42641' => 'bca', 'BcaNung01038' => 'bca', 'BcaNung01676' => 'bca', 'BcaNung02480' => 'bca', 'BcaNung07376' => 'bca', 'BolC3t16146H' => 'bol', 'BolC3t16637H' => 'bol', 'BolC4t22257H' => 'bol', 'BolC4t24728H' => 'bol', 'BolC5t34517H' => 'bol', 'BolC7t45703H' => 'bol', 'BolC8t51166H' => 'bol', 'BolC9t53038H' => 'bol', 'BolC9t60000H' => 'bol', 'BraA01t01345Z' => 'bra', 'BraA01t01346Z' => 'bra', 'BraA01t01348Z' => 'bra', 'BraA03t12347Z' => 'bra', 'BraA03t12775Z' => 'bra', 'BraA03t14439Z' => 'bra', 'BraA04t15860Z' => 'bra', 'BraA05t19511Z' => 'bra', 'BraA05t22746Z' => 'bra', 'BraA09t35767Z' => 'bra', 'BraA09t40732Z' => 'bra', 'BraA10t45233Z' => 'bra', 'C03p38720' => 'bna', 'C03p43680' => 'bna', 'C04p06350' => 'bna', 'C04p31800' => 'bna', 'C05p58680' => 'bna', 'C07p52110' => 'bna', 'C08p35760' => 'bna', 'C09p01050' => 'bna', 'C09p72600' => 'bna', 'CAN.G106.2' => 'can', 'CAN.G1482.1' => 'can', 'CAN.G324.12' => 'can', 'CAN.G388.20' => 'can', 'CAN.G412.7' => 'can', 'CAN.G694.32' => 'can', 'CAN.G92.12' => 'can', 'CANSAT11G2353' => 'cansat', 'CANSAT21G1398' => 'cansat', 'CANSAT56G2456' => 'cansat', 'CANSAT56G3031' => 'cansat', 'CANSAT56G4539' => 'cansat', 'CARHR083680' => 'chi', 'CARHR171190' => 'chi', 'CARHR209010' => 'chi', 'CARHR229680' => 'chi', 'CARHR249490' => 'chi', 'Carub.0003s0844' => 'cru', 'Carub.0005s2755' => 'cru', 'Carub.0006s0322' => 'cru', 'Carub.0006s3586' => 'cru', 'Carub.0007s1855' => 'cru', 'Ca_07808_v3' => 'car', 'Ca_09535_v3' => 'car', 'Ca_10548_v3' => 'car', 'Ca_19913_v3' => 'car', 'Ca_19916_v3' => 'car', 'Ca_19975_v3' => 'car', 'CBR_g22876' => 'cbr', 'CBR_g22879' => 'cbr', 'CBR_g38491' => 'cbr', 'CBR_g54185' => 'cbr', 'CBR_g54190' => 'cbr', 'Cc02_g11020' => 'ccan', 'Cc02_g23920' => 'ccan', 'Cc02_g39860' => 'ccan', 'Cc02_g39870' => 'ccan', 'Cc03_g06760' => 'ccan', 'Cc06_g02450' => 'ccan', 'Cc09_g09450' => 'ccan', 'CDE02G1959' => 'cde', 'CDE04G0600' => 'cde', 'CDE07G1996' => 'cde', 'CDE07G2078' => 'cde', 'CDE11G0611' => 'cde', 'Cfa001683' => 'cfa', 'Cfa001734' => 'cfa', 'Cfa001737' => 'cfa', 'Cfa003751' => 'cfa', 'Cfa012019' => 'cfa', 'Cfa017353' => 'cfa', 'Cfa017732' => 'cfa', 'Cfa022464' => 'cfa', 'Ciclev10012400m.g' => 'ccl', 'Ciclev10021242m.g' => 'ccl', 'Ciclev10021302m.g' => 'ccl', 'Ciclev10021463m.g' => 'ccl', 'Ciclev10032359m.g' => 'ccl', 'CiPaw.01G081000' => 'cil', 'CiPaw.01G262500' => 'cil', 'CiPaw.01G269800' => 'cil', 'CiPaw.02G168400' => 'cil', 'CiPaw.05G119500' => 'cil', 'CiPaw.11G147300' => 'cil', 'ClCG01G003630' => 'cla', 'ClCG05G000510' => 'cla', 'ClCG05G002300' => 'cla', 'ClCG08G007650' => 'cla', 'ClCG10G021250' => 'cla', 'COL.COLO4_06218' => 'col', 'COL.COLO4_12538' => 'col', 'COL.COLO4_14775' => 'col', 'COL.COLO4_23875' => 'col', 'Cpa.g.sc141.16' => 'cpa', 'Cpa.g.sc169.16' => 'cpa', 'Cpa.g.sc244.4' => 'cpa', 'Cpa.g.sc244.5' => 'cpa', 'Cpa.g.sc29.87' => 'cpa', 'Cpa.g.sc53.115' => 'cpa', 'Cre03.g207502' => 'cre', 'Cre06.g277000' => 'cre', 'Cre09.g394050' => 'cre', 'CsaV3_3G007680' => 'csa', 'CsaV3_3G009710' => 'csa', 'CsaV3_3G034790' => 'csa', 'CsaV3_5G003750' => 'csa', 'CsaV3_6G036620' => 'csa', 'CSS0002288' => 'camsi', 'CSS0011250' => 'camsi', 'CSS0021619' => 'camsi', 'CSS0046701' => 'camsi', 'DCAR_006420' => 'dca', 'DCAR_006865' => 'dca', 'DCAR_008558' => 'dca', 'DCAR_028754' => 'dca', 'DCAR_028755' => 'dca', 'Dinv31218' => 'din', 'Dinv32371' => 'din', 'Dinv34250' => 'din', 'Dinv37156' => 'din', 'Dinv43704' => 'din', 'Duzib093G1811' => 'dzi', 'Duzib106G1622' => 'dzi', 'Duzib114G0504' => 'dzi', 'Duzib128G0338' => 'dzi', 'Duzib128G1577' => 'dzi', 'Duzib133G0104' => 'dzi', 'Duzib133G1080' => 'dzi', 'Duzib138G0324' => 'dzi', 'Duzib138G0394' => 'dzi', 'Duzib205G0122' => 'dzi', 'Duzib268G1020' => 'dzi', 'Duzib268G1359' => 'dzi', 'ECA232G3929' => 'eca', 'ECA236G2210' => 'eca', 'ECA236G2287' => 'eca', 'ECA240G4568' => 'eca', 'ECA247G0894' => 'eca', 'EL10Ac1g00200' => 'bvu', 'EL10Ac1g00886' => 'bvu', 'EL10As1g23091' => 'bvu', 'EL10As1g23092' => 'bvu', 'Eucgr.A01284' => 'egr', 'Eucgr.A01285' => 'egr', 'Eucgr.D02456' => 'egr', 'Eucgr.E00018' => 'egr', 'Eucgr.E01439' => 'egr', 'Eucgr.G02859' => 'egr', 'FAN01G0168' => 'fan', 'FAN01G0453' => 'fan', 'FAN01G2761' => 'fan', 'FAN02G1239' => 'fan', 'FAN03G0645' => 'fan', 'FAN03G2707' => 'fan', 'FAN03G2978' => 'fan', 'FAN04G0227' => 'fan', 'FAN06G0091' => 'fan', 'FAN06G1418' => 'fan', 'FAN06G1512' => 'fan', 'FAN06G1986' => 'fan', 'FAN06G2905' => 'fan', 'FAN06G4325' => 'fan', 'FAN08G0033' => 'fan', 'FAN09G0642' => 'fan', 'FAN10G1763' => 'fan', 'FAN10G2026' => 'fan', 'FAN10G2513' => 'fan', 'FAN10G3402' => 'fan', 'FAN10G3564' => 'fan', 'FAN10G3987' => 'fan', 'FAN13G1490' => 'fan', 'FAN14G5857' => 'fan', 'FAN18G1188' => 'fan', 'FvH4_5g00750' => 'fve', 'FvH4_6g13410' => 'fve', 'FvH4_7g11740' => 'fve', 'FvH4_7g17410' => 'fve', 'FvH4_7g18860' => 'fve', 'Glyma.01G099100' => 'gma', 'Glyma.01G142300' => 'gma', 'Glyma.03G025500' => 'gma', 'Glyma.03G069700' => 'gma', 'Glyma.03G260000' => 'gma', 'Glyma.09G269800' => 'gma', 'Glyma.10G208700' => 'gma', 'Glyma.18G220400' => 'gma', 'Glyma.20G182000' => 'gma', 'Gohir.A01G221726' => 'ghi', 'Gohir.A07G134600' => 'ghi', 'Gohir.A07G146000' => 'ghi', 'Gohir.A08G173900' => 'ghi', 'Gohir.A09G194900' => 'ghi', 'Gohir.A10G204100' => 'ghi', 'Gohir.A11G080600' => 'ghi', 'Gohir.A11G327500' => 'ghi', 'Gohir.A12G101800' => 'ghi', 'Gohir.D01G211200' => 'ghi', 'Gohir.D07G139200' => 'ghi', 'Gohir.D07G152100' => 'ghi', 'Gohir.D08G192600' => 'ghi', 'Gohir.D09G189200' => 'ghi', 'Gohir.D10G212000' => 'ghi', 'Gohir.D11G085200' => 'ghi', 'Gohir.D11G346400' => 'ghi', 'Gohir.D12G104800' => 'ghi', 'Gorai.001G151300' => 'gra', 'Gorai.001G174100' => 'gra', 'Gorai.002G257000' => 'gra', 'Gorai.004G202600' => 'gra', 'Gorai.007G090900' => 'gra', 'Gorai.007G376700' => 'gra', 'Gorai.008G114100' => 'gra', 'Gorai.011G237900' => 'gra', 'GSVIVG01005450001' => 'vvi', 'GSVIVG01016232001' => 'vvi', 'GSVIVG01026157001' => 'vvi', 'GSVIVG01027419001' => 'vvi', 'GSVIVG01027631001' => 'vvi', 'GSVIVG01034143001' => 'vvi', 'HanXRQChr03g0093921' => 'han', 'HanXRQChr04g0120001' => 'han', 'HanXRQChr04g0122561' => 'han', 'HanXRQChr09g0246851' => 'han', 'HanXRQChr10g0293311' => 'han', 'HanXRQChr13g0425231' => 'han', 'HanXRQChr16g0532571' => 'han', 'Haze_09050' => 'cav', 'Haze_15715' => 'cav', 'Haze_15716' => 'cav', 'Haze_16803' => 'cav', 'Haze_16850' => 'cav', 'Hma1.2p1_0301F.1_g118655' => 'hma', 'Hma1.2p1_0309F.1_g120590' => 'hma', 'Hma1.2p1_0936F.1_g238900' => 'hma', 'Hma1.2p1_3552F.1_g336740' => 'hma', 'HPP92_003520' => 'vpl', 'HPP92_006628' => 'vpl', 'HPP92_006645' => 'vpl', 'HPP92_014669' => 'vpl', 'HPP92_015077' => 'vpl', 'Hund16742' => 'sun', 'Hund17022' => 'sun', 'Lalb_Chr02g0152131' => 'lal', 'Lalb_Chr05g0225371' => 'lal', 'Lalb_Chr07g0189841' => 'lal', 'Lalb_Chr07g0192961' => 'lal', 'Lalb_Chr12g0208221' => 'lal', 'Lalb_Chr13g0291211' => 'lal', 'Lalb_Chr13g0291781' => 'lal', 'Lalb_Chr18g0044651' => 'lal', 'Lalb_Chr21g0313731' => 'lal', 'Lj1g0022533' => 'lja', 'Lj2A18T50' => 'lonja', 'Lj2A92G93' => 'lonja', 'Lj3A965T73' => 'lonja', 'Lj3g0000673' => 'lja', 'Lj3g0002666' => 'lja', 'Lj4g0016985' => 'lja', 'Lj5g0003625' => 'lja', 'Lj7A529G36' => 'lonja', 'Lj9A569T49' => 'lonja', 'Lj9A604T63' => 'lonja', 'Lsat_1_v5_gn_3_132060' => 'lsa', 'Lsat_1_v5_gn_4_68941' => 'lsa', 'Lsat_1_v5_gn_5_95580' => 'lsa', 'Lsat_1_v5_gn_7_161' => 'lsa', 'Lsat_1_v5_gn_7_7041' => 'lsa', 'Lsat_1_v5_gn_9_33481' => 'lsa', 'Lsat_1_v5_gn_9_68260' => 'lsa', 'Manes.01G073100' => 'mes', 'Manes.01G266300' => 'mes', 'Manes.02G033300' => 'mes', 'Manes.05G017900' => 'mes', 'Manes.05G046100' => 'mes', 'Manes.08G080900' => 'mes', 'Manes.10G049400' => 'mes', 'Mapoly0009s0186' => 'mpo', 'Mapoly0036s0118' => 'mpo', 'Mapoly0101s0046' => 'mpo', 'MBI04_g30218_MAGBIO' => 'mbi', 'MBI04_g35564_MAGBIO' => 'mbi', 'MBI12_g34011_MAGBIO' => 'mbi', 'MBI14_g04655_MAGBIO' => 'mbi', 'MCO07G653' => 'mco', 'MCO10G173' => 'mco', 'MD01G1087100' => 'mdo', 'MD01G1104200' => 'mdo', 'MD02G1205100' => 'mdo', 'MD04G1079200' => 'mdo', 'MD04G1131400' => 'mdo', 'MD07G1121600' => 'mdo', 'MD07G1157300' => 'mdo', 'MD07G1171000' => 'mdo', 'MD12G1144500' => 'mdo', 'Medtr1g094610' => 'mtr', 'Medtr4g021795' => 'mtr', 'Medtr4g023760' => 'mtr', 'Medtr7g118050' => 'mtr', 'MELO3C005582.2' => 'cme', 'MELO3C005989.2' => 'cme', 'MELO3C006192.2' => 'cme', 'MELO3C009248.2' => 'cme', 'MELO3C019817.2' => 'cme', 'Migut.B01625' => 'egut', 'Migut.B01915' => 'egut', 'Migut.F01721' => 'egut', 'Migut.J00314' => 'egut', 'MSTRG.20742' => 'ama', 'MSTRG.8134' => 'ama', 'Nitab4.5_0000096g0010' => 'nta', 'Nitab4.5_0000202g0030' => 'nta', 'Nitab4.5_0000216g0370' => 'nta', 'Nitab4.5_0000457g0230' => 'nta', 'Nitab4.5_0001702g0170' => 'nta', 'Nitab4.5_0003607g0010' => 'nta', 'Nitab4.5_0004917g0020' => 'nta', 'Nitab4.5_0007059g0010' => 'nta', 'Nitab4.5_0007184g0010' => 'nta', 'Nitab4.5_0007346g0020' => 'nta', 'Nn1g00410' => 'nnu', 'Nn1g01252' => 'nnu', 'Nn2g11168' => 'nnu', 'Nn2g13403' => 'nnu', 'Nn2g13760' => 'nnu', 'Nn4g26380' => 'nnu', 'Oeu000806.2' => 'oeu', 'Oeu005788.1' => 'oeu', 'Oeu006900.3' => 'oeu', 'Oeu007797.1' => 'oeu', 'Oeu011932.1' => 'oeu', 'Oeu022739.1' => 'oeu', 'Oeu037918.1' => 'oeu', 'Oeu055490.2' => 'oeu', 'Os01g0844400' => 'osa', 'Os02g0819100' => 'osa', 'Os03g0804300' => 'osa', 'Os05g0458000' => 'osa', 'Os07g0467800' => 'osa', 'Os12g0602200' => 'osa', 'Peaxi162Scf00013g03444' => 'pax', 'Peaxi162Scf00094g01120' => 'pax', 'Peaxi162Scf00191g01211' => 'pax', 'Peaxi162Scf00238g01110' => 'pax', 'Peaxi162Scf00330g00719' => 'pax', 'Peaxi162Scf00627g00018' => 'pax', 'PGR031G2686' => 'pgr', 'PGR042G0809' => 'pgr', 'PGR142G0193' => 'pgr', 'PGSC0003DMG400011066' => 'stu', 'PGSC0003DMG400012041' => 'stu', 'PGSC0003DMG400013678' => 'stu', 'PGSC0003DMG400023477' => 'stu', 'PGSC0003DMG400025956' => 'stu', 'PGSC0003DMG401019151' => 'stu', 'Phvul.006G116400' => 'pvu', 'Phvul.007G097300' => 'pvu', 'Phvul.010G015000' => 'pvu', 'Phvul.010G083900' => 'pvu', 'Potri.001G117100' => 'ptr', 'Potri.002G147300' => 'ptr', 'Potri.003G115600' => 'ptr', 'Potri.006G087400' => 'ptr', 'Potri.010G226100' => 'ptr', 'Potri.014G069200' => 'ptr', 'Potri.014G104000' => 'ptr', 'Potri.016G100200' => 'ptr', 'Pp3c10_20450' => 'ppa', 'Pp3c1_42400' => 'ppa', 'Pp3c3_24390' => 'ppa', 'Pp3c3_2860' => 'ppa', 'PRCOL_00003193' => 'pco', 'Prupe.2G144500' => 'ppe', 'Prupe.2G195700' => 'ppe', 'Prupe.2G209800' => 'ppe', 'Prupe.5G080000' => 'ppe', 'Prupe.6G257900' => 'ppe', 'Psat3g001160' => 'psa', 'Psat6g181880' => 'psa', 'Psat7g233720' => 'psa', 'PSO063G7587' => 'pso', 'PSO339G2145' => 'pso', 'PSO339G3369' => 'pso', 'PSO478G2747' => 'pso', 'PSO513G0140' => 'pso', 'PSO782G1614' => 'pso', 'PSO782G4889' => 'pso', 'PSO782G5485' => 'pso', 'PSO801G0241' => 'pso', 'QL07p048854' => 'qlo', 'QL08p046745' => 'qlo', 'QL08p052606' => 'qlo', 'QL08p053414' => 'qlo', 'QL08p054868' => 'qlo', 'RcHm_v2.0_Chr1g0350251' => 'rch', 'RcHm_v2.0_Chr1g0360851' => 'rch', 'RcHm_v2.0_Chr1g0362791' => 'rch', 'RcHm_v2.0_Chr3g0466281' => 'rch', 'RcHm_v2.0_Chr7g0201481' => 'rch', 'Rhsim01G0148600' => 'rsi', 'Rhsim05G0194400' => 'rsi', 'Rhsim07G0000700' => 'rsi', 'Rhsim07G0000800' => 'rsi', 'Rhsim07G0027900' => 'rsi', 'Rhsim09G0149500' => 'rsi', 'RhsimUnG0186900' => 'rsi', 'Sabra01G0089900' => 'sbr', 'Sabra02G0114700' => 'sbr', 'Sabra02G0116300' => 'sbr', 'Sabra03G0080100' => 'sbr', 'Sabra08G0024300' => 'sbr', 'Sabra10G0174300' => 'sbr', 'Sabra14G0048900' => 'sbr', 'Sabra14G0076500' => 'sbr', 'SalBow5G2513' => 'sbo', 'Sc01g0002300' => 'sci', 'Sc01g0004450' => 'sci', 'Sc06g0001680' => 'sci', 'Sc23g0003580' => 'sci', 'Sed0000913' => 'sed', 'Sed0001655' => 'sed', 'Sed0007745' => 'sed', 'Sed0010951' => 'sed', 'Sed0017599' => 'sed', 'Sed0021405' => 'sed', 'Sed0022810' => 'sed', 'SEGI_07099' => 'sgi', 'SEGI_11931' => 'sgi', 'SEGI_13187' => 'sgi', 'SEGI_29958' => 'sgi', 'SEGI_36351' => 'sgi', 'SGA_v2.0_scaffold126G33770' => 'sas', 'SGA_v2.0_scaffold153G37003' => 'sas', 'SGA_v2.0_scaffold2G01359' => 'sas', 'SGA_v2.0_scaffold5G03064' => 'sas', 'SGA_v2.0_scaffold95G28903' => 'sas', 'SHI12701' => 'shi', 'SHI26410' => 'shi', 'SHI38997' => 'shi', 'SHI53759' => 'shi', 'SHI53886' => 'shi', 'SHI54714' => 'shi', 'SMO011G0041' => 'smo', 'SMO146G0251' => 'smo', 'SMO160G0004' => 'smo', 'SMO174G0057' => 'smo', 'SMO244G0089' => 'smo', 'SMO296G0011' => 'smo', 'Solyc01g091280.3' => 'sly', 'Solyc05g047610.3' => 'sly', 'Solyc05g047640.3' => 'sly', 'Solyc05g055630.3' => 'sly', 'Solyc10g018160.2' => 'sly', 'Solyc10g084820.2' => 'sly', 'Solyc10g086565.2' => 'sly', 'Sopen01g037030' => 'spe', 'Sopen05g027920' => 'spe', 'Sopen05g034070' => 'spe', 'Sopen10g007260' => 'spe', 'Sopen10g034260' => 'spe', 'Sopen10g035950' => 'spe', 'Sp3g07710' => 'spa', 'Sp4g27420' => 'spa', 'Sp5g02450' => 'spa', 'Sp6g01280' => 'spa', 'Sp6g38480' => 'spa', 'Sp7g20780' => 'spa', 'TAR374G1413' => 'tar', 'TAR623G1777' => 'tar', 'TAR629G2370' => 'tar', 'TAR633G1759' => 'tar', 'TAR636G3387' => 'tar', 'THA.LOC104802447' => 'tha', 'THA.LOC104813916' => 'tha', 'THA.LOC104816423' => 'tha', 'THA.LOC104817246' => 'tha', 'THA.LOC104825895' => 'tha', 'Thecc.01G335200' => 'tca', 'Thecc.01G377400' => 'tca', 'Thecc.03G262200' => 'tca', 'Thecc.05G036800' => 'tca', 'Thecc.10G080500' => 'tca', 'Thecc.10G080800' => 'tca', 'Thhalv10001560m.g' => 'esa', 'Thhalv10006120m.g' => 'esa', 'Thhalv10014375m.g' => 'esa', 'Thhalv10021264m.g' => 'esa', 'Thhalv10028856m.g' => 'esa', 'TPR.G1914' => 'tpr', 'TPR.G4757' => 'tpr', 'TPR.G5595' => 'tpr', 'TWI14G0952' => 'twi', 'TWI14G1307' => 'twi', 'TWI38G2143' => 'twi', 'TWI59G0826' => 'twi', 'TWI77G0527' => 'twi', 'TWI81G0150' => 'twi', 'unitig_21.g21018' => 'ugi', 'unitig_26.g9725' => 'ugi', 'unitig_744.g24653' => 'ugi', 'unitig_749.g13778' => 'ugi', 'unitig_899.g15035' => 'ugi', 'vmacro04296' => 'vma', 'vmacro04852' => 'vma', 'vmacro13404' => 'vma', 'vmacro20169' => 'vma', 'vmacro21014' => 'vma', 'VMungo0331G0237' => 'vmu', 'VMungo0331G0706' => 'vmu', 'VMungo0331G1361' => 'vmu', 'VMungo0331G1489' => 'vmu', 'VMungo0540G1037' => 'vmu', 'VMungo0720G2487' => 'vmu', 'VMungo0720G2721' => 'vmu', 'Zm00001eb086860' => 'zma', 'Zm00001eb104760' => 'zma', 'Zm00001eb148220' => 'zma', 'Zm00001eb259030' => 'zma', 'Zm00001eb289590' => 'zma', 'Zm00001eb420150' => 'zma' ) $gf_id = 'HOM05D000968' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000968' ) $data_identifier = 'HOM05D000968' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 19, 'bol' => (int) 9, 'bra' => (int) 12, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 5, 'ccan' => (int) 7, 'cde' => (int) 5, 'cfa' => (int) 8, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 4, 'dca' => (int) 5, 'din' => (int) 5, 'dzi' => (int) 12, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 25, 'fve' => (int) 5, 'gma' => (int) 9, 'ghi' => (int) 18, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 7, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 5, 'sun' => (int) 2, 'lal' => (int) 9, 'lja' => (int) 5, 'lonja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 9, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 2, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 3, 'stu' => (int) 6, 'pvu' => (int) 4, 'ptr' => (int) 8, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 3, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 1, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 5, 'sas' => (int) 5, 'shi' => (int) 6, 'smo' => (int) 6, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 3, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420150' $species_info = array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ) $local_species = 'pgr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000968', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p31690' => 'bna', 'A03p36040' => 'bna', 'A03p53730' => 'bna', 'A04p01410' => 'bna', 'A05p05420' => 'bna', 'A05p39630' => 'bna', 'A05p39640' => 'bna', 'A09p00970' => 'bna', 'A09p53060' => 'bna', 'A10p31890' => 'bna', 'Aa31LG10G15040' => 'aar', 'Aa31LG1G21090' => 'aar', 'Aa31LG1G26900' => 'aar', 'Aa31LG3G1820' => 'aar', 'Aa31LG5G1100' => 'aar', 'Aa31LG6G4740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2265' => 'aag', 'Actinidia07998' => 'ach', 'Actinidia11266' => 'ach', 'Actinidia12682' => 'ach', 'Actinidia26479' => 'ach', 'Actinidia31406' => 'ach', 'Actinidia32437' => 'ach', 'Actinidia38862' => 'ach', 'Ah.05g174230' => 'amhyb', 'Ah.05g179070' => 'amhyb', 'Ah.05g179090' => 'amhyb', 'Ah.12g059950' => 'amhyb', 'AL3G20480' => 'aly', 'AL4G44520' => 'aly', 'AL5G43110' => 'aly', 'AL6G13890' => 'aly', 'AL6G52620' => 'aly', 'AL7G30830' => 'aly', 'Aqoxy1G00899' => 'aox', 'Aqoxy5G04333' => 'aox', 'Aqoxy7G00641' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3IZ0NN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4EF6AW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W9P8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79GA3M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C43NQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFCU6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G95YVJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCHK29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LU1UG8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX91RN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGB4B1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8DA0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9H7JI' => 'arhy', 'AT3G09320' => 'ath', 'AT3G60800' => 'ath', 'AT4G00840' => 'ath', 'AT4G22750' => 'ath', 'AT5G04270' => 'ath', 'ATR0090G003' => 'atr', 'ATR0559G349' => 'atr', 'ATR0680G261' => 'atr', 'ATR0810G048' => 'atr', 'Atru.chr12.831' => 'acertr', 'Atru.chr5.303' => 'acertr', 'Atru.chr5.748' => 'acertr', 'Atru.chr8.1999' => 'acertr', 'Atru.chr9.1436' => 'acertr', 'AUR62004211' => 'cqu', 'AUR62004548' => 'cqu', 'AUR62013637' => 'cqu', 'AUR62022662' => 'cqu', 'AUR62025777' => 'cqu', 'AUR62042386' => 'cqu', 'BcaB01g02310' => 'bca', 'BcaB01g06062' => 'bca', 'BcaB02g08975' => 'bca', 'BcaB02g08980' => 'bca', 'BcaC01g04228' => 'bca', 'BcaC01g06830' => 'bca', 'BcaC02g10186' => 'bca', 'BcaC02g12214' => 'bca', 'BcaC04g24101' => 'bca', 'BcaC05g29520' => 'bca', 'BcaC05g29661' => 'bca', 'BcaC06g32130' => 'bca', 'BcaC06g32131' => 'bca', 'BcaC07g40601' => 'bca', 'BcaC07g42641' => 'bca', 'BcaNung01038' => 'bca', 'BcaNung01676' => 'bca', 'BcaNung02480' => 'bca', 'BcaNung07376' => 'bca', 'BolC3t16146H' => 'bol', 'BolC3t16637H' => 'bol', 'BolC4t22257H' => 'bol', 'BolC4t24728H' => 'bol', 'BolC5t34517H' => 'bol', 'BolC7t45703H' => 'bol', 'BolC8t51166H' => 'bol', 'BolC9t53038H' => 'bol', 'BolC9t60000H' => 'bol', 'BraA01t01345Z' => 'bra', 'BraA01t01346Z' => 'bra', 'BraA01t01348Z' => 'bra', 'BraA03t12347Z' => 'bra', 'BraA03t12775Z' => 'bra', 'BraA03t14439Z' => 'bra', 'BraA04t15860Z' => 'bra', 'BraA05t19511Z' => 'bra', 'BraA05t22746Z' => 'bra', 'BraA09t35767Z' => 'bra', 'BraA09t40732Z' => 'bra', 'BraA10t45233Z' => 'bra', 'C03p38720' => 'bna', 'C03p43680' => 'bna', 'C04p06350' => 'bna', 'C04p31800' => 'bna', 'C05p58680' => 'bna', 'C07p52110' => 'bna', 'C08p35760' => 'bna', 'C09p01050' => 'bna', 'C09p72600' => 'bna', 'CAN.G106.2' => 'can', 'CAN.G1482.1' => 'can', 'CAN.G324.12' => 'can', 'CAN.G388.20' => 'can', 'CAN.G412.7' => 'can', 'CAN.G694.32' => 'can', 'CAN.G92.12' => 'can', 'CANSAT11G2353' => 'cansat', 'CANSAT21G1398' => 'cansat', 'CANSAT56G2456' => 'cansat', 'CANSAT56G3031' => 'cansat', 'CANSAT56G4539' => 'cansat', 'CARHR083680' => 'chi', 'CARHR171190' => 'chi', 'CARHR209010' => 'chi', 'CARHR229680' => 'chi', 'CARHR249490' => 'chi', 'Carub.0003s0844' => 'cru', 'Carub.0005s2755' => 'cru', 'Carub.0006s0322' => 'cru', 'Carub.0006s3586' => 'cru', 'Carub.0007s1855' => 'cru', 'Ca_07808_v3' => 'car', 'Ca_09535_v3' => 'car', 'Ca_10548_v3' => 'car', 'Ca_19913_v3' => 'car', 'Ca_19916_v3' => 'car', 'Ca_19975_v3' => 'car', 'CBR_g22876' => 'cbr', 'CBR_g22879' => 'cbr', 'CBR_g38491' => 'cbr', 'CBR_g54185' => 'cbr', 'CBR_g54190' => 'cbr', 'Cc02_g11020' => 'ccan', 'Cc02_g23920' => 'ccan', 'Cc02_g39860' => 'ccan', 'Cc02_g39870' => 'ccan', 'Cc03_g06760' => 'ccan', 'Cc06_g02450' => 'ccan', 'Cc09_g09450' => 'ccan', 'CDE02G1959' => 'cde', 'CDE04G0600' => 'cde', 'CDE07G1996' => 'cde', 'CDE07G2078' => 'cde', 'CDE11G0611' => 'cde', 'Cfa001683' => 'cfa', 'Cfa001734' => 'cfa', 'Cfa001737' => 'cfa', 'Cfa003751' => 'cfa', 'Cfa012019' => 'cfa', 'Cfa017353' => 'cfa', 'Cfa017732' => 'cfa', 'Cfa022464' => 'cfa', 'Ciclev10012400m.g' => 'ccl', 'Ciclev10021242m.g' => 'ccl', 'Ciclev10021302m.g' => 'ccl', 'Ciclev10021463m.g' => 'ccl', 'Ciclev10032359m.g' => 'ccl', 'CiPaw.01G081000' => 'cil', 'CiPaw.01G262500' => 'cil', 'CiPaw.01G269800' => 'cil', 'CiPaw.02G168400' => 'cil', 'CiPaw.05G119500' => 'cil', 'CiPaw.11G147300' => 'cil', 'ClCG01G003630' => 'cla', 'ClCG05G000510' => 'cla', 'ClCG05G002300' => 'cla', 'ClCG08G007650' => 'cla', 'ClCG10G021250' => 'cla', 'COL.COLO4_06218' => 'col', 'COL.COLO4_12538' => 'col', 'COL.COLO4_14775' => 'col', 'COL.COLO4_23875' => 'col', 'Cpa.g.sc141.16' => 'cpa', 'Cpa.g.sc169.16' => 'cpa', 'Cpa.g.sc244.4' => 'cpa', 'Cpa.g.sc244.5' => 'cpa', 'Cpa.g.sc29.87' => 'cpa', 'Cpa.g.sc53.115' => 'cpa', 'Cre03.g207502' => 'cre', 'Cre06.g277000' => 'cre', 'Cre09.g394050' => 'cre', 'CsaV3_3G007680' => 'csa', 'CsaV3_3G009710' => 'csa', 'CsaV3_3G034790' => 'csa', 'CsaV3_5G003750' => 'csa', 'CsaV3_6G036620' => 'csa', 'CSS0002288' => 'camsi', 'CSS0011250' => 'camsi', 'CSS0021619' => 'camsi', 'CSS0046701' => 'camsi', 'DCAR_006420' => 'dca', 'DCAR_006865' => 'dca', 'DCAR_008558' => 'dca', 'DCAR_028754' => 'dca', 'DCAR_028755' => 'dca', 'Dinv31218' => 'din', 'Dinv32371' => 'din', 'Dinv34250' => 'din', 'Dinv37156' => 'din', 'Dinv43704' => 'din', 'Duzib093G1811' => 'dzi', 'Duzib106G1622' => 'dzi', 'Duzib114G0504' => 'dzi', 'Duzib128G0338' => 'dzi', 'Duzib128G1577' => 'dzi', 'Duzib133G0104' => 'dzi', 'Duzib133G1080' => 'dzi', 'Duzib138G0324' => 'dzi', 'Duzib138G0394' => 'dzi', 'Duzib205G0122' => 'dzi', 'Duzib268G1020' => 'dzi', 'Duzib268G1359' => 'dzi', 'ECA232G3929' => 'eca', 'ECA236G2210' => 'eca', 'ECA236G2287' => 'eca', 'ECA240G4568' => 'eca', 'ECA247G0894' => 'eca', 'EL10Ac1g00200' => 'bvu', 'EL10Ac1g00886' => 'bvu', 'EL10As1g23091' => 'bvu', 'EL10As1g23092' => 'bvu', 'Eucgr.A01284' => 'egr', 'Eucgr.A01285' => 'egr', 'Eucgr.D02456' => 'egr', 'Eucgr.E00018' => 'egr', 'Eucgr.E01439' => 'egr', 'Eucgr.G02859' => 'egr', 'FAN01G0168' => 'fan', 'FAN01G0453' => 'fan', 'FAN01G2761' => 'fan', 'FAN02G1239' => 'fan', 'FAN03G0645' => 'fan', 'FAN03G2707' => 'fan', 'FAN03G2978' => 'fan', 'FAN04G0227' => 'fan', 'FAN06G0091' => 'fan', 'FAN06G1418' => 'fan', 'FAN06G1512' => 'fan', 'FAN06G1986' => 'fan', 'FAN06G2905' => 'fan', 'FAN06G4325' => 'fan', 'FAN08G0033' => 'fan', 'FAN09G0642' => 'fan', 'FAN10G1763' => 'fan', 'FAN10G2026' => 'fan', 'FAN10G2513' => 'fan', 'FAN10G3402' => 'fan', 'FAN10G3564' => 'fan', 'FAN10G3987' => 'fan', 'FAN13G1490' => 'fan', 'FAN14G5857' => 'fan', 'FAN18G1188' => 'fan', 'FvH4_5g00750' => 'fve', 'FvH4_6g13410' => 'fve', 'FvH4_7g11740' => 'fve', 'FvH4_7g17410' => 'fve', 'FvH4_7g18860' => 'fve', 'Glyma.01G099100' => 'gma', 'Glyma.01G142300' => 'gma', 'Glyma.03G025500' => 'gma', 'Glyma.03G069700' => 'gma', 'Glyma.03G260000' => 'gma', 'Glyma.09G269800' => 'gma', 'Glyma.10G208700' => 'gma', 'Glyma.18G220400' => 'gma', 'Glyma.20G182000' => 'gma', 'Gohir.A01G221726' => 'ghi', 'Gohir.A07G134600' => 'ghi', 'Gohir.A07G146000' => 'ghi', 'Gohir.A08G173900' => 'ghi', 'Gohir.A09G194900' => 'ghi', 'Gohir.A10G204100' => 'ghi', 'Gohir.A11G080600' => 'ghi', 'Gohir.A11G327500' => 'ghi', 'Gohir.A12G101800' => 'ghi', 'Gohir.D01G211200' => 'ghi', 'Gohir.D07G139200' => 'ghi', 'Gohir.D07G152100' => 'ghi', 'Gohir.D08G192600' => 'ghi', 'Gohir.D09G189200' => 'ghi', 'Gohir.D10G212000' => 'ghi', 'Gohir.D11G085200' => 'ghi', 'Gohir.D11G346400' => 'ghi', 'Gohir.D12G104800' => 'ghi', 'Gorai.001G151300' => 'gra', 'Gorai.001G174100' => 'gra', 'Gorai.002G257000' => 'gra', 'Gorai.004G202600' => 'gra', 'Gorai.007G090900' => 'gra', 'Gorai.007G376700' => 'gra', 'Gorai.008G114100' => 'gra', 'Gorai.011G237900' => 'gra', 'GSVIVG01005450001' => 'vvi', 'GSVIVG01016232001' => 'vvi', 'GSVIVG01026157001' => 'vvi', 'GSVIVG01027419001' => 'vvi', 'GSVIVG01027631001' => 'vvi', 'GSVIVG01034143001' => 'vvi', 'HanXRQChr03g0093921' => 'han', 'HanXRQChr04g0120001' => 'han', 'HanXRQChr04g0122561' => 'han', 'HanXRQChr09g0246851' => 'han', 'HanXRQChr10g0293311' => 'han', 'HanXRQChr13g0425231' => 'han', 'HanXRQChr16g0532571' => 'han', 'Haze_09050' => 'cav', 'Haze_15715' => 'cav', 'Haze_15716' => 'cav', 'Haze_16803' => 'cav', 'Haze_16850' => 'cav', 'Hma1.2p1_0301F.1_g118655' => 'hma', 'Hma1.2p1_0309F.1_g120590' => 'hma', 'Hma1.2p1_0936F.1_g238900' => 'hma', 'Hma1.2p1_3552F.1_g336740' => 'hma', 'HPP92_003520' => 'vpl', 'HPP92_006628' => 'vpl', 'HPP92_006645' => 'vpl', 'HPP92_014669' => 'vpl', 'HPP92_015077' => 'vpl', 'Hund16742' => 'sun', 'Hund17022' => 'sun', 'Lalb_Chr02g0152131' => 'lal', 'Lalb_Chr05g0225371' => 'lal', 'Lalb_Chr07g0189841' => 'lal', 'Lalb_Chr07g0192961' => 'lal', 'Lalb_Chr12g0208221' => 'lal', 'Lalb_Chr13g0291211' => 'lal', 'Lalb_Chr13g0291781' => 'lal', 'Lalb_Chr18g0044651' => 'lal', 'Lalb_Chr21g0313731' => 'lal', 'Lj1g0022533' => 'lja', 'Lj2A18T50' => 'lonja', 'Lj2A92G93' => 'lonja', 'Lj3A965T73' => 'lonja', 'Lj3g0000673' => 'lja', 'Lj3g0002666' => 'lja', 'Lj4g0016985' => 'lja', 'Lj5g0003625' => 'lja', 'Lj7A529G36' => 'lonja', 'Lj9A569T49' => 'lonja', 'Lj9A604T63' => 'lonja', 'Lsat_1_v5_gn_3_132060' => 'lsa', 'Lsat_1_v5_gn_4_68941' => 'lsa', 'Lsat_1_v5_gn_5_95580' => 'lsa', 'Lsat_1_v5_gn_7_161' => 'lsa', 'Lsat_1_v5_gn_7_7041' => 'lsa', 'Lsat_1_v5_gn_9_33481' => 'lsa', 'Lsat_1_v5_gn_9_68260' => 'lsa', 'Manes.01G073100' => 'mes', 'Manes.01G266300' => 'mes', 'Manes.02G033300' => 'mes', 'Manes.05G017900' => 'mes', 'Manes.05G046100' => 'mes', 'Manes.08G080900' => 'mes', 'Manes.10G049400' => 'mes', 'Mapoly0009s0186' => 'mpo', 'Mapoly0036s0118' => 'mpo', 'Mapoly0101s0046' => 'mpo', 'MBI04_g30218_MAGBIO' => 'mbi', 'MBI04_g35564_MAGBIO' => 'mbi', 'MBI12_g34011_MAGBIO' => 'mbi', 'MBI14_g04655_MAGBIO' => 'mbi', 'MCO07G653' => 'mco', 'MCO10G173' => 'mco', 'MD01G1087100' => 'mdo', 'MD01G1104200' => 'mdo', 'MD02G1205100' => 'mdo', 'MD04G1079200' => 'mdo', 'MD04G1131400' => 'mdo', 'MD07G1121600' => 'mdo', 'MD07G1157300' => 'mdo', 'MD07G1171000' => 'mdo', 'MD12G1144500' => 'mdo', 'Medtr1g094610' => 'mtr', 'Medtr4g021795' => 'mtr', 'Medtr4g023760' => 'mtr', 'Medtr7g118050' => 'mtr', 'MELO3C005582.2' => 'cme', 'MELO3C005989.2' => 'cme', 'MELO3C006192.2' => 'cme', 'MELO3C009248.2' => 'cme', 'MELO3C019817.2' => 'cme', 'Migut.B01625' => 'egut', 'Migut.B01915' => 'egut', 'Migut.F01721' => 'egut', 'Migut.J00314' => 'egut', 'MSTRG.20742' => 'ama', 'MSTRG.8134' => 'ama', 'Nitab4.5_0000096g0010' => 'nta', 'Nitab4.5_0000202g0030' => 'nta', 'Nitab4.5_0000216g0370' => 'nta', 'Nitab4.5_0000457g0230' => 'nta', 'Nitab4.5_0001702g0170' => 'nta', 'Nitab4.5_0003607g0010' => 'nta', 'Nitab4.5_0004917g0020' => 'nta', 'Nitab4.5_0007059g0010' => 'nta', 'Nitab4.5_0007184g0010' => 'nta', 'Nitab4.5_0007346g0020' => 'nta', 'Nn1g00410' => 'nnu', 'Nn1g01252' => 'nnu', 'Nn2g11168' => 'nnu', 'Nn2g13403' => 'nnu', 'Nn2g13760' => 'nnu', 'Nn4g26380' => 'nnu', 'Oeu000806.2' => 'oeu', 'Oeu005788.1' => 'oeu', 'Oeu006900.3' => 'oeu', 'Oeu007797.1' => 'oeu', 'Oeu011932.1' => 'oeu', 'Oeu022739.1' => 'oeu', 'Oeu037918.1' => 'oeu', 'Oeu055490.2' => 'oeu', 'Os01g0844400' => 'osa', 'Os02g0819100' => 'osa', 'Os03g0804300' => 'osa', 'Os05g0458000' => 'osa', 'Os07g0467800' => 'osa', 'Os12g0602200' => 'osa', 'Peaxi162Scf00013g03444' => 'pax', 'Peaxi162Scf00094g01120' => 'pax', 'Peaxi162Scf00191g01211' => 'pax', 'Peaxi162Scf00238g01110' => 'pax', 'Peaxi162Scf00330g00719' => 'pax', 'Peaxi162Scf00627g00018' => 'pax', 'PGR031G2686' => 'pgr', 'PGR042G0809' => 'pgr', 'PGR142G0193' => 'pgr', 'PGSC0003DMG400011066' => 'stu', 'PGSC0003DMG400012041' => 'stu', 'PGSC0003DMG400013678' => 'stu', 'PGSC0003DMG400023477' => 'stu', 'PGSC0003DMG400025956' => 'stu', 'PGSC0003DMG401019151' => 'stu', 'Phvul.006G116400' => 'pvu', 'Phvul.007G097300' => 'pvu', 'Phvul.010G015000' => 'pvu', 'Phvul.010G083900' => 'pvu', 'Potri.001G117100' => 'ptr', 'Potri.002G147300' => 'ptr', 'Potri.003G115600' => 'ptr', 'Potri.006G087400' => 'ptr', 'Potri.010G226100' => 'ptr', 'Potri.014G069200' => 'ptr', 'Potri.014G104000' => 'ptr', 'Potri.016G100200' => 'ptr', 'Pp3c10_20450' => 'ppa', 'Pp3c1_42400' => 'ppa', 'Pp3c3_24390' => 'ppa', 'Pp3c3_2860' => 'ppa', 'PRCOL_00003193' => 'pco', 'Prupe.2G144500' => 'ppe', 'Prupe.2G195700' => 'ppe', 'Prupe.2G209800' => 'ppe', 'Prupe.5G080000' => 'ppe', 'Prupe.6G257900' => 'ppe', 'Psat3g001160' => 'psa', 'Psat6g181880' => 'psa', 'Psat7g233720' => 'psa', 'PSO063G7587' => 'pso', 'PSO339G2145' => 'pso', 'PSO339G3369' => 'pso', 'PSO478G2747' => 'pso', 'PSO513G0140' => 'pso', 'PSO782G1614' => 'pso', 'PSO782G4889' => 'pso', 'PSO782G5485' => 'pso', 'PSO801G0241' => 'pso', 'QL07p048854' => 'qlo', 'QL08p046745' => 'qlo', 'QL08p052606' => 'qlo', 'QL08p053414' => 'qlo', 'QL08p054868' => 'qlo', 'RcHm_v2.0_Chr1g0350251' => 'rch', 'RcHm_v2.0_Chr1g0360851' => 'rch', 'RcHm_v2.0_Chr1g0362791' => 'rch', 'RcHm_v2.0_Chr3g0466281' => 'rch', 'RcHm_v2.0_Chr7g0201481' => 'rch', 'Rhsim01G0148600' => 'rsi', 'Rhsim05G0194400' => 'rsi', 'Rhsim07G0000700' => 'rsi', 'Rhsim07G0000800' => 'rsi', 'Rhsim07G0027900' => 'rsi', 'Rhsim09G0149500' => 'rsi', 'RhsimUnG0186900' => 'rsi', 'Sabra01G0089900' => 'sbr', 'Sabra02G0114700' => 'sbr', 'Sabra02G0116300' => 'sbr', 'Sabra03G0080100' => 'sbr', 'Sabra08G0024300' => 'sbr', 'Sabra10G0174300' => 'sbr', 'Sabra14G0048900' => 'sbr', 'Sabra14G0076500' => 'sbr', 'SalBow5G2513' => 'sbo', 'Sc01g0002300' => 'sci', 'Sc01g0004450' => 'sci', 'Sc06g0001680' => 'sci', 'Sc23g0003580' => 'sci', 'Sed0000913' => 'sed', 'Sed0001655' => 'sed', 'Sed0007745' => 'sed', 'Sed0010951' => 'sed', 'Sed0017599' => 'sed', 'Sed0021405' => 'sed', 'Sed0022810' => 'sed', 'SEGI_07099' => 'sgi', 'SEGI_11931' => 'sgi', 'SEGI_13187' => 'sgi', 'SEGI_29958' => 'sgi', 'SEGI_36351' => 'sgi', 'SGA_v2.0_scaffold126G33770' => 'sas', 'SGA_v2.0_scaffold153G37003' => 'sas', 'SGA_v2.0_scaffold2G01359' => 'sas', 'SGA_v2.0_scaffold5G03064' => 'sas', 'SGA_v2.0_scaffold95G28903' => 'sas', 'SHI12701' => 'shi', 'SHI26410' => 'shi', 'SHI38997' => 'shi', 'SHI53759' => 'shi', 'SHI53886' => 'shi', 'SHI54714' => 'shi', 'SMO011G0041' => 'smo', 'SMO146G0251' => 'smo', 'SMO160G0004' => 'smo', 'SMO174G0057' => 'smo', 'SMO244G0089' => 'smo', 'SMO296G0011' => 'smo', 'Solyc01g091280.3' => 'sly', 'Solyc05g047610.3' => 'sly', 'Solyc05g047640.3' => 'sly', 'Solyc05g055630.3' => 'sly', 'Solyc10g018160.2' => 'sly', 'Solyc10g084820.2' => 'sly', 'Solyc10g086565.2' => 'sly', 'Sopen01g037030' => 'spe', 'Sopen05g027920' => 'spe', 'Sopen05g034070' => 'spe', 'Sopen10g007260' => 'spe', 'Sopen10g034260' => 'spe', 'Sopen10g035950' => 'spe', 'Sp3g07710' => 'spa', 'Sp4g27420' => 'spa', 'Sp5g02450' => 'spa', 'Sp6g01280' => 'spa', 'Sp6g38480' => 'spa', 'Sp7g20780' => 'spa', 'TAR374G1413' => 'tar', 'TAR623G1777' => 'tar', 'TAR629G2370' => 'tar', 'TAR633G1759' => 'tar', 'TAR636G3387' => 'tar', 'THA.LOC104802447' => 'tha', 'THA.LOC104813916' => 'tha', 'THA.LOC104816423' => 'tha', 'THA.LOC104817246' => 'tha', 'THA.LOC104825895' => 'tha', 'Thecc.01G335200' => 'tca', 'Thecc.01G377400' => 'tca', 'Thecc.03G262200' => 'tca', 'Thecc.05G036800' => 'tca', 'Thecc.10G080500' => 'tca', 'Thecc.10G080800' => 'tca', 'Thhalv10001560m.g' => 'esa', 'Thhalv10006120m.g' => 'esa', 'Thhalv10014375m.g' => 'esa', 'Thhalv10021264m.g' => 'esa', 'Thhalv10028856m.g' => 'esa', 'TPR.G1914' => 'tpr', 'TPR.G4757' => 'tpr', 'TPR.G5595' => 'tpr', 'TWI14G0952' => 'twi', 'TWI14G1307' => 'twi', 'TWI38G2143' => 'twi', 'TWI59G0826' => 'twi', 'TWI77G0527' => 'twi', 'TWI81G0150' => 'twi', 'unitig_21.g21018' => 'ugi', 'unitig_26.g9725' => 'ugi', 'unitig_744.g24653' => 'ugi', 'unitig_749.g13778' => 'ugi', 'unitig_899.g15035' => 'ugi', 'vmacro04296' => 'vma', 'vmacro04852' => 'vma', 'vmacro13404' => 'vma', 'vmacro20169' => 'vma', 'vmacro21014' => 'vma', 'VMungo0331G0237' => 'vmu', 'VMungo0331G0706' => 'vmu', 'VMungo0331G1361' => 'vmu', 'VMungo0331G1489' => 'vmu', 'VMungo0540G1037' => 'vmu', 'VMungo0720G2487' => 'vmu', 'VMungo0720G2721' => 'vmu', 'Zm00001eb086860' => 'zma', 'Zm00001eb104760' => 'zma', 'Zm00001eb148220' => 'zma', 'Zm00001eb259030' => 'zma', 'Zm00001eb289590' => 'zma', 'Zm00001eb420150' => 'zma' ), 'gf_id' => 'HOM05D000968', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000968' ), 'data_identifier' => 'HOM05D000968', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000968', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p31690' => 'bna', 'A03p36040' => 'bna', 'A03p53730' => 'bna', 'A04p01410' => 'bna', 'A05p05420' => 'bna', 'A05p39630' => 'bna', 'A05p39640' => 'bna', 'A09p00970' => 'bna', 'A09p53060' => 'bna', 'A10p31890' => 'bna', 'Aa31LG10G15040' => 'aar', 'Aa31LG1G21090' => 'aar', 'Aa31LG1G26900' => 'aar', 'Aa31LG3G1820' => 'aar', 'Aa31LG5G1100' => 'aar', 'Aa31LG6G4740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2265' => 'aag', 'Actinidia07998' => 'ach', 'Actinidia11266' => 'ach', 'Actinidia12682' => 'ach', 'Actinidia26479' => 'ach', 'Actinidia31406' => 'ach', 'Actinidia32437' => 'ach', 'Actinidia38862' => 'ach', 'Ah.05g174230' => 'amhyb', 'Ah.05g179070' => 'amhyb', 'Ah.05g179090' => 'amhyb', 'Ah.12g059950' => 'amhyb', 'AL3G20480' => 'aly', 'AL4G44520' => 'aly', 'AL5G43110' => 'aly', 'AL6G13890' => 'aly', 'AL6G52620' => 'aly', 'AL7G30830' => 'aly', 'Aqoxy1G00899' => 'aox', 'Aqoxy5G04333' => 'aox', 'Aqoxy7G00641' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3IZ0NN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4EF6AW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W9P8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79GA3M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C43NQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFCU6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G95YVJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCHK29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LU1UG8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX91RN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGB4B1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8DA0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9H7JI' => 'arhy', 'AT3G09320' => 'ath', 'AT3G60800' => 'ath', 'AT4G00840' => 'ath', 'AT4G22750' => 'ath', 'AT5G04270' => 'ath', 'ATR0090G003' => 'atr', 'ATR0559G349' => 'atr', 'ATR0680G261' => 'atr', 'ATR0810G048' => 'atr', 'Atru.chr12.831' => 'acertr', 'Atru.chr5.303' => 'acertr', 'Atru.chr5.748' => 'acertr', 'Atru.chr8.1999' => 'acertr', 'Atru.chr9.1436' => 'acertr', 'AUR62004211' => 'cqu', 'AUR62004548' => 'cqu', 'AUR62013637' => 'cqu', 'AUR62022662' => 'cqu', 'AUR62025777' => 'cqu', 'AUR62042386' => 'cqu', 'BcaB01g02310' => 'bca', 'BcaB01g06062' => 'bca', 'BcaB02g08975' => 'bca', 'BcaB02g08980' => 'bca', 'BcaC01g04228' => 'bca', 'BcaC01g06830' => 'bca', 'BcaC02g10186' => 'bca', 'BcaC02g12214' => 'bca', 'BcaC04g24101' => 'bca', 'BcaC05g29520' => 'bca', 'BcaC05g29661' => 'bca', 'BcaC06g32130' => 'bca', 'BcaC06g32131' => 'bca', 'BcaC07g40601' => 'bca', 'BcaC07g42641' => 'bca', 'BcaNung01038' => 'bca', 'BcaNung01676' => 'bca', 'BcaNung02480' => 'bca', 'BcaNung07376' => 'bca', 'BolC3t16146H' => 'bol', 'BolC3t16637H' => 'bol', 'BolC4t22257H' => 'bol', 'BolC4t24728H' => 'bol', 'BolC5t34517H' => 'bol', 'BolC7t45703H' => 'bol', 'BolC8t51166H' => 'bol', 'BolC9t53038H' => 'bol', 'BolC9t60000H' => 'bol', 'BraA01t01345Z' => 'bra', 'BraA01t01346Z' => 'bra', 'BraA01t01348Z' => 'bra', 'BraA03t12347Z' => 'bra', 'BraA03t12775Z' => 'bra', 'BraA03t14439Z' => 'bra', 'BraA04t15860Z' => 'bra', 'BraA05t19511Z' => 'bra', 'BraA05t22746Z' => 'bra', 'BraA09t35767Z' => 'bra', 'BraA09t40732Z' => 'bra', 'BraA10t45233Z' => 'bra', 'C03p38720' => 'bna', 'C03p43680' => 'bna', 'C04p06350' => 'bna', 'C04p31800' => 'bna', 'C05p58680' => 'bna', 'C07p52110' => 'bna', 'C08p35760' => 'bna', 'C09p01050' => 'bna', 'C09p72600' => 'bna', 'CAN.G106.2' => 'can', 'CAN.G1482.1' => 'can', 'CAN.G324.12' => 'can', 'CAN.G388.20' => 'can', 'CAN.G412.7' => 'can', 'CAN.G694.32' => 'can', 'CAN.G92.12' => 'can', 'CANSAT11G2353' => 'cansat', 'CANSAT21G1398' => 'cansat', 'CANSAT56G2456' => 'cansat', 'CANSAT56G3031' => 'cansat', 'CANSAT56G4539' => 'cansat', 'CARHR083680' => 'chi', 'CARHR171190' => 'chi', 'CARHR209010' => 'chi', 'CARHR229680' => 'chi', 'CARHR249490' => 'chi', 'Carub.0003s0844' => 'cru', 'Carub.0005s2755' => 'cru', 'Carub.0006s0322' => 'cru', 'Carub.0006s3586' => 'cru', 'Carub.0007s1855' => 'cru', 'Ca_07808_v3' => 'car', 'Ca_09535_v3' => 'car', 'Ca_10548_v3' => 'car', 'Ca_19913_v3' => 'car', 'Ca_19916_v3' => 'car', 'Ca_19975_v3' => 'car', 'CBR_g22876' => 'cbr', 'CBR_g22879' => 'cbr', 'CBR_g38491' => 'cbr', 'CBR_g54185' => 'cbr', 'CBR_g54190' => 'cbr', 'Cc02_g11020' => 'ccan', 'Cc02_g23920' => 'ccan', 'Cc02_g39860' => 'ccan', 'Cc02_g39870' => 'ccan', 'Cc03_g06760' => 'ccan', 'Cc06_g02450' => 'ccan', 'Cc09_g09450' => 'ccan', 'CDE02G1959' => 'cde', 'CDE04G0600' => 'cde', 'CDE07G1996' => 'cde', 'CDE07G2078' => 'cde', 'CDE11G0611' => 'cde', 'Cfa001683' => 'cfa', 'Cfa001734' => 'cfa', 'Cfa001737' => 'cfa', 'Cfa003751' => 'cfa', 'Cfa012019' => 'cfa', 'Cfa017353' => 'cfa', 'Cfa017732' => 'cfa', 'Cfa022464' => 'cfa', 'Ciclev10012400m.g' => 'ccl', 'Ciclev10021242m.g' => 'ccl', 'Ciclev10021302m.g' => 'ccl', 'Ciclev10021463m.g' => 'ccl', 'Ciclev10032359m.g' => 'ccl', 'CiPaw.01G081000' => 'cil', 'CiPaw.01G262500' => 'cil', 'CiPaw.01G269800' => 'cil', 'CiPaw.02G168400' => 'cil', 'CiPaw.05G119500' => 'cil', 'CiPaw.11G147300' => 'cil', 'ClCG01G003630' => 'cla', 'ClCG05G000510' => 'cla', 'ClCG05G002300' => 'cla', 'ClCG08G007650' => 'cla', 'ClCG10G021250' => 'cla', 'COL.COLO4_06218' => 'col', 'COL.COLO4_12538' => 'col', 'COL.COLO4_14775' => 'col', 'COL.COLO4_23875' => 'col', 'Cpa.g.sc141.16' => 'cpa', 'Cpa.g.sc169.16' => 'cpa', 'Cpa.g.sc244.4' => 'cpa', 'Cpa.g.sc244.5' => 'cpa', 'Cpa.g.sc29.87' => 'cpa', 'Cpa.g.sc53.115' => 'cpa', 'Cre03.g207502' => 'cre', 'Cre06.g277000' => 'cre', 'Cre09.g394050' => 'cre', 'CsaV3_3G007680' => 'csa', 'CsaV3_3G009710' => 'csa', 'CsaV3_3G034790' => 'csa', 'CsaV3_5G003750' => 'csa', 'CsaV3_6G036620' => 'csa', 'CSS0002288' => 'camsi', 'CSS0011250' => 'camsi', 'CSS0021619' => 'camsi', 'CSS0046701' => 'camsi', 'DCAR_006420' => 'dca', 'DCAR_006865' => 'dca', 'DCAR_008558' => 'dca', 'DCAR_028754' => 'dca', 'DCAR_028755' => 'dca', 'Dinv31218' => 'din', 'Dinv32371' => 'din', 'Dinv34250' => 'din', 'Dinv37156' => 'din', 'Dinv43704' => 'din', 'Duzib093G1811' => 'dzi', 'Duzib106G1622' => 'dzi', 'Duzib114G0504' => 'dzi', 'Duzib128G0338' => 'dzi', 'Duzib128G1577' => 'dzi', 'Duzib133G0104' => 'dzi', 'Duzib133G1080' => 'dzi', 'Duzib138G0324' => 'dzi', 'Duzib138G0394' => 'dzi', 'Duzib205G0122' => 'dzi', 'Duzib268G1020' => 'dzi', 'Duzib268G1359' => 'dzi', 'ECA232G3929' => 'eca', 'ECA236G2210' => 'eca', 'ECA236G2287' => 'eca', 'ECA240G4568' => 'eca', 'ECA247G0894' => 'eca', 'EL10Ac1g00200' => 'bvu', 'EL10Ac1g00886' => 'bvu', 'EL10As1g23091' => 'bvu', 'EL10As1g23092' => 'bvu', 'Eucgr.A01284' => 'egr', 'Eucgr.A01285' => 'egr', 'Eucgr.D02456' => 'egr', 'Eucgr.E00018' => 'egr', 'Eucgr.E01439' => 'egr', 'Eucgr.G02859' => 'egr', 'FAN01G0168' => 'fan', 'FAN01G0453' => 'fan', 'FAN01G2761' => 'fan', 'FAN02G1239' => 'fan', 'FAN03G0645' => 'fan', 'FAN03G2707' => 'fan', 'FAN03G2978' => 'fan', 'FAN04G0227' => 'fan', 'FAN06G0091' => 'fan', 'FAN06G1418' => 'fan', 'FAN06G1512' => 'fan', 'FAN06G1986' => 'fan', 'FAN06G2905' => 'fan', 'FAN06G4325' => 'fan', 'FAN08G0033' => 'fan', 'FAN09G0642' => 'fan', 'FAN10G1763' => 'fan', 'FAN10G2026' => 'fan', 'FAN10G2513' => 'fan', 'FAN10G3402' => 'fan', 'FAN10G3564' => 'fan', 'FAN10G3987' => 'fan', 'FAN13G1490' => 'fan', 'FAN14G5857' => 'fan', 'FAN18G1188' => 'fan', 'FvH4_5g00750' => 'fve', 'FvH4_6g13410' => 'fve', 'FvH4_7g11740' => 'fve', 'FvH4_7g17410' => 'fve', 'FvH4_7g18860' => 'fve', 'Glyma.01G099100' => 'gma', 'Glyma.01G142300' => 'gma', 'Glyma.03G025500' => 'gma', 'Glyma.03G069700' => 'gma', 'Glyma.03G260000' => 'gma', 'Glyma.09G269800' => 'gma', 'Glyma.10G208700' => 'gma', 'Glyma.18G220400' => 'gma', 'Glyma.20G182000' => 'gma', 'Gohir.A01G221726' => 'ghi', 'Gohir.A07G134600' => 'ghi', 'Gohir.A07G146000' => 'ghi', 'Gohir.A08G173900' => 'ghi', 'Gohir.A09G194900' => 'ghi', 'Gohir.A10G204100' => 'ghi', 'Gohir.A11G080600' => 'ghi', 'Gohir.A11G327500' => 'ghi', 'Gohir.A12G101800' => 'ghi', 'Gohir.D01G211200' => 'ghi', 'Gohir.D07G139200' => 'ghi', 'Gohir.D07G152100' => 'ghi', 'Gohir.D08G192600' => 'ghi', 'Gohir.D09G189200' => 'ghi', 'Gohir.D10G212000' => 'ghi', 'Gohir.D11G085200' => 'ghi', 'Gohir.D11G346400' => 'ghi', 'Gohir.D12G104800' => 'ghi', 'Gorai.001G151300' => 'gra', 'Gorai.001G174100' => 'gra', 'Gorai.002G257000' => 'gra', 'Gorai.004G202600' => 'gra', 'Gorai.007G090900' => 'gra', 'Gorai.007G376700' => 'gra', 'Gorai.008G114100' => 'gra', 'Gorai.011G237900' => 'gra', 'GSVIVG01005450001' => 'vvi', 'GSVIVG01016232001' => 'vvi', 'GSVIVG01026157001' => 'vvi', 'GSVIVG01027419001' => 'vvi', 'GSVIVG01027631001' => 'vvi', 'GSVIVG01034143001' => 'vvi', 'HanXRQChr03g0093921' => 'han', 'HanXRQChr04g0120001' => 'han', 'HanXRQChr04g0122561' => 'han', 'HanXRQChr09g0246851' => 'han', 'HanXRQChr10g0293311' => 'han', 'HanXRQChr13g0425231' => 'han', 'HanXRQChr16g0532571' => 'han', 'Haze_09050' => 'cav', 'Haze_15715' => 'cav', 'Haze_15716' => 'cav', 'Haze_16803' => 'cav', 'Haze_16850' => 'cav', 'Hma1.2p1_0301F.1_g118655' => 'hma', 'Hma1.2p1_0309F.1_g120590' => 'hma', 'Hma1.2p1_0936F.1_g238900' => 'hma', 'Hma1.2p1_3552F.1_g336740' => 'hma', 'HPP92_003520' => 'vpl', 'HPP92_006628' => 'vpl', 'HPP92_006645' => 'vpl', 'HPP92_014669' => 'vpl', 'HPP92_015077' => 'vpl', 'Hund16742' => 'sun', 'Hund17022' => 'sun', 'Lalb_Chr02g0152131' => 'lal', 'Lalb_Chr05g0225371' => 'lal', 'Lalb_Chr07g0189841' => 'lal', 'Lalb_Chr07g0192961' => 'lal', 'Lalb_Chr12g0208221' => 'lal', 'Lalb_Chr13g0291211' => 'lal', 'Lalb_Chr13g0291781' => 'lal', 'Lalb_Chr18g0044651' => 'lal', 'Lalb_Chr21g0313731' => 'lal', 'Lj1g0022533' => 'lja', 'Lj2A18T50' => 'lonja', 'Lj2A92G93' => 'lonja', 'Lj3A965T73' => 'lonja', 'Lj3g0000673' => 'lja', 'Lj3g0002666' => 'lja', 'Lj4g0016985' => 'lja', 'Lj5g0003625' => 'lja', 'Lj7A529G36' => 'lonja', 'Lj9A569T49' => 'lonja', 'Lj9A604T63' => 'lonja', 'Lsat_1_v5_gn_3_132060' => 'lsa', 'Lsat_1_v5_gn_4_68941' => 'lsa', 'Lsat_1_v5_gn_5_95580' => 'lsa', 'Lsat_1_v5_gn_7_161' => 'lsa', 'Lsat_1_v5_gn_7_7041' => 'lsa', 'Lsat_1_v5_gn_9_33481' => 'lsa', 'Lsat_1_v5_gn_9_68260' => 'lsa', 'Manes.01G073100' => 'mes', 'Manes.01G266300' => 'mes', 'Manes.02G033300' => 'mes', 'Manes.05G017900' => 'mes', 'Manes.05G046100' => 'mes', 'Manes.08G080900' => 'mes', 'Manes.10G049400' => 'mes', 'Mapoly0009s0186' => 'mpo', 'Mapoly0036s0118' => 'mpo', 'Mapoly0101s0046' => 'mpo', 'MBI04_g30218_MAGBIO' => 'mbi', 'MBI04_g35564_MAGBIO' => 'mbi', 'MBI12_g34011_MAGBIO' => 'mbi', 'MBI14_g04655_MAGBIO' => 'mbi', 'MCO07G653' => 'mco', 'MCO10G173' => 'mco', 'MD01G1087100' => 'mdo', 'MD01G1104200' => 'mdo', 'MD02G1205100' => 'mdo', 'MD04G1079200' => 'mdo', 'MD04G1131400' => 'mdo', 'MD07G1121600' => 'mdo', 'MD07G1157300' => 'mdo', 'MD07G1171000' => 'mdo', 'MD12G1144500' => 'mdo', 'Medtr1g094610' => 'mtr', 'Medtr4g021795' => 'mtr', 'Medtr4g023760' => 'mtr', 'Medtr7g118050' => 'mtr', 'MELO3C005582.2' => 'cme', 'MELO3C005989.2' => 'cme', 'MELO3C006192.2' => 'cme', 'MELO3C009248.2' => 'cme', 'MELO3C019817.2' => 'cme', 'Migut.B01625' => 'egut', 'Migut.B01915' => 'egut', 'Migut.F01721' => 'egut', 'Migut.J00314' => 'egut', 'MSTRG.20742' => 'ama', 'MSTRG.8134' => 'ama', 'Nitab4.5_0000096g0010' => 'nta', 'Nitab4.5_0000202g0030' => 'nta', 'Nitab4.5_0000216g0370' => 'nta', 'Nitab4.5_0000457g0230' => 'nta', 'Nitab4.5_0001702g0170' => 'nta', 'Nitab4.5_0003607g0010' => 'nta', 'Nitab4.5_0004917g0020' => 'nta', 'Nitab4.5_0007059g0010' => 'nta', 'Nitab4.5_0007184g0010' => 'nta', 'Nitab4.5_0007346g0020' => 'nta', 'Nn1g00410' => 'nnu', 'Nn1g01252' => 'nnu', 'Nn2g11168' => 'nnu', 'Nn2g13403' => 'nnu', 'Nn2g13760' => 'nnu', 'Nn4g26380' => 'nnu', 'Oeu000806.2' => 'oeu', 'Oeu005788.1' => 'oeu', 'Oeu006900.3' => 'oeu', 'Oeu007797.1' => 'oeu', 'Oeu011932.1' => 'oeu', 'Oeu022739.1' => 'oeu', 'Oeu037918.1' => 'oeu', 'Oeu055490.2' => 'oeu', 'Os01g0844400' => 'osa', 'Os02g0819100' => 'osa', 'Os03g0804300' => 'osa', 'Os05g0458000' => 'osa', 'Os07g0467800' => 'osa', 'Os12g0602200' => 'osa', 'Peaxi162Scf00013g03444' => 'pax', 'Peaxi162Scf00094g01120' => 'pax', 'Peaxi162Scf00191g01211' => 'pax', 'Peaxi162Scf00238g01110' => 'pax', 'Peaxi162Scf00330g00719' => 'pax', 'Peaxi162Scf00627g00018' => 'pax', 'PGR031G2686' => 'pgr', 'PGR042G0809' => 'pgr', 'PGR142G0193' => 'pgr', 'PGSC0003DMG400011066' => 'stu', 'PGSC0003DMG400012041' => 'stu', 'PGSC0003DMG400013678' => 'stu', 'PGSC0003DMG400023477' => 'stu', 'PGSC0003DMG400025956' => 'stu', 'PGSC0003DMG401019151' => 'stu', 'Phvul.006G116400' => 'pvu', 'Phvul.007G097300' => 'pvu', 'Phvul.010G015000' => 'pvu', 'Phvul.010G083900' => 'pvu', 'Potri.001G117100' => 'ptr', 'Potri.002G147300' => 'ptr', 'Potri.003G115600' => 'ptr', 'Potri.006G087400' => 'ptr', 'Potri.010G226100' => 'ptr', 'Potri.014G069200' => 'ptr', 'Potri.014G104000' => 'ptr', 'Potri.016G100200' => 'ptr', 'Pp3c10_20450' => 'ppa', 'Pp3c1_42400' => 'ppa', 'Pp3c3_24390' => 'ppa', 'Pp3c3_2860' => 'ppa', 'PRCOL_00003193' => 'pco', 'Prupe.2G144500' => 'ppe', 'Prupe.2G195700' => 'ppe', 'Prupe.2G209800' => 'ppe', 'Prupe.5G080000' => 'ppe', 'Prupe.6G257900' => 'ppe', 'Psat3g001160' => 'psa', 'Psat6g181880' => 'psa', 'Psat7g233720' => 'psa', 'PSO063G7587' => 'pso', 'PSO339G2145' => 'pso', 'PSO339G3369' => 'pso', 'PSO478G2747' => 'pso', 'PSO513G0140' => 'pso', 'PSO782G1614' => 'pso', 'PSO782G4889' => 'pso', 'PSO782G5485' => 'pso', 'PSO801G0241' => 'pso', 'QL07p048854' => 'qlo', 'QL08p046745' => 'qlo', 'QL08p052606' => 'qlo', 'QL08p053414' => 'qlo', 'QL08p054868' => 'qlo', 'RcHm_v2.0_Chr1g0350251' => 'rch', 'RcHm_v2.0_Chr1g0360851' => 'rch', 'RcHm_v2.0_Chr1g0362791' => 'rch', 'RcHm_v2.0_Chr3g0466281' => 'rch', 'RcHm_v2.0_Chr7g0201481' => 'rch', 'Rhsim01G0148600' => 'rsi', 'Rhsim05G0194400' => 'rsi', 'Rhsim07G0000700' => 'rsi', 'Rhsim07G0000800' => 'rsi', 'Rhsim07G0027900' => 'rsi', 'Rhsim09G0149500' => 'rsi', 'RhsimUnG0186900' => 'rsi', 'Sabra01G0089900' => 'sbr', 'Sabra02G0114700' => 'sbr', 'Sabra02G0116300' => 'sbr', 'Sabra03G0080100' => 'sbr', 'Sabra08G0024300' => 'sbr', 'Sabra10G0174300' => 'sbr', 'Sabra14G0048900' => 'sbr', 'Sabra14G0076500' => 'sbr', 'SalBow5G2513' => 'sbo', 'Sc01g0002300' => 'sci', 'Sc01g0004450' => 'sci', 'Sc06g0001680' => 'sci', 'Sc23g0003580' => 'sci', 'Sed0000913' => 'sed', 'Sed0001655' => 'sed', 'Sed0007745' => 'sed', 'Sed0010951' => 'sed', 'Sed0017599' => 'sed', 'Sed0021405' => 'sed', 'Sed0022810' => 'sed', 'SEGI_07099' => 'sgi', 'SEGI_11931' => 'sgi', 'SEGI_13187' => 'sgi', 'SEGI_29958' => 'sgi', 'SEGI_36351' => 'sgi', 'SGA_v2.0_scaffold126G33770' => 'sas', 'SGA_v2.0_scaffold153G37003' => 'sas', 'SGA_v2.0_scaffold2G01359' => 'sas', 'SGA_v2.0_scaffold5G03064' => 'sas', 'SGA_v2.0_scaffold95G28903' => 'sas', 'SHI12701' => 'shi', 'SHI26410' => 'shi', 'SHI38997' => 'shi', 'SHI53759' => 'shi', 'SHI53886' => 'shi', 'SHI54714' => 'shi', 'SMO011G0041' => 'smo', 'SMO146G0251' => 'smo', 'SMO160G0004' => 'smo', 'SMO174G0057' => 'smo', 'SMO244G0089' => 'smo', 'SMO296G0011' => 'smo', 'Solyc01g091280.3' => 'sly', 'Solyc05g047610.3' => 'sly', 'Solyc05g047640.3' => 'sly', 'Solyc05g055630.3' => 'sly', 'Solyc10g018160.2' => 'sly', 'Solyc10g084820.2' => 'sly', 'Solyc10g086565.2' => 'sly', 'Sopen01g037030' => 'spe', 'Sopen05g027920' => 'spe', 'Sopen05g034070' => 'spe', 'Sopen10g007260' => 'spe', 'Sopen10g034260' => 'spe', 'Sopen10g035950' => 'spe', 'Sp3g07710' => 'spa', 'Sp4g27420' => 'spa', 'Sp5g02450' => 'spa', 'Sp6g01280' => 'spa', 'Sp6g38480' => 'spa', 'Sp7g20780' => 'spa', 'TAR374G1413' => 'tar', 'TAR623G1777' => 'tar', 'TAR629G2370' => 'tar', 'TAR633G1759' => 'tar', 'TAR636G3387' => 'tar', 'THA.LOC104802447' => 'tha', 'THA.LOC104813916' => 'tha', 'THA.LOC104816423' => 'tha', 'THA.LOC104817246' => 'tha', 'THA.LOC104825895' => 'tha', 'Thecc.01G335200' => 'tca', 'Thecc.01G377400' => 'tca', 'Thecc.03G262200' => 'tca', 'Thecc.05G036800' => 'tca', 'Thecc.10G080500' => 'tca', 'Thecc.10G080800' => 'tca', 'Thhalv10001560m.g' => 'esa', 'Thhalv10006120m.g' => 'esa', 'Thhalv10014375m.g' => 'esa', 'Thhalv10021264m.g' => 'esa', 'Thhalv10028856m.g' => 'esa', 'TPR.G1914' => 'tpr', 'TPR.G4757' => 'tpr', 'TPR.G5595' => 'tpr', 'TWI14G0952' => 'twi', 'TWI14G1307' => 'twi', 'TWI38G2143' => 'twi', 'TWI59G0826' => 'twi', 'TWI77G0527' => 'twi', 'TWI81G0150' => 'twi', 'unitig_21.g21018' => 'ugi', 'unitig_26.g9725' => 'ugi', 'unitig_744.g24653' => 'ugi', 'unitig_749.g13778' => 'ugi', 'unitig_899.g15035' => 'ugi', 'vmacro04296' => 'vma', 'vmacro04852' => 'vma', 'vmacro13404' => 'vma', 'vmacro20169' => 'vma', 'vmacro21014' => 'vma', 'VMungo0331G0237' => 'vmu', 'VMungo0331G0706' => 'vmu', 'VMungo0331G1361' => 'vmu', 'VMungo0331G1489' => 'vmu', 'VMungo0540G1037' => 'vmu', 'VMungo0720G2487' => 'vmu', 'VMungo0720G2721' => 'vmu', 'Zm00001eb086860' => 'zma', 'Zm00001eb104760' => 'zma', 'Zm00001eb148220' => 'zma', 'Zm00001eb259030' => 'zma', 'Zm00001eb289590' => 'zma', 'Zm00001eb420150' => 'zma' ) $gf_id = 'HOM05D000968' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000968' ) $data_identifier = 'HOM05D000968' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 19, 'bol' => (int) 9, 'bra' => (int) 12, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 5, 'ccan' => (int) 7, 'cde' => (int) 5, 'cfa' => (int) 8, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 4, 'dca' => (int) 5, 'din' => (int) 5, 'dzi' => (int) 12, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 25, 'fve' => (int) 5, 'gma' => (int) 9, 'ghi' => (int) 18, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 7, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 5, 'sun' => (int) 2, 'lal' => (int) 9, 'lja' => (int) 5, 'lonja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 9, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 2, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 3, 'stu' => (int) 6, 'pvu' => (int) 4, 'ptr' => (int) 8, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 3, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 1, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 5, 'sas' => (int) 5, 'shi' => (int) 6, 'smo' => (int) 6, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 3, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420150' $species_info = array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ) $local_species = 'pgr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000968', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p31690' => 'bna', 'A03p36040' => 'bna', 'A03p53730' => 'bna', 'A04p01410' => 'bna', 'A05p05420' => 'bna', 'A05p39630' => 'bna', 'A05p39640' => 'bna', 'A09p00970' => 'bna', 'A09p53060' => 'bna', 'A10p31890' => 'bna', 'Aa31LG10G15040' => 'aar', 'Aa31LG1G21090' => 'aar', 'Aa31LG1G26900' => 'aar', 'Aa31LG3G1820' => 'aar', 'Aa31LG5G1100' => 'aar', 'Aa31LG6G4740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2265' => 'aag', 'Actinidia07998' => 'ach', 'Actinidia11266' => 'ach', 'Actinidia12682' => 'ach', 'Actinidia26479' => 'ach', 'Actinidia31406' => 'ach', 'Actinidia32437' => 'ach', 'Actinidia38862' => 'ach', 'Ah.05g174230' => 'amhyb', 'Ah.05g179070' => 'amhyb', 'Ah.05g179090' => 'amhyb', 'Ah.12g059950' => 'amhyb', 'AL3G20480' => 'aly', 'AL4G44520' => 'aly', 'AL5G43110' => 'aly', 'AL6G13890' => 'aly', 'AL6G52620' => 'aly', 'AL7G30830' => 'aly', 'Aqoxy1G00899' => 'aox', 'Aqoxy5G04333' => 'aox', 'Aqoxy7G00641' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3IZ0NN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4EF6AW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W9P8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79GA3M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C43NQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFCU6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G95YVJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCHK29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LU1UG8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX91RN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGB4B1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8DA0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9H7JI' => 'arhy', 'AT3G09320' => 'ath', 'AT3G60800' => 'ath', 'AT4G00840' => 'ath', 'AT4G22750' => 'ath', 'AT5G04270' => 'ath', 'ATR0090G003' => 'atr', 'ATR0559G349' => 'atr', 'ATR0680G261' => 'atr', 'ATR0810G048' => 'atr', 'Atru.chr12.831' => 'acertr', 'Atru.chr5.303' => 'acertr', 'Atru.chr5.748' => 'acertr', 'Atru.chr8.1999' => 'acertr', 'Atru.chr9.1436' => 'acertr', 'AUR62004211' => 'cqu', 'AUR62004548' => 'cqu', 'AUR62013637' => 'cqu', 'AUR62022662' => 'cqu', 'AUR62025777' => 'cqu', 'AUR62042386' => 'cqu', 'BcaB01g02310' => 'bca', 'BcaB01g06062' => 'bca', 'BcaB02g08975' => 'bca', 'BcaB02g08980' => 'bca', 'BcaC01g04228' => 'bca', 'BcaC01g06830' => 'bca', 'BcaC02g10186' => 'bca', 'BcaC02g12214' => 'bca', 'BcaC04g24101' => 'bca', 'BcaC05g29520' => 'bca', 'BcaC05g29661' => 'bca', 'BcaC06g32130' => 'bca', 'BcaC06g32131' => 'bca', 'BcaC07g40601' => 'bca', 'BcaC07g42641' => 'bca', 'BcaNung01038' => 'bca', 'BcaNung01676' => 'bca', 'BcaNung02480' => 'bca', 'BcaNung07376' => 'bca', 'BolC3t16146H' => 'bol', 'BolC3t16637H' => 'bol', 'BolC4t22257H' => 'bol', 'BolC4t24728H' => 'bol', 'BolC5t34517H' => 'bol', 'BolC7t45703H' => 'bol', 'BolC8t51166H' => 'bol', 'BolC9t53038H' => 'bol', 'BolC9t60000H' => 'bol', 'BraA01t01345Z' => 'bra', 'BraA01t01346Z' => 'bra', 'BraA01t01348Z' => 'bra', 'BraA03t12347Z' => 'bra', 'BraA03t12775Z' => 'bra', 'BraA03t14439Z' => 'bra', 'BraA04t15860Z' => 'bra', 'BraA05t19511Z' => 'bra', 'BraA05t22746Z' => 'bra', 'BraA09t35767Z' => 'bra', 'BraA09t40732Z' => 'bra', 'BraA10t45233Z' => 'bra', 'C03p38720' => 'bna', 'C03p43680' => 'bna', 'C04p06350' => 'bna', 'C04p31800' => 'bna', 'C05p58680' => 'bna', 'C07p52110' => 'bna', 'C08p35760' => 'bna', 'C09p01050' => 'bna', 'C09p72600' => 'bna', 'CAN.G106.2' => 'can', 'CAN.G1482.1' => 'can', 'CAN.G324.12' => 'can', 'CAN.G388.20' => 'can', 'CAN.G412.7' => 'can', 'CAN.G694.32' => 'can', 'CAN.G92.12' => 'can', 'CANSAT11G2353' => 'cansat', 'CANSAT21G1398' => 'cansat', 'CANSAT56G2456' => 'cansat', 'CANSAT56G3031' => 'cansat', 'CANSAT56G4539' => 'cansat', 'CARHR083680' => 'chi', 'CARHR171190' => 'chi', 'CARHR209010' => 'chi', 'CARHR229680' => 'chi', 'CARHR249490' => 'chi', 'Carub.0003s0844' => 'cru', 'Carub.0005s2755' => 'cru', 'Carub.0006s0322' => 'cru', 'Carub.0006s3586' => 'cru', 'Carub.0007s1855' => 'cru', 'Ca_07808_v3' => 'car', 'Ca_09535_v3' => 'car', 'Ca_10548_v3' => 'car', 'Ca_19913_v3' => 'car', 'Ca_19916_v3' => 'car', 'Ca_19975_v3' => 'car', 'CBR_g22876' => 'cbr', 'CBR_g22879' => 'cbr', 'CBR_g38491' => 'cbr', 'CBR_g54185' => 'cbr', 'CBR_g54190' => 'cbr', 'Cc02_g11020' => 'ccan', 'Cc02_g23920' => 'ccan', 'Cc02_g39860' => 'ccan', 'Cc02_g39870' => 'ccan', 'Cc03_g06760' => 'ccan', 'Cc06_g02450' => 'ccan', 'Cc09_g09450' => 'ccan', 'CDE02G1959' => 'cde', 'CDE04G0600' => 'cde', 'CDE07G1996' => 'cde', 'CDE07G2078' => 'cde', 'CDE11G0611' => 'cde', 'Cfa001683' => 'cfa', 'Cfa001734' => 'cfa', 'Cfa001737' => 'cfa', 'Cfa003751' => 'cfa', 'Cfa012019' => 'cfa', 'Cfa017353' => 'cfa', 'Cfa017732' => 'cfa', 'Cfa022464' => 'cfa', 'Ciclev10012400m.g' => 'ccl', 'Ciclev10021242m.g' => 'ccl', 'Ciclev10021302m.g' => 'ccl', 'Ciclev10021463m.g' => 'ccl', 'Ciclev10032359m.g' => 'ccl', 'CiPaw.01G081000' => 'cil', 'CiPaw.01G262500' => 'cil', 'CiPaw.01G269800' => 'cil', 'CiPaw.02G168400' => 'cil', 'CiPaw.05G119500' => 'cil', 'CiPaw.11G147300' => 'cil', 'ClCG01G003630' => 'cla', 'ClCG05G000510' => 'cla', 'ClCG05G002300' => 'cla', 'ClCG08G007650' => 'cla', 'ClCG10G021250' => 'cla', 'COL.COLO4_06218' => 'col', 'COL.COLO4_12538' => 'col', 'COL.COLO4_14775' => 'col', 'COL.COLO4_23875' => 'col', 'Cpa.g.sc141.16' => 'cpa', 'Cpa.g.sc169.16' => 'cpa', 'Cpa.g.sc244.4' => 'cpa', 'Cpa.g.sc244.5' => 'cpa', 'Cpa.g.sc29.87' => 'cpa', 'Cpa.g.sc53.115' => 'cpa', 'Cre03.g207502' => 'cre', 'Cre06.g277000' => 'cre', 'Cre09.g394050' => 'cre', 'CsaV3_3G007680' => 'csa', 'CsaV3_3G009710' => 'csa', 'CsaV3_3G034790' => 'csa', 'CsaV3_5G003750' => 'csa', 'CsaV3_6G036620' => 'csa', 'CSS0002288' => 'camsi', 'CSS0011250' => 'camsi', 'CSS0021619' => 'camsi', 'CSS0046701' => 'camsi', 'DCAR_006420' => 'dca', 'DCAR_006865' => 'dca', 'DCAR_008558' => 'dca', 'DCAR_028754' => 'dca', 'DCAR_028755' => 'dca', 'Dinv31218' => 'din', 'Dinv32371' => 'din', 'Dinv34250' => 'din', 'Dinv37156' => 'din', 'Dinv43704' => 'din', 'Duzib093G1811' => 'dzi', 'Duzib106G1622' => 'dzi', 'Duzib114G0504' => 'dzi', 'Duzib128G0338' => 'dzi', 'Duzib128G1577' => 'dzi', 'Duzib133G0104' => 'dzi', 'Duzib133G1080' => 'dzi', 'Duzib138G0324' => 'dzi', 'Duzib138G0394' => 'dzi', 'Duzib205G0122' => 'dzi', 'Duzib268G1020' => 'dzi', 'Duzib268G1359' => 'dzi', 'ECA232G3929' => 'eca', 'ECA236G2210' => 'eca', 'ECA236G2287' => 'eca', 'ECA240G4568' => 'eca', 'ECA247G0894' => 'eca', 'EL10Ac1g00200' => 'bvu', 'EL10Ac1g00886' => 'bvu', 'EL10As1g23091' => 'bvu', 'EL10As1g23092' => 'bvu', 'Eucgr.A01284' => 'egr', 'Eucgr.A01285' => 'egr', 'Eucgr.D02456' => 'egr', 'Eucgr.E00018' => 'egr', 'Eucgr.E01439' => 'egr', 'Eucgr.G02859' => 'egr', 'FAN01G0168' => 'fan', 'FAN01G0453' => 'fan', 'FAN01G2761' => 'fan', 'FAN02G1239' => 'fan', 'FAN03G0645' => 'fan', 'FAN03G2707' => 'fan', 'FAN03G2978' => 'fan', 'FAN04G0227' => 'fan', 'FAN06G0091' => 'fan', 'FAN06G1418' => 'fan', 'FAN06G1512' => 'fan', 'FAN06G1986' => 'fan', 'FAN06G2905' => 'fan', 'FAN06G4325' => 'fan', 'FAN08G0033' => 'fan', 'FAN09G0642' => 'fan', 'FAN10G1763' => 'fan', 'FAN10G2026' => 'fan', 'FAN10G2513' => 'fan', 'FAN10G3402' => 'fan', 'FAN10G3564' => 'fan', 'FAN10G3987' => 'fan', 'FAN13G1490' => 'fan', 'FAN14G5857' => 'fan', 'FAN18G1188' => 'fan', 'FvH4_5g00750' => 'fve', 'FvH4_6g13410' => 'fve', 'FvH4_7g11740' => 'fve', 'FvH4_7g17410' => 'fve', 'FvH4_7g18860' => 'fve', 'Glyma.01G099100' => 'gma', 'Glyma.01G142300' => 'gma', 'Glyma.03G025500' => 'gma', 'Glyma.03G069700' => 'gma', 'Glyma.03G260000' => 'gma', 'Glyma.09G269800' => 'gma', 'Glyma.10G208700' => 'gma', 'Glyma.18G220400' => 'gma', 'Glyma.20G182000' => 'gma', 'Gohir.A01G221726' => 'ghi', 'Gohir.A07G134600' => 'ghi', 'Gohir.A07G146000' => 'ghi', 'Gohir.A08G173900' => 'ghi', 'Gohir.A09G194900' => 'ghi', 'Gohir.A10G204100' => 'ghi', 'Gohir.A11G080600' => 'ghi', 'Gohir.A11G327500' => 'ghi', 'Gohir.A12G101800' => 'ghi', 'Gohir.D01G211200' => 'ghi', 'Gohir.D07G139200' => 'ghi', 'Gohir.D07G152100' => 'ghi', 'Gohir.D08G192600' => 'ghi', 'Gohir.D09G189200' => 'ghi', 'Gohir.D10G212000' => 'ghi', 'Gohir.D11G085200' => 'ghi', 'Gohir.D11G346400' => 'ghi', 'Gohir.D12G104800' => 'ghi', 'Gorai.001G151300' => 'gra', 'Gorai.001G174100' => 'gra', 'Gorai.002G257000' => 'gra', 'Gorai.004G202600' => 'gra', 'Gorai.007G090900' => 'gra', 'Gorai.007G376700' => 'gra', 'Gorai.008G114100' => 'gra', 'Gorai.011G237900' => 'gra', 'GSVIVG01005450001' => 'vvi', 'GSVIVG01016232001' => 'vvi', 'GSVIVG01026157001' => 'vvi', 'GSVIVG01027419001' => 'vvi', 'GSVIVG01027631001' => 'vvi', 'GSVIVG01034143001' => 'vvi', 'HanXRQChr03g0093921' => 'han', 'HanXRQChr04g0120001' => 'han', 'HanXRQChr04g0122561' => 'han', 'HanXRQChr09g0246851' => 'han', 'HanXRQChr10g0293311' => 'han', 'HanXRQChr13g0425231' => 'han', 'HanXRQChr16g0532571' => 'han', 'Haze_09050' => 'cav', 'Haze_15715' => 'cav', 'Haze_15716' => 'cav', 'Haze_16803' => 'cav', 'Haze_16850' => 'cav', 'Hma1.2p1_0301F.1_g118655' => 'hma', 'Hma1.2p1_0309F.1_g120590' => 'hma', 'Hma1.2p1_0936F.1_g238900' => 'hma', 'Hma1.2p1_3552F.1_g336740' => 'hma', 'HPP92_003520' => 'vpl', 'HPP92_006628' => 'vpl', 'HPP92_006645' => 'vpl', 'HPP92_014669' => 'vpl', 'HPP92_015077' => 'vpl', 'Hund16742' => 'sun', 'Hund17022' => 'sun', 'Lalb_Chr02g0152131' => 'lal', 'Lalb_Chr05g0225371' => 'lal', 'Lalb_Chr07g0189841' => 'lal', 'Lalb_Chr07g0192961' => 'lal', 'Lalb_Chr12g0208221' => 'lal', 'Lalb_Chr13g0291211' => 'lal', 'Lalb_Chr13g0291781' => 'lal', 'Lalb_Chr18g0044651' => 'lal', 'Lalb_Chr21g0313731' => 'lal', 'Lj1g0022533' => 'lja', 'Lj2A18T50' => 'lonja', 'Lj2A92G93' => 'lonja', 'Lj3A965T73' => 'lonja', 'Lj3g0000673' => 'lja', 'Lj3g0002666' => 'lja', 'Lj4g0016985' => 'lja', 'Lj5g0003625' => 'lja', 'Lj7A529G36' => 'lonja', 'Lj9A569T49' => 'lonja', 'Lj9A604T63' => 'lonja', 'Lsat_1_v5_gn_3_132060' => 'lsa', 'Lsat_1_v5_gn_4_68941' => 'lsa', 'Lsat_1_v5_gn_5_95580' => 'lsa', 'Lsat_1_v5_gn_7_161' => 'lsa', 'Lsat_1_v5_gn_7_7041' => 'lsa', 'Lsat_1_v5_gn_9_33481' => 'lsa', 'Lsat_1_v5_gn_9_68260' => 'lsa', 'Manes.01G073100' => 'mes', 'Manes.01G266300' => 'mes', 'Manes.02G033300' => 'mes', 'Manes.05G017900' => 'mes', 'Manes.05G046100' => 'mes', 'Manes.08G080900' => 'mes', 'Manes.10G049400' => 'mes', 'Mapoly0009s0186' => 'mpo', 'Mapoly0036s0118' => 'mpo', 'Mapoly0101s0046' => 'mpo', 'MBI04_g30218_MAGBIO' => 'mbi', 'MBI04_g35564_MAGBIO' => 'mbi', 'MBI12_g34011_MAGBIO' => 'mbi', 'MBI14_g04655_MAGBIO' => 'mbi', 'MCO07G653' => 'mco', 'MCO10G173' => 'mco', 'MD01G1087100' => 'mdo', 'MD01G1104200' => 'mdo', 'MD02G1205100' => 'mdo', 'MD04G1079200' => 'mdo', 'MD04G1131400' => 'mdo', 'MD07G1121600' => 'mdo', 'MD07G1157300' => 'mdo', 'MD07G1171000' => 'mdo', 'MD12G1144500' => 'mdo', 'Medtr1g094610' => 'mtr', 'Medtr4g021795' => 'mtr', 'Medtr4g023760' => 'mtr', 'Medtr7g118050' => 'mtr', 'MELO3C005582.2' => 'cme', 'MELO3C005989.2' => 'cme', 'MELO3C006192.2' => 'cme', 'MELO3C009248.2' => 'cme', 'MELO3C019817.2' => 'cme', 'Migut.B01625' => 'egut', 'Migut.B01915' => 'egut', 'Migut.F01721' => 'egut', 'Migut.J00314' => 'egut', 'MSTRG.20742' => 'ama', 'MSTRG.8134' => 'ama', 'Nitab4.5_0000096g0010' => 'nta', 'Nitab4.5_0000202g0030' => 'nta', 'Nitab4.5_0000216g0370' => 'nta', 'Nitab4.5_0000457g0230' => 'nta', 'Nitab4.5_0001702g0170' => 'nta', 'Nitab4.5_0003607g0010' => 'nta', 'Nitab4.5_0004917g0020' => 'nta', 'Nitab4.5_0007059g0010' => 'nta', 'Nitab4.5_0007184g0010' => 'nta', 'Nitab4.5_0007346g0020' => 'nta', 'Nn1g00410' => 'nnu', 'Nn1g01252' => 'nnu', 'Nn2g11168' => 'nnu', 'Nn2g13403' => 'nnu', 'Nn2g13760' => 'nnu', 'Nn4g26380' => 'nnu', 'Oeu000806.2' => 'oeu', 'Oeu005788.1' => 'oeu', 'Oeu006900.3' => 'oeu', 'Oeu007797.1' => 'oeu', 'Oeu011932.1' => 'oeu', 'Oeu022739.1' => 'oeu', 'Oeu037918.1' => 'oeu', 'Oeu055490.2' => 'oeu', 'Os01g0844400' => 'osa', 'Os02g0819100' => 'osa', 'Os03g0804300' => 'osa', 'Os05g0458000' => 'osa', 'Os07g0467800' => 'osa', 'Os12g0602200' => 'osa', 'Peaxi162Scf00013g03444' => 'pax', 'Peaxi162Scf00094g01120' => 'pax', 'Peaxi162Scf00191g01211' => 'pax', 'Peaxi162Scf00238g01110' => 'pax', 'Peaxi162Scf00330g00719' => 'pax', 'Peaxi162Scf00627g00018' => 'pax', 'PGR031G2686' => 'pgr', 'PGR042G0809' => 'pgr', 'PGR142G0193' => 'pgr', 'PGSC0003DMG400011066' => 'stu', 'PGSC0003DMG400012041' => 'stu', 'PGSC0003DMG400013678' => 'stu', 'PGSC0003DMG400023477' => 'stu', 'PGSC0003DMG400025956' => 'stu', 'PGSC0003DMG401019151' => 'stu', 'Phvul.006G116400' => 'pvu', 'Phvul.007G097300' => 'pvu', 'Phvul.010G015000' => 'pvu', 'Phvul.010G083900' => 'pvu', 'Potri.001G117100' => 'ptr', 'Potri.002G147300' => 'ptr', 'Potri.003G115600' => 'ptr', 'Potri.006G087400' => 'ptr', 'Potri.010G226100' => 'ptr', 'Potri.014G069200' => 'ptr', 'Potri.014G104000' => 'ptr', 'Potri.016G100200' => 'ptr', 'Pp3c10_20450' => 'ppa', 'Pp3c1_42400' => 'ppa', 'Pp3c3_24390' => 'ppa', 'Pp3c3_2860' => 'ppa', 'PRCOL_00003193' => 'pco', 'Prupe.2G144500' => 'ppe', 'Prupe.2G195700' => 'ppe', 'Prupe.2G209800' => 'ppe', 'Prupe.5G080000' => 'ppe', 'Prupe.6G257900' => 'ppe', 'Psat3g001160' => 'psa', 'Psat6g181880' => 'psa', 'Psat7g233720' => 'psa', 'PSO063G7587' => 'pso', 'PSO339G2145' => 'pso', 'PSO339G3369' => 'pso', 'PSO478G2747' => 'pso', 'PSO513G0140' => 'pso', 'PSO782G1614' => 'pso', 'PSO782G4889' => 'pso', 'PSO782G5485' => 'pso', 'PSO801G0241' => 'pso', 'QL07p048854' => 'qlo', 'QL08p046745' => 'qlo', 'QL08p052606' => 'qlo', 'QL08p053414' => 'qlo', 'QL08p054868' => 'qlo', 'RcHm_v2.0_Chr1g0350251' => 'rch', 'RcHm_v2.0_Chr1g0360851' => 'rch', 'RcHm_v2.0_Chr1g0362791' => 'rch', 'RcHm_v2.0_Chr3g0466281' => 'rch', 'RcHm_v2.0_Chr7g0201481' => 'rch', 'Rhsim01G0148600' => 'rsi', 'Rhsim05G0194400' => 'rsi', 'Rhsim07G0000700' => 'rsi', 'Rhsim07G0000800' => 'rsi', 'Rhsim07G0027900' => 'rsi', 'Rhsim09G0149500' => 'rsi', 'RhsimUnG0186900' => 'rsi', 'Sabra01G0089900' => 'sbr', 'Sabra02G0114700' => 'sbr', 'Sabra02G0116300' => 'sbr', 'Sabra03G0080100' => 'sbr', 'Sabra08G0024300' => 'sbr', 'Sabra10G0174300' => 'sbr', 'Sabra14G0048900' => 'sbr', 'Sabra14G0076500' => 'sbr', 'SalBow5G2513' => 'sbo', 'Sc01g0002300' => 'sci', 'Sc01g0004450' => 'sci', 'Sc06g0001680' => 'sci', 'Sc23g0003580' => 'sci', 'Sed0000913' => 'sed', 'Sed0001655' => 'sed', 'Sed0007745' => 'sed', 'Sed0010951' => 'sed', 'Sed0017599' => 'sed', 'Sed0021405' => 'sed', 'Sed0022810' => 'sed', 'SEGI_07099' => 'sgi', 'SEGI_11931' => 'sgi', 'SEGI_13187' => 'sgi', 'SEGI_29958' => 'sgi', 'SEGI_36351' => 'sgi', 'SGA_v2.0_scaffold126G33770' => 'sas', 'SGA_v2.0_scaffold153G37003' => 'sas', 'SGA_v2.0_scaffold2G01359' => 'sas', 'SGA_v2.0_scaffold5G03064' => 'sas', 'SGA_v2.0_scaffold95G28903' => 'sas', 'SHI12701' => 'shi', 'SHI26410' => 'shi', 'SHI38997' => 'shi', 'SHI53759' => 'shi', 'SHI53886' => 'shi', 'SHI54714' => 'shi', 'SMO011G0041' => 'smo', 'SMO146G0251' => 'smo', 'SMO160G0004' => 'smo', 'SMO174G0057' => 'smo', 'SMO244G0089' => 'smo', 'SMO296G0011' => 'smo', 'Solyc01g091280.3' => 'sly', 'Solyc05g047610.3' => 'sly', 'Solyc05g047640.3' => 'sly', 'Solyc05g055630.3' => 'sly', 'Solyc10g018160.2' => 'sly', 'Solyc10g084820.2' => 'sly', 'Solyc10g086565.2' => 'sly', 'Sopen01g037030' => 'spe', 'Sopen05g027920' => 'spe', 'Sopen05g034070' => 'spe', 'Sopen10g007260' => 'spe', 'Sopen10g034260' => 'spe', 'Sopen10g035950' => 'spe', 'Sp3g07710' => 'spa', 'Sp4g27420' => 'spa', 'Sp5g02450' => 'spa', 'Sp6g01280' => 'spa', 'Sp6g38480' => 'spa', 'Sp7g20780' => 'spa', 'TAR374G1413' => 'tar', 'TAR623G1777' => 'tar', 'TAR629G2370' => 'tar', 'TAR633G1759' => 'tar', 'TAR636G3387' => 'tar', 'THA.LOC104802447' => 'tha', 'THA.LOC104813916' => 'tha', 'THA.LOC104816423' => 'tha', 'THA.LOC104817246' => 'tha', 'THA.LOC104825895' => 'tha', 'Thecc.01G335200' => 'tca', 'Thecc.01G377400' => 'tca', 'Thecc.03G262200' => 'tca', 'Thecc.05G036800' => 'tca', 'Thecc.10G080500' => 'tca', 'Thecc.10G080800' => 'tca', 'Thhalv10001560m.g' => 'esa', 'Thhalv10006120m.g' => 'esa', 'Thhalv10014375m.g' => 'esa', 'Thhalv10021264m.g' => 'esa', 'Thhalv10028856m.g' => 'esa', 'TPR.G1914' => 'tpr', 'TPR.G4757' => 'tpr', 'TPR.G5595' => 'tpr', 'TWI14G0952' => 'twi', 'TWI14G1307' => 'twi', 'TWI38G2143' => 'twi', 'TWI59G0826' => 'twi', 'TWI77G0527' => 'twi', 'TWI81G0150' => 'twi', 'unitig_21.g21018' => 'ugi', 'unitig_26.g9725' => 'ugi', 'unitig_744.g24653' => 'ugi', 'unitig_749.g13778' => 'ugi', 'unitig_899.g15035' => 'ugi', 'vmacro04296' => 'vma', 'vmacro04852' => 'vma', 'vmacro13404' => 'vma', 'vmacro20169' => 'vma', 'vmacro21014' => 'vma', 'VMungo0331G0237' => 'vmu', 'VMungo0331G0706' => 'vmu', 'VMungo0331G1361' => 'vmu', 'VMungo0331G1489' => 'vmu', 'VMungo0540G1037' => 'vmu', 'VMungo0720G2487' => 'vmu', 'VMungo0720G2721' => 'vmu', 'Zm00001eb086860' => 'zma', 'Zm00001eb104760' => 'zma', 'Zm00001eb148220' => 'zma', 'Zm00001eb259030' => 'zma', 'Zm00001eb289590' => 'zma', 'Zm00001eb420150' => 'zma' ), 'gf_id' => 'HOM05D000968', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000968' ), 'data_identifier' => 'HOM05D000968', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000968', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p31690' => 'bna', 'A03p36040' => 'bna', 'A03p53730' => 'bna', 'A04p01410' => 'bna', 'A05p05420' => 'bna', 'A05p39630' => 'bna', 'A05p39640' => 'bna', 'A09p00970' => 'bna', 'A09p53060' => 'bna', 'A10p31890' => 'bna', 'Aa31LG10G15040' => 'aar', 'Aa31LG1G21090' => 'aar', 'Aa31LG1G26900' => 'aar', 'Aa31LG3G1820' => 'aar', 'Aa31LG5G1100' => 'aar', 'Aa31LG6G4740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2265' => 'aag', 'Actinidia07998' => 'ach', 'Actinidia11266' => 'ach', 'Actinidia12682' => 'ach', 'Actinidia26479' => 'ach', 'Actinidia31406' => 'ach', 'Actinidia32437' => 'ach', 'Actinidia38862' => 'ach', 'Ah.05g174230' => 'amhyb', 'Ah.05g179070' => 'amhyb', 'Ah.05g179090' => 'amhyb', 'Ah.12g059950' => 'amhyb', 'AL3G20480' => 'aly', 'AL4G44520' => 'aly', 'AL5G43110' => 'aly', 'AL6G13890' => 'aly', 'AL6G52620' => 'aly', 'AL7G30830' => 'aly', 'Aqoxy1G00899' => 'aox', 'Aqoxy5G04333' => 'aox', 'Aqoxy7G00641' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3IZ0NN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4EF6AW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W9P8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79GA3M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C43NQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFCU6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G95YVJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCHK29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LU1UG8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX91RN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGB4B1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8DA0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9H7JI' => 'arhy', 'AT3G09320' => 'ath', 'AT3G60800' => 'ath', 'AT4G00840' => 'ath', 'AT4G22750' => 'ath', 'AT5G04270' => 'ath', 'ATR0090G003' => 'atr', 'ATR0559G349' => 'atr', 'ATR0680G261' => 'atr', 'ATR0810G048' => 'atr', 'Atru.chr12.831' => 'acertr', 'Atru.chr5.303' => 'acertr', 'Atru.chr5.748' => 'acertr', 'Atru.chr8.1999' => 'acertr', 'Atru.chr9.1436' => 'acertr', 'AUR62004211' => 'cqu', 'AUR62004548' => 'cqu', 'AUR62013637' => 'cqu', 'AUR62022662' => 'cqu', 'AUR62025777' => 'cqu', 'AUR62042386' => 'cqu', 'BcaB01g02310' => 'bca', 'BcaB01g06062' => 'bca', 'BcaB02g08975' => 'bca', 'BcaB02g08980' => 'bca', 'BcaC01g04228' => 'bca', 'BcaC01g06830' => 'bca', 'BcaC02g10186' => 'bca', 'BcaC02g12214' => 'bca', 'BcaC04g24101' => 'bca', 'BcaC05g29520' => 'bca', 'BcaC05g29661' => 'bca', 'BcaC06g32130' => 'bca', 'BcaC06g32131' => 'bca', 'BcaC07g40601' => 'bca', 'BcaC07g42641' => 'bca', 'BcaNung01038' => 'bca', 'BcaNung01676' => 'bca', 'BcaNung02480' => 'bca', 'BcaNung07376' => 'bca', 'BolC3t16146H' => 'bol', 'BolC3t16637H' => 'bol', 'BolC4t22257H' => 'bol', 'BolC4t24728H' => 'bol', 'BolC5t34517H' => 'bol', 'BolC7t45703H' => 'bol', 'BolC8t51166H' => 'bol', 'BolC9t53038H' => 'bol', 'BolC9t60000H' => 'bol', 'BraA01t01345Z' => 'bra', 'BraA01t01346Z' => 'bra', 'BraA01t01348Z' => 'bra', 'BraA03t12347Z' => 'bra', 'BraA03t12775Z' => 'bra', 'BraA03t14439Z' => 'bra', 'BraA04t15860Z' => 'bra', 'BraA05t19511Z' => 'bra', 'BraA05t22746Z' => 'bra', 'BraA09t35767Z' => 'bra', 'BraA09t40732Z' => 'bra', 'BraA10t45233Z' => 'bra', 'C03p38720' => 'bna', 'C03p43680' => 'bna', 'C04p06350' => 'bna', 'C04p31800' => 'bna', 'C05p58680' => 'bna', 'C07p52110' => 'bna', 'C08p35760' => 'bna', 'C09p01050' => 'bna', 'C09p72600' => 'bna', 'CAN.G106.2' => 'can', 'CAN.G1482.1' => 'can', 'CAN.G324.12' => 'can', 'CAN.G388.20' => 'can', 'CAN.G412.7' => 'can', 'CAN.G694.32' => 'can', 'CAN.G92.12' => 'can', 'CANSAT11G2353' => 'cansat', 'CANSAT21G1398' => 'cansat', 'CANSAT56G2456' => 'cansat', 'CANSAT56G3031' => 'cansat', 'CANSAT56G4539' => 'cansat', 'CARHR083680' => 'chi', 'CARHR171190' => 'chi', 'CARHR209010' => 'chi', 'CARHR229680' => 'chi', 'CARHR249490' => 'chi', 'Carub.0003s0844' => 'cru', 'Carub.0005s2755' => 'cru', 'Carub.0006s0322' => 'cru', 'Carub.0006s3586' => 'cru', 'Carub.0007s1855' => 'cru', 'Ca_07808_v3' => 'car', 'Ca_09535_v3' => 'car', 'Ca_10548_v3' => 'car', 'Ca_19913_v3' => 'car', 'Ca_19916_v3' => 'car', 'Ca_19975_v3' => 'car', 'CBR_g22876' => 'cbr', 'CBR_g22879' => 'cbr', 'CBR_g38491' => 'cbr', 'CBR_g54185' => 'cbr', 'CBR_g54190' => 'cbr', 'Cc02_g11020' => 'ccan', 'Cc02_g23920' => 'ccan', 'Cc02_g39860' => 'ccan', 'Cc02_g39870' => 'ccan', 'Cc03_g06760' => 'ccan', 'Cc06_g02450' => 'ccan', 'Cc09_g09450' => 'ccan', 'CDE02G1959' => 'cde', 'CDE04G0600' => 'cde', 'CDE07G1996' => 'cde', 'CDE07G2078' => 'cde', 'CDE11G0611' => 'cde', 'Cfa001683' => 'cfa', 'Cfa001734' => 'cfa', 'Cfa001737' => 'cfa', 'Cfa003751' => 'cfa', 'Cfa012019' => 'cfa', 'Cfa017353' => 'cfa', 'Cfa017732' => 'cfa', 'Cfa022464' => 'cfa', 'Ciclev10012400m.g' => 'ccl', 'Ciclev10021242m.g' => 'ccl', 'Ciclev10021302m.g' => 'ccl', 'Ciclev10021463m.g' => 'ccl', 'Ciclev10032359m.g' => 'ccl', 'CiPaw.01G081000' => 'cil', 'CiPaw.01G262500' => 'cil', 'CiPaw.01G269800' => 'cil', 'CiPaw.02G168400' => 'cil', 'CiPaw.05G119500' => 'cil', 'CiPaw.11G147300' => 'cil', 'ClCG01G003630' => 'cla', 'ClCG05G000510' => 'cla', 'ClCG05G002300' => 'cla', 'ClCG08G007650' => 'cla', 'ClCG10G021250' => 'cla', 'COL.COLO4_06218' => 'col', 'COL.COLO4_12538' => 'col', 'COL.COLO4_14775' => 'col', 'COL.COLO4_23875' => 'col', 'Cpa.g.sc141.16' => 'cpa', 'Cpa.g.sc169.16' => 'cpa', 'Cpa.g.sc244.4' => 'cpa', 'Cpa.g.sc244.5' => 'cpa', 'Cpa.g.sc29.87' => 'cpa', 'Cpa.g.sc53.115' => 'cpa', 'Cre03.g207502' => 'cre', 'Cre06.g277000' => 'cre', 'Cre09.g394050' => 'cre', 'CsaV3_3G007680' => 'csa', 'CsaV3_3G009710' => 'csa', 'CsaV3_3G034790' => 'csa', 'CsaV3_5G003750' => 'csa', 'CsaV3_6G036620' => 'csa', 'CSS0002288' => 'camsi', 'CSS0011250' => 'camsi', 'CSS0021619' => 'camsi', 'CSS0046701' => 'camsi', 'DCAR_006420' => 'dca', 'DCAR_006865' => 'dca', 'DCAR_008558' => 'dca', 'DCAR_028754' => 'dca', 'DCAR_028755' => 'dca', 'Dinv31218' => 'din', 'Dinv32371' => 'din', 'Dinv34250' => 'din', 'Dinv37156' => 'din', 'Dinv43704' => 'din', 'Duzib093G1811' => 'dzi', 'Duzib106G1622' => 'dzi', 'Duzib114G0504' => 'dzi', 'Duzib128G0338' => 'dzi', 'Duzib128G1577' => 'dzi', 'Duzib133G0104' => 'dzi', 'Duzib133G1080' => 'dzi', 'Duzib138G0324' => 'dzi', 'Duzib138G0394' => 'dzi', 'Duzib205G0122' => 'dzi', 'Duzib268G1020' => 'dzi', 'Duzib268G1359' => 'dzi', 'ECA232G3929' => 'eca', 'ECA236G2210' => 'eca', 'ECA236G2287' => 'eca', 'ECA240G4568' => 'eca', 'ECA247G0894' => 'eca', 'EL10Ac1g00200' => 'bvu', 'EL10Ac1g00886' => 'bvu', 'EL10As1g23091' => 'bvu', 'EL10As1g23092' => 'bvu', 'Eucgr.A01284' => 'egr', 'Eucgr.A01285' => 'egr', 'Eucgr.D02456' => 'egr', 'Eucgr.E00018' => 'egr', 'Eucgr.E01439' => 'egr', 'Eucgr.G02859' => 'egr', 'FAN01G0168' => 'fan', 'FAN01G0453' => 'fan', 'FAN01G2761' => 'fan', 'FAN02G1239' => 'fan', 'FAN03G0645' => 'fan', 'FAN03G2707' => 'fan', 'FAN03G2978' => 'fan', 'FAN04G0227' => 'fan', 'FAN06G0091' => 'fan', 'FAN06G1418' => 'fan', 'FAN06G1512' => 'fan', 'FAN06G1986' => 'fan', 'FAN06G2905' => 'fan', 'FAN06G4325' => 'fan', 'FAN08G0033' => 'fan', 'FAN09G0642' => 'fan', 'FAN10G1763' => 'fan', 'FAN10G2026' => 'fan', 'FAN10G2513' => 'fan', 'FAN10G3402' => 'fan', 'FAN10G3564' => 'fan', 'FAN10G3987' => 'fan', 'FAN13G1490' => 'fan', 'FAN14G5857' => 'fan', 'FAN18G1188' => 'fan', 'FvH4_5g00750' => 'fve', 'FvH4_6g13410' => 'fve', 'FvH4_7g11740' => 'fve', 'FvH4_7g17410' => 'fve', 'FvH4_7g18860' => 'fve', 'Glyma.01G099100' => 'gma', 'Glyma.01G142300' => 'gma', 'Glyma.03G025500' => 'gma', 'Glyma.03G069700' => 'gma', 'Glyma.03G260000' => 'gma', 'Glyma.09G269800' => 'gma', 'Glyma.10G208700' => 'gma', 'Glyma.18G220400' => 'gma', 'Glyma.20G182000' => 'gma', 'Gohir.A01G221726' => 'ghi', 'Gohir.A07G134600' => 'ghi', 'Gohir.A07G146000' => 'ghi', 'Gohir.A08G173900' => 'ghi', 'Gohir.A09G194900' => 'ghi', 'Gohir.A10G204100' => 'ghi', 'Gohir.A11G080600' => 'ghi', 'Gohir.A11G327500' => 'ghi', 'Gohir.A12G101800' => 'ghi', 'Gohir.D01G211200' => 'ghi', 'Gohir.D07G139200' => 'ghi', 'Gohir.D07G152100' => 'ghi', 'Gohir.D08G192600' => 'ghi', 'Gohir.D09G189200' => 'ghi', 'Gohir.D10G212000' => 'ghi', 'Gohir.D11G085200' => 'ghi', 'Gohir.D11G346400' => 'ghi', 'Gohir.D12G104800' => 'ghi', 'Gorai.001G151300' => 'gra', 'Gorai.001G174100' => 'gra', 'Gorai.002G257000' => 'gra', 'Gorai.004G202600' => 'gra', 'Gorai.007G090900' => 'gra', 'Gorai.007G376700' => 'gra', 'Gorai.008G114100' => 'gra', 'Gorai.011G237900' => 'gra', 'GSVIVG01005450001' => 'vvi', 'GSVIVG01016232001' => 'vvi', 'GSVIVG01026157001' => 'vvi', 'GSVIVG01027419001' => 'vvi', 'GSVIVG01027631001' => 'vvi', 'GSVIVG01034143001' => 'vvi', 'HanXRQChr03g0093921' => 'han', 'HanXRQChr04g0120001' => 'han', 'HanXRQChr04g0122561' => 'han', 'HanXRQChr09g0246851' => 'han', 'HanXRQChr10g0293311' => 'han', 'HanXRQChr13g0425231' => 'han', 'HanXRQChr16g0532571' => 'han', 'Haze_09050' => 'cav', 'Haze_15715' => 'cav', 'Haze_15716' => 'cav', 'Haze_16803' => 'cav', 'Haze_16850' => 'cav', 'Hma1.2p1_0301F.1_g118655' => 'hma', 'Hma1.2p1_0309F.1_g120590' => 'hma', 'Hma1.2p1_0936F.1_g238900' => 'hma', 'Hma1.2p1_3552F.1_g336740' => 'hma', 'HPP92_003520' => 'vpl', 'HPP92_006628' => 'vpl', 'HPP92_006645' => 'vpl', 'HPP92_014669' => 'vpl', 'HPP92_015077' => 'vpl', 'Hund16742' => 'sun', 'Hund17022' => 'sun', 'Lalb_Chr02g0152131' => 'lal', 'Lalb_Chr05g0225371' => 'lal', 'Lalb_Chr07g0189841' => 'lal', 'Lalb_Chr07g0192961' => 'lal', 'Lalb_Chr12g0208221' => 'lal', 'Lalb_Chr13g0291211' => 'lal', 'Lalb_Chr13g0291781' => 'lal', 'Lalb_Chr18g0044651' => 'lal', 'Lalb_Chr21g0313731' => 'lal', 'Lj1g0022533' => 'lja', 'Lj2A18T50' => 'lonja', 'Lj2A92G93' => 'lonja', 'Lj3A965T73' => 'lonja', 'Lj3g0000673' => 'lja', 'Lj3g0002666' => 'lja', 'Lj4g0016985' => 'lja', 'Lj5g0003625' => 'lja', 'Lj7A529G36' => 'lonja', 'Lj9A569T49' => 'lonja', 'Lj9A604T63' => 'lonja', 'Lsat_1_v5_gn_3_132060' => 'lsa', 'Lsat_1_v5_gn_4_68941' => 'lsa', 'Lsat_1_v5_gn_5_95580' => 'lsa', 'Lsat_1_v5_gn_7_161' => 'lsa', 'Lsat_1_v5_gn_7_7041' => 'lsa', 'Lsat_1_v5_gn_9_33481' => 'lsa', 'Lsat_1_v5_gn_9_68260' => 'lsa', 'Manes.01G073100' => 'mes', 'Manes.01G266300' => 'mes', 'Manes.02G033300' => 'mes', 'Manes.05G017900' => 'mes', 'Manes.05G046100' => 'mes', 'Manes.08G080900' => 'mes', 'Manes.10G049400' => 'mes', 'Mapoly0009s0186' => 'mpo', 'Mapoly0036s0118' => 'mpo', 'Mapoly0101s0046' => 'mpo', 'MBI04_g30218_MAGBIO' => 'mbi', 'MBI04_g35564_MAGBIO' => 'mbi', 'MBI12_g34011_MAGBIO' => 'mbi', 'MBI14_g04655_MAGBIO' => 'mbi', 'MCO07G653' => 'mco', 'MCO10G173' => 'mco', 'MD01G1087100' => 'mdo', 'MD01G1104200' => 'mdo', 'MD02G1205100' => 'mdo', 'MD04G1079200' => 'mdo', 'MD04G1131400' => 'mdo', 'MD07G1121600' => 'mdo', 'MD07G1157300' => 'mdo', 'MD07G1171000' => 'mdo', 'MD12G1144500' => 'mdo', 'Medtr1g094610' => 'mtr', 'Medtr4g021795' => 'mtr', 'Medtr4g023760' => 'mtr', 'Medtr7g118050' => 'mtr', 'MELO3C005582.2' => 'cme', 'MELO3C005989.2' => 'cme', 'MELO3C006192.2' => 'cme', 'MELO3C009248.2' => 'cme', 'MELO3C019817.2' => 'cme', 'Migut.B01625' => 'egut', 'Migut.B01915' => 'egut', 'Migut.F01721' => 'egut', 'Migut.J00314' => 'egut', 'MSTRG.20742' => 'ama', 'MSTRG.8134' => 'ama', 'Nitab4.5_0000096g0010' => 'nta', 'Nitab4.5_0000202g0030' => 'nta', 'Nitab4.5_0000216g0370' => 'nta', 'Nitab4.5_0000457g0230' => 'nta', 'Nitab4.5_0001702g0170' => 'nta', 'Nitab4.5_0003607g0010' => 'nta', 'Nitab4.5_0004917g0020' => 'nta', 'Nitab4.5_0007059g0010' => 'nta', 'Nitab4.5_0007184g0010' => 'nta', 'Nitab4.5_0007346g0020' => 'nta', 'Nn1g00410' => 'nnu', 'Nn1g01252' => 'nnu', 'Nn2g11168' => 'nnu', 'Nn2g13403' => 'nnu', 'Nn2g13760' => 'nnu', 'Nn4g26380' => 'nnu', 'Oeu000806.2' => 'oeu', 'Oeu005788.1' => 'oeu', 'Oeu006900.3' => 'oeu', 'Oeu007797.1' => 'oeu', 'Oeu011932.1' => 'oeu', 'Oeu022739.1' => 'oeu', 'Oeu037918.1' => 'oeu', 'Oeu055490.2' => 'oeu', 'Os01g0844400' => 'osa', 'Os02g0819100' => 'osa', 'Os03g0804300' => 'osa', 'Os05g0458000' => 'osa', 'Os07g0467800' => 'osa', 'Os12g0602200' => 'osa', 'Peaxi162Scf00013g03444' => 'pax', 'Peaxi162Scf00094g01120' => 'pax', 'Peaxi162Scf00191g01211' => 'pax', 'Peaxi162Scf00238g01110' => 'pax', 'Peaxi162Scf00330g00719' => 'pax', 'Peaxi162Scf00627g00018' => 'pax', 'PGR031G2686' => 'pgr', 'PGR042G0809' => 'pgr', 'PGR142G0193' => 'pgr', 'PGSC0003DMG400011066' => 'stu', 'PGSC0003DMG400012041' => 'stu', 'PGSC0003DMG400013678' => 'stu', 'PGSC0003DMG400023477' => 'stu', 'PGSC0003DMG400025956' => 'stu', 'PGSC0003DMG401019151' => 'stu', 'Phvul.006G116400' => 'pvu', 'Phvul.007G097300' => 'pvu', 'Phvul.010G015000' => 'pvu', 'Phvul.010G083900' => 'pvu', 'Potri.001G117100' => 'ptr', 'Potri.002G147300' => 'ptr', 'Potri.003G115600' => 'ptr', 'Potri.006G087400' => 'ptr', 'Potri.010G226100' => 'ptr', 'Potri.014G069200' => 'ptr', 'Potri.014G104000' => 'ptr', 'Potri.016G100200' => 'ptr', 'Pp3c10_20450' => 'ppa', 'Pp3c1_42400' => 'ppa', 'Pp3c3_24390' => 'ppa', 'Pp3c3_2860' => 'ppa', 'PRCOL_00003193' => 'pco', 'Prupe.2G144500' => 'ppe', 'Prupe.2G195700' => 'ppe', 'Prupe.2G209800' => 'ppe', 'Prupe.5G080000' => 'ppe', 'Prupe.6G257900' => 'ppe', 'Psat3g001160' => 'psa', 'Psat6g181880' => 'psa', 'Psat7g233720' => 'psa', 'PSO063G7587' => 'pso', 'PSO339G2145' => 'pso', 'PSO339G3369' => 'pso', 'PSO478G2747' => 'pso', 'PSO513G0140' => 'pso', 'PSO782G1614' => 'pso', 'PSO782G4889' => 'pso', 'PSO782G5485' => 'pso', 'PSO801G0241' => 'pso', 'QL07p048854' => 'qlo', 'QL08p046745' => 'qlo', 'QL08p052606' => 'qlo', 'QL08p053414' => 'qlo', 'QL08p054868' => 'qlo', 'RcHm_v2.0_Chr1g0350251' => 'rch', 'RcHm_v2.0_Chr1g0360851' => 'rch', 'RcHm_v2.0_Chr1g0362791' => 'rch', 'RcHm_v2.0_Chr3g0466281' => 'rch', 'RcHm_v2.0_Chr7g0201481' => 'rch', 'Rhsim01G0148600' => 'rsi', 'Rhsim05G0194400' => 'rsi', 'Rhsim07G0000700' => 'rsi', 'Rhsim07G0000800' => 'rsi', 'Rhsim07G0027900' => 'rsi', 'Rhsim09G0149500' => 'rsi', 'RhsimUnG0186900' => 'rsi', 'Sabra01G0089900' => 'sbr', 'Sabra02G0114700' => 'sbr', 'Sabra02G0116300' => 'sbr', 'Sabra03G0080100' => 'sbr', 'Sabra08G0024300' => 'sbr', 'Sabra10G0174300' => 'sbr', 'Sabra14G0048900' => 'sbr', 'Sabra14G0076500' => 'sbr', 'SalBow5G2513' => 'sbo', 'Sc01g0002300' => 'sci', 'Sc01g0004450' => 'sci', 'Sc06g0001680' => 'sci', 'Sc23g0003580' => 'sci', 'Sed0000913' => 'sed', 'Sed0001655' => 'sed', 'Sed0007745' => 'sed', 'Sed0010951' => 'sed', 'Sed0017599' => 'sed', 'Sed0021405' => 'sed', 'Sed0022810' => 'sed', 'SEGI_07099' => 'sgi', 'SEGI_11931' => 'sgi', 'SEGI_13187' => 'sgi', 'SEGI_29958' => 'sgi', 'SEGI_36351' => 'sgi', 'SGA_v2.0_scaffold126G33770' => 'sas', 'SGA_v2.0_scaffold153G37003' => 'sas', 'SGA_v2.0_scaffold2G01359' => 'sas', 'SGA_v2.0_scaffold5G03064' => 'sas', 'SGA_v2.0_scaffold95G28903' => 'sas', 'SHI12701' => 'shi', 'SHI26410' => 'shi', 'SHI38997' => 'shi', 'SHI53759' => 'shi', 'SHI53886' => 'shi', 'SHI54714' => 'shi', 'SMO011G0041' => 'smo', 'SMO146G0251' => 'smo', 'SMO160G0004' => 'smo', 'SMO174G0057' => 'smo', 'SMO244G0089' => 'smo', 'SMO296G0011' => 'smo', 'Solyc01g091280.3' => 'sly', 'Solyc05g047610.3' => 'sly', 'Solyc05g047640.3' => 'sly', 'Solyc05g055630.3' => 'sly', 'Solyc10g018160.2' => 'sly', 'Solyc10g084820.2' => 'sly', 'Solyc10g086565.2' => 'sly', 'Sopen01g037030' => 'spe', 'Sopen05g027920' => 'spe', 'Sopen05g034070' => 'spe', 'Sopen10g007260' => 'spe', 'Sopen10g034260' => 'spe', 'Sopen10g035950' => 'spe', 'Sp3g07710' => 'spa', 'Sp4g27420' => 'spa', 'Sp5g02450' => 'spa', 'Sp6g01280' => 'spa', 'Sp6g38480' => 'spa', 'Sp7g20780' => 'spa', 'TAR374G1413' => 'tar', 'TAR623G1777' => 'tar', 'TAR629G2370' => 'tar', 'TAR633G1759' => 'tar', 'TAR636G3387' => 'tar', 'THA.LOC104802447' => 'tha', 'THA.LOC104813916' => 'tha', 'THA.LOC104816423' => 'tha', 'THA.LOC104817246' => 'tha', 'THA.LOC104825895' => 'tha', 'Thecc.01G335200' => 'tca', 'Thecc.01G377400' => 'tca', 'Thecc.03G262200' => 'tca', 'Thecc.05G036800' => 'tca', 'Thecc.10G080500' => 'tca', 'Thecc.10G080800' => 'tca', 'Thhalv10001560m.g' => 'esa', 'Thhalv10006120m.g' => 'esa', 'Thhalv10014375m.g' => 'esa', 'Thhalv10021264m.g' => 'esa', 'Thhalv10028856m.g' => 'esa', 'TPR.G1914' => 'tpr', 'TPR.G4757' => 'tpr', 'TPR.G5595' => 'tpr', 'TWI14G0952' => 'twi', 'TWI14G1307' => 'twi', 'TWI38G2143' => 'twi', 'TWI59G0826' => 'twi', 'TWI77G0527' => 'twi', 'TWI81G0150' => 'twi', 'unitig_21.g21018' => 'ugi', 'unitig_26.g9725' => 'ugi', 'unitig_744.g24653' => 'ugi', 'unitig_749.g13778' => 'ugi', 'unitig_899.g15035' => 'ugi', 'vmacro04296' => 'vma', 'vmacro04852' => 'vma', 'vmacro13404' => 'vma', 'vmacro20169' => 'vma', 'vmacro21014' => 'vma', 'VMungo0331G0237' => 'vmu', 'VMungo0331G0706' => 'vmu', 'VMungo0331G1361' => 'vmu', 'VMungo0331G1489' => 'vmu', 'VMungo0540G1037' => 'vmu', 'VMungo0720G2487' => 'vmu', 'VMungo0720G2721' => 'vmu', 'Zm00001eb086860' => 'zma', 'Zm00001eb104760' => 'zma', 'Zm00001eb148220' => 'zma', 'Zm00001eb259030' => 'zma', 'Zm00001eb289590' => 'zma', 'Zm00001eb420150' => 'zma' ) $gf_id = 'HOM05D000968' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000968' ) $data_identifier = 'HOM05D000968' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 19, 'bol' => (int) 9, 'bra' => (int) 12, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 5, 'ccan' => (int) 7, 'cde' => (int) 5, 'cfa' => (int) 8, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 4, 'dca' => (int) 5, 'din' => (int) 5, 'dzi' => (int) 12, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 25, 'fve' => (int) 5, 'gma' => (int) 9, 'ghi' => (int) 18, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 7, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 5, 'sun' => (int) 2, 'lal' => (int) 9, 'lja' => (int) 5, 'lonja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 9, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 2, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 3, 'stu' => (int) 6, 'pvu' => (int) 4, 'ptr' => (int) 8, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 3, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 1, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 5, 'sas' => (int) 5, 'shi' => (int) 6, 'smo' => (int) 6, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 3, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420150' $species_info = array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ) $local_species = 'qlo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000968', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p31690' => 'bna', 'A03p36040' => 'bna', 'A03p53730' => 'bna', 'A04p01410' => 'bna', 'A05p05420' => 'bna', 'A05p39630' => 'bna', 'A05p39640' => 'bna', 'A09p00970' => 'bna', 'A09p53060' => 'bna', 'A10p31890' => 'bna', 'Aa31LG10G15040' => 'aar', 'Aa31LG1G21090' => 'aar', 'Aa31LG1G26900' => 'aar', 'Aa31LG3G1820' => 'aar', 'Aa31LG5G1100' => 'aar', 'Aa31LG6G4740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2265' => 'aag', 'Actinidia07998' => 'ach', 'Actinidia11266' => 'ach', 'Actinidia12682' => 'ach', 'Actinidia26479' => 'ach', 'Actinidia31406' => 'ach', 'Actinidia32437' => 'ach', 'Actinidia38862' => 'ach', 'Ah.05g174230' => 'amhyb', 'Ah.05g179070' => 'amhyb', 'Ah.05g179090' => 'amhyb', 'Ah.12g059950' => 'amhyb', 'AL3G20480' => 'aly', 'AL4G44520' => 'aly', 'AL5G43110' => 'aly', 'AL6G13890' => 'aly', 'AL6G52620' => 'aly', 'AL7G30830' => 'aly', 'Aqoxy1G00899' => 'aox', 'Aqoxy5G04333' => 'aox', 'Aqoxy7G00641' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3IZ0NN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4EF6AW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W9P8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79GA3M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C43NQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFCU6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G95YVJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCHK29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LU1UG8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX91RN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGB4B1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8DA0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9H7JI' => 'arhy', 'AT3G09320' => 'ath', 'AT3G60800' => 'ath', 'AT4G00840' => 'ath', 'AT4G22750' => 'ath', 'AT5G04270' => 'ath', 'ATR0090G003' => 'atr', 'ATR0559G349' => 'atr', 'ATR0680G261' => 'atr', 'ATR0810G048' => 'atr', 'Atru.chr12.831' => 'acertr', 'Atru.chr5.303' => 'acertr', 'Atru.chr5.748' => 'acertr', 'Atru.chr8.1999' => 'acertr', 'Atru.chr9.1436' => 'acertr', 'AUR62004211' => 'cqu', 'AUR62004548' => 'cqu', 'AUR62013637' => 'cqu', 'AUR62022662' => 'cqu', 'AUR62025777' => 'cqu', 'AUR62042386' => 'cqu', 'BcaB01g02310' => 'bca', 'BcaB01g06062' => 'bca', 'BcaB02g08975' => 'bca', 'BcaB02g08980' => 'bca', 'BcaC01g04228' => 'bca', 'BcaC01g06830' => 'bca', 'BcaC02g10186' => 'bca', 'BcaC02g12214' => 'bca', 'BcaC04g24101' => 'bca', 'BcaC05g29520' => 'bca', 'BcaC05g29661' => 'bca', 'BcaC06g32130' => 'bca', 'BcaC06g32131' => 'bca', 'BcaC07g40601' => 'bca', 'BcaC07g42641' => 'bca', 'BcaNung01038' => 'bca', 'BcaNung01676' => 'bca', 'BcaNung02480' => 'bca', 'BcaNung07376' => 'bca', 'BolC3t16146H' => 'bol', 'BolC3t16637H' => 'bol', 'BolC4t22257H' => 'bol', 'BolC4t24728H' => 'bol', 'BolC5t34517H' => 'bol', 'BolC7t45703H' => 'bol', 'BolC8t51166H' => 'bol', 'BolC9t53038H' => 'bol', 'BolC9t60000H' => 'bol', 'BraA01t01345Z' => 'bra', 'BraA01t01346Z' => 'bra', 'BraA01t01348Z' => 'bra', 'BraA03t12347Z' => 'bra', 'BraA03t12775Z' => 'bra', 'BraA03t14439Z' => 'bra', 'BraA04t15860Z' => 'bra', 'BraA05t19511Z' => 'bra', 'BraA05t22746Z' => 'bra', 'BraA09t35767Z' => 'bra', 'BraA09t40732Z' => 'bra', 'BraA10t45233Z' => 'bra', 'C03p38720' => 'bna', 'C03p43680' => 'bna', 'C04p06350' => 'bna', 'C04p31800' => 'bna', 'C05p58680' => 'bna', 'C07p52110' => 'bna', 'C08p35760' => 'bna', 'C09p01050' => 'bna', 'C09p72600' => 'bna', 'CAN.G106.2' => 'can', 'CAN.G1482.1' => 'can', 'CAN.G324.12' => 'can', 'CAN.G388.20' => 'can', 'CAN.G412.7' => 'can', 'CAN.G694.32' => 'can', 'CAN.G92.12' => 'can', 'CANSAT11G2353' => 'cansat', 'CANSAT21G1398' => 'cansat', 'CANSAT56G2456' => 'cansat', 'CANSAT56G3031' => 'cansat', 'CANSAT56G4539' => 'cansat', 'CARHR083680' => 'chi', 'CARHR171190' => 'chi', 'CARHR209010' => 'chi', 'CARHR229680' => 'chi', 'CARHR249490' => 'chi', 'Carub.0003s0844' => 'cru', 'Carub.0005s2755' => 'cru', 'Carub.0006s0322' => 'cru', 'Carub.0006s3586' => 'cru', 'Carub.0007s1855' => 'cru', 'Ca_07808_v3' => 'car', 'Ca_09535_v3' => 'car', 'Ca_10548_v3' => 'car', 'Ca_19913_v3' => 'car', 'Ca_19916_v3' => 'car', 'Ca_19975_v3' => 'car', 'CBR_g22876' => 'cbr', 'CBR_g22879' => 'cbr', 'CBR_g38491' => 'cbr', 'CBR_g54185' => 'cbr', 'CBR_g54190' => 'cbr', 'Cc02_g11020' => 'ccan', 'Cc02_g23920' => 'ccan', 'Cc02_g39860' => 'ccan', 'Cc02_g39870' => 'ccan', 'Cc03_g06760' => 'ccan', 'Cc06_g02450' => 'ccan', 'Cc09_g09450' => 'ccan', 'CDE02G1959' => 'cde', 'CDE04G0600' => 'cde', 'CDE07G1996' => 'cde', 'CDE07G2078' => 'cde', 'CDE11G0611' => 'cde', 'Cfa001683' => 'cfa', 'Cfa001734' => 'cfa', 'Cfa001737' => 'cfa', 'Cfa003751' => 'cfa', 'Cfa012019' => 'cfa', 'Cfa017353' => 'cfa', 'Cfa017732' => 'cfa', 'Cfa022464' => 'cfa', 'Ciclev10012400m.g' => 'ccl', 'Ciclev10021242m.g' => 'ccl', 'Ciclev10021302m.g' => 'ccl', 'Ciclev10021463m.g' => 'ccl', 'Ciclev10032359m.g' => 'ccl', 'CiPaw.01G081000' => 'cil', 'CiPaw.01G262500' => 'cil', 'CiPaw.01G269800' => 'cil', 'CiPaw.02G168400' => 'cil', 'CiPaw.05G119500' => 'cil', 'CiPaw.11G147300' => 'cil', 'ClCG01G003630' => 'cla', 'ClCG05G000510' => 'cla', 'ClCG05G002300' => 'cla', 'ClCG08G007650' => 'cla', 'ClCG10G021250' => 'cla', 'COL.COLO4_06218' => 'col', 'COL.COLO4_12538' => 'col', 'COL.COLO4_14775' => 'col', 'COL.COLO4_23875' => 'col', 'Cpa.g.sc141.16' => 'cpa', 'Cpa.g.sc169.16' => 'cpa', 'Cpa.g.sc244.4' => 'cpa', 'Cpa.g.sc244.5' => 'cpa', 'Cpa.g.sc29.87' => 'cpa', 'Cpa.g.sc53.115' => 'cpa', 'Cre03.g207502' => 'cre', 'Cre06.g277000' => 'cre', 'Cre09.g394050' => 'cre', 'CsaV3_3G007680' => 'csa', 'CsaV3_3G009710' => 'csa', 'CsaV3_3G034790' => 'csa', 'CsaV3_5G003750' => 'csa', 'CsaV3_6G036620' => 'csa', 'CSS0002288' => 'camsi', 'CSS0011250' => 'camsi', 'CSS0021619' => 'camsi', 'CSS0046701' => 'camsi', 'DCAR_006420' => 'dca', 'DCAR_006865' => 'dca', 'DCAR_008558' => 'dca', 'DCAR_028754' => 'dca', 'DCAR_028755' => 'dca', 'Dinv31218' => 'din', 'Dinv32371' => 'din', 'Dinv34250' => 'din', 'Dinv37156' => 'din', 'Dinv43704' => 'din', 'Duzib093G1811' => 'dzi', 'Duzib106G1622' => 'dzi', 'Duzib114G0504' => 'dzi', 'Duzib128G0338' => 'dzi', 'Duzib128G1577' => 'dzi', 'Duzib133G0104' => 'dzi', 'Duzib133G1080' => 'dzi', 'Duzib138G0324' => 'dzi', 'Duzib138G0394' => 'dzi', 'Duzib205G0122' => 'dzi', 'Duzib268G1020' => 'dzi', 'Duzib268G1359' => 'dzi', 'ECA232G3929' => 'eca', 'ECA236G2210' => 'eca', 'ECA236G2287' => 'eca', 'ECA240G4568' => 'eca', 'ECA247G0894' => 'eca', 'EL10Ac1g00200' => 'bvu', 'EL10Ac1g00886' => 'bvu', 'EL10As1g23091' => 'bvu', 'EL10As1g23092' => 'bvu', 'Eucgr.A01284' => 'egr', 'Eucgr.A01285' => 'egr', 'Eucgr.D02456' => 'egr', 'Eucgr.E00018' => 'egr', 'Eucgr.E01439' => 'egr', 'Eucgr.G02859' => 'egr', 'FAN01G0168' => 'fan', 'FAN01G0453' => 'fan', 'FAN01G2761' => 'fan', 'FAN02G1239' => 'fan', 'FAN03G0645' => 'fan', 'FAN03G2707' => 'fan', 'FAN03G2978' => 'fan', 'FAN04G0227' => 'fan', 'FAN06G0091' => 'fan', 'FAN06G1418' => 'fan', 'FAN06G1512' => 'fan', 'FAN06G1986' => 'fan', 'FAN06G2905' => 'fan', 'FAN06G4325' => 'fan', 'FAN08G0033' => 'fan', 'FAN09G0642' => 'fan', 'FAN10G1763' => 'fan', 'FAN10G2026' => 'fan', 'FAN10G2513' => 'fan', 'FAN10G3402' => 'fan', 'FAN10G3564' => 'fan', 'FAN10G3987' => 'fan', 'FAN13G1490' => 'fan', 'FAN14G5857' => 'fan', 'FAN18G1188' => 'fan', 'FvH4_5g00750' => 'fve', 'FvH4_6g13410' => 'fve', 'FvH4_7g11740' => 'fve', 'FvH4_7g17410' => 'fve', 'FvH4_7g18860' => 'fve', 'Glyma.01G099100' => 'gma', 'Glyma.01G142300' => 'gma', 'Glyma.03G025500' => 'gma', 'Glyma.03G069700' => 'gma', 'Glyma.03G260000' => 'gma', 'Glyma.09G269800' => 'gma', 'Glyma.10G208700' => 'gma', 'Glyma.18G220400' => 'gma', 'Glyma.20G182000' => 'gma', 'Gohir.A01G221726' => 'ghi', 'Gohir.A07G134600' => 'ghi', 'Gohir.A07G146000' => 'ghi', 'Gohir.A08G173900' => 'ghi', 'Gohir.A09G194900' => 'ghi', 'Gohir.A10G204100' => 'ghi', 'Gohir.A11G080600' => 'ghi', 'Gohir.A11G327500' => 'ghi', 'Gohir.A12G101800' => 'ghi', 'Gohir.D01G211200' => 'ghi', 'Gohir.D07G139200' => 'ghi', 'Gohir.D07G152100' => 'ghi', 'Gohir.D08G192600' => 'ghi', 'Gohir.D09G189200' => 'ghi', 'Gohir.D10G212000' => 'ghi', 'Gohir.D11G085200' => 'ghi', 'Gohir.D11G346400' => 'ghi', 'Gohir.D12G104800' => 'ghi', 'Gorai.001G151300' => 'gra', 'Gorai.001G174100' => 'gra', 'Gorai.002G257000' => 'gra', 'Gorai.004G202600' => 'gra', 'Gorai.007G090900' => 'gra', 'Gorai.007G376700' => 'gra', 'Gorai.008G114100' => 'gra', 'Gorai.011G237900' => 'gra', 'GSVIVG01005450001' => 'vvi', 'GSVIVG01016232001' => 'vvi', 'GSVIVG01026157001' => 'vvi', 'GSVIVG01027419001' => 'vvi', 'GSVIVG01027631001' => 'vvi', 'GSVIVG01034143001' => 'vvi', 'HanXRQChr03g0093921' => 'han', 'HanXRQChr04g0120001' => 'han', 'HanXRQChr04g0122561' => 'han', 'HanXRQChr09g0246851' => 'han', 'HanXRQChr10g0293311' => 'han', 'HanXRQChr13g0425231' => 'han', 'HanXRQChr16g0532571' => 'han', 'Haze_09050' => 'cav', 'Haze_15715' => 'cav', 'Haze_15716' => 'cav', 'Haze_16803' => 'cav', 'Haze_16850' => 'cav', 'Hma1.2p1_0301F.1_g118655' => 'hma', 'Hma1.2p1_0309F.1_g120590' => 'hma', 'Hma1.2p1_0936F.1_g238900' => 'hma', 'Hma1.2p1_3552F.1_g336740' => 'hma', 'HPP92_003520' => 'vpl', 'HPP92_006628' => 'vpl', 'HPP92_006645' => 'vpl', 'HPP92_014669' => 'vpl', 'HPP92_015077' => 'vpl', 'Hund16742' => 'sun', 'Hund17022' => 'sun', 'Lalb_Chr02g0152131' => 'lal', 'Lalb_Chr05g0225371' => 'lal', 'Lalb_Chr07g0189841' => 'lal', 'Lalb_Chr07g0192961' => 'lal', 'Lalb_Chr12g0208221' => 'lal', 'Lalb_Chr13g0291211' => 'lal', 'Lalb_Chr13g0291781' => 'lal', 'Lalb_Chr18g0044651' => 'lal', 'Lalb_Chr21g0313731' => 'lal', 'Lj1g0022533' => 'lja', 'Lj2A18T50' => 'lonja', 'Lj2A92G93' => 'lonja', 'Lj3A965T73' => 'lonja', 'Lj3g0000673' => 'lja', 'Lj3g0002666' => 'lja', 'Lj4g0016985' => 'lja', 'Lj5g0003625' => 'lja', 'Lj7A529G36' => 'lonja', 'Lj9A569T49' => 'lonja', 'Lj9A604T63' => 'lonja', 'Lsat_1_v5_gn_3_132060' => 'lsa', 'Lsat_1_v5_gn_4_68941' => 'lsa', 'Lsat_1_v5_gn_5_95580' => 'lsa', 'Lsat_1_v5_gn_7_161' => 'lsa', 'Lsat_1_v5_gn_7_7041' => 'lsa', 'Lsat_1_v5_gn_9_33481' => 'lsa', 'Lsat_1_v5_gn_9_68260' => 'lsa', 'Manes.01G073100' => 'mes', 'Manes.01G266300' => 'mes', 'Manes.02G033300' => 'mes', 'Manes.05G017900' => 'mes', 'Manes.05G046100' => 'mes', 'Manes.08G080900' => 'mes', 'Manes.10G049400' => 'mes', 'Mapoly0009s0186' => 'mpo', 'Mapoly0036s0118' => 'mpo', 'Mapoly0101s0046' => 'mpo', 'MBI04_g30218_MAGBIO' => 'mbi', 'MBI04_g35564_MAGBIO' => 'mbi', 'MBI12_g34011_MAGBIO' => 'mbi', 'MBI14_g04655_MAGBIO' => 'mbi', 'MCO07G653' => 'mco', 'MCO10G173' => 'mco', 'MD01G1087100' => 'mdo', 'MD01G1104200' => 'mdo', 'MD02G1205100' => 'mdo', 'MD04G1079200' => 'mdo', 'MD04G1131400' => 'mdo', 'MD07G1121600' => 'mdo', 'MD07G1157300' => 'mdo', 'MD07G1171000' => 'mdo', 'MD12G1144500' => 'mdo', 'Medtr1g094610' => 'mtr', 'Medtr4g021795' => 'mtr', 'Medtr4g023760' => 'mtr', 'Medtr7g118050' => 'mtr', 'MELO3C005582.2' => 'cme', 'MELO3C005989.2' => 'cme', 'MELO3C006192.2' => 'cme', 'MELO3C009248.2' => 'cme', 'MELO3C019817.2' => 'cme', 'Migut.B01625' => 'egut', 'Migut.B01915' => 'egut', 'Migut.F01721' => 'egut', 'Migut.J00314' => 'egut', 'MSTRG.20742' => 'ama', 'MSTRG.8134' => 'ama', 'Nitab4.5_0000096g0010' => 'nta', 'Nitab4.5_0000202g0030' => 'nta', 'Nitab4.5_0000216g0370' => 'nta', 'Nitab4.5_0000457g0230' => 'nta', 'Nitab4.5_0001702g0170' => 'nta', 'Nitab4.5_0003607g0010' => 'nta', 'Nitab4.5_0004917g0020' => 'nta', 'Nitab4.5_0007059g0010' => 'nta', 'Nitab4.5_0007184g0010' => 'nta', 'Nitab4.5_0007346g0020' => 'nta', 'Nn1g00410' => 'nnu', 'Nn1g01252' => 'nnu', 'Nn2g11168' => 'nnu', 'Nn2g13403' => 'nnu', 'Nn2g13760' => 'nnu', 'Nn4g26380' => 'nnu', 'Oeu000806.2' => 'oeu', 'Oeu005788.1' => 'oeu', 'Oeu006900.3' => 'oeu', 'Oeu007797.1' => 'oeu', 'Oeu011932.1' => 'oeu', 'Oeu022739.1' => 'oeu', 'Oeu037918.1' => 'oeu', 'Oeu055490.2' => 'oeu', 'Os01g0844400' => 'osa', 'Os02g0819100' => 'osa', 'Os03g0804300' => 'osa', 'Os05g0458000' => 'osa', 'Os07g0467800' => 'osa', 'Os12g0602200' => 'osa', 'Peaxi162Scf00013g03444' => 'pax', 'Peaxi162Scf00094g01120' => 'pax', 'Peaxi162Scf00191g01211' => 'pax', 'Peaxi162Scf00238g01110' => 'pax', 'Peaxi162Scf00330g00719' => 'pax', 'Peaxi162Scf00627g00018' => 'pax', 'PGR031G2686' => 'pgr', 'PGR042G0809' => 'pgr', 'PGR142G0193' => 'pgr', 'PGSC0003DMG400011066' => 'stu', 'PGSC0003DMG400012041' => 'stu', 'PGSC0003DMG400013678' => 'stu', 'PGSC0003DMG400023477' => 'stu', 'PGSC0003DMG400025956' => 'stu', 'PGSC0003DMG401019151' => 'stu', 'Phvul.006G116400' => 'pvu', 'Phvul.007G097300' => 'pvu', 'Phvul.010G015000' => 'pvu', 'Phvul.010G083900' => 'pvu', 'Potri.001G117100' => 'ptr', 'Potri.002G147300' => 'ptr', 'Potri.003G115600' => 'ptr', 'Potri.006G087400' => 'ptr', 'Potri.010G226100' => 'ptr', 'Potri.014G069200' => 'ptr', 'Potri.014G104000' => 'ptr', 'Potri.016G100200' => 'ptr', 'Pp3c10_20450' => 'ppa', 'Pp3c1_42400' => 'ppa', 'Pp3c3_24390' => 'ppa', 'Pp3c3_2860' => 'ppa', 'PRCOL_00003193' => 'pco', 'Prupe.2G144500' => 'ppe', 'Prupe.2G195700' => 'ppe', 'Prupe.2G209800' => 'ppe', 'Prupe.5G080000' => 'ppe', 'Prupe.6G257900' => 'ppe', 'Psat3g001160' => 'psa', 'Psat6g181880' => 'psa', 'Psat7g233720' => 'psa', 'PSO063G7587' => 'pso', 'PSO339G2145' => 'pso', 'PSO339G3369' => 'pso', 'PSO478G2747' => 'pso', 'PSO513G0140' => 'pso', 'PSO782G1614' => 'pso', 'PSO782G4889' => 'pso', 'PSO782G5485' => 'pso', 'PSO801G0241' => 'pso', 'QL07p048854' => 'qlo', 'QL08p046745' => 'qlo', 'QL08p052606' => 'qlo', 'QL08p053414' => 'qlo', 'QL08p054868' => 'qlo', 'RcHm_v2.0_Chr1g0350251' => 'rch', 'RcHm_v2.0_Chr1g0360851' => 'rch', 'RcHm_v2.0_Chr1g0362791' => 'rch', 'RcHm_v2.0_Chr3g0466281' => 'rch', 'RcHm_v2.0_Chr7g0201481' => 'rch', 'Rhsim01G0148600' => 'rsi', 'Rhsim05G0194400' => 'rsi', 'Rhsim07G0000700' => 'rsi', 'Rhsim07G0000800' => 'rsi', 'Rhsim07G0027900' => 'rsi', 'Rhsim09G0149500' => 'rsi', 'RhsimUnG0186900' => 'rsi', 'Sabra01G0089900' => 'sbr', 'Sabra02G0114700' => 'sbr', 'Sabra02G0116300' => 'sbr', 'Sabra03G0080100' => 'sbr', 'Sabra08G0024300' => 'sbr', 'Sabra10G0174300' => 'sbr', 'Sabra14G0048900' => 'sbr', 'Sabra14G0076500' => 'sbr', 'SalBow5G2513' => 'sbo', 'Sc01g0002300' => 'sci', 'Sc01g0004450' => 'sci', 'Sc06g0001680' => 'sci', 'Sc23g0003580' => 'sci', 'Sed0000913' => 'sed', 'Sed0001655' => 'sed', 'Sed0007745' => 'sed', 'Sed0010951' => 'sed', 'Sed0017599' => 'sed', 'Sed0021405' => 'sed', 'Sed0022810' => 'sed', 'SEGI_07099' => 'sgi', 'SEGI_11931' => 'sgi', 'SEGI_13187' => 'sgi', 'SEGI_29958' => 'sgi', 'SEGI_36351' => 'sgi', 'SGA_v2.0_scaffold126G33770' => 'sas', 'SGA_v2.0_scaffold153G37003' => 'sas', 'SGA_v2.0_scaffold2G01359' => 'sas', 'SGA_v2.0_scaffold5G03064' => 'sas', 'SGA_v2.0_scaffold95G28903' => 'sas', 'SHI12701' => 'shi', 'SHI26410' => 'shi', 'SHI38997' => 'shi', 'SHI53759' => 'shi', 'SHI53886' => 'shi', 'SHI54714' => 'shi', 'SMO011G0041' => 'smo', 'SMO146G0251' => 'smo', 'SMO160G0004' => 'smo', 'SMO174G0057' => 'smo', 'SMO244G0089' => 'smo', 'SMO296G0011' => 'smo', 'Solyc01g091280.3' => 'sly', 'Solyc05g047610.3' => 'sly', 'Solyc05g047640.3' => 'sly', 'Solyc05g055630.3' => 'sly', 'Solyc10g018160.2' => 'sly', 'Solyc10g084820.2' => 'sly', 'Solyc10g086565.2' => 'sly', 'Sopen01g037030' => 'spe', 'Sopen05g027920' => 'spe', 'Sopen05g034070' => 'spe', 'Sopen10g007260' => 'spe', 'Sopen10g034260' => 'spe', 'Sopen10g035950' => 'spe', 'Sp3g07710' => 'spa', 'Sp4g27420' => 'spa', 'Sp5g02450' => 'spa', 'Sp6g01280' => 'spa', 'Sp6g38480' => 'spa', 'Sp7g20780' => 'spa', 'TAR374G1413' => 'tar', 'TAR623G1777' => 'tar', 'TAR629G2370' => 'tar', 'TAR633G1759' => 'tar', 'TAR636G3387' => 'tar', 'THA.LOC104802447' => 'tha', 'THA.LOC104813916' => 'tha', 'THA.LOC104816423' => 'tha', 'THA.LOC104817246' => 'tha', 'THA.LOC104825895' => 'tha', 'Thecc.01G335200' => 'tca', 'Thecc.01G377400' => 'tca', 'Thecc.03G262200' => 'tca', 'Thecc.05G036800' => 'tca', 'Thecc.10G080500' => 'tca', 'Thecc.10G080800' => 'tca', 'Thhalv10001560m.g' => 'esa', 'Thhalv10006120m.g' => 'esa', 'Thhalv10014375m.g' => 'esa', 'Thhalv10021264m.g' => 'esa', 'Thhalv10028856m.g' => 'esa', 'TPR.G1914' => 'tpr', 'TPR.G4757' => 'tpr', 'TPR.G5595' => 'tpr', 'TWI14G0952' => 'twi', 'TWI14G1307' => 'twi', 'TWI38G2143' => 'twi', 'TWI59G0826' => 'twi', 'TWI77G0527' => 'twi', 'TWI81G0150' => 'twi', 'unitig_21.g21018' => 'ugi', 'unitig_26.g9725' => 'ugi', 'unitig_744.g24653' => 'ugi', 'unitig_749.g13778' => 'ugi', 'unitig_899.g15035' => 'ugi', 'vmacro04296' => 'vma', 'vmacro04852' => 'vma', 'vmacro13404' => 'vma', 'vmacro20169' => 'vma', 'vmacro21014' => 'vma', 'VMungo0331G0237' => 'vmu', 'VMungo0331G0706' => 'vmu', 'VMungo0331G1361' => 'vmu', 'VMungo0331G1489' => 'vmu', 'VMungo0540G1037' => 'vmu', 'VMungo0720G2487' => 'vmu', 'VMungo0720G2721' => 'vmu', 'Zm00001eb086860' => 'zma', 'Zm00001eb104760' => 'zma', 'Zm00001eb148220' => 'zma', 'Zm00001eb259030' => 'zma', 'Zm00001eb289590' => 'zma', 'Zm00001eb420150' => 'zma' ), 'gf_id' => 'HOM05D000968', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000968' ), 'data_identifier' => 'HOM05D000968', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000968', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p31690' => 'bna', 'A03p36040' => 'bna', 'A03p53730' => 'bna', 'A04p01410' => 'bna', 'A05p05420' => 'bna', 'A05p39630' => 'bna', 'A05p39640' => 'bna', 'A09p00970' => 'bna', 'A09p53060' => 'bna', 'A10p31890' => 'bna', 'Aa31LG10G15040' => 'aar', 'Aa31LG1G21090' => 'aar', 'Aa31LG1G26900' => 'aar', 'Aa31LG3G1820' => 'aar', 'Aa31LG5G1100' => 'aar', 'Aa31LG6G4740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2265' => 'aag', 'Actinidia07998' => 'ach', 'Actinidia11266' => 'ach', 'Actinidia12682' => 'ach', 'Actinidia26479' => 'ach', 'Actinidia31406' => 'ach', 'Actinidia32437' => 'ach', 'Actinidia38862' => 'ach', 'Ah.05g174230' => 'amhyb', 'Ah.05g179070' => 'amhyb', 'Ah.05g179090' => 'amhyb', 'Ah.12g059950' => 'amhyb', 'AL3G20480' => 'aly', 'AL4G44520' => 'aly', 'AL5G43110' => 'aly', 'AL6G13890' => 'aly', 'AL6G52620' => 'aly', 'AL7G30830' => 'aly', 'Aqoxy1G00899' => 'aox', 'Aqoxy5G04333' => 'aox', 'Aqoxy7G00641' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3IZ0NN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4EF6AW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W9P8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79GA3M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C43NQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFCU6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G95YVJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCHK29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LU1UG8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX91RN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGB4B1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8DA0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9H7JI' => 'arhy', 'AT3G09320' => 'ath', 'AT3G60800' => 'ath', 'AT4G00840' => 'ath', 'AT4G22750' => 'ath', 'AT5G04270' => 'ath', 'ATR0090G003' => 'atr', 'ATR0559G349' => 'atr', 'ATR0680G261' => 'atr', 'ATR0810G048' => 'atr', 'Atru.chr12.831' => 'acertr', 'Atru.chr5.303' => 'acertr', 'Atru.chr5.748' => 'acertr', 'Atru.chr8.1999' => 'acertr', 'Atru.chr9.1436' => 'acertr', 'AUR62004211' => 'cqu', 'AUR62004548' => 'cqu', 'AUR62013637' => 'cqu', 'AUR62022662' => 'cqu', 'AUR62025777' => 'cqu', 'AUR62042386' => 'cqu', 'BcaB01g02310' => 'bca', 'BcaB01g06062' => 'bca', 'BcaB02g08975' => 'bca', 'BcaB02g08980' => 'bca', 'BcaC01g04228' => 'bca', 'BcaC01g06830' => 'bca', 'BcaC02g10186' => 'bca', 'BcaC02g12214' => 'bca', 'BcaC04g24101' => 'bca', 'BcaC05g29520' => 'bca', 'BcaC05g29661' => 'bca', 'BcaC06g32130' => 'bca', 'BcaC06g32131' => 'bca', 'BcaC07g40601' => 'bca', 'BcaC07g42641' => 'bca', 'BcaNung01038' => 'bca', 'BcaNung01676' => 'bca', 'BcaNung02480' => 'bca', 'BcaNung07376' => 'bca', 'BolC3t16146H' => 'bol', 'BolC3t16637H' => 'bol', 'BolC4t22257H' => 'bol', 'BolC4t24728H' => 'bol', 'BolC5t34517H' => 'bol', 'BolC7t45703H' => 'bol', 'BolC8t51166H' => 'bol', 'BolC9t53038H' => 'bol', 'BolC9t60000H' => 'bol', 'BraA01t01345Z' => 'bra', 'BraA01t01346Z' => 'bra', 'BraA01t01348Z' => 'bra', 'BraA03t12347Z' => 'bra', 'BraA03t12775Z' => 'bra', 'BraA03t14439Z' => 'bra', 'BraA04t15860Z' => 'bra', 'BraA05t19511Z' => 'bra', 'BraA05t22746Z' => 'bra', 'BraA09t35767Z' => 'bra', 'BraA09t40732Z' => 'bra', 'BraA10t45233Z' => 'bra', 'C03p38720' => 'bna', 'C03p43680' => 'bna', 'C04p06350' => 'bna', 'C04p31800' => 'bna', 'C05p58680' => 'bna', 'C07p52110' => 'bna', 'C08p35760' => 'bna', 'C09p01050' => 'bna', 'C09p72600' => 'bna', 'CAN.G106.2' => 'can', 'CAN.G1482.1' => 'can', 'CAN.G324.12' => 'can', 'CAN.G388.20' => 'can', 'CAN.G412.7' => 'can', 'CAN.G694.32' => 'can', 'CAN.G92.12' => 'can', 'CANSAT11G2353' => 'cansat', 'CANSAT21G1398' => 'cansat', 'CANSAT56G2456' => 'cansat', 'CANSAT56G3031' => 'cansat', 'CANSAT56G4539' => 'cansat', 'CARHR083680' => 'chi', 'CARHR171190' => 'chi', 'CARHR209010' => 'chi', 'CARHR229680' => 'chi', 'CARHR249490' => 'chi', 'Carub.0003s0844' => 'cru', 'Carub.0005s2755' => 'cru', 'Carub.0006s0322' => 'cru', 'Carub.0006s3586' => 'cru', 'Carub.0007s1855' => 'cru', 'Ca_07808_v3' => 'car', 'Ca_09535_v3' => 'car', 'Ca_10548_v3' => 'car', 'Ca_19913_v3' => 'car', 'Ca_19916_v3' => 'car', 'Ca_19975_v3' => 'car', 'CBR_g22876' => 'cbr', 'CBR_g22879' => 'cbr', 'CBR_g38491' => 'cbr', 'CBR_g54185' => 'cbr', 'CBR_g54190' => 'cbr', 'Cc02_g11020' => 'ccan', 'Cc02_g23920' => 'ccan', 'Cc02_g39860' => 'ccan', 'Cc02_g39870' => 'ccan', 'Cc03_g06760' => 'ccan', 'Cc06_g02450' => 'ccan', 'Cc09_g09450' => 'ccan', 'CDE02G1959' => 'cde', 'CDE04G0600' => 'cde', 'CDE07G1996' => 'cde', 'CDE07G2078' => 'cde', 'CDE11G0611' => 'cde', 'Cfa001683' => 'cfa', 'Cfa001734' => 'cfa', 'Cfa001737' => 'cfa', 'Cfa003751' => 'cfa', 'Cfa012019' => 'cfa', 'Cfa017353' => 'cfa', 'Cfa017732' => 'cfa', 'Cfa022464' => 'cfa', 'Ciclev10012400m.g' => 'ccl', 'Ciclev10021242m.g' => 'ccl', 'Ciclev10021302m.g' => 'ccl', 'Ciclev10021463m.g' => 'ccl', 'Ciclev10032359m.g' => 'ccl', 'CiPaw.01G081000' => 'cil', 'CiPaw.01G262500' => 'cil', 'CiPaw.01G269800' => 'cil', 'CiPaw.02G168400' => 'cil', 'CiPaw.05G119500' => 'cil', 'CiPaw.11G147300' => 'cil', 'ClCG01G003630' => 'cla', 'ClCG05G000510' => 'cla', 'ClCG05G002300' => 'cla', 'ClCG08G007650' => 'cla', 'ClCG10G021250' => 'cla', 'COL.COLO4_06218' => 'col', 'COL.COLO4_12538' => 'col', 'COL.COLO4_14775' => 'col', 'COL.COLO4_23875' => 'col', 'Cpa.g.sc141.16' => 'cpa', 'Cpa.g.sc169.16' => 'cpa', 'Cpa.g.sc244.4' => 'cpa', 'Cpa.g.sc244.5' => 'cpa', 'Cpa.g.sc29.87' => 'cpa', 'Cpa.g.sc53.115' => 'cpa', 'Cre03.g207502' => 'cre', 'Cre06.g277000' => 'cre', 'Cre09.g394050' => 'cre', 'CsaV3_3G007680' => 'csa', 'CsaV3_3G009710' => 'csa', 'CsaV3_3G034790' => 'csa', 'CsaV3_5G003750' => 'csa', 'CsaV3_6G036620' => 'csa', 'CSS0002288' => 'camsi', 'CSS0011250' => 'camsi', 'CSS0021619' => 'camsi', 'CSS0046701' => 'camsi', 'DCAR_006420' => 'dca', 'DCAR_006865' => 'dca', 'DCAR_008558' => 'dca', 'DCAR_028754' => 'dca', 'DCAR_028755' => 'dca', 'Dinv31218' => 'din', 'Dinv32371' => 'din', 'Dinv34250' => 'din', 'Dinv37156' => 'din', 'Dinv43704' => 'din', 'Duzib093G1811' => 'dzi', 'Duzib106G1622' => 'dzi', 'Duzib114G0504' => 'dzi', 'Duzib128G0338' => 'dzi', 'Duzib128G1577' => 'dzi', 'Duzib133G0104' => 'dzi', 'Duzib133G1080' => 'dzi', 'Duzib138G0324' => 'dzi', 'Duzib138G0394' => 'dzi', 'Duzib205G0122' => 'dzi', 'Duzib268G1020' => 'dzi', 'Duzib268G1359' => 'dzi', 'ECA232G3929' => 'eca', 'ECA236G2210' => 'eca', 'ECA236G2287' => 'eca', 'ECA240G4568' => 'eca', 'ECA247G0894' => 'eca', 'EL10Ac1g00200' => 'bvu', 'EL10Ac1g00886' => 'bvu', 'EL10As1g23091' => 'bvu', 'EL10As1g23092' => 'bvu', 'Eucgr.A01284' => 'egr', 'Eucgr.A01285' => 'egr', 'Eucgr.D02456' => 'egr', 'Eucgr.E00018' => 'egr', 'Eucgr.E01439' => 'egr', 'Eucgr.G02859' => 'egr', 'FAN01G0168' => 'fan', 'FAN01G0453' => 'fan', 'FAN01G2761' => 'fan', 'FAN02G1239' => 'fan', 'FAN03G0645' => 'fan', 'FAN03G2707' => 'fan', 'FAN03G2978' => 'fan', 'FAN04G0227' => 'fan', 'FAN06G0091' => 'fan', 'FAN06G1418' => 'fan', 'FAN06G1512' => 'fan', 'FAN06G1986' => 'fan', 'FAN06G2905' => 'fan', 'FAN06G4325' => 'fan', 'FAN08G0033' => 'fan', 'FAN09G0642' => 'fan', 'FAN10G1763' => 'fan', 'FAN10G2026' => 'fan', 'FAN10G2513' => 'fan', 'FAN10G3402' => 'fan', 'FAN10G3564' => 'fan', 'FAN10G3987' => 'fan', 'FAN13G1490' => 'fan', 'FAN14G5857' => 'fan', 'FAN18G1188' => 'fan', 'FvH4_5g00750' => 'fve', 'FvH4_6g13410' => 'fve', 'FvH4_7g11740' => 'fve', 'FvH4_7g17410' => 'fve', 'FvH4_7g18860' => 'fve', 'Glyma.01G099100' => 'gma', 'Glyma.01G142300' => 'gma', 'Glyma.03G025500' => 'gma', 'Glyma.03G069700' => 'gma', 'Glyma.03G260000' => 'gma', 'Glyma.09G269800' => 'gma', 'Glyma.10G208700' => 'gma', 'Glyma.18G220400' => 'gma', 'Glyma.20G182000' => 'gma', 'Gohir.A01G221726' => 'ghi', 'Gohir.A07G134600' => 'ghi', 'Gohir.A07G146000' => 'ghi', 'Gohir.A08G173900' => 'ghi', 'Gohir.A09G194900' => 'ghi', 'Gohir.A10G204100' => 'ghi', 'Gohir.A11G080600' => 'ghi', 'Gohir.A11G327500' => 'ghi', 'Gohir.A12G101800' => 'ghi', 'Gohir.D01G211200' => 'ghi', 'Gohir.D07G139200' => 'ghi', 'Gohir.D07G152100' => 'ghi', 'Gohir.D08G192600' => 'ghi', 'Gohir.D09G189200' => 'ghi', 'Gohir.D10G212000' => 'ghi', 'Gohir.D11G085200' => 'ghi', 'Gohir.D11G346400' => 'ghi', 'Gohir.D12G104800' => 'ghi', 'Gorai.001G151300' => 'gra', 'Gorai.001G174100' => 'gra', 'Gorai.002G257000' => 'gra', 'Gorai.004G202600' => 'gra', 'Gorai.007G090900' => 'gra', 'Gorai.007G376700' => 'gra', 'Gorai.008G114100' => 'gra', 'Gorai.011G237900' => 'gra', 'GSVIVG01005450001' => 'vvi', 'GSVIVG01016232001' => 'vvi', 'GSVIVG01026157001' => 'vvi', 'GSVIVG01027419001' => 'vvi', 'GSVIVG01027631001' => 'vvi', 'GSVIVG01034143001' => 'vvi', 'HanXRQChr03g0093921' => 'han', 'HanXRQChr04g0120001' => 'han', 'HanXRQChr04g0122561' => 'han', 'HanXRQChr09g0246851' => 'han', 'HanXRQChr10g0293311' => 'han', 'HanXRQChr13g0425231' => 'han', 'HanXRQChr16g0532571' => 'han', 'Haze_09050' => 'cav', 'Haze_15715' => 'cav', 'Haze_15716' => 'cav', 'Haze_16803' => 'cav', 'Haze_16850' => 'cav', 'Hma1.2p1_0301F.1_g118655' => 'hma', 'Hma1.2p1_0309F.1_g120590' => 'hma', 'Hma1.2p1_0936F.1_g238900' => 'hma', 'Hma1.2p1_3552F.1_g336740' => 'hma', 'HPP92_003520' => 'vpl', 'HPP92_006628' => 'vpl', 'HPP92_006645' => 'vpl', 'HPP92_014669' => 'vpl', 'HPP92_015077' => 'vpl', 'Hund16742' => 'sun', 'Hund17022' => 'sun', 'Lalb_Chr02g0152131' => 'lal', 'Lalb_Chr05g0225371' => 'lal', 'Lalb_Chr07g0189841' => 'lal', 'Lalb_Chr07g0192961' => 'lal', 'Lalb_Chr12g0208221' => 'lal', 'Lalb_Chr13g0291211' => 'lal', 'Lalb_Chr13g0291781' => 'lal', 'Lalb_Chr18g0044651' => 'lal', 'Lalb_Chr21g0313731' => 'lal', 'Lj1g0022533' => 'lja', 'Lj2A18T50' => 'lonja', 'Lj2A92G93' => 'lonja', 'Lj3A965T73' => 'lonja', 'Lj3g0000673' => 'lja', 'Lj3g0002666' => 'lja', 'Lj4g0016985' => 'lja', 'Lj5g0003625' => 'lja', 'Lj7A529G36' => 'lonja', 'Lj9A569T49' => 'lonja', 'Lj9A604T63' => 'lonja', 'Lsat_1_v5_gn_3_132060' => 'lsa', 'Lsat_1_v5_gn_4_68941' => 'lsa', 'Lsat_1_v5_gn_5_95580' => 'lsa', 'Lsat_1_v5_gn_7_161' => 'lsa', 'Lsat_1_v5_gn_7_7041' => 'lsa', 'Lsat_1_v5_gn_9_33481' => 'lsa', 'Lsat_1_v5_gn_9_68260' => 'lsa', 'Manes.01G073100' => 'mes', 'Manes.01G266300' => 'mes', 'Manes.02G033300' => 'mes', 'Manes.05G017900' => 'mes', 'Manes.05G046100' => 'mes', 'Manes.08G080900' => 'mes', 'Manes.10G049400' => 'mes', 'Mapoly0009s0186' => 'mpo', 'Mapoly0036s0118' => 'mpo', 'Mapoly0101s0046' => 'mpo', 'MBI04_g30218_MAGBIO' => 'mbi', 'MBI04_g35564_MAGBIO' => 'mbi', 'MBI12_g34011_MAGBIO' => 'mbi', 'MBI14_g04655_MAGBIO' => 'mbi', 'MCO07G653' => 'mco', 'MCO10G173' => 'mco', 'MD01G1087100' => 'mdo', 'MD01G1104200' => 'mdo', 'MD02G1205100' => 'mdo', 'MD04G1079200' => 'mdo', 'MD04G1131400' => 'mdo', 'MD07G1121600' => 'mdo', 'MD07G1157300' => 'mdo', 'MD07G1171000' => 'mdo', 'MD12G1144500' => 'mdo', 'Medtr1g094610' => 'mtr', 'Medtr4g021795' => 'mtr', 'Medtr4g023760' => 'mtr', 'Medtr7g118050' => 'mtr', 'MELO3C005582.2' => 'cme', 'MELO3C005989.2' => 'cme', 'MELO3C006192.2' => 'cme', 'MELO3C009248.2' => 'cme', 'MELO3C019817.2' => 'cme', 'Migut.B01625' => 'egut', 'Migut.B01915' => 'egut', 'Migut.F01721' => 'egut', 'Migut.J00314' => 'egut', 'MSTRG.20742' => 'ama', 'MSTRG.8134' => 'ama', 'Nitab4.5_0000096g0010' => 'nta', 'Nitab4.5_0000202g0030' => 'nta', 'Nitab4.5_0000216g0370' => 'nta', 'Nitab4.5_0000457g0230' => 'nta', 'Nitab4.5_0001702g0170' => 'nta', 'Nitab4.5_0003607g0010' => 'nta', 'Nitab4.5_0004917g0020' => 'nta', 'Nitab4.5_0007059g0010' => 'nta', 'Nitab4.5_0007184g0010' => 'nta', 'Nitab4.5_0007346g0020' => 'nta', 'Nn1g00410' => 'nnu', 'Nn1g01252' => 'nnu', 'Nn2g11168' => 'nnu', 'Nn2g13403' => 'nnu', 'Nn2g13760' => 'nnu', 'Nn4g26380' => 'nnu', 'Oeu000806.2' => 'oeu', 'Oeu005788.1' => 'oeu', 'Oeu006900.3' => 'oeu', 'Oeu007797.1' => 'oeu', 'Oeu011932.1' => 'oeu', 'Oeu022739.1' => 'oeu', 'Oeu037918.1' => 'oeu', 'Oeu055490.2' => 'oeu', 'Os01g0844400' => 'osa', 'Os02g0819100' => 'osa', 'Os03g0804300' => 'osa', 'Os05g0458000' => 'osa', 'Os07g0467800' => 'osa', 'Os12g0602200' => 'osa', 'Peaxi162Scf00013g03444' => 'pax', 'Peaxi162Scf00094g01120' => 'pax', 'Peaxi162Scf00191g01211' => 'pax', 'Peaxi162Scf00238g01110' => 'pax', 'Peaxi162Scf00330g00719' => 'pax', 'Peaxi162Scf00627g00018' => 'pax', 'PGR031G2686' => 'pgr', 'PGR042G0809' => 'pgr', 'PGR142G0193' => 'pgr', 'PGSC0003DMG400011066' => 'stu', 'PGSC0003DMG400012041' => 'stu', 'PGSC0003DMG400013678' => 'stu', 'PGSC0003DMG400023477' => 'stu', 'PGSC0003DMG400025956' => 'stu', 'PGSC0003DMG401019151' => 'stu', 'Phvul.006G116400' => 'pvu', 'Phvul.007G097300' => 'pvu', 'Phvul.010G015000' => 'pvu', 'Phvul.010G083900' => 'pvu', 'Potri.001G117100' => 'ptr', 'Potri.002G147300' => 'ptr', 'Potri.003G115600' => 'ptr', 'Potri.006G087400' => 'ptr', 'Potri.010G226100' => 'ptr', 'Potri.014G069200' => 'ptr', 'Potri.014G104000' => 'ptr', 'Potri.016G100200' => 'ptr', 'Pp3c10_20450' => 'ppa', 'Pp3c1_42400' => 'ppa', 'Pp3c3_24390' => 'ppa', 'Pp3c3_2860' => 'ppa', 'PRCOL_00003193' => 'pco', 'Prupe.2G144500' => 'ppe', 'Prupe.2G195700' => 'ppe', 'Prupe.2G209800' => 'ppe', 'Prupe.5G080000' => 'ppe', 'Prupe.6G257900' => 'ppe', 'Psat3g001160' => 'psa', 'Psat6g181880' => 'psa', 'Psat7g233720' => 'psa', 'PSO063G7587' => 'pso', 'PSO339G2145' => 'pso', 'PSO339G3369' => 'pso', 'PSO478G2747' => 'pso', 'PSO513G0140' => 'pso', 'PSO782G1614' => 'pso', 'PSO782G4889' => 'pso', 'PSO782G5485' => 'pso', 'PSO801G0241' => 'pso', 'QL07p048854' => 'qlo', 'QL08p046745' => 'qlo', 'QL08p052606' => 'qlo', 'QL08p053414' => 'qlo', 'QL08p054868' => 'qlo', 'RcHm_v2.0_Chr1g0350251' => 'rch', 'RcHm_v2.0_Chr1g0360851' => 'rch', 'RcHm_v2.0_Chr1g0362791' => 'rch', 'RcHm_v2.0_Chr3g0466281' => 'rch', 'RcHm_v2.0_Chr7g0201481' => 'rch', 'Rhsim01G0148600' => 'rsi', 'Rhsim05G0194400' => 'rsi', 'Rhsim07G0000700' => 'rsi', 'Rhsim07G0000800' => 'rsi', 'Rhsim07G0027900' => 'rsi', 'Rhsim09G0149500' => 'rsi', 'RhsimUnG0186900' => 'rsi', 'Sabra01G0089900' => 'sbr', 'Sabra02G0114700' => 'sbr', 'Sabra02G0116300' => 'sbr', 'Sabra03G0080100' => 'sbr', 'Sabra08G0024300' => 'sbr', 'Sabra10G0174300' => 'sbr', 'Sabra14G0048900' => 'sbr', 'Sabra14G0076500' => 'sbr', 'SalBow5G2513' => 'sbo', 'Sc01g0002300' => 'sci', 'Sc01g0004450' => 'sci', 'Sc06g0001680' => 'sci', 'Sc23g0003580' => 'sci', 'Sed0000913' => 'sed', 'Sed0001655' => 'sed', 'Sed0007745' => 'sed', 'Sed0010951' => 'sed', 'Sed0017599' => 'sed', 'Sed0021405' => 'sed', 'Sed0022810' => 'sed', 'SEGI_07099' => 'sgi', 'SEGI_11931' => 'sgi', 'SEGI_13187' => 'sgi', 'SEGI_29958' => 'sgi', 'SEGI_36351' => 'sgi', 'SGA_v2.0_scaffold126G33770' => 'sas', 'SGA_v2.0_scaffold153G37003' => 'sas', 'SGA_v2.0_scaffold2G01359' => 'sas', 'SGA_v2.0_scaffold5G03064' => 'sas', 'SGA_v2.0_scaffold95G28903' => 'sas', 'SHI12701' => 'shi', 'SHI26410' => 'shi', 'SHI38997' => 'shi', 'SHI53759' => 'shi', 'SHI53886' => 'shi', 'SHI54714' => 'shi', 'SMO011G0041' => 'smo', 'SMO146G0251' => 'smo', 'SMO160G0004' => 'smo', 'SMO174G0057' => 'smo', 'SMO244G0089' => 'smo', 'SMO296G0011' => 'smo', 'Solyc01g091280.3' => 'sly', 'Solyc05g047610.3' => 'sly', 'Solyc05g047640.3' => 'sly', 'Solyc05g055630.3' => 'sly', 'Solyc10g018160.2' => 'sly', 'Solyc10g084820.2' => 'sly', 'Solyc10g086565.2' => 'sly', 'Sopen01g037030' => 'spe', 'Sopen05g027920' => 'spe', 'Sopen05g034070' => 'spe', 'Sopen10g007260' => 'spe', 'Sopen10g034260' => 'spe', 'Sopen10g035950' => 'spe', 'Sp3g07710' => 'spa', 'Sp4g27420' => 'spa', 'Sp5g02450' => 'spa', 'Sp6g01280' => 'spa', 'Sp6g38480' => 'spa', 'Sp7g20780' => 'spa', 'TAR374G1413' => 'tar', 'TAR623G1777' => 'tar', 'TAR629G2370' => 'tar', 'TAR633G1759' => 'tar', 'TAR636G3387' => 'tar', 'THA.LOC104802447' => 'tha', 'THA.LOC104813916' => 'tha', 'THA.LOC104816423' => 'tha', 'THA.LOC104817246' => 'tha', 'THA.LOC104825895' => 'tha', 'Thecc.01G335200' => 'tca', 'Thecc.01G377400' => 'tca', 'Thecc.03G262200' => 'tca', 'Thecc.05G036800' => 'tca', 'Thecc.10G080500' => 'tca', 'Thecc.10G080800' => 'tca', 'Thhalv10001560m.g' => 'esa', 'Thhalv10006120m.g' => 'esa', 'Thhalv10014375m.g' => 'esa', 'Thhalv10021264m.g' => 'esa', 'Thhalv10028856m.g' => 'esa', 'TPR.G1914' => 'tpr', 'TPR.G4757' => 'tpr', 'TPR.G5595' => 'tpr', 'TWI14G0952' => 'twi', 'TWI14G1307' => 'twi', 'TWI38G2143' => 'twi', 'TWI59G0826' => 'twi', 'TWI77G0527' => 'twi', 'TWI81G0150' => 'twi', 'unitig_21.g21018' => 'ugi', 'unitig_26.g9725' => 'ugi', 'unitig_744.g24653' => 'ugi', 'unitig_749.g13778' => 'ugi', 'unitig_899.g15035' => 'ugi', 'vmacro04296' => 'vma', 'vmacro04852' => 'vma', 'vmacro13404' => 'vma', 'vmacro20169' => 'vma', 'vmacro21014' => 'vma', 'VMungo0331G0237' => 'vmu', 'VMungo0331G0706' => 'vmu', 'VMungo0331G1361' => 'vmu', 'VMungo0331G1489' => 'vmu', 'VMungo0540G1037' => 'vmu', 'VMungo0720G2487' => 'vmu', 'VMungo0720G2721' => 'vmu', 'Zm00001eb086860' => 'zma', 'Zm00001eb104760' => 'zma', 'Zm00001eb148220' => 'zma', 'Zm00001eb259030' => 'zma', 'Zm00001eb289590' => 'zma', 'Zm00001eb420150' => 'zma' ) $gf_id = 'HOM05D000968' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000968' ) $data_identifier = 'HOM05D000968' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 19, 'bol' => (int) 9, 'bra' => (int) 12, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 5, 'ccan' => (int) 7, 'cde' => (int) 5, 'cfa' => (int) 8, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 4, 'dca' => (int) 5, 'din' => (int) 5, 'dzi' => (int) 12, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 25, 'fve' => (int) 5, 'gma' => (int) 9, 'ghi' => (int) 18, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 7, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 5, 'sun' => (int) 2, 'lal' => (int) 9, 'lja' => (int) 5, 'lonja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 9, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 2, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 3, 'stu' => (int) 6, 'pvu' => (int) 4, 'ptr' => (int) 8, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 3, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 1, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 5, 'sas' => (int) 5, 'shi' => (int) 6, 'smo' => (int) 6, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 3, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420150' $species_info = array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ) $local_species = 'qlo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000968', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p31690' => 'bna', 'A03p36040' => 'bna', 'A03p53730' => 'bna', 'A04p01410' => 'bna', 'A05p05420' => 'bna', 'A05p39630' => 'bna', 'A05p39640' => 'bna', 'A09p00970' => 'bna', 'A09p53060' => 'bna', 'A10p31890' => 'bna', 'Aa31LG10G15040' => 'aar', 'Aa31LG1G21090' => 'aar', 'Aa31LG1G26900' => 'aar', 'Aa31LG3G1820' => 'aar', 'Aa31LG5G1100' => 'aar', 'Aa31LG6G4740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2265' => 'aag', 'Actinidia07998' => 'ach', 'Actinidia11266' => 'ach', 'Actinidia12682' => 'ach', 'Actinidia26479' => 'ach', 'Actinidia31406' => 'ach', 'Actinidia32437' => 'ach', 'Actinidia38862' => 'ach', 'Ah.05g174230' => 'amhyb', 'Ah.05g179070' => 'amhyb', 'Ah.05g179090' => 'amhyb', 'Ah.12g059950' => 'amhyb', 'AL3G20480' => 'aly', 'AL4G44520' => 'aly', 'AL5G43110' => 'aly', 'AL6G13890' => 'aly', 'AL6G52620' => 'aly', 'AL7G30830' => 'aly', 'Aqoxy1G00899' => 'aox', 'Aqoxy5G04333' => 'aox', 'Aqoxy7G00641' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3IZ0NN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4EF6AW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W9P8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79GA3M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C43NQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFCU6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G95YVJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCHK29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LU1UG8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX91RN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGB4B1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8DA0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9H7JI' => 'arhy', 'AT3G09320' => 'ath', 'AT3G60800' => 'ath', 'AT4G00840' => 'ath', 'AT4G22750' => 'ath', 'AT5G04270' => 'ath', 'ATR0090G003' => 'atr', 'ATR0559G349' => 'atr', 'ATR0680G261' => 'atr', 'ATR0810G048' => 'atr', 'Atru.chr12.831' => 'acertr', 'Atru.chr5.303' => 'acertr', 'Atru.chr5.748' => 'acertr', 'Atru.chr8.1999' => 'acertr', 'Atru.chr9.1436' => 'acertr', 'AUR62004211' => 'cqu', 'AUR62004548' => 'cqu', 'AUR62013637' => 'cqu', 'AUR62022662' => 'cqu', 'AUR62025777' => 'cqu', 'AUR62042386' => 'cqu', 'BcaB01g02310' => 'bca', 'BcaB01g06062' => 'bca', 'BcaB02g08975' => 'bca', 'BcaB02g08980' => 'bca', 'BcaC01g04228' => 'bca', 'BcaC01g06830' => 'bca', 'BcaC02g10186' => 'bca', 'BcaC02g12214' => 'bca', 'BcaC04g24101' => 'bca', 'BcaC05g29520' => 'bca', 'BcaC05g29661' => 'bca', 'BcaC06g32130' => 'bca', 'BcaC06g32131' => 'bca', 'BcaC07g40601' => 'bca', 'BcaC07g42641' => 'bca', 'BcaNung01038' => 'bca', 'BcaNung01676' => 'bca', 'BcaNung02480' => 'bca', 'BcaNung07376' => 'bca', 'BolC3t16146H' => 'bol', 'BolC3t16637H' => 'bol', 'BolC4t22257H' => 'bol', 'BolC4t24728H' => 'bol', 'BolC5t34517H' => 'bol', 'BolC7t45703H' => 'bol', 'BolC8t51166H' => 'bol', 'BolC9t53038H' => 'bol', 'BolC9t60000H' => 'bol', 'BraA01t01345Z' => 'bra', 'BraA01t01346Z' => 'bra', 'BraA01t01348Z' => 'bra', 'BraA03t12347Z' => 'bra', 'BraA03t12775Z' => 'bra', 'BraA03t14439Z' => 'bra', 'BraA04t15860Z' => 'bra', 'BraA05t19511Z' => 'bra', 'BraA05t22746Z' => 'bra', 'BraA09t35767Z' => 'bra', 'BraA09t40732Z' => 'bra', 'BraA10t45233Z' => 'bra', 'C03p38720' => 'bna', 'C03p43680' => 'bna', 'C04p06350' => 'bna', 'C04p31800' => 'bna', 'C05p58680' => 'bna', 'C07p52110' => 'bna', 'C08p35760' => 'bna', 'C09p01050' => 'bna', 'C09p72600' => 'bna', 'CAN.G106.2' => 'can', 'CAN.G1482.1' => 'can', 'CAN.G324.12' => 'can', 'CAN.G388.20' => 'can', 'CAN.G412.7' => 'can', 'CAN.G694.32' => 'can', 'CAN.G92.12' => 'can', 'CANSAT11G2353' => 'cansat', 'CANSAT21G1398' => 'cansat', 'CANSAT56G2456' => 'cansat', 'CANSAT56G3031' => 'cansat', 'CANSAT56G4539' => 'cansat', 'CARHR083680' => 'chi', 'CARHR171190' => 'chi', 'CARHR209010' => 'chi', 'CARHR229680' => 'chi', 'CARHR249490' => 'chi', 'Carub.0003s0844' => 'cru', 'Carub.0005s2755' => 'cru', 'Carub.0006s0322' => 'cru', 'Carub.0006s3586' => 'cru', 'Carub.0007s1855' => 'cru', 'Ca_07808_v3' => 'car', 'Ca_09535_v3' => 'car', 'Ca_10548_v3' => 'car', 'Ca_19913_v3' => 'car', 'Ca_19916_v3' => 'car', 'Ca_19975_v3' => 'car', 'CBR_g22876' => 'cbr', 'CBR_g22879' => 'cbr', 'CBR_g38491' => 'cbr', 'CBR_g54185' => 'cbr', 'CBR_g54190' => 'cbr', 'Cc02_g11020' => 'ccan', 'Cc02_g23920' => 'ccan', 'Cc02_g39860' => 'ccan', 'Cc02_g39870' => 'ccan', 'Cc03_g06760' => 'ccan', 'Cc06_g02450' => 'ccan', 'Cc09_g09450' => 'ccan', 'CDE02G1959' => 'cde', 'CDE04G0600' => 'cde', 'CDE07G1996' => 'cde', 'CDE07G2078' => 'cde', 'CDE11G0611' => 'cde', 'Cfa001683' => 'cfa', 'Cfa001734' => 'cfa', 'Cfa001737' => 'cfa', 'Cfa003751' => 'cfa', 'Cfa012019' => 'cfa', 'Cfa017353' => 'cfa', 'Cfa017732' => 'cfa', 'Cfa022464' => 'cfa', 'Ciclev10012400m.g' => 'ccl', 'Ciclev10021242m.g' => 'ccl', 'Ciclev10021302m.g' => 'ccl', 'Ciclev10021463m.g' => 'ccl', 'Ciclev10032359m.g' => 'ccl', 'CiPaw.01G081000' => 'cil', 'CiPaw.01G262500' => 'cil', 'CiPaw.01G269800' => 'cil', 'CiPaw.02G168400' => 'cil', 'CiPaw.05G119500' => 'cil', 'CiPaw.11G147300' => 'cil', 'ClCG01G003630' => 'cla', 'ClCG05G000510' => 'cla', 'ClCG05G002300' => 'cla', 'ClCG08G007650' => 'cla', 'ClCG10G021250' => 'cla', 'COL.COLO4_06218' => 'col', 'COL.COLO4_12538' => 'col', 'COL.COLO4_14775' => 'col', 'COL.COLO4_23875' => 'col', 'Cpa.g.sc141.16' => 'cpa', 'Cpa.g.sc169.16' => 'cpa', 'Cpa.g.sc244.4' => 'cpa', 'Cpa.g.sc244.5' => 'cpa', 'Cpa.g.sc29.87' => 'cpa', 'Cpa.g.sc53.115' => 'cpa', 'Cre03.g207502' => 'cre', 'Cre06.g277000' => 'cre', 'Cre09.g394050' => 'cre', 'CsaV3_3G007680' => 'csa', 'CsaV3_3G009710' => 'csa', 'CsaV3_3G034790' => 'csa', 'CsaV3_5G003750' => 'csa', 'CsaV3_6G036620' => 'csa', 'CSS0002288' => 'camsi', 'CSS0011250' => 'camsi', 'CSS0021619' => 'camsi', 'CSS0046701' => 'camsi', 'DCAR_006420' => 'dca', 'DCAR_006865' => 'dca', 'DCAR_008558' => 'dca', 'DCAR_028754' => 'dca', 'DCAR_028755' => 'dca', 'Dinv31218' => 'din', 'Dinv32371' => 'din', 'Dinv34250' => 'din', 'Dinv37156' => 'din', 'Dinv43704' => 'din', 'Duzib093G1811' => 'dzi', 'Duzib106G1622' => 'dzi', 'Duzib114G0504' => 'dzi', 'Duzib128G0338' => 'dzi', 'Duzib128G1577' => 'dzi', 'Duzib133G0104' => 'dzi', 'Duzib133G1080' => 'dzi', 'Duzib138G0324' => 'dzi', 'Duzib138G0394' => 'dzi', 'Duzib205G0122' => 'dzi', 'Duzib268G1020' => 'dzi', 'Duzib268G1359' => 'dzi', 'ECA232G3929' => 'eca', 'ECA236G2210' => 'eca', 'ECA236G2287' => 'eca', 'ECA240G4568' => 'eca', 'ECA247G0894' => 'eca', 'EL10Ac1g00200' => 'bvu', 'EL10Ac1g00886' => 'bvu', 'EL10As1g23091' => 'bvu', 'EL10As1g23092' => 'bvu', 'Eucgr.A01284' => 'egr', 'Eucgr.A01285' => 'egr', 'Eucgr.D02456' => 'egr', 'Eucgr.E00018' => 'egr', 'Eucgr.E01439' => 'egr', 'Eucgr.G02859' => 'egr', 'FAN01G0168' => 'fan', 'FAN01G0453' => 'fan', 'FAN01G2761' => 'fan', 'FAN02G1239' => 'fan', 'FAN03G0645' => 'fan', 'FAN03G2707' => 'fan', 'FAN03G2978' => 'fan', 'FAN04G0227' => 'fan', 'FAN06G0091' => 'fan', 'FAN06G1418' => 'fan', 'FAN06G1512' => 'fan', 'FAN06G1986' => 'fan', 'FAN06G2905' => 'fan', 'FAN06G4325' => 'fan', 'FAN08G0033' => 'fan', 'FAN09G0642' => 'fan', 'FAN10G1763' => 'fan', 'FAN10G2026' => 'fan', 'FAN10G2513' => 'fan', 'FAN10G3402' => 'fan', 'FAN10G3564' => 'fan', 'FAN10G3987' => 'fan', 'FAN13G1490' => 'fan', 'FAN14G5857' => 'fan', 'FAN18G1188' => 'fan', 'FvH4_5g00750' => 'fve', 'FvH4_6g13410' => 'fve', 'FvH4_7g11740' => 'fve', 'FvH4_7g17410' => 'fve', 'FvH4_7g18860' => 'fve', 'Glyma.01G099100' => 'gma', 'Glyma.01G142300' => 'gma', 'Glyma.03G025500' => 'gma', 'Glyma.03G069700' => 'gma', 'Glyma.03G260000' => 'gma', 'Glyma.09G269800' => 'gma', 'Glyma.10G208700' => 'gma', 'Glyma.18G220400' => 'gma', 'Glyma.20G182000' => 'gma', 'Gohir.A01G221726' => 'ghi', 'Gohir.A07G134600' => 'ghi', 'Gohir.A07G146000' => 'ghi', 'Gohir.A08G173900' => 'ghi', 'Gohir.A09G194900' => 'ghi', 'Gohir.A10G204100' => 'ghi', 'Gohir.A11G080600' => 'ghi', 'Gohir.A11G327500' => 'ghi', 'Gohir.A12G101800' => 'ghi', 'Gohir.D01G211200' => 'ghi', 'Gohir.D07G139200' => 'ghi', 'Gohir.D07G152100' => 'ghi', 'Gohir.D08G192600' => 'ghi', 'Gohir.D09G189200' => 'ghi', 'Gohir.D10G212000' => 'ghi', 'Gohir.D11G085200' => 'ghi', 'Gohir.D11G346400' => 'ghi', 'Gohir.D12G104800' => 'ghi', 'Gorai.001G151300' => 'gra', 'Gorai.001G174100' => 'gra', 'Gorai.002G257000' => 'gra', 'Gorai.004G202600' => 'gra', 'Gorai.007G090900' => 'gra', 'Gorai.007G376700' => 'gra', 'Gorai.008G114100' => 'gra', 'Gorai.011G237900' => 'gra', 'GSVIVG01005450001' => 'vvi', 'GSVIVG01016232001' => 'vvi', 'GSVIVG01026157001' => 'vvi', 'GSVIVG01027419001' => 'vvi', 'GSVIVG01027631001' => 'vvi', 'GSVIVG01034143001' => 'vvi', 'HanXRQChr03g0093921' => 'han', 'HanXRQChr04g0120001' => 'han', 'HanXRQChr04g0122561' => 'han', 'HanXRQChr09g0246851' => 'han', 'HanXRQChr10g0293311' => 'han', 'HanXRQChr13g0425231' => 'han', 'HanXRQChr16g0532571' => 'han', 'Haze_09050' => 'cav', 'Haze_15715' => 'cav', 'Haze_15716' => 'cav', 'Haze_16803' => 'cav', 'Haze_16850' => 'cav', 'Hma1.2p1_0301F.1_g118655' => 'hma', 'Hma1.2p1_0309F.1_g120590' => 'hma', 'Hma1.2p1_0936F.1_g238900' => 'hma', 'Hma1.2p1_3552F.1_g336740' => 'hma', 'HPP92_003520' => 'vpl', 'HPP92_006628' => 'vpl', 'HPP92_006645' => 'vpl', 'HPP92_014669' => 'vpl', 'HPP92_015077' => 'vpl', 'Hund16742' => 'sun', 'Hund17022' => 'sun', 'Lalb_Chr02g0152131' => 'lal', 'Lalb_Chr05g0225371' => 'lal', 'Lalb_Chr07g0189841' => 'lal', 'Lalb_Chr07g0192961' => 'lal', 'Lalb_Chr12g0208221' => 'lal', 'Lalb_Chr13g0291211' => 'lal', 'Lalb_Chr13g0291781' => 'lal', 'Lalb_Chr18g0044651' => 'lal', 'Lalb_Chr21g0313731' => 'lal', 'Lj1g0022533' => 'lja', 'Lj2A18T50' => 'lonja', 'Lj2A92G93' => 'lonja', 'Lj3A965T73' => 'lonja', 'Lj3g0000673' => 'lja', 'Lj3g0002666' => 'lja', 'Lj4g0016985' => 'lja', 'Lj5g0003625' => 'lja', 'Lj7A529G36' => 'lonja', 'Lj9A569T49' => 'lonja', 'Lj9A604T63' => 'lonja', 'Lsat_1_v5_gn_3_132060' => 'lsa', 'Lsat_1_v5_gn_4_68941' => 'lsa', 'Lsat_1_v5_gn_5_95580' => 'lsa', 'Lsat_1_v5_gn_7_161' => 'lsa', 'Lsat_1_v5_gn_7_7041' => 'lsa', 'Lsat_1_v5_gn_9_33481' => 'lsa', 'Lsat_1_v5_gn_9_68260' => 'lsa', 'Manes.01G073100' => 'mes', 'Manes.01G266300' => 'mes', 'Manes.02G033300' => 'mes', 'Manes.05G017900' => 'mes', 'Manes.05G046100' => 'mes', 'Manes.08G080900' => 'mes', 'Manes.10G049400' => 'mes', 'Mapoly0009s0186' => 'mpo', 'Mapoly0036s0118' => 'mpo', 'Mapoly0101s0046' => 'mpo', 'MBI04_g30218_MAGBIO' => 'mbi', 'MBI04_g35564_MAGBIO' => 'mbi', 'MBI12_g34011_MAGBIO' => 'mbi', 'MBI14_g04655_MAGBIO' => 'mbi', 'MCO07G653' => 'mco', 'MCO10G173' => 'mco', 'MD01G1087100' => 'mdo', 'MD01G1104200' => 'mdo', 'MD02G1205100' => 'mdo', 'MD04G1079200' => 'mdo', 'MD04G1131400' => 'mdo', 'MD07G1121600' => 'mdo', 'MD07G1157300' => 'mdo', 'MD07G1171000' => 'mdo', 'MD12G1144500' => 'mdo', 'Medtr1g094610' => 'mtr', 'Medtr4g021795' => 'mtr', 'Medtr4g023760' => 'mtr', 'Medtr7g118050' => 'mtr', 'MELO3C005582.2' => 'cme', 'MELO3C005989.2' => 'cme', 'MELO3C006192.2' => 'cme', 'MELO3C009248.2' => 'cme', 'MELO3C019817.2' => 'cme', 'Migut.B01625' => 'egut', 'Migut.B01915' => 'egut', 'Migut.F01721' => 'egut', 'Migut.J00314' => 'egut', 'MSTRG.20742' => 'ama', 'MSTRG.8134' => 'ama', 'Nitab4.5_0000096g0010' => 'nta', 'Nitab4.5_0000202g0030' => 'nta', 'Nitab4.5_0000216g0370' => 'nta', 'Nitab4.5_0000457g0230' => 'nta', 'Nitab4.5_0001702g0170' => 'nta', 'Nitab4.5_0003607g0010' => 'nta', 'Nitab4.5_0004917g0020' => 'nta', 'Nitab4.5_0007059g0010' => 'nta', 'Nitab4.5_0007184g0010' => 'nta', 'Nitab4.5_0007346g0020' => 'nta', 'Nn1g00410' => 'nnu', 'Nn1g01252' => 'nnu', 'Nn2g11168' => 'nnu', 'Nn2g13403' => 'nnu', 'Nn2g13760' => 'nnu', 'Nn4g26380' => 'nnu', 'Oeu000806.2' => 'oeu', 'Oeu005788.1' => 'oeu', 'Oeu006900.3' => 'oeu', 'Oeu007797.1' => 'oeu', 'Oeu011932.1' => 'oeu', 'Oeu022739.1' => 'oeu', 'Oeu037918.1' => 'oeu', 'Oeu055490.2' => 'oeu', 'Os01g0844400' => 'osa', 'Os02g0819100' => 'osa', 'Os03g0804300' => 'osa', 'Os05g0458000' => 'osa', 'Os07g0467800' => 'osa', 'Os12g0602200' => 'osa', 'Peaxi162Scf00013g03444' => 'pax', 'Peaxi162Scf00094g01120' => 'pax', 'Peaxi162Scf00191g01211' => 'pax', 'Peaxi162Scf00238g01110' => 'pax', 'Peaxi162Scf00330g00719' => 'pax', 'Peaxi162Scf00627g00018' => 'pax', 'PGR031G2686' => 'pgr', 'PGR042G0809' => 'pgr', 'PGR142G0193' => 'pgr', 'PGSC0003DMG400011066' => 'stu', 'PGSC0003DMG400012041' => 'stu', 'PGSC0003DMG400013678' => 'stu', 'PGSC0003DMG400023477' => 'stu', 'PGSC0003DMG400025956' => 'stu', 'PGSC0003DMG401019151' => 'stu', 'Phvul.006G116400' => 'pvu', 'Phvul.007G097300' => 'pvu', 'Phvul.010G015000' => 'pvu', 'Phvul.010G083900' => 'pvu', 'Potri.001G117100' => 'ptr', 'Potri.002G147300' => 'ptr', 'Potri.003G115600' => 'ptr', 'Potri.006G087400' => 'ptr', 'Potri.010G226100' => 'ptr', 'Potri.014G069200' => 'ptr', 'Potri.014G104000' => 'ptr', 'Potri.016G100200' => 'ptr', 'Pp3c10_20450' => 'ppa', 'Pp3c1_42400' => 'ppa', 'Pp3c3_24390' => 'ppa', 'Pp3c3_2860' => 'ppa', 'PRCOL_00003193' => 'pco', 'Prupe.2G144500' => 'ppe', 'Prupe.2G195700' => 'ppe', 'Prupe.2G209800' => 'ppe', 'Prupe.5G080000' => 'ppe', 'Prupe.6G257900' => 'ppe', 'Psat3g001160' => 'psa', 'Psat6g181880' => 'psa', 'Psat7g233720' => 'psa', 'PSO063G7587' => 'pso', 'PSO339G2145' => 'pso', 'PSO339G3369' => 'pso', 'PSO478G2747' => 'pso', 'PSO513G0140' => 'pso', 'PSO782G1614' => 'pso', 'PSO782G4889' => 'pso', 'PSO782G5485' => 'pso', 'PSO801G0241' => 'pso', 'QL07p048854' => 'qlo', 'QL08p046745' => 'qlo', 'QL08p052606' => 'qlo', 'QL08p053414' => 'qlo', 'QL08p054868' => 'qlo', 'RcHm_v2.0_Chr1g0350251' => 'rch', 'RcHm_v2.0_Chr1g0360851' => 'rch', 'RcHm_v2.0_Chr1g0362791' => 'rch', 'RcHm_v2.0_Chr3g0466281' => 'rch', 'RcHm_v2.0_Chr7g0201481' => 'rch', 'Rhsim01G0148600' => 'rsi', 'Rhsim05G0194400' => 'rsi', 'Rhsim07G0000700' => 'rsi', 'Rhsim07G0000800' => 'rsi', 'Rhsim07G0027900' => 'rsi', 'Rhsim09G0149500' => 'rsi', 'RhsimUnG0186900' => 'rsi', 'Sabra01G0089900' => 'sbr', 'Sabra02G0114700' => 'sbr', 'Sabra02G0116300' => 'sbr', 'Sabra03G0080100' => 'sbr', 'Sabra08G0024300' => 'sbr', 'Sabra10G0174300' => 'sbr', 'Sabra14G0048900' => 'sbr', 'Sabra14G0076500' => 'sbr', 'SalBow5G2513' => 'sbo', 'Sc01g0002300' => 'sci', 'Sc01g0004450' => 'sci', 'Sc06g0001680' => 'sci', 'Sc23g0003580' => 'sci', 'Sed0000913' => 'sed', 'Sed0001655' => 'sed', 'Sed0007745' => 'sed', 'Sed0010951' => 'sed', 'Sed0017599' => 'sed', 'Sed0021405' => 'sed', 'Sed0022810' => 'sed', 'SEGI_07099' => 'sgi', 'SEGI_11931' => 'sgi', 'SEGI_13187' => 'sgi', 'SEGI_29958' => 'sgi', 'SEGI_36351' => 'sgi', 'SGA_v2.0_scaffold126G33770' => 'sas', 'SGA_v2.0_scaffold153G37003' => 'sas', 'SGA_v2.0_scaffold2G01359' => 'sas', 'SGA_v2.0_scaffold5G03064' => 'sas', 'SGA_v2.0_scaffold95G28903' => 'sas', 'SHI12701' => 'shi', 'SHI26410' => 'shi', 'SHI38997' => 'shi', 'SHI53759' => 'shi', 'SHI53886' => 'shi', 'SHI54714' => 'shi', 'SMO011G0041' => 'smo', 'SMO146G0251' => 'smo', 'SMO160G0004' => 'smo', 'SMO174G0057' => 'smo', 'SMO244G0089' => 'smo', 'SMO296G0011' => 'smo', 'Solyc01g091280.3' => 'sly', 'Solyc05g047610.3' => 'sly', 'Solyc05g047640.3' => 'sly', 'Solyc05g055630.3' => 'sly', 'Solyc10g018160.2' => 'sly', 'Solyc10g084820.2' => 'sly', 'Solyc10g086565.2' => 'sly', 'Sopen01g037030' => 'spe', 'Sopen05g027920' => 'spe', 'Sopen05g034070' => 'spe', 'Sopen10g007260' => 'spe', 'Sopen10g034260' => 'spe', 'Sopen10g035950' => 'spe', 'Sp3g07710' => 'spa', 'Sp4g27420' => 'spa', 'Sp5g02450' => 'spa', 'Sp6g01280' => 'spa', 'Sp6g38480' => 'spa', 'Sp7g20780' => 'spa', 'TAR374G1413' => 'tar', 'TAR623G1777' => 'tar', 'TAR629G2370' => 'tar', 'TAR633G1759' => 'tar', 'TAR636G3387' => 'tar', 'THA.LOC104802447' => 'tha', 'THA.LOC104813916' => 'tha', 'THA.LOC104816423' => 'tha', 'THA.LOC104817246' => 'tha', 'THA.LOC104825895' => 'tha', 'Thecc.01G335200' => 'tca', 'Thecc.01G377400' => 'tca', 'Thecc.03G262200' => 'tca', 'Thecc.05G036800' => 'tca', 'Thecc.10G080500' => 'tca', 'Thecc.10G080800' => 'tca', 'Thhalv10001560m.g' => 'esa', 'Thhalv10006120m.g' => 'esa', 'Thhalv10014375m.g' => 'esa', 'Thhalv10021264m.g' => 'esa', 'Thhalv10028856m.g' => 'esa', 'TPR.G1914' => 'tpr', 'TPR.G4757' => 'tpr', 'TPR.G5595' => 'tpr', 'TWI14G0952' => 'twi', 'TWI14G1307' => 'twi', 'TWI38G2143' => 'twi', 'TWI59G0826' => 'twi', 'TWI77G0527' => 'twi', 'TWI81G0150' => 'twi', 'unitig_21.g21018' => 'ugi', 'unitig_26.g9725' => 'ugi', 'unitig_744.g24653' => 'ugi', 'unitig_749.g13778' => 'ugi', 'unitig_899.g15035' => 'ugi', 'vmacro04296' => 'vma', 'vmacro04852' => 'vma', 'vmacro13404' => 'vma', 'vmacro20169' => 'vma', 'vmacro21014' => 'vma', 'VMungo0331G0237' => 'vmu', 'VMungo0331G0706' => 'vmu', 'VMungo0331G1361' => 'vmu', 'VMungo0331G1489' => 'vmu', 'VMungo0540G1037' => 'vmu', 'VMungo0720G2487' => 'vmu', 'VMungo0720G2721' => 'vmu', 'Zm00001eb086860' => 'zma', 'Zm00001eb104760' => 'zma', 'Zm00001eb148220' => 'zma', 'Zm00001eb259030' => 'zma', 'Zm00001eb289590' => 'zma', 'Zm00001eb420150' => 'zma' ), 'gf_id' => 'HOM05D000968', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000968' ), 'data_identifier' => 'HOM05D000968', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000968', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p31690' => 'bna', 'A03p36040' => 'bna', 'A03p53730' => 'bna', 'A04p01410' => 'bna', 'A05p05420' => 'bna', 'A05p39630' => 'bna', 'A05p39640' => 'bna', 'A09p00970' => 'bna', 'A09p53060' => 'bna', 'A10p31890' => 'bna', 'Aa31LG10G15040' => 'aar', 'Aa31LG1G21090' => 'aar', 'Aa31LG1G26900' => 'aar', 'Aa31LG3G1820' => 'aar', 'Aa31LG5G1100' => 'aar', 'Aa31LG6G4740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2265' => 'aag', 'Actinidia07998' => 'ach', 'Actinidia11266' => 'ach', 'Actinidia12682' => 'ach', 'Actinidia26479' => 'ach', 'Actinidia31406' => 'ach', 'Actinidia32437' => 'ach', 'Actinidia38862' => 'ach', 'Ah.05g174230' => 'amhyb', 'Ah.05g179070' => 'amhyb', 'Ah.05g179090' => 'amhyb', 'Ah.12g059950' => 'amhyb', 'AL3G20480' => 'aly', 'AL4G44520' => 'aly', 'AL5G43110' => 'aly', 'AL6G13890' => 'aly', 'AL6G52620' => 'aly', 'AL7G30830' => 'aly', 'Aqoxy1G00899' => 'aox', 'Aqoxy5G04333' => 'aox', 'Aqoxy7G00641' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3IZ0NN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4EF6AW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W9P8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79GA3M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C43NQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFCU6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G95YVJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCHK29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LU1UG8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX91RN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGB4B1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8DA0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9H7JI' => 'arhy', 'AT3G09320' => 'ath', 'AT3G60800' => 'ath', 'AT4G00840' => 'ath', 'AT4G22750' => 'ath', 'AT5G04270' => 'ath', 'ATR0090G003' => 'atr', 'ATR0559G349' => 'atr', 'ATR0680G261' => 'atr', 'ATR0810G048' => 'atr', 'Atru.chr12.831' => 'acertr', 'Atru.chr5.303' => 'acertr', 'Atru.chr5.748' => 'acertr', 'Atru.chr8.1999' => 'acertr', 'Atru.chr9.1436' => 'acertr', 'AUR62004211' => 'cqu', 'AUR62004548' => 'cqu', 'AUR62013637' => 'cqu', 'AUR62022662' => 'cqu', 'AUR62025777' => 'cqu', 'AUR62042386' => 'cqu', 'BcaB01g02310' => 'bca', 'BcaB01g06062' => 'bca', 'BcaB02g08975' => 'bca', 'BcaB02g08980' => 'bca', 'BcaC01g04228' => 'bca', 'BcaC01g06830' => 'bca', 'BcaC02g10186' => 'bca', 'BcaC02g12214' => 'bca', 'BcaC04g24101' => 'bca', 'BcaC05g29520' => 'bca', 'BcaC05g29661' => 'bca', 'BcaC06g32130' => 'bca', 'BcaC06g32131' => 'bca', 'BcaC07g40601' => 'bca', 'BcaC07g42641' => 'bca', 'BcaNung01038' => 'bca', 'BcaNung01676' => 'bca', 'BcaNung02480' => 'bca', 'BcaNung07376' => 'bca', 'BolC3t16146H' => 'bol', 'BolC3t16637H' => 'bol', 'BolC4t22257H' => 'bol', 'BolC4t24728H' => 'bol', 'BolC5t34517H' => 'bol', 'BolC7t45703H' => 'bol', 'BolC8t51166H' => 'bol', 'BolC9t53038H' => 'bol', 'BolC9t60000H' => 'bol', 'BraA01t01345Z' => 'bra', 'BraA01t01346Z' => 'bra', 'BraA01t01348Z' => 'bra', 'BraA03t12347Z' => 'bra', 'BraA03t12775Z' => 'bra', 'BraA03t14439Z' => 'bra', 'BraA04t15860Z' => 'bra', 'BraA05t19511Z' => 'bra', 'BraA05t22746Z' => 'bra', 'BraA09t35767Z' => 'bra', 'BraA09t40732Z' => 'bra', 'BraA10t45233Z' => 'bra', 'C03p38720' => 'bna', 'C03p43680' => 'bna', 'C04p06350' => 'bna', 'C04p31800' => 'bna', 'C05p58680' => 'bna', 'C07p52110' => 'bna', 'C08p35760' => 'bna', 'C09p01050' => 'bna', 'C09p72600' => 'bna', 'CAN.G106.2' => 'can', 'CAN.G1482.1' => 'can', 'CAN.G324.12' => 'can', 'CAN.G388.20' => 'can', 'CAN.G412.7' => 'can', 'CAN.G694.32' => 'can', 'CAN.G92.12' => 'can', 'CANSAT11G2353' => 'cansat', 'CANSAT21G1398' => 'cansat', 'CANSAT56G2456' => 'cansat', 'CANSAT56G3031' => 'cansat', 'CANSAT56G4539' => 'cansat', 'CARHR083680' => 'chi', 'CARHR171190' => 'chi', 'CARHR209010' => 'chi', 'CARHR229680' => 'chi', 'CARHR249490' => 'chi', 'Carub.0003s0844' => 'cru', 'Carub.0005s2755' => 'cru', 'Carub.0006s0322' => 'cru', 'Carub.0006s3586' => 'cru', 'Carub.0007s1855' => 'cru', 'Ca_07808_v3' => 'car', 'Ca_09535_v3' => 'car', 'Ca_10548_v3' => 'car', 'Ca_19913_v3' => 'car', 'Ca_19916_v3' => 'car', 'Ca_19975_v3' => 'car', 'CBR_g22876' => 'cbr', 'CBR_g22879' => 'cbr', 'CBR_g38491' => 'cbr', 'CBR_g54185' => 'cbr', 'CBR_g54190' => 'cbr', 'Cc02_g11020' => 'ccan', 'Cc02_g23920' => 'ccan', 'Cc02_g39860' => 'ccan', 'Cc02_g39870' => 'ccan', 'Cc03_g06760' => 'ccan', 'Cc06_g02450' => 'ccan', 'Cc09_g09450' => 'ccan', 'CDE02G1959' => 'cde', 'CDE04G0600' => 'cde', 'CDE07G1996' => 'cde', 'CDE07G2078' => 'cde', 'CDE11G0611' => 'cde', 'Cfa001683' => 'cfa', 'Cfa001734' => 'cfa', 'Cfa001737' => 'cfa', 'Cfa003751' => 'cfa', 'Cfa012019' => 'cfa', 'Cfa017353' => 'cfa', 'Cfa017732' => 'cfa', 'Cfa022464' => 'cfa', 'Ciclev10012400m.g' => 'ccl', 'Ciclev10021242m.g' => 'ccl', 'Ciclev10021302m.g' => 'ccl', 'Ciclev10021463m.g' => 'ccl', 'Ciclev10032359m.g' => 'ccl', 'CiPaw.01G081000' => 'cil', 'CiPaw.01G262500' => 'cil', 'CiPaw.01G269800' => 'cil', 'CiPaw.02G168400' => 'cil', 'CiPaw.05G119500' => 'cil', 'CiPaw.11G147300' => 'cil', 'ClCG01G003630' => 'cla', 'ClCG05G000510' => 'cla', 'ClCG05G002300' => 'cla', 'ClCG08G007650' => 'cla', 'ClCG10G021250' => 'cla', 'COL.COLO4_06218' => 'col', 'COL.COLO4_12538' => 'col', 'COL.COLO4_14775' => 'col', 'COL.COLO4_23875' => 'col', 'Cpa.g.sc141.16' => 'cpa', 'Cpa.g.sc169.16' => 'cpa', 'Cpa.g.sc244.4' => 'cpa', 'Cpa.g.sc244.5' => 'cpa', 'Cpa.g.sc29.87' => 'cpa', 'Cpa.g.sc53.115' => 'cpa', 'Cre03.g207502' => 'cre', 'Cre06.g277000' => 'cre', 'Cre09.g394050' => 'cre', 'CsaV3_3G007680' => 'csa', 'CsaV3_3G009710' => 'csa', 'CsaV3_3G034790' => 'csa', 'CsaV3_5G003750' => 'csa', 'CsaV3_6G036620' => 'csa', 'CSS0002288' => 'camsi', 'CSS0011250' => 'camsi', 'CSS0021619' => 'camsi', 'CSS0046701' => 'camsi', 'DCAR_006420' => 'dca', 'DCAR_006865' => 'dca', 'DCAR_008558' => 'dca', 'DCAR_028754' => 'dca', 'DCAR_028755' => 'dca', 'Dinv31218' => 'din', 'Dinv32371' => 'din', 'Dinv34250' => 'din', 'Dinv37156' => 'din', 'Dinv43704' => 'din', 'Duzib093G1811' => 'dzi', 'Duzib106G1622' => 'dzi', 'Duzib114G0504' => 'dzi', 'Duzib128G0338' => 'dzi', 'Duzib128G1577' => 'dzi', 'Duzib133G0104' => 'dzi', 'Duzib133G1080' => 'dzi', 'Duzib138G0324' => 'dzi', 'Duzib138G0394' => 'dzi', 'Duzib205G0122' => 'dzi', 'Duzib268G1020' => 'dzi', 'Duzib268G1359' => 'dzi', 'ECA232G3929' => 'eca', 'ECA236G2210' => 'eca', 'ECA236G2287' => 'eca', 'ECA240G4568' => 'eca', 'ECA247G0894' => 'eca', 'EL10Ac1g00200' => 'bvu', 'EL10Ac1g00886' => 'bvu', 'EL10As1g23091' => 'bvu', 'EL10As1g23092' => 'bvu', 'Eucgr.A01284' => 'egr', 'Eucgr.A01285' => 'egr', 'Eucgr.D02456' => 'egr', 'Eucgr.E00018' => 'egr', 'Eucgr.E01439' => 'egr', 'Eucgr.G02859' => 'egr', 'FAN01G0168' => 'fan', 'FAN01G0453' => 'fan', 'FAN01G2761' => 'fan', 'FAN02G1239' => 'fan', 'FAN03G0645' => 'fan', 'FAN03G2707' => 'fan', 'FAN03G2978' => 'fan', 'FAN04G0227' => 'fan', 'FAN06G0091' => 'fan', 'FAN06G1418' => 'fan', 'FAN06G1512' => 'fan', 'FAN06G1986' => 'fan', 'FAN06G2905' => 'fan', 'FAN06G4325' => 'fan', 'FAN08G0033' => 'fan', 'FAN09G0642' => 'fan', 'FAN10G1763' => 'fan', 'FAN10G2026' => 'fan', 'FAN10G2513' => 'fan', 'FAN10G3402' => 'fan', 'FAN10G3564' => 'fan', 'FAN10G3987' => 'fan', 'FAN13G1490' => 'fan', 'FAN14G5857' => 'fan', 'FAN18G1188' => 'fan', 'FvH4_5g00750' => 'fve', 'FvH4_6g13410' => 'fve', 'FvH4_7g11740' => 'fve', 'FvH4_7g17410' => 'fve', 'FvH4_7g18860' => 'fve', 'Glyma.01G099100' => 'gma', 'Glyma.01G142300' => 'gma', 'Glyma.03G025500' => 'gma', 'Glyma.03G069700' => 'gma', 'Glyma.03G260000' => 'gma', 'Glyma.09G269800' => 'gma', 'Glyma.10G208700' => 'gma', 'Glyma.18G220400' => 'gma', 'Glyma.20G182000' => 'gma', 'Gohir.A01G221726' => 'ghi', 'Gohir.A07G134600' => 'ghi', 'Gohir.A07G146000' => 'ghi', 'Gohir.A08G173900' => 'ghi', 'Gohir.A09G194900' => 'ghi', 'Gohir.A10G204100' => 'ghi', 'Gohir.A11G080600' => 'ghi', 'Gohir.A11G327500' => 'ghi', 'Gohir.A12G101800' => 'ghi', 'Gohir.D01G211200' => 'ghi', 'Gohir.D07G139200' => 'ghi', 'Gohir.D07G152100' => 'ghi', 'Gohir.D08G192600' => 'ghi', 'Gohir.D09G189200' => 'ghi', 'Gohir.D10G212000' => 'ghi', 'Gohir.D11G085200' => 'ghi', 'Gohir.D11G346400' => 'ghi', 'Gohir.D12G104800' => 'ghi', 'Gorai.001G151300' => 'gra', 'Gorai.001G174100' => 'gra', 'Gorai.002G257000' => 'gra', 'Gorai.004G202600' => 'gra', 'Gorai.007G090900' => 'gra', 'Gorai.007G376700' => 'gra', 'Gorai.008G114100' => 'gra', 'Gorai.011G237900' => 'gra', 'GSVIVG01005450001' => 'vvi', 'GSVIVG01016232001' => 'vvi', 'GSVIVG01026157001' => 'vvi', 'GSVIVG01027419001' => 'vvi', 'GSVIVG01027631001' => 'vvi', 'GSVIVG01034143001' => 'vvi', 'HanXRQChr03g0093921' => 'han', 'HanXRQChr04g0120001' => 'han', 'HanXRQChr04g0122561' => 'han', 'HanXRQChr09g0246851' => 'han', 'HanXRQChr10g0293311' => 'han', 'HanXRQChr13g0425231' => 'han', 'HanXRQChr16g0532571' => 'han', 'Haze_09050' => 'cav', 'Haze_15715' => 'cav', 'Haze_15716' => 'cav', 'Haze_16803' => 'cav', 'Haze_16850' => 'cav', 'Hma1.2p1_0301F.1_g118655' => 'hma', 'Hma1.2p1_0309F.1_g120590' => 'hma', 'Hma1.2p1_0936F.1_g238900' => 'hma', 'Hma1.2p1_3552F.1_g336740' => 'hma', 'HPP92_003520' => 'vpl', 'HPP92_006628' => 'vpl', 'HPP92_006645' => 'vpl', 'HPP92_014669' => 'vpl', 'HPP92_015077' => 'vpl', 'Hund16742' => 'sun', 'Hund17022' => 'sun', 'Lalb_Chr02g0152131' => 'lal', 'Lalb_Chr05g0225371' => 'lal', 'Lalb_Chr07g0189841' => 'lal', 'Lalb_Chr07g0192961' => 'lal', 'Lalb_Chr12g0208221' => 'lal', 'Lalb_Chr13g0291211' => 'lal', 'Lalb_Chr13g0291781' => 'lal', 'Lalb_Chr18g0044651' => 'lal', 'Lalb_Chr21g0313731' => 'lal', 'Lj1g0022533' => 'lja', 'Lj2A18T50' => 'lonja', 'Lj2A92G93' => 'lonja', 'Lj3A965T73' => 'lonja', 'Lj3g0000673' => 'lja', 'Lj3g0002666' => 'lja', 'Lj4g0016985' => 'lja', 'Lj5g0003625' => 'lja', 'Lj7A529G36' => 'lonja', 'Lj9A569T49' => 'lonja', 'Lj9A604T63' => 'lonja', 'Lsat_1_v5_gn_3_132060' => 'lsa', 'Lsat_1_v5_gn_4_68941' => 'lsa', 'Lsat_1_v5_gn_5_95580' => 'lsa', 'Lsat_1_v5_gn_7_161' => 'lsa', 'Lsat_1_v5_gn_7_7041' => 'lsa', 'Lsat_1_v5_gn_9_33481' => 'lsa', 'Lsat_1_v5_gn_9_68260' => 'lsa', 'Manes.01G073100' => 'mes', 'Manes.01G266300' => 'mes', 'Manes.02G033300' => 'mes', 'Manes.05G017900' => 'mes', 'Manes.05G046100' => 'mes', 'Manes.08G080900' => 'mes', 'Manes.10G049400' => 'mes', 'Mapoly0009s0186' => 'mpo', 'Mapoly0036s0118' => 'mpo', 'Mapoly0101s0046' => 'mpo', 'MBI04_g30218_MAGBIO' => 'mbi', 'MBI04_g35564_MAGBIO' => 'mbi', 'MBI12_g34011_MAGBIO' => 'mbi', 'MBI14_g04655_MAGBIO' => 'mbi', 'MCO07G653' => 'mco', 'MCO10G173' => 'mco', 'MD01G1087100' => 'mdo', 'MD01G1104200' => 'mdo', 'MD02G1205100' => 'mdo', 'MD04G1079200' => 'mdo', 'MD04G1131400' => 'mdo', 'MD07G1121600' => 'mdo', 'MD07G1157300' => 'mdo', 'MD07G1171000' => 'mdo', 'MD12G1144500' => 'mdo', 'Medtr1g094610' => 'mtr', 'Medtr4g021795' => 'mtr', 'Medtr4g023760' => 'mtr', 'Medtr7g118050' => 'mtr', 'MELO3C005582.2' => 'cme', 'MELO3C005989.2' => 'cme', 'MELO3C006192.2' => 'cme', 'MELO3C009248.2' => 'cme', 'MELO3C019817.2' => 'cme', 'Migut.B01625' => 'egut', 'Migut.B01915' => 'egut', 'Migut.F01721' => 'egut', 'Migut.J00314' => 'egut', 'MSTRG.20742' => 'ama', 'MSTRG.8134' => 'ama', 'Nitab4.5_0000096g0010' => 'nta', 'Nitab4.5_0000202g0030' => 'nta', 'Nitab4.5_0000216g0370' => 'nta', 'Nitab4.5_0000457g0230' => 'nta', 'Nitab4.5_0001702g0170' => 'nta', 'Nitab4.5_0003607g0010' => 'nta', 'Nitab4.5_0004917g0020' => 'nta', 'Nitab4.5_0007059g0010' => 'nta', 'Nitab4.5_0007184g0010' => 'nta', 'Nitab4.5_0007346g0020' => 'nta', 'Nn1g00410' => 'nnu', 'Nn1g01252' => 'nnu', 'Nn2g11168' => 'nnu', 'Nn2g13403' => 'nnu', 'Nn2g13760' => 'nnu', 'Nn4g26380' => 'nnu', 'Oeu000806.2' => 'oeu', 'Oeu005788.1' => 'oeu', 'Oeu006900.3' => 'oeu', 'Oeu007797.1' => 'oeu', 'Oeu011932.1' => 'oeu', 'Oeu022739.1' => 'oeu', 'Oeu037918.1' => 'oeu', 'Oeu055490.2' => 'oeu', 'Os01g0844400' => 'osa', 'Os02g0819100' => 'osa', 'Os03g0804300' => 'osa', 'Os05g0458000' => 'osa', 'Os07g0467800' => 'osa', 'Os12g0602200' => 'osa', 'Peaxi162Scf00013g03444' => 'pax', 'Peaxi162Scf00094g01120' => 'pax', 'Peaxi162Scf00191g01211' => 'pax', 'Peaxi162Scf00238g01110' => 'pax', 'Peaxi162Scf00330g00719' => 'pax', 'Peaxi162Scf00627g00018' => 'pax', 'PGR031G2686' => 'pgr', 'PGR042G0809' => 'pgr', 'PGR142G0193' => 'pgr', 'PGSC0003DMG400011066' => 'stu', 'PGSC0003DMG400012041' => 'stu', 'PGSC0003DMG400013678' => 'stu', 'PGSC0003DMG400023477' => 'stu', 'PGSC0003DMG400025956' => 'stu', 'PGSC0003DMG401019151' => 'stu', 'Phvul.006G116400' => 'pvu', 'Phvul.007G097300' => 'pvu', 'Phvul.010G015000' => 'pvu', 'Phvul.010G083900' => 'pvu', 'Potri.001G117100' => 'ptr', 'Potri.002G147300' => 'ptr', 'Potri.003G115600' => 'ptr', 'Potri.006G087400' => 'ptr', 'Potri.010G226100' => 'ptr', 'Potri.014G069200' => 'ptr', 'Potri.014G104000' => 'ptr', 'Potri.016G100200' => 'ptr', 'Pp3c10_20450' => 'ppa', 'Pp3c1_42400' => 'ppa', 'Pp3c3_24390' => 'ppa', 'Pp3c3_2860' => 'ppa', 'PRCOL_00003193' => 'pco', 'Prupe.2G144500' => 'ppe', 'Prupe.2G195700' => 'ppe', 'Prupe.2G209800' => 'ppe', 'Prupe.5G080000' => 'ppe', 'Prupe.6G257900' => 'ppe', 'Psat3g001160' => 'psa', 'Psat6g181880' => 'psa', 'Psat7g233720' => 'psa', 'PSO063G7587' => 'pso', 'PSO339G2145' => 'pso', 'PSO339G3369' => 'pso', 'PSO478G2747' => 'pso', 'PSO513G0140' => 'pso', 'PSO782G1614' => 'pso', 'PSO782G4889' => 'pso', 'PSO782G5485' => 'pso', 'PSO801G0241' => 'pso', 'QL07p048854' => 'qlo', 'QL08p046745' => 'qlo', 'QL08p052606' => 'qlo', 'QL08p053414' => 'qlo', 'QL08p054868' => 'qlo', 'RcHm_v2.0_Chr1g0350251' => 'rch', 'RcHm_v2.0_Chr1g0360851' => 'rch', 'RcHm_v2.0_Chr1g0362791' => 'rch', 'RcHm_v2.0_Chr3g0466281' => 'rch', 'RcHm_v2.0_Chr7g0201481' => 'rch', 'Rhsim01G0148600' => 'rsi', 'Rhsim05G0194400' => 'rsi', 'Rhsim07G0000700' => 'rsi', 'Rhsim07G0000800' => 'rsi', 'Rhsim07G0027900' => 'rsi', 'Rhsim09G0149500' => 'rsi', 'RhsimUnG0186900' => 'rsi', 'Sabra01G0089900' => 'sbr', 'Sabra02G0114700' => 'sbr', 'Sabra02G0116300' => 'sbr', 'Sabra03G0080100' => 'sbr', 'Sabra08G0024300' => 'sbr', 'Sabra10G0174300' => 'sbr', 'Sabra14G0048900' => 'sbr', 'Sabra14G0076500' => 'sbr', 'SalBow5G2513' => 'sbo', 'Sc01g0002300' => 'sci', 'Sc01g0004450' => 'sci', 'Sc06g0001680' => 'sci', 'Sc23g0003580' => 'sci', 'Sed0000913' => 'sed', 'Sed0001655' => 'sed', 'Sed0007745' => 'sed', 'Sed0010951' => 'sed', 'Sed0017599' => 'sed', 'Sed0021405' => 'sed', 'Sed0022810' => 'sed', 'SEGI_07099' => 'sgi', 'SEGI_11931' => 'sgi', 'SEGI_13187' => 'sgi', 'SEGI_29958' => 'sgi', 'SEGI_36351' => 'sgi', 'SGA_v2.0_scaffold126G33770' => 'sas', 'SGA_v2.0_scaffold153G37003' => 'sas', 'SGA_v2.0_scaffold2G01359' => 'sas', 'SGA_v2.0_scaffold5G03064' => 'sas', 'SGA_v2.0_scaffold95G28903' => 'sas', 'SHI12701' => 'shi', 'SHI26410' => 'shi', 'SHI38997' => 'shi', 'SHI53759' => 'shi', 'SHI53886' => 'shi', 'SHI54714' => 'shi', 'SMO011G0041' => 'smo', 'SMO146G0251' => 'smo', 'SMO160G0004' => 'smo', 'SMO174G0057' => 'smo', 'SMO244G0089' => 'smo', 'SMO296G0011' => 'smo', 'Solyc01g091280.3' => 'sly', 'Solyc05g047610.3' => 'sly', 'Solyc05g047640.3' => 'sly', 'Solyc05g055630.3' => 'sly', 'Solyc10g018160.2' => 'sly', 'Solyc10g084820.2' => 'sly', 'Solyc10g086565.2' => 'sly', 'Sopen01g037030' => 'spe', 'Sopen05g027920' => 'spe', 'Sopen05g034070' => 'spe', 'Sopen10g007260' => 'spe', 'Sopen10g034260' => 'spe', 'Sopen10g035950' => 'spe', 'Sp3g07710' => 'spa', 'Sp4g27420' => 'spa', 'Sp5g02450' => 'spa', 'Sp6g01280' => 'spa', 'Sp6g38480' => 'spa', 'Sp7g20780' => 'spa', 'TAR374G1413' => 'tar', 'TAR623G1777' => 'tar', 'TAR629G2370' => 'tar', 'TAR633G1759' => 'tar', 'TAR636G3387' => 'tar', 'THA.LOC104802447' => 'tha', 'THA.LOC104813916' => 'tha', 'THA.LOC104816423' => 'tha', 'THA.LOC104817246' => 'tha', 'THA.LOC104825895' => 'tha', 'Thecc.01G335200' => 'tca', 'Thecc.01G377400' => 'tca', 'Thecc.03G262200' => 'tca', 'Thecc.05G036800' => 'tca', 'Thecc.10G080500' => 'tca', 'Thecc.10G080800' => 'tca', 'Thhalv10001560m.g' => 'esa', 'Thhalv10006120m.g' => 'esa', 'Thhalv10014375m.g' => 'esa', 'Thhalv10021264m.g' => 'esa', 'Thhalv10028856m.g' => 'esa', 'TPR.G1914' => 'tpr', 'TPR.G4757' => 'tpr', 'TPR.G5595' => 'tpr', 'TWI14G0952' => 'twi', 'TWI14G1307' => 'twi', 'TWI38G2143' => 'twi', 'TWI59G0826' => 'twi', 'TWI77G0527' => 'twi', 'TWI81G0150' => 'twi', 'unitig_21.g21018' => 'ugi', 'unitig_26.g9725' => 'ugi', 'unitig_744.g24653' => 'ugi', 'unitig_749.g13778' => 'ugi', 'unitig_899.g15035' => 'ugi', 'vmacro04296' => 'vma', 'vmacro04852' => 'vma', 'vmacro13404' => 'vma', 'vmacro20169' => 'vma', 'vmacro21014' => 'vma', 'VMungo0331G0237' => 'vmu', 'VMungo0331G0706' => 'vmu', 'VMungo0331G1361' => 'vmu', 'VMungo0331G1489' => 'vmu', 'VMungo0540G1037' => 'vmu', 'VMungo0720G2487' => 'vmu', 'VMungo0720G2721' => 'vmu', 'Zm00001eb086860' => 'zma', 'Zm00001eb104760' => 'zma', 'Zm00001eb148220' => 'zma', 'Zm00001eb259030' => 'zma', 'Zm00001eb289590' => 'zma', 'Zm00001eb420150' => 'zma' ) $gf_id = 'HOM05D000968' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000968' ) $data_identifier = 'HOM05D000968' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 19, 'bol' => (int) 9, 'bra' => (int) 12, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 5, 'ccan' => (int) 7, 'cde' => (int) 5, 'cfa' => (int) 8, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 4, 'dca' => (int) 5, 'din' => (int) 5, 'dzi' => (int) 12, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 25, 'fve' => (int) 5, 'gma' => (int) 9, 'ghi' => (int) 18, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 7, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 5, 'sun' => (int) 2, 'lal' => (int) 9, 'lja' => (int) 5, 'lonja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 9, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 2, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 3, 'stu' => (int) 6, 'pvu' => (int) 4, 'ptr' => (int) 8, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 3, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 1, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 5, 'sas' => (int) 5, 'shi' => (int) 6, 'smo' => (int) 6, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 3, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420150' $species_info = array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ) $local_species = 'rsi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000968', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p31690' => 'bna', 'A03p36040' => 'bna', 'A03p53730' => 'bna', 'A04p01410' => 'bna', 'A05p05420' => 'bna', 'A05p39630' => 'bna', 'A05p39640' => 'bna', 'A09p00970' => 'bna', 'A09p53060' => 'bna', 'A10p31890' => 'bna', 'Aa31LG10G15040' => 'aar', 'Aa31LG1G21090' => 'aar', 'Aa31LG1G26900' => 'aar', 'Aa31LG3G1820' => 'aar', 'Aa31LG5G1100' => 'aar', 'Aa31LG6G4740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2265' => 'aag', 'Actinidia07998' => 'ach', 'Actinidia11266' => 'ach', 'Actinidia12682' => 'ach', 'Actinidia26479' => 'ach', 'Actinidia31406' => 'ach', 'Actinidia32437' => 'ach', 'Actinidia38862' => 'ach', 'Ah.05g174230' => 'amhyb', 'Ah.05g179070' => 'amhyb', 'Ah.05g179090' => 'amhyb', 'Ah.12g059950' => 'amhyb', 'AL3G20480' => 'aly', 'AL4G44520' => 'aly', 'AL5G43110' => 'aly', 'AL6G13890' => 'aly', 'AL6G52620' => 'aly', 'AL7G30830' => 'aly', 'Aqoxy1G00899' => 'aox', 'Aqoxy5G04333' => 'aox', 'Aqoxy7G00641' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3IZ0NN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4EF6AW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W9P8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79GA3M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C43NQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFCU6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G95YVJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCHK29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LU1UG8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX91RN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGB4B1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8DA0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9H7JI' => 'arhy', 'AT3G09320' => 'ath', 'AT3G60800' => 'ath', 'AT4G00840' => 'ath', 'AT4G22750' => 'ath', 'AT5G04270' => 'ath', 'ATR0090G003' => 'atr', 'ATR0559G349' => 'atr', 'ATR0680G261' => 'atr', 'ATR0810G048' => 'atr', 'Atru.chr12.831' => 'acertr', 'Atru.chr5.303' => 'acertr', 'Atru.chr5.748' => 'acertr', 'Atru.chr8.1999' => 'acertr', 'Atru.chr9.1436' => 'acertr', 'AUR62004211' => 'cqu', 'AUR62004548' => 'cqu', 'AUR62013637' => 'cqu', 'AUR62022662' => 'cqu', 'AUR62025777' => 'cqu', 'AUR62042386' => 'cqu', 'BcaB01g02310' => 'bca', 'BcaB01g06062' => 'bca', 'BcaB02g08975' => 'bca', 'BcaB02g08980' => 'bca', 'BcaC01g04228' => 'bca', 'BcaC01g06830' => 'bca', 'BcaC02g10186' => 'bca', 'BcaC02g12214' => 'bca', 'BcaC04g24101' => 'bca', 'BcaC05g29520' => 'bca', 'BcaC05g29661' => 'bca', 'BcaC06g32130' => 'bca', 'BcaC06g32131' => 'bca', 'BcaC07g40601' => 'bca', 'BcaC07g42641' => 'bca', 'BcaNung01038' => 'bca', 'BcaNung01676' => 'bca', 'BcaNung02480' => 'bca', 'BcaNung07376' => 'bca', 'BolC3t16146H' => 'bol', 'BolC3t16637H' => 'bol', 'BolC4t22257H' => 'bol', 'BolC4t24728H' => 'bol', 'BolC5t34517H' => 'bol', 'BolC7t45703H' => 'bol', 'BolC8t51166H' => 'bol', 'BolC9t53038H' => 'bol', 'BolC9t60000H' => 'bol', 'BraA01t01345Z' => 'bra', 'BraA01t01346Z' => 'bra', 'BraA01t01348Z' => 'bra', 'BraA03t12347Z' => 'bra', 'BraA03t12775Z' => 'bra', 'BraA03t14439Z' => 'bra', 'BraA04t15860Z' => 'bra', 'BraA05t19511Z' => 'bra', 'BraA05t22746Z' => 'bra', 'BraA09t35767Z' => 'bra', 'BraA09t40732Z' => 'bra', 'BraA10t45233Z' => 'bra', 'C03p38720' => 'bna', 'C03p43680' => 'bna', 'C04p06350' => 'bna', 'C04p31800' => 'bna', 'C05p58680' => 'bna', 'C07p52110' => 'bna', 'C08p35760' => 'bna', 'C09p01050' => 'bna', 'C09p72600' => 'bna', 'CAN.G106.2' => 'can', 'CAN.G1482.1' => 'can', 'CAN.G324.12' => 'can', 'CAN.G388.20' => 'can', 'CAN.G412.7' => 'can', 'CAN.G694.32' => 'can', 'CAN.G92.12' => 'can', 'CANSAT11G2353' => 'cansat', 'CANSAT21G1398' => 'cansat', 'CANSAT56G2456' => 'cansat', 'CANSAT56G3031' => 'cansat', 'CANSAT56G4539' => 'cansat', 'CARHR083680' => 'chi', 'CARHR171190' => 'chi', 'CARHR209010' => 'chi', 'CARHR229680' => 'chi', 'CARHR249490' => 'chi', 'Carub.0003s0844' => 'cru', 'Carub.0005s2755' => 'cru', 'Carub.0006s0322' => 'cru', 'Carub.0006s3586' => 'cru', 'Carub.0007s1855' => 'cru', 'Ca_07808_v3' => 'car', 'Ca_09535_v3' => 'car', 'Ca_10548_v3' => 'car', 'Ca_19913_v3' => 'car', 'Ca_19916_v3' => 'car', 'Ca_19975_v3' => 'car', 'CBR_g22876' => 'cbr', 'CBR_g22879' => 'cbr', 'CBR_g38491' => 'cbr', 'CBR_g54185' => 'cbr', 'CBR_g54190' => 'cbr', 'Cc02_g11020' => 'ccan', 'Cc02_g23920' => 'ccan', 'Cc02_g39860' => 'ccan', 'Cc02_g39870' => 'ccan', 'Cc03_g06760' => 'ccan', 'Cc06_g02450' => 'ccan', 'Cc09_g09450' => 'ccan', 'CDE02G1959' => 'cde', 'CDE04G0600' => 'cde', 'CDE07G1996' => 'cde', 'CDE07G2078' => 'cde', 'CDE11G0611' => 'cde', 'Cfa001683' => 'cfa', 'Cfa001734' => 'cfa', 'Cfa001737' => 'cfa', 'Cfa003751' => 'cfa', 'Cfa012019' => 'cfa', 'Cfa017353' => 'cfa', 'Cfa017732' => 'cfa', 'Cfa022464' => 'cfa', 'Ciclev10012400m.g' => 'ccl', 'Ciclev10021242m.g' => 'ccl', 'Ciclev10021302m.g' => 'ccl', 'Ciclev10021463m.g' => 'ccl', 'Ciclev10032359m.g' => 'ccl', 'CiPaw.01G081000' => 'cil', 'CiPaw.01G262500' => 'cil', 'CiPaw.01G269800' => 'cil', 'CiPaw.02G168400' => 'cil', 'CiPaw.05G119500' => 'cil', 'CiPaw.11G147300' => 'cil', 'ClCG01G003630' => 'cla', 'ClCG05G000510' => 'cla', 'ClCG05G002300' => 'cla', 'ClCG08G007650' => 'cla', 'ClCG10G021250' => 'cla', 'COL.COLO4_06218' => 'col', 'COL.COLO4_12538' => 'col', 'COL.COLO4_14775' => 'col', 'COL.COLO4_23875' => 'col', 'Cpa.g.sc141.16' => 'cpa', 'Cpa.g.sc169.16' => 'cpa', 'Cpa.g.sc244.4' => 'cpa', 'Cpa.g.sc244.5' => 'cpa', 'Cpa.g.sc29.87' => 'cpa', 'Cpa.g.sc53.115' => 'cpa', 'Cre03.g207502' => 'cre', 'Cre06.g277000' => 'cre', 'Cre09.g394050' => 'cre', 'CsaV3_3G007680' => 'csa', 'CsaV3_3G009710' => 'csa', 'CsaV3_3G034790' => 'csa', 'CsaV3_5G003750' => 'csa', 'CsaV3_6G036620' => 'csa', 'CSS0002288' => 'camsi', 'CSS0011250' => 'camsi', 'CSS0021619' => 'camsi', 'CSS0046701' => 'camsi', 'DCAR_006420' => 'dca', 'DCAR_006865' => 'dca', 'DCAR_008558' => 'dca', 'DCAR_028754' => 'dca', 'DCAR_028755' => 'dca', 'Dinv31218' => 'din', 'Dinv32371' => 'din', 'Dinv34250' => 'din', 'Dinv37156' => 'din', 'Dinv43704' => 'din', 'Duzib093G1811' => 'dzi', 'Duzib106G1622' => 'dzi', 'Duzib114G0504' => 'dzi', 'Duzib128G0338' => 'dzi', 'Duzib128G1577' => 'dzi', 'Duzib133G0104' => 'dzi', 'Duzib133G1080' => 'dzi', 'Duzib138G0324' => 'dzi', 'Duzib138G0394' => 'dzi', 'Duzib205G0122' => 'dzi', 'Duzib268G1020' => 'dzi', 'Duzib268G1359' => 'dzi', 'ECA232G3929' => 'eca', 'ECA236G2210' => 'eca', 'ECA236G2287' => 'eca', 'ECA240G4568' => 'eca', 'ECA247G0894' => 'eca', 'EL10Ac1g00200' => 'bvu', 'EL10Ac1g00886' => 'bvu', 'EL10As1g23091' => 'bvu', 'EL10As1g23092' => 'bvu', 'Eucgr.A01284' => 'egr', 'Eucgr.A01285' => 'egr', 'Eucgr.D02456' => 'egr', 'Eucgr.E00018' => 'egr', 'Eucgr.E01439' => 'egr', 'Eucgr.G02859' => 'egr', 'FAN01G0168' => 'fan', 'FAN01G0453' => 'fan', 'FAN01G2761' => 'fan', 'FAN02G1239' => 'fan', 'FAN03G0645' => 'fan', 'FAN03G2707' => 'fan', 'FAN03G2978' => 'fan', 'FAN04G0227' => 'fan', 'FAN06G0091' => 'fan', 'FAN06G1418' => 'fan', 'FAN06G1512' => 'fan', 'FAN06G1986' => 'fan', 'FAN06G2905' => 'fan', 'FAN06G4325' => 'fan', 'FAN08G0033' => 'fan', 'FAN09G0642' => 'fan', 'FAN10G1763' => 'fan', 'FAN10G2026' => 'fan', 'FAN10G2513' => 'fan', 'FAN10G3402' => 'fan', 'FAN10G3564' => 'fan', 'FAN10G3987' => 'fan', 'FAN13G1490' => 'fan', 'FAN14G5857' => 'fan', 'FAN18G1188' => 'fan', 'FvH4_5g00750' => 'fve', 'FvH4_6g13410' => 'fve', 'FvH4_7g11740' => 'fve', 'FvH4_7g17410' => 'fve', 'FvH4_7g18860' => 'fve', 'Glyma.01G099100' => 'gma', 'Glyma.01G142300' => 'gma', 'Glyma.03G025500' => 'gma', 'Glyma.03G069700' => 'gma', 'Glyma.03G260000' => 'gma', 'Glyma.09G269800' => 'gma', 'Glyma.10G208700' => 'gma', 'Glyma.18G220400' => 'gma', 'Glyma.20G182000' => 'gma', 'Gohir.A01G221726' => 'ghi', 'Gohir.A07G134600' => 'ghi', 'Gohir.A07G146000' => 'ghi', 'Gohir.A08G173900' => 'ghi', 'Gohir.A09G194900' => 'ghi', 'Gohir.A10G204100' => 'ghi', 'Gohir.A11G080600' => 'ghi', 'Gohir.A11G327500' => 'ghi', 'Gohir.A12G101800' => 'ghi', 'Gohir.D01G211200' => 'ghi', 'Gohir.D07G139200' => 'ghi', 'Gohir.D07G152100' => 'ghi', 'Gohir.D08G192600' => 'ghi', 'Gohir.D09G189200' => 'ghi', 'Gohir.D10G212000' => 'ghi', 'Gohir.D11G085200' => 'ghi', 'Gohir.D11G346400' => 'ghi', 'Gohir.D12G104800' => 'ghi', 'Gorai.001G151300' => 'gra', 'Gorai.001G174100' => 'gra', 'Gorai.002G257000' => 'gra', 'Gorai.004G202600' => 'gra', 'Gorai.007G090900' => 'gra', 'Gorai.007G376700' => 'gra', 'Gorai.008G114100' => 'gra', 'Gorai.011G237900' => 'gra', 'GSVIVG01005450001' => 'vvi', 'GSVIVG01016232001' => 'vvi', 'GSVIVG01026157001' => 'vvi', 'GSVIVG01027419001' => 'vvi', 'GSVIVG01027631001' => 'vvi', 'GSVIVG01034143001' => 'vvi', 'HanXRQChr03g0093921' => 'han', 'HanXRQChr04g0120001' => 'han', 'HanXRQChr04g0122561' => 'han', 'HanXRQChr09g0246851' => 'han', 'HanXRQChr10g0293311' => 'han', 'HanXRQChr13g0425231' => 'han', 'HanXRQChr16g0532571' => 'han', 'Haze_09050' => 'cav', 'Haze_15715' => 'cav', 'Haze_15716' => 'cav', 'Haze_16803' => 'cav', 'Haze_16850' => 'cav', 'Hma1.2p1_0301F.1_g118655' => 'hma', 'Hma1.2p1_0309F.1_g120590' => 'hma', 'Hma1.2p1_0936F.1_g238900' => 'hma', 'Hma1.2p1_3552F.1_g336740' => 'hma', 'HPP92_003520' => 'vpl', 'HPP92_006628' => 'vpl', 'HPP92_006645' => 'vpl', 'HPP92_014669' => 'vpl', 'HPP92_015077' => 'vpl', 'Hund16742' => 'sun', 'Hund17022' => 'sun', 'Lalb_Chr02g0152131' => 'lal', 'Lalb_Chr05g0225371' => 'lal', 'Lalb_Chr07g0189841' => 'lal', 'Lalb_Chr07g0192961' => 'lal', 'Lalb_Chr12g0208221' => 'lal', 'Lalb_Chr13g0291211' => 'lal', 'Lalb_Chr13g0291781' => 'lal', 'Lalb_Chr18g0044651' => 'lal', 'Lalb_Chr21g0313731' => 'lal', 'Lj1g0022533' => 'lja', 'Lj2A18T50' => 'lonja', 'Lj2A92G93' => 'lonja', 'Lj3A965T73' => 'lonja', 'Lj3g0000673' => 'lja', 'Lj3g0002666' => 'lja', 'Lj4g0016985' => 'lja', 'Lj5g0003625' => 'lja', 'Lj7A529G36' => 'lonja', 'Lj9A569T49' => 'lonja', 'Lj9A604T63' => 'lonja', 'Lsat_1_v5_gn_3_132060' => 'lsa', 'Lsat_1_v5_gn_4_68941' => 'lsa', 'Lsat_1_v5_gn_5_95580' => 'lsa', 'Lsat_1_v5_gn_7_161' => 'lsa', 'Lsat_1_v5_gn_7_7041' => 'lsa', 'Lsat_1_v5_gn_9_33481' => 'lsa', 'Lsat_1_v5_gn_9_68260' => 'lsa', 'Manes.01G073100' => 'mes', 'Manes.01G266300' => 'mes', 'Manes.02G033300' => 'mes', 'Manes.05G017900' => 'mes', 'Manes.05G046100' => 'mes', 'Manes.08G080900' => 'mes', 'Manes.10G049400' => 'mes', 'Mapoly0009s0186' => 'mpo', 'Mapoly0036s0118' => 'mpo', 'Mapoly0101s0046' => 'mpo', 'MBI04_g30218_MAGBIO' => 'mbi', 'MBI04_g35564_MAGBIO' => 'mbi', 'MBI12_g34011_MAGBIO' => 'mbi', 'MBI14_g04655_MAGBIO' => 'mbi', 'MCO07G653' => 'mco', 'MCO10G173' => 'mco', 'MD01G1087100' => 'mdo', 'MD01G1104200' => 'mdo', 'MD02G1205100' => 'mdo', 'MD04G1079200' => 'mdo', 'MD04G1131400' => 'mdo', 'MD07G1121600' => 'mdo', 'MD07G1157300' => 'mdo', 'MD07G1171000' => 'mdo', 'MD12G1144500' => 'mdo', 'Medtr1g094610' => 'mtr', 'Medtr4g021795' => 'mtr', 'Medtr4g023760' => 'mtr', 'Medtr7g118050' => 'mtr', 'MELO3C005582.2' => 'cme', 'MELO3C005989.2' => 'cme', 'MELO3C006192.2' => 'cme', 'MELO3C009248.2' => 'cme', 'MELO3C019817.2' => 'cme', 'Migut.B01625' => 'egut', 'Migut.B01915' => 'egut', 'Migut.F01721' => 'egut', 'Migut.J00314' => 'egut', 'MSTRG.20742' => 'ama', 'MSTRG.8134' => 'ama', 'Nitab4.5_0000096g0010' => 'nta', 'Nitab4.5_0000202g0030' => 'nta', 'Nitab4.5_0000216g0370' => 'nta', 'Nitab4.5_0000457g0230' => 'nta', 'Nitab4.5_0001702g0170' => 'nta', 'Nitab4.5_0003607g0010' => 'nta', 'Nitab4.5_0004917g0020' => 'nta', 'Nitab4.5_0007059g0010' => 'nta', 'Nitab4.5_0007184g0010' => 'nta', 'Nitab4.5_0007346g0020' => 'nta', 'Nn1g00410' => 'nnu', 'Nn1g01252' => 'nnu', 'Nn2g11168' => 'nnu', 'Nn2g13403' => 'nnu', 'Nn2g13760' => 'nnu', 'Nn4g26380' => 'nnu', 'Oeu000806.2' => 'oeu', 'Oeu005788.1' => 'oeu', 'Oeu006900.3' => 'oeu', 'Oeu007797.1' => 'oeu', 'Oeu011932.1' => 'oeu', 'Oeu022739.1' => 'oeu', 'Oeu037918.1' => 'oeu', 'Oeu055490.2' => 'oeu', 'Os01g0844400' => 'osa', 'Os02g0819100' => 'osa', 'Os03g0804300' => 'osa', 'Os05g0458000' => 'osa', 'Os07g0467800' => 'osa', 'Os12g0602200' => 'osa', 'Peaxi162Scf00013g03444' => 'pax', 'Peaxi162Scf00094g01120' => 'pax', 'Peaxi162Scf00191g01211' => 'pax', 'Peaxi162Scf00238g01110' => 'pax', 'Peaxi162Scf00330g00719' => 'pax', 'Peaxi162Scf00627g00018' => 'pax', 'PGR031G2686' => 'pgr', 'PGR042G0809' => 'pgr', 'PGR142G0193' => 'pgr', 'PGSC0003DMG400011066' => 'stu', 'PGSC0003DMG400012041' => 'stu', 'PGSC0003DMG400013678' => 'stu', 'PGSC0003DMG400023477' => 'stu', 'PGSC0003DMG400025956' => 'stu', 'PGSC0003DMG401019151' => 'stu', 'Phvul.006G116400' => 'pvu', 'Phvul.007G097300' => 'pvu', 'Phvul.010G015000' => 'pvu', 'Phvul.010G083900' => 'pvu', 'Potri.001G117100' => 'ptr', 'Potri.002G147300' => 'ptr', 'Potri.003G115600' => 'ptr', 'Potri.006G087400' => 'ptr', 'Potri.010G226100' => 'ptr', 'Potri.014G069200' => 'ptr', 'Potri.014G104000' => 'ptr', 'Potri.016G100200' => 'ptr', 'Pp3c10_20450' => 'ppa', 'Pp3c1_42400' => 'ppa', 'Pp3c3_24390' => 'ppa', 'Pp3c3_2860' => 'ppa', 'PRCOL_00003193' => 'pco', 'Prupe.2G144500' => 'ppe', 'Prupe.2G195700' => 'ppe', 'Prupe.2G209800' => 'ppe', 'Prupe.5G080000' => 'ppe', 'Prupe.6G257900' => 'ppe', 'Psat3g001160' => 'psa', 'Psat6g181880' => 'psa', 'Psat7g233720' => 'psa', 'PSO063G7587' => 'pso', 'PSO339G2145' => 'pso', 'PSO339G3369' => 'pso', 'PSO478G2747' => 'pso', 'PSO513G0140' => 'pso', 'PSO782G1614' => 'pso', 'PSO782G4889' => 'pso', 'PSO782G5485' => 'pso', 'PSO801G0241' => 'pso', 'QL07p048854' => 'qlo', 'QL08p046745' => 'qlo', 'QL08p052606' => 'qlo', 'QL08p053414' => 'qlo', 'QL08p054868' => 'qlo', 'RcHm_v2.0_Chr1g0350251' => 'rch', 'RcHm_v2.0_Chr1g0360851' => 'rch', 'RcHm_v2.0_Chr1g0362791' => 'rch', 'RcHm_v2.0_Chr3g0466281' => 'rch', 'RcHm_v2.0_Chr7g0201481' => 'rch', 'Rhsim01G0148600' => 'rsi', 'Rhsim05G0194400' => 'rsi', 'Rhsim07G0000700' => 'rsi', 'Rhsim07G0000800' => 'rsi', 'Rhsim07G0027900' => 'rsi', 'Rhsim09G0149500' => 'rsi', 'RhsimUnG0186900' => 'rsi', 'Sabra01G0089900' => 'sbr', 'Sabra02G0114700' => 'sbr', 'Sabra02G0116300' => 'sbr', 'Sabra03G0080100' => 'sbr', 'Sabra08G0024300' => 'sbr', 'Sabra10G0174300' => 'sbr', 'Sabra14G0048900' => 'sbr', 'Sabra14G0076500' => 'sbr', 'SalBow5G2513' => 'sbo', 'Sc01g0002300' => 'sci', 'Sc01g0004450' => 'sci', 'Sc06g0001680' => 'sci', 'Sc23g0003580' => 'sci', 'Sed0000913' => 'sed', 'Sed0001655' => 'sed', 'Sed0007745' => 'sed', 'Sed0010951' => 'sed', 'Sed0017599' => 'sed', 'Sed0021405' => 'sed', 'Sed0022810' => 'sed', 'SEGI_07099' => 'sgi', 'SEGI_11931' => 'sgi', 'SEGI_13187' => 'sgi', 'SEGI_29958' => 'sgi', 'SEGI_36351' => 'sgi', 'SGA_v2.0_scaffold126G33770' => 'sas', 'SGA_v2.0_scaffold153G37003' => 'sas', 'SGA_v2.0_scaffold2G01359' => 'sas', 'SGA_v2.0_scaffold5G03064' => 'sas', 'SGA_v2.0_scaffold95G28903' => 'sas', 'SHI12701' => 'shi', 'SHI26410' => 'shi', 'SHI38997' => 'shi', 'SHI53759' => 'shi', 'SHI53886' => 'shi', 'SHI54714' => 'shi', 'SMO011G0041' => 'smo', 'SMO146G0251' => 'smo', 'SMO160G0004' => 'smo', 'SMO174G0057' => 'smo', 'SMO244G0089' => 'smo', 'SMO296G0011' => 'smo', 'Solyc01g091280.3' => 'sly', 'Solyc05g047610.3' => 'sly', 'Solyc05g047640.3' => 'sly', 'Solyc05g055630.3' => 'sly', 'Solyc10g018160.2' => 'sly', 'Solyc10g084820.2' => 'sly', 'Solyc10g086565.2' => 'sly', 'Sopen01g037030' => 'spe', 'Sopen05g027920' => 'spe', 'Sopen05g034070' => 'spe', 'Sopen10g007260' => 'spe', 'Sopen10g034260' => 'spe', 'Sopen10g035950' => 'spe', 'Sp3g07710' => 'spa', 'Sp4g27420' => 'spa', 'Sp5g02450' => 'spa', 'Sp6g01280' => 'spa', 'Sp6g38480' => 'spa', 'Sp7g20780' => 'spa', 'TAR374G1413' => 'tar', 'TAR623G1777' => 'tar', 'TAR629G2370' => 'tar', 'TAR633G1759' => 'tar', 'TAR636G3387' => 'tar', 'THA.LOC104802447' => 'tha', 'THA.LOC104813916' => 'tha', 'THA.LOC104816423' => 'tha', 'THA.LOC104817246' => 'tha', 'THA.LOC104825895' => 'tha', 'Thecc.01G335200' => 'tca', 'Thecc.01G377400' => 'tca', 'Thecc.03G262200' => 'tca', 'Thecc.05G036800' => 'tca', 'Thecc.10G080500' => 'tca', 'Thecc.10G080800' => 'tca', 'Thhalv10001560m.g' => 'esa', 'Thhalv10006120m.g' => 'esa', 'Thhalv10014375m.g' => 'esa', 'Thhalv10021264m.g' => 'esa', 'Thhalv10028856m.g' => 'esa', 'TPR.G1914' => 'tpr', 'TPR.G4757' => 'tpr', 'TPR.G5595' => 'tpr', 'TWI14G0952' => 'twi', 'TWI14G1307' => 'twi', 'TWI38G2143' => 'twi', 'TWI59G0826' => 'twi', 'TWI77G0527' => 'twi', 'TWI81G0150' => 'twi', 'unitig_21.g21018' => 'ugi', 'unitig_26.g9725' => 'ugi', 'unitig_744.g24653' => 'ugi', 'unitig_749.g13778' => 'ugi', 'unitig_899.g15035' => 'ugi', 'vmacro04296' => 'vma', 'vmacro04852' => 'vma', 'vmacro13404' => 'vma', 'vmacro20169' => 'vma', 'vmacro21014' => 'vma', 'VMungo0331G0237' => 'vmu', 'VMungo0331G0706' => 'vmu', 'VMungo0331G1361' => 'vmu', 'VMungo0331G1489' => 'vmu', 'VMungo0540G1037' => 'vmu', 'VMungo0720G2487' => 'vmu', 'VMungo0720G2721' => 'vmu', 'Zm00001eb086860' => 'zma', 'Zm00001eb104760' => 'zma', 'Zm00001eb148220' => 'zma', 'Zm00001eb259030' => 'zma', 'Zm00001eb289590' => 'zma', 'Zm00001eb420150' => 'zma' ), 'gf_id' => 'HOM05D000968', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000968' ), 'data_identifier' => 'HOM05D000968', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000968', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p31690' => 'bna', 'A03p36040' => 'bna', 'A03p53730' => 'bna', 'A04p01410' => 'bna', 'A05p05420' => 'bna', 'A05p39630' => 'bna', 'A05p39640' => 'bna', 'A09p00970' => 'bna', 'A09p53060' => 'bna', 'A10p31890' => 'bna', 'Aa31LG10G15040' => 'aar', 'Aa31LG1G21090' => 'aar', 'Aa31LG1G26900' => 'aar', 'Aa31LG3G1820' => 'aar', 'Aa31LG5G1100' => 'aar', 'Aa31LG6G4740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2265' => 'aag', 'Actinidia07998' => 'ach', 'Actinidia11266' => 'ach', 'Actinidia12682' => 'ach', 'Actinidia26479' => 'ach', 'Actinidia31406' => 'ach', 'Actinidia32437' => 'ach', 'Actinidia38862' => 'ach', 'Ah.05g174230' => 'amhyb', 'Ah.05g179070' => 'amhyb', 'Ah.05g179090' => 'amhyb', 'Ah.12g059950' => 'amhyb', 'AL3G20480' => 'aly', 'AL4G44520' => 'aly', 'AL5G43110' => 'aly', 'AL6G13890' => 'aly', 'AL6G52620' => 'aly', 'AL7G30830' => 'aly', 'Aqoxy1G00899' => 'aox', 'Aqoxy5G04333' => 'aox', 'Aqoxy7G00641' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3IZ0NN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4EF6AW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W9P8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79GA3M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C43NQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFCU6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G95YVJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCHK29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LU1UG8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX91RN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGB4B1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8DA0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9H7JI' => 'arhy', 'AT3G09320' => 'ath', 'AT3G60800' => 'ath', 'AT4G00840' => 'ath', 'AT4G22750' => 'ath', 'AT5G04270' => 'ath', 'ATR0090G003' => 'atr', 'ATR0559G349' => 'atr', 'ATR0680G261' => 'atr', 'ATR0810G048' => 'atr', 'Atru.chr12.831' => 'acertr', 'Atru.chr5.303' => 'acertr', 'Atru.chr5.748' => 'acertr', 'Atru.chr8.1999' => 'acertr', 'Atru.chr9.1436' => 'acertr', 'AUR62004211' => 'cqu', 'AUR62004548' => 'cqu', 'AUR62013637' => 'cqu', 'AUR62022662' => 'cqu', 'AUR62025777' => 'cqu', 'AUR62042386' => 'cqu', 'BcaB01g02310' => 'bca', 'BcaB01g06062' => 'bca', 'BcaB02g08975' => 'bca', 'BcaB02g08980' => 'bca', 'BcaC01g04228' => 'bca', 'BcaC01g06830' => 'bca', 'BcaC02g10186' => 'bca', 'BcaC02g12214' => 'bca', 'BcaC04g24101' => 'bca', 'BcaC05g29520' => 'bca', 'BcaC05g29661' => 'bca', 'BcaC06g32130' => 'bca', 'BcaC06g32131' => 'bca', 'BcaC07g40601' => 'bca', 'BcaC07g42641' => 'bca', 'BcaNung01038' => 'bca', 'BcaNung01676' => 'bca', 'BcaNung02480' => 'bca', 'BcaNung07376' => 'bca', 'BolC3t16146H' => 'bol', 'BolC3t16637H' => 'bol', 'BolC4t22257H' => 'bol', 'BolC4t24728H' => 'bol', 'BolC5t34517H' => 'bol', 'BolC7t45703H' => 'bol', 'BolC8t51166H' => 'bol', 'BolC9t53038H' => 'bol', 'BolC9t60000H' => 'bol', 'BraA01t01345Z' => 'bra', 'BraA01t01346Z' => 'bra', 'BraA01t01348Z' => 'bra', 'BraA03t12347Z' => 'bra', 'BraA03t12775Z' => 'bra', 'BraA03t14439Z' => 'bra', 'BraA04t15860Z' => 'bra', 'BraA05t19511Z' => 'bra', 'BraA05t22746Z' => 'bra', 'BraA09t35767Z' => 'bra', 'BraA09t40732Z' => 'bra', 'BraA10t45233Z' => 'bra', 'C03p38720' => 'bna', 'C03p43680' => 'bna', 'C04p06350' => 'bna', 'C04p31800' => 'bna', 'C05p58680' => 'bna', 'C07p52110' => 'bna', 'C08p35760' => 'bna', 'C09p01050' => 'bna', 'C09p72600' => 'bna', 'CAN.G106.2' => 'can', 'CAN.G1482.1' => 'can', 'CAN.G324.12' => 'can', 'CAN.G388.20' => 'can', 'CAN.G412.7' => 'can', 'CAN.G694.32' => 'can', 'CAN.G92.12' => 'can', 'CANSAT11G2353' => 'cansat', 'CANSAT21G1398' => 'cansat', 'CANSAT56G2456' => 'cansat', 'CANSAT56G3031' => 'cansat', 'CANSAT56G4539' => 'cansat', 'CARHR083680' => 'chi', 'CARHR171190' => 'chi', 'CARHR209010' => 'chi', 'CARHR229680' => 'chi', 'CARHR249490' => 'chi', 'Carub.0003s0844' => 'cru', 'Carub.0005s2755' => 'cru', 'Carub.0006s0322' => 'cru', 'Carub.0006s3586' => 'cru', 'Carub.0007s1855' => 'cru', 'Ca_07808_v3' => 'car', 'Ca_09535_v3' => 'car', 'Ca_10548_v3' => 'car', 'Ca_19913_v3' => 'car', 'Ca_19916_v3' => 'car', 'Ca_19975_v3' => 'car', 'CBR_g22876' => 'cbr', 'CBR_g22879' => 'cbr', 'CBR_g38491' => 'cbr', 'CBR_g54185' => 'cbr', 'CBR_g54190' => 'cbr', 'Cc02_g11020' => 'ccan', 'Cc02_g23920' => 'ccan', 'Cc02_g39860' => 'ccan', 'Cc02_g39870' => 'ccan', 'Cc03_g06760' => 'ccan', 'Cc06_g02450' => 'ccan', 'Cc09_g09450' => 'ccan', 'CDE02G1959' => 'cde', 'CDE04G0600' => 'cde', 'CDE07G1996' => 'cde', 'CDE07G2078' => 'cde', 'CDE11G0611' => 'cde', 'Cfa001683' => 'cfa', 'Cfa001734' => 'cfa', 'Cfa001737' => 'cfa', 'Cfa003751' => 'cfa', 'Cfa012019' => 'cfa', 'Cfa017353' => 'cfa', 'Cfa017732' => 'cfa', 'Cfa022464' => 'cfa', 'Ciclev10012400m.g' => 'ccl', 'Ciclev10021242m.g' => 'ccl', 'Ciclev10021302m.g' => 'ccl', 'Ciclev10021463m.g' => 'ccl', 'Ciclev10032359m.g' => 'ccl', 'CiPaw.01G081000' => 'cil', 'CiPaw.01G262500' => 'cil', 'CiPaw.01G269800' => 'cil', 'CiPaw.02G168400' => 'cil', 'CiPaw.05G119500' => 'cil', 'CiPaw.11G147300' => 'cil', 'ClCG01G003630' => 'cla', 'ClCG05G000510' => 'cla', 'ClCG05G002300' => 'cla', 'ClCG08G007650' => 'cla', 'ClCG10G021250' => 'cla', 'COL.COLO4_06218' => 'col', 'COL.COLO4_12538' => 'col', 'COL.COLO4_14775' => 'col', 'COL.COLO4_23875' => 'col', 'Cpa.g.sc141.16' => 'cpa', 'Cpa.g.sc169.16' => 'cpa', 'Cpa.g.sc244.4' => 'cpa', 'Cpa.g.sc244.5' => 'cpa', 'Cpa.g.sc29.87' => 'cpa', 'Cpa.g.sc53.115' => 'cpa', 'Cre03.g207502' => 'cre', 'Cre06.g277000' => 'cre', 'Cre09.g394050' => 'cre', 'CsaV3_3G007680' => 'csa', 'CsaV3_3G009710' => 'csa', 'CsaV3_3G034790' => 'csa', 'CsaV3_5G003750' => 'csa', 'CsaV3_6G036620' => 'csa', 'CSS0002288' => 'camsi', 'CSS0011250' => 'camsi', 'CSS0021619' => 'camsi', 'CSS0046701' => 'camsi', 'DCAR_006420' => 'dca', 'DCAR_006865' => 'dca', 'DCAR_008558' => 'dca', 'DCAR_028754' => 'dca', 'DCAR_028755' => 'dca', 'Dinv31218' => 'din', 'Dinv32371' => 'din', 'Dinv34250' => 'din', 'Dinv37156' => 'din', 'Dinv43704' => 'din', 'Duzib093G1811' => 'dzi', 'Duzib106G1622' => 'dzi', 'Duzib114G0504' => 'dzi', 'Duzib128G0338' => 'dzi', 'Duzib128G1577' => 'dzi', 'Duzib133G0104' => 'dzi', 'Duzib133G1080' => 'dzi', 'Duzib138G0324' => 'dzi', 'Duzib138G0394' => 'dzi', 'Duzib205G0122' => 'dzi', 'Duzib268G1020' => 'dzi', 'Duzib268G1359' => 'dzi', 'ECA232G3929' => 'eca', 'ECA236G2210' => 'eca', 'ECA236G2287' => 'eca', 'ECA240G4568' => 'eca', 'ECA247G0894' => 'eca', 'EL10Ac1g00200' => 'bvu', 'EL10Ac1g00886' => 'bvu', 'EL10As1g23091' => 'bvu', 'EL10As1g23092' => 'bvu', 'Eucgr.A01284' => 'egr', 'Eucgr.A01285' => 'egr', 'Eucgr.D02456' => 'egr', 'Eucgr.E00018' => 'egr', 'Eucgr.E01439' => 'egr', 'Eucgr.G02859' => 'egr', 'FAN01G0168' => 'fan', 'FAN01G0453' => 'fan', 'FAN01G2761' => 'fan', 'FAN02G1239' => 'fan', 'FAN03G0645' => 'fan', 'FAN03G2707' => 'fan', 'FAN03G2978' => 'fan', 'FAN04G0227' => 'fan', 'FAN06G0091' => 'fan', 'FAN06G1418' => 'fan', 'FAN06G1512' => 'fan', 'FAN06G1986' => 'fan', 'FAN06G2905' => 'fan', 'FAN06G4325' => 'fan', 'FAN08G0033' => 'fan', 'FAN09G0642' => 'fan', 'FAN10G1763' => 'fan', 'FAN10G2026' => 'fan', 'FAN10G2513' => 'fan', 'FAN10G3402' => 'fan', 'FAN10G3564' => 'fan', 'FAN10G3987' => 'fan', 'FAN13G1490' => 'fan', 'FAN14G5857' => 'fan', 'FAN18G1188' => 'fan', 'FvH4_5g00750' => 'fve', 'FvH4_6g13410' => 'fve', 'FvH4_7g11740' => 'fve', 'FvH4_7g17410' => 'fve', 'FvH4_7g18860' => 'fve', 'Glyma.01G099100' => 'gma', 'Glyma.01G142300' => 'gma', 'Glyma.03G025500' => 'gma', 'Glyma.03G069700' => 'gma', 'Glyma.03G260000' => 'gma', 'Glyma.09G269800' => 'gma', 'Glyma.10G208700' => 'gma', 'Glyma.18G220400' => 'gma', 'Glyma.20G182000' => 'gma', 'Gohir.A01G221726' => 'ghi', 'Gohir.A07G134600' => 'ghi', 'Gohir.A07G146000' => 'ghi', 'Gohir.A08G173900' => 'ghi', 'Gohir.A09G194900' => 'ghi', 'Gohir.A10G204100' => 'ghi', 'Gohir.A11G080600' => 'ghi', 'Gohir.A11G327500' => 'ghi', 'Gohir.A12G101800' => 'ghi', 'Gohir.D01G211200' => 'ghi', 'Gohir.D07G139200' => 'ghi', 'Gohir.D07G152100' => 'ghi', 'Gohir.D08G192600' => 'ghi', 'Gohir.D09G189200' => 'ghi', 'Gohir.D10G212000' => 'ghi', 'Gohir.D11G085200' => 'ghi', 'Gohir.D11G346400' => 'ghi', 'Gohir.D12G104800' => 'ghi', 'Gorai.001G151300' => 'gra', 'Gorai.001G174100' => 'gra', 'Gorai.002G257000' => 'gra', 'Gorai.004G202600' => 'gra', 'Gorai.007G090900' => 'gra', 'Gorai.007G376700' => 'gra', 'Gorai.008G114100' => 'gra', 'Gorai.011G237900' => 'gra', 'GSVIVG01005450001' => 'vvi', 'GSVIVG01016232001' => 'vvi', 'GSVIVG01026157001' => 'vvi', 'GSVIVG01027419001' => 'vvi', 'GSVIVG01027631001' => 'vvi', 'GSVIVG01034143001' => 'vvi', 'HanXRQChr03g0093921' => 'han', 'HanXRQChr04g0120001' => 'han', 'HanXRQChr04g0122561' => 'han', 'HanXRQChr09g0246851' => 'han', 'HanXRQChr10g0293311' => 'han', 'HanXRQChr13g0425231' => 'han', 'HanXRQChr16g0532571' => 'han', 'Haze_09050' => 'cav', 'Haze_15715' => 'cav', 'Haze_15716' => 'cav', 'Haze_16803' => 'cav', 'Haze_16850' => 'cav', 'Hma1.2p1_0301F.1_g118655' => 'hma', 'Hma1.2p1_0309F.1_g120590' => 'hma', 'Hma1.2p1_0936F.1_g238900' => 'hma', 'Hma1.2p1_3552F.1_g336740' => 'hma', 'HPP92_003520' => 'vpl', 'HPP92_006628' => 'vpl', 'HPP92_006645' => 'vpl', 'HPP92_014669' => 'vpl', 'HPP92_015077' => 'vpl', 'Hund16742' => 'sun', 'Hund17022' => 'sun', 'Lalb_Chr02g0152131' => 'lal', 'Lalb_Chr05g0225371' => 'lal', 'Lalb_Chr07g0189841' => 'lal', 'Lalb_Chr07g0192961' => 'lal', 'Lalb_Chr12g0208221' => 'lal', 'Lalb_Chr13g0291211' => 'lal', 'Lalb_Chr13g0291781' => 'lal', 'Lalb_Chr18g0044651' => 'lal', 'Lalb_Chr21g0313731' => 'lal', 'Lj1g0022533' => 'lja', 'Lj2A18T50' => 'lonja', 'Lj2A92G93' => 'lonja', 'Lj3A965T73' => 'lonja', 'Lj3g0000673' => 'lja', 'Lj3g0002666' => 'lja', 'Lj4g0016985' => 'lja', 'Lj5g0003625' => 'lja', 'Lj7A529G36' => 'lonja', 'Lj9A569T49' => 'lonja', 'Lj9A604T63' => 'lonja', 'Lsat_1_v5_gn_3_132060' => 'lsa', 'Lsat_1_v5_gn_4_68941' => 'lsa', 'Lsat_1_v5_gn_5_95580' => 'lsa', 'Lsat_1_v5_gn_7_161' => 'lsa', 'Lsat_1_v5_gn_7_7041' => 'lsa', 'Lsat_1_v5_gn_9_33481' => 'lsa', 'Lsat_1_v5_gn_9_68260' => 'lsa', 'Manes.01G073100' => 'mes', 'Manes.01G266300' => 'mes', 'Manes.02G033300' => 'mes', 'Manes.05G017900' => 'mes', 'Manes.05G046100' => 'mes', 'Manes.08G080900' => 'mes', 'Manes.10G049400' => 'mes', 'Mapoly0009s0186' => 'mpo', 'Mapoly0036s0118' => 'mpo', 'Mapoly0101s0046' => 'mpo', 'MBI04_g30218_MAGBIO' => 'mbi', 'MBI04_g35564_MAGBIO' => 'mbi', 'MBI12_g34011_MAGBIO' => 'mbi', 'MBI14_g04655_MAGBIO' => 'mbi', 'MCO07G653' => 'mco', 'MCO10G173' => 'mco', 'MD01G1087100' => 'mdo', 'MD01G1104200' => 'mdo', 'MD02G1205100' => 'mdo', 'MD04G1079200' => 'mdo', 'MD04G1131400' => 'mdo', 'MD07G1121600' => 'mdo', 'MD07G1157300' => 'mdo', 'MD07G1171000' => 'mdo', 'MD12G1144500' => 'mdo', 'Medtr1g094610' => 'mtr', 'Medtr4g021795' => 'mtr', 'Medtr4g023760' => 'mtr', 'Medtr7g118050' => 'mtr', 'MELO3C005582.2' => 'cme', 'MELO3C005989.2' => 'cme', 'MELO3C006192.2' => 'cme', 'MELO3C009248.2' => 'cme', 'MELO3C019817.2' => 'cme', 'Migut.B01625' => 'egut', 'Migut.B01915' => 'egut', 'Migut.F01721' => 'egut', 'Migut.J00314' => 'egut', 'MSTRG.20742' => 'ama', 'MSTRG.8134' => 'ama', 'Nitab4.5_0000096g0010' => 'nta', 'Nitab4.5_0000202g0030' => 'nta', 'Nitab4.5_0000216g0370' => 'nta', 'Nitab4.5_0000457g0230' => 'nta', 'Nitab4.5_0001702g0170' => 'nta', 'Nitab4.5_0003607g0010' => 'nta', 'Nitab4.5_0004917g0020' => 'nta', 'Nitab4.5_0007059g0010' => 'nta', 'Nitab4.5_0007184g0010' => 'nta', 'Nitab4.5_0007346g0020' => 'nta', 'Nn1g00410' => 'nnu', 'Nn1g01252' => 'nnu', 'Nn2g11168' => 'nnu', 'Nn2g13403' => 'nnu', 'Nn2g13760' => 'nnu', 'Nn4g26380' => 'nnu', 'Oeu000806.2' => 'oeu', 'Oeu005788.1' => 'oeu', 'Oeu006900.3' => 'oeu', 'Oeu007797.1' => 'oeu', 'Oeu011932.1' => 'oeu', 'Oeu022739.1' => 'oeu', 'Oeu037918.1' => 'oeu', 'Oeu055490.2' => 'oeu', 'Os01g0844400' => 'osa', 'Os02g0819100' => 'osa', 'Os03g0804300' => 'osa', 'Os05g0458000' => 'osa', 'Os07g0467800' => 'osa', 'Os12g0602200' => 'osa', 'Peaxi162Scf00013g03444' => 'pax', 'Peaxi162Scf00094g01120' => 'pax', 'Peaxi162Scf00191g01211' => 'pax', 'Peaxi162Scf00238g01110' => 'pax', 'Peaxi162Scf00330g00719' => 'pax', 'Peaxi162Scf00627g00018' => 'pax', 'PGR031G2686' => 'pgr', 'PGR042G0809' => 'pgr', 'PGR142G0193' => 'pgr', 'PGSC0003DMG400011066' => 'stu', 'PGSC0003DMG400012041' => 'stu', 'PGSC0003DMG400013678' => 'stu', 'PGSC0003DMG400023477' => 'stu', 'PGSC0003DMG400025956' => 'stu', 'PGSC0003DMG401019151' => 'stu', 'Phvul.006G116400' => 'pvu', 'Phvul.007G097300' => 'pvu', 'Phvul.010G015000' => 'pvu', 'Phvul.010G083900' => 'pvu', 'Potri.001G117100' => 'ptr', 'Potri.002G147300' => 'ptr', 'Potri.003G115600' => 'ptr', 'Potri.006G087400' => 'ptr', 'Potri.010G226100' => 'ptr', 'Potri.014G069200' => 'ptr', 'Potri.014G104000' => 'ptr', 'Potri.016G100200' => 'ptr', 'Pp3c10_20450' => 'ppa', 'Pp3c1_42400' => 'ppa', 'Pp3c3_24390' => 'ppa', 'Pp3c3_2860' => 'ppa', 'PRCOL_00003193' => 'pco', 'Prupe.2G144500' => 'ppe', 'Prupe.2G195700' => 'ppe', 'Prupe.2G209800' => 'ppe', 'Prupe.5G080000' => 'ppe', 'Prupe.6G257900' => 'ppe', 'Psat3g001160' => 'psa', 'Psat6g181880' => 'psa', 'Psat7g233720' => 'psa', 'PSO063G7587' => 'pso', 'PSO339G2145' => 'pso', 'PSO339G3369' => 'pso', 'PSO478G2747' => 'pso', 'PSO513G0140' => 'pso', 'PSO782G1614' => 'pso', 'PSO782G4889' => 'pso', 'PSO782G5485' => 'pso', 'PSO801G0241' => 'pso', 'QL07p048854' => 'qlo', 'QL08p046745' => 'qlo', 'QL08p052606' => 'qlo', 'QL08p053414' => 'qlo', 'QL08p054868' => 'qlo', 'RcHm_v2.0_Chr1g0350251' => 'rch', 'RcHm_v2.0_Chr1g0360851' => 'rch', 'RcHm_v2.0_Chr1g0362791' => 'rch', 'RcHm_v2.0_Chr3g0466281' => 'rch', 'RcHm_v2.0_Chr7g0201481' => 'rch', 'Rhsim01G0148600' => 'rsi', 'Rhsim05G0194400' => 'rsi', 'Rhsim07G0000700' => 'rsi', 'Rhsim07G0000800' => 'rsi', 'Rhsim07G0027900' => 'rsi', 'Rhsim09G0149500' => 'rsi', 'RhsimUnG0186900' => 'rsi', 'Sabra01G0089900' => 'sbr', 'Sabra02G0114700' => 'sbr', 'Sabra02G0116300' => 'sbr', 'Sabra03G0080100' => 'sbr', 'Sabra08G0024300' => 'sbr', 'Sabra10G0174300' => 'sbr', 'Sabra14G0048900' => 'sbr', 'Sabra14G0076500' => 'sbr', 'SalBow5G2513' => 'sbo', 'Sc01g0002300' => 'sci', 'Sc01g0004450' => 'sci', 'Sc06g0001680' => 'sci', 'Sc23g0003580' => 'sci', 'Sed0000913' => 'sed', 'Sed0001655' => 'sed', 'Sed0007745' => 'sed', 'Sed0010951' => 'sed', 'Sed0017599' => 'sed', 'Sed0021405' => 'sed', 'Sed0022810' => 'sed', 'SEGI_07099' => 'sgi', 'SEGI_11931' => 'sgi', 'SEGI_13187' => 'sgi', 'SEGI_29958' => 'sgi', 'SEGI_36351' => 'sgi', 'SGA_v2.0_scaffold126G33770' => 'sas', 'SGA_v2.0_scaffold153G37003' => 'sas', 'SGA_v2.0_scaffold2G01359' => 'sas', 'SGA_v2.0_scaffold5G03064' => 'sas', 'SGA_v2.0_scaffold95G28903' => 'sas', 'SHI12701' => 'shi', 'SHI26410' => 'shi', 'SHI38997' => 'shi', 'SHI53759' => 'shi', 'SHI53886' => 'shi', 'SHI54714' => 'shi', 'SMO011G0041' => 'smo', 'SMO146G0251' => 'smo', 'SMO160G0004' => 'smo', 'SMO174G0057' => 'smo', 'SMO244G0089' => 'smo', 'SMO296G0011' => 'smo', 'Solyc01g091280.3' => 'sly', 'Solyc05g047610.3' => 'sly', 'Solyc05g047640.3' => 'sly', 'Solyc05g055630.3' => 'sly', 'Solyc10g018160.2' => 'sly', 'Solyc10g084820.2' => 'sly', 'Solyc10g086565.2' => 'sly', 'Sopen01g037030' => 'spe', 'Sopen05g027920' => 'spe', 'Sopen05g034070' => 'spe', 'Sopen10g007260' => 'spe', 'Sopen10g034260' => 'spe', 'Sopen10g035950' => 'spe', 'Sp3g07710' => 'spa', 'Sp4g27420' => 'spa', 'Sp5g02450' => 'spa', 'Sp6g01280' => 'spa', 'Sp6g38480' => 'spa', 'Sp7g20780' => 'spa', 'TAR374G1413' => 'tar', 'TAR623G1777' => 'tar', 'TAR629G2370' => 'tar', 'TAR633G1759' => 'tar', 'TAR636G3387' => 'tar', 'THA.LOC104802447' => 'tha', 'THA.LOC104813916' => 'tha', 'THA.LOC104816423' => 'tha', 'THA.LOC104817246' => 'tha', 'THA.LOC104825895' => 'tha', 'Thecc.01G335200' => 'tca', 'Thecc.01G377400' => 'tca', 'Thecc.03G262200' => 'tca', 'Thecc.05G036800' => 'tca', 'Thecc.10G080500' => 'tca', 'Thecc.10G080800' => 'tca', 'Thhalv10001560m.g' => 'esa', 'Thhalv10006120m.g' => 'esa', 'Thhalv10014375m.g' => 'esa', 'Thhalv10021264m.g' => 'esa', 'Thhalv10028856m.g' => 'esa', 'TPR.G1914' => 'tpr', 'TPR.G4757' => 'tpr', 'TPR.G5595' => 'tpr', 'TWI14G0952' => 'twi', 'TWI14G1307' => 'twi', 'TWI38G2143' => 'twi', 'TWI59G0826' => 'twi', 'TWI77G0527' => 'twi', 'TWI81G0150' => 'twi', 'unitig_21.g21018' => 'ugi', 'unitig_26.g9725' => 'ugi', 'unitig_744.g24653' => 'ugi', 'unitig_749.g13778' => 'ugi', 'unitig_899.g15035' => 'ugi', 'vmacro04296' => 'vma', 'vmacro04852' => 'vma', 'vmacro13404' => 'vma', 'vmacro20169' => 'vma', 'vmacro21014' => 'vma', 'VMungo0331G0237' => 'vmu', 'VMungo0331G0706' => 'vmu', 'VMungo0331G1361' => 'vmu', 'VMungo0331G1489' => 'vmu', 'VMungo0540G1037' => 'vmu', 'VMungo0720G2487' => 'vmu', 'VMungo0720G2721' => 'vmu', 'Zm00001eb086860' => 'zma', 'Zm00001eb104760' => 'zma', 'Zm00001eb148220' => 'zma', 'Zm00001eb259030' => 'zma', 'Zm00001eb289590' => 'zma', 'Zm00001eb420150' => 'zma' ) $gf_id = 'HOM05D000968' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000968' ) $data_identifier = 'HOM05D000968' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 19, 'bol' => (int) 9, 'bra' => (int) 12, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 5, 'ccan' => (int) 7, 'cde' => (int) 5, 'cfa' => (int) 8, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 4, 'dca' => (int) 5, 'din' => (int) 5, 'dzi' => (int) 12, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 25, 'fve' => (int) 5, 'gma' => (int) 9, 'ghi' => (int) 18, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 7, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 5, 'sun' => (int) 2, 'lal' => (int) 9, 'lja' => (int) 5, 'lonja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 9, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 2, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 3, 'stu' => (int) 6, 'pvu' => (int) 4, 'ptr' => (int) 8, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 3, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 1, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 5, 'sas' => (int) 5, 'shi' => (int) 6, 'smo' => (int) 6, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 3, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420150' $species_info = array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ) $local_species = 'rsi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000968', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p31690' => 'bna', 'A03p36040' => 'bna', 'A03p53730' => 'bna', 'A04p01410' => 'bna', 'A05p05420' => 'bna', 'A05p39630' => 'bna', 'A05p39640' => 'bna', 'A09p00970' => 'bna', 'A09p53060' => 'bna', 'A10p31890' => 'bna', 'Aa31LG10G15040' => 'aar', 'Aa31LG1G21090' => 'aar', 'Aa31LG1G26900' => 'aar', 'Aa31LG3G1820' => 'aar', 'Aa31LG5G1100' => 'aar', 'Aa31LG6G4740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2265' => 'aag', 'Actinidia07998' => 'ach', 'Actinidia11266' => 'ach', 'Actinidia12682' => 'ach', 'Actinidia26479' => 'ach', 'Actinidia31406' => 'ach', 'Actinidia32437' => 'ach', 'Actinidia38862' => 'ach', 'Ah.05g174230' => 'amhyb', 'Ah.05g179070' => 'amhyb', 'Ah.05g179090' => 'amhyb', 'Ah.12g059950' => 'amhyb', 'AL3G20480' => 'aly', 'AL4G44520' => 'aly', 'AL5G43110' => 'aly', 'AL6G13890' => 'aly', 'AL6G52620' => 'aly', 'AL7G30830' => 'aly', 'Aqoxy1G00899' => 'aox', 'Aqoxy5G04333' => 'aox', 'Aqoxy7G00641' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3IZ0NN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4EF6AW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W9P8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79GA3M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C43NQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFCU6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G95YVJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCHK29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LU1UG8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX91RN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGB4B1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8DA0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9H7JI' => 'arhy', 'AT3G09320' => 'ath', 'AT3G60800' => 'ath', 'AT4G00840' => 'ath', 'AT4G22750' => 'ath', 'AT5G04270' => 'ath', 'ATR0090G003' => 'atr', 'ATR0559G349' => 'atr', 'ATR0680G261' => 'atr', 'ATR0810G048' => 'atr', 'Atru.chr12.831' => 'acertr', 'Atru.chr5.303' => 'acertr', 'Atru.chr5.748' => 'acertr', 'Atru.chr8.1999' => 'acertr', 'Atru.chr9.1436' => 'acertr', 'AUR62004211' => 'cqu', 'AUR62004548' => 'cqu', 'AUR62013637' => 'cqu', 'AUR62022662' => 'cqu', 'AUR62025777' => 'cqu', 'AUR62042386' => 'cqu', 'BcaB01g02310' => 'bca', 'BcaB01g06062' => 'bca', 'BcaB02g08975' => 'bca', 'BcaB02g08980' => 'bca', 'BcaC01g04228' => 'bca', 'BcaC01g06830' => 'bca', 'BcaC02g10186' => 'bca', 'BcaC02g12214' => 'bca', 'BcaC04g24101' => 'bca', 'BcaC05g29520' => 'bca', 'BcaC05g29661' => 'bca', 'BcaC06g32130' => 'bca', 'BcaC06g32131' => 'bca', 'BcaC07g40601' => 'bca', 'BcaC07g42641' => 'bca', 'BcaNung01038' => 'bca', 'BcaNung01676' => 'bca', 'BcaNung02480' => 'bca', 'BcaNung07376' => 'bca', 'BolC3t16146H' => 'bol', 'BolC3t16637H' => 'bol', 'BolC4t22257H' => 'bol', 'BolC4t24728H' => 'bol', 'BolC5t34517H' => 'bol', 'BolC7t45703H' => 'bol', 'BolC8t51166H' => 'bol', 'BolC9t53038H' => 'bol', 'BolC9t60000H' => 'bol', 'BraA01t01345Z' => 'bra', 'BraA01t01346Z' => 'bra', 'BraA01t01348Z' => 'bra', 'BraA03t12347Z' => 'bra', 'BraA03t12775Z' => 'bra', 'BraA03t14439Z' => 'bra', 'BraA04t15860Z' => 'bra', 'BraA05t19511Z' => 'bra', 'BraA05t22746Z' => 'bra', 'BraA09t35767Z' => 'bra', 'BraA09t40732Z' => 'bra', 'BraA10t45233Z' => 'bra', 'C03p38720' => 'bna', 'C03p43680' => 'bna', 'C04p06350' => 'bna', 'C04p31800' => 'bna', 'C05p58680' => 'bna', 'C07p52110' => 'bna', 'C08p35760' => 'bna', 'C09p01050' => 'bna', 'C09p72600' => 'bna', 'CAN.G106.2' => 'can', 'CAN.G1482.1' => 'can', 'CAN.G324.12' => 'can', 'CAN.G388.20' => 'can', 'CAN.G412.7' => 'can', 'CAN.G694.32' => 'can', 'CAN.G92.12' => 'can', 'CANSAT11G2353' => 'cansat', 'CANSAT21G1398' => 'cansat', 'CANSAT56G2456' => 'cansat', 'CANSAT56G3031' => 'cansat', 'CANSAT56G4539' => 'cansat', 'CARHR083680' => 'chi', 'CARHR171190' => 'chi', 'CARHR209010' => 'chi', 'CARHR229680' => 'chi', 'CARHR249490' => 'chi', 'Carub.0003s0844' => 'cru', 'Carub.0005s2755' => 'cru', 'Carub.0006s0322' => 'cru', 'Carub.0006s3586' => 'cru', 'Carub.0007s1855' => 'cru', 'Ca_07808_v3' => 'car', 'Ca_09535_v3' => 'car', 'Ca_10548_v3' => 'car', 'Ca_19913_v3' => 'car', 'Ca_19916_v3' => 'car', 'Ca_19975_v3' => 'car', 'CBR_g22876' => 'cbr', 'CBR_g22879' => 'cbr', 'CBR_g38491' => 'cbr', 'CBR_g54185' => 'cbr', 'CBR_g54190' => 'cbr', 'Cc02_g11020' => 'ccan', 'Cc02_g23920' => 'ccan', 'Cc02_g39860' => 'ccan', 'Cc02_g39870' => 'ccan', 'Cc03_g06760' => 'ccan', 'Cc06_g02450' => 'ccan', 'Cc09_g09450' => 'ccan', 'CDE02G1959' => 'cde', 'CDE04G0600' => 'cde', 'CDE07G1996' => 'cde', 'CDE07G2078' => 'cde', 'CDE11G0611' => 'cde', 'Cfa001683' => 'cfa', 'Cfa001734' => 'cfa', 'Cfa001737' => 'cfa', 'Cfa003751' => 'cfa', 'Cfa012019' => 'cfa', 'Cfa017353' => 'cfa', 'Cfa017732' => 'cfa', 'Cfa022464' => 'cfa', 'Ciclev10012400m.g' => 'ccl', 'Ciclev10021242m.g' => 'ccl', 'Ciclev10021302m.g' => 'ccl', 'Ciclev10021463m.g' => 'ccl', 'Ciclev10032359m.g' => 'ccl', 'CiPaw.01G081000' => 'cil', 'CiPaw.01G262500' => 'cil', 'CiPaw.01G269800' => 'cil', 'CiPaw.02G168400' => 'cil', 'CiPaw.05G119500' => 'cil', 'CiPaw.11G147300' => 'cil', 'ClCG01G003630' => 'cla', 'ClCG05G000510' => 'cla', 'ClCG05G002300' => 'cla', 'ClCG08G007650' => 'cla', 'ClCG10G021250' => 'cla', 'COL.COLO4_06218' => 'col', 'COL.COLO4_12538' => 'col', 'COL.COLO4_14775' => 'col', 'COL.COLO4_23875' => 'col', 'Cpa.g.sc141.16' => 'cpa', 'Cpa.g.sc169.16' => 'cpa', 'Cpa.g.sc244.4' => 'cpa', 'Cpa.g.sc244.5' => 'cpa', 'Cpa.g.sc29.87' => 'cpa', 'Cpa.g.sc53.115' => 'cpa', 'Cre03.g207502' => 'cre', 'Cre06.g277000' => 'cre', 'Cre09.g394050' => 'cre', 'CsaV3_3G007680' => 'csa', 'CsaV3_3G009710' => 'csa', 'CsaV3_3G034790' => 'csa', 'CsaV3_5G003750' => 'csa', 'CsaV3_6G036620' => 'csa', 'CSS0002288' => 'camsi', 'CSS0011250' => 'camsi', 'CSS0021619' => 'camsi', 'CSS0046701' => 'camsi', 'DCAR_006420' => 'dca', 'DCAR_006865' => 'dca', 'DCAR_008558' => 'dca', 'DCAR_028754' => 'dca', 'DCAR_028755' => 'dca', 'Dinv31218' => 'din', 'Dinv32371' => 'din', 'Dinv34250' => 'din', 'Dinv37156' => 'din', 'Dinv43704' => 'din', 'Duzib093G1811' => 'dzi', 'Duzib106G1622' => 'dzi', 'Duzib114G0504' => 'dzi', 'Duzib128G0338' => 'dzi', 'Duzib128G1577' => 'dzi', 'Duzib133G0104' => 'dzi', 'Duzib133G1080' => 'dzi', 'Duzib138G0324' => 'dzi', 'Duzib138G0394' => 'dzi', 'Duzib205G0122' => 'dzi', 'Duzib268G1020' => 'dzi', 'Duzib268G1359' => 'dzi', 'ECA232G3929' => 'eca', 'ECA236G2210' => 'eca', 'ECA236G2287' => 'eca', 'ECA240G4568' => 'eca', 'ECA247G0894' => 'eca', 'EL10Ac1g00200' => 'bvu', 'EL10Ac1g00886' => 'bvu', 'EL10As1g23091' => 'bvu', 'EL10As1g23092' => 'bvu', 'Eucgr.A01284' => 'egr', 'Eucgr.A01285' => 'egr', 'Eucgr.D02456' => 'egr', 'Eucgr.E00018' => 'egr', 'Eucgr.E01439' => 'egr', 'Eucgr.G02859' => 'egr', 'FAN01G0168' => 'fan', 'FAN01G0453' => 'fan', 'FAN01G2761' => 'fan', 'FAN02G1239' => 'fan', 'FAN03G0645' => 'fan', 'FAN03G2707' => 'fan', 'FAN03G2978' => 'fan', 'FAN04G0227' => 'fan', 'FAN06G0091' => 'fan', 'FAN06G1418' => 'fan', 'FAN06G1512' => 'fan', 'FAN06G1986' => 'fan', 'FAN06G2905' => 'fan', 'FAN06G4325' => 'fan', 'FAN08G0033' => 'fan', 'FAN09G0642' => 'fan', 'FAN10G1763' => 'fan', 'FAN10G2026' => 'fan', 'FAN10G2513' => 'fan', 'FAN10G3402' => 'fan', 'FAN10G3564' => 'fan', 'FAN10G3987' => 'fan', 'FAN13G1490' => 'fan', 'FAN14G5857' => 'fan', 'FAN18G1188' => 'fan', 'FvH4_5g00750' => 'fve', 'FvH4_6g13410' => 'fve', 'FvH4_7g11740' => 'fve', 'FvH4_7g17410' => 'fve', 'FvH4_7g18860' => 'fve', 'Glyma.01G099100' => 'gma', 'Glyma.01G142300' => 'gma', 'Glyma.03G025500' => 'gma', 'Glyma.03G069700' => 'gma', 'Glyma.03G260000' => 'gma', 'Glyma.09G269800' => 'gma', 'Glyma.10G208700' => 'gma', 'Glyma.18G220400' => 'gma', 'Glyma.20G182000' => 'gma', 'Gohir.A01G221726' => 'ghi', 'Gohir.A07G134600' => 'ghi', 'Gohir.A07G146000' => 'ghi', 'Gohir.A08G173900' => 'ghi', 'Gohir.A09G194900' => 'ghi', 'Gohir.A10G204100' => 'ghi', 'Gohir.A11G080600' => 'ghi', 'Gohir.A11G327500' => 'ghi', 'Gohir.A12G101800' => 'ghi', 'Gohir.D01G211200' => 'ghi', 'Gohir.D07G139200' => 'ghi', 'Gohir.D07G152100' => 'ghi', 'Gohir.D08G192600' => 'ghi', 'Gohir.D09G189200' => 'ghi', 'Gohir.D10G212000' => 'ghi', 'Gohir.D11G085200' => 'ghi', 'Gohir.D11G346400' => 'ghi', 'Gohir.D12G104800' => 'ghi', 'Gorai.001G151300' => 'gra', 'Gorai.001G174100' => 'gra', 'Gorai.002G257000' => 'gra', 'Gorai.004G202600' => 'gra', 'Gorai.007G090900' => 'gra', 'Gorai.007G376700' => 'gra', 'Gorai.008G114100' => 'gra', 'Gorai.011G237900' => 'gra', 'GSVIVG01005450001' => 'vvi', 'GSVIVG01016232001' => 'vvi', 'GSVIVG01026157001' => 'vvi', 'GSVIVG01027419001' => 'vvi', 'GSVIVG01027631001' => 'vvi', 'GSVIVG01034143001' => 'vvi', 'HanXRQChr03g0093921' => 'han', 'HanXRQChr04g0120001' => 'han', 'HanXRQChr04g0122561' => 'han', 'HanXRQChr09g0246851' => 'han', 'HanXRQChr10g0293311' => 'han', 'HanXRQChr13g0425231' => 'han', 'HanXRQChr16g0532571' => 'han', 'Haze_09050' => 'cav', 'Haze_15715' => 'cav', 'Haze_15716' => 'cav', 'Haze_16803' => 'cav', 'Haze_16850' => 'cav', 'Hma1.2p1_0301F.1_g118655' => 'hma', 'Hma1.2p1_0309F.1_g120590' => 'hma', 'Hma1.2p1_0936F.1_g238900' => 'hma', 'Hma1.2p1_3552F.1_g336740' => 'hma', 'HPP92_003520' => 'vpl', 'HPP92_006628' => 'vpl', 'HPP92_006645' => 'vpl', 'HPP92_014669' => 'vpl', 'HPP92_015077' => 'vpl', 'Hund16742' => 'sun', 'Hund17022' => 'sun', 'Lalb_Chr02g0152131' => 'lal', 'Lalb_Chr05g0225371' => 'lal', 'Lalb_Chr07g0189841' => 'lal', 'Lalb_Chr07g0192961' => 'lal', 'Lalb_Chr12g0208221' => 'lal', 'Lalb_Chr13g0291211' => 'lal', 'Lalb_Chr13g0291781' => 'lal', 'Lalb_Chr18g0044651' => 'lal', 'Lalb_Chr21g0313731' => 'lal', 'Lj1g0022533' => 'lja', 'Lj2A18T50' => 'lonja', 'Lj2A92G93' => 'lonja', 'Lj3A965T73' => 'lonja', 'Lj3g0000673' => 'lja', 'Lj3g0002666' => 'lja', 'Lj4g0016985' => 'lja', 'Lj5g0003625' => 'lja', 'Lj7A529G36' => 'lonja', 'Lj9A569T49' => 'lonja', 'Lj9A604T63' => 'lonja', 'Lsat_1_v5_gn_3_132060' => 'lsa', 'Lsat_1_v5_gn_4_68941' => 'lsa', 'Lsat_1_v5_gn_5_95580' => 'lsa', 'Lsat_1_v5_gn_7_161' => 'lsa', 'Lsat_1_v5_gn_7_7041' => 'lsa', 'Lsat_1_v5_gn_9_33481' => 'lsa', 'Lsat_1_v5_gn_9_68260' => 'lsa', 'Manes.01G073100' => 'mes', 'Manes.01G266300' => 'mes', 'Manes.02G033300' => 'mes', 'Manes.05G017900' => 'mes', 'Manes.05G046100' => 'mes', 'Manes.08G080900' => 'mes', 'Manes.10G049400' => 'mes', 'Mapoly0009s0186' => 'mpo', 'Mapoly0036s0118' => 'mpo', 'Mapoly0101s0046' => 'mpo', 'MBI04_g30218_MAGBIO' => 'mbi', 'MBI04_g35564_MAGBIO' => 'mbi', 'MBI12_g34011_MAGBIO' => 'mbi', 'MBI14_g04655_MAGBIO' => 'mbi', 'MCO07G653' => 'mco', 'MCO10G173' => 'mco', 'MD01G1087100' => 'mdo', 'MD01G1104200' => 'mdo', 'MD02G1205100' => 'mdo', 'MD04G1079200' => 'mdo', 'MD04G1131400' => 'mdo', 'MD07G1121600' => 'mdo', 'MD07G1157300' => 'mdo', 'MD07G1171000' => 'mdo', 'MD12G1144500' => 'mdo', 'Medtr1g094610' => 'mtr', 'Medtr4g021795' => 'mtr', 'Medtr4g023760' => 'mtr', 'Medtr7g118050' => 'mtr', 'MELO3C005582.2' => 'cme', 'MELO3C005989.2' => 'cme', 'MELO3C006192.2' => 'cme', 'MELO3C009248.2' => 'cme', 'MELO3C019817.2' => 'cme', 'Migut.B01625' => 'egut', 'Migut.B01915' => 'egut', 'Migut.F01721' => 'egut', 'Migut.J00314' => 'egut', 'MSTRG.20742' => 'ama', 'MSTRG.8134' => 'ama', 'Nitab4.5_0000096g0010' => 'nta', 'Nitab4.5_0000202g0030' => 'nta', 'Nitab4.5_0000216g0370' => 'nta', 'Nitab4.5_0000457g0230' => 'nta', 'Nitab4.5_0001702g0170' => 'nta', 'Nitab4.5_0003607g0010' => 'nta', 'Nitab4.5_0004917g0020' => 'nta', 'Nitab4.5_0007059g0010' => 'nta', 'Nitab4.5_0007184g0010' => 'nta', 'Nitab4.5_0007346g0020' => 'nta', 'Nn1g00410' => 'nnu', 'Nn1g01252' => 'nnu', 'Nn2g11168' => 'nnu', 'Nn2g13403' => 'nnu', 'Nn2g13760' => 'nnu', 'Nn4g26380' => 'nnu', 'Oeu000806.2' => 'oeu', 'Oeu005788.1' => 'oeu', 'Oeu006900.3' => 'oeu', 'Oeu007797.1' => 'oeu', 'Oeu011932.1' => 'oeu', 'Oeu022739.1' => 'oeu', 'Oeu037918.1' => 'oeu', 'Oeu055490.2' => 'oeu', 'Os01g0844400' => 'osa', 'Os02g0819100' => 'osa', 'Os03g0804300' => 'osa', 'Os05g0458000' => 'osa', 'Os07g0467800' => 'osa', 'Os12g0602200' => 'osa', 'Peaxi162Scf00013g03444' => 'pax', 'Peaxi162Scf00094g01120' => 'pax', 'Peaxi162Scf00191g01211' => 'pax', 'Peaxi162Scf00238g01110' => 'pax', 'Peaxi162Scf00330g00719' => 'pax', 'Peaxi162Scf00627g00018' => 'pax', 'PGR031G2686' => 'pgr', 'PGR042G0809' => 'pgr', 'PGR142G0193' => 'pgr', 'PGSC0003DMG400011066' => 'stu', 'PGSC0003DMG400012041' => 'stu', 'PGSC0003DMG400013678' => 'stu', 'PGSC0003DMG400023477' => 'stu', 'PGSC0003DMG400025956' => 'stu', 'PGSC0003DMG401019151' => 'stu', 'Phvul.006G116400' => 'pvu', 'Phvul.007G097300' => 'pvu', 'Phvul.010G015000' => 'pvu', 'Phvul.010G083900' => 'pvu', 'Potri.001G117100' => 'ptr', 'Potri.002G147300' => 'ptr', 'Potri.003G115600' => 'ptr', 'Potri.006G087400' => 'ptr', 'Potri.010G226100' => 'ptr', 'Potri.014G069200' => 'ptr', 'Potri.014G104000' => 'ptr', 'Potri.016G100200' => 'ptr', 'Pp3c10_20450' => 'ppa', 'Pp3c1_42400' => 'ppa', 'Pp3c3_24390' => 'ppa', 'Pp3c3_2860' => 'ppa', 'PRCOL_00003193' => 'pco', 'Prupe.2G144500' => 'ppe', 'Prupe.2G195700' => 'ppe', 'Prupe.2G209800' => 'ppe', 'Prupe.5G080000' => 'ppe', 'Prupe.6G257900' => 'ppe', 'Psat3g001160' => 'psa', 'Psat6g181880' => 'psa', 'Psat7g233720' => 'psa', 'PSO063G7587' => 'pso', 'PSO339G2145' => 'pso', 'PSO339G3369' => 'pso', 'PSO478G2747' => 'pso', 'PSO513G0140' => 'pso', 'PSO782G1614' => 'pso', 'PSO782G4889' => 'pso', 'PSO782G5485' => 'pso', 'PSO801G0241' => 'pso', 'QL07p048854' => 'qlo', 'QL08p046745' => 'qlo', 'QL08p052606' => 'qlo', 'QL08p053414' => 'qlo', 'QL08p054868' => 'qlo', 'RcHm_v2.0_Chr1g0350251' => 'rch', 'RcHm_v2.0_Chr1g0360851' => 'rch', 'RcHm_v2.0_Chr1g0362791' => 'rch', 'RcHm_v2.0_Chr3g0466281' => 'rch', 'RcHm_v2.0_Chr7g0201481' => 'rch', 'Rhsim01G0148600' => 'rsi', 'Rhsim05G0194400' => 'rsi', 'Rhsim07G0000700' => 'rsi', 'Rhsim07G0000800' => 'rsi', 'Rhsim07G0027900' => 'rsi', 'Rhsim09G0149500' => 'rsi', 'RhsimUnG0186900' => 'rsi', 'Sabra01G0089900' => 'sbr', 'Sabra02G0114700' => 'sbr', 'Sabra02G0116300' => 'sbr', 'Sabra03G0080100' => 'sbr', 'Sabra08G0024300' => 'sbr', 'Sabra10G0174300' => 'sbr', 'Sabra14G0048900' => 'sbr', 'Sabra14G0076500' => 'sbr', 'SalBow5G2513' => 'sbo', 'Sc01g0002300' => 'sci', 'Sc01g0004450' => 'sci', 'Sc06g0001680' => 'sci', 'Sc23g0003580' => 'sci', 'Sed0000913' => 'sed', 'Sed0001655' => 'sed', 'Sed0007745' => 'sed', 'Sed0010951' => 'sed', 'Sed0017599' => 'sed', 'Sed0021405' => 'sed', 'Sed0022810' => 'sed', 'SEGI_07099' => 'sgi', 'SEGI_11931' => 'sgi', 'SEGI_13187' => 'sgi', 'SEGI_29958' => 'sgi', 'SEGI_36351' => 'sgi', 'SGA_v2.0_scaffold126G33770' => 'sas', 'SGA_v2.0_scaffold153G37003' => 'sas', 'SGA_v2.0_scaffold2G01359' => 'sas', 'SGA_v2.0_scaffold5G03064' => 'sas', 'SGA_v2.0_scaffold95G28903' => 'sas', 'SHI12701' => 'shi', 'SHI26410' => 'shi', 'SHI38997' => 'shi', 'SHI53759' => 'shi', 'SHI53886' => 'shi', 'SHI54714' => 'shi', 'SMO011G0041' => 'smo', 'SMO146G0251' => 'smo', 'SMO160G0004' => 'smo', 'SMO174G0057' => 'smo', 'SMO244G0089' => 'smo', 'SMO296G0011' => 'smo', 'Solyc01g091280.3' => 'sly', 'Solyc05g047610.3' => 'sly', 'Solyc05g047640.3' => 'sly', 'Solyc05g055630.3' => 'sly', 'Solyc10g018160.2' => 'sly', 'Solyc10g084820.2' => 'sly', 'Solyc10g086565.2' => 'sly', 'Sopen01g037030' => 'spe', 'Sopen05g027920' => 'spe', 'Sopen05g034070' => 'spe', 'Sopen10g007260' => 'spe', 'Sopen10g034260' => 'spe', 'Sopen10g035950' => 'spe', 'Sp3g07710' => 'spa', 'Sp4g27420' => 'spa', 'Sp5g02450' => 'spa', 'Sp6g01280' => 'spa', 'Sp6g38480' => 'spa', 'Sp7g20780' => 'spa', 'TAR374G1413' => 'tar', 'TAR623G1777' => 'tar', 'TAR629G2370' => 'tar', 'TAR633G1759' => 'tar', 'TAR636G3387' => 'tar', 'THA.LOC104802447' => 'tha', 'THA.LOC104813916' => 'tha', 'THA.LOC104816423' => 'tha', 'THA.LOC104817246' => 'tha', 'THA.LOC104825895' => 'tha', 'Thecc.01G335200' => 'tca', 'Thecc.01G377400' => 'tca', 'Thecc.03G262200' => 'tca', 'Thecc.05G036800' => 'tca', 'Thecc.10G080500' => 'tca', 'Thecc.10G080800' => 'tca', 'Thhalv10001560m.g' => 'esa', 'Thhalv10006120m.g' => 'esa', 'Thhalv10014375m.g' => 'esa', 'Thhalv10021264m.g' => 'esa', 'Thhalv10028856m.g' => 'esa', 'TPR.G1914' => 'tpr', 'TPR.G4757' => 'tpr', 'TPR.G5595' => 'tpr', 'TWI14G0952' => 'twi', 'TWI14G1307' => 'twi', 'TWI38G2143' => 'twi', 'TWI59G0826' => 'twi', 'TWI77G0527' => 'twi', 'TWI81G0150' => 'twi', 'unitig_21.g21018' => 'ugi', 'unitig_26.g9725' => 'ugi', 'unitig_744.g24653' => 'ugi', 'unitig_749.g13778' => 'ugi', 'unitig_899.g15035' => 'ugi', 'vmacro04296' => 'vma', 'vmacro04852' => 'vma', 'vmacro13404' => 'vma', 'vmacro20169' => 'vma', 'vmacro21014' => 'vma', 'VMungo0331G0237' => 'vmu', 'VMungo0331G0706' => 'vmu', 'VMungo0331G1361' => 'vmu', 'VMungo0331G1489' => 'vmu', 'VMungo0540G1037' => 'vmu', 'VMungo0720G2487' => 'vmu', 'VMungo0720G2721' => 'vmu', 'Zm00001eb086860' => 'zma', 'Zm00001eb104760' => 'zma', 'Zm00001eb148220' => 'zma', 'Zm00001eb259030' => 'zma', 'Zm00001eb289590' => 'zma', 'Zm00001eb420150' => 'zma' ), 'gf_id' => 'HOM05D000968', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000968' ), 'data_identifier' => 'HOM05D000968', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000968', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p31690' => 'bna', 'A03p36040' => 'bna', 'A03p53730' => 'bna', 'A04p01410' => 'bna', 'A05p05420' => 'bna', 'A05p39630' => 'bna', 'A05p39640' => 'bna', 'A09p00970' => 'bna', 'A09p53060' => 'bna', 'A10p31890' => 'bna', 'Aa31LG10G15040' => 'aar', 'Aa31LG1G21090' => 'aar', 'Aa31LG1G26900' => 'aar', 'Aa31LG3G1820' => 'aar', 'Aa31LG5G1100' => 'aar', 'Aa31LG6G4740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2265' => 'aag', 'Actinidia07998' => 'ach', 'Actinidia11266' => 'ach', 'Actinidia12682' => 'ach', 'Actinidia26479' => 'ach', 'Actinidia31406' => 'ach', 'Actinidia32437' => 'ach', 'Actinidia38862' => 'ach', 'Ah.05g174230' => 'amhyb', 'Ah.05g179070' => 'amhyb', 'Ah.05g179090' => 'amhyb', 'Ah.12g059950' => 'amhyb', 'AL3G20480' => 'aly', 'AL4G44520' => 'aly', 'AL5G43110' => 'aly', 'AL6G13890' => 'aly', 'AL6G52620' => 'aly', 'AL7G30830' => 'aly', 'Aqoxy1G00899' => 'aox', 'Aqoxy5G04333' => 'aox', 'Aqoxy7G00641' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3IZ0NN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4EF6AW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W9P8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79GA3M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C43NQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFCU6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G95YVJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCHK29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LU1UG8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX91RN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGB4B1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8DA0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9H7JI' => 'arhy', 'AT3G09320' => 'ath', 'AT3G60800' => 'ath', 'AT4G00840' => 'ath', 'AT4G22750' => 'ath', 'AT5G04270' => 'ath', 'ATR0090G003' => 'atr', 'ATR0559G349' => 'atr', 'ATR0680G261' => 'atr', 'ATR0810G048' => 'atr', 'Atru.chr12.831' => 'acertr', 'Atru.chr5.303' => 'acertr', 'Atru.chr5.748' => 'acertr', 'Atru.chr8.1999' => 'acertr', 'Atru.chr9.1436' => 'acertr', 'AUR62004211' => 'cqu', 'AUR62004548' => 'cqu', 'AUR62013637' => 'cqu', 'AUR62022662' => 'cqu', 'AUR62025777' => 'cqu', 'AUR62042386' => 'cqu', 'BcaB01g02310' => 'bca', 'BcaB01g06062' => 'bca', 'BcaB02g08975' => 'bca', 'BcaB02g08980' => 'bca', 'BcaC01g04228' => 'bca', 'BcaC01g06830' => 'bca', 'BcaC02g10186' => 'bca', 'BcaC02g12214' => 'bca', 'BcaC04g24101' => 'bca', 'BcaC05g29520' => 'bca', 'BcaC05g29661' => 'bca', 'BcaC06g32130' => 'bca', 'BcaC06g32131' => 'bca', 'BcaC07g40601' => 'bca', 'BcaC07g42641' => 'bca', 'BcaNung01038' => 'bca', 'BcaNung01676' => 'bca', 'BcaNung02480' => 'bca', 'BcaNung07376' => 'bca', 'BolC3t16146H' => 'bol', 'BolC3t16637H' => 'bol', 'BolC4t22257H' => 'bol', 'BolC4t24728H' => 'bol', 'BolC5t34517H' => 'bol', 'BolC7t45703H' => 'bol', 'BolC8t51166H' => 'bol', 'BolC9t53038H' => 'bol', 'BolC9t60000H' => 'bol', 'BraA01t01345Z' => 'bra', 'BraA01t01346Z' => 'bra', 'BraA01t01348Z' => 'bra', 'BraA03t12347Z' => 'bra', 'BraA03t12775Z' => 'bra', 'BraA03t14439Z' => 'bra', 'BraA04t15860Z' => 'bra', 'BraA05t19511Z' => 'bra', 'BraA05t22746Z' => 'bra', 'BraA09t35767Z' => 'bra', 'BraA09t40732Z' => 'bra', 'BraA10t45233Z' => 'bra', 'C03p38720' => 'bna', 'C03p43680' => 'bna', 'C04p06350' => 'bna', 'C04p31800' => 'bna', 'C05p58680' => 'bna', 'C07p52110' => 'bna', 'C08p35760' => 'bna', 'C09p01050' => 'bna', 'C09p72600' => 'bna', 'CAN.G106.2' => 'can', 'CAN.G1482.1' => 'can', 'CAN.G324.12' => 'can', 'CAN.G388.20' => 'can', 'CAN.G412.7' => 'can', 'CAN.G694.32' => 'can', 'CAN.G92.12' => 'can', 'CANSAT11G2353' => 'cansat', 'CANSAT21G1398' => 'cansat', 'CANSAT56G2456' => 'cansat', 'CANSAT56G3031' => 'cansat', 'CANSAT56G4539' => 'cansat', 'CARHR083680' => 'chi', 'CARHR171190' => 'chi', 'CARHR209010' => 'chi', 'CARHR229680' => 'chi', 'CARHR249490' => 'chi', 'Carub.0003s0844' => 'cru', 'Carub.0005s2755' => 'cru', 'Carub.0006s0322' => 'cru', 'Carub.0006s3586' => 'cru', 'Carub.0007s1855' => 'cru', 'Ca_07808_v3' => 'car', 'Ca_09535_v3' => 'car', 'Ca_10548_v3' => 'car', 'Ca_19913_v3' => 'car', 'Ca_19916_v3' => 'car', 'Ca_19975_v3' => 'car', 'CBR_g22876' => 'cbr', 'CBR_g22879' => 'cbr', 'CBR_g38491' => 'cbr', 'CBR_g54185' => 'cbr', 'CBR_g54190' => 'cbr', 'Cc02_g11020' => 'ccan', 'Cc02_g23920' => 'ccan', 'Cc02_g39860' => 'ccan', 'Cc02_g39870' => 'ccan', 'Cc03_g06760' => 'ccan', 'Cc06_g02450' => 'ccan', 'Cc09_g09450' => 'ccan', 'CDE02G1959' => 'cde', 'CDE04G0600' => 'cde', 'CDE07G1996' => 'cde', 'CDE07G2078' => 'cde', 'CDE11G0611' => 'cde', 'Cfa001683' => 'cfa', 'Cfa001734' => 'cfa', 'Cfa001737' => 'cfa', 'Cfa003751' => 'cfa', 'Cfa012019' => 'cfa', 'Cfa017353' => 'cfa', 'Cfa017732' => 'cfa', 'Cfa022464' => 'cfa', 'Ciclev10012400m.g' => 'ccl', 'Ciclev10021242m.g' => 'ccl', 'Ciclev10021302m.g' => 'ccl', 'Ciclev10021463m.g' => 'ccl', 'Ciclev10032359m.g' => 'ccl', 'CiPaw.01G081000' => 'cil', 'CiPaw.01G262500' => 'cil', 'CiPaw.01G269800' => 'cil', 'CiPaw.02G168400' => 'cil', 'CiPaw.05G119500' => 'cil', 'CiPaw.11G147300' => 'cil', 'ClCG01G003630' => 'cla', 'ClCG05G000510' => 'cla', 'ClCG05G002300' => 'cla', 'ClCG08G007650' => 'cla', 'ClCG10G021250' => 'cla', 'COL.COLO4_06218' => 'col', 'COL.COLO4_12538' => 'col', 'COL.COLO4_14775' => 'col', 'COL.COLO4_23875' => 'col', 'Cpa.g.sc141.16' => 'cpa', 'Cpa.g.sc169.16' => 'cpa', 'Cpa.g.sc244.4' => 'cpa', 'Cpa.g.sc244.5' => 'cpa', 'Cpa.g.sc29.87' => 'cpa', 'Cpa.g.sc53.115' => 'cpa', 'Cre03.g207502' => 'cre', 'Cre06.g277000' => 'cre', 'Cre09.g394050' => 'cre', 'CsaV3_3G007680' => 'csa', 'CsaV3_3G009710' => 'csa', 'CsaV3_3G034790' => 'csa', 'CsaV3_5G003750' => 'csa', 'CsaV3_6G036620' => 'csa', 'CSS0002288' => 'camsi', 'CSS0011250' => 'camsi', 'CSS0021619' => 'camsi', 'CSS0046701' => 'camsi', 'DCAR_006420' => 'dca', 'DCAR_006865' => 'dca', 'DCAR_008558' => 'dca', 'DCAR_028754' => 'dca', 'DCAR_028755' => 'dca', 'Dinv31218' => 'din', 'Dinv32371' => 'din', 'Dinv34250' => 'din', 'Dinv37156' => 'din', 'Dinv43704' => 'din', 'Duzib093G1811' => 'dzi', 'Duzib106G1622' => 'dzi', 'Duzib114G0504' => 'dzi', 'Duzib128G0338' => 'dzi', 'Duzib128G1577' => 'dzi', 'Duzib133G0104' => 'dzi', 'Duzib133G1080' => 'dzi', 'Duzib138G0324' => 'dzi', 'Duzib138G0394' => 'dzi', 'Duzib205G0122' => 'dzi', 'Duzib268G1020' => 'dzi', 'Duzib268G1359' => 'dzi', 'ECA232G3929' => 'eca', 'ECA236G2210' => 'eca', 'ECA236G2287' => 'eca', 'ECA240G4568' => 'eca', 'ECA247G0894' => 'eca', 'EL10Ac1g00200' => 'bvu', 'EL10Ac1g00886' => 'bvu', 'EL10As1g23091' => 'bvu', 'EL10As1g23092' => 'bvu', 'Eucgr.A01284' => 'egr', 'Eucgr.A01285' => 'egr', 'Eucgr.D02456' => 'egr', 'Eucgr.E00018' => 'egr', 'Eucgr.E01439' => 'egr', 'Eucgr.G02859' => 'egr', 'FAN01G0168' => 'fan', 'FAN01G0453' => 'fan', 'FAN01G2761' => 'fan', 'FAN02G1239' => 'fan', 'FAN03G0645' => 'fan', 'FAN03G2707' => 'fan', 'FAN03G2978' => 'fan', 'FAN04G0227' => 'fan', 'FAN06G0091' => 'fan', 'FAN06G1418' => 'fan', 'FAN06G1512' => 'fan', 'FAN06G1986' => 'fan', 'FAN06G2905' => 'fan', 'FAN06G4325' => 'fan', 'FAN08G0033' => 'fan', 'FAN09G0642' => 'fan', 'FAN10G1763' => 'fan', 'FAN10G2026' => 'fan', 'FAN10G2513' => 'fan', 'FAN10G3402' => 'fan', 'FAN10G3564' => 'fan', 'FAN10G3987' => 'fan', 'FAN13G1490' => 'fan', 'FAN14G5857' => 'fan', 'FAN18G1188' => 'fan', 'FvH4_5g00750' => 'fve', 'FvH4_6g13410' => 'fve', 'FvH4_7g11740' => 'fve', 'FvH4_7g17410' => 'fve', 'FvH4_7g18860' => 'fve', 'Glyma.01G099100' => 'gma', 'Glyma.01G142300' => 'gma', 'Glyma.03G025500' => 'gma', 'Glyma.03G069700' => 'gma', 'Glyma.03G260000' => 'gma', 'Glyma.09G269800' => 'gma', 'Glyma.10G208700' => 'gma', 'Glyma.18G220400' => 'gma', 'Glyma.20G182000' => 'gma', 'Gohir.A01G221726' => 'ghi', 'Gohir.A07G134600' => 'ghi', 'Gohir.A07G146000' => 'ghi', 'Gohir.A08G173900' => 'ghi', 'Gohir.A09G194900' => 'ghi', 'Gohir.A10G204100' => 'ghi', 'Gohir.A11G080600' => 'ghi', 'Gohir.A11G327500' => 'ghi', 'Gohir.A12G101800' => 'ghi', 'Gohir.D01G211200' => 'ghi', 'Gohir.D07G139200' => 'ghi', 'Gohir.D07G152100' => 'ghi', 'Gohir.D08G192600' => 'ghi', 'Gohir.D09G189200' => 'ghi', 'Gohir.D10G212000' => 'ghi', 'Gohir.D11G085200' => 'ghi', 'Gohir.D11G346400' => 'ghi', 'Gohir.D12G104800' => 'ghi', 'Gorai.001G151300' => 'gra', 'Gorai.001G174100' => 'gra', 'Gorai.002G257000' => 'gra', 'Gorai.004G202600' => 'gra', 'Gorai.007G090900' => 'gra', 'Gorai.007G376700' => 'gra', 'Gorai.008G114100' => 'gra', 'Gorai.011G237900' => 'gra', 'GSVIVG01005450001' => 'vvi', 'GSVIVG01016232001' => 'vvi', 'GSVIVG01026157001' => 'vvi', 'GSVIVG01027419001' => 'vvi', 'GSVIVG01027631001' => 'vvi', 'GSVIVG01034143001' => 'vvi', 'HanXRQChr03g0093921' => 'han', 'HanXRQChr04g0120001' => 'han', 'HanXRQChr04g0122561' => 'han', 'HanXRQChr09g0246851' => 'han', 'HanXRQChr10g0293311' => 'han', 'HanXRQChr13g0425231' => 'han', 'HanXRQChr16g0532571' => 'han', 'Haze_09050' => 'cav', 'Haze_15715' => 'cav', 'Haze_15716' => 'cav', 'Haze_16803' => 'cav', 'Haze_16850' => 'cav', 'Hma1.2p1_0301F.1_g118655' => 'hma', 'Hma1.2p1_0309F.1_g120590' => 'hma', 'Hma1.2p1_0936F.1_g238900' => 'hma', 'Hma1.2p1_3552F.1_g336740' => 'hma', 'HPP92_003520' => 'vpl', 'HPP92_006628' => 'vpl', 'HPP92_006645' => 'vpl', 'HPP92_014669' => 'vpl', 'HPP92_015077' => 'vpl', 'Hund16742' => 'sun', 'Hund17022' => 'sun', 'Lalb_Chr02g0152131' => 'lal', 'Lalb_Chr05g0225371' => 'lal', 'Lalb_Chr07g0189841' => 'lal', 'Lalb_Chr07g0192961' => 'lal', 'Lalb_Chr12g0208221' => 'lal', 'Lalb_Chr13g0291211' => 'lal', 'Lalb_Chr13g0291781' => 'lal', 'Lalb_Chr18g0044651' => 'lal', 'Lalb_Chr21g0313731' => 'lal', 'Lj1g0022533' => 'lja', 'Lj2A18T50' => 'lonja', 'Lj2A92G93' => 'lonja', 'Lj3A965T73' => 'lonja', 'Lj3g0000673' => 'lja', 'Lj3g0002666' => 'lja', 'Lj4g0016985' => 'lja', 'Lj5g0003625' => 'lja', 'Lj7A529G36' => 'lonja', 'Lj9A569T49' => 'lonja', 'Lj9A604T63' => 'lonja', 'Lsat_1_v5_gn_3_132060' => 'lsa', 'Lsat_1_v5_gn_4_68941' => 'lsa', 'Lsat_1_v5_gn_5_95580' => 'lsa', 'Lsat_1_v5_gn_7_161' => 'lsa', 'Lsat_1_v5_gn_7_7041' => 'lsa', 'Lsat_1_v5_gn_9_33481' => 'lsa', 'Lsat_1_v5_gn_9_68260' => 'lsa', 'Manes.01G073100' => 'mes', 'Manes.01G266300' => 'mes', 'Manes.02G033300' => 'mes', 'Manes.05G017900' => 'mes', 'Manes.05G046100' => 'mes', 'Manes.08G080900' => 'mes', 'Manes.10G049400' => 'mes', 'Mapoly0009s0186' => 'mpo', 'Mapoly0036s0118' => 'mpo', 'Mapoly0101s0046' => 'mpo', 'MBI04_g30218_MAGBIO' => 'mbi', 'MBI04_g35564_MAGBIO' => 'mbi', 'MBI12_g34011_MAGBIO' => 'mbi', 'MBI14_g04655_MAGBIO' => 'mbi', 'MCO07G653' => 'mco', 'MCO10G173' => 'mco', 'MD01G1087100' => 'mdo', 'MD01G1104200' => 'mdo', 'MD02G1205100' => 'mdo', 'MD04G1079200' => 'mdo', 'MD04G1131400' => 'mdo', 'MD07G1121600' => 'mdo', 'MD07G1157300' => 'mdo', 'MD07G1171000' => 'mdo', 'MD12G1144500' => 'mdo', 'Medtr1g094610' => 'mtr', 'Medtr4g021795' => 'mtr', 'Medtr4g023760' => 'mtr', 'Medtr7g118050' => 'mtr', 'MELO3C005582.2' => 'cme', 'MELO3C005989.2' => 'cme', 'MELO3C006192.2' => 'cme', 'MELO3C009248.2' => 'cme', 'MELO3C019817.2' => 'cme', 'Migut.B01625' => 'egut', 'Migut.B01915' => 'egut', 'Migut.F01721' => 'egut', 'Migut.J00314' => 'egut', 'MSTRG.20742' => 'ama', 'MSTRG.8134' => 'ama', 'Nitab4.5_0000096g0010' => 'nta', 'Nitab4.5_0000202g0030' => 'nta', 'Nitab4.5_0000216g0370' => 'nta', 'Nitab4.5_0000457g0230' => 'nta', 'Nitab4.5_0001702g0170' => 'nta', 'Nitab4.5_0003607g0010' => 'nta', 'Nitab4.5_0004917g0020' => 'nta', 'Nitab4.5_0007059g0010' => 'nta', 'Nitab4.5_0007184g0010' => 'nta', 'Nitab4.5_0007346g0020' => 'nta', 'Nn1g00410' => 'nnu', 'Nn1g01252' => 'nnu', 'Nn2g11168' => 'nnu', 'Nn2g13403' => 'nnu', 'Nn2g13760' => 'nnu', 'Nn4g26380' => 'nnu', 'Oeu000806.2' => 'oeu', 'Oeu005788.1' => 'oeu', 'Oeu006900.3' => 'oeu', 'Oeu007797.1' => 'oeu', 'Oeu011932.1' => 'oeu', 'Oeu022739.1' => 'oeu', 'Oeu037918.1' => 'oeu', 'Oeu055490.2' => 'oeu', 'Os01g0844400' => 'osa', 'Os02g0819100' => 'osa', 'Os03g0804300' => 'osa', 'Os05g0458000' => 'osa', 'Os07g0467800' => 'osa', 'Os12g0602200' => 'osa', 'Peaxi162Scf00013g03444' => 'pax', 'Peaxi162Scf00094g01120' => 'pax', 'Peaxi162Scf00191g01211' => 'pax', 'Peaxi162Scf00238g01110' => 'pax', 'Peaxi162Scf00330g00719' => 'pax', 'Peaxi162Scf00627g00018' => 'pax', 'PGR031G2686' => 'pgr', 'PGR042G0809' => 'pgr', 'PGR142G0193' => 'pgr', 'PGSC0003DMG400011066' => 'stu', 'PGSC0003DMG400012041' => 'stu', 'PGSC0003DMG400013678' => 'stu', 'PGSC0003DMG400023477' => 'stu', 'PGSC0003DMG400025956' => 'stu', 'PGSC0003DMG401019151' => 'stu', 'Phvul.006G116400' => 'pvu', 'Phvul.007G097300' => 'pvu', 'Phvul.010G015000' => 'pvu', 'Phvul.010G083900' => 'pvu', 'Potri.001G117100' => 'ptr', 'Potri.002G147300' => 'ptr', 'Potri.003G115600' => 'ptr', 'Potri.006G087400' => 'ptr', 'Potri.010G226100' => 'ptr', 'Potri.014G069200' => 'ptr', 'Potri.014G104000' => 'ptr', 'Potri.016G100200' => 'ptr', 'Pp3c10_20450' => 'ppa', 'Pp3c1_42400' => 'ppa', 'Pp3c3_24390' => 'ppa', 'Pp3c3_2860' => 'ppa', 'PRCOL_00003193' => 'pco', 'Prupe.2G144500' => 'ppe', 'Prupe.2G195700' => 'ppe', 'Prupe.2G209800' => 'ppe', 'Prupe.5G080000' => 'ppe', 'Prupe.6G257900' => 'ppe', 'Psat3g001160' => 'psa', 'Psat6g181880' => 'psa', 'Psat7g233720' => 'psa', 'PSO063G7587' => 'pso', 'PSO339G2145' => 'pso', 'PSO339G3369' => 'pso', 'PSO478G2747' => 'pso', 'PSO513G0140' => 'pso', 'PSO782G1614' => 'pso', 'PSO782G4889' => 'pso', 'PSO782G5485' => 'pso', 'PSO801G0241' => 'pso', 'QL07p048854' => 'qlo', 'QL08p046745' => 'qlo', 'QL08p052606' => 'qlo', 'QL08p053414' => 'qlo', 'QL08p054868' => 'qlo', 'RcHm_v2.0_Chr1g0350251' => 'rch', 'RcHm_v2.0_Chr1g0360851' => 'rch', 'RcHm_v2.0_Chr1g0362791' => 'rch', 'RcHm_v2.0_Chr3g0466281' => 'rch', 'RcHm_v2.0_Chr7g0201481' => 'rch', 'Rhsim01G0148600' => 'rsi', 'Rhsim05G0194400' => 'rsi', 'Rhsim07G0000700' => 'rsi', 'Rhsim07G0000800' => 'rsi', 'Rhsim07G0027900' => 'rsi', 'Rhsim09G0149500' => 'rsi', 'RhsimUnG0186900' => 'rsi', 'Sabra01G0089900' => 'sbr', 'Sabra02G0114700' => 'sbr', 'Sabra02G0116300' => 'sbr', 'Sabra03G0080100' => 'sbr', 'Sabra08G0024300' => 'sbr', 'Sabra10G0174300' => 'sbr', 'Sabra14G0048900' => 'sbr', 'Sabra14G0076500' => 'sbr', 'SalBow5G2513' => 'sbo', 'Sc01g0002300' => 'sci', 'Sc01g0004450' => 'sci', 'Sc06g0001680' => 'sci', 'Sc23g0003580' => 'sci', 'Sed0000913' => 'sed', 'Sed0001655' => 'sed', 'Sed0007745' => 'sed', 'Sed0010951' => 'sed', 'Sed0017599' => 'sed', 'Sed0021405' => 'sed', 'Sed0022810' => 'sed', 'SEGI_07099' => 'sgi', 'SEGI_11931' => 'sgi', 'SEGI_13187' => 'sgi', 'SEGI_29958' => 'sgi', 'SEGI_36351' => 'sgi', 'SGA_v2.0_scaffold126G33770' => 'sas', 'SGA_v2.0_scaffold153G37003' => 'sas', 'SGA_v2.0_scaffold2G01359' => 'sas', 'SGA_v2.0_scaffold5G03064' => 'sas', 'SGA_v2.0_scaffold95G28903' => 'sas', 'SHI12701' => 'shi', 'SHI26410' => 'shi', 'SHI38997' => 'shi', 'SHI53759' => 'shi', 'SHI53886' => 'shi', 'SHI54714' => 'shi', 'SMO011G0041' => 'smo', 'SMO146G0251' => 'smo', 'SMO160G0004' => 'smo', 'SMO174G0057' => 'smo', 'SMO244G0089' => 'smo', 'SMO296G0011' => 'smo', 'Solyc01g091280.3' => 'sly', 'Solyc05g047610.3' => 'sly', 'Solyc05g047640.3' => 'sly', 'Solyc05g055630.3' => 'sly', 'Solyc10g018160.2' => 'sly', 'Solyc10g084820.2' => 'sly', 'Solyc10g086565.2' => 'sly', 'Sopen01g037030' => 'spe', 'Sopen05g027920' => 'spe', 'Sopen05g034070' => 'spe', 'Sopen10g007260' => 'spe', 'Sopen10g034260' => 'spe', 'Sopen10g035950' => 'spe', 'Sp3g07710' => 'spa', 'Sp4g27420' => 'spa', 'Sp5g02450' => 'spa', 'Sp6g01280' => 'spa', 'Sp6g38480' => 'spa', 'Sp7g20780' => 'spa', 'TAR374G1413' => 'tar', 'TAR623G1777' => 'tar', 'TAR629G2370' => 'tar', 'TAR633G1759' => 'tar', 'TAR636G3387' => 'tar', 'THA.LOC104802447' => 'tha', 'THA.LOC104813916' => 'tha', 'THA.LOC104816423' => 'tha', 'THA.LOC104817246' => 'tha', 'THA.LOC104825895' => 'tha', 'Thecc.01G335200' => 'tca', 'Thecc.01G377400' => 'tca', 'Thecc.03G262200' => 'tca', 'Thecc.05G036800' => 'tca', 'Thecc.10G080500' => 'tca', 'Thecc.10G080800' => 'tca', 'Thhalv10001560m.g' => 'esa', 'Thhalv10006120m.g' => 'esa', 'Thhalv10014375m.g' => 'esa', 'Thhalv10021264m.g' => 'esa', 'Thhalv10028856m.g' => 'esa', 'TPR.G1914' => 'tpr', 'TPR.G4757' => 'tpr', 'TPR.G5595' => 'tpr', 'TWI14G0952' => 'twi', 'TWI14G1307' => 'twi', 'TWI38G2143' => 'twi', 'TWI59G0826' => 'twi', 'TWI77G0527' => 'twi', 'TWI81G0150' => 'twi', 'unitig_21.g21018' => 'ugi', 'unitig_26.g9725' => 'ugi', 'unitig_744.g24653' => 'ugi', 'unitig_749.g13778' => 'ugi', 'unitig_899.g15035' => 'ugi', 'vmacro04296' => 'vma', 'vmacro04852' => 'vma', 'vmacro13404' => 'vma', 'vmacro20169' => 'vma', 'vmacro21014' => 'vma', 'VMungo0331G0237' => 'vmu', 'VMungo0331G0706' => 'vmu', 'VMungo0331G1361' => 'vmu', 'VMungo0331G1489' => 'vmu', 'VMungo0540G1037' => 'vmu', 'VMungo0720G2487' => 'vmu', 'VMungo0720G2721' => 'vmu', 'Zm00001eb086860' => 'zma', 'Zm00001eb104760' => 'zma', 'Zm00001eb148220' => 'zma', 'Zm00001eb259030' => 'zma', 'Zm00001eb289590' => 'zma', 'Zm00001eb420150' => 'zma' ) $gf_id = 'HOM05D000968' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000968' ) $data_identifier = 'HOM05D000968' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 19, 'bol' => (int) 9, 'bra' => (int) 12, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 5, 'ccan' => (int) 7, 'cde' => (int) 5, 'cfa' => (int) 8, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 4, 'dca' => (int) 5, 'din' => (int) 5, 'dzi' => (int) 12, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 25, 'fve' => (int) 5, 'gma' => (int) 9, 'ghi' => (int) 18, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 7, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 5, 'sun' => (int) 2, 'lal' => (int) 9, 'lja' => (int) 5, 'lonja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 9, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 2, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 3, 'stu' => (int) 6, 'pvu' => (int) 4, 'ptr' => (int) 8, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 3, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 1, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 5, 'sas' => (int) 5, 'shi' => (int) 6, 'smo' => (int) 6, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 3, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420150' $species_info = array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ) $local_species = 'rch' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000968', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p31690' => 'bna', 'A03p36040' => 'bna', 'A03p53730' => 'bna', 'A04p01410' => 'bna', 'A05p05420' => 'bna', 'A05p39630' => 'bna', 'A05p39640' => 'bna', 'A09p00970' => 'bna', 'A09p53060' => 'bna', 'A10p31890' => 'bna', 'Aa31LG10G15040' => 'aar', 'Aa31LG1G21090' => 'aar', 'Aa31LG1G26900' => 'aar', 'Aa31LG3G1820' => 'aar', 'Aa31LG5G1100' => 'aar', 'Aa31LG6G4740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2265' => 'aag', 'Actinidia07998' => 'ach', 'Actinidia11266' => 'ach', 'Actinidia12682' => 'ach', 'Actinidia26479' => 'ach', 'Actinidia31406' => 'ach', 'Actinidia32437' => 'ach', 'Actinidia38862' => 'ach', 'Ah.05g174230' => 'amhyb', 'Ah.05g179070' => 'amhyb', 'Ah.05g179090' => 'amhyb', 'Ah.12g059950' => 'amhyb', 'AL3G20480' => 'aly', 'AL4G44520' => 'aly', 'AL5G43110' => 'aly', 'AL6G13890' => 'aly', 'AL6G52620' => 'aly', 'AL7G30830' => 'aly', 'Aqoxy1G00899' => 'aox', 'Aqoxy5G04333' => 'aox', 'Aqoxy7G00641' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3IZ0NN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4EF6AW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W9P8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79GA3M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C43NQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFCU6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G95YVJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCHK29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LU1UG8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX91RN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGB4B1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8DA0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9H7JI' => 'arhy', 'AT3G09320' => 'ath', 'AT3G60800' => 'ath', 'AT4G00840' => 'ath', 'AT4G22750' => 'ath', 'AT5G04270' => 'ath', 'ATR0090G003' => 'atr', 'ATR0559G349' => 'atr', 'ATR0680G261' => 'atr', 'ATR0810G048' => 'atr', 'Atru.chr12.831' => 'acertr', 'Atru.chr5.303' => 'acertr', 'Atru.chr5.748' => 'acertr', 'Atru.chr8.1999' => 'acertr', 'Atru.chr9.1436' => 'acertr', 'AUR62004211' => 'cqu', 'AUR62004548' => 'cqu', 'AUR62013637' => 'cqu', 'AUR62022662' => 'cqu', 'AUR62025777' => 'cqu', 'AUR62042386' => 'cqu', 'BcaB01g02310' => 'bca', 'BcaB01g06062' => 'bca', 'BcaB02g08975' => 'bca', 'BcaB02g08980' => 'bca', 'BcaC01g04228' => 'bca', 'BcaC01g06830' => 'bca', 'BcaC02g10186' => 'bca', 'BcaC02g12214' => 'bca', 'BcaC04g24101' => 'bca', 'BcaC05g29520' => 'bca', 'BcaC05g29661' => 'bca', 'BcaC06g32130' => 'bca', 'BcaC06g32131' => 'bca', 'BcaC07g40601' => 'bca', 'BcaC07g42641' => 'bca', 'BcaNung01038' => 'bca', 'BcaNung01676' => 'bca', 'BcaNung02480' => 'bca', 'BcaNung07376' => 'bca', 'BolC3t16146H' => 'bol', 'BolC3t16637H' => 'bol', 'BolC4t22257H' => 'bol', 'BolC4t24728H' => 'bol', 'BolC5t34517H' => 'bol', 'BolC7t45703H' => 'bol', 'BolC8t51166H' => 'bol', 'BolC9t53038H' => 'bol', 'BolC9t60000H' => 'bol', 'BraA01t01345Z' => 'bra', 'BraA01t01346Z' => 'bra', 'BraA01t01348Z' => 'bra', 'BraA03t12347Z' => 'bra', 'BraA03t12775Z' => 'bra', 'BraA03t14439Z' => 'bra', 'BraA04t15860Z' => 'bra', 'BraA05t19511Z' => 'bra', 'BraA05t22746Z' => 'bra', 'BraA09t35767Z' => 'bra', 'BraA09t40732Z' => 'bra', 'BraA10t45233Z' => 'bra', 'C03p38720' => 'bna', 'C03p43680' => 'bna', 'C04p06350' => 'bna', 'C04p31800' => 'bna', 'C05p58680' => 'bna', 'C07p52110' => 'bna', 'C08p35760' => 'bna', 'C09p01050' => 'bna', 'C09p72600' => 'bna', 'CAN.G106.2' => 'can', 'CAN.G1482.1' => 'can', 'CAN.G324.12' => 'can', 'CAN.G388.20' => 'can', 'CAN.G412.7' => 'can', 'CAN.G694.32' => 'can', 'CAN.G92.12' => 'can', 'CANSAT11G2353' => 'cansat', 'CANSAT21G1398' => 'cansat', 'CANSAT56G2456' => 'cansat', 'CANSAT56G3031' => 'cansat', 'CANSAT56G4539' => 'cansat', 'CARHR083680' => 'chi', 'CARHR171190' => 'chi', 'CARHR209010' => 'chi', 'CARHR229680' => 'chi', 'CARHR249490' => 'chi', 'Carub.0003s0844' => 'cru', 'Carub.0005s2755' => 'cru', 'Carub.0006s0322' => 'cru', 'Carub.0006s3586' => 'cru', 'Carub.0007s1855' => 'cru', 'Ca_07808_v3' => 'car', 'Ca_09535_v3' => 'car', 'Ca_10548_v3' => 'car', 'Ca_19913_v3' => 'car', 'Ca_19916_v3' => 'car', 'Ca_19975_v3' => 'car', 'CBR_g22876' => 'cbr', 'CBR_g22879' => 'cbr', 'CBR_g38491' => 'cbr', 'CBR_g54185' => 'cbr', 'CBR_g54190' => 'cbr', 'Cc02_g11020' => 'ccan', 'Cc02_g23920' => 'ccan', 'Cc02_g39860' => 'ccan', 'Cc02_g39870' => 'ccan', 'Cc03_g06760' => 'ccan', 'Cc06_g02450' => 'ccan', 'Cc09_g09450' => 'ccan', 'CDE02G1959' => 'cde', 'CDE04G0600' => 'cde', 'CDE07G1996' => 'cde', 'CDE07G2078' => 'cde', 'CDE11G0611' => 'cde', 'Cfa001683' => 'cfa', 'Cfa001734' => 'cfa', 'Cfa001737' => 'cfa', 'Cfa003751' => 'cfa', 'Cfa012019' => 'cfa', 'Cfa017353' => 'cfa', 'Cfa017732' => 'cfa', 'Cfa022464' => 'cfa', 'Ciclev10012400m.g' => 'ccl', 'Ciclev10021242m.g' => 'ccl', 'Ciclev10021302m.g' => 'ccl', 'Ciclev10021463m.g' => 'ccl', 'Ciclev10032359m.g' => 'ccl', 'CiPaw.01G081000' => 'cil', 'CiPaw.01G262500' => 'cil', 'CiPaw.01G269800' => 'cil', 'CiPaw.02G168400' => 'cil', 'CiPaw.05G119500' => 'cil', 'CiPaw.11G147300' => 'cil', 'ClCG01G003630' => 'cla', 'ClCG05G000510' => 'cla', 'ClCG05G002300' => 'cla', 'ClCG08G007650' => 'cla', 'ClCG10G021250' => 'cla', 'COL.COLO4_06218' => 'col', 'COL.COLO4_12538' => 'col', 'COL.COLO4_14775' => 'col', 'COL.COLO4_23875' => 'col', 'Cpa.g.sc141.16' => 'cpa', 'Cpa.g.sc169.16' => 'cpa', 'Cpa.g.sc244.4' => 'cpa', 'Cpa.g.sc244.5' => 'cpa', 'Cpa.g.sc29.87' => 'cpa', 'Cpa.g.sc53.115' => 'cpa', 'Cre03.g207502' => 'cre', 'Cre06.g277000' => 'cre', 'Cre09.g394050' => 'cre', 'CsaV3_3G007680' => 'csa', 'CsaV3_3G009710' => 'csa', 'CsaV3_3G034790' => 'csa', 'CsaV3_5G003750' => 'csa', 'CsaV3_6G036620' => 'csa', 'CSS0002288' => 'camsi', 'CSS0011250' => 'camsi', 'CSS0021619' => 'camsi', 'CSS0046701' => 'camsi', 'DCAR_006420' => 'dca', 'DCAR_006865' => 'dca', 'DCAR_008558' => 'dca', 'DCAR_028754' => 'dca', 'DCAR_028755' => 'dca', 'Dinv31218' => 'din', 'Dinv32371' => 'din', 'Dinv34250' => 'din', 'Dinv37156' => 'din', 'Dinv43704' => 'din', 'Duzib093G1811' => 'dzi', 'Duzib106G1622' => 'dzi', 'Duzib114G0504' => 'dzi', 'Duzib128G0338' => 'dzi', 'Duzib128G1577' => 'dzi', 'Duzib133G0104' => 'dzi', 'Duzib133G1080' => 'dzi', 'Duzib138G0324' => 'dzi', 'Duzib138G0394' => 'dzi', 'Duzib205G0122' => 'dzi', 'Duzib268G1020' => 'dzi', 'Duzib268G1359' => 'dzi', 'ECA232G3929' => 'eca', 'ECA236G2210' => 'eca', 'ECA236G2287' => 'eca', 'ECA240G4568' => 'eca', 'ECA247G0894' => 'eca', 'EL10Ac1g00200' => 'bvu', 'EL10Ac1g00886' => 'bvu', 'EL10As1g23091' => 'bvu', 'EL10As1g23092' => 'bvu', 'Eucgr.A01284' => 'egr', 'Eucgr.A01285' => 'egr', 'Eucgr.D02456' => 'egr', 'Eucgr.E00018' => 'egr', 'Eucgr.E01439' => 'egr', 'Eucgr.G02859' => 'egr', 'FAN01G0168' => 'fan', 'FAN01G0453' => 'fan', 'FAN01G2761' => 'fan', 'FAN02G1239' => 'fan', 'FAN03G0645' => 'fan', 'FAN03G2707' => 'fan', 'FAN03G2978' => 'fan', 'FAN04G0227' => 'fan', 'FAN06G0091' => 'fan', 'FAN06G1418' => 'fan', 'FAN06G1512' => 'fan', 'FAN06G1986' => 'fan', 'FAN06G2905' => 'fan', 'FAN06G4325' => 'fan', 'FAN08G0033' => 'fan', 'FAN09G0642' => 'fan', 'FAN10G1763' => 'fan', 'FAN10G2026' => 'fan', 'FAN10G2513' => 'fan', 'FAN10G3402' => 'fan', 'FAN10G3564' => 'fan', 'FAN10G3987' => 'fan', 'FAN13G1490' => 'fan', 'FAN14G5857' => 'fan', 'FAN18G1188' => 'fan', 'FvH4_5g00750' => 'fve', 'FvH4_6g13410' => 'fve', 'FvH4_7g11740' => 'fve', 'FvH4_7g17410' => 'fve', 'FvH4_7g18860' => 'fve', 'Glyma.01G099100' => 'gma', 'Glyma.01G142300' => 'gma', 'Glyma.03G025500' => 'gma', 'Glyma.03G069700' => 'gma', 'Glyma.03G260000' => 'gma', 'Glyma.09G269800' => 'gma', 'Glyma.10G208700' => 'gma', 'Glyma.18G220400' => 'gma', 'Glyma.20G182000' => 'gma', 'Gohir.A01G221726' => 'ghi', 'Gohir.A07G134600' => 'ghi', 'Gohir.A07G146000' => 'ghi', 'Gohir.A08G173900' => 'ghi', 'Gohir.A09G194900' => 'ghi', 'Gohir.A10G204100' => 'ghi', 'Gohir.A11G080600' => 'ghi', 'Gohir.A11G327500' => 'ghi', 'Gohir.A12G101800' => 'ghi', 'Gohir.D01G211200' => 'ghi', 'Gohir.D07G139200' => 'ghi', 'Gohir.D07G152100' => 'ghi', 'Gohir.D08G192600' => 'ghi', 'Gohir.D09G189200' => 'ghi', 'Gohir.D10G212000' => 'ghi', 'Gohir.D11G085200' => 'ghi', 'Gohir.D11G346400' => 'ghi', 'Gohir.D12G104800' => 'ghi', 'Gorai.001G151300' => 'gra', 'Gorai.001G174100' => 'gra', 'Gorai.002G257000' => 'gra', 'Gorai.004G202600' => 'gra', 'Gorai.007G090900' => 'gra', 'Gorai.007G376700' => 'gra', 'Gorai.008G114100' => 'gra', 'Gorai.011G237900' => 'gra', 'GSVIVG01005450001' => 'vvi', 'GSVIVG01016232001' => 'vvi', 'GSVIVG01026157001' => 'vvi', 'GSVIVG01027419001' => 'vvi', 'GSVIVG01027631001' => 'vvi', 'GSVIVG01034143001' => 'vvi', 'HanXRQChr03g0093921' => 'han', 'HanXRQChr04g0120001' => 'han', 'HanXRQChr04g0122561' => 'han', 'HanXRQChr09g0246851' => 'han', 'HanXRQChr10g0293311' => 'han', 'HanXRQChr13g0425231' => 'han', 'HanXRQChr16g0532571' => 'han', 'Haze_09050' => 'cav', 'Haze_15715' => 'cav', 'Haze_15716' => 'cav', 'Haze_16803' => 'cav', 'Haze_16850' => 'cav', 'Hma1.2p1_0301F.1_g118655' => 'hma', 'Hma1.2p1_0309F.1_g120590' => 'hma', 'Hma1.2p1_0936F.1_g238900' => 'hma', 'Hma1.2p1_3552F.1_g336740' => 'hma', 'HPP92_003520' => 'vpl', 'HPP92_006628' => 'vpl', 'HPP92_006645' => 'vpl', 'HPP92_014669' => 'vpl', 'HPP92_015077' => 'vpl', 'Hund16742' => 'sun', 'Hund17022' => 'sun', 'Lalb_Chr02g0152131' => 'lal', 'Lalb_Chr05g0225371' => 'lal', 'Lalb_Chr07g0189841' => 'lal', 'Lalb_Chr07g0192961' => 'lal', 'Lalb_Chr12g0208221' => 'lal', 'Lalb_Chr13g0291211' => 'lal', 'Lalb_Chr13g0291781' => 'lal', 'Lalb_Chr18g0044651' => 'lal', 'Lalb_Chr21g0313731' => 'lal', 'Lj1g0022533' => 'lja', 'Lj2A18T50' => 'lonja', 'Lj2A92G93' => 'lonja', 'Lj3A965T73' => 'lonja', 'Lj3g0000673' => 'lja', 'Lj3g0002666' => 'lja', 'Lj4g0016985' => 'lja', 'Lj5g0003625' => 'lja', 'Lj7A529G36' => 'lonja', 'Lj9A569T49' => 'lonja', 'Lj9A604T63' => 'lonja', 'Lsat_1_v5_gn_3_132060' => 'lsa', 'Lsat_1_v5_gn_4_68941' => 'lsa', 'Lsat_1_v5_gn_5_95580' => 'lsa', 'Lsat_1_v5_gn_7_161' => 'lsa', 'Lsat_1_v5_gn_7_7041' => 'lsa', 'Lsat_1_v5_gn_9_33481' => 'lsa', 'Lsat_1_v5_gn_9_68260' => 'lsa', 'Manes.01G073100' => 'mes', 'Manes.01G266300' => 'mes', 'Manes.02G033300' => 'mes', 'Manes.05G017900' => 'mes', 'Manes.05G046100' => 'mes', 'Manes.08G080900' => 'mes', 'Manes.10G049400' => 'mes', 'Mapoly0009s0186' => 'mpo', 'Mapoly0036s0118' => 'mpo', 'Mapoly0101s0046' => 'mpo', 'MBI04_g30218_MAGBIO' => 'mbi', 'MBI04_g35564_MAGBIO' => 'mbi', 'MBI12_g34011_MAGBIO' => 'mbi', 'MBI14_g04655_MAGBIO' => 'mbi', 'MCO07G653' => 'mco', 'MCO10G173' => 'mco', 'MD01G1087100' => 'mdo', 'MD01G1104200' => 'mdo', 'MD02G1205100' => 'mdo', 'MD04G1079200' => 'mdo', 'MD04G1131400' => 'mdo', 'MD07G1121600' => 'mdo', 'MD07G1157300' => 'mdo', 'MD07G1171000' => 'mdo', 'MD12G1144500' => 'mdo', 'Medtr1g094610' => 'mtr', 'Medtr4g021795' => 'mtr', 'Medtr4g023760' => 'mtr', 'Medtr7g118050' => 'mtr', 'MELO3C005582.2' => 'cme', 'MELO3C005989.2' => 'cme', 'MELO3C006192.2' => 'cme', 'MELO3C009248.2' => 'cme', 'MELO3C019817.2' => 'cme', 'Migut.B01625' => 'egut', 'Migut.B01915' => 'egut', 'Migut.F01721' => 'egut', 'Migut.J00314' => 'egut', 'MSTRG.20742' => 'ama', 'MSTRG.8134' => 'ama', 'Nitab4.5_0000096g0010' => 'nta', 'Nitab4.5_0000202g0030' => 'nta', 'Nitab4.5_0000216g0370' => 'nta', 'Nitab4.5_0000457g0230' => 'nta', 'Nitab4.5_0001702g0170' => 'nta', 'Nitab4.5_0003607g0010' => 'nta', 'Nitab4.5_0004917g0020' => 'nta', 'Nitab4.5_0007059g0010' => 'nta', 'Nitab4.5_0007184g0010' => 'nta', 'Nitab4.5_0007346g0020' => 'nta', 'Nn1g00410' => 'nnu', 'Nn1g01252' => 'nnu', 'Nn2g11168' => 'nnu', 'Nn2g13403' => 'nnu', 'Nn2g13760' => 'nnu', 'Nn4g26380' => 'nnu', 'Oeu000806.2' => 'oeu', 'Oeu005788.1' => 'oeu', 'Oeu006900.3' => 'oeu', 'Oeu007797.1' => 'oeu', 'Oeu011932.1' => 'oeu', 'Oeu022739.1' => 'oeu', 'Oeu037918.1' => 'oeu', 'Oeu055490.2' => 'oeu', 'Os01g0844400' => 'osa', 'Os02g0819100' => 'osa', 'Os03g0804300' => 'osa', 'Os05g0458000' => 'osa', 'Os07g0467800' => 'osa', 'Os12g0602200' => 'osa', 'Peaxi162Scf00013g03444' => 'pax', 'Peaxi162Scf00094g01120' => 'pax', 'Peaxi162Scf00191g01211' => 'pax', 'Peaxi162Scf00238g01110' => 'pax', 'Peaxi162Scf00330g00719' => 'pax', 'Peaxi162Scf00627g00018' => 'pax', 'PGR031G2686' => 'pgr', 'PGR042G0809' => 'pgr', 'PGR142G0193' => 'pgr', 'PGSC0003DMG400011066' => 'stu', 'PGSC0003DMG400012041' => 'stu', 'PGSC0003DMG400013678' => 'stu', 'PGSC0003DMG400023477' => 'stu', 'PGSC0003DMG400025956' => 'stu', 'PGSC0003DMG401019151' => 'stu', 'Phvul.006G116400' => 'pvu', 'Phvul.007G097300' => 'pvu', 'Phvul.010G015000' => 'pvu', 'Phvul.010G083900' => 'pvu', 'Potri.001G117100' => 'ptr', 'Potri.002G147300' => 'ptr', 'Potri.003G115600' => 'ptr', 'Potri.006G087400' => 'ptr', 'Potri.010G226100' => 'ptr', 'Potri.014G069200' => 'ptr', 'Potri.014G104000' => 'ptr', 'Potri.016G100200' => 'ptr', 'Pp3c10_20450' => 'ppa', 'Pp3c1_42400' => 'ppa', 'Pp3c3_24390' => 'ppa', 'Pp3c3_2860' => 'ppa', 'PRCOL_00003193' => 'pco', 'Prupe.2G144500' => 'ppe', 'Prupe.2G195700' => 'ppe', 'Prupe.2G209800' => 'ppe', 'Prupe.5G080000' => 'ppe', 'Prupe.6G257900' => 'ppe', 'Psat3g001160' => 'psa', 'Psat6g181880' => 'psa', 'Psat7g233720' => 'psa', 'PSO063G7587' => 'pso', 'PSO339G2145' => 'pso', 'PSO339G3369' => 'pso', 'PSO478G2747' => 'pso', 'PSO513G0140' => 'pso', 'PSO782G1614' => 'pso', 'PSO782G4889' => 'pso', 'PSO782G5485' => 'pso', 'PSO801G0241' => 'pso', 'QL07p048854' => 'qlo', 'QL08p046745' => 'qlo', 'QL08p052606' => 'qlo', 'QL08p053414' => 'qlo', 'QL08p054868' => 'qlo', 'RcHm_v2.0_Chr1g0350251' => 'rch', 'RcHm_v2.0_Chr1g0360851' => 'rch', 'RcHm_v2.0_Chr1g0362791' => 'rch', 'RcHm_v2.0_Chr3g0466281' => 'rch', 'RcHm_v2.0_Chr7g0201481' => 'rch', 'Rhsim01G0148600' => 'rsi', 'Rhsim05G0194400' => 'rsi', 'Rhsim07G0000700' => 'rsi', 'Rhsim07G0000800' => 'rsi', 'Rhsim07G0027900' => 'rsi', 'Rhsim09G0149500' => 'rsi', 'RhsimUnG0186900' => 'rsi', 'Sabra01G0089900' => 'sbr', 'Sabra02G0114700' => 'sbr', 'Sabra02G0116300' => 'sbr', 'Sabra03G0080100' => 'sbr', 'Sabra08G0024300' => 'sbr', 'Sabra10G0174300' => 'sbr', 'Sabra14G0048900' => 'sbr', 'Sabra14G0076500' => 'sbr', 'SalBow5G2513' => 'sbo', 'Sc01g0002300' => 'sci', 'Sc01g0004450' => 'sci', 'Sc06g0001680' => 'sci', 'Sc23g0003580' => 'sci', 'Sed0000913' => 'sed', 'Sed0001655' => 'sed', 'Sed0007745' => 'sed', 'Sed0010951' => 'sed', 'Sed0017599' => 'sed', 'Sed0021405' => 'sed', 'Sed0022810' => 'sed', 'SEGI_07099' => 'sgi', 'SEGI_11931' => 'sgi', 'SEGI_13187' => 'sgi', 'SEGI_29958' => 'sgi', 'SEGI_36351' => 'sgi', 'SGA_v2.0_scaffold126G33770' => 'sas', 'SGA_v2.0_scaffold153G37003' => 'sas', 'SGA_v2.0_scaffold2G01359' => 'sas', 'SGA_v2.0_scaffold5G03064' => 'sas', 'SGA_v2.0_scaffold95G28903' => 'sas', 'SHI12701' => 'shi', 'SHI26410' => 'shi', 'SHI38997' => 'shi', 'SHI53759' => 'shi', 'SHI53886' => 'shi', 'SHI54714' => 'shi', 'SMO011G0041' => 'smo', 'SMO146G0251' => 'smo', 'SMO160G0004' => 'smo', 'SMO174G0057' => 'smo', 'SMO244G0089' => 'smo', 'SMO296G0011' => 'smo', 'Solyc01g091280.3' => 'sly', 'Solyc05g047610.3' => 'sly', 'Solyc05g047640.3' => 'sly', 'Solyc05g055630.3' => 'sly', 'Solyc10g018160.2' => 'sly', 'Solyc10g084820.2' => 'sly', 'Solyc10g086565.2' => 'sly', 'Sopen01g037030' => 'spe', 'Sopen05g027920' => 'spe', 'Sopen05g034070' => 'spe', 'Sopen10g007260' => 'spe', 'Sopen10g034260' => 'spe', 'Sopen10g035950' => 'spe', 'Sp3g07710' => 'spa', 'Sp4g27420' => 'spa', 'Sp5g02450' => 'spa', 'Sp6g01280' => 'spa', 'Sp6g38480' => 'spa', 'Sp7g20780' => 'spa', 'TAR374G1413' => 'tar', 'TAR623G1777' => 'tar', 'TAR629G2370' => 'tar', 'TAR633G1759' => 'tar', 'TAR636G3387' => 'tar', 'THA.LOC104802447' => 'tha', 'THA.LOC104813916' => 'tha', 'THA.LOC104816423' => 'tha', 'THA.LOC104817246' => 'tha', 'THA.LOC104825895' => 'tha', 'Thecc.01G335200' => 'tca', 'Thecc.01G377400' => 'tca', 'Thecc.03G262200' => 'tca', 'Thecc.05G036800' => 'tca', 'Thecc.10G080500' => 'tca', 'Thecc.10G080800' => 'tca', 'Thhalv10001560m.g' => 'esa', 'Thhalv10006120m.g' => 'esa', 'Thhalv10014375m.g' => 'esa', 'Thhalv10021264m.g' => 'esa', 'Thhalv10028856m.g' => 'esa', 'TPR.G1914' => 'tpr', 'TPR.G4757' => 'tpr', 'TPR.G5595' => 'tpr', 'TWI14G0952' => 'twi', 'TWI14G1307' => 'twi', 'TWI38G2143' => 'twi', 'TWI59G0826' => 'twi', 'TWI77G0527' => 'twi', 'TWI81G0150' => 'twi', 'unitig_21.g21018' => 'ugi', 'unitig_26.g9725' => 'ugi', 'unitig_744.g24653' => 'ugi', 'unitig_749.g13778' => 'ugi', 'unitig_899.g15035' => 'ugi', 'vmacro04296' => 'vma', 'vmacro04852' => 'vma', 'vmacro13404' => 'vma', 'vmacro20169' => 'vma', 'vmacro21014' => 'vma', 'VMungo0331G0237' => 'vmu', 'VMungo0331G0706' => 'vmu', 'VMungo0331G1361' => 'vmu', 'VMungo0331G1489' => 'vmu', 'VMungo0540G1037' => 'vmu', 'VMungo0720G2487' => 'vmu', 'VMungo0720G2721' => 'vmu', 'Zm00001eb086860' => 'zma', 'Zm00001eb104760' => 'zma', 'Zm00001eb148220' => 'zma', 'Zm00001eb259030' => 'zma', 'Zm00001eb289590' => 'zma', 'Zm00001eb420150' => 'zma' ), 'gf_id' => 'HOM05D000968', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000968' ), 'data_identifier' => 'HOM05D000968', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000968', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p31690' => 'bna', 'A03p36040' => 'bna', 'A03p53730' => 'bna', 'A04p01410' => 'bna', 'A05p05420' => 'bna', 'A05p39630' => 'bna', 'A05p39640' => 'bna', 'A09p00970' => 'bna', 'A09p53060' => 'bna', 'A10p31890' => 'bna', 'Aa31LG10G15040' => 'aar', 'Aa31LG1G21090' => 'aar', 'Aa31LG1G26900' => 'aar', 'Aa31LG3G1820' => 'aar', 'Aa31LG5G1100' => 'aar', 'Aa31LG6G4740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2265' => 'aag', 'Actinidia07998' => 'ach', 'Actinidia11266' => 'ach', 'Actinidia12682' => 'ach', 'Actinidia26479' => 'ach', 'Actinidia31406' => 'ach', 'Actinidia32437' => 'ach', 'Actinidia38862' => 'ach', 'Ah.05g174230' => 'amhyb', 'Ah.05g179070' => 'amhyb', 'Ah.05g179090' => 'amhyb', 'Ah.12g059950' => 'amhyb', 'AL3G20480' => 'aly', 'AL4G44520' => 'aly', 'AL5G43110' => 'aly', 'AL6G13890' => 'aly', 'AL6G52620' => 'aly', 'AL7G30830' => 'aly', 'Aqoxy1G00899' => 'aox', 'Aqoxy5G04333' => 'aox', 'Aqoxy7G00641' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3IZ0NN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4EF6AW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W9P8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79GA3M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C43NQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFCU6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G95YVJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCHK29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LU1UG8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX91RN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGB4B1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8DA0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9H7JI' => 'arhy', 'AT3G09320' => 'ath', 'AT3G60800' => 'ath', 'AT4G00840' => 'ath', 'AT4G22750' => 'ath', 'AT5G04270' => 'ath', 'ATR0090G003' => 'atr', 'ATR0559G349' => 'atr', 'ATR0680G261' => 'atr', 'ATR0810G048' => 'atr', 'Atru.chr12.831' => 'acertr', 'Atru.chr5.303' => 'acertr', 'Atru.chr5.748' => 'acertr', 'Atru.chr8.1999' => 'acertr', 'Atru.chr9.1436' => 'acertr', 'AUR62004211' => 'cqu', 'AUR62004548' => 'cqu', 'AUR62013637' => 'cqu', 'AUR62022662' => 'cqu', 'AUR62025777' => 'cqu', 'AUR62042386' => 'cqu', 'BcaB01g02310' => 'bca', 'BcaB01g06062' => 'bca', 'BcaB02g08975' => 'bca', 'BcaB02g08980' => 'bca', 'BcaC01g04228' => 'bca', 'BcaC01g06830' => 'bca', 'BcaC02g10186' => 'bca', 'BcaC02g12214' => 'bca', 'BcaC04g24101' => 'bca', 'BcaC05g29520' => 'bca', 'BcaC05g29661' => 'bca', 'BcaC06g32130' => 'bca', 'BcaC06g32131' => 'bca', 'BcaC07g40601' => 'bca', 'BcaC07g42641' => 'bca', 'BcaNung01038' => 'bca', 'BcaNung01676' => 'bca', 'BcaNung02480' => 'bca', 'BcaNung07376' => 'bca', 'BolC3t16146H' => 'bol', 'BolC3t16637H' => 'bol', 'BolC4t22257H' => 'bol', 'BolC4t24728H' => 'bol', 'BolC5t34517H' => 'bol', 'BolC7t45703H' => 'bol', 'BolC8t51166H' => 'bol', 'BolC9t53038H' => 'bol', 'BolC9t60000H' => 'bol', 'BraA01t01345Z' => 'bra', 'BraA01t01346Z' => 'bra', 'BraA01t01348Z' => 'bra', 'BraA03t12347Z' => 'bra', 'BraA03t12775Z' => 'bra', 'BraA03t14439Z' => 'bra', 'BraA04t15860Z' => 'bra', 'BraA05t19511Z' => 'bra', 'BraA05t22746Z' => 'bra', 'BraA09t35767Z' => 'bra', 'BraA09t40732Z' => 'bra', 'BraA10t45233Z' => 'bra', 'C03p38720' => 'bna', 'C03p43680' => 'bna', 'C04p06350' => 'bna', 'C04p31800' => 'bna', 'C05p58680' => 'bna', 'C07p52110' => 'bna', 'C08p35760' => 'bna', 'C09p01050' => 'bna', 'C09p72600' => 'bna', 'CAN.G106.2' => 'can', 'CAN.G1482.1' => 'can', 'CAN.G324.12' => 'can', 'CAN.G388.20' => 'can', 'CAN.G412.7' => 'can', 'CAN.G694.32' => 'can', 'CAN.G92.12' => 'can', 'CANSAT11G2353' => 'cansat', 'CANSAT21G1398' => 'cansat', 'CANSAT56G2456' => 'cansat', 'CANSAT56G3031' => 'cansat', 'CANSAT56G4539' => 'cansat', 'CARHR083680' => 'chi', 'CARHR171190' => 'chi', 'CARHR209010' => 'chi', 'CARHR229680' => 'chi', 'CARHR249490' => 'chi', 'Carub.0003s0844' => 'cru', 'Carub.0005s2755' => 'cru', 'Carub.0006s0322' => 'cru', 'Carub.0006s3586' => 'cru', 'Carub.0007s1855' => 'cru', 'Ca_07808_v3' => 'car', 'Ca_09535_v3' => 'car', 'Ca_10548_v3' => 'car', 'Ca_19913_v3' => 'car', 'Ca_19916_v3' => 'car', 'Ca_19975_v3' => 'car', 'CBR_g22876' => 'cbr', 'CBR_g22879' => 'cbr', 'CBR_g38491' => 'cbr', 'CBR_g54185' => 'cbr', 'CBR_g54190' => 'cbr', 'Cc02_g11020' => 'ccan', 'Cc02_g23920' => 'ccan', 'Cc02_g39860' => 'ccan', 'Cc02_g39870' => 'ccan', 'Cc03_g06760' => 'ccan', 'Cc06_g02450' => 'ccan', 'Cc09_g09450' => 'ccan', 'CDE02G1959' => 'cde', 'CDE04G0600' => 'cde', 'CDE07G1996' => 'cde', 'CDE07G2078' => 'cde', 'CDE11G0611' => 'cde', 'Cfa001683' => 'cfa', 'Cfa001734' => 'cfa', 'Cfa001737' => 'cfa', 'Cfa003751' => 'cfa', 'Cfa012019' => 'cfa', 'Cfa017353' => 'cfa', 'Cfa017732' => 'cfa', 'Cfa022464' => 'cfa', 'Ciclev10012400m.g' => 'ccl', 'Ciclev10021242m.g' => 'ccl', 'Ciclev10021302m.g' => 'ccl', 'Ciclev10021463m.g' => 'ccl', 'Ciclev10032359m.g' => 'ccl', 'CiPaw.01G081000' => 'cil', 'CiPaw.01G262500' => 'cil', 'CiPaw.01G269800' => 'cil', 'CiPaw.02G168400' => 'cil', 'CiPaw.05G119500' => 'cil', 'CiPaw.11G147300' => 'cil', 'ClCG01G003630' => 'cla', 'ClCG05G000510' => 'cla', 'ClCG05G002300' => 'cla', 'ClCG08G007650' => 'cla', 'ClCG10G021250' => 'cla', 'COL.COLO4_06218' => 'col', 'COL.COLO4_12538' => 'col', 'COL.COLO4_14775' => 'col', 'COL.COLO4_23875' => 'col', 'Cpa.g.sc141.16' => 'cpa', 'Cpa.g.sc169.16' => 'cpa', 'Cpa.g.sc244.4' => 'cpa', 'Cpa.g.sc244.5' => 'cpa', 'Cpa.g.sc29.87' => 'cpa', 'Cpa.g.sc53.115' => 'cpa', 'Cre03.g207502' => 'cre', 'Cre06.g277000' => 'cre', 'Cre09.g394050' => 'cre', 'CsaV3_3G007680' => 'csa', 'CsaV3_3G009710' => 'csa', 'CsaV3_3G034790' => 'csa', 'CsaV3_5G003750' => 'csa', 'CsaV3_6G036620' => 'csa', 'CSS0002288' => 'camsi', 'CSS0011250' => 'camsi', 'CSS0021619' => 'camsi', 'CSS0046701' => 'camsi', 'DCAR_006420' => 'dca', 'DCAR_006865' => 'dca', 'DCAR_008558' => 'dca', 'DCAR_028754' => 'dca', 'DCAR_028755' => 'dca', 'Dinv31218' => 'din', 'Dinv32371' => 'din', 'Dinv34250' => 'din', 'Dinv37156' => 'din', 'Dinv43704' => 'din', 'Duzib093G1811' => 'dzi', 'Duzib106G1622' => 'dzi', 'Duzib114G0504' => 'dzi', 'Duzib128G0338' => 'dzi', 'Duzib128G1577' => 'dzi', 'Duzib133G0104' => 'dzi', 'Duzib133G1080' => 'dzi', 'Duzib138G0324' => 'dzi', 'Duzib138G0394' => 'dzi', 'Duzib205G0122' => 'dzi', 'Duzib268G1020' => 'dzi', 'Duzib268G1359' => 'dzi', 'ECA232G3929' => 'eca', 'ECA236G2210' => 'eca', 'ECA236G2287' => 'eca', 'ECA240G4568' => 'eca', 'ECA247G0894' => 'eca', 'EL10Ac1g00200' => 'bvu', 'EL10Ac1g00886' => 'bvu', 'EL10As1g23091' => 'bvu', 'EL10As1g23092' => 'bvu', 'Eucgr.A01284' => 'egr', 'Eucgr.A01285' => 'egr', 'Eucgr.D02456' => 'egr', 'Eucgr.E00018' => 'egr', 'Eucgr.E01439' => 'egr', 'Eucgr.G02859' => 'egr', 'FAN01G0168' => 'fan', 'FAN01G0453' => 'fan', 'FAN01G2761' => 'fan', 'FAN02G1239' => 'fan', 'FAN03G0645' => 'fan', 'FAN03G2707' => 'fan', 'FAN03G2978' => 'fan', 'FAN04G0227' => 'fan', 'FAN06G0091' => 'fan', 'FAN06G1418' => 'fan', 'FAN06G1512' => 'fan', 'FAN06G1986' => 'fan', 'FAN06G2905' => 'fan', 'FAN06G4325' => 'fan', 'FAN08G0033' => 'fan', 'FAN09G0642' => 'fan', 'FAN10G1763' => 'fan', 'FAN10G2026' => 'fan', 'FAN10G2513' => 'fan', 'FAN10G3402' => 'fan', 'FAN10G3564' => 'fan', 'FAN10G3987' => 'fan', 'FAN13G1490' => 'fan', 'FAN14G5857' => 'fan', 'FAN18G1188' => 'fan', 'FvH4_5g00750' => 'fve', 'FvH4_6g13410' => 'fve', 'FvH4_7g11740' => 'fve', 'FvH4_7g17410' => 'fve', 'FvH4_7g18860' => 'fve', 'Glyma.01G099100' => 'gma', 'Glyma.01G142300' => 'gma', 'Glyma.03G025500' => 'gma', 'Glyma.03G069700' => 'gma', 'Glyma.03G260000' => 'gma', 'Glyma.09G269800' => 'gma', 'Glyma.10G208700' => 'gma', 'Glyma.18G220400' => 'gma', 'Glyma.20G182000' => 'gma', 'Gohir.A01G221726' => 'ghi', 'Gohir.A07G134600' => 'ghi', 'Gohir.A07G146000' => 'ghi', 'Gohir.A08G173900' => 'ghi', 'Gohir.A09G194900' => 'ghi', 'Gohir.A10G204100' => 'ghi', 'Gohir.A11G080600' => 'ghi', 'Gohir.A11G327500' => 'ghi', 'Gohir.A12G101800' => 'ghi', 'Gohir.D01G211200' => 'ghi', 'Gohir.D07G139200' => 'ghi', 'Gohir.D07G152100' => 'ghi', 'Gohir.D08G192600' => 'ghi', 'Gohir.D09G189200' => 'ghi', 'Gohir.D10G212000' => 'ghi', 'Gohir.D11G085200' => 'ghi', 'Gohir.D11G346400' => 'ghi', 'Gohir.D12G104800' => 'ghi', 'Gorai.001G151300' => 'gra', 'Gorai.001G174100' => 'gra', 'Gorai.002G257000' => 'gra', 'Gorai.004G202600' => 'gra', 'Gorai.007G090900' => 'gra', 'Gorai.007G376700' => 'gra', 'Gorai.008G114100' => 'gra', 'Gorai.011G237900' => 'gra', 'GSVIVG01005450001' => 'vvi', 'GSVIVG01016232001' => 'vvi', 'GSVIVG01026157001' => 'vvi', 'GSVIVG01027419001' => 'vvi', 'GSVIVG01027631001' => 'vvi', 'GSVIVG01034143001' => 'vvi', 'HanXRQChr03g0093921' => 'han', 'HanXRQChr04g0120001' => 'han', 'HanXRQChr04g0122561' => 'han', 'HanXRQChr09g0246851' => 'han', 'HanXRQChr10g0293311' => 'han', 'HanXRQChr13g0425231' => 'han', 'HanXRQChr16g0532571' => 'han', 'Haze_09050' => 'cav', 'Haze_15715' => 'cav', 'Haze_15716' => 'cav', 'Haze_16803' => 'cav', 'Haze_16850' => 'cav', 'Hma1.2p1_0301F.1_g118655' => 'hma', 'Hma1.2p1_0309F.1_g120590' => 'hma', 'Hma1.2p1_0936F.1_g238900' => 'hma', 'Hma1.2p1_3552F.1_g336740' => 'hma', 'HPP92_003520' => 'vpl', 'HPP92_006628' => 'vpl', 'HPP92_006645' => 'vpl', 'HPP92_014669' => 'vpl', 'HPP92_015077' => 'vpl', 'Hund16742' => 'sun', 'Hund17022' => 'sun', 'Lalb_Chr02g0152131' => 'lal', 'Lalb_Chr05g0225371' => 'lal', 'Lalb_Chr07g0189841' => 'lal', 'Lalb_Chr07g0192961' => 'lal', 'Lalb_Chr12g0208221' => 'lal', 'Lalb_Chr13g0291211' => 'lal', 'Lalb_Chr13g0291781' => 'lal', 'Lalb_Chr18g0044651' => 'lal', 'Lalb_Chr21g0313731' => 'lal', 'Lj1g0022533' => 'lja', 'Lj2A18T50' => 'lonja', 'Lj2A92G93' => 'lonja', 'Lj3A965T73' => 'lonja', 'Lj3g0000673' => 'lja', 'Lj3g0002666' => 'lja', 'Lj4g0016985' => 'lja', 'Lj5g0003625' => 'lja', 'Lj7A529G36' => 'lonja', 'Lj9A569T49' => 'lonja', 'Lj9A604T63' => 'lonja', 'Lsat_1_v5_gn_3_132060' => 'lsa', 'Lsat_1_v5_gn_4_68941' => 'lsa', 'Lsat_1_v5_gn_5_95580' => 'lsa', 'Lsat_1_v5_gn_7_161' => 'lsa', 'Lsat_1_v5_gn_7_7041' => 'lsa', 'Lsat_1_v5_gn_9_33481' => 'lsa', 'Lsat_1_v5_gn_9_68260' => 'lsa', 'Manes.01G073100' => 'mes', 'Manes.01G266300' => 'mes', 'Manes.02G033300' => 'mes', 'Manes.05G017900' => 'mes', 'Manes.05G046100' => 'mes', 'Manes.08G080900' => 'mes', 'Manes.10G049400' => 'mes', 'Mapoly0009s0186' => 'mpo', 'Mapoly0036s0118' => 'mpo', 'Mapoly0101s0046' => 'mpo', 'MBI04_g30218_MAGBIO' => 'mbi', 'MBI04_g35564_MAGBIO' => 'mbi', 'MBI12_g34011_MAGBIO' => 'mbi', 'MBI14_g04655_MAGBIO' => 'mbi', 'MCO07G653' => 'mco', 'MCO10G173' => 'mco', 'MD01G1087100' => 'mdo', 'MD01G1104200' => 'mdo', 'MD02G1205100' => 'mdo', 'MD04G1079200' => 'mdo', 'MD04G1131400' => 'mdo', 'MD07G1121600' => 'mdo', 'MD07G1157300' => 'mdo', 'MD07G1171000' => 'mdo', 'MD12G1144500' => 'mdo', 'Medtr1g094610' => 'mtr', 'Medtr4g021795' => 'mtr', 'Medtr4g023760' => 'mtr', 'Medtr7g118050' => 'mtr', 'MELO3C005582.2' => 'cme', 'MELO3C005989.2' => 'cme', 'MELO3C006192.2' => 'cme', 'MELO3C009248.2' => 'cme', 'MELO3C019817.2' => 'cme', 'Migut.B01625' => 'egut', 'Migut.B01915' => 'egut', 'Migut.F01721' => 'egut', 'Migut.J00314' => 'egut', 'MSTRG.20742' => 'ama', 'MSTRG.8134' => 'ama', 'Nitab4.5_0000096g0010' => 'nta', 'Nitab4.5_0000202g0030' => 'nta', 'Nitab4.5_0000216g0370' => 'nta', 'Nitab4.5_0000457g0230' => 'nta', 'Nitab4.5_0001702g0170' => 'nta', 'Nitab4.5_0003607g0010' => 'nta', 'Nitab4.5_0004917g0020' => 'nta', 'Nitab4.5_0007059g0010' => 'nta', 'Nitab4.5_0007184g0010' => 'nta', 'Nitab4.5_0007346g0020' => 'nta', 'Nn1g00410' => 'nnu', 'Nn1g01252' => 'nnu', 'Nn2g11168' => 'nnu', 'Nn2g13403' => 'nnu', 'Nn2g13760' => 'nnu', 'Nn4g26380' => 'nnu', 'Oeu000806.2' => 'oeu', 'Oeu005788.1' => 'oeu', 'Oeu006900.3' => 'oeu', 'Oeu007797.1' => 'oeu', 'Oeu011932.1' => 'oeu', 'Oeu022739.1' => 'oeu', 'Oeu037918.1' => 'oeu', 'Oeu055490.2' => 'oeu', 'Os01g0844400' => 'osa', 'Os02g0819100' => 'osa', 'Os03g0804300' => 'osa', 'Os05g0458000' => 'osa', 'Os07g0467800' => 'osa', 'Os12g0602200' => 'osa', 'Peaxi162Scf00013g03444' => 'pax', 'Peaxi162Scf00094g01120' => 'pax', 'Peaxi162Scf00191g01211' => 'pax', 'Peaxi162Scf00238g01110' => 'pax', 'Peaxi162Scf00330g00719' => 'pax', 'Peaxi162Scf00627g00018' => 'pax', 'PGR031G2686' => 'pgr', 'PGR042G0809' => 'pgr', 'PGR142G0193' => 'pgr', 'PGSC0003DMG400011066' => 'stu', 'PGSC0003DMG400012041' => 'stu', 'PGSC0003DMG400013678' => 'stu', 'PGSC0003DMG400023477' => 'stu', 'PGSC0003DMG400025956' => 'stu', 'PGSC0003DMG401019151' => 'stu', 'Phvul.006G116400' => 'pvu', 'Phvul.007G097300' => 'pvu', 'Phvul.010G015000' => 'pvu', 'Phvul.010G083900' => 'pvu', 'Potri.001G117100' => 'ptr', 'Potri.002G147300' => 'ptr', 'Potri.003G115600' => 'ptr', 'Potri.006G087400' => 'ptr', 'Potri.010G226100' => 'ptr', 'Potri.014G069200' => 'ptr', 'Potri.014G104000' => 'ptr', 'Potri.016G100200' => 'ptr', 'Pp3c10_20450' => 'ppa', 'Pp3c1_42400' => 'ppa', 'Pp3c3_24390' => 'ppa', 'Pp3c3_2860' => 'ppa', 'PRCOL_00003193' => 'pco', 'Prupe.2G144500' => 'ppe', 'Prupe.2G195700' => 'ppe', 'Prupe.2G209800' => 'ppe', 'Prupe.5G080000' => 'ppe', 'Prupe.6G257900' => 'ppe', 'Psat3g001160' => 'psa', 'Psat6g181880' => 'psa', 'Psat7g233720' => 'psa', 'PSO063G7587' => 'pso', 'PSO339G2145' => 'pso', 'PSO339G3369' => 'pso', 'PSO478G2747' => 'pso', 'PSO513G0140' => 'pso', 'PSO782G1614' => 'pso', 'PSO782G4889' => 'pso', 'PSO782G5485' => 'pso', 'PSO801G0241' => 'pso', 'QL07p048854' => 'qlo', 'QL08p046745' => 'qlo', 'QL08p052606' => 'qlo', 'QL08p053414' => 'qlo', 'QL08p054868' => 'qlo', 'RcHm_v2.0_Chr1g0350251' => 'rch', 'RcHm_v2.0_Chr1g0360851' => 'rch', 'RcHm_v2.0_Chr1g0362791' => 'rch', 'RcHm_v2.0_Chr3g0466281' => 'rch', 'RcHm_v2.0_Chr7g0201481' => 'rch', 'Rhsim01G0148600' => 'rsi', 'Rhsim05G0194400' => 'rsi', 'Rhsim07G0000700' => 'rsi', 'Rhsim07G0000800' => 'rsi', 'Rhsim07G0027900' => 'rsi', 'Rhsim09G0149500' => 'rsi', 'RhsimUnG0186900' => 'rsi', 'Sabra01G0089900' => 'sbr', 'Sabra02G0114700' => 'sbr', 'Sabra02G0116300' => 'sbr', 'Sabra03G0080100' => 'sbr', 'Sabra08G0024300' => 'sbr', 'Sabra10G0174300' => 'sbr', 'Sabra14G0048900' => 'sbr', 'Sabra14G0076500' => 'sbr', 'SalBow5G2513' => 'sbo', 'Sc01g0002300' => 'sci', 'Sc01g0004450' => 'sci', 'Sc06g0001680' => 'sci', 'Sc23g0003580' => 'sci', 'Sed0000913' => 'sed', 'Sed0001655' => 'sed', 'Sed0007745' => 'sed', 'Sed0010951' => 'sed', 'Sed0017599' => 'sed', 'Sed0021405' => 'sed', 'Sed0022810' => 'sed', 'SEGI_07099' => 'sgi', 'SEGI_11931' => 'sgi', 'SEGI_13187' => 'sgi', 'SEGI_29958' => 'sgi', 'SEGI_36351' => 'sgi', 'SGA_v2.0_scaffold126G33770' => 'sas', 'SGA_v2.0_scaffold153G37003' => 'sas', 'SGA_v2.0_scaffold2G01359' => 'sas', 'SGA_v2.0_scaffold5G03064' => 'sas', 'SGA_v2.0_scaffold95G28903' => 'sas', 'SHI12701' => 'shi', 'SHI26410' => 'shi', 'SHI38997' => 'shi', 'SHI53759' => 'shi', 'SHI53886' => 'shi', 'SHI54714' => 'shi', 'SMO011G0041' => 'smo', 'SMO146G0251' => 'smo', 'SMO160G0004' => 'smo', 'SMO174G0057' => 'smo', 'SMO244G0089' => 'smo', 'SMO296G0011' => 'smo', 'Solyc01g091280.3' => 'sly', 'Solyc05g047610.3' => 'sly', 'Solyc05g047640.3' => 'sly', 'Solyc05g055630.3' => 'sly', 'Solyc10g018160.2' => 'sly', 'Solyc10g084820.2' => 'sly', 'Solyc10g086565.2' => 'sly', 'Sopen01g037030' => 'spe', 'Sopen05g027920' => 'spe', 'Sopen05g034070' => 'spe', 'Sopen10g007260' => 'spe', 'Sopen10g034260' => 'spe', 'Sopen10g035950' => 'spe', 'Sp3g07710' => 'spa', 'Sp4g27420' => 'spa', 'Sp5g02450' => 'spa', 'Sp6g01280' => 'spa', 'Sp6g38480' => 'spa', 'Sp7g20780' => 'spa', 'TAR374G1413' => 'tar', 'TAR623G1777' => 'tar', 'TAR629G2370' => 'tar', 'TAR633G1759' => 'tar', 'TAR636G3387' => 'tar', 'THA.LOC104802447' => 'tha', 'THA.LOC104813916' => 'tha', 'THA.LOC104816423' => 'tha', 'THA.LOC104817246' => 'tha', 'THA.LOC104825895' => 'tha', 'Thecc.01G335200' => 'tca', 'Thecc.01G377400' => 'tca', 'Thecc.03G262200' => 'tca', 'Thecc.05G036800' => 'tca', 'Thecc.10G080500' => 'tca', 'Thecc.10G080800' => 'tca', 'Thhalv10001560m.g' => 'esa', 'Thhalv10006120m.g' => 'esa', 'Thhalv10014375m.g' => 'esa', 'Thhalv10021264m.g' => 'esa', 'Thhalv10028856m.g' => 'esa', 'TPR.G1914' => 'tpr', 'TPR.G4757' => 'tpr', 'TPR.G5595' => 'tpr', 'TWI14G0952' => 'twi', 'TWI14G1307' => 'twi', 'TWI38G2143' => 'twi', 'TWI59G0826' => 'twi', 'TWI77G0527' => 'twi', 'TWI81G0150' => 'twi', 'unitig_21.g21018' => 'ugi', 'unitig_26.g9725' => 'ugi', 'unitig_744.g24653' => 'ugi', 'unitig_749.g13778' => 'ugi', 'unitig_899.g15035' => 'ugi', 'vmacro04296' => 'vma', 'vmacro04852' => 'vma', 'vmacro13404' => 'vma', 'vmacro20169' => 'vma', 'vmacro21014' => 'vma', 'VMungo0331G0237' => 'vmu', 'VMungo0331G0706' => 'vmu', 'VMungo0331G1361' => 'vmu', 'VMungo0331G1489' => 'vmu', 'VMungo0540G1037' => 'vmu', 'VMungo0720G2487' => 'vmu', 'VMungo0720G2721' => 'vmu', 'Zm00001eb086860' => 'zma', 'Zm00001eb104760' => 'zma', 'Zm00001eb148220' => 'zma', 'Zm00001eb259030' => 'zma', 'Zm00001eb289590' => 'zma', 'Zm00001eb420150' => 'zma' ) $gf_id = 'HOM05D000968' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000968' ) $data_identifier = 'HOM05D000968' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 19, 'bol' => (int) 9, 'bra' => (int) 12, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 5, 'ccan' => (int) 7, 'cde' => (int) 5, 'cfa' => (int) 8, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 4, 'dca' => (int) 5, 'din' => (int) 5, 'dzi' => (int) 12, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 25, 'fve' => (int) 5, 'gma' => (int) 9, 'ghi' => (int) 18, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 7, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 5, 'sun' => (int) 2, 'lal' => (int) 9, 'lja' => (int) 5, 'lonja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 9, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 2, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 3, 'stu' => (int) 6, 'pvu' => (int) 4, 'ptr' => (int) 8, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 3, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 1, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 5, 'sas' => (int) 5, 'shi' => (int) 6, 'smo' => (int) 6, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 3, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420150' $species_info = array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ) $local_species = 'rch' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000968', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p31690' => 'bna', 'A03p36040' => 'bna', 'A03p53730' => 'bna', 'A04p01410' => 'bna', 'A05p05420' => 'bna', 'A05p39630' => 'bna', 'A05p39640' => 'bna', 'A09p00970' => 'bna', 'A09p53060' => 'bna', 'A10p31890' => 'bna', 'Aa31LG10G15040' => 'aar', 'Aa31LG1G21090' => 'aar', 'Aa31LG1G26900' => 'aar', 'Aa31LG3G1820' => 'aar', 'Aa31LG5G1100' => 'aar', 'Aa31LG6G4740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2265' => 'aag', 'Actinidia07998' => 'ach', 'Actinidia11266' => 'ach', 'Actinidia12682' => 'ach', 'Actinidia26479' => 'ach', 'Actinidia31406' => 'ach', 'Actinidia32437' => 'ach', 'Actinidia38862' => 'ach', 'Ah.05g174230' => 'amhyb', 'Ah.05g179070' => 'amhyb', 'Ah.05g179090' => 'amhyb', 'Ah.12g059950' => 'amhyb', 'AL3G20480' => 'aly', 'AL4G44520' => 'aly', 'AL5G43110' => 'aly', 'AL6G13890' => 'aly', 'AL6G52620' => 'aly', 'AL7G30830' => 'aly', 'Aqoxy1G00899' => 'aox', 'Aqoxy5G04333' => 'aox', 'Aqoxy7G00641' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3IZ0NN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4EF6AW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W9P8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79GA3M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C43NQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFCU6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G95YVJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCHK29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LU1UG8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX91RN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGB4B1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8DA0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9H7JI' => 'arhy', 'AT3G09320' => 'ath', 'AT3G60800' => 'ath', 'AT4G00840' => 'ath', 'AT4G22750' => 'ath', 'AT5G04270' => 'ath', 'ATR0090G003' => 'atr', 'ATR0559G349' => 'atr', 'ATR0680G261' => 'atr', 'ATR0810G048' => 'atr', 'Atru.chr12.831' => 'acertr', 'Atru.chr5.303' => 'acertr', 'Atru.chr5.748' => 'acertr', 'Atru.chr8.1999' => 'acertr', 'Atru.chr9.1436' => 'acertr', 'AUR62004211' => 'cqu', 'AUR62004548' => 'cqu', 'AUR62013637' => 'cqu', 'AUR62022662' => 'cqu', 'AUR62025777' => 'cqu', 'AUR62042386' => 'cqu', 'BcaB01g02310' => 'bca', 'BcaB01g06062' => 'bca', 'BcaB02g08975' => 'bca', 'BcaB02g08980' => 'bca', 'BcaC01g04228' => 'bca', 'BcaC01g06830' => 'bca', 'BcaC02g10186' => 'bca', 'BcaC02g12214' => 'bca', 'BcaC04g24101' => 'bca', 'BcaC05g29520' => 'bca', 'BcaC05g29661' => 'bca', 'BcaC06g32130' => 'bca', 'BcaC06g32131' => 'bca', 'BcaC07g40601' => 'bca', 'BcaC07g42641' => 'bca', 'BcaNung01038' => 'bca', 'BcaNung01676' => 'bca', 'BcaNung02480' => 'bca', 'BcaNung07376' => 'bca', 'BolC3t16146H' => 'bol', 'BolC3t16637H' => 'bol', 'BolC4t22257H' => 'bol', 'BolC4t24728H' => 'bol', 'BolC5t34517H' => 'bol', 'BolC7t45703H' => 'bol', 'BolC8t51166H' => 'bol', 'BolC9t53038H' => 'bol', 'BolC9t60000H' => 'bol', 'BraA01t01345Z' => 'bra', 'BraA01t01346Z' => 'bra', 'BraA01t01348Z' => 'bra', 'BraA03t12347Z' => 'bra', 'BraA03t12775Z' => 'bra', 'BraA03t14439Z' => 'bra', 'BraA04t15860Z' => 'bra', 'BraA05t19511Z' => 'bra', 'BraA05t22746Z' => 'bra', 'BraA09t35767Z' => 'bra', 'BraA09t40732Z' => 'bra', 'BraA10t45233Z' => 'bra', 'C03p38720' => 'bna', 'C03p43680' => 'bna', 'C04p06350' => 'bna', 'C04p31800' => 'bna', 'C05p58680' => 'bna', 'C07p52110' => 'bna', 'C08p35760' => 'bna', 'C09p01050' => 'bna', 'C09p72600' => 'bna', 'CAN.G106.2' => 'can', 'CAN.G1482.1' => 'can', 'CAN.G324.12' => 'can', 'CAN.G388.20' => 'can', 'CAN.G412.7' => 'can', 'CAN.G694.32' => 'can', 'CAN.G92.12' => 'can', 'CANSAT11G2353' => 'cansat', 'CANSAT21G1398' => 'cansat', 'CANSAT56G2456' => 'cansat', 'CANSAT56G3031' => 'cansat', 'CANSAT56G4539' => 'cansat', 'CARHR083680' => 'chi', 'CARHR171190' => 'chi', 'CARHR209010' => 'chi', 'CARHR229680' => 'chi', 'CARHR249490' => 'chi', 'Carub.0003s0844' => 'cru', 'Carub.0005s2755' => 'cru', 'Carub.0006s0322' => 'cru', 'Carub.0006s3586' => 'cru', 'Carub.0007s1855' => 'cru', 'Ca_07808_v3' => 'car', 'Ca_09535_v3' => 'car', 'Ca_10548_v3' => 'car', 'Ca_19913_v3' => 'car', 'Ca_19916_v3' => 'car', 'Ca_19975_v3' => 'car', 'CBR_g22876' => 'cbr', 'CBR_g22879' => 'cbr', 'CBR_g38491' => 'cbr', 'CBR_g54185' => 'cbr', 'CBR_g54190' => 'cbr', 'Cc02_g11020' => 'ccan', 'Cc02_g23920' => 'ccan', 'Cc02_g39860' => 'ccan', 'Cc02_g39870' => 'ccan', 'Cc03_g06760' => 'ccan', 'Cc06_g02450' => 'ccan', 'Cc09_g09450' => 'ccan', 'CDE02G1959' => 'cde', 'CDE04G0600' => 'cde', 'CDE07G1996' => 'cde', 'CDE07G2078' => 'cde', 'CDE11G0611' => 'cde', 'Cfa001683' => 'cfa', 'Cfa001734' => 'cfa', 'Cfa001737' => 'cfa', 'Cfa003751' => 'cfa', 'Cfa012019' => 'cfa', 'Cfa017353' => 'cfa', 'Cfa017732' => 'cfa', 'Cfa022464' => 'cfa', 'Ciclev10012400m.g' => 'ccl', 'Ciclev10021242m.g' => 'ccl', 'Ciclev10021302m.g' => 'ccl', 'Ciclev10021463m.g' => 'ccl', 'Ciclev10032359m.g' => 'ccl', 'CiPaw.01G081000' => 'cil', 'CiPaw.01G262500' => 'cil', 'CiPaw.01G269800' => 'cil', 'CiPaw.02G168400' => 'cil', 'CiPaw.05G119500' => 'cil', 'CiPaw.11G147300' => 'cil', 'ClCG01G003630' => 'cla', 'ClCG05G000510' => 'cla', 'ClCG05G002300' => 'cla', 'ClCG08G007650' => 'cla', 'ClCG10G021250' => 'cla', 'COL.COLO4_06218' => 'col', 'COL.COLO4_12538' => 'col', 'COL.COLO4_14775' => 'col', 'COL.COLO4_23875' => 'col', 'Cpa.g.sc141.16' => 'cpa', 'Cpa.g.sc169.16' => 'cpa', 'Cpa.g.sc244.4' => 'cpa', 'Cpa.g.sc244.5' => 'cpa', 'Cpa.g.sc29.87' => 'cpa', 'Cpa.g.sc53.115' => 'cpa', 'Cre03.g207502' => 'cre', 'Cre06.g277000' => 'cre', 'Cre09.g394050' => 'cre', 'CsaV3_3G007680' => 'csa', 'CsaV3_3G009710' => 'csa', 'CsaV3_3G034790' => 'csa', 'CsaV3_5G003750' => 'csa', 'CsaV3_6G036620' => 'csa', 'CSS0002288' => 'camsi', 'CSS0011250' => 'camsi', 'CSS0021619' => 'camsi', 'CSS0046701' => 'camsi', 'DCAR_006420' => 'dca', 'DCAR_006865' => 'dca', 'DCAR_008558' => 'dca', 'DCAR_028754' => 'dca', 'DCAR_028755' => 'dca', 'Dinv31218' => 'din', 'Dinv32371' => 'din', 'Dinv34250' => 'din', 'Dinv37156' => 'din', 'Dinv43704' => 'din', 'Duzib093G1811' => 'dzi', 'Duzib106G1622' => 'dzi', 'Duzib114G0504' => 'dzi', 'Duzib128G0338' => 'dzi', 'Duzib128G1577' => 'dzi', 'Duzib133G0104' => 'dzi', 'Duzib133G1080' => 'dzi', 'Duzib138G0324' => 'dzi', 'Duzib138G0394' => 'dzi', 'Duzib205G0122' => 'dzi', 'Duzib268G1020' => 'dzi', 'Duzib268G1359' => 'dzi', 'ECA232G3929' => 'eca', 'ECA236G2210' => 'eca', 'ECA236G2287' => 'eca', 'ECA240G4568' => 'eca', 'ECA247G0894' => 'eca', 'EL10Ac1g00200' => 'bvu', 'EL10Ac1g00886' => 'bvu', 'EL10As1g23091' => 'bvu', 'EL10As1g23092' => 'bvu', 'Eucgr.A01284' => 'egr', 'Eucgr.A01285' => 'egr', 'Eucgr.D02456' => 'egr', 'Eucgr.E00018' => 'egr', 'Eucgr.E01439' => 'egr', 'Eucgr.G02859' => 'egr', 'FAN01G0168' => 'fan', 'FAN01G0453' => 'fan', 'FAN01G2761' => 'fan', 'FAN02G1239' => 'fan', 'FAN03G0645' => 'fan', 'FAN03G2707' => 'fan', 'FAN03G2978' => 'fan', 'FAN04G0227' => 'fan', 'FAN06G0091' => 'fan', 'FAN06G1418' => 'fan', 'FAN06G1512' => 'fan', 'FAN06G1986' => 'fan', 'FAN06G2905' => 'fan', 'FAN06G4325' => 'fan', 'FAN08G0033' => 'fan', 'FAN09G0642' => 'fan', 'FAN10G1763' => 'fan', 'FAN10G2026' => 'fan', 'FAN10G2513' => 'fan', 'FAN10G3402' => 'fan', 'FAN10G3564' => 'fan', 'FAN10G3987' => 'fan', 'FAN13G1490' => 'fan', 'FAN14G5857' => 'fan', 'FAN18G1188' => 'fan', 'FvH4_5g00750' => 'fve', 'FvH4_6g13410' => 'fve', 'FvH4_7g11740' => 'fve', 'FvH4_7g17410' => 'fve', 'FvH4_7g18860' => 'fve', 'Glyma.01G099100' => 'gma', 'Glyma.01G142300' => 'gma', 'Glyma.03G025500' => 'gma', 'Glyma.03G069700' => 'gma', 'Glyma.03G260000' => 'gma', 'Glyma.09G269800' => 'gma', 'Glyma.10G208700' => 'gma', 'Glyma.18G220400' => 'gma', 'Glyma.20G182000' => 'gma', 'Gohir.A01G221726' => 'ghi', 'Gohir.A07G134600' => 'ghi', 'Gohir.A07G146000' => 'ghi', 'Gohir.A08G173900' => 'ghi', 'Gohir.A09G194900' => 'ghi', 'Gohir.A10G204100' => 'ghi', 'Gohir.A11G080600' => 'ghi', 'Gohir.A11G327500' => 'ghi', 'Gohir.A12G101800' => 'ghi', 'Gohir.D01G211200' => 'ghi', 'Gohir.D07G139200' => 'ghi', 'Gohir.D07G152100' => 'ghi', 'Gohir.D08G192600' => 'ghi', 'Gohir.D09G189200' => 'ghi', 'Gohir.D10G212000' => 'ghi', 'Gohir.D11G085200' => 'ghi', 'Gohir.D11G346400' => 'ghi', 'Gohir.D12G104800' => 'ghi', 'Gorai.001G151300' => 'gra', 'Gorai.001G174100' => 'gra', 'Gorai.002G257000' => 'gra', 'Gorai.004G202600' => 'gra', 'Gorai.007G090900' => 'gra', 'Gorai.007G376700' => 'gra', 'Gorai.008G114100' => 'gra', 'Gorai.011G237900' => 'gra', 'GSVIVG01005450001' => 'vvi', 'GSVIVG01016232001' => 'vvi', 'GSVIVG01026157001' => 'vvi', 'GSVIVG01027419001' => 'vvi', 'GSVIVG01027631001' => 'vvi', 'GSVIVG01034143001' => 'vvi', 'HanXRQChr03g0093921' => 'han', 'HanXRQChr04g0120001' => 'han', 'HanXRQChr04g0122561' => 'han', 'HanXRQChr09g0246851' => 'han', 'HanXRQChr10g0293311' => 'han', 'HanXRQChr13g0425231' => 'han', 'HanXRQChr16g0532571' => 'han', 'Haze_09050' => 'cav', 'Haze_15715' => 'cav', 'Haze_15716' => 'cav', 'Haze_16803' => 'cav', 'Haze_16850' => 'cav', 'Hma1.2p1_0301F.1_g118655' => 'hma', 'Hma1.2p1_0309F.1_g120590' => 'hma', 'Hma1.2p1_0936F.1_g238900' => 'hma', 'Hma1.2p1_3552F.1_g336740' => 'hma', 'HPP92_003520' => 'vpl', 'HPP92_006628' => 'vpl', 'HPP92_006645' => 'vpl', 'HPP92_014669' => 'vpl', 'HPP92_015077' => 'vpl', 'Hund16742' => 'sun', 'Hund17022' => 'sun', 'Lalb_Chr02g0152131' => 'lal', 'Lalb_Chr05g0225371' => 'lal', 'Lalb_Chr07g0189841' => 'lal', 'Lalb_Chr07g0192961' => 'lal', 'Lalb_Chr12g0208221' => 'lal', 'Lalb_Chr13g0291211' => 'lal', 'Lalb_Chr13g0291781' => 'lal', 'Lalb_Chr18g0044651' => 'lal', 'Lalb_Chr21g0313731' => 'lal', 'Lj1g0022533' => 'lja', 'Lj2A18T50' => 'lonja', 'Lj2A92G93' => 'lonja', 'Lj3A965T73' => 'lonja', 'Lj3g0000673' => 'lja', 'Lj3g0002666' => 'lja', 'Lj4g0016985' => 'lja', 'Lj5g0003625' => 'lja', 'Lj7A529G36' => 'lonja', 'Lj9A569T49' => 'lonja', 'Lj9A604T63' => 'lonja', 'Lsat_1_v5_gn_3_132060' => 'lsa', 'Lsat_1_v5_gn_4_68941' => 'lsa', 'Lsat_1_v5_gn_5_95580' => 'lsa', 'Lsat_1_v5_gn_7_161' => 'lsa', 'Lsat_1_v5_gn_7_7041' => 'lsa', 'Lsat_1_v5_gn_9_33481' => 'lsa', 'Lsat_1_v5_gn_9_68260' => 'lsa', 'Manes.01G073100' => 'mes', 'Manes.01G266300' => 'mes', 'Manes.02G033300' => 'mes', 'Manes.05G017900' => 'mes', 'Manes.05G046100' => 'mes', 'Manes.08G080900' => 'mes', 'Manes.10G049400' => 'mes', 'Mapoly0009s0186' => 'mpo', 'Mapoly0036s0118' => 'mpo', 'Mapoly0101s0046' => 'mpo', 'MBI04_g30218_MAGBIO' => 'mbi', 'MBI04_g35564_MAGBIO' => 'mbi', 'MBI12_g34011_MAGBIO' => 'mbi', 'MBI14_g04655_MAGBIO' => 'mbi', 'MCO07G653' => 'mco', 'MCO10G173' => 'mco', 'MD01G1087100' => 'mdo', 'MD01G1104200' => 'mdo', 'MD02G1205100' => 'mdo', 'MD04G1079200' => 'mdo', 'MD04G1131400' => 'mdo', 'MD07G1121600' => 'mdo', 'MD07G1157300' => 'mdo', 'MD07G1171000' => 'mdo', 'MD12G1144500' => 'mdo', 'Medtr1g094610' => 'mtr', 'Medtr4g021795' => 'mtr', 'Medtr4g023760' => 'mtr', 'Medtr7g118050' => 'mtr', 'MELO3C005582.2' => 'cme', 'MELO3C005989.2' => 'cme', 'MELO3C006192.2' => 'cme', 'MELO3C009248.2' => 'cme', 'MELO3C019817.2' => 'cme', 'Migut.B01625' => 'egut', 'Migut.B01915' => 'egut', 'Migut.F01721' => 'egut', 'Migut.J00314' => 'egut', 'MSTRG.20742' => 'ama', 'MSTRG.8134' => 'ama', 'Nitab4.5_0000096g0010' => 'nta', 'Nitab4.5_0000202g0030' => 'nta', 'Nitab4.5_0000216g0370' => 'nta', 'Nitab4.5_0000457g0230' => 'nta', 'Nitab4.5_0001702g0170' => 'nta', 'Nitab4.5_0003607g0010' => 'nta', 'Nitab4.5_0004917g0020' => 'nta', 'Nitab4.5_0007059g0010' => 'nta', 'Nitab4.5_0007184g0010' => 'nta', 'Nitab4.5_0007346g0020' => 'nta', 'Nn1g00410' => 'nnu', 'Nn1g01252' => 'nnu', 'Nn2g11168' => 'nnu', 'Nn2g13403' => 'nnu', 'Nn2g13760' => 'nnu', 'Nn4g26380' => 'nnu', 'Oeu000806.2' => 'oeu', 'Oeu005788.1' => 'oeu', 'Oeu006900.3' => 'oeu', 'Oeu007797.1' => 'oeu', 'Oeu011932.1' => 'oeu', 'Oeu022739.1' => 'oeu', 'Oeu037918.1' => 'oeu', 'Oeu055490.2' => 'oeu', 'Os01g0844400' => 'osa', 'Os02g0819100' => 'osa', 'Os03g0804300' => 'osa', 'Os05g0458000' => 'osa', 'Os07g0467800' => 'osa', 'Os12g0602200' => 'osa', 'Peaxi162Scf00013g03444' => 'pax', 'Peaxi162Scf00094g01120' => 'pax', 'Peaxi162Scf00191g01211' => 'pax', 'Peaxi162Scf00238g01110' => 'pax', 'Peaxi162Scf00330g00719' => 'pax', 'Peaxi162Scf00627g00018' => 'pax', 'PGR031G2686' => 'pgr', 'PGR042G0809' => 'pgr', 'PGR142G0193' => 'pgr', 'PGSC0003DMG400011066' => 'stu', 'PGSC0003DMG400012041' => 'stu', 'PGSC0003DMG400013678' => 'stu', 'PGSC0003DMG400023477' => 'stu', 'PGSC0003DMG400025956' => 'stu', 'PGSC0003DMG401019151' => 'stu', 'Phvul.006G116400' => 'pvu', 'Phvul.007G097300' => 'pvu', 'Phvul.010G015000' => 'pvu', 'Phvul.010G083900' => 'pvu', 'Potri.001G117100' => 'ptr', 'Potri.002G147300' => 'ptr', 'Potri.003G115600' => 'ptr', 'Potri.006G087400' => 'ptr', 'Potri.010G226100' => 'ptr', 'Potri.014G069200' => 'ptr', 'Potri.014G104000' => 'ptr', 'Potri.016G100200' => 'ptr', 'Pp3c10_20450' => 'ppa', 'Pp3c1_42400' => 'ppa', 'Pp3c3_24390' => 'ppa', 'Pp3c3_2860' => 'ppa', 'PRCOL_00003193' => 'pco', 'Prupe.2G144500' => 'ppe', 'Prupe.2G195700' => 'ppe', 'Prupe.2G209800' => 'ppe', 'Prupe.5G080000' => 'ppe', 'Prupe.6G257900' => 'ppe', 'Psat3g001160' => 'psa', 'Psat6g181880' => 'psa', 'Psat7g233720' => 'psa', 'PSO063G7587' => 'pso', 'PSO339G2145' => 'pso', 'PSO339G3369' => 'pso', 'PSO478G2747' => 'pso', 'PSO513G0140' => 'pso', 'PSO782G1614' => 'pso', 'PSO782G4889' => 'pso', 'PSO782G5485' => 'pso', 'PSO801G0241' => 'pso', 'QL07p048854' => 'qlo', 'QL08p046745' => 'qlo', 'QL08p052606' => 'qlo', 'QL08p053414' => 'qlo', 'QL08p054868' => 'qlo', 'RcHm_v2.0_Chr1g0350251' => 'rch', 'RcHm_v2.0_Chr1g0360851' => 'rch', 'RcHm_v2.0_Chr1g0362791' => 'rch', 'RcHm_v2.0_Chr3g0466281' => 'rch', 'RcHm_v2.0_Chr7g0201481' => 'rch', 'Rhsim01G0148600' => 'rsi', 'Rhsim05G0194400' => 'rsi', 'Rhsim07G0000700' => 'rsi', 'Rhsim07G0000800' => 'rsi', 'Rhsim07G0027900' => 'rsi', 'Rhsim09G0149500' => 'rsi', 'RhsimUnG0186900' => 'rsi', 'Sabra01G0089900' => 'sbr', 'Sabra02G0114700' => 'sbr', 'Sabra02G0116300' => 'sbr', 'Sabra03G0080100' => 'sbr', 'Sabra08G0024300' => 'sbr', 'Sabra10G0174300' => 'sbr', 'Sabra14G0048900' => 'sbr', 'Sabra14G0076500' => 'sbr', 'SalBow5G2513' => 'sbo', 'Sc01g0002300' => 'sci', 'Sc01g0004450' => 'sci', 'Sc06g0001680' => 'sci', 'Sc23g0003580' => 'sci', 'Sed0000913' => 'sed', 'Sed0001655' => 'sed', 'Sed0007745' => 'sed', 'Sed0010951' => 'sed', 'Sed0017599' => 'sed', 'Sed0021405' => 'sed', 'Sed0022810' => 'sed', 'SEGI_07099' => 'sgi', 'SEGI_11931' => 'sgi', 'SEGI_13187' => 'sgi', 'SEGI_29958' => 'sgi', 'SEGI_36351' => 'sgi', 'SGA_v2.0_scaffold126G33770' => 'sas', 'SGA_v2.0_scaffold153G37003' => 'sas', 'SGA_v2.0_scaffold2G01359' => 'sas', 'SGA_v2.0_scaffold5G03064' => 'sas', 'SGA_v2.0_scaffold95G28903' => 'sas', 'SHI12701' => 'shi', 'SHI26410' => 'shi', 'SHI38997' => 'shi', 'SHI53759' => 'shi', 'SHI53886' => 'shi', 'SHI54714' => 'shi', 'SMO011G0041' => 'smo', 'SMO146G0251' => 'smo', 'SMO160G0004' => 'smo', 'SMO174G0057' => 'smo', 'SMO244G0089' => 'smo', 'SMO296G0011' => 'smo', 'Solyc01g091280.3' => 'sly', 'Solyc05g047610.3' => 'sly', 'Solyc05g047640.3' => 'sly', 'Solyc05g055630.3' => 'sly', 'Solyc10g018160.2' => 'sly', 'Solyc10g084820.2' => 'sly', 'Solyc10g086565.2' => 'sly', 'Sopen01g037030' => 'spe', 'Sopen05g027920' => 'spe', 'Sopen05g034070' => 'spe', 'Sopen10g007260' => 'spe', 'Sopen10g034260' => 'spe', 'Sopen10g035950' => 'spe', 'Sp3g07710' => 'spa', 'Sp4g27420' => 'spa', 'Sp5g02450' => 'spa', 'Sp6g01280' => 'spa', 'Sp6g38480' => 'spa', 'Sp7g20780' => 'spa', 'TAR374G1413' => 'tar', 'TAR623G1777' => 'tar', 'TAR629G2370' => 'tar', 'TAR633G1759' => 'tar', 'TAR636G3387' => 'tar', 'THA.LOC104802447' => 'tha', 'THA.LOC104813916' => 'tha', 'THA.LOC104816423' => 'tha', 'THA.LOC104817246' => 'tha', 'THA.LOC104825895' => 'tha', 'Thecc.01G335200' => 'tca', 'Thecc.01G377400' => 'tca', 'Thecc.03G262200' => 'tca', 'Thecc.05G036800' => 'tca', 'Thecc.10G080500' => 'tca', 'Thecc.10G080800' => 'tca', 'Thhalv10001560m.g' => 'esa', 'Thhalv10006120m.g' => 'esa', 'Thhalv10014375m.g' => 'esa', 'Thhalv10021264m.g' => 'esa', 'Thhalv10028856m.g' => 'esa', 'TPR.G1914' => 'tpr', 'TPR.G4757' => 'tpr', 'TPR.G5595' => 'tpr', 'TWI14G0952' => 'twi', 'TWI14G1307' => 'twi', 'TWI38G2143' => 'twi', 'TWI59G0826' => 'twi', 'TWI77G0527' => 'twi', 'TWI81G0150' => 'twi', 'unitig_21.g21018' => 'ugi', 'unitig_26.g9725' => 'ugi', 'unitig_744.g24653' => 'ugi', 'unitig_749.g13778' => 'ugi', 'unitig_899.g15035' => 'ugi', 'vmacro04296' => 'vma', 'vmacro04852' => 'vma', 'vmacro13404' => 'vma', 'vmacro20169' => 'vma', 'vmacro21014' => 'vma', 'VMungo0331G0237' => 'vmu', 'VMungo0331G0706' => 'vmu', 'VMungo0331G1361' => 'vmu', 'VMungo0331G1489' => 'vmu', 'VMungo0540G1037' => 'vmu', 'VMungo0720G2487' => 'vmu', 'VMungo0720G2721' => 'vmu', 'Zm00001eb086860' => 'zma', 'Zm00001eb104760' => 'zma', 'Zm00001eb148220' => 'zma', 'Zm00001eb259030' => 'zma', 'Zm00001eb289590' => 'zma', 'Zm00001eb420150' => 'zma' ), 'gf_id' => 'HOM05D000968', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000968' ), 'data_identifier' => 'HOM05D000968', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000968', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p31690' => 'bna', 'A03p36040' => 'bna', 'A03p53730' => 'bna', 'A04p01410' => 'bna', 'A05p05420' => 'bna', 'A05p39630' => 'bna', 'A05p39640' => 'bna', 'A09p00970' => 'bna', 'A09p53060' => 'bna', 'A10p31890' => 'bna', 'Aa31LG10G15040' => 'aar', 'Aa31LG1G21090' => 'aar', 'Aa31LG1G26900' => 'aar', 'Aa31LG3G1820' => 'aar', 'Aa31LG5G1100' => 'aar', 'Aa31LG6G4740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2265' => 'aag', 'Actinidia07998' => 'ach', 'Actinidia11266' => 'ach', 'Actinidia12682' => 'ach', 'Actinidia26479' => 'ach', 'Actinidia31406' => 'ach', 'Actinidia32437' => 'ach', 'Actinidia38862' => 'ach', 'Ah.05g174230' => 'amhyb', 'Ah.05g179070' => 'amhyb', 'Ah.05g179090' => 'amhyb', 'Ah.12g059950' => 'amhyb', 'AL3G20480' => 'aly', 'AL4G44520' => 'aly', 'AL5G43110' => 'aly', 'AL6G13890' => 'aly', 'AL6G52620' => 'aly', 'AL7G30830' => 'aly', 'Aqoxy1G00899' => 'aox', 'Aqoxy5G04333' => 'aox', 'Aqoxy7G00641' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3IZ0NN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4EF6AW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W9P8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79GA3M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C43NQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFCU6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G95YVJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCHK29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LU1UG8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX91RN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGB4B1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8DA0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9H7JI' => 'arhy', 'AT3G09320' => 'ath', 'AT3G60800' => 'ath', 'AT4G00840' => 'ath', 'AT4G22750' => 'ath', 'AT5G04270' => 'ath', 'ATR0090G003' => 'atr', 'ATR0559G349' => 'atr', 'ATR0680G261' => 'atr', 'ATR0810G048' => 'atr', 'Atru.chr12.831' => 'acertr', 'Atru.chr5.303' => 'acertr', 'Atru.chr5.748' => 'acertr', 'Atru.chr8.1999' => 'acertr', 'Atru.chr9.1436' => 'acertr', 'AUR62004211' => 'cqu', 'AUR62004548' => 'cqu', 'AUR62013637' => 'cqu', 'AUR62022662' => 'cqu', 'AUR62025777' => 'cqu', 'AUR62042386' => 'cqu', 'BcaB01g02310' => 'bca', 'BcaB01g06062' => 'bca', 'BcaB02g08975' => 'bca', 'BcaB02g08980' => 'bca', 'BcaC01g04228' => 'bca', 'BcaC01g06830' => 'bca', 'BcaC02g10186' => 'bca', 'BcaC02g12214' => 'bca', 'BcaC04g24101' => 'bca', 'BcaC05g29520' => 'bca', 'BcaC05g29661' => 'bca', 'BcaC06g32130' => 'bca', 'BcaC06g32131' => 'bca', 'BcaC07g40601' => 'bca', 'BcaC07g42641' => 'bca', 'BcaNung01038' => 'bca', 'BcaNung01676' => 'bca', 'BcaNung02480' => 'bca', 'BcaNung07376' => 'bca', 'BolC3t16146H' => 'bol', 'BolC3t16637H' => 'bol', 'BolC4t22257H' => 'bol', 'BolC4t24728H' => 'bol', 'BolC5t34517H' => 'bol', 'BolC7t45703H' => 'bol', 'BolC8t51166H' => 'bol', 'BolC9t53038H' => 'bol', 'BolC9t60000H' => 'bol', 'BraA01t01345Z' => 'bra', 'BraA01t01346Z' => 'bra', 'BraA01t01348Z' => 'bra', 'BraA03t12347Z' => 'bra', 'BraA03t12775Z' => 'bra', 'BraA03t14439Z' => 'bra', 'BraA04t15860Z' => 'bra', 'BraA05t19511Z' => 'bra', 'BraA05t22746Z' => 'bra', 'BraA09t35767Z' => 'bra', 'BraA09t40732Z' => 'bra', 'BraA10t45233Z' => 'bra', 'C03p38720' => 'bna', 'C03p43680' => 'bna', 'C04p06350' => 'bna', 'C04p31800' => 'bna', 'C05p58680' => 'bna', 'C07p52110' => 'bna', 'C08p35760' => 'bna', 'C09p01050' => 'bna', 'C09p72600' => 'bna', 'CAN.G106.2' => 'can', 'CAN.G1482.1' => 'can', 'CAN.G324.12' => 'can', 'CAN.G388.20' => 'can', 'CAN.G412.7' => 'can', 'CAN.G694.32' => 'can', 'CAN.G92.12' => 'can', 'CANSAT11G2353' => 'cansat', 'CANSAT21G1398' => 'cansat', 'CANSAT56G2456' => 'cansat', 'CANSAT56G3031' => 'cansat', 'CANSAT56G4539' => 'cansat', 'CARHR083680' => 'chi', 'CARHR171190' => 'chi', 'CARHR209010' => 'chi', 'CARHR229680' => 'chi', 'CARHR249490' => 'chi', 'Carub.0003s0844' => 'cru', 'Carub.0005s2755' => 'cru', 'Carub.0006s0322' => 'cru', 'Carub.0006s3586' => 'cru', 'Carub.0007s1855' => 'cru', 'Ca_07808_v3' => 'car', 'Ca_09535_v3' => 'car', 'Ca_10548_v3' => 'car', 'Ca_19913_v3' => 'car', 'Ca_19916_v3' => 'car', 'Ca_19975_v3' => 'car', 'CBR_g22876' => 'cbr', 'CBR_g22879' => 'cbr', 'CBR_g38491' => 'cbr', 'CBR_g54185' => 'cbr', 'CBR_g54190' => 'cbr', 'Cc02_g11020' => 'ccan', 'Cc02_g23920' => 'ccan', 'Cc02_g39860' => 'ccan', 'Cc02_g39870' => 'ccan', 'Cc03_g06760' => 'ccan', 'Cc06_g02450' => 'ccan', 'Cc09_g09450' => 'ccan', 'CDE02G1959' => 'cde', 'CDE04G0600' => 'cde', 'CDE07G1996' => 'cde', 'CDE07G2078' => 'cde', 'CDE11G0611' => 'cde', 'Cfa001683' => 'cfa', 'Cfa001734' => 'cfa', 'Cfa001737' => 'cfa', 'Cfa003751' => 'cfa', 'Cfa012019' => 'cfa', 'Cfa017353' => 'cfa', 'Cfa017732' => 'cfa', 'Cfa022464' => 'cfa', 'Ciclev10012400m.g' => 'ccl', 'Ciclev10021242m.g' => 'ccl', 'Ciclev10021302m.g' => 'ccl', 'Ciclev10021463m.g' => 'ccl', 'Ciclev10032359m.g' => 'ccl', 'CiPaw.01G081000' => 'cil', 'CiPaw.01G262500' => 'cil', 'CiPaw.01G269800' => 'cil', 'CiPaw.02G168400' => 'cil', 'CiPaw.05G119500' => 'cil', 'CiPaw.11G147300' => 'cil', 'ClCG01G003630' => 'cla', 'ClCG05G000510' => 'cla', 'ClCG05G002300' => 'cla', 'ClCG08G007650' => 'cla', 'ClCG10G021250' => 'cla', 'COL.COLO4_06218' => 'col', 'COL.COLO4_12538' => 'col', 'COL.COLO4_14775' => 'col', 'COL.COLO4_23875' => 'col', 'Cpa.g.sc141.16' => 'cpa', 'Cpa.g.sc169.16' => 'cpa', 'Cpa.g.sc244.4' => 'cpa', 'Cpa.g.sc244.5' => 'cpa', 'Cpa.g.sc29.87' => 'cpa', 'Cpa.g.sc53.115' => 'cpa', 'Cre03.g207502' => 'cre', 'Cre06.g277000' => 'cre', 'Cre09.g394050' => 'cre', 'CsaV3_3G007680' => 'csa', 'CsaV3_3G009710' => 'csa', 'CsaV3_3G034790' => 'csa', 'CsaV3_5G003750' => 'csa', 'CsaV3_6G036620' => 'csa', 'CSS0002288' => 'camsi', 'CSS0011250' => 'camsi', 'CSS0021619' => 'camsi', 'CSS0046701' => 'camsi', 'DCAR_006420' => 'dca', 'DCAR_006865' => 'dca', 'DCAR_008558' => 'dca', 'DCAR_028754' => 'dca', 'DCAR_028755' => 'dca', 'Dinv31218' => 'din', 'Dinv32371' => 'din', 'Dinv34250' => 'din', 'Dinv37156' => 'din', 'Dinv43704' => 'din', 'Duzib093G1811' => 'dzi', 'Duzib106G1622' => 'dzi', 'Duzib114G0504' => 'dzi', 'Duzib128G0338' => 'dzi', 'Duzib128G1577' => 'dzi', 'Duzib133G0104' => 'dzi', 'Duzib133G1080' => 'dzi', 'Duzib138G0324' => 'dzi', 'Duzib138G0394' => 'dzi', 'Duzib205G0122' => 'dzi', 'Duzib268G1020' => 'dzi', 'Duzib268G1359' => 'dzi', 'ECA232G3929' => 'eca', 'ECA236G2210' => 'eca', 'ECA236G2287' => 'eca', 'ECA240G4568' => 'eca', 'ECA247G0894' => 'eca', 'EL10Ac1g00200' => 'bvu', 'EL10Ac1g00886' => 'bvu', 'EL10As1g23091' => 'bvu', 'EL10As1g23092' => 'bvu', 'Eucgr.A01284' => 'egr', 'Eucgr.A01285' => 'egr', 'Eucgr.D02456' => 'egr', 'Eucgr.E00018' => 'egr', 'Eucgr.E01439' => 'egr', 'Eucgr.G02859' => 'egr', 'FAN01G0168' => 'fan', 'FAN01G0453' => 'fan', 'FAN01G2761' => 'fan', 'FAN02G1239' => 'fan', 'FAN03G0645' => 'fan', 'FAN03G2707' => 'fan', 'FAN03G2978' => 'fan', 'FAN04G0227' => 'fan', 'FAN06G0091' => 'fan', 'FAN06G1418' => 'fan', 'FAN06G1512' => 'fan', 'FAN06G1986' => 'fan', 'FAN06G2905' => 'fan', 'FAN06G4325' => 'fan', 'FAN08G0033' => 'fan', 'FAN09G0642' => 'fan', 'FAN10G1763' => 'fan', 'FAN10G2026' => 'fan', 'FAN10G2513' => 'fan', 'FAN10G3402' => 'fan', 'FAN10G3564' => 'fan', 'FAN10G3987' => 'fan', 'FAN13G1490' => 'fan', 'FAN14G5857' => 'fan', 'FAN18G1188' => 'fan', 'FvH4_5g00750' => 'fve', 'FvH4_6g13410' => 'fve', 'FvH4_7g11740' => 'fve', 'FvH4_7g17410' => 'fve', 'FvH4_7g18860' => 'fve', 'Glyma.01G099100' => 'gma', 'Glyma.01G142300' => 'gma', 'Glyma.03G025500' => 'gma', 'Glyma.03G069700' => 'gma', 'Glyma.03G260000' => 'gma', 'Glyma.09G269800' => 'gma', 'Glyma.10G208700' => 'gma', 'Glyma.18G220400' => 'gma', 'Glyma.20G182000' => 'gma', 'Gohir.A01G221726' => 'ghi', 'Gohir.A07G134600' => 'ghi', 'Gohir.A07G146000' => 'ghi', 'Gohir.A08G173900' => 'ghi', 'Gohir.A09G194900' => 'ghi', 'Gohir.A10G204100' => 'ghi', 'Gohir.A11G080600' => 'ghi', 'Gohir.A11G327500' => 'ghi', 'Gohir.A12G101800' => 'ghi', 'Gohir.D01G211200' => 'ghi', 'Gohir.D07G139200' => 'ghi', 'Gohir.D07G152100' => 'ghi', 'Gohir.D08G192600' => 'ghi', 'Gohir.D09G189200' => 'ghi', 'Gohir.D10G212000' => 'ghi', 'Gohir.D11G085200' => 'ghi', 'Gohir.D11G346400' => 'ghi', 'Gohir.D12G104800' => 'ghi', 'Gorai.001G151300' => 'gra', 'Gorai.001G174100' => 'gra', 'Gorai.002G257000' => 'gra', 'Gorai.004G202600' => 'gra', 'Gorai.007G090900' => 'gra', 'Gorai.007G376700' => 'gra', 'Gorai.008G114100' => 'gra', 'Gorai.011G237900' => 'gra', 'GSVIVG01005450001' => 'vvi', 'GSVIVG01016232001' => 'vvi', 'GSVIVG01026157001' => 'vvi', 'GSVIVG01027419001' => 'vvi', 'GSVIVG01027631001' => 'vvi', 'GSVIVG01034143001' => 'vvi', 'HanXRQChr03g0093921' => 'han', 'HanXRQChr04g0120001' => 'han', 'HanXRQChr04g0122561' => 'han', 'HanXRQChr09g0246851' => 'han', 'HanXRQChr10g0293311' => 'han', 'HanXRQChr13g0425231' => 'han', 'HanXRQChr16g0532571' => 'han', 'Haze_09050' => 'cav', 'Haze_15715' => 'cav', 'Haze_15716' => 'cav', 'Haze_16803' => 'cav', 'Haze_16850' => 'cav', 'Hma1.2p1_0301F.1_g118655' => 'hma', 'Hma1.2p1_0309F.1_g120590' => 'hma', 'Hma1.2p1_0936F.1_g238900' => 'hma', 'Hma1.2p1_3552F.1_g336740' => 'hma', 'HPP92_003520' => 'vpl', 'HPP92_006628' => 'vpl', 'HPP92_006645' => 'vpl', 'HPP92_014669' => 'vpl', 'HPP92_015077' => 'vpl', 'Hund16742' => 'sun', 'Hund17022' => 'sun', 'Lalb_Chr02g0152131' => 'lal', 'Lalb_Chr05g0225371' => 'lal', 'Lalb_Chr07g0189841' => 'lal', 'Lalb_Chr07g0192961' => 'lal', 'Lalb_Chr12g0208221' => 'lal', 'Lalb_Chr13g0291211' => 'lal', 'Lalb_Chr13g0291781' => 'lal', 'Lalb_Chr18g0044651' => 'lal', 'Lalb_Chr21g0313731' => 'lal', 'Lj1g0022533' => 'lja', 'Lj2A18T50' => 'lonja', 'Lj2A92G93' => 'lonja', 'Lj3A965T73' => 'lonja', 'Lj3g0000673' => 'lja', 'Lj3g0002666' => 'lja', 'Lj4g0016985' => 'lja', 'Lj5g0003625' => 'lja', 'Lj7A529G36' => 'lonja', 'Lj9A569T49' => 'lonja', 'Lj9A604T63' => 'lonja', 'Lsat_1_v5_gn_3_132060' => 'lsa', 'Lsat_1_v5_gn_4_68941' => 'lsa', 'Lsat_1_v5_gn_5_95580' => 'lsa', 'Lsat_1_v5_gn_7_161' => 'lsa', 'Lsat_1_v5_gn_7_7041' => 'lsa', 'Lsat_1_v5_gn_9_33481' => 'lsa', 'Lsat_1_v5_gn_9_68260' => 'lsa', 'Manes.01G073100' => 'mes', 'Manes.01G266300' => 'mes', 'Manes.02G033300' => 'mes', 'Manes.05G017900' => 'mes', 'Manes.05G046100' => 'mes', 'Manes.08G080900' => 'mes', 'Manes.10G049400' => 'mes', 'Mapoly0009s0186' => 'mpo', 'Mapoly0036s0118' => 'mpo', 'Mapoly0101s0046' => 'mpo', 'MBI04_g30218_MAGBIO' => 'mbi', 'MBI04_g35564_MAGBIO' => 'mbi', 'MBI12_g34011_MAGBIO' => 'mbi', 'MBI14_g04655_MAGBIO' => 'mbi', 'MCO07G653' => 'mco', 'MCO10G173' => 'mco', 'MD01G1087100' => 'mdo', 'MD01G1104200' => 'mdo', 'MD02G1205100' => 'mdo', 'MD04G1079200' => 'mdo', 'MD04G1131400' => 'mdo', 'MD07G1121600' => 'mdo', 'MD07G1157300' => 'mdo', 'MD07G1171000' => 'mdo', 'MD12G1144500' => 'mdo', 'Medtr1g094610' => 'mtr', 'Medtr4g021795' => 'mtr', 'Medtr4g023760' => 'mtr', 'Medtr7g118050' => 'mtr', 'MELO3C005582.2' => 'cme', 'MELO3C005989.2' => 'cme', 'MELO3C006192.2' => 'cme', 'MELO3C009248.2' => 'cme', 'MELO3C019817.2' => 'cme', 'Migut.B01625' => 'egut', 'Migut.B01915' => 'egut', 'Migut.F01721' => 'egut', 'Migut.J00314' => 'egut', 'MSTRG.20742' => 'ama', 'MSTRG.8134' => 'ama', 'Nitab4.5_0000096g0010' => 'nta', 'Nitab4.5_0000202g0030' => 'nta', 'Nitab4.5_0000216g0370' => 'nta', 'Nitab4.5_0000457g0230' => 'nta', 'Nitab4.5_0001702g0170' => 'nta', 'Nitab4.5_0003607g0010' => 'nta', 'Nitab4.5_0004917g0020' => 'nta', 'Nitab4.5_0007059g0010' => 'nta', 'Nitab4.5_0007184g0010' => 'nta', 'Nitab4.5_0007346g0020' => 'nta', 'Nn1g00410' => 'nnu', 'Nn1g01252' => 'nnu', 'Nn2g11168' => 'nnu', 'Nn2g13403' => 'nnu', 'Nn2g13760' => 'nnu', 'Nn4g26380' => 'nnu', 'Oeu000806.2' => 'oeu', 'Oeu005788.1' => 'oeu', 'Oeu006900.3' => 'oeu', 'Oeu007797.1' => 'oeu', 'Oeu011932.1' => 'oeu', 'Oeu022739.1' => 'oeu', 'Oeu037918.1' => 'oeu', 'Oeu055490.2' => 'oeu', 'Os01g0844400' => 'osa', 'Os02g0819100' => 'osa', 'Os03g0804300' => 'osa', 'Os05g0458000' => 'osa', 'Os07g0467800' => 'osa', 'Os12g0602200' => 'osa', 'Peaxi162Scf00013g03444' => 'pax', 'Peaxi162Scf00094g01120' => 'pax', 'Peaxi162Scf00191g01211' => 'pax', 'Peaxi162Scf00238g01110' => 'pax', 'Peaxi162Scf00330g00719' => 'pax', 'Peaxi162Scf00627g00018' => 'pax', 'PGR031G2686' => 'pgr', 'PGR042G0809' => 'pgr', 'PGR142G0193' => 'pgr', 'PGSC0003DMG400011066' => 'stu', 'PGSC0003DMG400012041' => 'stu', 'PGSC0003DMG400013678' => 'stu', 'PGSC0003DMG400023477' => 'stu', 'PGSC0003DMG400025956' => 'stu', 'PGSC0003DMG401019151' => 'stu', 'Phvul.006G116400' => 'pvu', 'Phvul.007G097300' => 'pvu', 'Phvul.010G015000' => 'pvu', 'Phvul.010G083900' => 'pvu', 'Potri.001G117100' => 'ptr', 'Potri.002G147300' => 'ptr', 'Potri.003G115600' => 'ptr', 'Potri.006G087400' => 'ptr', 'Potri.010G226100' => 'ptr', 'Potri.014G069200' => 'ptr', 'Potri.014G104000' => 'ptr', 'Potri.016G100200' => 'ptr', 'Pp3c10_20450' => 'ppa', 'Pp3c1_42400' => 'ppa', 'Pp3c3_24390' => 'ppa', 'Pp3c3_2860' => 'ppa', 'PRCOL_00003193' => 'pco', 'Prupe.2G144500' => 'ppe', 'Prupe.2G195700' => 'ppe', 'Prupe.2G209800' => 'ppe', 'Prupe.5G080000' => 'ppe', 'Prupe.6G257900' => 'ppe', 'Psat3g001160' => 'psa', 'Psat6g181880' => 'psa', 'Psat7g233720' => 'psa', 'PSO063G7587' => 'pso', 'PSO339G2145' => 'pso', 'PSO339G3369' => 'pso', 'PSO478G2747' => 'pso', 'PSO513G0140' => 'pso', 'PSO782G1614' => 'pso', 'PSO782G4889' => 'pso', 'PSO782G5485' => 'pso', 'PSO801G0241' => 'pso', 'QL07p048854' => 'qlo', 'QL08p046745' => 'qlo', 'QL08p052606' => 'qlo', 'QL08p053414' => 'qlo', 'QL08p054868' => 'qlo', 'RcHm_v2.0_Chr1g0350251' => 'rch', 'RcHm_v2.0_Chr1g0360851' => 'rch', 'RcHm_v2.0_Chr1g0362791' => 'rch', 'RcHm_v2.0_Chr3g0466281' => 'rch', 'RcHm_v2.0_Chr7g0201481' => 'rch', 'Rhsim01G0148600' => 'rsi', 'Rhsim05G0194400' => 'rsi', 'Rhsim07G0000700' => 'rsi', 'Rhsim07G0000800' => 'rsi', 'Rhsim07G0027900' => 'rsi', 'Rhsim09G0149500' => 'rsi', 'RhsimUnG0186900' => 'rsi', 'Sabra01G0089900' => 'sbr', 'Sabra02G0114700' => 'sbr', 'Sabra02G0116300' => 'sbr', 'Sabra03G0080100' => 'sbr', 'Sabra08G0024300' => 'sbr', 'Sabra10G0174300' => 'sbr', 'Sabra14G0048900' => 'sbr', 'Sabra14G0076500' => 'sbr', 'SalBow5G2513' => 'sbo', 'Sc01g0002300' => 'sci', 'Sc01g0004450' => 'sci', 'Sc06g0001680' => 'sci', 'Sc23g0003580' => 'sci', 'Sed0000913' => 'sed', 'Sed0001655' => 'sed', 'Sed0007745' => 'sed', 'Sed0010951' => 'sed', 'Sed0017599' => 'sed', 'Sed0021405' => 'sed', 'Sed0022810' => 'sed', 'SEGI_07099' => 'sgi', 'SEGI_11931' => 'sgi', 'SEGI_13187' => 'sgi', 'SEGI_29958' => 'sgi', 'SEGI_36351' => 'sgi', 'SGA_v2.0_scaffold126G33770' => 'sas', 'SGA_v2.0_scaffold153G37003' => 'sas', 'SGA_v2.0_scaffold2G01359' => 'sas', 'SGA_v2.0_scaffold5G03064' => 'sas', 'SGA_v2.0_scaffold95G28903' => 'sas', 'SHI12701' => 'shi', 'SHI26410' => 'shi', 'SHI38997' => 'shi', 'SHI53759' => 'shi', 'SHI53886' => 'shi', 'SHI54714' => 'shi', 'SMO011G0041' => 'smo', 'SMO146G0251' => 'smo', 'SMO160G0004' => 'smo', 'SMO174G0057' => 'smo', 'SMO244G0089' => 'smo', 'SMO296G0011' => 'smo', 'Solyc01g091280.3' => 'sly', 'Solyc05g047610.3' => 'sly', 'Solyc05g047640.3' => 'sly', 'Solyc05g055630.3' => 'sly', 'Solyc10g018160.2' => 'sly', 'Solyc10g084820.2' => 'sly', 'Solyc10g086565.2' => 'sly', 'Sopen01g037030' => 'spe', 'Sopen05g027920' => 'spe', 'Sopen05g034070' => 'spe', 'Sopen10g007260' => 'spe', 'Sopen10g034260' => 'spe', 'Sopen10g035950' => 'spe', 'Sp3g07710' => 'spa', 'Sp4g27420' => 'spa', 'Sp5g02450' => 'spa', 'Sp6g01280' => 'spa', 'Sp6g38480' => 'spa', 'Sp7g20780' => 'spa', 'TAR374G1413' => 'tar', 'TAR623G1777' => 'tar', 'TAR629G2370' => 'tar', 'TAR633G1759' => 'tar', 'TAR636G3387' => 'tar', 'THA.LOC104802447' => 'tha', 'THA.LOC104813916' => 'tha', 'THA.LOC104816423' => 'tha', 'THA.LOC104817246' => 'tha', 'THA.LOC104825895' => 'tha', 'Thecc.01G335200' => 'tca', 'Thecc.01G377400' => 'tca', 'Thecc.03G262200' => 'tca', 'Thecc.05G036800' => 'tca', 'Thecc.10G080500' => 'tca', 'Thecc.10G080800' => 'tca', 'Thhalv10001560m.g' => 'esa', 'Thhalv10006120m.g' => 'esa', 'Thhalv10014375m.g' => 'esa', 'Thhalv10021264m.g' => 'esa', 'Thhalv10028856m.g' => 'esa', 'TPR.G1914' => 'tpr', 'TPR.G4757' => 'tpr', 'TPR.G5595' => 'tpr', 'TWI14G0952' => 'twi', 'TWI14G1307' => 'twi', 'TWI38G2143' => 'twi', 'TWI59G0826' => 'twi', 'TWI77G0527' => 'twi', 'TWI81G0150' => 'twi', 'unitig_21.g21018' => 'ugi', 'unitig_26.g9725' => 'ugi', 'unitig_744.g24653' => 'ugi', 'unitig_749.g13778' => 'ugi', 'unitig_899.g15035' => 'ugi', 'vmacro04296' => 'vma', 'vmacro04852' => 'vma', 'vmacro13404' => 'vma', 'vmacro20169' => 'vma', 'vmacro21014' => 'vma', 'VMungo0331G0237' => 'vmu', 'VMungo0331G0706' => 'vmu', 'VMungo0331G1361' => 'vmu', 'VMungo0331G1489' => 'vmu', 'VMungo0540G1037' => 'vmu', 'VMungo0720G2487' => 'vmu', 'VMungo0720G2721' => 'vmu', 'Zm00001eb086860' => 'zma', 'Zm00001eb104760' => 'zma', 'Zm00001eb148220' => 'zma', 'Zm00001eb259030' => 'zma', 'Zm00001eb289590' => 'zma', 'Zm00001eb420150' => 'zma' ) $gf_id = 'HOM05D000968' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000968' ) $data_identifier = 'HOM05D000968' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 19, 'bol' => (int) 9, 'bra' => (int) 12, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 5, 'ccan' => (int) 7, 'cde' => (int) 5, 'cfa' => (int) 8, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 4, 'dca' => (int) 5, 'din' => (int) 5, 'dzi' => (int) 12, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 25, 'fve' => (int) 5, 'gma' => (int) 9, 'ghi' => (int) 18, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 7, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 5, 'sun' => (int) 2, 'lal' => (int) 9, 'lja' => (int) 5, 'lonja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 9, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 2, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 3, 'stu' => (int) 6, 'pvu' => (int) 4, 'ptr' => (int) 8, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 3, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 1, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 5, 'sas' => (int) 5, 'shi' => (int) 6, 'smo' => (int) 6, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 3, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420150' $species_info = array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ) $local_species = 'sbr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000968', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p31690' => 'bna', 'A03p36040' => 'bna', 'A03p53730' => 'bna', 'A04p01410' => 'bna', 'A05p05420' => 'bna', 'A05p39630' => 'bna', 'A05p39640' => 'bna', 'A09p00970' => 'bna', 'A09p53060' => 'bna', 'A10p31890' => 'bna', 'Aa31LG10G15040' => 'aar', 'Aa31LG1G21090' => 'aar', 'Aa31LG1G26900' => 'aar', 'Aa31LG3G1820' => 'aar', 'Aa31LG5G1100' => 'aar', 'Aa31LG6G4740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2265' => 'aag', 'Actinidia07998' => 'ach', 'Actinidia11266' => 'ach', 'Actinidia12682' => 'ach', 'Actinidia26479' => 'ach', 'Actinidia31406' => 'ach', 'Actinidia32437' => 'ach', 'Actinidia38862' => 'ach', 'Ah.05g174230' => 'amhyb', 'Ah.05g179070' => 'amhyb', 'Ah.05g179090' => 'amhyb', 'Ah.12g059950' => 'amhyb', 'AL3G20480' => 'aly', 'AL4G44520' => 'aly', 'AL5G43110' => 'aly', 'AL6G13890' => 'aly', 'AL6G52620' => 'aly', 'AL7G30830' => 'aly', 'Aqoxy1G00899' => 'aox', 'Aqoxy5G04333' => 'aox', 'Aqoxy7G00641' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3IZ0NN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4EF6AW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W9P8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79GA3M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C43NQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFCU6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G95YVJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCHK29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LU1UG8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX91RN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGB4B1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8DA0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9H7JI' => 'arhy', 'AT3G09320' => 'ath', 'AT3G60800' => 'ath', 'AT4G00840' => 'ath', 'AT4G22750' => 'ath', 'AT5G04270' => 'ath', 'ATR0090G003' => 'atr', 'ATR0559G349' => 'atr', 'ATR0680G261' => 'atr', 'ATR0810G048' => 'atr', 'Atru.chr12.831' => 'acertr', 'Atru.chr5.303' => 'acertr', 'Atru.chr5.748' => 'acertr', 'Atru.chr8.1999' => 'acertr', 'Atru.chr9.1436' => 'acertr', 'AUR62004211' => 'cqu', 'AUR62004548' => 'cqu', 'AUR62013637' => 'cqu', 'AUR62022662' => 'cqu', 'AUR62025777' => 'cqu', 'AUR62042386' => 'cqu', 'BcaB01g02310' => 'bca', 'BcaB01g06062' => 'bca', 'BcaB02g08975' => 'bca', 'BcaB02g08980' => 'bca', 'BcaC01g04228' => 'bca', 'BcaC01g06830' => 'bca', 'BcaC02g10186' => 'bca', 'BcaC02g12214' => 'bca', 'BcaC04g24101' => 'bca', 'BcaC05g29520' => 'bca', 'BcaC05g29661' => 'bca', 'BcaC06g32130' => 'bca', 'BcaC06g32131' => 'bca', 'BcaC07g40601' => 'bca', 'BcaC07g42641' => 'bca', 'BcaNung01038' => 'bca', 'BcaNung01676' => 'bca', 'BcaNung02480' => 'bca', 'BcaNung07376' => 'bca', 'BolC3t16146H' => 'bol', 'BolC3t16637H' => 'bol', 'BolC4t22257H' => 'bol', 'BolC4t24728H' => 'bol', 'BolC5t34517H' => 'bol', 'BolC7t45703H' => 'bol', 'BolC8t51166H' => 'bol', 'BolC9t53038H' => 'bol', 'BolC9t60000H' => 'bol', 'BraA01t01345Z' => 'bra', 'BraA01t01346Z' => 'bra', 'BraA01t01348Z' => 'bra', 'BraA03t12347Z' => 'bra', 'BraA03t12775Z' => 'bra', 'BraA03t14439Z' => 'bra', 'BraA04t15860Z' => 'bra', 'BraA05t19511Z' => 'bra', 'BraA05t22746Z' => 'bra', 'BraA09t35767Z' => 'bra', 'BraA09t40732Z' => 'bra', 'BraA10t45233Z' => 'bra', 'C03p38720' => 'bna', 'C03p43680' => 'bna', 'C04p06350' => 'bna', 'C04p31800' => 'bna', 'C05p58680' => 'bna', 'C07p52110' => 'bna', 'C08p35760' => 'bna', 'C09p01050' => 'bna', 'C09p72600' => 'bna', 'CAN.G106.2' => 'can', 'CAN.G1482.1' => 'can', 'CAN.G324.12' => 'can', 'CAN.G388.20' => 'can', 'CAN.G412.7' => 'can', 'CAN.G694.32' => 'can', 'CAN.G92.12' => 'can', 'CANSAT11G2353' => 'cansat', 'CANSAT21G1398' => 'cansat', 'CANSAT56G2456' => 'cansat', 'CANSAT56G3031' => 'cansat', 'CANSAT56G4539' => 'cansat', 'CARHR083680' => 'chi', 'CARHR171190' => 'chi', 'CARHR209010' => 'chi', 'CARHR229680' => 'chi', 'CARHR249490' => 'chi', 'Carub.0003s0844' => 'cru', 'Carub.0005s2755' => 'cru', 'Carub.0006s0322' => 'cru', 'Carub.0006s3586' => 'cru', 'Carub.0007s1855' => 'cru', 'Ca_07808_v3' => 'car', 'Ca_09535_v3' => 'car', 'Ca_10548_v3' => 'car', 'Ca_19913_v3' => 'car', 'Ca_19916_v3' => 'car', 'Ca_19975_v3' => 'car', 'CBR_g22876' => 'cbr', 'CBR_g22879' => 'cbr', 'CBR_g38491' => 'cbr', 'CBR_g54185' => 'cbr', 'CBR_g54190' => 'cbr', 'Cc02_g11020' => 'ccan', 'Cc02_g23920' => 'ccan', 'Cc02_g39860' => 'ccan', 'Cc02_g39870' => 'ccan', 'Cc03_g06760' => 'ccan', 'Cc06_g02450' => 'ccan', 'Cc09_g09450' => 'ccan', 'CDE02G1959' => 'cde', 'CDE04G0600' => 'cde', 'CDE07G1996' => 'cde', 'CDE07G2078' => 'cde', 'CDE11G0611' => 'cde', 'Cfa001683' => 'cfa', 'Cfa001734' => 'cfa', 'Cfa001737' => 'cfa', 'Cfa003751' => 'cfa', 'Cfa012019' => 'cfa', 'Cfa017353' => 'cfa', 'Cfa017732' => 'cfa', 'Cfa022464' => 'cfa', 'Ciclev10012400m.g' => 'ccl', 'Ciclev10021242m.g' => 'ccl', 'Ciclev10021302m.g' => 'ccl', 'Ciclev10021463m.g' => 'ccl', 'Ciclev10032359m.g' => 'ccl', 'CiPaw.01G081000' => 'cil', 'CiPaw.01G262500' => 'cil', 'CiPaw.01G269800' => 'cil', 'CiPaw.02G168400' => 'cil', 'CiPaw.05G119500' => 'cil', 'CiPaw.11G147300' => 'cil', 'ClCG01G003630' => 'cla', 'ClCG05G000510' => 'cla', 'ClCG05G002300' => 'cla', 'ClCG08G007650' => 'cla', 'ClCG10G021250' => 'cla', 'COL.COLO4_06218' => 'col', 'COL.COLO4_12538' => 'col', 'COL.COLO4_14775' => 'col', 'COL.COLO4_23875' => 'col', 'Cpa.g.sc141.16' => 'cpa', 'Cpa.g.sc169.16' => 'cpa', 'Cpa.g.sc244.4' => 'cpa', 'Cpa.g.sc244.5' => 'cpa', 'Cpa.g.sc29.87' => 'cpa', 'Cpa.g.sc53.115' => 'cpa', 'Cre03.g207502' => 'cre', 'Cre06.g277000' => 'cre', 'Cre09.g394050' => 'cre', 'CsaV3_3G007680' => 'csa', 'CsaV3_3G009710' => 'csa', 'CsaV3_3G034790' => 'csa', 'CsaV3_5G003750' => 'csa', 'CsaV3_6G036620' => 'csa', 'CSS0002288' => 'camsi', 'CSS0011250' => 'camsi', 'CSS0021619' => 'camsi', 'CSS0046701' => 'camsi', 'DCAR_006420' => 'dca', 'DCAR_006865' => 'dca', 'DCAR_008558' => 'dca', 'DCAR_028754' => 'dca', 'DCAR_028755' => 'dca', 'Dinv31218' => 'din', 'Dinv32371' => 'din', 'Dinv34250' => 'din', 'Dinv37156' => 'din', 'Dinv43704' => 'din', 'Duzib093G1811' => 'dzi', 'Duzib106G1622' => 'dzi', 'Duzib114G0504' => 'dzi', 'Duzib128G0338' => 'dzi', 'Duzib128G1577' => 'dzi', 'Duzib133G0104' => 'dzi', 'Duzib133G1080' => 'dzi', 'Duzib138G0324' => 'dzi', 'Duzib138G0394' => 'dzi', 'Duzib205G0122' => 'dzi', 'Duzib268G1020' => 'dzi', 'Duzib268G1359' => 'dzi', 'ECA232G3929' => 'eca', 'ECA236G2210' => 'eca', 'ECA236G2287' => 'eca', 'ECA240G4568' => 'eca', 'ECA247G0894' => 'eca', 'EL10Ac1g00200' => 'bvu', 'EL10Ac1g00886' => 'bvu', 'EL10As1g23091' => 'bvu', 'EL10As1g23092' => 'bvu', 'Eucgr.A01284' => 'egr', 'Eucgr.A01285' => 'egr', 'Eucgr.D02456' => 'egr', 'Eucgr.E00018' => 'egr', 'Eucgr.E01439' => 'egr', 'Eucgr.G02859' => 'egr', 'FAN01G0168' => 'fan', 'FAN01G0453' => 'fan', 'FAN01G2761' => 'fan', 'FAN02G1239' => 'fan', 'FAN03G0645' => 'fan', 'FAN03G2707' => 'fan', 'FAN03G2978' => 'fan', 'FAN04G0227' => 'fan', 'FAN06G0091' => 'fan', 'FAN06G1418' => 'fan', 'FAN06G1512' => 'fan', 'FAN06G1986' => 'fan', 'FAN06G2905' => 'fan', 'FAN06G4325' => 'fan', 'FAN08G0033' => 'fan', 'FAN09G0642' => 'fan', 'FAN10G1763' => 'fan', 'FAN10G2026' => 'fan', 'FAN10G2513' => 'fan', 'FAN10G3402' => 'fan', 'FAN10G3564' => 'fan', 'FAN10G3987' => 'fan', 'FAN13G1490' => 'fan', 'FAN14G5857' => 'fan', 'FAN18G1188' => 'fan', 'FvH4_5g00750' => 'fve', 'FvH4_6g13410' => 'fve', 'FvH4_7g11740' => 'fve', 'FvH4_7g17410' => 'fve', 'FvH4_7g18860' => 'fve', 'Glyma.01G099100' => 'gma', 'Glyma.01G142300' => 'gma', 'Glyma.03G025500' => 'gma', 'Glyma.03G069700' => 'gma', 'Glyma.03G260000' => 'gma', 'Glyma.09G269800' => 'gma', 'Glyma.10G208700' => 'gma', 'Glyma.18G220400' => 'gma', 'Glyma.20G182000' => 'gma', 'Gohir.A01G221726' => 'ghi', 'Gohir.A07G134600' => 'ghi', 'Gohir.A07G146000' => 'ghi', 'Gohir.A08G173900' => 'ghi', 'Gohir.A09G194900' => 'ghi', 'Gohir.A10G204100' => 'ghi', 'Gohir.A11G080600' => 'ghi', 'Gohir.A11G327500' => 'ghi', 'Gohir.A12G101800' => 'ghi', 'Gohir.D01G211200' => 'ghi', 'Gohir.D07G139200' => 'ghi', 'Gohir.D07G152100' => 'ghi', 'Gohir.D08G192600' => 'ghi', 'Gohir.D09G189200' => 'ghi', 'Gohir.D10G212000' => 'ghi', 'Gohir.D11G085200' => 'ghi', 'Gohir.D11G346400' => 'ghi', 'Gohir.D12G104800' => 'ghi', 'Gorai.001G151300' => 'gra', 'Gorai.001G174100' => 'gra', 'Gorai.002G257000' => 'gra', 'Gorai.004G202600' => 'gra', 'Gorai.007G090900' => 'gra', 'Gorai.007G376700' => 'gra', 'Gorai.008G114100' => 'gra', 'Gorai.011G237900' => 'gra', 'GSVIVG01005450001' => 'vvi', 'GSVIVG01016232001' => 'vvi', 'GSVIVG01026157001' => 'vvi', 'GSVIVG01027419001' => 'vvi', 'GSVIVG01027631001' => 'vvi', 'GSVIVG01034143001' => 'vvi', 'HanXRQChr03g0093921' => 'han', 'HanXRQChr04g0120001' => 'han', 'HanXRQChr04g0122561' => 'han', 'HanXRQChr09g0246851' => 'han', 'HanXRQChr10g0293311' => 'han', 'HanXRQChr13g0425231' => 'han', 'HanXRQChr16g0532571' => 'han', 'Haze_09050' => 'cav', 'Haze_15715' => 'cav', 'Haze_15716' => 'cav', 'Haze_16803' => 'cav', 'Haze_16850' => 'cav', 'Hma1.2p1_0301F.1_g118655' => 'hma', 'Hma1.2p1_0309F.1_g120590' => 'hma', 'Hma1.2p1_0936F.1_g238900' => 'hma', 'Hma1.2p1_3552F.1_g336740' => 'hma', 'HPP92_003520' => 'vpl', 'HPP92_006628' => 'vpl', 'HPP92_006645' => 'vpl', 'HPP92_014669' => 'vpl', 'HPP92_015077' => 'vpl', 'Hund16742' => 'sun', 'Hund17022' => 'sun', 'Lalb_Chr02g0152131' => 'lal', 'Lalb_Chr05g0225371' => 'lal', 'Lalb_Chr07g0189841' => 'lal', 'Lalb_Chr07g0192961' => 'lal', 'Lalb_Chr12g0208221' => 'lal', 'Lalb_Chr13g0291211' => 'lal', 'Lalb_Chr13g0291781' => 'lal', 'Lalb_Chr18g0044651' => 'lal', 'Lalb_Chr21g0313731' => 'lal', 'Lj1g0022533' => 'lja', 'Lj2A18T50' => 'lonja', 'Lj2A92G93' => 'lonja', 'Lj3A965T73' => 'lonja', 'Lj3g0000673' => 'lja', 'Lj3g0002666' => 'lja', 'Lj4g0016985' => 'lja', 'Lj5g0003625' => 'lja', 'Lj7A529G36' => 'lonja', 'Lj9A569T49' => 'lonja', 'Lj9A604T63' => 'lonja', 'Lsat_1_v5_gn_3_132060' => 'lsa', 'Lsat_1_v5_gn_4_68941' => 'lsa', 'Lsat_1_v5_gn_5_95580' => 'lsa', 'Lsat_1_v5_gn_7_161' => 'lsa', 'Lsat_1_v5_gn_7_7041' => 'lsa', 'Lsat_1_v5_gn_9_33481' => 'lsa', 'Lsat_1_v5_gn_9_68260' => 'lsa', 'Manes.01G073100' => 'mes', 'Manes.01G266300' => 'mes', 'Manes.02G033300' => 'mes', 'Manes.05G017900' => 'mes', 'Manes.05G046100' => 'mes', 'Manes.08G080900' => 'mes', 'Manes.10G049400' => 'mes', 'Mapoly0009s0186' => 'mpo', 'Mapoly0036s0118' => 'mpo', 'Mapoly0101s0046' => 'mpo', 'MBI04_g30218_MAGBIO' => 'mbi', 'MBI04_g35564_MAGBIO' => 'mbi', 'MBI12_g34011_MAGBIO' => 'mbi', 'MBI14_g04655_MAGBIO' => 'mbi', 'MCO07G653' => 'mco', 'MCO10G173' => 'mco', 'MD01G1087100' => 'mdo', 'MD01G1104200' => 'mdo', 'MD02G1205100' => 'mdo', 'MD04G1079200' => 'mdo', 'MD04G1131400' => 'mdo', 'MD07G1121600' => 'mdo', 'MD07G1157300' => 'mdo', 'MD07G1171000' => 'mdo', 'MD12G1144500' => 'mdo', 'Medtr1g094610' => 'mtr', 'Medtr4g021795' => 'mtr', 'Medtr4g023760' => 'mtr', 'Medtr7g118050' => 'mtr', 'MELO3C005582.2' => 'cme', 'MELO3C005989.2' => 'cme', 'MELO3C006192.2' => 'cme', 'MELO3C009248.2' => 'cme', 'MELO3C019817.2' => 'cme', 'Migut.B01625' => 'egut', 'Migut.B01915' => 'egut', 'Migut.F01721' => 'egut', 'Migut.J00314' => 'egut', 'MSTRG.20742' => 'ama', 'MSTRG.8134' => 'ama', 'Nitab4.5_0000096g0010' => 'nta', 'Nitab4.5_0000202g0030' => 'nta', 'Nitab4.5_0000216g0370' => 'nta', 'Nitab4.5_0000457g0230' => 'nta', 'Nitab4.5_0001702g0170' => 'nta', 'Nitab4.5_0003607g0010' => 'nta', 'Nitab4.5_0004917g0020' => 'nta', 'Nitab4.5_0007059g0010' => 'nta', 'Nitab4.5_0007184g0010' => 'nta', 'Nitab4.5_0007346g0020' => 'nta', 'Nn1g00410' => 'nnu', 'Nn1g01252' => 'nnu', 'Nn2g11168' => 'nnu', 'Nn2g13403' => 'nnu', 'Nn2g13760' => 'nnu', 'Nn4g26380' => 'nnu', 'Oeu000806.2' => 'oeu', 'Oeu005788.1' => 'oeu', 'Oeu006900.3' => 'oeu', 'Oeu007797.1' => 'oeu', 'Oeu011932.1' => 'oeu', 'Oeu022739.1' => 'oeu', 'Oeu037918.1' => 'oeu', 'Oeu055490.2' => 'oeu', 'Os01g0844400' => 'osa', 'Os02g0819100' => 'osa', 'Os03g0804300' => 'osa', 'Os05g0458000' => 'osa', 'Os07g0467800' => 'osa', 'Os12g0602200' => 'osa', 'Peaxi162Scf00013g03444' => 'pax', 'Peaxi162Scf00094g01120' => 'pax', 'Peaxi162Scf00191g01211' => 'pax', 'Peaxi162Scf00238g01110' => 'pax', 'Peaxi162Scf00330g00719' => 'pax', 'Peaxi162Scf00627g00018' => 'pax', 'PGR031G2686' => 'pgr', 'PGR042G0809' => 'pgr', 'PGR142G0193' => 'pgr', 'PGSC0003DMG400011066' => 'stu', 'PGSC0003DMG400012041' => 'stu', 'PGSC0003DMG400013678' => 'stu', 'PGSC0003DMG400023477' => 'stu', 'PGSC0003DMG400025956' => 'stu', 'PGSC0003DMG401019151' => 'stu', 'Phvul.006G116400' => 'pvu', 'Phvul.007G097300' => 'pvu', 'Phvul.010G015000' => 'pvu', 'Phvul.010G083900' => 'pvu', 'Potri.001G117100' => 'ptr', 'Potri.002G147300' => 'ptr', 'Potri.003G115600' => 'ptr', 'Potri.006G087400' => 'ptr', 'Potri.010G226100' => 'ptr', 'Potri.014G069200' => 'ptr', 'Potri.014G104000' => 'ptr', 'Potri.016G100200' => 'ptr', 'Pp3c10_20450' => 'ppa', 'Pp3c1_42400' => 'ppa', 'Pp3c3_24390' => 'ppa', 'Pp3c3_2860' => 'ppa', 'PRCOL_00003193' => 'pco', 'Prupe.2G144500' => 'ppe', 'Prupe.2G195700' => 'ppe', 'Prupe.2G209800' => 'ppe', 'Prupe.5G080000' => 'ppe', 'Prupe.6G257900' => 'ppe', 'Psat3g001160' => 'psa', 'Psat6g181880' => 'psa', 'Psat7g233720' => 'psa', 'PSO063G7587' => 'pso', 'PSO339G2145' => 'pso', 'PSO339G3369' => 'pso', 'PSO478G2747' => 'pso', 'PSO513G0140' => 'pso', 'PSO782G1614' => 'pso', 'PSO782G4889' => 'pso', 'PSO782G5485' => 'pso', 'PSO801G0241' => 'pso', 'QL07p048854' => 'qlo', 'QL08p046745' => 'qlo', 'QL08p052606' => 'qlo', 'QL08p053414' => 'qlo', 'QL08p054868' => 'qlo', 'RcHm_v2.0_Chr1g0350251' => 'rch', 'RcHm_v2.0_Chr1g0360851' => 'rch', 'RcHm_v2.0_Chr1g0362791' => 'rch', 'RcHm_v2.0_Chr3g0466281' => 'rch', 'RcHm_v2.0_Chr7g0201481' => 'rch', 'Rhsim01G0148600' => 'rsi', 'Rhsim05G0194400' => 'rsi', 'Rhsim07G0000700' => 'rsi', 'Rhsim07G0000800' => 'rsi', 'Rhsim07G0027900' => 'rsi', 'Rhsim09G0149500' => 'rsi', 'RhsimUnG0186900' => 'rsi', 'Sabra01G0089900' => 'sbr', 'Sabra02G0114700' => 'sbr', 'Sabra02G0116300' => 'sbr', 'Sabra03G0080100' => 'sbr', 'Sabra08G0024300' => 'sbr', 'Sabra10G0174300' => 'sbr', 'Sabra14G0048900' => 'sbr', 'Sabra14G0076500' => 'sbr', 'SalBow5G2513' => 'sbo', 'Sc01g0002300' => 'sci', 'Sc01g0004450' => 'sci', 'Sc06g0001680' => 'sci', 'Sc23g0003580' => 'sci', 'Sed0000913' => 'sed', 'Sed0001655' => 'sed', 'Sed0007745' => 'sed', 'Sed0010951' => 'sed', 'Sed0017599' => 'sed', 'Sed0021405' => 'sed', 'Sed0022810' => 'sed', 'SEGI_07099' => 'sgi', 'SEGI_11931' => 'sgi', 'SEGI_13187' => 'sgi', 'SEGI_29958' => 'sgi', 'SEGI_36351' => 'sgi', 'SGA_v2.0_scaffold126G33770' => 'sas', 'SGA_v2.0_scaffold153G37003' => 'sas', 'SGA_v2.0_scaffold2G01359' => 'sas', 'SGA_v2.0_scaffold5G03064' => 'sas', 'SGA_v2.0_scaffold95G28903' => 'sas', 'SHI12701' => 'shi', 'SHI26410' => 'shi', 'SHI38997' => 'shi', 'SHI53759' => 'shi', 'SHI53886' => 'shi', 'SHI54714' => 'shi', 'SMO011G0041' => 'smo', 'SMO146G0251' => 'smo', 'SMO160G0004' => 'smo', 'SMO174G0057' => 'smo', 'SMO244G0089' => 'smo', 'SMO296G0011' => 'smo', 'Solyc01g091280.3' => 'sly', 'Solyc05g047610.3' => 'sly', 'Solyc05g047640.3' => 'sly', 'Solyc05g055630.3' => 'sly', 'Solyc10g018160.2' => 'sly', 'Solyc10g084820.2' => 'sly', 'Solyc10g086565.2' => 'sly', 'Sopen01g037030' => 'spe', 'Sopen05g027920' => 'spe', 'Sopen05g034070' => 'spe', 'Sopen10g007260' => 'spe', 'Sopen10g034260' => 'spe', 'Sopen10g035950' => 'spe', 'Sp3g07710' => 'spa', 'Sp4g27420' => 'spa', 'Sp5g02450' => 'spa', 'Sp6g01280' => 'spa', 'Sp6g38480' => 'spa', 'Sp7g20780' => 'spa', 'TAR374G1413' => 'tar', 'TAR623G1777' => 'tar', 'TAR629G2370' => 'tar', 'TAR633G1759' => 'tar', 'TAR636G3387' => 'tar', 'THA.LOC104802447' => 'tha', 'THA.LOC104813916' => 'tha', 'THA.LOC104816423' => 'tha', 'THA.LOC104817246' => 'tha', 'THA.LOC104825895' => 'tha', 'Thecc.01G335200' => 'tca', 'Thecc.01G377400' => 'tca', 'Thecc.03G262200' => 'tca', 'Thecc.05G036800' => 'tca', 'Thecc.10G080500' => 'tca', 'Thecc.10G080800' => 'tca', 'Thhalv10001560m.g' => 'esa', 'Thhalv10006120m.g' => 'esa', 'Thhalv10014375m.g' => 'esa', 'Thhalv10021264m.g' => 'esa', 'Thhalv10028856m.g' => 'esa', 'TPR.G1914' => 'tpr', 'TPR.G4757' => 'tpr', 'TPR.G5595' => 'tpr', 'TWI14G0952' => 'twi', 'TWI14G1307' => 'twi', 'TWI38G2143' => 'twi', 'TWI59G0826' => 'twi', 'TWI77G0527' => 'twi', 'TWI81G0150' => 'twi', 'unitig_21.g21018' => 'ugi', 'unitig_26.g9725' => 'ugi', 'unitig_744.g24653' => 'ugi', 'unitig_749.g13778' => 'ugi', 'unitig_899.g15035' => 'ugi', 'vmacro04296' => 'vma', 'vmacro04852' => 'vma', 'vmacro13404' => 'vma', 'vmacro20169' => 'vma', 'vmacro21014' => 'vma', 'VMungo0331G0237' => 'vmu', 'VMungo0331G0706' => 'vmu', 'VMungo0331G1361' => 'vmu', 'VMungo0331G1489' => 'vmu', 'VMungo0540G1037' => 'vmu', 'VMungo0720G2487' => 'vmu', 'VMungo0720G2721' => 'vmu', 'Zm00001eb086860' => 'zma', 'Zm00001eb104760' => 'zma', 'Zm00001eb148220' => 'zma', 'Zm00001eb259030' => 'zma', 'Zm00001eb289590' => 'zma', 'Zm00001eb420150' => 'zma' ), 'gf_id' => 'HOM05D000968', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000968' ), 'data_identifier' => 'HOM05D000968', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000968', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p31690' => 'bna', 'A03p36040' => 'bna', 'A03p53730' => 'bna', 'A04p01410' => 'bna', 'A05p05420' => 'bna', 'A05p39630' => 'bna', 'A05p39640' => 'bna', 'A09p00970' => 'bna', 'A09p53060' => 'bna', 'A10p31890' => 'bna', 'Aa31LG10G15040' => 'aar', 'Aa31LG1G21090' => 'aar', 'Aa31LG1G26900' => 'aar', 'Aa31LG3G1820' => 'aar', 'Aa31LG5G1100' => 'aar', 'Aa31LG6G4740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2265' => 'aag', 'Actinidia07998' => 'ach', 'Actinidia11266' => 'ach', 'Actinidia12682' => 'ach', 'Actinidia26479' => 'ach', 'Actinidia31406' => 'ach', 'Actinidia32437' => 'ach', 'Actinidia38862' => 'ach', 'Ah.05g174230' => 'amhyb', 'Ah.05g179070' => 'amhyb', 'Ah.05g179090' => 'amhyb', 'Ah.12g059950' => 'amhyb', 'AL3G20480' => 'aly', 'AL4G44520' => 'aly', 'AL5G43110' => 'aly', 'AL6G13890' => 'aly', 'AL6G52620' => 'aly', 'AL7G30830' => 'aly', 'Aqoxy1G00899' => 'aox', 'Aqoxy5G04333' => 'aox', 'Aqoxy7G00641' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3IZ0NN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4EF6AW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W9P8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79GA3M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C43NQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFCU6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G95YVJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCHK29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LU1UG8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX91RN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGB4B1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8DA0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9H7JI' => 'arhy', 'AT3G09320' => 'ath', 'AT3G60800' => 'ath', 'AT4G00840' => 'ath', 'AT4G22750' => 'ath', 'AT5G04270' => 'ath', 'ATR0090G003' => 'atr', 'ATR0559G349' => 'atr', 'ATR0680G261' => 'atr', 'ATR0810G048' => 'atr', 'Atru.chr12.831' => 'acertr', 'Atru.chr5.303' => 'acertr', 'Atru.chr5.748' => 'acertr', 'Atru.chr8.1999' => 'acertr', 'Atru.chr9.1436' => 'acertr', 'AUR62004211' => 'cqu', 'AUR62004548' => 'cqu', 'AUR62013637' => 'cqu', 'AUR62022662' => 'cqu', 'AUR62025777' => 'cqu', 'AUR62042386' => 'cqu', 'BcaB01g02310' => 'bca', 'BcaB01g06062' => 'bca', 'BcaB02g08975' => 'bca', 'BcaB02g08980' => 'bca', 'BcaC01g04228' => 'bca', 'BcaC01g06830' => 'bca', 'BcaC02g10186' => 'bca', 'BcaC02g12214' => 'bca', 'BcaC04g24101' => 'bca', 'BcaC05g29520' => 'bca', 'BcaC05g29661' => 'bca', 'BcaC06g32130' => 'bca', 'BcaC06g32131' => 'bca', 'BcaC07g40601' => 'bca', 'BcaC07g42641' => 'bca', 'BcaNung01038' => 'bca', 'BcaNung01676' => 'bca', 'BcaNung02480' => 'bca', 'BcaNung07376' => 'bca', 'BolC3t16146H' => 'bol', 'BolC3t16637H' => 'bol', 'BolC4t22257H' => 'bol', 'BolC4t24728H' => 'bol', 'BolC5t34517H' => 'bol', 'BolC7t45703H' => 'bol', 'BolC8t51166H' => 'bol', 'BolC9t53038H' => 'bol', 'BolC9t60000H' => 'bol', 'BraA01t01345Z' => 'bra', 'BraA01t01346Z' => 'bra', 'BraA01t01348Z' => 'bra', 'BraA03t12347Z' => 'bra', 'BraA03t12775Z' => 'bra', 'BraA03t14439Z' => 'bra', 'BraA04t15860Z' => 'bra', 'BraA05t19511Z' => 'bra', 'BraA05t22746Z' => 'bra', 'BraA09t35767Z' => 'bra', 'BraA09t40732Z' => 'bra', 'BraA10t45233Z' => 'bra', 'C03p38720' => 'bna', 'C03p43680' => 'bna', 'C04p06350' => 'bna', 'C04p31800' => 'bna', 'C05p58680' => 'bna', 'C07p52110' => 'bna', 'C08p35760' => 'bna', 'C09p01050' => 'bna', 'C09p72600' => 'bna', 'CAN.G106.2' => 'can', 'CAN.G1482.1' => 'can', 'CAN.G324.12' => 'can', 'CAN.G388.20' => 'can', 'CAN.G412.7' => 'can', 'CAN.G694.32' => 'can', 'CAN.G92.12' => 'can', 'CANSAT11G2353' => 'cansat', 'CANSAT21G1398' => 'cansat', 'CANSAT56G2456' => 'cansat', 'CANSAT56G3031' => 'cansat', 'CANSAT56G4539' => 'cansat', 'CARHR083680' => 'chi', 'CARHR171190' => 'chi', 'CARHR209010' => 'chi', 'CARHR229680' => 'chi', 'CARHR249490' => 'chi', 'Carub.0003s0844' => 'cru', 'Carub.0005s2755' => 'cru', 'Carub.0006s0322' => 'cru', 'Carub.0006s3586' => 'cru', 'Carub.0007s1855' => 'cru', 'Ca_07808_v3' => 'car', 'Ca_09535_v3' => 'car', 'Ca_10548_v3' => 'car', 'Ca_19913_v3' => 'car', 'Ca_19916_v3' => 'car', 'Ca_19975_v3' => 'car', 'CBR_g22876' => 'cbr', 'CBR_g22879' => 'cbr', 'CBR_g38491' => 'cbr', 'CBR_g54185' => 'cbr', 'CBR_g54190' => 'cbr', 'Cc02_g11020' => 'ccan', 'Cc02_g23920' => 'ccan', 'Cc02_g39860' => 'ccan', 'Cc02_g39870' => 'ccan', 'Cc03_g06760' => 'ccan', 'Cc06_g02450' => 'ccan', 'Cc09_g09450' => 'ccan', 'CDE02G1959' => 'cde', 'CDE04G0600' => 'cde', 'CDE07G1996' => 'cde', 'CDE07G2078' => 'cde', 'CDE11G0611' => 'cde', 'Cfa001683' => 'cfa', 'Cfa001734' => 'cfa', 'Cfa001737' => 'cfa', 'Cfa003751' => 'cfa', 'Cfa012019' => 'cfa', 'Cfa017353' => 'cfa', 'Cfa017732' => 'cfa', 'Cfa022464' => 'cfa', 'Ciclev10012400m.g' => 'ccl', 'Ciclev10021242m.g' => 'ccl', 'Ciclev10021302m.g' => 'ccl', 'Ciclev10021463m.g' => 'ccl', 'Ciclev10032359m.g' => 'ccl', 'CiPaw.01G081000' => 'cil', 'CiPaw.01G262500' => 'cil', 'CiPaw.01G269800' => 'cil', 'CiPaw.02G168400' => 'cil', 'CiPaw.05G119500' => 'cil', 'CiPaw.11G147300' => 'cil', 'ClCG01G003630' => 'cla', 'ClCG05G000510' => 'cla', 'ClCG05G002300' => 'cla', 'ClCG08G007650' => 'cla', 'ClCG10G021250' => 'cla', 'COL.COLO4_06218' => 'col', 'COL.COLO4_12538' => 'col', 'COL.COLO4_14775' => 'col', 'COL.COLO4_23875' => 'col', 'Cpa.g.sc141.16' => 'cpa', 'Cpa.g.sc169.16' => 'cpa', 'Cpa.g.sc244.4' => 'cpa', 'Cpa.g.sc244.5' => 'cpa', 'Cpa.g.sc29.87' => 'cpa', 'Cpa.g.sc53.115' => 'cpa', 'Cre03.g207502' => 'cre', 'Cre06.g277000' => 'cre', 'Cre09.g394050' => 'cre', 'CsaV3_3G007680' => 'csa', 'CsaV3_3G009710' => 'csa', 'CsaV3_3G034790' => 'csa', 'CsaV3_5G003750' => 'csa', 'CsaV3_6G036620' => 'csa', 'CSS0002288' => 'camsi', 'CSS0011250' => 'camsi', 'CSS0021619' => 'camsi', 'CSS0046701' => 'camsi', 'DCAR_006420' => 'dca', 'DCAR_006865' => 'dca', 'DCAR_008558' => 'dca', 'DCAR_028754' => 'dca', 'DCAR_028755' => 'dca', 'Dinv31218' => 'din', 'Dinv32371' => 'din', 'Dinv34250' => 'din', 'Dinv37156' => 'din', 'Dinv43704' => 'din', 'Duzib093G1811' => 'dzi', 'Duzib106G1622' => 'dzi', 'Duzib114G0504' => 'dzi', 'Duzib128G0338' => 'dzi', 'Duzib128G1577' => 'dzi', 'Duzib133G0104' => 'dzi', 'Duzib133G1080' => 'dzi', 'Duzib138G0324' => 'dzi', 'Duzib138G0394' => 'dzi', 'Duzib205G0122' => 'dzi', 'Duzib268G1020' => 'dzi', 'Duzib268G1359' => 'dzi', 'ECA232G3929' => 'eca', 'ECA236G2210' => 'eca', 'ECA236G2287' => 'eca', 'ECA240G4568' => 'eca', 'ECA247G0894' => 'eca', 'EL10Ac1g00200' => 'bvu', 'EL10Ac1g00886' => 'bvu', 'EL10As1g23091' => 'bvu', 'EL10As1g23092' => 'bvu', 'Eucgr.A01284' => 'egr', 'Eucgr.A01285' => 'egr', 'Eucgr.D02456' => 'egr', 'Eucgr.E00018' => 'egr', 'Eucgr.E01439' => 'egr', 'Eucgr.G02859' => 'egr', 'FAN01G0168' => 'fan', 'FAN01G0453' => 'fan', 'FAN01G2761' => 'fan', 'FAN02G1239' => 'fan', 'FAN03G0645' => 'fan', 'FAN03G2707' => 'fan', 'FAN03G2978' => 'fan', 'FAN04G0227' => 'fan', 'FAN06G0091' => 'fan', 'FAN06G1418' => 'fan', 'FAN06G1512' => 'fan', 'FAN06G1986' => 'fan', 'FAN06G2905' => 'fan', 'FAN06G4325' => 'fan', 'FAN08G0033' => 'fan', 'FAN09G0642' => 'fan', 'FAN10G1763' => 'fan', 'FAN10G2026' => 'fan', 'FAN10G2513' => 'fan', 'FAN10G3402' => 'fan', 'FAN10G3564' => 'fan', 'FAN10G3987' => 'fan', 'FAN13G1490' => 'fan', 'FAN14G5857' => 'fan', 'FAN18G1188' => 'fan', 'FvH4_5g00750' => 'fve', 'FvH4_6g13410' => 'fve', 'FvH4_7g11740' => 'fve', 'FvH4_7g17410' => 'fve', 'FvH4_7g18860' => 'fve', 'Glyma.01G099100' => 'gma', 'Glyma.01G142300' => 'gma', 'Glyma.03G025500' => 'gma', 'Glyma.03G069700' => 'gma', 'Glyma.03G260000' => 'gma', 'Glyma.09G269800' => 'gma', 'Glyma.10G208700' => 'gma', 'Glyma.18G220400' => 'gma', 'Glyma.20G182000' => 'gma', 'Gohir.A01G221726' => 'ghi', 'Gohir.A07G134600' => 'ghi', 'Gohir.A07G146000' => 'ghi', 'Gohir.A08G173900' => 'ghi', 'Gohir.A09G194900' => 'ghi', 'Gohir.A10G204100' => 'ghi', 'Gohir.A11G080600' => 'ghi', 'Gohir.A11G327500' => 'ghi', 'Gohir.A12G101800' => 'ghi', 'Gohir.D01G211200' => 'ghi', 'Gohir.D07G139200' => 'ghi', 'Gohir.D07G152100' => 'ghi', 'Gohir.D08G192600' => 'ghi', 'Gohir.D09G189200' => 'ghi', 'Gohir.D10G212000' => 'ghi', 'Gohir.D11G085200' => 'ghi', 'Gohir.D11G346400' => 'ghi', 'Gohir.D12G104800' => 'ghi', 'Gorai.001G151300' => 'gra', 'Gorai.001G174100' => 'gra', 'Gorai.002G257000' => 'gra', 'Gorai.004G202600' => 'gra', 'Gorai.007G090900' => 'gra', 'Gorai.007G376700' => 'gra', 'Gorai.008G114100' => 'gra', 'Gorai.011G237900' => 'gra', 'GSVIVG01005450001' => 'vvi', 'GSVIVG01016232001' => 'vvi', 'GSVIVG01026157001' => 'vvi', 'GSVIVG01027419001' => 'vvi', 'GSVIVG01027631001' => 'vvi', 'GSVIVG01034143001' => 'vvi', 'HanXRQChr03g0093921' => 'han', 'HanXRQChr04g0120001' => 'han', 'HanXRQChr04g0122561' => 'han', 'HanXRQChr09g0246851' => 'han', 'HanXRQChr10g0293311' => 'han', 'HanXRQChr13g0425231' => 'han', 'HanXRQChr16g0532571' => 'han', 'Haze_09050' => 'cav', 'Haze_15715' => 'cav', 'Haze_15716' => 'cav', 'Haze_16803' => 'cav', 'Haze_16850' => 'cav', 'Hma1.2p1_0301F.1_g118655' => 'hma', 'Hma1.2p1_0309F.1_g120590' => 'hma', 'Hma1.2p1_0936F.1_g238900' => 'hma', 'Hma1.2p1_3552F.1_g336740' => 'hma', 'HPP92_003520' => 'vpl', 'HPP92_006628' => 'vpl', 'HPP92_006645' => 'vpl', 'HPP92_014669' => 'vpl', 'HPP92_015077' => 'vpl', 'Hund16742' => 'sun', 'Hund17022' => 'sun', 'Lalb_Chr02g0152131' => 'lal', 'Lalb_Chr05g0225371' => 'lal', 'Lalb_Chr07g0189841' => 'lal', 'Lalb_Chr07g0192961' => 'lal', 'Lalb_Chr12g0208221' => 'lal', 'Lalb_Chr13g0291211' => 'lal', 'Lalb_Chr13g0291781' => 'lal', 'Lalb_Chr18g0044651' => 'lal', 'Lalb_Chr21g0313731' => 'lal', 'Lj1g0022533' => 'lja', 'Lj2A18T50' => 'lonja', 'Lj2A92G93' => 'lonja', 'Lj3A965T73' => 'lonja', 'Lj3g0000673' => 'lja', 'Lj3g0002666' => 'lja', 'Lj4g0016985' => 'lja', 'Lj5g0003625' => 'lja', 'Lj7A529G36' => 'lonja', 'Lj9A569T49' => 'lonja', 'Lj9A604T63' => 'lonja', 'Lsat_1_v5_gn_3_132060' => 'lsa', 'Lsat_1_v5_gn_4_68941' => 'lsa', 'Lsat_1_v5_gn_5_95580' => 'lsa', 'Lsat_1_v5_gn_7_161' => 'lsa', 'Lsat_1_v5_gn_7_7041' => 'lsa', 'Lsat_1_v5_gn_9_33481' => 'lsa', 'Lsat_1_v5_gn_9_68260' => 'lsa', 'Manes.01G073100' => 'mes', 'Manes.01G266300' => 'mes', 'Manes.02G033300' => 'mes', 'Manes.05G017900' => 'mes', 'Manes.05G046100' => 'mes', 'Manes.08G080900' => 'mes', 'Manes.10G049400' => 'mes', 'Mapoly0009s0186' => 'mpo', 'Mapoly0036s0118' => 'mpo', 'Mapoly0101s0046' => 'mpo', 'MBI04_g30218_MAGBIO' => 'mbi', 'MBI04_g35564_MAGBIO' => 'mbi', 'MBI12_g34011_MAGBIO' => 'mbi', 'MBI14_g04655_MAGBIO' => 'mbi', 'MCO07G653' => 'mco', 'MCO10G173' => 'mco', 'MD01G1087100' => 'mdo', 'MD01G1104200' => 'mdo', 'MD02G1205100' => 'mdo', 'MD04G1079200' => 'mdo', 'MD04G1131400' => 'mdo', 'MD07G1121600' => 'mdo', 'MD07G1157300' => 'mdo', 'MD07G1171000' => 'mdo', 'MD12G1144500' => 'mdo', 'Medtr1g094610' => 'mtr', 'Medtr4g021795' => 'mtr', 'Medtr4g023760' => 'mtr', 'Medtr7g118050' => 'mtr', 'MELO3C005582.2' => 'cme', 'MELO3C005989.2' => 'cme', 'MELO3C006192.2' => 'cme', 'MELO3C009248.2' => 'cme', 'MELO3C019817.2' => 'cme', 'Migut.B01625' => 'egut', 'Migut.B01915' => 'egut', 'Migut.F01721' => 'egut', 'Migut.J00314' => 'egut', 'MSTRG.20742' => 'ama', 'MSTRG.8134' => 'ama', 'Nitab4.5_0000096g0010' => 'nta', 'Nitab4.5_0000202g0030' => 'nta', 'Nitab4.5_0000216g0370' => 'nta', 'Nitab4.5_0000457g0230' => 'nta', 'Nitab4.5_0001702g0170' => 'nta', 'Nitab4.5_0003607g0010' => 'nta', 'Nitab4.5_0004917g0020' => 'nta', 'Nitab4.5_0007059g0010' => 'nta', 'Nitab4.5_0007184g0010' => 'nta', 'Nitab4.5_0007346g0020' => 'nta', 'Nn1g00410' => 'nnu', 'Nn1g01252' => 'nnu', 'Nn2g11168' => 'nnu', 'Nn2g13403' => 'nnu', 'Nn2g13760' => 'nnu', 'Nn4g26380' => 'nnu', 'Oeu000806.2' => 'oeu', 'Oeu005788.1' => 'oeu', 'Oeu006900.3' => 'oeu', 'Oeu007797.1' => 'oeu', 'Oeu011932.1' => 'oeu', 'Oeu022739.1' => 'oeu', 'Oeu037918.1' => 'oeu', 'Oeu055490.2' => 'oeu', 'Os01g0844400' => 'osa', 'Os02g0819100' => 'osa', 'Os03g0804300' => 'osa', 'Os05g0458000' => 'osa', 'Os07g0467800' => 'osa', 'Os12g0602200' => 'osa', 'Peaxi162Scf00013g03444' => 'pax', 'Peaxi162Scf00094g01120' => 'pax', 'Peaxi162Scf00191g01211' => 'pax', 'Peaxi162Scf00238g01110' => 'pax', 'Peaxi162Scf00330g00719' => 'pax', 'Peaxi162Scf00627g00018' => 'pax', 'PGR031G2686' => 'pgr', 'PGR042G0809' => 'pgr', 'PGR142G0193' => 'pgr', 'PGSC0003DMG400011066' => 'stu', 'PGSC0003DMG400012041' => 'stu', 'PGSC0003DMG400013678' => 'stu', 'PGSC0003DMG400023477' => 'stu', 'PGSC0003DMG400025956' => 'stu', 'PGSC0003DMG401019151' => 'stu', 'Phvul.006G116400' => 'pvu', 'Phvul.007G097300' => 'pvu', 'Phvul.010G015000' => 'pvu', 'Phvul.010G083900' => 'pvu', 'Potri.001G117100' => 'ptr', 'Potri.002G147300' => 'ptr', 'Potri.003G115600' => 'ptr', 'Potri.006G087400' => 'ptr', 'Potri.010G226100' => 'ptr', 'Potri.014G069200' => 'ptr', 'Potri.014G104000' => 'ptr', 'Potri.016G100200' => 'ptr', 'Pp3c10_20450' => 'ppa', 'Pp3c1_42400' => 'ppa', 'Pp3c3_24390' => 'ppa', 'Pp3c3_2860' => 'ppa', 'PRCOL_00003193' => 'pco', 'Prupe.2G144500' => 'ppe', 'Prupe.2G195700' => 'ppe', 'Prupe.2G209800' => 'ppe', 'Prupe.5G080000' => 'ppe', 'Prupe.6G257900' => 'ppe', 'Psat3g001160' => 'psa', 'Psat6g181880' => 'psa', 'Psat7g233720' => 'psa', 'PSO063G7587' => 'pso', 'PSO339G2145' => 'pso', 'PSO339G3369' => 'pso', 'PSO478G2747' => 'pso', 'PSO513G0140' => 'pso', 'PSO782G1614' => 'pso', 'PSO782G4889' => 'pso', 'PSO782G5485' => 'pso', 'PSO801G0241' => 'pso', 'QL07p048854' => 'qlo', 'QL08p046745' => 'qlo', 'QL08p052606' => 'qlo', 'QL08p053414' => 'qlo', 'QL08p054868' => 'qlo', 'RcHm_v2.0_Chr1g0350251' => 'rch', 'RcHm_v2.0_Chr1g0360851' => 'rch', 'RcHm_v2.0_Chr1g0362791' => 'rch', 'RcHm_v2.0_Chr3g0466281' => 'rch', 'RcHm_v2.0_Chr7g0201481' => 'rch', 'Rhsim01G0148600' => 'rsi', 'Rhsim05G0194400' => 'rsi', 'Rhsim07G0000700' => 'rsi', 'Rhsim07G0000800' => 'rsi', 'Rhsim07G0027900' => 'rsi', 'Rhsim09G0149500' => 'rsi', 'RhsimUnG0186900' => 'rsi', 'Sabra01G0089900' => 'sbr', 'Sabra02G0114700' => 'sbr', 'Sabra02G0116300' => 'sbr', 'Sabra03G0080100' => 'sbr', 'Sabra08G0024300' => 'sbr', 'Sabra10G0174300' => 'sbr', 'Sabra14G0048900' => 'sbr', 'Sabra14G0076500' => 'sbr', 'SalBow5G2513' => 'sbo', 'Sc01g0002300' => 'sci', 'Sc01g0004450' => 'sci', 'Sc06g0001680' => 'sci', 'Sc23g0003580' => 'sci', 'Sed0000913' => 'sed', 'Sed0001655' => 'sed', 'Sed0007745' => 'sed', 'Sed0010951' => 'sed', 'Sed0017599' => 'sed', 'Sed0021405' => 'sed', 'Sed0022810' => 'sed', 'SEGI_07099' => 'sgi', 'SEGI_11931' => 'sgi', 'SEGI_13187' => 'sgi', 'SEGI_29958' => 'sgi', 'SEGI_36351' => 'sgi', 'SGA_v2.0_scaffold126G33770' => 'sas', 'SGA_v2.0_scaffold153G37003' => 'sas', 'SGA_v2.0_scaffold2G01359' => 'sas', 'SGA_v2.0_scaffold5G03064' => 'sas', 'SGA_v2.0_scaffold95G28903' => 'sas', 'SHI12701' => 'shi', 'SHI26410' => 'shi', 'SHI38997' => 'shi', 'SHI53759' => 'shi', 'SHI53886' => 'shi', 'SHI54714' => 'shi', 'SMO011G0041' => 'smo', 'SMO146G0251' => 'smo', 'SMO160G0004' => 'smo', 'SMO174G0057' => 'smo', 'SMO244G0089' => 'smo', 'SMO296G0011' => 'smo', 'Solyc01g091280.3' => 'sly', 'Solyc05g047610.3' => 'sly', 'Solyc05g047640.3' => 'sly', 'Solyc05g055630.3' => 'sly', 'Solyc10g018160.2' => 'sly', 'Solyc10g084820.2' => 'sly', 'Solyc10g086565.2' => 'sly', 'Sopen01g037030' => 'spe', 'Sopen05g027920' => 'spe', 'Sopen05g034070' => 'spe', 'Sopen10g007260' => 'spe', 'Sopen10g034260' => 'spe', 'Sopen10g035950' => 'spe', 'Sp3g07710' => 'spa', 'Sp4g27420' => 'spa', 'Sp5g02450' => 'spa', 'Sp6g01280' => 'spa', 'Sp6g38480' => 'spa', 'Sp7g20780' => 'spa', 'TAR374G1413' => 'tar', 'TAR623G1777' => 'tar', 'TAR629G2370' => 'tar', 'TAR633G1759' => 'tar', 'TAR636G3387' => 'tar', 'THA.LOC104802447' => 'tha', 'THA.LOC104813916' => 'tha', 'THA.LOC104816423' => 'tha', 'THA.LOC104817246' => 'tha', 'THA.LOC104825895' => 'tha', 'Thecc.01G335200' => 'tca', 'Thecc.01G377400' => 'tca', 'Thecc.03G262200' => 'tca', 'Thecc.05G036800' => 'tca', 'Thecc.10G080500' => 'tca', 'Thecc.10G080800' => 'tca', 'Thhalv10001560m.g' => 'esa', 'Thhalv10006120m.g' => 'esa', 'Thhalv10014375m.g' => 'esa', 'Thhalv10021264m.g' => 'esa', 'Thhalv10028856m.g' => 'esa', 'TPR.G1914' => 'tpr', 'TPR.G4757' => 'tpr', 'TPR.G5595' => 'tpr', 'TWI14G0952' => 'twi', 'TWI14G1307' => 'twi', 'TWI38G2143' => 'twi', 'TWI59G0826' => 'twi', 'TWI77G0527' => 'twi', 'TWI81G0150' => 'twi', 'unitig_21.g21018' => 'ugi', 'unitig_26.g9725' => 'ugi', 'unitig_744.g24653' => 'ugi', 'unitig_749.g13778' => 'ugi', 'unitig_899.g15035' => 'ugi', 'vmacro04296' => 'vma', 'vmacro04852' => 'vma', 'vmacro13404' => 'vma', 'vmacro20169' => 'vma', 'vmacro21014' => 'vma', 'VMungo0331G0237' => 'vmu', 'VMungo0331G0706' => 'vmu', 'VMungo0331G1361' => 'vmu', 'VMungo0331G1489' => 'vmu', 'VMungo0540G1037' => 'vmu', 'VMungo0720G2487' => 'vmu', 'VMungo0720G2721' => 'vmu', 'Zm00001eb086860' => 'zma', 'Zm00001eb104760' => 'zma', 'Zm00001eb148220' => 'zma', 'Zm00001eb259030' => 'zma', 'Zm00001eb289590' => 'zma', 'Zm00001eb420150' => 'zma' ) $gf_id = 'HOM05D000968' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000968' ) $data_identifier = 'HOM05D000968' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 19, 'bol' => (int) 9, 'bra' => (int) 12, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 5, 'ccan' => (int) 7, 'cde' => (int) 5, 'cfa' => (int) 8, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 4, 'dca' => (int) 5, 'din' => (int) 5, 'dzi' => (int) 12, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 25, 'fve' => (int) 5, 'gma' => (int) 9, 'ghi' => (int) 18, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 7, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 5, 'sun' => (int) 2, 'lal' => (int) 9, 'lja' => (int) 5, 'lonja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 9, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 2, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 3, 'stu' => (int) 6, 'pvu' => (int) 4, 'ptr' => (int) 8, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 3, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 1, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 5, 'sas' => (int) 5, 'shi' => (int) 6, 'smo' => (int) 6, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 3, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420150' $species_info = array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ) $local_species = 'sbr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000968', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p31690' => 'bna', 'A03p36040' => 'bna', 'A03p53730' => 'bna', 'A04p01410' => 'bna', 'A05p05420' => 'bna', 'A05p39630' => 'bna', 'A05p39640' => 'bna', 'A09p00970' => 'bna', 'A09p53060' => 'bna', 'A10p31890' => 'bna', 'Aa31LG10G15040' => 'aar', 'Aa31LG1G21090' => 'aar', 'Aa31LG1G26900' => 'aar', 'Aa31LG3G1820' => 'aar', 'Aa31LG5G1100' => 'aar', 'Aa31LG6G4740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2265' => 'aag', 'Actinidia07998' => 'ach', 'Actinidia11266' => 'ach', 'Actinidia12682' => 'ach', 'Actinidia26479' => 'ach', 'Actinidia31406' => 'ach', 'Actinidia32437' => 'ach', 'Actinidia38862' => 'ach', 'Ah.05g174230' => 'amhyb', 'Ah.05g179070' => 'amhyb', 'Ah.05g179090' => 'amhyb', 'Ah.12g059950' => 'amhyb', 'AL3G20480' => 'aly', 'AL4G44520' => 'aly', 'AL5G43110' => 'aly', 'AL6G13890' => 'aly', 'AL6G52620' => 'aly', 'AL7G30830' => 'aly', 'Aqoxy1G00899' => 'aox', 'Aqoxy5G04333' => 'aox', 'Aqoxy7G00641' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3IZ0NN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4EF6AW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W9P8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79GA3M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C43NQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFCU6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G95YVJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCHK29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LU1UG8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX91RN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGB4B1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8DA0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9H7JI' => 'arhy', 'AT3G09320' => 'ath', 'AT3G60800' => 'ath', 'AT4G00840' => 'ath', 'AT4G22750' => 'ath', 'AT5G04270' => 'ath', 'ATR0090G003' => 'atr', 'ATR0559G349' => 'atr', 'ATR0680G261' => 'atr', 'ATR0810G048' => 'atr', 'Atru.chr12.831' => 'acertr', 'Atru.chr5.303' => 'acertr', 'Atru.chr5.748' => 'acertr', 'Atru.chr8.1999' => 'acertr', 'Atru.chr9.1436' => 'acertr', 'AUR62004211' => 'cqu', 'AUR62004548' => 'cqu', 'AUR62013637' => 'cqu', 'AUR62022662' => 'cqu', 'AUR62025777' => 'cqu', 'AUR62042386' => 'cqu', 'BcaB01g02310' => 'bca', 'BcaB01g06062' => 'bca', 'BcaB02g08975' => 'bca', 'BcaB02g08980' => 'bca', 'BcaC01g04228' => 'bca', 'BcaC01g06830' => 'bca', 'BcaC02g10186' => 'bca', 'BcaC02g12214' => 'bca', 'BcaC04g24101' => 'bca', 'BcaC05g29520' => 'bca', 'BcaC05g29661' => 'bca', 'BcaC06g32130' => 'bca', 'BcaC06g32131' => 'bca', 'BcaC07g40601' => 'bca', 'BcaC07g42641' => 'bca', 'BcaNung01038' => 'bca', 'BcaNung01676' => 'bca', 'BcaNung02480' => 'bca', 'BcaNung07376' => 'bca', 'BolC3t16146H' => 'bol', 'BolC3t16637H' => 'bol', 'BolC4t22257H' => 'bol', 'BolC4t24728H' => 'bol', 'BolC5t34517H' => 'bol', 'BolC7t45703H' => 'bol', 'BolC8t51166H' => 'bol', 'BolC9t53038H' => 'bol', 'BolC9t60000H' => 'bol', 'BraA01t01345Z' => 'bra', 'BraA01t01346Z' => 'bra', 'BraA01t01348Z' => 'bra', 'BraA03t12347Z' => 'bra', 'BraA03t12775Z' => 'bra', 'BraA03t14439Z' => 'bra', 'BraA04t15860Z' => 'bra', 'BraA05t19511Z' => 'bra', 'BraA05t22746Z' => 'bra', 'BraA09t35767Z' => 'bra', 'BraA09t40732Z' => 'bra', 'BraA10t45233Z' => 'bra', 'C03p38720' => 'bna', 'C03p43680' => 'bna', 'C04p06350' => 'bna', 'C04p31800' => 'bna', 'C05p58680' => 'bna', 'C07p52110' => 'bna', 'C08p35760' => 'bna', 'C09p01050' => 'bna', 'C09p72600' => 'bna', 'CAN.G106.2' => 'can', 'CAN.G1482.1' => 'can', 'CAN.G324.12' => 'can', 'CAN.G388.20' => 'can', 'CAN.G412.7' => 'can', 'CAN.G694.32' => 'can', 'CAN.G92.12' => 'can', 'CANSAT11G2353' => 'cansat', 'CANSAT21G1398' => 'cansat', 'CANSAT56G2456' => 'cansat', 'CANSAT56G3031' => 'cansat', 'CANSAT56G4539' => 'cansat', 'CARHR083680' => 'chi', 'CARHR171190' => 'chi', 'CARHR209010' => 'chi', 'CARHR229680' => 'chi', 'CARHR249490' => 'chi', 'Carub.0003s0844' => 'cru', 'Carub.0005s2755' => 'cru', 'Carub.0006s0322' => 'cru', 'Carub.0006s3586' => 'cru', 'Carub.0007s1855' => 'cru', 'Ca_07808_v3' => 'car', 'Ca_09535_v3' => 'car', 'Ca_10548_v3' => 'car', 'Ca_19913_v3' => 'car', 'Ca_19916_v3' => 'car', 'Ca_19975_v3' => 'car', 'CBR_g22876' => 'cbr', 'CBR_g22879' => 'cbr', 'CBR_g38491' => 'cbr', 'CBR_g54185' => 'cbr', 'CBR_g54190' => 'cbr', 'Cc02_g11020' => 'ccan', 'Cc02_g23920' => 'ccan', 'Cc02_g39860' => 'ccan', 'Cc02_g39870' => 'ccan', 'Cc03_g06760' => 'ccan', 'Cc06_g02450' => 'ccan', 'Cc09_g09450' => 'ccan', 'CDE02G1959' => 'cde', 'CDE04G0600' => 'cde', 'CDE07G1996' => 'cde', 'CDE07G2078' => 'cde', 'CDE11G0611' => 'cde', 'Cfa001683' => 'cfa', 'Cfa001734' => 'cfa', 'Cfa001737' => 'cfa', 'Cfa003751' => 'cfa', 'Cfa012019' => 'cfa', 'Cfa017353' => 'cfa', 'Cfa017732' => 'cfa', 'Cfa022464' => 'cfa', 'Ciclev10012400m.g' => 'ccl', 'Ciclev10021242m.g' => 'ccl', 'Ciclev10021302m.g' => 'ccl', 'Ciclev10021463m.g' => 'ccl', 'Ciclev10032359m.g' => 'ccl', 'CiPaw.01G081000' => 'cil', 'CiPaw.01G262500' => 'cil', 'CiPaw.01G269800' => 'cil', 'CiPaw.02G168400' => 'cil', 'CiPaw.05G119500' => 'cil', 'CiPaw.11G147300' => 'cil', 'ClCG01G003630' => 'cla', 'ClCG05G000510' => 'cla', 'ClCG05G002300' => 'cla', 'ClCG08G007650' => 'cla', 'ClCG10G021250' => 'cla', 'COL.COLO4_06218' => 'col', 'COL.COLO4_12538' => 'col', 'COL.COLO4_14775' => 'col', 'COL.COLO4_23875' => 'col', 'Cpa.g.sc141.16' => 'cpa', 'Cpa.g.sc169.16' => 'cpa', 'Cpa.g.sc244.4' => 'cpa', 'Cpa.g.sc244.5' => 'cpa', 'Cpa.g.sc29.87' => 'cpa', 'Cpa.g.sc53.115' => 'cpa', 'Cre03.g207502' => 'cre', 'Cre06.g277000' => 'cre', 'Cre09.g394050' => 'cre', 'CsaV3_3G007680' => 'csa', 'CsaV3_3G009710' => 'csa', 'CsaV3_3G034790' => 'csa', 'CsaV3_5G003750' => 'csa', 'CsaV3_6G036620' => 'csa', 'CSS0002288' => 'camsi', 'CSS0011250' => 'camsi', 'CSS0021619' => 'camsi', 'CSS0046701' => 'camsi', 'DCAR_006420' => 'dca', 'DCAR_006865' => 'dca', 'DCAR_008558' => 'dca', 'DCAR_028754' => 'dca', 'DCAR_028755' => 'dca', 'Dinv31218' => 'din', 'Dinv32371' => 'din', 'Dinv34250' => 'din', 'Dinv37156' => 'din', 'Dinv43704' => 'din', 'Duzib093G1811' => 'dzi', 'Duzib106G1622' => 'dzi', 'Duzib114G0504' => 'dzi', 'Duzib128G0338' => 'dzi', 'Duzib128G1577' => 'dzi', 'Duzib133G0104' => 'dzi', 'Duzib133G1080' => 'dzi', 'Duzib138G0324' => 'dzi', 'Duzib138G0394' => 'dzi', 'Duzib205G0122' => 'dzi', 'Duzib268G1020' => 'dzi', 'Duzib268G1359' => 'dzi', 'ECA232G3929' => 'eca', 'ECA236G2210' => 'eca', 'ECA236G2287' => 'eca', 'ECA240G4568' => 'eca', 'ECA247G0894' => 'eca', 'EL10Ac1g00200' => 'bvu', 'EL10Ac1g00886' => 'bvu', 'EL10As1g23091' => 'bvu', 'EL10As1g23092' => 'bvu', 'Eucgr.A01284' => 'egr', 'Eucgr.A01285' => 'egr', 'Eucgr.D02456' => 'egr', 'Eucgr.E00018' => 'egr', 'Eucgr.E01439' => 'egr', 'Eucgr.G02859' => 'egr', 'FAN01G0168' => 'fan', 'FAN01G0453' => 'fan', 'FAN01G2761' => 'fan', 'FAN02G1239' => 'fan', 'FAN03G0645' => 'fan', 'FAN03G2707' => 'fan', 'FAN03G2978' => 'fan', 'FAN04G0227' => 'fan', 'FAN06G0091' => 'fan', 'FAN06G1418' => 'fan', 'FAN06G1512' => 'fan', 'FAN06G1986' => 'fan', 'FAN06G2905' => 'fan', 'FAN06G4325' => 'fan', 'FAN08G0033' => 'fan', 'FAN09G0642' => 'fan', 'FAN10G1763' => 'fan', 'FAN10G2026' => 'fan', 'FAN10G2513' => 'fan', 'FAN10G3402' => 'fan', 'FAN10G3564' => 'fan', 'FAN10G3987' => 'fan', 'FAN13G1490' => 'fan', 'FAN14G5857' => 'fan', 'FAN18G1188' => 'fan', 'FvH4_5g00750' => 'fve', 'FvH4_6g13410' => 'fve', 'FvH4_7g11740' => 'fve', 'FvH4_7g17410' => 'fve', 'FvH4_7g18860' => 'fve', 'Glyma.01G099100' => 'gma', 'Glyma.01G142300' => 'gma', 'Glyma.03G025500' => 'gma', 'Glyma.03G069700' => 'gma', 'Glyma.03G260000' => 'gma', 'Glyma.09G269800' => 'gma', 'Glyma.10G208700' => 'gma', 'Glyma.18G220400' => 'gma', 'Glyma.20G182000' => 'gma', 'Gohir.A01G221726' => 'ghi', 'Gohir.A07G134600' => 'ghi', 'Gohir.A07G146000' => 'ghi', 'Gohir.A08G173900' => 'ghi', 'Gohir.A09G194900' => 'ghi', 'Gohir.A10G204100' => 'ghi', 'Gohir.A11G080600' => 'ghi', 'Gohir.A11G327500' => 'ghi', 'Gohir.A12G101800' => 'ghi', 'Gohir.D01G211200' => 'ghi', 'Gohir.D07G139200' => 'ghi', 'Gohir.D07G152100' => 'ghi', 'Gohir.D08G192600' => 'ghi', 'Gohir.D09G189200' => 'ghi', 'Gohir.D10G212000' => 'ghi', 'Gohir.D11G085200' => 'ghi', 'Gohir.D11G346400' => 'ghi', 'Gohir.D12G104800' => 'ghi', 'Gorai.001G151300' => 'gra', 'Gorai.001G174100' => 'gra', 'Gorai.002G257000' => 'gra', 'Gorai.004G202600' => 'gra', 'Gorai.007G090900' => 'gra', 'Gorai.007G376700' => 'gra', 'Gorai.008G114100' => 'gra', 'Gorai.011G237900' => 'gra', 'GSVIVG01005450001' => 'vvi', 'GSVIVG01016232001' => 'vvi', 'GSVIVG01026157001' => 'vvi', 'GSVIVG01027419001' => 'vvi', 'GSVIVG01027631001' => 'vvi', 'GSVIVG01034143001' => 'vvi', 'HanXRQChr03g0093921' => 'han', 'HanXRQChr04g0120001' => 'han', 'HanXRQChr04g0122561' => 'han', 'HanXRQChr09g0246851' => 'han', 'HanXRQChr10g0293311' => 'han', 'HanXRQChr13g0425231' => 'han', 'HanXRQChr16g0532571' => 'han', 'Haze_09050' => 'cav', 'Haze_15715' => 'cav', 'Haze_15716' => 'cav', 'Haze_16803' => 'cav', 'Haze_16850' => 'cav', 'Hma1.2p1_0301F.1_g118655' => 'hma', 'Hma1.2p1_0309F.1_g120590' => 'hma', 'Hma1.2p1_0936F.1_g238900' => 'hma', 'Hma1.2p1_3552F.1_g336740' => 'hma', 'HPP92_003520' => 'vpl', 'HPP92_006628' => 'vpl', 'HPP92_006645' => 'vpl', 'HPP92_014669' => 'vpl', 'HPP92_015077' => 'vpl', 'Hund16742' => 'sun', 'Hund17022' => 'sun', 'Lalb_Chr02g0152131' => 'lal', 'Lalb_Chr05g0225371' => 'lal', 'Lalb_Chr07g0189841' => 'lal', 'Lalb_Chr07g0192961' => 'lal', 'Lalb_Chr12g0208221' => 'lal', 'Lalb_Chr13g0291211' => 'lal', 'Lalb_Chr13g0291781' => 'lal', 'Lalb_Chr18g0044651' => 'lal', 'Lalb_Chr21g0313731' => 'lal', 'Lj1g0022533' => 'lja', 'Lj2A18T50' => 'lonja', 'Lj2A92G93' => 'lonja', 'Lj3A965T73' => 'lonja', 'Lj3g0000673' => 'lja', 'Lj3g0002666' => 'lja', 'Lj4g0016985' => 'lja', 'Lj5g0003625' => 'lja', 'Lj7A529G36' => 'lonja', 'Lj9A569T49' => 'lonja', 'Lj9A604T63' => 'lonja', 'Lsat_1_v5_gn_3_132060' => 'lsa', 'Lsat_1_v5_gn_4_68941' => 'lsa', 'Lsat_1_v5_gn_5_95580' => 'lsa', 'Lsat_1_v5_gn_7_161' => 'lsa', 'Lsat_1_v5_gn_7_7041' => 'lsa', 'Lsat_1_v5_gn_9_33481' => 'lsa', 'Lsat_1_v5_gn_9_68260' => 'lsa', 'Manes.01G073100' => 'mes', 'Manes.01G266300' => 'mes', 'Manes.02G033300' => 'mes', 'Manes.05G017900' => 'mes', 'Manes.05G046100' => 'mes', 'Manes.08G080900' => 'mes', 'Manes.10G049400' => 'mes', 'Mapoly0009s0186' => 'mpo', 'Mapoly0036s0118' => 'mpo', 'Mapoly0101s0046' => 'mpo', 'MBI04_g30218_MAGBIO' => 'mbi', 'MBI04_g35564_MAGBIO' => 'mbi', 'MBI12_g34011_MAGBIO' => 'mbi', 'MBI14_g04655_MAGBIO' => 'mbi', 'MCO07G653' => 'mco', 'MCO10G173' => 'mco', 'MD01G1087100' => 'mdo', 'MD01G1104200' => 'mdo', 'MD02G1205100' => 'mdo', 'MD04G1079200' => 'mdo', 'MD04G1131400' => 'mdo', 'MD07G1121600' => 'mdo', 'MD07G1157300' => 'mdo', 'MD07G1171000' => 'mdo', 'MD12G1144500' => 'mdo', 'Medtr1g094610' => 'mtr', 'Medtr4g021795' => 'mtr', 'Medtr4g023760' => 'mtr', 'Medtr7g118050' => 'mtr', 'MELO3C005582.2' => 'cme', 'MELO3C005989.2' => 'cme', 'MELO3C006192.2' => 'cme', 'MELO3C009248.2' => 'cme', 'MELO3C019817.2' => 'cme', 'Migut.B01625' => 'egut', 'Migut.B01915' => 'egut', 'Migut.F01721' => 'egut', 'Migut.J00314' => 'egut', 'MSTRG.20742' => 'ama', 'MSTRG.8134' => 'ama', 'Nitab4.5_0000096g0010' => 'nta', 'Nitab4.5_0000202g0030' => 'nta', 'Nitab4.5_0000216g0370' => 'nta', 'Nitab4.5_0000457g0230' => 'nta', 'Nitab4.5_0001702g0170' => 'nta', 'Nitab4.5_0003607g0010' => 'nta', 'Nitab4.5_0004917g0020' => 'nta', 'Nitab4.5_0007059g0010' => 'nta', 'Nitab4.5_0007184g0010' => 'nta', 'Nitab4.5_0007346g0020' => 'nta', 'Nn1g00410' => 'nnu', 'Nn1g01252' => 'nnu', 'Nn2g11168' => 'nnu', 'Nn2g13403' => 'nnu', 'Nn2g13760' => 'nnu', 'Nn4g26380' => 'nnu', 'Oeu000806.2' => 'oeu', 'Oeu005788.1' => 'oeu', 'Oeu006900.3' => 'oeu', 'Oeu007797.1' => 'oeu', 'Oeu011932.1' => 'oeu', 'Oeu022739.1' => 'oeu', 'Oeu037918.1' => 'oeu', 'Oeu055490.2' => 'oeu', 'Os01g0844400' => 'osa', 'Os02g0819100' => 'osa', 'Os03g0804300' => 'osa', 'Os05g0458000' => 'osa', 'Os07g0467800' => 'osa', 'Os12g0602200' => 'osa', 'Peaxi162Scf00013g03444' => 'pax', 'Peaxi162Scf00094g01120' => 'pax', 'Peaxi162Scf00191g01211' => 'pax', 'Peaxi162Scf00238g01110' => 'pax', 'Peaxi162Scf00330g00719' => 'pax', 'Peaxi162Scf00627g00018' => 'pax', 'PGR031G2686' => 'pgr', 'PGR042G0809' => 'pgr', 'PGR142G0193' => 'pgr', 'PGSC0003DMG400011066' => 'stu', 'PGSC0003DMG400012041' => 'stu', 'PGSC0003DMG400013678' => 'stu', 'PGSC0003DMG400023477' => 'stu', 'PGSC0003DMG400025956' => 'stu', 'PGSC0003DMG401019151' => 'stu', 'Phvul.006G116400' => 'pvu', 'Phvul.007G097300' => 'pvu', 'Phvul.010G015000' => 'pvu', 'Phvul.010G083900' => 'pvu', 'Potri.001G117100' => 'ptr', 'Potri.002G147300' => 'ptr', 'Potri.003G115600' => 'ptr', 'Potri.006G087400' => 'ptr', 'Potri.010G226100' => 'ptr', 'Potri.014G069200' => 'ptr', 'Potri.014G104000' => 'ptr', 'Potri.016G100200' => 'ptr', 'Pp3c10_20450' => 'ppa', 'Pp3c1_42400' => 'ppa', 'Pp3c3_24390' => 'ppa', 'Pp3c3_2860' => 'ppa', 'PRCOL_00003193' => 'pco', 'Prupe.2G144500' => 'ppe', 'Prupe.2G195700' => 'ppe', 'Prupe.2G209800' => 'ppe', 'Prupe.5G080000' => 'ppe', 'Prupe.6G257900' => 'ppe', 'Psat3g001160' => 'psa', 'Psat6g181880' => 'psa', 'Psat7g233720' => 'psa', 'PSO063G7587' => 'pso', 'PSO339G2145' => 'pso', 'PSO339G3369' => 'pso', 'PSO478G2747' => 'pso', 'PSO513G0140' => 'pso', 'PSO782G1614' => 'pso', 'PSO782G4889' => 'pso', 'PSO782G5485' => 'pso', 'PSO801G0241' => 'pso', 'QL07p048854' => 'qlo', 'QL08p046745' => 'qlo', 'QL08p052606' => 'qlo', 'QL08p053414' => 'qlo', 'QL08p054868' => 'qlo', 'RcHm_v2.0_Chr1g0350251' => 'rch', 'RcHm_v2.0_Chr1g0360851' => 'rch', 'RcHm_v2.0_Chr1g0362791' => 'rch', 'RcHm_v2.0_Chr3g0466281' => 'rch', 'RcHm_v2.0_Chr7g0201481' => 'rch', 'Rhsim01G0148600' => 'rsi', 'Rhsim05G0194400' => 'rsi', 'Rhsim07G0000700' => 'rsi', 'Rhsim07G0000800' => 'rsi', 'Rhsim07G0027900' => 'rsi', 'Rhsim09G0149500' => 'rsi', 'RhsimUnG0186900' => 'rsi', 'Sabra01G0089900' => 'sbr', 'Sabra02G0114700' => 'sbr', 'Sabra02G0116300' => 'sbr', 'Sabra03G0080100' => 'sbr', 'Sabra08G0024300' => 'sbr', 'Sabra10G0174300' => 'sbr', 'Sabra14G0048900' => 'sbr', 'Sabra14G0076500' => 'sbr', 'SalBow5G2513' => 'sbo', 'Sc01g0002300' => 'sci', 'Sc01g0004450' => 'sci', 'Sc06g0001680' => 'sci', 'Sc23g0003580' => 'sci', 'Sed0000913' => 'sed', 'Sed0001655' => 'sed', 'Sed0007745' => 'sed', 'Sed0010951' => 'sed', 'Sed0017599' => 'sed', 'Sed0021405' => 'sed', 'Sed0022810' => 'sed', 'SEGI_07099' => 'sgi', 'SEGI_11931' => 'sgi', 'SEGI_13187' => 'sgi', 'SEGI_29958' => 'sgi', 'SEGI_36351' => 'sgi', 'SGA_v2.0_scaffold126G33770' => 'sas', 'SGA_v2.0_scaffold153G37003' => 'sas', 'SGA_v2.0_scaffold2G01359' => 'sas', 'SGA_v2.0_scaffold5G03064' => 'sas', 'SGA_v2.0_scaffold95G28903' => 'sas', 'SHI12701' => 'shi', 'SHI26410' => 'shi', 'SHI38997' => 'shi', 'SHI53759' => 'shi', 'SHI53886' => 'shi', 'SHI54714' => 'shi', 'SMO011G0041' => 'smo', 'SMO146G0251' => 'smo', 'SMO160G0004' => 'smo', 'SMO174G0057' => 'smo', 'SMO244G0089' => 'smo', 'SMO296G0011' => 'smo', 'Solyc01g091280.3' => 'sly', 'Solyc05g047610.3' => 'sly', 'Solyc05g047640.3' => 'sly', 'Solyc05g055630.3' => 'sly', 'Solyc10g018160.2' => 'sly', 'Solyc10g084820.2' => 'sly', 'Solyc10g086565.2' => 'sly', 'Sopen01g037030' => 'spe', 'Sopen05g027920' => 'spe', 'Sopen05g034070' => 'spe', 'Sopen10g007260' => 'spe', 'Sopen10g034260' => 'spe', 'Sopen10g035950' => 'spe', 'Sp3g07710' => 'spa', 'Sp4g27420' => 'spa', 'Sp5g02450' => 'spa', 'Sp6g01280' => 'spa', 'Sp6g38480' => 'spa', 'Sp7g20780' => 'spa', 'TAR374G1413' => 'tar', 'TAR623G1777' => 'tar', 'TAR629G2370' => 'tar', 'TAR633G1759' => 'tar', 'TAR636G3387' => 'tar', 'THA.LOC104802447' => 'tha', 'THA.LOC104813916' => 'tha', 'THA.LOC104816423' => 'tha', 'THA.LOC104817246' => 'tha', 'THA.LOC104825895' => 'tha', 'Thecc.01G335200' => 'tca', 'Thecc.01G377400' => 'tca', 'Thecc.03G262200' => 'tca', 'Thecc.05G036800' => 'tca', 'Thecc.10G080500' => 'tca', 'Thecc.10G080800' => 'tca', 'Thhalv10001560m.g' => 'esa', 'Thhalv10006120m.g' => 'esa', 'Thhalv10014375m.g' => 'esa', 'Thhalv10021264m.g' => 'esa', 'Thhalv10028856m.g' => 'esa', 'TPR.G1914' => 'tpr', 'TPR.G4757' => 'tpr', 'TPR.G5595' => 'tpr', 'TWI14G0952' => 'twi', 'TWI14G1307' => 'twi', 'TWI38G2143' => 'twi', 'TWI59G0826' => 'twi', 'TWI77G0527' => 'twi', 'TWI81G0150' => 'twi', 'unitig_21.g21018' => 'ugi', 'unitig_26.g9725' => 'ugi', 'unitig_744.g24653' => 'ugi', 'unitig_749.g13778' => 'ugi', 'unitig_899.g15035' => 'ugi', 'vmacro04296' => 'vma', 'vmacro04852' => 'vma', 'vmacro13404' => 'vma', 'vmacro20169' => 'vma', 'vmacro21014' => 'vma', 'VMungo0331G0237' => 'vmu', 'VMungo0331G0706' => 'vmu', 'VMungo0331G1361' => 'vmu', 'VMungo0331G1489' => 'vmu', 'VMungo0540G1037' => 'vmu', 'VMungo0720G2487' => 'vmu', 'VMungo0720G2721' => 'vmu', 'Zm00001eb086860' => 'zma', 'Zm00001eb104760' => 'zma', 'Zm00001eb148220' => 'zma', 'Zm00001eb259030' => 'zma', 'Zm00001eb289590' => 'zma', 'Zm00001eb420150' => 'zma' ), 'gf_id' => 'HOM05D000968', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000968' ), 'data_identifier' => 'HOM05D000968', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000968', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p31690' => 'bna', 'A03p36040' => 'bna', 'A03p53730' => 'bna', 'A04p01410' => 'bna', 'A05p05420' => 'bna', 'A05p39630' => 'bna', 'A05p39640' => 'bna', 'A09p00970' => 'bna', 'A09p53060' => 'bna', 'A10p31890' => 'bna', 'Aa31LG10G15040' => 'aar', 'Aa31LG1G21090' => 'aar', 'Aa31LG1G26900' => 'aar', 'Aa31LG3G1820' => 'aar', 'Aa31LG5G1100' => 'aar', 'Aa31LG6G4740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2265' => 'aag', 'Actinidia07998' => 'ach', 'Actinidia11266' => 'ach', 'Actinidia12682' => 'ach', 'Actinidia26479' => 'ach', 'Actinidia31406' => 'ach', 'Actinidia32437' => 'ach', 'Actinidia38862' => 'ach', 'Ah.05g174230' => 'amhyb', 'Ah.05g179070' => 'amhyb', 'Ah.05g179090' => 'amhyb', 'Ah.12g059950' => 'amhyb', 'AL3G20480' => 'aly', 'AL4G44520' => 'aly', 'AL5G43110' => 'aly', 'AL6G13890' => 'aly', 'AL6G52620' => 'aly', 'AL7G30830' => 'aly', 'Aqoxy1G00899' => 'aox', 'Aqoxy5G04333' => 'aox', 'Aqoxy7G00641' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3IZ0NN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4EF6AW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W9P8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79GA3M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C43NQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFCU6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G95YVJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCHK29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LU1UG8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX91RN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGB4B1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8DA0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9H7JI' => 'arhy', 'AT3G09320' => 'ath', 'AT3G60800' => 'ath', 'AT4G00840' => 'ath', 'AT4G22750' => 'ath', 'AT5G04270' => 'ath', 'ATR0090G003' => 'atr', 'ATR0559G349' => 'atr', 'ATR0680G261' => 'atr', 'ATR0810G048' => 'atr', 'Atru.chr12.831' => 'acertr', 'Atru.chr5.303' => 'acertr', 'Atru.chr5.748' => 'acertr', 'Atru.chr8.1999' => 'acertr', 'Atru.chr9.1436' => 'acertr', 'AUR62004211' => 'cqu', 'AUR62004548' => 'cqu', 'AUR62013637' => 'cqu', 'AUR62022662' => 'cqu', 'AUR62025777' => 'cqu', 'AUR62042386' => 'cqu', 'BcaB01g02310' => 'bca', 'BcaB01g06062' => 'bca', 'BcaB02g08975' => 'bca', 'BcaB02g08980' => 'bca', 'BcaC01g04228' => 'bca', 'BcaC01g06830' => 'bca', 'BcaC02g10186' => 'bca', 'BcaC02g12214' => 'bca', 'BcaC04g24101' => 'bca', 'BcaC05g29520' => 'bca', 'BcaC05g29661' => 'bca', 'BcaC06g32130' => 'bca', 'BcaC06g32131' => 'bca', 'BcaC07g40601' => 'bca', 'BcaC07g42641' => 'bca', 'BcaNung01038' => 'bca', 'BcaNung01676' => 'bca', 'BcaNung02480' => 'bca', 'BcaNung07376' => 'bca', 'BolC3t16146H' => 'bol', 'BolC3t16637H' => 'bol', 'BolC4t22257H' => 'bol', 'BolC4t24728H' => 'bol', 'BolC5t34517H' => 'bol', 'BolC7t45703H' => 'bol', 'BolC8t51166H' => 'bol', 'BolC9t53038H' => 'bol', 'BolC9t60000H' => 'bol', 'BraA01t01345Z' => 'bra', 'BraA01t01346Z' => 'bra', 'BraA01t01348Z' => 'bra', 'BraA03t12347Z' => 'bra', 'BraA03t12775Z' => 'bra', 'BraA03t14439Z' => 'bra', 'BraA04t15860Z' => 'bra', 'BraA05t19511Z' => 'bra', 'BraA05t22746Z' => 'bra', 'BraA09t35767Z' => 'bra', 'BraA09t40732Z' => 'bra', 'BraA10t45233Z' => 'bra', 'C03p38720' => 'bna', 'C03p43680' => 'bna', 'C04p06350' => 'bna', 'C04p31800' => 'bna', 'C05p58680' => 'bna', 'C07p52110' => 'bna', 'C08p35760' => 'bna', 'C09p01050' => 'bna', 'C09p72600' => 'bna', 'CAN.G106.2' => 'can', 'CAN.G1482.1' => 'can', 'CAN.G324.12' => 'can', 'CAN.G388.20' => 'can', 'CAN.G412.7' => 'can', 'CAN.G694.32' => 'can', 'CAN.G92.12' => 'can', 'CANSAT11G2353' => 'cansat', 'CANSAT21G1398' => 'cansat', 'CANSAT56G2456' => 'cansat', 'CANSAT56G3031' => 'cansat', 'CANSAT56G4539' => 'cansat', 'CARHR083680' => 'chi', 'CARHR171190' => 'chi', 'CARHR209010' => 'chi', 'CARHR229680' => 'chi', 'CARHR249490' => 'chi', 'Carub.0003s0844' => 'cru', 'Carub.0005s2755' => 'cru', 'Carub.0006s0322' => 'cru', 'Carub.0006s3586' => 'cru', 'Carub.0007s1855' => 'cru', 'Ca_07808_v3' => 'car', 'Ca_09535_v3' => 'car', 'Ca_10548_v3' => 'car', 'Ca_19913_v3' => 'car', 'Ca_19916_v3' => 'car', 'Ca_19975_v3' => 'car', 'CBR_g22876' => 'cbr', 'CBR_g22879' => 'cbr', 'CBR_g38491' => 'cbr', 'CBR_g54185' => 'cbr', 'CBR_g54190' => 'cbr', 'Cc02_g11020' => 'ccan', 'Cc02_g23920' => 'ccan', 'Cc02_g39860' => 'ccan', 'Cc02_g39870' => 'ccan', 'Cc03_g06760' => 'ccan', 'Cc06_g02450' => 'ccan', 'Cc09_g09450' => 'ccan', 'CDE02G1959' => 'cde', 'CDE04G0600' => 'cde', 'CDE07G1996' => 'cde', 'CDE07G2078' => 'cde', 'CDE11G0611' => 'cde', 'Cfa001683' => 'cfa', 'Cfa001734' => 'cfa', 'Cfa001737' => 'cfa', 'Cfa003751' => 'cfa', 'Cfa012019' => 'cfa', 'Cfa017353' => 'cfa', 'Cfa017732' => 'cfa', 'Cfa022464' => 'cfa', 'Ciclev10012400m.g' => 'ccl', 'Ciclev10021242m.g' => 'ccl', 'Ciclev10021302m.g' => 'ccl', 'Ciclev10021463m.g' => 'ccl', 'Ciclev10032359m.g' => 'ccl', 'CiPaw.01G081000' => 'cil', 'CiPaw.01G262500' => 'cil', 'CiPaw.01G269800' => 'cil', 'CiPaw.02G168400' => 'cil', 'CiPaw.05G119500' => 'cil', 'CiPaw.11G147300' => 'cil', 'ClCG01G003630' => 'cla', 'ClCG05G000510' => 'cla', 'ClCG05G002300' => 'cla', 'ClCG08G007650' => 'cla', 'ClCG10G021250' => 'cla', 'COL.COLO4_06218' => 'col', 'COL.COLO4_12538' => 'col', 'COL.COLO4_14775' => 'col', 'COL.COLO4_23875' => 'col', 'Cpa.g.sc141.16' => 'cpa', 'Cpa.g.sc169.16' => 'cpa', 'Cpa.g.sc244.4' => 'cpa', 'Cpa.g.sc244.5' => 'cpa', 'Cpa.g.sc29.87' => 'cpa', 'Cpa.g.sc53.115' => 'cpa', 'Cre03.g207502' => 'cre', 'Cre06.g277000' => 'cre', 'Cre09.g394050' => 'cre', 'CsaV3_3G007680' => 'csa', 'CsaV3_3G009710' => 'csa', 'CsaV3_3G034790' => 'csa', 'CsaV3_5G003750' => 'csa', 'CsaV3_6G036620' => 'csa', 'CSS0002288' => 'camsi', 'CSS0011250' => 'camsi', 'CSS0021619' => 'camsi', 'CSS0046701' => 'camsi', 'DCAR_006420' => 'dca', 'DCAR_006865' => 'dca', 'DCAR_008558' => 'dca', 'DCAR_028754' => 'dca', 'DCAR_028755' => 'dca', 'Dinv31218' => 'din', 'Dinv32371' => 'din', 'Dinv34250' => 'din', 'Dinv37156' => 'din', 'Dinv43704' => 'din', 'Duzib093G1811' => 'dzi', 'Duzib106G1622' => 'dzi', 'Duzib114G0504' => 'dzi', 'Duzib128G0338' => 'dzi', 'Duzib128G1577' => 'dzi', 'Duzib133G0104' => 'dzi', 'Duzib133G1080' => 'dzi', 'Duzib138G0324' => 'dzi', 'Duzib138G0394' => 'dzi', 'Duzib205G0122' => 'dzi', 'Duzib268G1020' => 'dzi', 'Duzib268G1359' => 'dzi', 'ECA232G3929' => 'eca', 'ECA236G2210' => 'eca', 'ECA236G2287' => 'eca', 'ECA240G4568' => 'eca', 'ECA247G0894' => 'eca', 'EL10Ac1g00200' => 'bvu', 'EL10Ac1g00886' => 'bvu', 'EL10As1g23091' => 'bvu', 'EL10As1g23092' => 'bvu', 'Eucgr.A01284' => 'egr', 'Eucgr.A01285' => 'egr', 'Eucgr.D02456' => 'egr', 'Eucgr.E00018' => 'egr', 'Eucgr.E01439' => 'egr', 'Eucgr.G02859' => 'egr', 'FAN01G0168' => 'fan', 'FAN01G0453' => 'fan', 'FAN01G2761' => 'fan', 'FAN02G1239' => 'fan', 'FAN03G0645' => 'fan', 'FAN03G2707' => 'fan', 'FAN03G2978' => 'fan', 'FAN04G0227' => 'fan', 'FAN06G0091' => 'fan', 'FAN06G1418' => 'fan', 'FAN06G1512' => 'fan', 'FAN06G1986' => 'fan', 'FAN06G2905' => 'fan', 'FAN06G4325' => 'fan', 'FAN08G0033' => 'fan', 'FAN09G0642' => 'fan', 'FAN10G1763' => 'fan', 'FAN10G2026' => 'fan', 'FAN10G2513' => 'fan', 'FAN10G3402' => 'fan', 'FAN10G3564' => 'fan', 'FAN10G3987' => 'fan', 'FAN13G1490' => 'fan', 'FAN14G5857' => 'fan', 'FAN18G1188' => 'fan', 'FvH4_5g00750' => 'fve', 'FvH4_6g13410' => 'fve', 'FvH4_7g11740' => 'fve', 'FvH4_7g17410' => 'fve', 'FvH4_7g18860' => 'fve', 'Glyma.01G099100' => 'gma', 'Glyma.01G142300' => 'gma', 'Glyma.03G025500' => 'gma', 'Glyma.03G069700' => 'gma', 'Glyma.03G260000' => 'gma', 'Glyma.09G269800' => 'gma', 'Glyma.10G208700' => 'gma', 'Glyma.18G220400' => 'gma', 'Glyma.20G182000' => 'gma', 'Gohir.A01G221726' => 'ghi', 'Gohir.A07G134600' => 'ghi', 'Gohir.A07G146000' => 'ghi', 'Gohir.A08G173900' => 'ghi', 'Gohir.A09G194900' => 'ghi', 'Gohir.A10G204100' => 'ghi', 'Gohir.A11G080600' => 'ghi', 'Gohir.A11G327500' => 'ghi', 'Gohir.A12G101800' => 'ghi', 'Gohir.D01G211200' => 'ghi', 'Gohir.D07G139200' => 'ghi', 'Gohir.D07G152100' => 'ghi', 'Gohir.D08G192600' => 'ghi', 'Gohir.D09G189200' => 'ghi', 'Gohir.D10G212000' => 'ghi', 'Gohir.D11G085200' => 'ghi', 'Gohir.D11G346400' => 'ghi', 'Gohir.D12G104800' => 'ghi', 'Gorai.001G151300' => 'gra', 'Gorai.001G174100' => 'gra', 'Gorai.002G257000' => 'gra', 'Gorai.004G202600' => 'gra', 'Gorai.007G090900' => 'gra', 'Gorai.007G376700' => 'gra', 'Gorai.008G114100' => 'gra', 'Gorai.011G237900' => 'gra', 'GSVIVG01005450001' => 'vvi', 'GSVIVG01016232001' => 'vvi', 'GSVIVG01026157001' => 'vvi', 'GSVIVG01027419001' => 'vvi', 'GSVIVG01027631001' => 'vvi', 'GSVIVG01034143001' => 'vvi', 'HanXRQChr03g0093921' => 'han', 'HanXRQChr04g0120001' => 'han', 'HanXRQChr04g0122561' => 'han', 'HanXRQChr09g0246851' => 'han', 'HanXRQChr10g0293311' => 'han', 'HanXRQChr13g0425231' => 'han', 'HanXRQChr16g0532571' => 'han', 'Haze_09050' => 'cav', 'Haze_15715' => 'cav', 'Haze_15716' => 'cav', 'Haze_16803' => 'cav', 'Haze_16850' => 'cav', 'Hma1.2p1_0301F.1_g118655' => 'hma', 'Hma1.2p1_0309F.1_g120590' => 'hma', 'Hma1.2p1_0936F.1_g238900' => 'hma', 'Hma1.2p1_3552F.1_g336740' => 'hma', 'HPP92_003520' => 'vpl', 'HPP92_006628' => 'vpl', 'HPP92_006645' => 'vpl', 'HPP92_014669' => 'vpl', 'HPP92_015077' => 'vpl', 'Hund16742' => 'sun', 'Hund17022' => 'sun', 'Lalb_Chr02g0152131' => 'lal', 'Lalb_Chr05g0225371' => 'lal', 'Lalb_Chr07g0189841' => 'lal', 'Lalb_Chr07g0192961' => 'lal', 'Lalb_Chr12g0208221' => 'lal', 'Lalb_Chr13g0291211' => 'lal', 'Lalb_Chr13g0291781' => 'lal', 'Lalb_Chr18g0044651' => 'lal', 'Lalb_Chr21g0313731' => 'lal', 'Lj1g0022533' => 'lja', 'Lj2A18T50' => 'lonja', 'Lj2A92G93' => 'lonja', 'Lj3A965T73' => 'lonja', 'Lj3g0000673' => 'lja', 'Lj3g0002666' => 'lja', 'Lj4g0016985' => 'lja', 'Lj5g0003625' => 'lja', 'Lj7A529G36' => 'lonja', 'Lj9A569T49' => 'lonja', 'Lj9A604T63' => 'lonja', 'Lsat_1_v5_gn_3_132060' => 'lsa', 'Lsat_1_v5_gn_4_68941' => 'lsa', 'Lsat_1_v5_gn_5_95580' => 'lsa', 'Lsat_1_v5_gn_7_161' => 'lsa', 'Lsat_1_v5_gn_7_7041' => 'lsa', 'Lsat_1_v5_gn_9_33481' => 'lsa', 'Lsat_1_v5_gn_9_68260' => 'lsa', 'Manes.01G073100' => 'mes', 'Manes.01G266300' => 'mes', 'Manes.02G033300' => 'mes', 'Manes.05G017900' => 'mes', 'Manes.05G046100' => 'mes', 'Manes.08G080900' => 'mes', 'Manes.10G049400' => 'mes', 'Mapoly0009s0186' => 'mpo', 'Mapoly0036s0118' => 'mpo', 'Mapoly0101s0046' => 'mpo', 'MBI04_g30218_MAGBIO' => 'mbi', 'MBI04_g35564_MAGBIO' => 'mbi', 'MBI12_g34011_MAGBIO' => 'mbi', 'MBI14_g04655_MAGBIO' => 'mbi', 'MCO07G653' => 'mco', 'MCO10G173' => 'mco', 'MD01G1087100' => 'mdo', 'MD01G1104200' => 'mdo', 'MD02G1205100' => 'mdo', 'MD04G1079200' => 'mdo', 'MD04G1131400' => 'mdo', 'MD07G1121600' => 'mdo', 'MD07G1157300' => 'mdo', 'MD07G1171000' => 'mdo', 'MD12G1144500' => 'mdo', 'Medtr1g094610' => 'mtr', 'Medtr4g021795' => 'mtr', 'Medtr4g023760' => 'mtr', 'Medtr7g118050' => 'mtr', 'MELO3C005582.2' => 'cme', 'MELO3C005989.2' => 'cme', 'MELO3C006192.2' => 'cme', 'MELO3C009248.2' => 'cme', 'MELO3C019817.2' => 'cme', 'Migut.B01625' => 'egut', 'Migut.B01915' => 'egut', 'Migut.F01721' => 'egut', 'Migut.J00314' => 'egut', 'MSTRG.20742' => 'ama', 'MSTRG.8134' => 'ama', 'Nitab4.5_0000096g0010' => 'nta', 'Nitab4.5_0000202g0030' => 'nta', 'Nitab4.5_0000216g0370' => 'nta', 'Nitab4.5_0000457g0230' => 'nta', 'Nitab4.5_0001702g0170' => 'nta', 'Nitab4.5_0003607g0010' => 'nta', 'Nitab4.5_0004917g0020' => 'nta', 'Nitab4.5_0007059g0010' => 'nta', 'Nitab4.5_0007184g0010' => 'nta', 'Nitab4.5_0007346g0020' => 'nta', 'Nn1g00410' => 'nnu', 'Nn1g01252' => 'nnu', 'Nn2g11168' => 'nnu', 'Nn2g13403' => 'nnu', 'Nn2g13760' => 'nnu', 'Nn4g26380' => 'nnu', 'Oeu000806.2' => 'oeu', 'Oeu005788.1' => 'oeu', 'Oeu006900.3' => 'oeu', 'Oeu007797.1' => 'oeu', 'Oeu011932.1' => 'oeu', 'Oeu022739.1' => 'oeu', 'Oeu037918.1' => 'oeu', 'Oeu055490.2' => 'oeu', 'Os01g0844400' => 'osa', 'Os02g0819100' => 'osa', 'Os03g0804300' => 'osa', 'Os05g0458000' => 'osa', 'Os07g0467800' => 'osa', 'Os12g0602200' => 'osa', 'Peaxi162Scf00013g03444' => 'pax', 'Peaxi162Scf00094g01120' => 'pax', 'Peaxi162Scf00191g01211' => 'pax', 'Peaxi162Scf00238g01110' => 'pax', 'Peaxi162Scf00330g00719' => 'pax', 'Peaxi162Scf00627g00018' => 'pax', 'PGR031G2686' => 'pgr', 'PGR042G0809' => 'pgr', 'PGR142G0193' => 'pgr', 'PGSC0003DMG400011066' => 'stu', 'PGSC0003DMG400012041' => 'stu', 'PGSC0003DMG400013678' => 'stu', 'PGSC0003DMG400023477' => 'stu', 'PGSC0003DMG400025956' => 'stu', 'PGSC0003DMG401019151' => 'stu', 'Phvul.006G116400' => 'pvu', 'Phvul.007G097300' => 'pvu', 'Phvul.010G015000' => 'pvu', 'Phvul.010G083900' => 'pvu', 'Potri.001G117100' => 'ptr', 'Potri.002G147300' => 'ptr', 'Potri.003G115600' => 'ptr', 'Potri.006G087400' => 'ptr', 'Potri.010G226100' => 'ptr', 'Potri.014G069200' => 'ptr', 'Potri.014G104000' => 'ptr', 'Potri.016G100200' => 'ptr', 'Pp3c10_20450' => 'ppa', 'Pp3c1_42400' => 'ppa', 'Pp3c3_24390' => 'ppa', 'Pp3c3_2860' => 'ppa', 'PRCOL_00003193' => 'pco', 'Prupe.2G144500' => 'ppe', 'Prupe.2G195700' => 'ppe', 'Prupe.2G209800' => 'ppe', 'Prupe.5G080000' => 'ppe', 'Prupe.6G257900' => 'ppe', 'Psat3g001160' => 'psa', 'Psat6g181880' => 'psa', 'Psat7g233720' => 'psa', 'PSO063G7587' => 'pso', 'PSO339G2145' => 'pso', 'PSO339G3369' => 'pso', 'PSO478G2747' => 'pso', 'PSO513G0140' => 'pso', 'PSO782G1614' => 'pso', 'PSO782G4889' => 'pso', 'PSO782G5485' => 'pso', 'PSO801G0241' => 'pso', 'QL07p048854' => 'qlo', 'QL08p046745' => 'qlo', 'QL08p052606' => 'qlo', 'QL08p053414' => 'qlo', 'QL08p054868' => 'qlo', 'RcHm_v2.0_Chr1g0350251' => 'rch', 'RcHm_v2.0_Chr1g0360851' => 'rch', 'RcHm_v2.0_Chr1g0362791' => 'rch', 'RcHm_v2.0_Chr3g0466281' => 'rch', 'RcHm_v2.0_Chr7g0201481' => 'rch', 'Rhsim01G0148600' => 'rsi', 'Rhsim05G0194400' => 'rsi', 'Rhsim07G0000700' => 'rsi', 'Rhsim07G0000800' => 'rsi', 'Rhsim07G0027900' => 'rsi', 'Rhsim09G0149500' => 'rsi', 'RhsimUnG0186900' => 'rsi', 'Sabra01G0089900' => 'sbr', 'Sabra02G0114700' => 'sbr', 'Sabra02G0116300' => 'sbr', 'Sabra03G0080100' => 'sbr', 'Sabra08G0024300' => 'sbr', 'Sabra10G0174300' => 'sbr', 'Sabra14G0048900' => 'sbr', 'Sabra14G0076500' => 'sbr', 'SalBow5G2513' => 'sbo', 'Sc01g0002300' => 'sci', 'Sc01g0004450' => 'sci', 'Sc06g0001680' => 'sci', 'Sc23g0003580' => 'sci', 'Sed0000913' => 'sed', 'Sed0001655' => 'sed', 'Sed0007745' => 'sed', 'Sed0010951' => 'sed', 'Sed0017599' => 'sed', 'Sed0021405' => 'sed', 'Sed0022810' => 'sed', 'SEGI_07099' => 'sgi', 'SEGI_11931' => 'sgi', 'SEGI_13187' => 'sgi', 'SEGI_29958' => 'sgi', 'SEGI_36351' => 'sgi', 'SGA_v2.0_scaffold126G33770' => 'sas', 'SGA_v2.0_scaffold153G37003' => 'sas', 'SGA_v2.0_scaffold2G01359' => 'sas', 'SGA_v2.0_scaffold5G03064' => 'sas', 'SGA_v2.0_scaffold95G28903' => 'sas', 'SHI12701' => 'shi', 'SHI26410' => 'shi', 'SHI38997' => 'shi', 'SHI53759' => 'shi', 'SHI53886' => 'shi', 'SHI54714' => 'shi', 'SMO011G0041' => 'smo', 'SMO146G0251' => 'smo', 'SMO160G0004' => 'smo', 'SMO174G0057' => 'smo', 'SMO244G0089' => 'smo', 'SMO296G0011' => 'smo', 'Solyc01g091280.3' => 'sly', 'Solyc05g047610.3' => 'sly', 'Solyc05g047640.3' => 'sly', 'Solyc05g055630.3' => 'sly', 'Solyc10g018160.2' => 'sly', 'Solyc10g084820.2' => 'sly', 'Solyc10g086565.2' => 'sly', 'Sopen01g037030' => 'spe', 'Sopen05g027920' => 'spe', 'Sopen05g034070' => 'spe', 'Sopen10g007260' => 'spe', 'Sopen10g034260' => 'spe', 'Sopen10g035950' => 'spe', 'Sp3g07710' => 'spa', 'Sp4g27420' => 'spa', 'Sp5g02450' => 'spa', 'Sp6g01280' => 'spa', 'Sp6g38480' => 'spa', 'Sp7g20780' => 'spa', 'TAR374G1413' => 'tar', 'TAR623G1777' => 'tar', 'TAR629G2370' => 'tar', 'TAR633G1759' => 'tar', 'TAR636G3387' => 'tar', 'THA.LOC104802447' => 'tha', 'THA.LOC104813916' => 'tha', 'THA.LOC104816423' => 'tha', 'THA.LOC104817246' => 'tha', 'THA.LOC104825895' => 'tha', 'Thecc.01G335200' => 'tca', 'Thecc.01G377400' => 'tca', 'Thecc.03G262200' => 'tca', 'Thecc.05G036800' => 'tca', 'Thecc.10G080500' => 'tca', 'Thecc.10G080800' => 'tca', 'Thhalv10001560m.g' => 'esa', 'Thhalv10006120m.g' => 'esa', 'Thhalv10014375m.g' => 'esa', 'Thhalv10021264m.g' => 'esa', 'Thhalv10028856m.g' => 'esa', 'TPR.G1914' => 'tpr', 'TPR.G4757' => 'tpr', 'TPR.G5595' => 'tpr', 'TWI14G0952' => 'twi', 'TWI14G1307' => 'twi', 'TWI38G2143' => 'twi', 'TWI59G0826' => 'twi', 'TWI77G0527' => 'twi', 'TWI81G0150' => 'twi', 'unitig_21.g21018' => 'ugi', 'unitig_26.g9725' => 'ugi', 'unitig_744.g24653' => 'ugi', 'unitig_749.g13778' => 'ugi', 'unitig_899.g15035' => 'ugi', 'vmacro04296' => 'vma', 'vmacro04852' => 'vma', 'vmacro13404' => 'vma', 'vmacro20169' => 'vma', 'vmacro21014' => 'vma', 'VMungo0331G0237' => 'vmu', 'VMungo0331G0706' => 'vmu', 'VMungo0331G1361' => 'vmu', 'VMungo0331G1489' => 'vmu', 'VMungo0540G1037' => 'vmu', 'VMungo0720G2487' => 'vmu', 'VMungo0720G2721' => 'vmu', 'Zm00001eb086860' => 'zma', 'Zm00001eb104760' => 'zma', 'Zm00001eb148220' => 'zma', 'Zm00001eb259030' => 'zma', 'Zm00001eb289590' => 'zma', 'Zm00001eb420150' => 'zma' ) $gf_id = 'HOM05D000968' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000968' ) $data_identifier = 'HOM05D000968' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 19, 'bol' => (int) 9, 'bra' => (int) 12, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 5, 'ccan' => (int) 7, 'cde' => (int) 5, 'cfa' => (int) 8, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 4, 'dca' => (int) 5, 'din' => (int) 5, 'dzi' => (int) 12, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 25, 'fve' => (int) 5, 'gma' => (int) 9, 'ghi' => (int) 18, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 7, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 5, 'sun' => (int) 2, 'lal' => (int) 9, 'lja' => (int) 5, 'lonja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 9, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 2, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 3, 'stu' => (int) 6, 'pvu' => (int) 4, 'ptr' => (int) 8, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 3, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 1, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 5, 'sas' => (int) 5, 'shi' => (int) 6, 'smo' => (int) 6, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 3, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420150' $species_info = array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ) $local_species = 'sbo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000968', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p31690' => 'bna', 'A03p36040' => 'bna', 'A03p53730' => 'bna', 'A04p01410' => 'bna', 'A05p05420' => 'bna', 'A05p39630' => 'bna', 'A05p39640' => 'bna', 'A09p00970' => 'bna', 'A09p53060' => 'bna', 'A10p31890' => 'bna', 'Aa31LG10G15040' => 'aar', 'Aa31LG1G21090' => 'aar', 'Aa31LG1G26900' => 'aar', 'Aa31LG3G1820' => 'aar', 'Aa31LG5G1100' => 'aar', 'Aa31LG6G4740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2265' => 'aag', 'Actinidia07998' => 'ach', 'Actinidia11266' => 'ach', 'Actinidia12682' => 'ach', 'Actinidia26479' => 'ach', 'Actinidia31406' => 'ach', 'Actinidia32437' => 'ach', 'Actinidia38862' => 'ach', 'Ah.05g174230' => 'amhyb', 'Ah.05g179070' => 'amhyb', 'Ah.05g179090' => 'amhyb', 'Ah.12g059950' => 'amhyb', 'AL3G20480' => 'aly', 'AL4G44520' => 'aly', 'AL5G43110' => 'aly', 'AL6G13890' => 'aly', 'AL6G52620' => 'aly', 'AL7G30830' => 'aly', 'Aqoxy1G00899' => 'aox', 'Aqoxy5G04333' => 'aox', 'Aqoxy7G00641' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3IZ0NN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4EF6AW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W9P8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79GA3M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C43NQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFCU6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G95YVJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCHK29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LU1UG8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX91RN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGB4B1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8DA0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9H7JI' => 'arhy', 'AT3G09320' => 'ath', 'AT3G60800' => 'ath', 'AT4G00840' => 'ath', 'AT4G22750' => 'ath', 'AT5G04270' => 'ath', 'ATR0090G003' => 'atr', 'ATR0559G349' => 'atr', 'ATR0680G261' => 'atr', 'ATR0810G048' => 'atr', 'Atru.chr12.831' => 'acertr', 'Atru.chr5.303' => 'acertr', 'Atru.chr5.748' => 'acertr', 'Atru.chr8.1999' => 'acertr', 'Atru.chr9.1436' => 'acertr', 'AUR62004211' => 'cqu', 'AUR62004548' => 'cqu', 'AUR62013637' => 'cqu', 'AUR62022662' => 'cqu', 'AUR62025777' => 'cqu', 'AUR62042386' => 'cqu', 'BcaB01g02310' => 'bca', 'BcaB01g06062' => 'bca', 'BcaB02g08975' => 'bca', 'BcaB02g08980' => 'bca', 'BcaC01g04228' => 'bca', 'BcaC01g06830' => 'bca', 'BcaC02g10186' => 'bca', 'BcaC02g12214' => 'bca', 'BcaC04g24101' => 'bca', 'BcaC05g29520' => 'bca', 'BcaC05g29661' => 'bca', 'BcaC06g32130' => 'bca', 'BcaC06g32131' => 'bca', 'BcaC07g40601' => 'bca', 'BcaC07g42641' => 'bca', 'BcaNung01038' => 'bca', 'BcaNung01676' => 'bca', 'BcaNung02480' => 'bca', 'BcaNung07376' => 'bca', 'BolC3t16146H' => 'bol', 'BolC3t16637H' => 'bol', 'BolC4t22257H' => 'bol', 'BolC4t24728H' => 'bol', 'BolC5t34517H' => 'bol', 'BolC7t45703H' => 'bol', 'BolC8t51166H' => 'bol', 'BolC9t53038H' => 'bol', 'BolC9t60000H' => 'bol', 'BraA01t01345Z' => 'bra', 'BraA01t01346Z' => 'bra', 'BraA01t01348Z' => 'bra', 'BraA03t12347Z' => 'bra', 'BraA03t12775Z' => 'bra', 'BraA03t14439Z' => 'bra', 'BraA04t15860Z' => 'bra', 'BraA05t19511Z' => 'bra', 'BraA05t22746Z' => 'bra', 'BraA09t35767Z' => 'bra', 'BraA09t40732Z' => 'bra', 'BraA10t45233Z' => 'bra', 'C03p38720' => 'bna', 'C03p43680' => 'bna', 'C04p06350' => 'bna', 'C04p31800' => 'bna', 'C05p58680' => 'bna', 'C07p52110' => 'bna', 'C08p35760' => 'bna', 'C09p01050' => 'bna', 'C09p72600' => 'bna', 'CAN.G106.2' => 'can', 'CAN.G1482.1' => 'can', 'CAN.G324.12' => 'can', 'CAN.G388.20' => 'can', 'CAN.G412.7' => 'can', 'CAN.G694.32' => 'can', 'CAN.G92.12' => 'can', 'CANSAT11G2353' => 'cansat', 'CANSAT21G1398' => 'cansat', 'CANSAT56G2456' => 'cansat', 'CANSAT56G3031' => 'cansat', 'CANSAT56G4539' => 'cansat', 'CARHR083680' => 'chi', 'CARHR171190' => 'chi', 'CARHR209010' => 'chi', 'CARHR229680' => 'chi', 'CARHR249490' => 'chi', 'Carub.0003s0844' => 'cru', 'Carub.0005s2755' => 'cru', 'Carub.0006s0322' => 'cru', 'Carub.0006s3586' => 'cru', 'Carub.0007s1855' => 'cru', 'Ca_07808_v3' => 'car', 'Ca_09535_v3' => 'car', 'Ca_10548_v3' => 'car', 'Ca_19913_v3' => 'car', 'Ca_19916_v3' => 'car', 'Ca_19975_v3' => 'car', 'CBR_g22876' => 'cbr', 'CBR_g22879' => 'cbr', 'CBR_g38491' => 'cbr', 'CBR_g54185' => 'cbr', 'CBR_g54190' => 'cbr', 'Cc02_g11020' => 'ccan', 'Cc02_g23920' => 'ccan', 'Cc02_g39860' => 'ccan', 'Cc02_g39870' => 'ccan', 'Cc03_g06760' => 'ccan', 'Cc06_g02450' => 'ccan', 'Cc09_g09450' => 'ccan', 'CDE02G1959' => 'cde', 'CDE04G0600' => 'cde', 'CDE07G1996' => 'cde', 'CDE07G2078' => 'cde', 'CDE11G0611' => 'cde', 'Cfa001683' => 'cfa', 'Cfa001734' => 'cfa', 'Cfa001737' => 'cfa', 'Cfa003751' => 'cfa', 'Cfa012019' => 'cfa', 'Cfa017353' => 'cfa', 'Cfa017732' => 'cfa', 'Cfa022464' => 'cfa', 'Ciclev10012400m.g' => 'ccl', 'Ciclev10021242m.g' => 'ccl', 'Ciclev10021302m.g' => 'ccl', 'Ciclev10021463m.g' => 'ccl', 'Ciclev10032359m.g' => 'ccl', 'CiPaw.01G081000' => 'cil', 'CiPaw.01G262500' => 'cil', 'CiPaw.01G269800' => 'cil', 'CiPaw.02G168400' => 'cil', 'CiPaw.05G119500' => 'cil', 'CiPaw.11G147300' => 'cil', 'ClCG01G003630' => 'cla', 'ClCG05G000510' => 'cla', 'ClCG05G002300' => 'cla', 'ClCG08G007650' => 'cla', 'ClCG10G021250' => 'cla', 'COL.COLO4_06218' => 'col', 'COL.COLO4_12538' => 'col', 'COL.COLO4_14775' => 'col', 'COL.COLO4_23875' => 'col', 'Cpa.g.sc141.16' => 'cpa', 'Cpa.g.sc169.16' => 'cpa', 'Cpa.g.sc244.4' => 'cpa', 'Cpa.g.sc244.5' => 'cpa', 'Cpa.g.sc29.87' => 'cpa', 'Cpa.g.sc53.115' => 'cpa', 'Cre03.g207502' => 'cre', 'Cre06.g277000' => 'cre', 'Cre09.g394050' => 'cre', 'CsaV3_3G007680' => 'csa', 'CsaV3_3G009710' => 'csa', 'CsaV3_3G034790' => 'csa', 'CsaV3_5G003750' => 'csa', 'CsaV3_6G036620' => 'csa', 'CSS0002288' => 'camsi', 'CSS0011250' => 'camsi', 'CSS0021619' => 'camsi', 'CSS0046701' => 'camsi', 'DCAR_006420' => 'dca', 'DCAR_006865' => 'dca', 'DCAR_008558' => 'dca', 'DCAR_028754' => 'dca', 'DCAR_028755' => 'dca', 'Dinv31218' => 'din', 'Dinv32371' => 'din', 'Dinv34250' => 'din', 'Dinv37156' => 'din', 'Dinv43704' => 'din', 'Duzib093G1811' => 'dzi', 'Duzib106G1622' => 'dzi', 'Duzib114G0504' => 'dzi', 'Duzib128G0338' => 'dzi', 'Duzib128G1577' => 'dzi', 'Duzib133G0104' => 'dzi', 'Duzib133G1080' => 'dzi', 'Duzib138G0324' => 'dzi', 'Duzib138G0394' => 'dzi', 'Duzib205G0122' => 'dzi', 'Duzib268G1020' => 'dzi', 'Duzib268G1359' => 'dzi', 'ECA232G3929' => 'eca', 'ECA236G2210' => 'eca', 'ECA236G2287' => 'eca', 'ECA240G4568' => 'eca', 'ECA247G0894' => 'eca', 'EL10Ac1g00200' => 'bvu', 'EL10Ac1g00886' => 'bvu', 'EL10As1g23091' => 'bvu', 'EL10As1g23092' => 'bvu', 'Eucgr.A01284' => 'egr', 'Eucgr.A01285' => 'egr', 'Eucgr.D02456' => 'egr', 'Eucgr.E00018' => 'egr', 'Eucgr.E01439' => 'egr', 'Eucgr.G02859' => 'egr', 'FAN01G0168' => 'fan', 'FAN01G0453' => 'fan', 'FAN01G2761' => 'fan', 'FAN02G1239' => 'fan', 'FAN03G0645' => 'fan', 'FAN03G2707' => 'fan', 'FAN03G2978' => 'fan', 'FAN04G0227' => 'fan', 'FAN06G0091' => 'fan', 'FAN06G1418' => 'fan', 'FAN06G1512' => 'fan', 'FAN06G1986' => 'fan', 'FAN06G2905' => 'fan', 'FAN06G4325' => 'fan', 'FAN08G0033' => 'fan', 'FAN09G0642' => 'fan', 'FAN10G1763' => 'fan', 'FAN10G2026' => 'fan', 'FAN10G2513' => 'fan', 'FAN10G3402' => 'fan', 'FAN10G3564' => 'fan', 'FAN10G3987' => 'fan', 'FAN13G1490' => 'fan', 'FAN14G5857' => 'fan', 'FAN18G1188' => 'fan', 'FvH4_5g00750' => 'fve', 'FvH4_6g13410' => 'fve', 'FvH4_7g11740' => 'fve', 'FvH4_7g17410' => 'fve', 'FvH4_7g18860' => 'fve', 'Glyma.01G099100' => 'gma', 'Glyma.01G142300' => 'gma', 'Glyma.03G025500' => 'gma', 'Glyma.03G069700' => 'gma', 'Glyma.03G260000' => 'gma', 'Glyma.09G269800' => 'gma', 'Glyma.10G208700' => 'gma', 'Glyma.18G220400' => 'gma', 'Glyma.20G182000' => 'gma', 'Gohir.A01G221726' => 'ghi', 'Gohir.A07G134600' => 'ghi', 'Gohir.A07G146000' => 'ghi', 'Gohir.A08G173900' => 'ghi', 'Gohir.A09G194900' => 'ghi', 'Gohir.A10G204100' => 'ghi', 'Gohir.A11G080600' => 'ghi', 'Gohir.A11G327500' => 'ghi', 'Gohir.A12G101800' => 'ghi', 'Gohir.D01G211200' => 'ghi', 'Gohir.D07G139200' => 'ghi', 'Gohir.D07G152100' => 'ghi', 'Gohir.D08G192600' => 'ghi', 'Gohir.D09G189200' => 'ghi', 'Gohir.D10G212000' => 'ghi', 'Gohir.D11G085200' => 'ghi', 'Gohir.D11G346400' => 'ghi', 'Gohir.D12G104800' => 'ghi', 'Gorai.001G151300' => 'gra', 'Gorai.001G174100' => 'gra', 'Gorai.002G257000' => 'gra', 'Gorai.004G202600' => 'gra', 'Gorai.007G090900' => 'gra', 'Gorai.007G376700' => 'gra', 'Gorai.008G114100' => 'gra', 'Gorai.011G237900' => 'gra', 'GSVIVG01005450001' => 'vvi', 'GSVIVG01016232001' => 'vvi', 'GSVIVG01026157001' => 'vvi', 'GSVIVG01027419001' => 'vvi', 'GSVIVG01027631001' => 'vvi', 'GSVIVG01034143001' => 'vvi', 'HanXRQChr03g0093921' => 'han', 'HanXRQChr04g0120001' => 'han', 'HanXRQChr04g0122561' => 'han', 'HanXRQChr09g0246851' => 'han', 'HanXRQChr10g0293311' => 'han', 'HanXRQChr13g0425231' => 'han', 'HanXRQChr16g0532571' => 'han', 'Haze_09050' => 'cav', 'Haze_15715' => 'cav', 'Haze_15716' => 'cav', 'Haze_16803' => 'cav', 'Haze_16850' => 'cav', 'Hma1.2p1_0301F.1_g118655' => 'hma', 'Hma1.2p1_0309F.1_g120590' => 'hma', 'Hma1.2p1_0936F.1_g238900' => 'hma', 'Hma1.2p1_3552F.1_g336740' => 'hma', 'HPP92_003520' => 'vpl', 'HPP92_006628' => 'vpl', 'HPP92_006645' => 'vpl', 'HPP92_014669' => 'vpl', 'HPP92_015077' => 'vpl', 'Hund16742' => 'sun', 'Hund17022' => 'sun', 'Lalb_Chr02g0152131' => 'lal', 'Lalb_Chr05g0225371' => 'lal', 'Lalb_Chr07g0189841' => 'lal', 'Lalb_Chr07g0192961' => 'lal', 'Lalb_Chr12g0208221' => 'lal', 'Lalb_Chr13g0291211' => 'lal', 'Lalb_Chr13g0291781' => 'lal', 'Lalb_Chr18g0044651' => 'lal', 'Lalb_Chr21g0313731' => 'lal', 'Lj1g0022533' => 'lja', 'Lj2A18T50' => 'lonja', 'Lj2A92G93' => 'lonja', 'Lj3A965T73' => 'lonja', 'Lj3g0000673' => 'lja', 'Lj3g0002666' => 'lja', 'Lj4g0016985' => 'lja', 'Lj5g0003625' => 'lja', 'Lj7A529G36' => 'lonja', 'Lj9A569T49' => 'lonja', 'Lj9A604T63' => 'lonja', 'Lsat_1_v5_gn_3_132060' => 'lsa', 'Lsat_1_v5_gn_4_68941' => 'lsa', 'Lsat_1_v5_gn_5_95580' => 'lsa', 'Lsat_1_v5_gn_7_161' => 'lsa', 'Lsat_1_v5_gn_7_7041' => 'lsa', 'Lsat_1_v5_gn_9_33481' => 'lsa', 'Lsat_1_v5_gn_9_68260' => 'lsa', 'Manes.01G073100' => 'mes', 'Manes.01G266300' => 'mes', 'Manes.02G033300' => 'mes', 'Manes.05G017900' => 'mes', 'Manes.05G046100' => 'mes', 'Manes.08G080900' => 'mes', 'Manes.10G049400' => 'mes', 'Mapoly0009s0186' => 'mpo', 'Mapoly0036s0118' => 'mpo', 'Mapoly0101s0046' => 'mpo', 'MBI04_g30218_MAGBIO' => 'mbi', 'MBI04_g35564_MAGBIO' => 'mbi', 'MBI12_g34011_MAGBIO' => 'mbi', 'MBI14_g04655_MAGBIO' => 'mbi', 'MCO07G653' => 'mco', 'MCO10G173' => 'mco', 'MD01G1087100' => 'mdo', 'MD01G1104200' => 'mdo', 'MD02G1205100' => 'mdo', 'MD04G1079200' => 'mdo', 'MD04G1131400' => 'mdo', 'MD07G1121600' => 'mdo', 'MD07G1157300' => 'mdo', 'MD07G1171000' => 'mdo', 'MD12G1144500' => 'mdo', 'Medtr1g094610' => 'mtr', 'Medtr4g021795' => 'mtr', 'Medtr4g023760' => 'mtr', 'Medtr7g118050' => 'mtr', 'MELO3C005582.2' => 'cme', 'MELO3C005989.2' => 'cme', 'MELO3C006192.2' => 'cme', 'MELO3C009248.2' => 'cme', 'MELO3C019817.2' => 'cme', 'Migut.B01625' => 'egut', 'Migut.B01915' => 'egut', 'Migut.F01721' => 'egut', 'Migut.J00314' => 'egut', 'MSTRG.20742' => 'ama', 'MSTRG.8134' => 'ama', 'Nitab4.5_0000096g0010' => 'nta', 'Nitab4.5_0000202g0030' => 'nta', 'Nitab4.5_0000216g0370' => 'nta', 'Nitab4.5_0000457g0230' => 'nta', 'Nitab4.5_0001702g0170' => 'nta', 'Nitab4.5_0003607g0010' => 'nta', 'Nitab4.5_0004917g0020' => 'nta', 'Nitab4.5_0007059g0010' => 'nta', 'Nitab4.5_0007184g0010' => 'nta', 'Nitab4.5_0007346g0020' => 'nta', 'Nn1g00410' => 'nnu', 'Nn1g01252' => 'nnu', 'Nn2g11168' => 'nnu', 'Nn2g13403' => 'nnu', 'Nn2g13760' => 'nnu', 'Nn4g26380' => 'nnu', 'Oeu000806.2' => 'oeu', 'Oeu005788.1' => 'oeu', 'Oeu006900.3' => 'oeu', 'Oeu007797.1' => 'oeu', 'Oeu011932.1' => 'oeu', 'Oeu022739.1' => 'oeu', 'Oeu037918.1' => 'oeu', 'Oeu055490.2' => 'oeu', 'Os01g0844400' => 'osa', 'Os02g0819100' => 'osa', 'Os03g0804300' => 'osa', 'Os05g0458000' => 'osa', 'Os07g0467800' => 'osa', 'Os12g0602200' => 'osa', 'Peaxi162Scf00013g03444' => 'pax', 'Peaxi162Scf00094g01120' => 'pax', 'Peaxi162Scf00191g01211' => 'pax', 'Peaxi162Scf00238g01110' => 'pax', 'Peaxi162Scf00330g00719' => 'pax', 'Peaxi162Scf00627g00018' => 'pax', 'PGR031G2686' => 'pgr', 'PGR042G0809' => 'pgr', 'PGR142G0193' => 'pgr', 'PGSC0003DMG400011066' => 'stu', 'PGSC0003DMG400012041' => 'stu', 'PGSC0003DMG400013678' => 'stu', 'PGSC0003DMG400023477' => 'stu', 'PGSC0003DMG400025956' => 'stu', 'PGSC0003DMG401019151' => 'stu', 'Phvul.006G116400' => 'pvu', 'Phvul.007G097300' => 'pvu', 'Phvul.010G015000' => 'pvu', 'Phvul.010G083900' => 'pvu', 'Potri.001G117100' => 'ptr', 'Potri.002G147300' => 'ptr', 'Potri.003G115600' => 'ptr', 'Potri.006G087400' => 'ptr', 'Potri.010G226100' => 'ptr', 'Potri.014G069200' => 'ptr', 'Potri.014G104000' => 'ptr', 'Potri.016G100200' => 'ptr', 'Pp3c10_20450' => 'ppa', 'Pp3c1_42400' => 'ppa', 'Pp3c3_24390' => 'ppa', 'Pp3c3_2860' => 'ppa', 'PRCOL_00003193' => 'pco', 'Prupe.2G144500' => 'ppe', 'Prupe.2G195700' => 'ppe', 'Prupe.2G209800' => 'ppe', 'Prupe.5G080000' => 'ppe', 'Prupe.6G257900' => 'ppe', 'Psat3g001160' => 'psa', 'Psat6g181880' => 'psa', 'Psat7g233720' => 'psa', 'PSO063G7587' => 'pso', 'PSO339G2145' => 'pso', 'PSO339G3369' => 'pso', 'PSO478G2747' => 'pso', 'PSO513G0140' => 'pso', 'PSO782G1614' => 'pso', 'PSO782G4889' => 'pso', 'PSO782G5485' => 'pso', 'PSO801G0241' => 'pso', 'QL07p048854' => 'qlo', 'QL08p046745' => 'qlo', 'QL08p052606' => 'qlo', 'QL08p053414' => 'qlo', 'QL08p054868' => 'qlo', 'RcHm_v2.0_Chr1g0350251' => 'rch', 'RcHm_v2.0_Chr1g0360851' => 'rch', 'RcHm_v2.0_Chr1g0362791' => 'rch', 'RcHm_v2.0_Chr3g0466281' => 'rch', 'RcHm_v2.0_Chr7g0201481' => 'rch', 'Rhsim01G0148600' => 'rsi', 'Rhsim05G0194400' => 'rsi', 'Rhsim07G0000700' => 'rsi', 'Rhsim07G0000800' => 'rsi', 'Rhsim07G0027900' => 'rsi', 'Rhsim09G0149500' => 'rsi', 'RhsimUnG0186900' => 'rsi', 'Sabra01G0089900' => 'sbr', 'Sabra02G0114700' => 'sbr', 'Sabra02G0116300' => 'sbr', 'Sabra03G0080100' => 'sbr', 'Sabra08G0024300' => 'sbr', 'Sabra10G0174300' => 'sbr', 'Sabra14G0048900' => 'sbr', 'Sabra14G0076500' => 'sbr', 'SalBow5G2513' => 'sbo', 'Sc01g0002300' => 'sci', 'Sc01g0004450' => 'sci', 'Sc06g0001680' => 'sci', 'Sc23g0003580' => 'sci', 'Sed0000913' => 'sed', 'Sed0001655' => 'sed', 'Sed0007745' => 'sed', 'Sed0010951' => 'sed', 'Sed0017599' => 'sed', 'Sed0021405' => 'sed', 'Sed0022810' => 'sed', 'SEGI_07099' => 'sgi', 'SEGI_11931' => 'sgi', 'SEGI_13187' => 'sgi', 'SEGI_29958' => 'sgi', 'SEGI_36351' => 'sgi', 'SGA_v2.0_scaffold126G33770' => 'sas', 'SGA_v2.0_scaffold153G37003' => 'sas', 'SGA_v2.0_scaffold2G01359' => 'sas', 'SGA_v2.0_scaffold5G03064' => 'sas', 'SGA_v2.0_scaffold95G28903' => 'sas', 'SHI12701' => 'shi', 'SHI26410' => 'shi', 'SHI38997' => 'shi', 'SHI53759' => 'shi', 'SHI53886' => 'shi', 'SHI54714' => 'shi', 'SMO011G0041' => 'smo', 'SMO146G0251' => 'smo', 'SMO160G0004' => 'smo', 'SMO174G0057' => 'smo', 'SMO244G0089' => 'smo', 'SMO296G0011' => 'smo', 'Solyc01g091280.3' => 'sly', 'Solyc05g047610.3' => 'sly', 'Solyc05g047640.3' => 'sly', 'Solyc05g055630.3' => 'sly', 'Solyc10g018160.2' => 'sly', 'Solyc10g084820.2' => 'sly', 'Solyc10g086565.2' => 'sly', 'Sopen01g037030' => 'spe', 'Sopen05g027920' => 'spe', 'Sopen05g034070' => 'spe', 'Sopen10g007260' => 'spe', 'Sopen10g034260' => 'spe', 'Sopen10g035950' => 'spe', 'Sp3g07710' => 'spa', 'Sp4g27420' => 'spa', 'Sp5g02450' => 'spa', 'Sp6g01280' => 'spa', 'Sp6g38480' => 'spa', 'Sp7g20780' => 'spa', 'TAR374G1413' => 'tar', 'TAR623G1777' => 'tar', 'TAR629G2370' => 'tar', 'TAR633G1759' => 'tar', 'TAR636G3387' => 'tar', 'THA.LOC104802447' => 'tha', 'THA.LOC104813916' => 'tha', 'THA.LOC104816423' => 'tha', 'THA.LOC104817246' => 'tha', 'THA.LOC104825895' => 'tha', 'Thecc.01G335200' => 'tca', 'Thecc.01G377400' => 'tca', 'Thecc.03G262200' => 'tca', 'Thecc.05G036800' => 'tca', 'Thecc.10G080500' => 'tca', 'Thecc.10G080800' => 'tca', 'Thhalv10001560m.g' => 'esa', 'Thhalv10006120m.g' => 'esa', 'Thhalv10014375m.g' => 'esa', 'Thhalv10021264m.g' => 'esa', 'Thhalv10028856m.g' => 'esa', 'TPR.G1914' => 'tpr', 'TPR.G4757' => 'tpr', 'TPR.G5595' => 'tpr', 'TWI14G0952' => 'twi', 'TWI14G1307' => 'twi', 'TWI38G2143' => 'twi', 'TWI59G0826' => 'twi', 'TWI77G0527' => 'twi', 'TWI81G0150' => 'twi', 'unitig_21.g21018' => 'ugi', 'unitig_26.g9725' => 'ugi', 'unitig_744.g24653' => 'ugi', 'unitig_749.g13778' => 'ugi', 'unitig_899.g15035' => 'ugi', 'vmacro04296' => 'vma', 'vmacro04852' => 'vma', 'vmacro13404' => 'vma', 'vmacro20169' => 'vma', 'vmacro21014' => 'vma', 'VMungo0331G0237' => 'vmu', 'VMungo0331G0706' => 'vmu', 'VMungo0331G1361' => 'vmu', 'VMungo0331G1489' => 'vmu', 'VMungo0540G1037' => 'vmu', 'VMungo0720G2487' => 'vmu', 'VMungo0720G2721' => 'vmu', 'Zm00001eb086860' => 'zma', 'Zm00001eb104760' => 'zma', 'Zm00001eb148220' => 'zma', 'Zm00001eb259030' => 'zma', 'Zm00001eb289590' => 'zma', 'Zm00001eb420150' => 'zma' ), 'gf_id' => 'HOM05D000968', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000968' ), 'data_identifier' => 'HOM05D000968', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000968', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p31690' => 'bna', 'A03p36040' => 'bna', 'A03p53730' => 'bna', 'A04p01410' => 'bna', 'A05p05420' => 'bna', 'A05p39630' => 'bna', 'A05p39640' => 'bna', 'A09p00970' => 'bna', 'A09p53060' => 'bna', 'A10p31890' => 'bna', 'Aa31LG10G15040' => 'aar', 'Aa31LG1G21090' => 'aar', 'Aa31LG1G26900' => 'aar', 'Aa31LG3G1820' => 'aar', 'Aa31LG5G1100' => 'aar', 'Aa31LG6G4740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2265' => 'aag', 'Actinidia07998' => 'ach', 'Actinidia11266' => 'ach', 'Actinidia12682' => 'ach', 'Actinidia26479' => 'ach', 'Actinidia31406' => 'ach', 'Actinidia32437' => 'ach', 'Actinidia38862' => 'ach', 'Ah.05g174230' => 'amhyb', 'Ah.05g179070' => 'amhyb', 'Ah.05g179090' => 'amhyb', 'Ah.12g059950' => 'amhyb', 'AL3G20480' => 'aly', 'AL4G44520' => 'aly', 'AL5G43110' => 'aly', 'AL6G13890' => 'aly', 'AL6G52620' => 'aly', 'AL7G30830' => 'aly', 'Aqoxy1G00899' => 'aox', 'Aqoxy5G04333' => 'aox', 'Aqoxy7G00641' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3IZ0NN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4EF6AW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W9P8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79GA3M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C43NQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFCU6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G95YVJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCHK29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LU1UG8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX91RN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGB4B1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8DA0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9H7JI' => 'arhy', 'AT3G09320' => 'ath', 'AT3G60800' => 'ath', 'AT4G00840' => 'ath', 'AT4G22750' => 'ath', 'AT5G04270' => 'ath', 'ATR0090G003' => 'atr', 'ATR0559G349' => 'atr', 'ATR0680G261' => 'atr', 'ATR0810G048' => 'atr', 'Atru.chr12.831' => 'acertr', 'Atru.chr5.303' => 'acertr', 'Atru.chr5.748' => 'acertr', 'Atru.chr8.1999' => 'acertr', 'Atru.chr9.1436' => 'acertr', 'AUR62004211' => 'cqu', 'AUR62004548' => 'cqu', 'AUR62013637' => 'cqu', 'AUR62022662' => 'cqu', 'AUR62025777' => 'cqu', 'AUR62042386' => 'cqu', 'BcaB01g02310' => 'bca', 'BcaB01g06062' => 'bca', 'BcaB02g08975' => 'bca', 'BcaB02g08980' => 'bca', 'BcaC01g04228' => 'bca', 'BcaC01g06830' => 'bca', 'BcaC02g10186' => 'bca', 'BcaC02g12214' => 'bca', 'BcaC04g24101' => 'bca', 'BcaC05g29520' => 'bca', 'BcaC05g29661' => 'bca', 'BcaC06g32130' => 'bca', 'BcaC06g32131' => 'bca', 'BcaC07g40601' => 'bca', 'BcaC07g42641' => 'bca', 'BcaNung01038' => 'bca', 'BcaNung01676' => 'bca', 'BcaNung02480' => 'bca', 'BcaNung07376' => 'bca', 'BolC3t16146H' => 'bol', 'BolC3t16637H' => 'bol', 'BolC4t22257H' => 'bol', 'BolC4t24728H' => 'bol', 'BolC5t34517H' => 'bol', 'BolC7t45703H' => 'bol', 'BolC8t51166H' => 'bol', 'BolC9t53038H' => 'bol', 'BolC9t60000H' => 'bol', 'BraA01t01345Z' => 'bra', 'BraA01t01346Z' => 'bra', 'BraA01t01348Z' => 'bra', 'BraA03t12347Z' => 'bra', 'BraA03t12775Z' => 'bra', 'BraA03t14439Z' => 'bra', 'BraA04t15860Z' => 'bra', 'BraA05t19511Z' => 'bra', 'BraA05t22746Z' => 'bra', 'BraA09t35767Z' => 'bra', 'BraA09t40732Z' => 'bra', 'BraA10t45233Z' => 'bra', 'C03p38720' => 'bna', 'C03p43680' => 'bna', 'C04p06350' => 'bna', 'C04p31800' => 'bna', 'C05p58680' => 'bna', 'C07p52110' => 'bna', 'C08p35760' => 'bna', 'C09p01050' => 'bna', 'C09p72600' => 'bna', 'CAN.G106.2' => 'can', 'CAN.G1482.1' => 'can', 'CAN.G324.12' => 'can', 'CAN.G388.20' => 'can', 'CAN.G412.7' => 'can', 'CAN.G694.32' => 'can', 'CAN.G92.12' => 'can', 'CANSAT11G2353' => 'cansat', 'CANSAT21G1398' => 'cansat', 'CANSAT56G2456' => 'cansat', 'CANSAT56G3031' => 'cansat', 'CANSAT56G4539' => 'cansat', 'CARHR083680' => 'chi', 'CARHR171190' => 'chi', 'CARHR209010' => 'chi', 'CARHR229680' => 'chi', 'CARHR249490' => 'chi', 'Carub.0003s0844' => 'cru', 'Carub.0005s2755' => 'cru', 'Carub.0006s0322' => 'cru', 'Carub.0006s3586' => 'cru', 'Carub.0007s1855' => 'cru', 'Ca_07808_v3' => 'car', 'Ca_09535_v3' => 'car', 'Ca_10548_v3' => 'car', 'Ca_19913_v3' => 'car', 'Ca_19916_v3' => 'car', 'Ca_19975_v3' => 'car', 'CBR_g22876' => 'cbr', 'CBR_g22879' => 'cbr', 'CBR_g38491' => 'cbr', 'CBR_g54185' => 'cbr', 'CBR_g54190' => 'cbr', 'Cc02_g11020' => 'ccan', 'Cc02_g23920' => 'ccan', 'Cc02_g39860' => 'ccan', 'Cc02_g39870' => 'ccan', 'Cc03_g06760' => 'ccan', 'Cc06_g02450' => 'ccan', 'Cc09_g09450' => 'ccan', 'CDE02G1959' => 'cde', 'CDE04G0600' => 'cde', 'CDE07G1996' => 'cde', 'CDE07G2078' => 'cde', 'CDE11G0611' => 'cde', 'Cfa001683' => 'cfa', 'Cfa001734' => 'cfa', 'Cfa001737' => 'cfa', 'Cfa003751' => 'cfa', 'Cfa012019' => 'cfa', 'Cfa017353' => 'cfa', 'Cfa017732' => 'cfa', 'Cfa022464' => 'cfa', 'Ciclev10012400m.g' => 'ccl', 'Ciclev10021242m.g' => 'ccl', 'Ciclev10021302m.g' => 'ccl', 'Ciclev10021463m.g' => 'ccl', 'Ciclev10032359m.g' => 'ccl', 'CiPaw.01G081000' => 'cil', 'CiPaw.01G262500' => 'cil', 'CiPaw.01G269800' => 'cil', 'CiPaw.02G168400' => 'cil', 'CiPaw.05G119500' => 'cil', 'CiPaw.11G147300' => 'cil', 'ClCG01G003630' => 'cla', 'ClCG05G000510' => 'cla', 'ClCG05G002300' => 'cla', 'ClCG08G007650' => 'cla', 'ClCG10G021250' => 'cla', 'COL.COLO4_06218' => 'col', 'COL.COLO4_12538' => 'col', 'COL.COLO4_14775' => 'col', 'COL.COLO4_23875' => 'col', 'Cpa.g.sc141.16' => 'cpa', 'Cpa.g.sc169.16' => 'cpa', 'Cpa.g.sc244.4' => 'cpa', 'Cpa.g.sc244.5' => 'cpa', 'Cpa.g.sc29.87' => 'cpa', 'Cpa.g.sc53.115' => 'cpa', 'Cre03.g207502' => 'cre', 'Cre06.g277000' => 'cre', 'Cre09.g394050' => 'cre', 'CsaV3_3G007680' => 'csa', 'CsaV3_3G009710' => 'csa', 'CsaV3_3G034790' => 'csa', 'CsaV3_5G003750' => 'csa', 'CsaV3_6G036620' => 'csa', 'CSS0002288' => 'camsi', 'CSS0011250' => 'camsi', 'CSS0021619' => 'camsi', 'CSS0046701' => 'camsi', 'DCAR_006420' => 'dca', 'DCAR_006865' => 'dca', 'DCAR_008558' => 'dca', 'DCAR_028754' => 'dca', 'DCAR_028755' => 'dca', 'Dinv31218' => 'din', 'Dinv32371' => 'din', 'Dinv34250' => 'din', 'Dinv37156' => 'din', 'Dinv43704' => 'din', 'Duzib093G1811' => 'dzi', 'Duzib106G1622' => 'dzi', 'Duzib114G0504' => 'dzi', 'Duzib128G0338' => 'dzi', 'Duzib128G1577' => 'dzi', 'Duzib133G0104' => 'dzi', 'Duzib133G1080' => 'dzi', 'Duzib138G0324' => 'dzi', 'Duzib138G0394' => 'dzi', 'Duzib205G0122' => 'dzi', 'Duzib268G1020' => 'dzi', 'Duzib268G1359' => 'dzi', 'ECA232G3929' => 'eca', 'ECA236G2210' => 'eca', 'ECA236G2287' => 'eca', 'ECA240G4568' => 'eca', 'ECA247G0894' => 'eca', 'EL10Ac1g00200' => 'bvu', 'EL10Ac1g00886' => 'bvu', 'EL10As1g23091' => 'bvu', 'EL10As1g23092' => 'bvu', 'Eucgr.A01284' => 'egr', 'Eucgr.A01285' => 'egr', 'Eucgr.D02456' => 'egr', 'Eucgr.E00018' => 'egr', 'Eucgr.E01439' => 'egr', 'Eucgr.G02859' => 'egr', 'FAN01G0168' => 'fan', 'FAN01G0453' => 'fan', 'FAN01G2761' => 'fan', 'FAN02G1239' => 'fan', 'FAN03G0645' => 'fan', 'FAN03G2707' => 'fan', 'FAN03G2978' => 'fan', 'FAN04G0227' => 'fan', 'FAN06G0091' => 'fan', 'FAN06G1418' => 'fan', 'FAN06G1512' => 'fan', 'FAN06G1986' => 'fan', 'FAN06G2905' => 'fan', 'FAN06G4325' => 'fan', 'FAN08G0033' => 'fan', 'FAN09G0642' => 'fan', 'FAN10G1763' => 'fan', 'FAN10G2026' => 'fan', 'FAN10G2513' => 'fan', 'FAN10G3402' => 'fan', 'FAN10G3564' => 'fan', 'FAN10G3987' => 'fan', 'FAN13G1490' => 'fan', 'FAN14G5857' => 'fan', 'FAN18G1188' => 'fan', 'FvH4_5g00750' => 'fve', 'FvH4_6g13410' => 'fve', 'FvH4_7g11740' => 'fve', 'FvH4_7g17410' => 'fve', 'FvH4_7g18860' => 'fve', 'Glyma.01G099100' => 'gma', 'Glyma.01G142300' => 'gma', 'Glyma.03G025500' => 'gma', 'Glyma.03G069700' => 'gma', 'Glyma.03G260000' => 'gma', 'Glyma.09G269800' => 'gma', 'Glyma.10G208700' => 'gma', 'Glyma.18G220400' => 'gma', 'Glyma.20G182000' => 'gma', 'Gohir.A01G221726' => 'ghi', 'Gohir.A07G134600' => 'ghi', 'Gohir.A07G146000' => 'ghi', 'Gohir.A08G173900' => 'ghi', 'Gohir.A09G194900' => 'ghi', 'Gohir.A10G204100' => 'ghi', 'Gohir.A11G080600' => 'ghi', 'Gohir.A11G327500' => 'ghi', 'Gohir.A12G101800' => 'ghi', 'Gohir.D01G211200' => 'ghi', 'Gohir.D07G139200' => 'ghi', 'Gohir.D07G152100' => 'ghi', 'Gohir.D08G192600' => 'ghi', 'Gohir.D09G189200' => 'ghi', 'Gohir.D10G212000' => 'ghi', 'Gohir.D11G085200' => 'ghi', 'Gohir.D11G346400' => 'ghi', 'Gohir.D12G104800' => 'ghi', 'Gorai.001G151300' => 'gra', 'Gorai.001G174100' => 'gra', 'Gorai.002G257000' => 'gra', 'Gorai.004G202600' => 'gra', 'Gorai.007G090900' => 'gra', 'Gorai.007G376700' => 'gra', 'Gorai.008G114100' => 'gra', 'Gorai.011G237900' => 'gra', 'GSVIVG01005450001' => 'vvi', 'GSVIVG01016232001' => 'vvi', 'GSVIVG01026157001' => 'vvi', 'GSVIVG01027419001' => 'vvi', 'GSVIVG01027631001' => 'vvi', 'GSVIVG01034143001' => 'vvi', 'HanXRQChr03g0093921' => 'han', 'HanXRQChr04g0120001' => 'han', 'HanXRQChr04g0122561' => 'han', 'HanXRQChr09g0246851' => 'han', 'HanXRQChr10g0293311' => 'han', 'HanXRQChr13g0425231' => 'han', 'HanXRQChr16g0532571' => 'han', 'Haze_09050' => 'cav', 'Haze_15715' => 'cav', 'Haze_15716' => 'cav', 'Haze_16803' => 'cav', 'Haze_16850' => 'cav', 'Hma1.2p1_0301F.1_g118655' => 'hma', 'Hma1.2p1_0309F.1_g120590' => 'hma', 'Hma1.2p1_0936F.1_g238900' => 'hma', 'Hma1.2p1_3552F.1_g336740' => 'hma', 'HPP92_003520' => 'vpl', 'HPP92_006628' => 'vpl', 'HPP92_006645' => 'vpl', 'HPP92_014669' => 'vpl', 'HPP92_015077' => 'vpl', 'Hund16742' => 'sun', 'Hund17022' => 'sun', 'Lalb_Chr02g0152131' => 'lal', 'Lalb_Chr05g0225371' => 'lal', 'Lalb_Chr07g0189841' => 'lal', 'Lalb_Chr07g0192961' => 'lal', 'Lalb_Chr12g0208221' => 'lal', 'Lalb_Chr13g0291211' => 'lal', 'Lalb_Chr13g0291781' => 'lal', 'Lalb_Chr18g0044651' => 'lal', 'Lalb_Chr21g0313731' => 'lal', 'Lj1g0022533' => 'lja', 'Lj2A18T50' => 'lonja', 'Lj2A92G93' => 'lonja', 'Lj3A965T73' => 'lonja', 'Lj3g0000673' => 'lja', 'Lj3g0002666' => 'lja', 'Lj4g0016985' => 'lja', 'Lj5g0003625' => 'lja', 'Lj7A529G36' => 'lonja', 'Lj9A569T49' => 'lonja', 'Lj9A604T63' => 'lonja', 'Lsat_1_v5_gn_3_132060' => 'lsa', 'Lsat_1_v5_gn_4_68941' => 'lsa', 'Lsat_1_v5_gn_5_95580' => 'lsa', 'Lsat_1_v5_gn_7_161' => 'lsa', 'Lsat_1_v5_gn_7_7041' => 'lsa', 'Lsat_1_v5_gn_9_33481' => 'lsa', 'Lsat_1_v5_gn_9_68260' => 'lsa', 'Manes.01G073100' => 'mes', 'Manes.01G266300' => 'mes', 'Manes.02G033300' => 'mes', 'Manes.05G017900' => 'mes', 'Manes.05G046100' => 'mes', 'Manes.08G080900' => 'mes', 'Manes.10G049400' => 'mes', 'Mapoly0009s0186' => 'mpo', 'Mapoly0036s0118' => 'mpo', 'Mapoly0101s0046' => 'mpo', 'MBI04_g30218_MAGBIO' => 'mbi', 'MBI04_g35564_MAGBIO' => 'mbi', 'MBI12_g34011_MAGBIO' => 'mbi', 'MBI14_g04655_MAGBIO' => 'mbi', 'MCO07G653' => 'mco', 'MCO10G173' => 'mco', 'MD01G1087100' => 'mdo', 'MD01G1104200' => 'mdo', 'MD02G1205100' => 'mdo', 'MD04G1079200' => 'mdo', 'MD04G1131400' => 'mdo', 'MD07G1121600' => 'mdo', 'MD07G1157300' => 'mdo', 'MD07G1171000' => 'mdo', 'MD12G1144500' => 'mdo', 'Medtr1g094610' => 'mtr', 'Medtr4g021795' => 'mtr', 'Medtr4g023760' => 'mtr', 'Medtr7g118050' => 'mtr', 'MELO3C005582.2' => 'cme', 'MELO3C005989.2' => 'cme', 'MELO3C006192.2' => 'cme', 'MELO3C009248.2' => 'cme', 'MELO3C019817.2' => 'cme', 'Migut.B01625' => 'egut', 'Migut.B01915' => 'egut', 'Migut.F01721' => 'egut', 'Migut.J00314' => 'egut', 'MSTRG.20742' => 'ama', 'MSTRG.8134' => 'ama', 'Nitab4.5_0000096g0010' => 'nta', 'Nitab4.5_0000202g0030' => 'nta', 'Nitab4.5_0000216g0370' => 'nta', 'Nitab4.5_0000457g0230' => 'nta', 'Nitab4.5_0001702g0170' => 'nta', 'Nitab4.5_0003607g0010' => 'nta', 'Nitab4.5_0004917g0020' => 'nta', 'Nitab4.5_0007059g0010' => 'nta', 'Nitab4.5_0007184g0010' => 'nta', 'Nitab4.5_0007346g0020' => 'nta', 'Nn1g00410' => 'nnu', 'Nn1g01252' => 'nnu', 'Nn2g11168' => 'nnu', 'Nn2g13403' => 'nnu', 'Nn2g13760' => 'nnu', 'Nn4g26380' => 'nnu', 'Oeu000806.2' => 'oeu', 'Oeu005788.1' => 'oeu', 'Oeu006900.3' => 'oeu', 'Oeu007797.1' => 'oeu', 'Oeu011932.1' => 'oeu', 'Oeu022739.1' => 'oeu', 'Oeu037918.1' => 'oeu', 'Oeu055490.2' => 'oeu', 'Os01g0844400' => 'osa', 'Os02g0819100' => 'osa', 'Os03g0804300' => 'osa', 'Os05g0458000' => 'osa', 'Os07g0467800' => 'osa', 'Os12g0602200' => 'osa', 'Peaxi162Scf00013g03444' => 'pax', 'Peaxi162Scf00094g01120' => 'pax', 'Peaxi162Scf00191g01211' => 'pax', 'Peaxi162Scf00238g01110' => 'pax', 'Peaxi162Scf00330g00719' => 'pax', 'Peaxi162Scf00627g00018' => 'pax', 'PGR031G2686' => 'pgr', 'PGR042G0809' => 'pgr', 'PGR142G0193' => 'pgr', 'PGSC0003DMG400011066' => 'stu', 'PGSC0003DMG400012041' => 'stu', 'PGSC0003DMG400013678' => 'stu', 'PGSC0003DMG400023477' => 'stu', 'PGSC0003DMG400025956' => 'stu', 'PGSC0003DMG401019151' => 'stu', 'Phvul.006G116400' => 'pvu', 'Phvul.007G097300' => 'pvu', 'Phvul.010G015000' => 'pvu', 'Phvul.010G083900' => 'pvu', 'Potri.001G117100' => 'ptr', 'Potri.002G147300' => 'ptr', 'Potri.003G115600' => 'ptr', 'Potri.006G087400' => 'ptr', 'Potri.010G226100' => 'ptr', 'Potri.014G069200' => 'ptr', 'Potri.014G104000' => 'ptr', 'Potri.016G100200' => 'ptr', 'Pp3c10_20450' => 'ppa', 'Pp3c1_42400' => 'ppa', 'Pp3c3_24390' => 'ppa', 'Pp3c3_2860' => 'ppa', 'PRCOL_00003193' => 'pco', 'Prupe.2G144500' => 'ppe', 'Prupe.2G195700' => 'ppe', 'Prupe.2G209800' => 'ppe', 'Prupe.5G080000' => 'ppe', 'Prupe.6G257900' => 'ppe', 'Psat3g001160' => 'psa', 'Psat6g181880' => 'psa', 'Psat7g233720' => 'psa', 'PSO063G7587' => 'pso', 'PSO339G2145' => 'pso', 'PSO339G3369' => 'pso', 'PSO478G2747' => 'pso', 'PSO513G0140' => 'pso', 'PSO782G1614' => 'pso', 'PSO782G4889' => 'pso', 'PSO782G5485' => 'pso', 'PSO801G0241' => 'pso', 'QL07p048854' => 'qlo', 'QL08p046745' => 'qlo', 'QL08p052606' => 'qlo', 'QL08p053414' => 'qlo', 'QL08p054868' => 'qlo', 'RcHm_v2.0_Chr1g0350251' => 'rch', 'RcHm_v2.0_Chr1g0360851' => 'rch', 'RcHm_v2.0_Chr1g0362791' => 'rch', 'RcHm_v2.0_Chr3g0466281' => 'rch', 'RcHm_v2.0_Chr7g0201481' => 'rch', 'Rhsim01G0148600' => 'rsi', 'Rhsim05G0194400' => 'rsi', 'Rhsim07G0000700' => 'rsi', 'Rhsim07G0000800' => 'rsi', 'Rhsim07G0027900' => 'rsi', 'Rhsim09G0149500' => 'rsi', 'RhsimUnG0186900' => 'rsi', 'Sabra01G0089900' => 'sbr', 'Sabra02G0114700' => 'sbr', 'Sabra02G0116300' => 'sbr', 'Sabra03G0080100' => 'sbr', 'Sabra08G0024300' => 'sbr', 'Sabra10G0174300' => 'sbr', 'Sabra14G0048900' => 'sbr', 'Sabra14G0076500' => 'sbr', 'SalBow5G2513' => 'sbo', 'Sc01g0002300' => 'sci', 'Sc01g0004450' => 'sci', 'Sc06g0001680' => 'sci', 'Sc23g0003580' => 'sci', 'Sed0000913' => 'sed', 'Sed0001655' => 'sed', 'Sed0007745' => 'sed', 'Sed0010951' => 'sed', 'Sed0017599' => 'sed', 'Sed0021405' => 'sed', 'Sed0022810' => 'sed', 'SEGI_07099' => 'sgi', 'SEGI_11931' => 'sgi', 'SEGI_13187' => 'sgi', 'SEGI_29958' => 'sgi', 'SEGI_36351' => 'sgi', 'SGA_v2.0_scaffold126G33770' => 'sas', 'SGA_v2.0_scaffold153G37003' => 'sas', 'SGA_v2.0_scaffold2G01359' => 'sas', 'SGA_v2.0_scaffold5G03064' => 'sas', 'SGA_v2.0_scaffold95G28903' => 'sas', 'SHI12701' => 'shi', 'SHI26410' => 'shi', 'SHI38997' => 'shi', 'SHI53759' => 'shi', 'SHI53886' => 'shi', 'SHI54714' => 'shi', 'SMO011G0041' => 'smo', 'SMO146G0251' => 'smo', 'SMO160G0004' => 'smo', 'SMO174G0057' => 'smo', 'SMO244G0089' => 'smo', 'SMO296G0011' => 'smo', 'Solyc01g091280.3' => 'sly', 'Solyc05g047610.3' => 'sly', 'Solyc05g047640.3' => 'sly', 'Solyc05g055630.3' => 'sly', 'Solyc10g018160.2' => 'sly', 'Solyc10g084820.2' => 'sly', 'Solyc10g086565.2' => 'sly', 'Sopen01g037030' => 'spe', 'Sopen05g027920' => 'spe', 'Sopen05g034070' => 'spe', 'Sopen10g007260' => 'spe', 'Sopen10g034260' => 'spe', 'Sopen10g035950' => 'spe', 'Sp3g07710' => 'spa', 'Sp4g27420' => 'spa', 'Sp5g02450' => 'spa', 'Sp6g01280' => 'spa', 'Sp6g38480' => 'spa', 'Sp7g20780' => 'spa', 'TAR374G1413' => 'tar', 'TAR623G1777' => 'tar', 'TAR629G2370' => 'tar', 'TAR633G1759' => 'tar', 'TAR636G3387' => 'tar', 'THA.LOC104802447' => 'tha', 'THA.LOC104813916' => 'tha', 'THA.LOC104816423' => 'tha', 'THA.LOC104817246' => 'tha', 'THA.LOC104825895' => 'tha', 'Thecc.01G335200' => 'tca', 'Thecc.01G377400' => 'tca', 'Thecc.03G262200' => 'tca', 'Thecc.05G036800' => 'tca', 'Thecc.10G080500' => 'tca', 'Thecc.10G080800' => 'tca', 'Thhalv10001560m.g' => 'esa', 'Thhalv10006120m.g' => 'esa', 'Thhalv10014375m.g' => 'esa', 'Thhalv10021264m.g' => 'esa', 'Thhalv10028856m.g' => 'esa', 'TPR.G1914' => 'tpr', 'TPR.G4757' => 'tpr', 'TPR.G5595' => 'tpr', 'TWI14G0952' => 'twi', 'TWI14G1307' => 'twi', 'TWI38G2143' => 'twi', 'TWI59G0826' => 'twi', 'TWI77G0527' => 'twi', 'TWI81G0150' => 'twi', 'unitig_21.g21018' => 'ugi', 'unitig_26.g9725' => 'ugi', 'unitig_744.g24653' => 'ugi', 'unitig_749.g13778' => 'ugi', 'unitig_899.g15035' => 'ugi', 'vmacro04296' => 'vma', 'vmacro04852' => 'vma', 'vmacro13404' => 'vma', 'vmacro20169' => 'vma', 'vmacro21014' => 'vma', 'VMungo0331G0237' => 'vmu', 'VMungo0331G0706' => 'vmu', 'VMungo0331G1361' => 'vmu', 'VMungo0331G1489' => 'vmu', 'VMungo0540G1037' => 'vmu', 'VMungo0720G2487' => 'vmu', 'VMungo0720G2721' => 'vmu', 'Zm00001eb086860' => 'zma', 'Zm00001eb104760' => 'zma', 'Zm00001eb148220' => 'zma', 'Zm00001eb259030' => 'zma', 'Zm00001eb289590' => 'zma', 'Zm00001eb420150' => 'zma' ) $gf_id = 'HOM05D000968' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000968' ) $data_identifier = 'HOM05D000968' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 19, 'bol' => (int) 9, 'bra' => (int) 12, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 5, 'ccan' => (int) 7, 'cde' => (int) 5, 'cfa' => (int) 8, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 4, 'dca' => (int) 5, 'din' => (int) 5, 'dzi' => (int) 12, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 25, 'fve' => (int) 5, 'gma' => (int) 9, 'ghi' => (int) 18, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 7, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 5, 'sun' => (int) 2, 'lal' => (int) 9, 'lja' => (int) 5, 'lonja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 9, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 2, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 3, 'stu' => (int) 6, 'pvu' => (int) 4, 'ptr' => (int) 8, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 3, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 1, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 5, 'sas' => (int) 5, 'shi' => (int) 6, 'smo' => (int) 6, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 3, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420150' $species_info = array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ) $local_species = 'sbo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000968', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p31690' => 'bna', 'A03p36040' => 'bna', 'A03p53730' => 'bna', 'A04p01410' => 'bna', 'A05p05420' => 'bna', 'A05p39630' => 'bna', 'A05p39640' => 'bna', 'A09p00970' => 'bna', 'A09p53060' => 'bna', 'A10p31890' => 'bna', 'Aa31LG10G15040' => 'aar', 'Aa31LG1G21090' => 'aar', 'Aa31LG1G26900' => 'aar', 'Aa31LG3G1820' => 'aar', 'Aa31LG5G1100' => 'aar', 'Aa31LG6G4740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2265' => 'aag', 'Actinidia07998' => 'ach', 'Actinidia11266' => 'ach', 'Actinidia12682' => 'ach', 'Actinidia26479' => 'ach', 'Actinidia31406' => 'ach', 'Actinidia32437' => 'ach', 'Actinidia38862' => 'ach', 'Ah.05g174230' => 'amhyb', 'Ah.05g179070' => 'amhyb', 'Ah.05g179090' => 'amhyb', 'Ah.12g059950' => 'amhyb', 'AL3G20480' => 'aly', 'AL4G44520' => 'aly', 'AL5G43110' => 'aly', 'AL6G13890' => 'aly', 'AL6G52620' => 'aly', 'AL7G30830' => 'aly', 'Aqoxy1G00899' => 'aox', 'Aqoxy5G04333' => 'aox', 'Aqoxy7G00641' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3IZ0NN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4EF6AW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W9P8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79GA3M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C43NQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFCU6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G95YVJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCHK29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LU1UG8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX91RN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGB4B1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8DA0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9H7JI' => 'arhy', 'AT3G09320' => 'ath', 'AT3G60800' => 'ath', 'AT4G00840' => 'ath', 'AT4G22750' => 'ath', 'AT5G04270' => 'ath', 'ATR0090G003' => 'atr', 'ATR0559G349' => 'atr', 'ATR0680G261' => 'atr', 'ATR0810G048' => 'atr', 'Atru.chr12.831' => 'acertr', 'Atru.chr5.303' => 'acertr', 'Atru.chr5.748' => 'acertr', 'Atru.chr8.1999' => 'acertr', 'Atru.chr9.1436' => 'acertr', 'AUR62004211' => 'cqu', 'AUR62004548' => 'cqu', 'AUR62013637' => 'cqu', 'AUR62022662' => 'cqu', 'AUR62025777' => 'cqu', 'AUR62042386' => 'cqu', 'BcaB01g02310' => 'bca', 'BcaB01g06062' => 'bca', 'BcaB02g08975' => 'bca', 'BcaB02g08980' => 'bca', 'BcaC01g04228' => 'bca', 'BcaC01g06830' => 'bca', 'BcaC02g10186' => 'bca', 'BcaC02g12214' => 'bca', 'BcaC04g24101' => 'bca', 'BcaC05g29520' => 'bca', 'BcaC05g29661' => 'bca', 'BcaC06g32130' => 'bca', 'BcaC06g32131' => 'bca', 'BcaC07g40601' => 'bca', 'BcaC07g42641' => 'bca', 'BcaNung01038' => 'bca', 'BcaNung01676' => 'bca', 'BcaNung02480' => 'bca', 'BcaNung07376' => 'bca', 'BolC3t16146H' => 'bol', 'BolC3t16637H' => 'bol', 'BolC4t22257H' => 'bol', 'BolC4t24728H' => 'bol', 'BolC5t34517H' => 'bol', 'BolC7t45703H' => 'bol', 'BolC8t51166H' => 'bol', 'BolC9t53038H' => 'bol', 'BolC9t60000H' => 'bol', 'BraA01t01345Z' => 'bra', 'BraA01t01346Z' => 'bra', 'BraA01t01348Z' => 'bra', 'BraA03t12347Z' => 'bra', 'BraA03t12775Z' => 'bra', 'BraA03t14439Z' => 'bra', 'BraA04t15860Z' => 'bra', 'BraA05t19511Z' => 'bra', 'BraA05t22746Z' => 'bra', 'BraA09t35767Z' => 'bra', 'BraA09t40732Z' => 'bra', 'BraA10t45233Z' => 'bra', 'C03p38720' => 'bna', 'C03p43680' => 'bna', 'C04p06350' => 'bna', 'C04p31800' => 'bna', 'C05p58680' => 'bna', 'C07p52110' => 'bna', 'C08p35760' => 'bna', 'C09p01050' => 'bna', 'C09p72600' => 'bna', 'CAN.G106.2' => 'can', 'CAN.G1482.1' => 'can', 'CAN.G324.12' => 'can', 'CAN.G388.20' => 'can', 'CAN.G412.7' => 'can', 'CAN.G694.32' => 'can', 'CAN.G92.12' => 'can', 'CANSAT11G2353' => 'cansat', 'CANSAT21G1398' => 'cansat', 'CANSAT56G2456' => 'cansat', 'CANSAT56G3031' => 'cansat', 'CANSAT56G4539' => 'cansat', 'CARHR083680' => 'chi', 'CARHR171190' => 'chi', 'CARHR209010' => 'chi', 'CARHR229680' => 'chi', 'CARHR249490' => 'chi', 'Carub.0003s0844' => 'cru', 'Carub.0005s2755' => 'cru', 'Carub.0006s0322' => 'cru', 'Carub.0006s3586' => 'cru', 'Carub.0007s1855' => 'cru', 'Ca_07808_v3' => 'car', 'Ca_09535_v3' => 'car', 'Ca_10548_v3' => 'car', 'Ca_19913_v3' => 'car', 'Ca_19916_v3' => 'car', 'Ca_19975_v3' => 'car', 'CBR_g22876' => 'cbr', 'CBR_g22879' => 'cbr', 'CBR_g38491' => 'cbr', 'CBR_g54185' => 'cbr', 'CBR_g54190' => 'cbr', 'Cc02_g11020' => 'ccan', 'Cc02_g23920' => 'ccan', 'Cc02_g39860' => 'ccan', 'Cc02_g39870' => 'ccan', 'Cc03_g06760' => 'ccan', 'Cc06_g02450' => 'ccan', 'Cc09_g09450' => 'ccan', 'CDE02G1959' => 'cde', 'CDE04G0600' => 'cde', 'CDE07G1996' => 'cde', 'CDE07G2078' => 'cde', 'CDE11G0611' => 'cde', 'Cfa001683' => 'cfa', 'Cfa001734' => 'cfa', 'Cfa001737' => 'cfa', 'Cfa003751' => 'cfa', 'Cfa012019' => 'cfa', 'Cfa017353' => 'cfa', 'Cfa017732' => 'cfa', 'Cfa022464' => 'cfa', 'Ciclev10012400m.g' => 'ccl', 'Ciclev10021242m.g' => 'ccl', 'Ciclev10021302m.g' => 'ccl', 'Ciclev10021463m.g' => 'ccl', 'Ciclev10032359m.g' => 'ccl', 'CiPaw.01G081000' => 'cil', 'CiPaw.01G262500' => 'cil', 'CiPaw.01G269800' => 'cil', 'CiPaw.02G168400' => 'cil', 'CiPaw.05G119500' => 'cil', 'CiPaw.11G147300' => 'cil', 'ClCG01G003630' => 'cla', 'ClCG05G000510' => 'cla', 'ClCG05G002300' => 'cla', 'ClCG08G007650' => 'cla', 'ClCG10G021250' => 'cla', 'COL.COLO4_06218' => 'col', 'COL.COLO4_12538' => 'col', 'COL.COLO4_14775' => 'col', 'COL.COLO4_23875' => 'col', 'Cpa.g.sc141.16' => 'cpa', 'Cpa.g.sc169.16' => 'cpa', 'Cpa.g.sc244.4' => 'cpa', 'Cpa.g.sc244.5' => 'cpa', 'Cpa.g.sc29.87' => 'cpa', 'Cpa.g.sc53.115' => 'cpa', 'Cre03.g207502' => 'cre', 'Cre06.g277000' => 'cre', 'Cre09.g394050' => 'cre', 'CsaV3_3G007680' => 'csa', 'CsaV3_3G009710' => 'csa', 'CsaV3_3G034790' => 'csa', 'CsaV3_5G003750' => 'csa', 'CsaV3_6G036620' => 'csa', 'CSS0002288' => 'camsi', 'CSS0011250' => 'camsi', 'CSS0021619' => 'camsi', 'CSS0046701' => 'camsi', 'DCAR_006420' => 'dca', 'DCAR_006865' => 'dca', 'DCAR_008558' => 'dca', 'DCAR_028754' => 'dca', 'DCAR_028755' => 'dca', 'Dinv31218' => 'din', 'Dinv32371' => 'din', 'Dinv34250' => 'din', 'Dinv37156' => 'din', 'Dinv43704' => 'din', 'Duzib093G1811' => 'dzi', 'Duzib106G1622' => 'dzi', 'Duzib114G0504' => 'dzi', 'Duzib128G0338' => 'dzi', 'Duzib128G1577' => 'dzi', 'Duzib133G0104' => 'dzi', 'Duzib133G1080' => 'dzi', 'Duzib138G0324' => 'dzi', 'Duzib138G0394' => 'dzi', 'Duzib205G0122' => 'dzi', 'Duzib268G1020' => 'dzi', 'Duzib268G1359' => 'dzi', 'ECA232G3929' => 'eca', 'ECA236G2210' => 'eca', 'ECA236G2287' => 'eca', 'ECA240G4568' => 'eca', 'ECA247G0894' => 'eca', 'EL10Ac1g00200' => 'bvu', 'EL10Ac1g00886' => 'bvu', 'EL10As1g23091' => 'bvu', 'EL10As1g23092' => 'bvu', 'Eucgr.A01284' => 'egr', 'Eucgr.A01285' => 'egr', 'Eucgr.D02456' => 'egr', 'Eucgr.E00018' => 'egr', 'Eucgr.E01439' => 'egr', 'Eucgr.G02859' => 'egr', 'FAN01G0168' => 'fan', 'FAN01G0453' => 'fan', 'FAN01G2761' => 'fan', 'FAN02G1239' => 'fan', 'FAN03G0645' => 'fan', 'FAN03G2707' => 'fan', 'FAN03G2978' => 'fan', 'FAN04G0227' => 'fan', 'FAN06G0091' => 'fan', 'FAN06G1418' => 'fan', 'FAN06G1512' => 'fan', 'FAN06G1986' => 'fan', 'FAN06G2905' => 'fan', 'FAN06G4325' => 'fan', 'FAN08G0033' => 'fan', 'FAN09G0642' => 'fan', 'FAN10G1763' => 'fan', 'FAN10G2026' => 'fan', 'FAN10G2513' => 'fan', 'FAN10G3402' => 'fan', 'FAN10G3564' => 'fan', 'FAN10G3987' => 'fan', 'FAN13G1490' => 'fan', 'FAN14G5857' => 'fan', 'FAN18G1188' => 'fan', 'FvH4_5g00750' => 'fve', 'FvH4_6g13410' => 'fve', 'FvH4_7g11740' => 'fve', 'FvH4_7g17410' => 'fve', 'FvH4_7g18860' => 'fve', 'Glyma.01G099100' => 'gma', 'Glyma.01G142300' => 'gma', 'Glyma.03G025500' => 'gma', 'Glyma.03G069700' => 'gma', 'Glyma.03G260000' => 'gma', 'Glyma.09G269800' => 'gma', 'Glyma.10G208700' => 'gma', 'Glyma.18G220400' => 'gma', 'Glyma.20G182000' => 'gma', 'Gohir.A01G221726' => 'ghi', 'Gohir.A07G134600' => 'ghi', 'Gohir.A07G146000' => 'ghi', 'Gohir.A08G173900' => 'ghi', 'Gohir.A09G194900' => 'ghi', 'Gohir.A10G204100' => 'ghi', 'Gohir.A11G080600' => 'ghi', 'Gohir.A11G327500' => 'ghi', 'Gohir.A12G101800' => 'ghi', 'Gohir.D01G211200' => 'ghi', 'Gohir.D07G139200' => 'ghi', 'Gohir.D07G152100' => 'ghi', 'Gohir.D08G192600' => 'ghi', 'Gohir.D09G189200' => 'ghi', 'Gohir.D10G212000' => 'ghi', 'Gohir.D11G085200' => 'ghi', 'Gohir.D11G346400' => 'ghi', 'Gohir.D12G104800' => 'ghi', 'Gorai.001G151300' => 'gra', 'Gorai.001G174100' => 'gra', 'Gorai.002G257000' => 'gra', 'Gorai.004G202600' => 'gra', 'Gorai.007G090900' => 'gra', 'Gorai.007G376700' => 'gra', 'Gorai.008G114100' => 'gra', 'Gorai.011G237900' => 'gra', 'GSVIVG01005450001' => 'vvi', 'GSVIVG01016232001' => 'vvi', 'GSVIVG01026157001' => 'vvi', 'GSVIVG01027419001' => 'vvi', 'GSVIVG01027631001' => 'vvi', 'GSVIVG01034143001' => 'vvi', 'HanXRQChr03g0093921' => 'han', 'HanXRQChr04g0120001' => 'han', 'HanXRQChr04g0122561' => 'han', 'HanXRQChr09g0246851' => 'han', 'HanXRQChr10g0293311' => 'han', 'HanXRQChr13g0425231' => 'han', 'HanXRQChr16g0532571' => 'han', 'Haze_09050' => 'cav', 'Haze_15715' => 'cav', 'Haze_15716' => 'cav', 'Haze_16803' => 'cav', 'Haze_16850' => 'cav', 'Hma1.2p1_0301F.1_g118655' => 'hma', 'Hma1.2p1_0309F.1_g120590' => 'hma', 'Hma1.2p1_0936F.1_g238900' => 'hma', 'Hma1.2p1_3552F.1_g336740' => 'hma', 'HPP92_003520' => 'vpl', 'HPP92_006628' => 'vpl', 'HPP92_006645' => 'vpl', 'HPP92_014669' => 'vpl', 'HPP92_015077' => 'vpl', 'Hund16742' => 'sun', 'Hund17022' => 'sun', 'Lalb_Chr02g0152131' => 'lal', 'Lalb_Chr05g0225371' => 'lal', 'Lalb_Chr07g0189841' => 'lal', 'Lalb_Chr07g0192961' => 'lal', 'Lalb_Chr12g0208221' => 'lal', 'Lalb_Chr13g0291211' => 'lal', 'Lalb_Chr13g0291781' => 'lal', 'Lalb_Chr18g0044651' => 'lal', 'Lalb_Chr21g0313731' => 'lal', 'Lj1g0022533' => 'lja', 'Lj2A18T50' => 'lonja', 'Lj2A92G93' => 'lonja', 'Lj3A965T73' => 'lonja', 'Lj3g0000673' => 'lja', 'Lj3g0002666' => 'lja', 'Lj4g0016985' => 'lja', 'Lj5g0003625' => 'lja', 'Lj7A529G36' => 'lonja', 'Lj9A569T49' => 'lonja', 'Lj9A604T63' => 'lonja', 'Lsat_1_v5_gn_3_132060' => 'lsa', 'Lsat_1_v5_gn_4_68941' => 'lsa', 'Lsat_1_v5_gn_5_95580' => 'lsa', 'Lsat_1_v5_gn_7_161' => 'lsa', 'Lsat_1_v5_gn_7_7041' => 'lsa', 'Lsat_1_v5_gn_9_33481' => 'lsa', 'Lsat_1_v5_gn_9_68260' => 'lsa', 'Manes.01G073100' => 'mes', 'Manes.01G266300' => 'mes', 'Manes.02G033300' => 'mes', 'Manes.05G017900' => 'mes', 'Manes.05G046100' => 'mes', 'Manes.08G080900' => 'mes', 'Manes.10G049400' => 'mes', 'Mapoly0009s0186' => 'mpo', 'Mapoly0036s0118' => 'mpo', 'Mapoly0101s0046' => 'mpo', 'MBI04_g30218_MAGBIO' => 'mbi', 'MBI04_g35564_MAGBIO' => 'mbi', 'MBI12_g34011_MAGBIO' => 'mbi', 'MBI14_g04655_MAGBIO' => 'mbi', 'MCO07G653' => 'mco', 'MCO10G173' => 'mco', 'MD01G1087100' => 'mdo', 'MD01G1104200' => 'mdo', 'MD02G1205100' => 'mdo', 'MD04G1079200' => 'mdo', 'MD04G1131400' => 'mdo', 'MD07G1121600' => 'mdo', 'MD07G1157300' => 'mdo', 'MD07G1171000' => 'mdo', 'MD12G1144500' => 'mdo', 'Medtr1g094610' => 'mtr', 'Medtr4g021795' => 'mtr', 'Medtr4g023760' => 'mtr', 'Medtr7g118050' => 'mtr', 'MELO3C005582.2' => 'cme', 'MELO3C005989.2' => 'cme', 'MELO3C006192.2' => 'cme', 'MELO3C009248.2' => 'cme', 'MELO3C019817.2' => 'cme', 'Migut.B01625' => 'egut', 'Migut.B01915' => 'egut', 'Migut.F01721' => 'egut', 'Migut.J00314' => 'egut', 'MSTRG.20742' => 'ama', 'MSTRG.8134' => 'ama', 'Nitab4.5_0000096g0010' => 'nta', 'Nitab4.5_0000202g0030' => 'nta', 'Nitab4.5_0000216g0370' => 'nta', 'Nitab4.5_0000457g0230' => 'nta', 'Nitab4.5_0001702g0170' => 'nta', 'Nitab4.5_0003607g0010' => 'nta', 'Nitab4.5_0004917g0020' => 'nta', 'Nitab4.5_0007059g0010' => 'nta', 'Nitab4.5_0007184g0010' => 'nta', 'Nitab4.5_0007346g0020' => 'nta', 'Nn1g00410' => 'nnu', 'Nn1g01252' => 'nnu', 'Nn2g11168' => 'nnu', 'Nn2g13403' => 'nnu', 'Nn2g13760' => 'nnu', 'Nn4g26380' => 'nnu', 'Oeu000806.2' => 'oeu', 'Oeu005788.1' => 'oeu', 'Oeu006900.3' => 'oeu', 'Oeu007797.1' => 'oeu', 'Oeu011932.1' => 'oeu', 'Oeu022739.1' => 'oeu', 'Oeu037918.1' => 'oeu', 'Oeu055490.2' => 'oeu', 'Os01g0844400' => 'osa', 'Os02g0819100' => 'osa', 'Os03g0804300' => 'osa', 'Os05g0458000' => 'osa', 'Os07g0467800' => 'osa', 'Os12g0602200' => 'osa', 'Peaxi162Scf00013g03444' => 'pax', 'Peaxi162Scf00094g01120' => 'pax', 'Peaxi162Scf00191g01211' => 'pax', 'Peaxi162Scf00238g01110' => 'pax', 'Peaxi162Scf00330g00719' => 'pax', 'Peaxi162Scf00627g00018' => 'pax', 'PGR031G2686' => 'pgr', 'PGR042G0809' => 'pgr', 'PGR142G0193' => 'pgr', 'PGSC0003DMG400011066' => 'stu', 'PGSC0003DMG400012041' => 'stu', 'PGSC0003DMG400013678' => 'stu', 'PGSC0003DMG400023477' => 'stu', 'PGSC0003DMG400025956' => 'stu', 'PGSC0003DMG401019151' => 'stu', 'Phvul.006G116400' => 'pvu', 'Phvul.007G097300' => 'pvu', 'Phvul.010G015000' => 'pvu', 'Phvul.010G083900' => 'pvu', 'Potri.001G117100' => 'ptr', 'Potri.002G147300' => 'ptr', 'Potri.003G115600' => 'ptr', 'Potri.006G087400' => 'ptr', 'Potri.010G226100' => 'ptr', 'Potri.014G069200' => 'ptr', 'Potri.014G104000' => 'ptr', 'Potri.016G100200' => 'ptr', 'Pp3c10_20450' => 'ppa', 'Pp3c1_42400' => 'ppa', 'Pp3c3_24390' => 'ppa', 'Pp3c3_2860' => 'ppa', 'PRCOL_00003193' => 'pco', 'Prupe.2G144500' => 'ppe', 'Prupe.2G195700' => 'ppe', 'Prupe.2G209800' => 'ppe', 'Prupe.5G080000' => 'ppe', 'Prupe.6G257900' => 'ppe', 'Psat3g001160' => 'psa', 'Psat6g181880' => 'psa', 'Psat7g233720' => 'psa', 'PSO063G7587' => 'pso', 'PSO339G2145' => 'pso', 'PSO339G3369' => 'pso', 'PSO478G2747' => 'pso', 'PSO513G0140' => 'pso', 'PSO782G1614' => 'pso', 'PSO782G4889' => 'pso', 'PSO782G5485' => 'pso', 'PSO801G0241' => 'pso', 'QL07p048854' => 'qlo', 'QL08p046745' => 'qlo', 'QL08p052606' => 'qlo', 'QL08p053414' => 'qlo', 'QL08p054868' => 'qlo', 'RcHm_v2.0_Chr1g0350251' => 'rch', 'RcHm_v2.0_Chr1g0360851' => 'rch', 'RcHm_v2.0_Chr1g0362791' => 'rch', 'RcHm_v2.0_Chr3g0466281' => 'rch', 'RcHm_v2.0_Chr7g0201481' => 'rch', 'Rhsim01G0148600' => 'rsi', 'Rhsim05G0194400' => 'rsi', 'Rhsim07G0000700' => 'rsi', 'Rhsim07G0000800' => 'rsi', 'Rhsim07G0027900' => 'rsi', 'Rhsim09G0149500' => 'rsi', 'RhsimUnG0186900' => 'rsi', 'Sabra01G0089900' => 'sbr', 'Sabra02G0114700' => 'sbr', 'Sabra02G0116300' => 'sbr', 'Sabra03G0080100' => 'sbr', 'Sabra08G0024300' => 'sbr', 'Sabra10G0174300' => 'sbr', 'Sabra14G0048900' => 'sbr', 'Sabra14G0076500' => 'sbr', 'SalBow5G2513' => 'sbo', 'Sc01g0002300' => 'sci', 'Sc01g0004450' => 'sci', 'Sc06g0001680' => 'sci', 'Sc23g0003580' => 'sci', 'Sed0000913' => 'sed', 'Sed0001655' => 'sed', 'Sed0007745' => 'sed', 'Sed0010951' => 'sed', 'Sed0017599' => 'sed', 'Sed0021405' => 'sed', 'Sed0022810' => 'sed', 'SEGI_07099' => 'sgi', 'SEGI_11931' => 'sgi', 'SEGI_13187' => 'sgi', 'SEGI_29958' => 'sgi', 'SEGI_36351' => 'sgi', 'SGA_v2.0_scaffold126G33770' => 'sas', 'SGA_v2.0_scaffold153G37003' => 'sas', 'SGA_v2.0_scaffold2G01359' => 'sas', 'SGA_v2.0_scaffold5G03064' => 'sas', 'SGA_v2.0_scaffold95G28903' => 'sas', 'SHI12701' => 'shi', 'SHI26410' => 'shi', 'SHI38997' => 'shi', 'SHI53759' => 'shi', 'SHI53886' => 'shi', 'SHI54714' => 'shi', 'SMO011G0041' => 'smo', 'SMO146G0251' => 'smo', 'SMO160G0004' => 'smo', 'SMO174G0057' => 'smo', 'SMO244G0089' => 'smo', 'SMO296G0011' => 'smo', 'Solyc01g091280.3' => 'sly', 'Solyc05g047610.3' => 'sly', 'Solyc05g047640.3' => 'sly', 'Solyc05g055630.3' => 'sly', 'Solyc10g018160.2' => 'sly', 'Solyc10g084820.2' => 'sly', 'Solyc10g086565.2' => 'sly', 'Sopen01g037030' => 'spe', 'Sopen05g027920' => 'spe', 'Sopen05g034070' => 'spe', 'Sopen10g007260' => 'spe', 'Sopen10g034260' => 'spe', 'Sopen10g035950' => 'spe', 'Sp3g07710' => 'spa', 'Sp4g27420' => 'spa', 'Sp5g02450' => 'spa', 'Sp6g01280' => 'spa', 'Sp6g38480' => 'spa', 'Sp7g20780' => 'spa', 'TAR374G1413' => 'tar', 'TAR623G1777' => 'tar', 'TAR629G2370' => 'tar', 'TAR633G1759' => 'tar', 'TAR636G3387' => 'tar', 'THA.LOC104802447' => 'tha', 'THA.LOC104813916' => 'tha', 'THA.LOC104816423' => 'tha', 'THA.LOC104817246' => 'tha', 'THA.LOC104825895' => 'tha', 'Thecc.01G335200' => 'tca', 'Thecc.01G377400' => 'tca', 'Thecc.03G262200' => 'tca', 'Thecc.05G036800' => 'tca', 'Thecc.10G080500' => 'tca', 'Thecc.10G080800' => 'tca', 'Thhalv10001560m.g' => 'esa', 'Thhalv10006120m.g' => 'esa', 'Thhalv10014375m.g' => 'esa', 'Thhalv10021264m.g' => 'esa', 'Thhalv10028856m.g' => 'esa', 'TPR.G1914' => 'tpr', 'TPR.G4757' => 'tpr', 'TPR.G5595' => 'tpr', 'TWI14G0952' => 'twi', 'TWI14G1307' => 'twi', 'TWI38G2143' => 'twi', 'TWI59G0826' => 'twi', 'TWI77G0527' => 'twi', 'TWI81G0150' => 'twi', 'unitig_21.g21018' => 'ugi', 'unitig_26.g9725' => 'ugi', 'unitig_744.g24653' => 'ugi', 'unitig_749.g13778' => 'ugi', 'unitig_899.g15035' => 'ugi', 'vmacro04296' => 'vma', 'vmacro04852' => 'vma', 'vmacro13404' => 'vma', 'vmacro20169' => 'vma', 'vmacro21014' => 'vma', 'VMungo0331G0237' => 'vmu', 'VMungo0331G0706' => 'vmu', 'VMungo0331G1361' => 'vmu', 'VMungo0331G1489' => 'vmu', 'VMungo0540G1037' => 'vmu', 'VMungo0720G2487' => 'vmu', 'VMungo0720G2721' => 'vmu', 'Zm00001eb086860' => 'zma', 'Zm00001eb104760' => 'zma', 'Zm00001eb148220' => 'zma', 'Zm00001eb259030' => 'zma', 'Zm00001eb289590' => 'zma', 'Zm00001eb420150' => 'zma' ), 'gf_id' => 'HOM05D000968', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000968' ), 'data_identifier' => 'HOM05D000968', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000968', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p31690' => 'bna', 'A03p36040' => 'bna', 'A03p53730' => 'bna', 'A04p01410' => 'bna', 'A05p05420' => 'bna', 'A05p39630' => 'bna', 'A05p39640' => 'bna', 'A09p00970' => 'bna', 'A09p53060' => 'bna', 'A10p31890' => 'bna', 'Aa31LG10G15040' => 'aar', 'Aa31LG1G21090' => 'aar', 'Aa31LG1G26900' => 'aar', 'Aa31LG3G1820' => 'aar', 'Aa31LG5G1100' => 'aar', 'Aa31LG6G4740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2265' => 'aag', 'Actinidia07998' => 'ach', 'Actinidia11266' => 'ach', 'Actinidia12682' => 'ach', 'Actinidia26479' => 'ach', 'Actinidia31406' => 'ach', 'Actinidia32437' => 'ach', 'Actinidia38862' => 'ach', 'Ah.05g174230' => 'amhyb', 'Ah.05g179070' => 'amhyb', 'Ah.05g179090' => 'amhyb', 'Ah.12g059950' => 'amhyb', 'AL3G20480' => 'aly', 'AL4G44520' => 'aly', 'AL5G43110' => 'aly', 'AL6G13890' => 'aly', 'AL6G52620' => 'aly', 'AL7G30830' => 'aly', 'Aqoxy1G00899' => 'aox', 'Aqoxy5G04333' => 'aox', 'Aqoxy7G00641' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3IZ0NN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4EF6AW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W9P8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79GA3M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C43NQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFCU6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G95YVJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCHK29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LU1UG8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX91RN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGB4B1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8DA0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9H7JI' => 'arhy', 'AT3G09320' => 'ath', 'AT3G60800' => 'ath', 'AT4G00840' => 'ath', 'AT4G22750' => 'ath', 'AT5G04270' => 'ath', 'ATR0090G003' => 'atr', 'ATR0559G349' => 'atr', 'ATR0680G261' => 'atr', 'ATR0810G048' => 'atr', 'Atru.chr12.831' => 'acertr', 'Atru.chr5.303' => 'acertr', 'Atru.chr5.748' => 'acertr', 'Atru.chr8.1999' => 'acertr', 'Atru.chr9.1436' => 'acertr', 'AUR62004211' => 'cqu', 'AUR62004548' => 'cqu', 'AUR62013637' => 'cqu', 'AUR62022662' => 'cqu', 'AUR62025777' => 'cqu', 'AUR62042386' => 'cqu', 'BcaB01g02310' => 'bca', 'BcaB01g06062' => 'bca', 'BcaB02g08975' => 'bca', 'BcaB02g08980' => 'bca', 'BcaC01g04228' => 'bca', 'BcaC01g06830' => 'bca', 'BcaC02g10186' => 'bca', 'BcaC02g12214' => 'bca', 'BcaC04g24101' => 'bca', 'BcaC05g29520' => 'bca', 'BcaC05g29661' => 'bca', 'BcaC06g32130' => 'bca', 'BcaC06g32131' => 'bca', 'BcaC07g40601' => 'bca', 'BcaC07g42641' => 'bca', 'BcaNung01038' => 'bca', 'BcaNung01676' => 'bca', 'BcaNung02480' => 'bca', 'BcaNung07376' => 'bca', 'BolC3t16146H' => 'bol', 'BolC3t16637H' => 'bol', 'BolC4t22257H' => 'bol', 'BolC4t24728H' => 'bol', 'BolC5t34517H' => 'bol', 'BolC7t45703H' => 'bol', 'BolC8t51166H' => 'bol', 'BolC9t53038H' => 'bol', 'BolC9t60000H' => 'bol', 'BraA01t01345Z' => 'bra', 'BraA01t01346Z' => 'bra', 'BraA01t01348Z' => 'bra', 'BraA03t12347Z' => 'bra', 'BraA03t12775Z' => 'bra', 'BraA03t14439Z' => 'bra', 'BraA04t15860Z' => 'bra', 'BraA05t19511Z' => 'bra', 'BraA05t22746Z' => 'bra', 'BraA09t35767Z' => 'bra', 'BraA09t40732Z' => 'bra', 'BraA10t45233Z' => 'bra', 'C03p38720' => 'bna', 'C03p43680' => 'bna', 'C04p06350' => 'bna', 'C04p31800' => 'bna', 'C05p58680' => 'bna', 'C07p52110' => 'bna', 'C08p35760' => 'bna', 'C09p01050' => 'bna', 'C09p72600' => 'bna', 'CAN.G106.2' => 'can', 'CAN.G1482.1' => 'can', 'CAN.G324.12' => 'can', 'CAN.G388.20' => 'can', 'CAN.G412.7' => 'can', 'CAN.G694.32' => 'can', 'CAN.G92.12' => 'can', 'CANSAT11G2353' => 'cansat', 'CANSAT21G1398' => 'cansat', 'CANSAT56G2456' => 'cansat', 'CANSAT56G3031' => 'cansat', 'CANSAT56G4539' => 'cansat', 'CARHR083680' => 'chi', 'CARHR171190' => 'chi', 'CARHR209010' => 'chi', 'CARHR229680' => 'chi', 'CARHR249490' => 'chi', 'Carub.0003s0844' => 'cru', 'Carub.0005s2755' => 'cru', 'Carub.0006s0322' => 'cru', 'Carub.0006s3586' => 'cru', 'Carub.0007s1855' => 'cru', 'Ca_07808_v3' => 'car', 'Ca_09535_v3' => 'car', 'Ca_10548_v3' => 'car', 'Ca_19913_v3' => 'car', 'Ca_19916_v3' => 'car', 'Ca_19975_v3' => 'car', 'CBR_g22876' => 'cbr', 'CBR_g22879' => 'cbr', 'CBR_g38491' => 'cbr', 'CBR_g54185' => 'cbr', 'CBR_g54190' => 'cbr', 'Cc02_g11020' => 'ccan', 'Cc02_g23920' => 'ccan', 'Cc02_g39860' => 'ccan', 'Cc02_g39870' => 'ccan', 'Cc03_g06760' => 'ccan', 'Cc06_g02450' => 'ccan', 'Cc09_g09450' => 'ccan', 'CDE02G1959' => 'cde', 'CDE04G0600' => 'cde', 'CDE07G1996' => 'cde', 'CDE07G2078' => 'cde', 'CDE11G0611' => 'cde', 'Cfa001683' => 'cfa', 'Cfa001734' => 'cfa', 'Cfa001737' => 'cfa', 'Cfa003751' => 'cfa', 'Cfa012019' => 'cfa', 'Cfa017353' => 'cfa', 'Cfa017732' => 'cfa', 'Cfa022464' => 'cfa', 'Ciclev10012400m.g' => 'ccl', 'Ciclev10021242m.g' => 'ccl', 'Ciclev10021302m.g' => 'ccl', 'Ciclev10021463m.g' => 'ccl', 'Ciclev10032359m.g' => 'ccl', 'CiPaw.01G081000' => 'cil', 'CiPaw.01G262500' => 'cil', 'CiPaw.01G269800' => 'cil', 'CiPaw.02G168400' => 'cil', 'CiPaw.05G119500' => 'cil', 'CiPaw.11G147300' => 'cil', 'ClCG01G003630' => 'cla', 'ClCG05G000510' => 'cla', 'ClCG05G002300' => 'cla', 'ClCG08G007650' => 'cla', 'ClCG10G021250' => 'cla', 'COL.COLO4_06218' => 'col', 'COL.COLO4_12538' => 'col', 'COL.COLO4_14775' => 'col', 'COL.COLO4_23875' => 'col', 'Cpa.g.sc141.16' => 'cpa', 'Cpa.g.sc169.16' => 'cpa', 'Cpa.g.sc244.4' => 'cpa', 'Cpa.g.sc244.5' => 'cpa', 'Cpa.g.sc29.87' => 'cpa', 'Cpa.g.sc53.115' => 'cpa', 'Cre03.g207502' => 'cre', 'Cre06.g277000' => 'cre', 'Cre09.g394050' => 'cre', 'CsaV3_3G007680' => 'csa', 'CsaV3_3G009710' => 'csa', 'CsaV3_3G034790' => 'csa', 'CsaV3_5G003750' => 'csa', 'CsaV3_6G036620' => 'csa', 'CSS0002288' => 'camsi', 'CSS0011250' => 'camsi', 'CSS0021619' => 'camsi', 'CSS0046701' => 'camsi', 'DCAR_006420' => 'dca', 'DCAR_006865' => 'dca', 'DCAR_008558' => 'dca', 'DCAR_028754' => 'dca', 'DCAR_028755' => 'dca', 'Dinv31218' => 'din', 'Dinv32371' => 'din', 'Dinv34250' => 'din', 'Dinv37156' => 'din', 'Dinv43704' => 'din', 'Duzib093G1811' => 'dzi', 'Duzib106G1622' => 'dzi', 'Duzib114G0504' => 'dzi', 'Duzib128G0338' => 'dzi', 'Duzib128G1577' => 'dzi', 'Duzib133G0104' => 'dzi', 'Duzib133G1080' => 'dzi', 'Duzib138G0324' => 'dzi', 'Duzib138G0394' => 'dzi', 'Duzib205G0122' => 'dzi', 'Duzib268G1020' => 'dzi', 'Duzib268G1359' => 'dzi', 'ECA232G3929' => 'eca', 'ECA236G2210' => 'eca', 'ECA236G2287' => 'eca', 'ECA240G4568' => 'eca', 'ECA247G0894' => 'eca', 'EL10Ac1g00200' => 'bvu', 'EL10Ac1g00886' => 'bvu', 'EL10As1g23091' => 'bvu', 'EL10As1g23092' => 'bvu', 'Eucgr.A01284' => 'egr', 'Eucgr.A01285' => 'egr', 'Eucgr.D02456' => 'egr', 'Eucgr.E00018' => 'egr', 'Eucgr.E01439' => 'egr', 'Eucgr.G02859' => 'egr', 'FAN01G0168' => 'fan', 'FAN01G0453' => 'fan', 'FAN01G2761' => 'fan', 'FAN02G1239' => 'fan', 'FAN03G0645' => 'fan', 'FAN03G2707' => 'fan', 'FAN03G2978' => 'fan', 'FAN04G0227' => 'fan', 'FAN06G0091' => 'fan', 'FAN06G1418' => 'fan', 'FAN06G1512' => 'fan', 'FAN06G1986' => 'fan', 'FAN06G2905' => 'fan', 'FAN06G4325' => 'fan', 'FAN08G0033' => 'fan', 'FAN09G0642' => 'fan', 'FAN10G1763' => 'fan', 'FAN10G2026' => 'fan', 'FAN10G2513' => 'fan', 'FAN10G3402' => 'fan', 'FAN10G3564' => 'fan', 'FAN10G3987' => 'fan', 'FAN13G1490' => 'fan', 'FAN14G5857' => 'fan', 'FAN18G1188' => 'fan', 'FvH4_5g00750' => 'fve', 'FvH4_6g13410' => 'fve', 'FvH4_7g11740' => 'fve', 'FvH4_7g17410' => 'fve', 'FvH4_7g18860' => 'fve', 'Glyma.01G099100' => 'gma', 'Glyma.01G142300' => 'gma', 'Glyma.03G025500' => 'gma', 'Glyma.03G069700' => 'gma', 'Glyma.03G260000' => 'gma', 'Glyma.09G269800' => 'gma', 'Glyma.10G208700' => 'gma', 'Glyma.18G220400' => 'gma', 'Glyma.20G182000' => 'gma', 'Gohir.A01G221726' => 'ghi', 'Gohir.A07G134600' => 'ghi', 'Gohir.A07G146000' => 'ghi', 'Gohir.A08G173900' => 'ghi', 'Gohir.A09G194900' => 'ghi', 'Gohir.A10G204100' => 'ghi', 'Gohir.A11G080600' => 'ghi', 'Gohir.A11G327500' => 'ghi', 'Gohir.A12G101800' => 'ghi', 'Gohir.D01G211200' => 'ghi', 'Gohir.D07G139200' => 'ghi', 'Gohir.D07G152100' => 'ghi', 'Gohir.D08G192600' => 'ghi', 'Gohir.D09G189200' => 'ghi', 'Gohir.D10G212000' => 'ghi', 'Gohir.D11G085200' => 'ghi', 'Gohir.D11G346400' => 'ghi', 'Gohir.D12G104800' => 'ghi', 'Gorai.001G151300' => 'gra', 'Gorai.001G174100' => 'gra', 'Gorai.002G257000' => 'gra', 'Gorai.004G202600' => 'gra', 'Gorai.007G090900' => 'gra', 'Gorai.007G376700' => 'gra', 'Gorai.008G114100' => 'gra', 'Gorai.011G237900' => 'gra', 'GSVIVG01005450001' => 'vvi', 'GSVIVG01016232001' => 'vvi', 'GSVIVG01026157001' => 'vvi', 'GSVIVG01027419001' => 'vvi', 'GSVIVG01027631001' => 'vvi', 'GSVIVG01034143001' => 'vvi', 'HanXRQChr03g0093921' => 'han', 'HanXRQChr04g0120001' => 'han', 'HanXRQChr04g0122561' => 'han', 'HanXRQChr09g0246851' => 'han', 'HanXRQChr10g0293311' => 'han', 'HanXRQChr13g0425231' => 'han', 'HanXRQChr16g0532571' => 'han', 'Haze_09050' => 'cav', 'Haze_15715' => 'cav', 'Haze_15716' => 'cav', 'Haze_16803' => 'cav', 'Haze_16850' => 'cav', 'Hma1.2p1_0301F.1_g118655' => 'hma', 'Hma1.2p1_0309F.1_g120590' => 'hma', 'Hma1.2p1_0936F.1_g238900' => 'hma', 'Hma1.2p1_3552F.1_g336740' => 'hma', 'HPP92_003520' => 'vpl', 'HPP92_006628' => 'vpl', 'HPP92_006645' => 'vpl', 'HPP92_014669' => 'vpl', 'HPP92_015077' => 'vpl', 'Hund16742' => 'sun', 'Hund17022' => 'sun', 'Lalb_Chr02g0152131' => 'lal', 'Lalb_Chr05g0225371' => 'lal', 'Lalb_Chr07g0189841' => 'lal', 'Lalb_Chr07g0192961' => 'lal', 'Lalb_Chr12g0208221' => 'lal', 'Lalb_Chr13g0291211' => 'lal', 'Lalb_Chr13g0291781' => 'lal', 'Lalb_Chr18g0044651' => 'lal', 'Lalb_Chr21g0313731' => 'lal', 'Lj1g0022533' => 'lja', 'Lj2A18T50' => 'lonja', 'Lj2A92G93' => 'lonja', 'Lj3A965T73' => 'lonja', 'Lj3g0000673' => 'lja', 'Lj3g0002666' => 'lja', 'Lj4g0016985' => 'lja', 'Lj5g0003625' => 'lja', 'Lj7A529G36' => 'lonja', 'Lj9A569T49' => 'lonja', 'Lj9A604T63' => 'lonja', 'Lsat_1_v5_gn_3_132060' => 'lsa', 'Lsat_1_v5_gn_4_68941' => 'lsa', 'Lsat_1_v5_gn_5_95580' => 'lsa', 'Lsat_1_v5_gn_7_161' => 'lsa', 'Lsat_1_v5_gn_7_7041' => 'lsa', 'Lsat_1_v5_gn_9_33481' => 'lsa', 'Lsat_1_v5_gn_9_68260' => 'lsa', 'Manes.01G073100' => 'mes', 'Manes.01G266300' => 'mes', 'Manes.02G033300' => 'mes', 'Manes.05G017900' => 'mes', 'Manes.05G046100' => 'mes', 'Manes.08G080900' => 'mes', 'Manes.10G049400' => 'mes', 'Mapoly0009s0186' => 'mpo', 'Mapoly0036s0118' => 'mpo', 'Mapoly0101s0046' => 'mpo', 'MBI04_g30218_MAGBIO' => 'mbi', 'MBI04_g35564_MAGBIO' => 'mbi', 'MBI12_g34011_MAGBIO' => 'mbi', 'MBI14_g04655_MAGBIO' => 'mbi', 'MCO07G653' => 'mco', 'MCO10G173' => 'mco', 'MD01G1087100' => 'mdo', 'MD01G1104200' => 'mdo', 'MD02G1205100' => 'mdo', 'MD04G1079200' => 'mdo', 'MD04G1131400' => 'mdo', 'MD07G1121600' => 'mdo', 'MD07G1157300' => 'mdo', 'MD07G1171000' => 'mdo', 'MD12G1144500' => 'mdo', 'Medtr1g094610' => 'mtr', 'Medtr4g021795' => 'mtr', 'Medtr4g023760' => 'mtr', 'Medtr7g118050' => 'mtr', 'MELO3C005582.2' => 'cme', 'MELO3C005989.2' => 'cme', 'MELO3C006192.2' => 'cme', 'MELO3C009248.2' => 'cme', 'MELO3C019817.2' => 'cme', 'Migut.B01625' => 'egut', 'Migut.B01915' => 'egut', 'Migut.F01721' => 'egut', 'Migut.J00314' => 'egut', 'MSTRG.20742' => 'ama', 'MSTRG.8134' => 'ama', 'Nitab4.5_0000096g0010' => 'nta', 'Nitab4.5_0000202g0030' => 'nta', 'Nitab4.5_0000216g0370' => 'nta', 'Nitab4.5_0000457g0230' => 'nta', 'Nitab4.5_0001702g0170' => 'nta', 'Nitab4.5_0003607g0010' => 'nta', 'Nitab4.5_0004917g0020' => 'nta', 'Nitab4.5_0007059g0010' => 'nta', 'Nitab4.5_0007184g0010' => 'nta', 'Nitab4.5_0007346g0020' => 'nta', 'Nn1g00410' => 'nnu', 'Nn1g01252' => 'nnu', 'Nn2g11168' => 'nnu', 'Nn2g13403' => 'nnu', 'Nn2g13760' => 'nnu', 'Nn4g26380' => 'nnu', 'Oeu000806.2' => 'oeu', 'Oeu005788.1' => 'oeu', 'Oeu006900.3' => 'oeu', 'Oeu007797.1' => 'oeu', 'Oeu011932.1' => 'oeu', 'Oeu022739.1' => 'oeu', 'Oeu037918.1' => 'oeu', 'Oeu055490.2' => 'oeu', 'Os01g0844400' => 'osa', 'Os02g0819100' => 'osa', 'Os03g0804300' => 'osa', 'Os05g0458000' => 'osa', 'Os07g0467800' => 'osa', 'Os12g0602200' => 'osa', 'Peaxi162Scf00013g03444' => 'pax', 'Peaxi162Scf00094g01120' => 'pax', 'Peaxi162Scf00191g01211' => 'pax', 'Peaxi162Scf00238g01110' => 'pax', 'Peaxi162Scf00330g00719' => 'pax', 'Peaxi162Scf00627g00018' => 'pax', 'PGR031G2686' => 'pgr', 'PGR042G0809' => 'pgr', 'PGR142G0193' => 'pgr', 'PGSC0003DMG400011066' => 'stu', 'PGSC0003DMG400012041' => 'stu', 'PGSC0003DMG400013678' => 'stu', 'PGSC0003DMG400023477' => 'stu', 'PGSC0003DMG400025956' => 'stu', 'PGSC0003DMG401019151' => 'stu', 'Phvul.006G116400' => 'pvu', 'Phvul.007G097300' => 'pvu', 'Phvul.010G015000' => 'pvu', 'Phvul.010G083900' => 'pvu', 'Potri.001G117100' => 'ptr', 'Potri.002G147300' => 'ptr', 'Potri.003G115600' => 'ptr', 'Potri.006G087400' => 'ptr', 'Potri.010G226100' => 'ptr', 'Potri.014G069200' => 'ptr', 'Potri.014G104000' => 'ptr', 'Potri.016G100200' => 'ptr', 'Pp3c10_20450' => 'ppa', 'Pp3c1_42400' => 'ppa', 'Pp3c3_24390' => 'ppa', 'Pp3c3_2860' => 'ppa', 'PRCOL_00003193' => 'pco', 'Prupe.2G144500' => 'ppe', 'Prupe.2G195700' => 'ppe', 'Prupe.2G209800' => 'ppe', 'Prupe.5G080000' => 'ppe', 'Prupe.6G257900' => 'ppe', 'Psat3g001160' => 'psa', 'Psat6g181880' => 'psa', 'Psat7g233720' => 'psa', 'PSO063G7587' => 'pso', 'PSO339G2145' => 'pso', 'PSO339G3369' => 'pso', 'PSO478G2747' => 'pso', 'PSO513G0140' => 'pso', 'PSO782G1614' => 'pso', 'PSO782G4889' => 'pso', 'PSO782G5485' => 'pso', 'PSO801G0241' => 'pso', 'QL07p048854' => 'qlo', 'QL08p046745' => 'qlo', 'QL08p052606' => 'qlo', 'QL08p053414' => 'qlo', 'QL08p054868' => 'qlo', 'RcHm_v2.0_Chr1g0350251' => 'rch', 'RcHm_v2.0_Chr1g0360851' => 'rch', 'RcHm_v2.0_Chr1g0362791' => 'rch', 'RcHm_v2.0_Chr3g0466281' => 'rch', 'RcHm_v2.0_Chr7g0201481' => 'rch', 'Rhsim01G0148600' => 'rsi', 'Rhsim05G0194400' => 'rsi', 'Rhsim07G0000700' => 'rsi', 'Rhsim07G0000800' => 'rsi', 'Rhsim07G0027900' => 'rsi', 'Rhsim09G0149500' => 'rsi', 'RhsimUnG0186900' => 'rsi', 'Sabra01G0089900' => 'sbr', 'Sabra02G0114700' => 'sbr', 'Sabra02G0116300' => 'sbr', 'Sabra03G0080100' => 'sbr', 'Sabra08G0024300' => 'sbr', 'Sabra10G0174300' => 'sbr', 'Sabra14G0048900' => 'sbr', 'Sabra14G0076500' => 'sbr', 'SalBow5G2513' => 'sbo', 'Sc01g0002300' => 'sci', 'Sc01g0004450' => 'sci', 'Sc06g0001680' => 'sci', 'Sc23g0003580' => 'sci', 'Sed0000913' => 'sed', 'Sed0001655' => 'sed', 'Sed0007745' => 'sed', 'Sed0010951' => 'sed', 'Sed0017599' => 'sed', 'Sed0021405' => 'sed', 'Sed0022810' => 'sed', 'SEGI_07099' => 'sgi', 'SEGI_11931' => 'sgi', 'SEGI_13187' => 'sgi', 'SEGI_29958' => 'sgi', 'SEGI_36351' => 'sgi', 'SGA_v2.0_scaffold126G33770' => 'sas', 'SGA_v2.0_scaffold153G37003' => 'sas', 'SGA_v2.0_scaffold2G01359' => 'sas', 'SGA_v2.0_scaffold5G03064' => 'sas', 'SGA_v2.0_scaffold95G28903' => 'sas', 'SHI12701' => 'shi', 'SHI26410' => 'shi', 'SHI38997' => 'shi', 'SHI53759' => 'shi', 'SHI53886' => 'shi', 'SHI54714' => 'shi', 'SMO011G0041' => 'smo', 'SMO146G0251' => 'smo', 'SMO160G0004' => 'smo', 'SMO174G0057' => 'smo', 'SMO244G0089' => 'smo', 'SMO296G0011' => 'smo', 'Solyc01g091280.3' => 'sly', 'Solyc05g047610.3' => 'sly', 'Solyc05g047640.3' => 'sly', 'Solyc05g055630.3' => 'sly', 'Solyc10g018160.2' => 'sly', 'Solyc10g084820.2' => 'sly', 'Solyc10g086565.2' => 'sly', 'Sopen01g037030' => 'spe', 'Sopen05g027920' => 'spe', 'Sopen05g034070' => 'spe', 'Sopen10g007260' => 'spe', 'Sopen10g034260' => 'spe', 'Sopen10g035950' => 'spe', 'Sp3g07710' => 'spa', 'Sp4g27420' => 'spa', 'Sp5g02450' => 'spa', 'Sp6g01280' => 'spa', 'Sp6g38480' => 'spa', 'Sp7g20780' => 'spa', 'TAR374G1413' => 'tar', 'TAR623G1777' => 'tar', 'TAR629G2370' => 'tar', 'TAR633G1759' => 'tar', 'TAR636G3387' => 'tar', 'THA.LOC104802447' => 'tha', 'THA.LOC104813916' => 'tha', 'THA.LOC104816423' => 'tha', 'THA.LOC104817246' => 'tha', 'THA.LOC104825895' => 'tha', 'Thecc.01G335200' => 'tca', 'Thecc.01G377400' => 'tca', 'Thecc.03G262200' => 'tca', 'Thecc.05G036800' => 'tca', 'Thecc.10G080500' => 'tca', 'Thecc.10G080800' => 'tca', 'Thhalv10001560m.g' => 'esa', 'Thhalv10006120m.g' => 'esa', 'Thhalv10014375m.g' => 'esa', 'Thhalv10021264m.g' => 'esa', 'Thhalv10028856m.g' => 'esa', 'TPR.G1914' => 'tpr', 'TPR.G4757' => 'tpr', 'TPR.G5595' => 'tpr', 'TWI14G0952' => 'twi', 'TWI14G1307' => 'twi', 'TWI38G2143' => 'twi', 'TWI59G0826' => 'twi', 'TWI77G0527' => 'twi', 'TWI81G0150' => 'twi', 'unitig_21.g21018' => 'ugi', 'unitig_26.g9725' => 'ugi', 'unitig_744.g24653' => 'ugi', 'unitig_749.g13778' => 'ugi', 'unitig_899.g15035' => 'ugi', 'vmacro04296' => 'vma', 'vmacro04852' => 'vma', 'vmacro13404' => 'vma', 'vmacro20169' => 'vma', 'vmacro21014' => 'vma', 'VMungo0331G0237' => 'vmu', 'VMungo0331G0706' => 'vmu', 'VMungo0331G1361' => 'vmu', 'VMungo0331G1489' => 'vmu', 'VMungo0540G1037' => 'vmu', 'VMungo0720G2487' => 'vmu', 'VMungo0720G2721' => 'vmu', 'Zm00001eb086860' => 'zma', 'Zm00001eb104760' => 'zma', 'Zm00001eb148220' => 'zma', 'Zm00001eb259030' => 'zma', 'Zm00001eb289590' => 'zma', 'Zm00001eb420150' => 'zma' ) $gf_id = 'HOM05D000968' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000968' ) $data_identifier = 'HOM05D000968' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 19, 'bol' => (int) 9, 'bra' => (int) 12, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 5, 'ccan' => (int) 7, 'cde' => (int) 5, 'cfa' => (int) 8, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 4, 'dca' => (int) 5, 'din' => (int) 5, 'dzi' => (int) 12, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 25, 'fve' => (int) 5, 'gma' => (int) 9, 'ghi' => (int) 18, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 7, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 5, 'sun' => (int) 2, 'lal' => (int) 9, 'lja' => (int) 5, 'lonja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 9, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 2, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 3, 'stu' => (int) 6, 'pvu' => (int) 4, 'ptr' => (int) 8, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 3, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 1, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 5, 'sas' => (int) 5, 'shi' => (int) 6, 'smo' => (int) 6, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 3, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420150' $species_info = array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ) $local_species = 'shi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000968', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p31690' => 'bna', 'A03p36040' => 'bna', 'A03p53730' => 'bna', 'A04p01410' => 'bna', 'A05p05420' => 'bna', 'A05p39630' => 'bna', 'A05p39640' => 'bna', 'A09p00970' => 'bna', 'A09p53060' => 'bna', 'A10p31890' => 'bna', 'Aa31LG10G15040' => 'aar', 'Aa31LG1G21090' => 'aar', 'Aa31LG1G26900' => 'aar', 'Aa31LG3G1820' => 'aar', 'Aa31LG5G1100' => 'aar', 'Aa31LG6G4740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2265' => 'aag', 'Actinidia07998' => 'ach', 'Actinidia11266' => 'ach', 'Actinidia12682' => 'ach', 'Actinidia26479' => 'ach', 'Actinidia31406' => 'ach', 'Actinidia32437' => 'ach', 'Actinidia38862' => 'ach', 'Ah.05g174230' => 'amhyb', 'Ah.05g179070' => 'amhyb', 'Ah.05g179090' => 'amhyb', 'Ah.12g059950' => 'amhyb', 'AL3G20480' => 'aly', 'AL4G44520' => 'aly', 'AL5G43110' => 'aly', 'AL6G13890' => 'aly', 'AL6G52620' => 'aly', 'AL7G30830' => 'aly', 'Aqoxy1G00899' => 'aox', 'Aqoxy5G04333' => 'aox', 'Aqoxy7G00641' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3IZ0NN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4EF6AW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W9P8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79GA3M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C43NQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFCU6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G95YVJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCHK29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LU1UG8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX91RN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGB4B1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8DA0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9H7JI' => 'arhy', 'AT3G09320' => 'ath', 'AT3G60800' => 'ath', 'AT4G00840' => 'ath', 'AT4G22750' => 'ath', 'AT5G04270' => 'ath', 'ATR0090G003' => 'atr', 'ATR0559G349' => 'atr', 'ATR0680G261' => 'atr', 'ATR0810G048' => 'atr', 'Atru.chr12.831' => 'acertr', 'Atru.chr5.303' => 'acertr', 'Atru.chr5.748' => 'acertr', 'Atru.chr8.1999' => 'acertr', 'Atru.chr9.1436' => 'acertr', 'AUR62004211' => 'cqu', 'AUR62004548' => 'cqu', 'AUR62013637' => 'cqu', 'AUR62022662' => 'cqu', 'AUR62025777' => 'cqu', 'AUR62042386' => 'cqu', 'BcaB01g02310' => 'bca', 'BcaB01g06062' => 'bca', 'BcaB02g08975' => 'bca', 'BcaB02g08980' => 'bca', 'BcaC01g04228' => 'bca', 'BcaC01g06830' => 'bca', 'BcaC02g10186' => 'bca', 'BcaC02g12214' => 'bca', 'BcaC04g24101' => 'bca', 'BcaC05g29520' => 'bca', 'BcaC05g29661' => 'bca', 'BcaC06g32130' => 'bca', 'BcaC06g32131' => 'bca', 'BcaC07g40601' => 'bca', 'BcaC07g42641' => 'bca', 'BcaNung01038' => 'bca', 'BcaNung01676' => 'bca', 'BcaNung02480' => 'bca', 'BcaNung07376' => 'bca', 'BolC3t16146H' => 'bol', 'BolC3t16637H' => 'bol', 'BolC4t22257H' => 'bol', 'BolC4t24728H' => 'bol', 'BolC5t34517H' => 'bol', 'BolC7t45703H' => 'bol', 'BolC8t51166H' => 'bol', 'BolC9t53038H' => 'bol', 'BolC9t60000H' => 'bol', 'BraA01t01345Z' => 'bra', 'BraA01t01346Z' => 'bra', 'BraA01t01348Z' => 'bra', 'BraA03t12347Z' => 'bra', 'BraA03t12775Z' => 'bra', 'BraA03t14439Z' => 'bra', 'BraA04t15860Z' => 'bra', 'BraA05t19511Z' => 'bra', 'BraA05t22746Z' => 'bra', 'BraA09t35767Z' => 'bra', 'BraA09t40732Z' => 'bra', 'BraA10t45233Z' => 'bra', 'C03p38720' => 'bna', 'C03p43680' => 'bna', 'C04p06350' => 'bna', 'C04p31800' => 'bna', 'C05p58680' => 'bna', 'C07p52110' => 'bna', 'C08p35760' => 'bna', 'C09p01050' => 'bna', 'C09p72600' => 'bna', 'CAN.G106.2' => 'can', 'CAN.G1482.1' => 'can', 'CAN.G324.12' => 'can', 'CAN.G388.20' => 'can', 'CAN.G412.7' => 'can', 'CAN.G694.32' => 'can', 'CAN.G92.12' => 'can', 'CANSAT11G2353' => 'cansat', 'CANSAT21G1398' => 'cansat', 'CANSAT56G2456' => 'cansat', 'CANSAT56G3031' => 'cansat', 'CANSAT56G4539' => 'cansat', 'CARHR083680' => 'chi', 'CARHR171190' => 'chi', 'CARHR209010' => 'chi', 'CARHR229680' => 'chi', 'CARHR249490' => 'chi', 'Carub.0003s0844' => 'cru', 'Carub.0005s2755' => 'cru', 'Carub.0006s0322' => 'cru', 'Carub.0006s3586' => 'cru', 'Carub.0007s1855' => 'cru', 'Ca_07808_v3' => 'car', 'Ca_09535_v3' => 'car', 'Ca_10548_v3' => 'car', 'Ca_19913_v3' => 'car', 'Ca_19916_v3' => 'car', 'Ca_19975_v3' => 'car', 'CBR_g22876' => 'cbr', 'CBR_g22879' => 'cbr', 'CBR_g38491' => 'cbr', 'CBR_g54185' => 'cbr', 'CBR_g54190' => 'cbr', 'Cc02_g11020' => 'ccan', 'Cc02_g23920' => 'ccan', 'Cc02_g39860' => 'ccan', 'Cc02_g39870' => 'ccan', 'Cc03_g06760' => 'ccan', 'Cc06_g02450' => 'ccan', 'Cc09_g09450' => 'ccan', 'CDE02G1959' => 'cde', 'CDE04G0600' => 'cde', 'CDE07G1996' => 'cde', 'CDE07G2078' => 'cde', 'CDE11G0611' => 'cde', 'Cfa001683' => 'cfa', 'Cfa001734' => 'cfa', 'Cfa001737' => 'cfa', 'Cfa003751' => 'cfa', 'Cfa012019' => 'cfa', 'Cfa017353' => 'cfa', 'Cfa017732' => 'cfa', 'Cfa022464' => 'cfa', 'Ciclev10012400m.g' => 'ccl', 'Ciclev10021242m.g' => 'ccl', 'Ciclev10021302m.g' => 'ccl', 'Ciclev10021463m.g' => 'ccl', 'Ciclev10032359m.g' => 'ccl', 'CiPaw.01G081000' => 'cil', 'CiPaw.01G262500' => 'cil', 'CiPaw.01G269800' => 'cil', 'CiPaw.02G168400' => 'cil', 'CiPaw.05G119500' => 'cil', 'CiPaw.11G147300' => 'cil', 'ClCG01G003630' => 'cla', 'ClCG05G000510' => 'cla', 'ClCG05G002300' => 'cla', 'ClCG08G007650' => 'cla', 'ClCG10G021250' => 'cla', 'COL.COLO4_06218' => 'col', 'COL.COLO4_12538' => 'col', 'COL.COLO4_14775' => 'col', 'COL.COLO4_23875' => 'col', 'Cpa.g.sc141.16' => 'cpa', 'Cpa.g.sc169.16' => 'cpa', 'Cpa.g.sc244.4' => 'cpa', 'Cpa.g.sc244.5' => 'cpa', 'Cpa.g.sc29.87' => 'cpa', 'Cpa.g.sc53.115' => 'cpa', 'Cre03.g207502' => 'cre', 'Cre06.g277000' => 'cre', 'Cre09.g394050' => 'cre', 'CsaV3_3G007680' => 'csa', 'CsaV3_3G009710' => 'csa', 'CsaV3_3G034790' => 'csa', 'CsaV3_5G003750' => 'csa', 'CsaV3_6G036620' => 'csa', 'CSS0002288' => 'camsi', 'CSS0011250' => 'camsi', 'CSS0021619' => 'camsi', 'CSS0046701' => 'camsi', 'DCAR_006420' => 'dca', 'DCAR_006865' => 'dca', 'DCAR_008558' => 'dca', 'DCAR_028754' => 'dca', 'DCAR_028755' => 'dca', 'Dinv31218' => 'din', 'Dinv32371' => 'din', 'Dinv34250' => 'din', 'Dinv37156' => 'din', 'Dinv43704' => 'din', 'Duzib093G1811' => 'dzi', 'Duzib106G1622' => 'dzi', 'Duzib114G0504' => 'dzi', 'Duzib128G0338' => 'dzi', 'Duzib128G1577' => 'dzi', 'Duzib133G0104' => 'dzi', 'Duzib133G1080' => 'dzi', 'Duzib138G0324' => 'dzi', 'Duzib138G0394' => 'dzi', 'Duzib205G0122' => 'dzi', 'Duzib268G1020' => 'dzi', 'Duzib268G1359' => 'dzi', 'ECA232G3929' => 'eca', 'ECA236G2210' => 'eca', 'ECA236G2287' => 'eca', 'ECA240G4568' => 'eca', 'ECA247G0894' => 'eca', 'EL10Ac1g00200' => 'bvu', 'EL10Ac1g00886' => 'bvu', 'EL10As1g23091' => 'bvu', 'EL10As1g23092' => 'bvu', 'Eucgr.A01284' => 'egr', 'Eucgr.A01285' => 'egr', 'Eucgr.D02456' => 'egr', 'Eucgr.E00018' => 'egr', 'Eucgr.E01439' => 'egr', 'Eucgr.G02859' => 'egr', 'FAN01G0168' => 'fan', 'FAN01G0453' => 'fan', 'FAN01G2761' => 'fan', 'FAN02G1239' => 'fan', 'FAN03G0645' => 'fan', 'FAN03G2707' => 'fan', 'FAN03G2978' => 'fan', 'FAN04G0227' => 'fan', 'FAN06G0091' => 'fan', 'FAN06G1418' => 'fan', 'FAN06G1512' => 'fan', 'FAN06G1986' => 'fan', 'FAN06G2905' => 'fan', 'FAN06G4325' => 'fan', 'FAN08G0033' => 'fan', 'FAN09G0642' => 'fan', 'FAN10G1763' => 'fan', 'FAN10G2026' => 'fan', 'FAN10G2513' => 'fan', 'FAN10G3402' => 'fan', 'FAN10G3564' => 'fan', 'FAN10G3987' => 'fan', 'FAN13G1490' => 'fan', 'FAN14G5857' => 'fan', 'FAN18G1188' => 'fan', 'FvH4_5g00750' => 'fve', 'FvH4_6g13410' => 'fve', 'FvH4_7g11740' => 'fve', 'FvH4_7g17410' => 'fve', 'FvH4_7g18860' => 'fve', 'Glyma.01G099100' => 'gma', 'Glyma.01G142300' => 'gma', 'Glyma.03G025500' => 'gma', 'Glyma.03G069700' => 'gma', 'Glyma.03G260000' => 'gma', 'Glyma.09G269800' => 'gma', 'Glyma.10G208700' => 'gma', 'Glyma.18G220400' => 'gma', 'Glyma.20G182000' => 'gma', 'Gohir.A01G221726' => 'ghi', 'Gohir.A07G134600' => 'ghi', 'Gohir.A07G146000' => 'ghi', 'Gohir.A08G173900' => 'ghi', 'Gohir.A09G194900' => 'ghi', 'Gohir.A10G204100' => 'ghi', 'Gohir.A11G080600' => 'ghi', 'Gohir.A11G327500' => 'ghi', 'Gohir.A12G101800' => 'ghi', 'Gohir.D01G211200' => 'ghi', 'Gohir.D07G139200' => 'ghi', 'Gohir.D07G152100' => 'ghi', 'Gohir.D08G192600' => 'ghi', 'Gohir.D09G189200' => 'ghi', 'Gohir.D10G212000' => 'ghi', 'Gohir.D11G085200' => 'ghi', 'Gohir.D11G346400' => 'ghi', 'Gohir.D12G104800' => 'ghi', 'Gorai.001G151300' => 'gra', 'Gorai.001G174100' => 'gra', 'Gorai.002G257000' => 'gra', 'Gorai.004G202600' => 'gra', 'Gorai.007G090900' => 'gra', 'Gorai.007G376700' => 'gra', 'Gorai.008G114100' => 'gra', 'Gorai.011G237900' => 'gra', 'GSVIVG01005450001' => 'vvi', 'GSVIVG01016232001' => 'vvi', 'GSVIVG01026157001' => 'vvi', 'GSVIVG01027419001' => 'vvi', 'GSVIVG01027631001' => 'vvi', 'GSVIVG01034143001' => 'vvi', 'HanXRQChr03g0093921' => 'han', 'HanXRQChr04g0120001' => 'han', 'HanXRQChr04g0122561' => 'han', 'HanXRQChr09g0246851' => 'han', 'HanXRQChr10g0293311' => 'han', 'HanXRQChr13g0425231' => 'han', 'HanXRQChr16g0532571' => 'han', 'Haze_09050' => 'cav', 'Haze_15715' => 'cav', 'Haze_15716' => 'cav', 'Haze_16803' => 'cav', 'Haze_16850' => 'cav', 'Hma1.2p1_0301F.1_g118655' => 'hma', 'Hma1.2p1_0309F.1_g120590' => 'hma', 'Hma1.2p1_0936F.1_g238900' => 'hma', 'Hma1.2p1_3552F.1_g336740' => 'hma', 'HPP92_003520' => 'vpl', 'HPP92_006628' => 'vpl', 'HPP92_006645' => 'vpl', 'HPP92_014669' => 'vpl', 'HPP92_015077' => 'vpl', 'Hund16742' => 'sun', 'Hund17022' => 'sun', 'Lalb_Chr02g0152131' => 'lal', 'Lalb_Chr05g0225371' => 'lal', 'Lalb_Chr07g0189841' => 'lal', 'Lalb_Chr07g0192961' => 'lal', 'Lalb_Chr12g0208221' => 'lal', 'Lalb_Chr13g0291211' => 'lal', 'Lalb_Chr13g0291781' => 'lal', 'Lalb_Chr18g0044651' => 'lal', 'Lalb_Chr21g0313731' => 'lal', 'Lj1g0022533' => 'lja', 'Lj2A18T50' => 'lonja', 'Lj2A92G93' => 'lonja', 'Lj3A965T73' => 'lonja', 'Lj3g0000673' => 'lja', 'Lj3g0002666' => 'lja', 'Lj4g0016985' => 'lja', 'Lj5g0003625' => 'lja', 'Lj7A529G36' => 'lonja', 'Lj9A569T49' => 'lonja', 'Lj9A604T63' => 'lonja', 'Lsat_1_v5_gn_3_132060' => 'lsa', 'Lsat_1_v5_gn_4_68941' => 'lsa', 'Lsat_1_v5_gn_5_95580' => 'lsa', 'Lsat_1_v5_gn_7_161' => 'lsa', 'Lsat_1_v5_gn_7_7041' => 'lsa', 'Lsat_1_v5_gn_9_33481' => 'lsa', 'Lsat_1_v5_gn_9_68260' => 'lsa', 'Manes.01G073100' => 'mes', 'Manes.01G266300' => 'mes', 'Manes.02G033300' => 'mes', 'Manes.05G017900' => 'mes', 'Manes.05G046100' => 'mes', 'Manes.08G080900' => 'mes', 'Manes.10G049400' => 'mes', 'Mapoly0009s0186' => 'mpo', 'Mapoly0036s0118' => 'mpo', 'Mapoly0101s0046' => 'mpo', 'MBI04_g30218_MAGBIO' => 'mbi', 'MBI04_g35564_MAGBIO' => 'mbi', 'MBI12_g34011_MAGBIO' => 'mbi', 'MBI14_g04655_MAGBIO' => 'mbi', 'MCO07G653' => 'mco', 'MCO10G173' => 'mco', 'MD01G1087100' => 'mdo', 'MD01G1104200' => 'mdo', 'MD02G1205100' => 'mdo', 'MD04G1079200' => 'mdo', 'MD04G1131400' => 'mdo', 'MD07G1121600' => 'mdo', 'MD07G1157300' => 'mdo', 'MD07G1171000' => 'mdo', 'MD12G1144500' => 'mdo', 'Medtr1g094610' => 'mtr', 'Medtr4g021795' => 'mtr', 'Medtr4g023760' => 'mtr', 'Medtr7g118050' => 'mtr', 'MELO3C005582.2' => 'cme', 'MELO3C005989.2' => 'cme', 'MELO3C006192.2' => 'cme', 'MELO3C009248.2' => 'cme', 'MELO3C019817.2' => 'cme', 'Migut.B01625' => 'egut', 'Migut.B01915' => 'egut', 'Migut.F01721' => 'egut', 'Migut.J00314' => 'egut', 'MSTRG.20742' => 'ama', 'MSTRG.8134' => 'ama', 'Nitab4.5_0000096g0010' => 'nta', 'Nitab4.5_0000202g0030' => 'nta', 'Nitab4.5_0000216g0370' => 'nta', 'Nitab4.5_0000457g0230' => 'nta', 'Nitab4.5_0001702g0170' => 'nta', 'Nitab4.5_0003607g0010' => 'nta', 'Nitab4.5_0004917g0020' => 'nta', 'Nitab4.5_0007059g0010' => 'nta', 'Nitab4.5_0007184g0010' => 'nta', 'Nitab4.5_0007346g0020' => 'nta', 'Nn1g00410' => 'nnu', 'Nn1g01252' => 'nnu', 'Nn2g11168' => 'nnu', 'Nn2g13403' => 'nnu', 'Nn2g13760' => 'nnu', 'Nn4g26380' => 'nnu', 'Oeu000806.2' => 'oeu', 'Oeu005788.1' => 'oeu', 'Oeu006900.3' => 'oeu', 'Oeu007797.1' => 'oeu', 'Oeu011932.1' => 'oeu', 'Oeu022739.1' => 'oeu', 'Oeu037918.1' => 'oeu', 'Oeu055490.2' => 'oeu', 'Os01g0844400' => 'osa', 'Os02g0819100' => 'osa', 'Os03g0804300' => 'osa', 'Os05g0458000' => 'osa', 'Os07g0467800' => 'osa', 'Os12g0602200' => 'osa', 'Peaxi162Scf00013g03444' => 'pax', 'Peaxi162Scf00094g01120' => 'pax', 'Peaxi162Scf00191g01211' => 'pax', 'Peaxi162Scf00238g01110' => 'pax', 'Peaxi162Scf00330g00719' => 'pax', 'Peaxi162Scf00627g00018' => 'pax', 'PGR031G2686' => 'pgr', 'PGR042G0809' => 'pgr', 'PGR142G0193' => 'pgr', 'PGSC0003DMG400011066' => 'stu', 'PGSC0003DMG400012041' => 'stu', 'PGSC0003DMG400013678' => 'stu', 'PGSC0003DMG400023477' => 'stu', 'PGSC0003DMG400025956' => 'stu', 'PGSC0003DMG401019151' => 'stu', 'Phvul.006G116400' => 'pvu', 'Phvul.007G097300' => 'pvu', 'Phvul.010G015000' => 'pvu', 'Phvul.010G083900' => 'pvu', 'Potri.001G117100' => 'ptr', 'Potri.002G147300' => 'ptr', 'Potri.003G115600' => 'ptr', 'Potri.006G087400' => 'ptr', 'Potri.010G226100' => 'ptr', 'Potri.014G069200' => 'ptr', 'Potri.014G104000' => 'ptr', 'Potri.016G100200' => 'ptr', 'Pp3c10_20450' => 'ppa', 'Pp3c1_42400' => 'ppa', 'Pp3c3_24390' => 'ppa', 'Pp3c3_2860' => 'ppa', 'PRCOL_00003193' => 'pco', 'Prupe.2G144500' => 'ppe', 'Prupe.2G195700' => 'ppe', 'Prupe.2G209800' => 'ppe', 'Prupe.5G080000' => 'ppe', 'Prupe.6G257900' => 'ppe', 'Psat3g001160' => 'psa', 'Psat6g181880' => 'psa', 'Psat7g233720' => 'psa', 'PSO063G7587' => 'pso', 'PSO339G2145' => 'pso', 'PSO339G3369' => 'pso', 'PSO478G2747' => 'pso', 'PSO513G0140' => 'pso', 'PSO782G1614' => 'pso', 'PSO782G4889' => 'pso', 'PSO782G5485' => 'pso', 'PSO801G0241' => 'pso', 'QL07p048854' => 'qlo', 'QL08p046745' => 'qlo', 'QL08p052606' => 'qlo', 'QL08p053414' => 'qlo', 'QL08p054868' => 'qlo', 'RcHm_v2.0_Chr1g0350251' => 'rch', 'RcHm_v2.0_Chr1g0360851' => 'rch', 'RcHm_v2.0_Chr1g0362791' => 'rch', 'RcHm_v2.0_Chr3g0466281' => 'rch', 'RcHm_v2.0_Chr7g0201481' => 'rch', 'Rhsim01G0148600' => 'rsi', 'Rhsim05G0194400' => 'rsi', 'Rhsim07G0000700' => 'rsi', 'Rhsim07G0000800' => 'rsi', 'Rhsim07G0027900' => 'rsi', 'Rhsim09G0149500' => 'rsi', 'RhsimUnG0186900' => 'rsi', 'Sabra01G0089900' => 'sbr', 'Sabra02G0114700' => 'sbr', 'Sabra02G0116300' => 'sbr', 'Sabra03G0080100' => 'sbr', 'Sabra08G0024300' => 'sbr', 'Sabra10G0174300' => 'sbr', 'Sabra14G0048900' => 'sbr', 'Sabra14G0076500' => 'sbr', 'SalBow5G2513' => 'sbo', 'Sc01g0002300' => 'sci', 'Sc01g0004450' => 'sci', 'Sc06g0001680' => 'sci', 'Sc23g0003580' => 'sci', 'Sed0000913' => 'sed', 'Sed0001655' => 'sed', 'Sed0007745' => 'sed', 'Sed0010951' => 'sed', 'Sed0017599' => 'sed', 'Sed0021405' => 'sed', 'Sed0022810' => 'sed', 'SEGI_07099' => 'sgi', 'SEGI_11931' => 'sgi', 'SEGI_13187' => 'sgi', 'SEGI_29958' => 'sgi', 'SEGI_36351' => 'sgi', 'SGA_v2.0_scaffold126G33770' => 'sas', 'SGA_v2.0_scaffold153G37003' => 'sas', 'SGA_v2.0_scaffold2G01359' => 'sas', 'SGA_v2.0_scaffold5G03064' => 'sas', 'SGA_v2.0_scaffold95G28903' => 'sas', 'SHI12701' => 'shi', 'SHI26410' => 'shi', 'SHI38997' => 'shi', 'SHI53759' => 'shi', 'SHI53886' => 'shi', 'SHI54714' => 'shi', 'SMO011G0041' => 'smo', 'SMO146G0251' => 'smo', 'SMO160G0004' => 'smo', 'SMO174G0057' => 'smo', 'SMO244G0089' => 'smo', 'SMO296G0011' => 'smo', 'Solyc01g091280.3' => 'sly', 'Solyc05g047610.3' => 'sly', 'Solyc05g047640.3' => 'sly', 'Solyc05g055630.3' => 'sly', 'Solyc10g018160.2' => 'sly', 'Solyc10g084820.2' => 'sly', 'Solyc10g086565.2' => 'sly', 'Sopen01g037030' => 'spe', 'Sopen05g027920' => 'spe', 'Sopen05g034070' => 'spe', 'Sopen10g007260' => 'spe', 'Sopen10g034260' => 'spe', 'Sopen10g035950' => 'spe', 'Sp3g07710' => 'spa', 'Sp4g27420' => 'spa', 'Sp5g02450' => 'spa', 'Sp6g01280' => 'spa', 'Sp6g38480' => 'spa', 'Sp7g20780' => 'spa', 'TAR374G1413' => 'tar', 'TAR623G1777' => 'tar', 'TAR629G2370' => 'tar', 'TAR633G1759' => 'tar', 'TAR636G3387' => 'tar', 'THA.LOC104802447' => 'tha', 'THA.LOC104813916' => 'tha', 'THA.LOC104816423' => 'tha', 'THA.LOC104817246' => 'tha', 'THA.LOC104825895' => 'tha', 'Thecc.01G335200' => 'tca', 'Thecc.01G377400' => 'tca', 'Thecc.03G262200' => 'tca', 'Thecc.05G036800' => 'tca', 'Thecc.10G080500' => 'tca', 'Thecc.10G080800' => 'tca', 'Thhalv10001560m.g' => 'esa', 'Thhalv10006120m.g' => 'esa', 'Thhalv10014375m.g' => 'esa', 'Thhalv10021264m.g' => 'esa', 'Thhalv10028856m.g' => 'esa', 'TPR.G1914' => 'tpr', 'TPR.G4757' => 'tpr', 'TPR.G5595' => 'tpr', 'TWI14G0952' => 'twi', 'TWI14G1307' => 'twi', 'TWI38G2143' => 'twi', 'TWI59G0826' => 'twi', 'TWI77G0527' => 'twi', 'TWI81G0150' => 'twi', 'unitig_21.g21018' => 'ugi', 'unitig_26.g9725' => 'ugi', 'unitig_744.g24653' => 'ugi', 'unitig_749.g13778' => 'ugi', 'unitig_899.g15035' => 'ugi', 'vmacro04296' => 'vma', 'vmacro04852' => 'vma', 'vmacro13404' => 'vma', 'vmacro20169' => 'vma', 'vmacro21014' => 'vma', 'VMungo0331G0237' => 'vmu', 'VMungo0331G0706' => 'vmu', 'VMungo0331G1361' => 'vmu', 'VMungo0331G1489' => 'vmu', 'VMungo0540G1037' => 'vmu', 'VMungo0720G2487' => 'vmu', 'VMungo0720G2721' => 'vmu', 'Zm00001eb086860' => 'zma', 'Zm00001eb104760' => 'zma', 'Zm00001eb148220' => 'zma', 'Zm00001eb259030' => 'zma', 'Zm00001eb289590' => 'zma', 'Zm00001eb420150' => 'zma' ), 'gf_id' => 'HOM05D000968', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000968' ), 'data_identifier' => 'HOM05D000968', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000968', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p31690' => 'bna', 'A03p36040' => 'bna', 'A03p53730' => 'bna', 'A04p01410' => 'bna', 'A05p05420' => 'bna', 'A05p39630' => 'bna', 'A05p39640' => 'bna', 'A09p00970' => 'bna', 'A09p53060' => 'bna', 'A10p31890' => 'bna', 'Aa31LG10G15040' => 'aar', 'Aa31LG1G21090' => 'aar', 'Aa31LG1G26900' => 'aar', 'Aa31LG3G1820' => 'aar', 'Aa31LG5G1100' => 'aar', 'Aa31LG6G4740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2265' => 'aag', 'Actinidia07998' => 'ach', 'Actinidia11266' => 'ach', 'Actinidia12682' => 'ach', 'Actinidia26479' => 'ach', 'Actinidia31406' => 'ach', 'Actinidia32437' => 'ach', 'Actinidia38862' => 'ach', 'Ah.05g174230' => 'amhyb', 'Ah.05g179070' => 'amhyb', 'Ah.05g179090' => 'amhyb', 'Ah.12g059950' => 'amhyb', 'AL3G20480' => 'aly', 'AL4G44520' => 'aly', 'AL5G43110' => 'aly', 'AL6G13890' => 'aly', 'AL6G52620' => 'aly', 'AL7G30830' => 'aly', 'Aqoxy1G00899' => 'aox', 'Aqoxy5G04333' => 'aox', 'Aqoxy7G00641' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3IZ0NN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4EF6AW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W9P8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79GA3M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C43NQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFCU6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G95YVJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCHK29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LU1UG8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX91RN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGB4B1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8DA0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9H7JI' => 'arhy', 'AT3G09320' => 'ath', 'AT3G60800' => 'ath', 'AT4G00840' => 'ath', 'AT4G22750' => 'ath', 'AT5G04270' => 'ath', 'ATR0090G003' => 'atr', 'ATR0559G349' => 'atr', 'ATR0680G261' => 'atr', 'ATR0810G048' => 'atr', 'Atru.chr12.831' => 'acertr', 'Atru.chr5.303' => 'acertr', 'Atru.chr5.748' => 'acertr', 'Atru.chr8.1999' => 'acertr', 'Atru.chr9.1436' => 'acertr', 'AUR62004211' => 'cqu', 'AUR62004548' => 'cqu', 'AUR62013637' => 'cqu', 'AUR62022662' => 'cqu', 'AUR62025777' => 'cqu', 'AUR62042386' => 'cqu', 'BcaB01g02310' => 'bca', 'BcaB01g06062' => 'bca', 'BcaB02g08975' => 'bca', 'BcaB02g08980' => 'bca', 'BcaC01g04228' => 'bca', 'BcaC01g06830' => 'bca', 'BcaC02g10186' => 'bca', 'BcaC02g12214' => 'bca', 'BcaC04g24101' => 'bca', 'BcaC05g29520' => 'bca', 'BcaC05g29661' => 'bca', 'BcaC06g32130' => 'bca', 'BcaC06g32131' => 'bca', 'BcaC07g40601' => 'bca', 'BcaC07g42641' => 'bca', 'BcaNung01038' => 'bca', 'BcaNung01676' => 'bca', 'BcaNung02480' => 'bca', 'BcaNung07376' => 'bca', 'BolC3t16146H' => 'bol', 'BolC3t16637H' => 'bol', 'BolC4t22257H' => 'bol', 'BolC4t24728H' => 'bol', 'BolC5t34517H' => 'bol', 'BolC7t45703H' => 'bol', 'BolC8t51166H' => 'bol', 'BolC9t53038H' => 'bol', 'BolC9t60000H' => 'bol', 'BraA01t01345Z' => 'bra', 'BraA01t01346Z' => 'bra', 'BraA01t01348Z' => 'bra', 'BraA03t12347Z' => 'bra', 'BraA03t12775Z' => 'bra', 'BraA03t14439Z' => 'bra', 'BraA04t15860Z' => 'bra', 'BraA05t19511Z' => 'bra', 'BraA05t22746Z' => 'bra', 'BraA09t35767Z' => 'bra', 'BraA09t40732Z' => 'bra', 'BraA10t45233Z' => 'bra', 'C03p38720' => 'bna', 'C03p43680' => 'bna', 'C04p06350' => 'bna', 'C04p31800' => 'bna', 'C05p58680' => 'bna', 'C07p52110' => 'bna', 'C08p35760' => 'bna', 'C09p01050' => 'bna', 'C09p72600' => 'bna', 'CAN.G106.2' => 'can', 'CAN.G1482.1' => 'can', 'CAN.G324.12' => 'can', 'CAN.G388.20' => 'can', 'CAN.G412.7' => 'can', 'CAN.G694.32' => 'can', 'CAN.G92.12' => 'can', 'CANSAT11G2353' => 'cansat', 'CANSAT21G1398' => 'cansat', 'CANSAT56G2456' => 'cansat', 'CANSAT56G3031' => 'cansat', 'CANSAT56G4539' => 'cansat', 'CARHR083680' => 'chi', 'CARHR171190' => 'chi', 'CARHR209010' => 'chi', 'CARHR229680' => 'chi', 'CARHR249490' => 'chi', 'Carub.0003s0844' => 'cru', 'Carub.0005s2755' => 'cru', 'Carub.0006s0322' => 'cru', 'Carub.0006s3586' => 'cru', 'Carub.0007s1855' => 'cru', 'Ca_07808_v3' => 'car', 'Ca_09535_v3' => 'car', 'Ca_10548_v3' => 'car', 'Ca_19913_v3' => 'car', 'Ca_19916_v3' => 'car', 'Ca_19975_v3' => 'car', 'CBR_g22876' => 'cbr', 'CBR_g22879' => 'cbr', 'CBR_g38491' => 'cbr', 'CBR_g54185' => 'cbr', 'CBR_g54190' => 'cbr', 'Cc02_g11020' => 'ccan', 'Cc02_g23920' => 'ccan', 'Cc02_g39860' => 'ccan', 'Cc02_g39870' => 'ccan', 'Cc03_g06760' => 'ccan', 'Cc06_g02450' => 'ccan', 'Cc09_g09450' => 'ccan', 'CDE02G1959' => 'cde', 'CDE04G0600' => 'cde', 'CDE07G1996' => 'cde', 'CDE07G2078' => 'cde', 'CDE11G0611' => 'cde', 'Cfa001683' => 'cfa', 'Cfa001734' => 'cfa', 'Cfa001737' => 'cfa', 'Cfa003751' => 'cfa', 'Cfa012019' => 'cfa', 'Cfa017353' => 'cfa', 'Cfa017732' => 'cfa', 'Cfa022464' => 'cfa', 'Ciclev10012400m.g' => 'ccl', 'Ciclev10021242m.g' => 'ccl', 'Ciclev10021302m.g' => 'ccl', 'Ciclev10021463m.g' => 'ccl', 'Ciclev10032359m.g' => 'ccl', 'CiPaw.01G081000' => 'cil', 'CiPaw.01G262500' => 'cil', 'CiPaw.01G269800' => 'cil', 'CiPaw.02G168400' => 'cil', 'CiPaw.05G119500' => 'cil', 'CiPaw.11G147300' => 'cil', 'ClCG01G003630' => 'cla', 'ClCG05G000510' => 'cla', 'ClCG05G002300' => 'cla', 'ClCG08G007650' => 'cla', 'ClCG10G021250' => 'cla', 'COL.COLO4_06218' => 'col', 'COL.COLO4_12538' => 'col', 'COL.COLO4_14775' => 'col', 'COL.COLO4_23875' => 'col', 'Cpa.g.sc141.16' => 'cpa', 'Cpa.g.sc169.16' => 'cpa', 'Cpa.g.sc244.4' => 'cpa', 'Cpa.g.sc244.5' => 'cpa', 'Cpa.g.sc29.87' => 'cpa', 'Cpa.g.sc53.115' => 'cpa', 'Cre03.g207502' => 'cre', 'Cre06.g277000' => 'cre', 'Cre09.g394050' => 'cre', 'CsaV3_3G007680' => 'csa', 'CsaV3_3G009710' => 'csa', 'CsaV3_3G034790' => 'csa', 'CsaV3_5G003750' => 'csa', 'CsaV3_6G036620' => 'csa', 'CSS0002288' => 'camsi', 'CSS0011250' => 'camsi', 'CSS0021619' => 'camsi', 'CSS0046701' => 'camsi', 'DCAR_006420' => 'dca', 'DCAR_006865' => 'dca', 'DCAR_008558' => 'dca', 'DCAR_028754' => 'dca', 'DCAR_028755' => 'dca', 'Dinv31218' => 'din', 'Dinv32371' => 'din', 'Dinv34250' => 'din', 'Dinv37156' => 'din', 'Dinv43704' => 'din', 'Duzib093G1811' => 'dzi', 'Duzib106G1622' => 'dzi', 'Duzib114G0504' => 'dzi', 'Duzib128G0338' => 'dzi', 'Duzib128G1577' => 'dzi', 'Duzib133G0104' => 'dzi', 'Duzib133G1080' => 'dzi', 'Duzib138G0324' => 'dzi', 'Duzib138G0394' => 'dzi', 'Duzib205G0122' => 'dzi', 'Duzib268G1020' => 'dzi', 'Duzib268G1359' => 'dzi', 'ECA232G3929' => 'eca', 'ECA236G2210' => 'eca', 'ECA236G2287' => 'eca', 'ECA240G4568' => 'eca', 'ECA247G0894' => 'eca', 'EL10Ac1g00200' => 'bvu', 'EL10Ac1g00886' => 'bvu', 'EL10As1g23091' => 'bvu', 'EL10As1g23092' => 'bvu', 'Eucgr.A01284' => 'egr', 'Eucgr.A01285' => 'egr', 'Eucgr.D02456' => 'egr', 'Eucgr.E00018' => 'egr', 'Eucgr.E01439' => 'egr', 'Eucgr.G02859' => 'egr', 'FAN01G0168' => 'fan', 'FAN01G0453' => 'fan', 'FAN01G2761' => 'fan', 'FAN02G1239' => 'fan', 'FAN03G0645' => 'fan', 'FAN03G2707' => 'fan', 'FAN03G2978' => 'fan', 'FAN04G0227' => 'fan', 'FAN06G0091' => 'fan', 'FAN06G1418' => 'fan', 'FAN06G1512' => 'fan', 'FAN06G1986' => 'fan', 'FAN06G2905' => 'fan', 'FAN06G4325' => 'fan', 'FAN08G0033' => 'fan', 'FAN09G0642' => 'fan', 'FAN10G1763' => 'fan', 'FAN10G2026' => 'fan', 'FAN10G2513' => 'fan', 'FAN10G3402' => 'fan', 'FAN10G3564' => 'fan', 'FAN10G3987' => 'fan', 'FAN13G1490' => 'fan', 'FAN14G5857' => 'fan', 'FAN18G1188' => 'fan', 'FvH4_5g00750' => 'fve', 'FvH4_6g13410' => 'fve', 'FvH4_7g11740' => 'fve', 'FvH4_7g17410' => 'fve', 'FvH4_7g18860' => 'fve', 'Glyma.01G099100' => 'gma', 'Glyma.01G142300' => 'gma', 'Glyma.03G025500' => 'gma', 'Glyma.03G069700' => 'gma', 'Glyma.03G260000' => 'gma', 'Glyma.09G269800' => 'gma', 'Glyma.10G208700' => 'gma', 'Glyma.18G220400' => 'gma', 'Glyma.20G182000' => 'gma', 'Gohir.A01G221726' => 'ghi', 'Gohir.A07G134600' => 'ghi', 'Gohir.A07G146000' => 'ghi', 'Gohir.A08G173900' => 'ghi', 'Gohir.A09G194900' => 'ghi', 'Gohir.A10G204100' => 'ghi', 'Gohir.A11G080600' => 'ghi', 'Gohir.A11G327500' => 'ghi', 'Gohir.A12G101800' => 'ghi', 'Gohir.D01G211200' => 'ghi', 'Gohir.D07G139200' => 'ghi', 'Gohir.D07G152100' => 'ghi', 'Gohir.D08G192600' => 'ghi', 'Gohir.D09G189200' => 'ghi', 'Gohir.D10G212000' => 'ghi', 'Gohir.D11G085200' => 'ghi', 'Gohir.D11G346400' => 'ghi', 'Gohir.D12G104800' => 'ghi', 'Gorai.001G151300' => 'gra', 'Gorai.001G174100' => 'gra', 'Gorai.002G257000' => 'gra', 'Gorai.004G202600' => 'gra', 'Gorai.007G090900' => 'gra', 'Gorai.007G376700' => 'gra', 'Gorai.008G114100' => 'gra', 'Gorai.011G237900' => 'gra', 'GSVIVG01005450001' => 'vvi', 'GSVIVG01016232001' => 'vvi', 'GSVIVG01026157001' => 'vvi', 'GSVIVG01027419001' => 'vvi', 'GSVIVG01027631001' => 'vvi', 'GSVIVG01034143001' => 'vvi', 'HanXRQChr03g0093921' => 'han', 'HanXRQChr04g0120001' => 'han', 'HanXRQChr04g0122561' => 'han', 'HanXRQChr09g0246851' => 'han', 'HanXRQChr10g0293311' => 'han', 'HanXRQChr13g0425231' => 'han', 'HanXRQChr16g0532571' => 'han', 'Haze_09050' => 'cav', 'Haze_15715' => 'cav', 'Haze_15716' => 'cav', 'Haze_16803' => 'cav', 'Haze_16850' => 'cav', 'Hma1.2p1_0301F.1_g118655' => 'hma', 'Hma1.2p1_0309F.1_g120590' => 'hma', 'Hma1.2p1_0936F.1_g238900' => 'hma', 'Hma1.2p1_3552F.1_g336740' => 'hma', 'HPP92_003520' => 'vpl', 'HPP92_006628' => 'vpl', 'HPP92_006645' => 'vpl', 'HPP92_014669' => 'vpl', 'HPP92_015077' => 'vpl', 'Hund16742' => 'sun', 'Hund17022' => 'sun', 'Lalb_Chr02g0152131' => 'lal', 'Lalb_Chr05g0225371' => 'lal', 'Lalb_Chr07g0189841' => 'lal', 'Lalb_Chr07g0192961' => 'lal', 'Lalb_Chr12g0208221' => 'lal', 'Lalb_Chr13g0291211' => 'lal', 'Lalb_Chr13g0291781' => 'lal', 'Lalb_Chr18g0044651' => 'lal', 'Lalb_Chr21g0313731' => 'lal', 'Lj1g0022533' => 'lja', 'Lj2A18T50' => 'lonja', 'Lj2A92G93' => 'lonja', 'Lj3A965T73' => 'lonja', 'Lj3g0000673' => 'lja', 'Lj3g0002666' => 'lja', 'Lj4g0016985' => 'lja', 'Lj5g0003625' => 'lja', 'Lj7A529G36' => 'lonja', 'Lj9A569T49' => 'lonja', 'Lj9A604T63' => 'lonja', 'Lsat_1_v5_gn_3_132060' => 'lsa', 'Lsat_1_v5_gn_4_68941' => 'lsa', 'Lsat_1_v5_gn_5_95580' => 'lsa', 'Lsat_1_v5_gn_7_161' => 'lsa', 'Lsat_1_v5_gn_7_7041' => 'lsa', 'Lsat_1_v5_gn_9_33481' => 'lsa', 'Lsat_1_v5_gn_9_68260' => 'lsa', 'Manes.01G073100' => 'mes', 'Manes.01G266300' => 'mes', 'Manes.02G033300' => 'mes', 'Manes.05G017900' => 'mes', 'Manes.05G046100' => 'mes', 'Manes.08G080900' => 'mes', 'Manes.10G049400' => 'mes', 'Mapoly0009s0186' => 'mpo', 'Mapoly0036s0118' => 'mpo', 'Mapoly0101s0046' => 'mpo', 'MBI04_g30218_MAGBIO' => 'mbi', 'MBI04_g35564_MAGBIO' => 'mbi', 'MBI12_g34011_MAGBIO' => 'mbi', 'MBI14_g04655_MAGBIO' => 'mbi', 'MCO07G653' => 'mco', 'MCO10G173' => 'mco', 'MD01G1087100' => 'mdo', 'MD01G1104200' => 'mdo', 'MD02G1205100' => 'mdo', 'MD04G1079200' => 'mdo', 'MD04G1131400' => 'mdo', 'MD07G1121600' => 'mdo', 'MD07G1157300' => 'mdo', 'MD07G1171000' => 'mdo', 'MD12G1144500' => 'mdo', 'Medtr1g094610' => 'mtr', 'Medtr4g021795' => 'mtr', 'Medtr4g023760' => 'mtr', 'Medtr7g118050' => 'mtr', 'MELO3C005582.2' => 'cme', 'MELO3C005989.2' => 'cme', 'MELO3C006192.2' => 'cme', 'MELO3C009248.2' => 'cme', 'MELO3C019817.2' => 'cme', 'Migut.B01625' => 'egut', 'Migut.B01915' => 'egut', 'Migut.F01721' => 'egut', 'Migut.J00314' => 'egut', 'MSTRG.20742' => 'ama', 'MSTRG.8134' => 'ama', 'Nitab4.5_0000096g0010' => 'nta', 'Nitab4.5_0000202g0030' => 'nta', 'Nitab4.5_0000216g0370' => 'nta', 'Nitab4.5_0000457g0230' => 'nta', 'Nitab4.5_0001702g0170' => 'nta', 'Nitab4.5_0003607g0010' => 'nta', 'Nitab4.5_0004917g0020' => 'nta', 'Nitab4.5_0007059g0010' => 'nta', 'Nitab4.5_0007184g0010' => 'nta', 'Nitab4.5_0007346g0020' => 'nta', 'Nn1g00410' => 'nnu', 'Nn1g01252' => 'nnu', 'Nn2g11168' => 'nnu', 'Nn2g13403' => 'nnu', 'Nn2g13760' => 'nnu', 'Nn4g26380' => 'nnu', 'Oeu000806.2' => 'oeu', 'Oeu005788.1' => 'oeu', 'Oeu006900.3' => 'oeu', 'Oeu007797.1' => 'oeu', 'Oeu011932.1' => 'oeu', 'Oeu022739.1' => 'oeu', 'Oeu037918.1' => 'oeu', 'Oeu055490.2' => 'oeu', 'Os01g0844400' => 'osa', 'Os02g0819100' => 'osa', 'Os03g0804300' => 'osa', 'Os05g0458000' => 'osa', 'Os07g0467800' => 'osa', 'Os12g0602200' => 'osa', 'Peaxi162Scf00013g03444' => 'pax', 'Peaxi162Scf00094g01120' => 'pax', 'Peaxi162Scf00191g01211' => 'pax', 'Peaxi162Scf00238g01110' => 'pax', 'Peaxi162Scf00330g00719' => 'pax', 'Peaxi162Scf00627g00018' => 'pax', 'PGR031G2686' => 'pgr', 'PGR042G0809' => 'pgr', 'PGR142G0193' => 'pgr', 'PGSC0003DMG400011066' => 'stu', 'PGSC0003DMG400012041' => 'stu', 'PGSC0003DMG400013678' => 'stu', 'PGSC0003DMG400023477' => 'stu', 'PGSC0003DMG400025956' => 'stu', 'PGSC0003DMG401019151' => 'stu', 'Phvul.006G116400' => 'pvu', 'Phvul.007G097300' => 'pvu', 'Phvul.010G015000' => 'pvu', 'Phvul.010G083900' => 'pvu', 'Potri.001G117100' => 'ptr', 'Potri.002G147300' => 'ptr', 'Potri.003G115600' => 'ptr', 'Potri.006G087400' => 'ptr', 'Potri.010G226100' => 'ptr', 'Potri.014G069200' => 'ptr', 'Potri.014G104000' => 'ptr', 'Potri.016G100200' => 'ptr', 'Pp3c10_20450' => 'ppa', 'Pp3c1_42400' => 'ppa', 'Pp3c3_24390' => 'ppa', 'Pp3c3_2860' => 'ppa', 'PRCOL_00003193' => 'pco', 'Prupe.2G144500' => 'ppe', 'Prupe.2G195700' => 'ppe', 'Prupe.2G209800' => 'ppe', 'Prupe.5G080000' => 'ppe', 'Prupe.6G257900' => 'ppe', 'Psat3g001160' => 'psa', 'Psat6g181880' => 'psa', 'Psat7g233720' => 'psa', 'PSO063G7587' => 'pso', 'PSO339G2145' => 'pso', 'PSO339G3369' => 'pso', 'PSO478G2747' => 'pso', 'PSO513G0140' => 'pso', 'PSO782G1614' => 'pso', 'PSO782G4889' => 'pso', 'PSO782G5485' => 'pso', 'PSO801G0241' => 'pso', 'QL07p048854' => 'qlo', 'QL08p046745' => 'qlo', 'QL08p052606' => 'qlo', 'QL08p053414' => 'qlo', 'QL08p054868' => 'qlo', 'RcHm_v2.0_Chr1g0350251' => 'rch', 'RcHm_v2.0_Chr1g0360851' => 'rch', 'RcHm_v2.0_Chr1g0362791' => 'rch', 'RcHm_v2.0_Chr3g0466281' => 'rch', 'RcHm_v2.0_Chr7g0201481' => 'rch', 'Rhsim01G0148600' => 'rsi', 'Rhsim05G0194400' => 'rsi', 'Rhsim07G0000700' => 'rsi', 'Rhsim07G0000800' => 'rsi', 'Rhsim07G0027900' => 'rsi', 'Rhsim09G0149500' => 'rsi', 'RhsimUnG0186900' => 'rsi', 'Sabra01G0089900' => 'sbr', 'Sabra02G0114700' => 'sbr', 'Sabra02G0116300' => 'sbr', 'Sabra03G0080100' => 'sbr', 'Sabra08G0024300' => 'sbr', 'Sabra10G0174300' => 'sbr', 'Sabra14G0048900' => 'sbr', 'Sabra14G0076500' => 'sbr', 'SalBow5G2513' => 'sbo', 'Sc01g0002300' => 'sci', 'Sc01g0004450' => 'sci', 'Sc06g0001680' => 'sci', 'Sc23g0003580' => 'sci', 'Sed0000913' => 'sed', 'Sed0001655' => 'sed', 'Sed0007745' => 'sed', 'Sed0010951' => 'sed', 'Sed0017599' => 'sed', 'Sed0021405' => 'sed', 'Sed0022810' => 'sed', 'SEGI_07099' => 'sgi', 'SEGI_11931' => 'sgi', 'SEGI_13187' => 'sgi', 'SEGI_29958' => 'sgi', 'SEGI_36351' => 'sgi', 'SGA_v2.0_scaffold126G33770' => 'sas', 'SGA_v2.0_scaffold153G37003' => 'sas', 'SGA_v2.0_scaffold2G01359' => 'sas', 'SGA_v2.0_scaffold5G03064' => 'sas', 'SGA_v2.0_scaffold95G28903' => 'sas', 'SHI12701' => 'shi', 'SHI26410' => 'shi', 'SHI38997' => 'shi', 'SHI53759' => 'shi', 'SHI53886' => 'shi', 'SHI54714' => 'shi', 'SMO011G0041' => 'smo', 'SMO146G0251' => 'smo', 'SMO160G0004' => 'smo', 'SMO174G0057' => 'smo', 'SMO244G0089' => 'smo', 'SMO296G0011' => 'smo', 'Solyc01g091280.3' => 'sly', 'Solyc05g047610.3' => 'sly', 'Solyc05g047640.3' => 'sly', 'Solyc05g055630.3' => 'sly', 'Solyc10g018160.2' => 'sly', 'Solyc10g084820.2' => 'sly', 'Solyc10g086565.2' => 'sly', 'Sopen01g037030' => 'spe', 'Sopen05g027920' => 'spe', 'Sopen05g034070' => 'spe', 'Sopen10g007260' => 'spe', 'Sopen10g034260' => 'spe', 'Sopen10g035950' => 'spe', 'Sp3g07710' => 'spa', 'Sp4g27420' => 'spa', 'Sp5g02450' => 'spa', 'Sp6g01280' => 'spa', 'Sp6g38480' => 'spa', 'Sp7g20780' => 'spa', 'TAR374G1413' => 'tar', 'TAR623G1777' => 'tar', 'TAR629G2370' => 'tar', 'TAR633G1759' => 'tar', 'TAR636G3387' => 'tar', 'THA.LOC104802447' => 'tha', 'THA.LOC104813916' => 'tha', 'THA.LOC104816423' => 'tha', 'THA.LOC104817246' => 'tha', 'THA.LOC104825895' => 'tha', 'Thecc.01G335200' => 'tca', 'Thecc.01G377400' => 'tca', 'Thecc.03G262200' => 'tca', 'Thecc.05G036800' => 'tca', 'Thecc.10G080500' => 'tca', 'Thecc.10G080800' => 'tca', 'Thhalv10001560m.g' => 'esa', 'Thhalv10006120m.g' => 'esa', 'Thhalv10014375m.g' => 'esa', 'Thhalv10021264m.g' => 'esa', 'Thhalv10028856m.g' => 'esa', 'TPR.G1914' => 'tpr', 'TPR.G4757' => 'tpr', 'TPR.G5595' => 'tpr', 'TWI14G0952' => 'twi', 'TWI14G1307' => 'twi', 'TWI38G2143' => 'twi', 'TWI59G0826' => 'twi', 'TWI77G0527' => 'twi', 'TWI81G0150' => 'twi', 'unitig_21.g21018' => 'ugi', 'unitig_26.g9725' => 'ugi', 'unitig_744.g24653' => 'ugi', 'unitig_749.g13778' => 'ugi', 'unitig_899.g15035' => 'ugi', 'vmacro04296' => 'vma', 'vmacro04852' => 'vma', 'vmacro13404' => 'vma', 'vmacro20169' => 'vma', 'vmacro21014' => 'vma', 'VMungo0331G0237' => 'vmu', 'VMungo0331G0706' => 'vmu', 'VMungo0331G1361' => 'vmu', 'VMungo0331G1489' => 'vmu', 'VMungo0540G1037' => 'vmu', 'VMungo0720G2487' => 'vmu', 'VMungo0720G2721' => 'vmu', 'Zm00001eb086860' => 'zma', 'Zm00001eb104760' => 'zma', 'Zm00001eb148220' => 'zma', 'Zm00001eb259030' => 'zma', 'Zm00001eb289590' => 'zma', 'Zm00001eb420150' => 'zma' ) $gf_id = 'HOM05D000968' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000968' ) $data_identifier = 'HOM05D000968' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 19, 'bol' => (int) 9, 'bra' => (int) 12, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 5, 'ccan' => (int) 7, 'cde' => (int) 5, 'cfa' => (int) 8, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 4, 'dca' => (int) 5, 'din' => (int) 5, 'dzi' => (int) 12, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 25, 'fve' => (int) 5, 'gma' => (int) 9, 'ghi' => (int) 18, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 7, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 5, 'sun' => (int) 2, 'lal' => (int) 9, 'lja' => (int) 5, 'lonja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 9, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 2, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 3, 'stu' => (int) 6, 'pvu' => (int) 4, 'ptr' => (int) 8, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 3, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 1, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 5, 'sas' => (int) 5, 'shi' => (int) 6, 'smo' => (int) 6, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 3, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420150' $species_info = array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ) $local_species = 'shi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000968', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p31690' => 'bna', 'A03p36040' => 'bna', 'A03p53730' => 'bna', 'A04p01410' => 'bna', 'A05p05420' => 'bna', 'A05p39630' => 'bna', 'A05p39640' => 'bna', 'A09p00970' => 'bna', 'A09p53060' => 'bna', 'A10p31890' => 'bna', 'Aa31LG10G15040' => 'aar', 'Aa31LG1G21090' => 'aar', 'Aa31LG1G26900' => 'aar', 'Aa31LG3G1820' => 'aar', 'Aa31LG5G1100' => 'aar', 'Aa31LG6G4740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2265' => 'aag', 'Actinidia07998' => 'ach', 'Actinidia11266' => 'ach', 'Actinidia12682' => 'ach', 'Actinidia26479' => 'ach', 'Actinidia31406' => 'ach', 'Actinidia32437' => 'ach', 'Actinidia38862' => 'ach', 'Ah.05g174230' => 'amhyb', 'Ah.05g179070' => 'amhyb', 'Ah.05g179090' => 'amhyb', 'Ah.12g059950' => 'amhyb', 'AL3G20480' => 'aly', 'AL4G44520' => 'aly', 'AL5G43110' => 'aly', 'AL6G13890' => 'aly', 'AL6G52620' => 'aly', 'AL7G30830' => 'aly', 'Aqoxy1G00899' => 'aox', 'Aqoxy5G04333' => 'aox', 'Aqoxy7G00641' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3IZ0NN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4EF6AW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W9P8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79GA3M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C43NQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFCU6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G95YVJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCHK29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LU1UG8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX91RN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGB4B1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8DA0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9H7JI' => 'arhy', 'AT3G09320' => 'ath', 'AT3G60800' => 'ath', 'AT4G00840' => 'ath', 'AT4G22750' => 'ath', 'AT5G04270' => 'ath', 'ATR0090G003' => 'atr', 'ATR0559G349' => 'atr', 'ATR0680G261' => 'atr', 'ATR0810G048' => 'atr', 'Atru.chr12.831' => 'acertr', 'Atru.chr5.303' => 'acertr', 'Atru.chr5.748' => 'acertr', 'Atru.chr8.1999' => 'acertr', 'Atru.chr9.1436' => 'acertr', 'AUR62004211' => 'cqu', 'AUR62004548' => 'cqu', 'AUR62013637' => 'cqu', 'AUR62022662' => 'cqu', 'AUR62025777' => 'cqu', 'AUR62042386' => 'cqu', 'BcaB01g02310' => 'bca', 'BcaB01g06062' => 'bca', 'BcaB02g08975' => 'bca', 'BcaB02g08980' => 'bca', 'BcaC01g04228' => 'bca', 'BcaC01g06830' => 'bca', 'BcaC02g10186' => 'bca', 'BcaC02g12214' => 'bca', 'BcaC04g24101' => 'bca', 'BcaC05g29520' => 'bca', 'BcaC05g29661' => 'bca', 'BcaC06g32130' => 'bca', 'BcaC06g32131' => 'bca', 'BcaC07g40601' => 'bca', 'BcaC07g42641' => 'bca', 'BcaNung01038' => 'bca', 'BcaNung01676' => 'bca', 'BcaNung02480' => 'bca', 'BcaNung07376' => 'bca', 'BolC3t16146H' => 'bol', 'BolC3t16637H' => 'bol', 'BolC4t22257H' => 'bol', 'BolC4t24728H' => 'bol', 'BolC5t34517H' => 'bol', 'BolC7t45703H' => 'bol', 'BolC8t51166H' => 'bol', 'BolC9t53038H' => 'bol', 'BolC9t60000H' => 'bol', 'BraA01t01345Z' => 'bra', 'BraA01t01346Z' => 'bra', 'BraA01t01348Z' => 'bra', 'BraA03t12347Z' => 'bra', 'BraA03t12775Z' => 'bra', 'BraA03t14439Z' => 'bra', 'BraA04t15860Z' => 'bra', 'BraA05t19511Z' => 'bra', 'BraA05t22746Z' => 'bra', 'BraA09t35767Z' => 'bra', 'BraA09t40732Z' => 'bra', 'BraA10t45233Z' => 'bra', 'C03p38720' => 'bna', 'C03p43680' => 'bna', 'C04p06350' => 'bna', 'C04p31800' => 'bna', 'C05p58680' => 'bna', 'C07p52110' => 'bna', 'C08p35760' => 'bna', 'C09p01050' => 'bna', 'C09p72600' => 'bna', 'CAN.G106.2' => 'can', 'CAN.G1482.1' => 'can', 'CAN.G324.12' => 'can', 'CAN.G388.20' => 'can', 'CAN.G412.7' => 'can', 'CAN.G694.32' => 'can', 'CAN.G92.12' => 'can', 'CANSAT11G2353' => 'cansat', 'CANSAT21G1398' => 'cansat', 'CANSAT56G2456' => 'cansat', 'CANSAT56G3031' => 'cansat', 'CANSAT56G4539' => 'cansat', 'CARHR083680' => 'chi', 'CARHR171190' => 'chi', 'CARHR209010' => 'chi', 'CARHR229680' => 'chi', 'CARHR249490' => 'chi', 'Carub.0003s0844' => 'cru', 'Carub.0005s2755' => 'cru', 'Carub.0006s0322' => 'cru', 'Carub.0006s3586' => 'cru', 'Carub.0007s1855' => 'cru', 'Ca_07808_v3' => 'car', 'Ca_09535_v3' => 'car', 'Ca_10548_v3' => 'car', 'Ca_19913_v3' => 'car', 'Ca_19916_v3' => 'car', 'Ca_19975_v3' => 'car', 'CBR_g22876' => 'cbr', 'CBR_g22879' => 'cbr', 'CBR_g38491' => 'cbr', 'CBR_g54185' => 'cbr', 'CBR_g54190' => 'cbr', 'Cc02_g11020' => 'ccan', 'Cc02_g23920' => 'ccan', 'Cc02_g39860' => 'ccan', 'Cc02_g39870' => 'ccan', 'Cc03_g06760' => 'ccan', 'Cc06_g02450' => 'ccan', 'Cc09_g09450' => 'ccan', 'CDE02G1959' => 'cde', 'CDE04G0600' => 'cde', 'CDE07G1996' => 'cde', 'CDE07G2078' => 'cde', 'CDE11G0611' => 'cde', 'Cfa001683' => 'cfa', 'Cfa001734' => 'cfa', 'Cfa001737' => 'cfa', 'Cfa003751' => 'cfa', 'Cfa012019' => 'cfa', 'Cfa017353' => 'cfa', 'Cfa017732' => 'cfa', 'Cfa022464' => 'cfa', 'Ciclev10012400m.g' => 'ccl', 'Ciclev10021242m.g' => 'ccl', 'Ciclev10021302m.g' => 'ccl', 'Ciclev10021463m.g' => 'ccl', 'Ciclev10032359m.g' => 'ccl', 'CiPaw.01G081000' => 'cil', 'CiPaw.01G262500' => 'cil', 'CiPaw.01G269800' => 'cil', 'CiPaw.02G168400' => 'cil', 'CiPaw.05G119500' => 'cil', 'CiPaw.11G147300' => 'cil', 'ClCG01G003630' => 'cla', 'ClCG05G000510' => 'cla', 'ClCG05G002300' => 'cla', 'ClCG08G007650' => 'cla', 'ClCG10G021250' => 'cla', 'COL.COLO4_06218' => 'col', 'COL.COLO4_12538' => 'col', 'COL.COLO4_14775' => 'col', 'COL.COLO4_23875' => 'col', 'Cpa.g.sc141.16' => 'cpa', 'Cpa.g.sc169.16' => 'cpa', 'Cpa.g.sc244.4' => 'cpa', 'Cpa.g.sc244.5' => 'cpa', 'Cpa.g.sc29.87' => 'cpa', 'Cpa.g.sc53.115' => 'cpa', 'Cre03.g207502' => 'cre', 'Cre06.g277000' => 'cre', 'Cre09.g394050' => 'cre', 'CsaV3_3G007680' => 'csa', 'CsaV3_3G009710' => 'csa', 'CsaV3_3G034790' => 'csa', 'CsaV3_5G003750' => 'csa', 'CsaV3_6G036620' => 'csa', 'CSS0002288' => 'camsi', 'CSS0011250' => 'camsi', 'CSS0021619' => 'camsi', 'CSS0046701' => 'camsi', 'DCAR_006420' => 'dca', 'DCAR_006865' => 'dca', 'DCAR_008558' => 'dca', 'DCAR_028754' => 'dca', 'DCAR_028755' => 'dca', 'Dinv31218' => 'din', 'Dinv32371' => 'din', 'Dinv34250' => 'din', 'Dinv37156' => 'din', 'Dinv43704' => 'din', 'Duzib093G1811' => 'dzi', 'Duzib106G1622' => 'dzi', 'Duzib114G0504' => 'dzi', 'Duzib128G0338' => 'dzi', 'Duzib128G1577' => 'dzi', 'Duzib133G0104' => 'dzi', 'Duzib133G1080' => 'dzi', 'Duzib138G0324' => 'dzi', 'Duzib138G0394' => 'dzi', 'Duzib205G0122' => 'dzi', 'Duzib268G1020' => 'dzi', 'Duzib268G1359' => 'dzi', 'ECA232G3929' => 'eca', 'ECA236G2210' => 'eca', 'ECA236G2287' => 'eca', 'ECA240G4568' => 'eca', 'ECA247G0894' => 'eca', 'EL10Ac1g00200' => 'bvu', 'EL10Ac1g00886' => 'bvu', 'EL10As1g23091' => 'bvu', 'EL10As1g23092' => 'bvu', 'Eucgr.A01284' => 'egr', 'Eucgr.A01285' => 'egr', 'Eucgr.D02456' => 'egr', 'Eucgr.E00018' => 'egr', 'Eucgr.E01439' => 'egr', 'Eucgr.G02859' => 'egr', 'FAN01G0168' => 'fan', 'FAN01G0453' => 'fan', 'FAN01G2761' => 'fan', 'FAN02G1239' => 'fan', 'FAN03G0645' => 'fan', 'FAN03G2707' => 'fan', 'FAN03G2978' => 'fan', 'FAN04G0227' => 'fan', 'FAN06G0091' => 'fan', 'FAN06G1418' => 'fan', 'FAN06G1512' => 'fan', 'FAN06G1986' => 'fan', 'FAN06G2905' => 'fan', 'FAN06G4325' => 'fan', 'FAN08G0033' => 'fan', 'FAN09G0642' => 'fan', 'FAN10G1763' => 'fan', 'FAN10G2026' => 'fan', 'FAN10G2513' => 'fan', 'FAN10G3402' => 'fan', 'FAN10G3564' => 'fan', 'FAN10G3987' => 'fan', 'FAN13G1490' => 'fan', 'FAN14G5857' => 'fan', 'FAN18G1188' => 'fan', 'FvH4_5g00750' => 'fve', 'FvH4_6g13410' => 'fve', 'FvH4_7g11740' => 'fve', 'FvH4_7g17410' => 'fve', 'FvH4_7g18860' => 'fve', 'Glyma.01G099100' => 'gma', 'Glyma.01G142300' => 'gma', 'Glyma.03G025500' => 'gma', 'Glyma.03G069700' => 'gma', 'Glyma.03G260000' => 'gma', 'Glyma.09G269800' => 'gma', 'Glyma.10G208700' => 'gma', 'Glyma.18G220400' => 'gma', 'Glyma.20G182000' => 'gma', 'Gohir.A01G221726' => 'ghi', 'Gohir.A07G134600' => 'ghi', 'Gohir.A07G146000' => 'ghi', 'Gohir.A08G173900' => 'ghi', 'Gohir.A09G194900' => 'ghi', 'Gohir.A10G204100' => 'ghi', 'Gohir.A11G080600' => 'ghi', 'Gohir.A11G327500' => 'ghi', 'Gohir.A12G101800' => 'ghi', 'Gohir.D01G211200' => 'ghi', 'Gohir.D07G139200' => 'ghi', 'Gohir.D07G152100' => 'ghi', 'Gohir.D08G192600' => 'ghi', 'Gohir.D09G189200' => 'ghi', 'Gohir.D10G212000' => 'ghi', 'Gohir.D11G085200' => 'ghi', 'Gohir.D11G346400' => 'ghi', 'Gohir.D12G104800' => 'ghi', 'Gorai.001G151300' => 'gra', 'Gorai.001G174100' => 'gra', 'Gorai.002G257000' => 'gra', 'Gorai.004G202600' => 'gra', 'Gorai.007G090900' => 'gra', 'Gorai.007G376700' => 'gra', 'Gorai.008G114100' => 'gra', 'Gorai.011G237900' => 'gra', 'GSVIVG01005450001' => 'vvi', 'GSVIVG01016232001' => 'vvi', 'GSVIVG01026157001' => 'vvi', 'GSVIVG01027419001' => 'vvi', 'GSVIVG01027631001' => 'vvi', 'GSVIVG01034143001' => 'vvi', 'HanXRQChr03g0093921' => 'han', 'HanXRQChr04g0120001' => 'han', 'HanXRQChr04g0122561' => 'han', 'HanXRQChr09g0246851' => 'han', 'HanXRQChr10g0293311' => 'han', 'HanXRQChr13g0425231' => 'han', 'HanXRQChr16g0532571' => 'han', 'Haze_09050' => 'cav', 'Haze_15715' => 'cav', 'Haze_15716' => 'cav', 'Haze_16803' => 'cav', 'Haze_16850' => 'cav', 'Hma1.2p1_0301F.1_g118655' => 'hma', 'Hma1.2p1_0309F.1_g120590' => 'hma', 'Hma1.2p1_0936F.1_g238900' => 'hma', 'Hma1.2p1_3552F.1_g336740' => 'hma', 'HPP92_003520' => 'vpl', 'HPP92_006628' => 'vpl', 'HPP92_006645' => 'vpl', 'HPP92_014669' => 'vpl', 'HPP92_015077' => 'vpl', 'Hund16742' => 'sun', 'Hund17022' => 'sun', 'Lalb_Chr02g0152131' => 'lal', 'Lalb_Chr05g0225371' => 'lal', 'Lalb_Chr07g0189841' => 'lal', 'Lalb_Chr07g0192961' => 'lal', 'Lalb_Chr12g0208221' => 'lal', 'Lalb_Chr13g0291211' => 'lal', 'Lalb_Chr13g0291781' => 'lal', 'Lalb_Chr18g0044651' => 'lal', 'Lalb_Chr21g0313731' => 'lal', 'Lj1g0022533' => 'lja', 'Lj2A18T50' => 'lonja', 'Lj2A92G93' => 'lonja', 'Lj3A965T73' => 'lonja', 'Lj3g0000673' => 'lja', 'Lj3g0002666' => 'lja', 'Lj4g0016985' => 'lja', 'Lj5g0003625' => 'lja', 'Lj7A529G36' => 'lonja', 'Lj9A569T49' => 'lonja', 'Lj9A604T63' => 'lonja', 'Lsat_1_v5_gn_3_132060' => 'lsa', 'Lsat_1_v5_gn_4_68941' => 'lsa', 'Lsat_1_v5_gn_5_95580' => 'lsa', 'Lsat_1_v5_gn_7_161' => 'lsa', 'Lsat_1_v5_gn_7_7041' => 'lsa', 'Lsat_1_v5_gn_9_33481' => 'lsa', 'Lsat_1_v5_gn_9_68260' => 'lsa', 'Manes.01G073100' => 'mes', 'Manes.01G266300' => 'mes', 'Manes.02G033300' => 'mes', 'Manes.05G017900' => 'mes', 'Manes.05G046100' => 'mes', 'Manes.08G080900' => 'mes', 'Manes.10G049400' => 'mes', 'Mapoly0009s0186' => 'mpo', 'Mapoly0036s0118' => 'mpo', 'Mapoly0101s0046' => 'mpo', 'MBI04_g30218_MAGBIO' => 'mbi', 'MBI04_g35564_MAGBIO' => 'mbi', 'MBI12_g34011_MAGBIO' => 'mbi', 'MBI14_g04655_MAGBIO' => 'mbi', 'MCO07G653' => 'mco', 'MCO10G173' => 'mco', 'MD01G1087100' => 'mdo', 'MD01G1104200' => 'mdo', 'MD02G1205100' => 'mdo', 'MD04G1079200' => 'mdo', 'MD04G1131400' => 'mdo', 'MD07G1121600' => 'mdo', 'MD07G1157300' => 'mdo', 'MD07G1171000' => 'mdo', 'MD12G1144500' => 'mdo', 'Medtr1g094610' => 'mtr', 'Medtr4g021795' => 'mtr', 'Medtr4g023760' => 'mtr', 'Medtr7g118050' => 'mtr', 'MELO3C005582.2' => 'cme', 'MELO3C005989.2' => 'cme', 'MELO3C006192.2' => 'cme', 'MELO3C009248.2' => 'cme', 'MELO3C019817.2' => 'cme', 'Migut.B01625' => 'egut', 'Migut.B01915' => 'egut', 'Migut.F01721' => 'egut', 'Migut.J00314' => 'egut', 'MSTRG.20742' => 'ama', 'MSTRG.8134' => 'ama', 'Nitab4.5_0000096g0010' => 'nta', 'Nitab4.5_0000202g0030' => 'nta', 'Nitab4.5_0000216g0370' => 'nta', 'Nitab4.5_0000457g0230' => 'nta', 'Nitab4.5_0001702g0170' => 'nta', 'Nitab4.5_0003607g0010' => 'nta', 'Nitab4.5_0004917g0020' => 'nta', 'Nitab4.5_0007059g0010' => 'nta', 'Nitab4.5_0007184g0010' => 'nta', 'Nitab4.5_0007346g0020' => 'nta', 'Nn1g00410' => 'nnu', 'Nn1g01252' => 'nnu', 'Nn2g11168' => 'nnu', 'Nn2g13403' => 'nnu', 'Nn2g13760' => 'nnu', 'Nn4g26380' => 'nnu', 'Oeu000806.2' => 'oeu', 'Oeu005788.1' => 'oeu', 'Oeu006900.3' => 'oeu', 'Oeu007797.1' => 'oeu', 'Oeu011932.1' => 'oeu', 'Oeu022739.1' => 'oeu', 'Oeu037918.1' => 'oeu', 'Oeu055490.2' => 'oeu', 'Os01g0844400' => 'osa', 'Os02g0819100' => 'osa', 'Os03g0804300' => 'osa', 'Os05g0458000' => 'osa', 'Os07g0467800' => 'osa', 'Os12g0602200' => 'osa', 'Peaxi162Scf00013g03444' => 'pax', 'Peaxi162Scf00094g01120' => 'pax', 'Peaxi162Scf00191g01211' => 'pax', 'Peaxi162Scf00238g01110' => 'pax', 'Peaxi162Scf00330g00719' => 'pax', 'Peaxi162Scf00627g00018' => 'pax', 'PGR031G2686' => 'pgr', 'PGR042G0809' => 'pgr', 'PGR142G0193' => 'pgr', 'PGSC0003DMG400011066' => 'stu', 'PGSC0003DMG400012041' => 'stu', 'PGSC0003DMG400013678' => 'stu', 'PGSC0003DMG400023477' => 'stu', 'PGSC0003DMG400025956' => 'stu', 'PGSC0003DMG401019151' => 'stu', 'Phvul.006G116400' => 'pvu', 'Phvul.007G097300' => 'pvu', 'Phvul.010G015000' => 'pvu', 'Phvul.010G083900' => 'pvu', 'Potri.001G117100' => 'ptr', 'Potri.002G147300' => 'ptr', 'Potri.003G115600' => 'ptr', 'Potri.006G087400' => 'ptr', 'Potri.010G226100' => 'ptr', 'Potri.014G069200' => 'ptr', 'Potri.014G104000' => 'ptr', 'Potri.016G100200' => 'ptr', 'Pp3c10_20450' => 'ppa', 'Pp3c1_42400' => 'ppa', 'Pp3c3_24390' => 'ppa', 'Pp3c3_2860' => 'ppa', 'PRCOL_00003193' => 'pco', 'Prupe.2G144500' => 'ppe', 'Prupe.2G195700' => 'ppe', 'Prupe.2G209800' => 'ppe', 'Prupe.5G080000' => 'ppe', 'Prupe.6G257900' => 'ppe', 'Psat3g001160' => 'psa', 'Psat6g181880' => 'psa', 'Psat7g233720' => 'psa', 'PSO063G7587' => 'pso', 'PSO339G2145' => 'pso', 'PSO339G3369' => 'pso', 'PSO478G2747' => 'pso', 'PSO513G0140' => 'pso', 'PSO782G1614' => 'pso', 'PSO782G4889' => 'pso', 'PSO782G5485' => 'pso', 'PSO801G0241' => 'pso', 'QL07p048854' => 'qlo', 'QL08p046745' => 'qlo', 'QL08p052606' => 'qlo', 'QL08p053414' => 'qlo', 'QL08p054868' => 'qlo', 'RcHm_v2.0_Chr1g0350251' => 'rch', 'RcHm_v2.0_Chr1g0360851' => 'rch', 'RcHm_v2.0_Chr1g0362791' => 'rch', 'RcHm_v2.0_Chr3g0466281' => 'rch', 'RcHm_v2.0_Chr7g0201481' => 'rch', 'Rhsim01G0148600' => 'rsi', 'Rhsim05G0194400' => 'rsi', 'Rhsim07G0000700' => 'rsi', 'Rhsim07G0000800' => 'rsi', 'Rhsim07G0027900' => 'rsi', 'Rhsim09G0149500' => 'rsi', 'RhsimUnG0186900' => 'rsi', 'Sabra01G0089900' => 'sbr', 'Sabra02G0114700' => 'sbr', 'Sabra02G0116300' => 'sbr', 'Sabra03G0080100' => 'sbr', 'Sabra08G0024300' => 'sbr', 'Sabra10G0174300' => 'sbr', 'Sabra14G0048900' => 'sbr', 'Sabra14G0076500' => 'sbr', 'SalBow5G2513' => 'sbo', 'Sc01g0002300' => 'sci', 'Sc01g0004450' => 'sci', 'Sc06g0001680' => 'sci', 'Sc23g0003580' => 'sci', 'Sed0000913' => 'sed', 'Sed0001655' => 'sed', 'Sed0007745' => 'sed', 'Sed0010951' => 'sed', 'Sed0017599' => 'sed', 'Sed0021405' => 'sed', 'Sed0022810' => 'sed', 'SEGI_07099' => 'sgi', 'SEGI_11931' => 'sgi', 'SEGI_13187' => 'sgi', 'SEGI_29958' => 'sgi', 'SEGI_36351' => 'sgi', 'SGA_v2.0_scaffold126G33770' => 'sas', 'SGA_v2.0_scaffold153G37003' => 'sas', 'SGA_v2.0_scaffold2G01359' => 'sas', 'SGA_v2.0_scaffold5G03064' => 'sas', 'SGA_v2.0_scaffold95G28903' => 'sas', 'SHI12701' => 'shi', 'SHI26410' => 'shi', 'SHI38997' => 'shi', 'SHI53759' => 'shi', 'SHI53886' => 'shi', 'SHI54714' => 'shi', 'SMO011G0041' => 'smo', 'SMO146G0251' => 'smo', 'SMO160G0004' => 'smo', 'SMO174G0057' => 'smo', 'SMO244G0089' => 'smo', 'SMO296G0011' => 'smo', 'Solyc01g091280.3' => 'sly', 'Solyc05g047610.3' => 'sly', 'Solyc05g047640.3' => 'sly', 'Solyc05g055630.3' => 'sly', 'Solyc10g018160.2' => 'sly', 'Solyc10g084820.2' => 'sly', 'Solyc10g086565.2' => 'sly', 'Sopen01g037030' => 'spe', 'Sopen05g027920' => 'spe', 'Sopen05g034070' => 'spe', 'Sopen10g007260' => 'spe', 'Sopen10g034260' => 'spe', 'Sopen10g035950' => 'spe', 'Sp3g07710' => 'spa', 'Sp4g27420' => 'spa', 'Sp5g02450' => 'spa', 'Sp6g01280' => 'spa', 'Sp6g38480' => 'spa', 'Sp7g20780' => 'spa', 'TAR374G1413' => 'tar', 'TAR623G1777' => 'tar', 'TAR629G2370' => 'tar', 'TAR633G1759' => 'tar', 'TAR636G3387' => 'tar', 'THA.LOC104802447' => 'tha', 'THA.LOC104813916' => 'tha', 'THA.LOC104816423' => 'tha', 'THA.LOC104817246' => 'tha', 'THA.LOC104825895' => 'tha', 'Thecc.01G335200' => 'tca', 'Thecc.01G377400' => 'tca', 'Thecc.03G262200' => 'tca', 'Thecc.05G036800' => 'tca', 'Thecc.10G080500' => 'tca', 'Thecc.10G080800' => 'tca', 'Thhalv10001560m.g' => 'esa', 'Thhalv10006120m.g' => 'esa', 'Thhalv10014375m.g' => 'esa', 'Thhalv10021264m.g' => 'esa', 'Thhalv10028856m.g' => 'esa', 'TPR.G1914' => 'tpr', 'TPR.G4757' => 'tpr', 'TPR.G5595' => 'tpr', 'TWI14G0952' => 'twi', 'TWI14G1307' => 'twi', 'TWI38G2143' => 'twi', 'TWI59G0826' => 'twi', 'TWI77G0527' => 'twi', 'TWI81G0150' => 'twi', 'unitig_21.g21018' => 'ugi', 'unitig_26.g9725' => 'ugi', 'unitig_744.g24653' => 'ugi', 'unitig_749.g13778' => 'ugi', 'unitig_899.g15035' => 'ugi', 'vmacro04296' => 'vma', 'vmacro04852' => 'vma', 'vmacro13404' => 'vma', 'vmacro20169' => 'vma', 'vmacro21014' => 'vma', 'VMungo0331G0237' => 'vmu', 'VMungo0331G0706' => 'vmu', 'VMungo0331G1361' => 'vmu', 'VMungo0331G1489' => 'vmu', 'VMungo0540G1037' => 'vmu', 'VMungo0720G2487' => 'vmu', 'VMungo0720G2721' => 'vmu', 'Zm00001eb086860' => 'zma', 'Zm00001eb104760' => 'zma', 'Zm00001eb148220' => 'zma', 'Zm00001eb259030' => 'zma', 'Zm00001eb289590' => 'zma', 'Zm00001eb420150' => 'zma' ), 'gf_id' => 'HOM05D000968', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000968' ), 'data_identifier' => 'HOM05D000968', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000968', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p31690' => 'bna', 'A03p36040' => 'bna', 'A03p53730' => 'bna', 'A04p01410' => 'bna', 'A05p05420' => 'bna', 'A05p39630' => 'bna', 'A05p39640' => 'bna', 'A09p00970' => 'bna', 'A09p53060' => 'bna', 'A10p31890' => 'bna', 'Aa31LG10G15040' => 'aar', 'Aa31LG1G21090' => 'aar', 'Aa31LG1G26900' => 'aar', 'Aa31LG3G1820' => 'aar', 'Aa31LG5G1100' => 'aar', 'Aa31LG6G4740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2265' => 'aag', 'Actinidia07998' => 'ach', 'Actinidia11266' => 'ach', 'Actinidia12682' => 'ach', 'Actinidia26479' => 'ach', 'Actinidia31406' => 'ach', 'Actinidia32437' => 'ach', 'Actinidia38862' => 'ach', 'Ah.05g174230' => 'amhyb', 'Ah.05g179070' => 'amhyb', 'Ah.05g179090' => 'amhyb', 'Ah.12g059950' => 'amhyb', 'AL3G20480' => 'aly', 'AL4G44520' => 'aly', 'AL5G43110' => 'aly', 'AL6G13890' => 'aly', 'AL6G52620' => 'aly', 'AL7G30830' => 'aly', 'Aqoxy1G00899' => 'aox', 'Aqoxy5G04333' => 'aox', 'Aqoxy7G00641' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3IZ0NN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4EF6AW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W9P8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79GA3M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C43NQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFCU6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G95YVJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCHK29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LU1UG8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX91RN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGB4B1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8DA0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9H7JI' => 'arhy', 'AT3G09320' => 'ath', 'AT3G60800' => 'ath', 'AT4G00840' => 'ath', 'AT4G22750' => 'ath', 'AT5G04270' => 'ath', 'ATR0090G003' => 'atr', 'ATR0559G349' => 'atr', 'ATR0680G261' => 'atr', 'ATR0810G048' => 'atr', 'Atru.chr12.831' => 'acertr', 'Atru.chr5.303' => 'acertr', 'Atru.chr5.748' => 'acertr', 'Atru.chr8.1999' => 'acertr', 'Atru.chr9.1436' => 'acertr', 'AUR62004211' => 'cqu', 'AUR62004548' => 'cqu', 'AUR62013637' => 'cqu', 'AUR62022662' => 'cqu', 'AUR62025777' => 'cqu', 'AUR62042386' => 'cqu', 'BcaB01g02310' => 'bca', 'BcaB01g06062' => 'bca', 'BcaB02g08975' => 'bca', 'BcaB02g08980' => 'bca', 'BcaC01g04228' => 'bca', 'BcaC01g06830' => 'bca', 'BcaC02g10186' => 'bca', 'BcaC02g12214' => 'bca', 'BcaC04g24101' => 'bca', 'BcaC05g29520' => 'bca', 'BcaC05g29661' => 'bca', 'BcaC06g32130' => 'bca', 'BcaC06g32131' => 'bca', 'BcaC07g40601' => 'bca', 'BcaC07g42641' => 'bca', 'BcaNung01038' => 'bca', 'BcaNung01676' => 'bca', 'BcaNung02480' => 'bca', 'BcaNung07376' => 'bca', 'BolC3t16146H' => 'bol', 'BolC3t16637H' => 'bol', 'BolC4t22257H' => 'bol', 'BolC4t24728H' => 'bol', 'BolC5t34517H' => 'bol', 'BolC7t45703H' => 'bol', 'BolC8t51166H' => 'bol', 'BolC9t53038H' => 'bol', 'BolC9t60000H' => 'bol', 'BraA01t01345Z' => 'bra', 'BraA01t01346Z' => 'bra', 'BraA01t01348Z' => 'bra', 'BraA03t12347Z' => 'bra', 'BraA03t12775Z' => 'bra', 'BraA03t14439Z' => 'bra', 'BraA04t15860Z' => 'bra', 'BraA05t19511Z' => 'bra', 'BraA05t22746Z' => 'bra', 'BraA09t35767Z' => 'bra', 'BraA09t40732Z' => 'bra', 'BraA10t45233Z' => 'bra', 'C03p38720' => 'bna', 'C03p43680' => 'bna', 'C04p06350' => 'bna', 'C04p31800' => 'bna', 'C05p58680' => 'bna', 'C07p52110' => 'bna', 'C08p35760' => 'bna', 'C09p01050' => 'bna', 'C09p72600' => 'bna', 'CAN.G106.2' => 'can', 'CAN.G1482.1' => 'can', 'CAN.G324.12' => 'can', 'CAN.G388.20' => 'can', 'CAN.G412.7' => 'can', 'CAN.G694.32' => 'can', 'CAN.G92.12' => 'can', 'CANSAT11G2353' => 'cansat', 'CANSAT21G1398' => 'cansat', 'CANSAT56G2456' => 'cansat', 'CANSAT56G3031' => 'cansat', 'CANSAT56G4539' => 'cansat', 'CARHR083680' => 'chi', 'CARHR171190' => 'chi', 'CARHR209010' => 'chi', 'CARHR229680' => 'chi', 'CARHR249490' => 'chi', 'Carub.0003s0844' => 'cru', 'Carub.0005s2755' => 'cru', 'Carub.0006s0322' => 'cru', 'Carub.0006s3586' => 'cru', 'Carub.0007s1855' => 'cru', 'Ca_07808_v3' => 'car', 'Ca_09535_v3' => 'car', 'Ca_10548_v3' => 'car', 'Ca_19913_v3' => 'car', 'Ca_19916_v3' => 'car', 'Ca_19975_v3' => 'car', 'CBR_g22876' => 'cbr', 'CBR_g22879' => 'cbr', 'CBR_g38491' => 'cbr', 'CBR_g54185' => 'cbr', 'CBR_g54190' => 'cbr', 'Cc02_g11020' => 'ccan', 'Cc02_g23920' => 'ccan', 'Cc02_g39860' => 'ccan', 'Cc02_g39870' => 'ccan', 'Cc03_g06760' => 'ccan', 'Cc06_g02450' => 'ccan', 'Cc09_g09450' => 'ccan', 'CDE02G1959' => 'cde', 'CDE04G0600' => 'cde', 'CDE07G1996' => 'cde', 'CDE07G2078' => 'cde', 'CDE11G0611' => 'cde', 'Cfa001683' => 'cfa', 'Cfa001734' => 'cfa', 'Cfa001737' => 'cfa', 'Cfa003751' => 'cfa', 'Cfa012019' => 'cfa', 'Cfa017353' => 'cfa', 'Cfa017732' => 'cfa', 'Cfa022464' => 'cfa', 'Ciclev10012400m.g' => 'ccl', 'Ciclev10021242m.g' => 'ccl', 'Ciclev10021302m.g' => 'ccl', 'Ciclev10021463m.g' => 'ccl', 'Ciclev10032359m.g' => 'ccl', 'CiPaw.01G081000' => 'cil', 'CiPaw.01G262500' => 'cil', 'CiPaw.01G269800' => 'cil', 'CiPaw.02G168400' => 'cil', 'CiPaw.05G119500' => 'cil', 'CiPaw.11G147300' => 'cil', 'ClCG01G003630' => 'cla', 'ClCG05G000510' => 'cla', 'ClCG05G002300' => 'cla', 'ClCG08G007650' => 'cla', 'ClCG10G021250' => 'cla', 'COL.COLO4_06218' => 'col', 'COL.COLO4_12538' => 'col', 'COL.COLO4_14775' => 'col', 'COL.COLO4_23875' => 'col', 'Cpa.g.sc141.16' => 'cpa', 'Cpa.g.sc169.16' => 'cpa', 'Cpa.g.sc244.4' => 'cpa', 'Cpa.g.sc244.5' => 'cpa', 'Cpa.g.sc29.87' => 'cpa', 'Cpa.g.sc53.115' => 'cpa', 'Cre03.g207502' => 'cre', 'Cre06.g277000' => 'cre', 'Cre09.g394050' => 'cre', 'CsaV3_3G007680' => 'csa', 'CsaV3_3G009710' => 'csa', 'CsaV3_3G034790' => 'csa', 'CsaV3_5G003750' => 'csa', 'CsaV3_6G036620' => 'csa', 'CSS0002288' => 'camsi', 'CSS0011250' => 'camsi', 'CSS0021619' => 'camsi', 'CSS0046701' => 'camsi', 'DCAR_006420' => 'dca', 'DCAR_006865' => 'dca', 'DCAR_008558' => 'dca', 'DCAR_028754' => 'dca', 'DCAR_028755' => 'dca', 'Dinv31218' => 'din', 'Dinv32371' => 'din', 'Dinv34250' => 'din', 'Dinv37156' => 'din', 'Dinv43704' => 'din', 'Duzib093G1811' => 'dzi', 'Duzib106G1622' => 'dzi', 'Duzib114G0504' => 'dzi', 'Duzib128G0338' => 'dzi', 'Duzib128G1577' => 'dzi', 'Duzib133G0104' => 'dzi', 'Duzib133G1080' => 'dzi', 'Duzib138G0324' => 'dzi', 'Duzib138G0394' => 'dzi', 'Duzib205G0122' => 'dzi', 'Duzib268G1020' => 'dzi', 'Duzib268G1359' => 'dzi', 'ECA232G3929' => 'eca', 'ECA236G2210' => 'eca', 'ECA236G2287' => 'eca', 'ECA240G4568' => 'eca', 'ECA247G0894' => 'eca', 'EL10Ac1g00200' => 'bvu', 'EL10Ac1g00886' => 'bvu', 'EL10As1g23091' => 'bvu', 'EL10As1g23092' => 'bvu', 'Eucgr.A01284' => 'egr', 'Eucgr.A01285' => 'egr', 'Eucgr.D02456' => 'egr', 'Eucgr.E00018' => 'egr', 'Eucgr.E01439' => 'egr', 'Eucgr.G02859' => 'egr', 'FAN01G0168' => 'fan', 'FAN01G0453' => 'fan', 'FAN01G2761' => 'fan', 'FAN02G1239' => 'fan', 'FAN03G0645' => 'fan', 'FAN03G2707' => 'fan', 'FAN03G2978' => 'fan', 'FAN04G0227' => 'fan', 'FAN06G0091' => 'fan', 'FAN06G1418' => 'fan', 'FAN06G1512' => 'fan', 'FAN06G1986' => 'fan', 'FAN06G2905' => 'fan', 'FAN06G4325' => 'fan', 'FAN08G0033' => 'fan', 'FAN09G0642' => 'fan', 'FAN10G1763' => 'fan', 'FAN10G2026' => 'fan', 'FAN10G2513' => 'fan', 'FAN10G3402' => 'fan', 'FAN10G3564' => 'fan', 'FAN10G3987' => 'fan', 'FAN13G1490' => 'fan', 'FAN14G5857' => 'fan', 'FAN18G1188' => 'fan', 'FvH4_5g00750' => 'fve', 'FvH4_6g13410' => 'fve', 'FvH4_7g11740' => 'fve', 'FvH4_7g17410' => 'fve', 'FvH4_7g18860' => 'fve', 'Glyma.01G099100' => 'gma', 'Glyma.01G142300' => 'gma', 'Glyma.03G025500' => 'gma', 'Glyma.03G069700' => 'gma', 'Glyma.03G260000' => 'gma', 'Glyma.09G269800' => 'gma', 'Glyma.10G208700' => 'gma', 'Glyma.18G220400' => 'gma', 'Glyma.20G182000' => 'gma', 'Gohir.A01G221726' => 'ghi', 'Gohir.A07G134600' => 'ghi', 'Gohir.A07G146000' => 'ghi', 'Gohir.A08G173900' => 'ghi', 'Gohir.A09G194900' => 'ghi', 'Gohir.A10G204100' => 'ghi', 'Gohir.A11G080600' => 'ghi', 'Gohir.A11G327500' => 'ghi', 'Gohir.A12G101800' => 'ghi', 'Gohir.D01G211200' => 'ghi', 'Gohir.D07G139200' => 'ghi', 'Gohir.D07G152100' => 'ghi', 'Gohir.D08G192600' => 'ghi', 'Gohir.D09G189200' => 'ghi', 'Gohir.D10G212000' => 'ghi', 'Gohir.D11G085200' => 'ghi', 'Gohir.D11G346400' => 'ghi', 'Gohir.D12G104800' => 'ghi', 'Gorai.001G151300' => 'gra', 'Gorai.001G174100' => 'gra', 'Gorai.002G257000' => 'gra', 'Gorai.004G202600' => 'gra', 'Gorai.007G090900' => 'gra', 'Gorai.007G376700' => 'gra', 'Gorai.008G114100' => 'gra', 'Gorai.011G237900' => 'gra', 'GSVIVG01005450001' => 'vvi', 'GSVIVG01016232001' => 'vvi', 'GSVIVG01026157001' => 'vvi', 'GSVIVG01027419001' => 'vvi', 'GSVIVG01027631001' => 'vvi', 'GSVIVG01034143001' => 'vvi', 'HanXRQChr03g0093921' => 'han', 'HanXRQChr04g0120001' => 'han', 'HanXRQChr04g0122561' => 'han', 'HanXRQChr09g0246851' => 'han', 'HanXRQChr10g0293311' => 'han', 'HanXRQChr13g0425231' => 'han', 'HanXRQChr16g0532571' => 'han', 'Haze_09050' => 'cav', 'Haze_15715' => 'cav', 'Haze_15716' => 'cav', 'Haze_16803' => 'cav', 'Haze_16850' => 'cav', 'Hma1.2p1_0301F.1_g118655' => 'hma', 'Hma1.2p1_0309F.1_g120590' => 'hma', 'Hma1.2p1_0936F.1_g238900' => 'hma', 'Hma1.2p1_3552F.1_g336740' => 'hma', 'HPP92_003520' => 'vpl', 'HPP92_006628' => 'vpl', 'HPP92_006645' => 'vpl', 'HPP92_014669' => 'vpl', 'HPP92_015077' => 'vpl', 'Hund16742' => 'sun', 'Hund17022' => 'sun', 'Lalb_Chr02g0152131' => 'lal', 'Lalb_Chr05g0225371' => 'lal', 'Lalb_Chr07g0189841' => 'lal', 'Lalb_Chr07g0192961' => 'lal', 'Lalb_Chr12g0208221' => 'lal', 'Lalb_Chr13g0291211' => 'lal', 'Lalb_Chr13g0291781' => 'lal', 'Lalb_Chr18g0044651' => 'lal', 'Lalb_Chr21g0313731' => 'lal', 'Lj1g0022533' => 'lja', 'Lj2A18T50' => 'lonja', 'Lj2A92G93' => 'lonja', 'Lj3A965T73' => 'lonja', 'Lj3g0000673' => 'lja', 'Lj3g0002666' => 'lja', 'Lj4g0016985' => 'lja', 'Lj5g0003625' => 'lja', 'Lj7A529G36' => 'lonja', 'Lj9A569T49' => 'lonja', 'Lj9A604T63' => 'lonja', 'Lsat_1_v5_gn_3_132060' => 'lsa', 'Lsat_1_v5_gn_4_68941' => 'lsa', 'Lsat_1_v5_gn_5_95580' => 'lsa', 'Lsat_1_v5_gn_7_161' => 'lsa', 'Lsat_1_v5_gn_7_7041' => 'lsa', 'Lsat_1_v5_gn_9_33481' => 'lsa', 'Lsat_1_v5_gn_9_68260' => 'lsa', 'Manes.01G073100' => 'mes', 'Manes.01G266300' => 'mes', 'Manes.02G033300' => 'mes', 'Manes.05G017900' => 'mes', 'Manes.05G046100' => 'mes', 'Manes.08G080900' => 'mes', 'Manes.10G049400' => 'mes', 'Mapoly0009s0186' => 'mpo', 'Mapoly0036s0118' => 'mpo', 'Mapoly0101s0046' => 'mpo', 'MBI04_g30218_MAGBIO' => 'mbi', 'MBI04_g35564_MAGBIO' => 'mbi', 'MBI12_g34011_MAGBIO' => 'mbi', 'MBI14_g04655_MAGBIO' => 'mbi', 'MCO07G653' => 'mco', 'MCO10G173' => 'mco', 'MD01G1087100' => 'mdo', 'MD01G1104200' => 'mdo', 'MD02G1205100' => 'mdo', 'MD04G1079200' => 'mdo', 'MD04G1131400' => 'mdo', 'MD07G1121600' => 'mdo', 'MD07G1157300' => 'mdo', 'MD07G1171000' => 'mdo', 'MD12G1144500' => 'mdo', 'Medtr1g094610' => 'mtr', 'Medtr4g021795' => 'mtr', 'Medtr4g023760' => 'mtr', 'Medtr7g118050' => 'mtr', 'MELO3C005582.2' => 'cme', 'MELO3C005989.2' => 'cme', 'MELO3C006192.2' => 'cme', 'MELO3C009248.2' => 'cme', 'MELO3C019817.2' => 'cme', 'Migut.B01625' => 'egut', 'Migut.B01915' => 'egut', 'Migut.F01721' => 'egut', 'Migut.J00314' => 'egut', 'MSTRG.20742' => 'ama', 'MSTRG.8134' => 'ama', 'Nitab4.5_0000096g0010' => 'nta', 'Nitab4.5_0000202g0030' => 'nta', 'Nitab4.5_0000216g0370' => 'nta', 'Nitab4.5_0000457g0230' => 'nta', 'Nitab4.5_0001702g0170' => 'nta', 'Nitab4.5_0003607g0010' => 'nta', 'Nitab4.5_0004917g0020' => 'nta', 'Nitab4.5_0007059g0010' => 'nta', 'Nitab4.5_0007184g0010' => 'nta', 'Nitab4.5_0007346g0020' => 'nta', 'Nn1g00410' => 'nnu', 'Nn1g01252' => 'nnu', 'Nn2g11168' => 'nnu', 'Nn2g13403' => 'nnu', 'Nn2g13760' => 'nnu', 'Nn4g26380' => 'nnu', 'Oeu000806.2' => 'oeu', 'Oeu005788.1' => 'oeu', 'Oeu006900.3' => 'oeu', 'Oeu007797.1' => 'oeu', 'Oeu011932.1' => 'oeu', 'Oeu022739.1' => 'oeu', 'Oeu037918.1' => 'oeu', 'Oeu055490.2' => 'oeu', 'Os01g0844400' => 'osa', 'Os02g0819100' => 'osa', 'Os03g0804300' => 'osa', 'Os05g0458000' => 'osa', 'Os07g0467800' => 'osa', 'Os12g0602200' => 'osa', 'Peaxi162Scf00013g03444' => 'pax', 'Peaxi162Scf00094g01120' => 'pax', 'Peaxi162Scf00191g01211' => 'pax', 'Peaxi162Scf00238g01110' => 'pax', 'Peaxi162Scf00330g00719' => 'pax', 'Peaxi162Scf00627g00018' => 'pax', 'PGR031G2686' => 'pgr', 'PGR042G0809' => 'pgr', 'PGR142G0193' => 'pgr', 'PGSC0003DMG400011066' => 'stu', 'PGSC0003DMG400012041' => 'stu', 'PGSC0003DMG400013678' => 'stu', 'PGSC0003DMG400023477' => 'stu', 'PGSC0003DMG400025956' => 'stu', 'PGSC0003DMG401019151' => 'stu', 'Phvul.006G116400' => 'pvu', 'Phvul.007G097300' => 'pvu', 'Phvul.010G015000' => 'pvu', 'Phvul.010G083900' => 'pvu', 'Potri.001G117100' => 'ptr', 'Potri.002G147300' => 'ptr', 'Potri.003G115600' => 'ptr', 'Potri.006G087400' => 'ptr', 'Potri.010G226100' => 'ptr', 'Potri.014G069200' => 'ptr', 'Potri.014G104000' => 'ptr', 'Potri.016G100200' => 'ptr', 'Pp3c10_20450' => 'ppa', 'Pp3c1_42400' => 'ppa', 'Pp3c3_24390' => 'ppa', 'Pp3c3_2860' => 'ppa', 'PRCOL_00003193' => 'pco', 'Prupe.2G144500' => 'ppe', 'Prupe.2G195700' => 'ppe', 'Prupe.2G209800' => 'ppe', 'Prupe.5G080000' => 'ppe', 'Prupe.6G257900' => 'ppe', 'Psat3g001160' => 'psa', 'Psat6g181880' => 'psa', 'Psat7g233720' => 'psa', 'PSO063G7587' => 'pso', 'PSO339G2145' => 'pso', 'PSO339G3369' => 'pso', 'PSO478G2747' => 'pso', 'PSO513G0140' => 'pso', 'PSO782G1614' => 'pso', 'PSO782G4889' => 'pso', 'PSO782G5485' => 'pso', 'PSO801G0241' => 'pso', 'QL07p048854' => 'qlo', 'QL08p046745' => 'qlo', 'QL08p052606' => 'qlo', 'QL08p053414' => 'qlo', 'QL08p054868' => 'qlo', 'RcHm_v2.0_Chr1g0350251' => 'rch', 'RcHm_v2.0_Chr1g0360851' => 'rch', 'RcHm_v2.0_Chr1g0362791' => 'rch', 'RcHm_v2.0_Chr3g0466281' => 'rch', 'RcHm_v2.0_Chr7g0201481' => 'rch', 'Rhsim01G0148600' => 'rsi', 'Rhsim05G0194400' => 'rsi', 'Rhsim07G0000700' => 'rsi', 'Rhsim07G0000800' => 'rsi', 'Rhsim07G0027900' => 'rsi', 'Rhsim09G0149500' => 'rsi', 'RhsimUnG0186900' => 'rsi', 'Sabra01G0089900' => 'sbr', 'Sabra02G0114700' => 'sbr', 'Sabra02G0116300' => 'sbr', 'Sabra03G0080100' => 'sbr', 'Sabra08G0024300' => 'sbr', 'Sabra10G0174300' => 'sbr', 'Sabra14G0048900' => 'sbr', 'Sabra14G0076500' => 'sbr', 'SalBow5G2513' => 'sbo', 'Sc01g0002300' => 'sci', 'Sc01g0004450' => 'sci', 'Sc06g0001680' => 'sci', 'Sc23g0003580' => 'sci', 'Sed0000913' => 'sed', 'Sed0001655' => 'sed', 'Sed0007745' => 'sed', 'Sed0010951' => 'sed', 'Sed0017599' => 'sed', 'Sed0021405' => 'sed', 'Sed0022810' => 'sed', 'SEGI_07099' => 'sgi', 'SEGI_11931' => 'sgi', 'SEGI_13187' => 'sgi', 'SEGI_29958' => 'sgi', 'SEGI_36351' => 'sgi', 'SGA_v2.0_scaffold126G33770' => 'sas', 'SGA_v2.0_scaffold153G37003' => 'sas', 'SGA_v2.0_scaffold2G01359' => 'sas', 'SGA_v2.0_scaffold5G03064' => 'sas', 'SGA_v2.0_scaffold95G28903' => 'sas', 'SHI12701' => 'shi', 'SHI26410' => 'shi', 'SHI38997' => 'shi', 'SHI53759' => 'shi', 'SHI53886' => 'shi', 'SHI54714' => 'shi', 'SMO011G0041' => 'smo', 'SMO146G0251' => 'smo', 'SMO160G0004' => 'smo', 'SMO174G0057' => 'smo', 'SMO244G0089' => 'smo', 'SMO296G0011' => 'smo', 'Solyc01g091280.3' => 'sly', 'Solyc05g047610.3' => 'sly', 'Solyc05g047640.3' => 'sly', 'Solyc05g055630.3' => 'sly', 'Solyc10g018160.2' => 'sly', 'Solyc10g084820.2' => 'sly', 'Solyc10g086565.2' => 'sly', 'Sopen01g037030' => 'spe', 'Sopen05g027920' => 'spe', 'Sopen05g034070' => 'spe', 'Sopen10g007260' => 'spe', 'Sopen10g034260' => 'spe', 'Sopen10g035950' => 'spe', 'Sp3g07710' => 'spa', 'Sp4g27420' => 'spa', 'Sp5g02450' => 'spa', 'Sp6g01280' => 'spa', 'Sp6g38480' => 'spa', 'Sp7g20780' => 'spa', 'TAR374G1413' => 'tar', 'TAR623G1777' => 'tar', 'TAR629G2370' => 'tar', 'TAR633G1759' => 'tar', 'TAR636G3387' => 'tar', 'THA.LOC104802447' => 'tha', 'THA.LOC104813916' => 'tha', 'THA.LOC104816423' => 'tha', 'THA.LOC104817246' => 'tha', 'THA.LOC104825895' => 'tha', 'Thecc.01G335200' => 'tca', 'Thecc.01G377400' => 'tca', 'Thecc.03G262200' => 'tca', 'Thecc.05G036800' => 'tca', 'Thecc.10G080500' => 'tca', 'Thecc.10G080800' => 'tca', 'Thhalv10001560m.g' => 'esa', 'Thhalv10006120m.g' => 'esa', 'Thhalv10014375m.g' => 'esa', 'Thhalv10021264m.g' => 'esa', 'Thhalv10028856m.g' => 'esa', 'TPR.G1914' => 'tpr', 'TPR.G4757' => 'tpr', 'TPR.G5595' => 'tpr', 'TWI14G0952' => 'twi', 'TWI14G1307' => 'twi', 'TWI38G2143' => 'twi', 'TWI59G0826' => 'twi', 'TWI77G0527' => 'twi', 'TWI81G0150' => 'twi', 'unitig_21.g21018' => 'ugi', 'unitig_26.g9725' => 'ugi', 'unitig_744.g24653' => 'ugi', 'unitig_749.g13778' => 'ugi', 'unitig_899.g15035' => 'ugi', 'vmacro04296' => 'vma', 'vmacro04852' => 'vma', 'vmacro13404' => 'vma', 'vmacro20169' => 'vma', 'vmacro21014' => 'vma', 'VMungo0331G0237' => 'vmu', 'VMungo0331G0706' => 'vmu', 'VMungo0331G1361' => 'vmu', 'VMungo0331G1489' => 'vmu', 'VMungo0540G1037' => 'vmu', 'VMungo0720G2487' => 'vmu', 'VMungo0720G2721' => 'vmu', 'Zm00001eb086860' => 'zma', 'Zm00001eb104760' => 'zma', 'Zm00001eb148220' => 'zma', 'Zm00001eb259030' => 'zma', 'Zm00001eb289590' => 'zma', 'Zm00001eb420150' => 'zma' ) $gf_id = 'HOM05D000968' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000968' ) $data_identifier = 'HOM05D000968' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 19, 'bol' => (int) 9, 'bra' => (int) 12, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 5, 'ccan' => (int) 7, 'cde' => (int) 5, 'cfa' => (int) 8, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 4, 'dca' => (int) 5, 'din' => (int) 5, 'dzi' => (int) 12, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 25, 'fve' => (int) 5, 'gma' => (int) 9, 'ghi' => (int) 18, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 7, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 5, 'sun' => (int) 2, 'lal' => (int) 9, 'lja' => (int) 5, 'lonja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 9, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 2, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 3, 'stu' => (int) 6, 'pvu' => (int) 4, 'ptr' => (int) 8, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 3, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 1, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 5, 'sas' => (int) 5, 'shi' => (int) 6, 'smo' => (int) 6, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 3, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420150' $species_info = array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ) $local_species = 'spa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000968', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p31690' => 'bna', 'A03p36040' => 'bna', 'A03p53730' => 'bna', 'A04p01410' => 'bna', 'A05p05420' => 'bna', 'A05p39630' => 'bna', 'A05p39640' => 'bna', 'A09p00970' => 'bna', 'A09p53060' => 'bna', 'A10p31890' => 'bna', 'Aa31LG10G15040' => 'aar', 'Aa31LG1G21090' => 'aar', 'Aa31LG1G26900' => 'aar', 'Aa31LG3G1820' => 'aar', 'Aa31LG5G1100' => 'aar', 'Aa31LG6G4740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2265' => 'aag', 'Actinidia07998' => 'ach', 'Actinidia11266' => 'ach', 'Actinidia12682' => 'ach', 'Actinidia26479' => 'ach', 'Actinidia31406' => 'ach', 'Actinidia32437' => 'ach', 'Actinidia38862' => 'ach', 'Ah.05g174230' => 'amhyb', 'Ah.05g179070' => 'amhyb', 'Ah.05g179090' => 'amhyb', 'Ah.12g059950' => 'amhyb', 'AL3G20480' => 'aly', 'AL4G44520' => 'aly', 'AL5G43110' => 'aly', 'AL6G13890' => 'aly', 'AL6G52620' => 'aly', 'AL7G30830' => 'aly', 'Aqoxy1G00899' => 'aox', 'Aqoxy5G04333' => 'aox', 'Aqoxy7G00641' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3IZ0NN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4EF6AW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W9P8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79GA3M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C43NQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFCU6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G95YVJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCHK29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LU1UG8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX91RN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGB4B1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8DA0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9H7JI' => 'arhy', 'AT3G09320' => 'ath', 'AT3G60800' => 'ath', 'AT4G00840' => 'ath', 'AT4G22750' => 'ath', 'AT5G04270' => 'ath', 'ATR0090G003' => 'atr', 'ATR0559G349' => 'atr', 'ATR0680G261' => 'atr', 'ATR0810G048' => 'atr', 'Atru.chr12.831' => 'acertr', 'Atru.chr5.303' => 'acertr', 'Atru.chr5.748' => 'acertr', 'Atru.chr8.1999' => 'acertr', 'Atru.chr9.1436' => 'acertr', 'AUR62004211' => 'cqu', 'AUR62004548' => 'cqu', 'AUR62013637' => 'cqu', 'AUR62022662' => 'cqu', 'AUR62025777' => 'cqu', 'AUR62042386' => 'cqu', 'BcaB01g02310' => 'bca', 'BcaB01g06062' => 'bca', 'BcaB02g08975' => 'bca', 'BcaB02g08980' => 'bca', 'BcaC01g04228' => 'bca', 'BcaC01g06830' => 'bca', 'BcaC02g10186' => 'bca', 'BcaC02g12214' => 'bca', 'BcaC04g24101' => 'bca', 'BcaC05g29520' => 'bca', 'BcaC05g29661' => 'bca', 'BcaC06g32130' => 'bca', 'BcaC06g32131' => 'bca', 'BcaC07g40601' => 'bca', 'BcaC07g42641' => 'bca', 'BcaNung01038' => 'bca', 'BcaNung01676' => 'bca', 'BcaNung02480' => 'bca', 'BcaNung07376' => 'bca', 'BolC3t16146H' => 'bol', 'BolC3t16637H' => 'bol', 'BolC4t22257H' => 'bol', 'BolC4t24728H' => 'bol', 'BolC5t34517H' => 'bol', 'BolC7t45703H' => 'bol', 'BolC8t51166H' => 'bol', 'BolC9t53038H' => 'bol', 'BolC9t60000H' => 'bol', 'BraA01t01345Z' => 'bra', 'BraA01t01346Z' => 'bra', 'BraA01t01348Z' => 'bra', 'BraA03t12347Z' => 'bra', 'BraA03t12775Z' => 'bra', 'BraA03t14439Z' => 'bra', 'BraA04t15860Z' => 'bra', 'BraA05t19511Z' => 'bra', 'BraA05t22746Z' => 'bra', 'BraA09t35767Z' => 'bra', 'BraA09t40732Z' => 'bra', 'BraA10t45233Z' => 'bra', 'C03p38720' => 'bna', 'C03p43680' => 'bna', 'C04p06350' => 'bna', 'C04p31800' => 'bna', 'C05p58680' => 'bna', 'C07p52110' => 'bna', 'C08p35760' => 'bna', 'C09p01050' => 'bna', 'C09p72600' => 'bna', 'CAN.G106.2' => 'can', 'CAN.G1482.1' => 'can', 'CAN.G324.12' => 'can', 'CAN.G388.20' => 'can', 'CAN.G412.7' => 'can', 'CAN.G694.32' => 'can', 'CAN.G92.12' => 'can', 'CANSAT11G2353' => 'cansat', 'CANSAT21G1398' => 'cansat', 'CANSAT56G2456' => 'cansat', 'CANSAT56G3031' => 'cansat', 'CANSAT56G4539' => 'cansat', 'CARHR083680' => 'chi', 'CARHR171190' => 'chi', 'CARHR209010' => 'chi', 'CARHR229680' => 'chi', 'CARHR249490' => 'chi', 'Carub.0003s0844' => 'cru', 'Carub.0005s2755' => 'cru', 'Carub.0006s0322' => 'cru', 'Carub.0006s3586' => 'cru', 'Carub.0007s1855' => 'cru', 'Ca_07808_v3' => 'car', 'Ca_09535_v3' => 'car', 'Ca_10548_v3' => 'car', 'Ca_19913_v3' => 'car', 'Ca_19916_v3' => 'car', 'Ca_19975_v3' => 'car', 'CBR_g22876' => 'cbr', 'CBR_g22879' => 'cbr', 'CBR_g38491' => 'cbr', 'CBR_g54185' => 'cbr', 'CBR_g54190' => 'cbr', 'Cc02_g11020' => 'ccan', 'Cc02_g23920' => 'ccan', 'Cc02_g39860' => 'ccan', 'Cc02_g39870' => 'ccan', 'Cc03_g06760' => 'ccan', 'Cc06_g02450' => 'ccan', 'Cc09_g09450' => 'ccan', 'CDE02G1959' => 'cde', 'CDE04G0600' => 'cde', 'CDE07G1996' => 'cde', 'CDE07G2078' => 'cde', 'CDE11G0611' => 'cde', 'Cfa001683' => 'cfa', 'Cfa001734' => 'cfa', 'Cfa001737' => 'cfa', 'Cfa003751' => 'cfa', 'Cfa012019' => 'cfa', 'Cfa017353' => 'cfa', 'Cfa017732' => 'cfa', 'Cfa022464' => 'cfa', 'Ciclev10012400m.g' => 'ccl', 'Ciclev10021242m.g' => 'ccl', 'Ciclev10021302m.g' => 'ccl', 'Ciclev10021463m.g' => 'ccl', 'Ciclev10032359m.g' => 'ccl', 'CiPaw.01G081000' => 'cil', 'CiPaw.01G262500' => 'cil', 'CiPaw.01G269800' => 'cil', 'CiPaw.02G168400' => 'cil', 'CiPaw.05G119500' => 'cil', 'CiPaw.11G147300' => 'cil', 'ClCG01G003630' => 'cla', 'ClCG05G000510' => 'cla', 'ClCG05G002300' => 'cla', 'ClCG08G007650' => 'cla', 'ClCG10G021250' => 'cla', 'COL.COLO4_06218' => 'col', 'COL.COLO4_12538' => 'col', 'COL.COLO4_14775' => 'col', 'COL.COLO4_23875' => 'col', 'Cpa.g.sc141.16' => 'cpa', 'Cpa.g.sc169.16' => 'cpa', 'Cpa.g.sc244.4' => 'cpa', 'Cpa.g.sc244.5' => 'cpa', 'Cpa.g.sc29.87' => 'cpa', 'Cpa.g.sc53.115' => 'cpa', 'Cre03.g207502' => 'cre', 'Cre06.g277000' => 'cre', 'Cre09.g394050' => 'cre', 'CsaV3_3G007680' => 'csa', 'CsaV3_3G009710' => 'csa', 'CsaV3_3G034790' => 'csa', 'CsaV3_5G003750' => 'csa', 'CsaV3_6G036620' => 'csa', 'CSS0002288' => 'camsi', 'CSS0011250' => 'camsi', 'CSS0021619' => 'camsi', 'CSS0046701' => 'camsi', 'DCAR_006420' => 'dca', 'DCAR_006865' => 'dca', 'DCAR_008558' => 'dca', 'DCAR_028754' => 'dca', 'DCAR_028755' => 'dca', 'Dinv31218' => 'din', 'Dinv32371' => 'din', 'Dinv34250' => 'din', 'Dinv37156' => 'din', 'Dinv43704' => 'din', 'Duzib093G1811' => 'dzi', 'Duzib106G1622' => 'dzi', 'Duzib114G0504' => 'dzi', 'Duzib128G0338' => 'dzi', 'Duzib128G1577' => 'dzi', 'Duzib133G0104' => 'dzi', 'Duzib133G1080' => 'dzi', 'Duzib138G0324' => 'dzi', 'Duzib138G0394' => 'dzi', 'Duzib205G0122' => 'dzi', 'Duzib268G1020' => 'dzi', 'Duzib268G1359' => 'dzi', 'ECA232G3929' => 'eca', 'ECA236G2210' => 'eca', 'ECA236G2287' => 'eca', 'ECA240G4568' => 'eca', 'ECA247G0894' => 'eca', 'EL10Ac1g00200' => 'bvu', 'EL10Ac1g00886' => 'bvu', 'EL10As1g23091' => 'bvu', 'EL10As1g23092' => 'bvu', 'Eucgr.A01284' => 'egr', 'Eucgr.A01285' => 'egr', 'Eucgr.D02456' => 'egr', 'Eucgr.E00018' => 'egr', 'Eucgr.E01439' => 'egr', 'Eucgr.G02859' => 'egr', 'FAN01G0168' => 'fan', 'FAN01G0453' => 'fan', 'FAN01G2761' => 'fan', 'FAN02G1239' => 'fan', 'FAN03G0645' => 'fan', 'FAN03G2707' => 'fan', 'FAN03G2978' => 'fan', 'FAN04G0227' => 'fan', 'FAN06G0091' => 'fan', 'FAN06G1418' => 'fan', 'FAN06G1512' => 'fan', 'FAN06G1986' => 'fan', 'FAN06G2905' => 'fan', 'FAN06G4325' => 'fan', 'FAN08G0033' => 'fan', 'FAN09G0642' => 'fan', 'FAN10G1763' => 'fan', 'FAN10G2026' => 'fan', 'FAN10G2513' => 'fan', 'FAN10G3402' => 'fan', 'FAN10G3564' => 'fan', 'FAN10G3987' => 'fan', 'FAN13G1490' => 'fan', 'FAN14G5857' => 'fan', 'FAN18G1188' => 'fan', 'FvH4_5g00750' => 'fve', 'FvH4_6g13410' => 'fve', 'FvH4_7g11740' => 'fve', 'FvH4_7g17410' => 'fve', 'FvH4_7g18860' => 'fve', 'Glyma.01G099100' => 'gma', 'Glyma.01G142300' => 'gma', 'Glyma.03G025500' => 'gma', 'Glyma.03G069700' => 'gma', 'Glyma.03G260000' => 'gma', 'Glyma.09G269800' => 'gma', 'Glyma.10G208700' => 'gma', 'Glyma.18G220400' => 'gma', 'Glyma.20G182000' => 'gma', 'Gohir.A01G221726' => 'ghi', 'Gohir.A07G134600' => 'ghi', 'Gohir.A07G146000' => 'ghi', 'Gohir.A08G173900' => 'ghi', 'Gohir.A09G194900' => 'ghi', 'Gohir.A10G204100' => 'ghi', 'Gohir.A11G080600' => 'ghi', 'Gohir.A11G327500' => 'ghi', 'Gohir.A12G101800' => 'ghi', 'Gohir.D01G211200' => 'ghi', 'Gohir.D07G139200' => 'ghi', 'Gohir.D07G152100' => 'ghi', 'Gohir.D08G192600' => 'ghi', 'Gohir.D09G189200' => 'ghi', 'Gohir.D10G212000' => 'ghi', 'Gohir.D11G085200' => 'ghi', 'Gohir.D11G346400' => 'ghi', 'Gohir.D12G104800' => 'ghi', 'Gorai.001G151300' => 'gra', 'Gorai.001G174100' => 'gra', 'Gorai.002G257000' => 'gra', 'Gorai.004G202600' => 'gra', 'Gorai.007G090900' => 'gra', 'Gorai.007G376700' => 'gra', 'Gorai.008G114100' => 'gra', 'Gorai.011G237900' => 'gra', 'GSVIVG01005450001' => 'vvi', 'GSVIVG01016232001' => 'vvi', 'GSVIVG01026157001' => 'vvi', 'GSVIVG01027419001' => 'vvi', 'GSVIVG01027631001' => 'vvi', 'GSVIVG01034143001' => 'vvi', 'HanXRQChr03g0093921' => 'han', 'HanXRQChr04g0120001' => 'han', 'HanXRQChr04g0122561' => 'han', 'HanXRQChr09g0246851' => 'han', 'HanXRQChr10g0293311' => 'han', 'HanXRQChr13g0425231' => 'han', 'HanXRQChr16g0532571' => 'han', 'Haze_09050' => 'cav', 'Haze_15715' => 'cav', 'Haze_15716' => 'cav', 'Haze_16803' => 'cav', 'Haze_16850' => 'cav', 'Hma1.2p1_0301F.1_g118655' => 'hma', 'Hma1.2p1_0309F.1_g120590' => 'hma', 'Hma1.2p1_0936F.1_g238900' => 'hma', 'Hma1.2p1_3552F.1_g336740' => 'hma', 'HPP92_003520' => 'vpl', 'HPP92_006628' => 'vpl', 'HPP92_006645' => 'vpl', 'HPP92_014669' => 'vpl', 'HPP92_015077' => 'vpl', 'Hund16742' => 'sun', 'Hund17022' => 'sun', 'Lalb_Chr02g0152131' => 'lal', 'Lalb_Chr05g0225371' => 'lal', 'Lalb_Chr07g0189841' => 'lal', 'Lalb_Chr07g0192961' => 'lal', 'Lalb_Chr12g0208221' => 'lal', 'Lalb_Chr13g0291211' => 'lal', 'Lalb_Chr13g0291781' => 'lal', 'Lalb_Chr18g0044651' => 'lal', 'Lalb_Chr21g0313731' => 'lal', 'Lj1g0022533' => 'lja', 'Lj2A18T50' => 'lonja', 'Lj2A92G93' => 'lonja', 'Lj3A965T73' => 'lonja', 'Lj3g0000673' => 'lja', 'Lj3g0002666' => 'lja', 'Lj4g0016985' => 'lja', 'Lj5g0003625' => 'lja', 'Lj7A529G36' => 'lonja', 'Lj9A569T49' => 'lonja', 'Lj9A604T63' => 'lonja', 'Lsat_1_v5_gn_3_132060' => 'lsa', 'Lsat_1_v5_gn_4_68941' => 'lsa', 'Lsat_1_v5_gn_5_95580' => 'lsa', 'Lsat_1_v5_gn_7_161' => 'lsa', 'Lsat_1_v5_gn_7_7041' => 'lsa', 'Lsat_1_v5_gn_9_33481' => 'lsa', 'Lsat_1_v5_gn_9_68260' => 'lsa', 'Manes.01G073100' => 'mes', 'Manes.01G266300' => 'mes', 'Manes.02G033300' => 'mes', 'Manes.05G017900' => 'mes', 'Manes.05G046100' => 'mes', 'Manes.08G080900' => 'mes', 'Manes.10G049400' => 'mes', 'Mapoly0009s0186' => 'mpo', 'Mapoly0036s0118' => 'mpo', 'Mapoly0101s0046' => 'mpo', 'MBI04_g30218_MAGBIO' => 'mbi', 'MBI04_g35564_MAGBIO' => 'mbi', 'MBI12_g34011_MAGBIO' => 'mbi', 'MBI14_g04655_MAGBIO' => 'mbi', 'MCO07G653' => 'mco', 'MCO10G173' => 'mco', 'MD01G1087100' => 'mdo', 'MD01G1104200' => 'mdo', 'MD02G1205100' => 'mdo', 'MD04G1079200' => 'mdo', 'MD04G1131400' => 'mdo', 'MD07G1121600' => 'mdo', 'MD07G1157300' => 'mdo', 'MD07G1171000' => 'mdo', 'MD12G1144500' => 'mdo', 'Medtr1g094610' => 'mtr', 'Medtr4g021795' => 'mtr', 'Medtr4g023760' => 'mtr', 'Medtr7g118050' => 'mtr', 'MELO3C005582.2' => 'cme', 'MELO3C005989.2' => 'cme', 'MELO3C006192.2' => 'cme', 'MELO3C009248.2' => 'cme', 'MELO3C019817.2' => 'cme', 'Migut.B01625' => 'egut', 'Migut.B01915' => 'egut', 'Migut.F01721' => 'egut', 'Migut.J00314' => 'egut', 'MSTRG.20742' => 'ama', 'MSTRG.8134' => 'ama', 'Nitab4.5_0000096g0010' => 'nta', 'Nitab4.5_0000202g0030' => 'nta', 'Nitab4.5_0000216g0370' => 'nta', 'Nitab4.5_0000457g0230' => 'nta', 'Nitab4.5_0001702g0170' => 'nta', 'Nitab4.5_0003607g0010' => 'nta', 'Nitab4.5_0004917g0020' => 'nta', 'Nitab4.5_0007059g0010' => 'nta', 'Nitab4.5_0007184g0010' => 'nta', 'Nitab4.5_0007346g0020' => 'nta', 'Nn1g00410' => 'nnu', 'Nn1g01252' => 'nnu', 'Nn2g11168' => 'nnu', 'Nn2g13403' => 'nnu', 'Nn2g13760' => 'nnu', 'Nn4g26380' => 'nnu', 'Oeu000806.2' => 'oeu', 'Oeu005788.1' => 'oeu', 'Oeu006900.3' => 'oeu', 'Oeu007797.1' => 'oeu', 'Oeu011932.1' => 'oeu', 'Oeu022739.1' => 'oeu', 'Oeu037918.1' => 'oeu', 'Oeu055490.2' => 'oeu', 'Os01g0844400' => 'osa', 'Os02g0819100' => 'osa', 'Os03g0804300' => 'osa', 'Os05g0458000' => 'osa', 'Os07g0467800' => 'osa', 'Os12g0602200' => 'osa', 'Peaxi162Scf00013g03444' => 'pax', 'Peaxi162Scf00094g01120' => 'pax', 'Peaxi162Scf00191g01211' => 'pax', 'Peaxi162Scf00238g01110' => 'pax', 'Peaxi162Scf00330g00719' => 'pax', 'Peaxi162Scf00627g00018' => 'pax', 'PGR031G2686' => 'pgr', 'PGR042G0809' => 'pgr', 'PGR142G0193' => 'pgr', 'PGSC0003DMG400011066' => 'stu', 'PGSC0003DMG400012041' => 'stu', 'PGSC0003DMG400013678' => 'stu', 'PGSC0003DMG400023477' => 'stu', 'PGSC0003DMG400025956' => 'stu', 'PGSC0003DMG401019151' => 'stu', 'Phvul.006G116400' => 'pvu', 'Phvul.007G097300' => 'pvu', 'Phvul.010G015000' => 'pvu', 'Phvul.010G083900' => 'pvu', 'Potri.001G117100' => 'ptr', 'Potri.002G147300' => 'ptr', 'Potri.003G115600' => 'ptr', 'Potri.006G087400' => 'ptr', 'Potri.010G226100' => 'ptr', 'Potri.014G069200' => 'ptr', 'Potri.014G104000' => 'ptr', 'Potri.016G100200' => 'ptr', 'Pp3c10_20450' => 'ppa', 'Pp3c1_42400' => 'ppa', 'Pp3c3_24390' => 'ppa', 'Pp3c3_2860' => 'ppa', 'PRCOL_00003193' => 'pco', 'Prupe.2G144500' => 'ppe', 'Prupe.2G195700' => 'ppe', 'Prupe.2G209800' => 'ppe', 'Prupe.5G080000' => 'ppe', 'Prupe.6G257900' => 'ppe', 'Psat3g001160' => 'psa', 'Psat6g181880' => 'psa', 'Psat7g233720' => 'psa', 'PSO063G7587' => 'pso', 'PSO339G2145' => 'pso', 'PSO339G3369' => 'pso', 'PSO478G2747' => 'pso', 'PSO513G0140' => 'pso', 'PSO782G1614' => 'pso', 'PSO782G4889' => 'pso', 'PSO782G5485' => 'pso', 'PSO801G0241' => 'pso', 'QL07p048854' => 'qlo', 'QL08p046745' => 'qlo', 'QL08p052606' => 'qlo', 'QL08p053414' => 'qlo', 'QL08p054868' => 'qlo', 'RcHm_v2.0_Chr1g0350251' => 'rch', 'RcHm_v2.0_Chr1g0360851' => 'rch', 'RcHm_v2.0_Chr1g0362791' => 'rch', 'RcHm_v2.0_Chr3g0466281' => 'rch', 'RcHm_v2.0_Chr7g0201481' => 'rch', 'Rhsim01G0148600' => 'rsi', 'Rhsim05G0194400' => 'rsi', 'Rhsim07G0000700' => 'rsi', 'Rhsim07G0000800' => 'rsi', 'Rhsim07G0027900' => 'rsi', 'Rhsim09G0149500' => 'rsi', 'RhsimUnG0186900' => 'rsi', 'Sabra01G0089900' => 'sbr', 'Sabra02G0114700' => 'sbr', 'Sabra02G0116300' => 'sbr', 'Sabra03G0080100' => 'sbr', 'Sabra08G0024300' => 'sbr', 'Sabra10G0174300' => 'sbr', 'Sabra14G0048900' => 'sbr', 'Sabra14G0076500' => 'sbr', 'SalBow5G2513' => 'sbo', 'Sc01g0002300' => 'sci', 'Sc01g0004450' => 'sci', 'Sc06g0001680' => 'sci', 'Sc23g0003580' => 'sci', 'Sed0000913' => 'sed', 'Sed0001655' => 'sed', 'Sed0007745' => 'sed', 'Sed0010951' => 'sed', 'Sed0017599' => 'sed', 'Sed0021405' => 'sed', 'Sed0022810' => 'sed', 'SEGI_07099' => 'sgi', 'SEGI_11931' => 'sgi', 'SEGI_13187' => 'sgi', 'SEGI_29958' => 'sgi', 'SEGI_36351' => 'sgi', 'SGA_v2.0_scaffold126G33770' => 'sas', 'SGA_v2.0_scaffold153G37003' => 'sas', 'SGA_v2.0_scaffold2G01359' => 'sas', 'SGA_v2.0_scaffold5G03064' => 'sas', 'SGA_v2.0_scaffold95G28903' => 'sas', 'SHI12701' => 'shi', 'SHI26410' => 'shi', 'SHI38997' => 'shi', 'SHI53759' => 'shi', 'SHI53886' => 'shi', 'SHI54714' => 'shi', 'SMO011G0041' => 'smo', 'SMO146G0251' => 'smo', 'SMO160G0004' => 'smo', 'SMO174G0057' => 'smo', 'SMO244G0089' => 'smo', 'SMO296G0011' => 'smo', 'Solyc01g091280.3' => 'sly', 'Solyc05g047610.3' => 'sly', 'Solyc05g047640.3' => 'sly', 'Solyc05g055630.3' => 'sly', 'Solyc10g018160.2' => 'sly', 'Solyc10g084820.2' => 'sly', 'Solyc10g086565.2' => 'sly', 'Sopen01g037030' => 'spe', 'Sopen05g027920' => 'spe', 'Sopen05g034070' => 'spe', 'Sopen10g007260' => 'spe', 'Sopen10g034260' => 'spe', 'Sopen10g035950' => 'spe', 'Sp3g07710' => 'spa', 'Sp4g27420' => 'spa', 'Sp5g02450' => 'spa', 'Sp6g01280' => 'spa', 'Sp6g38480' => 'spa', 'Sp7g20780' => 'spa', 'TAR374G1413' => 'tar', 'TAR623G1777' => 'tar', 'TAR629G2370' => 'tar', 'TAR633G1759' => 'tar', 'TAR636G3387' => 'tar', 'THA.LOC104802447' => 'tha', 'THA.LOC104813916' => 'tha', 'THA.LOC104816423' => 'tha', 'THA.LOC104817246' => 'tha', 'THA.LOC104825895' => 'tha', 'Thecc.01G335200' => 'tca', 'Thecc.01G377400' => 'tca', 'Thecc.03G262200' => 'tca', 'Thecc.05G036800' => 'tca', 'Thecc.10G080500' => 'tca', 'Thecc.10G080800' => 'tca', 'Thhalv10001560m.g' => 'esa', 'Thhalv10006120m.g' => 'esa', 'Thhalv10014375m.g' => 'esa', 'Thhalv10021264m.g' => 'esa', 'Thhalv10028856m.g' => 'esa', 'TPR.G1914' => 'tpr', 'TPR.G4757' => 'tpr', 'TPR.G5595' => 'tpr', 'TWI14G0952' => 'twi', 'TWI14G1307' => 'twi', 'TWI38G2143' => 'twi', 'TWI59G0826' => 'twi', 'TWI77G0527' => 'twi', 'TWI81G0150' => 'twi', 'unitig_21.g21018' => 'ugi', 'unitig_26.g9725' => 'ugi', 'unitig_744.g24653' => 'ugi', 'unitig_749.g13778' => 'ugi', 'unitig_899.g15035' => 'ugi', 'vmacro04296' => 'vma', 'vmacro04852' => 'vma', 'vmacro13404' => 'vma', 'vmacro20169' => 'vma', 'vmacro21014' => 'vma', 'VMungo0331G0237' => 'vmu', 'VMungo0331G0706' => 'vmu', 'VMungo0331G1361' => 'vmu', 'VMungo0331G1489' => 'vmu', 'VMungo0540G1037' => 'vmu', 'VMungo0720G2487' => 'vmu', 'VMungo0720G2721' => 'vmu', 'Zm00001eb086860' => 'zma', 'Zm00001eb104760' => 'zma', 'Zm00001eb148220' => 'zma', 'Zm00001eb259030' => 'zma', 'Zm00001eb289590' => 'zma', 'Zm00001eb420150' => 'zma' ), 'gf_id' => 'HOM05D000968', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000968' ), 'data_identifier' => 'HOM05D000968', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000968', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p31690' => 'bna', 'A03p36040' => 'bna', 'A03p53730' => 'bna', 'A04p01410' => 'bna', 'A05p05420' => 'bna', 'A05p39630' => 'bna', 'A05p39640' => 'bna', 'A09p00970' => 'bna', 'A09p53060' => 'bna', 'A10p31890' => 'bna', 'Aa31LG10G15040' => 'aar', 'Aa31LG1G21090' => 'aar', 'Aa31LG1G26900' => 'aar', 'Aa31LG3G1820' => 'aar', 'Aa31LG5G1100' => 'aar', 'Aa31LG6G4740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2265' => 'aag', 'Actinidia07998' => 'ach', 'Actinidia11266' => 'ach', 'Actinidia12682' => 'ach', 'Actinidia26479' => 'ach', 'Actinidia31406' => 'ach', 'Actinidia32437' => 'ach', 'Actinidia38862' => 'ach', 'Ah.05g174230' => 'amhyb', 'Ah.05g179070' => 'amhyb', 'Ah.05g179090' => 'amhyb', 'Ah.12g059950' => 'amhyb', 'AL3G20480' => 'aly', 'AL4G44520' => 'aly', 'AL5G43110' => 'aly', 'AL6G13890' => 'aly', 'AL6G52620' => 'aly', 'AL7G30830' => 'aly', 'Aqoxy1G00899' => 'aox', 'Aqoxy5G04333' => 'aox', 'Aqoxy7G00641' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3IZ0NN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4EF6AW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W9P8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79GA3M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C43NQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFCU6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G95YVJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCHK29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LU1UG8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX91RN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGB4B1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8DA0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9H7JI' => 'arhy', 'AT3G09320' => 'ath', 'AT3G60800' => 'ath', 'AT4G00840' => 'ath', 'AT4G22750' => 'ath', 'AT5G04270' => 'ath', 'ATR0090G003' => 'atr', 'ATR0559G349' => 'atr', 'ATR0680G261' => 'atr', 'ATR0810G048' => 'atr', 'Atru.chr12.831' => 'acertr', 'Atru.chr5.303' => 'acertr', 'Atru.chr5.748' => 'acertr', 'Atru.chr8.1999' => 'acertr', 'Atru.chr9.1436' => 'acertr', 'AUR62004211' => 'cqu', 'AUR62004548' => 'cqu', 'AUR62013637' => 'cqu', 'AUR62022662' => 'cqu', 'AUR62025777' => 'cqu', 'AUR62042386' => 'cqu', 'BcaB01g02310' => 'bca', 'BcaB01g06062' => 'bca', 'BcaB02g08975' => 'bca', 'BcaB02g08980' => 'bca', 'BcaC01g04228' => 'bca', 'BcaC01g06830' => 'bca', 'BcaC02g10186' => 'bca', 'BcaC02g12214' => 'bca', 'BcaC04g24101' => 'bca', 'BcaC05g29520' => 'bca', 'BcaC05g29661' => 'bca', 'BcaC06g32130' => 'bca', 'BcaC06g32131' => 'bca', 'BcaC07g40601' => 'bca', 'BcaC07g42641' => 'bca', 'BcaNung01038' => 'bca', 'BcaNung01676' => 'bca', 'BcaNung02480' => 'bca', 'BcaNung07376' => 'bca', 'BolC3t16146H' => 'bol', 'BolC3t16637H' => 'bol', 'BolC4t22257H' => 'bol', 'BolC4t24728H' => 'bol', 'BolC5t34517H' => 'bol', 'BolC7t45703H' => 'bol', 'BolC8t51166H' => 'bol', 'BolC9t53038H' => 'bol', 'BolC9t60000H' => 'bol', 'BraA01t01345Z' => 'bra', 'BraA01t01346Z' => 'bra', 'BraA01t01348Z' => 'bra', 'BraA03t12347Z' => 'bra', 'BraA03t12775Z' => 'bra', 'BraA03t14439Z' => 'bra', 'BraA04t15860Z' => 'bra', 'BraA05t19511Z' => 'bra', 'BraA05t22746Z' => 'bra', 'BraA09t35767Z' => 'bra', 'BraA09t40732Z' => 'bra', 'BraA10t45233Z' => 'bra', 'C03p38720' => 'bna', 'C03p43680' => 'bna', 'C04p06350' => 'bna', 'C04p31800' => 'bna', 'C05p58680' => 'bna', 'C07p52110' => 'bna', 'C08p35760' => 'bna', 'C09p01050' => 'bna', 'C09p72600' => 'bna', 'CAN.G106.2' => 'can', 'CAN.G1482.1' => 'can', 'CAN.G324.12' => 'can', 'CAN.G388.20' => 'can', 'CAN.G412.7' => 'can', 'CAN.G694.32' => 'can', 'CAN.G92.12' => 'can', 'CANSAT11G2353' => 'cansat', 'CANSAT21G1398' => 'cansat', 'CANSAT56G2456' => 'cansat', 'CANSAT56G3031' => 'cansat', 'CANSAT56G4539' => 'cansat', 'CARHR083680' => 'chi', 'CARHR171190' => 'chi', 'CARHR209010' => 'chi', 'CARHR229680' => 'chi', 'CARHR249490' => 'chi', 'Carub.0003s0844' => 'cru', 'Carub.0005s2755' => 'cru', 'Carub.0006s0322' => 'cru', 'Carub.0006s3586' => 'cru', 'Carub.0007s1855' => 'cru', 'Ca_07808_v3' => 'car', 'Ca_09535_v3' => 'car', 'Ca_10548_v3' => 'car', 'Ca_19913_v3' => 'car', 'Ca_19916_v3' => 'car', 'Ca_19975_v3' => 'car', 'CBR_g22876' => 'cbr', 'CBR_g22879' => 'cbr', 'CBR_g38491' => 'cbr', 'CBR_g54185' => 'cbr', 'CBR_g54190' => 'cbr', 'Cc02_g11020' => 'ccan', 'Cc02_g23920' => 'ccan', 'Cc02_g39860' => 'ccan', 'Cc02_g39870' => 'ccan', 'Cc03_g06760' => 'ccan', 'Cc06_g02450' => 'ccan', 'Cc09_g09450' => 'ccan', 'CDE02G1959' => 'cde', 'CDE04G0600' => 'cde', 'CDE07G1996' => 'cde', 'CDE07G2078' => 'cde', 'CDE11G0611' => 'cde', 'Cfa001683' => 'cfa', 'Cfa001734' => 'cfa', 'Cfa001737' => 'cfa', 'Cfa003751' => 'cfa', 'Cfa012019' => 'cfa', 'Cfa017353' => 'cfa', 'Cfa017732' => 'cfa', 'Cfa022464' => 'cfa', 'Ciclev10012400m.g' => 'ccl', 'Ciclev10021242m.g' => 'ccl', 'Ciclev10021302m.g' => 'ccl', 'Ciclev10021463m.g' => 'ccl', 'Ciclev10032359m.g' => 'ccl', 'CiPaw.01G081000' => 'cil', 'CiPaw.01G262500' => 'cil', 'CiPaw.01G269800' => 'cil', 'CiPaw.02G168400' => 'cil', 'CiPaw.05G119500' => 'cil', 'CiPaw.11G147300' => 'cil', 'ClCG01G003630' => 'cla', 'ClCG05G000510' => 'cla', 'ClCG05G002300' => 'cla', 'ClCG08G007650' => 'cla', 'ClCG10G021250' => 'cla', 'COL.COLO4_06218' => 'col', 'COL.COLO4_12538' => 'col', 'COL.COLO4_14775' => 'col', 'COL.COLO4_23875' => 'col', 'Cpa.g.sc141.16' => 'cpa', 'Cpa.g.sc169.16' => 'cpa', 'Cpa.g.sc244.4' => 'cpa', 'Cpa.g.sc244.5' => 'cpa', 'Cpa.g.sc29.87' => 'cpa', 'Cpa.g.sc53.115' => 'cpa', 'Cre03.g207502' => 'cre', 'Cre06.g277000' => 'cre', 'Cre09.g394050' => 'cre', 'CsaV3_3G007680' => 'csa', 'CsaV3_3G009710' => 'csa', 'CsaV3_3G034790' => 'csa', 'CsaV3_5G003750' => 'csa', 'CsaV3_6G036620' => 'csa', 'CSS0002288' => 'camsi', 'CSS0011250' => 'camsi', 'CSS0021619' => 'camsi', 'CSS0046701' => 'camsi', 'DCAR_006420' => 'dca', 'DCAR_006865' => 'dca', 'DCAR_008558' => 'dca', 'DCAR_028754' => 'dca', 'DCAR_028755' => 'dca', 'Dinv31218' => 'din', 'Dinv32371' => 'din', 'Dinv34250' => 'din', 'Dinv37156' => 'din', 'Dinv43704' => 'din', 'Duzib093G1811' => 'dzi', 'Duzib106G1622' => 'dzi', 'Duzib114G0504' => 'dzi', 'Duzib128G0338' => 'dzi', 'Duzib128G1577' => 'dzi', 'Duzib133G0104' => 'dzi', 'Duzib133G1080' => 'dzi', 'Duzib138G0324' => 'dzi', 'Duzib138G0394' => 'dzi', 'Duzib205G0122' => 'dzi', 'Duzib268G1020' => 'dzi', 'Duzib268G1359' => 'dzi', 'ECA232G3929' => 'eca', 'ECA236G2210' => 'eca', 'ECA236G2287' => 'eca', 'ECA240G4568' => 'eca', 'ECA247G0894' => 'eca', 'EL10Ac1g00200' => 'bvu', 'EL10Ac1g00886' => 'bvu', 'EL10As1g23091' => 'bvu', 'EL10As1g23092' => 'bvu', 'Eucgr.A01284' => 'egr', 'Eucgr.A01285' => 'egr', 'Eucgr.D02456' => 'egr', 'Eucgr.E00018' => 'egr', 'Eucgr.E01439' => 'egr', 'Eucgr.G02859' => 'egr', 'FAN01G0168' => 'fan', 'FAN01G0453' => 'fan', 'FAN01G2761' => 'fan', 'FAN02G1239' => 'fan', 'FAN03G0645' => 'fan', 'FAN03G2707' => 'fan', 'FAN03G2978' => 'fan', 'FAN04G0227' => 'fan', 'FAN06G0091' => 'fan', 'FAN06G1418' => 'fan', 'FAN06G1512' => 'fan', 'FAN06G1986' => 'fan', 'FAN06G2905' => 'fan', 'FAN06G4325' => 'fan', 'FAN08G0033' => 'fan', 'FAN09G0642' => 'fan', 'FAN10G1763' => 'fan', 'FAN10G2026' => 'fan', 'FAN10G2513' => 'fan', 'FAN10G3402' => 'fan', 'FAN10G3564' => 'fan', 'FAN10G3987' => 'fan', 'FAN13G1490' => 'fan', 'FAN14G5857' => 'fan', 'FAN18G1188' => 'fan', 'FvH4_5g00750' => 'fve', 'FvH4_6g13410' => 'fve', 'FvH4_7g11740' => 'fve', 'FvH4_7g17410' => 'fve', 'FvH4_7g18860' => 'fve', 'Glyma.01G099100' => 'gma', 'Glyma.01G142300' => 'gma', 'Glyma.03G025500' => 'gma', 'Glyma.03G069700' => 'gma', 'Glyma.03G260000' => 'gma', 'Glyma.09G269800' => 'gma', 'Glyma.10G208700' => 'gma', 'Glyma.18G220400' => 'gma', 'Glyma.20G182000' => 'gma', 'Gohir.A01G221726' => 'ghi', 'Gohir.A07G134600' => 'ghi', 'Gohir.A07G146000' => 'ghi', 'Gohir.A08G173900' => 'ghi', 'Gohir.A09G194900' => 'ghi', 'Gohir.A10G204100' => 'ghi', 'Gohir.A11G080600' => 'ghi', 'Gohir.A11G327500' => 'ghi', 'Gohir.A12G101800' => 'ghi', 'Gohir.D01G211200' => 'ghi', 'Gohir.D07G139200' => 'ghi', 'Gohir.D07G152100' => 'ghi', 'Gohir.D08G192600' => 'ghi', 'Gohir.D09G189200' => 'ghi', 'Gohir.D10G212000' => 'ghi', 'Gohir.D11G085200' => 'ghi', 'Gohir.D11G346400' => 'ghi', 'Gohir.D12G104800' => 'ghi', 'Gorai.001G151300' => 'gra', 'Gorai.001G174100' => 'gra', 'Gorai.002G257000' => 'gra', 'Gorai.004G202600' => 'gra', 'Gorai.007G090900' => 'gra', 'Gorai.007G376700' => 'gra', 'Gorai.008G114100' => 'gra', 'Gorai.011G237900' => 'gra', 'GSVIVG01005450001' => 'vvi', 'GSVIVG01016232001' => 'vvi', 'GSVIVG01026157001' => 'vvi', 'GSVIVG01027419001' => 'vvi', 'GSVIVG01027631001' => 'vvi', 'GSVIVG01034143001' => 'vvi', 'HanXRQChr03g0093921' => 'han', 'HanXRQChr04g0120001' => 'han', 'HanXRQChr04g0122561' => 'han', 'HanXRQChr09g0246851' => 'han', 'HanXRQChr10g0293311' => 'han', 'HanXRQChr13g0425231' => 'han', 'HanXRQChr16g0532571' => 'han', 'Haze_09050' => 'cav', 'Haze_15715' => 'cav', 'Haze_15716' => 'cav', 'Haze_16803' => 'cav', 'Haze_16850' => 'cav', 'Hma1.2p1_0301F.1_g118655' => 'hma', 'Hma1.2p1_0309F.1_g120590' => 'hma', 'Hma1.2p1_0936F.1_g238900' => 'hma', 'Hma1.2p1_3552F.1_g336740' => 'hma', 'HPP92_003520' => 'vpl', 'HPP92_006628' => 'vpl', 'HPP92_006645' => 'vpl', 'HPP92_014669' => 'vpl', 'HPP92_015077' => 'vpl', 'Hund16742' => 'sun', 'Hund17022' => 'sun', 'Lalb_Chr02g0152131' => 'lal', 'Lalb_Chr05g0225371' => 'lal', 'Lalb_Chr07g0189841' => 'lal', 'Lalb_Chr07g0192961' => 'lal', 'Lalb_Chr12g0208221' => 'lal', 'Lalb_Chr13g0291211' => 'lal', 'Lalb_Chr13g0291781' => 'lal', 'Lalb_Chr18g0044651' => 'lal', 'Lalb_Chr21g0313731' => 'lal', 'Lj1g0022533' => 'lja', 'Lj2A18T50' => 'lonja', 'Lj2A92G93' => 'lonja', 'Lj3A965T73' => 'lonja', 'Lj3g0000673' => 'lja', 'Lj3g0002666' => 'lja', 'Lj4g0016985' => 'lja', 'Lj5g0003625' => 'lja', 'Lj7A529G36' => 'lonja', 'Lj9A569T49' => 'lonja', 'Lj9A604T63' => 'lonja', 'Lsat_1_v5_gn_3_132060' => 'lsa', 'Lsat_1_v5_gn_4_68941' => 'lsa', 'Lsat_1_v5_gn_5_95580' => 'lsa', 'Lsat_1_v5_gn_7_161' => 'lsa', 'Lsat_1_v5_gn_7_7041' => 'lsa', 'Lsat_1_v5_gn_9_33481' => 'lsa', 'Lsat_1_v5_gn_9_68260' => 'lsa', 'Manes.01G073100' => 'mes', 'Manes.01G266300' => 'mes', 'Manes.02G033300' => 'mes', 'Manes.05G017900' => 'mes', 'Manes.05G046100' => 'mes', 'Manes.08G080900' => 'mes', 'Manes.10G049400' => 'mes', 'Mapoly0009s0186' => 'mpo', 'Mapoly0036s0118' => 'mpo', 'Mapoly0101s0046' => 'mpo', 'MBI04_g30218_MAGBIO' => 'mbi', 'MBI04_g35564_MAGBIO' => 'mbi', 'MBI12_g34011_MAGBIO' => 'mbi', 'MBI14_g04655_MAGBIO' => 'mbi', 'MCO07G653' => 'mco', 'MCO10G173' => 'mco', 'MD01G1087100' => 'mdo', 'MD01G1104200' => 'mdo', 'MD02G1205100' => 'mdo', 'MD04G1079200' => 'mdo', 'MD04G1131400' => 'mdo', 'MD07G1121600' => 'mdo', 'MD07G1157300' => 'mdo', 'MD07G1171000' => 'mdo', 'MD12G1144500' => 'mdo', 'Medtr1g094610' => 'mtr', 'Medtr4g021795' => 'mtr', 'Medtr4g023760' => 'mtr', 'Medtr7g118050' => 'mtr', 'MELO3C005582.2' => 'cme', 'MELO3C005989.2' => 'cme', 'MELO3C006192.2' => 'cme', 'MELO3C009248.2' => 'cme', 'MELO3C019817.2' => 'cme', 'Migut.B01625' => 'egut', 'Migut.B01915' => 'egut', 'Migut.F01721' => 'egut', 'Migut.J00314' => 'egut', 'MSTRG.20742' => 'ama', 'MSTRG.8134' => 'ama', 'Nitab4.5_0000096g0010' => 'nta', 'Nitab4.5_0000202g0030' => 'nta', 'Nitab4.5_0000216g0370' => 'nta', 'Nitab4.5_0000457g0230' => 'nta', 'Nitab4.5_0001702g0170' => 'nta', 'Nitab4.5_0003607g0010' => 'nta', 'Nitab4.5_0004917g0020' => 'nta', 'Nitab4.5_0007059g0010' => 'nta', 'Nitab4.5_0007184g0010' => 'nta', 'Nitab4.5_0007346g0020' => 'nta', 'Nn1g00410' => 'nnu', 'Nn1g01252' => 'nnu', 'Nn2g11168' => 'nnu', 'Nn2g13403' => 'nnu', 'Nn2g13760' => 'nnu', 'Nn4g26380' => 'nnu', 'Oeu000806.2' => 'oeu', 'Oeu005788.1' => 'oeu', 'Oeu006900.3' => 'oeu', 'Oeu007797.1' => 'oeu', 'Oeu011932.1' => 'oeu', 'Oeu022739.1' => 'oeu', 'Oeu037918.1' => 'oeu', 'Oeu055490.2' => 'oeu', 'Os01g0844400' => 'osa', 'Os02g0819100' => 'osa', 'Os03g0804300' => 'osa', 'Os05g0458000' => 'osa', 'Os07g0467800' => 'osa', 'Os12g0602200' => 'osa', 'Peaxi162Scf00013g03444' => 'pax', 'Peaxi162Scf00094g01120' => 'pax', 'Peaxi162Scf00191g01211' => 'pax', 'Peaxi162Scf00238g01110' => 'pax', 'Peaxi162Scf00330g00719' => 'pax', 'Peaxi162Scf00627g00018' => 'pax', 'PGR031G2686' => 'pgr', 'PGR042G0809' => 'pgr', 'PGR142G0193' => 'pgr', 'PGSC0003DMG400011066' => 'stu', 'PGSC0003DMG400012041' => 'stu', 'PGSC0003DMG400013678' => 'stu', 'PGSC0003DMG400023477' => 'stu', 'PGSC0003DMG400025956' => 'stu', 'PGSC0003DMG401019151' => 'stu', 'Phvul.006G116400' => 'pvu', 'Phvul.007G097300' => 'pvu', 'Phvul.010G015000' => 'pvu', 'Phvul.010G083900' => 'pvu', 'Potri.001G117100' => 'ptr', 'Potri.002G147300' => 'ptr', 'Potri.003G115600' => 'ptr', 'Potri.006G087400' => 'ptr', 'Potri.010G226100' => 'ptr', 'Potri.014G069200' => 'ptr', 'Potri.014G104000' => 'ptr', 'Potri.016G100200' => 'ptr', 'Pp3c10_20450' => 'ppa', 'Pp3c1_42400' => 'ppa', 'Pp3c3_24390' => 'ppa', 'Pp3c3_2860' => 'ppa', 'PRCOL_00003193' => 'pco', 'Prupe.2G144500' => 'ppe', 'Prupe.2G195700' => 'ppe', 'Prupe.2G209800' => 'ppe', 'Prupe.5G080000' => 'ppe', 'Prupe.6G257900' => 'ppe', 'Psat3g001160' => 'psa', 'Psat6g181880' => 'psa', 'Psat7g233720' => 'psa', 'PSO063G7587' => 'pso', 'PSO339G2145' => 'pso', 'PSO339G3369' => 'pso', 'PSO478G2747' => 'pso', 'PSO513G0140' => 'pso', 'PSO782G1614' => 'pso', 'PSO782G4889' => 'pso', 'PSO782G5485' => 'pso', 'PSO801G0241' => 'pso', 'QL07p048854' => 'qlo', 'QL08p046745' => 'qlo', 'QL08p052606' => 'qlo', 'QL08p053414' => 'qlo', 'QL08p054868' => 'qlo', 'RcHm_v2.0_Chr1g0350251' => 'rch', 'RcHm_v2.0_Chr1g0360851' => 'rch', 'RcHm_v2.0_Chr1g0362791' => 'rch', 'RcHm_v2.0_Chr3g0466281' => 'rch', 'RcHm_v2.0_Chr7g0201481' => 'rch', 'Rhsim01G0148600' => 'rsi', 'Rhsim05G0194400' => 'rsi', 'Rhsim07G0000700' => 'rsi', 'Rhsim07G0000800' => 'rsi', 'Rhsim07G0027900' => 'rsi', 'Rhsim09G0149500' => 'rsi', 'RhsimUnG0186900' => 'rsi', 'Sabra01G0089900' => 'sbr', 'Sabra02G0114700' => 'sbr', 'Sabra02G0116300' => 'sbr', 'Sabra03G0080100' => 'sbr', 'Sabra08G0024300' => 'sbr', 'Sabra10G0174300' => 'sbr', 'Sabra14G0048900' => 'sbr', 'Sabra14G0076500' => 'sbr', 'SalBow5G2513' => 'sbo', 'Sc01g0002300' => 'sci', 'Sc01g0004450' => 'sci', 'Sc06g0001680' => 'sci', 'Sc23g0003580' => 'sci', 'Sed0000913' => 'sed', 'Sed0001655' => 'sed', 'Sed0007745' => 'sed', 'Sed0010951' => 'sed', 'Sed0017599' => 'sed', 'Sed0021405' => 'sed', 'Sed0022810' => 'sed', 'SEGI_07099' => 'sgi', 'SEGI_11931' => 'sgi', 'SEGI_13187' => 'sgi', 'SEGI_29958' => 'sgi', 'SEGI_36351' => 'sgi', 'SGA_v2.0_scaffold126G33770' => 'sas', 'SGA_v2.0_scaffold153G37003' => 'sas', 'SGA_v2.0_scaffold2G01359' => 'sas', 'SGA_v2.0_scaffold5G03064' => 'sas', 'SGA_v2.0_scaffold95G28903' => 'sas', 'SHI12701' => 'shi', 'SHI26410' => 'shi', 'SHI38997' => 'shi', 'SHI53759' => 'shi', 'SHI53886' => 'shi', 'SHI54714' => 'shi', 'SMO011G0041' => 'smo', 'SMO146G0251' => 'smo', 'SMO160G0004' => 'smo', 'SMO174G0057' => 'smo', 'SMO244G0089' => 'smo', 'SMO296G0011' => 'smo', 'Solyc01g091280.3' => 'sly', 'Solyc05g047610.3' => 'sly', 'Solyc05g047640.3' => 'sly', 'Solyc05g055630.3' => 'sly', 'Solyc10g018160.2' => 'sly', 'Solyc10g084820.2' => 'sly', 'Solyc10g086565.2' => 'sly', 'Sopen01g037030' => 'spe', 'Sopen05g027920' => 'spe', 'Sopen05g034070' => 'spe', 'Sopen10g007260' => 'spe', 'Sopen10g034260' => 'spe', 'Sopen10g035950' => 'spe', 'Sp3g07710' => 'spa', 'Sp4g27420' => 'spa', 'Sp5g02450' => 'spa', 'Sp6g01280' => 'spa', 'Sp6g38480' => 'spa', 'Sp7g20780' => 'spa', 'TAR374G1413' => 'tar', 'TAR623G1777' => 'tar', 'TAR629G2370' => 'tar', 'TAR633G1759' => 'tar', 'TAR636G3387' => 'tar', 'THA.LOC104802447' => 'tha', 'THA.LOC104813916' => 'tha', 'THA.LOC104816423' => 'tha', 'THA.LOC104817246' => 'tha', 'THA.LOC104825895' => 'tha', 'Thecc.01G335200' => 'tca', 'Thecc.01G377400' => 'tca', 'Thecc.03G262200' => 'tca', 'Thecc.05G036800' => 'tca', 'Thecc.10G080500' => 'tca', 'Thecc.10G080800' => 'tca', 'Thhalv10001560m.g' => 'esa', 'Thhalv10006120m.g' => 'esa', 'Thhalv10014375m.g' => 'esa', 'Thhalv10021264m.g' => 'esa', 'Thhalv10028856m.g' => 'esa', 'TPR.G1914' => 'tpr', 'TPR.G4757' => 'tpr', 'TPR.G5595' => 'tpr', 'TWI14G0952' => 'twi', 'TWI14G1307' => 'twi', 'TWI38G2143' => 'twi', 'TWI59G0826' => 'twi', 'TWI77G0527' => 'twi', 'TWI81G0150' => 'twi', 'unitig_21.g21018' => 'ugi', 'unitig_26.g9725' => 'ugi', 'unitig_744.g24653' => 'ugi', 'unitig_749.g13778' => 'ugi', 'unitig_899.g15035' => 'ugi', 'vmacro04296' => 'vma', 'vmacro04852' => 'vma', 'vmacro13404' => 'vma', 'vmacro20169' => 'vma', 'vmacro21014' => 'vma', 'VMungo0331G0237' => 'vmu', 'VMungo0331G0706' => 'vmu', 'VMungo0331G1361' => 'vmu', 'VMungo0331G1489' => 'vmu', 'VMungo0540G1037' => 'vmu', 'VMungo0720G2487' => 'vmu', 'VMungo0720G2721' => 'vmu', 'Zm00001eb086860' => 'zma', 'Zm00001eb104760' => 'zma', 'Zm00001eb148220' => 'zma', 'Zm00001eb259030' => 'zma', 'Zm00001eb289590' => 'zma', 'Zm00001eb420150' => 'zma' ) $gf_id = 'HOM05D000968' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000968' ) $data_identifier = 'HOM05D000968' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 19, 'bol' => (int) 9, 'bra' => (int) 12, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 5, 'ccan' => (int) 7, 'cde' => (int) 5, 'cfa' => (int) 8, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 4, 'dca' => (int) 5, 'din' => (int) 5, 'dzi' => (int) 12, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 25, 'fve' => (int) 5, 'gma' => (int) 9, 'ghi' => (int) 18, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 7, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 5, 'sun' => (int) 2, 'lal' => (int) 9, 'lja' => (int) 5, 'lonja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 9, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 2, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 3, 'stu' => (int) 6, 'pvu' => (int) 4, 'ptr' => (int) 8, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 3, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 1, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 5, 'sas' => (int) 5, 'shi' => (int) 6, 'smo' => (int) 6, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 3, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420150' $species_info = array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ) $local_species = 'spa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000968', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p31690' => 'bna', 'A03p36040' => 'bna', 'A03p53730' => 'bna', 'A04p01410' => 'bna', 'A05p05420' => 'bna', 'A05p39630' => 'bna', 'A05p39640' => 'bna', 'A09p00970' => 'bna', 'A09p53060' => 'bna', 'A10p31890' => 'bna', 'Aa31LG10G15040' => 'aar', 'Aa31LG1G21090' => 'aar', 'Aa31LG1G26900' => 'aar', 'Aa31LG3G1820' => 'aar', 'Aa31LG5G1100' => 'aar', 'Aa31LG6G4740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2265' => 'aag', 'Actinidia07998' => 'ach', 'Actinidia11266' => 'ach', 'Actinidia12682' => 'ach', 'Actinidia26479' => 'ach', 'Actinidia31406' => 'ach', 'Actinidia32437' => 'ach', 'Actinidia38862' => 'ach', 'Ah.05g174230' => 'amhyb', 'Ah.05g179070' => 'amhyb', 'Ah.05g179090' => 'amhyb', 'Ah.12g059950' => 'amhyb', 'AL3G20480' => 'aly', 'AL4G44520' => 'aly', 'AL5G43110' => 'aly', 'AL6G13890' => 'aly', 'AL6G52620' => 'aly', 'AL7G30830' => 'aly', 'Aqoxy1G00899' => 'aox', 'Aqoxy5G04333' => 'aox', 'Aqoxy7G00641' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3IZ0NN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4EF6AW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W9P8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79GA3M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C43NQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFCU6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G95YVJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCHK29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LU1UG8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX91RN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGB4B1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8DA0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9H7JI' => 'arhy', 'AT3G09320' => 'ath', 'AT3G60800' => 'ath', 'AT4G00840' => 'ath', 'AT4G22750' => 'ath', 'AT5G04270' => 'ath', 'ATR0090G003' => 'atr', 'ATR0559G349' => 'atr', 'ATR0680G261' => 'atr', 'ATR0810G048' => 'atr', 'Atru.chr12.831' => 'acertr', 'Atru.chr5.303' => 'acertr', 'Atru.chr5.748' => 'acertr', 'Atru.chr8.1999' => 'acertr', 'Atru.chr9.1436' => 'acertr', 'AUR62004211' => 'cqu', 'AUR62004548' => 'cqu', 'AUR62013637' => 'cqu', 'AUR62022662' => 'cqu', 'AUR62025777' => 'cqu', 'AUR62042386' => 'cqu', 'BcaB01g02310' => 'bca', 'BcaB01g06062' => 'bca', 'BcaB02g08975' => 'bca', 'BcaB02g08980' => 'bca', 'BcaC01g04228' => 'bca', 'BcaC01g06830' => 'bca', 'BcaC02g10186' => 'bca', 'BcaC02g12214' => 'bca', 'BcaC04g24101' => 'bca', 'BcaC05g29520' => 'bca', 'BcaC05g29661' => 'bca', 'BcaC06g32130' => 'bca', 'BcaC06g32131' => 'bca', 'BcaC07g40601' => 'bca', 'BcaC07g42641' => 'bca', 'BcaNung01038' => 'bca', 'BcaNung01676' => 'bca', 'BcaNung02480' => 'bca', 'BcaNung07376' => 'bca', 'BolC3t16146H' => 'bol', 'BolC3t16637H' => 'bol', 'BolC4t22257H' => 'bol', 'BolC4t24728H' => 'bol', 'BolC5t34517H' => 'bol', 'BolC7t45703H' => 'bol', 'BolC8t51166H' => 'bol', 'BolC9t53038H' => 'bol', 'BolC9t60000H' => 'bol', 'BraA01t01345Z' => 'bra', 'BraA01t01346Z' => 'bra', 'BraA01t01348Z' => 'bra', 'BraA03t12347Z' => 'bra', 'BraA03t12775Z' => 'bra', 'BraA03t14439Z' => 'bra', 'BraA04t15860Z' => 'bra', 'BraA05t19511Z' => 'bra', 'BraA05t22746Z' => 'bra', 'BraA09t35767Z' => 'bra', 'BraA09t40732Z' => 'bra', 'BraA10t45233Z' => 'bra', 'C03p38720' => 'bna', 'C03p43680' => 'bna', 'C04p06350' => 'bna', 'C04p31800' => 'bna', 'C05p58680' => 'bna', 'C07p52110' => 'bna', 'C08p35760' => 'bna', 'C09p01050' => 'bna', 'C09p72600' => 'bna', 'CAN.G106.2' => 'can', 'CAN.G1482.1' => 'can', 'CAN.G324.12' => 'can', 'CAN.G388.20' => 'can', 'CAN.G412.7' => 'can', 'CAN.G694.32' => 'can', 'CAN.G92.12' => 'can', 'CANSAT11G2353' => 'cansat', 'CANSAT21G1398' => 'cansat', 'CANSAT56G2456' => 'cansat', 'CANSAT56G3031' => 'cansat', 'CANSAT56G4539' => 'cansat', 'CARHR083680' => 'chi', 'CARHR171190' => 'chi', 'CARHR209010' => 'chi', 'CARHR229680' => 'chi', 'CARHR249490' => 'chi', 'Carub.0003s0844' => 'cru', 'Carub.0005s2755' => 'cru', 'Carub.0006s0322' => 'cru', 'Carub.0006s3586' => 'cru', 'Carub.0007s1855' => 'cru', 'Ca_07808_v3' => 'car', 'Ca_09535_v3' => 'car', 'Ca_10548_v3' => 'car', 'Ca_19913_v3' => 'car', 'Ca_19916_v3' => 'car', 'Ca_19975_v3' => 'car', 'CBR_g22876' => 'cbr', 'CBR_g22879' => 'cbr', 'CBR_g38491' => 'cbr', 'CBR_g54185' => 'cbr', 'CBR_g54190' => 'cbr', 'Cc02_g11020' => 'ccan', 'Cc02_g23920' => 'ccan', 'Cc02_g39860' => 'ccan', 'Cc02_g39870' => 'ccan', 'Cc03_g06760' => 'ccan', 'Cc06_g02450' => 'ccan', 'Cc09_g09450' => 'ccan', 'CDE02G1959' => 'cde', 'CDE04G0600' => 'cde', 'CDE07G1996' => 'cde', 'CDE07G2078' => 'cde', 'CDE11G0611' => 'cde', 'Cfa001683' => 'cfa', 'Cfa001734' => 'cfa', 'Cfa001737' => 'cfa', 'Cfa003751' => 'cfa', 'Cfa012019' => 'cfa', 'Cfa017353' => 'cfa', 'Cfa017732' => 'cfa', 'Cfa022464' => 'cfa', 'Ciclev10012400m.g' => 'ccl', 'Ciclev10021242m.g' => 'ccl', 'Ciclev10021302m.g' => 'ccl', 'Ciclev10021463m.g' => 'ccl', 'Ciclev10032359m.g' => 'ccl', 'CiPaw.01G081000' => 'cil', 'CiPaw.01G262500' => 'cil', 'CiPaw.01G269800' => 'cil', 'CiPaw.02G168400' => 'cil', 'CiPaw.05G119500' => 'cil', 'CiPaw.11G147300' => 'cil', 'ClCG01G003630' => 'cla', 'ClCG05G000510' => 'cla', 'ClCG05G002300' => 'cla', 'ClCG08G007650' => 'cla', 'ClCG10G021250' => 'cla', 'COL.COLO4_06218' => 'col', 'COL.COLO4_12538' => 'col', 'COL.COLO4_14775' => 'col', 'COL.COLO4_23875' => 'col', 'Cpa.g.sc141.16' => 'cpa', 'Cpa.g.sc169.16' => 'cpa', 'Cpa.g.sc244.4' => 'cpa', 'Cpa.g.sc244.5' => 'cpa', 'Cpa.g.sc29.87' => 'cpa', 'Cpa.g.sc53.115' => 'cpa', 'Cre03.g207502' => 'cre', 'Cre06.g277000' => 'cre', 'Cre09.g394050' => 'cre', 'CsaV3_3G007680' => 'csa', 'CsaV3_3G009710' => 'csa', 'CsaV3_3G034790' => 'csa', 'CsaV3_5G003750' => 'csa', 'CsaV3_6G036620' => 'csa', 'CSS0002288' => 'camsi', 'CSS0011250' => 'camsi', 'CSS0021619' => 'camsi', 'CSS0046701' => 'camsi', 'DCAR_006420' => 'dca', 'DCAR_006865' => 'dca', 'DCAR_008558' => 'dca', 'DCAR_028754' => 'dca', 'DCAR_028755' => 'dca', 'Dinv31218' => 'din', 'Dinv32371' => 'din', 'Dinv34250' => 'din', 'Dinv37156' => 'din', 'Dinv43704' => 'din', 'Duzib093G1811' => 'dzi', 'Duzib106G1622' => 'dzi', 'Duzib114G0504' => 'dzi', 'Duzib128G0338' => 'dzi', 'Duzib128G1577' => 'dzi', 'Duzib133G0104' => 'dzi', 'Duzib133G1080' => 'dzi', 'Duzib138G0324' => 'dzi', 'Duzib138G0394' => 'dzi', 'Duzib205G0122' => 'dzi', 'Duzib268G1020' => 'dzi', 'Duzib268G1359' => 'dzi', 'ECA232G3929' => 'eca', 'ECA236G2210' => 'eca', 'ECA236G2287' => 'eca', 'ECA240G4568' => 'eca', 'ECA247G0894' => 'eca', 'EL10Ac1g00200' => 'bvu', 'EL10Ac1g00886' => 'bvu', 'EL10As1g23091' => 'bvu', 'EL10As1g23092' => 'bvu', 'Eucgr.A01284' => 'egr', 'Eucgr.A01285' => 'egr', 'Eucgr.D02456' => 'egr', 'Eucgr.E00018' => 'egr', 'Eucgr.E01439' => 'egr', 'Eucgr.G02859' => 'egr', 'FAN01G0168' => 'fan', 'FAN01G0453' => 'fan', 'FAN01G2761' => 'fan', 'FAN02G1239' => 'fan', 'FAN03G0645' => 'fan', 'FAN03G2707' => 'fan', 'FAN03G2978' => 'fan', 'FAN04G0227' => 'fan', 'FAN06G0091' => 'fan', 'FAN06G1418' => 'fan', 'FAN06G1512' => 'fan', 'FAN06G1986' => 'fan', 'FAN06G2905' => 'fan', 'FAN06G4325' => 'fan', 'FAN08G0033' => 'fan', 'FAN09G0642' => 'fan', 'FAN10G1763' => 'fan', 'FAN10G2026' => 'fan', 'FAN10G2513' => 'fan', 'FAN10G3402' => 'fan', 'FAN10G3564' => 'fan', 'FAN10G3987' => 'fan', 'FAN13G1490' => 'fan', 'FAN14G5857' => 'fan', 'FAN18G1188' => 'fan', 'FvH4_5g00750' => 'fve', 'FvH4_6g13410' => 'fve', 'FvH4_7g11740' => 'fve', 'FvH4_7g17410' => 'fve', 'FvH4_7g18860' => 'fve', 'Glyma.01G099100' => 'gma', 'Glyma.01G142300' => 'gma', 'Glyma.03G025500' => 'gma', 'Glyma.03G069700' => 'gma', 'Glyma.03G260000' => 'gma', 'Glyma.09G269800' => 'gma', 'Glyma.10G208700' => 'gma', 'Glyma.18G220400' => 'gma', 'Glyma.20G182000' => 'gma', 'Gohir.A01G221726' => 'ghi', 'Gohir.A07G134600' => 'ghi', 'Gohir.A07G146000' => 'ghi', 'Gohir.A08G173900' => 'ghi', 'Gohir.A09G194900' => 'ghi', 'Gohir.A10G204100' => 'ghi', 'Gohir.A11G080600' => 'ghi', 'Gohir.A11G327500' => 'ghi', 'Gohir.A12G101800' => 'ghi', 'Gohir.D01G211200' => 'ghi', 'Gohir.D07G139200' => 'ghi', 'Gohir.D07G152100' => 'ghi', 'Gohir.D08G192600' => 'ghi', 'Gohir.D09G189200' => 'ghi', 'Gohir.D10G212000' => 'ghi', 'Gohir.D11G085200' => 'ghi', 'Gohir.D11G346400' => 'ghi', 'Gohir.D12G104800' => 'ghi', 'Gorai.001G151300' => 'gra', 'Gorai.001G174100' => 'gra', 'Gorai.002G257000' => 'gra', 'Gorai.004G202600' => 'gra', 'Gorai.007G090900' => 'gra', 'Gorai.007G376700' => 'gra', 'Gorai.008G114100' => 'gra', 'Gorai.011G237900' => 'gra', 'GSVIVG01005450001' => 'vvi', 'GSVIVG01016232001' => 'vvi', 'GSVIVG01026157001' => 'vvi', 'GSVIVG01027419001' => 'vvi', 'GSVIVG01027631001' => 'vvi', 'GSVIVG01034143001' => 'vvi', 'HanXRQChr03g0093921' => 'han', 'HanXRQChr04g0120001' => 'han', 'HanXRQChr04g0122561' => 'han', 'HanXRQChr09g0246851' => 'han', 'HanXRQChr10g0293311' => 'han', 'HanXRQChr13g0425231' => 'han', 'HanXRQChr16g0532571' => 'han', 'Haze_09050' => 'cav', 'Haze_15715' => 'cav', 'Haze_15716' => 'cav', 'Haze_16803' => 'cav', 'Haze_16850' => 'cav', 'Hma1.2p1_0301F.1_g118655' => 'hma', 'Hma1.2p1_0309F.1_g120590' => 'hma', 'Hma1.2p1_0936F.1_g238900' => 'hma', 'Hma1.2p1_3552F.1_g336740' => 'hma', 'HPP92_003520' => 'vpl', 'HPP92_006628' => 'vpl', 'HPP92_006645' => 'vpl', 'HPP92_014669' => 'vpl', 'HPP92_015077' => 'vpl', 'Hund16742' => 'sun', 'Hund17022' => 'sun', 'Lalb_Chr02g0152131' => 'lal', 'Lalb_Chr05g0225371' => 'lal', 'Lalb_Chr07g0189841' => 'lal', 'Lalb_Chr07g0192961' => 'lal', 'Lalb_Chr12g0208221' => 'lal', 'Lalb_Chr13g0291211' => 'lal', 'Lalb_Chr13g0291781' => 'lal', 'Lalb_Chr18g0044651' => 'lal', 'Lalb_Chr21g0313731' => 'lal', 'Lj1g0022533' => 'lja', 'Lj2A18T50' => 'lonja', 'Lj2A92G93' => 'lonja', 'Lj3A965T73' => 'lonja', 'Lj3g0000673' => 'lja', 'Lj3g0002666' => 'lja', 'Lj4g0016985' => 'lja', 'Lj5g0003625' => 'lja', 'Lj7A529G36' => 'lonja', 'Lj9A569T49' => 'lonja', 'Lj9A604T63' => 'lonja', 'Lsat_1_v5_gn_3_132060' => 'lsa', 'Lsat_1_v5_gn_4_68941' => 'lsa', 'Lsat_1_v5_gn_5_95580' => 'lsa', 'Lsat_1_v5_gn_7_161' => 'lsa', 'Lsat_1_v5_gn_7_7041' => 'lsa', 'Lsat_1_v5_gn_9_33481' => 'lsa', 'Lsat_1_v5_gn_9_68260' => 'lsa', 'Manes.01G073100' => 'mes', 'Manes.01G266300' => 'mes', 'Manes.02G033300' => 'mes', 'Manes.05G017900' => 'mes', 'Manes.05G046100' => 'mes', 'Manes.08G080900' => 'mes', 'Manes.10G049400' => 'mes', 'Mapoly0009s0186' => 'mpo', 'Mapoly0036s0118' => 'mpo', 'Mapoly0101s0046' => 'mpo', 'MBI04_g30218_MAGBIO' => 'mbi', 'MBI04_g35564_MAGBIO' => 'mbi', 'MBI12_g34011_MAGBIO' => 'mbi', 'MBI14_g04655_MAGBIO' => 'mbi', 'MCO07G653' => 'mco', 'MCO10G173' => 'mco', 'MD01G1087100' => 'mdo', 'MD01G1104200' => 'mdo', 'MD02G1205100' => 'mdo', 'MD04G1079200' => 'mdo', 'MD04G1131400' => 'mdo', 'MD07G1121600' => 'mdo', 'MD07G1157300' => 'mdo', 'MD07G1171000' => 'mdo', 'MD12G1144500' => 'mdo', 'Medtr1g094610' => 'mtr', 'Medtr4g021795' => 'mtr', 'Medtr4g023760' => 'mtr', 'Medtr7g118050' => 'mtr', 'MELO3C005582.2' => 'cme', 'MELO3C005989.2' => 'cme', 'MELO3C006192.2' => 'cme', 'MELO3C009248.2' => 'cme', 'MELO3C019817.2' => 'cme', 'Migut.B01625' => 'egut', 'Migut.B01915' => 'egut', 'Migut.F01721' => 'egut', 'Migut.J00314' => 'egut', 'MSTRG.20742' => 'ama', 'MSTRG.8134' => 'ama', 'Nitab4.5_0000096g0010' => 'nta', 'Nitab4.5_0000202g0030' => 'nta', 'Nitab4.5_0000216g0370' => 'nta', 'Nitab4.5_0000457g0230' => 'nta', 'Nitab4.5_0001702g0170' => 'nta', 'Nitab4.5_0003607g0010' => 'nta', 'Nitab4.5_0004917g0020' => 'nta', 'Nitab4.5_0007059g0010' => 'nta', 'Nitab4.5_0007184g0010' => 'nta', 'Nitab4.5_0007346g0020' => 'nta', 'Nn1g00410' => 'nnu', 'Nn1g01252' => 'nnu', 'Nn2g11168' => 'nnu', 'Nn2g13403' => 'nnu', 'Nn2g13760' => 'nnu', 'Nn4g26380' => 'nnu', 'Oeu000806.2' => 'oeu', 'Oeu005788.1' => 'oeu', 'Oeu006900.3' => 'oeu', 'Oeu007797.1' => 'oeu', 'Oeu011932.1' => 'oeu', 'Oeu022739.1' => 'oeu', 'Oeu037918.1' => 'oeu', 'Oeu055490.2' => 'oeu', 'Os01g0844400' => 'osa', 'Os02g0819100' => 'osa', 'Os03g0804300' => 'osa', 'Os05g0458000' => 'osa', 'Os07g0467800' => 'osa', 'Os12g0602200' => 'osa', 'Peaxi162Scf00013g03444' => 'pax', 'Peaxi162Scf00094g01120' => 'pax', 'Peaxi162Scf00191g01211' => 'pax', 'Peaxi162Scf00238g01110' => 'pax', 'Peaxi162Scf00330g00719' => 'pax', 'Peaxi162Scf00627g00018' => 'pax', 'PGR031G2686' => 'pgr', 'PGR042G0809' => 'pgr', 'PGR142G0193' => 'pgr', 'PGSC0003DMG400011066' => 'stu', 'PGSC0003DMG400012041' => 'stu', 'PGSC0003DMG400013678' => 'stu', 'PGSC0003DMG400023477' => 'stu', 'PGSC0003DMG400025956' => 'stu', 'PGSC0003DMG401019151' => 'stu', 'Phvul.006G116400' => 'pvu', 'Phvul.007G097300' => 'pvu', 'Phvul.010G015000' => 'pvu', 'Phvul.010G083900' => 'pvu', 'Potri.001G117100' => 'ptr', 'Potri.002G147300' => 'ptr', 'Potri.003G115600' => 'ptr', 'Potri.006G087400' => 'ptr', 'Potri.010G226100' => 'ptr', 'Potri.014G069200' => 'ptr', 'Potri.014G104000' => 'ptr', 'Potri.016G100200' => 'ptr', 'Pp3c10_20450' => 'ppa', 'Pp3c1_42400' => 'ppa', 'Pp3c3_24390' => 'ppa', 'Pp3c3_2860' => 'ppa', 'PRCOL_00003193' => 'pco', 'Prupe.2G144500' => 'ppe', 'Prupe.2G195700' => 'ppe', 'Prupe.2G209800' => 'ppe', 'Prupe.5G080000' => 'ppe', 'Prupe.6G257900' => 'ppe', 'Psat3g001160' => 'psa', 'Psat6g181880' => 'psa', 'Psat7g233720' => 'psa', 'PSO063G7587' => 'pso', 'PSO339G2145' => 'pso', 'PSO339G3369' => 'pso', 'PSO478G2747' => 'pso', 'PSO513G0140' => 'pso', 'PSO782G1614' => 'pso', 'PSO782G4889' => 'pso', 'PSO782G5485' => 'pso', 'PSO801G0241' => 'pso', 'QL07p048854' => 'qlo', 'QL08p046745' => 'qlo', 'QL08p052606' => 'qlo', 'QL08p053414' => 'qlo', 'QL08p054868' => 'qlo', 'RcHm_v2.0_Chr1g0350251' => 'rch', 'RcHm_v2.0_Chr1g0360851' => 'rch', 'RcHm_v2.0_Chr1g0362791' => 'rch', 'RcHm_v2.0_Chr3g0466281' => 'rch', 'RcHm_v2.0_Chr7g0201481' => 'rch', 'Rhsim01G0148600' => 'rsi', 'Rhsim05G0194400' => 'rsi', 'Rhsim07G0000700' => 'rsi', 'Rhsim07G0000800' => 'rsi', 'Rhsim07G0027900' => 'rsi', 'Rhsim09G0149500' => 'rsi', 'RhsimUnG0186900' => 'rsi', 'Sabra01G0089900' => 'sbr', 'Sabra02G0114700' => 'sbr', 'Sabra02G0116300' => 'sbr', 'Sabra03G0080100' => 'sbr', 'Sabra08G0024300' => 'sbr', 'Sabra10G0174300' => 'sbr', 'Sabra14G0048900' => 'sbr', 'Sabra14G0076500' => 'sbr', 'SalBow5G2513' => 'sbo', 'Sc01g0002300' => 'sci', 'Sc01g0004450' => 'sci', 'Sc06g0001680' => 'sci', 'Sc23g0003580' => 'sci', 'Sed0000913' => 'sed', 'Sed0001655' => 'sed', 'Sed0007745' => 'sed', 'Sed0010951' => 'sed', 'Sed0017599' => 'sed', 'Sed0021405' => 'sed', 'Sed0022810' => 'sed', 'SEGI_07099' => 'sgi', 'SEGI_11931' => 'sgi', 'SEGI_13187' => 'sgi', 'SEGI_29958' => 'sgi', 'SEGI_36351' => 'sgi', 'SGA_v2.0_scaffold126G33770' => 'sas', 'SGA_v2.0_scaffold153G37003' => 'sas', 'SGA_v2.0_scaffold2G01359' => 'sas', 'SGA_v2.0_scaffold5G03064' => 'sas', 'SGA_v2.0_scaffold95G28903' => 'sas', 'SHI12701' => 'shi', 'SHI26410' => 'shi', 'SHI38997' => 'shi', 'SHI53759' => 'shi', 'SHI53886' => 'shi', 'SHI54714' => 'shi', 'SMO011G0041' => 'smo', 'SMO146G0251' => 'smo', 'SMO160G0004' => 'smo', 'SMO174G0057' => 'smo', 'SMO244G0089' => 'smo', 'SMO296G0011' => 'smo', 'Solyc01g091280.3' => 'sly', 'Solyc05g047610.3' => 'sly', 'Solyc05g047640.3' => 'sly', 'Solyc05g055630.3' => 'sly', 'Solyc10g018160.2' => 'sly', 'Solyc10g084820.2' => 'sly', 'Solyc10g086565.2' => 'sly', 'Sopen01g037030' => 'spe', 'Sopen05g027920' => 'spe', 'Sopen05g034070' => 'spe', 'Sopen10g007260' => 'spe', 'Sopen10g034260' => 'spe', 'Sopen10g035950' => 'spe', 'Sp3g07710' => 'spa', 'Sp4g27420' => 'spa', 'Sp5g02450' => 'spa', 'Sp6g01280' => 'spa', 'Sp6g38480' => 'spa', 'Sp7g20780' => 'spa', 'TAR374G1413' => 'tar', 'TAR623G1777' => 'tar', 'TAR629G2370' => 'tar', 'TAR633G1759' => 'tar', 'TAR636G3387' => 'tar', 'THA.LOC104802447' => 'tha', 'THA.LOC104813916' => 'tha', 'THA.LOC104816423' => 'tha', 'THA.LOC104817246' => 'tha', 'THA.LOC104825895' => 'tha', 'Thecc.01G335200' => 'tca', 'Thecc.01G377400' => 'tca', 'Thecc.03G262200' => 'tca', 'Thecc.05G036800' => 'tca', 'Thecc.10G080500' => 'tca', 'Thecc.10G080800' => 'tca', 'Thhalv10001560m.g' => 'esa', 'Thhalv10006120m.g' => 'esa', 'Thhalv10014375m.g' => 'esa', 'Thhalv10021264m.g' => 'esa', 'Thhalv10028856m.g' => 'esa', 'TPR.G1914' => 'tpr', 'TPR.G4757' => 'tpr', 'TPR.G5595' => 'tpr', 'TWI14G0952' => 'twi', 'TWI14G1307' => 'twi', 'TWI38G2143' => 'twi', 'TWI59G0826' => 'twi', 'TWI77G0527' => 'twi', 'TWI81G0150' => 'twi', 'unitig_21.g21018' => 'ugi', 'unitig_26.g9725' => 'ugi', 'unitig_744.g24653' => 'ugi', 'unitig_749.g13778' => 'ugi', 'unitig_899.g15035' => 'ugi', 'vmacro04296' => 'vma', 'vmacro04852' => 'vma', 'vmacro13404' => 'vma', 'vmacro20169' => 'vma', 'vmacro21014' => 'vma', 'VMungo0331G0237' => 'vmu', 'VMungo0331G0706' => 'vmu', 'VMungo0331G1361' => 'vmu', 'VMungo0331G1489' => 'vmu', 'VMungo0540G1037' => 'vmu', 'VMungo0720G2487' => 'vmu', 'VMungo0720G2721' => 'vmu', 'Zm00001eb086860' => 'zma', 'Zm00001eb104760' => 'zma', 'Zm00001eb148220' => 'zma', 'Zm00001eb259030' => 'zma', 'Zm00001eb289590' => 'zma', 'Zm00001eb420150' => 'zma' ), 'gf_id' => 'HOM05D000968', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000968' ), 'data_identifier' => 'HOM05D000968', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000968', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p31690' => 'bna', 'A03p36040' => 'bna', 'A03p53730' => 'bna', 'A04p01410' => 'bna', 'A05p05420' => 'bna', 'A05p39630' => 'bna', 'A05p39640' => 'bna', 'A09p00970' => 'bna', 'A09p53060' => 'bna', 'A10p31890' => 'bna', 'Aa31LG10G15040' => 'aar', 'Aa31LG1G21090' => 'aar', 'Aa31LG1G26900' => 'aar', 'Aa31LG3G1820' => 'aar', 'Aa31LG5G1100' => 'aar', 'Aa31LG6G4740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2265' => 'aag', 'Actinidia07998' => 'ach', 'Actinidia11266' => 'ach', 'Actinidia12682' => 'ach', 'Actinidia26479' => 'ach', 'Actinidia31406' => 'ach', 'Actinidia32437' => 'ach', 'Actinidia38862' => 'ach', 'Ah.05g174230' => 'amhyb', 'Ah.05g179070' => 'amhyb', 'Ah.05g179090' => 'amhyb', 'Ah.12g059950' => 'amhyb', 'AL3G20480' => 'aly', 'AL4G44520' => 'aly', 'AL5G43110' => 'aly', 'AL6G13890' => 'aly', 'AL6G52620' => 'aly', 'AL7G30830' => 'aly', 'Aqoxy1G00899' => 'aox', 'Aqoxy5G04333' => 'aox', 'Aqoxy7G00641' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3IZ0NN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4EF6AW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W9P8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79GA3M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C43NQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFCU6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G95YVJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCHK29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LU1UG8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX91RN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGB4B1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8DA0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9H7JI' => 'arhy', 'AT3G09320' => 'ath', 'AT3G60800' => 'ath', 'AT4G00840' => 'ath', 'AT4G22750' => 'ath', 'AT5G04270' => 'ath', 'ATR0090G003' => 'atr', 'ATR0559G349' => 'atr', 'ATR0680G261' => 'atr', 'ATR0810G048' => 'atr', 'Atru.chr12.831' => 'acertr', 'Atru.chr5.303' => 'acertr', 'Atru.chr5.748' => 'acertr', 'Atru.chr8.1999' => 'acertr', 'Atru.chr9.1436' => 'acertr', 'AUR62004211' => 'cqu', 'AUR62004548' => 'cqu', 'AUR62013637' => 'cqu', 'AUR62022662' => 'cqu', 'AUR62025777' => 'cqu', 'AUR62042386' => 'cqu', 'BcaB01g02310' => 'bca', 'BcaB01g06062' => 'bca', 'BcaB02g08975' => 'bca', 'BcaB02g08980' => 'bca', 'BcaC01g04228' => 'bca', 'BcaC01g06830' => 'bca', 'BcaC02g10186' => 'bca', 'BcaC02g12214' => 'bca', 'BcaC04g24101' => 'bca', 'BcaC05g29520' => 'bca', 'BcaC05g29661' => 'bca', 'BcaC06g32130' => 'bca', 'BcaC06g32131' => 'bca', 'BcaC07g40601' => 'bca', 'BcaC07g42641' => 'bca', 'BcaNung01038' => 'bca', 'BcaNung01676' => 'bca', 'BcaNung02480' => 'bca', 'BcaNung07376' => 'bca', 'BolC3t16146H' => 'bol', 'BolC3t16637H' => 'bol', 'BolC4t22257H' => 'bol', 'BolC4t24728H' => 'bol', 'BolC5t34517H' => 'bol', 'BolC7t45703H' => 'bol', 'BolC8t51166H' => 'bol', 'BolC9t53038H' => 'bol', 'BolC9t60000H' => 'bol', 'BraA01t01345Z' => 'bra', 'BraA01t01346Z' => 'bra', 'BraA01t01348Z' => 'bra', 'BraA03t12347Z' => 'bra', 'BraA03t12775Z' => 'bra', 'BraA03t14439Z' => 'bra', 'BraA04t15860Z' => 'bra', 'BraA05t19511Z' => 'bra', 'BraA05t22746Z' => 'bra', 'BraA09t35767Z' => 'bra', 'BraA09t40732Z' => 'bra', 'BraA10t45233Z' => 'bra', 'C03p38720' => 'bna', 'C03p43680' => 'bna', 'C04p06350' => 'bna', 'C04p31800' => 'bna', 'C05p58680' => 'bna', 'C07p52110' => 'bna', 'C08p35760' => 'bna', 'C09p01050' => 'bna', 'C09p72600' => 'bna', 'CAN.G106.2' => 'can', 'CAN.G1482.1' => 'can', 'CAN.G324.12' => 'can', 'CAN.G388.20' => 'can', 'CAN.G412.7' => 'can', 'CAN.G694.32' => 'can', 'CAN.G92.12' => 'can', 'CANSAT11G2353' => 'cansat', 'CANSAT21G1398' => 'cansat', 'CANSAT56G2456' => 'cansat', 'CANSAT56G3031' => 'cansat', 'CANSAT56G4539' => 'cansat', 'CARHR083680' => 'chi', 'CARHR171190' => 'chi', 'CARHR209010' => 'chi', 'CARHR229680' => 'chi', 'CARHR249490' => 'chi', 'Carub.0003s0844' => 'cru', 'Carub.0005s2755' => 'cru', 'Carub.0006s0322' => 'cru', 'Carub.0006s3586' => 'cru', 'Carub.0007s1855' => 'cru', 'Ca_07808_v3' => 'car', 'Ca_09535_v3' => 'car', 'Ca_10548_v3' => 'car', 'Ca_19913_v3' => 'car', 'Ca_19916_v3' => 'car', 'Ca_19975_v3' => 'car', 'CBR_g22876' => 'cbr', 'CBR_g22879' => 'cbr', 'CBR_g38491' => 'cbr', 'CBR_g54185' => 'cbr', 'CBR_g54190' => 'cbr', 'Cc02_g11020' => 'ccan', 'Cc02_g23920' => 'ccan', 'Cc02_g39860' => 'ccan', 'Cc02_g39870' => 'ccan', 'Cc03_g06760' => 'ccan', 'Cc06_g02450' => 'ccan', 'Cc09_g09450' => 'ccan', 'CDE02G1959' => 'cde', 'CDE04G0600' => 'cde', 'CDE07G1996' => 'cde', 'CDE07G2078' => 'cde', 'CDE11G0611' => 'cde', 'Cfa001683' => 'cfa', 'Cfa001734' => 'cfa', 'Cfa001737' => 'cfa', 'Cfa003751' => 'cfa', 'Cfa012019' => 'cfa', 'Cfa017353' => 'cfa', 'Cfa017732' => 'cfa', 'Cfa022464' => 'cfa', 'Ciclev10012400m.g' => 'ccl', 'Ciclev10021242m.g' => 'ccl', 'Ciclev10021302m.g' => 'ccl', 'Ciclev10021463m.g' => 'ccl', 'Ciclev10032359m.g' => 'ccl', 'CiPaw.01G081000' => 'cil', 'CiPaw.01G262500' => 'cil', 'CiPaw.01G269800' => 'cil', 'CiPaw.02G168400' => 'cil', 'CiPaw.05G119500' => 'cil', 'CiPaw.11G147300' => 'cil', 'ClCG01G003630' => 'cla', 'ClCG05G000510' => 'cla', 'ClCG05G002300' => 'cla', 'ClCG08G007650' => 'cla', 'ClCG10G021250' => 'cla', 'COL.COLO4_06218' => 'col', 'COL.COLO4_12538' => 'col', 'COL.COLO4_14775' => 'col', 'COL.COLO4_23875' => 'col', 'Cpa.g.sc141.16' => 'cpa', 'Cpa.g.sc169.16' => 'cpa', 'Cpa.g.sc244.4' => 'cpa', 'Cpa.g.sc244.5' => 'cpa', 'Cpa.g.sc29.87' => 'cpa', 'Cpa.g.sc53.115' => 'cpa', 'Cre03.g207502' => 'cre', 'Cre06.g277000' => 'cre', 'Cre09.g394050' => 'cre', 'CsaV3_3G007680' => 'csa', 'CsaV3_3G009710' => 'csa', 'CsaV3_3G034790' => 'csa', 'CsaV3_5G003750' => 'csa', 'CsaV3_6G036620' => 'csa', 'CSS0002288' => 'camsi', 'CSS0011250' => 'camsi', 'CSS0021619' => 'camsi', 'CSS0046701' => 'camsi', 'DCAR_006420' => 'dca', 'DCAR_006865' => 'dca', 'DCAR_008558' => 'dca', 'DCAR_028754' => 'dca', 'DCAR_028755' => 'dca', 'Dinv31218' => 'din', 'Dinv32371' => 'din', 'Dinv34250' => 'din', 'Dinv37156' => 'din', 'Dinv43704' => 'din', 'Duzib093G1811' => 'dzi', 'Duzib106G1622' => 'dzi', 'Duzib114G0504' => 'dzi', 'Duzib128G0338' => 'dzi', 'Duzib128G1577' => 'dzi', 'Duzib133G0104' => 'dzi', 'Duzib133G1080' => 'dzi', 'Duzib138G0324' => 'dzi', 'Duzib138G0394' => 'dzi', 'Duzib205G0122' => 'dzi', 'Duzib268G1020' => 'dzi', 'Duzib268G1359' => 'dzi', 'ECA232G3929' => 'eca', 'ECA236G2210' => 'eca', 'ECA236G2287' => 'eca', 'ECA240G4568' => 'eca', 'ECA247G0894' => 'eca', 'EL10Ac1g00200' => 'bvu', 'EL10Ac1g00886' => 'bvu', 'EL10As1g23091' => 'bvu', 'EL10As1g23092' => 'bvu', 'Eucgr.A01284' => 'egr', 'Eucgr.A01285' => 'egr', 'Eucgr.D02456' => 'egr', 'Eucgr.E00018' => 'egr', 'Eucgr.E01439' => 'egr', 'Eucgr.G02859' => 'egr', 'FAN01G0168' => 'fan', 'FAN01G0453' => 'fan', 'FAN01G2761' => 'fan', 'FAN02G1239' => 'fan', 'FAN03G0645' => 'fan', 'FAN03G2707' => 'fan', 'FAN03G2978' => 'fan', 'FAN04G0227' => 'fan', 'FAN06G0091' => 'fan', 'FAN06G1418' => 'fan', 'FAN06G1512' => 'fan', 'FAN06G1986' => 'fan', 'FAN06G2905' => 'fan', 'FAN06G4325' => 'fan', 'FAN08G0033' => 'fan', 'FAN09G0642' => 'fan', 'FAN10G1763' => 'fan', 'FAN10G2026' => 'fan', 'FAN10G2513' => 'fan', 'FAN10G3402' => 'fan', 'FAN10G3564' => 'fan', 'FAN10G3987' => 'fan', 'FAN13G1490' => 'fan', 'FAN14G5857' => 'fan', 'FAN18G1188' => 'fan', 'FvH4_5g00750' => 'fve', 'FvH4_6g13410' => 'fve', 'FvH4_7g11740' => 'fve', 'FvH4_7g17410' => 'fve', 'FvH4_7g18860' => 'fve', 'Glyma.01G099100' => 'gma', 'Glyma.01G142300' => 'gma', 'Glyma.03G025500' => 'gma', 'Glyma.03G069700' => 'gma', 'Glyma.03G260000' => 'gma', 'Glyma.09G269800' => 'gma', 'Glyma.10G208700' => 'gma', 'Glyma.18G220400' => 'gma', 'Glyma.20G182000' => 'gma', 'Gohir.A01G221726' => 'ghi', 'Gohir.A07G134600' => 'ghi', 'Gohir.A07G146000' => 'ghi', 'Gohir.A08G173900' => 'ghi', 'Gohir.A09G194900' => 'ghi', 'Gohir.A10G204100' => 'ghi', 'Gohir.A11G080600' => 'ghi', 'Gohir.A11G327500' => 'ghi', 'Gohir.A12G101800' => 'ghi', 'Gohir.D01G211200' => 'ghi', 'Gohir.D07G139200' => 'ghi', 'Gohir.D07G152100' => 'ghi', 'Gohir.D08G192600' => 'ghi', 'Gohir.D09G189200' => 'ghi', 'Gohir.D10G212000' => 'ghi', 'Gohir.D11G085200' => 'ghi', 'Gohir.D11G346400' => 'ghi', 'Gohir.D12G104800' => 'ghi', 'Gorai.001G151300' => 'gra', 'Gorai.001G174100' => 'gra', 'Gorai.002G257000' => 'gra', 'Gorai.004G202600' => 'gra', 'Gorai.007G090900' => 'gra', 'Gorai.007G376700' => 'gra', 'Gorai.008G114100' => 'gra', 'Gorai.011G237900' => 'gra', 'GSVIVG01005450001' => 'vvi', 'GSVIVG01016232001' => 'vvi', 'GSVIVG01026157001' => 'vvi', 'GSVIVG01027419001' => 'vvi', 'GSVIVG01027631001' => 'vvi', 'GSVIVG01034143001' => 'vvi', 'HanXRQChr03g0093921' => 'han', 'HanXRQChr04g0120001' => 'han', 'HanXRQChr04g0122561' => 'han', 'HanXRQChr09g0246851' => 'han', 'HanXRQChr10g0293311' => 'han', 'HanXRQChr13g0425231' => 'han', 'HanXRQChr16g0532571' => 'han', 'Haze_09050' => 'cav', 'Haze_15715' => 'cav', 'Haze_15716' => 'cav', 'Haze_16803' => 'cav', 'Haze_16850' => 'cav', 'Hma1.2p1_0301F.1_g118655' => 'hma', 'Hma1.2p1_0309F.1_g120590' => 'hma', 'Hma1.2p1_0936F.1_g238900' => 'hma', 'Hma1.2p1_3552F.1_g336740' => 'hma', 'HPP92_003520' => 'vpl', 'HPP92_006628' => 'vpl', 'HPP92_006645' => 'vpl', 'HPP92_014669' => 'vpl', 'HPP92_015077' => 'vpl', 'Hund16742' => 'sun', 'Hund17022' => 'sun', 'Lalb_Chr02g0152131' => 'lal', 'Lalb_Chr05g0225371' => 'lal', 'Lalb_Chr07g0189841' => 'lal', 'Lalb_Chr07g0192961' => 'lal', 'Lalb_Chr12g0208221' => 'lal', 'Lalb_Chr13g0291211' => 'lal', 'Lalb_Chr13g0291781' => 'lal', 'Lalb_Chr18g0044651' => 'lal', 'Lalb_Chr21g0313731' => 'lal', 'Lj1g0022533' => 'lja', 'Lj2A18T50' => 'lonja', 'Lj2A92G93' => 'lonja', 'Lj3A965T73' => 'lonja', 'Lj3g0000673' => 'lja', 'Lj3g0002666' => 'lja', 'Lj4g0016985' => 'lja', 'Lj5g0003625' => 'lja', 'Lj7A529G36' => 'lonja', 'Lj9A569T49' => 'lonja', 'Lj9A604T63' => 'lonja', 'Lsat_1_v5_gn_3_132060' => 'lsa', 'Lsat_1_v5_gn_4_68941' => 'lsa', 'Lsat_1_v5_gn_5_95580' => 'lsa', 'Lsat_1_v5_gn_7_161' => 'lsa', 'Lsat_1_v5_gn_7_7041' => 'lsa', 'Lsat_1_v5_gn_9_33481' => 'lsa', 'Lsat_1_v5_gn_9_68260' => 'lsa', 'Manes.01G073100' => 'mes', 'Manes.01G266300' => 'mes', 'Manes.02G033300' => 'mes', 'Manes.05G017900' => 'mes', 'Manes.05G046100' => 'mes', 'Manes.08G080900' => 'mes', 'Manes.10G049400' => 'mes', 'Mapoly0009s0186' => 'mpo', 'Mapoly0036s0118' => 'mpo', 'Mapoly0101s0046' => 'mpo', 'MBI04_g30218_MAGBIO' => 'mbi', 'MBI04_g35564_MAGBIO' => 'mbi', 'MBI12_g34011_MAGBIO' => 'mbi', 'MBI14_g04655_MAGBIO' => 'mbi', 'MCO07G653' => 'mco', 'MCO10G173' => 'mco', 'MD01G1087100' => 'mdo', 'MD01G1104200' => 'mdo', 'MD02G1205100' => 'mdo', 'MD04G1079200' => 'mdo', 'MD04G1131400' => 'mdo', 'MD07G1121600' => 'mdo', 'MD07G1157300' => 'mdo', 'MD07G1171000' => 'mdo', 'MD12G1144500' => 'mdo', 'Medtr1g094610' => 'mtr', 'Medtr4g021795' => 'mtr', 'Medtr4g023760' => 'mtr', 'Medtr7g118050' => 'mtr', 'MELO3C005582.2' => 'cme', 'MELO3C005989.2' => 'cme', 'MELO3C006192.2' => 'cme', 'MELO3C009248.2' => 'cme', 'MELO3C019817.2' => 'cme', 'Migut.B01625' => 'egut', 'Migut.B01915' => 'egut', 'Migut.F01721' => 'egut', 'Migut.J00314' => 'egut', 'MSTRG.20742' => 'ama', 'MSTRG.8134' => 'ama', 'Nitab4.5_0000096g0010' => 'nta', 'Nitab4.5_0000202g0030' => 'nta', 'Nitab4.5_0000216g0370' => 'nta', 'Nitab4.5_0000457g0230' => 'nta', 'Nitab4.5_0001702g0170' => 'nta', 'Nitab4.5_0003607g0010' => 'nta', 'Nitab4.5_0004917g0020' => 'nta', 'Nitab4.5_0007059g0010' => 'nta', 'Nitab4.5_0007184g0010' => 'nta', 'Nitab4.5_0007346g0020' => 'nta', 'Nn1g00410' => 'nnu', 'Nn1g01252' => 'nnu', 'Nn2g11168' => 'nnu', 'Nn2g13403' => 'nnu', 'Nn2g13760' => 'nnu', 'Nn4g26380' => 'nnu', 'Oeu000806.2' => 'oeu', 'Oeu005788.1' => 'oeu', 'Oeu006900.3' => 'oeu', 'Oeu007797.1' => 'oeu', 'Oeu011932.1' => 'oeu', 'Oeu022739.1' => 'oeu', 'Oeu037918.1' => 'oeu', 'Oeu055490.2' => 'oeu', 'Os01g0844400' => 'osa', 'Os02g0819100' => 'osa', 'Os03g0804300' => 'osa', 'Os05g0458000' => 'osa', 'Os07g0467800' => 'osa', 'Os12g0602200' => 'osa', 'Peaxi162Scf00013g03444' => 'pax', 'Peaxi162Scf00094g01120' => 'pax', 'Peaxi162Scf00191g01211' => 'pax', 'Peaxi162Scf00238g01110' => 'pax', 'Peaxi162Scf00330g00719' => 'pax', 'Peaxi162Scf00627g00018' => 'pax', 'PGR031G2686' => 'pgr', 'PGR042G0809' => 'pgr', 'PGR142G0193' => 'pgr', 'PGSC0003DMG400011066' => 'stu', 'PGSC0003DMG400012041' => 'stu', 'PGSC0003DMG400013678' => 'stu', 'PGSC0003DMG400023477' => 'stu', 'PGSC0003DMG400025956' => 'stu', 'PGSC0003DMG401019151' => 'stu', 'Phvul.006G116400' => 'pvu', 'Phvul.007G097300' => 'pvu', 'Phvul.010G015000' => 'pvu', 'Phvul.010G083900' => 'pvu', 'Potri.001G117100' => 'ptr', 'Potri.002G147300' => 'ptr', 'Potri.003G115600' => 'ptr', 'Potri.006G087400' => 'ptr', 'Potri.010G226100' => 'ptr', 'Potri.014G069200' => 'ptr', 'Potri.014G104000' => 'ptr', 'Potri.016G100200' => 'ptr', 'Pp3c10_20450' => 'ppa', 'Pp3c1_42400' => 'ppa', 'Pp3c3_24390' => 'ppa', 'Pp3c3_2860' => 'ppa', 'PRCOL_00003193' => 'pco', 'Prupe.2G144500' => 'ppe', 'Prupe.2G195700' => 'ppe', 'Prupe.2G209800' => 'ppe', 'Prupe.5G080000' => 'ppe', 'Prupe.6G257900' => 'ppe', 'Psat3g001160' => 'psa', 'Psat6g181880' => 'psa', 'Psat7g233720' => 'psa', 'PSO063G7587' => 'pso', 'PSO339G2145' => 'pso', 'PSO339G3369' => 'pso', 'PSO478G2747' => 'pso', 'PSO513G0140' => 'pso', 'PSO782G1614' => 'pso', 'PSO782G4889' => 'pso', 'PSO782G5485' => 'pso', 'PSO801G0241' => 'pso', 'QL07p048854' => 'qlo', 'QL08p046745' => 'qlo', 'QL08p052606' => 'qlo', 'QL08p053414' => 'qlo', 'QL08p054868' => 'qlo', 'RcHm_v2.0_Chr1g0350251' => 'rch', 'RcHm_v2.0_Chr1g0360851' => 'rch', 'RcHm_v2.0_Chr1g0362791' => 'rch', 'RcHm_v2.0_Chr3g0466281' => 'rch', 'RcHm_v2.0_Chr7g0201481' => 'rch', 'Rhsim01G0148600' => 'rsi', 'Rhsim05G0194400' => 'rsi', 'Rhsim07G0000700' => 'rsi', 'Rhsim07G0000800' => 'rsi', 'Rhsim07G0027900' => 'rsi', 'Rhsim09G0149500' => 'rsi', 'RhsimUnG0186900' => 'rsi', 'Sabra01G0089900' => 'sbr', 'Sabra02G0114700' => 'sbr', 'Sabra02G0116300' => 'sbr', 'Sabra03G0080100' => 'sbr', 'Sabra08G0024300' => 'sbr', 'Sabra10G0174300' => 'sbr', 'Sabra14G0048900' => 'sbr', 'Sabra14G0076500' => 'sbr', 'SalBow5G2513' => 'sbo', 'Sc01g0002300' => 'sci', 'Sc01g0004450' => 'sci', 'Sc06g0001680' => 'sci', 'Sc23g0003580' => 'sci', 'Sed0000913' => 'sed', 'Sed0001655' => 'sed', 'Sed0007745' => 'sed', 'Sed0010951' => 'sed', 'Sed0017599' => 'sed', 'Sed0021405' => 'sed', 'Sed0022810' => 'sed', 'SEGI_07099' => 'sgi', 'SEGI_11931' => 'sgi', 'SEGI_13187' => 'sgi', 'SEGI_29958' => 'sgi', 'SEGI_36351' => 'sgi', 'SGA_v2.0_scaffold126G33770' => 'sas', 'SGA_v2.0_scaffold153G37003' => 'sas', 'SGA_v2.0_scaffold2G01359' => 'sas', 'SGA_v2.0_scaffold5G03064' => 'sas', 'SGA_v2.0_scaffold95G28903' => 'sas', 'SHI12701' => 'shi', 'SHI26410' => 'shi', 'SHI38997' => 'shi', 'SHI53759' => 'shi', 'SHI53886' => 'shi', 'SHI54714' => 'shi', 'SMO011G0041' => 'smo', 'SMO146G0251' => 'smo', 'SMO160G0004' => 'smo', 'SMO174G0057' => 'smo', 'SMO244G0089' => 'smo', 'SMO296G0011' => 'smo', 'Solyc01g091280.3' => 'sly', 'Solyc05g047610.3' => 'sly', 'Solyc05g047640.3' => 'sly', 'Solyc05g055630.3' => 'sly', 'Solyc10g018160.2' => 'sly', 'Solyc10g084820.2' => 'sly', 'Solyc10g086565.2' => 'sly', 'Sopen01g037030' => 'spe', 'Sopen05g027920' => 'spe', 'Sopen05g034070' => 'spe', 'Sopen10g007260' => 'spe', 'Sopen10g034260' => 'spe', 'Sopen10g035950' => 'spe', 'Sp3g07710' => 'spa', 'Sp4g27420' => 'spa', 'Sp5g02450' => 'spa', 'Sp6g01280' => 'spa', 'Sp6g38480' => 'spa', 'Sp7g20780' => 'spa', 'TAR374G1413' => 'tar', 'TAR623G1777' => 'tar', 'TAR629G2370' => 'tar', 'TAR633G1759' => 'tar', 'TAR636G3387' => 'tar', 'THA.LOC104802447' => 'tha', 'THA.LOC104813916' => 'tha', 'THA.LOC104816423' => 'tha', 'THA.LOC104817246' => 'tha', 'THA.LOC104825895' => 'tha', 'Thecc.01G335200' => 'tca', 'Thecc.01G377400' => 'tca', 'Thecc.03G262200' => 'tca', 'Thecc.05G036800' => 'tca', 'Thecc.10G080500' => 'tca', 'Thecc.10G080800' => 'tca', 'Thhalv10001560m.g' => 'esa', 'Thhalv10006120m.g' => 'esa', 'Thhalv10014375m.g' => 'esa', 'Thhalv10021264m.g' => 'esa', 'Thhalv10028856m.g' => 'esa', 'TPR.G1914' => 'tpr', 'TPR.G4757' => 'tpr', 'TPR.G5595' => 'tpr', 'TWI14G0952' => 'twi', 'TWI14G1307' => 'twi', 'TWI38G2143' => 'twi', 'TWI59G0826' => 'twi', 'TWI77G0527' => 'twi', 'TWI81G0150' => 'twi', 'unitig_21.g21018' => 'ugi', 'unitig_26.g9725' => 'ugi', 'unitig_744.g24653' => 'ugi', 'unitig_749.g13778' => 'ugi', 'unitig_899.g15035' => 'ugi', 'vmacro04296' => 'vma', 'vmacro04852' => 'vma', 'vmacro13404' => 'vma', 'vmacro20169' => 'vma', 'vmacro21014' => 'vma', 'VMungo0331G0237' => 'vmu', 'VMungo0331G0706' => 'vmu', 'VMungo0331G1361' => 'vmu', 'VMungo0331G1489' => 'vmu', 'VMungo0540G1037' => 'vmu', 'VMungo0720G2487' => 'vmu', 'VMungo0720G2721' => 'vmu', 'Zm00001eb086860' => 'zma', 'Zm00001eb104760' => 'zma', 'Zm00001eb148220' => 'zma', 'Zm00001eb259030' => 'zma', 'Zm00001eb289590' => 'zma', 'Zm00001eb420150' => 'zma' ) $gf_id = 'HOM05D000968' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000968' ) $data_identifier = 'HOM05D000968' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 19, 'bol' => (int) 9, 'bra' => (int) 12, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 5, 'ccan' => (int) 7, 'cde' => (int) 5, 'cfa' => (int) 8, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 4, 'dca' => (int) 5, 'din' => (int) 5, 'dzi' => (int) 12, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 25, 'fve' => (int) 5, 'gma' => (int) 9, 'ghi' => (int) 18, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 7, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 5, 'sun' => (int) 2, 'lal' => (int) 9, 'lja' => (int) 5, 'lonja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 9, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 2, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 3, 'stu' => (int) 6, 'pvu' => (int) 4, 'ptr' => (int) 8, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 3, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 1, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 5, 'sas' => (int) 5, 'shi' => (int) 6, 'smo' => (int) 6, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 3, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420150' $species_info = array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ) $local_species = 'sed' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000968', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p31690' => 'bna', 'A03p36040' => 'bna', 'A03p53730' => 'bna', 'A04p01410' => 'bna', 'A05p05420' => 'bna', 'A05p39630' => 'bna', 'A05p39640' => 'bna', 'A09p00970' => 'bna', 'A09p53060' => 'bna', 'A10p31890' => 'bna', 'Aa31LG10G15040' => 'aar', 'Aa31LG1G21090' => 'aar', 'Aa31LG1G26900' => 'aar', 'Aa31LG3G1820' => 'aar', 'Aa31LG5G1100' => 'aar', 'Aa31LG6G4740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2265' => 'aag', 'Actinidia07998' => 'ach', 'Actinidia11266' => 'ach', 'Actinidia12682' => 'ach', 'Actinidia26479' => 'ach', 'Actinidia31406' => 'ach', 'Actinidia32437' => 'ach', 'Actinidia38862' => 'ach', 'Ah.05g174230' => 'amhyb', 'Ah.05g179070' => 'amhyb', 'Ah.05g179090' => 'amhyb', 'Ah.12g059950' => 'amhyb', 'AL3G20480' => 'aly', 'AL4G44520' => 'aly', 'AL5G43110' => 'aly', 'AL6G13890' => 'aly', 'AL6G52620' => 'aly', 'AL7G30830' => 'aly', 'Aqoxy1G00899' => 'aox', 'Aqoxy5G04333' => 'aox', 'Aqoxy7G00641' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3IZ0NN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4EF6AW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W9P8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79GA3M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C43NQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFCU6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G95YVJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCHK29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LU1UG8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX91RN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGB4B1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8DA0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9H7JI' => 'arhy', 'AT3G09320' => 'ath', 'AT3G60800' => 'ath', 'AT4G00840' => 'ath', 'AT4G22750' => 'ath', 'AT5G04270' => 'ath', 'ATR0090G003' => 'atr', 'ATR0559G349' => 'atr', 'ATR0680G261' => 'atr', 'ATR0810G048' => 'atr', 'Atru.chr12.831' => 'acertr', 'Atru.chr5.303' => 'acertr', 'Atru.chr5.748' => 'acertr', 'Atru.chr8.1999' => 'acertr', 'Atru.chr9.1436' => 'acertr', 'AUR62004211' => 'cqu', 'AUR62004548' => 'cqu', 'AUR62013637' => 'cqu', 'AUR62022662' => 'cqu', 'AUR62025777' => 'cqu', 'AUR62042386' => 'cqu', 'BcaB01g02310' => 'bca', 'BcaB01g06062' => 'bca', 'BcaB02g08975' => 'bca', 'BcaB02g08980' => 'bca', 'BcaC01g04228' => 'bca', 'BcaC01g06830' => 'bca', 'BcaC02g10186' => 'bca', 'BcaC02g12214' => 'bca', 'BcaC04g24101' => 'bca', 'BcaC05g29520' => 'bca', 'BcaC05g29661' => 'bca', 'BcaC06g32130' => 'bca', 'BcaC06g32131' => 'bca', 'BcaC07g40601' => 'bca', 'BcaC07g42641' => 'bca', 'BcaNung01038' => 'bca', 'BcaNung01676' => 'bca', 'BcaNung02480' => 'bca', 'BcaNung07376' => 'bca', 'BolC3t16146H' => 'bol', 'BolC3t16637H' => 'bol', 'BolC4t22257H' => 'bol', 'BolC4t24728H' => 'bol', 'BolC5t34517H' => 'bol', 'BolC7t45703H' => 'bol', 'BolC8t51166H' => 'bol', 'BolC9t53038H' => 'bol', 'BolC9t60000H' => 'bol', 'BraA01t01345Z' => 'bra', 'BraA01t01346Z' => 'bra', 'BraA01t01348Z' => 'bra', 'BraA03t12347Z' => 'bra', 'BraA03t12775Z' => 'bra', 'BraA03t14439Z' => 'bra', 'BraA04t15860Z' => 'bra', 'BraA05t19511Z' => 'bra', 'BraA05t22746Z' => 'bra', 'BraA09t35767Z' => 'bra', 'BraA09t40732Z' => 'bra', 'BraA10t45233Z' => 'bra', 'C03p38720' => 'bna', 'C03p43680' => 'bna', 'C04p06350' => 'bna', 'C04p31800' => 'bna', 'C05p58680' => 'bna', 'C07p52110' => 'bna', 'C08p35760' => 'bna', 'C09p01050' => 'bna', 'C09p72600' => 'bna', 'CAN.G106.2' => 'can', 'CAN.G1482.1' => 'can', 'CAN.G324.12' => 'can', 'CAN.G388.20' => 'can', 'CAN.G412.7' => 'can', 'CAN.G694.32' => 'can', 'CAN.G92.12' => 'can', 'CANSAT11G2353' => 'cansat', 'CANSAT21G1398' => 'cansat', 'CANSAT56G2456' => 'cansat', 'CANSAT56G3031' => 'cansat', 'CANSAT56G4539' => 'cansat', 'CARHR083680' => 'chi', 'CARHR171190' => 'chi', 'CARHR209010' => 'chi', 'CARHR229680' => 'chi', 'CARHR249490' => 'chi', 'Carub.0003s0844' => 'cru', 'Carub.0005s2755' => 'cru', 'Carub.0006s0322' => 'cru', 'Carub.0006s3586' => 'cru', 'Carub.0007s1855' => 'cru', 'Ca_07808_v3' => 'car', 'Ca_09535_v3' => 'car', 'Ca_10548_v3' => 'car', 'Ca_19913_v3' => 'car', 'Ca_19916_v3' => 'car', 'Ca_19975_v3' => 'car', 'CBR_g22876' => 'cbr', 'CBR_g22879' => 'cbr', 'CBR_g38491' => 'cbr', 'CBR_g54185' => 'cbr', 'CBR_g54190' => 'cbr', 'Cc02_g11020' => 'ccan', 'Cc02_g23920' => 'ccan', 'Cc02_g39860' => 'ccan', 'Cc02_g39870' => 'ccan', 'Cc03_g06760' => 'ccan', 'Cc06_g02450' => 'ccan', 'Cc09_g09450' => 'ccan', 'CDE02G1959' => 'cde', 'CDE04G0600' => 'cde', 'CDE07G1996' => 'cde', 'CDE07G2078' => 'cde', 'CDE11G0611' => 'cde', 'Cfa001683' => 'cfa', 'Cfa001734' => 'cfa', 'Cfa001737' => 'cfa', 'Cfa003751' => 'cfa', 'Cfa012019' => 'cfa', 'Cfa017353' => 'cfa', 'Cfa017732' => 'cfa', 'Cfa022464' => 'cfa', 'Ciclev10012400m.g' => 'ccl', 'Ciclev10021242m.g' => 'ccl', 'Ciclev10021302m.g' => 'ccl', 'Ciclev10021463m.g' => 'ccl', 'Ciclev10032359m.g' => 'ccl', 'CiPaw.01G081000' => 'cil', 'CiPaw.01G262500' => 'cil', 'CiPaw.01G269800' => 'cil', 'CiPaw.02G168400' => 'cil', 'CiPaw.05G119500' => 'cil', 'CiPaw.11G147300' => 'cil', 'ClCG01G003630' => 'cla', 'ClCG05G000510' => 'cla', 'ClCG05G002300' => 'cla', 'ClCG08G007650' => 'cla', 'ClCG10G021250' => 'cla', 'COL.COLO4_06218' => 'col', 'COL.COLO4_12538' => 'col', 'COL.COLO4_14775' => 'col', 'COL.COLO4_23875' => 'col', 'Cpa.g.sc141.16' => 'cpa', 'Cpa.g.sc169.16' => 'cpa', 'Cpa.g.sc244.4' => 'cpa', 'Cpa.g.sc244.5' => 'cpa', 'Cpa.g.sc29.87' => 'cpa', 'Cpa.g.sc53.115' => 'cpa', 'Cre03.g207502' => 'cre', 'Cre06.g277000' => 'cre', 'Cre09.g394050' => 'cre', 'CsaV3_3G007680' => 'csa', 'CsaV3_3G009710' => 'csa', 'CsaV3_3G034790' => 'csa', 'CsaV3_5G003750' => 'csa', 'CsaV3_6G036620' => 'csa', 'CSS0002288' => 'camsi', 'CSS0011250' => 'camsi', 'CSS0021619' => 'camsi', 'CSS0046701' => 'camsi', 'DCAR_006420' => 'dca', 'DCAR_006865' => 'dca', 'DCAR_008558' => 'dca', 'DCAR_028754' => 'dca', 'DCAR_028755' => 'dca', 'Dinv31218' => 'din', 'Dinv32371' => 'din', 'Dinv34250' => 'din', 'Dinv37156' => 'din', 'Dinv43704' => 'din', 'Duzib093G1811' => 'dzi', 'Duzib106G1622' => 'dzi', 'Duzib114G0504' => 'dzi', 'Duzib128G0338' => 'dzi', 'Duzib128G1577' => 'dzi', 'Duzib133G0104' => 'dzi', 'Duzib133G1080' => 'dzi', 'Duzib138G0324' => 'dzi', 'Duzib138G0394' => 'dzi', 'Duzib205G0122' => 'dzi', 'Duzib268G1020' => 'dzi', 'Duzib268G1359' => 'dzi', 'ECA232G3929' => 'eca', 'ECA236G2210' => 'eca', 'ECA236G2287' => 'eca', 'ECA240G4568' => 'eca', 'ECA247G0894' => 'eca', 'EL10Ac1g00200' => 'bvu', 'EL10Ac1g00886' => 'bvu', 'EL10As1g23091' => 'bvu', 'EL10As1g23092' => 'bvu', 'Eucgr.A01284' => 'egr', 'Eucgr.A01285' => 'egr', 'Eucgr.D02456' => 'egr', 'Eucgr.E00018' => 'egr', 'Eucgr.E01439' => 'egr', 'Eucgr.G02859' => 'egr', 'FAN01G0168' => 'fan', 'FAN01G0453' => 'fan', 'FAN01G2761' => 'fan', 'FAN02G1239' => 'fan', 'FAN03G0645' => 'fan', 'FAN03G2707' => 'fan', 'FAN03G2978' => 'fan', 'FAN04G0227' => 'fan', 'FAN06G0091' => 'fan', 'FAN06G1418' => 'fan', 'FAN06G1512' => 'fan', 'FAN06G1986' => 'fan', 'FAN06G2905' => 'fan', 'FAN06G4325' => 'fan', 'FAN08G0033' => 'fan', 'FAN09G0642' => 'fan', 'FAN10G1763' => 'fan', 'FAN10G2026' => 'fan', 'FAN10G2513' => 'fan', 'FAN10G3402' => 'fan', 'FAN10G3564' => 'fan', 'FAN10G3987' => 'fan', 'FAN13G1490' => 'fan', 'FAN14G5857' => 'fan', 'FAN18G1188' => 'fan', 'FvH4_5g00750' => 'fve', 'FvH4_6g13410' => 'fve', 'FvH4_7g11740' => 'fve', 'FvH4_7g17410' => 'fve', 'FvH4_7g18860' => 'fve', 'Glyma.01G099100' => 'gma', 'Glyma.01G142300' => 'gma', 'Glyma.03G025500' => 'gma', 'Glyma.03G069700' => 'gma', 'Glyma.03G260000' => 'gma', 'Glyma.09G269800' => 'gma', 'Glyma.10G208700' => 'gma', 'Glyma.18G220400' => 'gma', 'Glyma.20G182000' => 'gma', 'Gohir.A01G221726' => 'ghi', 'Gohir.A07G134600' => 'ghi', 'Gohir.A07G146000' => 'ghi', 'Gohir.A08G173900' => 'ghi', 'Gohir.A09G194900' => 'ghi', 'Gohir.A10G204100' => 'ghi', 'Gohir.A11G080600' => 'ghi', 'Gohir.A11G327500' => 'ghi', 'Gohir.A12G101800' => 'ghi', 'Gohir.D01G211200' => 'ghi', 'Gohir.D07G139200' => 'ghi', 'Gohir.D07G152100' => 'ghi', 'Gohir.D08G192600' => 'ghi', 'Gohir.D09G189200' => 'ghi', 'Gohir.D10G212000' => 'ghi', 'Gohir.D11G085200' => 'ghi', 'Gohir.D11G346400' => 'ghi', 'Gohir.D12G104800' => 'ghi', 'Gorai.001G151300' => 'gra', 'Gorai.001G174100' => 'gra', 'Gorai.002G257000' => 'gra', 'Gorai.004G202600' => 'gra', 'Gorai.007G090900' => 'gra', 'Gorai.007G376700' => 'gra', 'Gorai.008G114100' => 'gra', 'Gorai.011G237900' => 'gra', 'GSVIVG01005450001' => 'vvi', 'GSVIVG01016232001' => 'vvi', 'GSVIVG01026157001' => 'vvi', 'GSVIVG01027419001' => 'vvi', 'GSVIVG01027631001' => 'vvi', 'GSVIVG01034143001' => 'vvi', 'HanXRQChr03g0093921' => 'han', 'HanXRQChr04g0120001' => 'han', 'HanXRQChr04g0122561' => 'han', 'HanXRQChr09g0246851' => 'han', 'HanXRQChr10g0293311' => 'han', 'HanXRQChr13g0425231' => 'han', 'HanXRQChr16g0532571' => 'han', 'Haze_09050' => 'cav', 'Haze_15715' => 'cav', 'Haze_15716' => 'cav', 'Haze_16803' => 'cav', 'Haze_16850' => 'cav', 'Hma1.2p1_0301F.1_g118655' => 'hma', 'Hma1.2p1_0309F.1_g120590' => 'hma', 'Hma1.2p1_0936F.1_g238900' => 'hma', 'Hma1.2p1_3552F.1_g336740' => 'hma', 'HPP92_003520' => 'vpl', 'HPP92_006628' => 'vpl', 'HPP92_006645' => 'vpl', 'HPP92_014669' => 'vpl', 'HPP92_015077' => 'vpl', 'Hund16742' => 'sun', 'Hund17022' => 'sun', 'Lalb_Chr02g0152131' => 'lal', 'Lalb_Chr05g0225371' => 'lal', 'Lalb_Chr07g0189841' => 'lal', 'Lalb_Chr07g0192961' => 'lal', 'Lalb_Chr12g0208221' => 'lal', 'Lalb_Chr13g0291211' => 'lal', 'Lalb_Chr13g0291781' => 'lal', 'Lalb_Chr18g0044651' => 'lal', 'Lalb_Chr21g0313731' => 'lal', 'Lj1g0022533' => 'lja', 'Lj2A18T50' => 'lonja', 'Lj2A92G93' => 'lonja', 'Lj3A965T73' => 'lonja', 'Lj3g0000673' => 'lja', 'Lj3g0002666' => 'lja', 'Lj4g0016985' => 'lja', 'Lj5g0003625' => 'lja', 'Lj7A529G36' => 'lonja', 'Lj9A569T49' => 'lonja', 'Lj9A604T63' => 'lonja', 'Lsat_1_v5_gn_3_132060' => 'lsa', 'Lsat_1_v5_gn_4_68941' => 'lsa', 'Lsat_1_v5_gn_5_95580' => 'lsa', 'Lsat_1_v5_gn_7_161' => 'lsa', 'Lsat_1_v5_gn_7_7041' => 'lsa', 'Lsat_1_v5_gn_9_33481' => 'lsa', 'Lsat_1_v5_gn_9_68260' => 'lsa', 'Manes.01G073100' => 'mes', 'Manes.01G266300' => 'mes', 'Manes.02G033300' => 'mes', 'Manes.05G017900' => 'mes', 'Manes.05G046100' => 'mes', 'Manes.08G080900' => 'mes', 'Manes.10G049400' => 'mes', 'Mapoly0009s0186' => 'mpo', 'Mapoly0036s0118' => 'mpo', 'Mapoly0101s0046' => 'mpo', 'MBI04_g30218_MAGBIO' => 'mbi', 'MBI04_g35564_MAGBIO' => 'mbi', 'MBI12_g34011_MAGBIO' => 'mbi', 'MBI14_g04655_MAGBIO' => 'mbi', 'MCO07G653' => 'mco', 'MCO10G173' => 'mco', 'MD01G1087100' => 'mdo', 'MD01G1104200' => 'mdo', 'MD02G1205100' => 'mdo', 'MD04G1079200' => 'mdo', 'MD04G1131400' => 'mdo', 'MD07G1121600' => 'mdo', 'MD07G1157300' => 'mdo', 'MD07G1171000' => 'mdo', 'MD12G1144500' => 'mdo', 'Medtr1g094610' => 'mtr', 'Medtr4g021795' => 'mtr', 'Medtr4g023760' => 'mtr', 'Medtr7g118050' => 'mtr', 'MELO3C005582.2' => 'cme', 'MELO3C005989.2' => 'cme', 'MELO3C006192.2' => 'cme', 'MELO3C009248.2' => 'cme', 'MELO3C019817.2' => 'cme', 'Migut.B01625' => 'egut', 'Migut.B01915' => 'egut', 'Migut.F01721' => 'egut', 'Migut.J00314' => 'egut', 'MSTRG.20742' => 'ama', 'MSTRG.8134' => 'ama', 'Nitab4.5_0000096g0010' => 'nta', 'Nitab4.5_0000202g0030' => 'nta', 'Nitab4.5_0000216g0370' => 'nta', 'Nitab4.5_0000457g0230' => 'nta', 'Nitab4.5_0001702g0170' => 'nta', 'Nitab4.5_0003607g0010' => 'nta', 'Nitab4.5_0004917g0020' => 'nta', 'Nitab4.5_0007059g0010' => 'nta', 'Nitab4.5_0007184g0010' => 'nta', 'Nitab4.5_0007346g0020' => 'nta', 'Nn1g00410' => 'nnu', 'Nn1g01252' => 'nnu', 'Nn2g11168' => 'nnu', 'Nn2g13403' => 'nnu', 'Nn2g13760' => 'nnu', 'Nn4g26380' => 'nnu', 'Oeu000806.2' => 'oeu', 'Oeu005788.1' => 'oeu', 'Oeu006900.3' => 'oeu', 'Oeu007797.1' => 'oeu', 'Oeu011932.1' => 'oeu', 'Oeu022739.1' => 'oeu', 'Oeu037918.1' => 'oeu', 'Oeu055490.2' => 'oeu', 'Os01g0844400' => 'osa', 'Os02g0819100' => 'osa', 'Os03g0804300' => 'osa', 'Os05g0458000' => 'osa', 'Os07g0467800' => 'osa', 'Os12g0602200' => 'osa', 'Peaxi162Scf00013g03444' => 'pax', 'Peaxi162Scf00094g01120' => 'pax', 'Peaxi162Scf00191g01211' => 'pax', 'Peaxi162Scf00238g01110' => 'pax', 'Peaxi162Scf00330g00719' => 'pax', 'Peaxi162Scf00627g00018' => 'pax', 'PGR031G2686' => 'pgr', 'PGR042G0809' => 'pgr', 'PGR142G0193' => 'pgr', 'PGSC0003DMG400011066' => 'stu', 'PGSC0003DMG400012041' => 'stu', 'PGSC0003DMG400013678' => 'stu', 'PGSC0003DMG400023477' => 'stu', 'PGSC0003DMG400025956' => 'stu', 'PGSC0003DMG401019151' => 'stu', 'Phvul.006G116400' => 'pvu', 'Phvul.007G097300' => 'pvu', 'Phvul.010G015000' => 'pvu', 'Phvul.010G083900' => 'pvu', 'Potri.001G117100' => 'ptr', 'Potri.002G147300' => 'ptr', 'Potri.003G115600' => 'ptr', 'Potri.006G087400' => 'ptr', 'Potri.010G226100' => 'ptr', 'Potri.014G069200' => 'ptr', 'Potri.014G104000' => 'ptr', 'Potri.016G100200' => 'ptr', 'Pp3c10_20450' => 'ppa', 'Pp3c1_42400' => 'ppa', 'Pp3c3_24390' => 'ppa', 'Pp3c3_2860' => 'ppa', 'PRCOL_00003193' => 'pco', 'Prupe.2G144500' => 'ppe', 'Prupe.2G195700' => 'ppe', 'Prupe.2G209800' => 'ppe', 'Prupe.5G080000' => 'ppe', 'Prupe.6G257900' => 'ppe', 'Psat3g001160' => 'psa', 'Psat6g181880' => 'psa', 'Psat7g233720' => 'psa', 'PSO063G7587' => 'pso', 'PSO339G2145' => 'pso', 'PSO339G3369' => 'pso', 'PSO478G2747' => 'pso', 'PSO513G0140' => 'pso', 'PSO782G1614' => 'pso', 'PSO782G4889' => 'pso', 'PSO782G5485' => 'pso', 'PSO801G0241' => 'pso', 'QL07p048854' => 'qlo', 'QL08p046745' => 'qlo', 'QL08p052606' => 'qlo', 'QL08p053414' => 'qlo', 'QL08p054868' => 'qlo', 'RcHm_v2.0_Chr1g0350251' => 'rch', 'RcHm_v2.0_Chr1g0360851' => 'rch', 'RcHm_v2.0_Chr1g0362791' => 'rch', 'RcHm_v2.0_Chr3g0466281' => 'rch', 'RcHm_v2.0_Chr7g0201481' => 'rch', 'Rhsim01G0148600' => 'rsi', 'Rhsim05G0194400' => 'rsi', 'Rhsim07G0000700' => 'rsi', 'Rhsim07G0000800' => 'rsi', 'Rhsim07G0027900' => 'rsi', 'Rhsim09G0149500' => 'rsi', 'RhsimUnG0186900' => 'rsi', 'Sabra01G0089900' => 'sbr', 'Sabra02G0114700' => 'sbr', 'Sabra02G0116300' => 'sbr', 'Sabra03G0080100' => 'sbr', 'Sabra08G0024300' => 'sbr', 'Sabra10G0174300' => 'sbr', 'Sabra14G0048900' => 'sbr', 'Sabra14G0076500' => 'sbr', 'SalBow5G2513' => 'sbo', 'Sc01g0002300' => 'sci', 'Sc01g0004450' => 'sci', 'Sc06g0001680' => 'sci', 'Sc23g0003580' => 'sci', 'Sed0000913' => 'sed', 'Sed0001655' => 'sed', 'Sed0007745' => 'sed', 'Sed0010951' => 'sed', 'Sed0017599' => 'sed', 'Sed0021405' => 'sed', 'Sed0022810' => 'sed', 'SEGI_07099' => 'sgi', 'SEGI_11931' => 'sgi', 'SEGI_13187' => 'sgi', 'SEGI_29958' => 'sgi', 'SEGI_36351' => 'sgi', 'SGA_v2.0_scaffold126G33770' => 'sas', 'SGA_v2.0_scaffold153G37003' => 'sas', 'SGA_v2.0_scaffold2G01359' => 'sas', 'SGA_v2.0_scaffold5G03064' => 'sas', 'SGA_v2.0_scaffold95G28903' => 'sas', 'SHI12701' => 'shi', 'SHI26410' => 'shi', 'SHI38997' => 'shi', 'SHI53759' => 'shi', 'SHI53886' => 'shi', 'SHI54714' => 'shi', 'SMO011G0041' => 'smo', 'SMO146G0251' => 'smo', 'SMO160G0004' => 'smo', 'SMO174G0057' => 'smo', 'SMO244G0089' => 'smo', 'SMO296G0011' => 'smo', 'Solyc01g091280.3' => 'sly', 'Solyc05g047610.3' => 'sly', 'Solyc05g047640.3' => 'sly', 'Solyc05g055630.3' => 'sly', 'Solyc10g018160.2' => 'sly', 'Solyc10g084820.2' => 'sly', 'Solyc10g086565.2' => 'sly', 'Sopen01g037030' => 'spe', 'Sopen05g027920' => 'spe', 'Sopen05g034070' => 'spe', 'Sopen10g007260' => 'spe', 'Sopen10g034260' => 'spe', 'Sopen10g035950' => 'spe', 'Sp3g07710' => 'spa', 'Sp4g27420' => 'spa', 'Sp5g02450' => 'spa', 'Sp6g01280' => 'spa', 'Sp6g38480' => 'spa', 'Sp7g20780' => 'spa', 'TAR374G1413' => 'tar', 'TAR623G1777' => 'tar', 'TAR629G2370' => 'tar', 'TAR633G1759' => 'tar', 'TAR636G3387' => 'tar', 'THA.LOC104802447' => 'tha', 'THA.LOC104813916' => 'tha', 'THA.LOC104816423' => 'tha', 'THA.LOC104817246' => 'tha', 'THA.LOC104825895' => 'tha', 'Thecc.01G335200' => 'tca', 'Thecc.01G377400' => 'tca', 'Thecc.03G262200' => 'tca', 'Thecc.05G036800' => 'tca', 'Thecc.10G080500' => 'tca', 'Thecc.10G080800' => 'tca', 'Thhalv10001560m.g' => 'esa', 'Thhalv10006120m.g' => 'esa', 'Thhalv10014375m.g' => 'esa', 'Thhalv10021264m.g' => 'esa', 'Thhalv10028856m.g' => 'esa', 'TPR.G1914' => 'tpr', 'TPR.G4757' => 'tpr', 'TPR.G5595' => 'tpr', 'TWI14G0952' => 'twi', 'TWI14G1307' => 'twi', 'TWI38G2143' => 'twi', 'TWI59G0826' => 'twi', 'TWI77G0527' => 'twi', 'TWI81G0150' => 'twi', 'unitig_21.g21018' => 'ugi', 'unitig_26.g9725' => 'ugi', 'unitig_744.g24653' => 'ugi', 'unitig_749.g13778' => 'ugi', 'unitig_899.g15035' => 'ugi', 'vmacro04296' => 'vma', 'vmacro04852' => 'vma', 'vmacro13404' => 'vma', 'vmacro20169' => 'vma', 'vmacro21014' => 'vma', 'VMungo0331G0237' => 'vmu', 'VMungo0331G0706' => 'vmu', 'VMungo0331G1361' => 'vmu', 'VMungo0331G1489' => 'vmu', 'VMungo0540G1037' => 'vmu', 'VMungo0720G2487' => 'vmu', 'VMungo0720G2721' => 'vmu', 'Zm00001eb086860' => 'zma', 'Zm00001eb104760' => 'zma', 'Zm00001eb148220' => 'zma', 'Zm00001eb259030' => 'zma', 'Zm00001eb289590' => 'zma', 'Zm00001eb420150' => 'zma' ), 'gf_id' => 'HOM05D000968', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000968' ), 'data_identifier' => 'HOM05D000968', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000968', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p31690' => 'bna', 'A03p36040' => 'bna', 'A03p53730' => 'bna', 'A04p01410' => 'bna', 'A05p05420' => 'bna', 'A05p39630' => 'bna', 'A05p39640' => 'bna', 'A09p00970' => 'bna', 'A09p53060' => 'bna', 'A10p31890' => 'bna', 'Aa31LG10G15040' => 'aar', 'Aa31LG1G21090' => 'aar', 'Aa31LG1G26900' => 'aar', 'Aa31LG3G1820' => 'aar', 'Aa31LG5G1100' => 'aar', 'Aa31LG6G4740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2265' => 'aag', 'Actinidia07998' => 'ach', 'Actinidia11266' => 'ach', 'Actinidia12682' => 'ach', 'Actinidia26479' => 'ach', 'Actinidia31406' => 'ach', 'Actinidia32437' => 'ach', 'Actinidia38862' => 'ach', 'Ah.05g174230' => 'amhyb', 'Ah.05g179070' => 'amhyb', 'Ah.05g179090' => 'amhyb', 'Ah.12g059950' => 'amhyb', 'AL3G20480' => 'aly', 'AL4G44520' => 'aly', 'AL5G43110' => 'aly', 'AL6G13890' => 'aly', 'AL6G52620' => 'aly', 'AL7G30830' => 'aly', 'Aqoxy1G00899' => 'aox', 'Aqoxy5G04333' => 'aox', 'Aqoxy7G00641' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3IZ0NN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4EF6AW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W9P8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79GA3M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C43NQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFCU6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G95YVJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCHK29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LU1UG8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX91RN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGB4B1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8DA0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9H7JI' => 'arhy', 'AT3G09320' => 'ath', 'AT3G60800' => 'ath', 'AT4G00840' => 'ath', 'AT4G22750' => 'ath', 'AT5G04270' => 'ath', 'ATR0090G003' => 'atr', 'ATR0559G349' => 'atr', 'ATR0680G261' => 'atr', 'ATR0810G048' => 'atr', 'Atru.chr12.831' => 'acertr', 'Atru.chr5.303' => 'acertr', 'Atru.chr5.748' => 'acertr', 'Atru.chr8.1999' => 'acertr', 'Atru.chr9.1436' => 'acertr', 'AUR62004211' => 'cqu', 'AUR62004548' => 'cqu', 'AUR62013637' => 'cqu', 'AUR62022662' => 'cqu', 'AUR62025777' => 'cqu', 'AUR62042386' => 'cqu', 'BcaB01g02310' => 'bca', 'BcaB01g06062' => 'bca', 'BcaB02g08975' => 'bca', 'BcaB02g08980' => 'bca', 'BcaC01g04228' => 'bca', 'BcaC01g06830' => 'bca', 'BcaC02g10186' => 'bca', 'BcaC02g12214' => 'bca', 'BcaC04g24101' => 'bca', 'BcaC05g29520' => 'bca', 'BcaC05g29661' => 'bca', 'BcaC06g32130' => 'bca', 'BcaC06g32131' => 'bca', 'BcaC07g40601' => 'bca', 'BcaC07g42641' => 'bca', 'BcaNung01038' => 'bca', 'BcaNung01676' => 'bca', 'BcaNung02480' => 'bca', 'BcaNung07376' => 'bca', 'BolC3t16146H' => 'bol', 'BolC3t16637H' => 'bol', 'BolC4t22257H' => 'bol', 'BolC4t24728H' => 'bol', 'BolC5t34517H' => 'bol', 'BolC7t45703H' => 'bol', 'BolC8t51166H' => 'bol', 'BolC9t53038H' => 'bol', 'BolC9t60000H' => 'bol', 'BraA01t01345Z' => 'bra', 'BraA01t01346Z' => 'bra', 'BraA01t01348Z' => 'bra', 'BraA03t12347Z' => 'bra', 'BraA03t12775Z' => 'bra', 'BraA03t14439Z' => 'bra', 'BraA04t15860Z' => 'bra', 'BraA05t19511Z' => 'bra', 'BraA05t22746Z' => 'bra', 'BraA09t35767Z' => 'bra', 'BraA09t40732Z' => 'bra', 'BraA10t45233Z' => 'bra', 'C03p38720' => 'bna', 'C03p43680' => 'bna', 'C04p06350' => 'bna', 'C04p31800' => 'bna', 'C05p58680' => 'bna', 'C07p52110' => 'bna', 'C08p35760' => 'bna', 'C09p01050' => 'bna', 'C09p72600' => 'bna', 'CAN.G106.2' => 'can', 'CAN.G1482.1' => 'can', 'CAN.G324.12' => 'can', 'CAN.G388.20' => 'can', 'CAN.G412.7' => 'can', 'CAN.G694.32' => 'can', 'CAN.G92.12' => 'can', 'CANSAT11G2353' => 'cansat', 'CANSAT21G1398' => 'cansat', 'CANSAT56G2456' => 'cansat', 'CANSAT56G3031' => 'cansat', 'CANSAT56G4539' => 'cansat', 'CARHR083680' => 'chi', 'CARHR171190' => 'chi', 'CARHR209010' => 'chi', 'CARHR229680' => 'chi', 'CARHR249490' => 'chi', 'Carub.0003s0844' => 'cru', 'Carub.0005s2755' => 'cru', 'Carub.0006s0322' => 'cru', 'Carub.0006s3586' => 'cru', 'Carub.0007s1855' => 'cru', 'Ca_07808_v3' => 'car', 'Ca_09535_v3' => 'car', 'Ca_10548_v3' => 'car', 'Ca_19913_v3' => 'car', 'Ca_19916_v3' => 'car', 'Ca_19975_v3' => 'car', 'CBR_g22876' => 'cbr', 'CBR_g22879' => 'cbr', 'CBR_g38491' => 'cbr', 'CBR_g54185' => 'cbr', 'CBR_g54190' => 'cbr', 'Cc02_g11020' => 'ccan', 'Cc02_g23920' => 'ccan', 'Cc02_g39860' => 'ccan', 'Cc02_g39870' => 'ccan', 'Cc03_g06760' => 'ccan', 'Cc06_g02450' => 'ccan', 'Cc09_g09450' => 'ccan', 'CDE02G1959' => 'cde', 'CDE04G0600' => 'cde', 'CDE07G1996' => 'cde', 'CDE07G2078' => 'cde', 'CDE11G0611' => 'cde', 'Cfa001683' => 'cfa', 'Cfa001734' => 'cfa', 'Cfa001737' => 'cfa', 'Cfa003751' => 'cfa', 'Cfa012019' => 'cfa', 'Cfa017353' => 'cfa', 'Cfa017732' => 'cfa', 'Cfa022464' => 'cfa', 'Ciclev10012400m.g' => 'ccl', 'Ciclev10021242m.g' => 'ccl', 'Ciclev10021302m.g' => 'ccl', 'Ciclev10021463m.g' => 'ccl', 'Ciclev10032359m.g' => 'ccl', 'CiPaw.01G081000' => 'cil', 'CiPaw.01G262500' => 'cil', 'CiPaw.01G269800' => 'cil', 'CiPaw.02G168400' => 'cil', 'CiPaw.05G119500' => 'cil', 'CiPaw.11G147300' => 'cil', 'ClCG01G003630' => 'cla', 'ClCG05G000510' => 'cla', 'ClCG05G002300' => 'cla', 'ClCG08G007650' => 'cla', 'ClCG10G021250' => 'cla', 'COL.COLO4_06218' => 'col', 'COL.COLO4_12538' => 'col', 'COL.COLO4_14775' => 'col', 'COL.COLO4_23875' => 'col', 'Cpa.g.sc141.16' => 'cpa', 'Cpa.g.sc169.16' => 'cpa', 'Cpa.g.sc244.4' => 'cpa', 'Cpa.g.sc244.5' => 'cpa', 'Cpa.g.sc29.87' => 'cpa', 'Cpa.g.sc53.115' => 'cpa', 'Cre03.g207502' => 'cre', 'Cre06.g277000' => 'cre', 'Cre09.g394050' => 'cre', 'CsaV3_3G007680' => 'csa', 'CsaV3_3G009710' => 'csa', 'CsaV3_3G034790' => 'csa', 'CsaV3_5G003750' => 'csa', 'CsaV3_6G036620' => 'csa', 'CSS0002288' => 'camsi', 'CSS0011250' => 'camsi', 'CSS0021619' => 'camsi', 'CSS0046701' => 'camsi', 'DCAR_006420' => 'dca', 'DCAR_006865' => 'dca', 'DCAR_008558' => 'dca', 'DCAR_028754' => 'dca', 'DCAR_028755' => 'dca', 'Dinv31218' => 'din', 'Dinv32371' => 'din', 'Dinv34250' => 'din', 'Dinv37156' => 'din', 'Dinv43704' => 'din', 'Duzib093G1811' => 'dzi', 'Duzib106G1622' => 'dzi', 'Duzib114G0504' => 'dzi', 'Duzib128G0338' => 'dzi', 'Duzib128G1577' => 'dzi', 'Duzib133G0104' => 'dzi', 'Duzib133G1080' => 'dzi', 'Duzib138G0324' => 'dzi', 'Duzib138G0394' => 'dzi', 'Duzib205G0122' => 'dzi', 'Duzib268G1020' => 'dzi', 'Duzib268G1359' => 'dzi', 'ECA232G3929' => 'eca', 'ECA236G2210' => 'eca', 'ECA236G2287' => 'eca', 'ECA240G4568' => 'eca', 'ECA247G0894' => 'eca', 'EL10Ac1g00200' => 'bvu', 'EL10Ac1g00886' => 'bvu', 'EL10As1g23091' => 'bvu', 'EL10As1g23092' => 'bvu', 'Eucgr.A01284' => 'egr', 'Eucgr.A01285' => 'egr', 'Eucgr.D02456' => 'egr', 'Eucgr.E00018' => 'egr', 'Eucgr.E01439' => 'egr', 'Eucgr.G02859' => 'egr', 'FAN01G0168' => 'fan', 'FAN01G0453' => 'fan', 'FAN01G2761' => 'fan', 'FAN02G1239' => 'fan', 'FAN03G0645' => 'fan', 'FAN03G2707' => 'fan', 'FAN03G2978' => 'fan', 'FAN04G0227' => 'fan', 'FAN06G0091' => 'fan', 'FAN06G1418' => 'fan', 'FAN06G1512' => 'fan', 'FAN06G1986' => 'fan', 'FAN06G2905' => 'fan', 'FAN06G4325' => 'fan', 'FAN08G0033' => 'fan', 'FAN09G0642' => 'fan', 'FAN10G1763' => 'fan', 'FAN10G2026' => 'fan', 'FAN10G2513' => 'fan', 'FAN10G3402' => 'fan', 'FAN10G3564' => 'fan', 'FAN10G3987' => 'fan', 'FAN13G1490' => 'fan', 'FAN14G5857' => 'fan', 'FAN18G1188' => 'fan', 'FvH4_5g00750' => 'fve', 'FvH4_6g13410' => 'fve', 'FvH4_7g11740' => 'fve', 'FvH4_7g17410' => 'fve', 'FvH4_7g18860' => 'fve', 'Glyma.01G099100' => 'gma', 'Glyma.01G142300' => 'gma', 'Glyma.03G025500' => 'gma', 'Glyma.03G069700' => 'gma', 'Glyma.03G260000' => 'gma', 'Glyma.09G269800' => 'gma', 'Glyma.10G208700' => 'gma', 'Glyma.18G220400' => 'gma', 'Glyma.20G182000' => 'gma', 'Gohir.A01G221726' => 'ghi', 'Gohir.A07G134600' => 'ghi', 'Gohir.A07G146000' => 'ghi', 'Gohir.A08G173900' => 'ghi', 'Gohir.A09G194900' => 'ghi', 'Gohir.A10G204100' => 'ghi', 'Gohir.A11G080600' => 'ghi', 'Gohir.A11G327500' => 'ghi', 'Gohir.A12G101800' => 'ghi', 'Gohir.D01G211200' => 'ghi', 'Gohir.D07G139200' => 'ghi', 'Gohir.D07G152100' => 'ghi', 'Gohir.D08G192600' => 'ghi', 'Gohir.D09G189200' => 'ghi', 'Gohir.D10G212000' => 'ghi', 'Gohir.D11G085200' => 'ghi', 'Gohir.D11G346400' => 'ghi', 'Gohir.D12G104800' => 'ghi', 'Gorai.001G151300' => 'gra', 'Gorai.001G174100' => 'gra', 'Gorai.002G257000' => 'gra', 'Gorai.004G202600' => 'gra', 'Gorai.007G090900' => 'gra', 'Gorai.007G376700' => 'gra', 'Gorai.008G114100' => 'gra', 'Gorai.011G237900' => 'gra', 'GSVIVG01005450001' => 'vvi', 'GSVIVG01016232001' => 'vvi', 'GSVIVG01026157001' => 'vvi', 'GSVIVG01027419001' => 'vvi', 'GSVIVG01027631001' => 'vvi', 'GSVIVG01034143001' => 'vvi', 'HanXRQChr03g0093921' => 'han', 'HanXRQChr04g0120001' => 'han', 'HanXRQChr04g0122561' => 'han', 'HanXRQChr09g0246851' => 'han', 'HanXRQChr10g0293311' => 'han', 'HanXRQChr13g0425231' => 'han', 'HanXRQChr16g0532571' => 'han', 'Haze_09050' => 'cav', 'Haze_15715' => 'cav', 'Haze_15716' => 'cav', 'Haze_16803' => 'cav', 'Haze_16850' => 'cav', 'Hma1.2p1_0301F.1_g118655' => 'hma', 'Hma1.2p1_0309F.1_g120590' => 'hma', 'Hma1.2p1_0936F.1_g238900' => 'hma', 'Hma1.2p1_3552F.1_g336740' => 'hma', 'HPP92_003520' => 'vpl', 'HPP92_006628' => 'vpl', 'HPP92_006645' => 'vpl', 'HPP92_014669' => 'vpl', 'HPP92_015077' => 'vpl', 'Hund16742' => 'sun', 'Hund17022' => 'sun', 'Lalb_Chr02g0152131' => 'lal', 'Lalb_Chr05g0225371' => 'lal', 'Lalb_Chr07g0189841' => 'lal', 'Lalb_Chr07g0192961' => 'lal', 'Lalb_Chr12g0208221' => 'lal', 'Lalb_Chr13g0291211' => 'lal', 'Lalb_Chr13g0291781' => 'lal', 'Lalb_Chr18g0044651' => 'lal', 'Lalb_Chr21g0313731' => 'lal', 'Lj1g0022533' => 'lja', 'Lj2A18T50' => 'lonja', 'Lj2A92G93' => 'lonja', 'Lj3A965T73' => 'lonja', 'Lj3g0000673' => 'lja', 'Lj3g0002666' => 'lja', 'Lj4g0016985' => 'lja', 'Lj5g0003625' => 'lja', 'Lj7A529G36' => 'lonja', 'Lj9A569T49' => 'lonja', 'Lj9A604T63' => 'lonja', 'Lsat_1_v5_gn_3_132060' => 'lsa', 'Lsat_1_v5_gn_4_68941' => 'lsa', 'Lsat_1_v5_gn_5_95580' => 'lsa', 'Lsat_1_v5_gn_7_161' => 'lsa', 'Lsat_1_v5_gn_7_7041' => 'lsa', 'Lsat_1_v5_gn_9_33481' => 'lsa', 'Lsat_1_v5_gn_9_68260' => 'lsa', 'Manes.01G073100' => 'mes', 'Manes.01G266300' => 'mes', 'Manes.02G033300' => 'mes', 'Manes.05G017900' => 'mes', 'Manes.05G046100' => 'mes', 'Manes.08G080900' => 'mes', 'Manes.10G049400' => 'mes', 'Mapoly0009s0186' => 'mpo', 'Mapoly0036s0118' => 'mpo', 'Mapoly0101s0046' => 'mpo', 'MBI04_g30218_MAGBIO' => 'mbi', 'MBI04_g35564_MAGBIO' => 'mbi', 'MBI12_g34011_MAGBIO' => 'mbi', 'MBI14_g04655_MAGBIO' => 'mbi', 'MCO07G653' => 'mco', 'MCO10G173' => 'mco', 'MD01G1087100' => 'mdo', 'MD01G1104200' => 'mdo', 'MD02G1205100' => 'mdo', 'MD04G1079200' => 'mdo', 'MD04G1131400' => 'mdo', 'MD07G1121600' => 'mdo', 'MD07G1157300' => 'mdo', 'MD07G1171000' => 'mdo', 'MD12G1144500' => 'mdo', 'Medtr1g094610' => 'mtr', 'Medtr4g021795' => 'mtr', 'Medtr4g023760' => 'mtr', 'Medtr7g118050' => 'mtr', 'MELO3C005582.2' => 'cme', 'MELO3C005989.2' => 'cme', 'MELO3C006192.2' => 'cme', 'MELO3C009248.2' => 'cme', 'MELO3C019817.2' => 'cme', 'Migut.B01625' => 'egut', 'Migut.B01915' => 'egut', 'Migut.F01721' => 'egut', 'Migut.J00314' => 'egut', 'MSTRG.20742' => 'ama', 'MSTRG.8134' => 'ama', 'Nitab4.5_0000096g0010' => 'nta', 'Nitab4.5_0000202g0030' => 'nta', 'Nitab4.5_0000216g0370' => 'nta', 'Nitab4.5_0000457g0230' => 'nta', 'Nitab4.5_0001702g0170' => 'nta', 'Nitab4.5_0003607g0010' => 'nta', 'Nitab4.5_0004917g0020' => 'nta', 'Nitab4.5_0007059g0010' => 'nta', 'Nitab4.5_0007184g0010' => 'nta', 'Nitab4.5_0007346g0020' => 'nta', 'Nn1g00410' => 'nnu', 'Nn1g01252' => 'nnu', 'Nn2g11168' => 'nnu', 'Nn2g13403' => 'nnu', 'Nn2g13760' => 'nnu', 'Nn4g26380' => 'nnu', 'Oeu000806.2' => 'oeu', 'Oeu005788.1' => 'oeu', 'Oeu006900.3' => 'oeu', 'Oeu007797.1' => 'oeu', 'Oeu011932.1' => 'oeu', 'Oeu022739.1' => 'oeu', 'Oeu037918.1' => 'oeu', 'Oeu055490.2' => 'oeu', 'Os01g0844400' => 'osa', 'Os02g0819100' => 'osa', 'Os03g0804300' => 'osa', 'Os05g0458000' => 'osa', 'Os07g0467800' => 'osa', 'Os12g0602200' => 'osa', 'Peaxi162Scf00013g03444' => 'pax', 'Peaxi162Scf00094g01120' => 'pax', 'Peaxi162Scf00191g01211' => 'pax', 'Peaxi162Scf00238g01110' => 'pax', 'Peaxi162Scf00330g00719' => 'pax', 'Peaxi162Scf00627g00018' => 'pax', 'PGR031G2686' => 'pgr', 'PGR042G0809' => 'pgr', 'PGR142G0193' => 'pgr', 'PGSC0003DMG400011066' => 'stu', 'PGSC0003DMG400012041' => 'stu', 'PGSC0003DMG400013678' => 'stu', 'PGSC0003DMG400023477' => 'stu', 'PGSC0003DMG400025956' => 'stu', 'PGSC0003DMG401019151' => 'stu', 'Phvul.006G116400' => 'pvu', 'Phvul.007G097300' => 'pvu', 'Phvul.010G015000' => 'pvu', 'Phvul.010G083900' => 'pvu', 'Potri.001G117100' => 'ptr', 'Potri.002G147300' => 'ptr', 'Potri.003G115600' => 'ptr', 'Potri.006G087400' => 'ptr', 'Potri.010G226100' => 'ptr', 'Potri.014G069200' => 'ptr', 'Potri.014G104000' => 'ptr', 'Potri.016G100200' => 'ptr', 'Pp3c10_20450' => 'ppa', 'Pp3c1_42400' => 'ppa', 'Pp3c3_24390' => 'ppa', 'Pp3c3_2860' => 'ppa', 'PRCOL_00003193' => 'pco', 'Prupe.2G144500' => 'ppe', 'Prupe.2G195700' => 'ppe', 'Prupe.2G209800' => 'ppe', 'Prupe.5G080000' => 'ppe', 'Prupe.6G257900' => 'ppe', 'Psat3g001160' => 'psa', 'Psat6g181880' => 'psa', 'Psat7g233720' => 'psa', 'PSO063G7587' => 'pso', 'PSO339G2145' => 'pso', 'PSO339G3369' => 'pso', 'PSO478G2747' => 'pso', 'PSO513G0140' => 'pso', 'PSO782G1614' => 'pso', 'PSO782G4889' => 'pso', 'PSO782G5485' => 'pso', 'PSO801G0241' => 'pso', 'QL07p048854' => 'qlo', 'QL08p046745' => 'qlo', 'QL08p052606' => 'qlo', 'QL08p053414' => 'qlo', 'QL08p054868' => 'qlo', 'RcHm_v2.0_Chr1g0350251' => 'rch', 'RcHm_v2.0_Chr1g0360851' => 'rch', 'RcHm_v2.0_Chr1g0362791' => 'rch', 'RcHm_v2.0_Chr3g0466281' => 'rch', 'RcHm_v2.0_Chr7g0201481' => 'rch', 'Rhsim01G0148600' => 'rsi', 'Rhsim05G0194400' => 'rsi', 'Rhsim07G0000700' => 'rsi', 'Rhsim07G0000800' => 'rsi', 'Rhsim07G0027900' => 'rsi', 'Rhsim09G0149500' => 'rsi', 'RhsimUnG0186900' => 'rsi', 'Sabra01G0089900' => 'sbr', 'Sabra02G0114700' => 'sbr', 'Sabra02G0116300' => 'sbr', 'Sabra03G0080100' => 'sbr', 'Sabra08G0024300' => 'sbr', 'Sabra10G0174300' => 'sbr', 'Sabra14G0048900' => 'sbr', 'Sabra14G0076500' => 'sbr', 'SalBow5G2513' => 'sbo', 'Sc01g0002300' => 'sci', 'Sc01g0004450' => 'sci', 'Sc06g0001680' => 'sci', 'Sc23g0003580' => 'sci', 'Sed0000913' => 'sed', 'Sed0001655' => 'sed', 'Sed0007745' => 'sed', 'Sed0010951' => 'sed', 'Sed0017599' => 'sed', 'Sed0021405' => 'sed', 'Sed0022810' => 'sed', 'SEGI_07099' => 'sgi', 'SEGI_11931' => 'sgi', 'SEGI_13187' => 'sgi', 'SEGI_29958' => 'sgi', 'SEGI_36351' => 'sgi', 'SGA_v2.0_scaffold126G33770' => 'sas', 'SGA_v2.0_scaffold153G37003' => 'sas', 'SGA_v2.0_scaffold2G01359' => 'sas', 'SGA_v2.0_scaffold5G03064' => 'sas', 'SGA_v2.0_scaffold95G28903' => 'sas', 'SHI12701' => 'shi', 'SHI26410' => 'shi', 'SHI38997' => 'shi', 'SHI53759' => 'shi', 'SHI53886' => 'shi', 'SHI54714' => 'shi', 'SMO011G0041' => 'smo', 'SMO146G0251' => 'smo', 'SMO160G0004' => 'smo', 'SMO174G0057' => 'smo', 'SMO244G0089' => 'smo', 'SMO296G0011' => 'smo', 'Solyc01g091280.3' => 'sly', 'Solyc05g047610.3' => 'sly', 'Solyc05g047640.3' => 'sly', 'Solyc05g055630.3' => 'sly', 'Solyc10g018160.2' => 'sly', 'Solyc10g084820.2' => 'sly', 'Solyc10g086565.2' => 'sly', 'Sopen01g037030' => 'spe', 'Sopen05g027920' => 'spe', 'Sopen05g034070' => 'spe', 'Sopen10g007260' => 'spe', 'Sopen10g034260' => 'spe', 'Sopen10g035950' => 'spe', 'Sp3g07710' => 'spa', 'Sp4g27420' => 'spa', 'Sp5g02450' => 'spa', 'Sp6g01280' => 'spa', 'Sp6g38480' => 'spa', 'Sp7g20780' => 'spa', 'TAR374G1413' => 'tar', 'TAR623G1777' => 'tar', 'TAR629G2370' => 'tar', 'TAR633G1759' => 'tar', 'TAR636G3387' => 'tar', 'THA.LOC104802447' => 'tha', 'THA.LOC104813916' => 'tha', 'THA.LOC104816423' => 'tha', 'THA.LOC104817246' => 'tha', 'THA.LOC104825895' => 'tha', 'Thecc.01G335200' => 'tca', 'Thecc.01G377400' => 'tca', 'Thecc.03G262200' => 'tca', 'Thecc.05G036800' => 'tca', 'Thecc.10G080500' => 'tca', 'Thecc.10G080800' => 'tca', 'Thhalv10001560m.g' => 'esa', 'Thhalv10006120m.g' => 'esa', 'Thhalv10014375m.g' => 'esa', 'Thhalv10021264m.g' => 'esa', 'Thhalv10028856m.g' => 'esa', 'TPR.G1914' => 'tpr', 'TPR.G4757' => 'tpr', 'TPR.G5595' => 'tpr', 'TWI14G0952' => 'twi', 'TWI14G1307' => 'twi', 'TWI38G2143' => 'twi', 'TWI59G0826' => 'twi', 'TWI77G0527' => 'twi', 'TWI81G0150' => 'twi', 'unitig_21.g21018' => 'ugi', 'unitig_26.g9725' => 'ugi', 'unitig_744.g24653' => 'ugi', 'unitig_749.g13778' => 'ugi', 'unitig_899.g15035' => 'ugi', 'vmacro04296' => 'vma', 'vmacro04852' => 'vma', 'vmacro13404' => 'vma', 'vmacro20169' => 'vma', 'vmacro21014' => 'vma', 'VMungo0331G0237' => 'vmu', 'VMungo0331G0706' => 'vmu', 'VMungo0331G1361' => 'vmu', 'VMungo0331G1489' => 'vmu', 'VMungo0540G1037' => 'vmu', 'VMungo0720G2487' => 'vmu', 'VMungo0720G2721' => 'vmu', 'Zm00001eb086860' => 'zma', 'Zm00001eb104760' => 'zma', 'Zm00001eb148220' => 'zma', 'Zm00001eb259030' => 'zma', 'Zm00001eb289590' => 'zma', 'Zm00001eb420150' => 'zma' ) $gf_id = 'HOM05D000968' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000968' ) $data_identifier = 'HOM05D000968' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 19, 'bol' => (int) 9, 'bra' => (int) 12, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 5, 'ccan' => (int) 7, 'cde' => (int) 5, 'cfa' => (int) 8, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 4, 'dca' => (int) 5, 'din' => (int) 5, 'dzi' => (int) 12, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 25, 'fve' => (int) 5, 'gma' => (int) 9, 'ghi' => (int) 18, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 7, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 5, 'sun' => (int) 2, 'lal' => (int) 9, 'lja' => (int) 5, 'lonja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 9, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 2, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 3, 'stu' => (int) 6, 'pvu' => (int) 4, 'ptr' => (int) 8, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 3, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 1, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 5, 'sas' => (int) 5, 'shi' => (int) 6, 'smo' => (int) 6, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 3, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420150' $species_info = array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ) $local_species = 'sed' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000968', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p31690' => 'bna', 'A03p36040' => 'bna', 'A03p53730' => 'bna', 'A04p01410' => 'bna', 'A05p05420' => 'bna', 'A05p39630' => 'bna', 'A05p39640' => 'bna', 'A09p00970' => 'bna', 'A09p53060' => 'bna', 'A10p31890' => 'bna', 'Aa31LG10G15040' => 'aar', 'Aa31LG1G21090' => 'aar', 'Aa31LG1G26900' => 'aar', 'Aa31LG3G1820' => 'aar', 'Aa31LG5G1100' => 'aar', 'Aa31LG6G4740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2265' => 'aag', 'Actinidia07998' => 'ach', 'Actinidia11266' => 'ach', 'Actinidia12682' => 'ach', 'Actinidia26479' => 'ach', 'Actinidia31406' => 'ach', 'Actinidia32437' => 'ach', 'Actinidia38862' => 'ach', 'Ah.05g174230' => 'amhyb', 'Ah.05g179070' => 'amhyb', 'Ah.05g179090' => 'amhyb', 'Ah.12g059950' => 'amhyb', 'AL3G20480' => 'aly', 'AL4G44520' => 'aly', 'AL5G43110' => 'aly', 'AL6G13890' => 'aly', 'AL6G52620' => 'aly', 'AL7G30830' => 'aly', 'Aqoxy1G00899' => 'aox', 'Aqoxy5G04333' => 'aox', 'Aqoxy7G00641' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3IZ0NN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4EF6AW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W9P8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79GA3M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C43NQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFCU6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G95YVJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCHK29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LU1UG8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX91RN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGB4B1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8DA0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9H7JI' => 'arhy', 'AT3G09320' => 'ath', 'AT3G60800' => 'ath', 'AT4G00840' => 'ath', 'AT4G22750' => 'ath', 'AT5G04270' => 'ath', 'ATR0090G003' => 'atr', 'ATR0559G349' => 'atr', 'ATR0680G261' => 'atr', 'ATR0810G048' => 'atr', 'Atru.chr12.831' => 'acertr', 'Atru.chr5.303' => 'acertr', 'Atru.chr5.748' => 'acertr', 'Atru.chr8.1999' => 'acertr', 'Atru.chr9.1436' => 'acertr', 'AUR62004211' => 'cqu', 'AUR62004548' => 'cqu', 'AUR62013637' => 'cqu', 'AUR62022662' => 'cqu', 'AUR62025777' => 'cqu', 'AUR62042386' => 'cqu', 'BcaB01g02310' => 'bca', 'BcaB01g06062' => 'bca', 'BcaB02g08975' => 'bca', 'BcaB02g08980' => 'bca', 'BcaC01g04228' => 'bca', 'BcaC01g06830' => 'bca', 'BcaC02g10186' => 'bca', 'BcaC02g12214' => 'bca', 'BcaC04g24101' => 'bca', 'BcaC05g29520' => 'bca', 'BcaC05g29661' => 'bca', 'BcaC06g32130' => 'bca', 'BcaC06g32131' => 'bca', 'BcaC07g40601' => 'bca', 'BcaC07g42641' => 'bca', 'BcaNung01038' => 'bca', 'BcaNung01676' => 'bca', 'BcaNung02480' => 'bca', 'BcaNung07376' => 'bca', 'BolC3t16146H' => 'bol', 'BolC3t16637H' => 'bol', 'BolC4t22257H' => 'bol', 'BolC4t24728H' => 'bol', 'BolC5t34517H' => 'bol', 'BolC7t45703H' => 'bol', 'BolC8t51166H' => 'bol', 'BolC9t53038H' => 'bol', 'BolC9t60000H' => 'bol', 'BraA01t01345Z' => 'bra', 'BraA01t01346Z' => 'bra', 'BraA01t01348Z' => 'bra', 'BraA03t12347Z' => 'bra', 'BraA03t12775Z' => 'bra', 'BraA03t14439Z' => 'bra', 'BraA04t15860Z' => 'bra', 'BraA05t19511Z' => 'bra', 'BraA05t22746Z' => 'bra', 'BraA09t35767Z' => 'bra', 'BraA09t40732Z' => 'bra', 'BraA10t45233Z' => 'bra', 'C03p38720' => 'bna', 'C03p43680' => 'bna', 'C04p06350' => 'bna', 'C04p31800' => 'bna', 'C05p58680' => 'bna', 'C07p52110' => 'bna', 'C08p35760' => 'bna', 'C09p01050' => 'bna', 'C09p72600' => 'bna', 'CAN.G106.2' => 'can', 'CAN.G1482.1' => 'can', 'CAN.G324.12' => 'can', 'CAN.G388.20' => 'can', 'CAN.G412.7' => 'can', 'CAN.G694.32' => 'can', 'CAN.G92.12' => 'can', 'CANSAT11G2353' => 'cansat', 'CANSAT21G1398' => 'cansat', 'CANSAT56G2456' => 'cansat', 'CANSAT56G3031' => 'cansat', 'CANSAT56G4539' => 'cansat', 'CARHR083680' => 'chi', 'CARHR171190' => 'chi', 'CARHR209010' => 'chi', 'CARHR229680' => 'chi', 'CARHR249490' => 'chi', 'Carub.0003s0844' => 'cru', 'Carub.0005s2755' => 'cru', 'Carub.0006s0322' => 'cru', 'Carub.0006s3586' => 'cru', 'Carub.0007s1855' => 'cru', 'Ca_07808_v3' => 'car', 'Ca_09535_v3' => 'car', 'Ca_10548_v3' => 'car', 'Ca_19913_v3' => 'car', 'Ca_19916_v3' => 'car', 'Ca_19975_v3' => 'car', 'CBR_g22876' => 'cbr', 'CBR_g22879' => 'cbr', 'CBR_g38491' => 'cbr', 'CBR_g54185' => 'cbr', 'CBR_g54190' => 'cbr', 'Cc02_g11020' => 'ccan', 'Cc02_g23920' => 'ccan', 'Cc02_g39860' => 'ccan', 'Cc02_g39870' => 'ccan', 'Cc03_g06760' => 'ccan', 'Cc06_g02450' => 'ccan', 'Cc09_g09450' => 'ccan', 'CDE02G1959' => 'cde', 'CDE04G0600' => 'cde', 'CDE07G1996' => 'cde', 'CDE07G2078' => 'cde', 'CDE11G0611' => 'cde', 'Cfa001683' => 'cfa', 'Cfa001734' => 'cfa', 'Cfa001737' => 'cfa', 'Cfa003751' => 'cfa', 'Cfa012019' => 'cfa', 'Cfa017353' => 'cfa', 'Cfa017732' => 'cfa', 'Cfa022464' => 'cfa', 'Ciclev10012400m.g' => 'ccl', 'Ciclev10021242m.g' => 'ccl', 'Ciclev10021302m.g' => 'ccl', 'Ciclev10021463m.g' => 'ccl', 'Ciclev10032359m.g' => 'ccl', 'CiPaw.01G081000' => 'cil', 'CiPaw.01G262500' => 'cil', 'CiPaw.01G269800' => 'cil', 'CiPaw.02G168400' => 'cil', 'CiPaw.05G119500' => 'cil', 'CiPaw.11G147300' => 'cil', 'ClCG01G003630' => 'cla', 'ClCG05G000510' => 'cla', 'ClCG05G002300' => 'cla', 'ClCG08G007650' => 'cla', 'ClCG10G021250' => 'cla', 'COL.COLO4_06218' => 'col', 'COL.COLO4_12538' => 'col', 'COL.COLO4_14775' => 'col', 'COL.COLO4_23875' => 'col', 'Cpa.g.sc141.16' => 'cpa', 'Cpa.g.sc169.16' => 'cpa', 'Cpa.g.sc244.4' => 'cpa', 'Cpa.g.sc244.5' => 'cpa', 'Cpa.g.sc29.87' => 'cpa', 'Cpa.g.sc53.115' => 'cpa', 'Cre03.g207502' => 'cre', 'Cre06.g277000' => 'cre', 'Cre09.g394050' => 'cre', 'CsaV3_3G007680' => 'csa', 'CsaV3_3G009710' => 'csa', 'CsaV3_3G034790' => 'csa', 'CsaV3_5G003750' => 'csa', 'CsaV3_6G036620' => 'csa', 'CSS0002288' => 'camsi', 'CSS0011250' => 'camsi', 'CSS0021619' => 'camsi', 'CSS0046701' => 'camsi', 'DCAR_006420' => 'dca', 'DCAR_006865' => 'dca', 'DCAR_008558' => 'dca', 'DCAR_028754' => 'dca', 'DCAR_028755' => 'dca', 'Dinv31218' => 'din', 'Dinv32371' => 'din', 'Dinv34250' => 'din', 'Dinv37156' => 'din', 'Dinv43704' => 'din', 'Duzib093G1811' => 'dzi', 'Duzib106G1622' => 'dzi', 'Duzib114G0504' => 'dzi', 'Duzib128G0338' => 'dzi', 'Duzib128G1577' => 'dzi', 'Duzib133G0104' => 'dzi', 'Duzib133G1080' => 'dzi', 'Duzib138G0324' => 'dzi', 'Duzib138G0394' => 'dzi', 'Duzib205G0122' => 'dzi', 'Duzib268G1020' => 'dzi', 'Duzib268G1359' => 'dzi', 'ECA232G3929' => 'eca', 'ECA236G2210' => 'eca', 'ECA236G2287' => 'eca', 'ECA240G4568' => 'eca', 'ECA247G0894' => 'eca', 'EL10Ac1g00200' => 'bvu', 'EL10Ac1g00886' => 'bvu', 'EL10As1g23091' => 'bvu', 'EL10As1g23092' => 'bvu', 'Eucgr.A01284' => 'egr', 'Eucgr.A01285' => 'egr', 'Eucgr.D02456' => 'egr', 'Eucgr.E00018' => 'egr', 'Eucgr.E01439' => 'egr', 'Eucgr.G02859' => 'egr', 'FAN01G0168' => 'fan', 'FAN01G0453' => 'fan', 'FAN01G2761' => 'fan', 'FAN02G1239' => 'fan', 'FAN03G0645' => 'fan', 'FAN03G2707' => 'fan', 'FAN03G2978' => 'fan', 'FAN04G0227' => 'fan', 'FAN06G0091' => 'fan', 'FAN06G1418' => 'fan', 'FAN06G1512' => 'fan', 'FAN06G1986' => 'fan', 'FAN06G2905' => 'fan', 'FAN06G4325' => 'fan', 'FAN08G0033' => 'fan', 'FAN09G0642' => 'fan', 'FAN10G1763' => 'fan', 'FAN10G2026' => 'fan', 'FAN10G2513' => 'fan', 'FAN10G3402' => 'fan', 'FAN10G3564' => 'fan', 'FAN10G3987' => 'fan', 'FAN13G1490' => 'fan', 'FAN14G5857' => 'fan', 'FAN18G1188' => 'fan', 'FvH4_5g00750' => 'fve', 'FvH4_6g13410' => 'fve', 'FvH4_7g11740' => 'fve', 'FvH4_7g17410' => 'fve', 'FvH4_7g18860' => 'fve', 'Glyma.01G099100' => 'gma', 'Glyma.01G142300' => 'gma', 'Glyma.03G025500' => 'gma', 'Glyma.03G069700' => 'gma', 'Glyma.03G260000' => 'gma', 'Glyma.09G269800' => 'gma', 'Glyma.10G208700' => 'gma', 'Glyma.18G220400' => 'gma', 'Glyma.20G182000' => 'gma', 'Gohir.A01G221726' => 'ghi', 'Gohir.A07G134600' => 'ghi', 'Gohir.A07G146000' => 'ghi', 'Gohir.A08G173900' => 'ghi', 'Gohir.A09G194900' => 'ghi', 'Gohir.A10G204100' => 'ghi', 'Gohir.A11G080600' => 'ghi', 'Gohir.A11G327500' => 'ghi', 'Gohir.A12G101800' => 'ghi', 'Gohir.D01G211200' => 'ghi', 'Gohir.D07G139200' => 'ghi', 'Gohir.D07G152100' => 'ghi', 'Gohir.D08G192600' => 'ghi', 'Gohir.D09G189200' => 'ghi', 'Gohir.D10G212000' => 'ghi', 'Gohir.D11G085200' => 'ghi', 'Gohir.D11G346400' => 'ghi', 'Gohir.D12G104800' => 'ghi', 'Gorai.001G151300' => 'gra', 'Gorai.001G174100' => 'gra', 'Gorai.002G257000' => 'gra', 'Gorai.004G202600' => 'gra', 'Gorai.007G090900' => 'gra', 'Gorai.007G376700' => 'gra', 'Gorai.008G114100' => 'gra', 'Gorai.011G237900' => 'gra', 'GSVIVG01005450001' => 'vvi', 'GSVIVG01016232001' => 'vvi', 'GSVIVG01026157001' => 'vvi', 'GSVIVG01027419001' => 'vvi', 'GSVIVG01027631001' => 'vvi', 'GSVIVG01034143001' => 'vvi', 'HanXRQChr03g0093921' => 'han', 'HanXRQChr04g0120001' => 'han', 'HanXRQChr04g0122561' => 'han', 'HanXRQChr09g0246851' => 'han', 'HanXRQChr10g0293311' => 'han', 'HanXRQChr13g0425231' => 'han', 'HanXRQChr16g0532571' => 'han', 'Haze_09050' => 'cav', 'Haze_15715' => 'cav', 'Haze_15716' => 'cav', 'Haze_16803' => 'cav', 'Haze_16850' => 'cav', 'Hma1.2p1_0301F.1_g118655' => 'hma', 'Hma1.2p1_0309F.1_g120590' => 'hma', 'Hma1.2p1_0936F.1_g238900' => 'hma', 'Hma1.2p1_3552F.1_g336740' => 'hma', 'HPP92_003520' => 'vpl', 'HPP92_006628' => 'vpl', 'HPP92_006645' => 'vpl', 'HPP92_014669' => 'vpl', 'HPP92_015077' => 'vpl', 'Hund16742' => 'sun', 'Hund17022' => 'sun', 'Lalb_Chr02g0152131' => 'lal', 'Lalb_Chr05g0225371' => 'lal', 'Lalb_Chr07g0189841' => 'lal', 'Lalb_Chr07g0192961' => 'lal', 'Lalb_Chr12g0208221' => 'lal', 'Lalb_Chr13g0291211' => 'lal', 'Lalb_Chr13g0291781' => 'lal', 'Lalb_Chr18g0044651' => 'lal', 'Lalb_Chr21g0313731' => 'lal', 'Lj1g0022533' => 'lja', 'Lj2A18T50' => 'lonja', 'Lj2A92G93' => 'lonja', 'Lj3A965T73' => 'lonja', 'Lj3g0000673' => 'lja', 'Lj3g0002666' => 'lja', 'Lj4g0016985' => 'lja', 'Lj5g0003625' => 'lja', 'Lj7A529G36' => 'lonja', 'Lj9A569T49' => 'lonja', 'Lj9A604T63' => 'lonja', 'Lsat_1_v5_gn_3_132060' => 'lsa', 'Lsat_1_v5_gn_4_68941' => 'lsa', 'Lsat_1_v5_gn_5_95580' => 'lsa', 'Lsat_1_v5_gn_7_161' => 'lsa', 'Lsat_1_v5_gn_7_7041' => 'lsa', 'Lsat_1_v5_gn_9_33481' => 'lsa', 'Lsat_1_v5_gn_9_68260' => 'lsa', 'Manes.01G073100' => 'mes', 'Manes.01G266300' => 'mes', 'Manes.02G033300' => 'mes', 'Manes.05G017900' => 'mes', 'Manes.05G046100' => 'mes', 'Manes.08G080900' => 'mes', 'Manes.10G049400' => 'mes', 'Mapoly0009s0186' => 'mpo', 'Mapoly0036s0118' => 'mpo', 'Mapoly0101s0046' => 'mpo', 'MBI04_g30218_MAGBIO' => 'mbi', 'MBI04_g35564_MAGBIO' => 'mbi', 'MBI12_g34011_MAGBIO' => 'mbi', 'MBI14_g04655_MAGBIO' => 'mbi', 'MCO07G653' => 'mco', 'MCO10G173' => 'mco', 'MD01G1087100' => 'mdo', 'MD01G1104200' => 'mdo', 'MD02G1205100' => 'mdo', 'MD04G1079200' => 'mdo', 'MD04G1131400' => 'mdo', 'MD07G1121600' => 'mdo', 'MD07G1157300' => 'mdo', 'MD07G1171000' => 'mdo', 'MD12G1144500' => 'mdo', 'Medtr1g094610' => 'mtr', 'Medtr4g021795' => 'mtr', 'Medtr4g023760' => 'mtr', 'Medtr7g118050' => 'mtr', 'MELO3C005582.2' => 'cme', 'MELO3C005989.2' => 'cme', 'MELO3C006192.2' => 'cme', 'MELO3C009248.2' => 'cme', 'MELO3C019817.2' => 'cme', 'Migut.B01625' => 'egut', 'Migut.B01915' => 'egut', 'Migut.F01721' => 'egut', 'Migut.J00314' => 'egut', 'MSTRG.20742' => 'ama', 'MSTRG.8134' => 'ama', 'Nitab4.5_0000096g0010' => 'nta', 'Nitab4.5_0000202g0030' => 'nta', 'Nitab4.5_0000216g0370' => 'nta', 'Nitab4.5_0000457g0230' => 'nta', 'Nitab4.5_0001702g0170' => 'nta', 'Nitab4.5_0003607g0010' => 'nta', 'Nitab4.5_0004917g0020' => 'nta', 'Nitab4.5_0007059g0010' => 'nta', 'Nitab4.5_0007184g0010' => 'nta', 'Nitab4.5_0007346g0020' => 'nta', 'Nn1g00410' => 'nnu', 'Nn1g01252' => 'nnu', 'Nn2g11168' => 'nnu', 'Nn2g13403' => 'nnu', 'Nn2g13760' => 'nnu', 'Nn4g26380' => 'nnu', 'Oeu000806.2' => 'oeu', 'Oeu005788.1' => 'oeu', 'Oeu006900.3' => 'oeu', 'Oeu007797.1' => 'oeu', 'Oeu011932.1' => 'oeu', 'Oeu022739.1' => 'oeu', 'Oeu037918.1' => 'oeu', 'Oeu055490.2' => 'oeu', 'Os01g0844400' => 'osa', 'Os02g0819100' => 'osa', 'Os03g0804300' => 'osa', 'Os05g0458000' => 'osa', 'Os07g0467800' => 'osa', 'Os12g0602200' => 'osa', 'Peaxi162Scf00013g03444' => 'pax', 'Peaxi162Scf00094g01120' => 'pax', 'Peaxi162Scf00191g01211' => 'pax', 'Peaxi162Scf00238g01110' => 'pax', 'Peaxi162Scf00330g00719' => 'pax', 'Peaxi162Scf00627g00018' => 'pax', 'PGR031G2686' => 'pgr', 'PGR042G0809' => 'pgr', 'PGR142G0193' => 'pgr', 'PGSC0003DMG400011066' => 'stu', 'PGSC0003DMG400012041' => 'stu', 'PGSC0003DMG400013678' => 'stu', 'PGSC0003DMG400023477' => 'stu', 'PGSC0003DMG400025956' => 'stu', 'PGSC0003DMG401019151' => 'stu', 'Phvul.006G116400' => 'pvu', 'Phvul.007G097300' => 'pvu', 'Phvul.010G015000' => 'pvu', 'Phvul.010G083900' => 'pvu', 'Potri.001G117100' => 'ptr', 'Potri.002G147300' => 'ptr', 'Potri.003G115600' => 'ptr', 'Potri.006G087400' => 'ptr', 'Potri.010G226100' => 'ptr', 'Potri.014G069200' => 'ptr', 'Potri.014G104000' => 'ptr', 'Potri.016G100200' => 'ptr', 'Pp3c10_20450' => 'ppa', 'Pp3c1_42400' => 'ppa', 'Pp3c3_24390' => 'ppa', 'Pp3c3_2860' => 'ppa', 'PRCOL_00003193' => 'pco', 'Prupe.2G144500' => 'ppe', 'Prupe.2G195700' => 'ppe', 'Prupe.2G209800' => 'ppe', 'Prupe.5G080000' => 'ppe', 'Prupe.6G257900' => 'ppe', 'Psat3g001160' => 'psa', 'Psat6g181880' => 'psa', 'Psat7g233720' => 'psa', 'PSO063G7587' => 'pso', 'PSO339G2145' => 'pso', 'PSO339G3369' => 'pso', 'PSO478G2747' => 'pso', 'PSO513G0140' => 'pso', 'PSO782G1614' => 'pso', 'PSO782G4889' => 'pso', 'PSO782G5485' => 'pso', 'PSO801G0241' => 'pso', 'QL07p048854' => 'qlo', 'QL08p046745' => 'qlo', 'QL08p052606' => 'qlo', 'QL08p053414' => 'qlo', 'QL08p054868' => 'qlo', 'RcHm_v2.0_Chr1g0350251' => 'rch', 'RcHm_v2.0_Chr1g0360851' => 'rch', 'RcHm_v2.0_Chr1g0362791' => 'rch', 'RcHm_v2.0_Chr3g0466281' => 'rch', 'RcHm_v2.0_Chr7g0201481' => 'rch', 'Rhsim01G0148600' => 'rsi', 'Rhsim05G0194400' => 'rsi', 'Rhsim07G0000700' => 'rsi', 'Rhsim07G0000800' => 'rsi', 'Rhsim07G0027900' => 'rsi', 'Rhsim09G0149500' => 'rsi', 'RhsimUnG0186900' => 'rsi', 'Sabra01G0089900' => 'sbr', 'Sabra02G0114700' => 'sbr', 'Sabra02G0116300' => 'sbr', 'Sabra03G0080100' => 'sbr', 'Sabra08G0024300' => 'sbr', 'Sabra10G0174300' => 'sbr', 'Sabra14G0048900' => 'sbr', 'Sabra14G0076500' => 'sbr', 'SalBow5G2513' => 'sbo', 'Sc01g0002300' => 'sci', 'Sc01g0004450' => 'sci', 'Sc06g0001680' => 'sci', 'Sc23g0003580' => 'sci', 'Sed0000913' => 'sed', 'Sed0001655' => 'sed', 'Sed0007745' => 'sed', 'Sed0010951' => 'sed', 'Sed0017599' => 'sed', 'Sed0021405' => 'sed', 'Sed0022810' => 'sed', 'SEGI_07099' => 'sgi', 'SEGI_11931' => 'sgi', 'SEGI_13187' => 'sgi', 'SEGI_29958' => 'sgi', 'SEGI_36351' => 'sgi', 'SGA_v2.0_scaffold126G33770' => 'sas', 'SGA_v2.0_scaffold153G37003' => 'sas', 'SGA_v2.0_scaffold2G01359' => 'sas', 'SGA_v2.0_scaffold5G03064' => 'sas', 'SGA_v2.0_scaffold95G28903' => 'sas', 'SHI12701' => 'shi', 'SHI26410' => 'shi', 'SHI38997' => 'shi', 'SHI53759' => 'shi', 'SHI53886' => 'shi', 'SHI54714' => 'shi', 'SMO011G0041' => 'smo', 'SMO146G0251' => 'smo', 'SMO160G0004' => 'smo', 'SMO174G0057' => 'smo', 'SMO244G0089' => 'smo', 'SMO296G0011' => 'smo', 'Solyc01g091280.3' => 'sly', 'Solyc05g047610.3' => 'sly', 'Solyc05g047640.3' => 'sly', 'Solyc05g055630.3' => 'sly', 'Solyc10g018160.2' => 'sly', 'Solyc10g084820.2' => 'sly', 'Solyc10g086565.2' => 'sly', 'Sopen01g037030' => 'spe', 'Sopen05g027920' => 'spe', 'Sopen05g034070' => 'spe', 'Sopen10g007260' => 'spe', 'Sopen10g034260' => 'spe', 'Sopen10g035950' => 'spe', 'Sp3g07710' => 'spa', 'Sp4g27420' => 'spa', 'Sp5g02450' => 'spa', 'Sp6g01280' => 'spa', 'Sp6g38480' => 'spa', 'Sp7g20780' => 'spa', 'TAR374G1413' => 'tar', 'TAR623G1777' => 'tar', 'TAR629G2370' => 'tar', 'TAR633G1759' => 'tar', 'TAR636G3387' => 'tar', 'THA.LOC104802447' => 'tha', 'THA.LOC104813916' => 'tha', 'THA.LOC104816423' => 'tha', 'THA.LOC104817246' => 'tha', 'THA.LOC104825895' => 'tha', 'Thecc.01G335200' => 'tca', 'Thecc.01G377400' => 'tca', 'Thecc.03G262200' => 'tca', 'Thecc.05G036800' => 'tca', 'Thecc.10G080500' => 'tca', 'Thecc.10G080800' => 'tca', 'Thhalv10001560m.g' => 'esa', 'Thhalv10006120m.g' => 'esa', 'Thhalv10014375m.g' => 'esa', 'Thhalv10021264m.g' => 'esa', 'Thhalv10028856m.g' => 'esa', 'TPR.G1914' => 'tpr', 'TPR.G4757' => 'tpr', 'TPR.G5595' => 'tpr', 'TWI14G0952' => 'twi', 'TWI14G1307' => 'twi', 'TWI38G2143' => 'twi', 'TWI59G0826' => 'twi', 'TWI77G0527' => 'twi', 'TWI81G0150' => 'twi', 'unitig_21.g21018' => 'ugi', 'unitig_26.g9725' => 'ugi', 'unitig_744.g24653' => 'ugi', 'unitig_749.g13778' => 'ugi', 'unitig_899.g15035' => 'ugi', 'vmacro04296' => 'vma', 'vmacro04852' => 'vma', 'vmacro13404' => 'vma', 'vmacro20169' => 'vma', 'vmacro21014' => 'vma', 'VMungo0331G0237' => 'vmu', 'VMungo0331G0706' => 'vmu', 'VMungo0331G1361' => 'vmu', 'VMungo0331G1489' => 'vmu', 'VMungo0540G1037' => 'vmu', 'VMungo0720G2487' => 'vmu', 'VMungo0720G2721' => 'vmu', 'Zm00001eb086860' => 'zma', 'Zm00001eb104760' => 'zma', 'Zm00001eb148220' => 'zma', 'Zm00001eb259030' => 'zma', 'Zm00001eb289590' => 'zma', 'Zm00001eb420150' => 'zma' ), 'gf_id' => 'HOM05D000968', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000968' ), 'data_identifier' => 'HOM05D000968', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000968', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p31690' => 'bna', 'A03p36040' => 'bna', 'A03p53730' => 'bna', 'A04p01410' => 'bna', 'A05p05420' => 'bna', 'A05p39630' => 'bna', 'A05p39640' => 'bna', 'A09p00970' => 'bna', 'A09p53060' => 'bna', 'A10p31890' => 'bna', 'Aa31LG10G15040' => 'aar', 'Aa31LG1G21090' => 'aar', 'Aa31LG1G26900' => 'aar', 'Aa31LG3G1820' => 'aar', 'Aa31LG5G1100' => 'aar', 'Aa31LG6G4740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2265' => 'aag', 'Actinidia07998' => 'ach', 'Actinidia11266' => 'ach', 'Actinidia12682' => 'ach', 'Actinidia26479' => 'ach', 'Actinidia31406' => 'ach', 'Actinidia32437' => 'ach', 'Actinidia38862' => 'ach', 'Ah.05g174230' => 'amhyb', 'Ah.05g179070' => 'amhyb', 'Ah.05g179090' => 'amhyb', 'Ah.12g059950' => 'amhyb', 'AL3G20480' => 'aly', 'AL4G44520' => 'aly', 'AL5G43110' => 'aly', 'AL6G13890' => 'aly', 'AL6G52620' => 'aly', 'AL7G30830' => 'aly', 'Aqoxy1G00899' => 'aox', 'Aqoxy5G04333' => 'aox', 'Aqoxy7G00641' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3IZ0NN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4EF6AW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W9P8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79GA3M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C43NQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFCU6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G95YVJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCHK29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LU1UG8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX91RN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGB4B1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8DA0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9H7JI' => 'arhy', 'AT3G09320' => 'ath', 'AT3G60800' => 'ath', 'AT4G00840' => 'ath', 'AT4G22750' => 'ath', 'AT5G04270' => 'ath', 'ATR0090G003' => 'atr', 'ATR0559G349' => 'atr', 'ATR0680G261' => 'atr', 'ATR0810G048' => 'atr', 'Atru.chr12.831' => 'acertr', 'Atru.chr5.303' => 'acertr', 'Atru.chr5.748' => 'acertr', 'Atru.chr8.1999' => 'acertr', 'Atru.chr9.1436' => 'acertr', 'AUR62004211' => 'cqu', 'AUR62004548' => 'cqu', 'AUR62013637' => 'cqu', 'AUR62022662' => 'cqu', 'AUR62025777' => 'cqu', 'AUR62042386' => 'cqu', 'BcaB01g02310' => 'bca', 'BcaB01g06062' => 'bca', 'BcaB02g08975' => 'bca', 'BcaB02g08980' => 'bca', 'BcaC01g04228' => 'bca', 'BcaC01g06830' => 'bca', 'BcaC02g10186' => 'bca', 'BcaC02g12214' => 'bca', 'BcaC04g24101' => 'bca', 'BcaC05g29520' => 'bca', 'BcaC05g29661' => 'bca', 'BcaC06g32130' => 'bca', 'BcaC06g32131' => 'bca', 'BcaC07g40601' => 'bca', 'BcaC07g42641' => 'bca', 'BcaNung01038' => 'bca', 'BcaNung01676' => 'bca', 'BcaNung02480' => 'bca', 'BcaNung07376' => 'bca', 'BolC3t16146H' => 'bol', 'BolC3t16637H' => 'bol', 'BolC4t22257H' => 'bol', 'BolC4t24728H' => 'bol', 'BolC5t34517H' => 'bol', 'BolC7t45703H' => 'bol', 'BolC8t51166H' => 'bol', 'BolC9t53038H' => 'bol', 'BolC9t60000H' => 'bol', 'BraA01t01345Z' => 'bra', 'BraA01t01346Z' => 'bra', 'BraA01t01348Z' => 'bra', 'BraA03t12347Z' => 'bra', 'BraA03t12775Z' => 'bra', 'BraA03t14439Z' => 'bra', 'BraA04t15860Z' => 'bra', 'BraA05t19511Z' => 'bra', 'BraA05t22746Z' => 'bra', 'BraA09t35767Z' => 'bra', 'BraA09t40732Z' => 'bra', 'BraA10t45233Z' => 'bra', 'C03p38720' => 'bna', 'C03p43680' => 'bna', 'C04p06350' => 'bna', 'C04p31800' => 'bna', 'C05p58680' => 'bna', 'C07p52110' => 'bna', 'C08p35760' => 'bna', 'C09p01050' => 'bna', 'C09p72600' => 'bna', 'CAN.G106.2' => 'can', 'CAN.G1482.1' => 'can', 'CAN.G324.12' => 'can', 'CAN.G388.20' => 'can', 'CAN.G412.7' => 'can', 'CAN.G694.32' => 'can', 'CAN.G92.12' => 'can', 'CANSAT11G2353' => 'cansat', 'CANSAT21G1398' => 'cansat', 'CANSAT56G2456' => 'cansat', 'CANSAT56G3031' => 'cansat', 'CANSAT56G4539' => 'cansat', 'CARHR083680' => 'chi', 'CARHR171190' => 'chi', 'CARHR209010' => 'chi', 'CARHR229680' => 'chi', 'CARHR249490' => 'chi', 'Carub.0003s0844' => 'cru', 'Carub.0005s2755' => 'cru', 'Carub.0006s0322' => 'cru', 'Carub.0006s3586' => 'cru', 'Carub.0007s1855' => 'cru', 'Ca_07808_v3' => 'car', 'Ca_09535_v3' => 'car', 'Ca_10548_v3' => 'car', 'Ca_19913_v3' => 'car', 'Ca_19916_v3' => 'car', 'Ca_19975_v3' => 'car', 'CBR_g22876' => 'cbr', 'CBR_g22879' => 'cbr', 'CBR_g38491' => 'cbr', 'CBR_g54185' => 'cbr', 'CBR_g54190' => 'cbr', 'Cc02_g11020' => 'ccan', 'Cc02_g23920' => 'ccan', 'Cc02_g39860' => 'ccan', 'Cc02_g39870' => 'ccan', 'Cc03_g06760' => 'ccan', 'Cc06_g02450' => 'ccan', 'Cc09_g09450' => 'ccan', 'CDE02G1959' => 'cde', 'CDE04G0600' => 'cde', 'CDE07G1996' => 'cde', 'CDE07G2078' => 'cde', 'CDE11G0611' => 'cde', 'Cfa001683' => 'cfa', 'Cfa001734' => 'cfa', 'Cfa001737' => 'cfa', 'Cfa003751' => 'cfa', 'Cfa012019' => 'cfa', 'Cfa017353' => 'cfa', 'Cfa017732' => 'cfa', 'Cfa022464' => 'cfa', 'Ciclev10012400m.g' => 'ccl', 'Ciclev10021242m.g' => 'ccl', 'Ciclev10021302m.g' => 'ccl', 'Ciclev10021463m.g' => 'ccl', 'Ciclev10032359m.g' => 'ccl', 'CiPaw.01G081000' => 'cil', 'CiPaw.01G262500' => 'cil', 'CiPaw.01G269800' => 'cil', 'CiPaw.02G168400' => 'cil', 'CiPaw.05G119500' => 'cil', 'CiPaw.11G147300' => 'cil', 'ClCG01G003630' => 'cla', 'ClCG05G000510' => 'cla', 'ClCG05G002300' => 'cla', 'ClCG08G007650' => 'cla', 'ClCG10G021250' => 'cla', 'COL.COLO4_06218' => 'col', 'COL.COLO4_12538' => 'col', 'COL.COLO4_14775' => 'col', 'COL.COLO4_23875' => 'col', 'Cpa.g.sc141.16' => 'cpa', 'Cpa.g.sc169.16' => 'cpa', 'Cpa.g.sc244.4' => 'cpa', 'Cpa.g.sc244.5' => 'cpa', 'Cpa.g.sc29.87' => 'cpa', 'Cpa.g.sc53.115' => 'cpa', 'Cre03.g207502' => 'cre', 'Cre06.g277000' => 'cre', 'Cre09.g394050' => 'cre', 'CsaV3_3G007680' => 'csa', 'CsaV3_3G009710' => 'csa', 'CsaV3_3G034790' => 'csa', 'CsaV3_5G003750' => 'csa', 'CsaV3_6G036620' => 'csa', 'CSS0002288' => 'camsi', 'CSS0011250' => 'camsi', 'CSS0021619' => 'camsi', 'CSS0046701' => 'camsi', 'DCAR_006420' => 'dca', 'DCAR_006865' => 'dca', 'DCAR_008558' => 'dca', 'DCAR_028754' => 'dca', 'DCAR_028755' => 'dca', 'Dinv31218' => 'din', 'Dinv32371' => 'din', 'Dinv34250' => 'din', 'Dinv37156' => 'din', 'Dinv43704' => 'din', 'Duzib093G1811' => 'dzi', 'Duzib106G1622' => 'dzi', 'Duzib114G0504' => 'dzi', 'Duzib128G0338' => 'dzi', 'Duzib128G1577' => 'dzi', 'Duzib133G0104' => 'dzi', 'Duzib133G1080' => 'dzi', 'Duzib138G0324' => 'dzi', 'Duzib138G0394' => 'dzi', 'Duzib205G0122' => 'dzi', 'Duzib268G1020' => 'dzi', 'Duzib268G1359' => 'dzi', 'ECA232G3929' => 'eca', 'ECA236G2210' => 'eca', 'ECA236G2287' => 'eca', 'ECA240G4568' => 'eca', 'ECA247G0894' => 'eca', 'EL10Ac1g00200' => 'bvu', 'EL10Ac1g00886' => 'bvu', 'EL10As1g23091' => 'bvu', 'EL10As1g23092' => 'bvu', 'Eucgr.A01284' => 'egr', 'Eucgr.A01285' => 'egr', 'Eucgr.D02456' => 'egr', 'Eucgr.E00018' => 'egr', 'Eucgr.E01439' => 'egr', 'Eucgr.G02859' => 'egr', 'FAN01G0168' => 'fan', 'FAN01G0453' => 'fan', 'FAN01G2761' => 'fan', 'FAN02G1239' => 'fan', 'FAN03G0645' => 'fan', 'FAN03G2707' => 'fan', 'FAN03G2978' => 'fan', 'FAN04G0227' => 'fan', 'FAN06G0091' => 'fan', 'FAN06G1418' => 'fan', 'FAN06G1512' => 'fan', 'FAN06G1986' => 'fan', 'FAN06G2905' => 'fan', 'FAN06G4325' => 'fan', 'FAN08G0033' => 'fan', 'FAN09G0642' => 'fan', 'FAN10G1763' => 'fan', 'FAN10G2026' => 'fan', 'FAN10G2513' => 'fan', 'FAN10G3402' => 'fan', 'FAN10G3564' => 'fan', 'FAN10G3987' => 'fan', 'FAN13G1490' => 'fan', 'FAN14G5857' => 'fan', 'FAN18G1188' => 'fan', 'FvH4_5g00750' => 'fve', 'FvH4_6g13410' => 'fve', 'FvH4_7g11740' => 'fve', 'FvH4_7g17410' => 'fve', 'FvH4_7g18860' => 'fve', 'Glyma.01G099100' => 'gma', 'Glyma.01G142300' => 'gma', 'Glyma.03G025500' => 'gma', 'Glyma.03G069700' => 'gma', 'Glyma.03G260000' => 'gma', 'Glyma.09G269800' => 'gma', 'Glyma.10G208700' => 'gma', 'Glyma.18G220400' => 'gma', 'Glyma.20G182000' => 'gma', 'Gohir.A01G221726' => 'ghi', 'Gohir.A07G134600' => 'ghi', 'Gohir.A07G146000' => 'ghi', 'Gohir.A08G173900' => 'ghi', 'Gohir.A09G194900' => 'ghi', 'Gohir.A10G204100' => 'ghi', 'Gohir.A11G080600' => 'ghi', 'Gohir.A11G327500' => 'ghi', 'Gohir.A12G101800' => 'ghi', 'Gohir.D01G211200' => 'ghi', 'Gohir.D07G139200' => 'ghi', 'Gohir.D07G152100' => 'ghi', 'Gohir.D08G192600' => 'ghi', 'Gohir.D09G189200' => 'ghi', 'Gohir.D10G212000' => 'ghi', 'Gohir.D11G085200' => 'ghi', 'Gohir.D11G346400' => 'ghi', 'Gohir.D12G104800' => 'ghi', 'Gorai.001G151300' => 'gra', 'Gorai.001G174100' => 'gra', 'Gorai.002G257000' => 'gra', 'Gorai.004G202600' => 'gra', 'Gorai.007G090900' => 'gra', 'Gorai.007G376700' => 'gra', 'Gorai.008G114100' => 'gra', 'Gorai.011G237900' => 'gra', 'GSVIVG01005450001' => 'vvi', 'GSVIVG01016232001' => 'vvi', 'GSVIVG01026157001' => 'vvi', 'GSVIVG01027419001' => 'vvi', 'GSVIVG01027631001' => 'vvi', 'GSVIVG01034143001' => 'vvi', 'HanXRQChr03g0093921' => 'han', 'HanXRQChr04g0120001' => 'han', 'HanXRQChr04g0122561' => 'han', 'HanXRQChr09g0246851' => 'han', 'HanXRQChr10g0293311' => 'han', 'HanXRQChr13g0425231' => 'han', 'HanXRQChr16g0532571' => 'han', 'Haze_09050' => 'cav', 'Haze_15715' => 'cav', 'Haze_15716' => 'cav', 'Haze_16803' => 'cav', 'Haze_16850' => 'cav', 'Hma1.2p1_0301F.1_g118655' => 'hma', 'Hma1.2p1_0309F.1_g120590' => 'hma', 'Hma1.2p1_0936F.1_g238900' => 'hma', 'Hma1.2p1_3552F.1_g336740' => 'hma', 'HPP92_003520' => 'vpl', 'HPP92_006628' => 'vpl', 'HPP92_006645' => 'vpl', 'HPP92_014669' => 'vpl', 'HPP92_015077' => 'vpl', 'Hund16742' => 'sun', 'Hund17022' => 'sun', 'Lalb_Chr02g0152131' => 'lal', 'Lalb_Chr05g0225371' => 'lal', 'Lalb_Chr07g0189841' => 'lal', 'Lalb_Chr07g0192961' => 'lal', 'Lalb_Chr12g0208221' => 'lal', 'Lalb_Chr13g0291211' => 'lal', 'Lalb_Chr13g0291781' => 'lal', 'Lalb_Chr18g0044651' => 'lal', 'Lalb_Chr21g0313731' => 'lal', 'Lj1g0022533' => 'lja', 'Lj2A18T50' => 'lonja', 'Lj2A92G93' => 'lonja', 'Lj3A965T73' => 'lonja', 'Lj3g0000673' => 'lja', 'Lj3g0002666' => 'lja', 'Lj4g0016985' => 'lja', 'Lj5g0003625' => 'lja', 'Lj7A529G36' => 'lonja', 'Lj9A569T49' => 'lonja', 'Lj9A604T63' => 'lonja', 'Lsat_1_v5_gn_3_132060' => 'lsa', 'Lsat_1_v5_gn_4_68941' => 'lsa', 'Lsat_1_v5_gn_5_95580' => 'lsa', 'Lsat_1_v5_gn_7_161' => 'lsa', 'Lsat_1_v5_gn_7_7041' => 'lsa', 'Lsat_1_v5_gn_9_33481' => 'lsa', 'Lsat_1_v5_gn_9_68260' => 'lsa', 'Manes.01G073100' => 'mes', 'Manes.01G266300' => 'mes', 'Manes.02G033300' => 'mes', 'Manes.05G017900' => 'mes', 'Manes.05G046100' => 'mes', 'Manes.08G080900' => 'mes', 'Manes.10G049400' => 'mes', 'Mapoly0009s0186' => 'mpo', 'Mapoly0036s0118' => 'mpo', 'Mapoly0101s0046' => 'mpo', 'MBI04_g30218_MAGBIO' => 'mbi', 'MBI04_g35564_MAGBIO' => 'mbi', 'MBI12_g34011_MAGBIO' => 'mbi', 'MBI14_g04655_MAGBIO' => 'mbi', 'MCO07G653' => 'mco', 'MCO10G173' => 'mco', 'MD01G1087100' => 'mdo', 'MD01G1104200' => 'mdo', 'MD02G1205100' => 'mdo', 'MD04G1079200' => 'mdo', 'MD04G1131400' => 'mdo', 'MD07G1121600' => 'mdo', 'MD07G1157300' => 'mdo', 'MD07G1171000' => 'mdo', 'MD12G1144500' => 'mdo', 'Medtr1g094610' => 'mtr', 'Medtr4g021795' => 'mtr', 'Medtr4g023760' => 'mtr', 'Medtr7g118050' => 'mtr', 'MELO3C005582.2' => 'cme', 'MELO3C005989.2' => 'cme', 'MELO3C006192.2' => 'cme', 'MELO3C009248.2' => 'cme', 'MELO3C019817.2' => 'cme', 'Migut.B01625' => 'egut', 'Migut.B01915' => 'egut', 'Migut.F01721' => 'egut', 'Migut.J00314' => 'egut', 'MSTRG.20742' => 'ama', 'MSTRG.8134' => 'ama', 'Nitab4.5_0000096g0010' => 'nta', 'Nitab4.5_0000202g0030' => 'nta', 'Nitab4.5_0000216g0370' => 'nta', 'Nitab4.5_0000457g0230' => 'nta', 'Nitab4.5_0001702g0170' => 'nta', 'Nitab4.5_0003607g0010' => 'nta', 'Nitab4.5_0004917g0020' => 'nta', 'Nitab4.5_0007059g0010' => 'nta', 'Nitab4.5_0007184g0010' => 'nta', 'Nitab4.5_0007346g0020' => 'nta', 'Nn1g00410' => 'nnu', 'Nn1g01252' => 'nnu', 'Nn2g11168' => 'nnu', 'Nn2g13403' => 'nnu', 'Nn2g13760' => 'nnu', 'Nn4g26380' => 'nnu', 'Oeu000806.2' => 'oeu', 'Oeu005788.1' => 'oeu', 'Oeu006900.3' => 'oeu', 'Oeu007797.1' => 'oeu', 'Oeu011932.1' => 'oeu', 'Oeu022739.1' => 'oeu', 'Oeu037918.1' => 'oeu', 'Oeu055490.2' => 'oeu', 'Os01g0844400' => 'osa', 'Os02g0819100' => 'osa', 'Os03g0804300' => 'osa', 'Os05g0458000' => 'osa', 'Os07g0467800' => 'osa', 'Os12g0602200' => 'osa', 'Peaxi162Scf00013g03444' => 'pax', 'Peaxi162Scf00094g01120' => 'pax', 'Peaxi162Scf00191g01211' => 'pax', 'Peaxi162Scf00238g01110' => 'pax', 'Peaxi162Scf00330g00719' => 'pax', 'Peaxi162Scf00627g00018' => 'pax', 'PGR031G2686' => 'pgr', 'PGR042G0809' => 'pgr', 'PGR142G0193' => 'pgr', 'PGSC0003DMG400011066' => 'stu', 'PGSC0003DMG400012041' => 'stu', 'PGSC0003DMG400013678' => 'stu', 'PGSC0003DMG400023477' => 'stu', 'PGSC0003DMG400025956' => 'stu', 'PGSC0003DMG401019151' => 'stu', 'Phvul.006G116400' => 'pvu', 'Phvul.007G097300' => 'pvu', 'Phvul.010G015000' => 'pvu', 'Phvul.010G083900' => 'pvu', 'Potri.001G117100' => 'ptr', 'Potri.002G147300' => 'ptr', 'Potri.003G115600' => 'ptr', 'Potri.006G087400' => 'ptr', 'Potri.010G226100' => 'ptr', 'Potri.014G069200' => 'ptr', 'Potri.014G104000' => 'ptr', 'Potri.016G100200' => 'ptr', 'Pp3c10_20450' => 'ppa', 'Pp3c1_42400' => 'ppa', 'Pp3c3_24390' => 'ppa', 'Pp3c3_2860' => 'ppa', 'PRCOL_00003193' => 'pco', 'Prupe.2G144500' => 'ppe', 'Prupe.2G195700' => 'ppe', 'Prupe.2G209800' => 'ppe', 'Prupe.5G080000' => 'ppe', 'Prupe.6G257900' => 'ppe', 'Psat3g001160' => 'psa', 'Psat6g181880' => 'psa', 'Psat7g233720' => 'psa', 'PSO063G7587' => 'pso', 'PSO339G2145' => 'pso', 'PSO339G3369' => 'pso', 'PSO478G2747' => 'pso', 'PSO513G0140' => 'pso', 'PSO782G1614' => 'pso', 'PSO782G4889' => 'pso', 'PSO782G5485' => 'pso', 'PSO801G0241' => 'pso', 'QL07p048854' => 'qlo', 'QL08p046745' => 'qlo', 'QL08p052606' => 'qlo', 'QL08p053414' => 'qlo', 'QL08p054868' => 'qlo', 'RcHm_v2.0_Chr1g0350251' => 'rch', 'RcHm_v2.0_Chr1g0360851' => 'rch', 'RcHm_v2.0_Chr1g0362791' => 'rch', 'RcHm_v2.0_Chr3g0466281' => 'rch', 'RcHm_v2.0_Chr7g0201481' => 'rch', 'Rhsim01G0148600' => 'rsi', 'Rhsim05G0194400' => 'rsi', 'Rhsim07G0000700' => 'rsi', 'Rhsim07G0000800' => 'rsi', 'Rhsim07G0027900' => 'rsi', 'Rhsim09G0149500' => 'rsi', 'RhsimUnG0186900' => 'rsi', 'Sabra01G0089900' => 'sbr', 'Sabra02G0114700' => 'sbr', 'Sabra02G0116300' => 'sbr', 'Sabra03G0080100' => 'sbr', 'Sabra08G0024300' => 'sbr', 'Sabra10G0174300' => 'sbr', 'Sabra14G0048900' => 'sbr', 'Sabra14G0076500' => 'sbr', 'SalBow5G2513' => 'sbo', 'Sc01g0002300' => 'sci', 'Sc01g0004450' => 'sci', 'Sc06g0001680' => 'sci', 'Sc23g0003580' => 'sci', 'Sed0000913' => 'sed', 'Sed0001655' => 'sed', 'Sed0007745' => 'sed', 'Sed0010951' => 'sed', 'Sed0017599' => 'sed', 'Sed0021405' => 'sed', 'Sed0022810' => 'sed', 'SEGI_07099' => 'sgi', 'SEGI_11931' => 'sgi', 'SEGI_13187' => 'sgi', 'SEGI_29958' => 'sgi', 'SEGI_36351' => 'sgi', 'SGA_v2.0_scaffold126G33770' => 'sas', 'SGA_v2.0_scaffold153G37003' => 'sas', 'SGA_v2.0_scaffold2G01359' => 'sas', 'SGA_v2.0_scaffold5G03064' => 'sas', 'SGA_v2.0_scaffold95G28903' => 'sas', 'SHI12701' => 'shi', 'SHI26410' => 'shi', 'SHI38997' => 'shi', 'SHI53759' => 'shi', 'SHI53886' => 'shi', 'SHI54714' => 'shi', 'SMO011G0041' => 'smo', 'SMO146G0251' => 'smo', 'SMO160G0004' => 'smo', 'SMO174G0057' => 'smo', 'SMO244G0089' => 'smo', 'SMO296G0011' => 'smo', 'Solyc01g091280.3' => 'sly', 'Solyc05g047610.3' => 'sly', 'Solyc05g047640.3' => 'sly', 'Solyc05g055630.3' => 'sly', 'Solyc10g018160.2' => 'sly', 'Solyc10g084820.2' => 'sly', 'Solyc10g086565.2' => 'sly', 'Sopen01g037030' => 'spe', 'Sopen05g027920' => 'spe', 'Sopen05g034070' => 'spe', 'Sopen10g007260' => 'spe', 'Sopen10g034260' => 'spe', 'Sopen10g035950' => 'spe', 'Sp3g07710' => 'spa', 'Sp4g27420' => 'spa', 'Sp5g02450' => 'spa', 'Sp6g01280' => 'spa', 'Sp6g38480' => 'spa', 'Sp7g20780' => 'spa', 'TAR374G1413' => 'tar', 'TAR623G1777' => 'tar', 'TAR629G2370' => 'tar', 'TAR633G1759' => 'tar', 'TAR636G3387' => 'tar', 'THA.LOC104802447' => 'tha', 'THA.LOC104813916' => 'tha', 'THA.LOC104816423' => 'tha', 'THA.LOC104817246' => 'tha', 'THA.LOC104825895' => 'tha', 'Thecc.01G335200' => 'tca', 'Thecc.01G377400' => 'tca', 'Thecc.03G262200' => 'tca', 'Thecc.05G036800' => 'tca', 'Thecc.10G080500' => 'tca', 'Thecc.10G080800' => 'tca', 'Thhalv10001560m.g' => 'esa', 'Thhalv10006120m.g' => 'esa', 'Thhalv10014375m.g' => 'esa', 'Thhalv10021264m.g' => 'esa', 'Thhalv10028856m.g' => 'esa', 'TPR.G1914' => 'tpr', 'TPR.G4757' => 'tpr', 'TPR.G5595' => 'tpr', 'TWI14G0952' => 'twi', 'TWI14G1307' => 'twi', 'TWI38G2143' => 'twi', 'TWI59G0826' => 'twi', 'TWI77G0527' => 'twi', 'TWI81G0150' => 'twi', 'unitig_21.g21018' => 'ugi', 'unitig_26.g9725' => 'ugi', 'unitig_744.g24653' => 'ugi', 'unitig_749.g13778' => 'ugi', 'unitig_899.g15035' => 'ugi', 'vmacro04296' => 'vma', 'vmacro04852' => 'vma', 'vmacro13404' => 'vma', 'vmacro20169' => 'vma', 'vmacro21014' => 'vma', 'VMungo0331G0237' => 'vmu', 'VMungo0331G0706' => 'vmu', 'VMungo0331G1361' => 'vmu', 'VMungo0331G1489' => 'vmu', 'VMungo0540G1037' => 'vmu', 'VMungo0720G2487' => 'vmu', 'VMungo0720G2721' => 'vmu', 'Zm00001eb086860' => 'zma', 'Zm00001eb104760' => 'zma', 'Zm00001eb148220' => 'zma', 'Zm00001eb259030' => 'zma', 'Zm00001eb289590' => 'zma', 'Zm00001eb420150' => 'zma' ) $gf_id = 'HOM05D000968' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000968' ) $data_identifier = 'HOM05D000968' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 19, 'bol' => (int) 9, 'bra' => (int) 12, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 5, 'ccan' => (int) 7, 'cde' => (int) 5, 'cfa' => (int) 8, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 4, 'dca' => (int) 5, 'din' => (int) 5, 'dzi' => (int) 12, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 25, 'fve' => (int) 5, 'gma' => (int) 9, 'ghi' => (int) 18, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 7, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 5, 'sun' => (int) 2, 'lal' => (int) 9, 'lja' => (int) 5, 'lonja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 9, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 2, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 3, 'stu' => (int) 6, 'pvu' => (int) 4, 'ptr' => (int) 8, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 3, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 1, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 5, 'sas' => (int) 5, 'shi' => (int) 6, 'smo' => (int) 6, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 3, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420150' $species_info = array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ) $local_species = 'smo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000968', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p31690' => 'bna', 'A03p36040' => 'bna', 'A03p53730' => 'bna', 'A04p01410' => 'bna', 'A05p05420' => 'bna', 'A05p39630' => 'bna', 'A05p39640' => 'bna', 'A09p00970' => 'bna', 'A09p53060' => 'bna', 'A10p31890' => 'bna', 'Aa31LG10G15040' => 'aar', 'Aa31LG1G21090' => 'aar', 'Aa31LG1G26900' => 'aar', 'Aa31LG3G1820' => 'aar', 'Aa31LG5G1100' => 'aar', 'Aa31LG6G4740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2265' => 'aag', 'Actinidia07998' => 'ach', 'Actinidia11266' => 'ach', 'Actinidia12682' => 'ach', 'Actinidia26479' => 'ach', 'Actinidia31406' => 'ach', 'Actinidia32437' => 'ach', 'Actinidia38862' => 'ach', 'Ah.05g174230' => 'amhyb', 'Ah.05g179070' => 'amhyb', 'Ah.05g179090' => 'amhyb', 'Ah.12g059950' => 'amhyb', 'AL3G20480' => 'aly', 'AL4G44520' => 'aly', 'AL5G43110' => 'aly', 'AL6G13890' => 'aly', 'AL6G52620' => 'aly', 'AL7G30830' => 'aly', 'Aqoxy1G00899' => 'aox', 'Aqoxy5G04333' => 'aox', 'Aqoxy7G00641' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3IZ0NN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4EF6AW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W9P8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79GA3M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C43NQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFCU6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G95YVJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCHK29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LU1UG8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX91RN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGB4B1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8DA0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9H7JI' => 'arhy', 'AT3G09320' => 'ath', 'AT3G60800' => 'ath', 'AT4G00840' => 'ath', 'AT4G22750' => 'ath', 'AT5G04270' => 'ath', 'ATR0090G003' => 'atr', 'ATR0559G349' => 'atr', 'ATR0680G261' => 'atr', 'ATR0810G048' => 'atr', 'Atru.chr12.831' => 'acertr', 'Atru.chr5.303' => 'acertr', 'Atru.chr5.748' => 'acertr', 'Atru.chr8.1999' => 'acertr', 'Atru.chr9.1436' => 'acertr', 'AUR62004211' => 'cqu', 'AUR62004548' => 'cqu', 'AUR62013637' => 'cqu', 'AUR62022662' => 'cqu', 'AUR62025777' => 'cqu', 'AUR62042386' => 'cqu', 'BcaB01g02310' => 'bca', 'BcaB01g06062' => 'bca', 'BcaB02g08975' => 'bca', 'BcaB02g08980' => 'bca', 'BcaC01g04228' => 'bca', 'BcaC01g06830' => 'bca', 'BcaC02g10186' => 'bca', 'BcaC02g12214' => 'bca', 'BcaC04g24101' => 'bca', 'BcaC05g29520' => 'bca', 'BcaC05g29661' => 'bca', 'BcaC06g32130' => 'bca', 'BcaC06g32131' => 'bca', 'BcaC07g40601' => 'bca', 'BcaC07g42641' => 'bca', 'BcaNung01038' => 'bca', 'BcaNung01676' => 'bca', 'BcaNung02480' => 'bca', 'BcaNung07376' => 'bca', 'BolC3t16146H' => 'bol', 'BolC3t16637H' => 'bol', 'BolC4t22257H' => 'bol', 'BolC4t24728H' => 'bol', 'BolC5t34517H' => 'bol', 'BolC7t45703H' => 'bol', 'BolC8t51166H' => 'bol', 'BolC9t53038H' => 'bol', 'BolC9t60000H' => 'bol', 'BraA01t01345Z' => 'bra', 'BraA01t01346Z' => 'bra', 'BraA01t01348Z' => 'bra', 'BraA03t12347Z' => 'bra', 'BraA03t12775Z' => 'bra', 'BraA03t14439Z' => 'bra', 'BraA04t15860Z' => 'bra', 'BraA05t19511Z' => 'bra', 'BraA05t22746Z' => 'bra', 'BraA09t35767Z' => 'bra', 'BraA09t40732Z' => 'bra', 'BraA10t45233Z' => 'bra', 'C03p38720' => 'bna', 'C03p43680' => 'bna', 'C04p06350' => 'bna', 'C04p31800' => 'bna', 'C05p58680' => 'bna', 'C07p52110' => 'bna', 'C08p35760' => 'bna', 'C09p01050' => 'bna', 'C09p72600' => 'bna', 'CAN.G106.2' => 'can', 'CAN.G1482.1' => 'can', 'CAN.G324.12' => 'can', 'CAN.G388.20' => 'can', 'CAN.G412.7' => 'can', 'CAN.G694.32' => 'can', 'CAN.G92.12' => 'can', 'CANSAT11G2353' => 'cansat', 'CANSAT21G1398' => 'cansat', 'CANSAT56G2456' => 'cansat', 'CANSAT56G3031' => 'cansat', 'CANSAT56G4539' => 'cansat', 'CARHR083680' => 'chi', 'CARHR171190' => 'chi', 'CARHR209010' => 'chi', 'CARHR229680' => 'chi', 'CARHR249490' => 'chi', 'Carub.0003s0844' => 'cru', 'Carub.0005s2755' => 'cru', 'Carub.0006s0322' => 'cru', 'Carub.0006s3586' => 'cru', 'Carub.0007s1855' => 'cru', 'Ca_07808_v3' => 'car', 'Ca_09535_v3' => 'car', 'Ca_10548_v3' => 'car', 'Ca_19913_v3' => 'car', 'Ca_19916_v3' => 'car', 'Ca_19975_v3' => 'car', 'CBR_g22876' => 'cbr', 'CBR_g22879' => 'cbr', 'CBR_g38491' => 'cbr', 'CBR_g54185' => 'cbr', 'CBR_g54190' => 'cbr', 'Cc02_g11020' => 'ccan', 'Cc02_g23920' => 'ccan', 'Cc02_g39860' => 'ccan', 'Cc02_g39870' => 'ccan', 'Cc03_g06760' => 'ccan', 'Cc06_g02450' => 'ccan', 'Cc09_g09450' => 'ccan', 'CDE02G1959' => 'cde', 'CDE04G0600' => 'cde', 'CDE07G1996' => 'cde', 'CDE07G2078' => 'cde', 'CDE11G0611' => 'cde', 'Cfa001683' => 'cfa', 'Cfa001734' => 'cfa', 'Cfa001737' => 'cfa', 'Cfa003751' => 'cfa', 'Cfa012019' => 'cfa', 'Cfa017353' => 'cfa', 'Cfa017732' => 'cfa', 'Cfa022464' => 'cfa', 'Ciclev10012400m.g' => 'ccl', 'Ciclev10021242m.g' => 'ccl', 'Ciclev10021302m.g' => 'ccl', 'Ciclev10021463m.g' => 'ccl', 'Ciclev10032359m.g' => 'ccl', 'CiPaw.01G081000' => 'cil', 'CiPaw.01G262500' => 'cil', 'CiPaw.01G269800' => 'cil', 'CiPaw.02G168400' => 'cil', 'CiPaw.05G119500' => 'cil', 'CiPaw.11G147300' => 'cil', 'ClCG01G003630' => 'cla', 'ClCG05G000510' => 'cla', 'ClCG05G002300' => 'cla', 'ClCG08G007650' => 'cla', 'ClCG10G021250' => 'cla', 'COL.COLO4_06218' => 'col', 'COL.COLO4_12538' => 'col', 'COL.COLO4_14775' => 'col', 'COL.COLO4_23875' => 'col', 'Cpa.g.sc141.16' => 'cpa', 'Cpa.g.sc169.16' => 'cpa', 'Cpa.g.sc244.4' => 'cpa', 'Cpa.g.sc244.5' => 'cpa', 'Cpa.g.sc29.87' => 'cpa', 'Cpa.g.sc53.115' => 'cpa', 'Cre03.g207502' => 'cre', 'Cre06.g277000' => 'cre', 'Cre09.g394050' => 'cre', 'CsaV3_3G007680' => 'csa', 'CsaV3_3G009710' => 'csa', 'CsaV3_3G034790' => 'csa', 'CsaV3_5G003750' => 'csa', 'CsaV3_6G036620' => 'csa', 'CSS0002288' => 'camsi', 'CSS0011250' => 'camsi', 'CSS0021619' => 'camsi', 'CSS0046701' => 'camsi', 'DCAR_006420' => 'dca', 'DCAR_006865' => 'dca', 'DCAR_008558' => 'dca', 'DCAR_028754' => 'dca', 'DCAR_028755' => 'dca', 'Dinv31218' => 'din', 'Dinv32371' => 'din', 'Dinv34250' => 'din', 'Dinv37156' => 'din', 'Dinv43704' => 'din', 'Duzib093G1811' => 'dzi', 'Duzib106G1622' => 'dzi', 'Duzib114G0504' => 'dzi', 'Duzib128G0338' => 'dzi', 'Duzib128G1577' => 'dzi', 'Duzib133G0104' => 'dzi', 'Duzib133G1080' => 'dzi', 'Duzib138G0324' => 'dzi', 'Duzib138G0394' => 'dzi', 'Duzib205G0122' => 'dzi', 'Duzib268G1020' => 'dzi', 'Duzib268G1359' => 'dzi', 'ECA232G3929' => 'eca', 'ECA236G2210' => 'eca', 'ECA236G2287' => 'eca', 'ECA240G4568' => 'eca', 'ECA247G0894' => 'eca', 'EL10Ac1g00200' => 'bvu', 'EL10Ac1g00886' => 'bvu', 'EL10As1g23091' => 'bvu', 'EL10As1g23092' => 'bvu', 'Eucgr.A01284' => 'egr', 'Eucgr.A01285' => 'egr', 'Eucgr.D02456' => 'egr', 'Eucgr.E00018' => 'egr', 'Eucgr.E01439' => 'egr', 'Eucgr.G02859' => 'egr', 'FAN01G0168' => 'fan', 'FAN01G0453' => 'fan', 'FAN01G2761' => 'fan', 'FAN02G1239' => 'fan', 'FAN03G0645' => 'fan', 'FAN03G2707' => 'fan', 'FAN03G2978' => 'fan', 'FAN04G0227' => 'fan', 'FAN06G0091' => 'fan', 'FAN06G1418' => 'fan', 'FAN06G1512' => 'fan', 'FAN06G1986' => 'fan', 'FAN06G2905' => 'fan', 'FAN06G4325' => 'fan', 'FAN08G0033' => 'fan', 'FAN09G0642' => 'fan', 'FAN10G1763' => 'fan', 'FAN10G2026' => 'fan', 'FAN10G2513' => 'fan', 'FAN10G3402' => 'fan', 'FAN10G3564' => 'fan', 'FAN10G3987' => 'fan', 'FAN13G1490' => 'fan', 'FAN14G5857' => 'fan', 'FAN18G1188' => 'fan', 'FvH4_5g00750' => 'fve', 'FvH4_6g13410' => 'fve', 'FvH4_7g11740' => 'fve', 'FvH4_7g17410' => 'fve', 'FvH4_7g18860' => 'fve', 'Glyma.01G099100' => 'gma', 'Glyma.01G142300' => 'gma', 'Glyma.03G025500' => 'gma', 'Glyma.03G069700' => 'gma', 'Glyma.03G260000' => 'gma', 'Glyma.09G269800' => 'gma', 'Glyma.10G208700' => 'gma', 'Glyma.18G220400' => 'gma', 'Glyma.20G182000' => 'gma', 'Gohir.A01G221726' => 'ghi', 'Gohir.A07G134600' => 'ghi', 'Gohir.A07G146000' => 'ghi', 'Gohir.A08G173900' => 'ghi', 'Gohir.A09G194900' => 'ghi', 'Gohir.A10G204100' => 'ghi', 'Gohir.A11G080600' => 'ghi', 'Gohir.A11G327500' => 'ghi', 'Gohir.A12G101800' => 'ghi', 'Gohir.D01G211200' => 'ghi', 'Gohir.D07G139200' => 'ghi', 'Gohir.D07G152100' => 'ghi', 'Gohir.D08G192600' => 'ghi', 'Gohir.D09G189200' => 'ghi', 'Gohir.D10G212000' => 'ghi', 'Gohir.D11G085200' => 'ghi', 'Gohir.D11G346400' => 'ghi', 'Gohir.D12G104800' => 'ghi', 'Gorai.001G151300' => 'gra', 'Gorai.001G174100' => 'gra', 'Gorai.002G257000' => 'gra', 'Gorai.004G202600' => 'gra', 'Gorai.007G090900' => 'gra', 'Gorai.007G376700' => 'gra', 'Gorai.008G114100' => 'gra', 'Gorai.011G237900' => 'gra', 'GSVIVG01005450001' => 'vvi', 'GSVIVG01016232001' => 'vvi', 'GSVIVG01026157001' => 'vvi', 'GSVIVG01027419001' => 'vvi', 'GSVIVG01027631001' => 'vvi', 'GSVIVG01034143001' => 'vvi', 'HanXRQChr03g0093921' => 'han', 'HanXRQChr04g0120001' => 'han', 'HanXRQChr04g0122561' => 'han', 'HanXRQChr09g0246851' => 'han', 'HanXRQChr10g0293311' => 'han', 'HanXRQChr13g0425231' => 'han', 'HanXRQChr16g0532571' => 'han', 'Haze_09050' => 'cav', 'Haze_15715' => 'cav', 'Haze_15716' => 'cav', 'Haze_16803' => 'cav', 'Haze_16850' => 'cav', 'Hma1.2p1_0301F.1_g118655' => 'hma', 'Hma1.2p1_0309F.1_g120590' => 'hma', 'Hma1.2p1_0936F.1_g238900' => 'hma', 'Hma1.2p1_3552F.1_g336740' => 'hma', 'HPP92_003520' => 'vpl', 'HPP92_006628' => 'vpl', 'HPP92_006645' => 'vpl', 'HPP92_014669' => 'vpl', 'HPP92_015077' => 'vpl', 'Hund16742' => 'sun', 'Hund17022' => 'sun', 'Lalb_Chr02g0152131' => 'lal', 'Lalb_Chr05g0225371' => 'lal', 'Lalb_Chr07g0189841' => 'lal', 'Lalb_Chr07g0192961' => 'lal', 'Lalb_Chr12g0208221' => 'lal', 'Lalb_Chr13g0291211' => 'lal', 'Lalb_Chr13g0291781' => 'lal', 'Lalb_Chr18g0044651' => 'lal', 'Lalb_Chr21g0313731' => 'lal', 'Lj1g0022533' => 'lja', 'Lj2A18T50' => 'lonja', 'Lj2A92G93' => 'lonja', 'Lj3A965T73' => 'lonja', 'Lj3g0000673' => 'lja', 'Lj3g0002666' => 'lja', 'Lj4g0016985' => 'lja', 'Lj5g0003625' => 'lja', 'Lj7A529G36' => 'lonja', 'Lj9A569T49' => 'lonja', 'Lj9A604T63' => 'lonja', 'Lsat_1_v5_gn_3_132060' => 'lsa', 'Lsat_1_v5_gn_4_68941' => 'lsa', 'Lsat_1_v5_gn_5_95580' => 'lsa', 'Lsat_1_v5_gn_7_161' => 'lsa', 'Lsat_1_v5_gn_7_7041' => 'lsa', 'Lsat_1_v5_gn_9_33481' => 'lsa', 'Lsat_1_v5_gn_9_68260' => 'lsa', 'Manes.01G073100' => 'mes', 'Manes.01G266300' => 'mes', 'Manes.02G033300' => 'mes', 'Manes.05G017900' => 'mes', 'Manes.05G046100' => 'mes', 'Manes.08G080900' => 'mes', 'Manes.10G049400' => 'mes', 'Mapoly0009s0186' => 'mpo', 'Mapoly0036s0118' => 'mpo', 'Mapoly0101s0046' => 'mpo', 'MBI04_g30218_MAGBIO' => 'mbi', 'MBI04_g35564_MAGBIO' => 'mbi', 'MBI12_g34011_MAGBIO' => 'mbi', 'MBI14_g04655_MAGBIO' => 'mbi', 'MCO07G653' => 'mco', 'MCO10G173' => 'mco', 'MD01G1087100' => 'mdo', 'MD01G1104200' => 'mdo', 'MD02G1205100' => 'mdo', 'MD04G1079200' => 'mdo', 'MD04G1131400' => 'mdo', 'MD07G1121600' => 'mdo', 'MD07G1157300' => 'mdo', 'MD07G1171000' => 'mdo', 'MD12G1144500' => 'mdo', 'Medtr1g094610' => 'mtr', 'Medtr4g021795' => 'mtr', 'Medtr4g023760' => 'mtr', 'Medtr7g118050' => 'mtr', 'MELO3C005582.2' => 'cme', 'MELO3C005989.2' => 'cme', 'MELO3C006192.2' => 'cme', 'MELO3C009248.2' => 'cme', 'MELO3C019817.2' => 'cme', 'Migut.B01625' => 'egut', 'Migut.B01915' => 'egut', 'Migut.F01721' => 'egut', 'Migut.J00314' => 'egut', 'MSTRG.20742' => 'ama', 'MSTRG.8134' => 'ama', 'Nitab4.5_0000096g0010' => 'nta', 'Nitab4.5_0000202g0030' => 'nta', 'Nitab4.5_0000216g0370' => 'nta', 'Nitab4.5_0000457g0230' => 'nta', 'Nitab4.5_0001702g0170' => 'nta', 'Nitab4.5_0003607g0010' => 'nta', 'Nitab4.5_0004917g0020' => 'nta', 'Nitab4.5_0007059g0010' => 'nta', 'Nitab4.5_0007184g0010' => 'nta', 'Nitab4.5_0007346g0020' => 'nta', 'Nn1g00410' => 'nnu', 'Nn1g01252' => 'nnu', 'Nn2g11168' => 'nnu', 'Nn2g13403' => 'nnu', 'Nn2g13760' => 'nnu', 'Nn4g26380' => 'nnu', 'Oeu000806.2' => 'oeu', 'Oeu005788.1' => 'oeu', 'Oeu006900.3' => 'oeu', 'Oeu007797.1' => 'oeu', 'Oeu011932.1' => 'oeu', 'Oeu022739.1' => 'oeu', 'Oeu037918.1' => 'oeu', 'Oeu055490.2' => 'oeu', 'Os01g0844400' => 'osa', 'Os02g0819100' => 'osa', 'Os03g0804300' => 'osa', 'Os05g0458000' => 'osa', 'Os07g0467800' => 'osa', 'Os12g0602200' => 'osa', 'Peaxi162Scf00013g03444' => 'pax', 'Peaxi162Scf00094g01120' => 'pax', 'Peaxi162Scf00191g01211' => 'pax', 'Peaxi162Scf00238g01110' => 'pax', 'Peaxi162Scf00330g00719' => 'pax', 'Peaxi162Scf00627g00018' => 'pax', 'PGR031G2686' => 'pgr', 'PGR042G0809' => 'pgr', 'PGR142G0193' => 'pgr', 'PGSC0003DMG400011066' => 'stu', 'PGSC0003DMG400012041' => 'stu', 'PGSC0003DMG400013678' => 'stu', 'PGSC0003DMG400023477' => 'stu', 'PGSC0003DMG400025956' => 'stu', 'PGSC0003DMG401019151' => 'stu', 'Phvul.006G116400' => 'pvu', 'Phvul.007G097300' => 'pvu', 'Phvul.010G015000' => 'pvu', 'Phvul.010G083900' => 'pvu', 'Potri.001G117100' => 'ptr', 'Potri.002G147300' => 'ptr', 'Potri.003G115600' => 'ptr', 'Potri.006G087400' => 'ptr', 'Potri.010G226100' => 'ptr', 'Potri.014G069200' => 'ptr', 'Potri.014G104000' => 'ptr', 'Potri.016G100200' => 'ptr', 'Pp3c10_20450' => 'ppa', 'Pp3c1_42400' => 'ppa', 'Pp3c3_24390' => 'ppa', 'Pp3c3_2860' => 'ppa', 'PRCOL_00003193' => 'pco', 'Prupe.2G144500' => 'ppe', 'Prupe.2G195700' => 'ppe', 'Prupe.2G209800' => 'ppe', 'Prupe.5G080000' => 'ppe', 'Prupe.6G257900' => 'ppe', 'Psat3g001160' => 'psa', 'Psat6g181880' => 'psa', 'Psat7g233720' => 'psa', 'PSO063G7587' => 'pso', 'PSO339G2145' => 'pso', 'PSO339G3369' => 'pso', 'PSO478G2747' => 'pso', 'PSO513G0140' => 'pso', 'PSO782G1614' => 'pso', 'PSO782G4889' => 'pso', 'PSO782G5485' => 'pso', 'PSO801G0241' => 'pso', 'QL07p048854' => 'qlo', 'QL08p046745' => 'qlo', 'QL08p052606' => 'qlo', 'QL08p053414' => 'qlo', 'QL08p054868' => 'qlo', 'RcHm_v2.0_Chr1g0350251' => 'rch', 'RcHm_v2.0_Chr1g0360851' => 'rch', 'RcHm_v2.0_Chr1g0362791' => 'rch', 'RcHm_v2.0_Chr3g0466281' => 'rch', 'RcHm_v2.0_Chr7g0201481' => 'rch', 'Rhsim01G0148600' => 'rsi', 'Rhsim05G0194400' => 'rsi', 'Rhsim07G0000700' => 'rsi', 'Rhsim07G0000800' => 'rsi', 'Rhsim07G0027900' => 'rsi', 'Rhsim09G0149500' => 'rsi', 'RhsimUnG0186900' => 'rsi', 'Sabra01G0089900' => 'sbr', 'Sabra02G0114700' => 'sbr', 'Sabra02G0116300' => 'sbr', 'Sabra03G0080100' => 'sbr', 'Sabra08G0024300' => 'sbr', 'Sabra10G0174300' => 'sbr', 'Sabra14G0048900' => 'sbr', 'Sabra14G0076500' => 'sbr', 'SalBow5G2513' => 'sbo', 'Sc01g0002300' => 'sci', 'Sc01g0004450' => 'sci', 'Sc06g0001680' => 'sci', 'Sc23g0003580' => 'sci', 'Sed0000913' => 'sed', 'Sed0001655' => 'sed', 'Sed0007745' => 'sed', 'Sed0010951' => 'sed', 'Sed0017599' => 'sed', 'Sed0021405' => 'sed', 'Sed0022810' => 'sed', 'SEGI_07099' => 'sgi', 'SEGI_11931' => 'sgi', 'SEGI_13187' => 'sgi', 'SEGI_29958' => 'sgi', 'SEGI_36351' => 'sgi', 'SGA_v2.0_scaffold126G33770' => 'sas', 'SGA_v2.0_scaffold153G37003' => 'sas', 'SGA_v2.0_scaffold2G01359' => 'sas', 'SGA_v2.0_scaffold5G03064' => 'sas', 'SGA_v2.0_scaffold95G28903' => 'sas', 'SHI12701' => 'shi', 'SHI26410' => 'shi', 'SHI38997' => 'shi', 'SHI53759' => 'shi', 'SHI53886' => 'shi', 'SHI54714' => 'shi', 'SMO011G0041' => 'smo', 'SMO146G0251' => 'smo', 'SMO160G0004' => 'smo', 'SMO174G0057' => 'smo', 'SMO244G0089' => 'smo', 'SMO296G0011' => 'smo', 'Solyc01g091280.3' => 'sly', 'Solyc05g047610.3' => 'sly', 'Solyc05g047640.3' => 'sly', 'Solyc05g055630.3' => 'sly', 'Solyc10g018160.2' => 'sly', 'Solyc10g084820.2' => 'sly', 'Solyc10g086565.2' => 'sly', 'Sopen01g037030' => 'spe', 'Sopen05g027920' => 'spe', 'Sopen05g034070' => 'spe', 'Sopen10g007260' => 'spe', 'Sopen10g034260' => 'spe', 'Sopen10g035950' => 'spe', 'Sp3g07710' => 'spa', 'Sp4g27420' => 'spa', 'Sp5g02450' => 'spa', 'Sp6g01280' => 'spa', 'Sp6g38480' => 'spa', 'Sp7g20780' => 'spa', 'TAR374G1413' => 'tar', 'TAR623G1777' => 'tar', 'TAR629G2370' => 'tar', 'TAR633G1759' => 'tar', 'TAR636G3387' => 'tar', 'THA.LOC104802447' => 'tha', 'THA.LOC104813916' => 'tha', 'THA.LOC104816423' => 'tha', 'THA.LOC104817246' => 'tha', 'THA.LOC104825895' => 'tha', 'Thecc.01G335200' => 'tca', 'Thecc.01G377400' => 'tca', 'Thecc.03G262200' => 'tca', 'Thecc.05G036800' => 'tca', 'Thecc.10G080500' => 'tca', 'Thecc.10G080800' => 'tca', 'Thhalv10001560m.g' => 'esa', 'Thhalv10006120m.g' => 'esa', 'Thhalv10014375m.g' => 'esa', 'Thhalv10021264m.g' => 'esa', 'Thhalv10028856m.g' => 'esa', 'TPR.G1914' => 'tpr', 'TPR.G4757' => 'tpr', 'TPR.G5595' => 'tpr', 'TWI14G0952' => 'twi', 'TWI14G1307' => 'twi', 'TWI38G2143' => 'twi', 'TWI59G0826' => 'twi', 'TWI77G0527' => 'twi', 'TWI81G0150' => 'twi', 'unitig_21.g21018' => 'ugi', 'unitig_26.g9725' => 'ugi', 'unitig_744.g24653' => 'ugi', 'unitig_749.g13778' => 'ugi', 'unitig_899.g15035' => 'ugi', 'vmacro04296' => 'vma', 'vmacro04852' => 'vma', 'vmacro13404' => 'vma', 'vmacro20169' => 'vma', 'vmacro21014' => 'vma', 'VMungo0331G0237' => 'vmu', 'VMungo0331G0706' => 'vmu', 'VMungo0331G1361' => 'vmu', 'VMungo0331G1489' => 'vmu', 'VMungo0540G1037' => 'vmu', 'VMungo0720G2487' => 'vmu', 'VMungo0720G2721' => 'vmu', 'Zm00001eb086860' => 'zma', 'Zm00001eb104760' => 'zma', 'Zm00001eb148220' => 'zma', 'Zm00001eb259030' => 'zma', 'Zm00001eb289590' => 'zma', 'Zm00001eb420150' => 'zma' ), 'gf_id' => 'HOM05D000968', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000968' ), 'data_identifier' => 'HOM05D000968', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000968', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p31690' => 'bna', 'A03p36040' => 'bna', 'A03p53730' => 'bna', 'A04p01410' => 'bna', 'A05p05420' => 'bna', 'A05p39630' => 'bna', 'A05p39640' => 'bna', 'A09p00970' => 'bna', 'A09p53060' => 'bna', 'A10p31890' => 'bna', 'Aa31LG10G15040' => 'aar', 'Aa31LG1G21090' => 'aar', 'Aa31LG1G26900' => 'aar', 'Aa31LG3G1820' => 'aar', 'Aa31LG5G1100' => 'aar', 'Aa31LG6G4740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2265' => 'aag', 'Actinidia07998' => 'ach', 'Actinidia11266' => 'ach', 'Actinidia12682' => 'ach', 'Actinidia26479' => 'ach', 'Actinidia31406' => 'ach', 'Actinidia32437' => 'ach', 'Actinidia38862' => 'ach', 'Ah.05g174230' => 'amhyb', 'Ah.05g179070' => 'amhyb', 'Ah.05g179090' => 'amhyb', 'Ah.12g059950' => 'amhyb', 'AL3G20480' => 'aly', 'AL4G44520' => 'aly', 'AL5G43110' => 'aly', 'AL6G13890' => 'aly', 'AL6G52620' => 'aly', 'AL7G30830' => 'aly', 'Aqoxy1G00899' => 'aox', 'Aqoxy5G04333' => 'aox', 'Aqoxy7G00641' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3IZ0NN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4EF6AW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W9P8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79GA3M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C43NQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFCU6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G95YVJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCHK29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LU1UG8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX91RN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGB4B1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8DA0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9H7JI' => 'arhy', 'AT3G09320' => 'ath', 'AT3G60800' => 'ath', 'AT4G00840' => 'ath', 'AT4G22750' => 'ath', 'AT5G04270' => 'ath', 'ATR0090G003' => 'atr', 'ATR0559G349' => 'atr', 'ATR0680G261' => 'atr', 'ATR0810G048' => 'atr', 'Atru.chr12.831' => 'acertr', 'Atru.chr5.303' => 'acertr', 'Atru.chr5.748' => 'acertr', 'Atru.chr8.1999' => 'acertr', 'Atru.chr9.1436' => 'acertr', 'AUR62004211' => 'cqu', 'AUR62004548' => 'cqu', 'AUR62013637' => 'cqu', 'AUR62022662' => 'cqu', 'AUR62025777' => 'cqu', 'AUR62042386' => 'cqu', 'BcaB01g02310' => 'bca', 'BcaB01g06062' => 'bca', 'BcaB02g08975' => 'bca', 'BcaB02g08980' => 'bca', 'BcaC01g04228' => 'bca', 'BcaC01g06830' => 'bca', 'BcaC02g10186' => 'bca', 'BcaC02g12214' => 'bca', 'BcaC04g24101' => 'bca', 'BcaC05g29520' => 'bca', 'BcaC05g29661' => 'bca', 'BcaC06g32130' => 'bca', 'BcaC06g32131' => 'bca', 'BcaC07g40601' => 'bca', 'BcaC07g42641' => 'bca', 'BcaNung01038' => 'bca', 'BcaNung01676' => 'bca', 'BcaNung02480' => 'bca', 'BcaNung07376' => 'bca', 'BolC3t16146H' => 'bol', 'BolC3t16637H' => 'bol', 'BolC4t22257H' => 'bol', 'BolC4t24728H' => 'bol', 'BolC5t34517H' => 'bol', 'BolC7t45703H' => 'bol', 'BolC8t51166H' => 'bol', 'BolC9t53038H' => 'bol', 'BolC9t60000H' => 'bol', 'BraA01t01345Z' => 'bra', 'BraA01t01346Z' => 'bra', 'BraA01t01348Z' => 'bra', 'BraA03t12347Z' => 'bra', 'BraA03t12775Z' => 'bra', 'BraA03t14439Z' => 'bra', 'BraA04t15860Z' => 'bra', 'BraA05t19511Z' => 'bra', 'BraA05t22746Z' => 'bra', 'BraA09t35767Z' => 'bra', 'BraA09t40732Z' => 'bra', 'BraA10t45233Z' => 'bra', 'C03p38720' => 'bna', 'C03p43680' => 'bna', 'C04p06350' => 'bna', 'C04p31800' => 'bna', 'C05p58680' => 'bna', 'C07p52110' => 'bna', 'C08p35760' => 'bna', 'C09p01050' => 'bna', 'C09p72600' => 'bna', 'CAN.G106.2' => 'can', 'CAN.G1482.1' => 'can', 'CAN.G324.12' => 'can', 'CAN.G388.20' => 'can', 'CAN.G412.7' => 'can', 'CAN.G694.32' => 'can', 'CAN.G92.12' => 'can', 'CANSAT11G2353' => 'cansat', 'CANSAT21G1398' => 'cansat', 'CANSAT56G2456' => 'cansat', 'CANSAT56G3031' => 'cansat', 'CANSAT56G4539' => 'cansat', 'CARHR083680' => 'chi', 'CARHR171190' => 'chi', 'CARHR209010' => 'chi', 'CARHR229680' => 'chi', 'CARHR249490' => 'chi', 'Carub.0003s0844' => 'cru', 'Carub.0005s2755' => 'cru', 'Carub.0006s0322' => 'cru', 'Carub.0006s3586' => 'cru', 'Carub.0007s1855' => 'cru', 'Ca_07808_v3' => 'car', 'Ca_09535_v3' => 'car', 'Ca_10548_v3' => 'car', 'Ca_19913_v3' => 'car', 'Ca_19916_v3' => 'car', 'Ca_19975_v3' => 'car', 'CBR_g22876' => 'cbr', 'CBR_g22879' => 'cbr', 'CBR_g38491' => 'cbr', 'CBR_g54185' => 'cbr', 'CBR_g54190' => 'cbr', 'Cc02_g11020' => 'ccan', 'Cc02_g23920' => 'ccan', 'Cc02_g39860' => 'ccan', 'Cc02_g39870' => 'ccan', 'Cc03_g06760' => 'ccan', 'Cc06_g02450' => 'ccan', 'Cc09_g09450' => 'ccan', 'CDE02G1959' => 'cde', 'CDE04G0600' => 'cde', 'CDE07G1996' => 'cde', 'CDE07G2078' => 'cde', 'CDE11G0611' => 'cde', 'Cfa001683' => 'cfa', 'Cfa001734' => 'cfa', 'Cfa001737' => 'cfa', 'Cfa003751' => 'cfa', 'Cfa012019' => 'cfa', 'Cfa017353' => 'cfa', 'Cfa017732' => 'cfa', 'Cfa022464' => 'cfa', 'Ciclev10012400m.g' => 'ccl', 'Ciclev10021242m.g' => 'ccl', 'Ciclev10021302m.g' => 'ccl', 'Ciclev10021463m.g' => 'ccl', 'Ciclev10032359m.g' => 'ccl', 'CiPaw.01G081000' => 'cil', 'CiPaw.01G262500' => 'cil', 'CiPaw.01G269800' => 'cil', 'CiPaw.02G168400' => 'cil', 'CiPaw.05G119500' => 'cil', 'CiPaw.11G147300' => 'cil', 'ClCG01G003630' => 'cla', 'ClCG05G000510' => 'cla', 'ClCG05G002300' => 'cla', 'ClCG08G007650' => 'cla', 'ClCG10G021250' => 'cla', 'COL.COLO4_06218' => 'col', 'COL.COLO4_12538' => 'col', 'COL.COLO4_14775' => 'col', 'COL.COLO4_23875' => 'col', 'Cpa.g.sc141.16' => 'cpa', 'Cpa.g.sc169.16' => 'cpa', 'Cpa.g.sc244.4' => 'cpa', 'Cpa.g.sc244.5' => 'cpa', 'Cpa.g.sc29.87' => 'cpa', 'Cpa.g.sc53.115' => 'cpa', 'Cre03.g207502' => 'cre', 'Cre06.g277000' => 'cre', 'Cre09.g394050' => 'cre', 'CsaV3_3G007680' => 'csa', 'CsaV3_3G009710' => 'csa', 'CsaV3_3G034790' => 'csa', 'CsaV3_5G003750' => 'csa', 'CsaV3_6G036620' => 'csa', 'CSS0002288' => 'camsi', 'CSS0011250' => 'camsi', 'CSS0021619' => 'camsi', 'CSS0046701' => 'camsi', 'DCAR_006420' => 'dca', 'DCAR_006865' => 'dca', 'DCAR_008558' => 'dca', 'DCAR_028754' => 'dca', 'DCAR_028755' => 'dca', 'Dinv31218' => 'din', 'Dinv32371' => 'din', 'Dinv34250' => 'din', 'Dinv37156' => 'din', 'Dinv43704' => 'din', 'Duzib093G1811' => 'dzi', 'Duzib106G1622' => 'dzi', 'Duzib114G0504' => 'dzi', 'Duzib128G0338' => 'dzi', 'Duzib128G1577' => 'dzi', 'Duzib133G0104' => 'dzi', 'Duzib133G1080' => 'dzi', 'Duzib138G0324' => 'dzi', 'Duzib138G0394' => 'dzi', 'Duzib205G0122' => 'dzi', 'Duzib268G1020' => 'dzi', 'Duzib268G1359' => 'dzi', 'ECA232G3929' => 'eca', 'ECA236G2210' => 'eca', 'ECA236G2287' => 'eca', 'ECA240G4568' => 'eca', 'ECA247G0894' => 'eca', 'EL10Ac1g00200' => 'bvu', 'EL10Ac1g00886' => 'bvu', 'EL10As1g23091' => 'bvu', 'EL10As1g23092' => 'bvu', 'Eucgr.A01284' => 'egr', 'Eucgr.A01285' => 'egr', 'Eucgr.D02456' => 'egr', 'Eucgr.E00018' => 'egr', 'Eucgr.E01439' => 'egr', 'Eucgr.G02859' => 'egr', 'FAN01G0168' => 'fan', 'FAN01G0453' => 'fan', 'FAN01G2761' => 'fan', 'FAN02G1239' => 'fan', 'FAN03G0645' => 'fan', 'FAN03G2707' => 'fan', 'FAN03G2978' => 'fan', 'FAN04G0227' => 'fan', 'FAN06G0091' => 'fan', 'FAN06G1418' => 'fan', 'FAN06G1512' => 'fan', 'FAN06G1986' => 'fan', 'FAN06G2905' => 'fan', 'FAN06G4325' => 'fan', 'FAN08G0033' => 'fan', 'FAN09G0642' => 'fan', 'FAN10G1763' => 'fan', 'FAN10G2026' => 'fan', 'FAN10G2513' => 'fan', 'FAN10G3402' => 'fan', 'FAN10G3564' => 'fan', 'FAN10G3987' => 'fan', 'FAN13G1490' => 'fan', 'FAN14G5857' => 'fan', 'FAN18G1188' => 'fan', 'FvH4_5g00750' => 'fve', 'FvH4_6g13410' => 'fve', 'FvH4_7g11740' => 'fve', 'FvH4_7g17410' => 'fve', 'FvH4_7g18860' => 'fve', 'Glyma.01G099100' => 'gma', 'Glyma.01G142300' => 'gma', 'Glyma.03G025500' => 'gma', 'Glyma.03G069700' => 'gma', 'Glyma.03G260000' => 'gma', 'Glyma.09G269800' => 'gma', 'Glyma.10G208700' => 'gma', 'Glyma.18G220400' => 'gma', 'Glyma.20G182000' => 'gma', 'Gohir.A01G221726' => 'ghi', 'Gohir.A07G134600' => 'ghi', 'Gohir.A07G146000' => 'ghi', 'Gohir.A08G173900' => 'ghi', 'Gohir.A09G194900' => 'ghi', 'Gohir.A10G204100' => 'ghi', 'Gohir.A11G080600' => 'ghi', 'Gohir.A11G327500' => 'ghi', 'Gohir.A12G101800' => 'ghi', 'Gohir.D01G211200' => 'ghi', 'Gohir.D07G139200' => 'ghi', 'Gohir.D07G152100' => 'ghi', 'Gohir.D08G192600' => 'ghi', 'Gohir.D09G189200' => 'ghi', 'Gohir.D10G212000' => 'ghi', 'Gohir.D11G085200' => 'ghi', 'Gohir.D11G346400' => 'ghi', 'Gohir.D12G104800' => 'ghi', 'Gorai.001G151300' => 'gra', 'Gorai.001G174100' => 'gra', 'Gorai.002G257000' => 'gra', 'Gorai.004G202600' => 'gra', 'Gorai.007G090900' => 'gra', 'Gorai.007G376700' => 'gra', 'Gorai.008G114100' => 'gra', 'Gorai.011G237900' => 'gra', 'GSVIVG01005450001' => 'vvi', 'GSVIVG01016232001' => 'vvi', 'GSVIVG01026157001' => 'vvi', 'GSVIVG01027419001' => 'vvi', 'GSVIVG01027631001' => 'vvi', 'GSVIVG01034143001' => 'vvi', 'HanXRQChr03g0093921' => 'han', 'HanXRQChr04g0120001' => 'han', 'HanXRQChr04g0122561' => 'han', 'HanXRQChr09g0246851' => 'han', 'HanXRQChr10g0293311' => 'han', 'HanXRQChr13g0425231' => 'han', 'HanXRQChr16g0532571' => 'han', 'Haze_09050' => 'cav', 'Haze_15715' => 'cav', 'Haze_15716' => 'cav', 'Haze_16803' => 'cav', 'Haze_16850' => 'cav', 'Hma1.2p1_0301F.1_g118655' => 'hma', 'Hma1.2p1_0309F.1_g120590' => 'hma', 'Hma1.2p1_0936F.1_g238900' => 'hma', 'Hma1.2p1_3552F.1_g336740' => 'hma', 'HPP92_003520' => 'vpl', 'HPP92_006628' => 'vpl', 'HPP92_006645' => 'vpl', 'HPP92_014669' => 'vpl', 'HPP92_015077' => 'vpl', 'Hund16742' => 'sun', 'Hund17022' => 'sun', 'Lalb_Chr02g0152131' => 'lal', 'Lalb_Chr05g0225371' => 'lal', 'Lalb_Chr07g0189841' => 'lal', 'Lalb_Chr07g0192961' => 'lal', 'Lalb_Chr12g0208221' => 'lal', 'Lalb_Chr13g0291211' => 'lal', 'Lalb_Chr13g0291781' => 'lal', 'Lalb_Chr18g0044651' => 'lal', 'Lalb_Chr21g0313731' => 'lal', 'Lj1g0022533' => 'lja', 'Lj2A18T50' => 'lonja', 'Lj2A92G93' => 'lonja', 'Lj3A965T73' => 'lonja', 'Lj3g0000673' => 'lja', 'Lj3g0002666' => 'lja', 'Lj4g0016985' => 'lja', 'Lj5g0003625' => 'lja', 'Lj7A529G36' => 'lonja', 'Lj9A569T49' => 'lonja', 'Lj9A604T63' => 'lonja', 'Lsat_1_v5_gn_3_132060' => 'lsa', 'Lsat_1_v5_gn_4_68941' => 'lsa', 'Lsat_1_v5_gn_5_95580' => 'lsa', 'Lsat_1_v5_gn_7_161' => 'lsa', 'Lsat_1_v5_gn_7_7041' => 'lsa', 'Lsat_1_v5_gn_9_33481' => 'lsa', 'Lsat_1_v5_gn_9_68260' => 'lsa', 'Manes.01G073100' => 'mes', 'Manes.01G266300' => 'mes', 'Manes.02G033300' => 'mes', 'Manes.05G017900' => 'mes', 'Manes.05G046100' => 'mes', 'Manes.08G080900' => 'mes', 'Manes.10G049400' => 'mes', 'Mapoly0009s0186' => 'mpo', 'Mapoly0036s0118' => 'mpo', 'Mapoly0101s0046' => 'mpo', 'MBI04_g30218_MAGBIO' => 'mbi', 'MBI04_g35564_MAGBIO' => 'mbi', 'MBI12_g34011_MAGBIO' => 'mbi', 'MBI14_g04655_MAGBIO' => 'mbi', 'MCO07G653' => 'mco', 'MCO10G173' => 'mco', 'MD01G1087100' => 'mdo', 'MD01G1104200' => 'mdo', 'MD02G1205100' => 'mdo', 'MD04G1079200' => 'mdo', 'MD04G1131400' => 'mdo', 'MD07G1121600' => 'mdo', 'MD07G1157300' => 'mdo', 'MD07G1171000' => 'mdo', 'MD12G1144500' => 'mdo', 'Medtr1g094610' => 'mtr', 'Medtr4g021795' => 'mtr', 'Medtr4g023760' => 'mtr', 'Medtr7g118050' => 'mtr', 'MELO3C005582.2' => 'cme', 'MELO3C005989.2' => 'cme', 'MELO3C006192.2' => 'cme', 'MELO3C009248.2' => 'cme', 'MELO3C019817.2' => 'cme', 'Migut.B01625' => 'egut', 'Migut.B01915' => 'egut', 'Migut.F01721' => 'egut', 'Migut.J00314' => 'egut', 'MSTRG.20742' => 'ama', 'MSTRG.8134' => 'ama', 'Nitab4.5_0000096g0010' => 'nta', 'Nitab4.5_0000202g0030' => 'nta', 'Nitab4.5_0000216g0370' => 'nta', 'Nitab4.5_0000457g0230' => 'nta', 'Nitab4.5_0001702g0170' => 'nta', 'Nitab4.5_0003607g0010' => 'nta', 'Nitab4.5_0004917g0020' => 'nta', 'Nitab4.5_0007059g0010' => 'nta', 'Nitab4.5_0007184g0010' => 'nta', 'Nitab4.5_0007346g0020' => 'nta', 'Nn1g00410' => 'nnu', 'Nn1g01252' => 'nnu', 'Nn2g11168' => 'nnu', 'Nn2g13403' => 'nnu', 'Nn2g13760' => 'nnu', 'Nn4g26380' => 'nnu', 'Oeu000806.2' => 'oeu', 'Oeu005788.1' => 'oeu', 'Oeu006900.3' => 'oeu', 'Oeu007797.1' => 'oeu', 'Oeu011932.1' => 'oeu', 'Oeu022739.1' => 'oeu', 'Oeu037918.1' => 'oeu', 'Oeu055490.2' => 'oeu', 'Os01g0844400' => 'osa', 'Os02g0819100' => 'osa', 'Os03g0804300' => 'osa', 'Os05g0458000' => 'osa', 'Os07g0467800' => 'osa', 'Os12g0602200' => 'osa', 'Peaxi162Scf00013g03444' => 'pax', 'Peaxi162Scf00094g01120' => 'pax', 'Peaxi162Scf00191g01211' => 'pax', 'Peaxi162Scf00238g01110' => 'pax', 'Peaxi162Scf00330g00719' => 'pax', 'Peaxi162Scf00627g00018' => 'pax', 'PGR031G2686' => 'pgr', 'PGR042G0809' => 'pgr', 'PGR142G0193' => 'pgr', 'PGSC0003DMG400011066' => 'stu', 'PGSC0003DMG400012041' => 'stu', 'PGSC0003DMG400013678' => 'stu', 'PGSC0003DMG400023477' => 'stu', 'PGSC0003DMG400025956' => 'stu', 'PGSC0003DMG401019151' => 'stu', 'Phvul.006G116400' => 'pvu', 'Phvul.007G097300' => 'pvu', 'Phvul.010G015000' => 'pvu', 'Phvul.010G083900' => 'pvu', 'Potri.001G117100' => 'ptr', 'Potri.002G147300' => 'ptr', 'Potri.003G115600' => 'ptr', 'Potri.006G087400' => 'ptr', 'Potri.010G226100' => 'ptr', 'Potri.014G069200' => 'ptr', 'Potri.014G104000' => 'ptr', 'Potri.016G100200' => 'ptr', 'Pp3c10_20450' => 'ppa', 'Pp3c1_42400' => 'ppa', 'Pp3c3_24390' => 'ppa', 'Pp3c3_2860' => 'ppa', 'PRCOL_00003193' => 'pco', 'Prupe.2G144500' => 'ppe', 'Prupe.2G195700' => 'ppe', 'Prupe.2G209800' => 'ppe', 'Prupe.5G080000' => 'ppe', 'Prupe.6G257900' => 'ppe', 'Psat3g001160' => 'psa', 'Psat6g181880' => 'psa', 'Psat7g233720' => 'psa', 'PSO063G7587' => 'pso', 'PSO339G2145' => 'pso', 'PSO339G3369' => 'pso', 'PSO478G2747' => 'pso', 'PSO513G0140' => 'pso', 'PSO782G1614' => 'pso', 'PSO782G4889' => 'pso', 'PSO782G5485' => 'pso', 'PSO801G0241' => 'pso', 'QL07p048854' => 'qlo', 'QL08p046745' => 'qlo', 'QL08p052606' => 'qlo', 'QL08p053414' => 'qlo', 'QL08p054868' => 'qlo', 'RcHm_v2.0_Chr1g0350251' => 'rch', 'RcHm_v2.0_Chr1g0360851' => 'rch', 'RcHm_v2.0_Chr1g0362791' => 'rch', 'RcHm_v2.0_Chr3g0466281' => 'rch', 'RcHm_v2.0_Chr7g0201481' => 'rch', 'Rhsim01G0148600' => 'rsi', 'Rhsim05G0194400' => 'rsi', 'Rhsim07G0000700' => 'rsi', 'Rhsim07G0000800' => 'rsi', 'Rhsim07G0027900' => 'rsi', 'Rhsim09G0149500' => 'rsi', 'RhsimUnG0186900' => 'rsi', 'Sabra01G0089900' => 'sbr', 'Sabra02G0114700' => 'sbr', 'Sabra02G0116300' => 'sbr', 'Sabra03G0080100' => 'sbr', 'Sabra08G0024300' => 'sbr', 'Sabra10G0174300' => 'sbr', 'Sabra14G0048900' => 'sbr', 'Sabra14G0076500' => 'sbr', 'SalBow5G2513' => 'sbo', 'Sc01g0002300' => 'sci', 'Sc01g0004450' => 'sci', 'Sc06g0001680' => 'sci', 'Sc23g0003580' => 'sci', 'Sed0000913' => 'sed', 'Sed0001655' => 'sed', 'Sed0007745' => 'sed', 'Sed0010951' => 'sed', 'Sed0017599' => 'sed', 'Sed0021405' => 'sed', 'Sed0022810' => 'sed', 'SEGI_07099' => 'sgi', 'SEGI_11931' => 'sgi', 'SEGI_13187' => 'sgi', 'SEGI_29958' => 'sgi', 'SEGI_36351' => 'sgi', 'SGA_v2.0_scaffold126G33770' => 'sas', 'SGA_v2.0_scaffold153G37003' => 'sas', 'SGA_v2.0_scaffold2G01359' => 'sas', 'SGA_v2.0_scaffold5G03064' => 'sas', 'SGA_v2.0_scaffold95G28903' => 'sas', 'SHI12701' => 'shi', 'SHI26410' => 'shi', 'SHI38997' => 'shi', 'SHI53759' => 'shi', 'SHI53886' => 'shi', 'SHI54714' => 'shi', 'SMO011G0041' => 'smo', 'SMO146G0251' => 'smo', 'SMO160G0004' => 'smo', 'SMO174G0057' => 'smo', 'SMO244G0089' => 'smo', 'SMO296G0011' => 'smo', 'Solyc01g091280.3' => 'sly', 'Solyc05g047610.3' => 'sly', 'Solyc05g047640.3' => 'sly', 'Solyc05g055630.3' => 'sly', 'Solyc10g018160.2' => 'sly', 'Solyc10g084820.2' => 'sly', 'Solyc10g086565.2' => 'sly', 'Sopen01g037030' => 'spe', 'Sopen05g027920' => 'spe', 'Sopen05g034070' => 'spe', 'Sopen10g007260' => 'spe', 'Sopen10g034260' => 'spe', 'Sopen10g035950' => 'spe', 'Sp3g07710' => 'spa', 'Sp4g27420' => 'spa', 'Sp5g02450' => 'spa', 'Sp6g01280' => 'spa', 'Sp6g38480' => 'spa', 'Sp7g20780' => 'spa', 'TAR374G1413' => 'tar', 'TAR623G1777' => 'tar', 'TAR629G2370' => 'tar', 'TAR633G1759' => 'tar', 'TAR636G3387' => 'tar', 'THA.LOC104802447' => 'tha', 'THA.LOC104813916' => 'tha', 'THA.LOC104816423' => 'tha', 'THA.LOC104817246' => 'tha', 'THA.LOC104825895' => 'tha', 'Thecc.01G335200' => 'tca', 'Thecc.01G377400' => 'tca', 'Thecc.03G262200' => 'tca', 'Thecc.05G036800' => 'tca', 'Thecc.10G080500' => 'tca', 'Thecc.10G080800' => 'tca', 'Thhalv10001560m.g' => 'esa', 'Thhalv10006120m.g' => 'esa', 'Thhalv10014375m.g' => 'esa', 'Thhalv10021264m.g' => 'esa', 'Thhalv10028856m.g' => 'esa', 'TPR.G1914' => 'tpr', 'TPR.G4757' => 'tpr', 'TPR.G5595' => 'tpr', 'TWI14G0952' => 'twi', 'TWI14G1307' => 'twi', 'TWI38G2143' => 'twi', 'TWI59G0826' => 'twi', 'TWI77G0527' => 'twi', 'TWI81G0150' => 'twi', 'unitig_21.g21018' => 'ugi', 'unitig_26.g9725' => 'ugi', 'unitig_744.g24653' => 'ugi', 'unitig_749.g13778' => 'ugi', 'unitig_899.g15035' => 'ugi', 'vmacro04296' => 'vma', 'vmacro04852' => 'vma', 'vmacro13404' => 'vma', 'vmacro20169' => 'vma', 'vmacro21014' => 'vma', 'VMungo0331G0237' => 'vmu', 'VMungo0331G0706' => 'vmu', 'VMungo0331G1361' => 'vmu', 'VMungo0331G1489' => 'vmu', 'VMungo0540G1037' => 'vmu', 'VMungo0720G2487' => 'vmu', 'VMungo0720G2721' => 'vmu', 'Zm00001eb086860' => 'zma', 'Zm00001eb104760' => 'zma', 'Zm00001eb148220' => 'zma', 'Zm00001eb259030' => 'zma', 'Zm00001eb289590' => 'zma', 'Zm00001eb420150' => 'zma' ) $gf_id = 'HOM05D000968' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000968' ) $data_identifier = 'HOM05D000968' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 19, 'bol' => (int) 9, 'bra' => (int) 12, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 5, 'ccan' => (int) 7, 'cde' => (int) 5, 'cfa' => (int) 8, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 4, 'dca' => (int) 5, 'din' => (int) 5, 'dzi' => (int) 12, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 25, 'fve' => (int) 5, 'gma' => (int) 9, 'ghi' => (int) 18, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 7, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 5, 'sun' => (int) 2, 'lal' => (int) 9, 'lja' => (int) 5, 'lonja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 9, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 2, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 3, 'stu' => (int) 6, 'pvu' => (int) 4, 'ptr' => (int) 8, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 3, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 1, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 5, 'sas' => (int) 5, 'shi' => (int) 6, 'smo' => (int) 6, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 3, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420150' $species_info = array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ) $local_species = 'smo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000968', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p31690' => 'bna', 'A03p36040' => 'bna', 'A03p53730' => 'bna', 'A04p01410' => 'bna', 'A05p05420' => 'bna', 'A05p39630' => 'bna', 'A05p39640' => 'bna', 'A09p00970' => 'bna', 'A09p53060' => 'bna', 'A10p31890' => 'bna', 'Aa31LG10G15040' => 'aar', 'Aa31LG1G21090' => 'aar', 'Aa31LG1G26900' => 'aar', 'Aa31LG3G1820' => 'aar', 'Aa31LG5G1100' => 'aar', 'Aa31LG6G4740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2265' => 'aag', 'Actinidia07998' => 'ach', 'Actinidia11266' => 'ach', 'Actinidia12682' => 'ach', 'Actinidia26479' => 'ach', 'Actinidia31406' => 'ach', 'Actinidia32437' => 'ach', 'Actinidia38862' => 'ach', 'Ah.05g174230' => 'amhyb', 'Ah.05g179070' => 'amhyb', 'Ah.05g179090' => 'amhyb', 'Ah.12g059950' => 'amhyb', 'AL3G20480' => 'aly', 'AL4G44520' => 'aly', 'AL5G43110' => 'aly', 'AL6G13890' => 'aly', 'AL6G52620' => 'aly', 'AL7G30830' => 'aly', 'Aqoxy1G00899' => 'aox', 'Aqoxy5G04333' => 'aox', 'Aqoxy7G00641' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3IZ0NN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4EF6AW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W9P8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79GA3M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C43NQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFCU6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G95YVJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCHK29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LU1UG8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX91RN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGB4B1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8DA0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9H7JI' => 'arhy', 'AT3G09320' => 'ath', 'AT3G60800' => 'ath', 'AT4G00840' => 'ath', 'AT4G22750' => 'ath', 'AT5G04270' => 'ath', 'ATR0090G003' => 'atr', 'ATR0559G349' => 'atr', 'ATR0680G261' => 'atr', 'ATR0810G048' => 'atr', 'Atru.chr12.831' => 'acertr', 'Atru.chr5.303' => 'acertr', 'Atru.chr5.748' => 'acertr', 'Atru.chr8.1999' => 'acertr', 'Atru.chr9.1436' => 'acertr', 'AUR62004211' => 'cqu', 'AUR62004548' => 'cqu', 'AUR62013637' => 'cqu', 'AUR62022662' => 'cqu', 'AUR62025777' => 'cqu', 'AUR62042386' => 'cqu', 'BcaB01g02310' => 'bca', 'BcaB01g06062' => 'bca', 'BcaB02g08975' => 'bca', 'BcaB02g08980' => 'bca', 'BcaC01g04228' => 'bca', 'BcaC01g06830' => 'bca', 'BcaC02g10186' => 'bca', 'BcaC02g12214' => 'bca', 'BcaC04g24101' => 'bca', 'BcaC05g29520' => 'bca', 'BcaC05g29661' => 'bca', 'BcaC06g32130' => 'bca', 'BcaC06g32131' => 'bca', 'BcaC07g40601' => 'bca', 'BcaC07g42641' => 'bca', 'BcaNung01038' => 'bca', 'BcaNung01676' => 'bca', 'BcaNung02480' => 'bca', 'BcaNung07376' => 'bca', 'BolC3t16146H' => 'bol', 'BolC3t16637H' => 'bol', 'BolC4t22257H' => 'bol', 'BolC4t24728H' => 'bol', 'BolC5t34517H' => 'bol', 'BolC7t45703H' => 'bol', 'BolC8t51166H' => 'bol', 'BolC9t53038H' => 'bol', 'BolC9t60000H' => 'bol', 'BraA01t01345Z' => 'bra', 'BraA01t01346Z' => 'bra', 'BraA01t01348Z' => 'bra', 'BraA03t12347Z' => 'bra', 'BraA03t12775Z' => 'bra', 'BraA03t14439Z' => 'bra', 'BraA04t15860Z' => 'bra', 'BraA05t19511Z' => 'bra', 'BraA05t22746Z' => 'bra', 'BraA09t35767Z' => 'bra', 'BraA09t40732Z' => 'bra', 'BraA10t45233Z' => 'bra', 'C03p38720' => 'bna', 'C03p43680' => 'bna', 'C04p06350' => 'bna', 'C04p31800' => 'bna', 'C05p58680' => 'bna', 'C07p52110' => 'bna', 'C08p35760' => 'bna', 'C09p01050' => 'bna', 'C09p72600' => 'bna', 'CAN.G106.2' => 'can', 'CAN.G1482.1' => 'can', 'CAN.G324.12' => 'can', 'CAN.G388.20' => 'can', 'CAN.G412.7' => 'can', 'CAN.G694.32' => 'can', 'CAN.G92.12' => 'can', 'CANSAT11G2353' => 'cansat', 'CANSAT21G1398' => 'cansat', 'CANSAT56G2456' => 'cansat', 'CANSAT56G3031' => 'cansat', 'CANSAT56G4539' => 'cansat', 'CARHR083680' => 'chi', 'CARHR171190' => 'chi', 'CARHR209010' => 'chi', 'CARHR229680' => 'chi', 'CARHR249490' => 'chi', 'Carub.0003s0844' => 'cru', 'Carub.0005s2755' => 'cru', 'Carub.0006s0322' => 'cru', 'Carub.0006s3586' => 'cru', 'Carub.0007s1855' => 'cru', 'Ca_07808_v3' => 'car', 'Ca_09535_v3' => 'car', 'Ca_10548_v3' => 'car', 'Ca_19913_v3' => 'car', 'Ca_19916_v3' => 'car', 'Ca_19975_v3' => 'car', 'CBR_g22876' => 'cbr', 'CBR_g22879' => 'cbr', 'CBR_g38491' => 'cbr', 'CBR_g54185' => 'cbr', 'CBR_g54190' => 'cbr', 'Cc02_g11020' => 'ccan', 'Cc02_g23920' => 'ccan', 'Cc02_g39860' => 'ccan', 'Cc02_g39870' => 'ccan', 'Cc03_g06760' => 'ccan', 'Cc06_g02450' => 'ccan', 'Cc09_g09450' => 'ccan', 'CDE02G1959' => 'cde', 'CDE04G0600' => 'cde', 'CDE07G1996' => 'cde', 'CDE07G2078' => 'cde', 'CDE11G0611' => 'cde', 'Cfa001683' => 'cfa', 'Cfa001734' => 'cfa', 'Cfa001737' => 'cfa', 'Cfa003751' => 'cfa', 'Cfa012019' => 'cfa', 'Cfa017353' => 'cfa', 'Cfa017732' => 'cfa', 'Cfa022464' => 'cfa', 'Ciclev10012400m.g' => 'ccl', 'Ciclev10021242m.g' => 'ccl', 'Ciclev10021302m.g' => 'ccl', 'Ciclev10021463m.g' => 'ccl', 'Ciclev10032359m.g' => 'ccl', 'CiPaw.01G081000' => 'cil', 'CiPaw.01G262500' => 'cil', 'CiPaw.01G269800' => 'cil', 'CiPaw.02G168400' => 'cil', 'CiPaw.05G119500' => 'cil', 'CiPaw.11G147300' => 'cil', 'ClCG01G003630' => 'cla', 'ClCG05G000510' => 'cla', 'ClCG05G002300' => 'cla', 'ClCG08G007650' => 'cla', 'ClCG10G021250' => 'cla', 'COL.COLO4_06218' => 'col', 'COL.COLO4_12538' => 'col', 'COL.COLO4_14775' => 'col', 'COL.COLO4_23875' => 'col', 'Cpa.g.sc141.16' => 'cpa', 'Cpa.g.sc169.16' => 'cpa', 'Cpa.g.sc244.4' => 'cpa', 'Cpa.g.sc244.5' => 'cpa', 'Cpa.g.sc29.87' => 'cpa', 'Cpa.g.sc53.115' => 'cpa', 'Cre03.g207502' => 'cre', 'Cre06.g277000' => 'cre', 'Cre09.g394050' => 'cre', 'CsaV3_3G007680' => 'csa', 'CsaV3_3G009710' => 'csa', 'CsaV3_3G034790' => 'csa', 'CsaV3_5G003750' => 'csa', 'CsaV3_6G036620' => 'csa', 'CSS0002288' => 'camsi', 'CSS0011250' => 'camsi', 'CSS0021619' => 'camsi', 'CSS0046701' => 'camsi', 'DCAR_006420' => 'dca', 'DCAR_006865' => 'dca', 'DCAR_008558' => 'dca', 'DCAR_028754' => 'dca', 'DCAR_028755' => 'dca', 'Dinv31218' => 'din', 'Dinv32371' => 'din', 'Dinv34250' => 'din', 'Dinv37156' => 'din', 'Dinv43704' => 'din', 'Duzib093G1811' => 'dzi', 'Duzib106G1622' => 'dzi', 'Duzib114G0504' => 'dzi', 'Duzib128G0338' => 'dzi', 'Duzib128G1577' => 'dzi', 'Duzib133G0104' => 'dzi', 'Duzib133G1080' => 'dzi', 'Duzib138G0324' => 'dzi', 'Duzib138G0394' => 'dzi', 'Duzib205G0122' => 'dzi', 'Duzib268G1020' => 'dzi', 'Duzib268G1359' => 'dzi', 'ECA232G3929' => 'eca', 'ECA236G2210' => 'eca', 'ECA236G2287' => 'eca', 'ECA240G4568' => 'eca', 'ECA247G0894' => 'eca', 'EL10Ac1g00200' => 'bvu', 'EL10Ac1g00886' => 'bvu', 'EL10As1g23091' => 'bvu', 'EL10As1g23092' => 'bvu', 'Eucgr.A01284' => 'egr', 'Eucgr.A01285' => 'egr', 'Eucgr.D02456' => 'egr', 'Eucgr.E00018' => 'egr', 'Eucgr.E01439' => 'egr', 'Eucgr.G02859' => 'egr', 'FAN01G0168' => 'fan', 'FAN01G0453' => 'fan', 'FAN01G2761' => 'fan', 'FAN02G1239' => 'fan', 'FAN03G0645' => 'fan', 'FAN03G2707' => 'fan', 'FAN03G2978' => 'fan', 'FAN04G0227' => 'fan', 'FAN06G0091' => 'fan', 'FAN06G1418' => 'fan', 'FAN06G1512' => 'fan', 'FAN06G1986' => 'fan', 'FAN06G2905' => 'fan', 'FAN06G4325' => 'fan', 'FAN08G0033' => 'fan', 'FAN09G0642' => 'fan', 'FAN10G1763' => 'fan', 'FAN10G2026' => 'fan', 'FAN10G2513' => 'fan', 'FAN10G3402' => 'fan', 'FAN10G3564' => 'fan', 'FAN10G3987' => 'fan', 'FAN13G1490' => 'fan', 'FAN14G5857' => 'fan', 'FAN18G1188' => 'fan', 'FvH4_5g00750' => 'fve', 'FvH4_6g13410' => 'fve', 'FvH4_7g11740' => 'fve', 'FvH4_7g17410' => 'fve', 'FvH4_7g18860' => 'fve', 'Glyma.01G099100' => 'gma', 'Glyma.01G142300' => 'gma', 'Glyma.03G025500' => 'gma', 'Glyma.03G069700' => 'gma', 'Glyma.03G260000' => 'gma', 'Glyma.09G269800' => 'gma', 'Glyma.10G208700' => 'gma', 'Glyma.18G220400' => 'gma', 'Glyma.20G182000' => 'gma', 'Gohir.A01G221726' => 'ghi', 'Gohir.A07G134600' => 'ghi', 'Gohir.A07G146000' => 'ghi', 'Gohir.A08G173900' => 'ghi', 'Gohir.A09G194900' => 'ghi', 'Gohir.A10G204100' => 'ghi', 'Gohir.A11G080600' => 'ghi', 'Gohir.A11G327500' => 'ghi', 'Gohir.A12G101800' => 'ghi', 'Gohir.D01G211200' => 'ghi', 'Gohir.D07G139200' => 'ghi', 'Gohir.D07G152100' => 'ghi', 'Gohir.D08G192600' => 'ghi', 'Gohir.D09G189200' => 'ghi', 'Gohir.D10G212000' => 'ghi', 'Gohir.D11G085200' => 'ghi', 'Gohir.D11G346400' => 'ghi', 'Gohir.D12G104800' => 'ghi', 'Gorai.001G151300' => 'gra', 'Gorai.001G174100' => 'gra', 'Gorai.002G257000' => 'gra', 'Gorai.004G202600' => 'gra', 'Gorai.007G090900' => 'gra', 'Gorai.007G376700' => 'gra', 'Gorai.008G114100' => 'gra', 'Gorai.011G237900' => 'gra', 'GSVIVG01005450001' => 'vvi', 'GSVIVG01016232001' => 'vvi', 'GSVIVG01026157001' => 'vvi', 'GSVIVG01027419001' => 'vvi', 'GSVIVG01027631001' => 'vvi', 'GSVIVG01034143001' => 'vvi', 'HanXRQChr03g0093921' => 'han', 'HanXRQChr04g0120001' => 'han', 'HanXRQChr04g0122561' => 'han', 'HanXRQChr09g0246851' => 'han', 'HanXRQChr10g0293311' => 'han', 'HanXRQChr13g0425231' => 'han', 'HanXRQChr16g0532571' => 'han', 'Haze_09050' => 'cav', 'Haze_15715' => 'cav', 'Haze_15716' => 'cav', 'Haze_16803' => 'cav', 'Haze_16850' => 'cav', 'Hma1.2p1_0301F.1_g118655' => 'hma', 'Hma1.2p1_0309F.1_g120590' => 'hma', 'Hma1.2p1_0936F.1_g238900' => 'hma', 'Hma1.2p1_3552F.1_g336740' => 'hma', 'HPP92_003520' => 'vpl', 'HPP92_006628' => 'vpl', 'HPP92_006645' => 'vpl', 'HPP92_014669' => 'vpl', 'HPP92_015077' => 'vpl', 'Hund16742' => 'sun', 'Hund17022' => 'sun', 'Lalb_Chr02g0152131' => 'lal', 'Lalb_Chr05g0225371' => 'lal', 'Lalb_Chr07g0189841' => 'lal', 'Lalb_Chr07g0192961' => 'lal', 'Lalb_Chr12g0208221' => 'lal', 'Lalb_Chr13g0291211' => 'lal', 'Lalb_Chr13g0291781' => 'lal', 'Lalb_Chr18g0044651' => 'lal', 'Lalb_Chr21g0313731' => 'lal', 'Lj1g0022533' => 'lja', 'Lj2A18T50' => 'lonja', 'Lj2A92G93' => 'lonja', 'Lj3A965T73' => 'lonja', 'Lj3g0000673' => 'lja', 'Lj3g0002666' => 'lja', 'Lj4g0016985' => 'lja', 'Lj5g0003625' => 'lja', 'Lj7A529G36' => 'lonja', 'Lj9A569T49' => 'lonja', 'Lj9A604T63' => 'lonja', 'Lsat_1_v5_gn_3_132060' => 'lsa', 'Lsat_1_v5_gn_4_68941' => 'lsa', 'Lsat_1_v5_gn_5_95580' => 'lsa', 'Lsat_1_v5_gn_7_161' => 'lsa', 'Lsat_1_v5_gn_7_7041' => 'lsa', 'Lsat_1_v5_gn_9_33481' => 'lsa', 'Lsat_1_v5_gn_9_68260' => 'lsa', 'Manes.01G073100' => 'mes', 'Manes.01G266300' => 'mes', 'Manes.02G033300' => 'mes', 'Manes.05G017900' => 'mes', 'Manes.05G046100' => 'mes', 'Manes.08G080900' => 'mes', 'Manes.10G049400' => 'mes', 'Mapoly0009s0186' => 'mpo', 'Mapoly0036s0118' => 'mpo', 'Mapoly0101s0046' => 'mpo', 'MBI04_g30218_MAGBIO' => 'mbi', 'MBI04_g35564_MAGBIO' => 'mbi', 'MBI12_g34011_MAGBIO' => 'mbi', 'MBI14_g04655_MAGBIO' => 'mbi', 'MCO07G653' => 'mco', 'MCO10G173' => 'mco', 'MD01G1087100' => 'mdo', 'MD01G1104200' => 'mdo', 'MD02G1205100' => 'mdo', 'MD04G1079200' => 'mdo', 'MD04G1131400' => 'mdo', 'MD07G1121600' => 'mdo', 'MD07G1157300' => 'mdo', 'MD07G1171000' => 'mdo', 'MD12G1144500' => 'mdo', 'Medtr1g094610' => 'mtr', 'Medtr4g021795' => 'mtr', 'Medtr4g023760' => 'mtr', 'Medtr7g118050' => 'mtr', 'MELO3C005582.2' => 'cme', 'MELO3C005989.2' => 'cme', 'MELO3C006192.2' => 'cme', 'MELO3C009248.2' => 'cme', 'MELO3C019817.2' => 'cme', 'Migut.B01625' => 'egut', 'Migut.B01915' => 'egut', 'Migut.F01721' => 'egut', 'Migut.J00314' => 'egut', 'MSTRG.20742' => 'ama', 'MSTRG.8134' => 'ama', 'Nitab4.5_0000096g0010' => 'nta', 'Nitab4.5_0000202g0030' => 'nta', 'Nitab4.5_0000216g0370' => 'nta', 'Nitab4.5_0000457g0230' => 'nta', 'Nitab4.5_0001702g0170' => 'nta', 'Nitab4.5_0003607g0010' => 'nta', 'Nitab4.5_0004917g0020' => 'nta', 'Nitab4.5_0007059g0010' => 'nta', 'Nitab4.5_0007184g0010' => 'nta', 'Nitab4.5_0007346g0020' => 'nta', 'Nn1g00410' => 'nnu', 'Nn1g01252' => 'nnu', 'Nn2g11168' => 'nnu', 'Nn2g13403' => 'nnu', 'Nn2g13760' => 'nnu', 'Nn4g26380' => 'nnu', 'Oeu000806.2' => 'oeu', 'Oeu005788.1' => 'oeu', 'Oeu006900.3' => 'oeu', 'Oeu007797.1' => 'oeu', 'Oeu011932.1' => 'oeu', 'Oeu022739.1' => 'oeu', 'Oeu037918.1' => 'oeu', 'Oeu055490.2' => 'oeu', 'Os01g0844400' => 'osa', 'Os02g0819100' => 'osa', 'Os03g0804300' => 'osa', 'Os05g0458000' => 'osa', 'Os07g0467800' => 'osa', 'Os12g0602200' => 'osa', 'Peaxi162Scf00013g03444' => 'pax', 'Peaxi162Scf00094g01120' => 'pax', 'Peaxi162Scf00191g01211' => 'pax', 'Peaxi162Scf00238g01110' => 'pax', 'Peaxi162Scf00330g00719' => 'pax', 'Peaxi162Scf00627g00018' => 'pax', 'PGR031G2686' => 'pgr', 'PGR042G0809' => 'pgr', 'PGR142G0193' => 'pgr', 'PGSC0003DMG400011066' => 'stu', 'PGSC0003DMG400012041' => 'stu', 'PGSC0003DMG400013678' => 'stu', 'PGSC0003DMG400023477' => 'stu', 'PGSC0003DMG400025956' => 'stu', 'PGSC0003DMG401019151' => 'stu', 'Phvul.006G116400' => 'pvu', 'Phvul.007G097300' => 'pvu', 'Phvul.010G015000' => 'pvu', 'Phvul.010G083900' => 'pvu', 'Potri.001G117100' => 'ptr', 'Potri.002G147300' => 'ptr', 'Potri.003G115600' => 'ptr', 'Potri.006G087400' => 'ptr', 'Potri.010G226100' => 'ptr', 'Potri.014G069200' => 'ptr', 'Potri.014G104000' => 'ptr', 'Potri.016G100200' => 'ptr', 'Pp3c10_20450' => 'ppa', 'Pp3c1_42400' => 'ppa', 'Pp3c3_24390' => 'ppa', 'Pp3c3_2860' => 'ppa', 'PRCOL_00003193' => 'pco', 'Prupe.2G144500' => 'ppe', 'Prupe.2G195700' => 'ppe', 'Prupe.2G209800' => 'ppe', 'Prupe.5G080000' => 'ppe', 'Prupe.6G257900' => 'ppe', 'Psat3g001160' => 'psa', 'Psat6g181880' => 'psa', 'Psat7g233720' => 'psa', 'PSO063G7587' => 'pso', 'PSO339G2145' => 'pso', 'PSO339G3369' => 'pso', 'PSO478G2747' => 'pso', 'PSO513G0140' => 'pso', 'PSO782G1614' => 'pso', 'PSO782G4889' => 'pso', 'PSO782G5485' => 'pso', 'PSO801G0241' => 'pso', 'QL07p048854' => 'qlo', 'QL08p046745' => 'qlo', 'QL08p052606' => 'qlo', 'QL08p053414' => 'qlo', 'QL08p054868' => 'qlo', 'RcHm_v2.0_Chr1g0350251' => 'rch', 'RcHm_v2.0_Chr1g0360851' => 'rch', 'RcHm_v2.0_Chr1g0362791' => 'rch', 'RcHm_v2.0_Chr3g0466281' => 'rch', 'RcHm_v2.0_Chr7g0201481' => 'rch', 'Rhsim01G0148600' => 'rsi', 'Rhsim05G0194400' => 'rsi', 'Rhsim07G0000700' => 'rsi', 'Rhsim07G0000800' => 'rsi', 'Rhsim07G0027900' => 'rsi', 'Rhsim09G0149500' => 'rsi', 'RhsimUnG0186900' => 'rsi', 'Sabra01G0089900' => 'sbr', 'Sabra02G0114700' => 'sbr', 'Sabra02G0116300' => 'sbr', 'Sabra03G0080100' => 'sbr', 'Sabra08G0024300' => 'sbr', 'Sabra10G0174300' => 'sbr', 'Sabra14G0048900' => 'sbr', 'Sabra14G0076500' => 'sbr', 'SalBow5G2513' => 'sbo', 'Sc01g0002300' => 'sci', 'Sc01g0004450' => 'sci', 'Sc06g0001680' => 'sci', 'Sc23g0003580' => 'sci', 'Sed0000913' => 'sed', 'Sed0001655' => 'sed', 'Sed0007745' => 'sed', 'Sed0010951' => 'sed', 'Sed0017599' => 'sed', 'Sed0021405' => 'sed', 'Sed0022810' => 'sed', 'SEGI_07099' => 'sgi', 'SEGI_11931' => 'sgi', 'SEGI_13187' => 'sgi', 'SEGI_29958' => 'sgi', 'SEGI_36351' => 'sgi', 'SGA_v2.0_scaffold126G33770' => 'sas', 'SGA_v2.0_scaffold153G37003' => 'sas', 'SGA_v2.0_scaffold2G01359' => 'sas', 'SGA_v2.0_scaffold5G03064' => 'sas', 'SGA_v2.0_scaffold95G28903' => 'sas', 'SHI12701' => 'shi', 'SHI26410' => 'shi', 'SHI38997' => 'shi', 'SHI53759' => 'shi', 'SHI53886' => 'shi', 'SHI54714' => 'shi', 'SMO011G0041' => 'smo', 'SMO146G0251' => 'smo', 'SMO160G0004' => 'smo', 'SMO174G0057' => 'smo', 'SMO244G0089' => 'smo', 'SMO296G0011' => 'smo', 'Solyc01g091280.3' => 'sly', 'Solyc05g047610.3' => 'sly', 'Solyc05g047640.3' => 'sly', 'Solyc05g055630.3' => 'sly', 'Solyc10g018160.2' => 'sly', 'Solyc10g084820.2' => 'sly', 'Solyc10g086565.2' => 'sly', 'Sopen01g037030' => 'spe', 'Sopen05g027920' => 'spe', 'Sopen05g034070' => 'spe', 'Sopen10g007260' => 'spe', 'Sopen10g034260' => 'spe', 'Sopen10g035950' => 'spe', 'Sp3g07710' => 'spa', 'Sp4g27420' => 'spa', 'Sp5g02450' => 'spa', 'Sp6g01280' => 'spa', 'Sp6g38480' => 'spa', 'Sp7g20780' => 'spa', 'TAR374G1413' => 'tar', 'TAR623G1777' => 'tar', 'TAR629G2370' => 'tar', 'TAR633G1759' => 'tar', 'TAR636G3387' => 'tar', 'THA.LOC104802447' => 'tha', 'THA.LOC104813916' => 'tha', 'THA.LOC104816423' => 'tha', 'THA.LOC104817246' => 'tha', 'THA.LOC104825895' => 'tha', 'Thecc.01G335200' => 'tca', 'Thecc.01G377400' => 'tca', 'Thecc.03G262200' => 'tca', 'Thecc.05G036800' => 'tca', 'Thecc.10G080500' => 'tca', 'Thecc.10G080800' => 'tca', 'Thhalv10001560m.g' => 'esa', 'Thhalv10006120m.g' => 'esa', 'Thhalv10014375m.g' => 'esa', 'Thhalv10021264m.g' => 'esa', 'Thhalv10028856m.g' => 'esa', 'TPR.G1914' => 'tpr', 'TPR.G4757' => 'tpr', 'TPR.G5595' => 'tpr', 'TWI14G0952' => 'twi', 'TWI14G1307' => 'twi', 'TWI38G2143' => 'twi', 'TWI59G0826' => 'twi', 'TWI77G0527' => 'twi', 'TWI81G0150' => 'twi', 'unitig_21.g21018' => 'ugi', 'unitig_26.g9725' => 'ugi', 'unitig_744.g24653' => 'ugi', 'unitig_749.g13778' => 'ugi', 'unitig_899.g15035' => 'ugi', 'vmacro04296' => 'vma', 'vmacro04852' => 'vma', 'vmacro13404' => 'vma', 'vmacro20169' => 'vma', 'vmacro21014' => 'vma', 'VMungo0331G0237' => 'vmu', 'VMungo0331G0706' => 'vmu', 'VMungo0331G1361' => 'vmu', 'VMungo0331G1489' => 'vmu', 'VMungo0540G1037' => 'vmu', 'VMungo0720G2487' => 'vmu', 'VMungo0720G2721' => 'vmu', 'Zm00001eb086860' => 'zma', 'Zm00001eb104760' => 'zma', 'Zm00001eb148220' => 'zma', 'Zm00001eb259030' => 'zma', 'Zm00001eb289590' => 'zma', 'Zm00001eb420150' => 'zma' ), 'gf_id' => 'HOM05D000968', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000968' ), 'data_identifier' => 'HOM05D000968', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000968', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p31690' => 'bna', 'A03p36040' => 'bna', 'A03p53730' => 'bna', 'A04p01410' => 'bna', 'A05p05420' => 'bna', 'A05p39630' => 'bna', 'A05p39640' => 'bna', 'A09p00970' => 'bna', 'A09p53060' => 'bna', 'A10p31890' => 'bna', 'Aa31LG10G15040' => 'aar', 'Aa31LG1G21090' => 'aar', 'Aa31LG1G26900' => 'aar', 'Aa31LG3G1820' => 'aar', 'Aa31LG5G1100' => 'aar', 'Aa31LG6G4740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2265' => 'aag', 'Actinidia07998' => 'ach', 'Actinidia11266' => 'ach', 'Actinidia12682' => 'ach', 'Actinidia26479' => 'ach', 'Actinidia31406' => 'ach', 'Actinidia32437' => 'ach', 'Actinidia38862' => 'ach', 'Ah.05g174230' => 'amhyb', 'Ah.05g179070' => 'amhyb', 'Ah.05g179090' => 'amhyb', 'Ah.12g059950' => 'amhyb', 'AL3G20480' => 'aly', 'AL4G44520' => 'aly', 'AL5G43110' => 'aly', 'AL6G13890' => 'aly', 'AL6G52620' => 'aly', 'AL7G30830' => 'aly', 'Aqoxy1G00899' => 'aox', 'Aqoxy5G04333' => 'aox', 'Aqoxy7G00641' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3IZ0NN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4EF6AW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W9P8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79GA3M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C43NQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFCU6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G95YVJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCHK29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LU1UG8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX91RN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGB4B1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8DA0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9H7JI' => 'arhy', 'AT3G09320' => 'ath', 'AT3G60800' => 'ath', 'AT4G00840' => 'ath', 'AT4G22750' => 'ath', 'AT5G04270' => 'ath', 'ATR0090G003' => 'atr', 'ATR0559G349' => 'atr', 'ATR0680G261' => 'atr', 'ATR0810G048' => 'atr', 'Atru.chr12.831' => 'acertr', 'Atru.chr5.303' => 'acertr', 'Atru.chr5.748' => 'acertr', 'Atru.chr8.1999' => 'acertr', 'Atru.chr9.1436' => 'acertr', 'AUR62004211' => 'cqu', 'AUR62004548' => 'cqu', 'AUR62013637' => 'cqu', 'AUR62022662' => 'cqu', 'AUR62025777' => 'cqu', 'AUR62042386' => 'cqu', 'BcaB01g02310' => 'bca', 'BcaB01g06062' => 'bca', 'BcaB02g08975' => 'bca', 'BcaB02g08980' => 'bca', 'BcaC01g04228' => 'bca', 'BcaC01g06830' => 'bca', 'BcaC02g10186' => 'bca', 'BcaC02g12214' => 'bca', 'BcaC04g24101' => 'bca', 'BcaC05g29520' => 'bca', 'BcaC05g29661' => 'bca', 'BcaC06g32130' => 'bca', 'BcaC06g32131' => 'bca', 'BcaC07g40601' => 'bca', 'BcaC07g42641' => 'bca', 'BcaNung01038' => 'bca', 'BcaNung01676' => 'bca', 'BcaNung02480' => 'bca', 'BcaNung07376' => 'bca', 'BolC3t16146H' => 'bol', 'BolC3t16637H' => 'bol', 'BolC4t22257H' => 'bol', 'BolC4t24728H' => 'bol', 'BolC5t34517H' => 'bol', 'BolC7t45703H' => 'bol', 'BolC8t51166H' => 'bol', 'BolC9t53038H' => 'bol', 'BolC9t60000H' => 'bol', 'BraA01t01345Z' => 'bra', 'BraA01t01346Z' => 'bra', 'BraA01t01348Z' => 'bra', 'BraA03t12347Z' => 'bra', 'BraA03t12775Z' => 'bra', 'BraA03t14439Z' => 'bra', 'BraA04t15860Z' => 'bra', 'BraA05t19511Z' => 'bra', 'BraA05t22746Z' => 'bra', 'BraA09t35767Z' => 'bra', 'BraA09t40732Z' => 'bra', 'BraA10t45233Z' => 'bra', 'C03p38720' => 'bna', 'C03p43680' => 'bna', 'C04p06350' => 'bna', 'C04p31800' => 'bna', 'C05p58680' => 'bna', 'C07p52110' => 'bna', 'C08p35760' => 'bna', 'C09p01050' => 'bna', 'C09p72600' => 'bna', 'CAN.G106.2' => 'can', 'CAN.G1482.1' => 'can', 'CAN.G324.12' => 'can', 'CAN.G388.20' => 'can', 'CAN.G412.7' => 'can', 'CAN.G694.32' => 'can', 'CAN.G92.12' => 'can', 'CANSAT11G2353' => 'cansat', 'CANSAT21G1398' => 'cansat', 'CANSAT56G2456' => 'cansat', 'CANSAT56G3031' => 'cansat', 'CANSAT56G4539' => 'cansat', 'CARHR083680' => 'chi', 'CARHR171190' => 'chi', 'CARHR209010' => 'chi', 'CARHR229680' => 'chi', 'CARHR249490' => 'chi', 'Carub.0003s0844' => 'cru', 'Carub.0005s2755' => 'cru', 'Carub.0006s0322' => 'cru', 'Carub.0006s3586' => 'cru', 'Carub.0007s1855' => 'cru', 'Ca_07808_v3' => 'car', 'Ca_09535_v3' => 'car', 'Ca_10548_v3' => 'car', 'Ca_19913_v3' => 'car', 'Ca_19916_v3' => 'car', 'Ca_19975_v3' => 'car', 'CBR_g22876' => 'cbr', 'CBR_g22879' => 'cbr', 'CBR_g38491' => 'cbr', 'CBR_g54185' => 'cbr', 'CBR_g54190' => 'cbr', 'Cc02_g11020' => 'ccan', 'Cc02_g23920' => 'ccan', 'Cc02_g39860' => 'ccan', 'Cc02_g39870' => 'ccan', 'Cc03_g06760' => 'ccan', 'Cc06_g02450' => 'ccan', 'Cc09_g09450' => 'ccan', 'CDE02G1959' => 'cde', 'CDE04G0600' => 'cde', 'CDE07G1996' => 'cde', 'CDE07G2078' => 'cde', 'CDE11G0611' => 'cde', 'Cfa001683' => 'cfa', 'Cfa001734' => 'cfa', 'Cfa001737' => 'cfa', 'Cfa003751' => 'cfa', 'Cfa012019' => 'cfa', 'Cfa017353' => 'cfa', 'Cfa017732' => 'cfa', 'Cfa022464' => 'cfa', 'Ciclev10012400m.g' => 'ccl', 'Ciclev10021242m.g' => 'ccl', 'Ciclev10021302m.g' => 'ccl', 'Ciclev10021463m.g' => 'ccl', 'Ciclev10032359m.g' => 'ccl', 'CiPaw.01G081000' => 'cil', 'CiPaw.01G262500' => 'cil', 'CiPaw.01G269800' => 'cil', 'CiPaw.02G168400' => 'cil', 'CiPaw.05G119500' => 'cil', 'CiPaw.11G147300' => 'cil', 'ClCG01G003630' => 'cla', 'ClCG05G000510' => 'cla', 'ClCG05G002300' => 'cla', 'ClCG08G007650' => 'cla', 'ClCG10G021250' => 'cla', 'COL.COLO4_06218' => 'col', 'COL.COLO4_12538' => 'col', 'COL.COLO4_14775' => 'col', 'COL.COLO4_23875' => 'col', 'Cpa.g.sc141.16' => 'cpa', 'Cpa.g.sc169.16' => 'cpa', 'Cpa.g.sc244.4' => 'cpa', 'Cpa.g.sc244.5' => 'cpa', 'Cpa.g.sc29.87' => 'cpa', 'Cpa.g.sc53.115' => 'cpa', 'Cre03.g207502' => 'cre', 'Cre06.g277000' => 'cre', 'Cre09.g394050' => 'cre', 'CsaV3_3G007680' => 'csa', 'CsaV3_3G009710' => 'csa', 'CsaV3_3G034790' => 'csa', 'CsaV3_5G003750' => 'csa', 'CsaV3_6G036620' => 'csa', 'CSS0002288' => 'camsi', 'CSS0011250' => 'camsi', 'CSS0021619' => 'camsi', 'CSS0046701' => 'camsi', 'DCAR_006420' => 'dca', 'DCAR_006865' => 'dca', 'DCAR_008558' => 'dca', 'DCAR_028754' => 'dca', 'DCAR_028755' => 'dca', 'Dinv31218' => 'din', 'Dinv32371' => 'din', 'Dinv34250' => 'din', 'Dinv37156' => 'din', 'Dinv43704' => 'din', 'Duzib093G1811' => 'dzi', 'Duzib106G1622' => 'dzi', 'Duzib114G0504' => 'dzi', 'Duzib128G0338' => 'dzi', 'Duzib128G1577' => 'dzi', 'Duzib133G0104' => 'dzi', 'Duzib133G1080' => 'dzi', 'Duzib138G0324' => 'dzi', 'Duzib138G0394' => 'dzi', 'Duzib205G0122' => 'dzi', 'Duzib268G1020' => 'dzi', 'Duzib268G1359' => 'dzi', 'ECA232G3929' => 'eca', 'ECA236G2210' => 'eca', 'ECA236G2287' => 'eca', 'ECA240G4568' => 'eca', 'ECA247G0894' => 'eca', 'EL10Ac1g00200' => 'bvu', 'EL10Ac1g00886' => 'bvu', 'EL10As1g23091' => 'bvu', 'EL10As1g23092' => 'bvu', 'Eucgr.A01284' => 'egr', 'Eucgr.A01285' => 'egr', 'Eucgr.D02456' => 'egr', 'Eucgr.E00018' => 'egr', 'Eucgr.E01439' => 'egr', 'Eucgr.G02859' => 'egr', 'FAN01G0168' => 'fan', 'FAN01G0453' => 'fan', 'FAN01G2761' => 'fan', 'FAN02G1239' => 'fan', 'FAN03G0645' => 'fan', 'FAN03G2707' => 'fan', 'FAN03G2978' => 'fan', 'FAN04G0227' => 'fan', 'FAN06G0091' => 'fan', 'FAN06G1418' => 'fan', 'FAN06G1512' => 'fan', 'FAN06G1986' => 'fan', 'FAN06G2905' => 'fan', 'FAN06G4325' => 'fan', 'FAN08G0033' => 'fan', 'FAN09G0642' => 'fan', 'FAN10G1763' => 'fan', 'FAN10G2026' => 'fan', 'FAN10G2513' => 'fan', 'FAN10G3402' => 'fan', 'FAN10G3564' => 'fan', 'FAN10G3987' => 'fan', 'FAN13G1490' => 'fan', 'FAN14G5857' => 'fan', 'FAN18G1188' => 'fan', 'FvH4_5g00750' => 'fve', 'FvH4_6g13410' => 'fve', 'FvH4_7g11740' => 'fve', 'FvH4_7g17410' => 'fve', 'FvH4_7g18860' => 'fve', 'Glyma.01G099100' => 'gma', 'Glyma.01G142300' => 'gma', 'Glyma.03G025500' => 'gma', 'Glyma.03G069700' => 'gma', 'Glyma.03G260000' => 'gma', 'Glyma.09G269800' => 'gma', 'Glyma.10G208700' => 'gma', 'Glyma.18G220400' => 'gma', 'Glyma.20G182000' => 'gma', 'Gohir.A01G221726' => 'ghi', 'Gohir.A07G134600' => 'ghi', 'Gohir.A07G146000' => 'ghi', 'Gohir.A08G173900' => 'ghi', 'Gohir.A09G194900' => 'ghi', 'Gohir.A10G204100' => 'ghi', 'Gohir.A11G080600' => 'ghi', 'Gohir.A11G327500' => 'ghi', 'Gohir.A12G101800' => 'ghi', 'Gohir.D01G211200' => 'ghi', 'Gohir.D07G139200' => 'ghi', 'Gohir.D07G152100' => 'ghi', 'Gohir.D08G192600' => 'ghi', 'Gohir.D09G189200' => 'ghi', 'Gohir.D10G212000' => 'ghi', 'Gohir.D11G085200' => 'ghi', 'Gohir.D11G346400' => 'ghi', 'Gohir.D12G104800' => 'ghi', 'Gorai.001G151300' => 'gra', 'Gorai.001G174100' => 'gra', 'Gorai.002G257000' => 'gra', 'Gorai.004G202600' => 'gra', 'Gorai.007G090900' => 'gra', 'Gorai.007G376700' => 'gra', 'Gorai.008G114100' => 'gra', 'Gorai.011G237900' => 'gra', 'GSVIVG01005450001' => 'vvi', 'GSVIVG01016232001' => 'vvi', 'GSVIVG01026157001' => 'vvi', 'GSVIVG01027419001' => 'vvi', 'GSVIVG01027631001' => 'vvi', 'GSVIVG01034143001' => 'vvi', 'HanXRQChr03g0093921' => 'han', 'HanXRQChr04g0120001' => 'han', 'HanXRQChr04g0122561' => 'han', 'HanXRQChr09g0246851' => 'han', 'HanXRQChr10g0293311' => 'han', 'HanXRQChr13g0425231' => 'han', 'HanXRQChr16g0532571' => 'han', 'Haze_09050' => 'cav', 'Haze_15715' => 'cav', 'Haze_15716' => 'cav', 'Haze_16803' => 'cav', 'Haze_16850' => 'cav', 'Hma1.2p1_0301F.1_g118655' => 'hma', 'Hma1.2p1_0309F.1_g120590' => 'hma', 'Hma1.2p1_0936F.1_g238900' => 'hma', 'Hma1.2p1_3552F.1_g336740' => 'hma', 'HPP92_003520' => 'vpl', 'HPP92_006628' => 'vpl', 'HPP92_006645' => 'vpl', 'HPP92_014669' => 'vpl', 'HPP92_015077' => 'vpl', 'Hund16742' => 'sun', 'Hund17022' => 'sun', 'Lalb_Chr02g0152131' => 'lal', 'Lalb_Chr05g0225371' => 'lal', 'Lalb_Chr07g0189841' => 'lal', 'Lalb_Chr07g0192961' => 'lal', 'Lalb_Chr12g0208221' => 'lal', 'Lalb_Chr13g0291211' => 'lal', 'Lalb_Chr13g0291781' => 'lal', 'Lalb_Chr18g0044651' => 'lal', 'Lalb_Chr21g0313731' => 'lal', 'Lj1g0022533' => 'lja', 'Lj2A18T50' => 'lonja', 'Lj2A92G93' => 'lonja', 'Lj3A965T73' => 'lonja', 'Lj3g0000673' => 'lja', 'Lj3g0002666' => 'lja', 'Lj4g0016985' => 'lja', 'Lj5g0003625' => 'lja', 'Lj7A529G36' => 'lonja', 'Lj9A569T49' => 'lonja', 'Lj9A604T63' => 'lonja', 'Lsat_1_v5_gn_3_132060' => 'lsa', 'Lsat_1_v5_gn_4_68941' => 'lsa', 'Lsat_1_v5_gn_5_95580' => 'lsa', 'Lsat_1_v5_gn_7_161' => 'lsa', 'Lsat_1_v5_gn_7_7041' => 'lsa', 'Lsat_1_v5_gn_9_33481' => 'lsa', 'Lsat_1_v5_gn_9_68260' => 'lsa', 'Manes.01G073100' => 'mes', 'Manes.01G266300' => 'mes', 'Manes.02G033300' => 'mes', 'Manes.05G017900' => 'mes', 'Manes.05G046100' => 'mes', 'Manes.08G080900' => 'mes', 'Manes.10G049400' => 'mes', 'Mapoly0009s0186' => 'mpo', 'Mapoly0036s0118' => 'mpo', 'Mapoly0101s0046' => 'mpo', 'MBI04_g30218_MAGBIO' => 'mbi', 'MBI04_g35564_MAGBIO' => 'mbi', 'MBI12_g34011_MAGBIO' => 'mbi', 'MBI14_g04655_MAGBIO' => 'mbi', 'MCO07G653' => 'mco', 'MCO10G173' => 'mco', 'MD01G1087100' => 'mdo', 'MD01G1104200' => 'mdo', 'MD02G1205100' => 'mdo', 'MD04G1079200' => 'mdo', 'MD04G1131400' => 'mdo', 'MD07G1121600' => 'mdo', 'MD07G1157300' => 'mdo', 'MD07G1171000' => 'mdo', 'MD12G1144500' => 'mdo', 'Medtr1g094610' => 'mtr', 'Medtr4g021795' => 'mtr', 'Medtr4g023760' => 'mtr', 'Medtr7g118050' => 'mtr', 'MELO3C005582.2' => 'cme', 'MELO3C005989.2' => 'cme', 'MELO3C006192.2' => 'cme', 'MELO3C009248.2' => 'cme', 'MELO3C019817.2' => 'cme', 'Migut.B01625' => 'egut', 'Migut.B01915' => 'egut', 'Migut.F01721' => 'egut', 'Migut.J00314' => 'egut', 'MSTRG.20742' => 'ama', 'MSTRG.8134' => 'ama', 'Nitab4.5_0000096g0010' => 'nta', 'Nitab4.5_0000202g0030' => 'nta', 'Nitab4.5_0000216g0370' => 'nta', 'Nitab4.5_0000457g0230' => 'nta', 'Nitab4.5_0001702g0170' => 'nta', 'Nitab4.5_0003607g0010' => 'nta', 'Nitab4.5_0004917g0020' => 'nta', 'Nitab4.5_0007059g0010' => 'nta', 'Nitab4.5_0007184g0010' => 'nta', 'Nitab4.5_0007346g0020' => 'nta', 'Nn1g00410' => 'nnu', 'Nn1g01252' => 'nnu', 'Nn2g11168' => 'nnu', 'Nn2g13403' => 'nnu', 'Nn2g13760' => 'nnu', 'Nn4g26380' => 'nnu', 'Oeu000806.2' => 'oeu', 'Oeu005788.1' => 'oeu', 'Oeu006900.3' => 'oeu', 'Oeu007797.1' => 'oeu', 'Oeu011932.1' => 'oeu', 'Oeu022739.1' => 'oeu', 'Oeu037918.1' => 'oeu', 'Oeu055490.2' => 'oeu', 'Os01g0844400' => 'osa', 'Os02g0819100' => 'osa', 'Os03g0804300' => 'osa', 'Os05g0458000' => 'osa', 'Os07g0467800' => 'osa', 'Os12g0602200' => 'osa', 'Peaxi162Scf00013g03444' => 'pax', 'Peaxi162Scf00094g01120' => 'pax', 'Peaxi162Scf00191g01211' => 'pax', 'Peaxi162Scf00238g01110' => 'pax', 'Peaxi162Scf00330g00719' => 'pax', 'Peaxi162Scf00627g00018' => 'pax', 'PGR031G2686' => 'pgr', 'PGR042G0809' => 'pgr', 'PGR142G0193' => 'pgr', 'PGSC0003DMG400011066' => 'stu', 'PGSC0003DMG400012041' => 'stu', 'PGSC0003DMG400013678' => 'stu', 'PGSC0003DMG400023477' => 'stu', 'PGSC0003DMG400025956' => 'stu', 'PGSC0003DMG401019151' => 'stu', 'Phvul.006G116400' => 'pvu', 'Phvul.007G097300' => 'pvu', 'Phvul.010G015000' => 'pvu', 'Phvul.010G083900' => 'pvu', 'Potri.001G117100' => 'ptr', 'Potri.002G147300' => 'ptr', 'Potri.003G115600' => 'ptr', 'Potri.006G087400' => 'ptr', 'Potri.010G226100' => 'ptr', 'Potri.014G069200' => 'ptr', 'Potri.014G104000' => 'ptr', 'Potri.016G100200' => 'ptr', 'Pp3c10_20450' => 'ppa', 'Pp3c1_42400' => 'ppa', 'Pp3c3_24390' => 'ppa', 'Pp3c3_2860' => 'ppa', 'PRCOL_00003193' => 'pco', 'Prupe.2G144500' => 'ppe', 'Prupe.2G195700' => 'ppe', 'Prupe.2G209800' => 'ppe', 'Prupe.5G080000' => 'ppe', 'Prupe.6G257900' => 'ppe', 'Psat3g001160' => 'psa', 'Psat6g181880' => 'psa', 'Psat7g233720' => 'psa', 'PSO063G7587' => 'pso', 'PSO339G2145' => 'pso', 'PSO339G3369' => 'pso', 'PSO478G2747' => 'pso', 'PSO513G0140' => 'pso', 'PSO782G1614' => 'pso', 'PSO782G4889' => 'pso', 'PSO782G5485' => 'pso', 'PSO801G0241' => 'pso', 'QL07p048854' => 'qlo', 'QL08p046745' => 'qlo', 'QL08p052606' => 'qlo', 'QL08p053414' => 'qlo', 'QL08p054868' => 'qlo', 'RcHm_v2.0_Chr1g0350251' => 'rch', 'RcHm_v2.0_Chr1g0360851' => 'rch', 'RcHm_v2.0_Chr1g0362791' => 'rch', 'RcHm_v2.0_Chr3g0466281' => 'rch', 'RcHm_v2.0_Chr7g0201481' => 'rch', 'Rhsim01G0148600' => 'rsi', 'Rhsim05G0194400' => 'rsi', 'Rhsim07G0000700' => 'rsi', 'Rhsim07G0000800' => 'rsi', 'Rhsim07G0027900' => 'rsi', 'Rhsim09G0149500' => 'rsi', 'RhsimUnG0186900' => 'rsi', 'Sabra01G0089900' => 'sbr', 'Sabra02G0114700' => 'sbr', 'Sabra02G0116300' => 'sbr', 'Sabra03G0080100' => 'sbr', 'Sabra08G0024300' => 'sbr', 'Sabra10G0174300' => 'sbr', 'Sabra14G0048900' => 'sbr', 'Sabra14G0076500' => 'sbr', 'SalBow5G2513' => 'sbo', 'Sc01g0002300' => 'sci', 'Sc01g0004450' => 'sci', 'Sc06g0001680' => 'sci', 'Sc23g0003580' => 'sci', 'Sed0000913' => 'sed', 'Sed0001655' => 'sed', 'Sed0007745' => 'sed', 'Sed0010951' => 'sed', 'Sed0017599' => 'sed', 'Sed0021405' => 'sed', 'Sed0022810' => 'sed', 'SEGI_07099' => 'sgi', 'SEGI_11931' => 'sgi', 'SEGI_13187' => 'sgi', 'SEGI_29958' => 'sgi', 'SEGI_36351' => 'sgi', 'SGA_v2.0_scaffold126G33770' => 'sas', 'SGA_v2.0_scaffold153G37003' => 'sas', 'SGA_v2.0_scaffold2G01359' => 'sas', 'SGA_v2.0_scaffold5G03064' => 'sas', 'SGA_v2.0_scaffold95G28903' => 'sas', 'SHI12701' => 'shi', 'SHI26410' => 'shi', 'SHI38997' => 'shi', 'SHI53759' => 'shi', 'SHI53886' => 'shi', 'SHI54714' => 'shi', 'SMO011G0041' => 'smo', 'SMO146G0251' => 'smo', 'SMO160G0004' => 'smo', 'SMO174G0057' => 'smo', 'SMO244G0089' => 'smo', 'SMO296G0011' => 'smo', 'Solyc01g091280.3' => 'sly', 'Solyc05g047610.3' => 'sly', 'Solyc05g047640.3' => 'sly', 'Solyc05g055630.3' => 'sly', 'Solyc10g018160.2' => 'sly', 'Solyc10g084820.2' => 'sly', 'Solyc10g086565.2' => 'sly', 'Sopen01g037030' => 'spe', 'Sopen05g027920' => 'spe', 'Sopen05g034070' => 'spe', 'Sopen10g007260' => 'spe', 'Sopen10g034260' => 'spe', 'Sopen10g035950' => 'spe', 'Sp3g07710' => 'spa', 'Sp4g27420' => 'spa', 'Sp5g02450' => 'spa', 'Sp6g01280' => 'spa', 'Sp6g38480' => 'spa', 'Sp7g20780' => 'spa', 'TAR374G1413' => 'tar', 'TAR623G1777' => 'tar', 'TAR629G2370' => 'tar', 'TAR633G1759' => 'tar', 'TAR636G3387' => 'tar', 'THA.LOC104802447' => 'tha', 'THA.LOC104813916' => 'tha', 'THA.LOC104816423' => 'tha', 'THA.LOC104817246' => 'tha', 'THA.LOC104825895' => 'tha', 'Thecc.01G335200' => 'tca', 'Thecc.01G377400' => 'tca', 'Thecc.03G262200' => 'tca', 'Thecc.05G036800' => 'tca', 'Thecc.10G080500' => 'tca', 'Thecc.10G080800' => 'tca', 'Thhalv10001560m.g' => 'esa', 'Thhalv10006120m.g' => 'esa', 'Thhalv10014375m.g' => 'esa', 'Thhalv10021264m.g' => 'esa', 'Thhalv10028856m.g' => 'esa', 'TPR.G1914' => 'tpr', 'TPR.G4757' => 'tpr', 'TPR.G5595' => 'tpr', 'TWI14G0952' => 'twi', 'TWI14G1307' => 'twi', 'TWI38G2143' => 'twi', 'TWI59G0826' => 'twi', 'TWI77G0527' => 'twi', 'TWI81G0150' => 'twi', 'unitig_21.g21018' => 'ugi', 'unitig_26.g9725' => 'ugi', 'unitig_744.g24653' => 'ugi', 'unitig_749.g13778' => 'ugi', 'unitig_899.g15035' => 'ugi', 'vmacro04296' => 'vma', 'vmacro04852' => 'vma', 'vmacro13404' => 'vma', 'vmacro20169' => 'vma', 'vmacro21014' => 'vma', 'VMungo0331G0237' => 'vmu', 'VMungo0331G0706' => 'vmu', 'VMungo0331G1361' => 'vmu', 'VMungo0331G1489' => 'vmu', 'VMungo0540G1037' => 'vmu', 'VMungo0720G2487' => 'vmu', 'VMungo0720G2721' => 'vmu', 'Zm00001eb086860' => 'zma', 'Zm00001eb104760' => 'zma', 'Zm00001eb148220' => 'zma', 'Zm00001eb259030' => 'zma', 'Zm00001eb289590' => 'zma', 'Zm00001eb420150' => 'zma' ) $gf_id = 'HOM05D000968' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000968' ) $data_identifier = 'HOM05D000968' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 19, 'bol' => (int) 9, 'bra' => (int) 12, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 5, 'ccan' => (int) 7, 'cde' => (int) 5, 'cfa' => (int) 8, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 4, 'dca' => (int) 5, 'din' => (int) 5, 'dzi' => (int) 12, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 25, 'fve' => (int) 5, 'gma' => (int) 9, 'ghi' => (int) 18, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 7, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 5, 'sun' => (int) 2, 'lal' => (int) 9, 'lja' => (int) 5, 'lonja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 9, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 2, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 3, 'stu' => (int) 6, 'pvu' => (int) 4, 'ptr' => (int) 8, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 3, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 1, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 5, 'sas' => (int) 5, 'shi' => (int) 6, 'smo' => (int) 6, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 3, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420150' $species_info = array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ) $local_species = 'sun' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000968', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p31690' => 'bna', 'A03p36040' => 'bna', 'A03p53730' => 'bna', 'A04p01410' => 'bna', 'A05p05420' => 'bna', 'A05p39630' => 'bna', 'A05p39640' => 'bna', 'A09p00970' => 'bna', 'A09p53060' => 'bna', 'A10p31890' => 'bna', 'Aa31LG10G15040' => 'aar', 'Aa31LG1G21090' => 'aar', 'Aa31LG1G26900' => 'aar', 'Aa31LG3G1820' => 'aar', 'Aa31LG5G1100' => 'aar', 'Aa31LG6G4740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2265' => 'aag', 'Actinidia07998' => 'ach', 'Actinidia11266' => 'ach', 'Actinidia12682' => 'ach', 'Actinidia26479' => 'ach', 'Actinidia31406' => 'ach', 'Actinidia32437' => 'ach', 'Actinidia38862' => 'ach', 'Ah.05g174230' => 'amhyb', 'Ah.05g179070' => 'amhyb', 'Ah.05g179090' => 'amhyb', 'Ah.12g059950' => 'amhyb', 'AL3G20480' => 'aly', 'AL4G44520' => 'aly', 'AL5G43110' => 'aly', 'AL6G13890' => 'aly', 'AL6G52620' => 'aly', 'AL7G30830' => 'aly', 'Aqoxy1G00899' => 'aox', 'Aqoxy5G04333' => 'aox', 'Aqoxy7G00641' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3IZ0NN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4EF6AW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W9P8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79GA3M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C43NQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFCU6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G95YVJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCHK29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LU1UG8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX91RN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGB4B1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8DA0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9H7JI' => 'arhy', 'AT3G09320' => 'ath', 'AT3G60800' => 'ath', 'AT4G00840' => 'ath', 'AT4G22750' => 'ath', 'AT5G04270' => 'ath', 'ATR0090G003' => 'atr', 'ATR0559G349' => 'atr', 'ATR0680G261' => 'atr', 'ATR0810G048' => 'atr', 'Atru.chr12.831' => 'acertr', 'Atru.chr5.303' => 'acertr', 'Atru.chr5.748' => 'acertr', 'Atru.chr8.1999' => 'acertr', 'Atru.chr9.1436' => 'acertr', 'AUR62004211' => 'cqu', 'AUR62004548' => 'cqu', 'AUR62013637' => 'cqu', 'AUR62022662' => 'cqu', 'AUR62025777' => 'cqu', 'AUR62042386' => 'cqu', 'BcaB01g02310' => 'bca', 'BcaB01g06062' => 'bca', 'BcaB02g08975' => 'bca', 'BcaB02g08980' => 'bca', 'BcaC01g04228' => 'bca', 'BcaC01g06830' => 'bca', 'BcaC02g10186' => 'bca', 'BcaC02g12214' => 'bca', 'BcaC04g24101' => 'bca', 'BcaC05g29520' => 'bca', 'BcaC05g29661' => 'bca', 'BcaC06g32130' => 'bca', 'BcaC06g32131' => 'bca', 'BcaC07g40601' => 'bca', 'BcaC07g42641' => 'bca', 'BcaNung01038' => 'bca', 'BcaNung01676' => 'bca', 'BcaNung02480' => 'bca', 'BcaNung07376' => 'bca', 'BolC3t16146H' => 'bol', 'BolC3t16637H' => 'bol', 'BolC4t22257H' => 'bol', 'BolC4t24728H' => 'bol', 'BolC5t34517H' => 'bol', 'BolC7t45703H' => 'bol', 'BolC8t51166H' => 'bol', 'BolC9t53038H' => 'bol', 'BolC9t60000H' => 'bol', 'BraA01t01345Z' => 'bra', 'BraA01t01346Z' => 'bra', 'BraA01t01348Z' => 'bra', 'BraA03t12347Z' => 'bra', 'BraA03t12775Z' => 'bra', 'BraA03t14439Z' => 'bra', 'BraA04t15860Z' => 'bra', 'BraA05t19511Z' => 'bra', 'BraA05t22746Z' => 'bra', 'BraA09t35767Z' => 'bra', 'BraA09t40732Z' => 'bra', 'BraA10t45233Z' => 'bra', 'C03p38720' => 'bna', 'C03p43680' => 'bna', 'C04p06350' => 'bna', 'C04p31800' => 'bna', 'C05p58680' => 'bna', 'C07p52110' => 'bna', 'C08p35760' => 'bna', 'C09p01050' => 'bna', 'C09p72600' => 'bna', 'CAN.G106.2' => 'can', 'CAN.G1482.1' => 'can', 'CAN.G324.12' => 'can', 'CAN.G388.20' => 'can', 'CAN.G412.7' => 'can', 'CAN.G694.32' => 'can', 'CAN.G92.12' => 'can', 'CANSAT11G2353' => 'cansat', 'CANSAT21G1398' => 'cansat', 'CANSAT56G2456' => 'cansat', 'CANSAT56G3031' => 'cansat', 'CANSAT56G4539' => 'cansat', 'CARHR083680' => 'chi', 'CARHR171190' => 'chi', 'CARHR209010' => 'chi', 'CARHR229680' => 'chi', 'CARHR249490' => 'chi', 'Carub.0003s0844' => 'cru', 'Carub.0005s2755' => 'cru', 'Carub.0006s0322' => 'cru', 'Carub.0006s3586' => 'cru', 'Carub.0007s1855' => 'cru', 'Ca_07808_v3' => 'car', 'Ca_09535_v3' => 'car', 'Ca_10548_v3' => 'car', 'Ca_19913_v3' => 'car', 'Ca_19916_v3' => 'car', 'Ca_19975_v3' => 'car', 'CBR_g22876' => 'cbr', 'CBR_g22879' => 'cbr', 'CBR_g38491' => 'cbr', 'CBR_g54185' => 'cbr', 'CBR_g54190' => 'cbr', 'Cc02_g11020' => 'ccan', 'Cc02_g23920' => 'ccan', 'Cc02_g39860' => 'ccan', 'Cc02_g39870' => 'ccan', 'Cc03_g06760' => 'ccan', 'Cc06_g02450' => 'ccan', 'Cc09_g09450' => 'ccan', 'CDE02G1959' => 'cde', 'CDE04G0600' => 'cde', 'CDE07G1996' => 'cde', 'CDE07G2078' => 'cde', 'CDE11G0611' => 'cde', 'Cfa001683' => 'cfa', 'Cfa001734' => 'cfa', 'Cfa001737' => 'cfa', 'Cfa003751' => 'cfa', 'Cfa012019' => 'cfa', 'Cfa017353' => 'cfa', 'Cfa017732' => 'cfa', 'Cfa022464' => 'cfa', 'Ciclev10012400m.g' => 'ccl', 'Ciclev10021242m.g' => 'ccl', 'Ciclev10021302m.g' => 'ccl', 'Ciclev10021463m.g' => 'ccl', 'Ciclev10032359m.g' => 'ccl', 'CiPaw.01G081000' => 'cil', 'CiPaw.01G262500' => 'cil', 'CiPaw.01G269800' => 'cil', 'CiPaw.02G168400' => 'cil', 'CiPaw.05G119500' => 'cil', 'CiPaw.11G147300' => 'cil', 'ClCG01G003630' => 'cla', 'ClCG05G000510' => 'cla', 'ClCG05G002300' => 'cla', 'ClCG08G007650' => 'cla', 'ClCG10G021250' => 'cla', 'COL.COLO4_06218' => 'col', 'COL.COLO4_12538' => 'col', 'COL.COLO4_14775' => 'col', 'COL.COLO4_23875' => 'col', 'Cpa.g.sc141.16' => 'cpa', 'Cpa.g.sc169.16' => 'cpa', 'Cpa.g.sc244.4' => 'cpa', 'Cpa.g.sc244.5' => 'cpa', 'Cpa.g.sc29.87' => 'cpa', 'Cpa.g.sc53.115' => 'cpa', 'Cre03.g207502' => 'cre', 'Cre06.g277000' => 'cre', 'Cre09.g394050' => 'cre', 'CsaV3_3G007680' => 'csa', 'CsaV3_3G009710' => 'csa', 'CsaV3_3G034790' => 'csa', 'CsaV3_5G003750' => 'csa', 'CsaV3_6G036620' => 'csa', 'CSS0002288' => 'camsi', 'CSS0011250' => 'camsi', 'CSS0021619' => 'camsi', 'CSS0046701' => 'camsi', 'DCAR_006420' => 'dca', 'DCAR_006865' => 'dca', 'DCAR_008558' => 'dca', 'DCAR_028754' => 'dca', 'DCAR_028755' => 'dca', 'Dinv31218' => 'din', 'Dinv32371' => 'din', 'Dinv34250' => 'din', 'Dinv37156' => 'din', 'Dinv43704' => 'din', 'Duzib093G1811' => 'dzi', 'Duzib106G1622' => 'dzi', 'Duzib114G0504' => 'dzi', 'Duzib128G0338' => 'dzi', 'Duzib128G1577' => 'dzi', 'Duzib133G0104' => 'dzi', 'Duzib133G1080' => 'dzi', 'Duzib138G0324' => 'dzi', 'Duzib138G0394' => 'dzi', 'Duzib205G0122' => 'dzi', 'Duzib268G1020' => 'dzi', 'Duzib268G1359' => 'dzi', 'ECA232G3929' => 'eca', 'ECA236G2210' => 'eca', 'ECA236G2287' => 'eca', 'ECA240G4568' => 'eca', 'ECA247G0894' => 'eca', 'EL10Ac1g00200' => 'bvu', 'EL10Ac1g00886' => 'bvu', 'EL10As1g23091' => 'bvu', 'EL10As1g23092' => 'bvu', 'Eucgr.A01284' => 'egr', 'Eucgr.A01285' => 'egr', 'Eucgr.D02456' => 'egr', 'Eucgr.E00018' => 'egr', 'Eucgr.E01439' => 'egr', 'Eucgr.G02859' => 'egr', 'FAN01G0168' => 'fan', 'FAN01G0453' => 'fan', 'FAN01G2761' => 'fan', 'FAN02G1239' => 'fan', 'FAN03G0645' => 'fan', 'FAN03G2707' => 'fan', 'FAN03G2978' => 'fan', 'FAN04G0227' => 'fan', 'FAN06G0091' => 'fan', 'FAN06G1418' => 'fan', 'FAN06G1512' => 'fan', 'FAN06G1986' => 'fan', 'FAN06G2905' => 'fan', 'FAN06G4325' => 'fan', 'FAN08G0033' => 'fan', 'FAN09G0642' => 'fan', 'FAN10G1763' => 'fan', 'FAN10G2026' => 'fan', 'FAN10G2513' => 'fan', 'FAN10G3402' => 'fan', 'FAN10G3564' => 'fan', 'FAN10G3987' => 'fan', 'FAN13G1490' => 'fan', 'FAN14G5857' => 'fan', 'FAN18G1188' => 'fan', 'FvH4_5g00750' => 'fve', 'FvH4_6g13410' => 'fve', 'FvH4_7g11740' => 'fve', 'FvH4_7g17410' => 'fve', 'FvH4_7g18860' => 'fve', 'Glyma.01G099100' => 'gma', 'Glyma.01G142300' => 'gma', 'Glyma.03G025500' => 'gma', 'Glyma.03G069700' => 'gma', 'Glyma.03G260000' => 'gma', 'Glyma.09G269800' => 'gma', 'Glyma.10G208700' => 'gma', 'Glyma.18G220400' => 'gma', 'Glyma.20G182000' => 'gma', 'Gohir.A01G221726' => 'ghi', 'Gohir.A07G134600' => 'ghi', 'Gohir.A07G146000' => 'ghi', 'Gohir.A08G173900' => 'ghi', 'Gohir.A09G194900' => 'ghi', 'Gohir.A10G204100' => 'ghi', 'Gohir.A11G080600' => 'ghi', 'Gohir.A11G327500' => 'ghi', 'Gohir.A12G101800' => 'ghi', 'Gohir.D01G211200' => 'ghi', 'Gohir.D07G139200' => 'ghi', 'Gohir.D07G152100' => 'ghi', 'Gohir.D08G192600' => 'ghi', 'Gohir.D09G189200' => 'ghi', 'Gohir.D10G212000' => 'ghi', 'Gohir.D11G085200' => 'ghi', 'Gohir.D11G346400' => 'ghi', 'Gohir.D12G104800' => 'ghi', 'Gorai.001G151300' => 'gra', 'Gorai.001G174100' => 'gra', 'Gorai.002G257000' => 'gra', 'Gorai.004G202600' => 'gra', 'Gorai.007G090900' => 'gra', 'Gorai.007G376700' => 'gra', 'Gorai.008G114100' => 'gra', 'Gorai.011G237900' => 'gra', 'GSVIVG01005450001' => 'vvi', 'GSVIVG01016232001' => 'vvi', 'GSVIVG01026157001' => 'vvi', 'GSVIVG01027419001' => 'vvi', 'GSVIVG01027631001' => 'vvi', 'GSVIVG01034143001' => 'vvi', 'HanXRQChr03g0093921' => 'han', 'HanXRQChr04g0120001' => 'han', 'HanXRQChr04g0122561' => 'han', 'HanXRQChr09g0246851' => 'han', 'HanXRQChr10g0293311' => 'han', 'HanXRQChr13g0425231' => 'han', 'HanXRQChr16g0532571' => 'han', 'Haze_09050' => 'cav', 'Haze_15715' => 'cav', 'Haze_15716' => 'cav', 'Haze_16803' => 'cav', 'Haze_16850' => 'cav', 'Hma1.2p1_0301F.1_g118655' => 'hma', 'Hma1.2p1_0309F.1_g120590' => 'hma', 'Hma1.2p1_0936F.1_g238900' => 'hma', 'Hma1.2p1_3552F.1_g336740' => 'hma', 'HPP92_003520' => 'vpl', 'HPP92_006628' => 'vpl', 'HPP92_006645' => 'vpl', 'HPP92_014669' => 'vpl', 'HPP92_015077' => 'vpl', 'Hund16742' => 'sun', 'Hund17022' => 'sun', 'Lalb_Chr02g0152131' => 'lal', 'Lalb_Chr05g0225371' => 'lal', 'Lalb_Chr07g0189841' => 'lal', 'Lalb_Chr07g0192961' => 'lal', 'Lalb_Chr12g0208221' => 'lal', 'Lalb_Chr13g0291211' => 'lal', 'Lalb_Chr13g0291781' => 'lal', 'Lalb_Chr18g0044651' => 'lal', 'Lalb_Chr21g0313731' => 'lal', 'Lj1g0022533' => 'lja', 'Lj2A18T50' => 'lonja', 'Lj2A92G93' => 'lonja', 'Lj3A965T73' => 'lonja', 'Lj3g0000673' => 'lja', 'Lj3g0002666' => 'lja', 'Lj4g0016985' => 'lja', 'Lj5g0003625' => 'lja', 'Lj7A529G36' => 'lonja', 'Lj9A569T49' => 'lonja', 'Lj9A604T63' => 'lonja', 'Lsat_1_v5_gn_3_132060' => 'lsa', 'Lsat_1_v5_gn_4_68941' => 'lsa', 'Lsat_1_v5_gn_5_95580' => 'lsa', 'Lsat_1_v5_gn_7_161' => 'lsa', 'Lsat_1_v5_gn_7_7041' => 'lsa', 'Lsat_1_v5_gn_9_33481' => 'lsa', 'Lsat_1_v5_gn_9_68260' => 'lsa', 'Manes.01G073100' => 'mes', 'Manes.01G266300' => 'mes', 'Manes.02G033300' => 'mes', 'Manes.05G017900' => 'mes', 'Manes.05G046100' => 'mes', 'Manes.08G080900' => 'mes', 'Manes.10G049400' => 'mes', 'Mapoly0009s0186' => 'mpo', 'Mapoly0036s0118' => 'mpo', 'Mapoly0101s0046' => 'mpo', 'MBI04_g30218_MAGBIO' => 'mbi', 'MBI04_g35564_MAGBIO' => 'mbi', 'MBI12_g34011_MAGBIO' => 'mbi', 'MBI14_g04655_MAGBIO' => 'mbi', 'MCO07G653' => 'mco', 'MCO10G173' => 'mco', 'MD01G1087100' => 'mdo', 'MD01G1104200' => 'mdo', 'MD02G1205100' => 'mdo', 'MD04G1079200' => 'mdo', 'MD04G1131400' => 'mdo', 'MD07G1121600' => 'mdo', 'MD07G1157300' => 'mdo', 'MD07G1171000' => 'mdo', 'MD12G1144500' => 'mdo', 'Medtr1g094610' => 'mtr', 'Medtr4g021795' => 'mtr', 'Medtr4g023760' => 'mtr', 'Medtr7g118050' => 'mtr', 'MELO3C005582.2' => 'cme', 'MELO3C005989.2' => 'cme', 'MELO3C006192.2' => 'cme', 'MELO3C009248.2' => 'cme', 'MELO3C019817.2' => 'cme', 'Migut.B01625' => 'egut', 'Migut.B01915' => 'egut', 'Migut.F01721' => 'egut', 'Migut.J00314' => 'egut', 'MSTRG.20742' => 'ama', 'MSTRG.8134' => 'ama', 'Nitab4.5_0000096g0010' => 'nta', 'Nitab4.5_0000202g0030' => 'nta', 'Nitab4.5_0000216g0370' => 'nta', 'Nitab4.5_0000457g0230' => 'nta', 'Nitab4.5_0001702g0170' => 'nta', 'Nitab4.5_0003607g0010' => 'nta', 'Nitab4.5_0004917g0020' => 'nta', 'Nitab4.5_0007059g0010' => 'nta', 'Nitab4.5_0007184g0010' => 'nta', 'Nitab4.5_0007346g0020' => 'nta', 'Nn1g00410' => 'nnu', 'Nn1g01252' => 'nnu', 'Nn2g11168' => 'nnu', 'Nn2g13403' => 'nnu', 'Nn2g13760' => 'nnu', 'Nn4g26380' => 'nnu', 'Oeu000806.2' => 'oeu', 'Oeu005788.1' => 'oeu', 'Oeu006900.3' => 'oeu', 'Oeu007797.1' => 'oeu', 'Oeu011932.1' => 'oeu', 'Oeu022739.1' => 'oeu', 'Oeu037918.1' => 'oeu', 'Oeu055490.2' => 'oeu', 'Os01g0844400' => 'osa', 'Os02g0819100' => 'osa', 'Os03g0804300' => 'osa', 'Os05g0458000' => 'osa', 'Os07g0467800' => 'osa', 'Os12g0602200' => 'osa', 'Peaxi162Scf00013g03444' => 'pax', 'Peaxi162Scf00094g01120' => 'pax', 'Peaxi162Scf00191g01211' => 'pax', 'Peaxi162Scf00238g01110' => 'pax', 'Peaxi162Scf00330g00719' => 'pax', 'Peaxi162Scf00627g00018' => 'pax', 'PGR031G2686' => 'pgr', 'PGR042G0809' => 'pgr', 'PGR142G0193' => 'pgr', 'PGSC0003DMG400011066' => 'stu', 'PGSC0003DMG400012041' => 'stu', 'PGSC0003DMG400013678' => 'stu', 'PGSC0003DMG400023477' => 'stu', 'PGSC0003DMG400025956' => 'stu', 'PGSC0003DMG401019151' => 'stu', 'Phvul.006G116400' => 'pvu', 'Phvul.007G097300' => 'pvu', 'Phvul.010G015000' => 'pvu', 'Phvul.010G083900' => 'pvu', 'Potri.001G117100' => 'ptr', 'Potri.002G147300' => 'ptr', 'Potri.003G115600' => 'ptr', 'Potri.006G087400' => 'ptr', 'Potri.010G226100' => 'ptr', 'Potri.014G069200' => 'ptr', 'Potri.014G104000' => 'ptr', 'Potri.016G100200' => 'ptr', 'Pp3c10_20450' => 'ppa', 'Pp3c1_42400' => 'ppa', 'Pp3c3_24390' => 'ppa', 'Pp3c3_2860' => 'ppa', 'PRCOL_00003193' => 'pco', 'Prupe.2G144500' => 'ppe', 'Prupe.2G195700' => 'ppe', 'Prupe.2G209800' => 'ppe', 'Prupe.5G080000' => 'ppe', 'Prupe.6G257900' => 'ppe', 'Psat3g001160' => 'psa', 'Psat6g181880' => 'psa', 'Psat7g233720' => 'psa', 'PSO063G7587' => 'pso', 'PSO339G2145' => 'pso', 'PSO339G3369' => 'pso', 'PSO478G2747' => 'pso', 'PSO513G0140' => 'pso', 'PSO782G1614' => 'pso', 'PSO782G4889' => 'pso', 'PSO782G5485' => 'pso', 'PSO801G0241' => 'pso', 'QL07p048854' => 'qlo', 'QL08p046745' => 'qlo', 'QL08p052606' => 'qlo', 'QL08p053414' => 'qlo', 'QL08p054868' => 'qlo', 'RcHm_v2.0_Chr1g0350251' => 'rch', 'RcHm_v2.0_Chr1g0360851' => 'rch', 'RcHm_v2.0_Chr1g0362791' => 'rch', 'RcHm_v2.0_Chr3g0466281' => 'rch', 'RcHm_v2.0_Chr7g0201481' => 'rch', 'Rhsim01G0148600' => 'rsi', 'Rhsim05G0194400' => 'rsi', 'Rhsim07G0000700' => 'rsi', 'Rhsim07G0000800' => 'rsi', 'Rhsim07G0027900' => 'rsi', 'Rhsim09G0149500' => 'rsi', 'RhsimUnG0186900' => 'rsi', 'Sabra01G0089900' => 'sbr', 'Sabra02G0114700' => 'sbr', 'Sabra02G0116300' => 'sbr', 'Sabra03G0080100' => 'sbr', 'Sabra08G0024300' => 'sbr', 'Sabra10G0174300' => 'sbr', 'Sabra14G0048900' => 'sbr', 'Sabra14G0076500' => 'sbr', 'SalBow5G2513' => 'sbo', 'Sc01g0002300' => 'sci', 'Sc01g0004450' => 'sci', 'Sc06g0001680' => 'sci', 'Sc23g0003580' => 'sci', 'Sed0000913' => 'sed', 'Sed0001655' => 'sed', 'Sed0007745' => 'sed', 'Sed0010951' => 'sed', 'Sed0017599' => 'sed', 'Sed0021405' => 'sed', 'Sed0022810' => 'sed', 'SEGI_07099' => 'sgi', 'SEGI_11931' => 'sgi', 'SEGI_13187' => 'sgi', 'SEGI_29958' => 'sgi', 'SEGI_36351' => 'sgi', 'SGA_v2.0_scaffold126G33770' => 'sas', 'SGA_v2.0_scaffold153G37003' => 'sas', 'SGA_v2.0_scaffold2G01359' => 'sas', 'SGA_v2.0_scaffold5G03064' => 'sas', 'SGA_v2.0_scaffold95G28903' => 'sas', 'SHI12701' => 'shi', 'SHI26410' => 'shi', 'SHI38997' => 'shi', 'SHI53759' => 'shi', 'SHI53886' => 'shi', 'SHI54714' => 'shi', 'SMO011G0041' => 'smo', 'SMO146G0251' => 'smo', 'SMO160G0004' => 'smo', 'SMO174G0057' => 'smo', 'SMO244G0089' => 'smo', 'SMO296G0011' => 'smo', 'Solyc01g091280.3' => 'sly', 'Solyc05g047610.3' => 'sly', 'Solyc05g047640.3' => 'sly', 'Solyc05g055630.3' => 'sly', 'Solyc10g018160.2' => 'sly', 'Solyc10g084820.2' => 'sly', 'Solyc10g086565.2' => 'sly', 'Sopen01g037030' => 'spe', 'Sopen05g027920' => 'spe', 'Sopen05g034070' => 'spe', 'Sopen10g007260' => 'spe', 'Sopen10g034260' => 'spe', 'Sopen10g035950' => 'spe', 'Sp3g07710' => 'spa', 'Sp4g27420' => 'spa', 'Sp5g02450' => 'spa', 'Sp6g01280' => 'spa', 'Sp6g38480' => 'spa', 'Sp7g20780' => 'spa', 'TAR374G1413' => 'tar', 'TAR623G1777' => 'tar', 'TAR629G2370' => 'tar', 'TAR633G1759' => 'tar', 'TAR636G3387' => 'tar', 'THA.LOC104802447' => 'tha', 'THA.LOC104813916' => 'tha', 'THA.LOC104816423' => 'tha', 'THA.LOC104817246' => 'tha', 'THA.LOC104825895' => 'tha', 'Thecc.01G335200' => 'tca', 'Thecc.01G377400' => 'tca', 'Thecc.03G262200' => 'tca', 'Thecc.05G036800' => 'tca', 'Thecc.10G080500' => 'tca', 'Thecc.10G080800' => 'tca', 'Thhalv10001560m.g' => 'esa', 'Thhalv10006120m.g' => 'esa', 'Thhalv10014375m.g' => 'esa', 'Thhalv10021264m.g' => 'esa', 'Thhalv10028856m.g' => 'esa', 'TPR.G1914' => 'tpr', 'TPR.G4757' => 'tpr', 'TPR.G5595' => 'tpr', 'TWI14G0952' => 'twi', 'TWI14G1307' => 'twi', 'TWI38G2143' => 'twi', 'TWI59G0826' => 'twi', 'TWI77G0527' => 'twi', 'TWI81G0150' => 'twi', 'unitig_21.g21018' => 'ugi', 'unitig_26.g9725' => 'ugi', 'unitig_744.g24653' => 'ugi', 'unitig_749.g13778' => 'ugi', 'unitig_899.g15035' => 'ugi', 'vmacro04296' => 'vma', 'vmacro04852' => 'vma', 'vmacro13404' => 'vma', 'vmacro20169' => 'vma', 'vmacro21014' => 'vma', 'VMungo0331G0237' => 'vmu', 'VMungo0331G0706' => 'vmu', 'VMungo0331G1361' => 'vmu', 'VMungo0331G1489' => 'vmu', 'VMungo0540G1037' => 'vmu', 'VMungo0720G2487' => 'vmu', 'VMungo0720G2721' => 'vmu', 'Zm00001eb086860' => 'zma', 'Zm00001eb104760' => 'zma', 'Zm00001eb148220' => 'zma', 'Zm00001eb259030' => 'zma', 'Zm00001eb289590' => 'zma', 'Zm00001eb420150' => 'zma' ), 'gf_id' => 'HOM05D000968', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000968' ), 'data_identifier' => 'HOM05D000968', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000968', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p31690' => 'bna', 'A03p36040' => 'bna', 'A03p53730' => 'bna', 'A04p01410' => 'bna', 'A05p05420' => 'bna', 'A05p39630' => 'bna', 'A05p39640' => 'bna', 'A09p00970' => 'bna', 'A09p53060' => 'bna', 'A10p31890' => 'bna', 'Aa31LG10G15040' => 'aar', 'Aa31LG1G21090' => 'aar', 'Aa31LG1G26900' => 'aar', 'Aa31LG3G1820' => 'aar', 'Aa31LG5G1100' => 'aar', 'Aa31LG6G4740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2265' => 'aag', 'Actinidia07998' => 'ach', 'Actinidia11266' => 'ach', 'Actinidia12682' => 'ach', 'Actinidia26479' => 'ach', 'Actinidia31406' => 'ach', 'Actinidia32437' => 'ach', 'Actinidia38862' => 'ach', 'Ah.05g174230' => 'amhyb', 'Ah.05g179070' => 'amhyb', 'Ah.05g179090' => 'amhyb', 'Ah.12g059950' => 'amhyb', 'AL3G20480' => 'aly', 'AL4G44520' => 'aly', 'AL5G43110' => 'aly', 'AL6G13890' => 'aly', 'AL6G52620' => 'aly', 'AL7G30830' => 'aly', 'Aqoxy1G00899' => 'aox', 'Aqoxy5G04333' => 'aox', 'Aqoxy7G00641' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3IZ0NN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4EF6AW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W9P8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79GA3M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C43NQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFCU6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G95YVJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCHK29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LU1UG8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX91RN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGB4B1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8DA0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9H7JI' => 'arhy', 'AT3G09320' => 'ath', 'AT3G60800' => 'ath', 'AT4G00840' => 'ath', 'AT4G22750' => 'ath', 'AT5G04270' => 'ath', 'ATR0090G003' => 'atr', 'ATR0559G349' => 'atr', 'ATR0680G261' => 'atr', 'ATR0810G048' => 'atr', 'Atru.chr12.831' => 'acertr', 'Atru.chr5.303' => 'acertr', 'Atru.chr5.748' => 'acertr', 'Atru.chr8.1999' => 'acertr', 'Atru.chr9.1436' => 'acertr', 'AUR62004211' => 'cqu', 'AUR62004548' => 'cqu', 'AUR62013637' => 'cqu', 'AUR62022662' => 'cqu', 'AUR62025777' => 'cqu', 'AUR62042386' => 'cqu', 'BcaB01g02310' => 'bca', 'BcaB01g06062' => 'bca', 'BcaB02g08975' => 'bca', 'BcaB02g08980' => 'bca', 'BcaC01g04228' => 'bca', 'BcaC01g06830' => 'bca', 'BcaC02g10186' => 'bca', 'BcaC02g12214' => 'bca', 'BcaC04g24101' => 'bca', 'BcaC05g29520' => 'bca', 'BcaC05g29661' => 'bca', 'BcaC06g32130' => 'bca', 'BcaC06g32131' => 'bca', 'BcaC07g40601' => 'bca', 'BcaC07g42641' => 'bca', 'BcaNung01038' => 'bca', 'BcaNung01676' => 'bca', 'BcaNung02480' => 'bca', 'BcaNung07376' => 'bca', 'BolC3t16146H' => 'bol', 'BolC3t16637H' => 'bol', 'BolC4t22257H' => 'bol', 'BolC4t24728H' => 'bol', 'BolC5t34517H' => 'bol', 'BolC7t45703H' => 'bol', 'BolC8t51166H' => 'bol', 'BolC9t53038H' => 'bol', 'BolC9t60000H' => 'bol', 'BraA01t01345Z' => 'bra', 'BraA01t01346Z' => 'bra', 'BraA01t01348Z' => 'bra', 'BraA03t12347Z' => 'bra', 'BraA03t12775Z' => 'bra', 'BraA03t14439Z' => 'bra', 'BraA04t15860Z' => 'bra', 'BraA05t19511Z' => 'bra', 'BraA05t22746Z' => 'bra', 'BraA09t35767Z' => 'bra', 'BraA09t40732Z' => 'bra', 'BraA10t45233Z' => 'bra', 'C03p38720' => 'bna', 'C03p43680' => 'bna', 'C04p06350' => 'bna', 'C04p31800' => 'bna', 'C05p58680' => 'bna', 'C07p52110' => 'bna', 'C08p35760' => 'bna', 'C09p01050' => 'bna', 'C09p72600' => 'bna', 'CAN.G106.2' => 'can', 'CAN.G1482.1' => 'can', 'CAN.G324.12' => 'can', 'CAN.G388.20' => 'can', 'CAN.G412.7' => 'can', 'CAN.G694.32' => 'can', 'CAN.G92.12' => 'can', 'CANSAT11G2353' => 'cansat', 'CANSAT21G1398' => 'cansat', 'CANSAT56G2456' => 'cansat', 'CANSAT56G3031' => 'cansat', 'CANSAT56G4539' => 'cansat', 'CARHR083680' => 'chi', 'CARHR171190' => 'chi', 'CARHR209010' => 'chi', 'CARHR229680' => 'chi', 'CARHR249490' => 'chi', 'Carub.0003s0844' => 'cru', 'Carub.0005s2755' => 'cru', 'Carub.0006s0322' => 'cru', 'Carub.0006s3586' => 'cru', 'Carub.0007s1855' => 'cru', 'Ca_07808_v3' => 'car', 'Ca_09535_v3' => 'car', 'Ca_10548_v3' => 'car', 'Ca_19913_v3' => 'car', 'Ca_19916_v3' => 'car', 'Ca_19975_v3' => 'car', 'CBR_g22876' => 'cbr', 'CBR_g22879' => 'cbr', 'CBR_g38491' => 'cbr', 'CBR_g54185' => 'cbr', 'CBR_g54190' => 'cbr', 'Cc02_g11020' => 'ccan', 'Cc02_g23920' => 'ccan', 'Cc02_g39860' => 'ccan', 'Cc02_g39870' => 'ccan', 'Cc03_g06760' => 'ccan', 'Cc06_g02450' => 'ccan', 'Cc09_g09450' => 'ccan', 'CDE02G1959' => 'cde', 'CDE04G0600' => 'cde', 'CDE07G1996' => 'cde', 'CDE07G2078' => 'cde', 'CDE11G0611' => 'cde', 'Cfa001683' => 'cfa', 'Cfa001734' => 'cfa', 'Cfa001737' => 'cfa', 'Cfa003751' => 'cfa', 'Cfa012019' => 'cfa', 'Cfa017353' => 'cfa', 'Cfa017732' => 'cfa', 'Cfa022464' => 'cfa', 'Ciclev10012400m.g' => 'ccl', 'Ciclev10021242m.g' => 'ccl', 'Ciclev10021302m.g' => 'ccl', 'Ciclev10021463m.g' => 'ccl', 'Ciclev10032359m.g' => 'ccl', 'CiPaw.01G081000' => 'cil', 'CiPaw.01G262500' => 'cil', 'CiPaw.01G269800' => 'cil', 'CiPaw.02G168400' => 'cil', 'CiPaw.05G119500' => 'cil', 'CiPaw.11G147300' => 'cil', 'ClCG01G003630' => 'cla', 'ClCG05G000510' => 'cla', 'ClCG05G002300' => 'cla', 'ClCG08G007650' => 'cla', 'ClCG10G021250' => 'cla', 'COL.COLO4_06218' => 'col', 'COL.COLO4_12538' => 'col', 'COL.COLO4_14775' => 'col', 'COL.COLO4_23875' => 'col', 'Cpa.g.sc141.16' => 'cpa', 'Cpa.g.sc169.16' => 'cpa', 'Cpa.g.sc244.4' => 'cpa', 'Cpa.g.sc244.5' => 'cpa', 'Cpa.g.sc29.87' => 'cpa', 'Cpa.g.sc53.115' => 'cpa', 'Cre03.g207502' => 'cre', 'Cre06.g277000' => 'cre', 'Cre09.g394050' => 'cre', 'CsaV3_3G007680' => 'csa', 'CsaV3_3G009710' => 'csa', 'CsaV3_3G034790' => 'csa', 'CsaV3_5G003750' => 'csa', 'CsaV3_6G036620' => 'csa', 'CSS0002288' => 'camsi', 'CSS0011250' => 'camsi', 'CSS0021619' => 'camsi', 'CSS0046701' => 'camsi', 'DCAR_006420' => 'dca', 'DCAR_006865' => 'dca', 'DCAR_008558' => 'dca', 'DCAR_028754' => 'dca', 'DCAR_028755' => 'dca', 'Dinv31218' => 'din', 'Dinv32371' => 'din', 'Dinv34250' => 'din', 'Dinv37156' => 'din', 'Dinv43704' => 'din', 'Duzib093G1811' => 'dzi', 'Duzib106G1622' => 'dzi', 'Duzib114G0504' => 'dzi', 'Duzib128G0338' => 'dzi', 'Duzib128G1577' => 'dzi', 'Duzib133G0104' => 'dzi', 'Duzib133G1080' => 'dzi', 'Duzib138G0324' => 'dzi', 'Duzib138G0394' => 'dzi', 'Duzib205G0122' => 'dzi', 'Duzib268G1020' => 'dzi', 'Duzib268G1359' => 'dzi', 'ECA232G3929' => 'eca', 'ECA236G2210' => 'eca', 'ECA236G2287' => 'eca', 'ECA240G4568' => 'eca', 'ECA247G0894' => 'eca', 'EL10Ac1g00200' => 'bvu', 'EL10Ac1g00886' => 'bvu', 'EL10As1g23091' => 'bvu', 'EL10As1g23092' => 'bvu', 'Eucgr.A01284' => 'egr', 'Eucgr.A01285' => 'egr', 'Eucgr.D02456' => 'egr', 'Eucgr.E00018' => 'egr', 'Eucgr.E01439' => 'egr', 'Eucgr.G02859' => 'egr', 'FAN01G0168' => 'fan', 'FAN01G0453' => 'fan', 'FAN01G2761' => 'fan', 'FAN02G1239' => 'fan', 'FAN03G0645' => 'fan', 'FAN03G2707' => 'fan', 'FAN03G2978' => 'fan', 'FAN04G0227' => 'fan', 'FAN06G0091' => 'fan', 'FAN06G1418' => 'fan', 'FAN06G1512' => 'fan', 'FAN06G1986' => 'fan', 'FAN06G2905' => 'fan', 'FAN06G4325' => 'fan', 'FAN08G0033' => 'fan', 'FAN09G0642' => 'fan', 'FAN10G1763' => 'fan', 'FAN10G2026' => 'fan', 'FAN10G2513' => 'fan', 'FAN10G3402' => 'fan', 'FAN10G3564' => 'fan', 'FAN10G3987' => 'fan', 'FAN13G1490' => 'fan', 'FAN14G5857' => 'fan', 'FAN18G1188' => 'fan', 'FvH4_5g00750' => 'fve', 'FvH4_6g13410' => 'fve', 'FvH4_7g11740' => 'fve', 'FvH4_7g17410' => 'fve', 'FvH4_7g18860' => 'fve', 'Glyma.01G099100' => 'gma', 'Glyma.01G142300' => 'gma', 'Glyma.03G025500' => 'gma', 'Glyma.03G069700' => 'gma', 'Glyma.03G260000' => 'gma', 'Glyma.09G269800' => 'gma', 'Glyma.10G208700' => 'gma', 'Glyma.18G220400' => 'gma', 'Glyma.20G182000' => 'gma', 'Gohir.A01G221726' => 'ghi', 'Gohir.A07G134600' => 'ghi', 'Gohir.A07G146000' => 'ghi', 'Gohir.A08G173900' => 'ghi', 'Gohir.A09G194900' => 'ghi', 'Gohir.A10G204100' => 'ghi', 'Gohir.A11G080600' => 'ghi', 'Gohir.A11G327500' => 'ghi', 'Gohir.A12G101800' => 'ghi', 'Gohir.D01G211200' => 'ghi', 'Gohir.D07G139200' => 'ghi', 'Gohir.D07G152100' => 'ghi', 'Gohir.D08G192600' => 'ghi', 'Gohir.D09G189200' => 'ghi', 'Gohir.D10G212000' => 'ghi', 'Gohir.D11G085200' => 'ghi', 'Gohir.D11G346400' => 'ghi', 'Gohir.D12G104800' => 'ghi', 'Gorai.001G151300' => 'gra', 'Gorai.001G174100' => 'gra', 'Gorai.002G257000' => 'gra', 'Gorai.004G202600' => 'gra', 'Gorai.007G090900' => 'gra', 'Gorai.007G376700' => 'gra', 'Gorai.008G114100' => 'gra', 'Gorai.011G237900' => 'gra', 'GSVIVG01005450001' => 'vvi', 'GSVIVG01016232001' => 'vvi', 'GSVIVG01026157001' => 'vvi', 'GSVIVG01027419001' => 'vvi', 'GSVIVG01027631001' => 'vvi', 'GSVIVG01034143001' => 'vvi', 'HanXRQChr03g0093921' => 'han', 'HanXRQChr04g0120001' => 'han', 'HanXRQChr04g0122561' => 'han', 'HanXRQChr09g0246851' => 'han', 'HanXRQChr10g0293311' => 'han', 'HanXRQChr13g0425231' => 'han', 'HanXRQChr16g0532571' => 'han', 'Haze_09050' => 'cav', 'Haze_15715' => 'cav', 'Haze_15716' => 'cav', 'Haze_16803' => 'cav', 'Haze_16850' => 'cav', 'Hma1.2p1_0301F.1_g118655' => 'hma', 'Hma1.2p1_0309F.1_g120590' => 'hma', 'Hma1.2p1_0936F.1_g238900' => 'hma', 'Hma1.2p1_3552F.1_g336740' => 'hma', 'HPP92_003520' => 'vpl', 'HPP92_006628' => 'vpl', 'HPP92_006645' => 'vpl', 'HPP92_014669' => 'vpl', 'HPP92_015077' => 'vpl', 'Hund16742' => 'sun', 'Hund17022' => 'sun', 'Lalb_Chr02g0152131' => 'lal', 'Lalb_Chr05g0225371' => 'lal', 'Lalb_Chr07g0189841' => 'lal', 'Lalb_Chr07g0192961' => 'lal', 'Lalb_Chr12g0208221' => 'lal', 'Lalb_Chr13g0291211' => 'lal', 'Lalb_Chr13g0291781' => 'lal', 'Lalb_Chr18g0044651' => 'lal', 'Lalb_Chr21g0313731' => 'lal', 'Lj1g0022533' => 'lja', 'Lj2A18T50' => 'lonja', 'Lj2A92G93' => 'lonja', 'Lj3A965T73' => 'lonja', 'Lj3g0000673' => 'lja', 'Lj3g0002666' => 'lja', 'Lj4g0016985' => 'lja', 'Lj5g0003625' => 'lja', 'Lj7A529G36' => 'lonja', 'Lj9A569T49' => 'lonja', 'Lj9A604T63' => 'lonja', 'Lsat_1_v5_gn_3_132060' => 'lsa', 'Lsat_1_v5_gn_4_68941' => 'lsa', 'Lsat_1_v5_gn_5_95580' => 'lsa', 'Lsat_1_v5_gn_7_161' => 'lsa', 'Lsat_1_v5_gn_7_7041' => 'lsa', 'Lsat_1_v5_gn_9_33481' => 'lsa', 'Lsat_1_v5_gn_9_68260' => 'lsa', 'Manes.01G073100' => 'mes', 'Manes.01G266300' => 'mes', 'Manes.02G033300' => 'mes', 'Manes.05G017900' => 'mes', 'Manes.05G046100' => 'mes', 'Manes.08G080900' => 'mes', 'Manes.10G049400' => 'mes', 'Mapoly0009s0186' => 'mpo', 'Mapoly0036s0118' => 'mpo', 'Mapoly0101s0046' => 'mpo', 'MBI04_g30218_MAGBIO' => 'mbi', 'MBI04_g35564_MAGBIO' => 'mbi', 'MBI12_g34011_MAGBIO' => 'mbi', 'MBI14_g04655_MAGBIO' => 'mbi', 'MCO07G653' => 'mco', 'MCO10G173' => 'mco', 'MD01G1087100' => 'mdo', 'MD01G1104200' => 'mdo', 'MD02G1205100' => 'mdo', 'MD04G1079200' => 'mdo', 'MD04G1131400' => 'mdo', 'MD07G1121600' => 'mdo', 'MD07G1157300' => 'mdo', 'MD07G1171000' => 'mdo', 'MD12G1144500' => 'mdo', 'Medtr1g094610' => 'mtr', 'Medtr4g021795' => 'mtr', 'Medtr4g023760' => 'mtr', 'Medtr7g118050' => 'mtr', 'MELO3C005582.2' => 'cme', 'MELO3C005989.2' => 'cme', 'MELO3C006192.2' => 'cme', 'MELO3C009248.2' => 'cme', 'MELO3C019817.2' => 'cme', 'Migut.B01625' => 'egut', 'Migut.B01915' => 'egut', 'Migut.F01721' => 'egut', 'Migut.J00314' => 'egut', 'MSTRG.20742' => 'ama', 'MSTRG.8134' => 'ama', 'Nitab4.5_0000096g0010' => 'nta', 'Nitab4.5_0000202g0030' => 'nta', 'Nitab4.5_0000216g0370' => 'nta', 'Nitab4.5_0000457g0230' => 'nta', 'Nitab4.5_0001702g0170' => 'nta', 'Nitab4.5_0003607g0010' => 'nta', 'Nitab4.5_0004917g0020' => 'nta', 'Nitab4.5_0007059g0010' => 'nta', 'Nitab4.5_0007184g0010' => 'nta', 'Nitab4.5_0007346g0020' => 'nta', 'Nn1g00410' => 'nnu', 'Nn1g01252' => 'nnu', 'Nn2g11168' => 'nnu', 'Nn2g13403' => 'nnu', 'Nn2g13760' => 'nnu', 'Nn4g26380' => 'nnu', 'Oeu000806.2' => 'oeu', 'Oeu005788.1' => 'oeu', 'Oeu006900.3' => 'oeu', 'Oeu007797.1' => 'oeu', 'Oeu011932.1' => 'oeu', 'Oeu022739.1' => 'oeu', 'Oeu037918.1' => 'oeu', 'Oeu055490.2' => 'oeu', 'Os01g0844400' => 'osa', 'Os02g0819100' => 'osa', 'Os03g0804300' => 'osa', 'Os05g0458000' => 'osa', 'Os07g0467800' => 'osa', 'Os12g0602200' => 'osa', 'Peaxi162Scf00013g03444' => 'pax', 'Peaxi162Scf00094g01120' => 'pax', 'Peaxi162Scf00191g01211' => 'pax', 'Peaxi162Scf00238g01110' => 'pax', 'Peaxi162Scf00330g00719' => 'pax', 'Peaxi162Scf00627g00018' => 'pax', 'PGR031G2686' => 'pgr', 'PGR042G0809' => 'pgr', 'PGR142G0193' => 'pgr', 'PGSC0003DMG400011066' => 'stu', 'PGSC0003DMG400012041' => 'stu', 'PGSC0003DMG400013678' => 'stu', 'PGSC0003DMG400023477' => 'stu', 'PGSC0003DMG400025956' => 'stu', 'PGSC0003DMG401019151' => 'stu', 'Phvul.006G116400' => 'pvu', 'Phvul.007G097300' => 'pvu', 'Phvul.010G015000' => 'pvu', 'Phvul.010G083900' => 'pvu', 'Potri.001G117100' => 'ptr', 'Potri.002G147300' => 'ptr', 'Potri.003G115600' => 'ptr', 'Potri.006G087400' => 'ptr', 'Potri.010G226100' => 'ptr', 'Potri.014G069200' => 'ptr', 'Potri.014G104000' => 'ptr', 'Potri.016G100200' => 'ptr', 'Pp3c10_20450' => 'ppa', 'Pp3c1_42400' => 'ppa', 'Pp3c3_24390' => 'ppa', 'Pp3c3_2860' => 'ppa', 'PRCOL_00003193' => 'pco', 'Prupe.2G144500' => 'ppe', 'Prupe.2G195700' => 'ppe', 'Prupe.2G209800' => 'ppe', 'Prupe.5G080000' => 'ppe', 'Prupe.6G257900' => 'ppe', 'Psat3g001160' => 'psa', 'Psat6g181880' => 'psa', 'Psat7g233720' => 'psa', 'PSO063G7587' => 'pso', 'PSO339G2145' => 'pso', 'PSO339G3369' => 'pso', 'PSO478G2747' => 'pso', 'PSO513G0140' => 'pso', 'PSO782G1614' => 'pso', 'PSO782G4889' => 'pso', 'PSO782G5485' => 'pso', 'PSO801G0241' => 'pso', 'QL07p048854' => 'qlo', 'QL08p046745' => 'qlo', 'QL08p052606' => 'qlo', 'QL08p053414' => 'qlo', 'QL08p054868' => 'qlo', 'RcHm_v2.0_Chr1g0350251' => 'rch', 'RcHm_v2.0_Chr1g0360851' => 'rch', 'RcHm_v2.0_Chr1g0362791' => 'rch', 'RcHm_v2.0_Chr3g0466281' => 'rch', 'RcHm_v2.0_Chr7g0201481' => 'rch', 'Rhsim01G0148600' => 'rsi', 'Rhsim05G0194400' => 'rsi', 'Rhsim07G0000700' => 'rsi', 'Rhsim07G0000800' => 'rsi', 'Rhsim07G0027900' => 'rsi', 'Rhsim09G0149500' => 'rsi', 'RhsimUnG0186900' => 'rsi', 'Sabra01G0089900' => 'sbr', 'Sabra02G0114700' => 'sbr', 'Sabra02G0116300' => 'sbr', 'Sabra03G0080100' => 'sbr', 'Sabra08G0024300' => 'sbr', 'Sabra10G0174300' => 'sbr', 'Sabra14G0048900' => 'sbr', 'Sabra14G0076500' => 'sbr', 'SalBow5G2513' => 'sbo', 'Sc01g0002300' => 'sci', 'Sc01g0004450' => 'sci', 'Sc06g0001680' => 'sci', 'Sc23g0003580' => 'sci', 'Sed0000913' => 'sed', 'Sed0001655' => 'sed', 'Sed0007745' => 'sed', 'Sed0010951' => 'sed', 'Sed0017599' => 'sed', 'Sed0021405' => 'sed', 'Sed0022810' => 'sed', 'SEGI_07099' => 'sgi', 'SEGI_11931' => 'sgi', 'SEGI_13187' => 'sgi', 'SEGI_29958' => 'sgi', 'SEGI_36351' => 'sgi', 'SGA_v2.0_scaffold126G33770' => 'sas', 'SGA_v2.0_scaffold153G37003' => 'sas', 'SGA_v2.0_scaffold2G01359' => 'sas', 'SGA_v2.0_scaffold5G03064' => 'sas', 'SGA_v2.0_scaffold95G28903' => 'sas', 'SHI12701' => 'shi', 'SHI26410' => 'shi', 'SHI38997' => 'shi', 'SHI53759' => 'shi', 'SHI53886' => 'shi', 'SHI54714' => 'shi', 'SMO011G0041' => 'smo', 'SMO146G0251' => 'smo', 'SMO160G0004' => 'smo', 'SMO174G0057' => 'smo', 'SMO244G0089' => 'smo', 'SMO296G0011' => 'smo', 'Solyc01g091280.3' => 'sly', 'Solyc05g047610.3' => 'sly', 'Solyc05g047640.3' => 'sly', 'Solyc05g055630.3' => 'sly', 'Solyc10g018160.2' => 'sly', 'Solyc10g084820.2' => 'sly', 'Solyc10g086565.2' => 'sly', 'Sopen01g037030' => 'spe', 'Sopen05g027920' => 'spe', 'Sopen05g034070' => 'spe', 'Sopen10g007260' => 'spe', 'Sopen10g034260' => 'spe', 'Sopen10g035950' => 'spe', 'Sp3g07710' => 'spa', 'Sp4g27420' => 'spa', 'Sp5g02450' => 'spa', 'Sp6g01280' => 'spa', 'Sp6g38480' => 'spa', 'Sp7g20780' => 'spa', 'TAR374G1413' => 'tar', 'TAR623G1777' => 'tar', 'TAR629G2370' => 'tar', 'TAR633G1759' => 'tar', 'TAR636G3387' => 'tar', 'THA.LOC104802447' => 'tha', 'THA.LOC104813916' => 'tha', 'THA.LOC104816423' => 'tha', 'THA.LOC104817246' => 'tha', 'THA.LOC104825895' => 'tha', 'Thecc.01G335200' => 'tca', 'Thecc.01G377400' => 'tca', 'Thecc.03G262200' => 'tca', 'Thecc.05G036800' => 'tca', 'Thecc.10G080500' => 'tca', 'Thecc.10G080800' => 'tca', 'Thhalv10001560m.g' => 'esa', 'Thhalv10006120m.g' => 'esa', 'Thhalv10014375m.g' => 'esa', 'Thhalv10021264m.g' => 'esa', 'Thhalv10028856m.g' => 'esa', 'TPR.G1914' => 'tpr', 'TPR.G4757' => 'tpr', 'TPR.G5595' => 'tpr', 'TWI14G0952' => 'twi', 'TWI14G1307' => 'twi', 'TWI38G2143' => 'twi', 'TWI59G0826' => 'twi', 'TWI77G0527' => 'twi', 'TWI81G0150' => 'twi', 'unitig_21.g21018' => 'ugi', 'unitig_26.g9725' => 'ugi', 'unitig_744.g24653' => 'ugi', 'unitig_749.g13778' => 'ugi', 'unitig_899.g15035' => 'ugi', 'vmacro04296' => 'vma', 'vmacro04852' => 'vma', 'vmacro13404' => 'vma', 'vmacro20169' => 'vma', 'vmacro21014' => 'vma', 'VMungo0331G0237' => 'vmu', 'VMungo0331G0706' => 'vmu', 'VMungo0331G1361' => 'vmu', 'VMungo0331G1489' => 'vmu', 'VMungo0540G1037' => 'vmu', 'VMungo0720G2487' => 'vmu', 'VMungo0720G2721' => 'vmu', 'Zm00001eb086860' => 'zma', 'Zm00001eb104760' => 'zma', 'Zm00001eb148220' => 'zma', 'Zm00001eb259030' => 'zma', 'Zm00001eb289590' => 'zma', 'Zm00001eb420150' => 'zma' ) $gf_id = 'HOM05D000968' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000968' ) $data_identifier = 'HOM05D000968' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 19, 'bol' => (int) 9, 'bra' => (int) 12, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 5, 'ccan' => (int) 7, 'cde' => (int) 5, 'cfa' => (int) 8, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 4, 'dca' => (int) 5, 'din' => (int) 5, 'dzi' => (int) 12, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 25, 'fve' => (int) 5, 'gma' => (int) 9, 'ghi' => (int) 18, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 7, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 5, 'sun' => (int) 2, 'lal' => (int) 9, 'lja' => (int) 5, 'lonja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 9, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 2, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 3, 'stu' => (int) 6, 'pvu' => (int) 4, 'ptr' => (int) 8, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 3, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 1, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 5, 'sas' => (int) 5, 'shi' => (int) 6, 'smo' => (int) 6, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 3, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420150' $species_info = array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ) $local_species = 'sun' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000968', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p31690' => 'bna', 'A03p36040' => 'bna', 'A03p53730' => 'bna', 'A04p01410' => 'bna', 'A05p05420' => 'bna', 'A05p39630' => 'bna', 'A05p39640' => 'bna', 'A09p00970' => 'bna', 'A09p53060' => 'bna', 'A10p31890' => 'bna', 'Aa31LG10G15040' => 'aar', 'Aa31LG1G21090' => 'aar', 'Aa31LG1G26900' => 'aar', 'Aa31LG3G1820' => 'aar', 'Aa31LG5G1100' => 'aar', 'Aa31LG6G4740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2265' => 'aag', 'Actinidia07998' => 'ach', 'Actinidia11266' => 'ach', 'Actinidia12682' => 'ach', 'Actinidia26479' => 'ach', 'Actinidia31406' => 'ach', 'Actinidia32437' => 'ach', 'Actinidia38862' => 'ach', 'Ah.05g174230' => 'amhyb', 'Ah.05g179070' => 'amhyb', 'Ah.05g179090' => 'amhyb', 'Ah.12g059950' => 'amhyb', 'AL3G20480' => 'aly', 'AL4G44520' => 'aly', 'AL5G43110' => 'aly', 'AL6G13890' => 'aly', 'AL6G52620' => 'aly', 'AL7G30830' => 'aly', 'Aqoxy1G00899' => 'aox', 'Aqoxy5G04333' => 'aox', 'Aqoxy7G00641' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3IZ0NN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4EF6AW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W9P8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79GA3M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C43NQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFCU6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G95YVJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCHK29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LU1UG8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX91RN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGB4B1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8DA0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9H7JI' => 'arhy', 'AT3G09320' => 'ath', 'AT3G60800' => 'ath', 'AT4G00840' => 'ath', 'AT4G22750' => 'ath', 'AT5G04270' => 'ath', 'ATR0090G003' => 'atr', 'ATR0559G349' => 'atr', 'ATR0680G261' => 'atr', 'ATR0810G048' => 'atr', 'Atru.chr12.831' => 'acertr', 'Atru.chr5.303' => 'acertr', 'Atru.chr5.748' => 'acertr', 'Atru.chr8.1999' => 'acertr', 'Atru.chr9.1436' => 'acertr', 'AUR62004211' => 'cqu', 'AUR62004548' => 'cqu', 'AUR62013637' => 'cqu', 'AUR62022662' => 'cqu', 'AUR62025777' => 'cqu', 'AUR62042386' => 'cqu', 'BcaB01g02310' => 'bca', 'BcaB01g06062' => 'bca', 'BcaB02g08975' => 'bca', 'BcaB02g08980' => 'bca', 'BcaC01g04228' => 'bca', 'BcaC01g06830' => 'bca', 'BcaC02g10186' => 'bca', 'BcaC02g12214' => 'bca', 'BcaC04g24101' => 'bca', 'BcaC05g29520' => 'bca', 'BcaC05g29661' => 'bca', 'BcaC06g32130' => 'bca', 'BcaC06g32131' => 'bca', 'BcaC07g40601' => 'bca', 'BcaC07g42641' => 'bca', 'BcaNung01038' => 'bca', 'BcaNung01676' => 'bca', 'BcaNung02480' => 'bca', 'BcaNung07376' => 'bca', 'BolC3t16146H' => 'bol', 'BolC3t16637H' => 'bol', 'BolC4t22257H' => 'bol', 'BolC4t24728H' => 'bol', 'BolC5t34517H' => 'bol', 'BolC7t45703H' => 'bol', 'BolC8t51166H' => 'bol', 'BolC9t53038H' => 'bol', 'BolC9t60000H' => 'bol', 'BraA01t01345Z' => 'bra', 'BraA01t01346Z' => 'bra', 'BraA01t01348Z' => 'bra', 'BraA03t12347Z' => 'bra', 'BraA03t12775Z' => 'bra', 'BraA03t14439Z' => 'bra', 'BraA04t15860Z' => 'bra', 'BraA05t19511Z' => 'bra', 'BraA05t22746Z' => 'bra', 'BraA09t35767Z' => 'bra', 'BraA09t40732Z' => 'bra', 'BraA10t45233Z' => 'bra', 'C03p38720' => 'bna', 'C03p43680' => 'bna', 'C04p06350' => 'bna', 'C04p31800' => 'bna', 'C05p58680' => 'bna', 'C07p52110' => 'bna', 'C08p35760' => 'bna', 'C09p01050' => 'bna', 'C09p72600' => 'bna', 'CAN.G106.2' => 'can', 'CAN.G1482.1' => 'can', 'CAN.G324.12' => 'can', 'CAN.G388.20' => 'can', 'CAN.G412.7' => 'can', 'CAN.G694.32' => 'can', 'CAN.G92.12' => 'can', 'CANSAT11G2353' => 'cansat', 'CANSAT21G1398' => 'cansat', 'CANSAT56G2456' => 'cansat', 'CANSAT56G3031' => 'cansat', 'CANSAT56G4539' => 'cansat', 'CARHR083680' => 'chi', 'CARHR171190' => 'chi', 'CARHR209010' => 'chi', 'CARHR229680' => 'chi', 'CARHR249490' => 'chi', 'Carub.0003s0844' => 'cru', 'Carub.0005s2755' => 'cru', 'Carub.0006s0322' => 'cru', 'Carub.0006s3586' => 'cru', 'Carub.0007s1855' => 'cru', 'Ca_07808_v3' => 'car', 'Ca_09535_v3' => 'car', 'Ca_10548_v3' => 'car', 'Ca_19913_v3' => 'car', 'Ca_19916_v3' => 'car', 'Ca_19975_v3' => 'car', 'CBR_g22876' => 'cbr', 'CBR_g22879' => 'cbr', 'CBR_g38491' => 'cbr', 'CBR_g54185' => 'cbr', 'CBR_g54190' => 'cbr', 'Cc02_g11020' => 'ccan', 'Cc02_g23920' => 'ccan', 'Cc02_g39860' => 'ccan', 'Cc02_g39870' => 'ccan', 'Cc03_g06760' => 'ccan', 'Cc06_g02450' => 'ccan', 'Cc09_g09450' => 'ccan', 'CDE02G1959' => 'cde', 'CDE04G0600' => 'cde', 'CDE07G1996' => 'cde', 'CDE07G2078' => 'cde', 'CDE11G0611' => 'cde', 'Cfa001683' => 'cfa', 'Cfa001734' => 'cfa', 'Cfa001737' => 'cfa', 'Cfa003751' => 'cfa', 'Cfa012019' => 'cfa', 'Cfa017353' => 'cfa', 'Cfa017732' => 'cfa', 'Cfa022464' => 'cfa', 'Ciclev10012400m.g' => 'ccl', 'Ciclev10021242m.g' => 'ccl', 'Ciclev10021302m.g' => 'ccl', 'Ciclev10021463m.g' => 'ccl', 'Ciclev10032359m.g' => 'ccl', 'CiPaw.01G081000' => 'cil', 'CiPaw.01G262500' => 'cil', 'CiPaw.01G269800' => 'cil', 'CiPaw.02G168400' => 'cil', 'CiPaw.05G119500' => 'cil', 'CiPaw.11G147300' => 'cil', 'ClCG01G003630' => 'cla', 'ClCG05G000510' => 'cla', 'ClCG05G002300' => 'cla', 'ClCG08G007650' => 'cla', 'ClCG10G021250' => 'cla', 'COL.COLO4_06218' => 'col', 'COL.COLO4_12538' => 'col', 'COL.COLO4_14775' => 'col', 'COL.COLO4_23875' => 'col', 'Cpa.g.sc141.16' => 'cpa', 'Cpa.g.sc169.16' => 'cpa', 'Cpa.g.sc244.4' => 'cpa', 'Cpa.g.sc244.5' => 'cpa', 'Cpa.g.sc29.87' => 'cpa', 'Cpa.g.sc53.115' => 'cpa', 'Cre03.g207502' => 'cre', 'Cre06.g277000' => 'cre', 'Cre09.g394050' => 'cre', 'CsaV3_3G007680' => 'csa', 'CsaV3_3G009710' => 'csa', 'CsaV3_3G034790' => 'csa', 'CsaV3_5G003750' => 'csa', 'CsaV3_6G036620' => 'csa', 'CSS0002288' => 'camsi', 'CSS0011250' => 'camsi', 'CSS0021619' => 'camsi', 'CSS0046701' => 'camsi', 'DCAR_006420' => 'dca', 'DCAR_006865' => 'dca', 'DCAR_008558' => 'dca', 'DCAR_028754' => 'dca', 'DCAR_028755' => 'dca', 'Dinv31218' => 'din', 'Dinv32371' => 'din', 'Dinv34250' => 'din', 'Dinv37156' => 'din', 'Dinv43704' => 'din', 'Duzib093G1811' => 'dzi', 'Duzib106G1622' => 'dzi', 'Duzib114G0504' => 'dzi', 'Duzib128G0338' => 'dzi', 'Duzib128G1577' => 'dzi', 'Duzib133G0104' => 'dzi', 'Duzib133G1080' => 'dzi', 'Duzib138G0324' => 'dzi', 'Duzib138G0394' => 'dzi', 'Duzib205G0122' => 'dzi', 'Duzib268G1020' => 'dzi', 'Duzib268G1359' => 'dzi', 'ECA232G3929' => 'eca', 'ECA236G2210' => 'eca', 'ECA236G2287' => 'eca', 'ECA240G4568' => 'eca', 'ECA247G0894' => 'eca', 'EL10Ac1g00200' => 'bvu', 'EL10Ac1g00886' => 'bvu', 'EL10As1g23091' => 'bvu', 'EL10As1g23092' => 'bvu', 'Eucgr.A01284' => 'egr', 'Eucgr.A01285' => 'egr', 'Eucgr.D02456' => 'egr', 'Eucgr.E00018' => 'egr', 'Eucgr.E01439' => 'egr', 'Eucgr.G02859' => 'egr', 'FAN01G0168' => 'fan', 'FAN01G0453' => 'fan', 'FAN01G2761' => 'fan', 'FAN02G1239' => 'fan', 'FAN03G0645' => 'fan', 'FAN03G2707' => 'fan', 'FAN03G2978' => 'fan', 'FAN04G0227' => 'fan', 'FAN06G0091' => 'fan', 'FAN06G1418' => 'fan', 'FAN06G1512' => 'fan', 'FAN06G1986' => 'fan', 'FAN06G2905' => 'fan', 'FAN06G4325' => 'fan', 'FAN08G0033' => 'fan', 'FAN09G0642' => 'fan', 'FAN10G1763' => 'fan', 'FAN10G2026' => 'fan', 'FAN10G2513' => 'fan', 'FAN10G3402' => 'fan', 'FAN10G3564' => 'fan', 'FAN10G3987' => 'fan', 'FAN13G1490' => 'fan', 'FAN14G5857' => 'fan', 'FAN18G1188' => 'fan', 'FvH4_5g00750' => 'fve', 'FvH4_6g13410' => 'fve', 'FvH4_7g11740' => 'fve', 'FvH4_7g17410' => 'fve', 'FvH4_7g18860' => 'fve', 'Glyma.01G099100' => 'gma', 'Glyma.01G142300' => 'gma', 'Glyma.03G025500' => 'gma', 'Glyma.03G069700' => 'gma', 'Glyma.03G260000' => 'gma', 'Glyma.09G269800' => 'gma', 'Glyma.10G208700' => 'gma', 'Glyma.18G220400' => 'gma', 'Glyma.20G182000' => 'gma', 'Gohir.A01G221726' => 'ghi', 'Gohir.A07G134600' => 'ghi', 'Gohir.A07G146000' => 'ghi', 'Gohir.A08G173900' => 'ghi', 'Gohir.A09G194900' => 'ghi', 'Gohir.A10G204100' => 'ghi', 'Gohir.A11G080600' => 'ghi', 'Gohir.A11G327500' => 'ghi', 'Gohir.A12G101800' => 'ghi', 'Gohir.D01G211200' => 'ghi', 'Gohir.D07G139200' => 'ghi', 'Gohir.D07G152100' => 'ghi', 'Gohir.D08G192600' => 'ghi', 'Gohir.D09G189200' => 'ghi', 'Gohir.D10G212000' => 'ghi', 'Gohir.D11G085200' => 'ghi', 'Gohir.D11G346400' => 'ghi', 'Gohir.D12G104800' => 'ghi', 'Gorai.001G151300' => 'gra', 'Gorai.001G174100' => 'gra', 'Gorai.002G257000' => 'gra', 'Gorai.004G202600' => 'gra', 'Gorai.007G090900' => 'gra', 'Gorai.007G376700' => 'gra', 'Gorai.008G114100' => 'gra', 'Gorai.011G237900' => 'gra', 'GSVIVG01005450001' => 'vvi', 'GSVIVG01016232001' => 'vvi', 'GSVIVG01026157001' => 'vvi', 'GSVIVG01027419001' => 'vvi', 'GSVIVG01027631001' => 'vvi', 'GSVIVG01034143001' => 'vvi', 'HanXRQChr03g0093921' => 'han', 'HanXRQChr04g0120001' => 'han', 'HanXRQChr04g0122561' => 'han', 'HanXRQChr09g0246851' => 'han', 'HanXRQChr10g0293311' => 'han', 'HanXRQChr13g0425231' => 'han', 'HanXRQChr16g0532571' => 'han', 'Haze_09050' => 'cav', 'Haze_15715' => 'cav', 'Haze_15716' => 'cav', 'Haze_16803' => 'cav', 'Haze_16850' => 'cav', 'Hma1.2p1_0301F.1_g118655' => 'hma', 'Hma1.2p1_0309F.1_g120590' => 'hma', 'Hma1.2p1_0936F.1_g238900' => 'hma', 'Hma1.2p1_3552F.1_g336740' => 'hma', 'HPP92_003520' => 'vpl', 'HPP92_006628' => 'vpl', 'HPP92_006645' => 'vpl', 'HPP92_014669' => 'vpl', 'HPP92_015077' => 'vpl', 'Hund16742' => 'sun', 'Hund17022' => 'sun', 'Lalb_Chr02g0152131' => 'lal', 'Lalb_Chr05g0225371' => 'lal', 'Lalb_Chr07g0189841' => 'lal', 'Lalb_Chr07g0192961' => 'lal', 'Lalb_Chr12g0208221' => 'lal', 'Lalb_Chr13g0291211' => 'lal', 'Lalb_Chr13g0291781' => 'lal', 'Lalb_Chr18g0044651' => 'lal', 'Lalb_Chr21g0313731' => 'lal', 'Lj1g0022533' => 'lja', 'Lj2A18T50' => 'lonja', 'Lj2A92G93' => 'lonja', 'Lj3A965T73' => 'lonja', 'Lj3g0000673' => 'lja', 'Lj3g0002666' => 'lja', 'Lj4g0016985' => 'lja', 'Lj5g0003625' => 'lja', 'Lj7A529G36' => 'lonja', 'Lj9A569T49' => 'lonja', 'Lj9A604T63' => 'lonja', 'Lsat_1_v5_gn_3_132060' => 'lsa', 'Lsat_1_v5_gn_4_68941' => 'lsa', 'Lsat_1_v5_gn_5_95580' => 'lsa', 'Lsat_1_v5_gn_7_161' => 'lsa', 'Lsat_1_v5_gn_7_7041' => 'lsa', 'Lsat_1_v5_gn_9_33481' => 'lsa', 'Lsat_1_v5_gn_9_68260' => 'lsa', 'Manes.01G073100' => 'mes', 'Manes.01G266300' => 'mes', 'Manes.02G033300' => 'mes', 'Manes.05G017900' => 'mes', 'Manes.05G046100' => 'mes', 'Manes.08G080900' => 'mes', 'Manes.10G049400' => 'mes', 'Mapoly0009s0186' => 'mpo', 'Mapoly0036s0118' => 'mpo', 'Mapoly0101s0046' => 'mpo', 'MBI04_g30218_MAGBIO' => 'mbi', 'MBI04_g35564_MAGBIO' => 'mbi', 'MBI12_g34011_MAGBIO' => 'mbi', 'MBI14_g04655_MAGBIO' => 'mbi', 'MCO07G653' => 'mco', 'MCO10G173' => 'mco', 'MD01G1087100' => 'mdo', 'MD01G1104200' => 'mdo', 'MD02G1205100' => 'mdo', 'MD04G1079200' => 'mdo', 'MD04G1131400' => 'mdo', 'MD07G1121600' => 'mdo', 'MD07G1157300' => 'mdo', 'MD07G1171000' => 'mdo', 'MD12G1144500' => 'mdo', 'Medtr1g094610' => 'mtr', 'Medtr4g021795' => 'mtr', 'Medtr4g023760' => 'mtr', 'Medtr7g118050' => 'mtr', 'MELO3C005582.2' => 'cme', 'MELO3C005989.2' => 'cme', 'MELO3C006192.2' => 'cme', 'MELO3C009248.2' => 'cme', 'MELO3C019817.2' => 'cme', 'Migut.B01625' => 'egut', 'Migut.B01915' => 'egut', 'Migut.F01721' => 'egut', 'Migut.J00314' => 'egut', 'MSTRG.20742' => 'ama', 'MSTRG.8134' => 'ama', 'Nitab4.5_0000096g0010' => 'nta', 'Nitab4.5_0000202g0030' => 'nta', 'Nitab4.5_0000216g0370' => 'nta', 'Nitab4.5_0000457g0230' => 'nta', 'Nitab4.5_0001702g0170' => 'nta', 'Nitab4.5_0003607g0010' => 'nta', 'Nitab4.5_0004917g0020' => 'nta', 'Nitab4.5_0007059g0010' => 'nta', 'Nitab4.5_0007184g0010' => 'nta', 'Nitab4.5_0007346g0020' => 'nta', 'Nn1g00410' => 'nnu', 'Nn1g01252' => 'nnu', 'Nn2g11168' => 'nnu', 'Nn2g13403' => 'nnu', 'Nn2g13760' => 'nnu', 'Nn4g26380' => 'nnu', 'Oeu000806.2' => 'oeu', 'Oeu005788.1' => 'oeu', 'Oeu006900.3' => 'oeu', 'Oeu007797.1' => 'oeu', 'Oeu011932.1' => 'oeu', 'Oeu022739.1' => 'oeu', 'Oeu037918.1' => 'oeu', 'Oeu055490.2' => 'oeu', 'Os01g0844400' => 'osa', 'Os02g0819100' => 'osa', 'Os03g0804300' => 'osa', 'Os05g0458000' => 'osa', 'Os07g0467800' => 'osa', 'Os12g0602200' => 'osa', 'Peaxi162Scf00013g03444' => 'pax', 'Peaxi162Scf00094g01120' => 'pax', 'Peaxi162Scf00191g01211' => 'pax', 'Peaxi162Scf00238g01110' => 'pax', 'Peaxi162Scf00330g00719' => 'pax', 'Peaxi162Scf00627g00018' => 'pax', 'PGR031G2686' => 'pgr', 'PGR042G0809' => 'pgr', 'PGR142G0193' => 'pgr', 'PGSC0003DMG400011066' => 'stu', 'PGSC0003DMG400012041' => 'stu', 'PGSC0003DMG400013678' => 'stu', 'PGSC0003DMG400023477' => 'stu', 'PGSC0003DMG400025956' => 'stu', 'PGSC0003DMG401019151' => 'stu', 'Phvul.006G116400' => 'pvu', 'Phvul.007G097300' => 'pvu', 'Phvul.010G015000' => 'pvu', 'Phvul.010G083900' => 'pvu', 'Potri.001G117100' => 'ptr', 'Potri.002G147300' => 'ptr', 'Potri.003G115600' => 'ptr', 'Potri.006G087400' => 'ptr', 'Potri.010G226100' => 'ptr', 'Potri.014G069200' => 'ptr', 'Potri.014G104000' => 'ptr', 'Potri.016G100200' => 'ptr', 'Pp3c10_20450' => 'ppa', 'Pp3c1_42400' => 'ppa', 'Pp3c3_24390' => 'ppa', 'Pp3c3_2860' => 'ppa', 'PRCOL_00003193' => 'pco', 'Prupe.2G144500' => 'ppe', 'Prupe.2G195700' => 'ppe', 'Prupe.2G209800' => 'ppe', 'Prupe.5G080000' => 'ppe', 'Prupe.6G257900' => 'ppe', 'Psat3g001160' => 'psa', 'Psat6g181880' => 'psa', 'Psat7g233720' => 'psa', 'PSO063G7587' => 'pso', 'PSO339G2145' => 'pso', 'PSO339G3369' => 'pso', 'PSO478G2747' => 'pso', 'PSO513G0140' => 'pso', 'PSO782G1614' => 'pso', 'PSO782G4889' => 'pso', 'PSO782G5485' => 'pso', 'PSO801G0241' => 'pso', 'QL07p048854' => 'qlo', 'QL08p046745' => 'qlo', 'QL08p052606' => 'qlo', 'QL08p053414' => 'qlo', 'QL08p054868' => 'qlo', 'RcHm_v2.0_Chr1g0350251' => 'rch', 'RcHm_v2.0_Chr1g0360851' => 'rch', 'RcHm_v2.0_Chr1g0362791' => 'rch', 'RcHm_v2.0_Chr3g0466281' => 'rch', 'RcHm_v2.0_Chr7g0201481' => 'rch', 'Rhsim01G0148600' => 'rsi', 'Rhsim05G0194400' => 'rsi', 'Rhsim07G0000700' => 'rsi', 'Rhsim07G0000800' => 'rsi', 'Rhsim07G0027900' => 'rsi', 'Rhsim09G0149500' => 'rsi', 'RhsimUnG0186900' => 'rsi', 'Sabra01G0089900' => 'sbr', 'Sabra02G0114700' => 'sbr', 'Sabra02G0116300' => 'sbr', 'Sabra03G0080100' => 'sbr', 'Sabra08G0024300' => 'sbr', 'Sabra10G0174300' => 'sbr', 'Sabra14G0048900' => 'sbr', 'Sabra14G0076500' => 'sbr', 'SalBow5G2513' => 'sbo', 'Sc01g0002300' => 'sci', 'Sc01g0004450' => 'sci', 'Sc06g0001680' => 'sci', 'Sc23g0003580' => 'sci', 'Sed0000913' => 'sed', 'Sed0001655' => 'sed', 'Sed0007745' => 'sed', 'Sed0010951' => 'sed', 'Sed0017599' => 'sed', 'Sed0021405' => 'sed', 'Sed0022810' => 'sed', 'SEGI_07099' => 'sgi', 'SEGI_11931' => 'sgi', 'SEGI_13187' => 'sgi', 'SEGI_29958' => 'sgi', 'SEGI_36351' => 'sgi', 'SGA_v2.0_scaffold126G33770' => 'sas', 'SGA_v2.0_scaffold153G37003' => 'sas', 'SGA_v2.0_scaffold2G01359' => 'sas', 'SGA_v2.0_scaffold5G03064' => 'sas', 'SGA_v2.0_scaffold95G28903' => 'sas', 'SHI12701' => 'shi', 'SHI26410' => 'shi', 'SHI38997' => 'shi', 'SHI53759' => 'shi', 'SHI53886' => 'shi', 'SHI54714' => 'shi', 'SMO011G0041' => 'smo', 'SMO146G0251' => 'smo', 'SMO160G0004' => 'smo', 'SMO174G0057' => 'smo', 'SMO244G0089' => 'smo', 'SMO296G0011' => 'smo', 'Solyc01g091280.3' => 'sly', 'Solyc05g047610.3' => 'sly', 'Solyc05g047640.3' => 'sly', 'Solyc05g055630.3' => 'sly', 'Solyc10g018160.2' => 'sly', 'Solyc10g084820.2' => 'sly', 'Solyc10g086565.2' => 'sly', 'Sopen01g037030' => 'spe', 'Sopen05g027920' => 'spe', 'Sopen05g034070' => 'spe', 'Sopen10g007260' => 'spe', 'Sopen10g034260' => 'spe', 'Sopen10g035950' => 'spe', 'Sp3g07710' => 'spa', 'Sp4g27420' => 'spa', 'Sp5g02450' => 'spa', 'Sp6g01280' => 'spa', 'Sp6g38480' => 'spa', 'Sp7g20780' => 'spa', 'TAR374G1413' => 'tar', 'TAR623G1777' => 'tar', 'TAR629G2370' => 'tar', 'TAR633G1759' => 'tar', 'TAR636G3387' => 'tar', 'THA.LOC104802447' => 'tha', 'THA.LOC104813916' => 'tha', 'THA.LOC104816423' => 'tha', 'THA.LOC104817246' => 'tha', 'THA.LOC104825895' => 'tha', 'Thecc.01G335200' => 'tca', 'Thecc.01G377400' => 'tca', 'Thecc.03G262200' => 'tca', 'Thecc.05G036800' => 'tca', 'Thecc.10G080500' => 'tca', 'Thecc.10G080800' => 'tca', 'Thhalv10001560m.g' => 'esa', 'Thhalv10006120m.g' => 'esa', 'Thhalv10014375m.g' => 'esa', 'Thhalv10021264m.g' => 'esa', 'Thhalv10028856m.g' => 'esa', 'TPR.G1914' => 'tpr', 'TPR.G4757' => 'tpr', 'TPR.G5595' => 'tpr', 'TWI14G0952' => 'twi', 'TWI14G1307' => 'twi', 'TWI38G2143' => 'twi', 'TWI59G0826' => 'twi', 'TWI77G0527' => 'twi', 'TWI81G0150' => 'twi', 'unitig_21.g21018' => 'ugi', 'unitig_26.g9725' => 'ugi', 'unitig_744.g24653' => 'ugi', 'unitig_749.g13778' => 'ugi', 'unitig_899.g15035' => 'ugi', 'vmacro04296' => 'vma', 'vmacro04852' => 'vma', 'vmacro13404' => 'vma', 'vmacro20169' => 'vma', 'vmacro21014' => 'vma', 'VMungo0331G0237' => 'vmu', 'VMungo0331G0706' => 'vmu', 'VMungo0331G1361' => 'vmu', 'VMungo0331G1489' => 'vmu', 'VMungo0540G1037' => 'vmu', 'VMungo0720G2487' => 'vmu', 'VMungo0720G2721' => 'vmu', 'Zm00001eb086860' => 'zma', 'Zm00001eb104760' => 'zma', 'Zm00001eb148220' => 'zma', 'Zm00001eb259030' => 'zma', 'Zm00001eb289590' => 'zma', 'Zm00001eb420150' => 'zma' ), 'gf_id' => 'HOM05D000968', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000968' ), 'data_identifier' => 'HOM05D000968', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000968', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p31690' => 'bna', 'A03p36040' => 'bna', 'A03p53730' => 'bna', 'A04p01410' => 'bna', 'A05p05420' => 'bna', 'A05p39630' => 'bna', 'A05p39640' => 'bna', 'A09p00970' => 'bna', 'A09p53060' => 'bna', 'A10p31890' => 'bna', 'Aa31LG10G15040' => 'aar', 'Aa31LG1G21090' => 'aar', 'Aa31LG1G26900' => 'aar', 'Aa31LG3G1820' => 'aar', 'Aa31LG5G1100' => 'aar', 'Aa31LG6G4740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2265' => 'aag', 'Actinidia07998' => 'ach', 'Actinidia11266' => 'ach', 'Actinidia12682' => 'ach', 'Actinidia26479' => 'ach', 'Actinidia31406' => 'ach', 'Actinidia32437' => 'ach', 'Actinidia38862' => 'ach', 'Ah.05g174230' => 'amhyb', 'Ah.05g179070' => 'amhyb', 'Ah.05g179090' => 'amhyb', 'Ah.12g059950' => 'amhyb', 'AL3G20480' => 'aly', 'AL4G44520' => 'aly', 'AL5G43110' => 'aly', 'AL6G13890' => 'aly', 'AL6G52620' => 'aly', 'AL7G30830' => 'aly', 'Aqoxy1G00899' => 'aox', 'Aqoxy5G04333' => 'aox', 'Aqoxy7G00641' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3IZ0NN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4EF6AW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W9P8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79GA3M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C43NQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFCU6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G95YVJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCHK29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LU1UG8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX91RN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGB4B1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8DA0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9H7JI' => 'arhy', 'AT3G09320' => 'ath', 'AT3G60800' => 'ath', 'AT4G00840' => 'ath', 'AT4G22750' => 'ath', 'AT5G04270' => 'ath', 'ATR0090G003' => 'atr', 'ATR0559G349' => 'atr', 'ATR0680G261' => 'atr', 'ATR0810G048' => 'atr', 'Atru.chr12.831' => 'acertr', 'Atru.chr5.303' => 'acertr', 'Atru.chr5.748' => 'acertr', 'Atru.chr8.1999' => 'acertr', 'Atru.chr9.1436' => 'acertr', 'AUR62004211' => 'cqu', 'AUR62004548' => 'cqu', 'AUR62013637' => 'cqu', 'AUR62022662' => 'cqu', 'AUR62025777' => 'cqu', 'AUR62042386' => 'cqu', 'BcaB01g02310' => 'bca', 'BcaB01g06062' => 'bca', 'BcaB02g08975' => 'bca', 'BcaB02g08980' => 'bca', 'BcaC01g04228' => 'bca', 'BcaC01g06830' => 'bca', 'BcaC02g10186' => 'bca', 'BcaC02g12214' => 'bca', 'BcaC04g24101' => 'bca', 'BcaC05g29520' => 'bca', 'BcaC05g29661' => 'bca', 'BcaC06g32130' => 'bca', 'BcaC06g32131' => 'bca', 'BcaC07g40601' => 'bca', 'BcaC07g42641' => 'bca', 'BcaNung01038' => 'bca', 'BcaNung01676' => 'bca', 'BcaNung02480' => 'bca', 'BcaNung07376' => 'bca', 'BolC3t16146H' => 'bol', 'BolC3t16637H' => 'bol', 'BolC4t22257H' => 'bol', 'BolC4t24728H' => 'bol', 'BolC5t34517H' => 'bol', 'BolC7t45703H' => 'bol', 'BolC8t51166H' => 'bol', 'BolC9t53038H' => 'bol', 'BolC9t60000H' => 'bol', 'BraA01t01345Z' => 'bra', 'BraA01t01346Z' => 'bra', 'BraA01t01348Z' => 'bra', 'BraA03t12347Z' => 'bra', 'BraA03t12775Z' => 'bra', 'BraA03t14439Z' => 'bra', 'BraA04t15860Z' => 'bra', 'BraA05t19511Z' => 'bra', 'BraA05t22746Z' => 'bra', 'BraA09t35767Z' => 'bra', 'BraA09t40732Z' => 'bra', 'BraA10t45233Z' => 'bra', 'C03p38720' => 'bna', 'C03p43680' => 'bna', 'C04p06350' => 'bna', 'C04p31800' => 'bna', 'C05p58680' => 'bna', 'C07p52110' => 'bna', 'C08p35760' => 'bna', 'C09p01050' => 'bna', 'C09p72600' => 'bna', 'CAN.G106.2' => 'can', 'CAN.G1482.1' => 'can', 'CAN.G324.12' => 'can', 'CAN.G388.20' => 'can', 'CAN.G412.7' => 'can', 'CAN.G694.32' => 'can', 'CAN.G92.12' => 'can', 'CANSAT11G2353' => 'cansat', 'CANSAT21G1398' => 'cansat', 'CANSAT56G2456' => 'cansat', 'CANSAT56G3031' => 'cansat', 'CANSAT56G4539' => 'cansat', 'CARHR083680' => 'chi', 'CARHR171190' => 'chi', 'CARHR209010' => 'chi', 'CARHR229680' => 'chi', 'CARHR249490' => 'chi', 'Carub.0003s0844' => 'cru', 'Carub.0005s2755' => 'cru', 'Carub.0006s0322' => 'cru', 'Carub.0006s3586' => 'cru', 'Carub.0007s1855' => 'cru', 'Ca_07808_v3' => 'car', 'Ca_09535_v3' => 'car', 'Ca_10548_v3' => 'car', 'Ca_19913_v3' => 'car', 'Ca_19916_v3' => 'car', 'Ca_19975_v3' => 'car', 'CBR_g22876' => 'cbr', 'CBR_g22879' => 'cbr', 'CBR_g38491' => 'cbr', 'CBR_g54185' => 'cbr', 'CBR_g54190' => 'cbr', 'Cc02_g11020' => 'ccan', 'Cc02_g23920' => 'ccan', 'Cc02_g39860' => 'ccan', 'Cc02_g39870' => 'ccan', 'Cc03_g06760' => 'ccan', 'Cc06_g02450' => 'ccan', 'Cc09_g09450' => 'ccan', 'CDE02G1959' => 'cde', 'CDE04G0600' => 'cde', 'CDE07G1996' => 'cde', 'CDE07G2078' => 'cde', 'CDE11G0611' => 'cde', 'Cfa001683' => 'cfa', 'Cfa001734' => 'cfa', 'Cfa001737' => 'cfa', 'Cfa003751' => 'cfa', 'Cfa012019' => 'cfa', 'Cfa017353' => 'cfa', 'Cfa017732' => 'cfa', 'Cfa022464' => 'cfa', 'Ciclev10012400m.g' => 'ccl', 'Ciclev10021242m.g' => 'ccl', 'Ciclev10021302m.g' => 'ccl', 'Ciclev10021463m.g' => 'ccl', 'Ciclev10032359m.g' => 'ccl', 'CiPaw.01G081000' => 'cil', 'CiPaw.01G262500' => 'cil', 'CiPaw.01G269800' => 'cil', 'CiPaw.02G168400' => 'cil', 'CiPaw.05G119500' => 'cil', 'CiPaw.11G147300' => 'cil', 'ClCG01G003630' => 'cla', 'ClCG05G000510' => 'cla', 'ClCG05G002300' => 'cla', 'ClCG08G007650' => 'cla', 'ClCG10G021250' => 'cla', 'COL.COLO4_06218' => 'col', 'COL.COLO4_12538' => 'col', 'COL.COLO4_14775' => 'col', 'COL.COLO4_23875' => 'col', 'Cpa.g.sc141.16' => 'cpa', 'Cpa.g.sc169.16' => 'cpa', 'Cpa.g.sc244.4' => 'cpa', 'Cpa.g.sc244.5' => 'cpa', 'Cpa.g.sc29.87' => 'cpa', 'Cpa.g.sc53.115' => 'cpa', 'Cre03.g207502' => 'cre', 'Cre06.g277000' => 'cre', 'Cre09.g394050' => 'cre', 'CsaV3_3G007680' => 'csa', 'CsaV3_3G009710' => 'csa', 'CsaV3_3G034790' => 'csa', 'CsaV3_5G003750' => 'csa', 'CsaV3_6G036620' => 'csa', 'CSS0002288' => 'camsi', 'CSS0011250' => 'camsi', 'CSS0021619' => 'camsi', 'CSS0046701' => 'camsi', 'DCAR_006420' => 'dca', 'DCAR_006865' => 'dca', 'DCAR_008558' => 'dca', 'DCAR_028754' => 'dca', 'DCAR_028755' => 'dca', 'Dinv31218' => 'din', 'Dinv32371' => 'din', 'Dinv34250' => 'din', 'Dinv37156' => 'din', 'Dinv43704' => 'din', 'Duzib093G1811' => 'dzi', 'Duzib106G1622' => 'dzi', 'Duzib114G0504' => 'dzi', 'Duzib128G0338' => 'dzi', 'Duzib128G1577' => 'dzi', 'Duzib133G0104' => 'dzi', 'Duzib133G1080' => 'dzi', 'Duzib138G0324' => 'dzi', 'Duzib138G0394' => 'dzi', 'Duzib205G0122' => 'dzi', 'Duzib268G1020' => 'dzi', 'Duzib268G1359' => 'dzi', 'ECA232G3929' => 'eca', 'ECA236G2210' => 'eca', 'ECA236G2287' => 'eca', 'ECA240G4568' => 'eca', 'ECA247G0894' => 'eca', 'EL10Ac1g00200' => 'bvu', 'EL10Ac1g00886' => 'bvu', 'EL10As1g23091' => 'bvu', 'EL10As1g23092' => 'bvu', 'Eucgr.A01284' => 'egr', 'Eucgr.A01285' => 'egr', 'Eucgr.D02456' => 'egr', 'Eucgr.E00018' => 'egr', 'Eucgr.E01439' => 'egr', 'Eucgr.G02859' => 'egr', 'FAN01G0168' => 'fan', 'FAN01G0453' => 'fan', 'FAN01G2761' => 'fan', 'FAN02G1239' => 'fan', 'FAN03G0645' => 'fan', 'FAN03G2707' => 'fan', 'FAN03G2978' => 'fan', 'FAN04G0227' => 'fan', 'FAN06G0091' => 'fan', 'FAN06G1418' => 'fan', 'FAN06G1512' => 'fan', 'FAN06G1986' => 'fan', 'FAN06G2905' => 'fan', 'FAN06G4325' => 'fan', 'FAN08G0033' => 'fan', 'FAN09G0642' => 'fan', 'FAN10G1763' => 'fan', 'FAN10G2026' => 'fan', 'FAN10G2513' => 'fan', 'FAN10G3402' => 'fan', 'FAN10G3564' => 'fan', 'FAN10G3987' => 'fan', 'FAN13G1490' => 'fan', 'FAN14G5857' => 'fan', 'FAN18G1188' => 'fan', 'FvH4_5g00750' => 'fve', 'FvH4_6g13410' => 'fve', 'FvH4_7g11740' => 'fve', 'FvH4_7g17410' => 'fve', 'FvH4_7g18860' => 'fve', 'Glyma.01G099100' => 'gma', 'Glyma.01G142300' => 'gma', 'Glyma.03G025500' => 'gma', 'Glyma.03G069700' => 'gma', 'Glyma.03G260000' => 'gma', 'Glyma.09G269800' => 'gma', 'Glyma.10G208700' => 'gma', 'Glyma.18G220400' => 'gma', 'Glyma.20G182000' => 'gma', 'Gohir.A01G221726' => 'ghi', 'Gohir.A07G134600' => 'ghi', 'Gohir.A07G146000' => 'ghi', 'Gohir.A08G173900' => 'ghi', 'Gohir.A09G194900' => 'ghi', 'Gohir.A10G204100' => 'ghi', 'Gohir.A11G080600' => 'ghi', 'Gohir.A11G327500' => 'ghi', 'Gohir.A12G101800' => 'ghi', 'Gohir.D01G211200' => 'ghi', 'Gohir.D07G139200' => 'ghi', 'Gohir.D07G152100' => 'ghi', 'Gohir.D08G192600' => 'ghi', 'Gohir.D09G189200' => 'ghi', 'Gohir.D10G212000' => 'ghi', 'Gohir.D11G085200' => 'ghi', 'Gohir.D11G346400' => 'ghi', 'Gohir.D12G104800' => 'ghi', 'Gorai.001G151300' => 'gra', 'Gorai.001G174100' => 'gra', 'Gorai.002G257000' => 'gra', 'Gorai.004G202600' => 'gra', 'Gorai.007G090900' => 'gra', 'Gorai.007G376700' => 'gra', 'Gorai.008G114100' => 'gra', 'Gorai.011G237900' => 'gra', 'GSVIVG01005450001' => 'vvi', 'GSVIVG01016232001' => 'vvi', 'GSVIVG01026157001' => 'vvi', 'GSVIVG01027419001' => 'vvi', 'GSVIVG01027631001' => 'vvi', 'GSVIVG01034143001' => 'vvi', 'HanXRQChr03g0093921' => 'han', 'HanXRQChr04g0120001' => 'han', 'HanXRQChr04g0122561' => 'han', 'HanXRQChr09g0246851' => 'han', 'HanXRQChr10g0293311' => 'han', 'HanXRQChr13g0425231' => 'han', 'HanXRQChr16g0532571' => 'han', 'Haze_09050' => 'cav', 'Haze_15715' => 'cav', 'Haze_15716' => 'cav', 'Haze_16803' => 'cav', 'Haze_16850' => 'cav', 'Hma1.2p1_0301F.1_g118655' => 'hma', 'Hma1.2p1_0309F.1_g120590' => 'hma', 'Hma1.2p1_0936F.1_g238900' => 'hma', 'Hma1.2p1_3552F.1_g336740' => 'hma', 'HPP92_003520' => 'vpl', 'HPP92_006628' => 'vpl', 'HPP92_006645' => 'vpl', 'HPP92_014669' => 'vpl', 'HPP92_015077' => 'vpl', 'Hund16742' => 'sun', 'Hund17022' => 'sun', 'Lalb_Chr02g0152131' => 'lal', 'Lalb_Chr05g0225371' => 'lal', 'Lalb_Chr07g0189841' => 'lal', 'Lalb_Chr07g0192961' => 'lal', 'Lalb_Chr12g0208221' => 'lal', 'Lalb_Chr13g0291211' => 'lal', 'Lalb_Chr13g0291781' => 'lal', 'Lalb_Chr18g0044651' => 'lal', 'Lalb_Chr21g0313731' => 'lal', 'Lj1g0022533' => 'lja', 'Lj2A18T50' => 'lonja', 'Lj2A92G93' => 'lonja', 'Lj3A965T73' => 'lonja', 'Lj3g0000673' => 'lja', 'Lj3g0002666' => 'lja', 'Lj4g0016985' => 'lja', 'Lj5g0003625' => 'lja', 'Lj7A529G36' => 'lonja', 'Lj9A569T49' => 'lonja', 'Lj9A604T63' => 'lonja', 'Lsat_1_v5_gn_3_132060' => 'lsa', 'Lsat_1_v5_gn_4_68941' => 'lsa', 'Lsat_1_v5_gn_5_95580' => 'lsa', 'Lsat_1_v5_gn_7_161' => 'lsa', 'Lsat_1_v5_gn_7_7041' => 'lsa', 'Lsat_1_v5_gn_9_33481' => 'lsa', 'Lsat_1_v5_gn_9_68260' => 'lsa', 'Manes.01G073100' => 'mes', 'Manes.01G266300' => 'mes', 'Manes.02G033300' => 'mes', 'Manes.05G017900' => 'mes', 'Manes.05G046100' => 'mes', 'Manes.08G080900' => 'mes', 'Manes.10G049400' => 'mes', 'Mapoly0009s0186' => 'mpo', 'Mapoly0036s0118' => 'mpo', 'Mapoly0101s0046' => 'mpo', 'MBI04_g30218_MAGBIO' => 'mbi', 'MBI04_g35564_MAGBIO' => 'mbi', 'MBI12_g34011_MAGBIO' => 'mbi', 'MBI14_g04655_MAGBIO' => 'mbi', 'MCO07G653' => 'mco', 'MCO10G173' => 'mco', 'MD01G1087100' => 'mdo', 'MD01G1104200' => 'mdo', 'MD02G1205100' => 'mdo', 'MD04G1079200' => 'mdo', 'MD04G1131400' => 'mdo', 'MD07G1121600' => 'mdo', 'MD07G1157300' => 'mdo', 'MD07G1171000' => 'mdo', 'MD12G1144500' => 'mdo', 'Medtr1g094610' => 'mtr', 'Medtr4g021795' => 'mtr', 'Medtr4g023760' => 'mtr', 'Medtr7g118050' => 'mtr', 'MELO3C005582.2' => 'cme', 'MELO3C005989.2' => 'cme', 'MELO3C006192.2' => 'cme', 'MELO3C009248.2' => 'cme', 'MELO3C019817.2' => 'cme', 'Migut.B01625' => 'egut', 'Migut.B01915' => 'egut', 'Migut.F01721' => 'egut', 'Migut.J00314' => 'egut', 'MSTRG.20742' => 'ama', 'MSTRG.8134' => 'ama', 'Nitab4.5_0000096g0010' => 'nta', 'Nitab4.5_0000202g0030' => 'nta', 'Nitab4.5_0000216g0370' => 'nta', 'Nitab4.5_0000457g0230' => 'nta', 'Nitab4.5_0001702g0170' => 'nta', 'Nitab4.5_0003607g0010' => 'nta', 'Nitab4.5_0004917g0020' => 'nta', 'Nitab4.5_0007059g0010' => 'nta', 'Nitab4.5_0007184g0010' => 'nta', 'Nitab4.5_0007346g0020' => 'nta', 'Nn1g00410' => 'nnu', 'Nn1g01252' => 'nnu', 'Nn2g11168' => 'nnu', 'Nn2g13403' => 'nnu', 'Nn2g13760' => 'nnu', 'Nn4g26380' => 'nnu', 'Oeu000806.2' => 'oeu', 'Oeu005788.1' => 'oeu', 'Oeu006900.3' => 'oeu', 'Oeu007797.1' => 'oeu', 'Oeu011932.1' => 'oeu', 'Oeu022739.1' => 'oeu', 'Oeu037918.1' => 'oeu', 'Oeu055490.2' => 'oeu', 'Os01g0844400' => 'osa', 'Os02g0819100' => 'osa', 'Os03g0804300' => 'osa', 'Os05g0458000' => 'osa', 'Os07g0467800' => 'osa', 'Os12g0602200' => 'osa', 'Peaxi162Scf00013g03444' => 'pax', 'Peaxi162Scf00094g01120' => 'pax', 'Peaxi162Scf00191g01211' => 'pax', 'Peaxi162Scf00238g01110' => 'pax', 'Peaxi162Scf00330g00719' => 'pax', 'Peaxi162Scf00627g00018' => 'pax', 'PGR031G2686' => 'pgr', 'PGR042G0809' => 'pgr', 'PGR142G0193' => 'pgr', 'PGSC0003DMG400011066' => 'stu', 'PGSC0003DMG400012041' => 'stu', 'PGSC0003DMG400013678' => 'stu', 'PGSC0003DMG400023477' => 'stu', 'PGSC0003DMG400025956' => 'stu', 'PGSC0003DMG401019151' => 'stu', 'Phvul.006G116400' => 'pvu', 'Phvul.007G097300' => 'pvu', 'Phvul.010G015000' => 'pvu', 'Phvul.010G083900' => 'pvu', 'Potri.001G117100' => 'ptr', 'Potri.002G147300' => 'ptr', 'Potri.003G115600' => 'ptr', 'Potri.006G087400' => 'ptr', 'Potri.010G226100' => 'ptr', 'Potri.014G069200' => 'ptr', 'Potri.014G104000' => 'ptr', 'Potri.016G100200' => 'ptr', 'Pp3c10_20450' => 'ppa', 'Pp3c1_42400' => 'ppa', 'Pp3c3_24390' => 'ppa', 'Pp3c3_2860' => 'ppa', 'PRCOL_00003193' => 'pco', 'Prupe.2G144500' => 'ppe', 'Prupe.2G195700' => 'ppe', 'Prupe.2G209800' => 'ppe', 'Prupe.5G080000' => 'ppe', 'Prupe.6G257900' => 'ppe', 'Psat3g001160' => 'psa', 'Psat6g181880' => 'psa', 'Psat7g233720' => 'psa', 'PSO063G7587' => 'pso', 'PSO339G2145' => 'pso', 'PSO339G3369' => 'pso', 'PSO478G2747' => 'pso', 'PSO513G0140' => 'pso', 'PSO782G1614' => 'pso', 'PSO782G4889' => 'pso', 'PSO782G5485' => 'pso', 'PSO801G0241' => 'pso', 'QL07p048854' => 'qlo', 'QL08p046745' => 'qlo', 'QL08p052606' => 'qlo', 'QL08p053414' => 'qlo', 'QL08p054868' => 'qlo', 'RcHm_v2.0_Chr1g0350251' => 'rch', 'RcHm_v2.0_Chr1g0360851' => 'rch', 'RcHm_v2.0_Chr1g0362791' => 'rch', 'RcHm_v2.0_Chr3g0466281' => 'rch', 'RcHm_v2.0_Chr7g0201481' => 'rch', 'Rhsim01G0148600' => 'rsi', 'Rhsim05G0194400' => 'rsi', 'Rhsim07G0000700' => 'rsi', 'Rhsim07G0000800' => 'rsi', 'Rhsim07G0027900' => 'rsi', 'Rhsim09G0149500' => 'rsi', 'RhsimUnG0186900' => 'rsi', 'Sabra01G0089900' => 'sbr', 'Sabra02G0114700' => 'sbr', 'Sabra02G0116300' => 'sbr', 'Sabra03G0080100' => 'sbr', 'Sabra08G0024300' => 'sbr', 'Sabra10G0174300' => 'sbr', 'Sabra14G0048900' => 'sbr', 'Sabra14G0076500' => 'sbr', 'SalBow5G2513' => 'sbo', 'Sc01g0002300' => 'sci', 'Sc01g0004450' => 'sci', 'Sc06g0001680' => 'sci', 'Sc23g0003580' => 'sci', 'Sed0000913' => 'sed', 'Sed0001655' => 'sed', 'Sed0007745' => 'sed', 'Sed0010951' => 'sed', 'Sed0017599' => 'sed', 'Sed0021405' => 'sed', 'Sed0022810' => 'sed', 'SEGI_07099' => 'sgi', 'SEGI_11931' => 'sgi', 'SEGI_13187' => 'sgi', 'SEGI_29958' => 'sgi', 'SEGI_36351' => 'sgi', 'SGA_v2.0_scaffold126G33770' => 'sas', 'SGA_v2.0_scaffold153G37003' => 'sas', 'SGA_v2.0_scaffold2G01359' => 'sas', 'SGA_v2.0_scaffold5G03064' => 'sas', 'SGA_v2.0_scaffold95G28903' => 'sas', 'SHI12701' => 'shi', 'SHI26410' => 'shi', 'SHI38997' => 'shi', 'SHI53759' => 'shi', 'SHI53886' => 'shi', 'SHI54714' => 'shi', 'SMO011G0041' => 'smo', 'SMO146G0251' => 'smo', 'SMO160G0004' => 'smo', 'SMO174G0057' => 'smo', 'SMO244G0089' => 'smo', 'SMO296G0011' => 'smo', 'Solyc01g091280.3' => 'sly', 'Solyc05g047610.3' => 'sly', 'Solyc05g047640.3' => 'sly', 'Solyc05g055630.3' => 'sly', 'Solyc10g018160.2' => 'sly', 'Solyc10g084820.2' => 'sly', 'Solyc10g086565.2' => 'sly', 'Sopen01g037030' => 'spe', 'Sopen05g027920' => 'spe', 'Sopen05g034070' => 'spe', 'Sopen10g007260' => 'spe', 'Sopen10g034260' => 'spe', 'Sopen10g035950' => 'spe', 'Sp3g07710' => 'spa', 'Sp4g27420' => 'spa', 'Sp5g02450' => 'spa', 'Sp6g01280' => 'spa', 'Sp6g38480' => 'spa', 'Sp7g20780' => 'spa', 'TAR374G1413' => 'tar', 'TAR623G1777' => 'tar', 'TAR629G2370' => 'tar', 'TAR633G1759' => 'tar', 'TAR636G3387' => 'tar', 'THA.LOC104802447' => 'tha', 'THA.LOC104813916' => 'tha', 'THA.LOC104816423' => 'tha', 'THA.LOC104817246' => 'tha', 'THA.LOC104825895' => 'tha', 'Thecc.01G335200' => 'tca', 'Thecc.01G377400' => 'tca', 'Thecc.03G262200' => 'tca', 'Thecc.05G036800' => 'tca', 'Thecc.10G080500' => 'tca', 'Thecc.10G080800' => 'tca', 'Thhalv10001560m.g' => 'esa', 'Thhalv10006120m.g' => 'esa', 'Thhalv10014375m.g' => 'esa', 'Thhalv10021264m.g' => 'esa', 'Thhalv10028856m.g' => 'esa', 'TPR.G1914' => 'tpr', 'TPR.G4757' => 'tpr', 'TPR.G5595' => 'tpr', 'TWI14G0952' => 'twi', 'TWI14G1307' => 'twi', 'TWI38G2143' => 'twi', 'TWI59G0826' => 'twi', 'TWI77G0527' => 'twi', 'TWI81G0150' => 'twi', 'unitig_21.g21018' => 'ugi', 'unitig_26.g9725' => 'ugi', 'unitig_744.g24653' => 'ugi', 'unitig_749.g13778' => 'ugi', 'unitig_899.g15035' => 'ugi', 'vmacro04296' => 'vma', 'vmacro04852' => 'vma', 'vmacro13404' => 'vma', 'vmacro20169' => 'vma', 'vmacro21014' => 'vma', 'VMungo0331G0237' => 'vmu', 'VMungo0331G0706' => 'vmu', 'VMungo0331G1361' => 'vmu', 'VMungo0331G1489' => 'vmu', 'VMungo0540G1037' => 'vmu', 'VMungo0720G2487' => 'vmu', 'VMungo0720G2721' => 'vmu', 'Zm00001eb086860' => 'zma', 'Zm00001eb104760' => 'zma', 'Zm00001eb148220' => 'zma', 'Zm00001eb259030' => 'zma', 'Zm00001eb289590' => 'zma', 'Zm00001eb420150' => 'zma' ) $gf_id = 'HOM05D000968' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000968' ) $data_identifier = 'HOM05D000968' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 19, 'bol' => (int) 9, 'bra' => (int) 12, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 5, 'ccan' => (int) 7, 'cde' => (int) 5, 'cfa' => (int) 8, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 4, 'dca' => (int) 5, 'din' => (int) 5, 'dzi' => (int) 12, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 25, 'fve' => (int) 5, 'gma' => (int) 9, 'ghi' => (int) 18, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 7, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 5, 'sun' => (int) 2, 'lal' => (int) 9, 'lja' => (int) 5, 'lonja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 9, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 2, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 3, 'stu' => (int) 6, 'pvu' => (int) 4, 'ptr' => (int) 8, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 3, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 1, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 5, 'sas' => (int) 5, 'shi' => (int) 6, 'smo' => (int) 6, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 3, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420150' $species_info = array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ) $local_species = 'sgi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000968', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p31690' => 'bna', 'A03p36040' => 'bna', 'A03p53730' => 'bna', 'A04p01410' => 'bna', 'A05p05420' => 'bna', 'A05p39630' => 'bna', 'A05p39640' => 'bna', 'A09p00970' => 'bna', 'A09p53060' => 'bna', 'A10p31890' => 'bna', 'Aa31LG10G15040' => 'aar', 'Aa31LG1G21090' => 'aar', 'Aa31LG1G26900' => 'aar', 'Aa31LG3G1820' => 'aar', 'Aa31LG5G1100' => 'aar', 'Aa31LG6G4740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2265' => 'aag', 'Actinidia07998' => 'ach', 'Actinidia11266' => 'ach', 'Actinidia12682' => 'ach', 'Actinidia26479' => 'ach', 'Actinidia31406' => 'ach', 'Actinidia32437' => 'ach', 'Actinidia38862' => 'ach', 'Ah.05g174230' => 'amhyb', 'Ah.05g179070' => 'amhyb', 'Ah.05g179090' => 'amhyb', 'Ah.12g059950' => 'amhyb', 'AL3G20480' => 'aly', 'AL4G44520' => 'aly', 'AL5G43110' => 'aly', 'AL6G13890' => 'aly', 'AL6G52620' => 'aly', 'AL7G30830' => 'aly', 'Aqoxy1G00899' => 'aox', 'Aqoxy5G04333' => 'aox', 'Aqoxy7G00641' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3IZ0NN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4EF6AW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W9P8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79GA3M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C43NQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFCU6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G95YVJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCHK29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LU1UG8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX91RN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGB4B1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8DA0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9H7JI' => 'arhy', 'AT3G09320' => 'ath', 'AT3G60800' => 'ath', 'AT4G00840' => 'ath', 'AT4G22750' => 'ath', 'AT5G04270' => 'ath', 'ATR0090G003' => 'atr', 'ATR0559G349' => 'atr', 'ATR0680G261' => 'atr', 'ATR0810G048' => 'atr', 'Atru.chr12.831' => 'acertr', 'Atru.chr5.303' => 'acertr', 'Atru.chr5.748' => 'acertr', 'Atru.chr8.1999' => 'acertr', 'Atru.chr9.1436' => 'acertr', 'AUR62004211' => 'cqu', 'AUR62004548' => 'cqu', 'AUR62013637' => 'cqu', 'AUR62022662' => 'cqu', 'AUR62025777' => 'cqu', 'AUR62042386' => 'cqu', 'BcaB01g02310' => 'bca', 'BcaB01g06062' => 'bca', 'BcaB02g08975' => 'bca', 'BcaB02g08980' => 'bca', 'BcaC01g04228' => 'bca', 'BcaC01g06830' => 'bca', 'BcaC02g10186' => 'bca', 'BcaC02g12214' => 'bca', 'BcaC04g24101' => 'bca', 'BcaC05g29520' => 'bca', 'BcaC05g29661' => 'bca', 'BcaC06g32130' => 'bca', 'BcaC06g32131' => 'bca', 'BcaC07g40601' => 'bca', 'BcaC07g42641' => 'bca', 'BcaNung01038' => 'bca', 'BcaNung01676' => 'bca', 'BcaNung02480' => 'bca', 'BcaNung07376' => 'bca', 'BolC3t16146H' => 'bol', 'BolC3t16637H' => 'bol', 'BolC4t22257H' => 'bol', 'BolC4t24728H' => 'bol', 'BolC5t34517H' => 'bol', 'BolC7t45703H' => 'bol', 'BolC8t51166H' => 'bol', 'BolC9t53038H' => 'bol', 'BolC9t60000H' => 'bol', 'BraA01t01345Z' => 'bra', 'BraA01t01346Z' => 'bra', 'BraA01t01348Z' => 'bra', 'BraA03t12347Z' => 'bra', 'BraA03t12775Z' => 'bra', 'BraA03t14439Z' => 'bra', 'BraA04t15860Z' => 'bra', 'BraA05t19511Z' => 'bra', 'BraA05t22746Z' => 'bra', 'BraA09t35767Z' => 'bra', 'BraA09t40732Z' => 'bra', 'BraA10t45233Z' => 'bra', 'C03p38720' => 'bna', 'C03p43680' => 'bna', 'C04p06350' => 'bna', 'C04p31800' => 'bna', 'C05p58680' => 'bna', 'C07p52110' => 'bna', 'C08p35760' => 'bna', 'C09p01050' => 'bna', 'C09p72600' => 'bna', 'CAN.G106.2' => 'can', 'CAN.G1482.1' => 'can', 'CAN.G324.12' => 'can', 'CAN.G388.20' => 'can', 'CAN.G412.7' => 'can', 'CAN.G694.32' => 'can', 'CAN.G92.12' => 'can', 'CANSAT11G2353' => 'cansat', 'CANSAT21G1398' => 'cansat', 'CANSAT56G2456' => 'cansat', 'CANSAT56G3031' => 'cansat', 'CANSAT56G4539' => 'cansat', 'CARHR083680' => 'chi', 'CARHR171190' => 'chi', 'CARHR209010' => 'chi', 'CARHR229680' => 'chi', 'CARHR249490' => 'chi', 'Carub.0003s0844' => 'cru', 'Carub.0005s2755' => 'cru', 'Carub.0006s0322' => 'cru', 'Carub.0006s3586' => 'cru', 'Carub.0007s1855' => 'cru', 'Ca_07808_v3' => 'car', 'Ca_09535_v3' => 'car', 'Ca_10548_v3' => 'car', 'Ca_19913_v3' => 'car', 'Ca_19916_v3' => 'car', 'Ca_19975_v3' => 'car', 'CBR_g22876' => 'cbr', 'CBR_g22879' => 'cbr', 'CBR_g38491' => 'cbr', 'CBR_g54185' => 'cbr', 'CBR_g54190' => 'cbr', 'Cc02_g11020' => 'ccan', 'Cc02_g23920' => 'ccan', 'Cc02_g39860' => 'ccan', 'Cc02_g39870' => 'ccan', 'Cc03_g06760' => 'ccan', 'Cc06_g02450' => 'ccan', 'Cc09_g09450' => 'ccan', 'CDE02G1959' => 'cde', 'CDE04G0600' => 'cde', 'CDE07G1996' => 'cde', 'CDE07G2078' => 'cde', 'CDE11G0611' => 'cde', 'Cfa001683' => 'cfa', 'Cfa001734' => 'cfa', 'Cfa001737' => 'cfa', 'Cfa003751' => 'cfa', 'Cfa012019' => 'cfa', 'Cfa017353' => 'cfa', 'Cfa017732' => 'cfa', 'Cfa022464' => 'cfa', 'Ciclev10012400m.g' => 'ccl', 'Ciclev10021242m.g' => 'ccl', 'Ciclev10021302m.g' => 'ccl', 'Ciclev10021463m.g' => 'ccl', 'Ciclev10032359m.g' => 'ccl', 'CiPaw.01G081000' => 'cil', 'CiPaw.01G262500' => 'cil', 'CiPaw.01G269800' => 'cil', 'CiPaw.02G168400' => 'cil', 'CiPaw.05G119500' => 'cil', 'CiPaw.11G147300' => 'cil', 'ClCG01G003630' => 'cla', 'ClCG05G000510' => 'cla', 'ClCG05G002300' => 'cla', 'ClCG08G007650' => 'cla', 'ClCG10G021250' => 'cla', 'COL.COLO4_06218' => 'col', 'COL.COLO4_12538' => 'col', 'COL.COLO4_14775' => 'col', 'COL.COLO4_23875' => 'col', 'Cpa.g.sc141.16' => 'cpa', 'Cpa.g.sc169.16' => 'cpa', 'Cpa.g.sc244.4' => 'cpa', 'Cpa.g.sc244.5' => 'cpa', 'Cpa.g.sc29.87' => 'cpa', 'Cpa.g.sc53.115' => 'cpa', 'Cre03.g207502' => 'cre', 'Cre06.g277000' => 'cre', 'Cre09.g394050' => 'cre', 'CsaV3_3G007680' => 'csa', 'CsaV3_3G009710' => 'csa', 'CsaV3_3G034790' => 'csa', 'CsaV3_5G003750' => 'csa', 'CsaV3_6G036620' => 'csa', 'CSS0002288' => 'camsi', 'CSS0011250' => 'camsi', 'CSS0021619' => 'camsi', 'CSS0046701' => 'camsi', 'DCAR_006420' => 'dca', 'DCAR_006865' => 'dca', 'DCAR_008558' => 'dca', 'DCAR_028754' => 'dca', 'DCAR_028755' => 'dca', 'Dinv31218' => 'din', 'Dinv32371' => 'din', 'Dinv34250' => 'din', 'Dinv37156' => 'din', 'Dinv43704' => 'din', 'Duzib093G1811' => 'dzi', 'Duzib106G1622' => 'dzi', 'Duzib114G0504' => 'dzi', 'Duzib128G0338' => 'dzi', 'Duzib128G1577' => 'dzi', 'Duzib133G0104' => 'dzi', 'Duzib133G1080' => 'dzi', 'Duzib138G0324' => 'dzi', 'Duzib138G0394' => 'dzi', 'Duzib205G0122' => 'dzi', 'Duzib268G1020' => 'dzi', 'Duzib268G1359' => 'dzi', 'ECA232G3929' => 'eca', 'ECA236G2210' => 'eca', 'ECA236G2287' => 'eca', 'ECA240G4568' => 'eca', 'ECA247G0894' => 'eca', 'EL10Ac1g00200' => 'bvu', 'EL10Ac1g00886' => 'bvu', 'EL10As1g23091' => 'bvu', 'EL10As1g23092' => 'bvu', 'Eucgr.A01284' => 'egr', 'Eucgr.A01285' => 'egr', 'Eucgr.D02456' => 'egr', 'Eucgr.E00018' => 'egr', 'Eucgr.E01439' => 'egr', 'Eucgr.G02859' => 'egr', 'FAN01G0168' => 'fan', 'FAN01G0453' => 'fan', 'FAN01G2761' => 'fan', 'FAN02G1239' => 'fan', 'FAN03G0645' => 'fan', 'FAN03G2707' => 'fan', 'FAN03G2978' => 'fan', 'FAN04G0227' => 'fan', 'FAN06G0091' => 'fan', 'FAN06G1418' => 'fan', 'FAN06G1512' => 'fan', 'FAN06G1986' => 'fan', 'FAN06G2905' => 'fan', 'FAN06G4325' => 'fan', 'FAN08G0033' => 'fan', 'FAN09G0642' => 'fan', 'FAN10G1763' => 'fan', 'FAN10G2026' => 'fan', 'FAN10G2513' => 'fan', 'FAN10G3402' => 'fan', 'FAN10G3564' => 'fan', 'FAN10G3987' => 'fan', 'FAN13G1490' => 'fan', 'FAN14G5857' => 'fan', 'FAN18G1188' => 'fan', 'FvH4_5g00750' => 'fve', 'FvH4_6g13410' => 'fve', 'FvH4_7g11740' => 'fve', 'FvH4_7g17410' => 'fve', 'FvH4_7g18860' => 'fve', 'Glyma.01G099100' => 'gma', 'Glyma.01G142300' => 'gma', 'Glyma.03G025500' => 'gma', 'Glyma.03G069700' => 'gma', 'Glyma.03G260000' => 'gma', 'Glyma.09G269800' => 'gma', 'Glyma.10G208700' => 'gma', 'Glyma.18G220400' => 'gma', 'Glyma.20G182000' => 'gma', 'Gohir.A01G221726' => 'ghi', 'Gohir.A07G134600' => 'ghi', 'Gohir.A07G146000' => 'ghi', 'Gohir.A08G173900' => 'ghi', 'Gohir.A09G194900' => 'ghi', 'Gohir.A10G204100' => 'ghi', 'Gohir.A11G080600' => 'ghi', 'Gohir.A11G327500' => 'ghi', 'Gohir.A12G101800' => 'ghi', 'Gohir.D01G211200' => 'ghi', 'Gohir.D07G139200' => 'ghi', 'Gohir.D07G152100' => 'ghi', 'Gohir.D08G192600' => 'ghi', 'Gohir.D09G189200' => 'ghi', 'Gohir.D10G212000' => 'ghi', 'Gohir.D11G085200' => 'ghi', 'Gohir.D11G346400' => 'ghi', 'Gohir.D12G104800' => 'ghi', 'Gorai.001G151300' => 'gra', 'Gorai.001G174100' => 'gra', 'Gorai.002G257000' => 'gra', 'Gorai.004G202600' => 'gra', 'Gorai.007G090900' => 'gra', 'Gorai.007G376700' => 'gra', 'Gorai.008G114100' => 'gra', 'Gorai.011G237900' => 'gra', 'GSVIVG01005450001' => 'vvi', 'GSVIVG01016232001' => 'vvi', 'GSVIVG01026157001' => 'vvi', 'GSVIVG01027419001' => 'vvi', 'GSVIVG01027631001' => 'vvi', 'GSVIVG01034143001' => 'vvi', 'HanXRQChr03g0093921' => 'han', 'HanXRQChr04g0120001' => 'han', 'HanXRQChr04g0122561' => 'han', 'HanXRQChr09g0246851' => 'han', 'HanXRQChr10g0293311' => 'han', 'HanXRQChr13g0425231' => 'han', 'HanXRQChr16g0532571' => 'han', 'Haze_09050' => 'cav', 'Haze_15715' => 'cav', 'Haze_15716' => 'cav', 'Haze_16803' => 'cav', 'Haze_16850' => 'cav', 'Hma1.2p1_0301F.1_g118655' => 'hma', 'Hma1.2p1_0309F.1_g120590' => 'hma', 'Hma1.2p1_0936F.1_g238900' => 'hma', 'Hma1.2p1_3552F.1_g336740' => 'hma', 'HPP92_003520' => 'vpl', 'HPP92_006628' => 'vpl', 'HPP92_006645' => 'vpl', 'HPP92_014669' => 'vpl', 'HPP92_015077' => 'vpl', 'Hund16742' => 'sun', 'Hund17022' => 'sun', 'Lalb_Chr02g0152131' => 'lal', 'Lalb_Chr05g0225371' => 'lal', 'Lalb_Chr07g0189841' => 'lal', 'Lalb_Chr07g0192961' => 'lal', 'Lalb_Chr12g0208221' => 'lal', 'Lalb_Chr13g0291211' => 'lal', 'Lalb_Chr13g0291781' => 'lal', 'Lalb_Chr18g0044651' => 'lal', 'Lalb_Chr21g0313731' => 'lal', 'Lj1g0022533' => 'lja', 'Lj2A18T50' => 'lonja', 'Lj2A92G93' => 'lonja', 'Lj3A965T73' => 'lonja', 'Lj3g0000673' => 'lja', 'Lj3g0002666' => 'lja', 'Lj4g0016985' => 'lja', 'Lj5g0003625' => 'lja', 'Lj7A529G36' => 'lonja', 'Lj9A569T49' => 'lonja', 'Lj9A604T63' => 'lonja', 'Lsat_1_v5_gn_3_132060' => 'lsa', 'Lsat_1_v5_gn_4_68941' => 'lsa', 'Lsat_1_v5_gn_5_95580' => 'lsa', 'Lsat_1_v5_gn_7_161' => 'lsa', 'Lsat_1_v5_gn_7_7041' => 'lsa', 'Lsat_1_v5_gn_9_33481' => 'lsa', 'Lsat_1_v5_gn_9_68260' => 'lsa', 'Manes.01G073100' => 'mes', 'Manes.01G266300' => 'mes', 'Manes.02G033300' => 'mes', 'Manes.05G017900' => 'mes', 'Manes.05G046100' => 'mes', 'Manes.08G080900' => 'mes', 'Manes.10G049400' => 'mes', 'Mapoly0009s0186' => 'mpo', 'Mapoly0036s0118' => 'mpo', 'Mapoly0101s0046' => 'mpo', 'MBI04_g30218_MAGBIO' => 'mbi', 'MBI04_g35564_MAGBIO' => 'mbi', 'MBI12_g34011_MAGBIO' => 'mbi', 'MBI14_g04655_MAGBIO' => 'mbi', 'MCO07G653' => 'mco', 'MCO10G173' => 'mco', 'MD01G1087100' => 'mdo', 'MD01G1104200' => 'mdo', 'MD02G1205100' => 'mdo', 'MD04G1079200' => 'mdo', 'MD04G1131400' => 'mdo', 'MD07G1121600' => 'mdo', 'MD07G1157300' => 'mdo', 'MD07G1171000' => 'mdo', 'MD12G1144500' => 'mdo', 'Medtr1g094610' => 'mtr', 'Medtr4g021795' => 'mtr', 'Medtr4g023760' => 'mtr', 'Medtr7g118050' => 'mtr', 'MELO3C005582.2' => 'cme', 'MELO3C005989.2' => 'cme', 'MELO3C006192.2' => 'cme', 'MELO3C009248.2' => 'cme', 'MELO3C019817.2' => 'cme', 'Migut.B01625' => 'egut', 'Migut.B01915' => 'egut', 'Migut.F01721' => 'egut', 'Migut.J00314' => 'egut', 'MSTRG.20742' => 'ama', 'MSTRG.8134' => 'ama', 'Nitab4.5_0000096g0010' => 'nta', 'Nitab4.5_0000202g0030' => 'nta', 'Nitab4.5_0000216g0370' => 'nta', 'Nitab4.5_0000457g0230' => 'nta', 'Nitab4.5_0001702g0170' => 'nta', 'Nitab4.5_0003607g0010' => 'nta', 'Nitab4.5_0004917g0020' => 'nta', 'Nitab4.5_0007059g0010' => 'nta', 'Nitab4.5_0007184g0010' => 'nta', 'Nitab4.5_0007346g0020' => 'nta', 'Nn1g00410' => 'nnu', 'Nn1g01252' => 'nnu', 'Nn2g11168' => 'nnu', 'Nn2g13403' => 'nnu', 'Nn2g13760' => 'nnu', 'Nn4g26380' => 'nnu', 'Oeu000806.2' => 'oeu', 'Oeu005788.1' => 'oeu', 'Oeu006900.3' => 'oeu', 'Oeu007797.1' => 'oeu', 'Oeu011932.1' => 'oeu', 'Oeu022739.1' => 'oeu', 'Oeu037918.1' => 'oeu', 'Oeu055490.2' => 'oeu', 'Os01g0844400' => 'osa', 'Os02g0819100' => 'osa', 'Os03g0804300' => 'osa', 'Os05g0458000' => 'osa', 'Os07g0467800' => 'osa', 'Os12g0602200' => 'osa', 'Peaxi162Scf00013g03444' => 'pax', 'Peaxi162Scf00094g01120' => 'pax', 'Peaxi162Scf00191g01211' => 'pax', 'Peaxi162Scf00238g01110' => 'pax', 'Peaxi162Scf00330g00719' => 'pax', 'Peaxi162Scf00627g00018' => 'pax', 'PGR031G2686' => 'pgr', 'PGR042G0809' => 'pgr', 'PGR142G0193' => 'pgr', 'PGSC0003DMG400011066' => 'stu', 'PGSC0003DMG400012041' => 'stu', 'PGSC0003DMG400013678' => 'stu', 'PGSC0003DMG400023477' => 'stu', 'PGSC0003DMG400025956' => 'stu', 'PGSC0003DMG401019151' => 'stu', 'Phvul.006G116400' => 'pvu', 'Phvul.007G097300' => 'pvu', 'Phvul.010G015000' => 'pvu', 'Phvul.010G083900' => 'pvu', 'Potri.001G117100' => 'ptr', 'Potri.002G147300' => 'ptr', 'Potri.003G115600' => 'ptr', 'Potri.006G087400' => 'ptr', 'Potri.010G226100' => 'ptr', 'Potri.014G069200' => 'ptr', 'Potri.014G104000' => 'ptr', 'Potri.016G100200' => 'ptr', 'Pp3c10_20450' => 'ppa', 'Pp3c1_42400' => 'ppa', 'Pp3c3_24390' => 'ppa', 'Pp3c3_2860' => 'ppa', 'PRCOL_00003193' => 'pco', 'Prupe.2G144500' => 'ppe', 'Prupe.2G195700' => 'ppe', 'Prupe.2G209800' => 'ppe', 'Prupe.5G080000' => 'ppe', 'Prupe.6G257900' => 'ppe', 'Psat3g001160' => 'psa', 'Psat6g181880' => 'psa', 'Psat7g233720' => 'psa', 'PSO063G7587' => 'pso', 'PSO339G2145' => 'pso', 'PSO339G3369' => 'pso', 'PSO478G2747' => 'pso', 'PSO513G0140' => 'pso', 'PSO782G1614' => 'pso', 'PSO782G4889' => 'pso', 'PSO782G5485' => 'pso', 'PSO801G0241' => 'pso', 'QL07p048854' => 'qlo', 'QL08p046745' => 'qlo', 'QL08p052606' => 'qlo', 'QL08p053414' => 'qlo', 'QL08p054868' => 'qlo', 'RcHm_v2.0_Chr1g0350251' => 'rch', 'RcHm_v2.0_Chr1g0360851' => 'rch', 'RcHm_v2.0_Chr1g0362791' => 'rch', 'RcHm_v2.0_Chr3g0466281' => 'rch', 'RcHm_v2.0_Chr7g0201481' => 'rch', 'Rhsim01G0148600' => 'rsi', 'Rhsim05G0194400' => 'rsi', 'Rhsim07G0000700' => 'rsi', 'Rhsim07G0000800' => 'rsi', 'Rhsim07G0027900' => 'rsi', 'Rhsim09G0149500' => 'rsi', 'RhsimUnG0186900' => 'rsi', 'Sabra01G0089900' => 'sbr', 'Sabra02G0114700' => 'sbr', 'Sabra02G0116300' => 'sbr', 'Sabra03G0080100' => 'sbr', 'Sabra08G0024300' => 'sbr', 'Sabra10G0174300' => 'sbr', 'Sabra14G0048900' => 'sbr', 'Sabra14G0076500' => 'sbr', 'SalBow5G2513' => 'sbo', 'Sc01g0002300' => 'sci', 'Sc01g0004450' => 'sci', 'Sc06g0001680' => 'sci', 'Sc23g0003580' => 'sci', 'Sed0000913' => 'sed', 'Sed0001655' => 'sed', 'Sed0007745' => 'sed', 'Sed0010951' => 'sed', 'Sed0017599' => 'sed', 'Sed0021405' => 'sed', 'Sed0022810' => 'sed', 'SEGI_07099' => 'sgi', 'SEGI_11931' => 'sgi', 'SEGI_13187' => 'sgi', 'SEGI_29958' => 'sgi', 'SEGI_36351' => 'sgi', 'SGA_v2.0_scaffold126G33770' => 'sas', 'SGA_v2.0_scaffold153G37003' => 'sas', 'SGA_v2.0_scaffold2G01359' => 'sas', 'SGA_v2.0_scaffold5G03064' => 'sas', 'SGA_v2.0_scaffold95G28903' => 'sas', 'SHI12701' => 'shi', 'SHI26410' => 'shi', 'SHI38997' => 'shi', 'SHI53759' => 'shi', 'SHI53886' => 'shi', 'SHI54714' => 'shi', 'SMO011G0041' => 'smo', 'SMO146G0251' => 'smo', 'SMO160G0004' => 'smo', 'SMO174G0057' => 'smo', 'SMO244G0089' => 'smo', 'SMO296G0011' => 'smo', 'Solyc01g091280.3' => 'sly', 'Solyc05g047610.3' => 'sly', 'Solyc05g047640.3' => 'sly', 'Solyc05g055630.3' => 'sly', 'Solyc10g018160.2' => 'sly', 'Solyc10g084820.2' => 'sly', 'Solyc10g086565.2' => 'sly', 'Sopen01g037030' => 'spe', 'Sopen05g027920' => 'spe', 'Sopen05g034070' => 'spe', 'Sopen10g007260' => 'spe', 'Sopen10g034260' => 'spe', 'Sopen10g035950' => 'spe', 'Sp3g07710' => 'spa', 'Sp4g27420' => 'spa', 'Sp5g02450' => 'spa', 'Sp6g01280' => 'spa', 'Sp6g38480' => 'spa', 'Sp7g20780' => 'spa', 'TAR374G1413' => 'tar', 'TAR623G1777' => 'tar', 'TAR629G2370' => 'tar', 'TAR633G1759' => 'tar', 'TAR636G3387' => 'tar', 'THA.LOC104802447' => 'tha', 'THA.LOC104813916' => 'tha', 'THA.LOC104816423' => 'tha', 'THA.LOC104817246' => 'tha', 'THA.LOC104825895' => 'tha', 'Thecc.01G335200' => 'tca', 'Thecc.01G377400' => 'tca', 'Thecc.03G262200' => 'tca', 'Thecc.05G036800' => 'tca', 'Thecc.10G080500' => 'tca', 'Thecc.10G080800' => 'tca', 'Thhalv10001560m.g' => 'esa', 'Thhalv10006120m.g' => 'esa', 'Thhalv10014375m.g' => 'esa', 'Thhalv10021264m.g' => 'esa', 'Thhalv10028856m.g' => 'esa', 'TPR.G1914' => 'tpr', 'TPR.G4757' => 'tpr', 'TPR.G5595' => 'tpr', 'TWI14G0952' => 'twi', 'TWI14G1307' => 'twi', 'TWI38G2143' => 'twi', 'TWI59G0826' => 'twi', 'TWI77G0527' => 'twi', 'TWI81G0150' => 'twi', 'unitig_21.g21018' => 'ugi', 'unitig_26.g9725' => 'ugi', 'unitig_744.g24653' => 'ugi', 'unitig_749.g13778' => 'ugi', 'unitig_899.g15035' => 'ugi', 'vmacro04296' => 'vma', 'vmacro04852' => 'vma', 'vmacro13404' => 'vma', 'vmacro20169' => 'vma', 'vmacro21014' => 'vma', 'VMungo0331G0237' => 'vmu', 'VMungo0331G0706' => 'vmu', 'VMungo0331G1361' => 'vmu', 'VMungo0331G1489' => 'vmu', 'VMungo0540G1037' => 'vmu', 'VMungo0720G2487' => 'vmu', 'VMungo0720G2721' => 'vmu', 'Zm00001eb086860' => 'zma', 'Zm00001eb104760' => 'zma', 'Zm00001eb148220' => 'zma', 'Zm00001eb259030' => 'zma', 'Zm00001eb289590' => 'zma', 'Zm00001eb420150' => 'zma' ), 'gf_id' => 'HOM05D000968', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000968' ), 'data_identifier' => 'HOM05D000968', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000968', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p31690' => 'bna', 'A03p36040' => 'bna', 'A03p53730' => 'bna', 'A04p01410' => 'bna', 'A05p05420' => 'bna', 'A05p39630' => 'bna', 'A05p39640' => 'bna', 'A09p00970' => 'bna', 'A09p53060' => 'bna', 'A10p31890' => 'bna', 'Aa31LG10G15040' => 'aar', 'Aa31LG1G21090' => 'aar', 'Aa31LG1G26900' => 'aar', 'Aa31LG3G1820' => 'aar', 'Aa31LG5G1100' => 'aar', 'Aa31LG6G4740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2265' => 'aag', 'Actinidia07998' => 'ach', 'Actinidia11266' => 'ach', 'Actinidia12682' => 'ach', 'Actinidia26479' => 'ach', 'Actinidia31406' => 'ach', 'Actinidia32437' => 'ach', 'Actinidia38862' => 'ach', 'Ah.05g174230' => 'amhyb', 'Ah.05g179070' => 'amhyb', 'Ah.05g179090' => 'amhyb', 'Ah.12g059950' => 'amhyb', 'AL3G20480' => 'aly', 'AL4G44520' => 'aly', 'AL5G43110' => 'aly', 'AL6G13890' => 'aly', 'AL6G52620' => 'aly', 'AL7G30830' => 'aly', 'Aqoxy1G00899' => 'aox', 'Aqoxy5G04333' => 'aox', 'Aqoxy7G00641' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3IZ0NN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4EF6AW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W9P8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79GA3M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C43NQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFCU6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G95YVJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCHK29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LU1UG8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX91RN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGB4B1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8DA0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9H7JI' => 'arhy', 'AT3G09320' => 'ath', 'AT3G60800' => 'ath', 'AT4G00840' => 'ath', 'AT4G22750' => 'ath', 'AT5G04270' => 'ath', 'ATR0090G003' => 'atr', 'ATR0559G349' => 'atr', 'ATR0680G261' => 'atr', 'ATR0810G048' => 'atr', 'Atru.chr12.831' => 'acertr', 'Atru.chr5.303' => 'acertr', 'Atru.chr5.748' => 'acertr', 'Atru.chr8.1999' => 'acertr', 'Atru.chr9.1436' => 'acertr', 'AUR62004211' => 'cqu', 'AUR62004548' => 'cqu', 'AUR62013637' => 'cqu', 'AUR62022662' => 'cqu', 'AUR62025777' => 'cqu', 'AUR62042386' => 'cqu', 'BcaB01g02310' => 'bca', 'BcaB01g06062' => 'bca', 'BcaB02g08975' => 'bca', 'BcaB02g08980' => 'bca', 'BcaC01g04228' => 'bca', 'BcaC01g06830' => 'bca', 'BcaC02g10186' => 'bca', 'BcaC02g12214' => 'bca', 'BcaC04g24101' => 'bca', 'BcaC05g29520' => 'bca', 'BcaC05g29661' => 'bca', 'BcaC06g32130' => 'bca', 'BcaC06g32131' => 'bca', 'BcaC07g40601' => 'bca', 'BcaC07g42641' => 'bca', 'BcaNung01038' => 'bca', 'BcaNung01676' => 'bca', 'BcaNung02480' => 'bca', 'BcaNung07376' => 'bca', 'BolC3t16146H' => 'bol', 'BolC3t16637H' => 'bol', 'BolC4t22257H' => 'bol', 'BolC4t24728H' => 'bol', 'BolC5t34517H' => 'bol', 'BolC7t45703H' => 'bol', 'BolC8t51166H' => 'bol', 'BolC9t53038H' => 'bol', 'BolC9t60000H' => 'bol', 'BraA01t01345Z' => 'bra', 'BraA01t01346Z' => 'bra', 'BraA01t01348Z' => 'bra', 'BraA03t12347Z' => 'bra', 'BraA03t12775Z' => 'bra', 'BraA03t14439Z' => 'bra', 'BraA04t15860Z' => 'bra', 'BraA05t19511Z' => 'bra', 'BraA05t22746Z' => 'bra', 'BraA09t35767Z' => 'bra', 'BraA09t40732Z' => 'bra', 'BraA10t45233Z' => 'bra', 'C03p38720' => 'bna', 'C03p43680' => 'bna', 'C04p06350' => 'bna', 'C04p31800' => 'bna', 'C05p58680' => 'bna', 'C07p52110' => 'bna', 'C08p35760' => 'bna', 'C09p01050' => 'bna', 'C09p72600' => 'bna', 'CAN.G106.2' => 'can', 'CAN.G1482.1' => 'can', 'CAN.G324.12' => 'can', 'CAN.G388.20' => 'can', 'CAN.G412.7' => 'can', 'CAN.G694.32' => 'can', 'CAN.G92.12' => 'can', 'CANSAT11G2353' => 'cansat', 'CANSAT21G1398' => 'cansat', 'CANSAT56G2456' => 'cansat', 'CANSAT56G3031' => 'cansat', 'CANSAT56G4539' => 'cansat', 'CARHR083680' => 'chi', 'CARHR171190' => 'chi', 'CARHR209010' => 'chi', 'CARHR229680' => 'chi', 'CARHR249490' => 'chi', 'Carub.0003s0844' => 'cru', 'Carub.0005s2755' => 'cru', 'Carub.0006s0322' => 'cru', 'Carub.0006s3586' => 'cru', 'Carub.0007s1855' => 'cru', 'Ca_07808_v3' => 'car', 'Ca_09535_v3' => 'car', 'Ca_10548_v3' => 'car', 'Ca_19913_v3' => 'car', 'Ca_19916_v3' => 'car', 'Ca_19975_v3' => 'car', 'CBR_g22876' => 'cbr', 'CBR_g22879' => 'cbr', 'CBR_g38491' => 'cbr', 'CBR_g54185' => 'cbr', 'CBR_g54190' => 'cbr', 'Cc02_g11020' => 'ccan', 'Cc02_g23920' => 'ccan', 'Cc02_g39860' => 'ccan', 'Cc02_g39870' => 'ccan', 'Cc03_g06760' => 'ccan', 'Cc06_g02450' => 'ccan', 'Cc09_g09450' => 'ccan', 'CDE02G1959' => 'cde', 'CDE04G0600' => 'cde', 'CDE07G1996' => 'cde', 'CDE07G2078' => 'cde', 'CDE11G0611' => 'cde', 'Cfa001683' => 'cfa', 'Cfa001734' => 'cfa', 'Cfa001737' => 'cfa', 'Cfa003751' => 'cfa', 'Cfa012019' => 'cfa', 'Cfa017353' => 'cfa', 'Cfa017732' => 'cfa', 'Cfa022464' => 'cfa', 'Ciclev10012400m.g' => 'ccl', 'Ciclev10021242m.g' => 'ccl', 'Ciclev10021302m.g' => 'ccl', 'Ciclev10021463m.g' => 'ccl', 'Ciclev10032359m.g' => 'ccl', 'CiPaw.01G081000' => 'cil', 'CiPaw.01G262500' => 'cil', 'CiPaw.01G269800' => 'cil', 'CiPaw.02G168400' => 'cil', 'CiPaw.05G119500' => 'cil', 'CiPaw.11G147300' => 'cil', 'ClCG01G003630' => 'cla', 'ClCG05G000510' => 'cla', 'ClCG05G002300' => 'cla', 'ClCG08G007650' => 'cla', 'ClCG10G021250' => 'cla', 'COL.COLO4_06218' => 'col', 'COL.COLO4_12538' => 'col', 'COL.COLO4_14775' => 'col', 'COL.COLO4_23875' => 'col', 'Cpa.g.sc141.16' => 'cpa', 'Cpa.g.sc169.16' => 'cpa', 'Cpa.g.sc244.4' => 'cpa', 'Cpa.g.sc244.5' => 'cpa', 'Cpa.g.sc29.87' => 'cpa', 'Cpa.g.sc53.115' => 'cpa', 'Cre03.g207502' => 'cre', 'Cre06.g277000' => 'cre', 'Cre09.g394050' => 'cre', 'CsaV3_3G007680' => 'csa', 'CsaV3_3G009710' => 'csa', 'CsaV3_3G034790' => 'csa', 'CsaV3_5G003750' => 'csa', 'CsaV3_6G036620' => 'csa', 'CSS0002288' => 'camsi', 'CSS0011250' => 'camsi', 'CSS0021619' => 'camsi', 'CSS0046701' => 'camsi', 'DCAR_006420' => 'dca', 'DCAR_006865' => 'dca', 'DCAR_008558' => 'dca', 'DCAR_028754' => 'dca', 'DCAR_028755' => 'dca', 'Dinv31218' => 'din', 'Dinv32371' => 'din', 'Dinv34250' => 'din', 'Dinv37156' => 'din', 'Dinv43704' => 'din', 'Duzib093G1811' => 'dzi', 'Duzib106G1622' => 'dzi', 'Duzib114G0504' => 'dzi', 'Duzib128G0338' => 'dzi', 'Duzib128G1577' => 'dzi', 'Duzib133G0104' => 'dzi', 'Duzib133G1080' => 'dzi', 'Duzib138G0324' => 'dzi', 'Duzib138G0394' => 'dzi', 'Duzib205G0122' => 'dzi', 'Duzib268G1020' => 'dzi', 'Duzib268G1359' => 'dzi', 'ECA232G3929' => 'eca', 'ECA236G2210' => 'eca', 'ECA236G2287' => 'eca', 'ECA240G4568' => 'eca', 'ECA247G0894' => 'eca', 'EL10Ac1g00200' => 'bvu', 'EL10Ac1g00886' => 'bvu', 'EL10As1g23091' => 'bvu', 'EL10As1g23092' => 'bvu', 'Eucgr.A01284' => 'egr', 'Eucgr.A01285' => 'egr', 'Eucgr.D02456' => 'egr', 'Eucgr.E00018' => 'egr', 'Eucgr.E01439' => 'egr', 'Eucgr.G02859' => 'egr', 'FAN01G0168' => 'fan', 'FAN01G0453' => 'fan', 'FAN01G2761' => 'fan', 'FAN02G1239' => 'fan', 'FAN03G0645' => 'fan', 'FAN03G2707' => 'fan', 'FAN03G2978' => 'fan', 'FAN04G0227' => 'fan', 'FAN06G0091' => 'fan', 'FAN06G1418' => 'fan', 'FAN06G1512' => 'fan', 'FAN06G1986' => 'fan', 'FAN06G2905' => 'fan', 'FAN06G4325' => 'fan', 'FAN08G0033' => 'fan', 'FAN09G0642' => 'fan', 'FAN10G1763' => 'fan', 'FAN10G2026' => 'fan', 'FAN10G2513' => 'fan', 'FAN10G3402' => 'fan', 'FAN10G3564' => 'fan', 'FAN10G3987' => 'fan', 'FAN13G1490' => 'fan', 'FAN14G5857' => 'fan', 'FAN18G1188' => 'fan', 'FvH4_5g00750' => 'fve', 'FvH4_6g13410' => 'fve', 'FvH4_7g11740' => 'fve', 'FvH4_7g17410' => 'fve', 'FvH4_7g18860' => 'fve', 'Glyma.01G099100' => 'gma', 'Glyma.01G142300' => 'gma', 'Glyma.03G025500' => 'gma', 'Glyma.03G069700' => 'gma', 'Glyma.03G260000' => 'gma', 'Glyma.09G269800' => 'gma', 'Glyma.10G208700' => 'gma', 'Glyma.18G220400' => 'gma', 'Glyma.20G182000' => 'gma', 'Gohir.A01G221726' => 'ghi', 'Gohir.A07G134600' => 'ghi', 'Gohir.A07G146000' => 'ghi', 'Gohir.A08G173900' => 'ghi', 'Gohir.A09G194900' => 'ghi', 'Gohir.A10G204100' => 'ghi', 'Gohir.A11G080600' => 'ghi', 'Gohir.A11G327500' => 'ghi', 'Gohir.A12G101800' => 'ghi', 'Gohir.D01G211200' => 'ghi', 'Gohir.D07G139200' => 'ghi', 'Gohir.D07G152100' => 'ghi', 'Gohir.D08G192600' => 'ghi', 'Gohir.D09G189200' => 'ghi', 'Gohir.D10G212000' => 'ghi', 'Gohir.D11G085200' => 'ghi', 'Gohir.D11G346400' => 'ghi', 'Gohir.D12G104800' => 'ghi', 'Gorai.001G151300' => 'gra', 'Gorai.001G174100' => 'gra', 'Gorai.002G257000' => 'gra', 'Gorai.004G202600' => 'gra', 'Gorai.007G090900' => 'gra', 'Gorai.007G376700' => 'gra', 'Gorai.008G114100' => 'gra', 'Gorai.011G237900' => 'gra', 'GSVIVG01005450001' => 'vvi', 'GSVIVG01016232001' => 'vvi', 'GSVIVG01026157001' => 'vvi', 'GSVIVG01027419001' => 'vvi', 'GSVIVG01027631001' => 'vvi', 'GSVIVG01034143001' => 'vvi', 'HanXRQChr03g0093921' => 'han', 'HanXRQChr04g0120001' => 'han', 'HanXRQChr04g0122561' => 'han', 'HanXRQChr09g0246851' => 'han', 'HanXRQChr10g0293311' => 'han', 'HanXRQChr13g0425231' => 'han', 'HanXRQChr16g0532571' => 'han', 'Haze_09050' => 'cav', 'Haze_15715' => 'cav', 'Haze_15716' => 'cav', 'Haze_16803' => 'cav', 'Haze_16850' => 'cav', 'Hma1.2p1_0301F.1_g118655' => 'hma', 'Hma1.2p1_0309F.1_g120590' => 'hma', 'Hma1.2p1_0936F.1_g238900' => 'hma', 'Hma1.2p1_3552F.1_g336740' => 'hma', 'HPP92_003520' => 'vpl', 'HPP92_006628' => 'vpl', 'HPP92_006645' => 'vpl', 'HPP92_014669' => 'vpl', 'HPP92_015077' => 'vpl', 'Hund16742' => 'sun', 'Hund17022' => 'sun', 'Lalb_Chr02g0152131' => 'lal', 'Lalb_Chr05g0225371' => 'lal', 'Lalb_Chr07g0189841' => 'lal', 'Lalb_Chr07g0192961' => 'lal', 'Lalb_Chr12g0208221' => 'lal', 'Lalb_Chr13g0291211' => 'lal', 'Lalb_Chr13g0291781' => 'lal', 'Lalb_Chr18g0044651' => 'lal', 'Lalb_Chr21g0313731' => 'lal', 'Lj1g0022533' => 'lja', 'Lj2A18T50' => 'lonja', 'Lj2A92G93' => 'lonja', 'Lj3A965T73' => 'lonja', 'Lj3g0000673' => 'lja', 'Lj3g0002666' => 'lja', 'Lj4g0016985' => 'lja', 'Lj5g0003625' => 'lja', 'Lj7A529G36' => 'lonja', 'Lj9A569T49' => 'lonja', 'Lj9A604T63' => 'lonja', 'Lsat_1_v5_gn_3_132060' => 'lsa', 'Lsat_1_v5_gn_4_68941' => 'lsa', 'Lsat_1_v5_gn_5_95580' => 'lsa', 'Lsat_1_v5_gn_7_161' => 'lsa', 'Lsat_1_v5_gn_7_7041' => 'lsa', 'Lsat_1_v5_gn_9_33481' => 'lsa', 'Lsat_1_v5_gn_9_68260' => 'lsa', 'Manes.01G073100' => 'mes', 'Manes.01G266300' => 'mes', 'Manes.02G033300' => 'mes', 'Manes.05G017900' => 'mes', 'Manes.05G046100' => 'mes', 'Manes.08G080900' => 'mes', 'Manes.10G049400' => 'mes', 'Mapoly0009s0186' => 'mpo', 'Mapoly0036s0118' => 'mpo', 'Mapoly0101s0046' => 'mpo', 'MBI04_g30218_MAGBIO' => 'mbi', 'MBI04_g35564_MAGBIO' => 'mbi', 'MBI12_g34011_MAGBIO' => 'mbi', 'MBI14_g04655_MAGBIO' => 'mbi', 'MCO07G653' => 'mco', 'MCO10G173' => 'mco', 'MD01G1087100' => 'mdo', 'MD01G1104200' => 'mdo', 'MD02G1205100' => 'mdo', 'MD04G1079200' => 'mdo', 'MD04G1131400' => 'mdo', 'MD07G1121600' => 'mdo', 'MD07G1157300' => 'mdo', 'MD07G1171000' => 'mdo', 'MD12G1144500' => 'mdo', 'Medtr1g094610' => 'mtr', 'Medtr4g021795' => 'mtr', 'Medtr4g023760' => 'mtr', 'Medtr7g118050' => 'mtr', 'MELO3C005582.2' => 'cme', 'MELO3C005989.2' => 'cme', 'MELO3C006192.2' => 'cme', 'MELO3C009248.2' => 'cme', 'MELO3C019817.2' => 'cme', 'Migut.B01625' => 'egut', 'Migut.B01915' => 'egut', 'Migut.F01721' => 'egut', 'Migut.J00314' => 'egut', 'MSTRG.20742' => 'ama', 'MSTRG.8134' => 'ama', 'Nitab4.5_0000096g0010' => 'nta', 'Nitab4.5_0000202g0030' => 'nta', 'Nitab4.5_0000216g0370' => 'nta', 'Nitab4.5_0000457g0230' => 'nta', 'Nitab4.5_0001702g0170' => 'nta', 'Nitab4.5_0003607g0010' => 'nta', 'Nitab4.5_0004917g0020' => 'nta', 'Nitab4.5_0007059g0010' => 'nta', 'Nitab4.5_0007184g0010' => 'nta', 'Nitab4.5_0007346g0020' => 'nta', 'Nn1g00410' => 'nnu', 'Nn1g01252' => 'nnu', 'Nn2g11168' => 'nnu', 'Nn2g13403' => 'nnu', 'Nn2g13760' => 'nnu', 'Nn4g26380' => 'nnu', 'Oeu000806.2' => 'oeu', 'Oeu005788.1' => 'oeu', 'Oeu006900.3' => 'oeu', 'Oeu007797.1' => 'oeu', 'Oeu011932.1' => 'oeu', 'Oeu022739.1' => 'oeu', 'Oeu037918.1' => 'oeu', 'Oeu055490.2' => 'oeu', 'Os01g0844400' => 'osa', 'Os02g0819100' => 'osa', 'Os03g0804300' => 'osa', 'Os05g0458000' => 'osa', 'Os07g0467800' => 'osa', 'Os12g0602200' => 'osa', 'Peaxi162Scf00013g03444' => 'pax', 'Peaxi162Scf00094g01120' => 'pax', 'Peaxi162Scf00191g01211' => 'pax', 'Peaxi162Scf00238g01110' => 'pax', 'Peaxi162Scf00330g00719' => 'pax', 'Peaxi162Scf00627g00018' => 'pax', 'PGR031G2686' => 'pgr', 'PGR042G0809' => 'pgr', 'PGR142G0193' => 'pgr', 'PGSC0003DMG400011066' => 'stu', 'PGSC0003DMG400012041' => 'stu', 'PGSC0003DMG400013678' => 'stu', 'PGSC0003DMG400023477' => 'stu', 'PGSC0003DMG400025956' => 'stu', 'PGSC0003DMG401019151' => 'stu', 'Phvul.006G116400' => 'pvu', 'Phvul.007G097300' => 'pvu', 'Phvul.010G015000' => 'pvu', 'Phvul.010G083900' => 'pvu', 'Potri.001G117100' => 'ptr', 'Potri.002G147300' => 'ptr', 'Potri.003G115600' => 'ptr', 'Potri.006G087400' => 'ptr', 'Potri.010G226100' => 'ptr', 'Potri.014G069200' => 'ptr', 'Potri.014G104000' => 'ptr', 'Potri.016G100200' => 'ptr', 'Pp3c10_20450' => 'ppa', 'Pp3c1_42400' => 'ppa', 'Pp3c3_24390' => 'ppa', 'Pp3c3_2860' => 'ppa', 'PRCOL_00003193' => 'pco', 'Prupe.2G144500' => 'ppe', 'Prupe.2G195700' => 'ppe', 'Prupe.2G209800' => 'ppe', 'Prupe.5G080000' => 'ppe', 'Prupe.6G257900' => 'ppe', 'Psat3g001160' => 'psa', 'Psat6g181880' => 'psa', 'Psat7g233720' => 'psa', 'PSO063G7587' => 'pso', 'PSO339G2145' => 'pso', 'PSO339G3369' => 'pso', 'PSO478G2747' => 'pso', 'PSO513G0140' => 'pso', 'PSO782G1614' => 'pso', 'PSO782G4889' => 'pso', 'PSO782G5485' => 'pso', 'PSO801G0241' => 'pso', 'QL07p048854' => 'qlo', 'QL08p046745' => 'qlo', 'QL08p052606' => 'qlo', 'QL08p053414' => 'qlo', 'QL08p054868' => 'qlo', 'RcHm_v2.0_Chr1g0350251' => 'rch', 'RcHm_v2.0_Chr1g0360851' => 'rch', 'RcHm_v2.0_Chr1g0362791' => 'rch', 'RcHm_v2.0_Chr3g0466281' => 'rch', 'RcHm_v2.0_Chr7g0201481' => 'rch', 'Rhsim01G0148600' => 'rsi', 'Rhsim05G0194400' => 'rsi', 'Rhsim07G0000700' => 'rsi', 'Rhsim07G0000800' => 'rsi', 'Rhsim07G0027900' => 'rsi', 'Rhsim09G0149500' => 'rsi', 'RhsimUnG0186900' => 'rsi', 'Sabra01G0089900' => 'sbr', 'Sabra02G0114700' => 'sbr', 'Sabra02G0116300' => 'sbr', 'Sabra03G0080100' => 'sbr', 'Sabra08G0024300' => 'sbr', 'Sabra10G0174300' => 'sbr', 'Sabra14G0048900' => 'sbr', 'Sabra14G0076500' => 'sbr', 'SalBow5G2513' => 'sbo', 'Sc01g0002300' => 'sci', 'Sc01g0004450' => 'sci', 'Sc06g0001680' => 'sci', 'Sc23g0003580' => 'sci', 'Sed0000913' => 'sed', 'Sed0001655' => 'sed', 'Sed0007745' => 'sed', 'Sed0010951' => 'sed', 'Sed0017599' => 'sed', 'Sed0021405' => 'sed', 'Sed0022810' => 'sed', 'SEGI_07099' => 'sgi', 'SEGI_11931' => 'sgi', 'SEGI_13187' => 'sgi', 'SEGI_29958' => 'sgi', 'SEGI_36351' => 'sgi', 'SGA_v2.0_scaffold126G33770' => 'sas', 'SGA_v2.0_scaffold153G37003' => 'sas', 'SGA_v2.0_scaffold2G01359' => 'sas', 'SGA_v2.0_scaffold5G03064' => 'sas', 'SGA_v2.0_scaffold95G28903' => 'sas', 'SHI12701' => 'shi', 'SHI26410' => 'shi', 'SHI38997' => 'shi', 'SHI53759' => 'shi', 'SHI53886' => 'shi', 'SHI54714' => 'shi', 'SMO011G0041' => 'smo', 'SMO146G0251' => 'smo', 'SMO160G0004' => 'smo', 'SMO174G0057' => 'smo', 'SMO244G0089' => 'smo', 'SMO296G0011' => 'smo', 'Solyc01g091280.3' => 'sly', 'Solyc05g047610.3' => 'sly', 'Solyc05g047640.3' => 'sly', 'Solyc05g055630.3' => 'sly', 'Solyc10g018160.2' => 'sly', 'Solyc10g084820.2' => 'sly', 'Solyc10g086565.2' => 'sly', 'Sopen01g037030' => 'spe', 'Sopen05g027920' => 'spe', 'Sopen05g034070' => 'spe', 'Sopen10g007260' => 'spe', 'Sopen10g034260' => 'spe', 'Sopen10g035950' => 'spe', 'Sp3g07710' => 'spa', 'Sp4g27420' => 'spa', 'Sp5g02450' => 'spa', 'Sp6g01280' => 'spa', 'Sp6g38480' => 'spa', 'Sp7g20780' => 'spa', 'TAR374G1413' => 'tar', 'TAR623G1777' => 'tar', 'TAR629G2370' => 'tar', 'TAR633G1759' => 'tar', 'TAR636G3387' => 'tar', 'THA.LOC104802447' => 'tha', 'THA.LOC104813916' => 'tha', 'THA.LOC104816423' => 'tha', 'THA.LOC104817246' => 'tha', 'THA.LOC104825895' => 'tha', 'Thecc.01G335200' => 'tca', 'Thecc.01G377400' => 'tca', 'Thecc.03G262200' => 'tca', 'Thecc.05G036800' => 'tca', 'Thecc.10G080500' => 'tca', 'Thecc.10G080800' => 'tca', 'Thhalv10001560m.g' => 'esa', 'Thhalv10006120m.g' => 'esa', 'Thhalv10014375m.g' => 'esa', 'Thhalv10021264m.g' => 'esa', 'Thhalv10028856m.g' => 'esa', 'TPR.G1914' => 'tpr', 'TPR.G4757' => 'tpr', 'TPR.G5595' => 'tpr', 'TWI14G0952' => 'twi', 'TWI14G1307' => 'twi', 'TWI38G2143' => 'twi', 'TWI59G0826' => 'twi', 'TWI77G0527' => 'twi', 'TWI81G0150' => 'twi', 'unitig_21.g21018' => 'ugi', 'unitig_26.g9725' => 'ugi', 'unitig_744.g24653' => 'ugi', 'unitig_749.g13778' => 'ugi', 'unitig_899.g15035' => 'ugi', 'vmacro04296' => 'vma', 'vmacro04852' => 'vma', 'vmacro13404' => 'vma', 'vmacro20169' => 'vma', 'vmacro21014' => 'vma', 'VMungo0331G0237' => 'vmu', 'VMungo0331G0706' => 'vmu', 'VMungo0331G1361' => 'vmu', 'VMungo0331G1489' => 'vmu', 'VMungo0540G1037' => 'vmu', 'VMungo0720G2487' => 'vmu', 'VMungo0720G2721' => 'vmu', 'Zm00001eb086860' => 'zma', 'Zm00001eb104760' => 'zma', 'Zm00001eb148220' => 'zma', 'Zm00001eb259030' => 'zma', 'Zm00001eb289590' => 'zma', 'Zm00001eb420150' => 'zma' ) $gf_id = 'HOM05D000968' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000968' ) $data_identifier = 'HOM05D000968' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 19, 'bol' => (int) 9, 'bra' => (int) 12, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 5, 'ccan' => (int) 7, 'cde' => (int) 5, 'cfa' => (int) 8, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 4, 'dca' => (int) 5, 'din' => (int) 5, 'dzi' => (int) 12, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 25, 'fve' => (int) 5, 'gma' => (int) 9, 'ghi' => (int) 18, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 7, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 5, 'sun' => (int) 2, 'lal' => (int) 9, 'lja' => (int) 5, 'lonja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 9, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 2, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 3, 'stu' => (int) 6, 'pvu' => (int) 4, 'ptr' => (int) 8, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 3, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 1, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 5, 'sas' => (int) 5, 'shi' => (int) 6, 'smo' => (int) 6, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 3, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420150' $species_info = array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ) $local_species = 'sgi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000968', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p31690' => 'bna', 'A03p36040' => 'bna', 'A03p53730' => 'bna', 'A04p01410' => 'bna', 'A05p05420' => 'bna', 'A05p39630' => 'bna', 'A05p39640' => 'bna', 'A09p00970' => 'bna', 'A09p53060' => 'bna', 'A10p31890' => 'bna', 'Aa31LG10G15040' => 'aar', 'Aa31LG1G21090' => 'aar', 'Aa31LG1G26900' => 'aar', 'Aa31LG3G1820' => 'aar', 'Aa31LG5G1100' => 'aar', 'Aa31LG6G4740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2265' => 'aag', 'Actinidia07998' => 'ach', 'Actinidia11266' => 'ach', 'Actinidia12682' => 'ach', 'Actinidia26479' => 'ach', 'Actinidia31406' => 'ach', 'Actinidia32437' => 'ach', 'Actinidia38862' => 'ach', 'Ah.05g174230' => 'amhyb', 'Ah.05g179070' => 'amhyb', 'Ah.05g179090' => 'amhyb', 'Ah.12g059950' => 'amhyb', 'AL3G20480' => 'aly', 'AL4G44520' => 'aly', 'AL5G43110' => 'aly', 'AL6G13890' => 'aly', 'AL6G52620' => 'aly', 'AL7G30830' => 'aly', 'Aqoxy1G00899' => 'aox', 'Aqoxy5G04333' => 'aox', 'Aqoxy7G00641' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3IZ0NN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4EF6AW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W9P8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79GA3M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C43NQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFCU6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G95YVJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCHK29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LU1UG8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX91RN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGB4B1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8DA0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9H7JI' => 'arhy', 'AT3G09320' => 'ath', 'AT3G60800' => 'ath', 'AT4G00840' => 'ath', 'AT4G22750' => 'ath', 'AT5G04270' => 'ath', 'ATR0090G003' => 'atr', 'ATR0559G349' => 'atr', 'ATR0680G261' => 'atr', 'ATR0810G048' => 'atr', 'Atru.chr12.831' => 'acertr', 'Atru.chr5.303' => 'acertr', 'Atru.chr5.748' => 'acertr', 'Atru.chr8.1999' => 'acertr', 'Atru.chr9.1436' => 'acertr', 'AUR62004211' => 'cqu', 'AUR62004548' => 'cqu', 'AUR62013637' => 'cqu', 'AUR62022662' => 'cqu', 'AUR62025777' => 'cqu', 'AUR62042386' => 'cqu', 'BcaB01g02310' => 'bca', 'BcaB01g06062' => 'bca', 'BcaB02g08975' => 'bca', 'BcaB02g08980' => 'bca', 'BcaC01g04228' => 'bca', 'BcaC01g06830' => 'bca', 'BcaC02g10186' => 'bca', 'BcaC02g12214' => 'bca', 'BcaC04g24101' => 'bca', 'BcaC05g29520' => 'bca', 'BcaC05g29661' => 'bca', 'BcaC06g32130' => 'bca', 'BcaC06g32131' => 'bca', 'BcaC07g40601' => 'bca', 'BcaC07g42641' => 'bca', 'BcaNung01038' => 'bca', 'BcaNung01676' => 'bca', 'BcaNung02480' => 'bca', 'BcaNung07376' => 'bca', 'BolC3t16146H' => 'bol', 'BolC3t16637H' => 'bol', 'BolC4t22257H' => 'bol', 'BolC4t24728H' => 'bol', 'BolC5t34517H' => 'bol', 'BolC7t45703H' => 'bol', 'BolC8t51166H' => 'bol', 'BolC9t53038H' => 'bol', 'BolC9t60000H' => 'bol', 'BraA01t01345Z' => 'bra', 'BraA01t01346Z' => 'bra', 'BraA01t01348Z' => 'bra', 'BraA03t12347Z' => 'bra', 'BraA03t12775Z' => 'bra', 'BraA03t14439Z' => 'bra', 'BraA04t15860Z' => 'bra', 'BraA05t19511Z' => 'bra', 'BraA05t22746Z' => 'bra', 'BraA09t35767Z' => 'bra', 'BraA09t40732Z' => 'bra', 'BraA10t45233Z' => 'bra', 'C03p38720' => 'bna', 'C03p43680' => 'bna', 'C04p06350' => 'bna', 'C04p31800' => 'bna', 'C05p58680' => 'bna', 'C07p52110' => 'bna', 'C08p35760' => 'bna', 'C09p01050' => 'bna', 'C09p72600' => 'bna', 'CAN.G106.2' => 'can', 'CAN.G1482.1' => 'can', 'CAN.G324.12' => 'can', 'CAN.G388.20' => 'can', 'CAN.G412.7' => 'can', 'CAN.G694.32' => 'can', 'CAN.G92.12' => 'can', 'CANSAT11G2353' => 'cansat', 'CANSAT21G1398' => 'cansat', 'CANSAT56G2456' => 'cansat', 'CANSAT56G3031' => 'cansat', 'CANSAT56G4539' => 'cansat', 'CARHR083680' => 'chi', 'CARHR171190' => 'chi', 'CARHR209010' => 'chi', 'CARHR229680' => 'chi', 'CARHR249490' => 'chi', 'Carub.0003s0844' => 'cru', 'Carub.0005s2755' => 'cru', 'Carub.0006s0322' => 'cru', 'Carub.0006s3586' => 'cru', 'Carub.0007s1855' => 'cru', 'Ca_07808_v3' => 'car', 'Ca_09535_v3' => 'car', 'Ca_10548_v3' => 'car', 'Ca_19913_v3' => 'car', 'Ca_19916_v3' => 'car', 'Ca_19975_v3' => 'car', 'CBR_g22876' => 'cbr', 'CBR_g22879' => 'cbr', 'CBR_g38491' => 'cbr', 'CBR_g54185' => 'cbr', 'CBR_g54190' => 'cbr', 'Cc02_g11020' => 'ccan', 'Cc02_g23920' => 'ccan', 'Cc02_g39860' => 'ccan', 'Cc02_g39870' => 'ccan', 'Cc03_g06760' => 'ccan', 'Cc06_g02450' => 'ccan', 'Cc09_g09450' => 'ccan', 'CDE02G1959' => 'cde', 'CDE04G0600' => 'cde', 'CDE07G1996' => 'cde', 'CDE07G2078' => 'cde', 'CDE11G0611' => 'cde', 'Cfa001683' => 'cfa', 'Cfa001734' => 'cfa', 'Cfa001737' => 'cfa', 'Cfa003751' => 'cfa', 'Cfa012019' => 'cfa', 'Cfa017353' => 'cfa', 'Cfa017732' => 'cfa', 'Cfa022464' => 'cfa', 'Ciclev10012400m.g' => 'ccl', 'Ciclev10021242m.g' => 'ccl', 'Ciclev10021302m.g' => 'ccl', 'Ciclev10021463m.g' => 'ccl', 'Ciclev10032359m.g' => 'ccl', 'CiPaw.01G081000' => 'cil', 'CiPaw.01G262500' => 'cil', 'CiPaw.01G269800' => 'cil', 'CiPaw.02G168400' => 'cil', 'CiPaw.05G119500' => 'cil', 'CiPaw.11G147300' => 'cil', 'ClCG01G003630' => 'cla', 'ClCG05G000510' => 'cla', 'ClCG05G002300' => 'cla', 'ClCG08G007650' => 'cla', 'ClCG10G021250' => 'cla', 'COL.COLO4_06218' => 'col', 'COL.COLO4_12538' => 'col', 'COL.COLO4_14775' => 'col', 'COL.COLO4_23875' => 'col', 'Cpa.g.sc141.16' => 'cpa', 'Cpa.g.sc169.16' => 'cpa', 'Cpa.g.sc244.4' => 'cpa', 'Cpa.g.sc244.5' => 'cpa', 'Cpa.g.sc29.87' => 'cpa', 'Cpa.g.sc53.115' => 'cpa', 'Cre03.g207502' => 'cre', 'Cre06.g277000' => 'cre', 'Cre09.g394050' => 'cre', 'CsaV3_3G007680' => 'csa', 'CsaV3_3G009710' => 'csa', 'CsaV3_3G034790' => 'csa', 'CsaV3_5G003750' => 'csa', 'CsaV3_6G036620' => 'csa', 'CSS0002288' => 'camsi', 'CSS0011250' => 'camsi', 'CSS0021619' => 'camsi', 'CSS0046701' => 'camsi', 'DCAR_006420' => 'dca', 'DCAR_006865' => 'dca', 'DCAR_008558' => 'dca', 'DCAR_028754' => 'dca', 'DCAR_028755' => 'dca', 'Dinv31218' => 'din', 'Dinv32371' => 'din', 'Dinv34250' => 'din', 'Dinv37156' => 'din', 'Dinv43704' => 'din', 'Duzib093G1811' => 'dzi', 'Duzib106G1622' => 'dzi', 'Duzib114G0504' => 'dzi', 'Duzib128G0338' => 'dzi', 'Duzib128G1577' => 'dzi', 'Duzib133G0104' => 'dzi', 'Duzib133G1080' => 'dzi', 'Duzib138G0324' => 'dzi', 'Duzib138G0394' => 'dzi', 'Duzib205G0122' => 'dzi', 'Duzib268G1020' => 'dzi', 'Duzib268G1359' => 'dzi', 'ECA232G3929' => 'eca', 'ECA236G2210' => 'eca', 'ECA236G2287' => 'eca', 'ECA240G4568' => 'eca', 'ECA247G0894' => 'eca', 'EL10Ac1g00200' => 'bvu', 'EL10Ac1g00886' => 'bvu', 'EL10As1g23091' => 'bvu', 'EL10As1g23092' => 'bvu', 'Eucgr.A01284' => 'egr', 'Eucgr.A01285' => 'egr', 'Eucgr.D02456' => 'egr', 'Eucgr.E00018' => 'egr', 'Eucgr.E01439' => 'egr', 'Eucgr.G02859' => 'egr', 'FAN01G0168' => 'fan', 'FAN01G0453' => 'fan', 'FAN01G2761' => 'fan', 'FAN02G1239' => 'fan', 'FAN03G0645' => 'fan', 'FAN03G2707' => 'fan', 'FAN03G2978' => 'fan', 'FAN04G0227' => 'fan', 'FAN06G0091' => 'fan', 'FAN06G1418' => 'fan', 'FAN06G1512' => 'fan', 'FAN06G1986' => 'fan', 'FAN06G2905' => 'fan', 'FAN06G4325' => 'fan', 'FAN08G0033' => 'fan', 'FAN09G0642' => 'fan', 'FAN10G1763' => 'fan', 'FAN10G2026' => 'fan', 'FAN10G2513' => 'fan', 'FAN10G3402' => 'fan', 'FAN10G3564' => 'fan', 'FAN10G3987' => 'fan', 'FAN13G1490' => 'fan', 'FAN14G5857' => 'fan', 'FAN18G1188' => 'fan', 'FvH4_5g00750' => 'fve', 'FvH4_6g13410' => 'fve', 'FvH4_7g11740' => 'fve', 'FvH4_7g17410' => 'fve', 'FvH4_7g18860' => 'fve', 'Glyma.01G099100' => 'gma', 'Glyma.01G142300' => 'gma', 'Glyma.03G025500' => 'gma', 'Glyma.03G069700' => 'gma', 'Glyma.03G260000' => 'gma', 'Glyma.09G269800' => 'gma', 'Glyma.10G208700' => 'gma', 'Glyma.18G220400' => 'gma', 'Glyma.20G182000' => 'gma', 'Gohir.A01G221726' => 'ghi', 'Gohir.A07G134600' => 'ghi', 'Gohir.A07G146000' => 'ghi', 'Gohir.A08G173900' => 'ghi', 'Gohir.A09G194900' => 'ghi', 'Gohir.A10G204100' => 'ghi', 'Gohir.A11G080600' => 'ghi', 'Gohir.A11G327500' => 'ghi', 'Gohir.A12G101800' => 'ghi', 'Gohir.D01G211200' => 'ghi', 'Gohir.D07G139200' => 'ghi', 'Gohir.D07G152100' => 'ghi', 'Gohir.D08G192600' => 'ghi', 'Gohir.D09G189200' => 'ghi', 'Gohir.D10G212000' => 'ghi', 'Gohir.D11G085200' => 'ghi', 'Gohir.D11G346400' => 'ghi', 'Gohir.D12G104800' => 'ghi', 'Gorai.001G151300' => 'gra', 'Gorai.001G174100' => 'gra', 'Gorai.002G257000' => 'gra', 'Gorai.004G202600' => 'gra', 'Gorai.007G090900' => 'gra', 'Gorai.007G376700' => 'gra', 'Gorai.008G114100' => 'gra', 'Gorai.011G237900' => 'gra', 'GSVIVG01005450001' => 'vvi', 'GSVIVG01016232001' => 'vvi', 'GSVIVG01026157001' => 'vvi', 'GSVIVG01027419001' => 'vvi', 'GSVIVG01027631001' => 'vvi', 'GSVIVG01034143001' => 'vvi', 'HanXRQChr03g0093921' => 'han', 'HanXRQChr04g0120001' => 'han', 'HanXRQChr04g0122561' => 'han', 'HanXRQChr09g0246851' => 'han', 'HanXRQChr10g0293311' => 'han', 'HanXRQChr13g0425231' => 'han', 'HanXRQChr16g0532571' => 'han', 'Haze_09050' => 'cav', 'Haze_15715' => 'cav', 'Haze_15716' => 'cav', 'Haze_16803' => 'cav', 'Haze_16850' => 'cav', 'Hma1.2p1_0301F.1_g118655' => 'hma', 'Hma1.2p1_0309F.1_g120590' => 'hma', 'Hma1.2p1_0936F.1_g238900' => 'hma', 'Hma1.2p1_3552F.1_g336740' => 'hma', 'HPP92_003520' => 'vpl', 'HPP92_006628' => 'vpl', 'HPP92_006645' => 'vpl', 'HPP92_014669' => 'vpl', 'HPP92_015077' => 'vpl', 'Hund16742' => 'sun', 'Hund17022' => 'sun', 'Lalb_Chr02g0152131' => 'lal', 'Lalb_Chr05g0225371' => 'lal', 'Lalb_Chr07g0189841' => 'lal', 'Lalb_Chr07g0192961' => 'lal', 'Lalb_Chr12g0208221' => 'lal', 'Lalb_Chr13g0291211' => 'lal', 'Lalb_Chr13g0291781' => 'lal', 'Lalb_Chr18g0044651' => 'lal', 'Lalb_Chr21g0313731' => 'lal', 'Lj1g0022533' => 'lja', 'Lj2A18T50' => 'lonja', 'Lj2A92G93' => 'lonja', 'Lj3A965T73' => 'lonja', 'Lj3g0000673' => 'lja', 'Lj3g0002666' => 'lja', 'Lj4g0016985' => 'lja', 'Lj5g0003625' => 'lja', 'Lj7A529G36' => 'lonja', 'Lj9A569T49' => 'lonja', 'Lj9A604T63' => 'lonja', 'Lsat_1_v5_gn_3_132060' => 'lsa', 'Lsat_1_v5_gn_4_68941' => 'lsa', 'Lsat_1_v5_gn_5_95580' => 'lsa', 'Lsat_1_v5_gn_7_161' => 'lsa', 'Lsat_1_v5_gn_7_7041' => 'lsa', 'Lsat_1_v5_gn_9_33481' => 'lsa', 'Lsat_1_v5_gn_9_68260' => 'lsa', 'Manes.01G073100' => 'mes', 'Manes.01G266300' => 'mes', 'Manes.02G033300' => 'mes', 'Manes.05G017900' => 'mes', 'Manes.05G046100' => 'mes', 'Manes.08G080900' => 'mes', 'Manes.10G049400' => 'mes', 'Mapoly0009s0186' => 'mpo', 'Mapoly0036s0118' => 'mpo', 'Mapoly0101s0046' => 'mpo', 'MBI04_g30218_MAGBIO' => 'mbi', 'MBI04_g35564_MAGBIO' => 'mbi', 'MBI12_g34011_MAGBIO' => 'mbi', 'MBI14_g04655_MAGBIO' => 'mbi', 'MCO07G653' => 'mco', 'MCO10G173' => 'mco', 'MD01G1087100' => 'mdo', 'MD01G1104200' => 'mdo', 'MD02G1205100' => 'mdo', 'MD04G1079200' => 'mdo', 'MD04G1131400' => 'mdo', 'MD07G1121600' => 'mdo', 'MD07G1157300' => 'mdo', 'MD07G1171000' => 'mdo', 'MD12G1144500' => 'mdo', 'Medtr1g094610' => 'mtr', 'Medtr4g021795' => 'mtr', 'Medtr4g023760' => 'mtr', 'Medtr7g118050' => 'mtr', 'MELO3C005582.2' => 'cme', 'MELO3C005989.2' => 'cme', 'MELO3C006192.2' => 'cme', 'MELO3C009248.2' => 'cme', 'MELO3C019817.2' => 'cme', 'Migut.B01625' => 'egut', 'Migut.B01915' => 'egut', 'Migut.F01721' => 'egut', 'Migut.J00314' => 'egut', 'MSTRG.20742' => 'ama', 'MSTRG.8134' => 'ama', 'Nitab4.5_0000096g0010' => 'nta', 'Nitab4.5_0000202g0030' => 'nta', 'Nitab4.5_0000216g0370' => 'nta', 'Nitab4.5_0000457g0230' => 'nta', 'Nitab4.5_0001702g0170' => 'nta', 'Nitab4.5_0003607g0010' => 'nta', 'Nitab4.5_0004917g0020' => 'nta', 'Nitab4.5_0007059g0010' => 'nta', 'Nitab4.5_0007184g0010' => 'nta', 'Nitab4.5_0007346g0020' => 'nta', 'Nn1g00410' => 'nnu', 'Nn1g01252' => 'nnu', 'Nn2g11168' => 'nnu', 'Nn2g13403' => 'nnu', 'Nn2g13760' => 'nnu', 'Nn4g26380' => 'nnu', 'Oeu000806.2' => 'oeu', 'Oeu005788.1' => 'oeu', 'Oeu006900.3' => 'oeu', 'Oeu007797.1' => 'oeu', 'Oeu011932.1' => 'oeu', 'Oeu022739.1' => 'oeu', 'Oeu037918.1' => 'oeu', 'Oeu055490.2' => 'oeu', 'Os01g0844400' => 'osa', 'Os02g0819100' => 'osa', 'Os03g0804300' => 'osa', 'Os05g0458000' => 'osa', 'Os07g0467800' => 'osa', 'Os12g0602200' => 'osa', 'Peaxi162Scf00013g03444' => 'pax', 'Peaxi162Scf00094g01120' => 'pax', 'Peaxi162Scf00191g01211' => 'pax', 'Peaxi162Scf00238g01110' => 'pax', 'Peaxi162Scf00330g00719' => 'pax', 'Peaxi162Scf00627g00018' => 'pax', 'PGR031G2686' => 'pgr', 'PGR042G0809' => 'pgr', 'PGR142G0193' => 'pgr', 'PGSC0003DMG400011066' => 'stu', 'PGSC0003DMG400012041' => 'stu', 'PGSC0003DMG400013678' => 'stu', 'PGSC0003DMG400023477' => 'stu', 'PGSC0003DMG400025956' => 'stu', 'PGSC0003DMG401019151' => 'stu', 'Phvul.006G116400' => 'pvu', 'Phvul.007G097300' => 'pvu', 'Phvul.010G015000' => 'pvu', 'Phvul.010G083900' => 'pvu', 'Potri.001G117100' => 'ptr', 'Potri.002G147300' => 'ptr', 'Potri.003G115600' => 'ptr', 'Potri.006G087400' => 'ptr', 'Potri.010G226100' => 'ptr', 'Potri.014G069200' => 'ptr', 'Potri.014G104000' => 'ptr', 'Potri.016G100200' => 'ptr', 'Pp3c10_20450' => 'ppa', 'Pp3c1_42400' => 'ppa', 'Pp3c3_24390' => 'ppa', 'Pp3c3_2860' => 'ppa', 'PRCOL_00003193' => 'pco', 'Prupe.2G144500' => 'ppe', 'Prupe.2G195700' => 'ppe', 'Prupe.2G209800' => 'ppe', 'Prupe.5G080000' => 'ppe', 'Prupe.6G257900' => 'ppe', 'Psat3g001160' => 'psa', 'Psat6g181880' => 'psa', 'Psat7g233720' => 'psa', 'PSO063G7587' => 'pso', 'PSO339G2145' => 'pso', 'PSO339G3369' => 'pso', 'PSO478G2747' => 'pso', 'PSO513G0140' => 'pso', 'PSO782G1614' => 'pso', 'PSO782G4889' => 'pso', 'PSO782G5485' => 'pso', 'PSO801G0241' => 'pso', 'QL07p048854' => 'qlo', 'QL08p046745' => 'qlo', 'QL08p052606' => 'qlo', 'QL08p053414' => 'qlo', 'QL08p054868' => 'qlo', 'RcHm_v2.0_Chr1g0350251' => 'rch', 'RcHm_v2.0_Chr1g0360851' => 'rch', 'RcHm_v2.0_Chr1g0362791' => 'rch', 'RcHm_v2.0_Chr3g0466281' => 'rch', 'RcHm_v2.0_Chr7g0201481' => 'rch', 'Rhsim01G0148600' => 'rsi', 'Rhsim05G0194400' => 'rsi', 'Rhsim07G0000700' => 'rsi', 'Rhsim07G0000800' => 'rsi', 'Rhsim07G0027900' => 'rsi', 'Rhsim09G0149500' => 'rsi', 'RhsimUnG0186900' => 'rsi', 'Sabra01G0089900' => 'sbr', 'Sabra02G0114700' => 'sbr', 'Sabra02G0116300' => 'sbr', 'Sabra03G0080100' => 'sbr', 'Sabra08G0024300' => 'sbr', 'Sabra10G0174300' => 'sbr', 'Sabra14G0048900' => 'sbr', 'Sabra14G0076500' => 'sbr', 'SalBow5G2513' => 'sbo', 'Sc01g0002300' => 'sci', 'Sc01g0004450' => 'sci', 'Sc06g0001680' => 'sci', 'Sc23g0003580' => 'sci', 'Sed0000913' => 'sed', 'Sed0001655' => 'sed', 'Sed0007745' => 'sed', 'Sed0010951' => 'sed', 'Sed0017599' => 'sed', 'Sed0021405' => 'sed', 'Sed0022810' => 'sed', 'SEGI_07099' => 'sgi', 'SEGI_11931' => 'sgi', 'SEGI_13187' => 'sgi', 'SEGI_29958' => 'sgi', 'SEGI_36351' => 'sgi', 'SGA_v2.0_scaffold126G33770' => 'sas', 'SGA_v2.0_scaffold153G37003' => 'sas', 'SGA_v2.0_scaffold2G01359' => 'sas', 'SGA_v2.0_scaffold5G03064' => 'sas', 'SGA_v2.0_scaffold95G28903' => 'sas', 'SHI12701' => 'shi', 'SHI26410' => 'shi', 'SHI38997' => 'shi', 'SHI53759' => 'shi', 'SHI53886' => 'shi', 'SHI54714' => 'shi', 'SMO011G0041' => 'smo', 'SMO146G0251' => 'smo', 'SMO160G0004' => 'smo', 'SMO174G0057' => 'smo', 'SMO244G0089' => 'smo', 'SMO296G0011' => 'smo', 'Solyc01g091280.3' => 'sly', 'Solyc05g047610.3' => 'sly', 'Solyc05g047640.3' => 'sly', 'Solyc05g055630.3' => 'sly', 'Solyc10g018160.2' => 'sly', 'Solyc10g084820.2' => 'sly', 'Solyc10g086565.2' => 'sly', 'Sopen01g037030' => 'spe', 'Sopen05g027920' => 'spe', 'Sopen05g034070' => 'spe', 'Sopen10g007260' => 'spe', 'Sopen10g034260' => 'spe', 'Sopen10g035950' => 'spe', 'Sp3g07710' => 'spa', 'Sp4g27420' => 'spa', 'Sp5g02450' => 'spa', 'Sp6g01280' => 'spa', 'Sp6g38480' => 'spa', 'Sp7g20780' => 'spa', 'TAR374G1413' => 'tar', 'TAR623G1777' => 'tar', 'TAR629G2370' => 'tar', 'TAR633G1759' => 'tar', 'TAR636G3387' => 'tar', 'THA.LOC104802447' => 'tha', 'THA.LOC104813916' => 'tha', 'THA.LOC104816423' => 'tha', 'THA.LOC104817246' => 'tha', 'THA.LOC104825895' => 'tha', 'Thecc.01G335200' => 'tca', 'Thecc.01G377400' => 'tca', 'Thecc.03G262200' => 'tca', 'Thecc.05G036800' => 'tca', 'Thecc.10G080500' => 'tca', 'Thecc.10G080800' => 'tca', 'Thhalv10001560m.g' => 'esa', 'Thhalv10006120m.g' => 'esa', 'Thhalv10014375m.g' => 'esa', 'Thhalv10021264m.g' => 'esa', 'Thhalv10028856m.g' => 'esa', 'TPR.G1914' => 'tpr', 'TPR.G4757' => 'tpr', 'TPR.G5595' => 'tpr', 'TWI14G0952' => 'twi', 'TWI14G1307' => 'twi', 'TWI38G2143' => 'twi', 'TWI59G0826' => 'twi', 'TWI77G0527' => 'twi', 'TWI81G0150' => 'twi', 'unitig_21.g21018' => 'ugi', 'unitig_26.g9725' => 'ugi', 'unitig_744.g24653' => 'ugi', 'unitig_749.g13778' => 'ugi', 'unitig_899.g15035' => 'ugi', 'vmacro04296' => 'vma', 'vmacro04852' => 'vma', 'vmacro13404' => 'vma', 'vmacro20169' => 'vma', 'vmacro21014' => 'vma', 'VMungo0331G0237' => 'vmu', 'VMungo0331G0706' => 'vmu', 'VMungo0331G1361' => 'vmu', 'VMungo0331G1489' => 'vmu', 'VMungo0540G1037' => 'vmu', 'VMungo0720G2487' => 'vmu', 'VMungo0720G2721' => 'vmu', 'Zm00001eb086860' => 'zma', 'Zm00001eb104760' => 'zma', 'Zm00001eb148220' => 'zma', 'Zm00001eb259030' => 'zma', 'Zm00001eb289590' => 'zma', 'Zm00001eb420150' => 'zma' ), 'gf_id' => 'HOM05D000968', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000968' ), 'data_identifier' => 'HOM05D000968', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000968', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p31690' => 'bna', 'A03p36040' => 'bna', 'A03p53730' => 'bna', 'A04p01410' => 'bna', 'A05p05420' => 'bna', 'A05p39630' => 'bna', 'A05p39640' => 'bna', 'A09p00970' => 'bna', 'A09p53060' => 'bna', 'A10p31890' => 'bna', 'Aa31LG10G15040' => 'aar', 'Aa31LG1G21090' => 'aar', 'Aa31LG1G26900' => 'aar', 'Aa31LG3G1820' => 'aar', 'Aa31LG5G1100' => 'aar', 'Aa31LG6G4740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2265' => 'aag', 'Actinidia07998' => 'ach', 'Actinidia11266' => 'ach', 'Actinidia12682' => 'ach', 'Actinidia26479' => 'ach', 'Actinidia31406' => 'ach', 'Actinidia32437' => 'ach', 'Actinidia38862' => 'ach', 'Ah.05g174230' => 'amhyb', 'Ah.05g179070' => 'amhyb', 'Ah.05g179090' => 'amhyb', 'Ah.12g059950' => 'amhyb', 'AL3G20480' => 'aly', 'AL4G44520' => 'aly', 'AL5G43110' => 'aly', 'AL6G13890' => 'aly', 'AL6G52620' => 'aly', 'AL7G30830' => 'aly', 'Aqoxy1G00899' => 'aox', 'Aqoxy5G04333' => 'aox', 'Aqoxy7G00641' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3IZ0NN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4EF6AW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W9P8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79GA3M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C43NQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFCU6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G95YVJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCHK29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LU1UG8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX91RN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGB4B1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8DA0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9H7JI' => 'arhy', 'AT3G09320' => 'ath', 'AT3G60800' => 'ath', 'AT4G00840' => 'ath', 'AT4G22750' => 'ath', 'AT5G04270' => 'ath', 'ATR0090G003' => 'atr', 'ATR0559G349' => 'atr', 'ATR0680G261' => 'atr', 'ATR0810G048' => 'atr', 'Atru.chr12.831' => 'acertr', 'Atru.chr5.303' => 'acertr', 'Atru.chr5.748' => 'acertr', 'Atru.chr8.1999' => 'acertr', 'Atru.chr9.1436' => 'acertr', 'AUR62004211' => 'cqu', 'AUR62004548' => 'cqu', 'AUR62013637' => 'cqu', 'AUR62022662' => 'cqu', 'AUR62025777' => 'cqu', 'AUR62042386' => 'cqu', 'BcaB01g02310' => 'bca', 'BcaB01g06062' => 'bca', 'BcaB02g08975' => 'bca', 'BcaB02g08980' => 'bca', 'BcaC01g04228' => 'bca', 'BcaC01g06830' => 'bca', 'BcaC02g10186' => 'bca', 'BcaC02g12214' => 'bca', 'BcaC04g24101' => 'bca', 'BcaC05g29520' => 'bca', 'BcaC05g29661' => 'bca', 'BcaC06g32130' => 'bca', 'BcaC06g32131' => 'bca', 'BcaC07g40601' => 'bca', 'BcaC07g42641' => 'bca', 'BcaNung01038' => 'bca', 'BcaNung01676' => 'bca', 'BcaNung02480' => 'bca', 'BcaNung07376' => 'bca', 'BolC3t16146H' => 'bol', 'BolC3t16637H' => 'bol', 'BolC4t22257H' => 'bol', 'BolC4t24728H' => 'bol', 'BolC5t34517H' => 'bol', 'BolC7t45703H' => 'bol', 'BolC8t51166H' => 'bol', 'BolC9t53038H' => 'bol', 'BolC9t60000H' => 'bol', 'BraA01t01345Z' => 'bra', 'BraA01t01346Z' => 'bra', 'BraA01t01348Z' => 'bra', 'BraA03t12347Z' => 'bra', 'BraA03t12775Z' => 'bra', 'BraA03t14439Z' => 'bra', 'BraA04t15860Z' => 'bra', 'BraA05t19511Z' => 'bra', 'BraA05t22746Z' => 'bra', 'BraA09t35767Z' => 'bra', 'BraA09t40732Z' => 'bra', 'BraA10t45233Z' => 'bra', 'C03p38720' => 'bna', 'C03p43680' => 'bna', 'C04p06350' => 'bna', 'C04p31800' => 'bna', 'C05p58680' => 'bna', 'C07p52110' => 'bna', 'C08p35760' => 'bna', 'C09p01050' => 'bna', 'C09p72600' => 'bna', 'CAN.G106.2' => 'can', 'CAN.G1482.1' => 'can', 'CAN.G324.12' => 'can', 'CAN.G388.20' => 'can', 'CAN.G412.7' => 'can', 'CAN.G694.32' => 'can', 'CAN.G92.12' => 'can', 'CANSAT11G2353' => 'cansat', 'CANSAT21G1398' => 'cansat', 'CANSAT56G2456' => 'cansat', 'CANSAT56G3031' => 'cansat', 'CANSAT56G4539' => 'cansat', 'CARHR083680' => 'chi', 'CARHR171190' => 'chi', 'CARHR209010' => 'chi', 'CARHR229680' => 'chi', 'CARHR249490' => 'chi', 'Carub.0003s0844' => 'cru', 'Carub.0005s2755' => 'cru', 'Carub.0006s0322' => 'cru', 'Carub.0006s3586' => 'cru', 'Carub.0007s1855' => 'cru', 'Ca_07808_v3' => 'car', 'Ca_09535_v3' => 'car', 'Ca_10548_v3' => 'car', 'Ca_19913_v3' => 'car', 'Ca_19916_v3' => 'car', 'Ca_19975_v3' => 'car', 'CBR_g22876' => 'cbr', 'CBR_g22879' => 'cbr', 'CBR_g38491' => 'cbr', 'CBR_g54185' => 'cbr', 'CBR_g54190' => 'cbr', 'Cc02_g11020' => 'ccan', 'Cc02_g23920' => 'ccan', 'Cc02_g39860' => 'ccan', 'Cc02_g39870' => 'ccan', 'Cc03_g06760' => 'ccan', 'Cc06_g02450' => 'ccan', 'Cc09_g09450' => 'ccan', 'CDE02G1959' => 'cde', 'CDE04G0600' => 'cde', 'CDE07G1996' => 'cde', 'CDE07G2078' => 'cde', 'CDE11G0611' => 'cde', 'Cfa001683' => 'cfa', 'Cfa001734' => 'cfa', 'Cfa001737' => 'cfa', 'Cfa003751' => 'cfa', 'Cfa012019' => 'cfa', 'Cfa017353' => 'cfa', 'Cfa017732' => 'cfa', 'Cfa022464' => 'cfa', 'Ciclev10012400m.g' => 'ccl', 'Ciclev10021242m.g' => 'ccl', 'Ciclev10021302m.g' => 'ccl', 'Ciclev10021463m.g' => 'ccl', 'Ciclev10032359m.g' => 'ccl', 'CiPaw.01G081000' => 'cil', 'CiPaw.01G262500' => 'cil', 'CiPaw.01G269800' => 'cil', 'CiPaw.02G168400' => 'cil', 'CiPaw.05G119500' => 'cil', 'CiPaw.11G147300' => 'cil', 'ClCG01G003630' => 'cla', 'ClCG05G000510' => 'cla', 'ClCG05G002300' => 'cla', 'ClCG08G007650' => 'cla', 'ClCG10G021250' => 'cla', 'COL.COLO4_06218' => 'col', 'COL.COLO4_12538' => 'col', 'COL.COLO4_14775' => 'col', 'COL.COLO4_23875' => 'col', 'Cpa.g.sc141.16' => 'cpa', 'Cpa.g.sc169.16' => 'cpa', 'Cpa.g.sc244.4' => 'cpa', 'Cpa.g.sc244.5' => 'cpa', 'Cpa.g.sc29.87' => 'cpa', 'Cpa.g.sc53.115' => 'cpa', 'Cre03.g207502' => 'cre', 'Cre06.g277000' => 'cre', 'Cre09.g394050' => 'cre', 'CsaV3_3G007680' => 'csa', 'CsaV3_3G009710' => 'csa', 'CsaV3_3G034790' => 'csa', 'CsaV3_5G003750' => 'csa', 'CsaV3_6G036620' => 'csa', 'CSS0002288' => 'camsi', 'CSS0011250' => 'camsi', 'CSS0021619' => 'camsi', 'CSS0046701' => 'camsi', 'DCAR_006420' => 'dca', 'DCAR_006865' => 'dca', 'DCAR_008558' => 'dca', 'DCAR_028754' => 'dca', 'DCAR_028755' => 'dca', 'Dinv31218' => 'din', 'Dinv32371' => 'din', 'Dinv34250' => 'din', 'Dinv37156' => 'din', 'Dinv43704' => 'din', 'Duzib093G1811' => 'dzi', 'Duzib106G1622' => 'dzi', 'Duzib114G0504' => 'dzi', 'Duzib128G0338' => 'dzi', 'Duzib128G1577' => 'dzi', 'Duzib133G0104' => 'dzi', 'Duzib133G1080' => 'dzi', 'Duzib138G0324' => 'dzi', 'Duzib138G0394' => 'dzi', 'Duzib205G0122' => 'dzi', 'Duzib268G1020' => 'dzi', 'Duzib268G1359' => 'dzi', 'ECA232G3929' => 'eca', 'ECA236G2210' => 'eca', 'ECA236G2287' => 'eca', 'ECA240G4568' => 'eca', 'ECA247G0894' => 'eca', 'EL10Ac1g00200' => 'bvu', 'EL10Ac1g00886' => 'bvu', 'EL10As1g23091' => 'bvu', 'EL10As1g23092' => 'bvu', 'Eucgr.A01284' => 'egr', 'Eucgr.A01285' => 'egr', 'Eucgr.D02456' => 'egr', 'Eucgr.E00018' => 'egr', 'Eucgr.E01439' => 'egr', 'Eucgr.G02859' => 'egr', 'FAN01G0168' => 'fan', 'FAN01G0453' => 'fan', 'FAN01G2761' => 'fan', 'FAN02G1239' => 'fan', 'FAN03G0645' => 'fan', 'FAN03G2707' => 'fan', 'FAN03G2978' => 'fan', 'FAN04G0227' => 'fan', 'FAN06G0091' => 'fan', 'FAN06G1418' => 'fan', 'FAN06G1512' => 'fan', 'FAN06G1986' => 'fan', 'FAN06G2905' => 'fan', 'FAN06G4325' => 'fan', 'FAN08G0033' => 'fan', 'FAN09G0642' => 'fan', 'FAN10G1763' => 'fan', 'FAN10G2026' => 'fan', 'FAN10G2513' => 'fan', 'FAN10G3402' => 'fan', 'FAN10G3564' => 'fan', 'FAN10G3987' => 'fan', 'FAN13G1490' => 'fan', 'FAN14G5857' => 'fan', 'FAN18G1188' => 'fan', 'FvH4_5g00750' => 'fve', 'FvH4_6g13410' => 'fve', 'FvH4_7g11740' => 'fve', 'FvH4_7g17410' => 'fve', 'FvH4_7g18860' => 'fve', 'Glyma.01G099100' => 'gma', 'Glyma.01G142300' => 'gma', 'Glyma.03G025500' => 'gma', 'Glyma.03G069700' => 'gma', 'Glyma.03G260000' => 'gma', 'Glyma.09G269800' => 'gma', 'Glyma.10G208700' => 'gma', 'Glyma.18G220400' => 'gma', 'Glyma.20G182000' => 'gma', 'Gohir.A01G221726' => 'ghi', 'Gohir.A07G134600' => 'ghi', 'Gohir.A07G146000' => 'ghi', 'Gohir.A08G173900' => 'ghi', 'Gohir.A09G194900' => 'ghi', 'Gohir.A10G204100' => 'ghi', 'Gohir.A11G080600' => 'ghi', 'Gohir.A11G327500' => 'ghi', 'Gohir.A12G101800' => 'ghi', 'Gohir.D01G211200' => 'ghi', 'Gohir.D07G139200' => 'ghi', 'Gohir.D07G152100' => 'ghi', 'Gohir.D08G192600' => 'ghi', 'Gohir.D09G189200' => 'ghi', 'Gohir.D10G212000' => 'ghi', 'Gohir.D11G085200' => 'ghi', 'Gohir.D11G346400' => 'ghi', 'Gohir.D12G104800' => 'ghi', 'Gorai.001G151300' => 'gra', 'Gorai.001G174100' => 'gra', 'Gorai.002G257000' => 'gra', 'Gorai.004G202600' => 'gra', 'Gorai.007G090900' => 'gra', 'Gorai.007G376700' => 'gra', 'Gorai.008G114100' => 'gra', 'Gorai.011G237900' => 'gra', 'GSVIVG01005450001' => 'vvi', 'GSVIVG01016232001' => 'vvi', 'GSVIVG01026157001' => 'vvi', 'GSVIVG01027419001' => 'vvi', 'GSVIVG01027631001' => 'vvi', 'GSVIVG01034143001' => 'vvi', 'HanXRQChr03g0093921' => 'han', 'HanXRQChr04g0120001' => 'han', 'HanXRQChr04g0122561' => 'han', 'HanXRQChr09g0246851' => 'han', 'HanXRQChr10g0293311' => 'han', 'HanXRQChr13g0425231' => 'han', 'HanXRQChr16g0532571' => 'han', 'Haze_09050' => 'cav', 'Haze_15715' => 'cav', 'Haze_15716' => 'cav', 'Haze_16803' => 'cav', 'Haze_16850' => 'cav', 'Hma1.2p1_0301F.1_g118655' => 'hma', 'Hma1.2p1_0309F.1_g120590' => 'hma', 'Hma1.2p1_0936F.1_g238900' => 'hma', 'Hma1.2p1_3552F.1_g336740' => 'hma', 'HPP92_003520' => 'vpl', 'HPP92_006628' => 'vpl', 'HPP92_006645' => 'vpl', 'HPP92_014669' => 'vpl', 'HPP92_015077' => 'vpl', 'Hund16742' => 'sun', 'Hund17022' => 'sun', 'Lalb_Chr02g0152131' => 'lal', 'Lalb_Chr05g0225371' => 'lal', 'Lalb_Chr07g0189841' => 'lal', 'Lalb_Chr07g0192961' => 'lal', 'Lalb_Chr12g0208221' => 'lal', 'Lalb_Chr13g0291211' => 'lal', 'Lalb_Chr13g0291781' => 'lal', 'Lalb_Chr18g0044651' => 'lal', 'Lalb_Chr21g0313731' => 'lal', 'Lj1g0022533' => 'lja', 'Lj2A18T50' => 'lonja', 'Lj2A92G93' => 'lonja', 'Lj3A965T73' => 'lonja', 'Lj3g0000673' => 'lja', 'Lj3g0002666' => 'lja', 'Lj4g0016985' => 'lja', 'Lj5g0003625' => 'lja', 'Lj7A529G36' => 'lonja', 'Lj9A569T49' => 'lonja', 'Lj9A604T63' => 'lonja', 'Lsat_1_v5_gn_3_132060' => 'lsa', 'Lsat_1_v5_gn_4_68941' => 'lsa', 'Lsat_1_v5_gn_5_95580' => 'lsa', 'Lsat_1_v5_gn_7_161' => 'lsa', 'Lsat_1_v5_gn_7_7041' => 'lsa', 'Lsat_1_v5_gn_9_33481' => 'lsa', 'Lsat_1_v5_gn_9_68260' => 'lsa', 'Manes.01G073100' => 'mes', 'Manes.01G266300' => 'mes', 'Manes.02G033300' => 'mes', 'Manes.05G017900' => 'mes', 'Manes.05G046100' => 'mes', 'Manes.08G080900' => 'mes', 'Manes.10G049400' => 'mes', 'Mapoly0009s0186' => 'mpo', 'Mapoly0036s0118' => 'mpo', 'Mapoly0101s0046' => 'mpo', 'MBI04_g30218_MAGBIO' => 'mbi', 'MBI04_g35564_MAGBIO' => 'mbi', 'MBI12_g34011_MAGBIO' => 'mbi', 'MBI14_g04655_MAGBIO' => 'mbi', 'MCO07G653' => 'mco', 'MCO10G173' => 'mco', 'MD01G1087100' => 'mdo', 'MD01G1104200' => 'mdo', 'MD02G1205100' => 'mdo', 'MD04G1079200' => 'mdo', 'MD04G1131400' => 'mdo', 'MD07G1121600' => 'mdo', 'MD07G1157300' => 'mdo', 'MD07G1171000' => 'mdo', 'MD12G1144500' => 'mdo', 'Medtr1g094610' => 'mtr', 'Medtr4g021795' => 'mtr', 'Medtr4g023760' => 'mtr', 'Medtr7g118050' => 'mtr', 'MELO3C005582.2' => 'cme', 'MELO3C005989.2' => 'cme', 'MELO3C006192.2' => 'cme', 'MELO3C009248.2' => 'cme', 'MELO3C019817.2' => 'cme', 'Migut.B01625' => 'egut', 'Migut.B01915' => 'egut', 'Migut.F01721' => 'egut', 'Migut.J00314' => 'egut', 'MSTRG.20742' => 'ama', 'MSTRG.8134' => 'ama', 'Nitab4.5_0000096g0010' => 'nta', 'Nitab4.5_0000202g0030' => 'nta', 'Nitab4.5_0000216g0370' => 'nta', 'Nitab4.5_0000457g0230' => 'nta', 'Nitab4.5_0001702g0170' => 'nta', 'Nitab4.5_0003607g0010' => 'nta', 'Nitab4.5_0004917g0020' => 'nta', 'Nitab4.5_0007059g0010' => 'nta', 'Nitab4.5_0007184g0010' => 'nta', 'Nitab4.5_0007346g0020' => 'nta', 'Nn1g00410' => 'nnu', 'Nn1g01252' => 'nnu', 'Nn2g11168' => 'nnu', 'Nn2g13403' => 'nnu', 'Nn2g13760' => 'nnu', 'Nn4g26380' => 'nnu', 'Oeu000806.2' => 'oeu', 'Oeu005788.1' => 'oeu', 'Oeu006900.3' => 'oeu', 'Oeu007797.1' => 'oeu', 'Oeu011932.1' => 'oeu', 'Oeu022739.1' => 'oeu', 'Oeu037918.1' => 'oeu', 'Oeu055490.2' => 'oeu', 'Os01g0844400' => 'osa', 'Os02g0819100' => 'osa', 'Os03g0804300' => 'osa', 'Os05g0458000' => 'osa', 'Os07g0467800' => 'osa', 'Os12g0602200' => 'osa', 'Peaxi162Scf00013g03444' => 'pax', 'Peaxi162Scf00094g01120' => 'pax', 'Peaxi162Scf00191g01211' => 'pax', 'Peaxi162Scf00238g01110' => 'pax', 'Peaxi162Scf00330g00719' => 'pax', 'Peaxi162Scf00627g00018' => 'pax', 'PGR031G2686' => 'pgr', 'PGR042G0809' => 'pgr', 'PGR142G0193' => 'pgr', 'PGSC0003DMG400011066' => 'stu', 'PGSC0003DMG400012041' => 'stu', 'PGSC0003DMG400013678' => 'stu', 'PGSC0003DMG400023477' => 'stu', 'PGSC0003DMG400025956' => 'stu', 'PGSC0003DMG401019151' => 'stu', 'Phvul.006G116400' => 'pvu', 'Phvul.007G097300' => 'pvu', 'Phvul.010G015000' => 'pvu', 'Phvul.010G083900' => 'pvu', 'Potri.001G117100' => 'ptr', 'Potri.002G147300' => 'ptr', 'Potri.003G115600' => 'ptr', 'Potri.006G087400' => 'ptr', 'Potri.010G226100' => 'ptr', 'Potri.014G069200' => 'ptr', 'Potri.014G104000' => 'ptr', 'Potri.016G100200' => 'ptr', 'Pp3c10_20450' => 'ppa', 'Pp3c1_42400' => 'ppa', 'Pp3c3_24390' => 'ppa', 'Pp3c3_2860' => 'ppa', 'PRCOL_00003193' => 'pco', 'Prupe.2G144500' => 'ppe', 'Prupe.2G195700' => 'ppe', 'Prupe.2G209800' => 'ppe', 'Prupe.5G080000' => 'ppe', 'Prupe.6G257900' => 'ppe', 'Psat3g001160' => 'psa', 'Psat6g181880' => 'psa', 'Psat7g233720' => 'psa', 'PSO063G7587' => 'pso', 'PSO339G2145' => 'pso', 'PSO339G3369' => 'pso', 'PSO478G2747' => 'pso', 'PSO513G0140' => 'pso', 'PSO782G1614' => 'pso', 'PSO782G4889' => 'pso', 'PSO782G5485' => 'pso', 'PSO801G0241' => 'pso', 'QL07p048854' => 'qlo', 'QL08p046745' => 'qlo', 'QL08p052606' => 'qlo', 'QL08p053414' => 'qlo', 'QL08p054868' => 'qlo', 'RcHm_v2.0_Chr1g0350251' => 'rch', 'RcHm_v2.0_Chr1g0360851' => 'rch', 'RcHm_v2.0_Chr1g0362791' => 'rch', 'RcHm_v2.0_Chr3g0466281' => 'rch', 'RcHm_v2.0_Chr7g0201481' => 'rch', 'Rhsim01G0148600' => 'rsi', 'Rhsim05G0194400' => 'rsi', 'Rhsim07G0000700' => 'rsi', 'Rhsim07G0000800' => 'rsi', 'Rhsim07G0027900' => 'rsi', 'Rhsim09G0149500' => 'rsi', 'RhsimUnG0186900' => 'rsi', 'Sabra01G0089900' => 'sbr', 'Sabra02G0114700' => 'sbr', 'Sabra02G0116300' => 'sbr', 'Sabra03G0080100' => 'sbr', 'Sabra08G0024300' => 'sbr', 'Sabra10G0174300' => 'sbr', 'Sabra14G0048900' => 'sbr', 'Sabra14G0076500' => 'sbr', 'SalBow5G2513' => 'sbo', 'Sc01g0002300' => 'sci', 'Sc01g0004450' => 'sci', 'Sc06g0001680' => 'sci', 'Sc23g0003580' => 'sci', 'Sed0000913' => 'sed', 'Sed0001655' => 'sed', 'Sed0007745' => 'sed', 'Sed0010951' => 'sed', 'Sed0017599' => 'sed', 'Sed0021405' => 'sed', 'Sed0022810' => 'sed', 'SEGI_07099' => 'sgi', 'SEGI_11931' => 'sgi', 'SEGI_13187' => 'sgi', 'SEGI_29958' => 'sgi', 'SEGI_36351' => 'sgi', 'SGA_v2.0_scaffold126G33770' => 'sas', 'SGA_v2.0_scaffold153G37003' => 'sas', 'SGA_v2.0_scaffold2G01359' => 'sas', 'SGA_v2.0_scaffold5G03064' => 'sas', 'SGA_v2.0_scaffold95G28903' => 'sas', 'SHI12701' => 'shi', 'SHI26410' => 'shi', 'SHI38997' => 'shi', 'SHI53759' => 'shi', 'SHI53886' => 'shi', 'SHI54714' => 'shi', 'SMO011G0041' => 'smo', 'SMO146G0251' => 'smo', 'SMO160G0004' => 'smo', 'SMO174G0057' => 'smo', 'SMO244G0089' => 'smo', 'SMO296G0011' => 'smo', 'Solyc01g091280.3' => 'sly', 'Solyc05g047610.3' => 'sly', 'Solyc05g047640.3' => 'sly', 'Solyc05g055630.3' => 'sly', 'Solyc10g018160.2' => 'sly', 'Solyc10g084820.2' => 'sly', 'Solyc10g086565.2' => 'sly', 'Sopen01g037030' => 'spe', 'Sopen05g027920' => 'spe', 'Sopen05g034070' => 'spe', 'Sopen10g007260' => 'spe', 'Sopen10g034260' => 'spe', 'Sopen10g035950' => 'spe', 'Sp3g07710' => 'spa', 'Sp4g27420' => 'spa', 'Sp5g02450' => 'spa', 'Sp6g01280' => 'spa', 'Sp6g38480' => 'spa', 'Sp7g20780' => 'spa', 'TAR374G1413' => 'tar', 'TAR623G1777' => 'tar', 'TAR629G2370' => 'tar', 'TAR633G1759' => 'tar', 'TAR636G3387' => 'tar', 'THA.LOC104802447' => 'tha', 'THA.LOC104813916' => 'tha', 'THA.LOC104816423' => 'tha', 'THA.LOC104817246' => 'tha', 'THA.LOC104825895' => 'tha', 'Thecc.01G335200' => 'tca', 'Thecc.01G377400' => 'tca', 'Thecc.03G262200' => 'tca', 'Thecc.05G036800' => 'tca', 'Thecc.10G080500' => 'tca', 'Thecc.10G080800' => 'tca', 'Thhalv10001560m.g' => 'esa', 'Thhalv10006120m.g' => 'esa', 'Thhalv10014375m.g' => 'esa', 'Thhalv10021264m.g' => 'esa', 'Thhalv10028856m.g' => 'esa', 'TPR.G1914' => 'tpr', 'TPR.G4757' => 'tpr', 'TPR.G5595' => 'tpr', 'TWI14G0952' => 'twi', 'TWI14G1307' => 'twi', 'TWI38G2143' => 'twi', 'TWI59G0826' => 'twi', 'TWI77G0527' => 'twi', 'TWI81G0150' => 'twi', 'unitig_21.g21018' => 'ugi', 'unitig_26.g9725' => 'ugi', 'unitig_744.g24653' => 'ugi', 'unitig_749.g13778' => 'ugi', 'unitig_899.g15035' => 'ugi', 'vmacro04296' => 'vma', 'vmacro04852' => 'vma', 'vmacro13404' => 'vma', 'vmacro20169' => 'vma', 'vmacro21014' => 'vma', 'VMungo0331G0237' => 'vmu', 'VMungo0331G0706' => 'vmu', 'VMungo0331G1361' => 'vmu', 'VMungo0331G1489' => 'vmu', 'VMungo0540G1037' => 'vmu', 'VMungo0720G2487' => 'vmu', 'VMungo0720G2721' => 'vmu', 'Zm00001eb086860' => 'zma', 'Zm00001eb104760' => 'zma', 'Zm00001eb148220' => 'zma', 'Zm00001eb259030' => 'zma', 'Zm00001eb289590' => 'zma', 'Zm00001eb420150' => 'zma' ) $gf_id = 'HOM05D000968' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000968' ) $data_identifier = 'HOM05D000968' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 19, 'bol' => (int) 9, 'bra' => (int) 12, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 5, 'ccan' => (int) 7, 'cde' => (int) 5, 'cfa' => (int) 8, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 4, 'dca' => (int) 5, 'din' => (int) 5, 'dzi' => (int) 12, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 25, 'fve' => (int) 5, 'gma' => (int) 9, 'ghi' => (int) 18, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 7, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 5, 'sun' => (int) 2, 'lal' => (int) 9, 'lja' => (int) 5, 'lonja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 9, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 2, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 3, 'stu' => (int) 6, 'pvu' => (int) 4, 'ptr' => (int) 8, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 3, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 1, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 5, 'sas' => (int) 5, 'shi' => (int) 6, 'smo' => (int) 6, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 3, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420150' $species_info = array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ) $local_species = 'sci' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000968', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p31690' => 'bna', 'A03p36040' => 'bna', 'A03p53730' => 'bna', 'A04p01410' => 'bna', 'A05p05420' => 'bna', 'A05p39630' => 'bna', 'A05p39640' => 'bna', 'A09p00970' => 'bna', 'A09p53060' => 'bna', 'A10p31890' => 'bna', 'Aa31LG10G15040' => 'aar', 'Aa31LG1G21090' => 'aar', 'Aa31LG1G26900' => 'aar', 'Aa31LG3G1820' => 'aar', 'Aa31LG5G1100' => 'aar', 'Aa31LG6G4740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2265' => 'aag', 'Actinidia07998' => 'ach', 'Actinidia11266' => 'ach', 'Actinidia12682' => 'ach', 'Actinidia26479' => 'ach', 'Actinidia31406' => 'ach', 'Actinidia32437' => 'ach', 'Actinidia38862' => 'ach', 'Ah.05g174230' => 'amhyb', 'Ah.05g179070' => 'amhyb', 'Ah.05g179090' => 'amhyb', 'Ah.12g059950' => 'amhyb', 'AL3G20480' => 'aly', 'AL4G44520' => 'aly', 'AL5G43110' => 'aly', 'AL6G13890' => 'aly', 'AL6G52620' => 'aly', 'AL7G30830' => 'aly', 'Aqoxy1G00899' => 'aox', 'Aqoxy5G04333' => 'aox', 'Aqoxy7G00641' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3IZ0NN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4EF6AW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W9P8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79GA3M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C43NQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFCU6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G95YVJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCHK29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LU1UG8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX91RN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGB4B1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8DA0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9H7JI' => 'arhy', 'AT3G09320' => 'ath', 'AT3G60800' => 'ath', 'AT4G00840' => 'ath', 'AT4G22750' => 'ath', 'AT5G04270' => 'ath', 'ATR0090G003' => 'atr', 'ATR0559G349' => 'atr', 'ATR0680G261' => 'atr', 'ATR0810G048' => 'atr', 'Atru.chr12.831' => 'acertr', 'Atru.chr5.303' => 'acertr', 'Atru.chr5.748' => 'acertr', 'Atru.chr8.1999' => 'acertr', 'Atru.chr9.1436' => 'acertr', 'AUR62004211' => 'cqu', 'AUR62004548' => 'cqu', 'AUR62013637' => 'cqu', 'AUR62022662' => 'cqu', 'AUR62025777' => 'cqu', 'AUR62042386' => 'cqu', 'BcaB01g02310' => 'bca', 'BcaB01g06062' => 'bca', 'BcaB02g08975' => 'bca', 'BcaB02g08980' => 'bca', 'BcaC01g04228' => 'bca', 'BcaC01g06830' => 'bca', 'BcaC02g10186' => 'bca', 'BcaC02g12214' => 'bca', 'BcaC04g24101' => 'bca', 'BcaC05g29520' => 'bca', 'BcaC05g29661' => 'bca', 'BcaC06g32130' => 'bca', 'BcaC06g32131' => 'bca', 'BcaC07g40601' => 'bca', 'BcaC07g42641' => 'bca', 'BcaNung01038' => 'bca', 'BcaNung01676' => 'bca', 'BcaNung02480' => 'bca', 'BcaNung07376' => 'bca', 'BolC3t16146H' => 'bol', 'BolC3t16637H' => 'bol', 'BolC4t22257H' => 'bol', 'BolC4t24728H' => 'bol', 'BolC5t34517H' => 'bol', 'BolC7t45703H' => 'bol', 'BolC8t51166H' => 'bol', 'BolC9t53038H' => 'bol', 'BolC9t60000H' => 'bol', 'BraA01t01345Z' => 'bra', 'BraA01t01346Z' => 'bra', 'BraA01t01348Z' => 'bra', 'BraA03t12347Z' => 'bra', 'BraA03t12775Z' => 'bra', 'BraA03t14439Z' => 'bra', 'BraA04t15860Z' => 'bra', 'BraA05t19511Z' => 'bra', 'BraA05t22746Z' => 'bra', 'BraA09t35767Z' => 'bra', 'BraA09t40732Z' => 'bra', 'BraA10t45233Z' => 'bra', 'C03p38720' => 'bna', 'C03p43680' => 'bna', 'C04p06350' => 'bna', 'C04p31800' => 'bna', 'C05p58680' => 'bna', 'C07p52110' => 'bna', 'C08p35760' => 'bna', 'C09p01050' => 'bna', 'C09p72600' => 'bna', 'CAN.G106.2' => 'can', 'CAN.G1482.1' => 'can', 'CAN.G324.12' => 'can', 'CAN.G388.20' => 'can', 'CAN.G412.7' => 'can', 'CAN.G694.32' => 'can', 'CAN.G92.12' => 'can', 'CANSAT11G2353' => 'cansat', 'CANSAT21G1398' => 'cansat', 'CANSAT56G2456' => 'cansat', 'CANSAT56G3031' => 'cansat', 'CANSAT56G4539' => 'cansat', 'CARHR083680' => 'chi', 'CARHR171190' => 'chi', 'CARHR209010' => 'chi', 'CARHR229680' => 'chi', 'CARHR249490' => 'chi', 'Carub.0003s0844' => 'cru', 'Carub.0005s2755' => 'cru', 'Carub.0006s0322' => 'cru', 'Carub.0006s3586' => 'cru', 'Carub.0007s1855' => 'cru', 'Ca_07808_v3' => 'car', 'Ca_09535_v3' => 'car', 'Ca_10548_v3' => 'car', 'Ca_19913_v3' => 'car', 'Ca_19916_v3' => 'car', 'Ca_19975_v3' => 'car', 'CBR_g22876' => 'cbr', 'CBR_g22879' => 'cbr', 'CBR_g38491' => 'cbr', 'CBR_g54185' => 'cbr', 'CBR_g54190' => 'cbr', 'Cc02_g11020' => 'ccan', 'Cc02_g23920' => 'ccan', 'Cc02_g39860' => 'ccan', 'Cc02_g39870' => 'ccan', 'Cc03_g06760' => 'ccan', 'Cc06_g02450' => 'ccan', 'Cc09_g09450' => 'ccan', 'CDE02G1959' => 'cde', 'CDE04G0600' => 'cde', 'CDE07G1996' => 'cde', 'CDE07G2078' => 'cde', 'CDE11G0611' => 'cde', 'Cfa001683' => 'cfa', 'Cfa001734' => 'cfa', 'Cfa001737' => 'cfa', 'Cfa003751' => 'cfa', 'Cfa012019' => 'cfa', 'Cfa017353' => 'cfa', 'Cfa017732' => 'cfa', 'Cfa022464' => 'cfa', 'Ciclev10012400m.g' => 'ccl', 'Ciclev10021242m.g' => 'ccl', 'Ciclev10021302m.g' => 'ccl', 'Ciclev10021463m.g' => 'ccl', 'Ciclev10032359m.g' => 'ccl', 'CiPaw.01G081000' => 'cil', 'CiPaw.01G262500' => 'cil', 'CiPaw.01G269800' => 'cil', 'CiPaw.02G168400' => 'cil', 'CiPaw.05G119500' => 'cil', 'CiPaw.11G147300' => 'cil', 'ClCG01G003630' => 'cla', 'ClCG05G000510' => 'cla', 'ClCG05G002300' => 'cla', 'ClCG08G007650' => 'cla', 'ClCG10G021250' => 'cla', 'COL.COLO4_06218' => 'col', 'COL.COLO4_12538' => 'col', 'COL.COLO4_14775' => 'col', 'COL.COLO4_23875' => 'col', 'Cpa.g.sc141.16' => 'cpa', 'Cpa.g.sc169.16' => 'cpa', 'Cpa.g.sc244.4' => 'cpa', 'Cpa.g.sc244.5' => 'cpa', 'Cpa.g.sc29.87' => 'cpa', 'Cpa.g.sc53.115' => 'cpa', 'Cre03.g207502' => 'cre', 'Cre06.g277000' => 'cre', 'Cre09.g394050' => 'cre', 'CsaV3_3G007680' => 'csa', 'CsaV3_3G009710' => 'csa', 'CsaV3_3G034790' => 'csa', 'CsaV3_5G003750' => 'csa', 'CsaV3_6G036620' => 'csa', 'CSS0002288' => 'camsi', 'CSS0011250' => 'camsi', 'CSS0021619' => 'camsi', 'CSS0046701' => 'camsi', 'DCAR_006420' => 'dca', 'DCAR_006865' => 'dca', 'DCAR_008558' => 'dca', 'DCAR_028754' => 'dca', 'DCAR_028755' => 'dca', 'Dinv31218' => 'din', 'Dinv32371' => 'din', 'Dinv34250' => 'din', 'Dinv37156' => 'din', 'Dinv43704' => 'din', 'Duzib093G1811' => 'dzi', 'Duzib106G1622' => 'dzi', 'Duzib114G0504' => 'dzi', 'Duzib128G0338' => 'dzi', 'Duzib128G1577' => 'dzi', 'Duzib133G0104' => 'dzi', 'Duzib133G1080' => 'dzi', 'Duzib138G0324' => 'dzi', 'Duzib138G0394' => 'dzi', 'Duzib205G0122' => 'dzi', 'Duzib268G1020' => 'dzi', 'Duzib268G1359' => 'dzi', 'ECA232G3929' => 'eca', 'ECA236G2210' => 'eca', 'ECA236G2287' => 'eca', 'ECA240G4568' => 'eca', 'ECA247G0894' => 'eca', 'EL10Ac1g00200' => 'bvu', 'EL10Ac1g00886' => 'bvu', 'EL10As1g23091' => 'bvu', 'EL10As1g23092' => 'bvu', 'Eucgr.A01284' => 'egr', 'Eucgr.A01285' => 'egr', 'Eucgr.D02456' => 'egr', 'Eucgr.E00018' => 'egr', 'Eucgr.E01439' => 'egr', 'Eucgr.G02859' => 'egr', 'FAN01G0168' => 'fan', 'FAN01G0453' => 'fan', 'FAN01G2761' => 'fan', 'FAN02G1239' => 'fan', 'FAN03G0645' => 'fan', 'FAN03G2707' => 'fan', 'FAN03G2978' => 'fan', 'FAN04G0227' => 'fan', 'FAN06G0091' => 'fan', 'FAN06G1418' => 'fan', 'FAN06G1512' => 'fan', 'FAN06G1986' => 'fan', 'FAN06G2905' => 'fan', 'FAN06G4325' => 'fan', 'FAN08G0033' => 'fan', 'FAN09G0642' => 'fan', 'FAN10G1763' => 'fan', 'FAN10G2026' => 'fan', 'FAN10G2513' => 'fan', 'FAN10G3402' => 'fan', 'FAN10G3564' => 'fan', 'FAN10G3987' => 'fan', 'FAN13G1490' => 'fan', 'FAN14G5857' => 'fan', 'FAN18G1188' => 'fan', 'FvH4_5g00750' => 'fve', 'FvH4_6g13410' => 'fve', 'FvH4_7g11740' => 'fve', 'FvH4_7g17410' => 'fve', 'FvH4_7g18860' => 'fve', 'Glyma.01G099100' => 'gma', 'Glyma.01G142300' => 'gma', 'Glyma.03G025500' => 'gma', 'Glyma.03G069700' => 'gma', 'Glyma.03G260000' => 'gma', 'Glyma.09G269800' => 'gma', 'Glyma.10G208700' => 'gma', 'Glyma.18G220400' => 'gma', 'Glyma.20G182000' => 'gma', 'Gohir.A01G221726' => 'ghi', 'Gohir.A07G134600' => 'ghi', 'Gohir.A07G146000' => 'ghi', 'Gohir.A08G173900' => 'ghi', 'Gohir.A09G194900' => 'ghi', 'Gohir.A10G204100' => 'ghi', 'Gohir.A11G080600' => 'ghi', 'Gohir.A11G327500' => 'ghi', 'Gohir.A12G101800' => 'ghi', 'Gohir.D01G211200' => 'ghi', 'Gohir.D07G139200' => 'ghi', 'Gohir.D07G152100' => 'ghi', 'Gohir.D08G192600' => 'ghi', 'Gohir.D09G189200' => 'ghi', 'Gohir.D10G212000' => 'ghi', 'Gohir.D11G085200' => 'ghi', 'Gohir.D11G346400' => 'ghi', 'Gohir.D12G104800' => 'ghi', 'Gorai.001G151300' => 'gra', 'Gorai.001G174100' => 'gra', 'Gorai.002G257000' => 'gra', 'Gorai.004G202600' => 'gra', 'Gorai.007G090900' => 'gra', 'Gorai.007G376700' => 'gra', 'Gorai.008G114100' => 'gra', 'Gorai.011G237900' => 'gra', 'GSVIVG01005450001' => 'vvi', 'GSVIVG01016232001' => 'vvi', 'GSVIVG01026157001' => 'vvi', 'GSVIVG01027419001' => 'vvi', 'GSVIVG01027631001' => 'vvi', 'GSVIVG01034143001' => 'vvi', 'HanXRQChr03g0093921' => 'han', 'HanXRQChr04g0120001' => 'han', 'HanXRQChr04g0122561' => 'han', 'HanXRQChr09g0246851' => 'han', 'HanXRQChr10g0293311' => 'han', 'HanXRQChr13g0425231' => 'han', 'HanXRQChr16g0532571' => 'han', 'Haze_09050' => 'cav', 'Haze_15715' => 'cav', 'Haze_15716' => 'cav', 'Haze_16803' => 'cav', 'Haze_16850' => 'cav', 'Hma1.2p1_0301F.1_g118655' => 'hma', 'Hma1.2p1_0309F.1_g120590' => 'hma', 'Hma1.2p1_0936F.1_g238900' => 'hma', 'Hma1.2p1_3552F.1_g336740' => 'hma', 'HPP92_003520' => 'vpl', 'HPP92_006628' => 'vpl', 'HPP92_006645' => 'vpl', 'HPP92_014669' => 'vpl', 'HPP92_015077' => 'vpl', 'Hund16742' => 'sun', 'Hund17022' => 'sun', 'Lalb_Chr02g0152131' => 'lal', 'Lalb_Chr05g0225371' => 'lal', 'Lalb_Chr07g0189841' => 'lal', 'Lalb_Chr07g0192961' => 'lal', 'Lalb_Chr12g0208221' => 'lal', 'Lalb_Chr13g0291211' => 'lal', 'Lalb_Chr13g0291781' => 'lal', 'Lalb_Chr18g0044651' => 'lal', 'Lalb_Chr21g0313731' => 'lal', 'Lj1g0022533' => 'lja', 'Lj2A18T50' => 'lonja', 'Lj2A92G93' => 'lonja', 'Lj3A965T73' => 'lonja', 'Lj3g0000673' => 'lja', 'Lj3g0002666' => 'lja', 'Lj4g0016985' => 'lja', 'Lj5g0003625' => 'lja', 'Lj7A529G36' => 'lonja', 'Lj9A569T49' => 'lonja', 'Lj9A604T63' => 'lonja', 'Lsat_1_v5_gn_3_132060' => 'lsa', 'Lsat_1_v5_gn_4_68941' => 'lsa', 'Lsat_1_v5_gn_5_95580' => 'lsa', 'Lsat_1_v5_gn_7_161' => 'lsa', 'Lsat_1_v5_gn_7_7041' => 'lsa', 'Lsat_1_v5_gn_9_33481' => 'lsa', 'Lsat_1_v5_gn_9_68260' => 'lsa', 'Manes.01G073100' => 'mes', 'Manes.01G266300' => 'mes', 'Manes.02G033300' => 'mes', 'Manes.05G017900' => 'mes', 'Manes.05G046100' => 'mes', 'Manes.08G080900' => 'mes', 'Manes.10G049400' => 'mes', 'Mapoly0009s0186' => 'mpo', 'Mapoly0036s0118' => 'mpo', 'Mapoly0101s0046' => 'mpo', 'MBI04_g30218_MAGBIO' => 'mbi', 'MBI04_g35564_MAGBIO' => 'mbi', 'MBI12_g34011_MAGBIO' => 'mbi', 'MBI14_g04655_MAGBIO' => 'mbi', 'MCO07G653' => 'mco', 'MCO10G173' => 'mco', 'MD01G1087100' => 'mdo', 'MD01G1104200' => 'mdo', 'MD02G1205100' => 'mdo', 'MD04G1079200' => 'mdo', 'MD04G1131400' => 'mdo', 'MD07G1121600' => 'mdo', 'MD07G1157300' => 'mdo', 'MD07G1171000' => 'mdo', 'MD12G1144500' => 'mdo', 'Medtr1g094610' => 'mtr', 'Medtr4g021795' => 'mtr', 'Medtr4g023760' => 'mtr', 'Medtr7g118050' => 'mtr', 'MELO3C005582.2' => 'cme', 'MELO3C005989.2' => 'cme', 'MELO3C006192.2' => 'cme', 'MELO3C009248.2' => 'cme', 'MELO3C019817.2' => 'cme', 'Migut.B01625' => 'egut', 'Migut.B01915' => 'egut', 'Migut.F01721' => 'egut', 'Migut.J00314' => 'egut', 'MSTRG.20742' => 'ama', 'MSTRG.8134' => 'ama', 'Nitab4.5_0000096g0010' => 'nta', 'Nitab4.5_0000202g0030' => 'nta', 'Nitab4.5_0000216g0370' => 'nta', 'Nitab4.5_0000457g0230' => 'nta', 'Nitab4.5_0001702g0170' => 'nta', 'Nitab4.5_0003607g0010' => 'nta', 'Nitab4.5_0004917g0020' => 'nta', 'Nitab4.5_0007059g0010' => 'nta', 'Nitab4.5_0007184g0010' => 'nta', 'Nitab4.5_0007346g0020' => 'nta', 'Nn1g00410' => 'nnu', 'Nn1g01252' => 'nnu', 'Nn2g11168' => 'nnu', 'Nn2g13403' => 'nnu', 'Nn2g13760' => 'nnu', 'Nn4g26380' => 'nnu', 'Oeu000806.2' => 'oeu', 'Oeu005788.1' => 'oeu', 'Oeu006900.3' => 'oeu', 'Oeu007797.1' => 'oeu', 'Oeu011932.1' => 'oeu', 'Oeu022739.1' => 'oeu', 'Oeu037918.1' => 'oeu', 'Oeu055490.2' => 'oeu', 'Os01g0844400' => 'osa', 'Os02g0819100' => 'osa', 'Os03g0804300' => 'osa', 'Os05g0458000' => 'osa', 'Os07g0467800' => 'osa', 'Os12g0602200' => 'osa', 'Peaxi162Scf00013g03444' => 'pax', 'Peaxi162Scf00094g01120' => 'pax', 'Peaxi162Scf00191g01211' => 'pax', 'Peaxi162Scf00238g01110' => 'pax', 'Peaxi162Scf00330g00719' => 'pax', 'Peaxi162Scf00627g00018' => 'pax', 'PGR031G2686' => 'pgr', 'PGR042G0809' => 'pgr', 'PGR142G0193' => 'pgr', 'PGSC0003DMG400011066' => 'stu', 'PGSC0003DMG400012041' => 'stu', 'PGSC0003DMG400013678' => 'stu', 'PGSC0003DMG400023477' => 'stu', 'PGSC0003DMG400025956' => 'stu', 'PGSC0003DMG401019151' => 'stu', 'Phvul.006G116400' => 'pvu', 'Phvul.007G097300' => 'pvu', 'Phvul.010G015000' => 'pvu', 'Phvul.010G083900' => 'pvu', 'Potri.001G117100' => 'ptr', 'Potri.002G147300' => 'ptr', 'Potri.003G115600' => 'ptr', 'Potri.006G087400' => 'ptr', 'Potri.010G226100' => 'ptr', 'Potri.014G069200' => 'ptr', 'Potri.014G104000' => 'ptr', 'Potri.016G100200' => 'ptr', 'Pp3c10_20450' => 'ppa', 'Pp3c1_42400' => 'ppa', 'Pp3c3_24390' => 'ppa', 'Pp3c3_2860' => 'ppa', 'PRCOL_00003193' => 'pco', 'Prupe.2G144500' => 'ppe', 'Prupe.2G195700' => 'ppe', 'Prupe.2G209800' => 'ppe', 'Prupe.5G080000' => 'ppe', 'Prupe.6G257900' => 'ppe', 'Psat3g001160' => 'psa', 'Psat6g181880' => 'psa', 'Psat7g233720' => 'psa', 'PSO063G7587' => 'pso', 'PSO339G2145' => 'pso', 'PSO339G3369' => 'pso', 'PSO478G2747' => 'pso', 'PSO513G0140' => 'pso', 'PSO782G1614' => 'pso', 'PSO782G4889' => 'pso', 'PSO782G5485' => 'pso', 'PSO801G0241' => 'pso', 'QL07p048854' => 'qlo', 'QL08p046745' => 'qlo', 'QL08p052606' => 'qlo', 'QL08p053414' => 'qlo', 'QL08p054868' => 'qlo', 'RcHm_v2.0_Chr1g0350251' => 'rch', 'RcHm_v2.0_Chr1g0360851' => 'rch', 'RcHm_v2.0_Chr1g0362791' => 'rch', 'RcHm_v2.0_Chr3g0466281' => 'rch', 'RcHm_v2.0_Chr7g0201481' => 'rch', 'Rhsim01G0148600' => 'rsi', 'Rhsim05G0194400' => 'rsi', 'Rhsim07G0000700' => 'rsi', 'Rhsim07G0000800' => 'rsi', 'Rhsim07G0027900' => 'rsi', 'Rhsim09G0149500' => 'rsi', 'RhsimUnG0186900' => 'rsi', 'Sabra01G0089900' => 'sbr', 'Sabra02G0114700' => 'sbr', 'Sabra02G0116300' => 'sbr', 'Sabra03G0080100' => 'sbr', 'Sabra08G0024300' => 'sbr', 'Sabra10G0174300' => 'sbr', 'Sabra14G0048900' => 'sbr', 'Sabra14G0076500' => 'sbr', 'SalBow5G2513' => 'sbo', 'Sc01g0002300' => 'sci', 'Sc01g0004450' => 'sci', 'Sc06g0001680' => 'sci', 'Sc23g0003580' => 'sci', 'Sed0000913' => 'sed', 'Sed0001655' => 'sed', 'Sed0007745' => 'sed', 'Sed0010951' => 'sed', 'Sed0017599' => 'sed', 'Sed0021405' => 'sed', 'Sed0022810' => 'sed', 'SEGI_07099' => 'sgi', 'SEGI_11931' => 'sgi', 'SEGI_13187' => 'sgi', 'SEGI_29958' => 'sgi', 'SEGI_36351' => 'sgi', 'SGA_v2.0_scaffold126G33770' => 'sas', 'SGA_v2.0_scaffold153G37003' => 'sas', 'SGA_v2.0_scaffold2G01359' => 'sas', 'SGA_v2.0_scaffold5G03064' => 'sas', 'SGA_v2.0_scaffold95G28903' => 'sas', 'SHI12701' => 'shi', 'SHI26410' => 'shi', 'SHI38997' => 'shi', 'SHI53759' => 'shi', 'SHI53886' => 'shi', 'SHI54714' => 'shi', 'SMO011G0041' => 'smo', 'SMO146G0251' => 'smo', 'SMO160G0004' => 'smo', 'SMO174G0057' => 'smo', 'SMO244G0089' => 'smo', 'SMO296G0011' => 'smo', 'Solyc01g091280.3' => 'sly', 'Solyc05g047610.3' => 'sly', 'Solyc05g047640.3' => 'sly', 'Solyc05g055630.3' => 'sly', 'Solyc10g018160.2' => 'sly', 'Solyc10g084820.2' => 'sly', 'Solyc10g086565.2' => 'sly', 'Sopen01g037030' => 'spe', 'Sopen05g027920' => 'spe', 'Sopen05g034070' => 'spe', 'Sopen10g007260' => 'spe', 'Sopen10g034260' => 'spe', 'Sopen10g035950' => 'spe', 'Sp3g07710' => 'spa', 'Sp4g27420' => 'spa', 'Sp5g02450' => 'spa', 'Sp6g01280' => 'spa', 'Sp6g38480' => 'spa', 'Sp7g20780' => 'spa', 'TAR374G1413' => 'tar', 'TAR623G1777' => 'tar', 'TAR629G2370' => 'tar', 'TAR633G1759' => 'tar', 'TAR636G3387' => 'tar', 'THA.LOC104802447' => 'tha', 'THA.LOC104813916' => 'tha', 'THA.LOC104816423' => 'tha', 'THA.LOC104817246' => 'tha', 'THA.LOC104825895' => 'tha', 'Thecc.01G335200' => 'tca', 'Thecc.01G377400' => 'tca', 'Thecc.03G262200' => 'tca', 'Thecc.05G036800' => 'tca', 'Thecc.10G080500' => 'tca', 'Thecc.10G080800' => 'tca', 'Thhalv10001560m.g' => 'esa', 'Thhalv10006120m.g' => 'esa', 'Thhalv10014375m.g' => 'esa', 'Thhalv10021264m.g' => 'esa', 'Thhalv10028856m.g' => 'esa', 'TPR.G1914' => 'tpr', 'TPR.G4757' => 'tpr', 'TPR.G5595' => 'tpr', 'TWI14G0952' => 'twi', 'TWI14G1307' => 'twi', 'TWI38G2143' => 'twi', 'TWI59G0826' => 'twi', 'TWI77G0527' => 'twi', 'TWI81G0150' => 'twi', 'unitig_21.g21018' => 'ugi', 'unitig_26.g9725' => 'ugi', 'unitig_744.g24653' => 'ugi', 'unitig_749.g13778' => 'ugi', 'unitig_899.g15035' => 'ugi', 'vmacro04296' => 'vma', 'vmacro04852' => 'vma', 'vmacro13404' => 'vma', 'vmacro20169' => 'vma', 'vmacro21014' => 'vma', 'VMungo0331G0237' => 'vmu', 'VMungo0331G0706' => 'vmu', 'VMungo0331G1361' => 'vmu', 'VMungo0331G1489' => 'vmu', 'VMungo0540G1037' => 'vmu', 'VMungo0720G2487' => 'vmu', 'VMungo0720G2721' => 'vmu', 'Zm00001eb086860' => 'zma', 'Zm00001eb104760' => 'zma', 'Zm00001eb148220' => 'zma', 'Zm00001eb259030' => 'zma', 'Zm00001eb289590' => 'zma', 'Zm00001eb420150' => 'zma' ), 'gf_id' => 'HOM05D000968', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000968' ), 'data_identifier' => 'HOM05D000968', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000968', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p31690' => 'bna', 'A03p36040' => 'bna', 'A03p53730' => 'bna', 'A04p01410' => 'bna', 'A05p05420' => 'bna', 'A05p39630' => 'bna', 'A05p39640' => 'bna', 'A09p00970' => 'bna', 'A09p53060' => 'bna', 'A10p31890' => 'bna', 'Aa31LG10G15040' => 'aar', 'Aa31LG1G21090' => 'aar', 'Aa31LG1G26900' => 'aar', 'Aa31LG3G1820' => 'aar', 'Aa31LG5G1100' => 'aar', 'Aa31LG6G4740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2265' => 'aag', 'Actinidia07998' => 'ach', 'Actinidia11266' => 'ach', 'Actinidia12682' => 'ach', 'Actinidia26479' => 'ach', 'Actinidia31406' => 'ach', 'Actinidia32437' => 'ach', 'Actinidia38862' => 'ach', 'Ah.05g174230' => 'amhyb', 'Ah.05g179070' => 'amhyb', 'Ah.05g179090' => 'amhyb', 'Ah.12g059950' => 'amhyb', 'AL3G20480' => 'aly', 'AL4G44520' => 'aly', 'AL5G43110' => 'aly', 'AL6G13890' => 'aly', 'AL6G52620' => 'aly', 'AL7G30830' => 'aly', 'Aqoxy1G00899' => 'aox', 'Aqoxy5G04333' => 'aox', 'Aqoxy7G00641' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3IZ0NN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4EF6AW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W9P8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79GA3M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C43NQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFCU6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G95YVJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCHK29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LU1UG8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX91RN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGB4B1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8DA0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9H7JI' => 'arhy', 'AT3G09320' => 'ath', 'AT3G60800' => 'ath', 'AT4G00840' => 'ath', 'AT4G22750' => 'ath', 'AT5G04270' => 'ath', 'ATR0090G003' => 'atr', 'ATR0559G349' => 'atr', 'ATR0680G261' => 'atr', 'ATR0810G048' => 'atr', 'Atru.chr12.831' => 'acertr', 'Atru.chr5.303' => 'acertr', 'Atru.chr5.748' => 'acertr', 'Atru.chr8.1999' => 'acertr', 'Atru.chr9.1436' => 'acertr', 'AUR62004211' => 'cqu', 'AUR62004548' => 'cqu', 'AUR62013637' => 'cqu', 'AUR62022662' => 'cqu', 'AUR62025777' => 'cqu', 'AUR62042386' => 'cqu', 'BcaB01g02310' => 'bca', 'BcaB01g06062' => 'bca', 'BcaB02g08975' => 'bca', 'BcaB02g08980' => 'bca', 'BcaC01g04228' => 'bca', 'BcaC01g06830' => 'bca', 'BcaC02g10186' => 'bca', 'BcaC02g12214' => 'bca', 'BcaC04g24101' => 'bca', 'BcaC05g29520' => 'bca', 'BcaC05g29661' => 'bca', 'BcaC06g32130' => 'bca', 'BcaC06g32131' => 'bca', 'BcaC07g40601' => 'bca', 'BcaC07g42641' => 'bca', 'BcaNung01038' => 'bca', 'BcaNung01676' => 'bca', 'BcaNung02480' => 'bca', 'BcaNung07376' => 'bca', 'BolC3t16146H' => 'bol', 'BolC3t16637H' => 'bol', 'BolC4t22257H' => 'bol', 'BolC4t24728H' => 'bol', 'BolC5t34517H' => 'bol', 'BolC7t45703H' => 'bol', 'BolC8t51166H' => 'bol', 'BolC9t53038H' => 'bol', 'BolC9t60000H' => 'bol', 'BraA01t01345Z' => 'bra', 'BraA01t01346Z' => 'bra', 'BraA01t01348Z' => 'bra', 'BraA03t12347Z' => 'bra', 'BraA03t12775Z' => 'bra', 'BraA03t14439Z' => 'bra', 'BraA04t15860Z' => 'bra', 'BraA05t19511Z' => 'bra', 'BraA05t22746Z' => 'bra', 'BraA09t35767Z' => 'bra', 'BraA09t40732Z' => 'bra', 'BraA10t45233Z' => 'bra', 'C03p38720' => 'bna', 'C03p43680' => 'bna', 'C04p06350' => 'bna', 'C04p31800' => 'bna', 'C05p58680' => 'bna', 'C07p52110' => 'bna', 'C08p35760' => 'bna', 'C09p01050' => 'bna', 'C09p72600' => 'bna', 'CAN.G106.2' => 'can', 'CAN.G1482.1' => 'can', 'CAN.G324.12' => 'can', 'CAN.G388.20' => 'can', 'CAN.G412.7' => 'can', 'CAN.G694.32' => 'can', 'CAN.G92.12' => 'can', 'CANSAT11G2353' => 'cansat', 'CANSAT21G1398' => 'cansat', 'CANSAT56G2456' => 'cansat', 'CANSAT56G3031' => 'cansat', 'CANSAT56G4539' => 'cansat', 'CARHR083680' => 'chi', 'CARHR171190' => 'chi', 'CARHR209010' => 'chi', 'CARHR229680' => 'chi', 'CARHR249490' => 'chi', 'Carub.0003s0844' => 'cru', 'Carub.0005s2755' => 'cru', 'Carub.0006s0322' => 'cru', 'Carub.0006s3586' => 'cru', 'Carub.0007s1855' => 'cru', 'Ca_07808_v3' => 'car', 'Ca_09535_v3' => 'car', 'Ca_10548_v3' => 'car', 'Ca_19913_v3' => 'car', 'Ca_19916_v3' => 'car', 'Ca_19975_v3' => 'car', 'CBR_g22876' => 'cbr', 'CBR_g22879' => 'cbr', 'CBR_g38491' => 'cbr', 'CBR_g54185' => 'cbr', 'CBR_g54190' => 'cbr', 'Cc02_g11020' => 'ccan', 'Cc02_g23920' => 'ccan', 'Cc02_g39860' => 'ccan', 'Cc02_g39870' => 'ccan', 'Cc03_g06760' => 'ccan', 'Cc06_g02450' => 'ccan', 'Cc09_g09450' => 'ccan', 'CDE02G1959' => 'cde', 'CDE04G0600' => 'cde', 'CDE07G1996' => 'cde', 'CDE07G2078' => 'cde', 'CDE11G0611' => 'cde', 'Cfa001683' => 'cfa', 'Cfa001734' => 'cfa', 'Cfa001737' => 'cfa', 'Cfa003751' => 'cfa', 'Cfa012019' => 'cfa', 'Cfa017353' => 'cfa', 'Cfa017732' => 'cfa', 'Cfa022464' => 'cfa', 'Ciclev10012400m.g' => 'ccl', 'Ciclev10021242m.g' => 'ccl', 'Ciclev10021302m.g' => 'ccl', 'Ciclev10021463m.g' => 'ccl', 'Ciclev10032359m.g' => 'ccl', 'CiPaw.01G081000' => 'cil', 'CiPaw.01G262500' => 'cil', 'CiPaw.01G269800' => 'cil', 'CiPaw.02G168400' => 'cil', 'CiPaw.05G119500' => 'cil', 'CiPaw.11G147300' => 'cil', 'ClCG01G003630' => 'cla', 'ClCG05G000510' => 'cla', 'ClCG05G002300' => 'cla', 'ClCG08G007650' => 'cla', 'ClCG10G021250' => 'cla', 'COL.COLO4_06218' => 'col', 'COL.COLO4_12538' => 'col', 'COL.COLO4_14775' => 'col', 'COL.COLO4_23875' => 'col', 'Cpa.g.sc141.16' => 'cpa', 'Cpa.g.sc169.16' => 'cpa', 'Cpa.g.sc244.4' => 'cpa', 'Cpa.g.sc244.5' => 'cpa', 'Cpa.g.sc29.87' => 'cpa', 'Cpa.g.sc53.115' => 'cpa', 'Cre03.g207502' => 'cre', 'Cre06.g277000' => 'cre', 'Cre09.g394050' => 'cre', 'CsaV3_3G007680' => 'csa', 'CsaV3_3G009710' => 'csa', 'CsaV3_3G034790' => 'csa', 'CsaV3_5G003750' => 'csa', 'CsaV3_6G036620' => 'csa', 'CSS0002288' => 'camsi', 'CSS0011250' => 'camsi', 'CSS0021619' => 'camsi', 'CSS0046701' => 'camsi', 'DCAR_006420' => 'dca', 'DCAR_006865' => 'dca', 'DCAR_008558' => 'dca', 'DCAR_028754' => 'dca', 'DCAR_028755' => 'dca', 'Dinv31218' => 'din', 'Dinv32371' => 'din', 'Dinv34250' => 'din', 'Dinv37156' => 'din', 'Dinv43704' => 'din', 'Duzib093G1811' => 'dzi', 'Duzib106G1622' => 'dzi', 'Duzib114G0504' => 'dzi', 'Duzib128G0338' => 'dzi', 'Duzib128G1577' => 'dzi', 'Duzib133G0104' => 'dzi', 'Duzib133G1080' => 'dzi', 'Duzib138G0324' => 'dzi', 'Duzib138G0394' => 'dzi', 'Duzib205G0122' => 'dzi', 'Duzib268G1020' => 'dzi', 'Duzib268G1359' => 'dzi', 'ECA232G3929' => 'eca', 'ECA236G2210' => 'eca', 'ECA236G2287' => 'eca', 'ECA240G4568' => 'eca', 'ECA247G0894' => 'eca', 'EL10Ac1g00200' => 'bvu', 'EL10Ac1g00886' => 'bvu', 'EL10As1g23091' => 'bvu', 'EL10As1g23092' => 'bvu', 'Eucgr.A01284' => 'egr', 'Eucgr.A01285' => 'egr', 'Eucgr.D02456' => 'egr', 'Eucgr.E00018' => 'egr', 'Eucgr.E01439' => 'egr', 'Eucgr.G02859' => 'egr', 'FAN01G0168' => 'fan', 'FAN01G0453' => 'fan', 'FAN01G2761' => 'fan', 'FAN02G1239' => 'fan', 'FAN03G0645' => 'fan', 'FAN03G2707' => 'fan', 'FAN03G2978' => 'fan', 'FAN04G0227' => 'fan', 'FAN06G0091' => 'fan', 'FAN06G1418' => 'fan', 'FAN06G1512' => 'fan', 'FAN06G1986' => 'fan', 'FAN06G2905' => 'fan', 'FAN06G4325' => 'fan', 'FAN08G0033' => 'fan', 'FAN09G0642' => 'fan', 'FAN10G1763' => 'fan', 'FAN10G2026' => 'fan', 'FAN10G2513' => 'fan', 'FAN10G3402' => 'fan', 'FAN10G3564' => 'fan', 'FAN10G3987' => 'fan', 'FAN13G1490' => 'fan', 'FAN14G5857' => 'fan', 'FAN18G1188' => 'fan', 'FvH4_5g00750' => 'fve', 'FvH4_6g13410' => 'fve', 'FvH4_7g11740' => 'fve', 'FvH4_7g17410' => 'fve', 'FvH4_7g18860' => 'fve', 'Glyma.01G099100' => 'gma', 'Glyma.01G142300' => 'gma', 'Glyma.03G025500' => 'gma', 'Glyma.03G069700' => 'gma', 'Glyma.03G260000' => 'gma', 'Glyma.09G269800' => 'gma', 'Glyma.10G208700' => 'gma', 'Glyma.18G220400' => 'gma', 'Glyma.20G182000' => 'gma', 'Gohir.A01G221726' => 'ghi', 'Gohir.A07G134600' => 'ghi', 'Gohir.A07G146000' => 'ghi', 'Gohir.A08G173900' => 'ghi', 'Gohir.A09G194900' => 'ghi', 'Gohir.A10G204100' => 'ghi', 'Gohir.A11G080600' => 'ghi', 'Gohir.A11G327500' => 'ghi', 'Gohir.A12G101800' => 'ghi', 'Gohir.D01G211200' => 'ghi', 'Gohir.D07G139200' => 'ghi', 'Gohir.D07G152100' => 'ghi', 'Gohir.D08G192600' => 'ghi', 'Gohir.D09G189200' => 'ghi', 'Gohir.D10G212000' => 'ghi', 'Gohir.D11G085200' => 'ghi', 'Gohir.D11G346400' => 'ghi', 'Gohir.D12G104800' => 'ghi', 'Gorai.001G151300' => 'gra', 'Gorai.001G174100' => 'gra', 'Gorai.002G257000' => 'gra', 'Gorai.004G202600' => 'gra', 'Gorai.007G090900' => 'gra', 'Gorai.007G376700' => 'gra', 'Gorai.008G114100' => 'gra', 'Gorai.011G237900' => 'gra', 'GSVIVG01005450001' => 'vvi', 'GSVIVG01016232001' => 'vvi', 'GSVIVG01026157001' => 'vvi', 'GSVIVG01027419001' => 'vvi', 'GSVIVG01027631001' => 'vvi', 'GSVIVG01034143001' => 'vvi', 'HanXRQChr03g0093921' => 'han', 'HanXRQChr04g0120001' => 'han', 'HanXRQChr04g0122561' => 'han', 'HanXRQChr09g0246851' => 'han', 'HanXRQChr10g0293311' => 'han', 'HanXRQChr13g0425231' => 'han', 'HanXRQChr16g0532571' => 'han', 'Haze_09050' => 'cav', 'Haze_15715' => 'cav', 'Haze_15716' => 'cav', 'Haze_16803' => 'cav', 'Haze_16850' => 'cav', 'Hma1.2p1_0301F.1_g118655' => 'hma', 'Hma1.2p1_0309F.1_g120590' => 'hma', 'Hma1.2p1_0936F.1_g238900' => 'hma', 'Hma1.2p1_3552F.1_g336740' => 'hma', 'HPP92_003520' => 'vpl', 'HPP92_006628' => 'vpl', 'HPP92_006645' => 'vpl', 'HPP92_014669' => 'vpl', 'HPP92_015077' => 'vpl', 'Hund16742' => 'sun', 'Hund17022' => 'sun', 'Lalb_Chr02g0152131' => 'lal', 'Lalb_Chr05g0225371' => 'lal', 'Lalb_Chr07g0189841' => 'lal', 'Lalb_Chr07g0192961' => 'lal', 'Lalb_Chr12g0208221' => 'lal', 'Lalb_Chr13g0291211' => 'lal', 'Lalb_Chr13g0291781' => 'lal', 'Lalb_Chr18g0044651' => 'lal', 'Lalb_Chr21g0313731' => 'lal', 'Lj1g0022533' => 'lja', 'Lj2A18T50' => 'lonja', 'Lj2A92G93' => 'lonja', 'Lj3A965T73' => 'lonja', 'Lj3g0000673' => 'lja', 'Lj3g0002666' => 'lja', 'Lj4g0016985' => 'lja', 'Lj5g0003625' => 'lja', 'Lj7A529G36' => 'lonja', 'Lj9A569T49' => 'lonja', 'Lj9A604T63' => 'lonja', 'Lsat_1_v5_gn_3_132060' => 'lsa', 'Lsat_1_v5_gn_4_68941' => 'lsa', 'Lsat_1_v5_gn_5_95580' => 'lsa', 'Lsat_1_v5_gn_7_161' => 'lsa', 'Lsat_1_v5_gn_7_7041' => 'lsa', 'Lsat_1_v5_gn_9_33481' => 'lsa', 'Lsat_1_v5_gn_9_68260' => 'lsa', 'Manes.01G073100' => 'mes', 'Manes.01G266300' => 'mes', 'Manes.02G033300' => 'mes', 'Manes.05G017900' => 'mes', 'Manes.05G046100' => 'mes', 'Manes.08G080900' => 'mes', 'Manes.10G049400' => 'mes', 'Mapoly0009s0186' => 'mpo', 'Mapoly0036s0118' => 'mpo', 'Mapoly0101s0046' => 'mpo', 'MBI04_g30218_MAGBIO' => 'mbi', 'MBI04_g35564_MAGBIO' => 'mbi', 'MBI12_g34011_MAGBIO' => 'mbi', 'MBI14_g04655_MAGBIO' => 'mbi', 'MCO07G653' => 'mco', 'MCO10G173' => 'mco', 'MD01G1087100' => 'mdo', 'MD01G1104200' => 'mdo', 'MD02G1205100' => 'mdo', 'MD04G1079200' => 'mdo', 'MD04G1131400' => 'mdo', 'MD07G1121600' => 'mdo', 'MD07G1157300' => 'mdo', 'MD07G1171000' => 'mdo', 'MD12G1144500' => 'mdo', 'Medtr1g094610' => 'mtr', 'Medtr4g021795' => 'mtr', 'Medtr4g023760' => 'mtr', 'Medtr7g118050' => 'mtr', 'MELO3C005582.2' => 'cme', 'MELO3C005989.2' => 'cme', 'MELO3C006192.2' => 'cme', 'MELO3C009248.2' => 'cme', 'MELO3C019817.2' => 'cme', 'Migut.B01625' => 'egut', 'Migut.B01915' => 'egut', 'Migut.F01721' => 'egut', 'Migut.J00314' => 'egut', 'MSTRG.20742' => 'ama', 'MSTRG.8134' => 'ama', 'Nitab4.5_0000096g0010' => 'nta', 'Nitab4.5_0000202g0030' => 'nta', 'Nitab4.5_0000216g0370' => 'nta', 'Nitab4.5_0000457g0230' => 'nta', 'Nitab4.5_0001702g0170' => 'nta', 'Nitab4.5_0003607g0010' => 'nta', 'Nitab4.5_0004917g0020' => 'nta', 'Nitab4.5_0007059g0010' => 'nta', 'Nitab4.5_0007184g0010' => 'nta', 'Nitab4.5_0007346g0020' => 'nta', 'Nn1g00410' => 'nnu', 'Nn1g01252' => 'nnu', 'Nn2g11168' => 'nnu', 'Nn2g13403' => 'nnu', 'Nn2g13760' => 'nnu', 'Nn4g26380' => 'nnu', 'Oeu000806.2' => 'oeu', 'Oeu005788.1' => 'oeu', 'Oeu006900.3' => 'oeu', 'Oeu007797.1' => 'oeu', 'Oeu011932.1' => 'oeu', 'Oeu022739.1' => 'oeu', 'Oeu037918.1' => 'oeu', 'Oeu055490.2' => 'oeu', 'Os01g0844400' => 'osa', 'Os02g0819100' => 'osa', 'Os03g0804300' => 'osa', 'Os05g0458000' => 'osa', 'Os07g0467800' => 'osa', 'Os12g0602200' => 'osa', 'Peaxi162Scf00013g03444' => 'pax', 'Peaxi162Scf00094g01120' => 'pax', 'Peaxi162Scf00191g01211' => 'pax', 'Peaxi162Scf00238g01110' => 'pax', 'Peaxi162Scf00330g00719' => 'pax', 'Peaxi162Scf00627g00018' => 'pax', 'PGR031G2686' => 'pgr', 'PGR042G0809' => 'pgr', 'PGR142G0193' => 'pgr', 'PGSC0003DMG400011066' => 'stu', 'PGSC0003DMG400012041' => 'stu', 'PGSC0003DMG400013678' => 'stu', 'PGSC0003DMG400023477' => 'stu', 'PGSC0003DMG400025956' => 'stu', 'PGSC0003DMG401019151' => 'stu', 'Phvul.006G116400' => 'pvu', 'Phvul.007G097300' => 'pvu', 'Phvul.010G015000' => 'pvu', 'Phvul.010G083900' => 'pvu', 'Potri.001G117100' => 'ptr', 'Potri.002G147300' => 'ptr', 'Potri.003G115600' => 'ptr', 'Potri.006G087400' => 'ptr', 'Potri.010G226100' => 'ptr', 'Potri.014G069200' => 'ptr', 'Potri.014G104000' => 'ptr', 'Potri.016G100200' => 'ptr', 'Pp3c10_20450' => 'ppa', 'Pp3c1_42400' => 'ppa', 'Pp3c3_24390' => 'ppa', 'Pp3c3_2860' => 'ppa', 'PRCOL_00003193' => 'pco', 'Prupe.2G144500' => 'ppe', 'Prupe.2G195700' => 'ppe', 'Prupe.2G209800' => 'ppe', 'Prupe.5G080000' => 'ppe', 'Prupe.6G257900' => 'ppe', 'Psat3g001160' => 'psa', 'Psat6g181880' => 'psa', 'Psat7g233720' => 'psa', 'PSO063G7587' => 'pso', 'PSO339G2145' => 'pso', 'PSO339G3369' => 'pso', 'PSO478G2747' => 'pso', 'PSO513G0140' => 'pso', 'PSO782G1614' => 'pso', 'PSO782G4889' => 'pso', 'PSO782G5485' => 'pso', 'PSO801G0241' => 'pso', 'QL07p048854' => 'qlo', 'QL08p046745' => 'qlo', 'QL08p052606' => 'qlo', 'QL08p053414' => 'qlo', 'QL08p054868' => 'qlo', 'RcHm_v2.0_Chr1g0350251' => 'rch', 'RcHm_v2.0_Chr1g0360851' => 'rch', 'RcHm_v2.0_Chr1g0362791' => 'rch', 'RcHm_v2.0_Chr3g0466281' => 'rch', 'RcHm_v2.0_Chr7g0201481' => 'rch', 'Rhsim01G0148600' => 'rsi', 'Rhsim05G0194400' => 'rsi', 'Rhsim07G0000700' => 'rsi', 'Rhsim07G0000800' => 'rsi', 'Rhsim07G0027900' => 'rsi', 'Rhsim09G0149500' => 'rsi', 'RhsimUnG0186900' => 'rsi', 'Sabra01G0089900' => 'sbr', 'Sabra02G0114700' => 'sbr', 'Sabra02G0116300' => 'sbr', 'Sabra03G0080100' => 'sbr', 'Sabra08G0024300' => 'sbr', 'Sabra10G0174300' => 'sbr', 'Sabra14G0048900' => 'sbr', 'Sabra14G0076500' => 'sbr', 'SalBow5G2513' => 'sbo', 'Sc01g0002300' => 'sci', 'Sc01g0004450' => 'sci', 'Sc06g0001680' => 'sci', 'Sc23g0003580' => 'sci', 'Sed0000913' => 'sed', 'Sed0001655' => 'sed', 'Sed0007745' => 'sed', 'Sed0010951' => 'sed', 'Sed0017599' => 'sed', 'Sed0021405' => 'sed', 'Sed0022810' => 'sed', 'SEGI_07099' => 'sgi', 'SEGI_11931' => 'sgi', 'SEGI_13187' => 'sgi', 'SEGI_29958' => 'sgi', 'SEGI_36351' => 'sgi', 'SGA_v2.0_scaffold126G33770' => 'sas', 'SGA_v2.0_scaffold153G37003' => 'sas', 'SGA_v2.0_scaffold2G01359' => 'sas', 'SGA_v2.0_scaffold5G03064' => 'sas', 'SGA_v2.0_scaffold95G28903' => 'sas', 'SHI12701' => 'shi', 'SHI26410' => 'shi', 'SHI38997' => 'shi', 'SHI53759' => 'shi', 'SHI53886' => 'shi', 'SHI54714' => 'shi', 'SMO011G0041' => 'smo', 'SMO146G0251' => 'smo', 'SMO160G0004' => 'smo', 'SMO174G0057' => 'smo', 'SMO244G0089' => 'smo', 'SMO296G0011' => 'smo', 'Solyc01g091280.3' => 'sly', 'Solyc05g047610.3' => 'sly', 'Solyc05g047640.3' => 'sly', 'Solyc05g055630.3' => 'sly', 'Solyc10g018160.2' => 'sly', 'Solyc10g084820.2' => 'sly', 'Solyc10g086565.2' => 'sly', 'Sopen01g037030' => 'spe', 'Sopen05g027920' => 'spe', 'Sopen05g034070' => 'spe', 'Sopen10g007260' => 'spe', 'Sopen10g034260' => 'spe', 'Sopen10g035950' => 'spe', 'Sp3g07710' => 'spa', 'Sp4g27420' => 'spa', 'Sp5g02450' => 'spa', 'Sp6g01280' => 'spa', 'Sp6g38480' => 'spa', 'Sp7g20780' => 'spa', 'TAR374G1413' => 'tar', 'TAR623G1777' => 'tar', 'TAR629G2370' => 'tar', 'TAR633G1759' => 'tar', 'TAR636G3387' => 'tar', 'THA.LOC104802447' => 'tha', 'THA.LOC104813916' => 'tha', 'THA.LOC104816423' => 'tha', 'THA.LOC104817246' => 'tha', 'THA.LOC104825895' => 'tha', 'Thecc.01G335200' => 'tca', 'Thecc.01G377400' => 'tca', 'Thecc.03G262200' => 'tca', 'Thecc.05G036800' => 'tca', 'Thecc.10G080500' => 'tca', 'Thecc.10G080800' => 'tca', 'Thhalv10001560m.g' => 'esa', 'Thhalv10006120m.g' => 'esa', 'Thhalv10014375m.g' => 'esa', 'Thhalv10021264m.g' => 'esa', 'Thhalv10028856m.g' => 'esa', 'TPR.G1914' => 'tpr', 'TPR.G4757' => 'tpr', 'TPR.G5595' => 'tpr', 'TWI14G0952' => 'twi', 'TWI14G1307' => 'twi', 'TWI38G2143' => 'twi', 'TWI59G0826' => 'twi', 'TWI77G0527' => 'twi', 'TWI81G0150' => 'twi', 'unitig_21.g21018' => 'ugi', 'unitig_26.g9725' => 'ugi', 'unitig_744.g24653' => 'ugi', 'unitig_749.g13778' => 'ugi', 'unitig_899.g15035' => 'ugi', 'vmacro04296' => 'vma', 'vmacro04852' => 'vma', 'vmacro13404' => 'vma', 'vmacro20169' => 'vma', 'vmacro21014' => 'vma', 'VMungo0331G0237' => 'vmu', 'VMungo0331G0706' => 'vmu', 'VMungo0331G1361' => 'vmu', 'VMungo0331G1489' => 'vmu', 'VMungo0540G1037' => 'vmu', 'VMungo0720G2487' => 'vmu', 'VMungo0720G2721' => 'vmu', 'Zm00001eb086860' => 'zma', 'Zm00001eb104760' => 'zma', 'Zm00001eb148220' => 'zma', 'Zm00001eb259030' => 'zma', 'Zm00001eb289590' => 'zma', 'Zm00001eb420150' => 'zma' ) $gf_id = 'HOM05D000968' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000968' ) $data_identifier = 'HOM05D000968' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 19, 'bol' => (int) 9, 'bra' => (int) 12, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 5, 'ccan' => (int) 7, 'cde' => (int) 5, 'cfa' => (int) 8, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 4, 'dca' => (int) 5, 'din' => (int) 5, 'dzi' => (int) 12, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 25, 'fve' => (int) 5, 'gma' => (int) 9, 'ghi' => (int) 18, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 7, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 5, 'sun' => (int) 2, 'lal' => (int) 9, 'lja' => (int) 5, 'lonja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 9, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 2, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 3, 'stu' => (int) 6, 'pvu' => (int) 4, 'ptr' => (int) 8, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 3, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 1, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 5, 'sas' => (int) 5, 'shi' => (int) 6, 'smo' => (int) 6, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 3, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420150' $species_info = array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ) $local_species = 'sci' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000968', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p31690' => 'bna', 'A03p36040' => 'bna', 'A03p53730' => 'bna', 'A04p01410' => 'bna', 'A05p05420' => 'bna', 'A05p39630' => 'bna', 'A05p39640' => 'bna', 'A09p00970' => 'bna', 'A09p53060' => 'bna', 'A10p31890' => 'bna', 'Aa31LG10G15040' => 'aar', 'Aa31LG1G21090' => 'aar', 'Aa31LG1G26900' => 'aar', 'Aa31LG3G1820' => 'aar', 'Aa31LG5G1100' => 'aar', 'Aa31LG6G4740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2265' => 'aag', 'Actinidia07998' => 'ach', 'Actinidia11266' => 'ach', 'Actinidia12682' => 'ach', 'Actinidia26479' => 'ach', 'Actinidia31406' => 'ach', 'Actinidia32437' => 'ach', 'Actinidia38862' => 'ach', 'Ah.05g174230' => 'amhyb', 'Ah.05g179070' => 'amhyb', 'Ah.05g179090' => 'amhyb', 'Ah.12g059950' => 'amhyb', 'AL3G20480' => 'aly', 'AL4G44520' => 'aly', 'AL5G43110' => 'aly', 'AL6G13890' => 'aly', 'AL6G52620' => 'aly', 'AL7G30830' => 'aly', 'Aqoxy1G00899' => 'aox', 'Aqoxy5G04333' => 'aox', 'Aqoxy7G00641' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3IZ0NN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4EF6AW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W9P8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79GA3M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C43NQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFCU6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G95YVJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCHK29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LU1UG8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX91RN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGB4B1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8DA0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9H7JI' => 'arhy', 'AT3G09320' => 'ath', 'AT3G60800' => 'ath', 'AT4G00840' => 'ath', 'AT4G22750' => 'ath', 'AT5G04270' => 'ath', 'ATR0090G003' => 'atr', 'ATR0559G349' => 'atr', 'ATR0680G261' => 'atr', 'ATR0810G048' => 'atr', 'Atru.chr12.831' => 'acertr', 'Atru.chr5.303' => 'acertr', 'Atru.chr5.748' => 'acertr', 'Atru.chr8.1999' => 'acertr', 'Atru.chr9.1436' => 'acertr', 'AUR62004211' => 'cqu', 'AUR62004548' => 'cqu', 'AUR62013637' => 'cqu', 'AUR62022662' => 'cqu', 'AUR62025777' => 'cqu', 'AUR62042386' => 'cqu', 'BcaB01g02310' => 'bca', 'BcaB01g06062' => 'bca', 'BcaB02g08975' => 'bca', 'BcaB02g08980' => 'bca', 'BcaC01g04228' => 'bca', 'BcaC01g06830' => 'bca', 'BcaC02g10186' => 'bca', 'BcaC02g12214' => 'bca', 'BcaC04g24101' => 'bca', 'BcaC05g29520' => 'bca', 'BcaC05g29661' => 'bca', 'BcaC06g32130' => 'bca', 'BcaC06g32131' => 'bca', 'BcaC07g40601' => 'bca', 'BcaC07g42641' => 'bca', 'BcaNung01038' => 'bca', 'BcaNung01676' => 'bca', 'BcaNung02480' => 'bca', 'BcaNung07376' => 'bca', 'BolC3t16146H' => 'bol', 'BolC3t16637H' => 'bol', 'BolC4t22257H' => 'bol', 'BolC4t24728H' => 'bol', 'BolC5t34517H' => 'bol', 'BolC7t45703H' => 'bol', 'BolC8t51166H' => 'bol', 'BolC9t53038H' => 'bol', 'BolC9t60000H' => 'bol', 'BraA01t01345Z' => 'bra', 'BraA01t01346Z' => 'bra', 'BraA01t01348Z' => 'bra', 'BraA03t12347Z' => 'bra', 'BraA03t12775Z' => 'bra', 'BraA03t14439Z' => 'bra', 'BraA04t15860Z' => 'bra', 'BraA05t19511Z' => 'bra', 'BraA05t22746Z' => 'bra', 'BraA09t35767Z' => 'bra', 'BraA09t40732Z' => 'bra', 'BraA10t45233Z' => 'bra', 'C03p38720' => 'bna', 'C03p43680' => 'bna', 'C04p06350' => 'bna', 'C04p31800' => 'bna', 'C05p58680' => 'bna', 'C07p52110' => 'bna', 'C08p35760' => 'bna', 'C09p01050' => 'bna', 'C09p72600' => 'bna', 'CAN.G106.2' => 'can', 'CAN.G1482.1' => 'can', 'CAN.G324.12' => 'can', 'CAN.G388.20' => 'can', 'CAN.G412.7' => 'can', 'CAN.G694.32' => 'can', 'CAN.G92.12' => 'can', 'CANSAT11G2353' => 'cansat', 'CANSAT21G1398' => 'cansat', 'CANSAT56G2456' => 'cansat', 'CANSAT56G3031' => 'cansat', 'CANSAT56G4539' => 'cansat', 'CARHR083680' => 'chi', 'CARHR171190' => 'chi', 'CARHR209010' => 'chi', 'CARHR229680' => 'chi', 'CARHR249490' => 'chi', 'Carub.0003s0844' => 'cru', 'Carub.0005s2755' => 'cru', 'Carub.0006s0322' => 'cru', 'Carub.0006s3586' => 'cru', 'Carub.0007s1855' => 'cru', 'Ca_07808_v3' => 'car', 'Ca_09535_v3' => 'car', 'Ca_10548_v3' => 'car', 'Ca_19913_v3' => 'car', 'Ca_19916_v3' => 'car', 'Ca_19975_v3' => 'car', 'CBR_g22876' => 'cbr', 'CBR_g22879' => 'cbr', 'CBR_g38491' => 'cbr', 'CBR_g54185' => 'cbr', 'CBR_g54190' => 'cbr', 'Cc02_g11020' => 'ccan', 'Cc02_g23920' => 'ccan', 'Cc02_g39860' => 'ccan', 'Cc02_g39870' => 'ccan', 'Cc03_g06760' => 'ccan', 'Cc06_g02450' => 'ccan', 'Cc09_g09450' => 'ccan', 'CDE02G1959' => 'cde', 'CDE04G0600' => 'cde', 'CDE07G1996' => 'cde', 'CDE07G2078' => 'cde', 'CDE11G0611' => 'cde', 'Cfa001683' => 'cfa', 'Cfa001734' => 'cfa', 'Cfa001737' => 'cfa', 'Cfa003751' => 'cfa', 'Cfa012019' => 'cfa', 'Cfa017353' => 'cfa', 'Cfa017732' => 'cfa', 'Cfa022464' => 'cfa', 'Ciclev10012400m.g' => 'ccl', 'Ciclev10021242m.g' => 'ccl', 'Ciclev10021302m.g' => 'ccl', 'Ciclev10021463m.g' => 'ccl', 'Ciclev10032359m.g' => 'ccl', 'CiPaw.01G081000' => 'cil', 'CiPaw.01G262500' => 'cil', 'CiPaw.01G269800' => 'cil', 'CiPaw.02G168400' => 'cil', 'CiPaw.05G119500' => 'cil', 'CiPaw.11G147300' => 'cil', 'ClCG01G003630' => 'cla', 'ClCG05G000510' => 'cla', 'ClCG05G002300' => 'cla', 'ClCG08G007650' => 'cla', 'ClCG10G021250' => 'cla', 'COL.COLO4_06218' => 'col', 'COL.COLO4_12538' => 'col', 'COL.COLO4_14775' => 'col', 'COL.COLO4_23875' => 'col', 'Cpa.g.sc141.16' => 'cpa', 'Cpa.g.sc169.16' => 'cpa', 'Cpa.g.sc244.4' => 'cpa', 'Cpa.g.sc244.5' => 'cpa', 'Cpa.g.sc29.87' => 'cpa', 'Cpa.g.sc53.115' => 'cpa', 'Cre03.g207502' => 'cre', 'Cre06.g277000' => 'cre', 'Cre09.g394050' => 'cre', 'CsaV3_3G007680' => 'csa', 'CsaV3_3G009710' => 'csa', 'CsaV3_3G034790' => 'csa', 'CsaV3_5G003750' => 'csa', 'CsaV3_6G036620' => 'csa', 'CSS0002288' => 'camsi', 'CSS0011250' => 'camsi', 'CSS0021619' => 'camsi', 'CSS0046701' => 'camsi', 'DCAR_006420' => 'dca', 'DCAR_006865' => 'dca', 'DCAR_008558' => 'dca', 'DCAR_028754' => 'dca', 'DCAR_028755' => 'dca', 'Dinv31218' => 'din', 'Dinv32371' => 'din', 'Dinv34250' => 'din', 'Dinv37156' => 'din', 'Dinv43704' => 'din', 'Duzib093G1811' => 'dzi', 'Duzib106G1622' => 'dzi', 'Duzib114G0504' => 'dzi', 'Duzib128G0338' => 'dzi', 'Duzib128G1577' => 'dzi', 'Duzib133G0104' => 'dzi', 'Duzib133G1080' => 'dzi', 'Duzib138G0324' => 'dzi', 'Duzib138G0394' => 'dzi', 'Duzib205G0122' => 'dzi', 'Duzib268G1020' => 'dzi', 'Duzib268G1359' => 'dzi', 'ECA232G3929' => 'eca', 'ECA236G2210' => 'eca', 'ECA236G2287' => 'eca', 'ECA240G4568' => 'eca', 'ECA247G0894' => 'eca', 'EL10Ac1g00200' => 'bvu', 'EL10Ac1g00886' => 'bvu', 'EL10As1g23091' => 'bvu', 'EL10As1g23092' => 'bvu', 'Eucgr.A01284' => 'egr', 'Eucgr.A01285' => 'egr', 'Eucgr.D02456' => 'egr', 'Eucgr.E00018' => 'egr', 'Eucgr.E01439' => 'egr', 'Eucgr.G02859' => 'egr', 'FAN01G0168' => 'fan', 'FAN01G0453' => 'fan', 'FAN01G2761' => 'fan', 'FAN02G1239' => 'fan', 'FAN03G0645' => 'fan', 'FAN03G2707' => 'fan', 'FAN03G2978' => 'fan', 'FAN04G0227' => 'fan', 'FAN06G0091' => 'fan', 'FAN06G1418' => 'fan', 'FAN06G1512' => 'fan', 'FAN06G1986' => 'fan', 'FAN06G2905' => 'fan', 'FAN06G4325' => 'fan', 'FAN08G0033' => 'fan', 'FAN09G0642' => 'fan', 'FAN10G1763' => 'fan', 'FAN10G2026' => 'fan', 'FAN10G2513' => 'fan', 'FAN10G3402' => 'fan', 'FAN10G3564' => 'fan', 'FAN10G3987' => 'fan', 'FAN13G1490' => 'fan', 'FAN14G5857' => 'fan', 'FAN18G1188' => 'fan', 'FvH4_5g00750' => 'fve', 'FvH4_6g13410' => 'fve', 'FvH4_7g11740' => 'fve', 'FvH4_7g17410' => 'fve', 'FvH4_7g18860' => 'fve', 'Glyma.01G099100' => 'gma', 'Glyma.01G142300' => 'gma', 'Glyma.03G025500' => 'gma', 'Glyma.03G069700' => 'gma', 'Glyma.03G260000' => 'gma', 'Glyma.09G269800' => 'gma', 'Glyma.10G208700' => 'gma', 'Glyma.18G220400' => 'gma', 'Glyma.20G182000' => 'gma', 'Gohir.A01G221726' => 'ghi', 'Gohir.A07G134600' => 'ghi', 'Gohir.A07G146000' => 'ghi', 'Gohir.A08G173900' => 'ghi', 'Gohir.A09G194900' => 'ghi', 'Gohir.A10G204100' => 'ghi', 'Gohir.A11G080600' => 'ghi', 'Gohir.A11G327500' => 'ghi', 'Gohir.A12G101800' => 'ghi', 'Gohir.D01G211200' => 'ghi', 'Gohir.D07G139200' => 'ghi', 'Gohir.D07G152100' => 'ghi', 'Gohir.D08G192600' => 'ghi', 'Gohir.D09G189200' => 'ghi', 'Gohir.D10G212000' => 'ghi', 'Gohir.D11G085200' => 'ghi', 'Gohir.D11G346400' => 'ghi', 'Gohir.D12G104800' => 'ghi', 'Gorai.001G151300' => 'gra', 'Gorai.001G174100' => 'gra', 'Gorai.002G257000' => 'gra', 'Gorai.004G202600' => 'gra', 'Gorai.007G090900' => 'gra', 'Gorai.007G376700' => 'gra', 'Gorai.008G114100' => 'gra', 'Gorai.011G237900' => 'gra', 'GSVIVG01005450001' => 'vvi', 'GSVIVG01016232001' => 'vvi', 'GSVIVG01026157001' => 'vvi', 'GSVIVG01027419001' => 'vvi', 'GSVIVG01027631001' => 'vvi', 'GSVIVG01034143001' => 'vvi', 'HanXRQChr03g0093921' => 'han', 'HanXRQChr04g0120001' => 'han', 'HanXRQChr04g0122561' => 'han', 'HanXRQChr09g0246851' => 'han', 'HanXRQChr10g0293311' => 'han', 'HanXRQChr13g0425231' => 'han', 'HanXRQChr16g0532571' => 'han', 'Haze_09050' => 'cav', 'Haze_15715' => 'cav', 'Haze_15716' => 'cav', 'Haze_16803' => 'cav', 'Haze_16850' => 'cav', 'Hma1.2p1_0301F.1_g118655' => 'hma', 'Hma1.2p1_0309F.1_g120590' => 'hma', 'Hma1.2p1_0936F.1_g238900' => 'hma', 'Hma1.2p1_3552F.1_g336740' => 'hma', 'HPP92_003520' => 'vpl', 'HPP92_006628' => 'vpl', 'HPP92_006645' => 'vpl', 'HPP92_014669' => 'vpl', 'HPP92_015077' => 'vpl', 'Hund16742' => 'sun', 'Hund17022' => 'sun', 'Lalb_Chr02g0152131' => 'lal', 'Lalb_Chr05g0225371' => 'lal', 'Lalb_Chr07g0189841' => 'lal', 'Lalb_Chr07g0192961' => 'lal', 'Lalb_Chr12g0208221' => 'lal', 'Lalb_Chr13g0291211' => 'lal', 'Lalb_Chr13g0291781' => 'lal', 'Lalb_Chr18g0044651' => 'lal', 'Lalb_Chr21g0313731' => 'lal', 'Lj1g0022533' => 'lja', 'Lj2A18T50' => 'lonja', 'Lj2A92G93' => 'lonja', 'Lj3A965T73' => 'lonja', 'Lj3g0000673' => 'lja', 'Lj3g0002666' => 'lja', 'Lj4g0016985' => 'lja', 'Lj5g0003625' => 'lja', 'Lj7A529G36' => 'lonja', 'Lj9A569T49' => 'lonja', 'Lj9A604T63' => 'lonja', 'Lsat_1_v5_gn_3_132060' => 'lsa', 'Lsat_1_v5_gn_4_68941' => 'lsa', 'Lsat_1_v5_gn_5_95580' => 'lsa', 'Lsat_1_v5_gn_7_161' => 'lsa', 'Lsat_1_v5_gn_7_7041' => 'lsa', 'Lsat_1_v5_gn_9_33481' => 'lsa', 'Lsat_1_v5_gn_9_68260' => 'lsa', 'Manes.01G073100' => 'mes', 'Manes.01G266300' => 'mes', 'Manes.02G033300' => 'mes', 'Manes.05G017900' => 'mes', 'Manes.05G046100' => 'mes', 'Manes.08G080900' => 'mes', 'Manes.10G049400' => 'mes', 'Mapoly0009s0186' => 'mpo', 'Mapoly0036s0118' => 'mpo', 'Mapoly0101s0046' => 'mpo', 'MBI04_g30218_MAGBIO' => 'mbi', 'MBI04_g35564_MAGBIO' => 'mbi', 'MBI12_g34011_MAGBIO' => 'mbi', 'MBI14_g04655_MAGBIO' => 'mbi', 'MCO07G653' => 'mco', 'MCO10G173' => 'mco', 'MD01G1087100' => 'mdo', 'MD01G1104200' => 'mdo', 'MD02G1205100' => 'mdo', 'MD04G1079200' => 'mdo', 'MD04G1131400' => 'mdo', 'MD07G1121600' => 'mdo', 'MD07G1157300' => 'mdo', 'MD07G1171000' => 'mdo', 'MD12G1144500' => 'mdo', 'Medtr1g094610' => 'mtr', 'Medtr4g021795' => 'mtr', 'Medtr4g023760' => 'mtr', 'Medtr7g118050' => 'mtr', 'MELO3C005582.2' => 'cme', 'MELO3C005989.2' => 'cme', 'MELO3C006192.2' => 'cme', 'MELO3C009248.2' => 'cme', 'MELO3C019817.2' => 'cme', 'Migut.B01625' => 'egut', 'Migut.B01915' => 'egut', 'Migut.F01721' => 'egut', 'Migut.J00314' => 'egut', 'MSTRG.20742' => 'ama', 'MSTRG.8134' => 'ama', 'Nitab4.5_0000096g0010' => 'nta', 'Nitab4.5_0000202g0030' => 'nta', 'Nitab4.5_0000216g0370' => 'nta', 'Nitab4.5_0000457g0230' => 'nta', 'Nitab4.5_0001702g0170' => 'nta', 'Nitab4.5_0003607g0010' => 'nta', 'Nitab4.5_0004917g0020' => 'nta', 'Nitab4.5_0007059g0010' => 'nta', 'Nitab4.5_0007184g0010' => 'nta', 'Nitab4.5_0007346g0020' => 'nta', 'Nn1g00410' => 'nnu', 'Nn1g01252' => 'nnu', 'Nn2g11168' => 'nnu', 'Nn2g13403' => 'nnu', 'Nn2g13760' => 'nnu', 'Nn4g26380' => 'nnu', 'Oeu000806.2' => 'oeu', 'Oeu005788.1' => 'oeu', 'Oeu006900.3' => 'oeu', 'Oeu007797.1' => 'oeu', 'Oeu011932.1' => 'oeu', 'Oeu022739.1' => 'oeu', 'Oeu037918.1' => 'oeu', 'Oeu055490.2' => 'oeu', 'Os01g0844400' => 'osa', 'Os02g0819100' => 'osa', 'Os03g0804300' => 'osa', 'Os05g0458000' => 'osa', 'Os07g0467800' => 'osa', 'Os12g0602200' => 'osa', 'Peaxi162Scf00013g03444' => 'pax', 'Peaxi162Scf00094g01120' => 'pax', 'Peaxi162Scf00191g01211' => 'pax', 'Peaxi162Scf00238g01110' => 'pax', 'Peaxi162Scf00330g00719' => 'pax', 'Peaxi162Scf00627g00018' => 'pax', 'PGR031G2686' => 'pgr', 'PGR042G0809' => 'pgr', 'PGR142G0193' => 'pgr', 'PGSC0003DMG400011066' => 'stu', 'PGSC0003DMG400012041' => 'stu', 'PGSC0003DMG400013678' => 'stu', 'PGSC0003DMG400023477' => 'stu', 'PGSC0003DMG400025956' => 'stu', 'PGSC0003DMG401019151' => 'stu', 'Phvul.006G116400' => 'pvu', 'Phvul.007G097300' => 'pvu', 'Phvul.010G015000' => 'pvu', 'Phvul.010G083900' => 'pvu', 'Potri.001G117100' => 'ptr', 'Potri.002G147300' => 'ptr', 'Potri.003G115600' => 'ptr', 'Potri.006G087400' => 'ptr', 'Potri.010G226100' => 'ptr', 'Potri.014G069200' => 'ptr', 'Potri.014G104000' => 'ptr', 'Potri.016G100200' => 'ptr', 'Pp3c10_20450' => 'ppa', 'Pp3c1_42400' => 'ppa', 'Pp3c3_24390' => 'ppa', 'Pp3c3_2860' => 'ppa', 'PRCOL_00003193' => 'pco', 'Prupe.2G144500' => 'ppe', 'Prupe.2G195700' => 'ppe', 'Prupe.2G209800' => 'ppe', 'Prupe.5G080000' => 'ppe', 'Prupe.6G257900' => 'ppe', 'Psat3g001160' => 'psa', 'Psat6g181880' => 'psa', 'Psat7g233720' => 'psa', 'PSO063G7587' => 'pso', 'PSO339G2145' => 'pso', 'PSO339G3369' => 'pso', 'PSO478G2747' => 'pso', 'PSO513G0140' => 'pso', 'PSO782G1614' => 'pso', 'PSO782G4889' => 'pso', 'PSO782G5485' => 'pso', 'PSO801G0241' => 'pso', 'QL07p048854' => 'qlo', 'QL08p046745' => 'qlo', 'QL08p052606' => 'qlo', 'QL08p053414' => 'qlo', 'QL08p054868' => 'qlo', 'RcHm_v2.0_Chr1g0350251' => 'rch', 'RcHm_v2.0_Chr1g0360851' => 'rch', 'RcHm_v2.0_Chr1g0362791' => 'rch', 'RcHm_v2.0_Chr3g0466281' => 'rch', 'RcHm_v2.0_Chr7g0201481' => 'rch', 'Rhsim01G0148600' => 'rsi', 'Rhsim05G0194400' => 'rsi', 'Rhsim07G0000700' => 'rsi', 'Rhsim07G0000800' => 'rsi', 'Rhsim07G0027900' => 'rsi', 'Rhsim09G0149500' => 'rsi', 'RhsimUnG0186900' => 'rsi', 'Sabra01G0089900' => 'sbr', 'Sabra02G0114700' => 'sbr', 'Sabra02G0116300' => 'sbr', 'Sabra03G0080100' => 'sbr', 'Sabra08G0024300' => 'sbr', 'Sabra10G0174300' => 'sbr', 'Sabra14G0048900' => 'sbr', 'Sabra14G0076500' => 'sbr', 'SalBow5G2513' => 'sbo', 'Sc01g0002300' => 'sci', 'Sc01g0004450' => 'sci', 'Sc06g0001680' => 'sci', 'Sc23g0003580' => 'sci', 'Sed0000913' => 'sed', 'Sed0001655' => 'sed', 'Sed0007745' => 'sed', 'Sed0010951' => 'sed', 'Sed0017599' => 'sed', 'Sed0021405' => 'sed', 'Sed0022810' => 'sed', 'SEGI_07099' => 'sgi', 'SEGI_11931' => 'sgi', 'SEGI_13187' => 'sgi', 'SEGI_29958' => 'sgi', 'SEGI_36351' => 'sgi', 'SGA_v2.0_scaffold126G33770' => 'sas', 'SGA_v2.0_scaffold153G37003' => 'sas', 'SGA_v2.0_scaffold2G01359' => 'sas', 'SGA_v2.0_scaffold5G03064' => 'sas', 'SGA_v2.0_scaffold95G28903' => 'sas', 'SHI12701' => 'shi', 'SHI26410' => 'shi', 'SHI38997' => 'shi', 'SHI53759' => 'shi', 'SHI53886' => 'shi', 'SHI54714' => 'shi', 'SMO011G0041' => 'smo', 'SMO146G0251' => 'smo', 'SMO160G0004' => 'smo', 'SMO174G0057' => 'smo', 'SMO244G0089' => 'smo', 'SMO296G0011' => 'smo', 'Solyc01g091280.3' => 'sly', 'Solyc05g047610.3' => 'sly', 'Solyc05g047640.3' => 'sly', 'Solyc05g055630.3' => 'sly', 'Solyc10g018160.2' => 'sly', 'Solyc10g084820.2' => 'sly', 'Solyc10g086565.2' => 'sly', 'Sopen01g037030' => 'spe', 'Sopen05g027920' => 'spe', 'Sopen05g034070' => 'spe', 'Sopen10g007260' => 'spe', 'Sopen10g034260' => 'spe', 'Sopen10g035950' => 'spe', 'Sp3g07710' => 'spa', 'Sp4g27420' => 'spa', 'Sp5g02450' => 'spa', 'Sp6g01280' => 'spa', 'Sp6g38480' => 'spa', 'Sp7g20780' => 'spa', 'TAR374G1413' => 'tar', 'TAR623G1777' => 'tar', 'TAR629G2370' => 'tar', 'TAR633G1759' => 'tar', 'TAR636G3387' => 'tar', 'THA.LOC104802447' => 'tha', 'THA.LOC104813916' => 'tha', 'THA.LOC104816423' => 'tha', 'THA.LOC104817246' => 'tha', 'THA.LOC104825895' => 'tha', 'Thecc.01G335200' => 'tca', 'Thecc.01G377400' => 'tca', 'Thecc.03G262200' => 'tca', 'Thecc.05G036800' => 'tca', 'Thecc.10G080500' => 'tca', 'Thecc.10G080800' => 'tca', 'Thhalv10001560m.g' => 'esa', 'Thhalv10006120m.g' => 'esa', 'Thhalv10014375m.g' => 'esa', 'Thhalv10021264m.g' => 'esa', 'Thhalv10028856m.g' => 'esa', 'TPR.G1914' => 'tpr', 'TPR.G4757' => 'tpr', 'TPR.G5595' => 'tpr', 'TWI14G0952' => 'twi', 'TWI14G1307' => 'twi', 'TWI38G2143' => 'twi', 'TWI59G0826' => 'twi', 'TWI77G0527' => 'twi', 'TWI81G0150' => 'twi', 'unitig_21.g21018' => 'ugi', 'unitig_26.g9725' => 'ugi', 'unitig_744.g24653' => 'ugi', 'unitig_749.g13778' => 'ugi', 'unitig_899.g15035' => 'ugi', 'vmacro04296' => 'vma', 'vmacro04852' => 'vma', 'vmacro13404' => 'vma', 'vmacro20169' => 'vma', 'vmacro21014' => 'vma', 'VMungo0331G0237' => 'vmu', 'VMungo0331G0706' => 'vmu', 'VMungo0331G1361' => 'vmu', 'VMungo0331G1489' => 'vmu', 'VMungo0540G1037' => 'vmu', 'VMungo0720G2487' => 'vmu', 'VMungo0720G2721' => 'vmu', 'Zm00001eb086860' => 'zma', 'Zm00001eb104760' => 'zma', 'Zm00001eb148220' => 'zma', 'Zm00001eb259030' => 'zma', 'Zm00001eb289590' => 'zma', 'Zm00001eb420150' => 'zma' ), 'gf_id' => 'HOM05D000968', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000968' ), 'data_identifier' => 'HOM05D000968', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000968', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p31690' => 'bna', 'A03p36040' => 'bna', 'A03p53730' => 'bna', 'A04p01410' => 'bna', 'A05p05420' => 'bna', 'A05p39630' => 'bna', 'A05p39640' => 'bna', 'A09p00970' => 'bna', 'A09p53060' => 'bna', 'A10p31890' => 'bna', 'Aa31LG10G15040' => 'aar', 'Aa31LG1G21090' => 'aar', 'Aa31LG1G26900' => 'aar', 'Aa31LG3G1820' => 'aar', 'Aa31LG5G1100' => 'aar', 'Aa31LG6G4740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2265' => 'aag', 'Actinidia07998' => 'ach', 'Actinidia11266' => 'ach', 'Actinidia12682' => 'ach', 'Actinidia26479' => 'ach', 'Actinidia31406' => 'ach', 'Actinidia32437' => 'ach', 'Actinidia38862' => 'ach', 'Ah.05g174230' => 'amhyb', 'Ah.05g179070' => 'amhyb', 'Ah.05g179090' => 'amhyb', 'Ah.12g059950' => 'amhyb', 'AL3G20480' => 'aly', 'AL4G44520' => 'aly', 'AL5G43110' => 'aly', 'AL6G13890' => 'aly', 'AL6G52620' => 'aly', 'AL7G30830' => 'aly', 'Aqoxy1G00899' => 'aox', 'Aqoxy5G04333' => 'aox', 'Aqoxy7G00641' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3IZ0NN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4EF6AW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W9P8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79GA3M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C43NQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFCU6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G95YVJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCHK29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LU1UG8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX91RN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGB4B1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8DA0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9H7JI' => 'arhy', 'AT3G09320' => 'ath', 'AT3G60800' => 'ath', 'AT4G00840' => 'ath', 'AT4G22750' => 'ath', 'AT5G04270' => 'ath', 'ATR0090G003' => 'atr', 'ATR0559G349' => 'atr', 'ATR0680G261' => 'atr', 'ATR0810G048' => 'atr', 'Atru.chr12.831' => 'acertr', 'Atru.chr5.303' => 'acertr', 'Atru.chr5.748' => 'acertr', 'Atru.chr8.1999' => 'acertr', 'Atru.chr9.1436' => 'acertr', 'AUR62004211' => 'cqu', 'AUR62004548' => 'cqu', 'AUR62013637' => 'cqu', 'AUR62022662' => 'cqu', 'AUR62025777' => 'cqu', 'AUR62042386' => 'cqu', 'BcaB01g02310' => 'bca', 'BcaB01g06062' => 'bca', 'BcaB02g08975' => 'bca', 'BcaB02g08980' => 'bca', 'BcaC01g04228' => 'bca', 'BcaC01g06830' => 'bca', 'BcaC02g10186' => 'bca', 'BcaC02g12214' => 'bca', 'BcaC04g24101' => 'bca', 'BcaC05g29520' => 'bca', 'BcaC05g29661' => 'bca', 'BcaC06g32130' => 'bca', 'BcaC06g32131' => 'bca', 'BcaC07g40601' => 'bca', 'BcaC07g42641' => 'bca', 'BcaNung01038' => 'bca', 'BcaNung01676' => 'bca', 'BcaNung02480' => 'bca', 'BcaNung07376' => 'bca', 'BolC3t16146H' => 'bol', 'BolC3t16637H' => 'bol', 'BolC4t22257H' => 'bol', 'BolC4t24728H' => 'bol', 'BolC5t34517H' => 'bol', 'BolC7t45703H' => 'bol', 'BolC8t51166H' => 'bol', 'BolC9t53038H' => 'bol', 'BolC9t60000H' => 'bol', 'BraA01t01345Z' => 'bra', 'BraA01t01346Z' => 'bra', 'BraA01t01348Z' => 'bra', 'BraA03t12347Z' => 'bra', 'BraA03t12775Z' => 'bra', 'BraA03t14439Z' => 'bra', 'BraA04t15860Z' => 'bra', 'BraA05t19511Z' => 'bra', 'BraA05t22746Z' => 'bra', 'BraA09t35767Z' => 'bra', 'BraA09t40732Z' => 'bra', 'BraA10t45233Z' => 'bra', 'C03p38720' => 'bna', 'C03p43680' => 'bna', 'C04p06350' => 'bna', 'C04p31800' => 'bna', 'C05p58680' => 'bna', 'C07p52110' => 'bna', 'C08p35760' => 'bna', 'C09p01050' => 'bna', 'C09p72600' => 'bna', 'CAN.G106.2' => 'can', 'CAN.G1482.1' => 'can', 'CAN.G324.12' => 'can', 'CAN.G388.20' => 'can', 'CAN.G412.7' => 'can', 'CAN.G694.32' => 'can', 'CAN.G92.12' => 'can', 'CANSAT11G2353' => 'cansat', 'CANSAT21G1398' => 'cansat', 'CANSAT56G2456' => 'cansat', 'CANSAT56G3031' => 'cansat', 'CANSAT56G4539' => 'cansat', 'CARHR083680' => 'chi', 'CARHR171190' => 'chi', 'CARHR209010' => 'chi', 'CARHR229680' => 'chi', 'CARHR249490' => 'chi', 'Carub.0003s0844' => 'cru', 'Carub.0005s2755' => 'cru', 'Carub.0006s0322' => 'cru', 'Carub.0006s3586' => 'cru', 'Carub.0007s1855' => 'cru', 'Ca_07808_v3' => 'car', 'Ca_09535_v3' => 'car', 'Ca_10548_v3' => 'car', 'Ca_19913_v3' => 'car', 'Ca_19916_v3' => 'car', 'Ca_19975_v3' => 'car', 'CBR_g22876' => 'cbr', 'CBR_g22879' => 'cbr', 'CBR_g38491' => 'cbr', 'CBR_g54185' => 'cbr', 'CBR_g54190' => 'cbr', 'Cc02_g11020' => 'ccan', 'Cc02_g23920' => 'ccan', 'Cc02_g39860' => 'ccan', 'Cc02_g39870' => 'ccan', 'Cc03_g06760' => 'ccan', 'Cc06_g02450' => 'ccan', 'Cc09_g09450' => 'ccan', 'CDE02G1959' => 'cde', 'CDE04G0600' => 'cde', 'CDE07G1996' => 'cde', 'CDE07G2078' => 'cde', 'CDE11G0611' => 'cde', 'Cfa001683' => 'cfa', 'Cfa001734' => 'cfa', 'Cfa001737' => 'cfa', 'Cfa003751' => 'cfa', 'Cfa012019' => 'cfa', 'Cfa017353' => 'cfa', 'Cfa017732' => 'cfa', 'Cfa022464' => 'cfa', 'Ciclev10012400m.g' => 'ccl', 'Ciclev10021242m.g' => 'ccl', 'Ciclev10021302m.g' => 'ccl', 'Ciclev10021463m.g' => 'ccl', 'Ciclev10032359m.g' => 'ccl', 'CiPaw.01G081000' => 'cil', 'CiPaw.01G262500' => 'cil', 'CiPaw.01G269800' => 'cil', 'CiPaw.02G168400' => 'cil', 'CiPaw.05G119500' => 'cil', 'CiPaw.11G147300' => 'cil', 'ClCG01G003630' => 'cla', 'ClCG05G000510' => 'cla', 'ClCG05G002300' => 'cla', 'ClCG08G007650' => 'cla', 'ClCG10G021250' => 'cla', 'COL.COLO4_06218' => 'col', 'COL.COLO4_12538' => 'col', 'COL.COLO4_14775' => 'col', 'COL.COLO4_23875' => 'col', 'Cpa.g.sc141.16' => 'cpa', 'Cpa.g.sc169.16' => 'cpa', 'Cpa.g.sc244.4' => 'cpa', 'Cpa.g.sc244.5' => 'cpa', 'Cpa.g.sc29.87' => 'cpa', 'Cpa.g.sc53.115' => 'cpa', 'Cre03.g207502' => 'cre', 'Cre06.g277000' => 'cre', 'Cre09.g394050' => 'cre', 'CsaV3_3G007680' => 'csa', 'CsaV3_3G009710' => 'csa', 'CsaV3_3G034790' => 'csa', 'CsaV3_5G003750' => 'csa', 'CsaV3_6G036620' => 'csa', 'CSS0002288' => 'camsi', 'CSS0011250' => 'camsi', 'CSS0021619' => 'camsi', 'CSS0046701' => 'camsi', 'DCAR_006420' => 'dca', 'DCAR_006865' => 'dca', 'DCAR_008558' => 'dca', 'DCAR_028754' => 'dca', 'DCAR_028755' => 'dca', 'Dinv31218' => 'din', 'Dinv32371' => 'din', 'Dinv34250' => 'din', 'Dinv37156' => 'din', 'Dinv43704' => 'din', 'Duzib093G1811' => 'dzi', 'Duzib106G1622' => 'dzi', 'Duzib114G0504' => 'dzi', 'Duzib128G0338' => 'dzi', 'Duzib128G1577' => 'dzi', 'Duzib133G0104' => 'dzi', 'Duzib133G1080' => 'dzi', 'Duzib138G0324' => 'dzi', 'Duzib138G0394' => 'dzi', 'Duzib205G0122' => 'dzi', 'Duzib268G1020' => 'dzi', 'Duzib268G1359' => 'dzi', 'ECA232G3929' => 'eca', 'ECA236G2210' => 'eca', 'ECA236G2287' => 'eca', 'ECA240G4568' => 'eca', 'ECA247G0894' => 'eca', 'EL10Ac1g00200' => 'bvu', 'EL10Ac1g00886' => 'bvu', 'EL10As1g23091' => 'bvu', 'EL10As1g23092' => 'bvu', 'Eucgr.A01284' => 'egr', 'Eucgr.A01285' => 'egr', 'Eucgr.D02456' => 'egr', 'Eucgr.E00018' => 'egr', 'Eucgr.E01439' => 'egr', 'Eucgr.G02859' => 'egr', 'FAN01G0168' => 'fan', 'FAN01G0453' => 'fan', 'FAN01G2761' => 'fan', 'FAN02G1239' => 'fan', 'FAN03G0645' => 'fan', 'FAN03G2707' => 'fan', 'FAN03G2978' => 'fan', 'FAN04G0227' => 'fan', 'FAN06G0091' => 'fan', 'FAN06G1418' => 'fan', 'FAN06G1512' => 'fan', 'FAN06G1986' => 'fan', 'FAN06G2905' => 'fan', 'FAN06G4325' => 'fan', 'FAN08G0033' => 'fan', 'FAN09G0642' => 'fan', 'FAN10G1763' => 'fan', 'FAN10G2026' => 'fan', 'FAN10G2513' => 'fan', 'FAN10G3402' => 'fan', 'FAN10G3564' => 'fan', 'FAN10G3987' => 'fan', 'FAN13G1490' => 'fan', 'FAN14G5857' => 'fan', 'FAN18G1188' => 'fan', 'FvH4_5g00750' => 'fve', 'FvH4_6g13410' => 'fve', 'FvH4_7g11740' => 'fve', 'FvH4_7g17410' => 'fve', 'FvH4_7g18860' => 'fve', 'Glyma.01G099100' => 'gma', 'Glyma.01G142300' => 'gma', 'Glyma.03G025500' => 'gma', 'Glyma.03G069700' => 'gma', 'Glyma.03G260000' => 'gma', 'Glyma.09G269800' => 'gma', 'Glyma.10G208700' => 'gma', 'Glyma.18G220400' => 'gma', 'Glyma.20G182000' => 'gma', 'Gohir.A01G221726' => 'ghi', 'Gohir.A07G134600' => 'ghi', 'Gohir.A07G146000' => 'ghi', 'Gohir.A08G173900' => 'ghi', 'Gohir.A09G194900' => 'ghi', 'Gohir.A10G204100' => 'ghi', 'Gohir.A11G080600' => 'ghi', 'Gohir.A11G327500' => 'ghi', 'Gohir.A12G101800' => 'ghi', 'Gohir.D01G211200' => 'ghi', 'Gohir.D07G139200' => 'ghi', 'Gohir.D07G152100' => 'ghi', 'Gohir.D08G192600' => 'ghi', 'Gohir.D09G189200' => 'ghi', 'Gohir.D10G212000' => 'ghi', 'Gohir.D11G085200' => 'ghi', 'Gohir.D11G346400' => 'ghi', 'Gohir.D12G104800' => 'ghi', 'Gorai.001G151300' => 'gra', 'Gorai.001G174100' => 'gra', 'Gorai.002G257000' => 'gra', 'Gorai.004G202600' => 'gra', 'Gorai.007G090900' => 'gra', 'Gorai.007G376700' => 'gra', 'Gorai.008G114100' => 'gra', 'Gorai.011G237900' => 'gra', 'GSVIVG01005450001' => 'vvi', 'GSVIVG01016232001' => 'vvi', 'GSVIVG01026157001' => 'vvi', 'GSVIVG01027419001' => 'vvi', 'GSVIVG01027631001' => 'vvi', 'GSVIVG01034143001' => 'vvi', 'HanXRQChr03g0093921' => 'han', 'HanXRQChr04g0120001' => 'han', 'HanXRQChr04g0122561' => 'han', 'HanXRQChr09g0246851' => 'han', 'HanXRQChr10g0293311' => 'han', 'HanXRQChr13g0425231' => 'han', 'HanXRQChr16g0532571' => 'han', 'Haze_09050' => 'cav', 'Haze_15715' => 'cav', 'Haze_15716' => 'cav', 'Haze_16803' => 'cav', 'Haze_16850' => 'cav', 'Hma1.2p1_0301F.1_g118655' => 'hma', 'Hma1.2p1_0309F.1_g120590' => 'hma', 'Hma1.2p1_0936F.1_g238900' => 'hma', 'Hma1.2p1_3552F.1_g336740' => 'hma', 'HPP92_003520' => 'vpl', 'HPP92_006628' => 'vpl', 'HPP92_006645' => 'vpl', 'HPP92_014669' => 'vpl', 'HPP92_015077' => 'vpl', 'Hund16742' => 'sun', 'Hund17022' => 'sun', 'Lalb_Chr02g0152131' => 'lal', 'Lalb_Chr05g0225371' => 'lal', 'Lalb_Chr07g0189841' => 'lal', 'Lalb_Chr07g0192961' => 'lal', 'Lalb_Chr12g0208221' => 'lal', 'Lalb_Chr13g0291211' => 'lal', 'Lalb_Chr13g0291781' => 'lal', 'Lalb_Chr18g0044651' => 'lal', 'Lalb_Chr21g0313731' => 'lal', 'Lj1g0022533' => 'lja', 'Lj2A18T50' => 'lonja', 'Lj2A92G93' => 'lonja', 'Lj3A965T73' => 'lonja', 'Lj3g0000673' => 'lja', 'Lj3g0002666' => 'lja', 'Lj4g0016985' => 'lja', 'Lj5g0003625' => 'lja', 'Lj7A529G36' => 'lonja', 'Lj9A569T49' => 'lonja', 'Lj9A604T63' => 'lonja', 'Lsat_1_v5_gn_3_132060' => 'lsa', 'Lsat_1_v5_gn_4_68941' => 'lsa', 'Lsat_1_v5_gn_5_95580' => 'lsa', 'Lsat_1_v5_gn_7_161' => 'lsa', 'Lsat_1_v5_gn_7_7041' => 'lsa', 'Lsat_1_v5_gn_9_33481' => 'lsa', 'Lsat_1_v5_gn_9_68260' => 'lsa', 'Manes.01G073100' => 'mes', 'Manes.01G266300' => 'mes', 'Manes.02G033300' => 'mes', 'Manes.05G017900' => 'mes', 'Manes.05G046100' => 'mes', 'Manes.08G080900' => 'mes', 'Manes.10G049400' => 'mes', 'Mapoly0009s0186' => 'mpo', 'Mapoly0036s0118' => 'mpo', 'Mapoly0101s0046' => 'mpo', 'MBI04_g30218_MAGBIO' => 'mbi', 'MBI04_g35564_MAGBIO' => 'mbi', 'MBI12_g34011_MAGBIO' => 'mbi', 'MBI14_g04655_MAGBIO' => 'mbi', 'MCO07G653' => 'mco', 'MCO10G173' => 'mco', 'MD01G1087100' => 'mdo', 'MD01G1104200' => 'mdo', 'MD02G1205100' => 'mdo', 'MD04G1079200' => 'mdo', 'MD04G1131400' => 'mdo', 'MD07G1121600' => 'mdo', 'MD07G1157300' => 'mdo', 'MD07G1171000' => 'mdo', 'MD12G1144500' => 'mdo', 'Medtr1g094610' => 'mtr', 'Medtr4g021795' => 'mtr', 'Medtr4g023760' => 'mtr', 'Medtr7g118050' => 'mtr', 'MELO3C005582.2' => 'cme', 'MELO3C005989.2' => 'cme', 'MELO3C006192.2' => 'cme', 'MELO3C009248.2' => 'cme', 'MELO3C019817.2' => 'cme', 'Migut.B01625' => 'egut', 'Migut.B01915' => 'egut', 'Migut.F01721' => 'egut', 'Migut.J00314' => 'egut', 'MSTRG.20742' => 'ama', 'MSTRG.8134' => 'ama', 'Nitab4.5_0000096g0010' => 'nta', 'Nitab4.5_0000202g0030' => 'nta', 'Nitab4.5_0000216g0370' => 'nta', 'Nitab4.5_0000457g0230' => 'nta', 'Nitab4.5_0001702g0170' => 'nta', 'Nitab4.5_0003607g0010' => 'nta', 'Nitab4.5_0004917g0020' => 'nta', 'Nitab4.5_0007059g0010' => 'nta', 'Nitab4.5_0007184g0010' => 'nta', 'Nitab4.5_0007346g0020' => 'nta', 'Nn1g00410' => 'nnu', 'Nn1g01252' => 'nnu', 'Nn2g11168' => 'nnu', 'Nn2g13403' => 'nnu', 'Nn2g13760' => 'nnu', 'Nn4g26380' => 'nnu', 'Oeu000806.2' => 'oeu', 'Oeu005788.1' => 'oeu', 'Oeu006900.3' => 'oeu', 'Oeu007797.1' => 'oeu', 'Oeu011932.1' => 'oeu', 'Oeu022739.1' => 'oeu', 'Oeu037918.1' => 'oeu', 'Oeu055490.2' => 'oeu', 'Os01g0844400' => 'osa', 'Os02g0819100' => 'osa', 'Os03g0804300' => 'osa', 'Os05g0458000' => 'osa', 'Os07g0467800' => 'osa', 'Os12g0602200' => 'osa', 'Peaxi162Scf00013g03444' => 'pax', 'Peaxi162Scf00094g01120' => 'pax', 'Peaxi162Scf00191g01211' => 'pax', 'Peaxi162Scf00238g01110' => 'pax', 'Peaxi162Scf00330g00719' => 'pax', 'Peaxi162Scf00627g00018' => 'pax', 'PGR031G2686' => 'pgr', 'PGR042G0809' => 'pgr', 'PGR142G0193' => 'pgr', 'PGSC0003DMG400011066' => 'stu', 'PGSC0003DMG400012041' => 'stu', 'PGSC0003DMG400013678' => 'stu', 'PGSC0003DMG400023477' => 'stu', 'PGSC0003DMG400025956' => 'stu', 'PGSC0003DMG401019151' => 'stu', 'Phvul.006G116400' => 'pvu', 'Phvul.007G097300' => 'pvu', 'Phvul.010G015000' => 'pvu', 'Phvul.010G083900' => 'pvu', 'Potri.001G117100' => 'ptr', 'Potri.002G147300' => 'ptr', 'Potri.003G115600' => 'ptr', 'Potri.006G087400' => 'ptr', 'Potri.010G226100' => 'ptr', 'Potri.014G069200' => 'ptr', 'Potri.014G104000' => 'ptr', 'Potri.016G100200' => 'ptr', 'Pp3c10_20450' => 'ppa', 'Pp3c1_42400' => 'ppa', 'Pp3c3_24390' => 'ppa', 'Pp3c3_2860' => 'ppa', 'PRCOL_00003193' => 'pco', 'Prupe.2G144500' => 'ppe', 'Prupe.2G195700' => 'ppe', 'Prupe.2G209800' => 'ppe', 'Prupe.5G080000' => 'ppe', 'Prupe.6G257900' => 'ppe', 'Psat3g001160' => 'psa', 'Psat6g181880' => 'psa', 'Psat7g233720' => 'psa', 'PSO063G7587' => 'pso', 'PSO339G2145' => 'pso', 'PSO339G3369' => 'pso', 'PSO478G2747' => 'pso', 'PSO513G0140' => 'pso', 'PSO782G1614' => 'pso', 'PSO782G4889' => 'pso', 'PSO782G5485' => 'pso', 'PSO801G0241' => 'pso', 'QL07p048854' => 'qlo', 'QL08p046745' => 'qlo', 'QL08p052606' => 'qlo', 'QL08p053414' => 'qlo', 'QL08p054868' => 'qlo', 'RcHm_v2.0_Chr1g0350251' => 'rch', 'RcHm_v2.0_Chr1g0360851' => 'rch', 'RcHm_v2.0_Chr1g0362791' => 'rch', 'RcHm_v2.0_Chr3g0466281' => 'rch', 'RcHm_v2.0_Chr7g0201481' => 'rch', 'Rhsim01G0148600' => 'rsi', 'Rhsim05G0194400' => 'rsi', 'Rhsim07G0000700' => 'rsi', 'Rhsim07G0000800' => 'rsi', 'Rhsim07G0027900' => 'rsi', 'Rhsim09G0149500' => 'rsi', 'RhsimUnG0186900' => 'rsi', 'Sabra01G0089900' => 'sbr', 'Sabra02G0114700' => 'sbr', 'Sabra02G0116300' => 'sbr', 'Sabra03G0080100' => 'sbr', 'Sabra08G0024300' => 'sbr', 'Sabra10G0174300' => 'sbr', 'Sabra14G0048900' => 'sbr', 'Sabra14G0076500' => 'sbr', 'SalBow5G2513' => 'sbo', 'Sc01g0002300' => 'sci', 'Sc01g0004450' => 'sci', 'Sc06g0001680' => 'sci', 'Sc23g0003580' => 'sci', 'Sed0000913' => 'sed', 'Sed0001655' => 'sed', 'Sed0007745' => 'sed', 'Sed0010951' => 'sed', 'Sed0017599' => 'sed', 'Sed0021405' => 'sed', 'Sed0022810' => 'sed', 'SEGI_07099' => 'sgi', 'SEGI_11931' => 'sgi', 'SEGI_13187' => 'sgi', 'SEGI_29958' => 'sgi', 'SEGI_36351' => 'sgi', 'SGA_v2.0_scaffold126G33770' => 'sas', 'SGA_v2.0_scaffold153G37003' => 'sas', 'SGA_v2.0_scaffold2G01359' => 'sas', 'SGA_v2.0_scaffold5G03064' => 'sas', 'SGA_v2.0_scaffold95G28903' => 'sas', 'SHI12701' => 'shi', 'SHI26410' => 'shi', 'SHI38997' => 'shi', 'SHI53759' => 'shi', 'SHI53886' => 'shi', 'SHI54714' => 'shi', 'SMO011G0041' => 'smo', 'SMO146G0251' => 'smo', 'SMO160G0004' => 'smo', 'SMO174G0057' => 'smo', 'SMO244G0089' => 'smo', 'SMO296G0011' => 'smo', 'Solyc01g091280.3' => 'sly', 'Solyc05g047610.3' => 'sly', 'Solyc05g047640.3' => 'sly', 'Solyc05g055630.3' => 'sly', 'Solyc10g018160.2' => 'sly', 'Solyc10g084820.2' => 'sly', 'Solyc10g086565.2' => 'sly', 'Sopen01g037030' => 'spe', 'Sopen05g027920' => 'spe', 'Sopen05g034070' => 'spe', 'Sopen10g007260' => 'spe', 'Sopen10g034260' => 'spe', 'Sopen10g035950' => 'spe', 'Sp3g07710' => 'spa', 'Sp4g27420' => 'spa', 'Sp5g02450' => 'spa', 'Sp6g01280' => 'spa', 'Sp6g38480' => 'spa', 'Sp7g20780' => 'spa', 'TAR374G1413' => 'tar', 'TAR623G1777' => 'tar', 'TAR629G2370' => 'tar', 'TAR633G1759' => 'tar', 'TAR636G3387' => 'tar', 'THA.LOC104802447' => 'tha', 'THA.LOC104813916' => 'tha', 'THA.LOC104816423' => 'tha', 'THA.LOC104817246' => 'tha', 'THA.LOC104825895' => 'tha', 'Thecc.01G335200' => 'tca', 'Thecc.01G377400' => 'tca', 'Thecc.03G262200' => 'tca', 'Thecc.05G036800' => 'tca', 'Thecc.10G080500' => 'tca', 'Thecc.10G080800' => 'tca', 'Thhalv10001560m.g' => 'esa', 'Thhalv10006120m.g' => 'esa', 'Thhalv10014375m.g' => 'esa', 'Thhalv10021264m.g' => 'esa', 'Thhalv10028856m.g' => 'esa', 'TPR.G1914' => 'tpr', 'TPR.G4757' => 'tpr', 'TPR.G5595' => 'tpr', 'TWI14G0952' => 'twi', 'TWI14G1307' => 'twi', 'TWI38G2143' => 'twi', 'TWI59G0826' => 'twi', 'TWI77G0527' => 'twi', 'TWI81G0150' => 'twi', 'unitig_21.g21018' => 'ugi', 'unitig_26.g9725' => 'ugi', 'unitig_744.g24653' => 'ugi', 'unitig_749.g13778' => 'ugi', 'unitig_899.g15035' => 'ugi', 'vmacro04296' => 'vma', 'vmacro04852' => 'vma', 'vmacro13404' => 'vma', 'vmacro20169' => 'vma', 'vmacro21014' => 'vma', 'VMungo0331G0237' => 'vmu', 'VMungo0331G0706' => 'vmu', 'VMungo0331G1361' => 'vmu', 'VMungo0331G1489' => 'vmu', 'VMungo0540G1037' => 'vmu', 'VMungo0720G2487' => 'vmu', 'VMungo0720G2721' => 'vmu', 'Zm00001eb086860' => 'zma', 'Zm00001eb104760' => 'zma', 'Zm00001eb148220' => 'zma', 'Zm00001eb259030' => 'zma', 'Zm00001eb289590' => 'zma', 'Zm00001eb420150' => 'zma' ) $gf_id = 'HOM05D000968' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000968' ) $data_identifier = 'HOM05D000968' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 19, 'bol' => (int) 9, 'bra' => (int) 12, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 5, 'ccan' => (int) 7, 'cde' => (int) 5, 'cfa' => (int) 8, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 4, 'dca' => (int) 5, 'din' => (int) 5, 'dzi' => (int) 12, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 25, 'fve' => (int) 5, 'gma' => (int) 9, 'ghi' => (int) 18, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 7, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 5, 'sun' => (int) 2, 'lal' => (int) 9, 'lja' => (int) 5, 'lonja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 9, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 2, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 3, 'stu' => (int) 6, 'pvu' => (int) 4, 'ptr' => (int) 8, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 3, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 1, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 5, 'sas' => (int) 5, 'shi' => (int) 6, 'smo' => (int) 6, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 3, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420150' $species_info = array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ) $local_species = 'sly' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000968', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p31690' => 'bna', 'A03p36040' => 'bna', 'A03p53730' => 'bna', 'A04p01410' => 'bna', 'A05p05420' => 'bna', 'A05p39630' => 'bna', 'A05p39640' => 'bna', 'A09p00970' => 'bna', 'A09p53060' => 'bna', 'A10p31890' => 'bna', 'Aa31LG10G15040' => 'aar', 'Aa31LG1G21090' => 'aar', 'Aa31LG1G26900' => 'aar', 'Aa31LG3G1820' => 'aar', 'Aa31LG5G1100' => 'aar', 'Aa31LG6G4740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2265' => 'aag', 'Actinidia07998' => 'ach', 'Actinidia11266' => 'ach', 'Actinidia12682' => 'ach', 'Actinidia26479' => 'ach', 'Actinidia31406' => 'ach', 'Actinidia32437' => 'ach', 'Actinidia38862' => 'ach', 'Ah.05g174230' => 'amhyb', 'Ah.05g179070' => 'amhyb', 'Ah.05g179090' => 'amhyb', 'Ah.12g059950' => 'amhyb', 'AL3G20480' => 'aly', 'AL4G44520' => 'aly', 'AL5G43110' => 'aly', 'AL6G13890' => 'aly', 'AL6G52620' => 'aly', 'AL7G30830' => 'aly', 'Aqoxy1G00899' => 'aox', 'Aqoxy5G04333' => 'aox', 'Aqoxy7G00641' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3IZ0NN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4EF6AW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W9P8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79GA3M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C43NQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFCU6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G95YVJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCHK29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LU1UG8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX91RN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGB4B1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8DA0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9H7JI' => 'arhy', 'AT3G09320' => 'ath', 'AT3G60800' => 'ath', 'AT4G00840' => 'ath', 'AT4G22750' => 'ath', 'AT5G04270' => 'ath', 'ATR0090G003' => 'atr', 'ATR0559G349' => 'atr', 'ATR0680G261' => 'atr', 'ATR0810G048' => 'atr', 'Atru.chr12.831' => 'acertr', 'Atru.chr5.303' => 'acertr', 'Atru.chr5.748' => 'acertr', 'Atru.chr8.1999' => 'acertr', 'Atru.chr9.1436' => 'acertr', 'AUR62004211' => 'cqu', 'AUR62004548' => 'cqu', 'AUR62013637' => 'cqu', 'AUR62022662' => 'cqu', 'AUR62025777' => 'cqu', 'AUR62042386' => 'cqu', 'BcaB01g02310' => 'bca', 'BcaB01g06062' => 'bca', 'BcaB02g08975' => 'bca', 'BcaB02g08980' => 'bca', 'BcaC01g04228' => 'bca', 'BcaC01g06830' => 'bca', 'BcaC02g10186' => 'bca', 'BcaC02g12214' => 'bca', 'BcaC04g24101' => 'bca', 'BcaC05g29520' => 'bca', 'BcaC05g29661' => 'bca', 'BcaC06g32130' => 'bca', 'BcaC06g32131' => 'bca', 'BcaC07g40601' => 'bca', 'BcaC07g42641' => 'bca', 'BcaNung01038' => 'bca', 'BcaNung01676' => 'bca', 'BcaNung02480' => 'bca', 'BcaNung07376' => 'bca', 'BolC3t16146H' => 'bol', 'BolC3t16637H' => 'bol', 'BolC4t22257H' => 'bol', 'BolC4t24728H' => 'bol', 'BolC5t34517H' => 'bol', 'BolC7t45703H' => 'bol', 'BolC8t51166H' => 'bol', 'BolC9t53038H' => 'bol', 'BolC9t60000H' => 'bol', 'BraA01t01345Z' => 'bra', 'BraA01t01346Z' => 'bra', 'BraA01t01348Z' => 'bra', 'BraA03t12347Z' => 'bra', 'BraA03t12775Z' => 'bra', 'BraA03t14439Z' => 'bra', 'BraA04t15860Z' => 'bra', 'BraA05t19511Z' => 'bra', 'BraA05t22746Z' => 'bra', 'BraA09t35767Z' => 'bra', 'BraA09t40732Z' => 'bra', 'BraA10t45233Z' => 'bra', 'C03p38720' => 'bna', 'C03p43680' => 'bna', 'C04p06350' => 'bna', 'C04p31800' => 'bna', 'C05p58680' => 'bna', 'C07p52110' => 'bna', 'C08p35760' => 'bna', 'C09p01050' => 'bna', 'C09p72600' => 'bna', 'CAN.G106.2' => 'can', 'CAN.G1482.1' => 'can', 'CAN.G324.12' => 'can', 'CAN.G388.20' => 'can', 'CAN.G412.7' => 'can', 'CAN.G694.32' => 'can', 'CAN.G92.12' => 'can', 'CANSAT11G2353' => 'cansat', 'CANSAT21G1398' => 'cansat', 'CANSAT56G2456' => 'cansat', 'CANSAT56G3031' => 'cansat', 'CANSAT56G4539' => 'cansat', 'CARHR083680' => 'chi', 'CARHR171190' => 'chi', 'CARHR209010' => 'chi', 'CARHR229680' => 'chi', 'CARHR249490' => 'chi', 'Carub.0003s0844' => 'cru', 'Carub.0005s2755' => 'cru', 'Carub.0006s0322' => 'cru', 'Carub.0006s3586' => 'cru', 'Carub.0007s1855' => 'cru', 'Ca_07808_v3' => 'car', 'Ca_09535_v3' => 'car', 'Ca_10548_v3' => 'car', 'Ca_19913_v3' => 'car', 'Ca_19916_v3' => 'car', 'Ca_19975_v3' => 'car', 'CBR_g22876' => 'cbr', 'CBR_g22879' => 'cbr', 'CBR_g38491' => 'cbr', 'CBR_g54185' => 'cbr', 'CBR_g54190' => 'cbr', 'Cc02_g11020' => 'ccan', 'Cc02_g23920' => 'ccan', 'Cc02_g39860' => 'ccan', 'Cc02_g39870' => 'ccan', 'Cc03_g06760' => 'ccan', 'Cc06_g02450' => 'ccan', 'Cc09_g09450' => 'ccan', 'CDE02G1959' => 'cde', 'CDE04G0600' => 'cde', 'CDE07G1996' => 'cde', 'CDE07G2078' => 'cde', 'CDE11G0611' => 'cde', 'Cfa001683' => 'cfa', 'Cfa001734' => 'cfa', 'Cfa001737' => 'cfa', 'Cfa003751' => 'cfa', 'Cfa012019' => 'cfa', 'Cfa017353' => 'cfa', 'Cfa017732' => 'cfa', 'Cfa022464' => 'cfa', 'Ciclev10012400m.g' => 'ccl', 'Ciclev10021242m.g' => 'ccl', 'Ciclev10021302m.g' => 'ccl', 'Ciclev10021463m.g' => 'ccl', 'Ciclev10032359m.g' => 'ccl', 'CiPaw.01G081000' => 'cil', 'CiPaw.01G262500' => 'cil', 'CiPaw.01G269800' => 'cil', 'CiPaw.02G168400' => 'cil', 'CiPaw.05G119500' => 'cil', 'CiPaw.11G147300' => 'cil', 'ClCG01G003630' => 'cla', 'ClCG05G000510' => 'cla', 'ClCG05G002300' => 'cla', 'ClCG08G007650' => 'cla', 'ClCG10G021250' => 'cla', 'COL.COLO4_06218' => 'col', 'COL.COLO4_12538' => 'col', 'COL.COLO4_14775' => 'col', 'COL.COLO4_23875' => 'col', 'Cpa.g.sc141.16' => 'cpa', 'Cpa.g.sc169.16' => 'cpa', 'Cpa.g.sc244.4' => 'cpa', 'Cpa.g.sc244.5' => 'cpa', 'Cpa.g.sc29.87' => 'cpa', 'Cpa.g.sc53.115' => 'cpa', 'Cre03.g207502' => 'cre', 'Cre06.g277000' => 'cre', 'Cre09.g394050' => 'cre', 'CsaV3_3G007680' => 'csa', 'CsaV3_3G009710' => 'csa', 'CsaV3_3G034790' => 'csa', 'CsaV3_5G003750' => 'csa', 'CsaV3_6G036620' => 'csa', 'CSS0002288' => 'camsi', 'CSS0011250' => 'camsi', 'CSS0021619' => 'camsi', 'CSS0046701' => 'camsi', 'DCAR_006420' => 'dca', 'DCAR_006865' => 'dca', 'DCAR_008558' => 'dca', 'DCAR_028754' => 'dca', 'DCAR_028755' => 'dca', 'Dinv31218' => 'din', 'Dinv32371' => 'din', 'Dinv34250' => 'din', 'Dinv37156' => 'din', 'Dinv43704' => 'din', 'Duzib093G1811' => 'dzi', 'Duzib106G1622' => 'dzi', 'Duzib114G0504' => 'dzi', 'Duzib128G0338' => 'dzi', 'Duzib128G1577' => 'dzi', 'Duzib133G0104' => 'dzi', 'Duzib133G1080' => 'dzi', 'Duzib138G0324' => 'dzi', 'Duzib138G0394' => 'dzi', 'Duzib205G0122' => 'dzi', 'Duzib268G1020' => 'dzi', 'Duzib268G1359' => 'dzi', 'ECA232G3929' => 'eca', 'ECA236G2210' => 'eca', 'ECA236G2287' => 'eca', 'ECA240G4568' => 'eca', 'ECA247G0894' => 'eca', 'EL10Ac1g00200' => 'bvu', 'EL10Ac1g00886' => 'bvu', 'EL10As1g23091' => 'bvu', 'EL10As1g23092' => 'bvu', 'Eucgr.A01284' => 'egr', 'Eucgr.A01285' => 'egr', 'Eucgr.D02456' => 'egr', 'Eucgr.E00018' => 'egr', 'Eucgr.E01439' => 'egr', 'Eucgr.G02859' => 'egr', 'FAN01G0168' => 'fan', 'FAN01G0453' => 'fan', 'FAN01G2761' => 'fan', 'FAN02G1239' => 'fan', 'FAN03G0645' => 'fan', 'FAN03G2707' => 'fan', 'FAN03G2978' => 'fan', 'FAN04G0227' => 'fan', 'FAN06G0091' => 'fan', 'FAN06G1418' => 'fan', 'FAN06G1512' => 'fan', 'FAN06G1986' => 'fan', 'FAN06G2905' => 'fan', 'FAN06G4325' => 'fan', 'FAN08G0033' => 'fan', 'FAN09G0642' => 'fan', 'FAN10G1763' => 'fan', 'FAN10G2026' => 'fan', 'FAN10G2513' => 'fan', 'FAN10G3402' => 'fan', 'FAN10G3564' => 'fan', 'FAN10G3987' => 'fan', 'FAN13G1490' => 'fan', 'FAN14G5857' => 'fan', 'FAN18G1188' => 'fan', 'FvH4_5g00750' => 'fve', 'FvH4_6g13410' => 'fve', 'FvH4_7g11740' => 'fve', 'FvH4_7g17410' => 'fve', 'FvH4_7g18860' => 'fve', 'Glyma.01G099100' => 'gma', 'Glyma.01G142300' => 'gma', 'Glyma.03G025500' => 'gma', 'Glyma.03G069700' => 'gma', 'Glyma.03G260000' => 'gma', 'Glyma.09G269800' => 'gma', 'Glyma.10G208700' => 'gma', 'Glyma.18G220400' => 'gma', 'Glyma.20G182000' => 'gma', 'Gohir.A01G221726' => 'ghi', 'Gohir.A07G134600' => 'ghi', 'Gohir.A07G146000' => 'ghi', 'Gohir.A08G173900' => 'ghi', 'Gohir.A09G194900' => 'ghi', 'Gohir.A10G204100' => 'ghi', 'Gohir.A11G080600' => 'ghi', 'Gohir.A11G327500' => 'ghi', 'Gohir.A12G101800' => 'ghi', 'Gohir.D01G211200' => 'ghi', 'Gohir.D07G139200' => 'ghi', 'Gohir.D07G152100' => 'ghi', 'Gohir.D08G192600' => 'ghi', 'Gohir.D09G189200' => 'ghi', 'Gohir.D10G212000' => 'ghi', 'Gohir.D11G085200' => 'ghi', 'Gohir.D11G346400' => 'ghi', 'Gohir.D12G104800' => 'ghi', 'Gorai.001G151300' => 'gra', 'Gorai.001G174100' => 'gra', 'Gorai.002G257000' => 'gra', 'Gorai.004G202600' => 'gra', 'Gorai.007G090900' => 'gra', 'Gorai.007G376700' => 'gra', 'Gorai.008G114100' => 'gra', 'Gorai.011G237900' => 'gra', 'GSVIVG01005450001' => 'vvi', 'GSVIVG01016232001' => 'vvi', 'GSVIVG01026157001' => 'vvi', 'GSVIVG01027419001' => 'vvi', 'GSVIVG01027631001' => 'vvi', 'GSVIVG01034143001' => 'vvi', 'HanXRQChr03g0093921' => 'han', 'HanXRQChr04g0120001' => 'han', 'HanXRQChr04g0122561' => 'han', 'HanXRQChr09g0246851' => 'han', 'HanXRQChr10g0293311' => 'han', 'HanXRQChr13g0425231' => 'han', 'HanXRQChr16g0532571' => 'han', 'Haze_09050' => 'cav', 'Haze_15715' => 'cav', 'Haze_15716' => 'cav', 'Haze_16803' => 'cav', 'Haze_16850' => 'cav', 'Hma1.2p1_0301F.1_g118655' => 'hma', 'Hma1.2p1_0309F.1_g120590' => 'hma', 'Hma1.2p1_0936F.1_g238900' => 'hma', 'Hma1.2p1_3552F.1_g336740' => 'hma', 'HPP92_003520' => 'vpl', 'HPP92_006628' => 'vpl', 'HPP92_006645' => 'vpl', 'HPP92_014669' => 'vpl', 'HPP92_015077' => 'vpl', 'Hund16742' => 'sun', 'Hund17022' => 'sun', 'Lalb_Chr02g0152131' => 'lal', 'Lalb_Chr05g0225371' => 'lal', 'Lalb_Chr07g0189841' => 'lal', 'Lalb_Chr07g0192961' => 'lal', 'Lalb_Chr12g0208221' => 'lal', 'Lalb_Chr13g0291211' => 'lal', 'Lalb_Chr13g0291781' => 'lal', 'Lalb_Chr18g0044651' => 'lal', 'Lalb_Chr21g0313731' => 'lal', 'Lj1g0022533' => 'lja', 'Lj2A18T50' => 'lonja', 'Lj2A92G93' => 'lonja', 'Lj3A965T73' => 'lonja', 'Lj3g0000673' => 'lja', 'Lj3g0002666' => 'lja', 'Lj4g0016985' => 'lja', 'Lj5g0003625' => 'lja', 'Lj7A529G36' => 'lonja', 'Lj9A569T49' => 'lonja', 'Lj9A604T63' => 'lonja', 'Lsat_1_v5_gn_3_132060' => 'lsa', 'Lsat_1_v5_gn_4_68941' => 'lsa', 'Lsat_1_v5_gn_5_95580' => 'lsa', 'Lsat_1_v5_gn_7_161' => 'lsa', 'Lsat_1_v5_gn_7_7041' => 'lsa', 'Lsat_1_v5_gn_9_33481' => 'lsa', 'Lsat_1_v5_gn_9_68260' => 'lsa', 'Manes.01G073100' => 'mes', 'Manes.01G266300' => 'mes', 'Manes.02G033300' => 'mes', 'Manes.05G017900' => 'mes', 'Manes.05G046100' => 'mes', 'Manes.08G080900' => 'mes', 'Manes.10G049400' => 'mes', 'Mapoly0009s0186' => 'mpo', 'Mapoly0036s0118' => 'mpo', 'Mapoly0101s0046' => 'mpo', 'MBI04_g30218_MAGBIO' => 'mbi', 'MBI04_g35564_MAGBIO' => 'mbi', 'MBI12_g34011_MAGBIO' => 'mbi', 'MBI14_g04655_MAGBIO' => 'mbi', 'MCO07G653' => 'mco', 'MCO10G173' => 'mco', 'MD01G1087100' => 'mdo', 'MD01G1104200' => 'mdo', 'MD02G1205100' => 'mdo', 'MD04G1079200' => 'mdo', 'MD04G1131400' => 'mdo', 'MD07G1121600' => 'mdo', 'MD07G1157300' => 'mdo', 'MD07G1171000' => 'mdo', 'MD12G1144500' => 'mdo', 'Medtr1g094610' => 'mtr', 'Medtr4g021795' => 'mtr', 'Medtr4g023760' => 'mtr', 'Medtr7g118050' => 'mtr', 'MELO3C005582.2' => 'cme', 'MELO3C005989.2' => 'cme', 'MELO3C006192.2' => 'cme', 'MELO3C009248.2' => 'cme', 'MELO3C019817.2' => 'cme', 'Migut.B01625' => 'egut', 'Migut.B01915' => 'egut', 'Migut.F01721' => 'egut', 'Migut.J00314' => 'egut', 'MSTRG.20742' => 'ama', 'MSTRG.8134' => 'ama', 'Nitab4.5_0000096g0010' => 'nta', 'Nitab4.5_0000202g0030' => 'nta', 'Nitab4.5_0000216g0370' => 'nta', 'Nitab4.5_0000457g0230' => 'nta', 'Nitab4.5_0001702g0170' => 'nta', 'Nitab4.5_0003607g0010' => 'nta', 'Nitab4.5_0004917g0020' => 'nta', 'Nitab4.5_0007059g0010' => 'nta', 'Nitab4.5_0007184g0010' => 'nta', 'Nitab4.5_0007346g0020' => 'nta', 'Nn1g00410' => 'nnu', 'Nn1g01252' => 'nnu', 'Nn2g11168' => 'nnu', 'Nn2g13403' => 'nnu', 'Nn2g13760' => 'nnu', 'Nn4g26380' => 'nnu', 'Oeu000806.2' => 'oeu', 'Oeu005788.1' => 'oeu', 'Oeu006900.3' => 'oeu', 'Oeu007797.1' => 'oeu', 'Oeu011932.1' => 'oeu', 'Oeu022739.1' => 'oeu', 'Oeu037918.1' => 'oeu', 'Oeu055490.2' => 'oeu', 'Os01g0844400' => 'osa', 'Os02g0819100' => 'osa', 'Os03g0804300' => 'osa', 'Os05g0458000' => 'osa', 'Os07g0467800' => 'osa', 'Os12g0602200' => 'osa', 'Peaxi162Scf00013g03444' => 'pax', 'Peaxi162Scf00094g01120' => 'pax', 'Peaxi162Scf00191g01211' => 'pax', 'Peaxi162Scf00238g01110' => 'pax', 'Peaxi162Scf00330g00719' => 'pax', 'Peaxi162Scf00627g00018' => 'pax', 'PGR031G2686' => 'pgr', 'PGR042G0809' => 'pgr', 'PGR142G0193' => 'pgr', 'PGSC0003DMG400011066' => 'stu', 'PGSC0003DMG400012041' => 'stu', 'PGSC0003DMG400013678' => 'stu', 'PGSC0003DMG400023477' => 'stu', 'PGSC0003DMG400025956' => 'stu', 'PGSC0003DMG401019151' => 'stu', 'Phvul.006G116400' => 'pvu', 'Phvul.007G097300' => 'pvu', 'Phvul.010G015000' => 'pvu', 'Phvul.010G083900' => 'pvu', 'Potri.001G117100' => 'ptr', 'Potri.002G147300' => 'ptr', 'Potri.003G115600' => 'ptr', 'Potri.006G087400' => 'ptr', 'Potri.010G226100' => 'ptr', 'Potri.014G069200' => 'ptr', 'Potri.014G104000' => 'ptr', 'Potri.016G100200' => 'ptr', 'Pp3c10_20450' => 'ppa', 'Pp3c1_42400' => 'ppa', 'Pp3c3_24390' => 'ppa', 'Pp3c3_2860' => 'ppa', 'PRCOL_00003193' => 'pco', 'Prupe.2G144500' => 'ppe', 'Prupe.2G195700' => 'ppe', 'Prupe.2G209800' => 'ppe', 'Prupe.5G080000' => 'ppe', 'Prupe.6G257900' => 'ppe', 'Psat3g001160' => 'psa', 'Psat6g181880' => 'psa', 'Psat7g233720' => 'psa', 'PSO063G7587' => 'pso', 'PSO339G2145' => 'pso', 'PSO339G3369' => 'pso', 'PSO478G2747' => 'pso', 'PSO513G0140' => 'pso', 'PSO782G1614' => 'pso', 'PSO782G4889' => 'pso', 'PSO782G5485' => 'pso', 'PSO801G0241' => 'pso', 'QL07p048854' => 'qlo', 'QL08p046745' => 'qlo', 'QL08p052606' => 'qlo', 'QL08p053414' => 'qlo', 'QL08p054868' => 'qlo', 'RcHm_v2.0_Chr1g0350251' => 'rch', 'RcHm_v2.0_Chr1g0360851' => 'rch', 'RcHm_v2.0_Chr1g0362791' => 'rch', 'RcHm_v2.0_Chr3g0466281' => 'rch', 'RcHm_v2.0_Chr7g0201481' => 'rch', 'Rhsim01G0148600' => 'rsi', 'Rhsim05G0194400' => 'rsi', 'Rhsim07G0000700' => 'rsi', 'Rhsim07G0000800' => 'rsi', 'Rhsim07G0027900' => 'rsi', 'Rhsim09G0149500' => 'rsi', 'RhsimUnG0186900' => 'rsi', 'Sabra01G0089900' => 'sbr', 'Sabra02G0114700' => 'sbr', 'Sabra02G0116300' => 'sbr', 'Sabra03G0080100' => 'sbr', 'Sabra08G0024300' => 'sbr', 'Sabra10G0174300' => 'sbr', 'Sabra14G0048900' => 'sbr', 'Sabra14G0076500' => 'sbr', 'SalBow5G2513' => 'sbo', 'Sc01g0002300' => 'sci', 'Sc01g0004450' => 'sci', 'Sc06g0001680' => 'sci', 'Sc23g0003580' => 'sci', 'Sed0000913' => 'sed', 'Sed0001655' => 'sed', 'Sed0007745' => 'sed', 'Sed0010951' => 'sed', 'Sed0017599' => 'sed', 'Sed0021405' => 'sed', 'Sed0022810' => 'sed', 'SEGI_07099' => 'sgi', 'SEGI_11931' => 'sgi', 'SEGI_13187' => 'sgi', 'SEGI_29958' => 'sgi', 'SEGI_36351' => 'sgi', 'SGA_v2.0_scaffold126G33770' => 'sas', 'SGA_v2.0_scaffold153G37003' => 'sas', 'SGA_v2.0_scaffold2G01359' => 'sas', 'SGA_v2.0_scaffold5G03064' => 'sas', 'SGA_v2.0_scaffold95G28903' => 'sas', 'SHI12701' => 'shi', 'SHI26410' => 'shi', 'SHI38997' => 'shi', 'SHI53759' => 'shi', 'SHI53886' => 'shi', 'SHI54714' => 'shi', 'SMO011G0041' => 'smo', 'SMO146G0251' => 'smo', 'SMO160G0004' => 'smo', 'SMO174G0057' => 'smo', 'SMO244G0089' => 'smo', 'SMO296G0011' => 'smo', 'Solyc01g091280.3' => 'sly', 'Solyc05g047610.3' => 'sly', 'Solyc05g047640.3' => 'sly', 'Solyc05g055630.3' => 'sly', 'Solyc10g018160.2' => 'sly', 'Solyc10g084820.2' => 'sly', 'Solyc10g086565.2' => 'sly', 'Sopen01g037030' => 'spe', 'Sopen05g027920' => 'spe', 'Sopen05g034070' => 'spe', 'Sopen10g007260' => 'spe', 'Sopen10g034260' => 'spe', 'Sopen10g035950' => 'spe', 'Sp3g07710' => 'spa', 'Sp4g27420' => 'spa', 'Sp5g02450' => 'spa', 'Sp6g01280' => 'spa', 'Sp6g38480' => 'spa', 'Sp7g20780' => 'spa', 'TAR374G1413' => 'tar', 'TAR623G1777' => 'tar', 'TAR629G2370' => 'tar', 'TAR633G1759' => 'tar', 'TAR636G3387' => 'tar', 'THA.LOC104802447' => 'tha', 'THA.LOC104813916' => 'tha', 'THA.LOC104816423' => 'tha', 'THA.LOC104817246' => 'tha', 'THA.LOC104825895' => 'tha', 'Thecc.01G335200' => 'tca', 'Thecc.01G377400' => 'tca', 'Thecc.03G262200' => 'tca', 'Thecc.05G036800' => 'tca', 'Thecc.10G080500' => 'tca', 'Thecc.10G080800' => 'tca', 'Thhalv10001560m.g' => 'esa', 'Thhalv10006120m.g' => 'esa', 'Thhalv10014375m.g' => 'esa', 'Thhalv10021264m.g' => 'esa', 'Thhalv10028856m.g' => 'esa', 'TPR.G1914' => 'tpr', 'TPR.G4757' => 'tpr', 'TPR.G5595' => 'tpr', 'TWI14G0952' => 'twi', 'TWI14G1307' => 'twi', 'TWI38G2143' => 'twi', 'TWI59G0826' => 'twi', 'TWI77G0527' => 'twi', 'TWI81G0150' => 'twi', 'unitig_21.g21018' => 'ugi', 'unitig_26.g9725' => 'ugi', 'unitig_744.g24653' => 'ugi', 'unitig_749.g13778' => 'ugi', 'unitig_899.g15035' => 'ugi', 'vmacro04296' => 'vma', 'vmacro04852' => 'vma', 'vmacro13404' => 'vma', 'vmacro20169' => 'vma', 'vmacro21014' => 'vma', 'VMungo0331G0237' => 'vmu', 'VMungo0331G0706' => 'vmu', 'VMungo0331G1361' => 'vmu', 'VMungo0331G1489' => 'vmu', 'VMungo0540G1037' => 'vmu', 'VMungo0720G2487' => 'vmu', 'VMungo0720G2721' => 'vmu', 'Zm00001eb086860' => 'zma', 'Zm00001eb104760' => 'zma', 'Zm00001eb148220' => 'zma', 'Zm00001eb259030' => 'zma', 'Zm00001eb289590' => 'zma', 'Zm00001eb420150' => 'zma' ), 'gf_id' => 'HOM05D000968', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000968' ), 'data_identifier' => 'HOM05D000968', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000968', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p31690' => 'bna', 'A03p36040' => 'bna', 'A03p53730' => 'bna', 'A04p01410' => 'bna', 'A05p05420' => 'bna', 'A05p39630' => 'bna', 'A05p39640' => 'bna', 'A09p00970' => 'bna', 'A09p53060' => 'bna', 'A10p31890' => 'bna', 'Aa31LG10G15040' => 'aar', 'Aa31LG1G21090' => 'aar', 'Aa31LG1G26900' => 'aar', 'Aa31LG3G1820' => 'aar', 'Aa31LG5G1100' => 'aar', 'Aa31LG6G4740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2265' => 'aag', 'Actinidia07998' => 'ach', 'Actinidia11266' => 'ach', 'Actinidia12682' => 'ach', 'Actinidia26479' => 'ach', 'Actinidia31406' => 'ach', 'Actinidia32437' => 'ach', 'Actinidia38862' => 'ach', 'Ah.05g174230' => 'amhyb', 'Ah.05g179070' => 'amhyb', 'Ah.05g179090' => 'amhyb', 'Ah.12g059950' => 'amhyb', 'AL3G20480' => 'aly', 'AL4G44520' => 'aly', 'AL5G43110' => 'aly', 'AL6G13890' => 'aly', 'AL6G52620' => 'aly', 'AL7G30830' => 'aly', 'Aqoxy1G00899' => 'aox', 'Aqoxy5G04333' => 'aox', 'Aqoxy7G00641' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3IZ0NN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4EF6AW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W9P8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79GA3M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C43NQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFCU6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G95YVJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCHK29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LU1UG8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX91RN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGB4B1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8DA0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9H7JI' => 'arhy', 'AT3G09320' => 'ath', 'AT3G60800' => 'ath', 'AT4G00840' => 'ath', 'AT4G22750' => 'ath', 'AT5G04270' => 'ath', 'ATR0090G003' => 'atr', 'ATR0559G349' => 'atr', 'ATR0680G261' => 'atr', 'ATR0810G048' => 'atr', 'Atru.chr12.831' => 'acertr', 'Atru.chr5.303' => 'acertr', 'Atru.chr5.748' => 'acertr', 'Atru.chr8.1999' => 'acertr', 'Atru.chr9.1436' => 'acertr', 'AUR62004211' => 'cqu', 'AUR62004548' => 'cqu', 'AUR62013637' => 'cqu', 'AUR62022662' => 'cqu', 'AUR62025777' => 'cqu', 'AUR62042386' => 'cqu', 'BcaB01g02310' => 'bca', 'BcaB01g06062' => 'bca', 'BcaB02g08975' => 'bca', 'BcaB02g08980' => 'bca', 'BcaC01g04228' => 'bca', 'BcaC01g06830' => 'bca', 'BcaC02g10186' => 'bca', 'BcaC02g12214' => 'bca', 'BcaC04g24101' => 'bca', 'BcaC05g29520' => 'bca', 'BcaC05g29661' => 'bca', 'BcaC06g32130' => 'bca', 'BcaC06g32131' => 'bca', 'BcaC07g40601' => 'bca', 'BcaC07g42641' => 'bca', 'BcaNung01038' => 'bca', 'BcaNung01676' => 'bca', 'BcaNung02480' => 'bca', 'BcaNung07376' => 'bca', 'BolC3t16146H' => 'bol', 'BolC3t16637H' => 'bol', 'BolC4t22257H' => 'bol', 'BolC4t24728H' => 'bol', 'BolC5t34517H' => 'bol', 'BolC7t45703H' => 'bol', 'BolC8t51166H' => 'bol', 'BolC9t53038H' => 'bol', 'BolC9t60000H' => 'bol', 'BraA01t01345Z' => 'bra', 'BraA01t01346Z' => 'bra', 'BraA01t01348Z' => 'bra', 'BraA03t12347Z' => 'bra', 'BraA03t12775Z' => 'bra', 'BraA03t14439Z' => 'bra', 'BraA04t15860Z' => 'bra', 'BraA05t19511Z' => 'bra', 'BraA05t22746Z' => 'bra', 'BraA09t35767Z' => 'bra', 'BraA09t40732Z' => 'bra', 'BraA10t45233Z' => 'bra', 'C03p38720' => 'bna', 'C03p43680' => 'bna', 'C04p06350' => 'bna', 'C04p31800' => 'bna', 'C05p58680' => 'bna', 'C07p52110' => 'bna', 'C08p35760' => 'bna', 'C09p01050' => 'bna', 'C09p72600' => 'bna', 'CAN.G106.2' => 'can', 'CAN.G1482.1' => 'can', 'CAN.G324.12' => 'can', 'CAN.G388.20' => 'can', 'CAN.G412.7' => 'can', 'CAN.G694.32' => 'can', 'CAN.G92.12' => 'can', 'CANSAT11G2353' => 'cansat', 'CANSAT21G1398' => 'cansat', 'CANSAT56G2456' => 'cansat', 'CANSAT56G3031' => 'cansat', 'CANSAT56G4539' => 'cansat', 'CARHR083680' => 'chi', 'CARHR171190' => 'chi', 'CARHR209010' => 'chi', 'CARHR229680' => 'chi', 'CARHR249490' => 'chi', 'Carub.0003s0844' => 'cru', 'Carub.0005s2755' => 'cru', 'Carub.0006s0322' => 'cru', 'Carub.0006s3586' => 'cru', 'Carub.0007s1855' => 'cru', 'Ca_07808_v3' => 'car', 'Ca_09535_v3' => 'car', 'Ca_10548_v3' => 'car', 'Ca_19913_v3' => 'car', 'Ca_19916_v3' => 'car', 'Ca_19975_v3' => 'car', 'CBR_g22876' => 'cbr', 'CBR_g22879' => 'cbr', 'CBR_g38491' => 'cbr', 'CBR_g54185' => 'cbr', 'CBR_g54190' => 'cbr', 'Cc02_g11020' => 'ccan', 'Cc02_g23920' => 'ccan', 'Cc02_g39860' => 'ccan', 'Cc02_g39870' => 'ccan', 'Cc03_g06760' => 'ccan', 'Cc06_g02450' => 'ccan', 'Cc09_g09450' => 'ccan', 'CDE02G1959' => 'cde', 'CDE04G0600' => 'cde', 'CDE07G1996' => 'cde', 'CDE07G2078' => 'cde', 'CDE11G0611' => 'cde', 'Cfa001683' => 'cfa', 'Cfa001734' => 'cfa', 'Cfa001737' => 'cfa', 'Cfa003751' => 'cfa', 'Cfa012019' => 'cfa', 'Cfa017353' => 'cfa', 'Cfa017732' => 'cfa', 'Cfa022464' => 'cfa', 'Ciclev10012400m.g' => 'ccl', 'Ciclev10021242m.g' => 'ccl', 'Ciclev10021302m.g' => 'ccl', 'Ciclev10021463m.g' => 'ccl', 'Ciclev10032359m.g' => 'ccl', 'CiPaw.01G081000' => 'cil', 'CiPaw.01G262500' => 'cil', 'CiPaw.01G269800' => 'cil', 'CiPaw.02G168400' => 'cil', 'CiPaw.05G119500' => 'cil', 'CiPaw.11G147300' => 'cil', 'ClCG01G003630' => 'cla', 'ClCG05G000510' => 'cla', 'ClCG05G002300' => 'cla', 'ClCG08G007650' => 'cla', 'ClCG10G021250' => 'cla', 'COL.COLO4_06218' => 'col', 'COL.COLO4_12538' => 'col', 'COL.COLO4_14775' => 'col', 'COL.COLO4_23875' => 'col', 'Cpa.g.sc141.16' => 'cpa', 'Cpa.g.sc169.16' => 'cpa', 'Cpa.g.sc244.4' => 'cpa', 'Cpa.g.sc244.5' => 'cpa', 'Cpa.g.sc29.87' => 'cpa', 'Cpa.g.sc53.115' => 'cpa', 'Cre03.g207502' => 'cre', 'Cre06.g277000' => 'cre', 'Cre09.g394050' => 'cre', 'CsaV3_3G007680' => 'csa', 'CsaV3_3G009710' => 'csa', 'CsaV3_3G034790' => 'csa', 'CsaV3_5G003750' => 'csa', 'CsaV3_6G036620' => 'csa', 'CSS0002288' => 'camsi', 'CSS0011250' => 'camsi', 'CSS0021619' => 'camsi', 'CSS0046701' => 'camsi', 'DCAR_006420' => 'dca', 'DCAR_006865' => 'dca', 'DCAR_008558' => 'dca', 'DCAR_028754' => 'dca', 'DCAR_028755' => 'dca', 'Dinv31218' => 'din', 'Dinv32371' => 'din', 'Dinv34250' => 'din', 'Dinv37156' => 'din', 'Dinv43704' => 'din', 'Duzib093G1811' => 'dzi', 'Duzib106G1622' => 'dzi', 'Duzib114G0504' => 'dzi', 'Duzib128G0338' => 'dzi', 'Duzib128G1577' => 'dzi', 'Duzib133G0104' => 'dzi', 'Duzib133G1080' => 'dzi', 'Duzib138G0324' => 'dzi', 'Duzib138G0394' => 'dzi', 'Duzib205G0122' => 'dzi', 'Duzib268G1020' => 'dzi', 'Duzib268G1359' => 'dzi', 'ECA232G3929' => 'eca', 'ECA236G2210' => 'eca', 'ECA236G2287' => 'eca', 'ECA240G4568' => 'eca', 'ECA247G0894' => 'eca', 'EL10Ac1g00200' => 'bvu', 'EL10Ac1g00886' => 'bvu', 'EL10As1g23091' => 'bvu', 'EL10As1g23092' => 'bvu', 'Eucgr.A01284' => 'egr', 'Eucgr.A01285' => 'egr', 'Eucgr.D02456' => 'egr', 'Eucgr.E00018' => 'egr', 'Eucgr.E01439' => 'egr', 'Eucgr.G02859' => 'egr', 'FAN01G0168' => 'fan', 'FAN01G0453' => 'fan', 'FAN01G2761' => 'fan', 'FAN02G1239' => 'fan', 'FAN03G0645' => 'fan', 'FAN03G2707' => 'fan', 'FAN03G2978' => 'fan', 'FAN04G0227' => 'fan', 'FAN06G0091' => 'fan', 'FAN06G1418' => 'fan', 'FAN06G1512' => 'fan', 'FAN06G1986' => 'fan', 'FAN06G2905' => 'fan', 'FAN06G4325' => 'fan', 'FAN08G0033' => 'fan', 'FAN09G0642' => 'fan', 'FAN10G1763' => 'fan', 'FAN10G2026' => 'fan', 'FAN10G2513' => 'fan', 'FAN10G3402' => 'fan', 'FAN10G3564' => 'fan', 'FAN10G3987' => 'fan', 'FAN13G1490' => 'fan', 'FAN14G5857' => 'fan', 'FAN18G1188' => 'fan', 'FvH4_5g00750' => 'fve', 'FvH4_6g13410' => 'fve', 'FvH4_7g11740' => 'fve', 'FvH4_7g17410' => 'fve', 'FvH4_7g18860' => 'fve', 'Glyma.01G099100' => 'gma', 'Glyma.01G142300' => 'gma', 'Glyma.03G025500' => 'gma', 'Glyma.03G069700' => 'gma', 'Glyma.03G260000' => 'gma', 'Glyma.09G269800' => 'gma', 'Glyma.10G208700' => 'gma', 'Glyma.18G220400' => 'gma', 'Glyma.20G182000' => 'gma', 'Gohir.A01G221726' => 'ghi', 'Gohir.A07G134600' => 'ghi', 'Gohir.A07G146000' => 'ghi', 'Gohir.A08G173900' => 'ghi', 'Gohir.A09G194900' => 'ghi', 'Gohir.A10G204100' => 'ghi', 'Gohir.A11G080600' => 'ghi', 'Gohir.A11G327500' => 'ghi', 'Gohir.A12G101800' => 'ghi', 'Gohir.D01G211200' => 'ghi', 'Gohir.D07G139200' => 'ghi', 'Gohir.D07G152100' => 'ghi', 'Gohir.D08G192600' => 'ghi', 'Gohir.D09G189200' => 'ghi', 'Gohir.D10G212000' => 'ghi', 'Gohir.D11G085200' => 'ghi', 'Gohir.D11G346400' => 'ghi', 'Gohir.D12G104800' => 'ghi', 'Gorai.001G151300' => 'gra', 'Gorai.001G174100' => 'gra', 'Gorai.002G257000' => 'gra', 'Gorai.004G202600' => 'gra', 'Gorai.007G090900' => 'gra', 'Gorai.007G376700' => 'gra', 'Gorai.008G114100' => 'gra', 'Gorai.011G237900' => 'gra', 'GSVIVG01005450001' => 'vvi', 'GSVIVG01016232001' => 'vvi', 'GSVIVG01026157001' => 'vvi', 'GSVIVG01027419001' => 'vvi', 'GSVIVG01027631001' => 'vvi', 'GSVIVG01034143001' => 'vvi', 'HanXRQChr03g0093921' => 'han', 'HanXRQChr04g0120001' => 'han', 'HanXRQChr04g0122561' => 'han', 'HanXRQChr09g0246851' => 'han', 'HanXRQChr10g0293311' => 'han', 'HanXRQChr13g0425231' => 'han', 'HanXRQChr16g0532571' => 'han', 'Haze_09050' => 'cav', 'Haze_15715' => 'cav', 'Haze_15716' => 'cav', 'Haze_16803' => 'cav', 'Haze_16850' => 'cav', 'Hma1.2p1_0301F.1_g118655' => 'hma', 'Hma1.2p1_0309F.1_g120590' => 'hma', 'Hma1.2p1_0936F.1_g238900' => 'hma', 'Hma1.2p1_3552F.1_g336740' => 'hma', 'HPP92_003520' => 'vpl', 'HPP92_006628' => 'vpl', 'HPP92_006645' => 'vpl', 'HPP92_014669' => 'vpl', 'HPP92_015077' => 'vpl', 'Hund16742' => 'sun', 'Hund17022' => 'sun', 'Lalb_Chr02g0152131' => 'lal', 'Lalb_Chr05g0225371' => 'lal', 'Lalb_Chr07g0189841' => 'lal', 'Lalb_Chr07g0192961' => 'lal', 'Lalb_Chr12g0208221' => 'lal', 'Lalb_Chr13g0291211' => 'lal', 'Lalb_Chr13g0291781' => 'lal', 'Lalb_Chr18g0044651' => 'lal', 'Lalb_Chr21g0313731' => 'lal', 'Lj1g0022533' => 'lja', 'Lj2A18T50' => 'lonja', 'Lj2A92G93' => 'lonja', 'Lj3A965T73' => 'lonja', 'Lj3g0000673' => 'lja', 'Lj3g0002666' => 'lja', 'Lj4g0016985' => 'lja', 'Lj5g0003625' => 'lja', 'Lj7A529G36' => 'lonja', 'Lj9A569T49' => 'lonja', 'Lj9A604T63' => 'lonja', 'Lsat_1_v5_gn_3_132060' => 'lsa', 'Lsat_1_v5_gn_4_68941' => 'lsa', 'Lsat_1_v5_gn_5_95580' => 'lsa', 'Lsat_1_v5_gn_7_161' => 'lsa', 'Lsat_1_v5_gn_7_7041' => 'lsa', 'Lsat_1_v5_gn_9_33481' => 'lsa', 'Lsat_1_v5_gn_9_68260' => 'lsa', 'Manes.01G073100' => 'mes', 'Manes.01G266300' => 'mes', 'Manes.02G033300' => 'mes', 'Manes.05G017900' => 'mes', 'Manes.05G046100' => 'mes', 'Manes.08G080900' => 'mes', 'Manes.10G049400' => 'mes', 'Mapoly0009s0186' => 'mpo', 'Mapoly0036s0118' => 'mpo', 'Mapoly0101s0046' => 'mpo', 'MBI04_g30218_MAGBIO' => 'mbi', 'MBI04_g35564_MAGBIO' => 'mbi', 'MBI12_g34011_MAGBIO' => 'mbi', 'MBI14_g04655_MAGBIO' => 'mbi', 'MCO07G653' => 'mco', 'MCO10G173' => 'mco', 'MD01G1087100' => 'mdo', 'MD01G1104200' => 'mdo', 'MD02G1205100' => 'mdo', 'MD04G1079200' => 'mdo', 'MD04G1131400' => 'mdo', 'MD07G1121600' => 'mdo', 'MD07G1157300' => 'mdo', 'MD07G1171000' => 'mdo', 'MD12G1144500' => 'mdo', 'Medtr1g094610' => 'mtr', 'Medtr4g021795' => 'mtr', 'Medtr4g023760' => 'mtr', 'Medtr7g118050' => 'mtr', 'MELO3C005582.2' => 'cme', 'MELO3C005989.2' => 'cme', 'MELO3C006192.2' => 'cme', 'MELO3C009248.2' => 'cme', 'MELO3C019817.2' => 'cme', 'Migut.B01625' => 'egut', 'Migut.B01915' => 'egut', 'Migut.F01721' => 'egut', 'Migut.J00314' => 'egut', 'MSTRG.20742' => 'ama', 'MSTRG.8134' => 'ama', 'Nitab4.5_0000096g0010' => 'nta', 'Nitab4.5_0000202g0030' => 'nta', 'Nitab4.5_0000216g0370' => 'nta', 'Nitab4.5_0000457g0230' => 'nta', 'Nitab4.5_0001702g0170' => 'nta', 'Nitab4.5_0003607g0010' => 'nta', 'Nitab4.5_0004917g0020' => 'nta', 'Nitab4.5_0007059g0010' => 'nta', 'Nitab4.5_0007184g0010' => 'nta', 'Nitab4.5_0007346g0020' => 'nta', 'Nn1g00410' => 'nnu', 'Nn1g01252' => 'nnu', 'Nn2g11168' => 'nnu', 'Nn2g13403' => 'nnu', 'Nn2g13760' => 'nnu', 'Nn4g26380' => 'nnu', 'Oeu000806.2' => 'oeu', 'Oeu005788.1' => 'oeu', 'Oeu006900.3' => 'oeu', 'Oeu007797.1' => 'oeu', 'Oeu011932.1' => 'oeu', 'Oeu022739.1' => 'oeu', 'Oeu037918.1' => 'oeu', 'Oeu055490.2' => 'oeu', 'Os01g0844400' => 'osa', 'Os02g0819100' => 'osa', 'Os03g0804300' => 'osa', 'Os05g0458000' => 'osa', 'Os07g0467800' => 'osa', 'Os12g0602200' => 'osa', 'Peaxi162Scf00013g03444' => 'pax', 'Peaxi162Scf00094g01120' => 'pax', 'Peaxi162Scf00191g01211' => 'pax', 'Peaxi162Scf00238g01110' => 'pax', 'Peaxi162Scf00330g00719' => 'pax', 'Peaxi162Scf00627g00018' => 'pax', 'PGR031G2686' => 'pgr', 'PGR042G0809' => 'pgr', 'PGR142G0193' => 'pgr', 'PGSC0003DMG400011066' => 'stu', 'PGSC0003DMG400012041' => 'stu', 'PGSC0003DMG400013678' => 'stu', 'PGSC0003DMG400023477' => 'stu', 'PGSC0003DMG400025956' => 'stu', 'PGSC0003DMG401019151' => 'stu', 'Phvul.006G116400' => 'pvu', 'Phvul.007G097300' => 'pvu', 'Phvul.010G015000' => 'pvu', 'Phvul.010G083900' => 'pvu', 'Potri.001G117100' => 'ptr', 'Potri.002G147300' => 'ptr', 'Potri.003G115600' => 'ptr', 'Potri.006G087400' => 'ptr', 'Potri.010G226100' => 'ptr', 'Potri.014G069200' => 'ptr', 'Potri.014G104000' => 'ptr', 'Potri.016G100200' => 'ptr', 'Pp3c10_20450' => 'ppa', 'Pp3c1_42400' => 'ppa', 'Pp3c3_24390' => 'ppa', 'Pp3c3_2860' => 'ppa', 'PRCOL_00003193' => 'pco', 'Prupe.2G144500' => 'ppe', 'Prupe.2G195700' => 'ppe', 'Prupe.2G209800' => 'ppe', 'Prupe.5G080000' => 'ppe', 'Prupe.6G257900' => 'ppe', 'Psat3g001160' => 'psa', 'Psat6g181880' => 'psa', 'Psat7g233720' => 'psa', 'PSO063G7587' => 'pso', 'PSO339G2145' => 'pso', 'PSO339G3369' => 'pso', 'PSO478G2747' => 'pso', 'PSO513G0140' => 'pso', 'PSO782G1614' => 'pso', 'PSO782G4889' => 'pso', 'PSO782G5485' => 'pso', 'PSO801G0241' => 'pso', 'QL07p048854' => 'qlo', 'QL08p046745' => 'qlo', 'QL08p052606' => 'qlo', 'QL08p053414' => 'qlo', 'QL08p054868' => 'qlo', 'RcHm_v2.0_Chr1g0350251' => 'rch', 'RcHm_v2.0_Chr1g0360851' => 'rch', 'RcHm_v2.0_Chr1g0362791' => 'rch', 'RcHm_v2.0_Chr3g0466281' => 'rch', 'RcHm_v2.0_Chr7g0201481' => 'rch', 'Rhsim01G0148600' => 'rsi', 'Rhsim05G0194400' => 'rsi', 'Rhsim07G0000700' => 'rsi', 'Rhsim07G0000800' => 'rsi', 'Rhsim07G0027900' => 'rsi', 'Rhsim09G0149500' => 'rsi', 'RhsimUnG0186900' => 'rsi', 'Sabra01G0089900' => 'sbr', 'Sabra02G0114700' => 'sbr', 'Sabra02G0116300' => 'sbr', 'Sabra03G0080100' => 'sbr', 'Sabra08G0024300' => 'sbr', 'Sabra10G0174300' => 'sbr', 'Sabra14G0048900' => 'sbr', 'Sabra14G0076500' => 'sbr', 'SalBow5G2513' => 'sbo', 'Sc01g0002300' => 'sci', 'Sc01g0004450' => 'sci', 'Sc06g0001680' => 'sci', 'Sc23g0003580' => 'sci', 'Sed0000913' => 'sed', 'Sed0001655' => 'sed', 'Sed0007745' => 'sed', 'Sed0010951' => 'sed', 'Sed0017599' => 'sed', 'Sed0021405' => 'sed', 'Sed0022810' => 'sed', 'SEGI_07099' => 'sgi', 'SEGI_11931' => 'sgi', 'SEGI_13187' => 'sgi', 'SEGI_29958' => 'sgi', 'SEGI_36351' => 'sgi', 'SGA_v2.0_scaffold126G33770' => 'sas', 'SGA_v2.0_scaffold153G37003' => 'sas', 'SGA_v2.0_scaffold2G01359' => 'sas', 'SGA_v2.0_scaffold5G03064' => 'sas', 'SGA_v2.0_scaffold95G28903' => 'sas', 'SHI12701' => 'shi', 'SHI26410' => 'shi', 'SHI38997' => 'shi', 'SHI53759' => 'shi', 'SHI53886' => 'shi', 'SHI54714' => 'shi', 'SMO011G0041' => 'smo', 'SMO146G0251' => 'smo', 'SMO160G0004' => 'smo', 'SMO174G0057' => 'smo', 'SMO244G0089' => 'smo', 'SMO296G0011' => 'smo', 'Solyc01g091280.3' => 'sly', 'Solyc05g047610.3' => 'sly', 'Solyc05g047640.3' => 'sly', 'Solyc05g055630.3' => 'sly', 'Solyc10g018160.2' => 'sly', 'Solyc10g084820.2' => 'sly', 'Solyc10g086565.2' => 'sly', 'Sopen01g037030' => 'spe', 'Sopen05g027920' => 'spe', 'Sopen05g034070' => 'spe', 'Sopen10g007260' => 'spe', 'Sopen10g034260' => 'spe', 'Sopen10g035950' => 'spe', 'Sp3g07710' => 'spa', 'Sp4g27420' => 'spa', 'Sp5g02450' => 'spa', 'Sp6g01280' => 'spa', 'Sp6g38480' => 'spa', 'Sp7g20780' => 'spa', 'TAR374G1413' => 'tar', 'TAR623G1777' => 'tar', 'TAR629G2370' => 'tar', 'TAR633G1759' => 'tar', 'TAR636G3387' => 'tar', 'THA.LOC104802447' => 'tha', 'THA.LOC104813916' => 'tha', 'THA.LOC104816423' => 'tha', 'THA.LOC104817246' => 'tha', 'THA.LOC104825895' => 'tha', 'Thecc.01G335200' => 'tca', 'Thecc.01G377400' => 'tca', 'Thecc.03G262200' => 'tca', 'Thecc.05G036800' => 'tca', 'Thecc.10G080500' => 'tca', 'Thecc.10G080800' => 'tca', 'Thhalv10001560m.g' => 'esa', 'Thhalv10006120m.g' => 'esa', 'Thhalv10014375m.g' => 'esa', 'Thhalv10021264m.g' => 'esa', 'Thhalv10028856m.g' => 'esa', 'TPR.G1914' => 'tpr', 'TPR.G4757' => 'tpr', 'TPR.G5595' => 'tpr', 'TWI14G0952' => 'twi', 'TWI14G1307' => 'twi', 'TWI38G2143' => 'twi', 'TWI59G0826' => 'twi', 'TWI77G0527' => 'twi', 'TWI81G0150' => 'twi', 'unitig_21.g21018' => 'ugi', 'unitig_26.g9725' => 'ugi', 'unitig_744.g24653' => 'ugi', 'unitig_749.g13778' => 'ugi', 'unitig_899.g15035' => 'ugi', 'vmacro04296' => 'vma', 'vmacro04852' => 'vma', 'vmacro13404' => 'vma', 'vmacro20169' => 'vma', 'vmacro21014' => 'vma', 'VMungo0331G0237' => 'vmu', 'VMungo0331G0706' => 'vmu', 'VMungo0331G1361' => 'vmu', 'VMungo0331G1489' => 'vmu', 'VMungo0540G1037' => 'vmu', 'VMungo0720G2487' => 'vmu', 'VMungo0720G2721' => 'vmu', 'Zm00001eb086860' => 'zma', 'Zm00001eb104760' => 'zma', 'Zm00001eb148220' => 'zma', 'Zm00001eb259030' => 'zma', 'Zm00001eb289590' => 'zma', 'Zm00001eb420150' => 'zma' ) $gf_id = 'HOM05D000968' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000968' ) $data_identifier = 'HOM05D000968' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 19, 'bol' => (int) 9, 'bra' => (int) 12, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 5, 'ccan' => (int) 7, 'cde' => (int) 5, 'cfa' => (int) 8, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 4, 'dca' => (int) 5, 'din' => (int) 5, 'dzi' => (int) 12, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 25, 'fve' => (int) 5, 'gma' => (int) 9, 'ghi' => (int) 18, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 7, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 5, 'sun' => (int) 2, 'lal' => (int) 9, 'lja' => (int) 5, 'lonja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 9, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 2, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 3, 'stu' => (int) 6, 'pvu' => (int) 4, 'ptr' => (int) 8, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 3, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 1, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 5, 'sas' => (int) 5, 'shi' => (int) 6, 'smo' => (int) 6, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 3, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420150' $species_info = array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ) $local_species = 'sly' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000968', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p31690' => 'bna', 'A03p36040' => 'bna', 'A03p53730' => 'bna', 'A04p01410' => 'bna', 'A05p05420' => 'bna', 'A05p39630' => 'bna', 'A05p39640' => 'bna', 'A09p00970' => 'bna', 'A09p53060' => 'bna', 'A10p31890' => 'bna', 'Aa31LG10G15040' => 'aar', 'Aa31LG1G21090' => 'aar', 'Aa31LG1G26900' => 'aar', 'Aa31LG3G1820' => 'aar', 'Aa31LG5G1100' => 'aar', 'Aa31LG6G4740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2265' => 'aag', 'Actinidia07998' => 'ach', 'Actinidia11266' => 'ach', 'Actinidia12682' => 'ach', 'Actinidia26479' => 'ach', 'Actinidia31406' => 'ach', 'Actinidia32437' => 'ach', 'Actinidia38862' => 'ach', 'Ah.05g174230' => 'amhyb', 'Ah.05g179070' => 'amhyb', 'Ah.05g179090' => 'amhyb', 'Ah.12g059950' => 'amhyb', 'AL3G20480' => 'aly', 'AL4G44520' => 'aly', 'AL5G43110' => 'aly', 'AL6G13890' => 'aly', 'AL6G52620' => 'aly', 'AL7G30830' => 'aly', 'Aqoxy1G00899' => 'aox', 'Aqoxy5G04333' => 'aox', 'Aqoxy7G00641' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3IZ0NN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4EF6AW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W9P8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79GA3M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C43NQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFCU6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G95YVJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCHK29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LU1UG8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX91RN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGB4B1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8DA0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9H7JI' => 'arhy', 'AT3G09320' => 'ath', 'AT3G60800' => 'ath', 'AT4G00840' => 'ath', 'AT4G22750' => 'ath', 'AT5G04270' => 'ath', 'ATR0090G003' => 'atr', 'ATR0559G349' => 'atr', 'ATR0680G261' => 'atr', 'ATR0810G048' => 'atr', 'Atru.chr12.831' => 'acertr', 'Atru.chr5.303' => 'acertr', 'Atru.chr5.748' => 'acertr', 'Atru.chr8.1999' => 'acertr', 'Atru.chr9.1436' => 'acertr', 'AUR62004211' => 'cqu', 'AUR62004548' => 'cqu', 'AUR62013637' => 'cqu', 'AUR62022662' => 'cqu', 'AUR62025777' => 'cqu', 'AUR62042386' => 'cqu', 'BcaB01g02310' => 'bca', 'BcaB01g06062' => 'bca', 'BcaB02g08975' => 'bca', 'BcaB02g08980' => 'bca', 'BcaC01g04228' => 'bca', 'BcaC01g06830' => 'bca', 'BcaC02g10186' => 'bca', 'BcaC02g12214' => 'bca', 'BcaC04g24101' => 'bca', 'BcaC05g29520' => 'bca', 'BcaC05g29661' => 'bca', 'BcaC06g32130' => 'bca', 'BcaC06g32131' => 'bca', 'BcaC07g40601' => 'bca', 'BcaC07g42641' => 'bca', 'BcaNung01038' => 'bca', 'BcaNung01676' => 'bca', 'BcaNung02480' => 'bca', 'BcaNung07376' => 'bca', 'BolC3t16146H' => 'bol', 'BolC3t16637H' => 'bol', 'BolC4t22257H' => 'bol', 'BolC4t24728H' => 'bol', 'BolC5t34517H' => 'bol', 'BolC7t45703H' => 'bol', 'BolC8t51166H' => 'bol', 'BolC9t53038H' => 'bol', 'BolC9t60000H' => 'bol', 'BraA01t01345Z' => 'bra', 'BraA01t01346Z' => 'bra', 'BraA01t01348Z' => 'bra', 'BraA03t12347Z' => 'bra', 'BraA03t12775Z' => 'bra', 'BraA03t14439Z' => 'bra', 'BraA04t15860Z' => 'bra', 'BraA05t19511Z' => 'bra', 'BraA05t22746Z' => 'bra', 'BraA09t35767Z' => 'bra', 'BraA09t40732Z' => 'bra', 'BraA10t45233Z' => 'bra', 'C03p38720' => 'bna', 'C03p43680' => 'bna', 'C04p06350' => 'bna', 'C04p31800' => 'bna', 'C05p58680' => 'bna', 'C07p52110' => 'bna', 'C08p35760' => 'bna', 'C09p01050' => 'bna', 'C09p72600' => 'bna', 'CAN.G106.2' => 'can', 'CAN.G1482.1' => 'can', 'CAN.G324.12' => 'can', 'CAN.G388.20' => 'can', 'CAN.G412.7' => 'can', 'CAN.G694.32' => 'can', 'CAN.G92.12' => 'can', 'CANSAT11G2353' => 'cansat', 'CANSAT21G1398' => 'cansat', 'CANSAT56G2456' => 'cansat', 'CANSAT56G3031' => 'cansat', 'CANSAT56G4539' => 'cansat', 'CARHR083680' => 'chi', 'CARHR171190' => 'chi', 'CARHR209010' => 'chi', 'CARHR229680' => 'chi', 'CARHR249490' => 'chi', 'Carub.0003s0844' => 'cru', 'Carub.0005s2755' => 'cru', 'Carub.0006s0322' => 'cru', 'Carub.0006s3586' => 'cru', 'Carub.0007s1855' => 'cru', 'Ca_07808_v3' => 'car', 'Ca_09535_v3' => 'car', 'Ca_10548_v3' => 'car', 'Ca_19913_v3' => 'car', 'Ca_19916_v3' => 'car', 'Ca_19975_v3' => 'car', 'CBR_g22876' => 'cbr', 'CBR_g22879' => 'cbr', 'CBR_g38491' => 'cbr', 'CBR_g54185' => 'cbr', 'CBR_g54190' => 'cbr', 'Cc02_g11020' => 'ccan', 'Cc02_g23920' => 'ccan', 'Cc02_g39860' => 'ccan', 'Cc02_g39870' => 'ccan', 'Cc03_g06760' => 'ccan', 'Cc06_g02450' => 'ccan', 'Cc09_g09450' => 'ccan', 'CDE02G1959' => 'cde', 'CDE04G0600' => 'cde', 'CDE07G1996' => 'cde', 'CDE07G2078' => 'cde', 'CDE11G0611' => 'cde', 'Cfa001683' => 'cfa', 'Cfa001734' => 'cfa', 'Cfa001737' => 'cfa', 'Cfa003751' => 'cfa', 'Cfa012019' => 'cfa', 'Cfa017353' => 'cfa', 'Cfa017732' => 'cfa', 'Cfa022464' => 'cfa', 'Ciclev10012400m.g' => 'ccl', 'Ciclev10021242m.g' => 'ccl', 'Ciclev10021302m.g' => 'ccl', 'Ciclev10021463m.g' => 'ccl', 'Ciclev10032359m.g' => 'ccl', 'CiPaw.01G081000' => 'cil', 'CiPaw.01G262500' => 'cil', 'CiPaw.01G269800' => 'cil', 'CiPaw.02G168400' => 'cil', 'CiPaw.05G119500' => 'cil', 'CiPaw.11G147300' => 'cil', 'ClCG01G003630' => 'cla', 'ClCG05G000510' => 'cla', 'ClCG05G002300' => 'cla', 'ClCG08G007650' => 'cla', 'ClCG10G021250' => 'cla', 'COL.COLO4_06218' => 'col', 'COL.COLO4_12538' => 'col', 'COL.COLO4_14775' => 'col', 'COL.COLO4_23875' => 'col', 'Cpa.g.sc141.16' => 'cpa', 'Cpa.g.sc169.16' => 'cpa', 'Cpa.g.sc244.4' => 'cpa', 'Cpa.g.sc244.5' => 'cpa', 'Cpa.g.sc29.87' => 'cpa', 'Cpa.g.sc53.115' => 'cpa', 'Cre03.g207502' => 'cre', 'Cre06.g277000' => 'cre', 'Cre09.g394050' => 'cre', 'CsaV3_3G007680' => 'csa', 'CsaV3_3G009710' => 'csa', 'CsaV3_3G034790' => 'csa', 'CsaV3_5G003750' => 'csa', 'CsaV3_6G036620' => 'csa', 'CSS0002288' => 'camsi', 'CSS0011250' => 'camsi', 'CSS0021619' => 'camsi', 'CSS0046701' => 'camsi', 'DCAR_006420' => 'dca', 'DCAR_006865' => 'dca', 'DCAR_008558' => 'dca', 'DCAR_028754' => 'dca', 'DCAR_028755' => 'dca', 'Dinv31218' => 'din', 'Dinv32371' => 'din', 'Dinv34250' => 'din', 'Dinv37156' => 'din', 'Dinv43704' => 'din', 'Duzib093G1811' => 'dzi', 'Duzib106G1622' => 'dzi', 'Duzib114G0504' => 'dzi', 'Duzib128G0338' => 'dzi', 'Duzib128G1577' => 'dzi', 'Duzib133G0104' => 'dzi', 'Duzib133G1080' => 'dzi', 'Duzib138G0324' => 'dzi', 'Duzib138G0394' => 'dzi', 'Duzib205G0122' => 'dzi', 'Duzib268G1020' => 'dzi', 'Duzib268G1359' => 'dzi', 'ECA232G3929' => 'eca', 'ECA236G2210' => 'eca', 'ECA236G2287' => 'eca', 'ECA240G4568' => 'eca', 'ECA247G0894' => 'eca', 'EL10Ac1g00200' => 'bvu', 'EL10Ac1g00886' => 'bvu', 'EL10As1g23091' => 'bvu', 'EL10As1g23092' => 'bvu', 'Eucgr.A01284' => 'egr', 'Eucgr.A01285' => 'egr', 'Eucgr.D02456' => 'egr', 'Eucgr.E00018' => 'egr', 'Eucgr.E01439' => 'egr', 'Eucgr.G02859' => 'egr', 'FAN01G0168' => 'fan', 'FAN01G0453' => 'fan', 'FAN01G2761' => 'fan', 'FAN02G1239' => 'fan', 'FAN03G0645' => 'fan', 'FAN03G2707' => 'fan', 'FAN03G2978' => 'fan', 'FAN04G0227' => 'fan', 'FAN06G0091' => 'fan', 'FAN06G1418' => 'fan', 'FAN06G1512' => 'fan', 'FAN06G1986' => 'fan', 'FAN06G2905' => 'fan', 'FAN06G4325' => 'fan', 'FAN08G0033' => 'fan', 'FAN09G0642' => 'fan', 'FAN10G1763' => 'fan', 'FAN10G2026' => 'fan', 'FAN10G2513' => 'fan', 'FAN10G3402' => 'fan', 'FAN10G3564' => 'fan', 'FAN10G3987' => 'fan', 'FAN13G1490' => 'fan', 'FAN14G5857' => 'fan', 'FAN18G1188' => 'fan', 'FvH4_5g00750' => 'fve', 'FvH4_6g13410' => 'fve', 'FvH4_7g11740' => 'fve', 'FvH4_7g17410' => 'fve', 'FvH4_7g18860' => 'fve', 'Glyma.01G099100' => 'gma', 'Glyma.01G142300' => 'gma', 'Glyma.03G025500' => 'gma', 'Glyma.03G069700' => 'gma', 'Glyma.03G260000' => 'gma', 'Glyma.09G269800' => 'gma', 'Glyma.10G208700' => 'gma', 'Glyma.18G220400' => 'gma', 'Glyma.20G182000' => 'gma', 'Gohir.A01G221726' => 'ghi', 'Gohir.A07G134600' => 'ghi', 'Gohir.A07G146000' => 'ghi', 'Gohir.A08G173900' => 'ghi', 'Gohir.A09G194900' => 'ghi', 'Gohir.A10G204100' => 'ghi', 'Gohir.A11G080600' => 'ghi', 'Gohir.A11G327500' => 'ghi', 'Gohir.A12G101800' => 'ghi', 'Gohir.D01G211200' => 'ghi', 'Gohir.D07G139200' => 'ghi', 'Gohir.D07G152100' => 'ghi', 'Gohir.D08G192600' => 'ghi', 'Gohir.D09G189200' => 'ghi', 'Gohir.D10G212000' => 'ghi', 'Gohir.D11G085200' => 'ghi', 'Gohir.D11G346400' => 'ghi', 'Gohir.D12G104800' => 'ghi', 'Gorai.001G151300' => 'gra', 'Gorai.001G174100' => 'gra', 'Gorai.002G257000' => 'gra', 'Gorai.004G202600' => 'gra', 'Gorai.007G090900' => 'gra', 'Gorai.007G376700' => 'gra', 'Gorai.008G114100' => 'gra', 'Gorai.011G237900' => 'gra', 'GSVIVG01005450001' => 'vvi', 'GSVIVG01016232001' => 'vvi', 'GSVIVG01026157001' => 'vvi', 'GSVIVG01027419001' => 'vvi', 'GSVIVG01027631001' => 'vvi', 'GSVIVG01034143001' => 'vvi', 'HanXRQChr03g0093921' => 'han', 'HanXRQChr04g0120001' => 'han', 'HanXRQChr04g0122561' => 'han', 'HanXRQChr09g0246851' => 'han', 'HanXRQChr10g0293311' => 'han', 'HanXRQChr13g0425231' => 'han', 'HanXRQChr16g0532571' => 'han', 'Haze_09050' => 'cav', 'Haze_15715' => 'cav', 'Haze_15716' => 'cav', 'Haze_16803' => 'cav', 'Haze_16850' => 'cav', 'Hma1.2p1_0301F.1_g118655' => 'hma', 'Hma1.2p1_0309F.1_g120590' => 'hma', 'Hma1.2p1_0936F.1_g238900' => 'hma', 'Hma1.2p1_3552F.1_g336740' => 'hma', 'HPP92_003520' => 'vpl', 'HPP92_006628' => 'vpl', 'HPP92_006645' => 'vpl', 'HPP92_014669' => 'vpl', 'HPP92_015077' => 'vpl', 'Hund16742' => 'sun', 'Hund17022' => 'sun', 'Lalb_Chr02g0152131' => 'lal', 'Lalb_Chr05g0225371' => 'lal', 'Lalb_Chr07g0189841' => 'lal', 'Lalb_Chr07g0192961' => 'lal', 'Lalb_Chr12g0208221' => 'lal', 'Lalb_Chr13g0291211' => 'lal', 'Lalb_Chr13g0291781' => 'lal', 'Lalb_Chr18g0044651' => 'lal', 'Lalb_Chr21g0313731' => 'lal', 'Lj1g0022533' => 'lja', 'Lj2A18T50' => 'lonja', 'Lj2A92G93' => 'lonja', 'Lj3A965T73' => 'lonja', 'Lj3g0000673' => 'lja', 'Lj3g0002666' => 'lja', 'Lj4g0016985' => 'lja', 'Lj5g0003625' => 'lja', 'Lj7A529G36' => 'lonja', 'Lj9A569T49' => 'lonja', 'Lj9A604T63' => 'lonja', 'Lsat_1_v5_gn_3_132060' => 'lsa', 'Lsat_1_v5_gn_4_68941' => 'lsa', 'Lsat_1_v5_gn_5_95580' => 'lsa', 'Lsat_1_v5_gn_7_161' => 'lsa', 'Lsat_1_v5_gn_7_7041' => 'lsa', 'Lsat_1_v5_gn_9_33481' => 'lsa', 'Lsat_1_v5_gn_9_68260' => 'lsa', 'Manes.01G073100' => 'mes', 'Manes.01G266300' => 'mes', 'Manes.02G033300' => 'mes', 'Manes.05G017900' => 'mes', 'Manes.05G046100' => 'mes', 'Manes.08G080900' => 'mes', 'Manes.10G049400' => 'mes', 'Mapoly0009s0186' => 'mpo', 'Mapoly0036s0118' => 'mpo', 'Mapoly0101s0046' => 'mpo', 'MBI04_g30218_MAGBIO' => 'mbi', 'MBI04_g35564_MAGBIO' => 'mbi', 'MBI12_g34011_MAGBIO' => 'mbi', 'MBI14_g04655_MAGBIO' => 'mbi', 'MCO07G653' => 'mco', 'MCO10G173' => 'mco', 'MD01G1087100' => 'mdo', 'MD01G1104200' => 'mdo', 'MD02G1205100' => 'mdo', 'MD04G1079200' => 'mdo', 'MD04G1131400' => 'mdo', 'MD07G1121600' => 'mdo', 'MD07G1157300' => 'mdo', 'MD07G1171000' => 'mdo', 'MD12G1144500' => 'mdo', 'Medtr1g094610' => 'mtr', 'Medtr4g021795' => 'mtr', 'Medtr4g023760' => 'mtr', 'Medtr7g118050' => 'mtr', 'MELO3C005582.2' => 'cme', 'MELO3C005989.2' => 'cme', 'MELO3C006192.2' => 'cme', 'MELO3C009248.2' => 'cme', 'MELO3C019817.2' => 'cme', 'Migut.B01625' => 'egut', 'Migut.B01915' => 'egut', 'Migut.F01721' => 'egut', 'Migut.J00314' => 'egut', 'MSTRG.20742' => 'ama', 'MSTRG.8134' => 'ama', 'Nitab4.5_0000096g0010' => 'nta', 'Nitab4.5_0000202g0030' => 'nta', 'Nitab4.5_0000216g0370' => 'nta', 'Nitab4.5_0000457g0230' => 'nta', 'Nitab4.5_0001702g0170' => 'nta', 'Nitab4.5_0003607g0010' => 'nta', 'Nitab4.5_0004917g0020' => 'nta', 'Nitab4.5_0007059g0010' => 'nta', 'Nitab4.5_0007184g0010' => 'nta', 'Nitab4.5_0007346g0020' => 'nta', 'Nn1g00410' => 'nnu', 'Nn1g01252' => 'nnu', 'Nn2g11168' => 'nnu', 'Nn2g13403' => 'nnu', 'Nn2g13760' => 'nnu', 'Nn4g26380' => 'nnu', 'Oeu000806.2' => 'oeu', 'Oeu005788.1' => 'oeu', 'Oeu006900.3' => 'oeu', 'Oeu007797.1' => 'oeu', 'Oeu011932.1' => 'oeu', 'Oeu022739.1' => 'oeu', 'Oeu037918.1' => 'oeu', 'Oeu055490.2' => 'oeu', 'Os01g0844400' => 'osa', 'Os02g0819100' => 'osa', 'Os03g0804300' => 'osa', 'Os05g0458000' => 'osa', 'Os07g0467800' => 'osa', 'Os12g0602200' => 'osa', 'Peaxi162Scf00013g03444' => 'pax', 'Peaxi162Scf00094g01120' => 'pax', 'Peaxi162Scf00191g01211' => 'pax', 'Peaxi162Scf00238g01110' => 'pax', 'Peaxi162Scf00330g00719' => 'pax', 'Peaxi162Scf00627g00018' => 'pax', 'PGR031G2686' => 'pgr', 'PGR042G0809' => 'pgr', 'PGR142G0193' => 'pgr', 'PGSC0003DMG400011066' => 'stu', 'PGSC0003DMG400012041' => 'stu', 'PGSC0003DMG400013678' => 'stu', 'PGSC0003DMG400023477' => 'stu', 'PGSC0003DMG400025956' => 'stu', 'PGSC0003DMG401019151' => 'stu', 'Phvul.006G116400' => 'pvu', 'Phvul.007G097300' => 'pvu', 'Phvul.010G015000' => 'pvu', 'Phvul.010G083900' => 'pvu', 'Potri.001G117100' => 'ptr', 'Potri.002G147300' => 'ptr', 'Potri.003G115600' => 'ptr', 'Potri.006G087400' => 'ptr', 'Potri.010G226100' => 'ptr', 'Potri.014G069200' => 'ptr', 'Potri.014G104000' => 'ptr', 'Potri.016G100200' => 'ptr', 'Pp3c10_20450' => 'ppa', 'Pp3c1_42400' => 'ppa', 'Pp3c3_24390' => 'ppa', 'Pp3c3_2860' => 'ppa', 'PRCOL_00003193' => 'pco', 'Prupe.2G144500' => 'ppe', 'Prupe.2G195700' => 'ppe', 'Prupe.2G209800' => 'ppe', 'Prupe.5G080000' => 'ppe', 'Prupe.6G257900' => 'ppe', 'Psat3g001160' => 'psa', 'Psat6g181880' => 'psa', 'Psat7g233720' => 'psa', 'PSO063G7587' => 'pso', 'PSO339G2145' => 'pso', 'PSO339G3369' => 'pso', 'PSO478G2747' => 'pso', 'PSO513G0140' => 'pso', 'PSO782G1614' => 'pso', 'PSO782G4889' => 'pso', 'PSO782G5485' => 'pso', 'PSO801G0241' => 'pso', 'QL07p048854' => 'qlo', 'QL08p046745' => 'qlo', 'QL08p052606' => 'qlo', 'QL08p053414' => 'qlo', 'QL08p054868' => 'qlo', 'RcHm_v2.0_Chr1g0350251' => 'rch', 'RcHm_v2.0_Chr1g0360851' => 'rch', 'RcHm_v2.0_Chr1g0362791' => 'rch', 'RcHm_v2.0_Chr3g0466281' => 'rch', 'RcHm_v2.0_Chr7g0201481' => 'rch', 'Rhsim01G0148600' => 'rsi', 'Rhsim05G0194400' => 'rsi', 'Rhsim07G0000700' => 'rsi', 'Rhsim07G0000800' => 'rsi', 'Rhsim07G0027900' => 'rsi', 'Rhsim09G0149500' => 'rsi', 'RhsimUnG0186900' => 'rsi', 'Sabra01G0089900' => 'sbr', 'Sabra02G0114700' => 'sbr', 'Sabra02G0116300' => 'sbr', 'Sabra03G0080100' => 'sbr', 'Sabra08G0024300' => 'sbr', 'Sabra10G0174300' => 'sbr', 'Sabra14G0048900' => 'sbr', 'Sabra14G0076500' => 'sbr', 'SalBow5G2513' => 'sbo', 'Sc01g0002300' => 'sci', 'Sc01g0004450' => 'sci', 'Sc06g0001680' => 'sci', 'Sc23g0003580' => 'sci', 'Sed0000913' => 'sed', 'Sed0001655' => 'sed', 'Sed0007745' => 'sed', 'Sed0010951' => 'sed', 'Sed0017599' => 'sed', 'Sed0021405' => 'sed', 'Sed0022810' => 'sed', 'SEGI_07099' => 'sgi', 'SEGI_11931' => 'sgi', 'SEGI_13187' => 'sgi', 'SEGI_29958' => 'sgi', 'SEGI_36351' => 'sgi', 'SGA_v2.0_scaffold126G33770' => 'sas', 'SGA_v2.0_scaffold153G37003' => 'sas', 'SGA_v2.0_scaffold2G01359' => 'sas', 'SGA_v2.0_scaffold5G03064' => 'sas', 'SGA_v2.0_scaffold95G28903' => 'sas', 'SHI12701' => 'shi', 'SHI26410' => 'shi', 'SHI38997' => 'shi', 'SHI53759' => 'shi', 'SHI53886' => 'shi', 'SHI54714' => 'shi', 'SMO011G0041' => 'smo', 'SMO146G0251' => 'smo', 'SMO160G0004' => 'smo', 'SMO174G0057' => 'smo', 'SMO244G0089' => 'smo', 'SMO296G0011' => 'smo', 'Solyc01g091280.3' => 'sly', 'Solyc05g047610.3' => 'sly', 'Solyc05g047640.3' => 'sly', 'Solyc05g055630.3' => 'sly', 'Solyc10g018160.2' => 'sly', 'Solyc10g084820.2' => 'sly', 'Solyc10g086565.2' => 'sly', 'Sopen01g037030' => 'spe', 'Sopen05g027920' => 'spe', 'Sopen05g034070' => 'spe', 'Sopen10g007260' => 'spe', 'Sopen10g034260' => 'spe', 'Sopen10g035950' => 'spe', 'Sp3g07710' => 'spa', 'Sp4g27420' => 'spa', 'Sp5g02450' => 'spa', 'Sp6g01280' => 'spa', 'Sp6g38480' => 'spa', 'Sp7g20780' => 'spa', 'TAR374G1413' => 'tar', 'TAR623G1777' => 'tar', 'TAR629G2370' => 'tar', 'TAR633G1759' => 'tar', 'TAR636G3387' => 'tar', 'THA.LOC104802447' => 'tha', 'THA.LOC104813916' => 'tha', 'THA.LOC104816423' => 'tha', 'THA.LOC104817246' => 'tha', 'THA.LOC104825895' => 'tha', 'Thecc.01G335200' => 'tca', 'Thecc.01G377400' => 'tca', 'Thecc.03G262200' => 'tca', 'Thecc.05G036800' => 'tca', 'Thecc.10G080500' => 'tca', 'Thecc.10G080800' => 'tca', 'Thhalv10001560m.g' => 'esa', 'Thhalv10006120m.g' => 'esa', 'Thhalv10014375m.g' => 'esa', 'Thhalv10021264m.g' => 'esa', 'Thhalv10028856m.g' => 'esa', 'TPR.G1914' => 'tpr', 'TPR.G4757' => 'tpr', 'TPR.G5595' => 'tpr', 'TWI14G0952' => 'twi', 'TWI14G1307' => 'twi', 'TWI38G2143' => 'twi', 'TWI59G0826' => 'twi', 'TWI77G0527' => 'twi', 'TWI81G0150' => 'twi', 'unitig_21.g21018' => 'ugi', 'unitig_26.g9725' => 'ugi', 'unitig_744.g24653' => 'ugi', 'unitig_749.g13778' => 'ugi', 'unitig_899.g15035' => 'ugi', 'vmacro04296' => 'vma', 'vmacro04852' => 'vma', 'vmacro13404' => 'vma', 'vmacro20169' => 'vma', 'vmacro21014' => 'vma', 'VMungo0331G0237' => 'vmu', 'VMungo0331G0706' => 'vmu', 'VMungo0331G1361' => 'vmu', 'VMungo0331G1489' => 'vmu', 'VMungo0540G1037' => 'vmu', 'VMungo0720G2487' => 'vmu', 'VMungo0720G2721' => 'vmu', 'Zm00001eb086860' => 'zma', 'Zm00001eb104760' => 'zma', 'Zm00001eb148220' => 'zma', 'Zm00001eb259030' => 'zma', 'Zm00001eb289590' => 'zma', 'Zm00001eb420150' => 'zma' ), 'gf_id' => 'HOM05D000968', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000968' ), 'data_identifier' => 'HOM05D000968', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000968', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p31690' => 'bna', 'A03p36040' => 'bna', 'A03p53730' => 'bna', 'A04p01410' => 'bna', 'A05p05420' => 'bna', 'A05p39630' => 'bna', 'A05p39640' => 'bna', 'A09p00970' => 'bna', 'A09p53060' => 'bna', 'A10p31890' => 'bna', 'Aa31LG10G15040' => 'aar', 'Aa31LG1G21090' => 'aar', 'Aa31LG1G26900' => 'aar', 'Aa31LG3G1820' => 'aar', 'Aa31LG5G1100' => 'aar', 'Aa31LG6G4740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2265' => 'aag', 'Actinidia07998' => 'ach', 'Actinidia11266' => 'ach', 'Actinidia12682' => 'ach', 'Actinidia26479' => 'ach', 'Actinidia31406' => 'ach', 'Actinidia32437' => 'ach', 'Actinidia38862' => 'ach', 'Ah.05g174230' => 'amhyb', 'Ah.05g179070' => 'amhyb', 'Ah.05g179090' => 'amhyb', 'Ah.12g059950' => 'amhyb', 'AL3G20480' => 'aly', 'AL4G44520' => 'aly', 'AL5G43110' => 'aly', 'AL6G13890' => 'aly', 'AL6G52620' => 'aly', 'AL7G30830' => 'aly', 'Aqoxy1G00899' => 'aox', 'Aqoxy5G04333' => 'aox', 'Aqoxy7G00641' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3IZ0NN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4EF6AW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W9P8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79GA3M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C43NQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFCU6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G95YVJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCHK29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LU1UG8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX91RN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGB4B1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8DA0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9H7JI' => 'arhy', 'AT3G09320' => 'ath', 'AT3G60800' => 'ath', 'AT4G00840' => 'ath', 'AT4G22750' => 'ath', 'AT5G04270' => 'ath', 'ATR0090G003' => 'atr', 'ATR0559G349' => 'atr', 'ATR0680G261' => 'atr', 'ATR0810G048' => 'atr', 'Atru.chr12.831' => 'acertr', 'Atru.chr5.303' => 'acertr', 'Atru.chr5.748' => 'acertr', 'Atru.chr8.1999' => 'acertr', 'Atru.chr9.1436' => 'acertr', 'AUR62004211' => 'cqu', 'AUR62004548' => 'cqu', 'AUR62013637' => 'cqu', 'AUR62022662' => 'cqu', 'AUR62025777' => 'cqu', 'AUR62042386' => 'cqu', 'BcaB01g02310' => 'bca', 'BcaB01g06062' => 'bca', 'BcaB02g08975' => 'bca', 'BcaB02g08980' => 'bca', 'BcaC01g04228' => 'bca', 'BcaC01g06830' => 'bca', 'BcaC02g10186' => 'bca', 'BcaC02g12214' => 'bca', 'BcaC04g24101' => 'bca', 'BcaC05g29520' => 'bca', 'BcaC05g29661' => 'bca', 'BcaC06g32130' => 'bca', 'BcaC06g32131' => 'bca', 'BcaC07g40601' => 'bca', 'BcaC07g42641' => 'bca', 'BcaNung01038' => 'bca', 'BcaNung01676' => 'bca', 'BcaNung02480' => 'bca', 'BcaNung07376' => 'bca', 'BolC3t16146H' => 'bol', 'BolC3t16637H' => 'bol', 'BolC4t22257H' => 'bol', 'BolC4t24728H' => 'bol', 'BolC5t34517H' => 'bol', 'BolC7t45703H' => 'bol', 'BolC8t51166H' => 'bol', 'BolC9t53038H' => 'bol', 'BolC9t60000H' => 'bol', 'BraA01t01345Z' => 'bra', 'BraA01t01346Z' => 'bra', 'BraA01t01348Z' => 'bra', 'BraA03t12347Z' => 'bra', 'BraA03t12775Z' => 'bra', 'BraA03t14439Z' => 'bra', 'BraA04t15860Z' => 'bra', 'BraA05t19511Z' => 'bra', 'BraA05t22746Z' => 'bra', 'BraA09t35767Z' => 'bra', 'BraA09t40732Z' => 'bra', 'BraA10t45233Z' => 'bra', 'C03p38720' => 'bna', 'C03p43680' => 'bna', 'C04p06350' => 'bna', 'C04p31800' => 'bna', 'C05p58680' => 'bna', 'C07p52110' => 'bna', 'C08p35760' => 'bna', 'C09p01050' => 'bna', 'C09p72600' => 'bna', 'CAN.G106.2' => 'can', 'CAN.G1482.1' => 'can', 'CAN.G324.12' => 'can', 'CAN.G388.20' => 'can', 'CAN.G412.7' => 'can', 'CAN.G694.32' => 'can', 'CAN.G92.12' => 'can', 'CANSAT11G2353' => 'cansat', 'CANSAT21G1398' => 'cansat', 'CANSAT56G2456' => 'cansat', 'CANSAT56G3031' => 'cansat', 'CANSAT56G4539' => 'cansat', 'CARHR083680' => 'chi', 'CARHR171190' => 'chi', 'CARHR209010' => 'chi', 'CARHR229680' => 'chi', 'CARHR249490' => 'chi', 'Carub.0003s0844' => 'cru', 'Carub.0005s2755' => 'cru', 'Carub.0006s0322' => 'cru', 'Carub.0006s3586' => 'cru', 'Carub.0007s1855' => 'cru', 'Ca_07808_v3' => 'car', 'Ca_09535_v3' => 'car', 'Ca_10548_v3' => 'car', 'Ca_19913_v3' => 'car', 'Ca_19916_v3' => 'car', 'Ca_19975_v3' => 'car', 'CBR_g22876' => 'cbr', 'CBR_g22879' => 'cbr', 'CBR_g38491' => 'cbr', 'CBR_g54185' => 'cbr', 'CBR_g54190' => 'cbr', 'Cc02_g11020' => 'ccan', 'Cc02_g23920' => 'ccan', 'Cc02_g39860' => 'ccan', 'Cc02_g39870' => 'ccan', 'Cc03_g06760' => 'ccan', 'Cc06_g02450' => 'ccan', 'Cc09_g09450' => 'ccan', 'CDE02G1959' => 'cde', 'CDE04G0600' => 'cde', 'CDE07G1996' => 'cde', 'CDE07G2078' => 'cde', 'CDE11G0611' => 'cde', 'Cfa001683' => 'cfa', 'Cfa001734' => 'cfa', 'Cfa001737' => 'cfa', 'Cfa003751' => 'cfa', 'Cfa012019' => 'cfa', 'Cfa017353' => 'cfa', 'Cfa017732' => 'cfa', 'Cfa022464' => 'cfa', 'Ciclev10012400m.g' => 'ccl', 'Ciclev10021242m.g' => 'ccl', 'Ciclev10021302m.g' => 'ccl', 'Ciclev10021463m.g' => 'ccl', 'Ciclev10032359m.g' => 'ccl', 'CiPaw.01G081000' => 'cil', 'CiPaw.01G262500' => 'cil', 'CiPaw.01G269800' => 'cil', 'CiPaw.02G168400' => 'cil', 'CiPaw.05G119500' => 'cil', 'CiPaw.11G147300' => 'cil', 'ClCG01G003630' => 'cla', 'ClCG05G000510' => 'cla', 'ClCG05G002300' => 'cla', 'ClCG08G007650' => 'cla', 'ClCG10G021250' => 'cla', 'COL.COLO4_06218' => 'col', 'COL.COLO4_12538' => 'col', 'COL.COLO4_14775' => 'col', 'COL.COLO4_23875' => 'col', 'Cpa.g.sc141.16' => 'cpa', 'Cpa.g.sc169.16' => 'cpa', 'Cpa.g.sc244.4' => 'cpa', 'Cpa.g.sc244.5' => 'cpa', 'Cpa.g.sc29.87' => 'cpa', 'Cpa.g.sc53.115' => 'cpa', 'Cre03.g207502' => 'cre', 'Cre06.g277000' => 'cre', 'Cre09.g394050' => 'cre', 'CsaV3_3G007680' => 'csa', 'CsaV3_3G009710' => 'csa', 'CsaV3_3G034790' => 'csa', 'CsaV3_5G003750' => 'csa', 'CsaV3_6G036620' => 'csa', 'CSS0002288' => 'camsi', 'CSS0011250' => 'camsi', 'CSS0021619' => 'camsi', 'CSS0046701' => 'camsi', 'DCAR_006420' => 'dca', 'DCAR_006865' => 'dca', 'DCAR_008558' => 'dca', 'DCAR_028754' => 'dca', 'DCAR_028755' => 'dca', 'Dinv31218' => 'din', 'Dinv32371' => 'din', 'Dinv34250' => 'din', 'Dinv37156' => 'din', 'Dinv43704' => 'din', 'Duzib093G1811' => 'dzi', 'Duzib106G1622' => 'dzi', 'Duzib114G0504' => 'dzi', 'Duzib128G0338' => 'dzi', 'Duzib128G1577' => 'dzi', 'Duzib133G0104' => 'dzi', 'Duzib133G1080' => 'dzi', 'Duzib138G0324' => 'dzi', 'Duzib138G0394' => 'dzi', 'Duzib205G0122' => 'dzi', 'Duzib268G1020' => 'dzi', 'Duzib268G1359' => 'dzi', 'ECA232G3929' => 'eca', 'ECA236G2210' => 'eca', 'ECA236G2287' => 'eca', 'ECA240G4568' => 'eca', 'ECA247G0894' => 'eca', 'EL10Ac1g00200' => 'bvu', 'EL10Ac1g00886' => 'bvu', 'EL10As1g23091' => 'bvu', 'EL10As1g23092' => 'bvu', 'Eucgr.A01284' => 'egr', 'Eucgr.A01285' => 'egr', 'Eucgr.D02456' => 'egr', 'Eucgr.E00018' => 'egr', 'Eucgr.E01439' => 'egr', 'Eucgr.G02859' => 'egr', 'FAN01G0168' => 'fan', 'FAN01G0453' => 'fan', 'FAN01G2761' => 'fan', 'FAN02G1239' => 'fan', 'FAN03G0645' => 'fan', 'FAN03G2707' => 'fan', 'FAN03G2978' => 'fan', 'FAN04G0227' => 'fan', 'FAN06G0091' => 'fan', 'FAN06G1418' => 'fan', 'FAN06G1512' => 'fan', 'FAN06G1986' => 'fan', 'FAN06G2905' => 'fan', 'FAN06G4325' => 'fan', 'FAN08G0033' => 'fan', 'FAN09G0642' => 'fan', 'FAN10G1763' => 'fan', 'FAN10G2026' => 'fan', 'FAN10G2513' => 'fan', 'FAN10G3402' => 'fan', 'FAN10G3564' => 'fan', 'FAN10G3987' => 'fan', 'FAN13G1490' => 'fan', 'FAN14G5857' => 'fan', 'FAN18G1188' => 'fan', 'FvH4_5g00750' => 'fve', 'FvH4_6g13410' => 'fve', 'FvH4_7g11740' => 'fve', 'FvH4_7g17410' => 'fve', 'FvH4_7g18860' => 'fve', 'Glyma.01G099100' => 'gma', 'Glyma.01G142300' => 'gma', 'Glyma.03G025500' => 'gma', 'Glyma.03G069700' => 'gma', 'Glyma.03G260000' => 'gma', 'Glyma.09G269800' => 'gma', 'Glyma.10G208700' => 'gma', 'Glyma.18G220400' => 'gma', 'Glyma.20G182000' => 'gma', 'Gohir.A01G221726' => 'ghi', 'Gohir.A07G134600' => 'ghi', 'Gohir.A07G146000' => 'ghi', 'Gohir.A08G173900' => 'ghi', 'Gohir.A09G194900' => 'ghi', 'Gohir.A10G204100' => 'ghi', 'Gohir.A11G080600' => 'ghi', 'Gohir.A11G327500' => 'ghi', 'Gohir.A12G101800' => 'ghi', 'Gohir.D01G211200' => 'ghi', 'Gohir.D07G139200' => 'ghi', 'Gohir.D07G152100' => 'ghi', 'Gohir.D08G192600' => 'ghi', 'Gohir.D09G189200' => 'ghi', 'Gohir.D10G212000' => 'ghi', 'Gohir.D11G085200' => 'ghi', 'Gohir.D11G346400' => 'ghi', 'Gohir.D12G104800' => 'ghi', 'Gorai.001G151300' => 'gra', 'Gorai.001G174100' => 'gra', 'Gorai.002G257000' => 'gra', 'Gorai.004G202600' => 'gra', 'Gorai.007G090900' => 'gra', 'Gorai.007G376700' => 'gra', 'Gorai.008G114100' => 'gra', 'Gorai.011G237900' => 'gra', 'GSVIVG01005450001' => 'vvi', 'GSVIVG01016232001' => 'vvi', 'GSVIVG01026157001' => 'vvi', 'GSVIVG01027419001' => 'vvi', 'GSVIVG01027631001' => 'vvi', 'GSVIVG01034143001' => 'vvi', 'HanXRQChr03g0093921' => 'han', 'HanXRQChr04g0120001' => 'han', 'HanXRQChr04g0122561' => 'han', 'HanXRQChr09g0246851' => 'han', 'HanXRQChr10g0293311' => 'han', 'HanXRQChr13g0425231' => 'han', 'HanXRQChr16g0532571' => 'han', 'Haze_09050' => 'cav', 'Haze_15715' => 'cav', 'Haze_15716' => 'cav', 'Haze_16803' => 'cav', 'Haze_16850' => 'cav', 'Hma1.2p1_0301F.1_g118655' => 'hma', 'Hma1.2p1_0309F.1_g120590' => 'hma', 'Hma1.2p1_0936F.1_g238900' => 'hma', 'Hma1.2p1_3552F.1_g336740' => 'hma', 'HPP92_003520' => 'vpl', 'HPP92_006628' => 'vpl', 'HPP92_006645' => 'vpl', 'HPP92_014669' => 'vpl', 'HPP92_015077' => 'vpl', 'Hund16742' => 'sun', 'Hund17022' => 'sun', 'Lalb_Chr02g0152131' => 'lal', 'Lalb_Chr05g0225371' => 'lal', 'Lalb_Chr07g0189841' => 'lal', 'Lalb_Chr07g0192961' => 'lal', 'Lalb_Chr12g0208221' => 'lal', 'Lalb_Chr13g0291211' => 'lal', 'Lalb_Chr13g0291781' => 'lal', 'Lalb_Chr18g0044651' => 'lal', 'Lalb_Chr21g0313731' => 'lal', 'Lj1g0022533' => 'lja', 'Lj2A18T50' => 'lonja', 'Lj2A92G93' => 'lonja', 'Lj3A965T73' => 'lonja', 'Lj3g0000673' => 'lja', 'Lj3g0002666' => 'lja', 'Lj4g0016985' => 'lja', 'Lj5g0003625' => 'lja', 'Lj7A529G36' => 'lonja', 'Lj9A569T49' => 'lonja', 'Lj9A604T63' => 'lonja', 'Lsat_1_v5_gn_3_132060' => 'lsa', 'Lsat_1_v5_gn_4_68941' => 'lsa', 'Lsat_1_v5_gn_5_95580' => 'lsa', 'Lsat_1_v5_gn_7_161' => 'lsa', 'Lsat_1_v5_gn_7_7041' => 'lsa', 'Lsat_1_v5_gn_9_33481' => 'lsa', 'Lsat_1_v5_gn_9_68260' => 'lsa', 'Manes.01G073100' => 'mes', 'Manes.01G266300' => 'mes', 'Manes.02G033300' => 'mes', 'Manes.05G017900' => 'mes', 'Manes.05G046100' => 'mes', 'Manes.08G080900' => 'mes', 'Manes.10G049400' => 'mes', 'Mapoly0009s0186' => 'mpo', 'Mapoly0036s0118' => 'mpo', 'Mapoly0101s0046' => 'mpo', 'MBI04_g30218_MAGBIO' => 'mbi', 'MBI04_g35564_MAGBIO' => 'mbi', 'MBI12_g34011_MAGBIO' => 'mbi', 'MBI14_g04655_MAGBIO' => 'mbi', 'MCO07G653' => 'mco', 'MCO10G173' => 'mco', 'MD01G1087100' => 'mdo', 'MD01G1104200' => 'mdo', 'MD02G1205100' => 'mdo', 'MD04G1079200' => 'mdo', 'MD04G1131400' => 'mdo', 'MD07G1121600' => 'mdo', 'MD07G1157300' => 'mdo', 'MD07G1171000' => 'mdo', 'MD12G1144500' => 'mdo', 'Medtr1g094610' => 'mtr', 'Medtr4g021795' => 'mtr', 'Medtr4g023760' => 'mtr', 'Medtr7g118050' => 'mtr', 'MELO3C005582.2' => 'cme', 'MELO3C005989.2' => 'cme', 'MELO3C006192.2' => 'cme', 'MELO3C009248.2' => 'cme', 'MELO3C019817.2' => 'cme', 'Migut.B01625' => 'egut', 'Migut.B01915' => 'egut', 'Migut.F01721' => 'egut', 'Migut.J00314' => 'egut', 'MSTRG.20742' => 'ama', 'MSTRG.8134' => 'ama', 'Nitab4.5_0000096g0010' => 'nta', 'Nitab4.5_0000202g0030' => 'nta', 'Nitab4.5_0000216g0370' => 'nta', 'Nitab4.5_0000457g0230' => 'nta', 'Nitab4.5_0001702g0170' => 'nta', 'Nitab4.5_0003607g0010' => 'nta', 'Nitab4.5_0004917g0020' => 'nta', 'Nitab4.5_0007059g0010' => 'nta', 'Nitab4.5_0007184g0010' => 'nta', 'Nitab4.5_0007346g0020' => 'nta', 'Nn1g00410' => 'nnu', 'Nn1g01252' => 'nnu', 'Nn2g11168' => 'nnu', 'Nn2g13403' => 'nnu', 'Nn2g13760' => 'nnu', 'Nn4g26380' => 'nnu', 'Oeu000806.2' => 'oeu', 'Oeu005788.1' => 'oeu', 'Oeu006900.3' => 'oeu', 'Oeu007797.1' => 'oeu', 'Oeu011932.1' => 'oeu', 'Oeu022739.1' => 'oeu', 'Oeu037918.1' => 'oeu', 'Oeu055490.2' => 'oeu', 'Os01g0844400' => 'osa', 'Os02g0819100' => 'osa', 'Os03g0804300' => 'osa', 'Os05g0458000' => 'osa', 'Os07g0467800' => 'osa', 'Os12g0602200' => 'osa', 'Peaxi162Scf00013g03444' => 'pax', 'Peaxi162Scf00094g01120' => 'pax', 'Peaxi162Scf00191g01211' => 'pax', 'Peaxi162Scf00238g01110' => 'pax', 'Peaxi162Scf00330g00719' => 'pax', 'Peaxi162Scf00627g00018' => 'pax', 'PGR031G2686' => 'pgr', 'PGR042G0809' => 'pgr', 'PGR142G0193' => 'pgr', 'PGSC0003DMG400011066' => 'stu', 'PGSC0003DMG400012041' => 'stu', 'PGSC0003DMG400013678' => 'stu', 'PGSC0003DMG400023477' => 'stu', 'PGSC0003DMG400025956' => 'stu', 'PGSC0003DMG401019151' => 'stu', 'Phvul.006G116400' => 'pvu', 'Phvul.007G097300' => 'pvu', 'Phvul.010G015000' => 'pvu', 'Phvul.010G083900' => 'pvu', 'Potri.001G117100' => 'ptr', 'Potri.002G147300' => 'ptr', 'Potri.003G115600' => 'ptr', 'Potri.006G087400' => 'ptr', 'Potri.010G226100' => 'ptr', 'Potri.014G069200' => 'ptr', 'Potri.014G104000' => 'ptr', 'Potri.016G100200' => 'ptr', 'Pp3c10_20450' => 'ppa', 'Pp3c1_42400' => 'ppa', 'Pp3c3_24390' => 'ppa', 'Pp3c3_2860' => 'ppa', 'PRCOL_00003193' => 'pco', 'Prupe.2G144500' => 'ppe', 'Prupe.2G195700' => 'ppe', 'Prupe.2G209800' => 'ppe', 'Prupe.5G080000' => 'ppe', 'Prupe.6G257900' => 'ppe', 'Psat3g001160' => 'psa', 'Psat6g181880' => 'psa', 'Psat7g233720' => 'psa', 'PSO063G7587' => 'pso', 'PSO339G2145' => 'pso', 'PSO339G3369' => 'pso', 'PSO478G2747' => 'pso', 'PSO513G0140' => 'pso', 'PSO782G1614' => 'pso', 'PSO782G4889' => 'pso', 'PSO782G5485' => 'pso', 'PSO801G0241' => 'pso', 'QL07p048854' => 'qlo', 'QL08p046745' => 'qlo', 'QL08p052606' => 'qlo', 'QL08p053414' => 'qlo', 'QL08p054868' => 'qlo', 'RcHm_v2.0_Chr1g0350251' => 'rch', 'RcHm_v2.0_Chr1g0360851' => 'rch', 'RcHm_v2.0_Chr1g0362791' => 'rch', 'RcHm_v2.0_Chr3g0466281' => 'rch', 'RcHm_v2.0_Chr7g0201481' => 'rch', 'Rhsim01G0148600' => 'rsi', 'Rhsim05G0194400' => 'rsi', 'Rhsim07G0000700' => 'rsi', 'Rhsim07G0000800' => 'rsi', 'Rhsim07G0027900' => 'rsi', 'Rhsim09G0149500' => 'rsi', 'RhsimUnG0186900' => 'rsi', 'Sabra01G0089900' => 'sbr', 'Sabra02G0114700' => 'sbr', 'Sabra02G0116300' => 'sbr', 'Sabra03G0080100' => 'sbr', 'Sabra08G0024300' => 'sbr', 'Sabra10G0174300' => 'sbr', 'Sabra14G0048900' => 'sbr', 'Sabra14G0076500' => 'sbr', 'SalBow5G2513' => 'sbo', 'Sc01g0002300' => 'sci', 'Sc01g0004450' => 'sci', 'Sc06g0001680' => 'sci', 'Sc23g0003580' => 'sci', 'Sed0000913' => 'sed', 'Sed0001655' => 'sed', 'Sed0007745' => 'sed', 'Sed0010951' => 'sed', 'Sed0017599' => 'sed', 'Sed0021405' => 'sed', 'Sed0022810' => 'sed', 'SEGI_07099' => 'sgi', 'SEGI_11931' => 'sgi', 'SEGI_13187' => 'sgi', 'SEGI_29958' => 'sgi', 'SEGI_36351' => 'sgi', 'SGA_v2.0_scaffold126G33770' => 'sas', 'SGA_v2.0_scaffold153G37003' => 'sas', 'SGA_v2.0_scaffold2G01359' => 'sas', 'SGA_v2.0_scaffold5G03064' => 'sas', 'SGA_v2.0_scaffold95G28903' => 'sas', 'SHI12701' => 'shi', 'SHI26410' => 'shi', 'SHI38997' => 'shi', 'SHI53759' => 'shi', 'SHI53886' => 'shi', 'SHI54714' => 'shi', 'SMO011G0041' => 'smo', 'SMO146G0251' => 'smo', 'SMO160G0004' => 'smo', 'SMO174G0057' => 'smo', 'SMO244G0089' => 'smo', 'SMO296G0011' => 'smo', 'Solyc01g091280.3' => 'sly', 'Solyc05g047610.3' => 'sly', 'Solyc05g047640.3' => 'sly', 'Solyc05g055630.3' => 'sly', 'Solyc10g018160.2' => 'sly', 'Solyc10g084820.2' => 'sly', 'Solyc10g086565.2' => 'sly', 'Sopen01g037030' => 'spe', 'Sopen05g027920' => 'spe', 'Sopen05g034070' => 'spe', 'Sopen10g007260' => 'spe', 'Sopen10g034260' => 'spe', 'Sopen10g035950' => 'spe', 'Sp3g07710' => 'spa', 'Sp4g27420' => 'spa', 'Sp5g02450' => 'spa', 'Sp6g01280' => 'spa', 'Sp6g38480' => 'spa', 'Sp7g20780' => 'spa', 'TAR374G1413' => 'tar', 'TAR623G1777' => 'tar', 'TAR629G2370' => 'tar', 'TAR633G1759' => 'tar', 'TAR636G3387' => 'tar', 'THA.LOC104802447' => 'tha', 'THA.LOC104813916' => 'tha', 'THA.LOC104816423' => 'tha', 'THA.LOC104817246' => 'tha', 'THA.LOC104825895' => 'tha', 'Thecc.01G335200' => 'tca', 'Thecc.01G377400' => 'tca', 'Thecc.03G262200' => 'tca', 'Thecc.05G036800' => 'tca', 'Thecc.10G080500' => 'tca', 'Thecc.10G080800' => 'tca', 'Thhalv10001560m.g' => 'esa', 'Thhalv10006120m.g' => 'esa', 'Thhalv10014375m.g' => 'esa', 'Thhalv10021264m.g' => 'esa', 'Thhalv10028856m.g' => 'esa', 'TPR.G1914' => 'tpr', 'TPR.G4757' => 'tpr', 'TPR.G5595' => 'tpr', 'TWI14G0952' => 'twi', 'TWI14G1307' => 'twi', 'TWI38G2143' => 'twi', 'TWI59G0826' => 'twi', 'TWI77G0527' => 'twi', 'TWI81G0150' => 'twi', 'unitig_21.g21018' => 'ugi', 'unitig_26.g9725' => 'ugi', 'unitig_744.g24653' => 'ugi', 'unitig_749.g13778' => 'ugi', 'unitig_899.g15035' => 'ugi', 'vmacro04296' => 'vma', 'vmacro04852' => 'vma', 'vmacro13404' => 'vma', 'vmacro20169' => 'vma', 'vmacro21014' => 'vma', 'VMungo0331G0237' => 'vmu', 'VMungo0331G0706' => 'vmu', 'VMungo0331G1361' => 'vmu', 'VMungo0331G1489' => 'vmu', 'VMungo0540G1037' => 'vmu', 'VMungo0720G2487' => 'vmu', 'VMungo0720G2721' => 'vmu', 'Zm00001eb086860' => 'zma', 'Zm00001eb104760' => 'zma', 'Zm00001eb148220' => 'zma', 'Zm00001eb259030' => 'zma', 'Zm00001eb289590' => 'zma', 'Zm00001eb420150' => 'zma' ) $gf_id = 'HOM05D000968' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000968' ) $data_identifier = 'HOM05D000968' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 19, 'bol' => (int) 9, 'bra' => (int) 12, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 5, 'ccan' => (int) 7, 'cde' => (int) 5, 'cfa' => (int) 8, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 4, 'dca' => (int) 5, 'din' => (int) 5, 'dzi' => (int) 12, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 25, 'fve' => (int) 5, 'gma' => (int) 9, 'ghi' => (int) 18, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 7, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 5, 'sun' => (int) 2, 'lal' => (int) 9, 'lja' => (int) 5, 'lonja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 9, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 2, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 3, 'stu' => (int) 6, 'pvu' => (int) 4, 'ptr' => (int) 8, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 3, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 1, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 5, 'sas' => (int) 5, 'shi' => (int) 6, 'smo' => (int) 6, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 3, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420150' $species_info = array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ) $local_species = 'spe' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000968', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p31690' => 'bna', 'A03p36040' => 'bna', 'A03p53730' => 'bna', 'A04p01410' => 'bna', 'A05p05420' => 'bna', 'A05p39630' => 'bna', 'A05p39640' => 'bna', 'A09p00970' => 'bna', 'A09p53060' => 'bna', 'A10p31890' => 'bna', 'Aa31LG10G15040' => 'aar', 'Aa31LG1G21090' => 'aar', 'Aa31LG1G26900' => 'aar', 'Aa31LG3G1820' => 'aar', 'Aa31LG5G1100' => 'aar', 'Aa31LG6G4740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2265' => 'aag', 'Actinidia07998' => 'ach', 'Actinidia11266' => 'ach', 'Actinidia12682' => 'ach', 'Actinidia26479' => 'ach', 'Actinidia31406' => 'ach', 'Actinidia32437' => 'ach', 'Actinidia38862' => 'ach', 'Ah.05g174230' => 'amhyb', 'Ah.05g179070' => 'amhyb', 'Ah.05g179090' => 'amhyb', 'Ah.12g059950' => 'amhyb', 'AL3G20480' => 'aly', 'AL4G44520' => 'aly', 'AL5G43110' => 'aly', 'AL6G13890' => 'aly', 'AL6G52620' => 'aly', 'AL7G30830' => 'aly', 'Aqoxy1G00899' => 'aox', 'Aqoxy5G04333' => 'aox', 'Aqoxy7G00641' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3IZ0NN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4EF6AW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W9P8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79GA3M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C43NQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFCU6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G95YVJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCHK29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LU1UG8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX91RN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGB4B1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8DA0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9H7JI' => 'arhy', 'AT3G09320' => 'ath', 'AT3G60800' => 'ath', 'AT4G00840' => 'ath', 'AT4G22750' => 'ath', 'AT5G04270' => 'ath', 'ATR0090G003' => 'atr', 'ATR0559G349' => 'atr', 'ATR0680G261' => 'atr', 'ATR0810G048' => 'atr', 'Atru.chr12.831' => 'acertr', 'Atru.chr5.303' => 'acertr', 'Atru.chr5.748' => 'acertr', 'Atru.chr8.1999' => 'acertr', 'Atru.chr9.1436' => 'acertr', 'AUR62004211' => 'cqu', 'AUR62004548' => 'cqu', 'AUR62013637' => 'cqu', 'AUR62022662' => 'cqu', 'AUR62025777' => 'cqu', 'AUR62042386' => 'cqu', 'BcaB01g02310' => 'bca', 'BcaB01g06062' => 'bca', 'BcaB02g08975' => 'bca', 'BcaB02g08980' => 'bca', 'BcaC01g04228' => 'bca', 'BcaC01g06830' => 'bca', 'BcaC02g10186' => 'bca', 'BcaC02g12214' => 'bca', 'BcaC04g24101' => 'bca', 'BcaC05g29520' => 'bca', 'BcaC05g29661' => 'bca', 'BcaC06g32130' => 'bca', 'BcaC06g32131' => 'bca', 'BcaC07g40601' => 'bca', 'BcaC07g42641' => 'bca', 'BcaNung01038' => 'bca', 'BcaNung01676' => 'bca', 'BcaNung02480' => 'bca', 'BcaNung07376' => 'bca', 'BolC3t16146H' => 'bol', 'BolC3t16637H' => 'bol', 'BolC4t22257H' => 'bol', 'BolC4t24728H' => 'bol', 'BolC5t34517H' => 'bol', 'BolC7t45703H' => 'bol', 'BolC8t51166H' => 'bol', 'BolC9t53038H' => 'bol', 'BolC9t60000H' => 'bol', 'BraA01t01345Z' => 'bra', 'BraA01t01346Z' => 'bra', 'BraA01t01348Z' => 'bra', 'BraA03t12347Z' => 'bra', 'BraA03t12775Z' => 'bra', 'BraA03t14439Z' => 'bra', 'BraA04t15860Z' => 'bra', 'BraA05t19511Z' => 'bra', 'BraA05t22746Z' => 'bra', 'BraA09t35767Z' => 'bra', 'BraA09t40732Z' => 'bra', 'BraA10t45233Z' => 'bra', 'C03p38720' => 'bna', 'C03p43680' => 'bna', 'C04p06350' => 'bna', 'C04p31800' => 'bna', 'C05p58680' => 'bna', 'C07p52110' => 'bna', 'C08p35760' => 'bna', 'C09p01050' => 'bna', 'C09p72600' => 'bna', 'CAN.G106.2' => 'can', 'CAN.G1482.1' => 'can', 'CAN.G324.12' => 'can', 'CAN.G388.20' => 'can', 'CAN.G412.7' => 'can', 'CAN.G694.32' => 'can', 'CAN.G92.12' => 'can', 'CANSAT11G2353' => 'cansat', 'CANSAT21G1398' => 'cansat', 'CANSAT56G2456' => 'cansat', 'CANSAT56G3031' => 'cansat', 'CANSAT56G4539' => 'cansat', 'CARHR083680' => 'chi', 'CARHR171190' => 'chi', 'CARHR209010' => 'chi', 'CARHR229680' => 'chi', 'CARHR249490' => 'chi', 'Carub.0003s0844' => 'cru', 'Carub.0005s2755' => 'cru', 'Carub.0006s0322' => 'cru', 'Carub.0006s3586' => 'cru', 'Carub.0007s1855' => 'cru', 'Ca_07808_v3' => 'car', 'Ca_09535_v3' => 'car', 'Ca_10548_v3' => 'car', 'Ca_19913_v3' => 'car', 'Ca_19916_v3' => 'car', 'Ca_19975_v3' => 'car', 'CBR_g22876' => 'cbr', 'CBR_g22879' => 'cbr', 'CBR_g38491' => 'cbr', 'CBR_g54185' => 'cbr', 'CBR_g54190' => 'cbr', 'Cc02_g11020' => 'ccan', 'Cc02_g23920' => 'ccan', 'Cc02_g39860' => 'ccan', 'Cc02_g39870' => 'ccan', 'Cc03_g06760' => 'ccan', 'Cc06_g02450' => 'ccan', 'Cc09_g09450' => 'ccan', 'CDE02G1959' => 'cde', 'CDE04G0600' => 'cde', 'CDE07G1996' => 'cde', 'CDE07G2078' => 'cde', 'CDE11G0611' => 'cde', 'Cfa001683' => 'cfa', 'Cfa001734' => 'cfa', 'Cfa001737' => 'cfa', 'Cfa003751' => 'cfa', 'Cfa012019' => 'cfa', 'Cfa017353' => 'cfa', 'Cfa017732' => 'cfa', 'Cfa022464' => 'cfa', 'Ciclev10012400m.g' => 'ccl', 'Ciclev10021242m.g' => 'ccl', 'Ciclev10021302m.g' => 'ccl', 'Ciclev10021463m.g' => 'ccl', 'Ciclev10032359m.g' => 'ccl', 'CiPaw.01G081000' => 'cil', 'CiPaw.01G262500' => 'cil', 'CiPaw.01G269800' => 'cil', 'CiPaw.02G168400' => 'cil', 'CiPaw.05G119500' => 'cil', 'CiPaw.11G147300' => 'cil', 'ClCG01G003630' => 'cla', 'ClCG05G000510' => 'cla', 'ClCG05G002300' => 'cla', 'ClCG08G007650' => 'cla', 'ClCG10G021250' => 'cla', 'COL.COLO4_06218' => 'col', 'COL.COLO4_12538' => 'col', 'COL.COLO4_14775' => 'col', 'COL.COLO4_23875' => 'col', 'Cpa.g.sc141.16' => 'cpa', 'Cpa.g.sc169.16' => 'cpa', 'Cpa.g.sc244.4' => 'cpa', 'Cpa.g.sc244.5' => 'cpa', 'Cpa.g.sc29.87' => 'cpa', 'Cpa.g.sc53.115' => 'cpa', 'Cre03.g207502' => 'cre', 'Cre06.g277000' => 'cre', 'Cre09.g394050' => 'cre', 'CsaV3_3G007680' => 'csa', 'CsaV3_3G009710' => 'csa', 'CsaV3_3G034790' => 'csa', 'CsaV3_5G003750' => 'csa', 'CsaV3_6G036620' => 'csa', 'CSS0002288' => 'camsi', 'CSS0011250' => 'camsi', 'CSS0021619' => 'camsi', 'CSS0046701' => 'camsi', 'DCAR_006420' => 'dca', 'DCAR_006865' => 'dca', 'DCAR_008558' => 'dca', 'DCAR_028754' => 'dca', 'DCAR_028755' => 'dca', 'Dinv31218' => 'din', 'Dinv32371' => 'din', 'Dinv34250' => 'din', 'Dinv37156' => 'din', 'Dinv43704' => 'din', 'Duzib093G1811' => 'dzi', 'Duzib106G1622' => 'dzi', 'Duzib114G0504' => 'dzi', 'Duzib128G0338' => 'dzi', 'Duzib128G1577' => 'dzi', 'Duzib133G0104' => 'dzi', 'Duzib133G1080' => 'dzi', 'Duzib138G0324' => 'dzi', 'Duzib138G0394' => 'dzi', 'Duzib205G0122' => 'dzi', 'Duzib268G1020' => 'dzi', 'Duzib268G1359' => 'dzi', 'ECA232G3929' => 'eca', 'ECA236G2210' => 'eca', 'ECA236G2287' => 'eca', 'ECA240G4568' => 'eca', 'ECA247G0894' => 'eca', 'EL10Ac1g00200' => 'bvu', 'EL10Ac1g00886' => 'bvu', 'EL10As1g23091' => 'bvu', 'EL10As1g23092' => 'bvu', 'Eucgr.A01284' => 'egr', 'Eucgr.A01285' => 'egr', 'Eucgr.D02456' => 'egr', 'Eucgr.E00018' => 'egr', 'Eucgr.E01439' => 'egr', 'Eucgr.G02859' => 'egr', 'FAN01G0168' => 'fan', 'FAN01G0453' => 'fan', 'FAN01G2761' => 'fan', 'FAN02G1239' => 'fan', 'FAN03G0645' => 'fan', 'FAN03G2707' => 'fan', 'FAN03G2978' => 'fan', 'FAN04G0227' => 'fan', 'FAN06G0091' => 'fan', 'FAN06G1418' => 'fan', 'FAN06G1512' => 'fan', 'FAN06G1986' => 'fan', 'FAN06G2905' => 'fan', 'FAN06G4325' => 'fan', 'FAN08G0033' => 'fan', 'FAN09G0642' => 'fan', 'FAN10G1763' => 'fan', 'FAN10G2026' => 'fan', 'FAN10G2513' => 'fan', 'FAN10G3402' => 'fan', 'FAN10G3564' => 'fan', 'FAN10G3987' => 'fan', 'FAN13G1490' => 'fan', 'FAN14G5857' => 'fan', 'FAN18G1188' => 'fan', 'FvH4_5g00750' => 'fve', 'FvH4_6g13410' => 'fve', 'FvH4_7g11740' => 'fve', 'FvH4_7g17410' => 'fve', 'FvH4_7g18860' => 'fve', 'Glyma.01G099100' => 'gma', 'Glyma.01G142300' => 'gma', 'Glyma.03G025500' => 'gma', 'Glyma.03G069700' => 'gma', 'Glyma.03G260000' => 'gma', 'Glyma.09G269800' => 'gma', 'Glyma.10G208700' => 'gma', 'Glyma.18G220400' => 'gma', 'Glyma.20G182000' => 'gma', 'Gohir.A01G221726' => 'ghi', 'Gohir.A07G134600' => 'ghi', 'Gohir.A07G146000' => 'ghi', 'Gohir.A08G173900' => 'ghi', 'Gohir.A09G194900' => 'ghi', 'Gohir.A10G204100' => 'ghi', 'Gohir.A11G080600' => 'ghi', 'Gohir.A11G327500' => 'ghi', 'Gohir.A12G101800' => 'ghi', 'Gohir.D01G211200' => 'ghi', 'Gohir.D07G139200' => 'ghi', 'Gohir.D07G152100' => 'ghi', 'Gohir.D08G192600' => 'ghi', 'Gohir.D09G189200' => 'ghi', 'Gohir.D10G212000' => 'ghi', 'Gohir.D11G085200' => 'ghi', 'Gohir.D11G346400' => 'ghi', 'Gohir.D12G104800' => 'ghi', 'Gorai.001G151300' => 'gra', 'Gorai.001G174100' => 'gra', 'Gorai.002G257000' => 'gra', 'Gorai.004G202600' => 'gra', 'Gorai.007G090900' => 'gra', 'Gorai.007G376700' => 'gra', 'Gorai.008G114100' => 'gra', 'Gorai.011G237900' => 'gra', 'GSVIVG01005450001' => 'vvi', 'GSVIVG01016232001' => 'vvi', 'GSVIVG01026157001' => 'vvi', 'GSVIVG01027419001' => 'vvi', 'GSVIVG01027631001' => 'vvi', 'GSVIVG01034143001' => 'vvi', 'HanXRQChr03g0093921' => 'han', 'HanXRQChr04g0120001' => 'han', 'HanXRQChr04g0122561' => 'han', 'HanXRQChr09g0246851' => 'han', 'HanXRQChr10g0293311' => 'han', 'HanXRQChr13g0425231' => 'han', 'HanXRQChr16g0532571' => 'han', 'Haze_09050' => 'cav', 'Haze_15715' => 'cav', 'Haze_15716' => 'cav', 'Haze_16803' => 'cav', 'Haze_16850' => 'cav', 'Hma1.2p1_0301F.1_g118655' => 'hma', 'Hma1.2p1_0309F.1_g120590' => 'hma', 'Hma1.2p1_0936F.1_g238900' => 'hma', 'Hma1.2p1_3552F.1_g336740' => 'hma', 'HPP92_003520' => 'vpl', 'HPP92_006628' => 'vpl', 'HPP92_006645' => 'vpl', 'HPP92_014669' => 'vpl', 'HPP92_015077' => 'vpl', 'Hund16742' => 'sun', 'Hund17022' => 'sun', 'Lalb_Chr02g0152131' => 'lal', 'Lalb_Chr05g0225371' => 'lal', 'Lalb_Chr07g0189841' => 'lal', 'Lalb_Chr07g0192961' => 'lal', 'Lalb_Chr12g0208221' => 'lal', 'Lalb_Chr13g0291211' => 'lal', 'Lalb_Chr13g0291781' => 'lal', 'Lalb_Chr18g0044651' => 'lal', 'Lalb_Chr21g0313731' => 'lal', 'Lj1g0022533' => 'lja', 'Lj2A18T50' => 'lonja', 'Lj2A92G93' => 'lonja', 'Lj3A965T73' => 'lonja', 'Lj3g0000673' => 'lja', 'Lj3g0002666' => 'lja', 'Lj4g0016985' => 'lja', 'Lj5g0003625' => 'lja', 'Lj7A529G36' => 'lonja', 'Lj9A569T49' => 'lonja', 'Lj9A604T63' => 'lonja', 'Lsat_1_v5_gn_3_132060' => 'lsa', 'Lsat_1_v5_gn_4_68941' => 'lsa', 'Lsat_1_v5_gn_5_95580' => 'lsa', 'Lsat_1_v5_gn_7_161' => 'lsa', 'Lsat_1_v5_gn_7_7041' => 'lsa', 'Lsat_1_v5_gn_9_33481' => 'lsa', 'Lsat_1_v5_gn_9_68260' => 'lsa', 'Manes.01G073100' => 'mes', 'Manes.01G266300' => 'mes', 'Manes.02G033300' => 'mes', 'Manes.05G017900' => 'mes', 'Manes.05G046100' => 'mes', 'Manes.08G080900' => 'mes', 'Manes.10G049400' => 'mes', 'Mapoly0009s0186' => 'mpo', 'Mapoly0036s0118' => 'mpo', 'Mapoly0101s0046' => 'mpo', 'MBI04_g30218_MAGBIO' => 'mbi', 'MBI04_g35564_MAGBIO' => 'mbi', 'MBI12_g34011_MAGBIO' => 'mbi', 'MBI14_g04655_MAGBIO' => 'mbi', 'MCO07G653' => 'mco', 'MCO10G173' => 'mco', 'MD01G1087100' => 'mdo', 'MD01G1104200' => 'mdo', 'MD02G1205100' => 'mdo', 'MD04G1079200' => 'mdo', 'MD04G1131400' => 'mdo', 'MD07G1121600' => 'mdo', 'MD07G1157300' => 'mdo', 'MD07G1171000' => 'mdo', 'MD12G1144500' => 'mdo', 'Medtr1g094610' => 'mtr', 'Medtr4g021795' => 'mtr', 'Medtr4g023760' => 'mtr', 'Medtr7g118050' => 'mtr', 'MELO3C005582.2' => 'cme', 'MELO3C005989.2' => 'cme', 'MELO3C006192.2' => 'cme', 'MELO3C009248.2' => 'cme', 'MELO3C019817.2' => 'cme', 'Migut.B01625' => 'egut', 'Migut.B01915' => 'egut', 'Migut.F01721' => 'egut', 'Migut.J00314' => 'egut', 'MSTRG.20742' => 'ama', 'MSTRG.8134' => 'ama', 'Nitab4.5_0000096g0010' => 'nta', 'Nitab4.5_0000202g0030' => 'nta', 'Nitab4.5_0000216g0370' => 'nta', 'Nitab4.5_0000457g0230' => 'nta', 'Nitab4.5_0001702g0170' => 'nta', 'Nitab4.5_0003607g0010' => 'nta', 'Nitab4.5_0004917g0020' => 'nta', 'Nitab4.5_0007059g0010' => 'nta', 'Nitab4.5_0007184g0010' => 'nta', 'Nitab4.5_0007346g0020' => 'nta', 'Nn1g00410' => 'nnu', 'Nn1g01252' => 'nnu', 'Nn2g11168' => 'nnu', 'Nn2g13403' => 'nnu', 'Nn2g13760' => 'nnu', 'Nn4g26380' => 'nnu', 'Oeu000806.2' => 'oeu', 'Oeu005788.1' => 'oeu', 'Oeu006900.3' => 'oeu', 'Oeu007797.1' => 'oeu', 'Oeu011932.1' => 'oeu', 'Oeu022739.1' => 'oeu', 'Oeu037918.1' => 'oeu', 'Oeu055490.2' => 'oeu', 'Os01g0844400' => 'osa', 'Os02g0819100' => 'osa', 'Os03g0804300' => 'osa', 'Os05g0458000' => 'osa', 'Os07g0467800' => 'osa', 'Os12g0602200' => 'osa', 'Peaxi162Scf00013g03444' => 'pax', 'Peaxi162Scf00094g01120' => 'pax', 'Peaxi162Scf00191g01211' => 'pax', 'Peaxi162Scf00238g01110' => 'pax', 'Peaxi162Scf00330g00719' => 'pax', 'Peaxi162Scf00627g00018' => 'pax', 'PGR031G2686' => 'pgr', 'PGR042G0809' => 'pgr', 'PGR142G0193' => 'pgr', 'PGSC0003DMG400011066' => 'stu', 'PGSC0003DMG400012041' => 'stu', 'PGSC0003DMG400013678' => 'stu', 'PGSC0003DMG400023477' => 'stu', 'PGSC0003DMG400025956' => 'stu', 'PGSC0003DMG401019151' => 'stu', 'Phvul.006G116400' => 'pvu', 'Phvul.007G097300' => 'pvu', 'Phvul.010G015000' => 'pvu', 'Phvul.010G083900' => 'pvu', 'Potri.001G117100' => 'ptr', 'Potri.002G147300' => 'ptr', 'Potri.003G115600' => 'ptr', 'Potri.006G087400' => 'ptr', 'Potri.010G226100' => 'ptr', 'Potri.014G069200' => 'ptr', 'Potri.014G104000' => 'ptr', 'Potri.016G100200' => 'ptr', 'Pp3c10_20450' => 'ppa', 'Pp3c1_42400' => 'ppa', 'Pp3c3_24390' => 'ppa', 'Pp3c3_2860' => 'ppa', 'PRCOL_00003193' => 'pco', 'Prupe.2G144500' => 'ppe', 'Prupe.2G195700' => 'ppe', 'Prupe.2G209800' => 'ppe', 'Prupe.5G080000' => 'ppe', 'Prupe.6G257900' => 'ppe', 'Psat3g001160' => 'psa', 'Psat6g181880' => 'psa', 'Psat7g233720' => 'psa', 'PSO063G7587' => 'pso', 'PSO339G2145' => 'pso', 'PSO339G3369' => 'pso', 'PSO478G2747' => 'pso', 'PSO513G0140' => 'pso', 'PSO782G1614' => 'pso', 'PSO782G4889' => 'pso', 'PSO782G5485' => 'pso', 'PSO801G0241' => 'pso', 'QL07p048854' => 'qlo', 'QL08p046745' => 'qlo', 'QL08p052606' => 'qlo', 'QL08p053414' => 'qlo', 'QL08p054868' => 'qlo', 'RcHm_v2.0_Chr1g0350251' => 'rch', 'RcHm_v2.0_Chr1g0360851' => 'rch', 'RcHm_v2.0_Chr1g0362791' => 'rch', 'RcHm_v2.0_Chr3g0466281' => 'rch', 'RcHm_v2.0_Chr7g0201481' => 'rch', 'Rhsim01G0148600' => 'rsi', 'Rhsim05G0194400' => 'rsi', 'Rhsim07G0000700' => 'rsi', 'Rhsim07G0000800' => 'rsi', 'Rhsim07G0027900' => 'rsi', 'Rhsim09G0149500' => 'rsi', 'RhsimUnG0186900' => 'rsi', 'Sabra01G0089900' => 'sbr', 'Sabra02G0114700' => 'sbr', 'Sabra02G0116300' => 'sbr', 'Sabra03G0080100' => 'sbr', 'Sabra08G0024300' => 'sbr', 'Sabra10G0174300' => 'sbr', 'Sabra14G0048900' => 'sbr', 'Sabra14G0076500' => 'sbr', 'SalBow5G2513' => 'sbo', 'Sc01g0002300' => 'sci', 'Sc01g0004450' => 'sci', 'Sc06g0001680' => 'sci', 'Sc23g0003580' => 'sci', 'Sed0000913' => 'sed', 'Sed0001655' => 'sed', 'Sed0007745' => 'sed', 'Sed0010951' => 'sed', 'Sed0017599' => 'sed', 'Sed0021405' => 'sed', 'Sed0022810' => 'sed', 'SEGI_07099' => 'sgi', 'SEGI_11931' => 'sgi', 'SEGI_13187' => 'sgi', 'SEGI_29958' => 'sgi', 'SEGI_36351' => 'sgi', 'SGA_v2.0_scaffold126G33770' => 'sas', 'SGA_v2.0_scaffold153G37003' => 'sas', 'SGA_v2.0_scaffold2G01359' => 'sas', 'SGA_v2.0_scaffold5G03064' => 'sas', 'SGA_v2.0_scaffold95G28903' => 'sas', 'SHI12701' => 'shi', 'SHI26410' => 'shi', 'SHI38997' => 'shi', 'SHI53759' => 'shi', 'SHI53886' => 'shi', 'SHI54714' => 'shi', 'SMO011G0041' => 'smo', 'SMO146G0251' => 'smo', 'SMO160G0004' => 'smo', 'SMO174G0057' => 'smo', 'SMO244G0089' => 'smo', 'SMO296G0011' => 'smo', 'Solyc01g091280.3' => 'sly', 'Solyc05g047610.3' => 'sly', 'Solyc05g047640.3' => 'sly', 'Solyc05g055630.3' => 'sly', 'Solyc10g018160.2' => 'sly', 'Solyc10g084820.2' => 'sly', 'Solyc10g086565.2' => 'sly', 'Sopen01g037030' => 'spe', 'Sopen05g027920' => 'spe', 'Sopen05g034070' => 'spe', 'Sopen10g007260' => 'spe', 'Sopen10g034260' => 'spe', 'Sopen10g035950' => 'spe', 'Sp3g07710' => 'spa', 'Sp4g27420' => 'spa', 'Sp5g02450' => 'spa', 'Sp6g01280' => 'spa', 'Sp6g38480' => 'spa', 'Sp7g20780' => 'spa', 'TAR374G1413' => 'tar', 'TAR623G1777' => 'tar', 'TAR629G2370' => 'tar', 'TAR633G1759' => 'tar', 'TAR636G3387' => 'tar', 'THA.LOC104802447' => 'tha', 'THA.LOC104813916' => 'tha', 'THA.LOC104816423' => 'tha', 'THA.LOC104817246' => 'tha', 'THA.LOC104825895' => 'tha', 'Thecc.01G335200' => 'tca', 'Thecc.01G377400' => 'tca', 'Thecc.03G262200' => 'tca', 'Thecc.05G036800' => 'tca', 'Thecc.10G080500' => 'tca', 'Thecc.10G080800' => 'tca', 'Thhalv10001560m.g' => 'esa', 'Thhalv10006120m.g' => 'esa', 'Thhalv10014375m.g' => 'esa', 'Thhalv10021264m.g' => 'esa', 'Thhalv10028856m.g' => 'esa', 'TPR.G1914' => 'tpr', 'TPR.G4757' => 'tpr', 'TPR.G5595' => 'tpr', 'TWI14G0952' => 'twi', 'TWI14G1307' => 'twi', 'TWI38G2143' => 'twi', 'TWI59G0826' => 'twi', 'TWI77G0527' => 'twi', 'TWI81G0150' => 'twi', 'unitig_21.g21018' => 'ugi', 'unitig_26.g9725' => 'ugi', 'unitig_744.g24653' => 'ugi', 'unitig_749.g13778' => 'ugi', 'unitig_899.g15035' => 'ugi', 'vmacro04296' => 'vma', 'vmacro04852' => 'vma', 'vmacro13404' => 'vma', 'vmacro20169' => 'vma', 'vmacro21014' => 'vma', 'VMungo0331G0237' => 'vmu', 'VMungo0331G0706' => 'vmu', 'VMungo0331G1361' => 'vmu', 'VMungo0331G1489' => 'vmu', 'VMungo0540G1037' => 'vmu', 'VMungo0720G2487' => 'vmu', 'VMungo0720G2721' => 'vmu', 'Zm00001eb086860' => 'zma', 'Zm00001eb104760' => 'zma', 'Zm00001eb148220' => 'zma', 'Zm00001eb259030' => 'zma', 'Zm00001eb289590' => 'zma', 'Zm00001eb420150' => 'zma' ), 'gf_id' => 'HOM05D000968', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000968' ), 'data_identifier' => 'HOM05D000968', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000968', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p31690' => 'bna', 'A03p36040' => 'bna', 'A03p53730' => 'bna', 'A04p01410' => 'bna', 'A05p05420' => 'bna', 'A05p39630' => 'bna', 'A05p39640' => 'bna', 'A09p00970' => 'bna', 'A09p53060' => 'bna', 'A10p31890' => 'bna', 'Aa31LG10G15040' => 'aar', 'Aa31LG1G21090' => 'aar', 'Aa31LG1G26900' => 'aar', 'Aa31LG3G1820' => 'aar', 'Aa31LG5G1100' => 'aar', 'Aa31LG6G4740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2265' => 'aag', 'Actinidia07998' => 'ach', 'Actinidia11266' => 'ach', 'Actinidia12682' => 'ach', 'Actinidia26479' => 'ach', 'Actinidia31406' => 'ach', 'Actinidia32437' => 'ach', 'Actinidia38862' => 'ach', 'Ah.05g174230' => 'amhyb', 'Ah.05g179070' => 'amhyb', 'Ah.05g179090' => 'amhyb', 'Ah.12g059950' => 'amhyb', 'AL3G20480' => 'aly', 'AL4G44520' => 'aly', 'AL5G43110' => 'aly', 'AL6G13890' => 'aly', 'AL6G52620' => 'aly', 'AL7G30830' => 'aly', 'Aqoxy1G00899' => 'aox', 'Aqoxy5G04333' => 'aox', 'Aqoxy7G00641' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3IZ0NN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4EF6AW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W9P8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79GA3M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C43NQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFCU6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G95YVJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCHK29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LU1UG8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX91RN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGB4B1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8DA0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9H7JI' => 'arhy', 'AT3G09320' => 'ath', 'AT3G60800' => 'ath', 'AT4G00840' => 'ath', 'AT4G22750' => 'ath', 'AT5G04270' => 'ath', 'ATR0090G003' => 'atr', 'ATR0559G349' => 'atr', 'ATR0680G261' => 'atr', 'ATR0810G048' => 'atr', 'Atru.chr12.831' => 'acertr', 'Atru.chr5.303' => 'acertr', 'Atru.chr5.748' => 'acertr', 'Atru.chr8.1999' => 'acertr', 'Atru.chr9.1436' => 'acertr', 'AUR62004211' => 'cqu', 'AUR62004548' => 'cqu', 'AUR62013637' => 'cqu', 'AUR62022662' => 'cqu', 'AUR62025777' => 'cqu', 'AUR62042386' => 'cqu', 'BcaB01g02310' => 'bca', 'BcaB01g06062' => 'bca', 'BcaB02g08975' => 'bca', 'BcaB02g08980' => 'bca', 'BcaC01g04228' => 'bca', 'BcaC01g06830' => 'bca', 'BcaC02g10186' => 'bca', 'BcaC02g12214' => 'bca', 'BcaC04g24101' => 'bca', 'BcaC05g29520' => 'bca', 'BcaC05g29661' => 'bca', 'BcaC06g32130' => 'bca', 'BcaC06g32131' => 'bca', 'BcaC07g40601' => 'bca', 'BcaC07g42641' => 'bca', 'BcaNung01038' => 'bca', 'BcaNung01676' => 'bca', 'BcaNung02480' => 'bca', 'BcaNung07376' => 'bca', 'BolC3t16146H' => 'bol', 'BolC3t16637H' => 'bol', 'BolC4t22257H' => 'bol', 'BolC4t24728H' => 'bol', 'BolC5t34517H' => 'bol', 'BolC7t45703H' => 'bol', 'BolC8t51166H' => 'bol', 'BolC9t53038H' => 'bol', 'BolC9t60000H' => 'bol', 'BraA01t01345Z' => 'bra', 'BraA01t01346Z' => 'bra', 'BraA01t01348Z' => 'bra', 'BraA03t12347Z' => 'bra', 'BraA03t12775Z' => 'bra', 'BraA03t14439Z' => 'bra', 'BraA04t15860Z' => 'bra', 'BraA05t19511Z' => 'bra', 'BraA05t22746Z' => 'bra', 'BraA09t35767Z' => 'bra', 'BraA09t40732Z' => 'bra', 'BraA10t45233Z' => 'bra', 'C03p38720' => 'bna', 'C03p43680' => 'bna', 'C04p06350' => 'bna', 'C04p31800' => 'bna', 'C05p58680' => 'bna', 'C07p52110' => 'bna', 'C08p35760' => 'bna', 'C09p01050' => 'bna', 'C09p72600' => 'bna', 'CAN.G106.2' => 'can', 'CAN.G1482.1' => 'can', 'CAN.G324.12' => 'can', 'CAN.G388.20' => 'can', 'CAN.G412.7' => 'can', 'CAN.G694.32' => 'can', 'CAN.G92.12' => 'can', 'CANSAT11G2353' => 'cansat', 'CANSAT21G1398' => 'cansat', 'CANSAT56G2456' => 'cansat', 'CANSAT56G3031' => 'cansat', 'CANSAT56G4539' => 'cansat', 'CARHR083680' => 'chi', 'CARHR171190' => 'chi', 'CARHR209010' => 'chi', 'CARHR229680' => 'chi', 'CARHR249490' => 'chi', 'Carub.0003s0844' => 'cru', 'Carub.0005s2755' => 'cru', 'Carub.0006s0322' => 'cru', 'Carub.0006s3586' => 'cru', 'Carub.0007s1855' => 'cru', 'Ca_07808_v3' => 'car', 'Ca_09535_v3' => 'car', 'Ca_10548_v3' => 'car', 'Ca_19913_v3' => 'car', 'Ca_19916_v3' => 'car', 'Ca_19975_v3' => 'car', 'CBR_g22876' => 'cbr', 'CBR_g22879' => 'cbr', 'CBR_g38491' => 'cbr', 'CBR_g54185' => 'cbr', 'CBR_g54190' => 'cbr', 'Cc02_g11020' => 'ccan', 'Cc02_g23920' => 'ccan', 'Cc02_g39860' => 'ccan', 'Cc02_g39870' => 'ccan', 'Cc03_g06760' => 'ccan', 'Cc06_g02450' => 'ccan', 'Cc09_g09450' => 'ccan', 'CDE02G1959' => 'cde', 'CDE04G0600' => 'cde', 'CDE07G1996' => 'cde', 'CDE07G2078' => 'cde', 'CDE11G0611' => 'cde', 'Cfa001683' => 'cfa', 'Cfa001734' => 'cfa', 'Cfa001737' => 'cfa', 'Cfa003751' => 'cfa', 'Cfa012019' => 'cfa', 'Cfa017353' => 'cfa', 'Cfa017732' => 'cfa', 'Cfa022464' => 'cfa', 'Ciclev10012400m.g' => 'ccl', 'Ciclev10021242m.g' => 'ccl', 'Ciclev10021302m.g' => 'ccl', 'Ciclev10021463m.g' => 'ccl', 'Ciclev10032359m.g' => 'ccl', 'CiPaw.01G081000' => 'cil', 'CiPaw.01G262500' => 'cil', 'CiPaw.01G269800' => 'cil', 'CiPaw.02G168400' => 'cil', 'CiPaw.05G119500' => 'cil', 'CiPaw.11G147300' => 'cil', 'ClCG01G003630' => 'cla', 'ClCG05G000510' => 'cla', 'ClCG05G002300' => 'cla', 'ClCG08G007650' => 'cla', 'ClCG10G021250' => 'cla', 'COL.COLO4_06218' => 'col', 'COL.COLO4_12538' => 'col', 'COL.COLO4_14775' => 'col', 'COL.COLO4_23875' => 'col', 'Cpa.g.sc141.16' => 'cpa', 'Cpa.g.sc169.16' => 'cpa', 'Cpa.g.sc244.4' => 'cpa', 'Cpa.g.sc244.5' => 'cpa', 'Cpa.g.sc29.87' => 'cpa', 'Cpa.g.sc53.115' => 'cpa', 'Cre03.g207502' => 'cre', 'Cre06.g277000' => 'cre', 'Cre09.g394050' => 'cre', 'CsaV3_3G007680' => 'csa', 'CsaV3_3G009710' => 'csa', 'CsaV3_3G034790' => 'csa', 'CsaV3_5G003750' => 'csa', 'CsaV3_6G036620' => 'csa', 'CSS0002288' => 'camsi', 'CSS0011250' => 'camsi', 'CSS0021619' => 'camsi', 'CSS0046701' => 'camsi', 'DCAR_006420' => 'dca', 'DCAR_006865' => 'dca', 'DCAR_008558' => 'dca', 'DCAR_028754' => 'dca', 'DCAR_028755' => 'dca', 'Dinv31218' => 'din', 'Dinv32371' => 'din', 'Dinv34250' => 'din', 'Dinv37156' => 'din', 'Dinv43704' => 'din', 'Duzib093G1811' => 'dzi', 'Duzib106G1622' => 'dzi', 'Duzib114G0504' => 'dzi', 'Duzib128G0338' => 'dzi', 'Duzib128G1577' => 'dzi', 'Duzib133G0104' => 'dzi', 'Duzib133G1080' => 'dzi', 'Duzib138G0324' => 'dzi', 'Duzib138G0394' => 'dzi', 'Duzib205G0122' => 'dzi', 'Duzib268G1020' => 'dzi', 'Duzib268G1359' => 'dzi', 'ECA232G3929' => 'eca', 'ECA236G2210' => 'eca', 'ECA236G2287' => 'eca', 'ECA240G4568' => 'eca', 'ECA247G0894' => 'eca', 'EL10Ac1g00200' => 'bvu', 'EL10Ac1g00886' => 'bvu', 'EL10As1g23091' => 'bvu', 'EL10As1g23092' => 'bvu', 'Eucgr.A01284' => 'egr', 'Eucgr.A01285' => 'egr', 'Eucgr.D02456' => 'egr', 'Eucgr.E00018' => 'egr', 'Eucgr.E01439' => 'egr', 'Eucgr.G02859' => 'egr', 'FAN01G0168' => 'fan', 'FAN01G0453' => 'fan', 'FAN01G2761' => 'fan', 'FAN02G1239' => 'fan', 'FAN03G0645' => 'fan', 'FAN03G2707' => 'fan', 'FAN03G2978' => 'fan', 'FAN04G0227' => 'fan', 'FAN06G0091' => 'fan', 'FAN06G1418' => 'fan', 'FAN06G1512' => 'fan', 'FAN06G1986' => 'fan', 'FAN06G2905' => 'fan', 'FAN06G4325' => 'fan', 'FAN08G0033' => 'fan', 'FAN09G0642' => 'fan', 'FAN10G1763' => 'fan', 'FAN10G2026' => 'fan', 'FAN10G2513' => 'fan', 'FAN10G3402' => 'fan', 'FAN10G3564' => 'fan', 'FAN10G3987' => 'fan', 'FAN13G1490' => 'fan', 'FAN14G5857' => 'fan', 'FAN18G1188' => 'fan', 'FvH4_5g00750' => 'fve', 'FvH4_6g13410' => 'fve', 'FvH4_7g11740' => 'fve', 'FvH4_7g17410' => 'fve', 'FvH4_7g18860' => 'fve', 'Glyma.01G099100' => 'gma', 'Glyma.01G142300' => 'gma', 'Glyma.03G025500' => 'gma', 'Glyma.03G069700' => 'gma', 'Glyma.03G260000' => 'gma', 'Glyma.09G269800' => 'gma', 'Glyma.10G208700' => 'gma', 'Glyma.18G220400' => 'gma', 'Glyma.20G182000' => 'gma', 'Gohir.A01G221726' => 'ghi', 'Gohir.A07G134600' => 'ghi', 'Gohir.A07G146000' => 'ghi', 'Gohir.A08G173900' => 'ghi', 'Gohir.A09G194900' => 'ghi', 'Gohir.A10G204100' => 'ghi', 'Gohir.A11G080600' => 'ghi', 'Gohir.A11G327500' => 'ghi', 'Gohir.A12G101800' => 'ghi', 'Gohir.D01G211200' => 'ghi', 'Gohir.D07G139200' => 'ghi', 'Gohir.D07G152100' => 'ghi', 'Gohir.D08G192600' => 'ghi', 'Gohir.D09G189200' => 'ghi', 'Gohir.D10G212000' => 'ghi', 'Gohir.D11G085200' => 'ghi', 'Gohir.D11G346400' => 'ghi', 'Gohir.D12G104800' => 'ghi', 'Gorai.001G151300' => 'gra', 'Gorai.001G174100' => 'gra', 'Gorai.002G257000' => 'gra', 'Gorai.004G202600' => 'gra', 'Gorai.007G090900' => 'gra', 'Gorai.007G376700' => 'gra', 'Gorai.008G114100' => 'gra', 'Gorai.011G237900' => 'gra', 'GSVIVG01005450001' => 'vvi', 'GSVIVG01016232001' => 'vvi', 'GSVIVG01026157001' => 'vvi', 'GSVIVG01027419001' => 'vvi', 'GSVIVG01027631001' => 'vvi', 'GSVIVG01034143001' => 'vvi', 'HanXRQChr03g0093921' => 'han', 'HanXRQChr04g0120001' => 'han', 'HanXRQChr04g0122561' => 'han', 'HanXRQChr09g0246851' => 'han', 'HanXRQChr10g0293311' => 'han', 'HanXRQChr13g0425231' => 'han', 'HanXRQChr16g0532571' => 'han', 'Haze_09050' => 'cav', 'Haze_15715' => 'cav', 'Haze_15716' => 'cav', 'Haze_16803' => 'cav', 'Haze_16850' => 'cav', 'Hma1.2p1_0301F.1_g118655' => 'hma', 'Hma1.2p1_0309F.1_g120590' => 'hma', 'Hma1.2p1_0936F.1_g238900' => 'hma', 'Hma1.2p1_3552F.1_g336740' => 'hma', 'HPP92_003520' => 'vpl', 'HPP92_006628' => 'vpl', 'HPP92_006645' => 'vpl', 'HPP92_014669' => 'vpl', 'HPP92_015077' => 'vpl', 'Hund16742' => 'sun', 'Hund17022' => 'sun', 'Lalb_Chr02g0152131' => 'lal', 'Lalb_Chr05g0225371' => 'lal', 'Lalb_Chr07g0189841' => 'lal', 'Lalb_Chr07g0192961' => 'lal', 'Lalb_Chr12g0208221' => 'lal', 'Lalb_Chr13g0291211' => 'lal', 'Lalb_Chr13g0291781' => 'lal', 'Lalb_Chr18g0044651' => 'lal', 'Lalb_Chr21g0313731' => 'lal', 'Lj1g0022533' => 'lja', 'Lj2A18T50' => 'lonja', 'Lj2A92G93' => 'lonja', 'Lj3A965T73' => 'lonja', 'Lj3g0000673' => 'lja', 'Lj3g0002666' => 'lja', 'Lj4g0016985' => 'lja', 'Lj5g0003625' => 'lja', 'Lj7A529G36' => 'lonja', 'Lj9A569T49' => 'lonja', 'Lj9A604T63' => 'lonja', 'Lsat_1_v5_gn_3_132060' => 'lsa', 'Lsat_1_v5_gn_4_68941' => 'lsa', 'Lsat_1_v5_gn_5_95580' => 'lsa', 'Lsat_1_v5_gn_7_161' => 'lsa', 'Lsat_1_v5_gn_7_7041' => 'lsa', 'Lsat_1_v5_gn_9_33481' => 'lsa', 'Lsat_1_v5_gn_9_68260' => 'lsa', 'Manes.01G073100' => 'mes', 'Manes.01G266300' => 'mes', 'Manes.02G033300' => 'mes', 'Manes.05G017900' => 'mes', 'Manes.05G046100' => 'mes', 'Manes.08G080900' => 'mes', 'Manes.10G049400' => 'mes', 'Mapoly0009s0186' => 'mpo', 'Mapoly0036s0118' => 'mpo', 'Mapoly0101s0046' => 'mpo', 'MBI04_g30218_MAGBIO' => 'mbi', 'MBI04_g35564_MAGBIO' => 'mbi', 'MBI12_g34011_MAGBIO' => 'mbi', 'MBI14_g04655_MAGBIO' => 'mbi', 'MCO07G653' => 'mco', 'MCO10G173' => 'mco', 'MD01G1087100' => 'mdo', 'MD01G1104200' => 'mdo', 'MD02G1205100' => 'mdo', 'MD04G1079200' => 'mdo', 'MD04G1131400' => 'mdo', 'MD07G1121600' => 'mdo', 'MD07G1157300' => 'mdo', 'MD07G1171000' => 'mdo', 'MD12G1144500' => 'mdo', 'Medtr1g094610' => 'mtr', 'Medtr4g021795' => 'mtr', 'Medtr4g023760' => 'mtr', 'Medtr7g118050' => 'mtr', 'MELO3C005582.2' => 'cme', 'MELO3C005989.2' => 'cme', 'MELO3C006192.2' => 'cme', 'MELO3C009248.2' => 'cme', 'MELO3C019817.2' => 'cme', 'Migut.B01625' => 'egut', 'Migut.B01915' => 'egut', 'Migut.F01721' => 'egut', 'Migut.J00314' => 'egut', 'MSTRG.20742' => 'ama', 'MSTRG.8134' => 'ama', 'Nitab4.5_0000096g0010' => 'nta', 'Nitab4.5_0000202g0030' => 'nta', 'Nitab4.5_0000216g0370' => 'nta', 'Nitab4.5_0000457g0230' => 'nta', 'Nitab4.5_0001702g0170' => 'nta', 'Nitab4.5_0003607g0010' => 'nta', 'Nitab4.5_0004917g0020' => 'nta', 'Nitab4.5_0007059g0010' => 'nta', 'Nitab4.5_0007184g0010' => 'nta', 'Nitab4.5_0007346g0020' => 'nta', 'Nn1g00410' => 'nnu', 'Nn1g01252' => 'nnu', 'Nn2g11168' => 'nnu', 'Nn2g13403' => 'nnu', 'Nn2g13760' => 'nnu', 'Nn4g26380' => 'nnu', 'Oeu000806.2' => 'oeu', 'Oeu005788.1' => 'oeu', 'Oeu006900.3' => 'oeu', 'Oeu007797.1' => 'oeu', 'Oeu011932.1' => 'oeu', 'Oeu022739.1' => 'oeu', 'Oeu037918.1' => 'oeu', 'Oeu055490.2' => 'oeu', 'Os01g0844400' => 'osa', 'Os02g0819100' => 'osa', 'Os03g0804300' => 'osa', 'Os05g0458000' => 'osa', 'Os07g0467800' => 'osa', 'Os12g0602200' => 'osa', 'Peaxi162Scf00013g03444' => 'pax', 'Peaxi162Scf00094g01120' => 'pax', 'Peaxi162Scf00191g01211' => 'pax', 'Peaxi162Scf00238g01110' => 'pax', 'Peaxi162Scf00330g00719' => 'pax', 'Peaxi162Scf00627g00018' => 'pax', 'PGR031G2686' => 'pgr', 'PGR042G0809' => 'pgr', 'PGR142G0193' => 'pgr', 'PGSC0003DMG400011066' => 'stu', 'PGSC0003DMG400012041' => 'stu', 'PGSC0003DMG400013678' => 'stu', 'PGSC0003DMG400023477' => 'stu', 'PGSC0003DMG400025956' => 'stu', 'PGSC0003DMG401019151' => 'stu', 'Phvul.006G116400' => 'pvu', 'Phvul.007G097300' => 'pvu', 'Phvul.010G015000' => 'pvu', 'Phvul.010G083900' => 'pvu', 'Potri.001G117100' => 'ptr', 'Potri.002G147300' => 'ptr', 'Potri.003G115600' => 'ptr', 'Potri.006G087400' => 'ptr', 'Potri.010G226100' => 'ptr', 'Potri.014G069200' => 'ptr', 'Potri.014G104000' => 'ptr', 'Potri.016G100200' => 'ptr', 'Pp3c10_20450' => 'ppa', 'Pp3c1_42400' => 'ppa', 'Pp3c3_24390' => 'ppa', 'Pp3c3_2860' => 'ppa', 'PRCOL_00003193' => 'pco', 'Prupe.2G144500' => 'ppe', 'Prupe.2G195700' => 'ppe', 'Prupe.2G209800' => 'ppe', 'Prupe.5G080000' => 'ppe', 'Prupe.6G257900' => 'ppe', 'Psat3g001160' => 'psa', 'Psat6g181880' => 'psa', 'Psat7g233720' => 'psa', 'PSO063G7587' => 'pso', 'PSO339G2145' => 'pso', 'PSO339G3369' => 'pso', 'PSO478G2747' => 'pso', 'PSO513G0140' => 'pso', 'PSO782G1614' => 'pso', 'PSO782G4889' => 'pso', 'PSO782G5485' => 'pso', 'PSO801G0241' => 'pso', 'QL07p048854' => 'qlo', 'QL08p046745' => 'qlo', 'QL08p052606' => 'qlo', 'QL08p053414' => 'qlo', 'QL08p054868' => 'qlo', 'RcHm_v2.0_Chr1g0350251' => 'rch', 'RcHm_v2.0_Chr1g0360851' => 'rch', 'RcHm_v2.0_Chr1g0362791' => 'rch', 'RcHm_v2.0_Chr3g0466281' => 'rch', 'RcHm_v2.0_Chr7g0201481' => 'rch', 'Rhsim01G0148600' => 'rsi', 'Rhsim05G0194400' => 'rsi', 'Rhsim07G0000700' => 'rsi', 'Rhsim07G0000800' => 'rsi', 'Rhsim07G0027900' => 'rsi', 'Rhsim09G0149500' => 'rsi', 'RhsimUnG0186900' => 'rsi', 'Sabra01G0089900' => 'sbr', 'Sabra02G0114700' => 'sbr', 'Sabra02G0116300' => 'sbr', 'Sabra03G0080100' => 'sbr', 'Sabra08G0024300' => 'sbr', 'Sabra10G0174300' => 'sbr', 'Sabra14G0048900' => 'sbr', 'Sabra14G0076500' => 'sbr', 'SalBow5G2513' => 'sbo', 'Sc01g0002300' => 'sci', 'Sc01g0004450' => 'sci', 'Sc06g0001680' => 'sci', 'Sc23g0003580' => 'sci', 'Sed0000913' => 'sed', 'Sed0001655' => 'sed', 'Sed0007745' => 'sed', 'Sed0010951' => 'sed', 'Sed0017599' => 'sed', 'Sed0021405' => 'sed', 'Sed0022810' => 'sed', 'SEGI_07099' => 'sgi', 'SEGI_11931' => 'sgi', 'SEGI_13187' => 'sgi', 'SEGI_29958' => 'sgi', 'SEGI_36351' => 'sgi', 'SGA_v2.0_scaffold126G33770' => 'sas', 'SGA_v2.0_scaffold153G37003' => 'sas', 'SGA_v2.0_scaffold2G01359' => 'sas', 'SGA_v2.0_scaffold5G03064' => 'sas', 'SGA_v2.0_scaffold95G28903' => 'sas', 'SHI12701' => 'shi', 'SHI26410' => 'shi', 'SHI38997' => 'shi', 'SHI53759' => 'shi', 'SHI53886' => 'shi', 'SHI54714' => 'shi', 'SMO011G0041' => 'smo', 'SMO146G0251' => 'smo', 'SMO160G0004' => 'smo', 'SMO174G0057' => 'smo', 'SMO244G0089' => 'smo', 'SMO296G0011' => 'smo', 'Solyc01g091280.3' => 'sly', 'Solyc05g047610.3' => 'sly', 'Solyc05g047640.3' => 'sly', 'Solyc05g055630.3' => 'sly', 'Solyc10g018160.2' => 'sly', 'Solyc10g084820.2' => 'sly', 'Solyc10g086565.2' => 'sly', 'Sopen01g037030' => 'spe', 'Sopen05g027920' => 'spe', 'Sopen05g034070' => 'spe', 'Sopen10g007260' => 'spe', 'Sopen10g034260' => 'spe', 'Sopen10g035950' => 'spe', 'Sp3g07710' => 'spa', 'Sp4g27420' => 'spa', 'Sp5g02450' => 'spa', 'Sp6g01280' => 'spa', 'Sp6g38480' => 'spa', 'Sp7g20780' => 'spa', 'TAR374G1413' => 'tar', 'TAR623G1777' => 'tar', 'TAR629G2370' => 'tar', 'TAR633G1759' => 'tar', 'TAR636G3387' => 'tar', 'THA.LOC104802447' => 'tha', 'THA.LOC104813916' => 'tha', 'THA.LOC104816423' => 'tha', 'THA.LOC104817246' => 'tha', 'THA.LOC104825895' => 'tha', 'Thecc.01G335200' => 'tca', 'Thecc.01G377400' => 'tca', 'Thecc.03G262200' => 'tca', 'Thecc.05G036800' => 'tca', 'Thecc.10G080500' => 'tca', 'Thecc.10G080800' => 'tca', 'Thhalv10001560m.g' => 'esa', 'Thhalv10006120m.g' => 'esa', 'Thhalv10014375m.g' => 'esa', 'Thhalv10021264m.g' => 'esa', 'Thhalv10028856m.g' => 'esa', 'TPR.G1914' => 'tpr', 'TPR.G4757' => 'tpr', 'TPR.G5595' => 'tpr', 'TWI14G0952' => 'twi', 'TWI14G1307' => 'twi', 'TWI38G2143' => 'twi', 'TWI59G0826' => 'twi', 'TWI77G0527' => 'twi', 'TWI81G0150' => 'twi', 'unitig_21.g21018' => 'ugi', 'unitig_26.g9725' => 'ugi', 'unitig_744.g24653' => 'ugi', 'unitig_749.g13778' => 'ugi', 'unitig_899.g15035' => 'ugi', 'vmacro04296' => 'vma', 'vmacro04852' => 'vma', 'vmacro13404' => 'vma', 'vmacro20169' => 'vma', 'vmacro21014' => 'vma', 'VMungo0331G0237' => 'vmu', 'VMungo0331G0706' => 'vmu', 'VMungo0331G1361' => 'vmu', 'VMungo0331G1489' => 'vmu', 'VMungo0540G1037' => 'vmu', 'VMungo0720G2487' => 'vmu', 'VMungo0720G2721' => 'vmu', 'Zm00001eb086860' => 'zma', 'Zm00001eb104760' => 'zma', 'Zm00001eb148220' => 'zma', 'Zm00001eb259030' => 'zma', 'Zm00001eb289590' => 'zma', 'Zm00001eb420150' => 'zma' ) $gf_id = 'HOM05D000968' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000968' ) $data_identifier = 'HOM05D000968' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 19, 'bol' => (int) 9, 'bra' => (int) 12, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 5, 'ccan' => (int) 7, 'cde' => (int) 5, 'cfa' => (int) 8, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 4, 'dca' => (int) 5, 'din' => (int) 5, 'dzi' => (int) 12, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 25, 'fve' => (int) 5, 'gma' => (int) 9, 'ghi' => (int) 18, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 7, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 5, 'sun' => (int) 2, 'lal' => (int) 9, 'lja' => (int) 5, 'lonja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 9, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 2, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 3, 'stu' => (int) 6, 'pvu' => (int) 4, 'ptr' => (int) 8, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 3, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 1, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 5, 'sas' => (int) 5, 'shi' => (int) 6, 'smo' => (int) 6, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 3, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420150' $species_info = array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ) $local_species = 'spe' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000968', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p31690' => 'bna', 'A03p36040' => 'bna', 'A03p53730' => 'bna', 'A04p01410' => 'bna', 'A05p05420' => 'bna', 'A05p39630' => 'bna', 'A05p39640' => 'bna', 'A09p00970' => 'bna', 'A09p53060' => 'bna', 'A10p31890' => 'bna', 'Aa31LG10G15040' => 'aar', 'Aa31LG1G21090' => 'aar', 'Aa31LG1G26900' => 'aar', 'Aa31LG3G1820' => 'aar', 'Aa31LG5G1100' => 'aar', 'Aa31LG6G4740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2265' => 'aag', 'Actinidia07998' => 'ach', 'Actinidia11266' => 'ach', 'Actinidia12682' => 'ach', 'Actinidia26479' => 'ach', 'Actinidia31406' => 'ach', 'Actinidia32437' => 'ach', 'Actinidia38862' => 'ach', 'Ah.05g174230' => 'amhyb', 'Ah.05g179070' => 'amhyb', 'Ah.05g179090' => 'amhyb', 'Ah.12g059950' => 'amhyb', 'AL3G20480' => 'aly', 'AL4G44520' => 'aly', 'AL5G43110' => 'aly', 'AL6G13890' => 'aly', 'AL6G52620' => 'aly', 'AL7G30830' => 'aly', 'Aqoxy1G00899' => 'aox', 'Aqoxy5G04333' => 'aox', 'Aqoxy7G00641' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3IZ0NN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4EF6AW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W9P8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79GA3M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C43NQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFCU6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G95YVJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCHK29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LU1UG8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX91RN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGB4B1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8DA0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9H7JI' => 'arhy', 'AT3G09320' => 'ath', 'AT3G60800' => 'ath', 'AT4G00840' => 'ath', 'AT4G22750' => 'ath', 'AT5G04270' => 'ath', 'ATR0090G003' => 'atr', 'ATR0559G349' => 'atr', 'ATR0680G261' => 'atr', 'ATR0810G048' => 'atr', 'Atru.chr12.831' => 'acertr', 'Atru.chr5.303' => 'acertr', 'Atru.chr5.748' => 'acertr', 'Atru.chr8.1999' => 'acertr', 'Atru.chr9.1436' => 'acertr', 'AUR62004211' => 'cqu', 'AUR62004548' => 'cqu', 'AUR62013637' => 'cqu', 'AUR62022662' => 'cqu', 'AUR62025777' => 'cqu', 'AUR62042386' => 'cqu', 'BcaB01g02310' => 'bca', 'BcaB01g06062' => 'bca', 'BcaB02g08975' => 'bca', 'BcaB02g08980' => 'bca', 'BcaC01g04228' => 'bca', 'BcaC01g06830' => 'bca', 'BcaC02g10186' => 'bca', 'BcaC02g12214' => 'bca', 'BcaC04g24101' => 'bca', 'BcaC05g29520' => 'bca', 'BcaC05g29661' => 'bca', 'BcaC06g32130' => 'bca', 'BcaC06g32131' => 'bca', 'BcaC07g40601' => 'bca', 'BcaC07g42641' => 'bca', 'BcaNung01038' => 'bca', 'BcaNung01676' => 'bca', 'BcaNung02480' => 'bca', 'BcaNung07376' => 'bca', 'BolC3t16146H' => 'bol', 'BolC3t16637H' => 'bol', 'BolC4t22257H' => 'bol', 'BolC4t24728H' => 'bol', 'BolC5t34517H' => 'bol', 'BolC7t45703H' => 'bol', 'BolC8t51166H' => 'bol', 'BolC9t53038H' => 'bol', 'BolC9t60000H' => 'bol', 'BraA01t01345Z' => 'bra', 'BraA01t01346Z' => 'bra', 'BraA01t01348Z' => 'bra', 'BraA03t12347Z' => 'bra', 'BraA03t12775Z' => 'bra', 'BraA03t14439Z' => 'bra', 'BraA04t15860Z' => 'bra', 'BraA05t19511Z' => 'bra', 'BraA05t22746Z' => 'bra', 'BraA09t35767Z' => 'bra', 'BraA09t40732Z' => 'bra', 'BraA10t45233Z' => 'bra', 'C03p38720' => 'bna', 'C03p43680' => 'bna', 'C04p06350' => 'bna', 'C04p31800' => 'bna', 'C05p58680' => 'bna', 'C07p52110' => 'bna', 'C08p35760' => 'bna', 'C09p01050' => 'bna', 'C09p72600' => 'bna', 'CAN.G106.2' => 'can', 'CAN.G1482.1' => 'can', 'CAN.G324.12' => 'can', 'CAN.G388.20' => 'can', 'CAN.G412.7' => 'can', 'CAN.G694.32' => 'can', 'CAN.G92.12' => 'can', 'CANSAT11G2353' => 'cansat', 'CANSAT21G1398' => 'cansat', 'CANSAT56G2456' => 'cansat', 'CANSAT56G3031' => 'cansat', 'CANSAT56G4539' => 'cansat', 'CARHR083680' => 'chi', 'CARHR171190' => 'chi', 'CARHR209010' => 'chi', 'CARHR229680' => 'chi', 'CARHR249490' => 'chi', 'Carub.0003s0844' => 'cru', 'Carub.0005s2755' => 'cru', 'Carub.0006s0322' => 'cru', 'Carub.0006s3586' => 'cru', 'Carub.0007s1855' => 'cru', 'Ca_07808_v3' => 'car', 'Ca_09535_v3' => 'car', 'Ca_10548_v3' => 'car', 'Ca_19913_v3' => 'car', 'Ca_19916_v3' => 'car', 'Ca_19975_v3' => 'car', 'CBR_g22876' => 'cbr', 'CBR_g22879' => 'cbr', 'CBR_g38491' => 'cbr', 'CBR_g54185' => 'cbr', 'CBR_g54190' => 'cbr', 'Cc02_g11020' => 'ccan', 'Cc02_g23920' => 'ccan', 'Cc02_g39860' => 'ccan', 'Cc02_g39870' => 'ccan', 'Cc03_g06760' => 'ccan', 'Cc06_g02450' => 'ccan', 'Cc09_g09450' => 'ccan', 'CDE02G1959' => 'cde', 'CDE04G0600' => 'cde', 'CDE07G1996' => 'cde', 'CDE07G2078' => 'cde', 'CDE11G0611' => 'cde', 'Cfa001683' => 'cfa', 'Cfa001734' => 'cfa', 'Cfa001737' => 'cfa', 'Cfa003751' => 'cfa', 'Cfa012019' => 'cfa', 'Cfa017353' => 'cfa', 'Cfa017732' => 'cfa', 'Cfa022464' => 'cfa', 'Ciclev10012400m.g' => 'ccl', 'Ciclev10021242m.g' => 'ccl', 'Ciclev10021302m.g' => 'ccl', 'Ciclev10021463m.g' => 'ccl', 'Ciclev10032359m.g' => 'ccl', 'CiPaw.01G081000' => 'cil', 'CiPaw.01G262500' => 'cil', 'CiPaw.01G269800' => 'cil', 'CiPaw.02G168400' => 'cil', 'CiPaw.05G119500' => 'cil', 'CiPaw.11G147300' => 'cil', 'ClCG01G003630' => 'cla', 'ClCG05G000510' => 'cla', 'ClCG05G002300' => 'cla', 'ClCG08G007650' => 'cla', 'ClCG10G021250' => 'cla', 'COL.COLO4_06218' => 'col', 'COL.COLO4_12538' => 'col', 'COL.COLO4_14775' => 'col', 'COL.COLO4_23875' => 'col', 'Cpa.g.sc141.16' => 'cpa', 'Cpa.g.sc169.16' => 'cpa', 'Cpa.g.sc244.4' => 'cpa', 'Cpa.g.sc244.5' => 'cpa', 'Cpa.g.sc29.87' => 'cpa', 'Cpa.g.sc53.115' => 'cpa', 'Cre03.g207502' => 'cre', 'Cre06.g277000' => 'cre', 'Cre09.g394050' => 'cre', 'CsaV3_3G007680' => 'csa', 'CsaV3_3G009710' => 'csa', 'CsaV3_3G034790' => 'csa', 'CsaV3_5G003750' => 'csa', 'CsaV3_6G036620' => 'csa', 'CSS0002288' => 'camsi', 'CSS0011250' => 'camsi', 'CSS0021619' => 'camsi', 'CSS0046701' => 'camsi', 'DCAR_006420' => 'dca', 'DCAR_006865' => 'dca', 'DCAR_008558' => 'dca', 'DCAR_028754' => 'dca', 'DCAR_028755' => 'dca', 'Dinv31218' => 'din', 'Dinv32371' => 'din', 'Dinv34250' => 'din', 'Dinv37156' => 'din', 'Dinv43704' => 'din', 'Duzib093G1811' => 'dzi', 'Duzib106G1622' => 'dzi', 'Duzib114G0504' => 'dzi', 'Duzib128G0338' => 'dzi', 'Duzib128G1577' => 'dzi', 'Duzib133G0104' => 'dzi', 'Duzib133G1080' => 'dzi', 'Duzib138G0324' => 'dzi', 'Duzib138G0394' => 'dzi', 'Duzib205G0122' => 'dzi', 'Duzib268G1020' => 'dzi', 'Duzib268G1359' => 'dzi', 'ECA232G3929' => 'eca', 'ECA236G2210' => 'eca', 'ECA236G2287' => 'eca', 'ECA240G4568' => 'eca', 'ECA247G0894' => 'eca', 'EL10Ac1g00200' => 'bvu', 'EL10Ac1g00886' => 'bvu', 'EL10As1g23091' => 'bvu', 'EL10As1g23092' => 'bvu', 'Eucgr.A01284' => 'egr', 'Eucgr.A01285' => 'egr', 'Eucgr.D02456' => 'egr', 'Eucgr.E00018' => 'egr', 'Eucgr.E01439' => 'egr', 'Eucgr.G02859' => 'egr', 'FAN01G0168' => 'fan', 'FAN01G0453' => 'fan', 'FAN01G2761' => 'fan', 'FAN02G1239' => 'fan', 'FAN03G0645' => 'fan', 'FAN03G2707' => 'fan', 'FAN03G2978' => 'fan', 'FAN04G0227' => 'fan', 'FAN06G0091' => 'fan', 'FAN06G1418' => 'fan', 'FAN06G1512' => 'fan', 'FAN06G1986' => 'fan', 'FAN06G2905' => 'fan', 'FAN06G4325' => 'fan', 'FAN08G0033' => 'fan', 'FAN09G0642' => 'fan', 'FAN10G1763' => 'fan', 'FAN10G2026' => 'fan', 'FAN10G2513' => 'fan', 'FAN10G3402' => 'fan', 'FAN10G3564' => 'fan', 'FAN10G3987' => 'fan', 'FAN13G1490' => 'fan', 'FAN14G5857' => 'fan', 'FAN18G1188' => 'fan', 'FvH4_5g00750' => 'fve', 'FvH4_6g13410' => 'fve', 'FvH4_7g11740' => 'fve', 'FvH4_7g17410' => 'fve', 'FvH4_7g18860' => 'fve', 'Glyma.01G099100' => 'gma', 'Glyma.01G142300' => 'gma', 'Glyma.03G025500' => 'gma', 'Glyma.03G069700' => 'gma', 'Glyma.03G260000' => 'gma', 'Glyma.09G269800' => 'gma', 'Glyma.10G208700' => 'gma', 'Glyma.18G220400' => 'gma', 'Glyma.20G182000' => 'gma', 'Gohir.A01G221726' => 'ghi', 'Gohir.A07G134600' => 'ghi', 'Gohir.A07G146000' => 'ghi', 'Gohir.A08G173900' => 'ghi', 'Gohir.A09G194900' => 'ghi', 'Gohir.A10G204100' => 'ghi', 'Gohir.A11G080600' => 'ghi', 'Gohir.A11G327500' => 'ghi', 'Gohir.A12G101800' => 'ghi', 'Gohir.D01G211200' => 'ghi', 'Gohir.D07G139200' => 'ghi', 'Gohir.D07G152100' => 'ghi', 'Gohir.D08G192600' => 'ghi', 'Gohir.D09G189200' => 'ghi', 'Gohir.D10G212000' => 'ghi', 'Gohir.D11G085200' => 'ghi', 'Gohir.D11G346400' => 'ghi', 'Gohir.D12G104800' => 'ghi', 'Gorai.001G151300' => 'gra', 'Gorai.001G174100' => 'gra', 'Gorai.002G257000' => 'gra', 'Gorai.004G202600' => 'gra', 'Gorai.007G090900' => 'gra', 'Gorai.007G376700' => 'gra', 'Gorai.008G114100' => 'gra', 'Gorai.011G237900' => 'gra', 'GSVIVG01005450001' => 'vvi', 'GSVIVG01016232001' => 'vvi', 'GSVIVG01026157001' => 'vvi', 'GSVIVG01027419001' => 'vvi', 'GSVIVG01027631001' => 'vvi', 'GSVIVG01034143001' => 'vvi', 'HanXRQChr03g0093921' => 'han', 'HanXRQChr04g0120001' => 'han', 'HanXRQChr04g0122561' => 'han', 'HanXRQChr09g0246851' => 'han', 'HanXRQChr10g0293311' => 'han', 'HanXRQChr13g0425231' => 'han', 'HanXRQChr16g0532571' => 'han', 'Haze_09050' => 'cav', 'Haze_15715' => 'cav', 'Haze_15716' => 'cav', 'Haze_16803' => 'cav', 'Haze_16850' => 'cav', 'Hma1.2p1_0301F.1_g118655' => 'hma', 'Hma1.2p1_0309F.1_g120590' => 'hma', 'Hma1.2p1_0936F.1_g238900' => 'hma', 'Hma1.2p1_3552F.1_g336740' => 'hma', 'HPP92_003520' => 'vpl', 'HPP92_006628' => 'vpl', 'HPP92_006645' => 'vpl', 'HPP92_014669' => 'vpl', 'HPP92_015077' => 'vpl', 'Hund16742' => 'sun', 'Hund17022' => 'sun', 'Lalb_Chr02g0152131' => 'lal', 'Lalb_Chr05g0225371' => 'lal', 'Lalb_Chr07g0189841' => 'lal', 'Lalb_Chr07g0192961' => 'lal', 'Lalb_Chr12g0208221' => 'lal', 'Lalb_Chr13g0291211' => 'lal', 'Lalb_Chr13g0291781' => 'lal', 'Lalb_Chr18g0044651' => 'lal', 'Lalb_Chr21g0313731' => 'lal', 'Lj1g0022533' => 'lja', 'Lj2A18T50' => 'lonja', 'Lj2A92G93' => 'lonja', 'Lj3A965T73' => 'lonja', 'Lj3g0000673' => 'lja', 'Lj3g0002666' => 'lja', 'Lj4g0016985' => 'lja', 'Lj5g0003625' => 'lja', 'Lj7A529G36' => 'lonja', 'Lj9A569T49' => 'lonja', 'Lj9A604T63' => 'lonja', 'Lsat_1_v5_gn_3_132060' => 'lsa', 'Lsat_1_v5_gn_4_68941' => 'lsa', 'Lsat_1_v5_gn_5_95580' => 'lsa', 'Lsat_1_v5_gn_7_161' => 'lsa', 'Lsat_1_v5_gn_7_7041' => 'lsa', 'Lsat_1_v5_gn_9_33481' => 'lsa', 'Lsat_1_v5_gn_9_68260' => 'lsa', 'Manes.01G073100' => 'mes', 'Manes.01G266300' => 'mes', 'Manes.02G033300' => 'mes', 'Manes.05G017900' => 'mes', 'Manes.05G046100' => 'mes', 'Manes.08G080900' => 'mes', 'Manes.10G049400' => 'mes', 'Mapoly0009s0186' => 'mpo', 'Mapoly0036s0118' => 'mpo', 'Mapoly0101s0046' => 'mpo', 'MBI04_g30218_MAGBIO' => 'mbi', 'MBI04_g35564_MAGBIO' => 'mbi', 'MBI12_g34011_MAGBIO' => 'mbi', 'MBI14_g04655_MAGBIO' => 'mbi', 'MCO07G653' => 'mco', 'MCO10G173' => 'mco', 'MD01G1087100' => 'mdo', 'MD01G1104200' => 'mdo', 'MD02G1205100' => 'mdo', 'MD04G1079200' => 'mdo', 'MD04G1131400' => 'mdo', 'MD07G1121600' => 'mdo', 'MD07G1157300' => 'mdo', 'MD07G1171000' => 'mdo', 'MD12G1144500' => 'mdo', 'Medtr1g094610' => 'mtr', 'Medtr4g021795' => 'mtr', 'Medtr4g023760' => 'mtr', 'Medtr7g118050' => 'mtr', 'MELO3C005582.2' => 'cme', 'MELO3C005989.2' => 'cme', 'MELO3C006192.2' => 'cme', 'MELO3C009248.2' => 'cme', 'MELO3C019817.2' => 'cme', 'Migut.B01625' => 'egut', 'Migut.B01915' => 'egut', 'Migut.F01721' => 'egut', 'Migut.J00314' => 'egut', 'MSTRG.20742' => 'ama', 'MSTRG.8134' => 'ama', 'Nitab4.5_0000096g0010' => 'nta', 'Nitab4.5_0000202g0030' => 'nta', 'Nitab4.5_0000216g0370' => 'nta', 'Nitab4.5_0000457g0230' => 'nta', 'Nitab4.5_0001702g0170' => 'nta', 'Nitab4.5_0003607g0010' => 'nta', 'Nitab4.5_0004917g0020' => 'nta', 'Nitab4.5_0007059g0010' => 'nta', 'Nitab4.5_0007184g0010' => 'nta', 'Nitab4.5_0007346g0020' => 'nta', 'Nn1g00410' => 'nnu', 'Nn1g01252' => 'nnu', 'Nn2g11168' => 'nnu', 'Nn2g13403' => 'nnu', 'Nn2g13760' => 'nnu', 'Nn4g26380' => 'nnu', 'Oeu000806.2' => 'oeu', 'Oeu005788.1' => 'oeu', 'Oeu006900.3' => 'oeu', 'Oeu007797.1' => 'oeu', 'Oeu011932.1' => 'oeu', 'Oeu022739.1' => 'oeu', 'Oeu037918.1' => 'oeu', 'Oeu055490.2' => 'oeu', 'Os01g0844400' => 'osa', 'Os02g0819100' => 'osa', 'Os03g0804300' => 'osa', 'Os05g0458000' => 'osa', 'Os07g0467800' => 'osa', 'Os12g0602200' => 'osa', 'Peaxi162Scf00013g03444' => 'pax', 'Peaxi162Scf00094g01120' => 'pax', 'Peaxi162Scf00191g01211' => 'pax', 'Peaxi162Scf00238g01110' => 'pax', 'Peaxi162Scf00330g00719' => 'pax', 'Peaxi162Scf00627g00018' => 'pax', 'PGR031G2686' => 'pgr', 'PGR042G0809' => 'pgr', 'PGR142G0193' => 'pgr', 'PGSC0003DMG400011066' => 'stu', 'PGSC0003DMG400012041' => 'stu', 'PGSC0003DMG400013678' => 'stu', 'PGSC0003DMG400023477' => 'stu', 'PGSC0003DMG400025956' => 'stu', 'PGSC0003DMG401019151' => 'stu', 'Phvul.006G116400' => 'pvu', 'Phvul.007G097300' => 'pvu', 'Phvul.010G015000' => 'pvu', 'Phvul.010G083900' => 'pvu', 'Potri.001G117100' => 'ptr', 'Potri.002G147300' => 'ptr', 'Potri.003G115600' => 'ptr', 'Potri.006G087400' => 'ptr', 'Potri.010G226100' => 'ptr', 'Potri.014G069200' => 'ptr', 'Potri.014G104000' => 'ptr', 'Potri.016G100200' => 'ptr', 'Pp3c10_20450' => 'ppa', 'Pp3c1_42400' => 'ppa', 'Pp3c3_24390' => 'ppa', 'Pp3c3_2860' => 'ppa', 'PRCOL_00003193' => 'pco', 'Prupe.2G144500' => 'ppe', 'Prupe.2G195700' => 'ppe', 'Prupe.2G209800' => 'ppe', 'Prupe.5G080000' => 'ppe', 'Prupe.6G257900' => 'ppe', 'Psat3g001160' => 'psa', 'Psat6g181880' => 'psa', 'Psat7g233720' => 'psa', 'PSO063G7587' => 'pso', 'PSO339G2145' => 'pso', 'PSO339G3369' => 'pso', 'PSO478G2747' => 'pso', 'PSO513G0140' => 'pso', 'PSO782G1614' => 'pso', 'PSO782G4889' => 'pso', 'PSO782G5485' => 'pso', 'PSO801G0241' => 'pso', 'QL07p048854' => 'qlo', 'QL08p046745' => 'qlo', 'QL08p052606' => 'qlo', 'QL08p053414' => 'qlo', 'QL08p054868' => 'qlo', 'RcHm_v2.0_Chr1g0350251' => 'rch', 'RcHm_v2.0_Chr1g0360851' => 'rch', 'RcHm_v2.0_Chr1g0362791' => 'rch', 'RcHm_v2.0_Chr3g0466281' => 'rch', 'RcHm_v2.0_Chr7g0201481' => 'rch', 'Rhsim01G0148600' => 'rsi', 'Rhsim05G0194400' => 'rsi', 'Rhsim07G0000700' => 'rsi', 'Rhsim07G0000800' => 'rsi', 'Rhsim07G0027900' => 'rsi', 'Rhsim09G0149500' => 'rsi', 'RhsimUnG0186900' => 'rsi', 'Sabra01G0089900' => 'sbr', 'Sabra02G0114700' => 'sbr', 'Sabra02G0116300' => 'sbr', 'Sabra03G0080100' => 'sbr', 'Sabra08G0024300' => 'sbr', 'Sabra10G0174300' => 'sbr', 'Sabra14G0048900' => 'sbr', 'Sabra14G0076500' => 'sbr', 'SalBow5G2513' => 'sbo', 'Sc01g0002300' => 'sci', 'Sc01g0004450' => 'sci', 'Sc06g0001680' => 'sci', 'Sc23g0003580' => 'sci', 'Sed0000913' => 'sed', 'Sed0001655' => 'sed', 'Sed0007745' => 'sed', 'Sed0010951' => 'sed', 'Sed0017599' => 'sed', 'Sed0021405' => 'sed', 'Sed0022810' => 'sed', 'SEGI_07099' => 'sgi', 'SEGI_11931' => 'sgi', 'SEGI_13187' => 'sgi', 'SEGI_29958' => 'sgi', 'SEGI_36351' => 'sgi', 'SGA_v2.0_scaffold126G33770' => 'sas', 'SGA_v2.0_scaffold153G37003' => 'sas', 'SGA_v2.0_scaffold2G01359' => 'sas', 'SGA_v2.0_scaffold5G03064' => 'sas', 'SGA_v2.0_scaffold95G28903' => 'sas', 'SHI12701' => 'shi', 'SHI26410' => 'shi', 'SHI38997' => 'shi', 'SHI53759' => 'shi', 'SHI53886' => 'shi', 'SHI54714' => 'shi', 'SMO011G0041' => 'smo', 'SMO146G0251' => 'smo', 'SMO160G0004' => 'smo', 'SMO174G0057' => 'smo', 'SMO244G0089' => 'smo', 'SMO296G0011' => 'smo', 'Solyc01g091280.3' => 'sly', 'Solyc05g047610.3' => 'sly', 'Solyc05g047640.3' => 'sly', 'Solyc05g055630.3' => 'sly', 'Solyc10g018160.2' => 'sly', 'Solyc10g084820.2' => 'sly', 'Solyc10g086565.2' => 'sly', 'Sopen01g037030' => 'spe', 'Sopen05g027920' => 'spe', 'Sopen05g034070' => 'spe', 'Sopen10g007260' => 'spe', 'Sopen10g034260' => 'spe', 'Sopen10g035950' => 'spe', 'Sp3g07710' => 'spa', 'Sp4g27420' => 'spa', 'Sp5g02450' => 'spa', 'Sp6g01280' => 'spa', 'Sp6g38480' => 'spa', 'Sp7g20780' => 'spa', 'TAR374G1413' => 'tar', 'TAR623G1777' => 'tar', 'TAR629G2370' => 'tar', 'TAR633G1759' => 'tar', 'TAR636G3387' => 'tar', 'THA.LOC104802447' => 'tha', 'THA.LOC104813916' => 'tha', 'THA.LOC104816423' => 'tha', 'THA.LOC104817246' => 'tha', 'THA.LOC104825895' => 'tha', 'Thecc.01G335200' => 'tca', 'Thecc.01G377400' => 'tca', 'Thecc.03G262200' => 'tca', 'Thecc.05G036800' => 'tca', 'Thecc.10G080500' => 'tca', 'Thecc.10G080800' => 'tca', 'Thhalv10001560m.g' => 'esa', 'Thhalv10006120m.g' => 'esa', 'Thhalv10014375m.g' => 'esa', 'Thhalv10021264m.g' => 'esa', 'Thhalv10028856m.g' => 'esa', 'TPR.G1914' => 'tpr', 'TPR.G4757' => 'tpr', 'TPR.G5595' => 'tpr', 'TWI14G0952' => 'twi', 'TWI14G1307' => 'twi', 'TWI38G2143' => 'twi', 'TWI59G0826' => 'twi', 'TWI77G0527' => 'twi', 'TWI81G0150' => 'twi', 'unitig_21.g21018' => 'ugi', 'unitig_26.g9725' => 'ugi', 'unitig_744.g24653' => 'ugi', 'unitig_749.g13778' => 'ugi', 'unitig_899.g15035' => 'ugi', 'vmacro04296' => 'vma', 'vmacro04852' => 'vma', 'vmacro13404' => 'vma', 'vmacro20169' => 'vma', 'vmacro21014' => 'vma', 'VMungo0331G0237' => 'vmu', 'VMungo0331G0706' => 'vmu', 'VMungo0331G1361' => 'vmu', 'VMungo0331G1489' => 'vmu', 'VMungo0540G1037' => 'vmu', 'VMungo0720G2487' => 'vmu', 'VMungo0720G2721' => 'vmu', 'Zm00001eb086860' => 'zma', 'Zm00001eb104760' => 'zma', 'Zm00001eb148220' => 'zma', 'Zm00001eb259030' => 'zma', 'Zm00001eb289590' => 'zma', 'Zm00001eb420150' => 'zma' ), 'gf_id' => 'HOM05D000968', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000968' ), 'data_identifier' => 'HOM05D000968', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000968', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p31690' => 'bna', 'A03p36040' => 'bna', 'A03p53730' => 'bna', 'A04p01410' => 'bna', 'A05p05420' => 'bna', 'A05p39630' => 'bna', 'A05p39640' => 'bna', 'A09p00970' => 'bna', 'A09p53060' => 'bna', 'A10p31890' => 'bna', 'Aa31LG10G15040' => 'aar', 'Aa31LG1G21090' => 'aar', 'Aa31LG1G26900' => 'aar', 'Aa31LG3G1820' => 'aar', 'Aa31LG5G1100' => 'aar', 'Aa31LG6G4740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2265' => 'aag', 'Actinidia07998' => 'ach', 'Actinidia11266' => 'ach', 'Actinidia12682' => 'ach', 'Actinidia26479' => 'ach', 'Actinidia31406' => 'ach', 'Actinidia32437' => 'ach', 'Actinidia38862' => 'ach', 'Ah.05g174230' => 'amhyb', 'Ah.05g179070' => 'amhyb', 'Ah.05g179090' => 'amhyb', 'Ah.12g059950' => 'amhyb', 'AL3G20480' => 'aly', 'AL4G44520' => 'aly', 'AL5G43110' => 'aly', 'AL6G13890' => 'aly', 'AL6G52620' => 'aly', 'AL7G30830' => 'aly', 'Aqoxy1G00899' => 'aox', 'Aqoxy5G04333' => 'aox', 'Aqoxy7G00641' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3IZ0NN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4EF6AW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W9P8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79GA3M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C43NQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFCU6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G95YVJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCHK29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LU1UG8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX91RN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGB4B1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8DA0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9H7JI' => 'arhy', 'AT3G09320' => 'ath', 'AT3G60800' => 'ath', 'AT4G00840' => 'ath', 'AT4G22750' => 'ath', 'AT5G04270' => 'ath', 'ATR0090G003' => 'atr', 'ATR0559G349' => 'atr', 'ATR0680G261' => 'atr', 'ATR0810G048' => 'atr', 'Atru.chr12.831' => 'acertr', 'Atru.chr5.303' => 'acertr', 'Atru.chr5.748' => 'acertr', 'Atru.chr8.1999' => 'acertr', 'Atru.chr9.1436' => 'acertr', 'AUR62004211' => 'cqu', 'AUR62004548' => 'cqu', 'AUR62013637' => 'cqu', 'AUR62022662' => 'cqu', 'AUR62025777' => 'cqu', 'AUR62042386' => 'cqu', 'BcaB01g02310' => 'bca', 'BcaB01g06062' => 'bca', 'BcaB02g08975' => 'bca', 'BcaB02g08980' => 'bca', 'BcaC01g04228' => 'bca', 'BcaC01g06830' => 'bca', 'BcaC02g10186' => 'bca', 'BcaC02g12214' => 'bca', 'BcaC04g24101' => 'bca', 'BcaC05g29520' => 'bca', 'BcaC05g29661' => 'bca', 'BcaC06g32130' => 'bca', 'BcaC06g32131' => 'bca', 'BcaC07g40601' => 'bca', 'BcaC07g42641' => 'bca', 'BcaNung01038' => 'bca', 'BcaNung01676' => 'bca', 'BcaNung02480' => 'bca', 'BcaNung07376' => 'bca', 'BolC3t16146H' => 'bol', 'BolC3t16637H' => 'bol', 'BolC4t22257H' => 'bol', 'BolC4t24728H' => 'bol', 'BolC5t34517H' => 'bol', 'BolC7t45703H' => 'bol', 'BolC8t51166H' => 'bol', 'BolC9t53038H' => 'bol', 'BolC9t60000H' => 'bol', 'BraA01t01345Z' => 'bra', 'BraA01t01346Z' => 'bra', 'BraA01t01348Z' => 'bra', 'BraA03t12347Z' => 'bra', 'BraA03t12775Z' => 'bra', 'BraA03t14439Z' => 'bra', 'BraA04t15860Z' => 'bra', 'BraA05t19511Z' => 'bra', 'BraA05t22746Z' => 'bra', 'BraA09t35767Z' => 'bra', 'BraA09t40732Z' => 'bra', 'BraA10t45233Z' => 'bra', 'C03p38720' => 'bna', 'C03p43680' => 'bna', 'C04p06350' => 'bna', 'C04p31800' => 'bna', 'C05p58680' => 'bna', 'C07p52110' => 'bna', 'C08p35760' => 'bna', 'C09p01050' => 'bna', 'C09p72600' => 'bna', 'CAN.G106.2' => 'can', 'CAN.G1482.1' => 'can', 'CAN.G324.12' => 'can', 'CAN.G388.20' => 'can', 'CAN.G412.7' => 'can', 'CAN.G694.32' => 'can', 'CAN.G92.12' => 'can', 'CANSAT11G2353' => 'cansat', 'CANSAT21G1398' => 'cansat', 'CANSAT56G2456' => 'cansat', 'CANSAT56G3031' => 'cansat', 'CANSAT56G4539' => 'cansat', 'CARHR083680' => 'chi', 'CARHR171190' => 'chi', 'CARHR209010' => 'chi', 'CARHR229680' => 'chi', 'CARHR249490' => 'chi', 'Carub.0003s0844' => 'cru', 'Carub.0005s2755' => 'cru', 'Carub.0006s0322' => 'cru', 'Carub.0006s3586' => 'cru', 'Carub.0007s1855' => 'cru', 'Ca_07808_v3' => 'car', 'Ca_09535_v3' => 'car', 'Ca_10548_v3' => 'car', 'Ca_19913_v3' => 'car', 'Ca_19916_v3' => 'car', 'Ca_19975_v3' => 'car', 'CBR_g22876' => 'cbr', 'CBR_g22879' => 'cbr', 'CBR_g38491' => 'cbr', 'CBR_g54185' => 'cbr', 'CBR_g54190' => 'cbr', 'Cc02_g11020' => 'ccan', 'Cc02_g23920' => 'ccan', 'Cc02_g39860' => 'ccan', 'Cc02_g39870' => 'ccan', 'Cc03_g06760' => 'ccan', 'Cc06_g02450' => 'ccan', 'Cc09_g09450' => 'ccan', 'CDE02G1959' => 'cde', 'CDE04G0600' => 'cde', 'CDE07G1996' => 'cde', 'CDE07G2078' => 'cde', 'CDE11G0611' => 'cde', 'Cfa001683' => 'cfa', 'Cfa001734' => 'cfa', 'Cfa001737' => 'cfa', 'Cfa003751' => 'cfa', 'Cfa012019' => 'cfa', 'Cfa017353' => 'cfa', 'Cfa017732' => 'cfa', 'Cfa022464' => 'cfa', 'Ciclev10012400m.g' => 'ccl', 'Ciclev10021242m.g' => 'ccl', 'Ciclev10021302m.g' => 'ccl', 'Ciclev10021463m.g' => 'ccl', 'Ciclev10032359m.g' => 'ccl', 'CiPaw.01G081000' => 'cil', 'CiPaw.01G262500' => 'cil', 'CiPaw.01G269800' => 'cil', 'CiPaw.02G168400' => 'cil', 'CiPaw.05G119500' => 'cil', 'CiPaw.11G147300' => 'cil', 'ClCG01G003630' => 'cla', 'ClCG05G000510' => 'cla', 'ClCG05G002300' => 'cla', 'ClCG08G007650' => 'cla', 'ClCG10G021250' => 'cla', 'COL.COLO4_06218' => 'col', 'COL.COLO4_12538' => 'col', 'COL.COLO4_14775' => 'col', 'COL.COLO4_23875' => 'col', 'Cpa.g.sc141.16' => 'cpa', 'Cpa.g.sc169.16' => 'cpa', 'Cpa.g.sc244.4' => 'cpa', 'Cpa.g.sc244.5' => 'cpa', 'Cpa.g.sc29.87' => 'cpa', 'Cpa.g.sc53.115' => 'cpa', 'Cre03.g207502' => 'cre', 'Cre06.g277000' => 'cre', 'Cre09.g394050' => 'cre', 'CsaV3_3G007680' => 'csa', 'CsaV3_3G009710' => 'csa', 'CsaV3_3G034790' => 'csa', 'CsaV3_5G003750' => 'csa', 'CsaV3_6G036620' => 'csa', 'CSS0002288' => 'camsi', 'CSS0011250' => 'camsi', 'CSS0021619' => 'camsi', 'CSS0046701' => 'camsi', 'DCAR_006420' => 'dca', 'DCAR_006865' => 'dca', 'DCAR_008558' => 'dca', 'DCAR_028754' => 'dca', 'DCAR_028755' => 'dca', 'Dinv31218' => 'din', 'Dinv32371' => 'din', 'Dinv34250' => 'din', 'Dinv37156' => 'din', 'Dinv43704' => 'din', 'Duzib093G1811' => 'dzi', 'Duzib106G1622' => 'dzi', 'Duzib114G0504' => 'dzi', 'Duzib128G0338' => 'dzi', 'Duzib128G1577' => 'dzi', 'Duzib133G0104' => 'dzi', 'Duzib133G1080' => 'dzi', 'Duzib138G0324' => 'dzi', 'Duzib138G0394' => 'dzi', 'Duzib205G0122' => 'dzi', 'Duzib268G1020' => 'dzi', 'Duzib268G1359' => 'dzi', 'ECA232G3929' => 'eca', 'ECA236G2210' => 'eca', 'ECA236G2287' => 'eca', 'ECA240G4568' => 'eca', 'ECA247G0894' => 'eca', 'EL10Ac1g00200' => 'bvu', 'EL10Ac1g00886' => 'bvu', 'EL10As1g23091' => 'bvu', 'EL10As1g23092' => 'bvu', 'Eucgr.A01284' => 'egr', 'Eucgr.A01285' => 'egr', 'Eucgr.D02456' => 'egr', 'Eucgr.E00018' => 'egr', 'Eucgr.E01439' => 'egr', 'Eucgr.G02859' => 'egr', 'FAN01G0168' => 'fan', 'FAN01G0453' => 'fan', 'FAN01G2761' => 'fan', 'FAN02G1239' => 'fan', 'FAN03G0645' => 'fan', 'FAN03G2707' => 'fan', 'FAN03G2978' => 'fan', 'FAN04G0227' => 'fan', 'FAN06G0091' => 'fan', 'FAN06G1418' => 'fan', 'FAN06G1512' => 'fan', 'FAN06G1986' => 'fan', 'FAN06G2905' => 'fan', 'FAN06G4325' => 'fan', 'FAN08G0033' => 'fan', 'FAN09G0642' => 'fan', 'FAN10G1763' => 'fan', 'FAN10G2026' => 'fan', 'FAN10G2513' => 'fan', 'FAN10G3402' => 'fan', 'FAN10G3564' => 'fan', 'FAN10G3987' => 'fan', 'FAN13G1490' => 'fan', 'FAN14G5857' => 'fan', 'FAN18G1188' => 'fan', 'FvH4_5g00750' => 'fve', 'FvH4_6g13410' => 'fve', 'FvH4_7g11740' => 'fve', 'FvH4_7g17410' => 'fve', 'FvH4_7g18860' => 'fve', 'Glyma.01G099100' => 'gma', 'Glyma.01G142300' => 'gma', 'Glyma.03G025500' => 'gma', 'Glyma.03G069700' => 'gma', 'Glyma.03G260000' => 'gma', 'Glyma.09G269800' => 'gma', 'Glyma.10G208700' => 'gma', 'Glyma.18G220400' => 'gma', 'Glyma.20G182000' => 'gma', 'Gohir.A01G221726' => 'ghi', 'Gohir.A07G134600' => 'ghi', 'Gohir.A07G146000' => 'ghi', 'Gohir.A08G173900' => 'ghi', 'Gohir.A09G194900' => 'ghi', 'Gohir.A10G204100' => 'ghi', 'Gohir.A11G080600' => 'ghi', 'Gohir.A11G327500' => 'ghi', 'Gohir.A12G101800' => 'ghi', 'Gohir.D01G211200' => 'ghi', 'Gohir.D07G139200' => 'ghi', 'Gohir.D07G152100' => 'ghi', 'Gohir.D08G192600' => 'ghi', 'Gohir.D09G189200' => 'ghi', 'Gohir.D10G212000' => 'ghi', 'Gohir.D11G085200' => 'ghi', 'Gohir.D11G346400' => 'ghi', 'Gohir.D12G104800' => 'ghi', 'Gorai.001G151300' => 'gra', 'Gorai.001G174100' => 'gra', 'Gorai.002G257000' => 'gra', 'Gorai.004G202600' => 'gra', 'Gorai.007G090900' => 'gra', 'Gorai.007G376700' => 'gra', 'Gorai.008G114100' => 'gra', 'Gorai.011G237900' => 'gra', 'GSVIVG01005450001' => 'vvi', 'GSVIVG01016232001' => 'vvi', 'GSVIVG01026157001' => 'vvi', 'GSVIVG01027419001' => 'vvi', 'GSVIVG01027631001' => 'vvi', 'GSVIVG01034143001' => 'vvi', 'HanXRQChr03g0093921' => 'han', 'HanXRQChr04g0120001' => 'han', 'HanXRQChr04g0122561' => 'han', 'HanXRQChr09g0246851' => 'han', 'HanXRQChr10g0293311' => 'han', 'HanXRQChr13g0425231' => 'han', 'HanXRQChr16g0532571' => 'han', 'Haze_09050' => 'cav', 'Haze_15715' => 'cav', 'Haze_15716' => 'cav', 'Haze_16803' => 'cav', 'Haze_16850' => 'cav', 'Hma1.2p1_0301F.1_g118655' => 'hma', 'Hma1.2p1_0309F.1_g120590' => 'hma', 'Hma1.2p1_0936F.1_g238900' => 'hma', 'Hma1.2p1_3552F.1_g336740' => 'hma', 'HPP92_003520' => 'vpl', 'HPP92_006628' => 'vpl', 'HPP92_006645' => 'vpl', 'HPP92_014669' => 'vpl', 'HPP92_015077' => 'vpl', 'Hund16742' => 'sun', 'Hund17022' => 'sun', 'Lalb_Chr02g0152131' => 'lal', 'Lalb_Chr05g0225371' => 'lal', 'Lalb_Chr07g0189841' => 'lal', 'Lalb_Chr07g0192961' => 'lal', 'Lalb_Chr12g0208221' => 'lal', 'Lalb_Chr13g0291211' => 'lal', 'Lalb_Chr13g0291781' => 'lal', 'Lalb_Chr18g0044651' => 'lal', 'Lalb_Chr21g0313731' => 'lal', 'Lj1g0022533' => 'lja', 'Lj2A18T50' => 'lonja', 'Lj2A92G93' => 'lonja', 'Lj3A965T73' => 'lonja', 'Lj3g0000673' => 'lja', 'Lj3g0002666' => 'lja', 'Lj4g0016985' => 'lja', 'Lj5g0003625' => 'lja', 'Lj7A529G36' => 'lonja', 'Lj9A569T49' => 'lonja', 'Lj9A604T63' => 'lonja', 'Lsat_1_v5_gn_3_132060' => 'lsa', 'Lsat_1_v5_gn_4_68941' => 'lsa', 'Lsat_1_v5_gn_5_95580' => 'lsa', 'Lsat_1_v5_gn_7_161' => 'lsa', 'Lsat_1_v5_gn_7_7041' => 'lsa', 'Lsat_1_v5_gn_9_33481' => 'lsa', 'Lsat_1_v5_gn_9_68260' => 'lsa', 'Manes.01G073100' => 'mes', 'Manes.01G266300' => 'mes', 'Manes.02G033300' => 'mes', 'Manes.05G017900' => 'mes', 'Manes.05G046100' => 'mes', 'Manes.08G080900' => 'mes', 'Manes.10G049400' => 'mes', 'Mapoly0009s0186' => 'mpo', 'Mapoly0036s0118' => 'mpo', 'Mapoly0101s0046' => 'mpo', 'MBI04_g30218_MAGBIO' => 'mbi', 'MBI04_g35564_MAGBIO' => 'mbi', 'MBI12_g34011_MAGBIO' => 'mbi', 'MBI14_g04655_MAGBIO' => 'mbi', 'MCO07G653' => 'mco', 'MCO10G173' => 'mco', 'MD01G1087100' => 'mdo', 'MD01G1104200' => 'mdo', 'MD02G1205100' => 'mdo', 'MD04G1079200' => 'mdo', 'MD04G1131400' => 'mdo', 'MD07G1121600' => 'mdo', 'MD07G1157300' => 'mdo', 'MD07G1171000' => 'mdo', 'MD12G1144500' => 'mdo', 'Medtr1g094610' => 'mtr', 'Medtr4g021795' => 'mtr', 'Medtr4g023760' => 'mtr', 'Medtr7g118050' => 'mtr', 'MELO3C005582.2' => 'cme', 'MELO3C005989.2' => 'cme', 'MELO3C006192.2' => 'cme', 'MELO3C009248.2' => 'cme', 'MELO3C019817.2' => 'cme', 'Migut.B01625' => 'egut', 'Migut.B01915' => 'egut', 'Migut.F01721' => 'egut', 'Migut.J00314' => 'egut', 'MSTRG.20742' => 'ama', 'MSTRG.8134' => 'ama', 'Nitab4.5_0000096g0010' => 'nta', 'Nitab4.5_0000202g0030' => 'nta', 'Nitab4.5_0000216g0370' => 'nta', 'Nitab4.5_0000457g0230' => 'nta', 'Nitab4.5_0001702g0170' => 'nta', 'Nitab4.5_0003607g0010' => 'nta', 'Nitab4.5_0004917g0020' => 'nta', 'Nitab4.5_0007059g0010' => 'nta', 'Nitab4.5_0007184g0010' => 'nta', 'Nitab4.5_0007346g0020' => 'nta', 'Nn1g00410' => 'nnu', 'Nn1g01252' => 'nnu', 'Nn2g11168' => 'nnu', 'Nn2g13403' => 'nnu', 'Nn2g13760' => 'nnu', 'Nn4g26380' => 'nnu', 'Oeu000806.2' => 'oeu', 'Oeu005788.1' => 'oeu', 'Oeu006900.3' => 'oeu', 'Oeu007797.1' => 'oeu', 'Oeu011932.1' => 'oeu', 'Oeu022739.1' => 'oeu', 'Oeu037918.1' => 'oeu', 'Oeu055490.2' => 'oeu', 'Os01g0844400' => 'osa', 'Os02g0819100' => 'osa', 'Os03g0804300' => 'osa', 'Os05g0458000' => 'osa', 'Os07g0467800' => 'osa', 'Os12g0602200' => 'osa', 'Peaxi162Scf00013g03444' => 'pax', 'Peaxi162Scf00094g01120' => 'pax', 'Peaxi162Scf00191g01211' => 'pax', 'Peaxi162Scf00238g01110' => 'pax', 'Peaxi162Scf00330g00719' => 'pax', 'Peaxi162Scf00627g00018' => 'pax', 'PGR031G2686' => 'pgr', 'PGR042G0809' => 'pgr', 'PGR142G0193' => 'pgr', 'PGSC0003DMG400011066' => 'stu', 'PGSC0003DMG400012041' => 'stu', 'PGSC0003DMG400013678' => 'stu', 'PGSC0003DMG400023477' => 'stu', 'PGSC0003DMG400025956' => 'stu', 'PGSC0003DMG401019151' => 'stu', 'Phvul.006G116400' => 'pvu', 'Phvul.007G097300' => 'pvu', 'Phvul.010G015000' => 'pvu', 'Phvul.010G083900' => 'pvu', 'Potri.001G117100' => 'ptr', 'Potri.002G147300' => 'ptr', 'Potri.003G115600' => 'ptr', 'Potri.006G087400' => 'ptr', 'Potri.010G226100' => 'ptr', 'Potri.014G069200' => 'ptr', 'Potri.014G104000' => 'ptr', 'Potri.016G100200' => 'ptr', 'Pp3c10_20450' => 'ppa', 'Pp3c1_42400' => 'ppa', 'Pp3c3_24390' => 'ppa', 'Pp3c3_2860' => 'ppa', 'PRCOL_00003193' => 'pco', 'Prupe.2G144500' => 'ppe', 'Prupe.2G195700' => 'ppe', 'Prupe.2G209800' => 'ppe', 'Prupe.5G080000' => 'ppe', 'Prupe.6G257900' => 'ppe', 'Psat3g001160' => 'psa', 'Psat6g181880' => 'psa', 'Psat7g233720' => 'psa', 'PSO063G7587' => 'pso', 'PSO339G2145' => 'pso', 'PSO339G3369' => 'pso', 'PSO478G2747' => 'pso', 'PSO513G0140' => 'pso', 'PSO782G1614' => 'pso', 'PSO782G4889' => 'pso', 'PSO782G5485' => 'pso', 'PSO801G0241' => 'pso', 'QL07p048854' => 'qlo', 'QL08p046745' => 'qlo', 'QL08p052606' => 'qlo', 'QL08p053414' => 'qlo', 'QL08p054868' => 'qlo', 'RcHm_v2.0_Chr1g0350251' => 'rch', 'RcHm_v2.0_Chr1g0360851' => 'rch', 'RcHm_v2.0_Chr1g0362791' => 'rch', 'RcHm_v2.0_Chr3g0466281' => 'rch', 'RcHm_v2.0_Chr7g0201481' => 'rch', 'Rhsim01G0148600' => 'rsi', 'Rhsim05G0194400' => 'rsi', 'Rhsim07G0000700' => 'rsi', 'Rhsim07G0000800' => 'rsi', 'Rhsim07G0027900' => 'rsi', 'Rhsim09G0149500' => 'rsi', 'RhsimUnG0186900' => 'rsi', 'Sabra01G0089900' => 'sbr', 'Sabra02G0114700' => 'sbr', 'Sabra02G0116300' => 'sbr', 'Sabra03G0080100' => 'sbr', 'Sabra08G0024300' => 'sbr', 'Sabra10G0174300' => 'sbr', 'Sabra14G0048900' => 'sbr', 'Sabra14G0076500' => 'sbr', 'SalBow5G2513' => 'sbo', 'Sc01g0002300' => 'sci', 'Sc01g0004450' => 'sci', 'Sc06g0001680' => 'sci', 'Sc23g0003580' => 'sci', 'Sed0000913' => 'sed', 'Sed0001655' => 'sed', 'Sed0007745' => 'sed', 'Sed0010951' => 'sed', 'Sed0017599' => 'sed', 'Sed0021405' => 'sed', 'Sed0022810' => 'sed', 'SEGI_07099' => 'sgi', 'SEGI_11931' => 'sgi', 'SEGI_13187' => 'sgi', 'SEGI_29958' => 'sgi', 'SEGI_36351' => 'sgi', 'SGA_v2.0_scaffold126G33770' => 'sas', 'SGA_v2.0_scaffold153G37003' => 'sas', 'SGA_v2.0_scaffold2G01359' => 'sas', 'SGA_v2.0_scaffold5G03064' => 'sas', 'SGA_v2.0_scaffold95G28903' => 'sas', 'SHI12701' => 'shi', 'SHI26410' => 'shi', 'SHI38997' => 'shi', 'SHI53759' => 'shi', 'SHI53886' => 'shi', 'SHI54714' => 'shi', 'SMO011G0041' => 'smo', 'SMO146G0251' => 'smo', 'SMO160G0004' => 'smo', 'SMO174G0057' => 'smo', 'SMO244G0089' => 'smo', 'SMO296G0011' => 'smo', 'Solyc01g091280.3' => 'sly', 'Solyc05g047610.3' => 'sly', 'Solyc05g047640.3' => 'sly', 'Solyc05g055630.3' => 'sly', 'Solyc10g018160.2' => 'sly', 'Solyc10g084820.2' => 'sly', 'Solyc10g086565.2' => 'sly', 'Sopen01g037030' => 'spe', 'Sopen05g027920' => 'spe', 'Sopen05g034070' => 'spe', 'Sopen10g007260' => 'spe', 'Sopen10g034260' => 'spe', 'Sopen10g035950' => 'spe', 'Sp3g07710' => 'spa', 'Sp4g27420' => 'spa', 'Sp5g02450' => 'spa', 'Sp6g01280' => 'spa', 'Sp6g38480' => 'spa', 'Sp7g20780' => 'spa', 'TAR374G1413' => 'tar', 'TAR623G1777' => 'tar', 'TAR629G2370' => 'tar', 'TAR633G1759' => 'tar', 'TAR636G3387' => 'tar', 'THA.LOC104802447' => 'tha', 'THA.LOC104813916' => 'tha', 'THA.LOC104816423' => 'tha', 'THA.LOC104817246' => 'tha', 'THA.LOC104825895' => 'tha', 'Thecc.01G335200' => 'tca', 'Thecc.01G377400' => 'tca', 'Thecc.03G262200' => 'tca', 'Thecc.05G036800' => 'tca', 'Thecc.10G080500' => 'tca', 'Thecc.10G080800' => 'tca', 'Thhalv10001560m.g' => 'esa', 'Thhalv10006120m.g' => 'esa', 'Thhalv10014375m.g' => 'esa', 'Thhalv10021264m.g' => 'esa', 'Thhalv10028856m.g' => 'esa', 'TPR.G1914' => 'tpr', 'TPR.G4757' => 'tpr', 'TPR.G5595' => 'tpr', 'TWI14G0952' => 'twi', 'TWI14G1307' => 'twi', 'TWI38G2143' => 'twi', 'TWI59G0826' => 'twi', 'TWI77G0527' => 'twi', 'TWI81G0150' => 'twi', 'unitig_21.g21018' => 'ugi', 'unitig_26.g9725' => 'ugi', 'unitig_744.g24653' => 'ugi', 'unitig_749.g13778' => 'ugi', 'unitig_899.g15035' => 'ugi', 'vmacro04296' => 'vma', 'vmacro04852' => 'vma', 'vmacro13404' => 'vma', 'vmacro20169' => 'vma', 'vmacro21014' => 'vma', 'VMungo0331G0237' => 'vmu', 'VMungo0331G0706' => 'vmu', 'VMungo0331G1361' => 'vmu', 'VMungo0331G1489' => 'vmu', 'VMungo0540G1037' => 'vmu', 'VMungo0720G2487' => 'vmu', 'VMungo0720G2721' => 'vmu', 'Zm00001eb086860' => 'zma', 'Zm00001eb104760' => 'zma', 'Zm00001eb148220' => 'zma', 'Zm00001eb259030' => 'zma', 'Zm00001eb289590' => 'zma', 'Zm00001eb420150' => 'zma' ) $gf_id = 'HOM05D000968' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000968' ) $data_identifier = 'HOM05D000968' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 19, 'bol' => (int) 9, 'bra' => (int) 12, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 5, 'ccan' => (int) 7, 'cde' => (int) 5, 'cfa' => (int) 8, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 4, 'dca' => (int) 5, 'din' => (int) 5, 'dzi' => (int) 12, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 25, 'fve' => (int) 5, 'gma' => (int) 9, 'ghi' => (int) 18, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 7, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 5, 'sun' => (int) 2, 'lal' => (int) 9, 'lja' => (int) 5, 'lonja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 9, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 2, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 3, 'stu' => (int) 6, 'pvu' => (int) 4, 'ptr' => (int) 8, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 3, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 1, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 5, 'sas' => (int) 5, 'shi' => (int) 6, 'smo' => (int) 6, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 3, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420150' $species_info = array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ) $local_species = 'stu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000968', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p31690' => 'bna', 'A03p36040' => 'bna', 'A03p53730' => 'bna', 'A04p01410' => 'bna', 'A05p05420' => 'bna', 'A05p39630' => 'bna', 'A05p39640' => 'bna', 'A09p00970' => 'bna', 'A09p53060' => 'bna', 'A10p31890' => 'bna', 'Aa31LG10G15040' => 'aar', 'Aa31LG1G21090' => 'aar', 'Aa31LG1G26900' => 'aar', 'Aa31LG3G1820' => 'aar', 'Aa31LG5G1100' => 'aar', 'Aa31LG6G4740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2265' => 'aag', 'Actinidia07998' => 'ach', 'Actinidia11266' => 'ach', 'Actinidia12682' => 'ach', 'Actinidia26479' => 'ach', 'Actinidia31406' => 'ach', 'Actinidia32437' => 'ach', 'Actinidia38862' => 'ach', 'Ah.05g174230' => 'amhyb', 'Ah.05g179070' => 'amhyb', 'Ah.05g179090' => 'amhyb', 'Ah.12g059950' => 'amhyb', 'AL3G20480' => 'aly', 'AL4G44520' => 'aly', 'AL5G43110' => 'aly', 'AL6G13890' => 'aly', 'AL6G52620' => 'aly', 'AL7G30830' => 'aly', 'Aqoxy1G00899' => 'aox', 'Aqoxy5G04333' => 'aox', 'Aqoxy7G00641' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3IZ0NN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4EF6AW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W9P8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79GA3M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C43NQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFCU6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G95YVJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCHK29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LU1UG8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX91RN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGB4B1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8DA0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9H7JI' => 'arhy', 'AT3G09320' => 'ath', 'AT3G60800' => 'ath', 'AT4G00840' => 'ath', 'AT4G22750' => 'ath', 'AT5G04270' => 'ath', 'ATR0090G003' => 'atr', 'ATR0559G349' => 'atr', 'ATR0680G261' => 'atr', 'ATR0810G048' => 'atr', 'Atru.chr12.831' => 'acertr', 'Atru.chr5.303' => 'acertr', 'Atru.chr5.748' => 'acertr', 'Atru.chr8.1999' => 'acertr', 'Atru.chr9.1436' => 'acertr', 'AUR62004211' => 'cqu', 'AUR62004548' => 'cqu', 'AUR62013637' => 'cqu', 'AUR62022662' => 'cqu', 'AUR62025777' => 'cqu', 'AUR62042386' => 'cqu', 'BcaB01g02310' => 'bca', 'BcaB01g06062' => 'bca', 'BcaB02g08975' => 'bca', 'BcaB02g08980' => 'bca', 'BcaC01g04228' => 'bca', 'BcaC01g06830' => 'bca', 'BcaC02g10186' => 'bca', 'BcaC02g12214' => 'bca', 'BcaC04g24101' => 'bca', 'BcaC05g29520' => 'bca', 'BcaC05g29661' => 'bca', 'BcaC06g32130' => 'bca', 'BcaC06g32131' => 'bca', 'BcaC07g40601' => 'bca', 'BcaC07g42641' => 'bca', 'BcaNung01038' => 'bca', 'BcaNung01676' => 'bca', 'BcaNung02480' => 'bca', 'BcaNung07376' => 'bca', 'BolC3t16146H' => 'bol', 'BolC3t16637H' => 'bol', 'BolC4t22257H' => 'bol', 'BolC4t24728H' => 'bol', 'BolC5t34517H' => 'bol', 'BolC7t45703H' => 'bol', 'BolC8t51166H' => 'bol', 'BolC9t53038H' => 'bol', 'BolC9t60000H' => 'bol', 'BraA01t01345Z' => 'bra', 'BraA01t01346Z' => 'bra', 'BraA01t01348Z' => 'bra', 'BraA03t12347Z' => 'bra', 'BraA03t12775Z' => 'bra', 'BraA03t14439Z' => 'bra', 'BraA04t15860Z' => 'bra', 'BraA05t19511Z' => 'bra', 'BraA05t22746Z' => 'bra', 'BraA09t35767Z' => 'bra', 'BraA09t40732Z' => 'bra', 'BraA10t45233Z' => 'bra', 'C03p38720' => 'bna', 'C03p43680' => 'bna', 'C04p06350' => 'bna', 'C04p31800' => 'bna', 'C05p58680' => 'bna', 'C07p52110' => 'bna', 'C08p35760' => 'bna', 'C09p01050' => 'bna', 'C09p72600' => 'bna', 'CAN.G106.2' => 'can', 'CAN.G1482.1' => 'can', 'CAN.G324.12' => 'can', 'CAN.G388.20' => 'can', 'CAN.G412.7' => 'can', 'CAN.G694.32' => 'can', 'CAN.G92.12' => 'can', 'CANSAT11G2353' => 'cansat', 'CANSAT21G1398' => 'cansat', 'CANSAT56G2456' => 'cansat', 'CANSAT56G3031' => 'cansat', 'CANSAT56G4539' => 'cansat', 'CARHR083680' => 'chi', 'CARHR171190' => 'chi', 'CARHR209010' => 'chi', 'CARHR229680' => 'chi', 'CARHR249490' => 'chi', 'Carub.0003s0844' => 'cru', 'Carub.0005s2755' => 'cru', 'Carub.0006s0322' => 'cru', 'Carub.0006s3586' => 'cru', 'Carub.0007s1855' => 'cru', 'Ca_07808_v3' => 'car', 'Ca_09535_v3' => 'car', 'Ca_10548_v3' => 'car', 'Ca_19913_v3' => 'car', 'Ca_19916_v3' => 'car', 'Ca_19975_v3' => 'car', 'CBR_g22876' => 'cbr', 'CBR_g22879' => 'cbr', 'CBR_g38491' => 'cbr', 'CBR_g54185' => 'cbr', 'CBR_g54190' => 'cbr', 'Cc02_g11020' => 'ccan', 'Cc02_g23920' => 'ccan', 'Cc02_g39860' => 'ccan', 'Cc02_g39870' => 'ccan', 'Cc03_g06760' => 'ccan', 'Cc06_g02450' => 'ccan', 'Cc09_g09450' => 'ccan', 'CDE02G1959' => 'cde', 'CDE04G0600' => 'cde', 'CDE07G1996' => 'cde', 'CDE07G2078' => 'cde', 'CDE11G0611' => 'cde', 'Cfa001683' => 'cfa', 'Cfa001734' => 'cfa', 'Cfa001737' => 'cfa', 'Cfa003751' => 'cfa', 'Cfa012019' => 'cfa', 'Cfa017353' => 'cfa', 'Cfa017732' => 'cfa', 'Cfa022464' => 'cfa', 'Ciclev10012400m.g' => 'ccl', 'Ciclev10021242m.g' => 'ccl', 'Ciclev10021302m.g' => 'ccl', 'Ciclev10021463m.g' => 'ccl', 'Ciclev10032359m.g' => 'ccl', 'CiPaw.01G081000' => 'cil', 'CiPaw.01G262500' => 'cil', 'CiPaw.01G269800' => 'cil', 'CiPaw.02G168400' => 'cil', 'CiPaw.05G119500' => 'cil', 'CiPaw.11G147300' => 'cil', 'ClCG01G003630' => 'cla', 'ClCG05G000510' => 'cla', 'ClCG05G002300' => 'cla', 'ClCG08G007650' => 'cla', 'ClCG10G021250' => 'cla', 'COL.COLO4_06218' => 'col', 'COL.COLO4_12538' => 'col', 'COL.COLO4_14775' => 'col', 'COL.COLO4_23875' => 'col', 'Cpa.g.sc141.16' => 'cpa', 'Cpa.g.sc169.16' => 'cpa', 'Cpa.g.sc244.4' => 'cpa', 'Cpa.g.sc244.5' => 'cpa', 'Cpa.g.sc29.87' => 'cpa', 'Cpa.g.sc53.115' => 'cpa', 'Cre03.g207502' => 'cre', 'Cre06.g277000' => 'cre', 'Cre09.g394050' => 'cre', 'CsaV3_3G007680' => 'csa', 'CsaV3_3G009710' => 'csa', 'CsaV3_3G034790' => 'csa', 'CsaV3_5G003750' => 'csa', 'CsaV3_6G036620' => 'csa', 'CSS0002288' => 'camsi', 'CSS0011250' => 'camsi', 'CSS0021619' => 'camsi', 'CSS0046701' => 'camsi', 'DCAR_006420' => 'dca', 'DCAR_006865' => 'dca', 'DCAR_008558' => 'dca', 'DCAR_028754' => 'dca', 'DCAR_028755' => 'dca', 'Dinv31218' => 'din', 'Dinv32371' => 'din', 'Dinv34250' => 'din', 'Dinv37156' => 'din', 'Dinv43704' => 'din', 'Duzib093G1811' => 'dzi', 'Duzib106G1622' => 'dzi', 'Duzib114G0504' => 'dzi', 'Duzib128G0338' => 'dzi', 'Duzib128G1577' => 'dzi', 'Duzib133G0104' => 'dzi', 'Duzib133G1080' => 'dzi', 'Duzib138G0324' => 'dzi', 'Duzib138G0394' => 'dzi', 'Duzib205G0122' => 'dzi', 'Duzib268G1020' => 'dzi', 'Duzib268G1359' => 'dzi', 'ECA232G3929' => 'eca', 'ECA236G2210' => 'eca', 'ECA236G2287' => 'eca', 'ECA240G4568' => 'eca', 'ECA247G0894' => 'eca', 'EL10Ac1g00200' => 'bvu', 'EL10Ac1g00886' => 'bvu', 'EL10As1g23091' => 'bvu', 'EL10As1g23092' => 'bvu', 'Eucgr.A01284' => 'egr', 'Eucgr.A01285' => 'egr', 'Eucgr.D02456' => 'egr', 'Eucgr.E00018' => 'egr', 'Eucgr.E01439' => 'egr', 'Eucgr.G02859' => 'egr', 'FAN01G0168' => 'fan', 'FAN01G0453' => 'fan', 'FAN01G2761' => 'fan', 'FAN02G1239' => 'fan', 'FAN03G0645' => 'fan', 'FAN03G2707' => 'fan', 'FAN03G2978' => 'fan', 'FAN04G0227' => 'fan', 'FAN06G0091' => 'fan', 'FAN06G1418' => 'fan', 'FAN06G1512' => 'fan', 'FAN06G1986' => 'fan', 'FAN06G2905' => 'fan', 'FAN06G4325' => 'fan', 'FAN08G0033' => 'fan', 'FAN09G0642' => 'fan', 'FAN10G1763' => 'fan', 'FAN10G2026' => 'fan', 'FAN10G2513' => 'fan', 'FAN10G3402' => 'fan', 'FAN10G3564' => 'fan', 'FAN10G3987' => 'fan', 'FAN13G1490' => 'fan', 'FAN14G5857' => 'fan', 'FAN18G1188' => 'fan', 'FvH4_5g00750' => 'fve', 'FvH4_6g13410' => 'fve', 'FvH4_7g11740' => 'fve', 'FvH4_7g17410' => 'fve', 'FvH4_7g18860' => 'fve', 'Glyma.01G099100' => 'gma', 'Glyma.01G142300' => 'gma', 'Glyma.03G025500' => 'gma', 'Glyma.03G069700' => 'gma', 'Glyma.03G260000' => 'gma', 'Glyma.09G269800' => 'gma', 'Glyma.10G208700' => 'gma', 'Glyma.18G220400' => 'gma', 'Glyma.20G182000' => 'gma', 'Gohir.A01G221726' => 'ghi', 'Gohir.A07G134600' => 'ghi', 'Gohir.A07G146000' => 'ghi', 'Gohir.A08G173900' => 'ghi', 'Gohir.A09G194900' => 'ghi', 'Gohir.A10G204100' => 'ghi', 'Gohir.A11G080600' => 'ghi', 'Gohir.A11G327500' => 'ghi', 'Gohir.A12G101800' => 'ghi', 'Gohir.D01G211200' => 'ghi', 'Gohir.D07G139200' => 'ghi', 'Gohir.D07G152100' => 'ghi', 'Gohir.D08G192600' => 'ghi', 'Gohir.D09G189200' => 'ghi', 'Gohir.D10G212000' => 'ghi', 'Gohir.D11G085200' => 'ghi', 'Gohir.D11G346400' => 'ghi', 'Gohir.D12G104800' => 'ghi', 'Gorai.001G151300' => 'gra', 'Gorai.001G174100' => 'gra', 'Gorai.002G257000' => 'gra', 'Gorai.004G202600' => 'gra', 'Gorai.007G090900' => 'gra', 'Gorai.007G376700' => 'gra', 'Gorai.008G114100' => 'gra', 'Gorai.011G237900' => 'gra', 'GSVIVG01005450001' => 'vvi', 'GSVIVG01016232001' => 'vvi', 'GSVIVG01026157001' => 'vvi', 'GSVIVG01027419001' => 'vvi', 'GSVIVG01027631001' => 'vvi', 'GSVIVG01034143001' => 'vvi', 'HanXRQChr03g0093921' => 'han', 'HanXRQChr04g0120001' => 'han', 'HanXRQChr04g0122561' => 'han', 'HanXRQChr09g0246851' => 'han', 'HanXRQChr10g0293311' => 'han', 'HanXRQChr13g0425231' => 'han', 'HanXRQChr16g0532571' => 'han', 'Haze_09050' => 'cav', 'Haze_15715' => 'cav', 'Haze_15716' => 'cav', 'Haze_16803' => 'cav', 'Haze_16850' => 'cav', 'Hma1.2p1_0301F.1_g118655' => 'hma', 'Hma1.2p1_0309F.1_g120590' => 'hma', 'Hma1.2p1_0936F.1_g238900' => 'hma', 'Hma1.2p1_3552F.1_g336740' => 'hma', 'HPP92_003520' => 'vpl', 'HPP92_006628' => 'vpl', 'HPP92_006645' => 'vpl', 'HPP92_014669' => 'vpl', 'HPP92_015077' => 'vpl', 'Hund16742' => 'sun', 'Hund17022' => 'sun', 'Lalb_Chr02g0152131' => 'lal', 'Lalb_Chr05g0225371' => 'lal', 'Lalb_Chr07g0189841' => 'lal', 'Lalb_Chr07g0192961' => 'lal', 'Lalb_Chr12g0208221' => 'lal', 'Lalb_Chr13g0291211' => 'lal', 'Lalb_Chr13g0291781' => 'lal', 'Lalb_Chr18g0044651' => 'lal', 'Lalb_Chr21g0313731' => 'lal', 'Lj1g0022533' => 'lja', 'Lj2A18T50' => 'lonja', 'Lj2A92G93' => 'lonja', 'Lj3A965T73' => 'lonja', 'Lj3g0000673' => 'lja', 'Lj3g0002666' => 'lja', 'Lj4g0016985' => 'lja', 'Lj5g0003625' => 'lja', 'Lj7A529G36' => 'lonja', 'Lj9A569T49' => 'lonja', 'Lj9A604T63' => 'lonja', 'Lsat_1_v5_gn_3_132060' => 'lsa', 'Lsat_1_v5_gn_4_68941' => 'lsa', 'Lsat_1_v5_gn_5_95580' => 'lsa', 'Lsat_1_v5_gn_7_161' => 'lsa', 'Lsat_1_v5_gn_7_7041' => 'lsa', 'Lsat_1_v5_gn_9_33481' => 'lsa', 'Lsat_1_v5_gn_9_68260' => 'lsa', 'Manes.01G073100' => 'mes', 'Manes.01G266300' => 'mes', 'Manes.02G033300' => 'mes', 'Manes.05G017900' => 'mes', 'Manes.05G046100' => 'mes', 'Manes.08G080900' => 'mes', 'Manes.10G049400' => 'mes', 'Mapoly0009s0186' => 'mpo', 'Mapoly0036s0118' => 'mpo', 'Mapoly0101s0046' => 'mpo', 'MBI04_g30218_MAGBIO' => 'mbi', 'MBI04_g35564_MAGBIO' => 'mbi', 'MBI12_g34011_MAGBIO' => 'mbi', 'MBI14_g04655_MAGBIO' => 'mbi', 'MCO07G653' => 'mco', 'MCO10G173' => 'mco', 'MD01G1087100' => 'mdo', 'MD01G1104200' => 'mdo', 'MD02G1205100' => 'mdo', 'MD04G1079200' => 'mdo', 'MD04G1131400' => 'mdo', 'MD07G1121600' => 'mdo', 'MD07G1157300' => 'mdo', 'MD07G1171000' => 'mdo', 'MD12G1144500' => 'mdo', 'Medtr1g094610' => 'mtr', 'Medtr4g021795' => 'mtr', 'Medtr4g023760' => 'mtr', 'Medtr7g118050' => 'mtr', 'MELO3C005582.2' => 'cme', 'MELO3C005989.2' => 'cme', 'MELO3C006192.2' => 'cme', 'MELO3C009248.2' => 'cme', 'MELO3C019817.2' => 'cme', 'Migut.B01625' => 'egut', 'Migut.B01915' => 'egut', 'Migut.F01721' => 'egut', 'Migut.J00314' => 'egut', 'MSTRG.20742' => 'ama', 'MSTRG.8134' => 'ama', 'Nitab4.5_0000096g0010' => 'nta', 'Nitab4.5_0000202g0030' => 'nta', 'Nitab4.5_0000216g0370' => 'nta', 'Nitab4.5_0000457g0230' => 'nta', 'Nitab4.5_0001702g0170' => 'nta', 'Nitab4.5_0003607g0010' => 'nta', 'Nitab4.5_0004917g0020' => 'nta', 'Nitab4.5_0007059g0010' => 'nta', 'Nitab4.5_0007184g0010' => 'nta', 'Nitab4.5_0007346g0020' => 'nta', 'Nn1g00410' => 'nnu', 'Nn1g01252' => 'nnu', 'Nn2g11168' => 'nnu', 'Nn2g13403' => 'nnu', 'Nn2g13760' => 'nnu', 'Nn4g26380' => 'nnu', 'Oeu000806.2' => 'oeu', 'Oeu005788.1' => 'oeu', 'Oeu006900.3' => 'oeu', 'Oeu007797.1' => 'oeu', 'Oeu011932.1' => 'oeu', 'Oeu022739.1' => 'oeu', 'Oeu037918.1' => 'oeu', 'Oeu055490.2' => 'oeu', 'Os01g0844400' => 'osa', 'Os02g0819100' => 'osa', 'Os03g0804300' => 'osa', 'Os05g0458000' => 'osa', 'Os07g0467800' => 'osa', 'Os12g0602200' => 'osa', 'Peaxi162Scf00013g03444' => 'pax', 'Peaxi162Scf00094g01120' => 'pax', 'Peaxi162Scf00191g01211' => 'pax', 'Peaxi162Scf00238g01110' => 'pax', 'Peaxi162Scf00330g00719' => 'pax', 'Peaxi162Scf00627g00018' => 'pax', 'PGR031G2686' => 'pgr', 'PGR042G0809' => 'pgr', 'PGR142G0193' => 'pgr', 'PGSC0003DMG400011066' => 'stu', 'PGSC0003DMG400012041' => 'stu', 'PGSC0003DMG400013678' => 'stu', 'PGSC0003DMG400023477' => 'stu', 'PGSC0003DMG400025956' => 'stu', 'PGSC0003DMG401019151' => 'stu', 'Phvul.006G116400' => 'pvu', 'Phvul.007G097300' => 'pvu', 'Phvul.010G015000' => 'pvu', 'Phvul.010G083900' => 'pvu', 'Potri.001G117100' => 'ptr', 'Potri.002G147300' => 'ptr', 'Potri.003G115600' => 'ptr', 'Potri.006G087400' => 'ptr', 'Potri.010G226100' => 'ptr', 'Potri.014G069200' => 'ptr', 'Potri.014G104000' => 'ptr', 'Potri.016G100200' => 'ptr', 'Pp3c10_20450' => 'ppa', 'Pp3c1_42400' => 'ppa', 'Pp3c3_24390' => 'ppa', 'Pp3c3_2860' => 'ppa', 'PRCOL_00003193' => 'pco', 'Prupe.2G144500' => 'ppe', 'Prupe.2G195700' => 'ppe', 'Prupe.2G209800' => 'ppe', 'Prupe.5G080000' => 'ppe', 'Prupe.6G257900' => 'ppe', 'Psat3g001160' => 'psa', 'Psat6g181880' => 'psa', 'Psat7g233720' => 'psa', 'PSO063G7587' => 'pso', 'PSO339G2145' => 'pso', 'PSO339G3369' => 'pso', 'PSO478G2747' => 'pso', 'PSO513G0140' => 'pso', 'PSO782G1614' => 'pso', 'PSO782G4889' => 'pso', 'PSO782G5485' => 'pso', 'PSO801G0241' => 'pso', 'QL07p048854' => 'qlo', 'QL08p046745' => 'qlo', 'QL08p052606' => 'qlo', 'QL08p053414' => 'qlo', 'QL08p054868' => 'qlo', 'RcHm_v2.0_Chr1g0350251' => 'rch', 'RcHm_v2.0_Chr1g0360851' => 'rch', 'RcHm_v2.0_Chr1g0362791' => 'rch', 'RcHm_v2.0_Chr3g0466281' => 'rch', 'RcHm_v2.0_Chr7g0201481' => 'rch', 'Rhsim01G0148600' => 'rsi', 'Rhsim05G0194400' => 'rsi', 'Rhsim07G0000700' => 'rsi', 'Rhsim07G0000800' => 'rsi', 'Rhsim07G0027900' => 'rsi', 'Rhsim09G0149500' => 'rsi', 'RhsimUnG0186900' => 'rsi', 'Sabra01G0089900' => 'sbr', 'Sabra02G0114700' => 'sbr', 'Sabra02G0116300' => 'sbr', 'Sabra03G0080100' => 'sbr', 'Sabra08G0024300' => 'sbr', 'Sabra10G0174300' => 'sbr', 'Sabra14G0048900' => 'sbr', 'Sabra14G0076500' => 'sbr', 'SalBow5G2513' => 'sbo', 'Sc01g0002300' => 'sci', 'Sc01g0004450' => 'sci', 'Sc06g0001680' => 'sci', 'Sc23g0003580' => 'sci', 'Sed0000913' => 'sed', 'Sed0001655' => 'sed', 'Sed0007745' => 'sed', 'Sed0010951' => 'sed', 'Sed0017599' => 'sed', 'Sed0021405' => 'sed', 'Sed0022810' => 'sed', 'SEGI_07099' => 'sgi', 'SEGI_11931' => 'sgi', 'SEGI_13187' => 'sgi', 'SEGI_29958' => 'sgi', 'SEGI_36351' => 'sgi', 'SGA_v2.0_scaffold126G33770' => 'sas', 'SGA_v2.0_scaffold153G37003' => 'sas', 'SGA_v2.0_scaffold2G01359' => 'sas', 'SGA_v2.0_scaffold5G03064' => 'sas', 'SGA_v2.0_scaffold95G28903' => 'sas', 'SHI12701' => 'shi', 'SHI26410' => 'shi', 'SHI38997' => 'shi', 'SHI53759' => 'shi', 'SHI53886' => 'shi', 'SHI54714' => 'shi', 'SMO011G0041' => 'smo', 'SMO146G0251' => 'smo', 'SMO160G0004' => 'smo', 'SMO174G0057' => 'smo', 'SMO244G0089' => 'smo', 'SMO296G0011' => 'smo', 'Solyc01g091280.3' => 'sly', 'Solyc05g047610.3' => 'sly', 'Solyc05g047640.3' => 'sly', 'Solyc05g055630.3' => 'sly', 'Solyc10g018160.2' => 'sly', 'Solyc10g084820.2' => 'sly', 'Solyc10g086565.2' => 'sly', 'Sopen01g037030' => 'spe', 'Sopen05g027920' => 'spe', 'Sopen05g034070' => 'spe', 'Sopen10g007260' => 'spe', 'Sopen10g034260' => 'spe', 'Sopen10g035950' => 'spe', 'Sp3g07710' => 'spa', 'Sp4g27420' => 'spa', 'Sp5g02450' => 'spa', 'Sp6g01280' => 'spa', 'Sp6g38480' => 'spa', 'Sp7g20780' => 'spa', 'TAR374G1413' => 'tar', 'TAR623G1777' => 'tar', 'TAR629G2370' => 'tar', 'TAR633G1759' => 'tar', 'TAR636G3387' => 'tar', 'THA.LOC104802447' => 'tha', 'THA.LOC104813916' => 'tha', 'THA.LOC104816423' => 'tha', 'THA.LOC104817246' => 'tha', 'THA.LOC104825895' => 'tha', 'Thecc.01G335200' => 'tca', 'Thecc.01G377400' => 'tca', 'Thecc.03G262200' => 'tca', 'Thecc.05G036800' => 'tca', 'Thecc.10G080500' => 'tca', 'Thecc.10G080800' => 'tca', 'Thhalv10001560m.g' => 'esa', 'Thhalv10006120m.g' => 'esa', 'Thhalv10014375m.g' => 'esa', 'Thhalv10021264m.g' => 'esa', 'Thhalv10028856m.g' => 'esa', 'TPR.G1914' => 'tpr', 'TPR.G4757' => 'tpr', 'TPR.G5595' => 'tpr', 'TWI14G0952' => 'twi', 'TWI14G1307' => 'twi', 'TWI38G2143' => 'twi', 'TWI59G0826' => 'twi', 'TWI77G0527' => 'twi', 'TWI81G0150' => 'twi', 'unitig_21.g21018' => 'ugi', 'unitig_26.g9725' => 'ugi', 'unitig_744.g24653' => 'ugi', 'unitig_749.g13778' => 'ugi', 'unitig_899.g15035' => 'ugi', 'vmacro04296' => 'vma', 'vmacro04852' => 'vma', 'vmacro13404' => 'vma', 'vmacro20169' => 'vma', 'vmacro21014' => 'vma', 'VMungo0331G0237' => 'vmu', 'VMungo0331G0706' => 'vmu', 'VMungo0331G1361' => 'vmu', 'VMungo0331G1489' => 'vmu', 'VMungo0540G1037' => 'vmu', 'VMungo0720G2487' => 'vmu', 'VMungo0720G2721' => 'vmu', 'Zm00001eb086860' => 'zma', 'Zm00001eb104760' => 'zma', 'Zm00001eb148220' => 'zma', 'Zm00001eb259030' => 'zma', 'Zm00001eb289590' => 'zma', 'Zm00001eb420150' => 'zma' ), 'gf_id' => 'HOM05D000968', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000968' ), 'data_identifier' => 'HOM05D000968', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000968', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p31690' => 'bna', 'A03p36040' => 'bna', 'A03p53730' => 'bna', 'A04p01410' => 'bna', 'A05p05420' => 'bna', 'A05p39630' => 'bna', 'A05p39640' => 'bna', 'A09p00970' => 'bna', 'A09p53060' => 'bna', 'A10p31890' => 'bna', 'Aa31LG10G15040' => 'aar', 'Aa31LG1G21090' => 'aar', 'Aa31LG1G26900' => 'aar', 'Aa31LG3G1820' => 'aar', 'Aa31LG5G1100' => 'aar', 'Aa31LG6G4740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2265' => 'aag', 'Actinidia07998' => 'ach', 'Actinidia11266' => 'ach', 'Actinidia12682' => 'ach', 'Actinidia26479' => 'ach', 'Actinidia31406' => 'ach', 'Actinidia32437' => 'ach', 'Actinidia38862' => 'ach', 'Ah.05g174230' => 'amhyb', 'Ah.05g179070' => 'amhyb', 'Ah.05g179090' => 'amhyb', 'Ah.12g059950' => 'amhyb', 'AL3G20480' => 'aly', 'AL4G44520' => 'aly', 'AL5G43110' => 'aly', 'AL6G13890' => 'aly', 'AL6G52620' => 'aly', 'AL7G30830' => 'aly', 'Aqoxy1G00899' => 'aox', 'Aqoxy5G04333' => 'aox', 'Aqoxy7G00641' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3IZ0NN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4EF6AW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W9P8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79GA3M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C43NQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFCU6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G95YVJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCHK29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LU1UG8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX91RN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGB4B1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8DA0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9H7JI' => 'arhy', 'AT3G09320' => 'ath', 'AT3G60800' => 'ath', 'AT4G00840' => 'ath', 'AT4G22750' => 'ath', 'AT5G04270' => 'ath', 'ATR0090G003' => 'atr', 'ATR0559G349' => 'atr', 'ATR0680G261' => 'atr', 'ATR0810G048' => 'atr', 'Atru.chr12.831' => 'acertr', 'Atru.chr5.303' => 'acertr', 'Atru.chr5.748' => 'acertr', 'Atru.chr8.1999' => 'acertr', 'Atru.chr9.1436' => 'acertr', 'AUR62004211' => 'cqu', 'AUR62004548' => 'cqu', 'AUR62013637' => 'cqu', 'AUR62022662' => 'cqu', 'AUR62025777' => 'cqu', 'AUR62042386' => 'cqu', 'BcaB01g02310' => 'bca', 'BcaB01g06062' => 'bca', 'BcaB02g08975' => 'bca', 'BcaB02g08980' => 'bca', 'BcaC01g04228' => 'bca', 'BcaC01g06830' => 'bca', 'BcaC02g10186' => 'bca', 'BcaC02g12214' => 'bca', 'BcaC04g24101' => 'bca', 'BcaC05g29520' => 'bca', 'BcaC05g29661' => 'bca', 'BcaC06g32130' => 'bca', 'BcaC06g32131' => 'bca', 'BcaC07g40601' => 'bca', 'BcaC07g42641' => 'bca', 'BcaNung01038' => 'bca', 'BcaNung01676' => 'bca', 'BcaNung02480' => 'bca', 'BcaNung07376' => 'bca', 'BolC3t16146H' => 'bol', 'BolC3t16637H' => 'bol', 'BolC4t22257H' => 'bol', 'BolC4t24728H' => 'bol', 'BolC5t34517H' => 'bol', 'BolC7t45703H' => 'bol', 'BolC8t51166H' => 'bol', 'BolC9t53038H' => 'bol', 'BolC9t60000H' => 'bol', 'BraA01t01345Z' => 'bra', 'BraA01t01346Z' => 'bra', 'BraA01t01348Z' => 'bra', 'BraA03t12347Z' => 'bra', 'BraA03t12775Z' => 'bra', 'BraA03t14439Z' => 'bra', 'BraA04t15860Z' => 'bra', 'BraA05t19511Z' => 'bra', 'BraA05t22746Z' => 'bra', 'BraA09t35767Z' => 'bra', 'BraA09t40732Z' => 'bra', 'BraA10t45233Z' => 'bra', 'C03p38720' => 'bna', 'C03p43680' => 'bna', 'C04p06350' => 'bna', 'C04p31800' => 'bna', 'C05p58680' => 'bna', 'C07p52110' => 'bna', 'C08p35760' => 'bna', 'C09p01050' => 'bna', 'C09p72600' => 'bna', 'CAN.G106.2' => 'can', 'CAN.G1482.1' => 'can', 'CAN.G324.12' => 'can', 'CAN.G388.20' => 'can', 'CAN.G412.7' => 'can', 'CAN.G694.32' => 'can', 'CAN.G92.12' => 'can', 'CANSAT11G2353' => 'cansat', 'CANSAT21G1398' => 'cansat', 'CANSAT56G2456' => 'cansat', 'CANSAT56G3031' => 'cansat', 'CANSAT56G4539' => 'cansat', 'CARHR083680' => 'chi', 'CARHR171190' => 'chi', 'CARHR209010' => 'chi', 'CARHR229680' => 'chi', 'CARHR249490' => 'chi', 'Carub.0003s0844' => 'cru', 'Carub.0005s2755' => 'cru', 'Carub.0006s0322' => 'cru', 'Carub.0006s3586' => 'cru', 'Carub.0007s1855' => 'cru', 'Ca_07808_v3' => 'car', 'Ca_09535_v3' => 'car', 'Ca_10548_v3' => 'car', 'Ca_19913_v3' => 'car', 'Ca_19916_v3' => 'car', 'Ca_19975_v3' => 'car', 'CBR_g22876' => 'cbr', 'CBR_g22879' => 'cbr', 'CBR_g38491' => 'cbr', 'CBR_g54185' => 'cbr', 'CBR_g54190' => 'cbr', 'Cc02_g11020' => 'ccan', 'Cc02_g23920' => 'ccan', 'Cc02_g39860' => 'ccan', 'Cc02_g39870' => 'ccan', 'Cc03_g06760' => 'ccan', 'Cc06_g02450' => 'ccan', 'Cc09_g09450' => 'ccan', 'CDE02G1959' => 'cde', 'CDE04G0600' => 'cde', 'CDE07G1996' => 'cde', 'CDE07G2078' => 'cde', 'CDE11G0611' => 'cde', 'Cfa001683' => 'cfa', 'Cfa001734' => 'cfa', 'Cfa001737' => 'cfa', 'Cfa003751' => 'cfa', 'Cfa012019' => 'cfa', 'Cfa017353' => 'cfa', 'Cfa017732' => 'cfa', 'Cfa022464' => 'cfa', 'Ciclev10012400m.g' => 'ccl', 'Ciclev10021242m.g' => 'ccl', 'Ciclev10021302m.g' => 'ccl', 'Ciclev10021463m.g' => 'ccl', 'Ciclev10032359m.g' => 'ccl', 'CiPaw.01G081000' => 'cil', 'CiPaw.01G262500' => 'cil', 'CiPaw.01G269800' => 'cil', 'CiPaw.02G168400' => 'cil', 'CiPaw.05G119500' => 'cil', 'CiPaw.11G147300' => 'cil', 'ClCG01G003630' => 'cla', 'ClCG05G000510' => 'cla', 'ClCG05G002300' => 'cla', 'ClCG08G007650' => 'cla', 'ClCG10G021250' => 'cla', 'COL.COLO4_06218' => 'col', 'COL.COLO4_12538' => 'col', 'COL.COLO4_14775' => 'col', 'COL.COLO4_23875' => 'col', 'Cpa.g.sc141.16' => 'cpa', 'Cpa.g.sc169.16' => 'cpa', 'Cpa.g.sc244.4' => 'cpa', 'Cpa.g.sc244.5' => 'cpa', 'Cpa.g.sc29.87' => 'cpa', 'Cpa.g.sc53.115' => 'cpa', 'Cre03.g207502' => 'cre', 'Cre06.g277000' => 'cre', 'Cre09.g394050' => 'cre', 'CsaV3_3G007680' => 'csa', 'CsaV3_3G009710' => 'csa', 'CsaV3_3G034790' => 'csa', 'CsaV3_5G003750' => 'csa', 'CsaV3_6G036620' => 'csa', 'CSS0002288' => 'camsi', 'CSS0011250' => 'camsi', 'CSS0021619' => 'camsi', 'CSS0046701' => 'camsi', 'DCAR_006420' => 'dca', 'DCAR_006865' => 'dca', 'DCAR_008558' => 'dca', 'DCAR_028754' => 'dca', 'DCAR_028755' => 'dca', 'Dinv31218' => 'din', 'Dinv32371' => 'din', 'Dinv34250' => 'din', 'Dinv37156' => 'din', 'Dinv43704' => 'din', 'Duzib093G1811' => 'dzi', 'Duzib106G1622' => 'dzi', 'Duzib114G0504' => 'dzi', 'Duzib128G0338' => 'dzi', 'Duzib128G1577' => 'dzi', 'Duzib133G0104' => 'dzi', 'Duzib133G1080' => 'dzi', 'Duzib138G0324' => 'dzi', 'Duzib138G0394' => 'dzi', 'Duzib205G0122' => 'dzi', 'Duzib268G1020' => 'dzi', 'Duzib268G1359' => 'dzi', 'ECA232G3929' => 'eca', 'ECA236G2210' => 'eca', 'ECA236G2287' => 'eca', 'ECA240G4568' => 'eca', 'ECA247G0894' => 'eca', 'EL10Ac1g00200' => 'bvu', 'EL10Ac1g00886' => 'bvu', 'EL10As1g23091' => 'bvu', 'EL10As1g23092' => 'bvu', 'Eucgr.A01284' => 'egr', 'Eucgr.A01285' => 'egr', 'Eucgr.D02456' => 'egr', 'Eucgr.E00018' => 'egr', 'Eucgr.E01439' => 'egr', 'Eucgr.G02859' => 'egr', 'FAN01G0168' => 'fan', 'FAN01G0453' => 'fan', 'FAN01G2761' => 'fan', 'FAN02G1239' => 'fan', 'FAN03G0645' => 'fan', 'FAN03G2707' => 'fan', 'FAN03G2978' => 'fan', 'FAN04G0227' => 'fan', 'FAN06G0091' => 'fan', 'FAN06G1418' => 'fan', 'FAN06G1512' => 'fan', 'FAN06G1986' => 'fan', 'FAN06G2905' => 'fan', 'FAN06G4325' => 'fan', 'FAN08G0033' => 'fan', 'FAN09G0642' => 'fan', 'FAN10G1763' => 'fan', 'FAN10G2026' => 'fan', 'FAN10G2513' => 'fan', 'FAN10G3402' => 'fan', 'FAN10G3564' => 'fan', 'FAN10G3987' => 'fan', 'FAN13G1490' => 'fan', 'FAN14G5857' => 'fan', 'FAN18G1188' => 'fan', 'FvH4_5g00750' => 'fve', 'FvH4_6g13410' => 'fve', 'FvH4_7g11740' => 'fve', 'FvH4_7g17410' => 'fve', 'FvH4_7g18860' => 'fve', 'Glyma.01G099100' => 'gma', 'Glyma.01G142300' => 'gma', 'Glyma.03G025500' => 'gma', 'Glyma.03G069700' => 'gma', 'Glyma.03G260000' => 'gma', 'Glyma.09G269800' => 'gma', 'Glyma.10G208700' => 'gma', 'Glyma.18G220400' => 'gma', 'Glyma.20G182000' => 'gma', 'Gohir.A01G221726' => 'ghi', 'Gohir.A07G134600' => 'ghi', 'Gohir.A07G146000' => 'ghi', 'Gohir.A08G173900' => 'ghi', 'Gohir.A09G194900' => 'ghi', 'Gohir.A10G204100' => 'ghi', 'Gohir.A11G080600' => 'ghi', 'Gohir.A11G327500' => 'ghi', 'Gohir.A12G101800' => 'ghi', 'Gohir.D01G211200' => 'ghi', 'Gohir.D07G139200' => 'ghi', 'Gohir.D07G152100' => 'ghi', 'Gohir.D08G192600' => 'ghi', 'Gohir.D09G189200' => 'ghi', 'Gohir.D10G212000' => 'ghi', 'Gohir.D11G085200' => 'ghi', 'Gohir.D11G346400' => 'ghi', 'Gohir.D12G104800' => 'ghi', 'Gorai.001G151300' => 'gra', 'Gorai.001G174100' => 'gra', 'Gorai.002G257000' => 'gra', 'Gorai.004G202600' => 'gra', 'Gorai.007G090900' => 'gra', 'Gorai.007G376700' => 'gra', 'Gorai.008G114100' => 'gra', 'Gorai.011G237900' => 'gra', 'GSVIVG01005450001' => 'vvi', 'GSVIVG01016232001' => 'vvi', 'GSVIVG01026157001' => 'vvi', 'GSVIVG01027419001' => 'vvi', 'GSVIVG01027631001' => 'vvi', 'GSVIVG01034143001' => 'vvi', 'HanXRQChr03g0093921' => 'han', 'HanXRQChr04g0120001' => 'han', 'HanXRQChr04g0122561' => 'han', 'HanXRQChr09g0246851' => 'han', 'HanXRQChr10g0293311' => 'han', 'HanXRQChr13g0425231' => 'han', 'HanXRQChr16g0532571' => 'han', 'Haze_09050' => 'cav', 'Haze_15715' => 'cav', 'Haze_15716' => 'cav', 'Haze_16803' => 'cav', 'Haze_16850' => 'cav', 'Hma1.2p1_0301F.1_g118655' => 'hma', 'Hma1.2p1_0309F.1_g120590' => 'hma', 'Hma1.2p1_0936F.1_g238900' => 'hma', 'Hma1.2p1_3552F.1_g336740' => 'hma', 'HPP92_003520' => 'vpl', 'HPP92_006628' => 'vpl', 'HPP92_006645' => 'vpl', 'HPP92_014669' => 'vpl', 'HPP92_015077' => 'vpl', 'Hund16742' => 'sun', 'Hund17022' => 'sun', 'Lalb_Chr02g0152131' => 'lal', 'Lalb_Chr05g0225371' => 'lal', 'Lalb_Chr07g0189841' => 'lal', 'Lalb_Chr07g0192961' => 'lal', 'Lalb_Chr12g0208221' => 'lal', 'Lalb_Chr13g0291211' => 'lal', 'Lalb_Chr13g0291781' => 'lal', 'Lalb_Chr18g0044651' => 'lal', 'Lalb_Chr21g0313731' => 'lal', 'Lj1g0022533' => 'lja', 'Lj2A18T50' => 'lonja', 'Lj2A92G93' => 'lonja', 'Lj3A965T73' => 'lonja', 'Lj3g0000673' => 'lja', 'Lj3g0002666' => 'lja', 'Lj4g0016985' => 'lja', 'Lj5g0003625' => 'lja', 'Lj7A529G36' => 'lonja', 'Lj9A569T49' => 'lonja', 'Lj9A604T63' => 'lonja', 'Lsat_1_v5_gn_3_132060' => 'lsa', 'Lsat_1_v5_gn_4_68941' => 'lsa', 'Lsat_1_v5_gn_5_95580' => 'lsa', 'Lsat_1_v5_gn_7_161' => 'lsa', 'Lsat_1_v5_gn_7_7041' => 'lsa', 'Lsat_1_v5_gn_9_33481' => 'lsa', 'Lsat_1_v5_gn_9_68260' => 'lsa', 'Manes.01G073100' => 'mes', 'Manes.01G266300' => 'mes', 'Manes.02G033300' => 'mes', 'Manes.05G017900' => 'mes', 'Manes.05G046100' => 'mes', 'Manes.08G080900' => 'mes', 'Manes.10G049400' => 'mes', 'Mapoly0009s0186' => 'mpo', 'Mapoly0036s0118' => 'mpo', 'Mapoly0101s0046' => 'mpo', 'MBI04_g30218_MAGBIO' => 'mbi', 'MBI04_g35564_MAGBIO' => 'mbi', 'MBI12_g34011_MAGBIO' => 'mbi', 'MBI14_g04655_MAGBIO' => 'mbi', 'MCO07G653' => 'mco', 'MCO10G173' => 'mco', 'MD01G1087100' => 'mdo', 'MD01G1104200' => 'mdo', 'MD02G1205100' => 'mdo', 'MD04G1079200' => 'mdo', 'MD04G1131400' => 'mdo', 'MD07G1121600' => 'mdo', 'MD07G1157300' => 'mdo', 'MD07G1171000' => 'mdo', 'MD12G1144500' => 'mdo', 'Medtr1g094610' => 'mtr', 'Medtr4g021795' => 'mtr', 'Medtr4g023760' => 'mtr', 'Medtr7g118050' => 'mtr', 'MELO3C005582.2' => 'cme', 'MELO3C005989.2' => 'cme', 'MELO3C006192.2' => 'cme', 'MELO3C009248.2' => 'cme', 'MELO3C019817.2' => 'cme', 'Migut.B01625' => 'egut', 'Migut.B01915' => 'egut', 'Migut.F01721' => 'egut', 'Migut.J00314' => 'egut', 'MSTRG.20742' => 'ama', 'MSTRG.8134' => 'ama', 'Nitab4.5_0000096g0010' => 'nta', 'Nitab4.5_0000202g0030' => 'nta', 'Nitab4.5_0000216g0370' => 'nta', 'Nitab4.5_0000457g0230' => 'nta', 'Nitab4.5_0001702g0170' => 'nta', 'Nitab4.5_0003607g0010' => 'nta', 'Nitab4.5_0004917g0020' => 'nta', 'Nitab4.5_0007059g0010' => 'nta', 'Nitab4.5_0007184g0010' => 'nta', 'Nitab4.5_0007346g0020' => 'nta', 'Nn1g00410' => 'nnu', 'Nn1g01252' => 'nnu', 'Nn2g11168' => 'nnu', 'Nn2g13403' => 'nnu', 'Nn2g13760' => 'nnu', 'Nn4g26380' => 'nnu', 'Oeu000806.2' => 'oeu', 'Oeu005788.1' => 'oeu', 'Oeu006900.3' => 'oeu', 'Oeu007797.1' => 'oeu', 'Oeu011932.1' => 'oeu', 'Oeu022739.1' => 'oeu', 'Oeu037918.1' => 'oeu', 'Oeu055490.2' => 'oeu', 'Os01g0844400' => 'osa', 'Os02g0819100' => 'osa', 'Os03g0804300' => 'osa', 'Os05g0458000' => 'osa', 'Os07g0467800' => 'osa', 'Os12g0602200' => 'osa', 'Peaxi162Scf00013g03444' => 'pax', 'Peaxi162Scf00094g01120' => 'pax', 'Peaxi162Scf00191g01211' => 'pax', 'Peaxi162Scf00238g01110' => 'pax', 'Peaxi162Scf00330g00719' => 'pax', 'Peaxi162Scf00627g00018' => 'pax', 'PGR031G2686' => 'pgr', 'PGR042G0809' => 'pgr', 'PGR142G0193' => 'pgr', 'PGSC0003DMG400011066' => 'stu', 'PGSC0003DMG400012041' => 'stu', 'PGSC0003DMG400013678' => 'stu', 'PGSC0003DMG400023477' => 'stu', 'PGSC0003DMG400025956' => 'stu', 'PGSC0003DMG401019151' => 'stu', 'Phvul.006G116400' => 'pvu', 'Phvul.007G097300' => 'pvu', 'Phvul.010G015000' => 'pvu', 'Phvul.010G083900' => 'pvu', 'Potri.001G117100' => 'ptr', 'Potri.002G147300' => 'ptr', 'Potri.003G115600' => 'ptr', 'Potri.006G087400' => 'ptr', 'Potri.010G226100' => 'ptr', 'Potri.014G069200' => 'ptr', 'Potri.014G104000' => 'ptr', 'Potri.016G100200' => 'ptr', 'Pp3c10_20450' => 'ppa', 'Pp3c1_42400' => 'ppa', 'Pp3c3_24390' => 'ppa', 'Pp3c3_2860' => 'ppa', 'PRCOL_00003193' => 'pco', 'Prupe.2G144500' => 'ppe', 'Prupe.2G195700' => 'ppe', 'Prupe.2G209800' => 'ppe', 'Prupe.5G080000' => 'ppe', 'Prupe.6G257900' => 'ppe', 'Psat3g001160' => 'psa', 'Psat6g181880' => 'psa', 'Psat7g233720' => 'psa', 'PSO063G7587' => 'pso', 'PSO339G2145' => 'pso', 'PSO339G3369' => 'pso', 'PSO478G2747' => 'pso', 'PSO513G0140' => 'pso', 'PSO782G1614' => 'pso', 'PSO782G4889' => 'pso', 'PSO782G5485' => 'pso', 'PSO801G0241' => 'pso', 'QL07p048854' => 'qlo', 'QL08p046745' => 'qlo', 'QL08p052606' => 'qlo', 'QL08p053414' => 'qlo', 'QL08p054868' => 'qlo', 'RcHm_v2.0_Chr1g0350251' => 'rch', 'RcHm_v2.0_Chr1g0360851' => 'rch', 'RcHm_v2.0_Chr1g0362791' => 'rch', 'RcHm_v2.0_Chr3g0466281' => 'rch', 'RcHm_v2.0_Chr7g0201481' => 'rch', 'Rhsim01G0148600' => 'rsi', 'Rhsim05G0194400' => 'rsi', 'Rhsim07G0000700' => 'rsi', 'Rhsim07G0000800' => 'rsi', 'Rhsim07G0027900' => 'rsi', 'Rhsim09G0149500' => 'rsi', 'RhsimUnG0186900' => 'rsi', 'Sabra01G0089900' => 'sbr', 'Sabra02G0114700' => 'sbr', 'Sabra02G0116300' => 'sbr', 'Sabra03G0080100' => 'sbr', 'Sabra08G0024300' => 'sbr', 'Sabra10G0174300' => 'sbr', 'Sabra14G0048900' => 'sbr', 'Sabra14G0076500' => 'sbr', 'SalBow5G2513' => 'sbo', 'Sc01g0002300' => 'sci', 'Sc01g0004450' => 'sci', 'Sc06g0001680' => 'sci', 'Sc23g0003580' => 'sci', 'Sed0000913' => 'sed', 'Sed0001655' => 'sed', 'Sed0007745' => 'sed', 'Sed0010951' => 'sed', 'Sed0017599' => 'sed', 'Sed0021405' => 'sed', 'Sed0022810' => 'sed', 'SEGI_07099' => 'sgi', 'SEGI_11931' => 'sgi', 'SEGI_13187' => 'sgi', 'SEGI_29958' => 'sgi', 'SEGI_36351' => 'sgi', 'SGA_v2.0_scaffold126G33770' => 'sas', 'SGA_v2.0_scaffold153G37003' => 'sas', 'SGA_v2.0_scaffold2G01359' => 'sas', 'SGA_v2.0_scaffold5G03064' => 'sas', 'SGA_v2.0_scaffold95G28903' => 'sas', 'SHI12701' => 'shi', 'SHI26410' => 'shi', 'SHI38997' => 'shi', 'SHI53759' => 'shi', 'SHI53886' => 'shi', 'SHI54714' => 'shi', 'SMO011G0041' => 'smo', 'SMO146G0251' => 'smo', 'SMO160G0004' => 'smo', 'SMO174G0057' => 'smo', 'SMO244G0089' => 'smo', 'SMO296G0011' => 'smo', 'Solyc01g091280.3' => 'sly', 'Solyc05g047610.3' => 'sly', 'Solyc05g047640.3' => 'sly', 'Solyc05g055630.3' => 'sly', 'Solyc10g018160.2' => 'sly', 'Solyc10g084820.2' => 'sly', 'Solyc10g086565.2' => 'sly', 'Sopen01g037030' => 'spe', 'Sopen05g027920' => 'spe', 'Sopen05g034070' => 'spe', 'Sopen10g007260' => 'spe', 'Sopen10g034260' => 'spe', 'Sopen10g035950' => 'spe', 'Sp3g07710' => 'spa', 'Sp4g27420' => 'spa', 'Sp5g02450' => 'spa', 'Sp6g01280' => 'spa', 'Sp6g38480' => 'spa', 'Sp7g20780' => 'spa', 'TAR374G1413' => 'tar', 'TAR623G1777' => 'tar', 'TAR629G2370' => 'tar', 'TAR633G1759' => 'tar', 'TAR636G3387' => 'tar', 'THA.LOC104802447' => 'tha', 'THA.LOC104813916' => 'tha', 'THA.LOC104816423' => 'tha', 'THA.LOC104817246' => 'tha', 'THA.LOC104825895' => 'tha', 'Thecc.01G335200' => 'tca', 'Thecc.01G377400' => 'tca', 'Thecc.03G262200' => 'tca', 'Thecc.05G036800' => 'tca', 'Thecc.10G080500' => 'tca', 'Thecc.10G080800' => 'tca', 'Thhalv10001560m.g' => 'esa', 'Thhalv10006120m.g' => 'esa', 'Thhalv10014375m.g' => 'esa', 'Thhalv10021264m.g' => 'esa', 'Thhalv10028856m.g' => 'esa', 'TPR.G1914' => 'tpr', 'TPR.G4757' => 'tpr', 'TPR.G5595' => 'tpr', 'TWI14G0952' => 'twi', 'TWI14G1307' => 'twi', 'TWI38G2143' => 'twi', 'TWI59G0826' => 'twi', 'TWI77G0527' => 'twi', 'TWI81G0150' => 'twi', 'unitig_21.g21018' => 'ugi', 'unitig_26.g9725' => 'ugi', 'unitig_744.g24653' => 'ugi', 'unitig_749.g13778' => 'ugi', 'unitig_899.g15035' => 'ugi', 'vmacro04296' => 'vma', 'vmacro04852' => 'vma', 'vmacro13404' => 'vma', 'vmacro20169' => 'vma', 'vmacro21014' => 'vma', 'VMungo0331G0237' => 'vmu', 'VMungo0331G0706' => 'vmu', 'VMungo0331G1361' => 'vmu', 'VMungo0331G1489' => 'vmu', 'VMungo0540G1037' => 'vmu', 'VMungo0720G2487' => 'vmu', 'VMungo0720G2721' => 'vmu', 'Zm00001eb086860' => 'zma', 'Zm00001eb104760' => 'zma', 'Zm00001eb148220' => 'zma', 'Zm00001eb259030' => 'zma', 'Zm00001eb289590' => 'zma', 'Zm00001eb420150' => 'zma' ) $gf_id = 'HOM05D000968' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000968' ) $data_identifier = 'HOM05D000968' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 19, 'bol' => (int) 9, 'bra' => (int) 12, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 5, 'ccan' => (int) 7, 'cde' => (int) 5, 'cfa' => (int) 8, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 4, 'dca' => (int) 5, 'din' => (int) 5, 'dzi' => (int) 12, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 25, 'fve' => (int) 5, 'gma' => (int) 9, 'ghi' => (int) 18, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 7, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 5, 'sun' => (int) 2, 'lal' => (int) 9, 'lja' => (int) 5, 'lonja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 9, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 2, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 3, 'stu' => (int) 6, 'pvu' => (int) 4, 'ptr' => (int) 8, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 3, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 1, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 5, 'sas' => (int) 5, 'shi' => (int) 6, 'smo' => (int) 6, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 3, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420150' $species_info = array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ) $local_species = 'stu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000968', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p31690' => 'bna', 'A03p36040' => 'bna', 'A03p53730' => 'bna', 'A04p01410' => 'bna', 'A05p05420' => 'bna', 'A05p39630' => 'bna', 'A05p39640' => 'bna', 'A09p00970' => 'bna', 'A09p53060' => 'bna', 'A10p31890' => 'bna', 'Aa31LG10G15040' => 'aar', 'Aa31LG1G21090' => 'aar', 'Aa31LG1G26900' => 'aar', 'Aa31LG3G1820' => 'aar', 'Aa31LG5G1100' => 'aar', 'Aa31LG6G4740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2265' => 'aag', 'Actinidia07998' => 'ach', 'Actinidia11266' => 'ach', 'Actinidia12682' => 'ach', 'Actinidia26479' => 'ach', 'Actinidia31406' => 'ach', 'Actinidia32437' => 'ach', 'Actinidia38862' => 'ach', 'Ah.05g174230' => 'amhyb', 'Ah.05g179070' => 'amhyb', 'Ah.05g179090' => 'amhyb', 'Ah.12g059950' => 'amhyb', 'AL3G20480' => 'aly', 'AL4G44520' => 'aly', 'AL5G43110' => 'aly', 'AL6G13890' => 'aly', 'AL6G52620' => 'aly', 'AL7G30830' => 'aly', 'Aqoxy1G00899' => 'aox', 'Aqoxy5G04333' => 'aox', 'Aqoxy7G00641' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3IZ0NN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4EF6AW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W9P8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79GA3M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C43NQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFCU6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G95YVJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCHK29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LU1UG8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX91RN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGB4B1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8DA0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9H7JI' => 'arhy', 'AT3G09320' => 'ath', 'AT3G60800' => 'ath', 'AT4G00840' => 'ath', 'AT4G22750' => 'ath', 'AT5G04270' => 'ath', 'ATR0090G003' => 'atr', 'ATR0559G349' => 'atr', 'ATR0680G261' => 'atr', 'ATR0810G048' => 'atr', 'Atru.chr12.831' => 'acertr', 'Atru.chr5.303' => 'acertr', 'Atru.chr5.748' => 'acertr', 'Atru.chr8.1999' => 'acertr', 'Atru.chr9.1436' => 'acertr', 'AUR62004211' => 'cqu', 'AUR62004548' => 'cqu', 'AUR62013637' => 'cqu', 'AUR62022662' => 'cqu', 'AUR62025777' => 'cqu', 'AUR62042386' => 'cqu', 'BcaB01g02310' => 'bca', 'BcaB01g06062' => 'bca', 'BcaB02g08975' => 'bca', 'BcaB02g08980' => 'bca', 'BcaC01g04228' => 'bca', 'BcaC01g06830' => 'bca', 'BcaC02g10186' => 'bca', 'BcaC02g12214' => 'bca', 'BcaC04g24101' => 'bca', 'BcaC05g29520' => 'bca', 'BcaC05g29661' => 'bca', 'BcaC06g32130' => 'bca', 'BcaC06g32131' => 'bca', 'BcaC07g40601' => 'bca', 'BcaC07g42641' => 'bca', 'BcaNung01038' => 'bca', 'BcaNung01676' => 'bca', 'BcaNung02480' => 'bca', 'BcaNung07376' => 'bca', 'BolC3t16146H' => 'bol', 'BolC3t16637H' => 'bol', 'BolC4t22257H' => 'bol', 'BolC4t24728H' => 'bol', 'BolC5t34517H' => 'bol', 'BolC7t45703H' => 'bol', 'BolC8t51166H' => 'bol', 'BolC9t53038H' => 'bol', 'BolC9t60000H' => 'bol', 'BraA01t01345Z' => 'bra', 'BraA01t01346Z' => 'bra', 'BraA01t01348Z' => 'bra', 'BraA03t12347Z' => 'bra', 'BraA03t12775Z' => 'bra', 'BraA03t14439Z' => 'bra', 'BraA04t15860Z' => 'bra', 'BraA05t19511Z' => 'bra', 'BraA05t22746Z' => 'bra', 'BraA09t35767Z' => 'bra', 'BraA09t40732Z' => 'bra', 'BraA10t45233Z' => 'bra', 'C03p38720' => 'bna', 'C03p43680' => 'bna', 'C04p06350' => 'bna', 'C04p31800' => 'bna', 'C05p58680' => 'bna', 'C07p52110' => 'bna', 'C08p35760' => 'bna', 'C09p01050' => 'bna', 'C09p72600' => 'bna', 'CAN.G106.2' => 'can', 'CAN.G1482.1' => 'can', 'CAN.G324.12' => 'can', 'CAN.G388.20' => 'can', 'CAN.G412.7' => 'can', 'CAN.G694.32' => 'can', 'CAN.G92.12' => 'can', 'CANSAT11G2353' => 'cansat', 'CANSAT21G1398' => 'cansat', 'CANSAT56G2456' => 'cansat', 'CANSAT56G3031' => 'cansat', 'CANSAT56G4539' => 'cansat', 'CARHR083680' => 'chi', 'CARHR171190' => 'chi', 'CARHR209010' => 'chi', 'CARHR229680' => 'chi', 'CARHR249490' => 'chi', 'Carub.0003s0844' => 'cru', 'Carub.0005s2755' => 'cru', 'Carub.0006s0322' => 'cru', 'Carub.0006s3586' => 'cru', 'Carub.0007s1855' => 'cru', 'Ca_07808_v3' => 'car', 'Ca_09535_v3' => 'car', 'Ca_10548_v3' => 'car', 'Ca_19913_v3' => 'car', 'Ca_19916_v3' => 'car', 'Ca_19975_v3' => 'car', 'CBR_g22876' => 'cbr', 'CBR_g22879' => 'cbr', 'CBR_g38491' => 'cbr', 'CBR_g54185' => 'cbr', 'CBR_g54190' => 'cbr', 'Cc02_g11020' => 'ccan', 'Cc02_g23920' => 'ccan', 'Cc02_g39860' => 'ccan', 'Cc02_g39870' => 'ccan', 'Cc03_g06760' => 'ccan', 'Cc06_g02450' => 'ccan', 'Cc09_g09450' => 'ccan', 'CDE02G1959' => 'cde', 'CDE04G0600' => 'cde', 'CDE07G1996' => 'cde', 'CDE07G2078' => 'cde', 'CDE11G0611' => 'cde', 'Cfa001683' => 'cfa', 'Cfa001734' => 'cfa', 'Cfa001737' => 'cfa', 'Cfa003751' => 'cfa', 'Cfa012019' => 'cfa', 'Cfa017353' => 'cfa', 'Cfa017732' => 'cfa', 'Cfa022464' => 'cfa', 'Ciclev10012400m.g' => 'ccl', 'Ciclev10021242m.g' => 'ccl', 'Ciclev10021302m.g' => 'ccl', 'Ciclev10021463m.g' => 'ccl', 'Ciclev10032359m.g' => 'ccl', 'CiPaw.01G081000' => 'cil', 'CiPaw.01G262500' => 'cil', 'CiPaw.01G269800' => 'cil', 'CiPaw.02G168400' => 'cil', 'CiPaw.05G119500' => 'cil', 'CiPaw.11G147300' => 'cil', 'ClCG01G003630' => 'cla', 'ClCG05G000510' => 'cla', 'ClCG05G002300' => 'cla', 'ClCG08G007650' => 'cla', 'ClCG10G021250' => 'cla', 'COL.COLO4_06218' => 'col', 'COL.COLO4_12538' => 'col', 'COL.COLO4_14775' => 'col', 'COL.COLO4_23875' => 'col', 'Cpa.g.sc141.16' => 'cpa', 'Cpa.g.sc169.16' => 'cpa', 'Cpa.g.sc244.4' => 'cpa', 'Cpa.g.sc244.5' => 'cpa', 'Cpa.g.sc29.87' => 'cpa', 'Cpa.g.sc53.115' => 'cpa', 'Cre03.g207502' => 'cre', 'Cre06.g277000' => 'cre', 'Cre09.g394050' => 'cre', 'CsaV3_3G007680' => 'csa', 'CsaV3_3G009710' => 'csa', 'CsaV3_3G034790' => 'csa', 'CsaV3_5G003750' => 'csa', 'CsaV3_6G036620' => 'csa', 'CSS0002288' => 'camsi', 'CSS0011250' => 'camsi', 'CSS0021619' => 'camsi', 'CSS0046701' => 'camsi', 'DCAR_006420' => 'dca', 'DCAR_006865' => 'dca', 'DCAR_008558' => 'dca', 'DCAR_028754' => 'dca', 'DCAR_028755' => 'dca', 'Dinv31218' => 'din', 'Dinv32371' => 'din', 'Dinv34250' => 'din', 'Dinv37156' => 'din', 'Dinv43704' => 'din', 'Duzib093G1811' => 'dzi', 'Duzib106G1622' => 'dzi', 'Duzib114G0504' => 'dzi', 'Duzib128G0338' => 'dzi', 'Duzib128G1577' => 'dzi', 'Duzib133G0104' => 'dzi', 'Duzib133G1080' => 'dzi', 'Duzib138G0324' => 'dzi', 'Duzib138G0394' => 'dzi', 'Duzib205G0122' => 'dzi', 'Duzib268G1020' => 'dzi', 'Duzib268G1359' => 'dzi', 'ECA232G3929' => 'eca', 'ECA236G2210' => 'eca', 'ECA236G2287' => 'eca', 'ECA240G4568' => 'eca', 'ECA247G0894' => 'eca', 'EL10Ac1g00200' => 'bvu', 'EL10Ac1g00886' => 'bvu', 'EL10As1g23091' => 'bvu', 'EL10As1g23092' => 'bvu', 'Eucgr.A01284' => 'egr', 'Eucgr.A01285' => 'egr', 'Eucgr.D02456' => 'egr', 'Eucgr.E00018' => 'egr', 'Eucgr.E01439' => 'egr', 'Eucgr.G02859' => 'egr', 'FAN01G0168' => 'fan', 'FAN01G0453' => 'fan', 'FAN01G2761' => 'fan', 'FAN02G1239' => 'fan', 'FAN03G0645' => 'fan', 'FAN03G2707' => 'fan', 'FAN03G2978' => 'fan', 'FAN04G0227' => 'fan', 'FAN06G0091' => 'fan', 'FAN06G1418' => 'fan', 'FAN06G1512' => 'fan', 'FAN06G1986' => 'fan', 'FAN06G2905' => 'fan', 'FAN06G4325' => 'fan', 'FAN08G0033' => 'fan', 'FAN09G0642' => 'fan', 'FAN10G1763' => 'fan', 'FAN10G2026' => 'fan', 'FAN10G2513' => 'fan', 'FAN10G3402' => 'fan', 'FAN10G3564' => 'fan', 'FAN10G3987' => 'fan', 'FAN13G1490' => 'fan', 'FAN14G5857' => 'fan', 'FAN18G1188' => 'fan', 'FvH4_5g00750' => 'fve', 'FvH4_6g13410' => 'fve', 'FvH4_7g11740' => 'fve', 'FvH4_7g17410' => 'fve', 'FvH4_7g18860' => 'fve', 'Glyma.01G099100' => 'gma', 'Glyma.01G142300' => 'gma', 'Glyma.03G025500' => 'gma', 'Glyma.03G069700' => 'gma', 'Glyma.03G260000' => 'gma', 'Glyma.09G269800' => 'gma', 'Glyma.10G208700' => 'gma', 'Glyma.18G220400' => 'gma', 'Glyma.20G182000' => 'gma', 'Gohir.A01G221726' => 'ghi', 'Gohir.A07G134600' => 'ghi', 'Gohir.A07G146000' => 'ghi', 'Gohir.A08G173900' => 'ghi', 'Gohir.A09G194900' => 'ghi', 'Gohir.A10G204100' => 'ghi', 'Gohir.A11G080600' => 'ghi', 'Gohir.A11G327500' => 'ghi', 'Gohir.A12G101800' => 'ghi', 'Gohir.D01G211200' => 'ghi', 'Gohir.D07G139200' => 'ghi', 'Gohir.D07G152100' => 'ghi', 'Gohir.D08G192600' => 'ghi', 'Gohir.D09G189200' => 'ghi', 'Gohir.D10G212000' => 'ghi', 'Gohir.D11G085200' => 'ghi', 'Gohir.D11G346400' => 'ghi', 'Gohir.D12G104800' => 'ghi', 'Gorai.001G151300' => 'gra', 'Gorai.001G174100' => 'gra', 'Gorai.002G257000' => 'gra', 'Gorai.004G202600' => 'gra', 'Gorai.007G090900' => 'gra', 'Gorai.007G376700' => 'gra', 'Gorai.008G114100' => 'gra', 'Gorai.011G237900' => 'gra', 'GSVIVG01005450001' => 'vvi', 'GSVIVG01016232001' => 'vvi', 'GSVIVG01026157001' => 'vvi', 'GSVIVG01027419001' => 'vvi', 'GSVIVG01027631001' => 'vvi', 'GSVIVG01034143001' => 'vvi', 'HanXRQChr03g0093921' => 'han', 'HanXRQChr04g0120001' => 'han', 'HanXRQChr04g0122561' => 'han', 'HanXRQChr09g0246851' => 'han', 'HanXRQChr10g0293311' => 'han', 'HanXRQChr13g0425231' => 'han', 'HanXRQChr16g0532571' => 'han', 'Haze_09050' => 'cav', 'Haze_15715' => 'cav', 'Haze_15716' => 'cav', 'Haze_16803' => 'cav', 'Haze_16850' => 'cav', 'Hma1.2p1_0301F.1_g118655' => 'hma', 'Hma1.2p1_0309F.1_g120590' => 'hma', 'Hma1.2p1_0936F.1_g238900' => 'hma', 'Hma1.2p1_3552F.1_g336740' => 'hma', 'HPP92_003520' => 'vpl', 'HPP92_006628' => 'vpl', 'HPP92_006645' => 'vpl', 'HPP92_014669' => 'vpl', 'HPP92_015077' => 'vpl', 'Hund16742' => 'sun', 'Hund17022' => 'sun', 'Lalb_Chr02g0152131' => 'lal', 'Lalb_Chr05g0225371' => 'lal', 'Lalb_Chr07g0189841' => 'lal', 'Lalb_Chr07g0192961' => 'lal', 'Lalb_Chr12g0208221' => 'lal', 'Lalb_Chr13g0291211' => 'lal', 'Lalb_Chr13g0291781' => 'lal', 'Lalb_Chr18g0044651' => 'lal', 'Lalb_Chr21g0313731' => 'lal', 'Lj1g0022533' => 'lja', 'Lj2A18T50' => 'lonja', 'Lj2A92G93' => 'lonja', 'Lj3A965T73' => 'lonja', 'Lj3g0000673' => 'lja', 'Lj3g0002666' => 'lja', 'Lj4g0016985' => 'lja', 'Lj5g0003625' => 'lja', 'Lj7A529G36' => 'lonja', 'Lj9A569T49' => 'lonja', 'Lj9A604T63' => 'lonja', 'Lsat_1_v5_gn_3_132060' => 'lsa', 'Lsat_1_v5_gn_4_68941' => 'lsa', 'Lsat_1_v5_gn_5_95580' => 'lsa', 'Lsat_1_v5_gn_7_161' => 'lsa', 'Lsat_1_v5_gn_7_7041' => 'lsa', 'Lsat_1_v5_gn_9_33481' => 'lsa', 'Lsat_1_v5_gn_9_68260' => 'lsa', 'Manes.01G073100' => 'mes', 'Manes.01G266300' => 'mes', 'Manes.02G033300' => 'mes', 'Manes.05G017900' => 'mes', 'Manes.05G046100' => 'mes', 'Manes.08G080900' => 'mes', 'Manes.10G049400' => 'mes', 'Mapoly0009s0186' => 'mpo', 'Mapoly0036s0118' => 'mpo', 'Mapoly0101s0046' => 'mpo', 'MBI04_g30218_MAGBIO' => 'mbi', 'MBI04_g35564_MAGBIO' => 'mbi', 'MBI12_g34011_MAGBIO' => 'mbi', 'MBI14_g04655_MAGBIO' => 'mbi', 'MCO07G653' => 'mco', 'MCO10G173' => 'mco', 'MD01G1087100' => 'mdo', 'MD01G1104200' => 'mdo', 'MD02G1205100' => 'mdo', 'MD04G1079200' => 'mdo', 'MD04G1131400' => 'mdo', 'MD07G1121600' => 'mdo', 'MD07G1157300' => 'mdo', 'MD07G1171000' => 'mdo', 'MD12G1144500' => 'mdo', 'Medtr1g094610' => 'mtr', 'Medtr4g021795' => 'mtr', 'Medtr4g023760' => 'mtr', 'Medtr7g118050' => 'mtr', 'MELO3C005582.2' => 'cme', 'MELO3C005989.2' => 'cme', 'MELO3C006192.2' => 'cme', 'MELO3C009248.2' => 'cme', 'MELO3C019817.2' => 'cme', 'Migut.B01625' => 'egut', 'Migut.B01915' => 'egut', 'Migut.F01721' => 'egut', 'Migut.J00314' => 'egut', 'MSTRG.20742' => 'ama', 'MSTRG.8134' => 'ama', 'Nitab4.5_0000096g0010' => 'nta', 'Nitab4.5_0000202g0030' => 'nta', 'Nitab4.5_0000216g0370' => 'nta', 'Nitab4.5_0000457g0230' => 'nta', 'Nitab4.5_0001702g0170' => 'nta', 'Nitab4.5_0003607g0010' => 'nta', 'Nitab4.5_0004917g0020' => 'nta', 'Nitab4.5_0007059g0010' => 'nta', 'Nitab4.5_0007184g0010' => 'nta', 'Nitab4.5_0007346g0020' => 'nta', 'Nn1g00410' => 'nnu', 'Nn1g01252' => 'nnu', 'Nn2g11168' => 'nnu', 'Nn2g13403' => 'nnu', 'Nn2g13760' => 'nnu', 'Nn4g26380' => 'nnu', 'Oeu000806.2' => 'oeu', 'Oeu005788.1' => 'oeu', 'Oeu006900.3' => 'oeu', 'Oeu007797.1' => 'oeu', 'Oeu011932.1' => 'oeu', 'Oeu022739.1' => 'oeu', 'Oeu037918.1' => 'oeu', 'Oeu055490.2' => 'oeu', 'Os01g0844400' => 'osa', 'Os02g0819100' => 'osa', 'Os03g0804300' => 'osa', 'Os05g0458000' => 'osa', 'Os07g0467800' => 'osa', 'Os12g0602200' => 'osa', 'Peaxi162Scf00013g03444' => 'pax', 'Peaxi162Scf00094g01120' => 'pax', 'Peaxi162Scf00191g01211' => 'pax', 'Peaxi162Scf00238g01110' => 'pax', 'Peaxi162Scf00330g00719' => 'pax', 'Peaxi162Scf00627g00018' => 'pax', 'PGR031G2686' => 'pgr', 'PGR042G0809' => 'pgr', 'PGR142G0193' => 'pgr', 'PGSC0003DMG400011066' => 'stu', 'PGSC0003DMG400012041' => 'stu', 'PGSC0003DMG400013678' => 'stu', 'PGSC0003DMG400023477' => 'stu', 'PGSC0003DMG400025956' => 'stu', 'PGSC0003DMG401019151' => 'stu', 'Phvul.006G116400' => 'pvu', 'Phvul.007G097300' => 'pvu', 'Phvul.010G015000' => 'pvu', 'Phvul.010G083900' => 'pvu', 'Potri.001G117100' => 'ptr', 'Potri.002G147300' => 'ptr', 'Potri.003G115600' => 'ptr', 'Potri.006G087400' => 'ptr', 'Potri.010G226100' => 'ptr', 'Potri.014G069200' => 'ptr', 'Potri.014G104000' => 'ptr', 'Potri.016G100200' => 'ptr', 'Pp3c10_20450' => 'ppa', 'Pp3c1_42400' => 'ppa', 'Pp3c3_24390' => 'ppa', 'Pp3c3_2860' => 'ppa', 'PRCOL_00003193' => 'pco', 'Prupe.2G144500' => 'ppe', 'Prupe.2G195700' => 'ppe', 'Prupe.2G209800' => 'ppe', 'Prupe.5G080000' => 'ppe', 'Prupe.6G257900' => 'ppe', 'Psat3g001160' => 'psa', 'Psat6g181880' => 'psa', 'Psat7g233720' => 'psa', 'PSO063G7587' => 'pso', 'PSO339G2145' => 'pso', 'PSO339G3369' => 'pso', 'PSO478G2747' => 'pso', 'PSO513G0140' => 'pso', 'PSO782G1614' => 'pso', 'PSO782G4889' => 'pso', 'PSO782G5485' => 'pso', 'PSO801G0241' => 'pso', 'QL07p048854' => 'qlo', 'QL08p046745' => 'qlo', 'QL08p052606' => 'qlo', 'QL08p053414' => 'qlo', 'QL08p054868' => 'qlo', 'RcHm_v2.0_Chr1g0350251' => 'rch', 'RcHm_v2.0_Chr1g0360851' => 'rch', 'RcHm_v2.0_Chr1g0362791' => 'rch', 'RcHm_v2.0_Chr3g0466281' => 'rch', 'RcHm_v2.0_Chr7g0201481' => 'rch', 'Rhsim01G0148600' => 'rsi', 'Rhsim05G0194400' => 'rsi', 'Rhsim07G0000700' => 'rsi', 'Rhsim07G0000800' => 'rsi', 'Rhsim07G0027900' => 'rsi', 'Rhsim09G0149500' => 'rsi', 'RhsimUnG0186900' => 'rsi', 'Sabra01G0089900' => 'sbr', 'Sabra02G0114700' => 'sbr', 'Sabra02G0116300' => 'sbr', 'Sabra03G0080100' => 'sbr', 'Sabra08G0024300' => 'sbr', 'Sabra10G0174300' => 'sbr', 'Sabra14G0048900' => 'sbr', 'Sabra14G0076500' => 'sbr', 'SalBow5G2513' => 'sbo', 'Sc01g0002300' => 'sci', 'Sc01g0004450' => 'sci', 'Sc06g0001680' => 'sci', 'Sc23g0003580' => 'sci', 'Sed0000913' => 'sed', 'Sed0001655' => 'sed', 'Sed0007745' => 'sed', 'Sed0010951' => 'sed', 'Sed0017599' => 'sed', 'Sed0021405' => 'sed', 'Sed0022810' => 'sed', 'SEGI_07099' => 'sgi', 'SEGI_11931' => 'sgi', 'SEGI_13187' => 'sgi', 'SEGI_29958' => 'sgi', 'SEGI_36351' => 'sgi', 'SGA_v2.0_scaffold126G33770' => 'sas', 'SGA_v2.0_scaffold153G37003' => 'sas', 'SGA_v2.0_scaffold2G01359' => 'sas', 'SGA_v2.0_scaffold5G03064' => 'sas', 'SGA_v2.0_scaffold95G28903' => 'sas', 'SHI12701' => 'shi', 'SHI26410' => 'shi', 'SHI38997' => 'shi', 'SHI53759' => 'shi', 'SHI53886' => 'shi', 'SHI54714' => 'shi', 'SMO011G0041' => 'smo', 'SMO146G0251' => 'smo', 'SMO160G0004' => 'smo', 'SMO174G0057' => 'smo', 'SMO244G0089' => 'smo', 'SMO296G0011' => 'smo', 'Solyc01g091280.3' => 'sly', 'Solyc05g047610.3' => 'sly', 'Solyc05g047640.3' => 'sly', 'Solyc05g055630.3' => 'sly', 'Solyc10g018160.2' => 'sly', 'Solyc10g084820.2' => 'sly', 'Solyc10g086565.2' => 'sly', 'Sopen01g037030' => 'spe', 'Sopen05g027920' => 'spe', 'Sopen05g034070' => 'spe', 'Sopen10g007260' => 'spe', 'Sopen10g034260' => 'spe', 'Sopen10g035950' => 'spe', 'Sp3g07710' => 'spa', 'Sp4g27420' => 'spa', 'Sp5g02450' => 'spa', 'Sp6g01280' => 'spa', 'Sp6g38480' => 'spa', 'Sp7g20780' => 'spa', 'TAR374G1413' => 'tar', 'TAR623G1777' => 'tar', 'TAR629G2370' => 'tar', 'TAR633G1759' => 'tar', 'TAR636G3387' => 'tar', 'THA.LOC104802447' => 'tha', 'THA.LOC104813916' => 'tha', 'THA.LOC104816423' => 'tha', 'THA.LOC104817246' => 'tha', 'THA.LOC104825895' => 'tha', 'Thecc.01G335200' => 'tca', 'Thecc.01G377400' => 'tca', 'Thecc.03G262200' => 'tca', 'Thecc.05G036800' => 'tca', 'Thecc.10G080500' => 'tca', 'Thecc.10G080800' => 'tca', 'Thhalv10001560m.g' => 'esa', 'Thhalv10006120m.g' => 'esa', 'Thhalv10014375m.g' => 'esa', 'Thhalv10021264m.g' => 'esa', 'Thhalv10028856m.g' => 'esa', 'TPR.G1914' => 'tpr', 'TPR.G4757' => 'tpr', 'TPR.G5595' => 'tpr', 'TWI14G0952' => 'twi', 'TWI14G1307' => 'twi', 'TWI38G2143' => 'twi', 'TWI59G0826' => 'twi', 'TWI77G0527' => 'twi', 'TWI81G0150' => 'twi', 'unitig_21.g21018' => 'ugi', 'unitig_26.g9725' => 'ugi', 'unitig_744.g24653' => 'ugi', 'unitig_749.g13778' => 'ugi', 'unitig_899.g15035' => 'ugi', 'vmacro04296' => 'vma', 'vmacro04852' => 'vma', 'vmacro13404' => 'vma', 'vmacro20169' => 'vma', 'vmacro21014' => 'vma', 'VMungo0331G0237' => 'vmu', 'VMungo0331G0706' => 'vmu', 'VMungo0331G1361' => 'vmu', 'VMungo0331G1489' => 'vmu', 'VMungo0540G1037' => 'vmu', 'VMungo0720G2487' => 'vmu', 'VMungo0720G2721' => 'vmu', 'Zm00001eb086860' => 'zma', 'Zm00001eb104760' => 'zma', 'Zm00001eb148220' => 'zma', 'Zm00001eb259030' => 'zma', 'Zm00001eb289590' => 'zma', 'Zm00001eb420150' => 'zma' ), 'gf_id' => 'HOM05D000968', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000968' ), 'data_identifier' => 'HOM05D000968', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000968', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p31690' => 'bna', 'A03p36040' => 'bna', 'A03p53730' => 'bna', 'A04p01410' => 'bna', 'A05p05420' => 'bna', 'A05p39630' => 'bna', 'A05p39640' => 'bna', 'A09p00970' => 'bna', 'A09p53060' => 'bna', 'A10p31890' => 'bna', 'Aa31LG10G15040' => 'aar', 'Aa31LG1G21090' => 'aar', 'Aa31LG1G26900' => 'aar', 'Aa31LG3G1820' => 'aar', 'Aa31LG5G1100' => 'aar', 'Aa31LG6G4740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2265' => 'aag', 'Actinidia07998' => 'ach', 'Actinidia11266' => 'ach', 'Actinidia12682' => 'ach', 'Actinidia26479' => 'ach', 'Actinidia31406' => 'ach', 'Actinidia32437' => 'ach', 'Actinidia38862' => 'ach', 'Ah.05g174230' => 'amhyb', 'Ah.05g179070' => 'amhyb', 'Ah.05g179090' => 'amhyb', 'Ah.12g059950' => 'amhyb', 'AL3G20480' => 'aly', 'AL4G44520' => 'aly', 'AL5G43110' => 'aly', 'AL6G13890' => 'aly', 'AL6G52620' => 'aly', 'AL7G30830' => 'aly', 'Aqoxy1G00899' => 'aox', 'Aqoxy5G04333' => 'aox', 'Aqoxy7G00641' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3IZ0NN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4EF6AW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W9P8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79GA3M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C43NQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFCU6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G95YVJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCHK29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LU1UG8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX91RN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGB4B1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8DA0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9H7JI' => 'arhy', 'AT3G09320' => 'ath', 'AT3G60800' => 'ath', 'AT4G00840' => 'ath', 'AT4G22750' => 'ath', 'AT5G04270' => 'ath', 'ATR0090G003' => 'atr', 'ATR0559G349' => 'atr', 'ATR0680G261' => 'atr', 'ATR0810G048' => 'atr', 'Atru.chr12.831' => 'acertr', 'Atru.chr5.303' => 'acertr', 'Atru.chr5.748' => 'acertr', 'Atru.chr8.1999' => 'acertr', 'Atru.chr9.1436' => 'acertr', 'AUR62004211' => 'cqu', 'AUR62004548' => 'cqu', 'AUR62013637' => 'cqu', 'AUR62022662' => 'cqu', 'AUR62025777' => 'cqu', 'AUR62042386' => 'cqu', 'BcaB01g02310' => 'bca', 'BcaB01g06062' => 'bca', 'BcaB02g08975' => 'bca', 'BcaB02g08980' => 'bca', 'BcaC01g04228' => 'bca', 'BcaC01g06830' => 'bca', 'BcaC02g10186' => 'bca', 'BcaC02g12214' => 'bca', 'BcaC04g24101' => 'bca', 'BcaC05g29520' => 'bca', 'BcaC05g29661' => 'bca', 'BcaC06g32130' => 'bca', 'BcaC06g32131' => 'bca', 'BcaC07g40601' => 'bca', 'BcaC07g42641' => 'bca', 'BcaNung01038' => 'bca', 'BcaNung01676' => 'bca', 'BcaNung02480' => 'bca', 'BcaNung07376' => 'bca', 'BolC3t16146H' => 'bol', 'BolC3t16637H' => 'bol', 'BolC4t22257H' => 'bol', 'BolC4t24728H' => 'bol', 'BolC5t34517H' => 'bol', 'BolC7t45703H' => 'bol', 'BolC8t51166H' => 'bol', 'BolC9t53038H' => 'bol', 'BolC9t60000H' => 'bol', 'BraA01t01345Z' => 'bra', 'BraA01t01346Z' => 'bra', 'BraA01t01348Z' => 'bra', 'BraA03t12347Z' => 'bra', 'BraA03t12775Z' => 'bra', 'BraA03t14439Z' => 'bra', 'BraA04t15860Z' => 'bra', 'BraA05t19511Z' => 'bra', 'BraA05t22746Z' => 'bra', 'BraA09t35767Z' => 'bra', 'BraA09t40732Z' => 'bra', 'BraA10t45233Z' => 'bra', 'C03p38720' => 'bna', 'C03p43680' => 'bna', 'C04p06350' => 'bna', 'C04p31800' => 'bna', 'C05p58680' => 'bna', 'C07p52110' => 'bna', 'C08p35760' => 'bna', 'C09p01050' => 'bna', 'C09p72600' => 'bna', 'CAN.G106.2' => 'can', 'CAN.G1482.1' => 'can', 'CAN.G324.12' => 'can', 'CAN.G388.20' => 'can', 'CAN.G412.7' => 'can', 'CAN.G694.32' => 'can', 'CAN.G92.12' => 'can', 'CANSAT11G2353' => 'cansat', 'CANSAT21G1398' => 'cansat', 'CANSAT56G2456' => 'cansat', 'CANSAT56G3031' => 'cansat', 'CANSAT56G4539' => 'cansat', 'CARHR083680' => 'chi', 'CARHR171190' => 'chi', 'CARHR209010' => 'chi', 'CARHR229680' => 'chi', 'CARHR249490' => 'chi', 'Carub.0003s0844' => 'cru', 'Carub.0005s2755' => 'cru', 'Carub.0006s0322' => 'cru', 'Carub.0006s3586' => 'cru', 'Carub.0007s1855' => 'cru', 'Ca_07808_v3' => 'car', 'Ca_09535_v3' => 'car', 'Ca_10548_v3' => 'car', 'Ca_19913_v3' => 'car', 'Ca_19916_v3' => 'car', 'Ca_19975_v3' => 'car', 'CBR_g22876' => 'cbr', 'CBR_g22879' => 'cbr', 'CBR_g38491' => 'cbr', 'CBR_g54185' => 'cbr', 'CBR_g54190' => 'cbr', 'Cc02_g11020' => 'ccan', 'Cc02_g23920' => 'ccan', 'Cc02_g39860' => 'ccan', 'Cc02_g39870' => 'ccan', 'Cc03_g06760' => 'ccan', 'Cc06_g02450' => 'ccan', 'Cc09_g09450' => 'ccan', 'CDE02G1959' => 'cde', 'CDE04G0600' => 'cde', 'CDE07G1996' => 'cde', 'CDE07G2078' => 'cde', 'CDE11G0611' => 'cde', 'Cfa001683' => 'cfa', 'Cfa001734' => 'cfa', 'Cfa001737' => 'cfa', 'Cfa003751' => 'cfa', 'Cfa012019' => 'cfa', 'Cfa017353' => 'cfa', 'Cfa017732' => 'cfa', 'Cfa022464' => 'cfa', 'Ciclev10012400m.g' => 'ccl', 'Ciclev10021242m.g' => 'ccl', 'Ciclev10021302m.g' => 'ccl', 'Ciclev10021463m.g' => 'ccl', 'Ciclev10032359m.g' => 'ccl', 'CiPaw.01G081000' => 'cil', 'CiPaw.01G262500' => 'cil', 'CiPaw.01G269800' => 'cil', 'CiPaw.02G168400' => 'cil', 'CiPaw.05G119500' => 'cil', 'CiPaw.11G147300' => 'cil', 'ClCG01G003630' => 'cla', 'ClCG05G000510' => 'cla', 'ClCG05G002300' => 'cla', 'ClCG08G007650' => 'cla', 'ClCG10G021250' => 'cla', 'COL.COLO4_06218' => 'col', 'COL.COLO4_12538' => 'col', 'COL.COLO4_14775' => 'col', 'COL.COLO4_23875' => 'col', 'Cpa.g.sc141.16' => 'cpa', 'Cpa.g.sc169.16' => 'cpa', 'Cpa.g.sc244.4' => 'cpa', 'Cpa.g.sc244.5' => 'cpa', 'Cpa.g.sc29.87' => 'cpa', 'Cpa.g.sc53.115' => 'cpa', 'Cre03.g207502' => 'cre', 'Cre06.g277000' => 'cre', 'Cre09.g394050' => 'cre', 'CsaV3_3G007680' => 'csa', 'CsaV3_3G009710' => 'csa', 'CsaV3_3G034790' => 'csa', 'CsaV3_5G003750' => 'csa', 'CsaV3_6G036620' => 'csa', 'CSS0002288' => 'camsi', 'CSS0011250' => 'camsi', 'CSS0021619' => 'camsi', 'CSS0046701' => 'camsi', 'DCAR_006420' => 'dca', 'DCAR_006865' => 'dca', 'DCAR_008558' => 'dca', 'DCAR_028754' => 'dca', 'DCAR_028755' => 'dca', 'Dinv31218' => 'din', 'Dinv32371' => 'din', 'Dinv34250' => 'din', 'Dinv37156' => 'din', 'Dinv43704' => 'din', 'Duzib093G1811' => 'dzi', 'Duzib106G1622' => 'dzi', 'Duzib114G0504' => 'dzi', 'Duzib128G0338' => 'dzi', 'Duzib128G1577' => 'dzi', 'Duzib133G0104' => 'dzi', 'Duzib133G1080' => 'dzi', 'Duzib138G0324' => 'dzi', 'Duzib138G0394' => 'dzi', 'Duzib205G0122' => 'dzi', 'Duzib268G1020' => 'dzi', 'Duzib268G1359' => 'dzi', 'ECA232G3929' => 'eca', 'ECA236G2210' => 'eca', 'ECA236G2287' => 'eca', 'ECA240G4568' => 'eca', 'ECA247G0894' => 'eca', 'EL10Ac1g00200' => 'bvu', 'EL10Ac1g00886' => 'bvu', 'EL10As1g23091' => 'bvu', 'EL10As1g23092' => 'bvu', 'Eucgr.A01284' => 'egr', 'Eucgr.A01285' => 'egr', 'Eucgr.D02456' => 'egr', 'Eucgr.E00018' => 'egr', 'Eucgr.E01439' => 'egr', 'Eucgr.G02859' => 'egr', 'FAN01G0168' => 'fan', 'FAN01G0453' => 'fan', 'FAN01G2761' => 'fan', 'FAN02G1239' => 'fan', 'FAN03G0645' => 'fan', 'FAN03G2707' => 'fan', 'FAN03G2978' => 'fan', 'FAN04G0227' => 'fan', 'FAN06G0091' => 'fan', 'FAN06G1418' => 'fan', 'FAN06G1512' => 'fan', 'FAN06G1986' => 'fan', 'FAN06G2905' => 'fan', 'FAN06G4325' => 'fan', 'FAN08G0033' => 'fan', 'FAN09G0642' => 'fan', 'FAN10G1763' => 'fan', 'FAN10G2026' => 'fan', 'FAN10G2513' => 'fan', 'FAN10G3402' => 'fan', 'FAN10G3564' => 'fan', 'FAN10G3987' => 'fan', 'FAN13G1490' => 'fan', 'FAN14G5857' => 'fan', 'FAN18G1188' => 'fan', 'FvH4_5g00750' => 'fve', 'FvH4_6g13410' => 'fve', 'FvH4_7g11740' => 'fve', 'FvH4_7g17410' => 'fve', 'FvH4_7g18860' => 'fve', 'Glyma.01G099100' => 'gma', 'Glyma.01G142300' => 'gma', 'Glyma.03G025500' => 'gma', 'Glyma.03G069700' => 'gma', 'Glyma.03G260000' => 'gma', 'Glyma.09G269800' => 'gma', 'Glyma.10G208700' => 'gma', 'Glyma.18G220400' => 'gma', 'Glyma.20G182000' => 'gma', 'Gohir.A01G221726' => 'ghi', 'Gohir.A07G134600' => 'ghi', 'Gohir.A07G146000' => 'ghi', 'Gohir.A08G173900' => 'ghi', 'Gohir.A09G194900' => 'ghi', 'Gohir.A10G204100' => 'ghi', 'Gohir.A11G080600' => 'ghi', 'Gohir.A11G327500' => 'ghi', 'Gohir.A12G101800' => 'ghi', 'Gohir.D01G211200' => 'ghi', 'Gohir.D07G139200' => 'ghi', 'Gohir.D07G152100' => 'ghi', 'Gohir.D08G192600' => 'ghi', 'Gohir.D09G189200' => 'ghi', 'Gohir.D10G212000' => 'ghi', 'Gohir.D11G085200' => 'ghi', 'Gohir.D11G346400' => 'ghi', 'Gohir.D12G104800' => 'ghi', 'Gorai.001G151300' => 'gra', 'Gorai.001G174100' => 'gra', 'Gorai.002G257000' => 'gra', 'Gorai.004G202600' => 'gra', 'Gorai.007G090900' => 'gra', 'Gorai.007G376700' => 'gra', 'Gorai.008G114100' => 'gra', 'Gorai.011G237900' => 'gra', 'GSVIVG01005450001' => 'vvi', 'GSVIVG01016232001' => 'vvi', 'GSVIVG01026157001' => 'vvi', 'GSVIVG01027419001' => 'vvi', 'GSVIVG01027631001' => 'vvi', 'GSVIVG01034143001' => 'vvi', 'HanXRQChr03g0093921' => 'han', 'HanXRQChr04g0120001' => 'han', 'HanXRQChr04g0122561' => 'han', 'HanXRQChr09g0246851' => 'han', 'HanXRQChr10g0293311' => 'han', 'HanXRQChr13g0425231' => 'han', 'HanXRQChr16g0532571' => 'han', 'Haze_09050' => 'cav', 'Haze_15715' => 'cav', 'Haze_15716' => 'cav', 'Haze_16803' => 'cav', 'Haze_16850' => 'cav', 'Hma1.2p1_0301F.1_g118655' => 'hma', 'Hma1.2p1_0309F.1_g120590' => 'hma', 'Hma1.2p1_0936F.1_g238900' => 'hma', 'Hma1.2p1_3552F.1_g336740' => 'hma', 'HPP92_003520' => 'vpl', 'HPP92_006628' => 'vpl', 'HPP92_006645' => 'vpl', 'HPP92_014669' => 'vpl', 'HPP92_015077' => 'vpl', 'Hund16742' => 'sun', 'Hund17022' => 'sun', 'Lalb_Chr02g0152131' => 'lal', 'Lalb_Chr05g0225371' => 'lal', 'Lalb_Chr07g0189841' => 'lal', 'Lalb_Chr07g0192961' => 'lal', 'Lalb_Chr12g0208221' => 'lal', 'Lalb_Chr13g0291211' => 'lal', 'Lalb_Chr13g0291781' => 'lal', 'Lalb_Chr18g0044651' => 'lal', 'Lalb_Chr21g0313731' => 'lal', 'Lj1g0022533' => 'lja', 'Lj2A18T50' => 'lonja', 'Lj2A92G93' => 'lonja', 'Lj3A965T73' => 'lonja', 'Lj3g0000673' => 'lja', 'Lj3g0002666' => 'lja', 'Lj4g0016985' => 'lja', 'Lj5g0003625' => 'lja', 'Lj7A529G36' => 'lonja', 'Lj9A569T49' => 'lonja', 'Lj9A604T63' => 'lonja', 'Lsat_1_v5_gn_3_132060' => 'lsa', 'Lsat_1_v5_gn_4_68941' => 'lsa', 'Lsat_1_v5_gn_5_95580' => 'lsa', 'Lsat_1_v5_gn_7_161' => 'lsa', 'Lsat_1_v5_gn_7_7041' => 'lsa', 'Lsat_1_v5_gn_9_33481' => 'lsa', 'Lsat_1_v5_gn_9_68260' => 'lsa', 'Manes.01G073100' => 'mes', 'Manes.01G266300' => 'mes', 'Manes.02G033300' => 'mes', 'Manes.05G017900' => 'mes', 'Manes.05G046100' => 'mes', 'Manes.08G080900' => 'mes', 'Manes.10G049400' => 'mes', 'Mapoly0009s0186' => 'mpo', 'Mapoly0036s0118' => 'mpo', 'Mapoly0101s0046' => 'mpo', 'MBI04_g30218_MAGBIO' => 'mbi', 'MBI04_g35564_MAGBIO' => 'mbi', 'MBI12_g34011_MAGBIO' => 'mbi', 'MBI14_g04655_MAGBIO' => 'mbi', 'MCO07G653' => 'mco', 'MCO10G173' => 'mco', 'MD01G1087100' => 'mdo', 'MD01G1104200' => 'mdo', 'MD02G1205100' => 'mdo', 'MD04G1079200' => 'mdo', 'MD04G1131400' => 'mdo', 'MD07G1121600' => 'mdo', 'MD07G1157300' => 'mdo', 'MD07G1171000' => 'mdo', 'MD12G1144500' => 'mdo', 'Medtr1g094610' => 'mtr', 'Medtr4g021795' => 'mtr', 'Medtr4g023760' => 'mtr', 'Medtr7g118050' => 'mtr', 'MELO3C005582.2' => 'cme', 'MELO3C005989.2' => 'cme', 'MELO3C006192.2' => 'cme', 'MELO3C009248.2' => 'cme', 'MELO3C019817.2' => 'cme', 'Migut.B01625' => 'egut', 'Migut.B01915' => 'egut', 'Migut.F01721' => 'egut', 'Migut.J00314' => 'egut', 'MSTRG.20742' => 'ama', 'MSTRG.8134' => 'ama', 'Nitab4.5_0000096g0010' => 'nta', 'Nitab4.5_0000202g0030' => 'nta', 'Nitab4.5_0000216g0370' => 'nta', 'Nitab4.5_0000457g0230' => 'nta', 'Nitab4.5_0001702g0170' => 'nta', 'Nitab4.5_0003607g0010' => 'nta', 'Nitab4.5_0004917g0020' => 'nta', 'Nitab4.5_0007059g0010' => 'nta', 'Nitab4.5_0007184g0010' => 'nta', 'Nitab4.5_0007346g0020' => 'nta', 'Nn1g00410' => 'nnu', 'Nn1g01252' => 'nnu', 'Nn2g11168' => 'nnu', 'Nn2g13403' => 'nnu', 'Nn2g13760' => 'nnu', 'Nn4g26380' => 'nnu', 'Oeu000806.2' => 'oeu', 'Oeu005788.1' => 'oeu', 'Oeu006900.3' => 'oeu', 'Oeu007797.1' => 'oeu', 'Oeu011932.1' => 'oeu', 'Oeu022739.1' => 'oeu', 'Oeu037918.1' => 'oeu', 'Oeu055490.2' => 'oeu', 'Os01g0844400' => 'osa', 'Os02g0819100' => 'osa', 'Os03g0804300' => 'osa', 'Os05g0458000' => 'osa', 'Os07g0467800' => 'osa', 'Os12g0602200' => 'osa', 'Peaxi162Scf00013g03444' => 'pax', 'Peaxi162Scf00094g01120' => 'pax', 'Peaxi162Scf00191g01211' => 'pax', 'Peaxi162Scf00238g01110' => 'pax', 'Peaxi162Scf00330g00719' => 'pax', 'Peaxi162Scf00627g00018' => 'pax', 'PGR031G2686' => 'pgr', 'PGR042G0809' => 'pgr', 'PGR142G0193' => 'pgr', 'PGSC0003DMG400011066' => 'stu', 'PGSC0003DMG400012041' => 'stu', 'PGSC0003DMG400013678' => 'stu', 'PGSC0003DMG400023477' => 'stu', 'PGSC0003DMG400025956' => 'stu', 'PGSC0003DMG401019151' => 'stu', 'Phvul.006G116400' => 'pvu', 'Phvul.007G097300' => 'pvu', 'Phvul.010G015000' => 'pvu', 'Phvul.010G083900' => 'pvu', 'Potri.001G117100' => 'ptr', 'Potri.002G147300' => 'ptr', 'Potri.003G115600' => 'ptr', 'Potri.006G087400' => 'ptr', 'Potri.010G226100' => 'ptr', 'Potri.014G069200' => 'ptr', 'Potri.014G104000' => 'ptr', 'Potri.016G100200' => 'ptr', 'Pp3c10_20450' => 'ppa', 'Pp3c1_42400' => 'ppa', 'Pp3c3_24390' => 'ppa', 'Pp3c3_2860' => 'ppa', 'PRCOL_00003193' => 'pco', 'Prupe.2G144500' => 'ppe', 'Prupe.2G195700' => 'ppe', 'Prupe.2G209800' => 'ppe', 'Prupe.5G080000' => 'ppe', 'Prupe.6G257900' => 'ppe', 'Psat3g001160' => 'psa', 'Psat6g181880' => 'psa', 'Psat7g233720' => 'psa', 'PSO063G7587' => 'pso', 'PSO339G2145' => 'pso', 'PSO339G3369' => 'pso', 'PSO478G2747' => 'pso', 'PSO513G0140' => 'pso', 'PSO782G1614' => 'pso', 'PSO782G4889' => 'pso', 'PSO782G5485' => 'pso', 'PSO801G0241' => 'pso', 'QL07p048854' => 'qlo', 'QL08p046745' => 'qlo', 'QL08p052606' => 'qlo', 'QL08p053414' => 'qlo', 'QL08p054868' => 'qlo', 'RcHm_v2.0_Chr1g0350251' => 'rch', 'RcHm_v2.0_Chr1g0360851' => 'rch', 'RcHm_v2.0_Chr1g0362791' => 'rch', 'RcHm_v2.0_Chr3g0466281' => 'rch', 'RcHm_v2.0_Chr7g0201481' => 'rch', 'Rhsim01G0148600' => 'rsi', 'Rhsim05G0194400' => 'rsi', 'Rhsim07G0000700' => 'rsi', 'Rhsim07G0000800' => 'rsi', 'Rhsim07G0027900' => 'rsi', 'Rhsim09G0149500' => 'rsi', 'RhsimUnG0186900' => 'rsi', 'Sabra01G0089900' => 'sbr', 'Sabra02G0114700' => 'sbr', 'Sabra02G0116300' => 'sbr', 'Sabra03G0080100' => 'sbr', 'Sabra08G0024300' => 'sbr', 'Sabra10G0174300' => 'sbr', 'Sabra14G0048900' => 'sbr', 'Sabra14G0076500' => 'sbr', 'SalBow5G2513' => 'sbo', 'Sc01g0002300' => 'sci', 'Sc01g0004450' => 'sci', 'Sc06g0001680' => 'sci', 'Sc23g0003580' => 'sci', 'Sed0000913' => 'sed', 'Sed0001655' => 'sed', 'Sed0007745' => 'sed', 'Sed0010951' => 'sed', 'Sed0017599' => 'sed', 'Sed0021405' => 'sed', 'Sed0022810' => 'sed', 'SEGI_07099' => 'sgi', 'SEGI_11931' => 'sgi', 'SEGI_13187' => 'sgi', 'SEGI_29958' => 'sgi', 'SEGI_36351' => 'sgi', 'SGA_v2.0_scaffold126G33770' => 'sas', 'SGA_v2.0_scaffold153G37003' => 'sas', 'SGA_v2.0_scaffold2G01359' => 'sas', 'SGA_v2.0_scaffold5G03064' => 'sas', 'SGA_v2.0_scaffold95G28903' => 'sas', 'SHI12701' => 'shi', 'SHI26410' => 'shi', 'SHI38997' => 'shi', 'SHI53759' => 'shi', 'SHI53886' => 'shi', 'SHI54714' => 'shi', 'SMO011G0041' => 'smo', 'SMO146G0251' => 'smo', 'SMO160G0004' => 'smo', 'SMO174G0057' => 'smo', 'SMO244G0089' => 'smo', 'SMO296G0011' => 'smo', 'Solyc01g091280.3' => 'sly', 'Solyc05g047610.3' => 'sly', 'Solyc05g047640.3' => 'sly', 'Solyc05g055630.3' => 'sly', 'Solyc10g018160.2' => 'sly', 'Solyc10g084820.2' => 'sly', 'Solyc10g086565.2' => 'sly', 'Sopen01g037030' => 'spe', 'Sopen05g027920' => 'spe', 'Sopen05g034070' => 'spe', 'Sopen10g007260' => 'spe', 'Sopen10g034260' => 'spe', 'Sopen10g035950' => 'spe', 'Sp3g07710' => 'spa', 'Sp4g27420' => 'spa', 'Sp5g02450' => 'spa', 'Sp6g01280' => 'spa', 'Sp6g38480' => 'spa', 'Sp7g20780' => 'spa', 'TAR374G1413' => 'tar', 'TAR623G1777' => 'tar', 'TAR629G2370' => 'tar', 'TAR633G1759' => 'tar', 'TAR636G3387' => 'tar', 'THA.LOC104802447' => 'tha', 'THA.LOC104813916' => 'tha', 'THA.LOC104816423' => 'tha', 'THA.LOC104817246' => 'tha', 'THA.LOC104825895' => 'tha', 'Thecc.01G335200' => 'tca', 'Thecc.01G377400' => 'tca', 'Thecc.03G262200' => 'tca', 'Thecc.05G036800' => 'tca', 'Thecc.10G080500' => 'tca', 'Thecc.10G080800' => 'tca', 'Thhalv10001560m.g' => 'esa', 'Thhalv10006120m.g' => 'esa', 'Thhalv10014375m.g' => 'esa', 'Thhalv10021264m.g' => 'esa', 'Thhalv10028856m.g' => 'esa', 'TPR.G1914' => 'tpr', 'TPR.G4757' => 'tpr', 'TPR.G5595' => 'tpr', 'TWI14G0952' => 'twi', 'TWI14G1307' => 'twi', 'TWI38G2143' => 'twi', 'TWI59G0826' => 'twi', 'TWI77G0527' => 'twi', 'TWI81G0150' => 'twi', 'unitig_21.g21018' => 'ugi', 'unitig_26.g9725' => 'ugi', 'unitig_744.g24653' => 'ugi', 'unitig_749.g13778' => 'ugi', 'unitig_899.g15035' => 'ugi', 'vmacro04296' => 'vma', 'vmacro04852' => 'vma', 'vmacro13404' => 'vma', 'vmacro20169' => 'vma', 'vmacro21014' => 'vma', 'VMungo0331G0237' => 'vmu', 'VMungo0331G0706' => 'vmu', 'VMungo0331G1361' => 'vmu', 'VMungo0331G1489' => 'vmu', 'VMungo0540G1037' => 'vmu', 'VMungo0720G2487' => 'vmu', 'VMungo0720G2721' => 'vmu', 'Zm00001eb086860' => 'zma', 'Zm00001eb104760' => 'zma', 'Zm00001eb148220' => 'zma', 'Zm00001eb259030' => 'zma', 'Zm00001eb289590' => 'zma', 'Zm00001eb420150' => 'zma' ) $gf_id = 'HOM05D000968' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000968' ) $data_identifier = 'HOM05D000968' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 19, 'bol' => (int) 9, 'bra' => (int) 12, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 5, 'ccan' => (int) 7, 'cde' => (int) 5, 'cfa' => (int) 8, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 4, 'dca' => (int) 5, 'din' => (int) 5, 'dzi' => (int) 12, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 25, 'fve' => (int) 5, 'gma' => (int) 9, 'ghi' => (int) 18, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 7, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 5, 'sun' => (int) 2, 'lal' => (int) 9, 'lja' => (int) 5, 'lonja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 9, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 2, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 3, 'stu' => (int) 6, 'pvu' => (int) 4, 'ptr' => (int) 8, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 3, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 1, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 5, 'sas' => (int) 5, 'shi' => (int) 6, 'smo' => (int) 6, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 3, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420150' $species_info = array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ) $local_species = 'sas' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000968', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p31690' => 'bna', 'A03p36040' => 'bna', 'A03p53730' => 'bna', 'A04p01410' => 'bna', 'A05p05420' => 'bna', 'A05p39630' => 'bna', 'A05p39640' => 'bna', 'A09p00970' => 'bna', 'A09p53060' => 'bna', 'A10p31890' => 'bna', 'Aa31LG10G15040' => 'aar', 'Aa31LG1G21090' => 'aar', 'Aa31LG1G26900' => 'aar', 'Aa31LG3G1820' => 'aar', 'Aa31LG5G1100' => 'aar', 'Aa31LG6G4740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2265' => 'aag', 'Actinidia07998' => 'ach', 'Actinidia11266' => 'ach', 'Actinidia12682' => 'ach', 'Actinidia26479' => 'ach', 'Actinidia31406' => 'ach', 'Actinidia32437' => 'ach', 'Actinidia38862' => 'ach', 'Ah.05g174230' => 'amhyb', 'Ah.05g179070' => 'amhyb', 'Ah.05g179090' => 'amhyb', 'Ah.12g059950' => 'amhyb', 'AL3G20480' => 'aly', 'AL4G44520' => 'aly', 'AL5G43110' => 'aly', 'AL6G13890' => 'aly', 'AL6G52620' => 'aly', 'AL7G30830' => 'aly', 'Aqoxy1G00899' => 'aox', 'Aqoxy5G04333' => 'aox', 'Aqoxy7G00641' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3IZ0NN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4EF6AW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W9P8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79GA3M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C43NQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFCU6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G95YVJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCHK29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LU1UG8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX91RN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGB4B1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8DA0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9H7JI' => 'arhy', 'AT3G09320' => 'ath', 'AT3G60800' => 'ath', 'AT4G00840' => 'ath', 'AT4G22750' => 'ath', 'AT5G04270' => 'ath', 'ATR0090G003' => 'atr', 'ATR0559G349' => 'atr', 'ATR0680G261' => 'atr', 'ATR0810G048' => 'atr', 'Atru.chr12.831' => 'acertr', 'Atru.chr5.303' => 'acertr', 'Atru.chr5.748' => 'acertr', 'Atru.chr8.1999' => 'acertr', 'Atru.chr9.1436' => 'acertr', 'AUR62004211' => 'cqu', 'AUR62004548' => 'cqu', 'AUR62013637' => 'cqu', 'AUR62022662' => 'cqu', 'AUR62025777' => 'cqu', 'AUR62042386' => 'cqu', 'BcaB01g02310' => 'bca', 'BcaB01g06062' => 'bca', 'BcaB02g08975' => 'bca', 'BcaB02g08980' => 'bca', 'BcaC01g04228' => 'bca', 'BcaC01g06830' => 'bca', 'BcaC02g10186' => 'bca', 'BcaC02g12214' => 'bca', 'BcaC04g24101' => 'bca', 'BcaC05g29520' => 'bca', 'BcaC05g29661' => 'bca', 'BcaC06g32130' => 'bca', 'BcaC06g32131' => 'bca', 'BcaC07g40601' => 'bca', 'BcaC07g42641' => 'bca', 'BcaNung01038' => 'bca', 'BcaNung01676' => 'bca', 'BcaNung02480' => 'bca', 'BcaNung07376' => 'bca', 'BolC3t16146H' => 'bol', 'BolC3t16637H' => 'bol', 'BolC4t22257H' => 'bol', 'BolC4t24728H' => 'bol', 'BolC5t34517H' => 'bol', 'BolC7t45703H' => 'bol', 'BolC8t51166H' => 'bol', 'BolC9t53038H' => 'bol', 'BolC9t60000H' => 'bol', 'BraA01t01345Z' => 'bra', 'BraA01t01346Z' => 'bra', 'BraA01t01348Z' => 'bra', 'BraA03t12347Z' => 'bra', 'BraA03t12775Z' => 'bra', 'BraA03t14439Z' => 'bra', 'BraA04t15860Z' => 'bra', 'BraA05t19511Z' => 'bra', 'BraA05t22746Z' => 'bra', 'BraA09t35767Z' => 'bra', 'BraA09t40732Z' => 'bra', 'BraA10t45233Z' => 'bra', 'C03p38720' => 'bna', 'C03p43680' => 'bna', 'C04p06350' => 'bna', 'C04p31800' => 'bna', 'C05p58680' => 'bna', 'C07p52110' => 'bna', 'C08p35760' => 'bna', 'C09p01050' => 'bna', 'C09p72600' => 'bna', 'CAN.G106.2' => 'can', 'CAN.G1482.1' => 'can', 'CAN.G324.12' => 'can', 'CAN.G388.20' => 'can', 'CAN.G412.7' => 'can', 'CAN.G694.32' => 'can', 'CAN.G92.12' => 'can', 'CANSAT11G2353' => 'cansat', 'CANSAT21G1398' => 'cansat', 'CANSAT56G2456' => 'cansat', 'CANSAT56G3031' => 'cansat', 'CANSAT56G4539' => 'cansat', 'CARHR083680' => 'chi', 'CARHR171190' => 'chi', 'CARHR209010' => 'chi', 'CARHR229680' => 'chi', 'CARHR249490' => 'chi', 'Carub.0003s0844' => 'cru', 'Carub.0005s2755' => 'cru', 'Carub.0006s0322' => 'cru', 'Carub.0006s3586' => 'cru', 'Carub.0007s1855' => 'cru', 'Ca_07808_v3' => 'car', 'Ca_09535_v3' => 'car', 'Ca_10548_v3' => 'car', 'Ca_19913_v3' => 'car', 'Ca_19916_v3' => 'car', 'Ca_19975_v3' => 'car', 'CBR_g22876' => 'cbr', 'CBR_g22879' => 'cbr', 'CBR_g38491' => 'cbr', 'CBR_g54185' => 'cbr', 'CBR_g54190' => 'cbr', 'Cc02_g11020' => 'ccan', 'Cc02_g23920' => 'ccan', 'Cc02_g39860' => 'ccan', 'Cc02_g39870' => 'ccan', 'Cc03_g06760' => 'ccan', 'Cc06_g02450' => 'ccan', 'Cc09_g09450' => 'ccan', 'CDE02G1959' => 'cde', 'CDE04G0600' => 'cde', 'CDE07G1996' => 'cde', 'CDE07G2078' => 'cde', 'CDE11G0611' => 'cde', 'Cfa001683' => 'cfa', 'Cfa001734' => 'cfa', 'Cfa001737' => 'cfa', 'Cfa003751' => 'cfa', 'Cfa012019' => 'cfa', 'Cfa017353' => 'cfa', 'Cfa017732' => 'cfa', 'Cfa022464' => 'cfa', 'Ciclev10012400m.g' => 'ccl', 'Ciclev10021242m.g' => 'ccl', 'Ciclev10021302m.g' => 'ccl', 'Ciclev10021463m.g' => 'ccl', 'Ciclev10032359m.g' => 'ccl', 'CiPaw.01G081000' => 'cil', 'CiPaw.01G262500' => 'cil', 'CiPaw.01G269800' => 'cil', 'CiPaw.02G168400' => 'cil', 'CiPaw.05G119500' => 'cil', 'CiPaw.11G147300' => 'cil', 'ClCG01G003630' => 'cla', 'ClCG05G000510' => 'cla', 'ClCG05G002300' => 'cla', 'ClCG08G007650' => 'cla', 'ClCG10G021250' => 'cla', 'COL.COLO4_06218' => 'col', 'COL.COLO4_12538' => 'col', 'COL.COLO4_14775' => 'col', 'COL.COLO4_23875' => 'col', 'Cpa.g.sc141.16' => 'cpa', 'Cpa.g.sc169.16' => 'cpa', 'Cpa.g.sc244.4' => 'cpa', 'Cpa.g.sc244.5' => 'cpa', 'Cpa.g.sc29.87' => 'cpa', 'Cpa.g.sc53.115' => 'cpa', 'Cre03.g207502' => 'cre', 'Cre06.g277000' => 'cre', 'Cre09.g394050' => 'cre', 'CsaV3_3G007680' => 'csa', 'CsaV3_3G009710' => 'csa', 'CsaV3_3G034790' => 'csa', 'CsaV3_5G003750' => 'csa', 'CsaV3_6G036620' => 'csa', 'CSS0002288' => 'camsi', 'CSS0011250' => 'camsi', 'CSS0021619' => 'camsi', 'CSS0046701' => 'camsi', 'DCAR_006420' => 'dca', 'DCAR_006865' => 'dca', 'DCAR_008558' => 'dca', 'DCAR_028754' => 'dca', 'DCAR_028755' => 'dca', 'Dinv31218' => 'din', 'Dinv32371' => 'din', 'Dinv34250' => 'din', 'Dinv37156' => 'din', 'Dinv43704' => 'din', 'Duzib093G1811' => 'dzi', 'Duzib106G1622' => 'dzi', 'Duzib114G0504' => 'dzi', 'Duzib128G0338' => 'dzi', 'Duzib128G1577' => 'dzi', 'Duzib133G0104' => 'dzi', 'Duzib133G1080' => 'dzi', 'Duzib138G0324' => 'dzi', 'Duzib138G0394' => 'dzi', 'Duzib205G0122' => 'dzi', 'Duzib268G1020' => 'dzi', 'Duzib268G1359' => 'dzi', 'ECA232G3929' => 'eca', 'ECA236G2210' => 'eca', 'ECA236G2287' => 'eca', 'ECA240G4568' => 'eca', 'ECA247G0894' => 'eca', 'EL10Ac1g00200' => 'bvu', 'EL10Ac1g00886' => 'bvu', 'EL10As1g23091' => 'bvu', 'EL10As1g23092' => 'bvu', 'Eucgr.A01284' => 'egr', 'Eucgr.A01285' => 'egr', 'Eucgr.D02456' => 'egr', 'Eucgr.E00018' => 'egr', 'Eucgr.E01439' => 'egr', 'Eucgr.G02859' => 'egr', 'FAN01G0168' => 'fan', 'FAN01G0453' => 'fan', 'FAN01G2761' => 'fan', 'FAN02G1239' => 'fan', 'FAN03G0645' => 'fan', 'FAN03G2707' => 'fan', 'FAN03G2978' => 'fan', 'FAN04G0227' => 'fan', 'FAN06G0091' => 'fan', 'FAN06G1418' => 'fan', 'FAN06G1512' => 'fan', 'FAN06G1986' => 'fan', 'FAN06G2905' => 'fan', 'FAN06G4325' => 'fan', 'FAN08G0033' => 'fan', 'FAN09G0642' => 'fan', 'FAN10G1763' => 'fan', 'FAN10G2026' => 'fan', 'FAN10G2513' => 'fan', 'FAN10G3402' => 'fan', 'FAN10G3564' => 'fan', 'FAN10G3987' => 'fan', 'FAN13G1490' => 'fan', 'FAN14G5857' => 'fan', 'FAN18G1188' => 'fan', 'FvH4_5g00750' => 'fve', 'FvH4_6g13410' => 'fve', 'FvH4_7g11740' => 'fve', 'FvH4_7g17410' => 'fve', 'FvH4_7g18860' => 'fve', 'Glyma.01G099100' => 'gma', 'Glyma.01G142300' => 'gma', 'Glyma.03G025500' => 'gma', 'Glyma.03G069700' => 'gma', 'Glyma.03G260000' => 'gma', 'Glyma.09G269800' => 'gma', 'Glyma.10G208700' => 'gma', 'Glyma.18G220400' => 'gma', 'Glyma.20G182000' => 'gma', 'Gohir.A01G221726' => 'ghi', 'Gohir.A07G134600' => 'ghi', 'Gohir.A07G146000' => 'ghi', 'Gohir.A08G173900' => 'ghi', 'Gohir.A09G194900' => 'ghi', 'Gohir.A10G204100' => 'ghi', 'Gohir.A11G080600' => 'ghi', 'Gohir.A11G327500' => 'ghi', 'Gohir.A12G101800' => 'ghi', 'Gohir.D01G211200' => 'ghi', 'Gohir.D07G139200' => 'ghi', 'Gohir.D07G152100' => 'ghi', 'Gohir.D08G192600' => 'ghi', 'Gohir.D09G189200' => 'ghi', 'Gohir.D10G212000' => 'ghi', 'Gohir.D11G085200' => 'ghi', 'Gohir.D11G346400' => 'ghi', 'Gohir.D12G104800' => 'ghi', 'Gorai.001G151300' => 'gra', 'Gorai.001G174100' => 'gra', 'Gorai.002G257000' => 'gra', 'Gorai.004G202600' => 'gra', 'Gorai.007G090900' => 'gra', 'Gorai.007G376700' => 'gra', 'Gorai.008G114100' => 'gra', 'Gorai.011G237900' => 'gra', 'GSVIVG01005450001' => 'vvi', 'GSVIVG01016232001' => 'vvi', 'GSVIVG01026157001' => 'vvi', 'GSVIVG01027419001' => 'vvi', 'GSVIVG01027631001' => 'vvi', 'GSVIVG01034143001' => 'vvi', 'HanXRQChr03g0093921' => 'han', 'HanXRQChr04g0120001' => 'han', 'HanXRQChr04g0122561' => 'han', 'HanXRQChr09g0246851' => 'han', 'HanXRQChr10g0293311' => 'han', 'HanXRQChr13g0425231' => 'han', 'HanXRQChr16g0532571' => 'han', 'Haze_09050' => 'cav', 'Haze_15715' => 'cav', 'Haze_15716' => 'cav', 'Haze_16803' => 'cav', 'Haze_16850' => 'cav', 'Hma1.2p1_0301F.1_g118655' => 'hma', 'Hma1.2p1_0309F.1_g120590' => 'hma', 'Hma1.2p1_0936F.1_g238900' => 'hma', 'Hma1.2p1_3552F.1_g336740' => 'hma', 'HPP92_003520' => 'vpl', 'HPP92_006628' => 'vpl', 'HPP92_006645' => 'vpl', 'HPP92_014669' => 'vpl', 'HPP92_015077' => 'vpl', 'Hund16742' => 'sun', 'Hund17022' => 'sun', 'Lalb_Chr02g0152131' => 'lal', 'Lalb_Chr05g0225371' => 'lal', 'Lalb_Chr07g0189841' => 'lal', 'Lalb_Chr07g0192961' => 'lal', 'Lalb_Chr12g0208221' => 'lal', 'Lalb_Chr13g0291211' => 'lal', 'Lalb_Chr13g0291781' => 'lal', 'Lalb_Chr18g0044651' => 'lal', 'Lalb_Chr21g0313731' => 'lal', 'Lj1g0022533' => 'lja', 'Lj2A18T50' => 'lonja', 'Lj2A92G93' => 'lonja', 'Lj3A965T73' => 'lonja', 'Lj3g0000673' => 'lja', 'Lj3g0002666' => 'lja', 'Lj4g0016985' => 'lja', 'Lj5g0003625' => 'lja', 'Lj7A529G36' => 'lonja', 'Lj9A569T49' => 'lonja', 'Lj9A604T63' => 'lonja', 'Lsat_1_v5_gn_3_132060' => 'lsa', 'Lsat_1_v5_gn_4_68941' => 'lsa', 'Lsat_1_v5_gn_5_95580' => 'lsa', 'Lsat_1_v5_gn_7_161' => 'lsa', 'Lsat_1_v5_gn_7_7041' => 'lsa', 'Lsat_1_v5_gn_9_33481' => 'lsa', 'Lsat_1_v5_gn_9_68260' => 'lsa', 'Manes.01G073100' => 'mes', 'Manes.01G266300' => 'mes', 'Manes.02G033300' => 'mes', 'Manes.05G017900' => 'mes', 'Manes.05G046100' => 'mes', 'Manes.08G080900' => 'mes', 'Manes.10G049400' => 'mes', 'Mapoly0009s0186' => 'mpo', 'Mapoly0036s0118' => 'mpo', 'Mapoly0101s0046' => 'mpo', 'MBI04_g30218_MAGBIO' => 'mbi', 'MBI04_g35564_MAGBIO' => 'mbi', 'MBI12_g34011_MAGBIO' => 'mbi', 'MBI14_g04655_MAGBIO' => 'mbi', 'MCO07G653' => 'mco', 'MCO10G173' => 'mco', 'MD01G1087100' => 'mdo', 'MD01G1104200' => 'mdo', 'MD02G1205100' => 'mdo', 'MD04G1079200' => 'mdo', 'MD04G1131400' => 'mdo', 'MD07G1121600' => 'mdo', 'MD07G1157300' => 'mdo', 'MD07G1171000' => 'mdo', 'MD12G1144500' => 'mdo', 'Medtr1g094610' => 'mtr', 'Medtr4g021795' => 'mtr', 'Medtr4g023760' => 'mtr', 'Medtr7g118050' => 'mtr', 'MELO3C005582.2' => 'cme', 'MELO3C005989.2' => 'cme', 'MELO3C006192.2' => 'cme', 'MELO3C009248.2' => 'cme', 'MELO3C019817.2' => 'cme', 'Migut.B01625' => 'egut', 'Migut.B01915' => 'egut', 'Migut.F01721' => 'egut', 'Migut.J00314' => 'egut', 'MSTRG.20742' => 'ama', 'MSTRG.8134' => 'ama', 'Nitab4.5_0000096g0010' => 'nta', 'Nitab4.5_0000202g0030' => 'nta', 'Nitab4.5_0000216g0370' => 'nta', 'Nitab4.5_0000457g0230' => 'nta', 'Nitab4.5_0001702g0170' => 'nta', 'Nitab4.5_0003607g0010' => 'nta', 'Nitab4.5_0004917g0020' => 'nta', 'Nitab4.5_0007059g0010' => 'nta', 'Nitab4.5_0007184g0010' => 'nta', 'Nitab4.5_0007346g0020' => 'nta', 'Nn1g00410' => 'nnu', 'Nn1g01252' => 'nnu', 'Nn2g11168' => 'nnu', 'Nn2g13403' => 'nnu', 'Nn2g13760' => 'nnu', 'Nn4g26380' => 'nnu', 'Oeu000806.2' => 'oeu', 'Oeu005788.1' => 'oeu', 'Oeu006900.3' => 'oeu', 'Oeu007797.1' => 'oeu', 'Oeu011932.1' => 'oeu', 'Oeu022739.1' => 'oeu', 'Oeu037918.1' => 'oeu', 'Oeu055490.2' => 'oeu', 'Os01g0844400' => 'osa', 'Os02g0819100' => 'osa', 'Os03g0804300' => 'osa', 'Os05g0458000' => 'osa', 'Os07g0467800' => 'osa', 'Os12g0602200' => 'osa', 'Peaxi162Scf00013g03444' => 'pax', 'Peaxi162Scf00094g01120' => 'pax', 'Peaxi162Scf00191g01211' => 'pax', 'Peaxi162Scf00238g01110' => 'pax', 'Peaxi162Scf00330g00719' => 'pax', 'Peaxi162Scf00627g00018' => 'pax', 'PGR031G2686' => 'pgr', 'PGR042G0809' => 'pgr', 'PGR142G0193' => 'pgr', 'PGSC0003DMG400011066' => 'stu', 'PGSC0003DMG400012041' => 'stu', 'PGSC0003DMG400013678' => 'stu', 'PGSC0003DMG400023477' => 'stu', 'PGSC0003DMG400025956' => 'stu', 'PGSC0003DMG401019151' => 'stu', 'Phvul.006G116400' => 'pvu', 'Phvul.007G097300' => 'pvu', 'Phvul.010G015000' => 'pvu', 'Phvul.010G083900' => 'pvu', 'Potri.001G117100' => 'ptr', 'Potri.002G147300' => 'ptr', 'Potri.003G115600' => 'ptr', 'Potri.006G087400' => 'ptr', 'Potri.010G226100' => 'ptr', 'Potri.014G069200' => 'ptr', 'Potri.014G104000' => 'ptr', 'Potri.016G100200' => 'ptr', 'Pp3c10_20450' => 'ppa', 'Pp3c1_42400' => 'ppa', 'Pp3c3_24390' => 'ppa', 'Pp3c3_2860' => 'ppa', 'PRCOL_00003193' => 'pco', 'Prupe.2G144500' => 'ppe', 'Prupe.2G195700' => 'ppe', 'Prupe.2G209800' => 'ppe', 'Prupe.5G080000' => 'ppe', 'Prupe.6G257900' => 'ppe', 'Psat3g001160' => 'psa', 'Psat6g181880' => 'psa', 'Psat7g233720' => 'psa', 'PSO063G7587' => 'pso', 'PSO339G2145' => 'pso', 'PSO339G3369' => 'pso', 'PSO478G2747' => 'pso', 'PSO513G0140' => 'pso', 'PSO782G1614' => 'pso', 'PSO782G4889' => 'pso', 'PSO782G5485' => 'pso', 'PSO801G0241' => 'pso', 'QL07p048854' => 'qlo', 'QL08p046745' => 'qlo', 'QL08p052606' => 'qlo', 'QL08p053414' => 'qlo', 'QL08p054868' => 'qlo', 'RcHm_v2.0_Chr1g0350251' => 'rch', 'RcHm_v2.0_Chr1g0360851' => 'rch', 'RcHm_v2.0_Chr1g0362791' => 'rch', 'RcHm_v2.0_Chr3g0466281' => 'rch', 'RcHm_v2.0_Chr7g0201481' => 'rch', 'Rhsim01G0148600' => 'rsi', 'Rhsim05G0194400' => 'rsi', 'Rhsim07G0000700' => 'rsi', 'Rhsim07G0000800' => 'rsi', 'Rhsim07G0027900' => 'rsi', 'Rhsim09G0149500' => 'rsi', 'RhsimUnG0186900' => 'rsi', 'Sabra01G0089900' => 'sbr', 'Sabra02G0114700' => 'sbr', 'Sabra02G0116300' => 'sbr', 'Sabra03G0080100' => 'sbr', 'Sabra08G0024300' => 'sbr', 'Sabra10G0174300' => 'sbr', 'Sabra14G0048900' => 'sbr', 'Sabra14G0076500' => 'sbr', 'SalBow5G2513' => 'sbo', 'Sc01g0002300' => 'sci', 'Sc01g0004450' => 'sci', 'Sc06g0001680' => 'sci', 'Sc23g0003580' => 'sci', 'Sed0000913' => 'sed', 'Sed0001655' => 'sed', 'Sed0007745' => 'sed', 'Sed0010951' => 'sed', 'Sed0017599' => 'sed', 'Sed0021405' => 'sed', 'Sed0022810' => 'sed', 'SEGI_07099' => 'sgi', 'SEGI_11931' => 'sgi', 'SEGI_13187' => 'sgi', 'SEGI_29958' => 'sgi', 'SEGI_36351' => 'sgi', 'SGA_v2.0_scaffold126G33770' => 'sas', 'SGA_v2.0_scaffold153G37003' => 'sas', 'SGA_v2.0_scaffold2G01359' => 'sas', 'SGA_v2.0_scaffold5G03064' => 'sas', 'SGA_v2.0_scaffold95G28903' => 'sas', 'SHI12701' => 'shi', 'SHI26410' => 'shi', 'SHI38997' => 'shi', 'SHI53759' => 'shi', 'SHI53886' => 'shi', 'SHI54714' => 'shi', 'SMO011G0041' => 'smo', 'SMO146G0251' => 'smo', 'SMO160G0004' => 'smo', 'SMO174G0057' => 'smo', 'SMO244G0089' => 'smo', 'SMO296G0011' => 'smo', 'Solyc01g091280.3' => 'sly', 'Solyc05g047610.3' => 'sly', 'Solyc05g047640.3' => 'sly', 'Solyc05g055630.3' => 'sly', 'Solyc10g018160.2' => 'sly', 'Solyc10g084820.2' => 'sly', 'Solyc10g086565.2' => 'sly', 'Sopen01g037030' => 'spe', 'Sopen05g027920' => 'spe', 'Sopen05g034070' => 'spe', 'Sopen10g007260' => 'spe', 'Sopen10g034260' => 'spe', 'Sopen10g035950' => 'spe', 'Sp3g07710' => 'spa', 'Sp4g27420' => 'spa', 'Sp5g02450' => 'spa', 'Sp6g01280' => 'spa', 'Sp6g38480' => 'spa', 'Sp7g20780' => 'spa', 'TAR374G1413' => 'tar', 'TAR623G1777' => 'tar', 'TAR629G2370' => 'tar', 'TAR633G1759' => 'tar', 'TAR636G3387' => 'tar', 'THA.LOC104802447' => 'tha', 'THA.LOC104813916' => 'tha', 'THA.LOC104816423' => 'tha', 'THA.LOC104817246' => 'tha', 'THA.LOC104825895' => 'tha', 'Thecc.01G335200' => 'tca', 'Thecc.01G377400' => 'tca', 'Thecc.03G262200' => 'tca', 'Thecc.05G036800' => 'tca', 'Thecc.10G080500' => 'tca', 'Thecc.10G080800' => 'tca', 'Thhalv10001560m.g' => 'esa', 'Thhalv10006120m.g' => 'esa', 'Thhalv10014375m.g' => 'esa', 'Thhalv10021264m.g' => 'esa', 'Thhalv10028856m.g' => 'esa', 'TPR.G1914' => 'tpr', 'TPR.G4757' => 'tpr', 'TPR.G5595' => 'tpr', 'TWI14G0952' => 'twi', 'TWI14G1307' => 'twi', 'TWI38G2143' => 'twi', 'TWI59G0826' => 'twi', 'TWI77G0527' => 'twi', 'TWI81G0150' => 'twi', 'unitig_21.g21018' => 'ugi', 'unitig_26.g9725' => 'ugi', 'unitig_744.g24653' => 'ugi', 'unitig_749.g13778' => 'ugi', 'unitig_899.g15035' => 'ugi', 'vmacro04296' => 'vma', 'vmacro04852' => 'vma', 'vmacro13404' => 'vma', 'vmacro20169' => 'vma', 'vmacro21014' => 'vma', 'VMungo0331G0237' => 'vmu', 'VMungo0331G0706' => 'vmu', 'VMungo0331G1361' => 'vmu', 'VMungo0331G1489' => 'vmu', 'VMungo0540G1037' => 'vmu', 'VMungo0720G2487' => 'vmu', 'VMungo0720G2721' => 'vmu', 'Zm00001eb086860' => 'zma', 'Zm00001eb104760' => 'zma', 'Zm00001eb148220' => 'zma', 'Zm00001eb259030' => 'zma', 'Zm00001eb289590' => 'zma', 'Zm00001eb420150' => 'zma' ), 'gf_id' => 'HOM05D000968', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000968' ), 'data_identifier' => 'HOM05D000968', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000968', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p31690' => 'bna', 'A03p36040' => 'bna', 'A03p53730' => 'bna', 'A04p01410' => 'bna', 'A05p05420' => 'bna', 'A05p39630' => 'bna', 'A05p39640' => 'bna', 'A09p00970' => 'bna', 'A09p53060' => 'bna', 'A10p31890' => 'bna', 'Aa31LG10G15040' => 'aar', 'Aa31LG1G21090' => 'aar', 'Aa31LG1G26900' => 'aar', 'Aa31LG3G1820' => 'aar', 'Aa31LG5G1100' => 'aar', 'Aa31LG6G4740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2265' => 'aag', 'Actinidia07998' => 'ach', 'Actinidia11266' => 'ach', 'Actinidia12682' => 'ach', 'Actinidia26479' => 'ach', 'Actinidia31406' => 'ach', 'Actinidia32437' => 'ach', 'Actinidia38862' => 'ach', 'Ah.05g174230' => 'amhyb', 'Ah.05g179070' => 'amhyb', 'Ah.05g179090' => 'amhyb', 'Ah.12g059950' => 'amhyb', 'AL3G20480' => 'aly', 'AL4G44520' => 'aly', 'AL5G43110' => 'aly', 'AL6G13890' => 'aly', 'AL6G52620' => 'aly', 'AL7G30830' => 'aly', 'Aqoxy1G00899' => 'aox', 'Aqoxy5G04333' => 'aox', 'Aqoxy7G00641' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3IZ0NN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4EF6AW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W9P8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79GA3M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C43NQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFCU6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G95YVJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCHK29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LU1UG8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX91RN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGB4B1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8DA0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9H7JI' => 'arhy', 'AT3G09320' => 'ath', 'AT3G60800' => 'ath', 'AT4G00840' => 'ath', 'AT4G22750' => 'ath', 'AT5G04270' => 'ath', 'ATR0090G003' => 'atr', 'ATR0559G349' => 'atr', 'ATR0680G261' => 'atr', 'ATR0810G048' => 'atr', 'Atru.chr12.831' => 'acertr', 'Atru.chr5.303' => 'acertr', 'Atru.chr5.748' => 'acertr', 'Atru.chr8.1999' => 'acertr', 'Atru.chr9.1436' => 'acertr', 'AUR62004211' => 'cqu', 'AUR62004548' => 'cqu', 'AUR62013637' => 'cqu', 'AUR62022662' => 'cqu', 'AUR62025777' => 'cqu', 'AUR62042386' => 'cqu', 'BcaB01g02310' => 'bca', 'BcaB01g06062' => 'bca', 'BcaB02g08975' => 'bca', 'BcaB02g08980' => 'bca', 'BcaC01g04228' => 'bca', 'BcaC01g06830' => 'bca', 'BcaC02g10186' => 'bca', 'BcaC02g12214' => 'bca', 'BcaC04g24101' => 'bca', 'BcaC05g29520' => 'bca', 'BcaC05g29661' => 'bca', 'BcaC06g32130' => 'bca', 'BcaC06g32131' => 'bca', 'BcaC07g40601' => 'bca', 'BcaC07g42641' => 'bca', 'BcaNung01038' => 'bca', 'BcaNung01676' => 'bca', 'BcaNung02480' => 'bca', 'BcaNung07376' => 'bca', 'BolC3t16146H' => 'bol', 'BolC3t16637H' => 'bol', 'BolC4t22257H' => 'bol', 'BolC4t24728H' => 'bol', 'BolC5t34517H' => 'bol', 'BolC7t45703H' => 'bol', 'BolC8t51166H' => 'bol', 'BolC9t53038H' => 'bol', 'BolC9t60000H' => 'bol', 'BraA01t01345Z' => 'bra', 'BraA01t01346Z' => 'bra', 'BraA01t01348Z' => 'bra', 'BraA03t12347Z' => 'bra', 'BraA03t12775Z' => 'bra', 'BraA03t14439Z' => 'bra', 'BraA04t15860Z' => 'bra', 'BraA05t19511Z' => 'bra', 'BraA05t22746Z' => 'bra', 'BraA09t35767Z' => 'bra', 'BraA09t40732Z' => 'bra', 'BraA10t45233Z' => 'bra', 'C03p38720' => 'bna', 'C03p43680' => 'bna', 'C04p06350' => 'bna', 'C04p31800' => 'bna', 'C05p58680' => 'bna', 'C07p52110' => 'bna', 'C08p35760' => 'bna', 'C09p01050' => 'bna', 'C09p72600' => 'bna', 'CAN.G106.2' => 'can', 'CAN.G1482.1' => 'can', 'CAN.G324.12' => 'can', 'CAN.G388.20' => 'can', 'CAN.G412.7' => 'can', 'CAN.G694.32' => 'can', 'CAN.G92.12' => 'can', 'CANSAT11G2353' => 'cansat', 'CANSAT21G1398' => 'cansat', 'CANSAT56G2456' => 'cansat', 'CANSAT56G3031' => 'cansat', 'CANSAT56G4539' => 'cansat', 'CARHR083680' => 'chi', 'CARHR171190' => 'chi', 'CARHR209010' => 'chi', 'CARHR229680' => 'chi', 'CARHR249490' => 'chi', 'Carub.0003s0844' => 'cru', 'Carub.0005s2755' => 'cru', 'Carub.0006s0322' => 'cru', 'Carub.0006s3586' => 'cru', 'Carub.0007s1855' => 'cru', 'Ca_07808_v3' => 'car', 'Ca_09535_v3' => 'car', 'Ca_10548_v3' => 'car', 'Ca_19913_v3' => 'car', 'Ca_19916_v3' => 'car', 'Ca_19975_v3' => 'car', 'CBR_g22876' => 'cbr', 'CBR_g22879' => 'cbr', 'CBR_g38491' => 'cbr', 'CBR_g54185' => 'cbr', 'CBR_g54190' => 'cbr', 'Cc02_g11020' => 'ccan', 'Cc02_g23920' => 'ccan', 'Cc02_g39860' => 'ccan', 'Cc02_g39870' => 'ccan', 'Cc03_g06760' => 'ccan', 'Cc06_g02450' => 'ccan', 'Cc09_g09450' => 'ccan', 'CDE02G1959' => 'cde', 'CDE04G0600' => 'cde', 'CDE07G1996' => 'cde', 'CDE07G2078' => 'cde', 'CDE11G0611' => 'cde', 'Cfa001683' => 'cfa', 'Cfa001734' => 'cfa', 'Cfa001737' => 'cfa', 'Cfa003751' => 'cfa', 'Cfa012019' => 'cfa', 'Cfa017353' => 'cfa', 'Cfa017732' => 'cfa', 'Cfa022464' => 'cfa', 'Ciclev10012400m.g' => 'ccl', 'Ciclev10021242m.g' => 'ccl', 'Ciclev10021302m.g' => 'ccl', 'Ciclev10021463m.g' => 'ccl', 'Ciclev10032359m.g' => 'ccl', 'CiPaw.01G081000' => 'cil', 'CiPaw.01G262500' => 'cil', 'CiPaw.01G269800' => 'cil', 'CiPaw.02G168400' => 'cil', 'CiPaw.05G119500' => 'cil', 'CiPaw.11G147300' => 'cil', 'ClCG01G003630' => 'cla', 'ClCG05G000510' => 'cla', 'ClCG05G002300' => 'cla', 'ClCG08G007650' => 'cla', 'ClCG10G021250' => 'cla', 'COL.COLO4_06218' => 'col', 'COL.COLO4_12538' => 'col', 'COL.COLO4_14775' => 'col', 'COL.COLO4_23875' => 'col', 'Cpa.g.sc141.16' => 'cpa', 'Cpa.g.sc169.16' => 'cpa', 'Cpa.g.sc244.4' => 'cpa', 'Cpa.g.sc244.5' => 'cpa', 'Cpa.g.sc29.87' => 'cpa', 'Cpa.g.sc53.115' => 'cpa', 'Cre03.g207502' => 'cre', 'Cre06.g277000' => 'cre', 'Cre09.g394050' => 'cre', 'CsaV3_3G007680' => 'csa', 'CsaV3_3G009710' => 'csa', 'CsaV3_3G034790' => 'csa', 'CsaV3_5G003750' => 'csa', 'CsaV3_6G036620' => 'csa', 'CSS0002288' => 'camsi', 'CSS0011250' => 'camsi', 'CSS0021619' => 'camsi', 'CSS0046701' => 'camsi', 'DCAR_006420' => 'dca', 'DCAR_006865' => 'dca', 'DCAR_008558' => 'dca', 'DCAR_028754' => 'dca', 'DCAR_028755' => 'dca', 'Dinv31218' => 'din', 'Dinv32371' => 'din', 'Dinv34250' => 'din', 'Dinv37156' => 'din', 'Dinv43704' => 'din', 'Duzib093G1811' => 'dzi', 'Duzib106G1622' => 'dzi', 'Duzib114G0504' => 'dzi', 'Duzib128G0338' => 'dzi', 'Duzib128G1577' => 'dzi', 'Duzib133G0104' => 'dzi', 'Duzib133G1080' => 'dzi', 'Duzib138G0324' => 'dzi', 'Duzib138G0394' => 'dzi', 'Duzib205G0122' => 'dzi', 'Duzib268G1020' => 'dzi', 'Duzib268G1359' => 'dzi', 'ECA232G3929' => 'eca', 'ECA236G2210' => 'eca', 'ECA236G2287' => 'eca', 'ECA240G4568' => 'eca', 'ECA247G0894' => 'eca', 'EL10Ac1g00200' => 'bvu', 'EL10Ac1g00886' => 'bvu', 'EL10As1g23091' => 'bvu', 'EL10As1g23092' => 'bvu', 'Eucgr.A01284' => 'egr', 'Eucgr.A01285' => 'egr', 'Eucgr.D02456' => 'egr', 'Eucgr.E00018' => 'egr', 'Eucgr.E01439' => 'egr', 'Eucgr.G02859' => 'egr', 'FAN01G0168' => 'fan', 'FAN01G0453' => 'fan', 'FAN01G2761' => 'fan', 'FAN02G1239' => 'fan', 'FAN03G0645' => 'fan', 'FAN03G2707' => 'fan', 'FAN03G2978' => 'fan', 'FAN04G0227' => 'fan', 'FAN06G0091' => 'fan', 'FAN06G1418' => 'fan', 'FAN06G1512' => 'fan', 'FAN06G1986' => 'fan', 'FAN06G2905' => 'fan', 'FAN06G4325' => 'fan', 'FAN08G0033' => 'fan', 'FAN09G0642' => 'fan', 'FAN10G1763' => 'fan', 'FAN10G2026' => 'fan', 'FAN10G2513' => 'fan', 'FAN10G3402' => 'fan', 'FAN10G3564' => 'fan', 'FAN10G3987' => 'fan', 'FAN13G1490' => 'fan', 'FAN14G5857' => 'fan', 'FAN18G1188' => 'fan', 'FvH4_5g00750' => 'fve', 'FvH4_6g13410' => 'fve', 'FvH4_7g11740' => 'fve', 'FvH4_7g17410' => 'fve', 'FvH4_7g18860' => 'fve', 'Glyma.01G099100' => 'gma', 'Glyma.01G142300' => 'gma', 'Glyma.03G025500' => 'gma', 'Glyma.03G069700' => 'gma', 'Glyma.03G260000' => 'gma', 'Glyma.09G269800' => 'gma', 'Glyma.10G208700' => 'gma', 'Glyma.18G220400' => 'gma', 'Glyma.20G182000' => 'gma', 'Gohir.A01G221726' => 'ghi', 'Gohir.A07G134600' => 'ghi', 'Gohir.A07G146000' => 'ghi', 'Gohir.A08G173900' => 'ghi', 'Gohir.A09G194900' => 'ghi', 'Gohir.A10G204100' => 'ghi', 'Gohir.A11G080600' => 'ghi', 'Gohir.A11G327500' => 'ghi', 'Gohir.A12G101800' => 'ghi', 'Gohir.D01G211200' => 'ghi', 'Gohir.D07G139200' => 'ghi', 'Gohir.D07G152100' => 'ghi', 'Gohir.D08G192600' => 'ghi', 'Gohir.D09G189200' => 'ghi', 'Gohir.D10G212000' => 'ghi', 'Gohir.D11G085200' => 'ghi', 'Gohir.D11G346400' => 'ghi', 'Gohir.D12G104800' => 'ghi', 'Gorai.001G151300' => 'gra', 'Gorai.001G174100' => 'gra', 'Gorai.002G257000' => 'gra', 'Gorai.004G202600' => 'gra', 'Gorai.007G090900' => 'gra', 'Gorai.007G376700' => 'gra', 'Gorai.008G114100' => 'gra', 'Gorai.011G237900' => 'gra', 'GSVIVG01005450001' => 'vvi', 'GSVIVG01016232001' => 'vvi', 'GSVIVG01026157001' => 'vvi', 'GSVIVG01027419001' => 'vvi', 'GSVIVG01027631001' => 'vvi', 'GSVIVG01034143001' => 'vvi', 'HanXRQChr03g0093921' => 'han', 'HanXRQChr04g0120001' => 'han', 'HanXRQChr04g0122561' => 'han', 'HanXRQChr09g0246851' => 'han', 'HanXRQChr10g0293311' => 'han', 'HanXRQChr13g0425231' => 'han', 'HanXRQChr16g0532571' => 'han', 'Haze_09050' => 'cav', 'Haze_15715' => 'cav', 'Haze_15716' => 'cav', 'Haze_16803' => 'cav', 'Haze_16850' => 'cav', 'Hma1.2p1_0301F.1_g118655' => 'hma', 'Hma1.2p1_0309F.1_g120590' => 'hma', 'Hma1.2p1_0936F.1_g238900' => 'hma', 'Hma1.2p1_3552F.1_g336740' => 'hma', 'HPP92_003520' => 'vpl', 'HPP92_006628' => 'vpl', 'HPP92_006645' => 'vpl', 'HPP92_014669' => 'vpl', 'HPP92_015077' => 'vpl', 'Hund16742' => 'sun', 'Hund17022' => 'sun', 'Lalb_Chr02g0152131' => 'lal', 'Lalb_Chr05g0225371' => 'lal', 'Lalb_Chr07g0189841' => 'lal', 'Lalb_Chr07g0192961' => 'lal', 'Lalb_Chr12g0208221' => 'lal', 'Lalb_Chr13g0291211' => 'lal', 'Lalb_Chr13g0291781' => 'lal', 'Lalb_Chr18g0044651' => 'lal', 'Lalb_Chr21g0313731' => 'lal', 'Lj1g0022533' => 'lja', 'Lj2A18T50' => 'lonja', 'Lj2A92G93' => 'lonja', 'Lj3A965T73' => 'lonja', 'Lj3g0000673' => 'lja', 'Lj3g0002666' => 'lja', 'Lj4g0016985' => 'lja', 'Lj5g0003625' => 'lja', 'Lj7A529G36' => 'lonja', 'Lj9A569T49' => 'lonja', 'Lj9A604T63' => 'lonja', 'Lsat_1_v5_gn_3_132060' => 'lsa', 'Lsat_1_v5_gn_4_68941' => 'lsa', 'Lsat_1_v5_gn_5_95580' => 'lsa', 'Lsat_1_v5_gn_7_161' => 'lsa', 'Lsat_1_v5_gn_7_7041' => 'lsa', 'Lsat_1_v5_gn_9_33481' => 'lsa', 'Lsat_1_v5_gn_9_68260' => 'lsa', 'Manes.01G073100' => 'mes', 'Manes.01G266300' => 'mes', 'Manes.02G033300' => 'mes', 'Manes.05G017900' => 'mes', 'Manes.05G046100' => 'mes', 'Manes.08G080900' => 'mes', 'Manes.10G049400' => 'mes', 'Mapoly0009s0186' => 'mpo', 'Mapoly0036s0118' => 'mpo', 'Mapoly0101s0046' => 'mpo', 'MBI04_g30218_MAGBIO' => 'mbi', 'MBI04_g35564_MAGBIO' => 'mbi', 'MBI12_g34011_MAGBIO' => 'mbi', 'MBI14_g04655_MAGBIO' => 'mbi', 'MCO07G653' => 'mco', 'MCO10G173' => 'mco', 'MD01G1087100' => 'mdo', 'MD01G1104200' => 'mdo', 'MD02G1205100' => 'mdo', 'MD04G1079200' => 'mdo', 'MD04G1131400' => 'mdo', 'MD07G1121600' => 'mdo', 'MD07G1157300' => 'mdo', 'MD07G1171000' => 'mdo', 'MD12G1144500' => 'mdo', 'Medtr1g094610' => 'mtr', 'Medtr4g021795' => 'mtr', 'Medtr4g023760' => 'mtr', 'Medtr7g118050' => 'mtr', 'MELO3C005582.2' => 'cme', 'MELO3C005989.2' => 'cme', 'MELO3C006192.2' => 'cme', 'MELO3C009248.2' => 'cme', 'MELO3C019817.2' => 'cme', 'Migut.B01625' => 'egut', 'Migut.B01915' => 'egut', 'Migut.F01721' => 'egut', 'Migut.J00314' => 'egut', 'MSTRG.20742' => 'ama', 'MSTRG.8134' => 'ama', 'Nitab4.5_0000096g0010' => 'nta', 'Nitab4.5_0000202g0030' => 'nta', 'Nitab4.5_0000216g0370' => 'nta', 'Nitab4.5_0000457g0230' => 'nta', 'Nitab4.5_0001702g0170' => 'nta', 'Nitab4.5_0003607g0010' => 'nta', 'Nitab4.5_0004917g0020' => 'nta', 'Nitab4.5_0007059g0010' => 'nta', 'Nitab4.5_0007184g0010' => 'nta', 'Nitab4.5_0007346g0020' => 'nta', 'Nn1g00410' => 'nnu', 'Nn1g01252' => 'nnu', 'Nn2g11168' => 'nnu', 'Nn2g13403' => 'nnu', 'Nn2g13760' => 'nnu', 'Nn4g26380' => 'nnu', 'Oeu000806.2' => 'oeu', 'Oeu005788.1' => 'oeu', 'Oeu006900.3' => 'oeu', 'Oeu007797.1' => 'oeu', 'Oeu011932.1' => 'oeu', 'Oeu022739.1' => 'oeu', 'Oeu037918.1' => 'oeu', 'Oeu055490.2' => 'oeu', 'Os01g0844400' => 'osa', 'Os02g0819100' => 'osa', 'Os03g0804300' => 'osa', 'Os05g0458000' => 'osa', 'Os07g0467800' => 'osa', 'Os12g0602200' => 'osa', 'Peaxi162Scf00013g03444' => 'pax', 'Peaxi162Scf00094g01120' => 'pax', 'Peaxi162Scf00191g01211' => 'pax', 'Peaxi162Scf00238g01110' => 'pax', 'Peaxi162Scf00330g00719' => 'pax', 'Peaxi162Scf00627g00018' => 'pax', 'PGR031G2686' => 'pgr', 'PGR042G0809' => 'pgr', 'PGR142G0193' => 'pgr', 'PGSC0003DMG400011066' => 'stu', 'PGSC0003DMG400012041' => 'stu', 'PGSC0003DMG400013678' => 'stu', 'PGSC0003DMG400023477' => 'stu', 'PGSC0003DMG400025956' => 'stu', 'PGSC0003DMG401019151' => 'stu', 'Phvul.006G116400' => 'pvu', 'Phvul.007G097300' => 'pvu', 'Phvul.010G015000' => 'pvu', 'Phvul.010G083900' => 'pvu', 'Potri.001G117100' => 'ptr', 'Potri.002G147300' => 'ptr', 'Potri.003G115600' => 'ptr', 'Potri.006G087400' => 'ptr', 'Potri.010G226100' => 'ptr', 'Potri.014G069200' => 'ptr', 'Potri.014G104000' => 'ptr', 'Potri.016G100200' => 'ptr', 'Pp3c10_20450' => 'ppa', 'Pp3c1_42400' => 'ppa', 'Pp3c3_24390' => 'ppa', 'Pp3c3_2860' => 'ppa', 'PRCOL_00003193' => 'pco', 'Prupe.2G144500' => 'ppe', 'Prupe.2G195700' => 'ppe', 'Prupe.2G209800' => 'ppe', 'Prupe.5G080000' => 'ppe', 'Prupe.6G257900' => 'ppe', 'Psat3g001160' => 'psa', 'Psat6g181880' => 'psa', 'Psat7g233720' => 'psa', 'PSO063G7587' => 'pso', 'PSO339G2145' => 'pso', 'PSO339G3369' => 'pso', 'PSO478G2747' => 'pso', 'PSO513G0140' => 'pso', 'PSO782G1614' => 'pso', 'PSO782G4889' => 'pso', 'PSO782G5485' => 'pso', 'PSO801G0241' => 'pso', 'QL07p048854' => 'qlo', 'QL08p046745' => 'qlo', 'QL08p052606' => 'qlo', 'QL08p053414' => 'qlo', 'QL08p054868' => 'qlo', 'RcHm_v2.0_Chr1g0350251' => 'rch', 'RcHm_v2.0_Chr1g0360851' => 'rch', 'RcHm_v2.0_Chr1g0362791' => 'rch', 'RcHm_v2.0_Chr3g0466281' => 'rch', 'RcHm_v2.0_Chr7g0201481' => 'rch', 'Rhsim01G0148600' => 'rsi', 'Rhsim05G0194400' => 'rsi', 'Rhsim07G0000700' => 'rsi', 'Rhsim07G0000800' => 'rsi', 'Rhsim07G0027900' => 'rsi', 'Rhsim09G0149500' => 'rsi', 'RhsimUnG0186900' => 'rsi', 'Sabra01G0089900' => 'sbr', 'Sabra02G0114700' => 'sbr', 'Sabra02G0116300' => 'sbr', 'Sabra03G0080100' => 'sbr', 'Sabra08G0024300' => 'sbr', 'Sabra10G0174300' => 'sbr', 'Sabra14G0048900' => 'sbr', 'Sabra14G0076500' => 'sbr', 'SalBow5G2513' => 'sbo', 'Sc01g0002300' => 'sci', 'Sc01g0004450' => 'sci', 'Sc06g0001680' => 'sci', 'Sc23g0003580' => 'sci', 'Sed0000913' => 'sed', 'Sed0001655' => 'sed', 'Sed0007745' => 'sed', 'Sed0010951' => 'sed', 'Sed0017599' => 'sed', 'Sed0021405' => 'sed', 'Sed0022810' => 'sed', 'SEGI_07099' => 'sgi', 'SEGI_11931' => 'sgi', 'SEGI_13187' => 'sgi', 'SEGI_29958' => 'sgi', 'SEGI_36351' => 'sgi', 'SGA_v2.0_scaffold126G33770' => 'sas', 'SGA_v2.0_scaffold153G37003' => 'sas', 'SGA_v2.0_scaffold2G01359' => 'sas', 'SGA_v2.0_scaffold5G03064' => 'sas', 'SGA_v2.0_scaffold95G28903' => 'sas', 'SHI12701' => 'shi', 'SHI26410' => 'shi', 'SHI38997' => 'shi', 'SHI53759' => 'shi', 'SHI53886' => 'shi', 'SHI54714' => 'shi', 'SMO011G0041' => 'smo', 'SMO146G0251' => 'smo', 'SMO160G0004' => 'smo', 'SMO174G0057' => 'smo', 'SMO244G0089' => 'smo', 'SMO296G0011' => 'smo', 'Solyc01g091280.3' => 'sly', 'Solyc05g047610.3' => 'sly', 'Solyc05g047640.3' => 'sly', 'Solyc05g055630.3' => 'sly', 'Solyc10g018160.2' => 'sly', 'Solyc10g084820.2' => 'sly', 'Solyc10g086565.2' => 'sly', 'Sopen01g037030' => 'spe', 'Sopen05g027920' => 'spe', 'Sopen05g034070' => 'spe', 'Sopen10g007260' => 'spe', 'Sopen10g034260' => 'spe', 'Sopen10g035950' => 'spe', 'Sp3g07710' => 'spa', 'Sp4g27420' => 'spa', 'Sp5g02450' => 'spa', 'Sp6g01280' => 'spa', 'Sp6g38480' => 'spa', 'Sp7g20780' => 'spa', 'TAR374G1413' => 'tar', 'TAR623G1777' => 'tar', 'TAR629G2370' => 'tar', 'TAR633G1759' => 'tar', 'TAR636G3387' => 'tar', 'THA.LOC104802447' => 'tha', 'THA.LOC104813916' => 'tha', 'THA.LOC104816423' => 'tha', 'THA.LOC104817246' => 'tha', 'THA.LOC104825895' => 'tha', 'Thecc.01G335200' => 'tca', 'Thecc.01G377400' => 'tca', 'Thecc.03G262200' => 'tca', 'Thecc.05G036800' => 'tca', 'Thecc.10G080500' => 'tca', 'Thecc.10G080800' => 'tca', 'Thhalv10001560m.g' => 'esa', 'Thhalv10006120m.g' => 'esa', 'Thhalv10014375m.g' => 'esa', 'Thhalv10021264m.g' => 'esa', 'Thhalv10028856m.g' => 'esa', 'TPR.G1914' => 'tpr', 'TPR.G4757' => 'tpr', 'TPR.G5595' => 'tpr', 'TWI14G0952' => 'twi', 'TWI14G1307' => 'twi', 'TWI38G2143' => 'twi', 'TWI59G0826' => 'twi', 'TWI77G0527' => 'twi', 'TWI81G0150' => 'twi', 'unitig_21.g21018' => 'ugi', 'unitig_26.g9725' => 'ugi', 'unitig_744.g24653' => 'ugi', 'unitig_749.g13778' => 'ugi', 'unitig_899.g15035' => 'ugi', 'vmacro04296' => 'vma', 'vmacro04852' => 'vma', 'vmacro13404' => 'vma', 'vmacro20169' => 'vma', 'vmacro21014' => 'vma', 'VMungo0331G0237' => 'vmu', 'VMungo0331G0706' => 'vmu', 'VMungo0331G1361' => 'vmu', 'VMungo0331G1489' => 'vmu', 'VMungo0540G1037' => 'vmu', 'VMungo0720G2487' => 'vmu', 'VMungo0720G2721' => 'vmu', 'Zm00001eb086860' => 'zma', 'Zm00001eb104760' => 'zma', 'Zm00001eb148220' => 'zma', 'Zm00001eb259030' => 'zma', 'Zm00001eb289590' => 'zma', 'Zm00001eb420150' => 'zma' ) $gf_id = 'HOM05D000968' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000968' ) $data_identifier = 'HOM05D000968' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 19, 'bol' => (int) 9, 'bra' => (int) 12, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 5, 'ccan' => (int) 7, 'cde' => (int) 5, 'cfa' => (int) 8, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 4, 'dca' => (int) 5, 'din' => (int) 5, 'dzi' => (int) 12, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 25, 'fve' => (int) 5, 'gma' => (int) 9, 'ghi' => (int) 18, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 7, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 5, 'sun' => (int) 2, 'lal' => (int) 9, 'lja' => (int) 5, 'lonja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 9, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 2, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 3, 'stu' => (int) 6, 'pvu' => (int) 4, 'ptr' => (int) 8, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 3, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 1, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 5, 'sas' => (int) 5, 'shi' => (int) 6, 'smo' => (int) 6, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 3, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420150' $species_info = array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ) $local_species = 'sas' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000968', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p31690' => 'bna', 'A03p36040' => 'bna', 'A03p53730' => 'bna', 'A04p01410' => 'bna', 'A05p05420' => 'bna', 'A05p39630' => 'bna', 'A05p39640' => 'bna', 'A09p00970' => 'bna', 'A09p53060' => 'bna', 'A10p31890' => 'bna', 'Aa31LG10G15040' => 'aar', 'Aa31LG1G21090' => 'aar', 'Aa31LG1G26900' => 'aar', 'Aa31LG3G1820' => 'aar', 'Aa31LG5G1100' => 'aar', 'Aa31LG6G4740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2265' => 'aag', 'Actinidia07998' => 'ach', 'Actinidia11266' => 'ach', 'Actinidia12682' => 'ach', 'Actinidia26479' => 'ach', 'Actinidia31406' => 'ach', 'Actinidia32437' => 'ach', 'Actinidia38862' => 'ach', 'Ah.05g174230' => 'amhyb', 'Ah.05g179070' => 'amhyb', 'Ah.05g179090' => 'amhyb', 'Ah.12g059950' => 'amhyb', 'AL3G20480' => 'aly', 'AL4G44520' => 'aly', 'AL5G43110' => 'aly', 'AL6G13890' => 'aly', 'AL6G52620' => 'aly', 'AL7G30830' => 'aly', 'Aqoxy1G00899' => 'aox', 'Aqoxy5G04333' => 'aox', 'Aqoxy7G00641' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3IZ0NN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4EF6AW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W9P8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79GA3M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C43NQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFCU6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G95YVJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCHK29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LU1UG8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX91RN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGB4B1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8DA0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9H7JI' => 'arhy', 'AT3G09320' => 'ath', 'AT3G60800' => 'ath', 'AT4G00840' => 'ath', 'AT4G22750' => 'ath', 'AT5G04270' => 'ath', 'ATR0090G003' => 'atr', 'ATR0559G349' => 'atr', 'ATR0680G261' => 'atr', 'ATR0810G048' => 'atr', 'Atru.chr12.831' => 'acertr', 'Atru.chr5.303' => 'acertr', 'Atru.chr5.748' => 'acertr', 'Atru.chr8.1999' => 'acertr', 'Atru.chr9.1436' => 'acertr', 'AUR62004211' => 'cqu', 'AUR62004548' => 'cqu', 'AUR62013637' => 'cqu', 'AUR62022662' => 'cqu', 'AUR62025777' => 'cqu', 'AUR62042386' => 'cqu', 'BcaB01g02310' => 'bca', 'BcaB01g06062' => 'bca', 'BcaB02g08975' => 'bca', 'BcaB02g08980' => 'bca', 'BcaC01g04228' => 'bca', 'BcaC01g06830' => 'bca', 'BcaC02g10186' => 'bca', 'BcaC02g12214' => 'bca', 'BcaC04g24101' => 'bca', 'BcaC05g29520' => 'bca', 'BcaC05g29661' => 'bca', 'BcaC06g32130' => 'bca', 'BcaC06g32131' => 'bca', 'BcaC07g40601' => 'bca', 'BcaC07g42641' => 'bca', 'BcaNung01038' => 'bca', 'BcaNung01676' => 'bca', 'BcaNung02480' => 'bca', 'BcaNung07376' => 'bca', 'BolC3t16146H' => 'bol', 'BolC3t16637H' => 'bol', 'BolC4t22257H' => 'bol', 'BolC4t24728H' => 'bol', 'BolC5t34517H' => 'bol', 'BolC7t45703H' => 'bol', 'BolC8t51166H' => 'bol', 'BolC9t53038H' => 'bol', 'BolC9t60000H' => 'bol', 'BraA01t01345Z' => 'bra', 'BraA01t01346Z' => 'bra', 'BraA01t01348Z' => 'bra', 'BraA03t12347Z' => 'bra', 'BraA03t12775Z' => 'bra', 'BraA03t14439Z' => 'bra', 'BraA04t15860Z' => 'bra', 'BraA05t19511Z' => 'bra', 'BraA05t22746Z' => 'bra', 'BraA09t35767Z' => 'bra', 'BraA09t40732Z' => 'bra', 'BraA10t45233Z' => 'bra', 'C03p38720' => 'bna', 'C03p43680' => 'bna', 'C04p06350' => 'bna', 'C04p31800' => 'bna', 'C05p58680' => 'bna', 'C07p52110' => 'bna', 'C08p35760' => 'bna', 'C09p01050' => 'bna', 'C09p72600' => 'bna', 'CAN.G106.2' => 'can', 'CAN.G1482.1' => 'can', 'CAN.G324.12' => 'can', 'CAN.G388.20' => 'can', 'CAN.G412.7' => 'can', 'CAN.G694.32' => 'can', 'CAN.G92.12' => 'can', 'CANSAT11G2353' => 'cansat', 'CANSAT21G1398' => 'cansat', 'CANSAT56G2456' => 'cansat', 'CANSAT56G3031' => 'cansat', 'CANSAT56G4539' => 'cansat', 'CARHR083680' => 'chi', 'CARHR171190' => 'chi', 'CARHR209010' => 'chi', 'CARHR229680' => 'chi', 'CARHR249490' => 'chi', 'Carub.0003s0844' => 'cru', 'Carub.0005s2755' => 'cru', 'Carub.0006s0322' => 'cru', 'Carub.0006s3586' => 'cru', 'Carub.0007s1855' => 'cru', 'Ca_07808_v3' => 'car', 'Ca_09535_v3' => 'car', 'Ca_10548_v3' => 'car', 'Ca_19913_v3' => 'car', 'Ca_19916_v3' => 'car', 'Ca_19975_v3' => 'car', 'CBR_g22876' => 'cbr', 'CBR_g22879' => 'cbr', 'CBR_g38491' => 'cbr', 'CBR_g54185' => 'cbr', 'CBR_g54190' => 'cbr', 'Cc02_g11020' => 'ccan', 'Cc02_g23920' => 'ccan', 'Cc02_g39860' => 'ccan', 'Cc02_g39870' => 'ccan', 'Cc03_g06760' => 'ccan', 'Cc06_g02450' => 'ccan', 'Cc09_g09450' => 'ccan', 'CDE02G1959' => 'cde', 'CDE04G0600' => 'cde', 'CDE07G1996' => 'cde', 'CDE07G2078' => 'cde', 'CDE11G0611' => 'cde', 'Cfa001683' => 'cfa', 'Cfa001734' => 'cfa', 'Cfa001737' => 'cfa', 'Cfa003751' => 'cfa', 'Cfa012019' => 'cfa', 'Cfa017353' => 'cfa', 'Cfa017732' => 'cfa', 'Cfa022464' => 'cfa', 'Ciclev10012400m.g' => 'ccl', 'Ciclev10021242m.g' => 'ccl', 'Ciclev10021302m.g' => 'ccl', 'Ciclev10021463m.g' => 'ccl', 'Ciclev10032359m.g' => 'ccl', 'CiPaw.01G081000' => 'cil', 'CiPaw.01G262500' => 'cil', 'CiPaw.01G269800' => 'cil', 'CiPaw.02G168400' => 'cil', 'CiPaw.05G119500' => 'cil', 'CiPaw.11G147300' => 'cil', 'ClCG01G003630' => 'cla', 'ClCG05G000510' => 'cla', 'ClCG05G002300' => 'cla', 'ClCG08G007650' => 'cla', 'ClCG10G021250' => 'cla', 'COL.COLO4_06218' => 'col', 'COL.COLO4_12538' => 'col', 'COL.COLO4_14775' => 'col', 'COL.COLO4_23875' => 'col', 'Cpa.g.sc141.16' => 'cpa', 'Cpa.g.sc169.16' => 'cpa', 'Cpa.g.sc244.4' => 'cpa', 'Cpa.g.sc244.5' => 'cpa', 'Cpa.g.sc29.87' => 'cpa', 'Cpa.g.sc53.115' => 'cpa', 'Cre03.g207502' => 'cre', 'Cre06.g277000' => 'cre', 'Cre09.g394050' => 'cre', 'CsaV3_3G007680' => 'csa', 'CsaV3_3G009710' => 'csa', 'CsaV3_3G034790' => 'csa', 'CsaV3_5G003750' => 'csa', 'CsaV3_6G036620' => 'csa', 'CSS0002288' => 'camsi', 'CSS0011250' => 'camsi', 'CSS0021619' => 'camsi', 'CSS0046701' => 'camsi', 'DCAR_006420' => 'dca', 'DCAR_006865' => 'dca', 'DCAR_008558' => 'dca', 'DCAR_028754' => 'dca', 'DCAR_028755' => 'dca', 'Dinv31218' => 'din', 'Dinv32371' => 'din', 'Dinv34250' => 'din', 'Dinv37156' => 'din', 'Dinv43704' => 'din', 'Duzib093G1811' => 'dzi', 'Duzib106G1622' => 'dzi', 'Duzib114G0504' => 'dzi', 'Duzib128G0338' => 'dzi', 'Duzib128G1577' => 'dzi', 'Duzib133G0104' => 'dzi', 'Duzib133G1080' => 'dzi', 'Duzib138G0324' => 'dzi', 'Duzib138G0394' => 'dzi', 'Duzib205G0122' => 'dzi', 'Duzib268G1020' => 'dzi', 'Duzib268G1359' => 'dzi', 'ECA232G3929' => 'eca', 'ECA236G2210' => 'eca', 'ECA236G2287' => 'eca', 'ECA240G4568' => 'eca', 'ECA247G0894' => 'eca', 'EL10Ac1g00200' => 'bvu', 'EL10Ac1g00886' => 'bvu', 'EL10As1g23091' => 'bvu', 'EL10As1g23092' => 'bvu', 'Eucgr.A01284' => 'egr', 'Eucgr.A01285' => 'egr', 'Eucgr.D02456' => 'egr', 'Eucgr.E00018' => 'egr', 'Eucgr.E01439' => 'egr', 'Eucgr.G02859' => 'egr', 'FAN01G0168' => 'fan', 'FAN01G0453' => 'fan', 'FAN01G2761' => 'fan', 'FAN02G1239' => 'fan', 'FAN03G0645' => 'fan', 'FAN03G2707' => 'fan', 'FAN03G2978' => 'fan', 'FAN04G0227' => 'fan', 'FAN06G0091' => 'fan', 'FAN06G1418' => 'fan', 'FAN06G1512' => 'fan', 'FAN06G1986' => 'fan', 'FAN06G2905' => 'fan', 'FAN06G4325' => 'fan', 'FAN08G0033' => 'fan', 'FAN09G0642' => 'fan', 'FAN10G1763' => 'fan', 'FAN10G2026' => 'fan', 'FAN10G2513' => 'fan', 'FAN10G3402' => 'fan', 'FAN10G3564' => 'fan', 'FAN10G3987' => 'fan', 'FAN13G1490' => 'fan', 'FAN14G5857' => 'fan', 'FAN18G1188' => 'fan', 'FvH4_5g00750' => 'fve', 'FvH4_6g13410' => 'fve', 'FvH4_7g11740' => 'fve', 'FvH4_7g17410' => 'fve', 'FvH4_7g18860' => 'fve', 'Glyma.01G099100' => 'gma', 'Glyma.01G142300' => 'gma', 'Glyma.03G025500' => 'gma', 'Glyma.03G069700' => 'gma', 'Glyma.03G260000' => 'gma', 'Glyma.09G269800' => 'gma', 'Glyma.10G208700' => 'gma', 'Glyma.18G220400' => 'gma', 'Glyma.20G182000' => 'gma', 'Gohir.A01G221726' => 'ghi', 'Gohir.A07G134600' => 'ghi', 'Gohir.A07G146000' => 'ghi', 'Gohir.A08G173900' => 'ghi', 'Gohir.A09G194900' => 'ghi', 'Gohir.A10G204100' => 'ghi', 'Gohir.A11G080600' => 'ghi', 'Gohir.A11G327500' => 'ghi', 'Gohir.A12G101800' => 'ghi', 'Gohir.D01G211200' => 'ghi', 'Gohir.D07G139200' => 'ghi', 'Gohir.D07G152100' => 'ghi', 'Gohir.D08G192600' => 'ghi', 'Gohir.D09G189200' => 'ghi', 'Gohir.D10G212000' => 'ghi', 'Gohir.D11G085200' => 'ghi', 'Gohir.D11G346400' => 'ghi', 'Gohir.D12G104800' => 'ghi', 'Gorai.001G151300' => 'gra', 'Gorai.001G174100' => 'gra', 'Gorai.002G257000' => 'gra', 'Gorai.004G202600' => 'gra', 'Gorai.007G090900' => 'gra', 'Gorai.007G376700' => 'gra', 'Gorai.008G114100' => 'gra', 'Gorai.011G237900' => 'gra', 'GSVIVG01005450001' => 'vvi', 'GSVIVG01016232001' => 'vvi', 'GSVIVG01026157001' => 'vvi', 'GSVIVG01027419001' => 'vvi', 'GSVIVG01027631001' => 'vvi', 'GSVIVG01034143001' => 'vvi', 'HanXRQChr03g0093921' => 'han', 'HanXRQChr04g0120001' => 'han', 'HanXRQChr04g0122561' => 'han', 'HanXRQChr09g0246851' => 'han', 'HanXRQChr10g0293311' => 'han', 'HanXRQChr13g0425231' => 'han', 'HanXRQChr16g0532571' => 'han', 'Haze_09050' => 'cav', 'Haze_15715' => 'cav', 'Haze_15716' => 'cav', 'Haze_16803' => 'cav', 'Haze_16850' => 'cav', 'Hma1.2p1_0301F.1_g118655' => 'hma', 'Hma1.2p1_0309F.1_g120590' => 'hma', 'Hma1.2p1_0936F.1_g238900' => 'hma', 'Hma1.2p1_3552F.1_g336740' => 'hma', 'HPP92_003520' => 'vpl', 'HPP92_006628' => 'vpl', 'HPP92_006645' => 'vpl', 'HPP92_014669' => 'vpl', 'HPP92_015077' => 'vpl', 'Hund16742' => 'sun', 'Hund17022' => 'sun', 'Lalb_Chr02g0152131' => 'lal', 'Lalb_Chr05g0225371' => 'lal', 'Lalb_Chr07g0189841' => 'lal', 'Lalb_Chr07g0192961' => 'lal', 'Lalb_Chr12g0208221' => 'lal', 'Lalb_Chr13g0291211' => 'lal', 'Lalb_Chr13g0291781' => 'lal', 'Lalb_Chr18g0044651' => 'lal', 'Lalb_Chr21g0313731' => 'lal', 'Lj1g0022533' => 'lja', 'Lj2A18T50' => 'lonja', 'Lj2A92G93' => 'lonja', 'Lj3A965T73' => 'lonja', 'Lj3g0000673' => 'lja', 'Lj3g0002666' => 'lja', 'Lj4g0016985' => 'lja', 'Lj5g0003625' => 'lja', 'Lj7A529G36' => 'lonja', 'Lj9A569T49' => 'lonja', 'Lj9A604T63' => 'lonja', 'Lsat_1_v5_gn_3_132060' => 'lsa', 'Lsat_1_v5_gn_4_68941' => 'lsa', 'Lsat_1_v5_gn_5_95580' => 'lsa', 'Lsat_1_v5_gn_7_161' => 'lsa', 'Lsat_1_v5_gn_7_7041' => 'lsa', 'Lsat_1_v5_gn_9_33481' => 'lsa', 'Lsat_1_v5_gn_9_68260' => 'lsa', 'Manes.01G073100' => 'mes', 'Manes.01G266300' => 'mes', 'Manes.02G033300' => 'mes', 'Manes.05G017900' => 'mes', 'Manes.05G046100' => 'mes', 'Manes.08G080900' => 'mes', 'Manes.10G049400' => 'mes', 'Mapoly0009s0186' => 'mpo', 'Mapoly0036s0118' => 'mpo', 'Mapoly0101s0046' => 'mpo', 'MBI04_g30218_MAGBIO' => 'mbi', 'MBI04_g35564_MAGBIO' => 'mbi', 'MBI12_g34011_MAGBIO' => 'mbi', 'MBI14_g04655_MAGBIO' => 'mbi', 'MCO07G653' => 'mco', 'MCO10G173' => 'mco', 'MD01G1087100' => 'mdo', 'MD01G1104200' => 'mdo', 'MD02G1205100' => 'mdo', 'MD04G1079200' => 'mdo', 'MD04G1131400' => 'mdo', 'MD07G1121600' => 'mdo', 'MD07G1157300' => 'mdo', 'MD07G1171000' => 'mdo', 'MD12G1144500' => 'mdo', 'Medtr1g094610' => 'mtr', 'Medtr4g021795' => 'mtr', 'Medtr4g023760' => 'mtr', 'Medtr7g118050' => 'mtr', 'MELO3C005582.2' => 'cme', 'MELO3C005989.2' => 'cme', 'MELO3C006192.2' => 'cme', 'MELO3C009248.2' => 'cme', 'MELO3C019817.2' => 'cme', 'Migut.B01625' => 'egut', 'Migut.B01915' => 'egut', 'Migut.F01721' => 'egut', 'Migut.J00314' => 'egut', 'MSTRG.20742' => 'ama', 'MSTRG.8134' => 'ama', 'Nitab4.5_0000096g0010' => 'nta', 'Nitab4.5_0000202g0030' => 'nta', 'Nitab4.5_0000216g0370' => 'nta', 'Nitab4.5_0000457g0230' => 'nta', 'Nitab4.5_0001702g0170' => 'nta', 'Nitab4.5_0003607g0010' => 'nta', 'Nitab4.5_0004917g0020' => 'nta', 'Nitab4.5_0007059g0010' => 'nta', 'Nitab4.5_0007184g0010' => 'nta', 'Nitab4.5_0007346g0020' => 'nta', 'Nn1g00410' => 'nnu', 'Nn1g01252' => 'nnu', 'Nn2g11168' => 'nnu', 'Nn2g13403' => 'nnu', 'Nn2g13760' => 'nnu', 'Nn4g26380' => 'nnu', 'Oeu000806.2' => 'oeu', 'Oeu005788.1' => 'oeu', 'Oeu006900.3' => 'oeu', 'Oeu007797.1' => 'oeu', 'Oeu011932.1' => 'oeu', 'Oeu022739.1' => 'oeu', 'Oeu037918.1' => 'oeu', 'Oeu055490.2' => 'oeu', 'Os01g0844400' => 'osa', 'Os02g0819100' => 'osa', 'Os03g0804300' => 'osa', 'Os05g0458000' => 'osa', 'Os07g0467800' => 'osa', 'Os12g0602200' => 'osa', 'Peaxi162Scf00013g03444' => 'pax', 'Peaxi162Scf00094g01120' => 'pax', 'Peaxi162Scf00191g01211' => 'pax', 'Peaxi162Scf00238g01110' => 'pax', 'Peaxi162Scf00330g00719' => 'pax', 'Peaxi162Scf00627g00018' => 'pax', 'PGR031G2686' => 'pgr', 'PGR042G0809' => 'pgr', 'PGR142G0193' => 'pgr', 'PGSC0003DMG400011066' => 'stu', 'PGSC0003DMG400012041' => 'stu', 'PGSC0003DMG400013678' => 'stu', 'PGSC0003DMG400023477' => 'stu', 'PGSC0003DMG400025956' => 'stu', 'PGSC0003DMG401019151' => 'stu', 'Phvul.006G116400' => 'pvu', 'Phvul.007G097300' => 'pvu', 'Phvul.010G015000' => 'pvu', 'Phvul.010G083900' => 'pvu', 'Potri.001G117100' => 'ptr', 'Potri.002G147300' => 'ptr', 'Potri.003G115600' => 'ptr', 'Potri.006G087400' => 'ptr', 'Potri.010G226100' => 'ptr', 'Potri.014G069200' => 'ptr', 'Potri.014G104000' => 'ptr', 'Potri.016G100200' => 'ptr', 'Pp3c10_20450' => 'ppa', 'Pp3c1_42400' => 'ppa', 'Pp3c3_24390' => 'ppa', 'Pp3c3_2860' => 'ppa', 'PRCOL_00003193' => 'pco', 'Prupe.2G144500' => 'ppe', 'Prupe.2G195700' => 'ppe', 'Prupe.2G209800' => 'ppe', 'Prupe.5G080000' => 'ppe', 'Prupe.6G257900' => 'ppe', 'Psat3g001160' => 'psa', 'Psat6g181880' => 'psa', 'Psat7g233720' => 'psa', 'PSO063G7587' => 'pso', 'PSO339G2145' => 'pso', 'PSO339G3369' => 'pso', 'PSO478G2747' => 'pso', 'PSO513G0140' => 'pso', 'PSO782G1614' => 'pso', 'PSO782G4889' => 'pso', 'PSO782G5485' => 'pso', 'PSO801G0241' => 'pso', 'QL07p048854' => 'qlo', 'QL08p046745' => 'qlo', 'QL08p052606' => 'qlo', 'QL08p053414' => 'qlo', 'QL08p054868' => 'qlo', 'RcHm_v2.0_Chr1g0350251' => 'rch', 'RcHm_v2.0_Chr1g0360851' => 'rch', 'RcHm_v2.0_Chr1g0362791' => 'rch', 'RcHm_v2.0_Chr3g0466281' => 'rch', 'RcHm_v2.0_Chr7g0201481' => 'rch', 'Rhsim01G0148600' => 'rsi', 'Rhsim05G0194400' => 'rsi', 'Rhsim07G0000700' => 'rsi', 'Rhsim07G0000800' => 'rsi', 'Rhsim07G0027900' => 'rsi', 'Rhsim09G0149500' => 'rsi', 'RhsimUnG0186900' => 'rsi', 'Sabra01G0089900' => 'sbr', 'Sabra02G0114700' => 'sbr', 'Sabra02G0116300' => 'sbr', 'Sabra03G0080100' => 'sbr', 'Sabra08G0024300' => 'sbr', 'Sabra10G0174300' => 'sbr', 'Sabra14G0048900' => 'sbr', 'Sabra14G0076500' => 'sbr', 'SalBow5G2513' => 'sbo', 'Sc01g0002300' => 'sci', 'Sc01g0004450' => 'sci', 'Sc06g0001680' => 'sci', 'Sc23g0003580' => 'sci', 'Sed0000913' => 'sed', 'Sed0001655' => 'sed', 'Sed0007745' => 'sed', 'Sed0010951' => 'sed', 'Sed0017599' => 'sed', 'Sed0021405' => 'sed', 'Sed0022810' => 'sed', 'SEGI_07099' => 'sgi', 'SEGI_11931' => 'sgi', 'SEGI_13187' => 'sgi', 'SEGI_29958' => 'sgi', 'SEGI_36351' => 'sgi', 'SGA_v2.0_scaffold126G33770' => 'sas', 'SGA_v2.0_scaffold153G37003' => 'sas', 'SGA_v2.0_scaffold2G01359' => 'sas', 'SGA_v2.0_scaffold5G03064' => 'sas', 'SGA_v2.0_scaffold95G28903' => 'sas', 'SHI12701' => 'shi', 'SHI26410' => 'shi', 'SHI38997' => 'shi', 'SHI53759' => 'shi', 'SHI53886' => 'shi', 'SHI54714' => 'shi', 'SMO011G0041' => 'smo', 'SMO146G0251' => 'smo', 'SMO160G0004' => 'smo', 'SMO174G0057' => 'smo', 'SMO244G0089' => 'smo', 'SMO296G0011' => 'smo', 'Solyc01g091280.3' => 'sly', 'Solyc05g047610.3' => 'sly', 'Solyc05g047640.3' => 'sly', 'Solyc05g055630.3' => 'sly', 'Solyc10g018160.2' => 'sly', 'Solyc10g084820.2' => 'sly', 'Solyc10g086565.2' => 'sly', 'Sopen01g037030' => 'spe', 'Sopen05g027920' => 'spe', 'Sopen05g034070' => 'spe', 'Sopen10g007260' => 'spe', 'Sopen10g034260' => 'spe', 'Sopen10g035950' => 'spe', 'Sp3g07710' => 'spa', 'Sp4g27420' => 'spa', 'Sp5g02450' => 'spa', 'Sp6g01280' => 'spa', 'Sp6g38480' => 'spa', 'Sp7g20780' => 'spa', 'TAR374G1413' => 'tar', 'TAR623G1777' => 'tar', 'TAR629G2370' => 'tar', 'TAR633G1759' => 'tar', 'TAR636G3387' => 'tar', 'THA.LOC104802447' => 'tha', 'THA.LOC104813916' => 'tha', 'THA.LOC104816423' => 'tha', 'THA.LOC104817246' => 'tha', 'THA.LOC104825895' => 'tha', 'Thecc.01G335200' => 'tca', 'Thecc.01G377400' => 'tca', 'Thecc.03G262200' => 'tca', 'Thecc.05G036800' => 'tca', 'Thecc.10G080500' => 'tca', 'Thecc.10G080800' => 'tca', 'Thhalv10001560m.g' => 'esa', 'Thhalv10006120m.g' => 'esa', 'Thhalv10014375m.g' => 'esa', 'Thhalv10021264m.g' => 'esa', 'Thhalv10028856m.g' => 'esa', 'TPR.G1914' => 'tpr', 'TPR.G4757' => 'tpr', 'TPR.G5595' => 'tpr', 'TWI14G0952' => 'twi', 'TWI14G1307' => 'twi', 'TWI38G2143' => 'twi', 'TWI59G0826' => 'twi', 'TWI77G0527' => 'twi', 'TWI81G0150' => 'twi', 'unitig_21.g21018' => 'ugi', 'unitig_26.g9725' => 'ugi', 'unitig_744.g24653' => 'ugi', 'unitig_749.g13778' => 'ugi', 'unitig_899.g15035' => 'ugi', 'vmacro04296' => 'vma', 'vmacro04852' => 'vma', 'vmacro13404' => 'vma', 'vmacro20169' => 'vma', 'vmacro21014' => 'vma', 'VMungo0331G0237' => 'vmu', 'VMungo0331G0706' => 'vmu', 'VMungo0331G1361' => 'vmu', 'VMungo0331G1489' => 'vmu', 'VMungo0540G1037' => 'vmu', 'VMungo0720G2487' => 'vmu', 'VMungo0720G2721' => 'vmu', 'Zm00001eb086860' => 'zma', 'Zm00001eb104760' => 'zma', 'Zm00001eb148220' => 'zma', 'Zm00001eb259030' => 'zma', 'Zm00001eb289590' => 'zma', 'Zm00001eb420150' => 'zma' ), 'gf_id' => 'HOM05D000968', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000968' ), 'data_identifier' => 'HOM05D000968', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000968', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p31690' => 'bna', 'A03p36040' => 'bna', 'A03p53730' => 'bna', 'A04p01410' => 'bna', 'A05p05420' => 'bna', 'A05p39630' => 'bna', 'A05p39640' => 'bna', 'A09p00970' => 'bna', 'A09p53060' => 'bna', 'A10p31890' => 'bna', 'Aa31LG10G15040' => 'aar', 'Aa31LG1G21090' => 'aar', 'Aa31LG1G26900' => 'aar', 'Aa31LG3G1820' => 'aar', 'Aa31LG5G1100' => 'aar', 'Aa31LG6G4740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2265' => 'aag', 'Actinidia07998' => 'ach', 'Actinidia11266' => 'ach', 'Actinidia12682' => 'ach', 'Actinidia26479' => 'ach', 'Actinidia31406' => 'ach', 'Actinidia32437' => 'ach', 'Actinidia38862' => 'ach', 'Ah.05g174230' => 'amhyb', 'Ah.05g179070' => 'amhyb', 'Ah.05g179090' => 'amhyb', 'Ah.12g059950' => 'amhyb', 'AL3G20480' => 'aly', 'AL4G44520' => 'aly', 'AL5G43110' => 'aly', 'AL6G13890' => 'aly', 'AL6G52620' => 'aly', 'AL7G30830' => 'aly', 'Aqoxy1G00899' => 'aox', 'Aqoxy5G04333' => 'aox', 'Aqoxy7G00641' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3IZ0NN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4EF6AW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W9P8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79GA3M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C43NQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFCU6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G95YVJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCHK29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LU1UG8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX91RN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGB4B1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8DA0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9H7JI' => 'arhy', 'AT3G09320' => 'ath', 'AT3G60800' => 'ath', 'AT4G00840' => 'ath', 'AT4G22750' => 'ath', 'AT5G04270' => 'ath', 'ATR0090G003' => 'atr', 'ATR0559G349' => 'atr', 'ATR0680G261' => 'atr', 'ATR0810G048' => 'atr', 'Atru.chr12.831' => 'acertr', 'Atru.chr5.303' => 'acertr', 'Atru.chr5.748' => 'acertr', 'Atru.chr8.1999' => 'acertr', 'Atru.chr9.1436' => 'acertr', 'AUR62004211' => 'cqu', 'AUR62004548' => 'cqu', 'AUR62013637' => 'cqu', 'AUR62022662' => 'cqu', 'AUR62025777' => 'cqu', 'AUR62042386' => 'cqu', 'BcaB01g02310' => 'bca', 'BcaB01g06062' => 'bca', 'BcaB02g08975' => 'bca', 'BcaB02g08980' => 'bca', 'BcaC01g04228' => 'bca', 'BcaC01g06830' => 'bca', 'BcaC02g10186' => 'bca', 'BcaC02g12214' => 'bca', 'BcaC04g24101' => 'bca', 'BcaC05g29520' => 'bca', 'BcaC05g29661' => 'bca', 'BcaC06g32130' => 'bca', 'BcaC06g32131' => 'bca', 'BcaC07g40601' => 'bca', 'BcaC07g42641' => 'bca', 'BcaNung01038' => 'bca', 'BcaNung01676' => 'bca', 'BcaNung02480' => 'bca', 'BcaNung07376' => 'bca', 'BolC3t16146H' => 'bol', 'BolC3t16637H' => 'bol', 'BolC4t22257H' => 'bol', 'BolC4t24728H' => 'bol', 'BolC5t34517H' => 'bol', 'BolC7t45703H' => 'bol', 'BolC8t51166H' => 'bol', 'BolC9t53038H' => 'bol', 'BolC9t60000H' => 'bol', 'BraA01t01345Z' => 'bra', 'BraA01t01346Z' => 'bra', 'BraA01t01348Z' => 'bra', 'BraA03t12347Z' => 'bra', 'BraA03t12775Z' => 'bra', 'BraA03t14439Z' => 'bra', 'BraA04t15860Z' => 'bra', 'BraA05t19511Z' => 'bra', 'BraA05t22746Z' => 'bra', 'BraA09t35767Z' => 'bra', 'BraA09t40732Z' => 'bra', 'BraA10t45233Z' => 'bra', 'C03p38720' => 'bna', 'C03p43680' => 'bna', 'C04p06350' => 'bna', 'C04p31800' => 'bna', 'C05p58680' => 'bna', 'C07p52110' => 'bna', 'C08p35760' => 'bna', 'C09p01050' => 'bna', 'C09p72600' => 'bna', 'CAN.G106.2' => 'can', 'CAN.G1482.1' => 'can', 'CAN.G324.12' => 'can', 'CAN.G388.20' => 'can', 'CAN.G412.7' => 'can', 'CAN.G694.32' => 'can', 'CAN.G92.12' => 'can', 'CANSAT11G2353' => 'cansat', 'CANSAT21G1398' => 'cansat', 'CANSAT56G2456' => 'cansat', 'CANSAT56G3031' => 'cansat', 'CANSAT56G4539' => 'cansat', 'CARHR083680' => 'chi', 'CARHR171190' => 'chi', 'CARHR209010' => 'chi', 'CARHR229680' => 'chi', 'CARHR249490' => 'chi', 'Carub.0003s0844' => 'cru', 'Carub.0005s2755' => 'cru', 'Carub.0006s0322' => 'cru', 'Carub.0006s3586' => 'cru', 'Carub.0007s1855' => 'cru', 'Ca_07808_v3' => 'car', 'Ca_09535_v3' => 'car', 'Ca_10548_v3' => 'car', 'Ca_19913_v3' => 'car', 'Ca_19916_v3' => 'car', 'Ca_19975_v3' => 'car', 'CBR_g22876' => 'cbr', 'CBR_g22879' => 'cbr', 'CBR_g38491' => 'cbr', 'CBR_g54185' => 'cbr', 'CBR_g54190' => 'cbr', 'Cc02_g11020' => 'ccan', 'Cc02_g23920' => 'ccan', 'Cc02_g39860' => 'ccan', 'Cc02_g39870' => 'ccan', 'Cc03_g06760' => 'ccan', 'Cc06_g02450' => 'ccan', 'Cc09_g09450' => 'ccan', 'CDE02G1959' => 'cde', 'CDE04G0600' => 'cde', 'CDE07G1996' => 'cde', 'CDE07G2078' => 'cde', 'CDE11G0611' => 'cde', 'Cfa001683' => 'cfa', 'Cfa001734' => 'cfa', 'Cfa001737' => 'cfa', 'Cfa003751' => 'cfa', 'Cfa012019' => 'cfa', 'Cfa017353' => 'cfa', 'Cfa017732' => 'cfa', 'Cfa022464' => 'cfa', 'Ciclev10012400m.g' => 'ccl', 'Ciclev10021242m.g' => 'ccl', 'Ciclev10021302m.g' => 'ccl', 'Ciclev10021463m.g' => 'ccl', 'Ciclev10032359m.g' => 'ccl', 'CiPaw.01G081000' => 'cil', 'CiPaw.01G262500' => 'cil', 'CiPaw.01G269800' => 'cil', 'CiPaw.02G168400' => 'cil', 'CiPaw.05G119500' => 'cil', 'CiPaw.11G147300' => 'cil', 'ClCG01G003630' => 'cla', 'ClCG05G000510' => 'cla', 'ClCG05G002300' => 'cla', 'ClCG08G007650' => 'cla', 'ClCG10G021250' => 'cla', 'COL.COLO4_06218' => 'col', 'COL.COLO4_12538' => 'col', 'COL.COLO4_14775' => 'col', 'COL.COLO4_23875' => 'col', 'Cpa.g.sc141.16' => 'cpa', 'Cpa.g.sc169.16' => 'cpa', 'Cpa.g.sc244.4' => 'cpa', 'Cpa.g.sc244.5' => 'cpa', 'Cpa.g.sc29.87' => 'cpa', 'Cpa.g.sc53.115' => 'cpa', 'Cre03.g207502' => 'cre', 'Cre06.g277000' => 'cre', 'Cre09.g394050' => 'cre', 'CsaV3_3G007680' => 'csa', 'CsaV3_3G009710' => 'csa', 'CsaV3_3G034790' => 'csa', 'CsaV3_5G003750' => 'csa', 'CsaV3_6G036620' => 'csa', 'CSS0002288' => 'camsi', 'CSS0011250' => 'camsi', 'CSS0021619' => 'camsi', 'CSS0046701' => 'camsi', 'DCAR_006420' => 'dca', 'DCAR_006865' => 'dca', 'DCAR_008558' => 'dca', 'DCAR_028754' => 'dca', 'DCAR_028755' => 'dca', 'Dinv31218' => 'din', 'Dinv32371' => 'din', 'Dinv34250' => 'din', 'Dinv37156' => 'din', 'Dinv43704' => 'din', 'Duzib093G1811' => 'dzi', 'Duzib106G1622' => 'dzi', 'Duzib114G0504' => 'dzi', 'Duzib128G0338' => 'dzi', 'Duzib128G1577' => 'dzi', 'Duzib133G0104' => 'dzi', 'Duzib133G1080' => 'dzi', 'Duzib138G0324' => 'dzi', 'Duzib138G0394' => 'dzi', 'Duzib205G0122' => 'dzi', 'Duzib268G1020' => 'dzi', 'Duzib268G1359' => 'dzi', 'ECA232G3929' => 'eca', 'ECA236G2210' => 'eca', 'ECA236G2287' => 'eca', 'ECA240G4568' => 'eca', 'ECA247G0894' => 'eca', 'EL10Ac1g00200' => 'bvu', 'EL10Ac1g00886' => 'bvu', 'EL10As1g23091' => 'bvu', 'EL10As1g23092' => 'bvu', 'Eucgr.A01284' => 'egr', 'Eucgr.A01285' => 'egr', 'Eucgr.D02456' => 'egr', 'Eucgr.E00018' => 'egr', 'Eucgr.E01439' => 'egr', 'Eucgr.G02859' => 'egr', 'FAN01G0168' => 'fan', 'FAN01G0453' => 'fan', 'FAN01G2761' => 'fan', 'FAN02G1239' => 'fan', 'FAN03G0645' => 'fan', 'FAN03G2707' => 'fan', 'FAN03G2978' => 'fan', 'FAN04G0227' => 'fan', 'FAN06G0091' => 'fan', 'FAN06G1418' => 'fan', 'FAN06G1512' => 'fan', 'FAN06G1986' => 'fan', 'FAN06G2905' => 'fan', 'FAN06G4325' => 'fan', 'FAN08G0033' => 'fan', 'FAN09G0642' => 'fan', 'FAN10G1763' => 'fan', 'FAN10G2026' => 'fan', 'FAN10G2513' => 'fan', 'FAN10G3402' => 'fan', 'FAN10G3564' => 'fan', 'FAN10G3987' => 'fan', 'FAN13G1490' => 'fan', 'FAN14G5857' => 'fan', 'FAN18G1188' => 'fan', 'FvH4_5g00750' => 'fve', 'FvH4_6g13410' => 'fve', 'FvH4_7g11740' => 'fve', 'FvH4_7g17410' => 'fve', 'FvH4_7g18860' => 'fve', 'Glyma.01G099100' => 'gma', 'Glyma.01G142300' => 'gma', 'Glyma.03G025500' => 'gma', 'Glyma.03G069700' => 'gma', 'Glyma.03G260000' => 'gma', 'Glyma.09G269800' => 'gma', 'Glyma.10G208700' => 'gma', 'Glyma.18G220400' => 'gma', 'Glyma.20G182000' => 'gma', 'Gohir.A01G221726' => 'ghi', 'Gohir.A07G134600' => 'ghi', 'Gohir.A07G146000' => 'ghi', 'Gohir.A08G173900' => 'ghi', 'Gohir.A09G194900' => 'ghi', 'Gohir.A10G204100' => 'ghi', 'Gohir.A11G080600' => 'ghi', 'Gohir.A11G327500' => 'ghi', 'Gohir.A12G101800' => 'ghi', 'Gohir.D01G211200' => 'ghi', 'Gohir.D07G139200' => 'ghi', 'Gohir.D07G152100' => 'ghi', 'Gohir.D08G192600' => 'ghi', 'Gohir.D09G189200' => 'ghi', 'Gohir.D10G212000' => 'ghi', 'Gohir.D11G085200' => 'ghi', 'Gohir.D11G346400' => 'ghi', 'Gohir.D12G104800' => 'ghi', 'Gorai.001G151300' => 'gra', 'Gorai.001G174100' => 'gra', 'Gorai.002G257000' => 'gra', 'Gorai.004G202600' => 'gra', 'Gorai.007G090900' => 'gra', 'Gorai.007G376700' => 'gra', 'Gorai.008G114100' => 'gra', 'Gorai.011G237900' => 'gra', 'GSVIVG01005450001' => 'vvi', 'GSVIVG01016232001' => 'vvi', 'GSVIVG01026157001' => 'vvi', 'GSVIVG01027419001' => 'vvi', 'GSVIVG01027631001' => 'vvi', 'GSVIVG01034143001' => 'vvi', 'HanXRQChr03g0093921' => 'han', 'HanXRQChr04g0120001' => 'han', 'HanXRQChr04g0122561' => 'han', 'HanXRQChr09g0246851' => 'han', 'HanXRQChr10g0293311' => 'han', 'HanXRQChr13g0425231' => 'han', 'HanXRQChr16g0532571' => 'han', 'Haze_09050' => 'cav', 'Haze_15715' => 'cav', 'Haze_15716' => 'cav', 'Haze_16803' => 'cav', 'Haze_16850' => 'cav', 'Hma1.2p1_0301F.1_g118655' => 'hma', 'Hma1.2p1_0309F.1_g120590' => 'hma', 'Hma1.2p1_0936F.1_g238900' => 'hma', 'Hma1.2p1_3552F.1_g336740' => 'hma', 'HPP92_003520' => 'vpl', 'HPP92_006628' => 'vpl', 'HPP92_006645' => 'vpl', 'HPP92_014669' => 'vpl', 'HPP92_015077' => 'vpl', 'Hund16742' => 'sun', 'Hund17022' => 'sun', 'Lalb_Chr02g0152131' => 'lal', 'Lalb_Chr05g0225371' => 'lal', 'Lalb_Chr07g0189841' => 'lal', 'Lalb_Chr07g0192961' => 'lal', 'Lalb_Chr12g0208221' => 'lal', 'Lalb_Chr13g0291211' => 'lal', 'Lalb_Chr13g0291781' => 'lal', 'Lalb_Chr18g0044651' => 'lal', 'Lalb_Chr21g0313731' => 'lal', 'Lj1g0022533' => 'lja', 'Lj2A18T50' => 'lonja', 'Lj2A92G93' => 'lonja', 'Lj3A965T73' => 'lonja', 'Lj3g0000673' => 'lja', 'Lj3g0002666' => 'lja', 'Lj4g0016985' => 'lja', 'Lj5g0003625' => 'lja', 'Lj7A529G36' => 'lonja', 'Lj9A569T49' => 'lonja', 'Lj9A604T63' => 'lonja', 'Lsat_1_v5_gn_3_132060' => 'lsa', 'Lsat_1_v5_gn_4_68941' => 'lsa', 'Lsat_1_v5_gn_5_95580' => 'lsa', 'Lsat_1_v5_gn_7_161' => 'lsa', 'Lsat_1_v5_gn_7_7041' => 'lsa', 'Lsat_1_v5_gn_9_33481' => 'lsa', 'Lsat_1_v5_gn_9_68260' => 'lsa', 'Manes.01G073100' => 'mes', 'Manes.01G266300' => 'mes', 'Manes.02G033300' => 'mes', 'Manes.05G017900' => 'mes', 'Manes.05G046100' => 'mes', 'Manes.08G080900' => 'mes', 'Manes.10G049400' => 'mes', 'Mapoly0009s0186' => 'mpo', 'Mapoly0036s0118' => 'mpo', 'Mapoly0101s0046' => 'mpo', 'MBI04_g30218_MAGBIO' => 'mbi', 'MBI04_g35564_MAGBIO' => 'mbi', 'MBI12_g34011_MAGBIO' => 'mbi', 'MBI14_g04655_MAGBIO' => 'mbi', 'MCO07G653' => 'mco', 'MCO10G173' => 'mco', 'MD01G1087100' => 'mdo', 'MD01G1104200' => 'mdo', 'MD02G1205100' => 'mdo', 'MD04G1079200' => 'mdo', 'MD04G1131400' => 'mdo', 'MD07G1121600' => 'mdo', 'MD07G1157300' => 'mdo', 'MD07G1171000' => 'mdo', 'MD12G1144500' => 'mdo', 'Medtr1g094610' => 'mtr', 'Medtr4g021795' => 'mtr', 'Medtr4g023760' => 'mtr', 'Medtr7g118050' => 'mtr', 'MELO3C005582.2' => 'cme', 'MELO3C005989.2' => 'cme', 'MELO3C006192.2' => 'cme', 'MELO3C009248.2' => 'cme', 'MELO3C019817.2' => 'cme', 'Migut.B01625' => 'egut', 'Migut.B01915' => 'egut', 'Migut.F01721' => 'egut', 'Migut.J00314' => 'egut', 'MSTRG.20742' => 'ama', 'MSTRG.8134' => 'ama', 'Nitab4.5_0000096g0010' => 'nta', 'Nitab4.5_0000202g0030' => 'nta', 'Nitab4.5_0000216g0370' => 'nta', 'Nitab4.5_0000457g0230' => 'nta', 'Nitab4.5_0001702g0170' => 'nta', 'Nitab4.5_0003607g0010' => 'nta', 'Nitab4.5_0004917g0020' => 'nta', 'Nitab4.5_0007059g0010' => 'nta', 'Nitab4.5_0007184g0010' => 'nta', 'Nitab4.5_0007346g0020' => 'nta', 'Nn1g00410' => 'nnu', 'Nn1g01252' => 'nnu', 'Nn2g11168' => 'nnu', 'Nn2g13403' => 'nnu', 'Nn2g13760' => 'nnu', 'Nn4g26380' => 'nnu', 'Oeu000806.2' => 'oeu', 'Oeu005788.1' => 'oeu', 'Oeu006900.3' => 'oeu', 'Oeu007797.1' => 'oeu', 'Oeu011932.1' => 'oeu', 'Oeu022739.1' => 'oeu', 'Oeu037918.1' => 'oeu', 'Oeu055490.2' => 'oeu', 'Os01g0844400' => 'osa', 'Os02g0819100' => 'osa', 'Os03g0804300' => 'osa', 'Os05g0458000' => 'osa', 'Os07g0467800' => 'osa', 'Os12g0602200' => 'osa', 'Peaxi162Scf00013g03444' => 'pax', 'Peaxi162Scf00094g01120' => 'pax', 'Peaxi162Scf00191g01211' => 'pax', 'Peaxi162Scf00238g01110' => 'pax', 'Peaxi162Scf00330g00719' => 'pax', 'Peaxi162Scf00627g00018' => 'pax', 'PGR031G2686' => 'pgr', 'PGR042G0809' => 'pgr', 'PGR142G0193' => 'pgr', 'PGSC0003DMG400011066' => 'stu', 'PGSC0003DMG400012041' => 'stu', 'PGSC0003DMG400013678' => 'stu', 'PGSC0003DMG400023477' => 'stu', 'PGSC0003DMG400025956' => 'stu', 'PGSC0003DMG401019151' => 'stu', 'Phvul.006G116400' => 'pvu', 'Phvul.007G097300' => 'pvu', 'Phvul.010G015000' => 'pvu', 'Phvul.010G083900' => 'pvu', 'Potri.001G117100' => 'ptr', 'Potri.002G147300' => 'ptr', 'Potri.003G115600' => 'ptr', 'Potri.006G087400' => 'ptr', 'Potri.010G226100' => 'ptr', 'Potri.014G069200' => 'ptr', 'Potri.014G104000' => 'ptr', 'Potri.016G100200' => 'ptr', 'Pp3c10_20450' => 'ppa', 'Pp3c1_42400' => 'ppa', 'Pp3c3_24390' => 'ppa', 'Pp3c3_2860' => 'ppa', 'PRCOL_00003193' => 'pco', 'Prupe.2G144500' => 'ppe', 'Prupe.2G195700' => 'ppe', 'Prupe.2G209800' => 'ppe', 'Prupe.5G080000' => 'ppe', 'Prupe.6G257900' => 'ppe', 'Psat3g001160' => 'psa', 'Psat6g181880' => 'psa', 'Psat7g233720' => 'psa', 'PSO063G7587' => 'pso', 'PSO339G2145' => 'pso', 'PSO339G3369' => 'pso', 'PSO478G2747' => 'pso', 'PSO513G0140' => 'pso', 'PSO782G1614' => 'pso', 'PSO782G4889' => 'pso', 'PSO782G5485' => 'pso', 'PSO801G0241' => 'pso', 'QL07p048854' => 'qlo', 'QL08p046745' => 'qlo', 'QL08p052606' => 'qlo', 'QL08p053414' => 'qlo', 'QL08p054868' => 'qlo', 'RcHm_v2.0_Chr1g0350251' => 'rch', 'RcHm_v2.0_Chr1g0360851' => 'rch', 'RcHm_v2.0_Chr1g0362791' => 'rch', 'RcHm_v2.0_Chr3g0466281' => 'rch', 'RcHm_v2.0_Chr7g0201481' => 'rch', 'Rhsim01G0148600' => 'rsi', 'Rhsim05G0194400' => 'rsi', 'Rhsim07G0000700' => 'rsi', 'Rhsim07G0000800' => 'rsi', 'Rhsim07G0027900' => 'rsi', 'Rhsim09G0149500' => 'rsi', 'RhsimUnG0186900' => 'rsi', 'Sabra01G0089900' => 'sbr', 'Sabra02G0114700' => 'sbr', 'Sabra02G0116300' => 'sbr', 'Sabra03G0080100' => 'sbr', 'Sabra08G0024300' => 'sbr', 'Sabra10G0174300' => 'sbr', 'Sabra14G0048900' => 'sbr', 'Sabra14G0076500' => 'sbr', 'SalBow5G2513' => 'sbo', 'Sc01g0002300' => 'sci', 'Sc01g0004450' => 'sci', 'Sc06g0001680' => 'sci', 'Sc23g0003580' => 'sci', 'Sed0000913' => 'sed', 'Sed0001655' => 'sed', 'Sed0007745' => 'sed', 'Sed0010951' => 'sed', 'Sed0017599' => 'sed', 'Sed0021405' => 'sed', 'Sed0022810' => 'sed', 'SEGI_07099' => 'sgi', 'SEGI_11931' => 'sgi', 'SEGI_13187' => 'sgi', 'SEGI_29958' => 'sgi', 'SEGI_36351' => 'sgi', 'SGA_v2.0_scaffold126G33770' => 'sas', 'SGA_v2.0_scaffold153G37003' => 'sas', 'SGA_v2.0_scaffold2G01359' => 'sas', 'SGA_v2.0_scaffold5G03064' => 'sas', 'SGA_v2.0_scaffold95G28903' => 'sas', 'SHI12701' => 'shi', 'SHI26410' => 'shi', 'SHI38997' => 'shi', 'SHI53759' => 'shi', 'SHI53886' => 'shi', 'SHI54714' => 'shi', 'SMO011G0041' => 'smo', 'SMO146G0251' => 'smo', 'SMO160G0004' => 'smo', 'SMO174G0057' => 'smo', 'SMO244G0089' => 'smo', 'SMO296G0011' => 'smo', 'Solyc01g091280.3' => 'sly', 'Solyc05g047610.3' => 'sly', 'Solyc05g047640.3' => 'sly', 'Solyc05g055630.3' => 'sly', 'Solyc10g018160.2' => 'sly', 'Solyc10g084820.2' => 'sly', 'Solyc10g086565.2' => 'sly', 'Sopen01g037030' => 'spe', 'Sopen05g027920' => 'spe', 'Sopen05g034070' => 'spe', 'Sopen10g007260' => 'spe', 'Sopen10g034260' => 'spe', 'Sopen10g035950' => 'spe', 'Sp3g07710' => 'spa', 'Sp4g27420' => 'spa', 'Sp5g02450' => 'spa', 'Sp6g01280' => 'spa', 'Sp6g38480' => 'spa', 'Sp7g20780' => 'spa', 'TAR374G1413' => 'tar', 'TAR623G1777' => 'tar', 'TAR629G2370' => 'tar', 'TAR633G1759' => 'tar', 'TAR636G3387' => 'tar', 'THA.LOC104802447' => 'tha', 'THA.LOC104813916' => 'tha', 'THA.LOC104816423' => 'tha', 'THA.LOC104817246' => 'tha', 'THA.LOC104825895' => 'tha', 'Thecc.01G335200' => 'tca', 'Thecc.01G377400' => 'tca', 'Thecc.03G262200' => 'tca', 'Thecc.05G036800' => 'tca', 'Thecc.10G080500' => 'tca', 'Thecc.10G080800' => 'tca', 'Thhalv10001560m.g' => 'esa', 'Thhalv10006120m.g' => 'esa', 'Thhalv10014375m.g' => 'esa', 'Thhalv10021264m.g' => 'esa', 'Thhalv10028856m.g' => 'esa', 'TPR.G1914' => 'tpr', 'TPR.G4757' => 'tpr', 'TPR.G5595' => 'tpr', 'TWI14G0952' => 'twi', 'TWI14G1307' => 'twi', 'TWI38G2143' => 'twi', 'TWI59G0826' => 'twi', 'TWI77G0527' => 'twi', 'TWI81G0150' => 'twi', 'unitig_21.g21018' => 'ugi', 'unitig_26.g9725' => 'ugi', 'unitig_744.g24653' => 'ugi', 'unitig_749.g13778' => 'ugi', 'unitig_899.g15035' => 'ugi', 'vmacro04296' => 'vma', 'vmacro04852' => 'vma', 'vmacro13404' => 'vma', 'vmacro20169' => 'vma', 'vmacro21014' => 'vma', 'VMungo0331G0237' => 'vmu', 'VMungo0331G0706' => 'vmu', 'VMungo0331G1361' => 'vmu', 'VMungo0331G1489' => 'vmu', 'VMungo0540G1037' => 'vmu', 'VMungo0720G2487' => 'vmu', 'VMungo0720G2721' => 'vmu', 'Zm00001eb086860' => 'zma', 'Zm00001eb104760' => 'zma', 'Zm00001eb148220' => 'zma', 'Zm00001eb259030' => 'zma', 'Zm00001eb289590' => 'zma', 'Zm00001eb420150' => 'zma' ) $gf_id = 'HOM05D000968' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000968' ) $data_identifier = 'HOM05D000968' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 19, 'bol' => (int) 9, 'bra' => (int) 12, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 5, 'ccan' => (int) 7, 'cde' => (int) 5, 'cfa' => (int) 8, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 4, 'dca' => (int) 5, 'din' => (int) 5, 'dzi' => (int) 12, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 25, 'fve' => (int) 5, 'gma' => (int) 9, 'ghi' => (int) 18, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 7, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 5, 'sun' => (int) 2, 'lal' => (int) 9, 'lja' => (int) 5, 'lonja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 9, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 2, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 3, 'stu' => (int) 6, 'pvu' => (int) 4, 'ptr' => (int) 8, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 3, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 1, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 5, 'sas' => (int) 5, 'shi' => (int) 6, 'smo' => (int) 6, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 3, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420150' $species_info = array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ) $local_species = 'tha' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000968', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p31690' => 'bna', 'A03p36040' => 'bna', 'A03p53730' => 'bna', 'A04p01410' => 'bna', 'A05p05420' => 'bna', 'A05p39630' => 'bna', 'A05p39640' => 'bna', 'A09p00970' => 'bna', 'A09p53060' => 'bna', 'A10p31890' => 'bna', 'Aa31LG10G15040' => 'aar', 'Aa31LG1G21090' => 'aar', 'Aa31LG1G26900' => 'aar', 'Aa31LG3G1820' => 'aar', 'Aa31LG5G1100' => 'aar', 'Aa31LG6G4740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2265' => 'aag', 'Actinidia07998' => 'ach', 'Actinidia11266' => 'ach', 'Actinidia12682' => 'ach', 'Actinidia26479' => 'ach', 'Actinidia31406' => 'ach', 'Actinidia32437' => 'ach', 'Actinidia38862' => 'ach', 'Ah.05g174230' => 'amhyb', 'Ah.05g179070' => 'amhyb', 'Ah.05g179090' => 'amhyb', 'Ah.12g059950' => 'amhyb', 'AL3G20480' => 'aly', 'AL4G44520' => 'aly', 'AL5G43110' => 'aly', 'AL6G13890' => 'aly', 'AL6G52620' => 'aly', 'AL7G30830' => 'aly', 'Aqoxy1G00899' => 'aox', 'Aqoxy5G04333' => 'aox', 'Aqoxy7G00641' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3IZ0NN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4EF6AW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W9P8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79GA3M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C43NQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFCU6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G95YVJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCHK29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LU1UG8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX91RN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGB4B1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8DA0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9H7JI' => 'arhy', 'AT3G09320' => 'ath', 'AT3G60800' => 'ath', 'AT4G00840' => 'ath', 'AT4G22750' => 'ath', 'AT5G04270' => 'ath', 'ATR0090G003' => 'atr', 'ATR0559G349' => 'atr', 'ATR0680G261' => 'atr', 'ATR0810G048' => 'atr', 'Atru.chr12.831' => 'acertr', 'Atru.chr5.303' => 'acertr', 'Atru.chr5.748' => 'acertr', 'Atru.chr8.1999' => 'acertr', 'Atru.chr9.1436' => 'acertr', 'AUR62004211' => 'cqu', 'AUR62004548' => 'cqu', 'AUR62013637' => 'cqu', 'AUR62022662' => 'cqu', 'AUR62025777' => 'cqu', 'AUR62042386' => 'cqu', 'BcaB01g02310' => 'bca', 'BcaB01g06062' => 'bca', 'BcaB02g08975' => 'bca', 'BcaB02g08980' => 'bca', 'BcaC01g04228' => 'bca', 'BcaC01g06830' => 'bca', 'BcaC02g10186' => 'bca', 'BcaC02g12214' => 'bca', 'BcaC04g24101' => 'bca', 'BcaC05g29520' => 'bca', 'BcaC05g29661' => 'bca', 'BcaC06g32130' => 'bca', 'BcaC06g32131' => 'bca', 'BcaC07g40601' => 'bca', 'BcaC07g42641' => 'bca', 'BcaNung01038' => 'bca', 'BcaNung01676' => 'bca', 'BcaNung02480' => 'bca', 'BcaNung07376' => 'bca', 'BolC3t16146H' => 'bol', 'BolC3t16637H' => 'bol', 'BolC4t22257H' => 'bol', 'BolC4t24728H' => 'bol', 'BolC5t34517H' => 'bol', 'BolC7t45703H' => 'bol', 'BolC8t51166H' => 'bol', 'BolC9t53038H' => 'bol', 'BolC9t60000H' => 'bol', 'BraA01t01345Z' => 'bra', 'BraA01t01346Z' => 'bra', 'BraA01t01348Z' => 'bra', 'BraA03t12347Z' => 'bra', 'BraA03t12775Z' => 'bra', 'BraA03t14439Z' => 'bra', 'BraA04t15860Z' => 'bra', 'BraA05t19511Z' => 'bra', 'BraA05t22746Z' => 'bra', 'BraA09t35767Z' => 'bra', 'BraA09t40732Z' => 'bra', 'BraA10t45233Z' => 'bra', 'C03p38720' => 'bna', 'C03p43680' => 'bna', 'C04p06350' => 'bna', 'C04p31800' => 'bna', 'C05p58680' => 'bna', 'C07p52110' => 'bna', 'C08p35760' => 'bna', 'C09p01050' => 'bna', 'C09p72600' => 'bna', 'CAN.G106.2' => 'can', 'CAN.G1482.1' => 'can', 'CAN.G324.12' => 'can', 'CAN.G388.20' => 'can', 'CAN.G412.7' => 'can', 'CAN.G694.32' => 'can', 'CAN.G92.12' => 'can', 'CANSAT11G2353' => 'cansat', 'CANSAT21G1398' => 'cansat', 'CANSAT56G2456' => 'cansat', 'CANSAT56G3031' => 'cansat', 'CANSAT56G4539' => 'cansat', 'CARHR083680' => 'chi', 'CARHR171190' => 'chi', 'CARHR209010' => 'chi', 'CARHR229680' => 'chi', 'CARHR249490' => 'chi', 'Carub.0003s0844' => 'cru', 'Carub.0005s2755' => 'cru', 'Carub.0006s0322' => 'cru', 'Carub.0006s3586' => 'cru', 'Carub.0007s1855' => 'cru', 'Ca_07808_v3' => 'car', 'Ca_09535_v3' => 'car', 'Ca_10548_v3' => 'car', 'Ca_19913_v3' => 'car', 'Ca_19916_v3' => 'car', 'Ca_19975_v3' => 'car', 'CBR_g22876' => 'cbr', 'CBR_g22879' => 'cbr', 'CBR_g38491' => 'cbr', 'CBR_g54185' => 'cbr', 'CBR_g54190' => 'cbr', 'Cc02_g11020' => 'ccan', 'Cc02_g23920' => 'ccan', 'Cc02_g39860' => 'ccan', 'Cc02_g39870' => 'ccan', 'Cc03_g06760' => 'ccan', 'Cc06_g02450' => 'ccan', 'Cc09_g09450' => 'ccan', 'CDE02G1959' => 'cde', 'CDE04G0600' => 'cde', 'CDE07G1996' => 'cde', 'CDE07G2078' => 'cde', 'CDE11G0611' => 'cde', 'Cfa001683' => 'cfa', 'Cfa001734' => 'cfa', 'Cfa001737' => 'cfa', 'Cfa003751' => 'cfa', 'Cfa012019' => 'cfa', 'Cfa017353' => 'cfa', 'Cfa017732' => 'cfa', 'Cfa022464' => 'cfa', 'Ciclev10012400m.g' => 'ccl', 'Ciclev10021242m.g' => 'ccl', 'Ciclev10021302m.g' => 'ccl', 'Ciclev10021463m.g' => 'ccl', 'Ciclev10032359m.g' => 'ccl', 'CiPaw.01G081000' => 'cil', 'CiPaw.01G262500' => 'cil', 'CiPaw.01G269800' => 'cil', 'CiPaw.02G168400' => 'cil', 'CiPaw.05G119500' => 'cil', 'CiPaw.11G147300' => 'cil', 'ClCG01G003630' => 'cla', 'ClCG05G000510' => 'cla', 'ClCG05G002300' => 'cla', 'ClCG08G007650' => 'cla', 'ClCG10G021250' => 'cla', 'COL.COLO4_06218' => 'col', 'COL.COLO4_12538' => 'col', 'COL.COLO4_14775' => 'col', 'COL.COLO4_23875' => 'col', 'Cpa.g.sc141.16' => 'cpa', 'Cpa.g.sc169.16' => 'cpa', 'Cpa.g.sc244.4' => 'cpa', 'Cpa.g.sc244.5' => 'cpa', 'Cpa.g.sc29.87' => 'cpa', 'Cpa.g.sc53.115' => 'cpa', 'Cre03.g207502' => 'cre', 'Cre06.g277000' => 'cre', 'Cre09.g394050' => 'cre', 'CsaV3_3G007680' => 'csa', 'CsaV3_3G009710' => 'csa', 'CsaV3_3G034790' => 'csa', 'CsaV3_5G003750' => 'csa', 'CsaV3_6G036620' => 'csa', 'CSS0002288' => 'camsi', 'CSS0011250' => 'camsi', 'CSS0021619' => 'camsi', 'CSS0046701' => 'camsi', 'DCAR_006420' => 'dca', 'DCAR_006865' => 'dca', 'DCAR_008558' => 'dca', 'DCAR_028754' => 'dca', 'DCAR_028755' => 'dca', 'Dinv31218' => 'din', 'Dinv32371' => 'din', 'Dinv34250' => 'din', 'Dinv37156' => 'din', 'Dinv43704' => 'din', 'Duzib093G1811' => 'dzi', 'Duzib106G1622' => 'dzi', 'Duzib114G0504' => 'dzi', 'Duzib128G0338' => 'dzi', 'Duzib128G1577' => 'dzi', 'Duzib133G0104' => 'dzi', 'Duzib133G1080' => 'dzi', 'Duzib138G0324' => 'dzi', 'Duzib138G0394' => 'dzi', 'Duzib205G0122' => 'dzi', 'Duzib268G1020' => 'dzi', 'Duzib268G1359' => 'dzi', 'ECA232G3929' => 'eca', 'ECA236G2210' => 'eca', 'ECA236G2287' => 'eca', 'ECA240G4568' => 'eca', 'ECA247G0894' => 'eca', 'EL10Ac1g00200' => 'bvu', 'EL10Ac1g00886' => 'bvu', 'EL10As1g23091' => 'bvu', 'EL10As1g23092' => 'bvu', 'Eucgr.A01284' => 'egr', 'Eucgr.A01285' => 'egr', 'Eucgr.D02456' => 'egr', 'Eucgr.E00018' => 'egr', 'Eucgr.E01439' => 'egr', 'Eucgr.G02859' => 'egr', 'FAN01G0168' => 'fan', 'FAN01G0453' => 'fan', 'FAN01G2761' => 'fan', 'FAN02G1239' => 'fan', 'FAN03G0645' => 'fan', 'FAN03G2707' => 'fan', 'FAN03G2978' => 'fan', 'FAN04G0227' => 'fan', 'FAN06G0091' => 'fan', 'FAN06G1418' => 'fan', 'FAN06G1512' => 'fan', 'FAN06G1986' => 'fan', 'FAN06G2905' => 'fan', 'FAN06G4325' => 'fan', 'FAN08G0033' => 'fan', 'FAN09G0642' => 'fan', 'FAN10G1763' => 'fan', 'FAN10G2026' => 'fan', 'FAN10G2513' => 'fan', 'FAN10G3402' => 'fan', 'FAN10G3564' => 'fan', 'FAN10G3987' => 'fan', 'FAN13G1490' => 'fan', 'FAN14G5857' => 'fan', 'FAN18G1188' => 'fan', 'FvH4_5g00750' => 'fve', 'FvH4_6g13410' => 'fve', 'FvH4_7g11740' => 'fve', 'FvH4_7g17410' => 'fve', 'FvH4_7g18860' => 'fve', 'Glyma.01G099100' => 'gma', 'Glyma.01G142300' => 'gma', 'Glyma.03G025500' => 'gma', 'Glyma.03G069700' => 'gma', 'Glyma.03G260000' => 'gma', 'Glyma.09G269800' => 'gma', 'Glyma.10G208700' => 'gma', 'Glyma.18G220400' => 'gma', 'Glyma.20G182000' => 'gma', 'Gohir.A01G221726' => 'ghi', 'Gohir.A07G134600' => 'ghi', 'Gohir.A07G146000' => 'ghi', 'Gohir.A08G173900' => 'ghi', 'Gohir.A09G194900' => 'ghi', 'Gohir.A10G204100' => 'ghi', 'Gohir.A11G080600' => 'ghi', 'Gohir.A11G327500' => 'ghi', 'Gohir.A12G101800' => 'ghi', 'Gohir.D01G211200' => 'ghi', 'Gohir.D07G139200' => 'ghi', 'Gohir.D07G152100' => 'ghi', 'Gohir.D08G192600' => 'ghi', 'Gohir.D09G189200' => 'ghi', 'Gohir.D10G212000' => 'ghi', 'Gohir.D11G085200' => 'ghi', 'Gohir.D11G346400' => 'ghi', 'Gohir.D12G104800' => 'ghi', 'Gorai.001G151300' => 'gra', 'Gorai.001G174100' => 'gra', 'Gorai.002G257000' => 'gra', 'Gorai.004G202600' => 'gra', 'Gorai.007G090900' => 'gra', 'Gorai.007G376700' => 'gra', 'Gorai.008G114100' => 'gra', 'Gorai.011G237900' => 'gra', 'GSVIVG01005450001' => 'vvi', 'GSVIVG01016232001' => 'vvi', 'GSVIVG01026157001' => 'vvi', 'GSVIVG01027419001' => 'vvi', 'GSVIVG01027631001' => 'vvi', 'GSVIVG01034143001' => 'vvi', 'HanXRQChr03g0093921' => 'han', 'HanXRQChr04g0120001' => 'han', 'HanXRQChr04g0122561' => 'han', 'HanXRQChr09g0246851' => 'han', 'HanXRQChr10g0293311' => 'han', 'HanXRQChr13g0425231' => 'han', 'HanXRQChr16g0532571' => 'han', 'Haze_09050' => 'cav', 'Haze_15715' => 'cav', 'Haze_15716' => 'cav', 'Haze_16803' => 'cav', 'Haze_16850' => 'cav', 'Hma1.2p1_0301F.1_g118655' => 'hma', 'Hma1.2p1_0309F.1_g120590' => 'hma', 'Hma1.2p1_0936F.1_g238900' => 'hma', 'Hma1.2p1_3552F.1_g336740' => 'hma', 'HPP92_003520' => 'vpl', 'HPP92_006628' => 'vpl', 'HPP92_006645' => 'vpl', 'HPP92_014669' => 'vpl', 'HPP92_015077' => 'vpl', 'Hund16742' => 'sun', 'Hund17022' => 'sun', 'Lalb_Chr02g0152131' => 'lal', 'Lalb_Chr05g0225371' => 'lal', 'Lalb_Chr07g0189841' => 'lal', 'Lalb_Chr07g0192961' => 'lal', 'Lalb_Chr12g0208221' => 'lal', 'Lalb_Chr13g0291211' => 'lal', 'Lalb_Chr13g0291781' => 'lal', 'Lalb_Chr18g0044651' => 'lal', 'Lalb_Chr21g0313731' => 'lal', 'Lj1g0022533' => 'lja', 'Lj2A18T50' => 'lonja', 'Lj2A92G93' => 'lonja', 'Lj3A965T73' => 'lonja', 'Lj3g0000673' => 'lja', 'Lj3g0002666' => 'lja', 'Lj4g0016985' => 'lja', 'Lj5g0003625' => 'lja', 'Lj7A529G36' => 'lonja', 'Lj9A569T49' => 'lonja', 'Lj9A604T63' => 'lonja', 'Lsat_1_v5_gn_3_132060' => 'lsa', 'Lsat_1_v5_gn_4_68941' => 'lsa', 'Lsat_1_v5_gn_5_95580' => 'lsa', 'Lsat_1_v5_gn_7_161' => 'lsa', 'Lsat_1_v5_gn_7_7041' => 'lsa', 'Lsat_1_v5_gn_9_33481' => 'lsa', 'Lsat_1_v5_gn_9_68260' => 'lsa', 'Manes.01G073100' => 'mes', 'Manes.01G266300' => 'mes', 'Manes.02G033300' => 'mes', 'Manes.05G017900' => 'mes', 'Manes.05G046100' => 'mes', 'Manes.08G080900' => 'mes', 'Manes.10G049400' => 'mes', 'Mapoly0009s0186' => 'mpo', 'Mapoly0036s0118' => 'mpo', 'Mapoly0101s0046' => 'mpo', 'MBI04_g30218_MAGBIO' => 'mbi', 'MBI04_g35564_MAGBIO' => 'mbi', 'MBI12_g34011_MAGBIO' => 'mbi', 'MBI14_g04655_MAGBIO' => 'mbi', 'MCO07G653' => 'mco', 'MCO10G173' => 'mco', 'MD01G1087100' => 'mdo', 'MD01G1104200' => 'mdo', 'MD02G1205100' => 'mdo', 'MD04G1079200' => 'mdo', 'MD04G1131400' => 'mdo', 'MD07G1121600' => 'mdo', 'MD07G1157300' => 'mdo', 'MD07G1171000' => 'mdo', 'MD12G1144500' => 'mdo', 'Medtr1g094610' => 'mtr', 'Medtr4g021795' => 'mtr', 'Medtr4g023760' => 'mtr', 'Medtr7g118050' => 'mtr', 'MELO3C005582.2' => 'cme', 'MELO3C005989.2' => 'cme', 'MELO3C006192.2' => 'cme', 'MELO3C009248.2' => 'cme', 'MELO3C019817.2' => 'cme', 'Migut.B01625' => 'egut', 'Migut.B01915' => 'egut', 'Migut.F01721' => 'egut', 'Migut.J00314' => 'egut', 'MSTRG.20742' => 'ama', 'MSTRG.8134' => 'ama', 'Nitab4.5_0000096g0010' => 'nta', 'Nitab4.5_0000202g0030' => 'nta', 'Nitab4.5_0000216g0370' => 'nta', 'Nitab4.5_0000457g0230' => 'nta', 'Nitab4.5_0001702g0170' => 'nta', 'Nitab4.5_0003607g0010' => 'nta', 'Nitab4.5_0004917g0020' => 'nta', 'Nitab4.5_0007059g0010' => 'nta', 'Nitab4.5_0007184g0010' => 'nta', 'Nitab4.5_0007346g0020' => 'nta', 'Nn1g00410' => 'nnu', 'Nn1g01252' => 'nnu', 'Nn2g11168' => 'nnu', 'Nn2g13403' => 'nnu', 'Nn2g13760' => 'nnu', 'Nn4g26380' => 'nnu', 'Oeu000806.2' => 'oeu', 'Oeu005788.1' => 'oeu', 'Oeu006900.3' => 'oeu', 'Oeu007797.1' => 'oeu', 'Oeu011932.1' => 'oeu', 'Oeu022739.1' => 'oeu', 'Oeu037918.1' => 'oeu', 'Oeu055490.2' => 'oeu', 'Os01g0844400' => 'osa', 'Os02g0819100' => 'osa', 'Os03g0804300' => 'osa', 'Os05g0458000' => 'osa', 'Os07g0467800' => 'osa', 'Os12g0602200' => 'osa', 'Peaxi162Scf00013g03444' => 'pax', 'Peaxi162Scf00094g01120' => 'pax', 'Peaxi162Scf00191g01211' => 'pax', 'Peaxi162Scf00238g01110' => 'pax', 'Peaxi162Scf00330g00719' => 'pax', 'Peaxi162Scf00627g00018' => 'pax', 'PGR031G2686' => 'pgr', 'PGR042G0809' => 'pgr', 'PGR142G0193' => 'pgr', 'PGSC0003DMG400011066' => 'stu', 'PGSC0003DMG400012041' => 'stu', 'PGSC0003DMG400013678' => 'stu', 'PGSC0003DMG400023477' => 'stu', 'PGSC0003DMG400025956' => 'stu', 'PGSC0003DMG401019151' => 'stu', 'Phvul.006G116400' => 'pvu', 'Phvul.007G097300' => 'pvu', 'Phvul.010G015000' => 'pvu', 'Phvul.010G083900' => 'pvu', 'Potri.001G117100' => 'ptr', 'Potri.002G147300' => 'ptr', 'Potri.003G115600' => 'ptr', 'Potri.006G087400' => 'ptr', 'Potri.010G226100' => 'ptr', 'Potri.014G069200' => 'ptr', 'Potri.014G104000' => 'ptr', 'Potri.016G100200' => 'ptr', 'Pp3c10_20450' => 'ppa', 'Pp3c1_42400' => 'ppa', 'Pp3c3_24390' => 'ppa', 'Pp3c3_2860' => 'ppa', 'PRCOL_00003193' => 'pco', 'Prupe.2G144500' => 'ppe', 'Prupe.2G195700' => 'ppe', 'Prupe.2G209800' => 'ppe', 'Prupe.5G080000' => 'ppe', 'Prupe.6G257900' => 'ppe', 'Psat3g001160' => 'psa', 'Psat6g181880' => 'psa', 'Psat7g233720' => 'psa', 'PSO063G7587' => 'pso', 'PSO339G2145' => 'pso', 'PSO339G3369' => 'pso', 'PSO478G2747' => 'pso', 'PSO513G0140' => 'pso', 'PSO782G1614' => 'pso', 'PSO782G4889' => 'pso', 'PSO782G5485' => 'pso', 'PSO801G0241' => 'pso', 'QL07p048854' => 'qlo', 'QL08p046745' => 'qlo', 'QL08p052606' => 'qlo', 'QL08p053414' => 'qlo', 'QL08p054868' => 'qlo', 'RcHm_v2.0_Chr1g0350251' => 'rch', 'RcHm_v2.0_Chr1g0360851' => 'rch', 'RcHm_v2.0_Chr1g0362791' => 'rch', 'RcHm_v2.0_Chr3g0466281' => 'rch', 'RcHm_v2.0_Chr7g0201481' => 'rch', 'Rhsim01G0148600' => 'rsi', 'Rhsim05G0194400' => 'rsi', 'Rhsim07G0000700' => 'rsi', 'Rhsim07G0000800' => 'rsi', 'Rhsim07G0027900' => 'rsi', 'Rhsim09G0149500' => 'rsi', 'RhsimUnG0186900' => 'rsi', 'Sabra01G0089900' => 'sbr', 'Sabra02G0114700' => 'sbr', 'Sabra02G0116300' => 'sbr', 'Sabra03G0080100' => 'sbr', 'Sabra08G0024300' => 'sbr', 'Sabra10G0174300' => 'sbr', 'Sabra14G0048900' => 'sbr', 'Sabra14G0076500' => 'sbr', 'SalBow5G2513' => 'sbo', 'Sc01g0002300' => 'sci', 'Sc01g0004450' => 'sci', 'Sc06g0001680' => 'sci', 'Sc23g0003580' => 'sci', 'Sed0000913' => 'sed', 'Sed0001655' => 'sed', 'Sed0007745' => 'sed', 'Sed0010951' => 'sed', 'Sed0017599' => 'sed', 'Sed0021405' => 'sed', 'Sed0022810' => 'sed', 'SEGI_07099' => 'sgi', 'SEGI_11931' => 'sgi', 'SEGI_13187' => 'sgi', 'SEGI_29958' => 'sgi', 'SEGI_36351' => 'sgi', 'SGA_v2.0_scaffold126G33770' => 'sas', 'SGA_v2.0_scaffold153G37003' => 'sas', 'SGA_v2.0_scaffold2G01359' => 'sas', 'SGA_v2.0_scaffold5G03064' => 'sas', 'SGA_v2.0_scaffold95G28903' => 'sas', 'SHI12701' => 'shi', 'SHI26410' => 'shi', 'SHI38997' => 'shi', 'SHI53759' => 'shi', 'SHI53886' => 'shi', 'SHI54714' => 'shi', 'SMO011G0041' => 'smo', 'SMO146G0251' => 'smo', 'SMO160G0004' => 'smo', 'SMO174G0057' => 'smo', 'SMO244G0089' => 'smo', 'SMO296G0011' => 'smo', 'Solyc01g091280.3' => 'sly', 'Solyc05g047610.3' => 'sly', 'Solyc05g047640.3' => 'sly', 'Solyc05g055630.3' => 'sly', 'Solyc10g018160.2' => 'sly', 'Solyc10g084820.2' => 'sly', 'Solyc10g086565.2' => 'sly', 'Sopen01g037030' => 'spe', 'Sopen05g027920' => 'spe', 'Sopen05g034070' => 'spe', 'Sopen10g007260' => 'spe', 'Sopen10g034260' => 'spe', 'Sopen10g035950' => 'spe', 'Sp3g07710' => 'spa', 'Sp4g27420' => 'spa', 'Sp5g02450' => 'spa', 'Sp6g01280' => 'spa', 'Sp6g38480' => 'spa', 'Sp7g20780' => 'spa', 'TAR374G1413' => 'tar', 'TAR623G1777' => 'tar', 'TAR629G2370' => 'tar', 'TAR633G1759' => 'tar', 'TAR636G3387' => 'tar', 'THA.LOC104802447' => 'tha', 'THA.LOC104813916' => 'tha', 'THA.LOC104816423' => 'tha', 'THA.LOC104817246' => 'tha', 'THA.LOC104825895' => 'tha', 'Thecc.01G335200' => 'tca', 'Thecc.01G377400' => 'tca', 'Thecc.03G262200' => 'tca', 'Thecc.05G036800' => 'tca', 'Thecc.10G080500' => 'tca', 'Thecc.10G080800' => 'tca', 'Thhalv10001560m.g' => 'esa', 'Thhalv10006120m.g' => 'esa', 'Thhalv10014375m.g' => 'esa', 'Thhalv10021264m.g' => 'esa', 'Thhalv10028856m.g' => 'esa', 'TPR.G1914' => 'tpr', 'TPR.G4757' => 'tpr', 'TPR.G5595' => 'tpr', 'TWI14G0952' => 'twi', 'TWI14G1307' => 'twi', 'TWI38G2143' => 'twi', 'TWI59G0826' => 'twi', 'TWI77G0527' => 'twi', 'TWI81G0150' => 'twi', 'unitig_21.g21018' => 'ugi', 'unitig_26.g9725' => 'ugi', 'unitig_744.g24653' => 'ugi', 'unitig_749.g13778' => 'ugi', 'unitig_899.g15035' => 'ugi', 'vmacro04296' => 'vma', 'vmacro04852' => 'vma', 'vmacro13404' => 'vma', 'vmacro20169' => 'vma', 'vmacro21014' => 'vma', 'VMungo0331G0237' => 'vmu', 'VMungo0331G0706' => 'vmu', 'VMungo0331G1361' => 'vmu', 'VMungo0331G1489' => 'vmu', 'VMungo0540G1037' => 'vmu', 'VMungo0720G2487' => 'vmu', 'VMungo0720G2721' => 'vmu', 'Zm00001eb086860' => 'zma', 'Zm00001eb104760' => 'zma', 'Zm00001eb148220' => 'zma', 'Zm00001eb259030' => 'zma', 'Zm00001eb289590' => 'zma', 'Zm00001eb420150' => 'zma' ), 'gf_id' => 'HOM05D000968', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000968' ), 'data_identifier' => 'HOM05D000968', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000968', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p31690' => 'bna', 'A03p36040' => 'bna', 'A03p53730' => 'bna', 'A04p01410' => 'bna', 'A05p05420' => 'bna', 'A05p39630' => 'bna', 'A05p39640' => 'bna', 'A09p00970' => 'bna', 'A09p53060' => 'bna', 'A10p31890' => 'bna', 'Aa31LG10G15040' => 'aar', 'Aa31LG1G21090' => 'aar', 'Aa31LG1G26900' => 'aar', 'Aa31LG3G1820' => 'aar', 'Aa31LG5G1100' => 'aar', 'Aa31LG6G4740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2265' => 'aag', 'Actinidia07998' => 'ach', 'Actinidia11266' => 'ach', 'Actinidia12682' => 'ach', 'Actinidia26479' => 'ach', 'Actinidia31406' => 'ach', 'Actinidia32437' => 'ach', 'Actinidia38862' => 'ach', 'Ah.05g174230' => 'amhyb', 'Ah.05g179070' => 'amhyb', 'Ah.05g179090' => 'amhyb', 'Ah.12g059950' => 'amhyb', 'AL3G20480' => 'aly', 'AL4G44520' => 'aly', 'AL5G43110' => 'aly', 'AL6G13890' => 'aly', 'AL6G52620' => 'aly', 'AL7G30830' => 'aly', 'Aqoxy1G00899' => 'aox', 'Aqoxy5G04333' => 'aox', 'Aqoxy7G00641' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3IZ0NN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4EF6AW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W9P8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79GA3M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C43NQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFCU6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G95YVJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCHK29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LU1UG8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX91RN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGB4B1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8DA0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9H7JI' => 'arhy', 'AT3G09320' => 'ath', 'AT3G60800' => 'ath', 'AT4G00840' => 'ath', 'AT4G22750' => 'ath', 'AT5G04270' => 'ath', 'ATR0090G003' => 'atr', 'ATR0559G349' => 'atr', 'ATR0680G261' => 'atr', 'ATR0810G048' => 'atr', 'Atru.chr12.831' => 'acertr', 'Atru.chr5.303' => 'acertr', 'Atru.chr5.748' => 'acertr', 'Atru.chr8.1999' => 'acertr', 'Atru.chr9.1436' => 'acertr', 'AUR62004211' => 'cqu', 'AUR62004548' => 'cqu', 'AUR62013637' => 'cqu', 'AUR62022662' => 'cqu', 'AUR62025777' => 'cqu', 'AUR62042386' => 'cqu', 'BcaB01g02310' => 'bca', 'BcaB01g06062' => 'bca', 'BcaB02g08975' => 'bca', 'BcaB02g08980' => 'bca', 'BcaC01g04228' => 'bca', 'BcaC01g06830' => 'bca', 'BcaC02g10186' => 'bca', 'BcaC02g12214' => 'bca', 'BcaC04g24101' => 'bca', 'BcaC05g29520' => 'bca', 'BcaC05g29661' => 'bca', 'BcaC06g32130' => 'bca', 'BcaC06g32131' => 'bca', 'BcaC07g40601' => 'bca', 'BcaC07g42641' => 'bca', 'BcaNung01038' => 'bca', 'BcaNung01676' => 'bca', 'BcaNung02480' => 'bca', 'BcaNung07376' => 'bca', 'BolC3t16146H' => 'bol', 'BolC3t16637H' => 'bol', 'BolC4t22257H' => 'bol', 'BolC4t24728H' => 'bol', 'BolC5t34517H' => 'bol', 'BolC7t45703H' => 'bol', 'BolC8t51166H' => 'bol', 'BolC9t53038H' => 'bol', 'BolC9t60000H' => 'bol', 'BraA01t01345Z' => 'bra', 'BraA01t01346Z' => 'bra', 'BraA01t01348Z' => 'bra', 'BraA03t12347Z' => 'bra', 'BraA03t12775Z' => 'bra', 'BraA03t14439Z' => 'bra', 'BraA04t15860Z' => 'bra', 'BraA05t19511Z' => 'bra', 'BraA05t22746Z' => 'bra', 'BraA09t35767Z' => 'bra', 'BraA09t40732Z' => 'bra', 'BraA10t45233Z' => 'bra', 'C03p38720' => 'bna', 'C03p43680' => 'bna', 'C04p06350' => 'bna', 'C04p31800' => 'bna', 'C05p58680' => 'bna', 'C07p52110' => 'bna', 'C08p35760' => 'bna', 'C09p01050' => 'bna', 'C09p72600' => 'bna', 'CAN.G106.2' => 'can', 'CAN.G1482.1' => 'can', 'CAN.G324.12' => 'can', 'CAN.G388.20' => 'can', 'CAN.G412.7' => 'can', 'CAN.G694.32' => 'can', 'CAN.G92.12' => 'can', 'CANSAT11G2353' => 'cansat', 'CANSAT21G1398' => 'cansat', 'CANSAT56G2456' => 'cansat', 'CANSAT56G3031' => 'cansat', 'CANSAT56G4539' => 'cansat', 'CARHR083680' => 'chi', 'CARHR171190' => 'chi', 'CARHR209010' => 'chi', 'CARHR229680' => 'chi', 'CARHR249490' => 'chi', 'Carub.0003s0844' => 'cru', 'Carub.0005s2755' => 'cru', 'Carub.0006s0322' => 'cru', 'Carub.0006s3586' => 'cru', 'Carub.0007s1855' => 'cru', 'Ca_07808_v3' => 'car', 'Ca_09535_v3' => 'car', 'Ca_10548_v3' => 'car', 'Ca_19913_v3' => 'car', 'Ca_19916_v3' => 'car', 'Ca_19975_v3' => 'car', 'CBR_g22876' => 'cbr', 'CBR_g22879' => 'cbr', 'CBR_g38491' => 'cbr', 'CBR_g54185' => 'cbr', 'CBR_g54190' => 'cbr', 'Cc02_g11020' => 'ccan', 'Cc02_g23920' => 'ccan', 'Cc02_g39860' => 'ccan', 'Cc02_g39870' => 'ccan', 'Cc03_g06760' => 'ccan', 'Cc06_g02450' => 'ccan', 'Cc09_g09450' => 'ccan', 'CDE02G1959' => 'cde', 'CDE04G0600' => 'cde', 'CDE07G1996' => 'cde', 'CDE07G2078' => 'cde', 'CDE11G0611' => 'cde', 'Cfa001683' => 'cfa', 'Cfa001734' => 'cfa', 'Cfa001737' => 'cfa', 'Cfa003751' => 'cfa', 'Cfa012019' => 'cfa', 'Cfa017353' => 'cfa', 'Cfa017732' => 'cfa', 'Cfa022464' => 'cfa', 'Ciclev10012400m.g' => 'ccl', 'Ciclev10021242m.g' => 'ccl', 'Ciclev10021302m.g' => 'ccl', 'Ciclev10021463m.g' => 'ccl', 'Ciclev10032359m.g' => 'ccl', 'CiPaw.01G081000' => 'cil', 'CiPaw.01G262500' => 'cil', 'CiPaw.01G269800' => 'cil', 'CiPaw.02G168400' => 'cil', 'CiPaw.05G119500' => 'cil', 'CiPaw.11G147300' => 'cil', 'ClCG01G003630' => 'cla', 'ClCG05G000510' => 'cla', 'ClCG05G002300' => 'cla', 'ClCG08G007650' => 'cla', 'ClCG10G021250' => 'cla', 'COL.COLO4_06218' => 'col', 'COL.COLO4_12538' => 'col', 'COL.COLO4_14775' => 'col', 'COL.COLO4_23875' => 'col', 'Cpa.g.sc141.16' => 'cpa', 'Cpa.g.sc169.16' => 'cpa', 'Cpa.g.sc244.4' => 'cpa', 'Cpa.g.sc244.5' => 'cpa', 'Cpa.g.sc29.87' => 'cpa', 'Cpa.g.sc53.115' => 'cpa', 'Cre03.g207502' => 'cre', 'Cre06.g277000' => 'cre', 'Cre09.g394050' => 'cre', 'CsaV3_3G007680' => 'csa', 'CsaV3_3G009710' => 'csa', 'CsaV3_3G034790' => 'csa', 'CsaV3_5G003750' => 'csa', 'CsaV3_6G036620' => 'csa', 'CSS0002288' => 'camsi', 'CSS0011250' => 'camsi', 'CSS0021619' => 'camsi', 'CSS0046701' => 'camsi', 'DCAR_006420' => 'dca', 'DCAR_006865' => 'dca', 'DCAR_008558' => 'dca', 'DCAR_028754' => 'dca', 'DCAR_028755' => 'dca', 'Dinv31218' => 'din', 'Dinv32371' => 'din', 'Dinv34250' => 'din', 'Dinv37156' => 'din', 'Dinv43704' => 'din', 'Duzib093G1811' => 'dzi', 'Duzib106G1622' => 'dzi', 'Duzib114G0504' => 'dzi', 'Duzib128G0338' => 'dzi', 'Duzib128G1577' => 'dzi', 'Duzib133G0104' => 'dzi', 'Duzib133G1080' => 'dzi', 'Duzib138G0324' => 'dzi', 'Duzib138G0394' => 'dzi', 'Duzib205G0122' => 'dzi', 'Duzib268G1020' => 'dzi', 'Duzib268G1359' => 'dzi', 'ECA232G3929' => 'eca', 'ECA236G2210' => 'eca', 'ECA236G2287' => 'eca', 'ECA240G4568' => 'eca', 'ECA247G0894' => 'eca', 'EL10Ac1g00200' => 'bvu', 'EL10Ac1g00886' => 'bvu', 'EL10As1g23091' => 'bvu', 'EL10As1g23092' => 'bvu', 'Eucgr.A01284' => 'egr', 'Eucgr.A01285' => 'egr', 'Eucgr.D02456' => 'egr', 'Eucgr.E00018' => 'egr', 'Eucgr.E01439' => 'egr', 'Eucgr.G02859' => 'egr', 'FAN01G0168' => 'fan', 'FAN01G0453' => 'fan', 'FAN01G2761' => 'fan', 'FAN02G1239' => 'fan', 'FAN03G0645' => 'fan', 'FAN03G2707' => 'fan', 'FAN03G2978' => 'fan', 'FAN04G0227' => 'fan', 'FAN06G0091' => 'fan', 'FAN06G1418' => 'fan', 'FAN06G1512' => 'fan', 'FAN06G1986' => 'fan', 'FAN06G2905' => 'fan', 'FAN06G4325' => 'fan', 'FAN08G0033' => 'fan', 'FAN09G0642' => 'fan', 'FAN10G1763' => 'fan', 'FAN10G2026' => 'fan', 'FAN10G2513' => 'fan', 'FAN10G3402' => 'fan', 'FAN10G3564' => 'fan', 'FAN10G3987' => 'fan', 'FAN13G1490' => 'fan', 'FAN14G5857' => 'fan', 'FAN18G1188' => 'fan', 'FvH4_5g00750' => 'fve', 'FvH4_6g13410' => 'fve', 'FvH4_7g11740' => 'fve', 'FvH4_7g17410' => 'fve', 'FvH4_7g18860' => 'fve', 'Glyma.01G099100' => 'gma', 'Glyma.01G142300' => 'gma', 'Glyma.03G025500' => 'gma', 'Glyma.03G069700' => 'gma', 'Glyma.03G260000' => 'gma', 'Glyma.09G269800' => 'gma', 'Glyma.10G208700' => 'gma', 'Glyma.18G220400' => 'gma', 'Glyma.20G182000' => 'gma', 'Gohir.A01G221726' => 'ghi', 'Gohir.A07G134600' => 'ghi', 'Gohir.A07G146000' => 'ghi', 'Gohir.A08G173900' => 'ghi', 'Gohir.A09G194900' => 'ghi', 'Gohir.A10G204100' => 'ghi', 'Gohir.A11G080600' => 'ghi', 'Gohir.A11G327500' => 'ghi', 'Gohir.A12G101800' => 'ghi', 'Gohir.D01G211200' => 'ghi', 'Gohir.D07G139200' => 'ghi', 'Gohir.D07G152100' => 'ghi', 'Gohir.D08G192600' => 'ghi', 'Gohir.D09G189200' => 'ghi', 'Gohir.D10G212000' => 'ghi', 'Gohir.D11G085200' => 'ghi', 'Gohir.D11G346400' => 'ghi', 'Gohir.D12G104800' => 'ghi', 'Gorai.001G151300' => 'gra', 'Gorai.001G174100' => 'gra', 'Gorai.002G257000' => 'gra', 'Gorai.004G202600' => 'gra', 'Gorai.007G090900' => 'gra', 'Gorai.007G376700' => 'gra', 'Gorai.008G114100' => 'gra', 'Gorai.011G237900' => 'gra', 'GSVIVG01005450001' => 'vvi', 'GSVIVG01016232001' => 'vvi', 'GSVIVG01026157001' => 'vvi', 'GSVIVG01027419001' => 'vvi', 'GSVIVG01027631001' => 'vvi', 'GSVIVG01034143001' => 'vvi', 'HanXRQChr03g0093921' => 'han', 'HanXRQChr04g0120001' => 'han', 'HanXRQChr04g0122561' => 'han', 'HanXRQChr09g0246851' => 'han', 'HanXRQChr10g0293311' => 'han', 'HanXRQChr13g0425231' => 'han', 'HanXRQChr16g0532571' => 'han', 'Haze_09050' => 'cav', 'Haze_15715' => 'cav', 'Haze_15716' => 'cav', 'Haze_16803' => 'cav', 'Haze_16850' => 'cav', 'Hma1.2p1_0301F.1_g118655' => 'hma', 'Hma1.2p1_0309F.1_g120590' => 'hma', 'Hma1.2p1_0936F.1_g238900' => 'hma', 'Hma1.2p1_3552F.1_g336740' => 'hma', 'HPP92_003520' => 'vpl', 'HPP92_006628' => 'vpl', 'HPP92_006645' => 'vpl', 'HPP92_014669' => 'vpl', 'HPP92_015077' => 'vpl', 'Hund16742' => 'sun', 'Hund17022' => 'sun', 'Lalb_Chr02g0152131' => 'lal', 'Lalb_Chr05g0225371' => 'lal', 'Lalb_Chr07g0189841' => 'lal', 'Lalb_Chr07g0192961' => 'lal', 'Lalb_Chr12g0208221' => 'lal', 'Lalb_Chr13g0291211' => 'lal', 'Lalb_Chr13g0291781' => 'lal', 'Lalb_Chr18g0044651' => 'lal', 'Lalb_Chr21g0313731' => 'lal', 'Lj1g0022533' => 'lja', 'Lj2A18T50' => 'lonja', 'Lj2A92G93' => 'lonja', 'Lj3A965T73' => 'lonja', 'Lj3g0000673' => 'lja', 'Lj3g0002666' => 'lja', 'Lj4g0016985' => 'lja', 'Lj5g0003625' => 'lja', 'Lj7A529G36' => 'lonja', 'Lj9A569T49' => 'lonja', 'Lj9A604T63' => 'lonja', 'Lsat_1_v5_gn_3_132060' => 'lsa', 'Lsat_1_v5_gn_4_68941' => 'lsa', 'Lsat_1_v5_gn_5_95580' => 'lsa', 'Lsat_1_v5_gn_7_161' => 'lsa', 'Lsat_1_v5_gn_7_7041' => 'lsa', 'Lsat_1_v5_gn_9_33481' => 'lsa', 'Lsat_1_v5_gn_9_68260' => 'lsa', 'Manes.01G073100' => 'mes', 'Manes.01G266300' => 'mes', 'Manes.02G033300' => 'mes', 'Manes.05G017900' => 'mes', 'Manes.05G046100' => 'mes', 'Manes.08G080900' => 'mes', 'Manes.10G049400' => 'mes', 'Mapoly0009s0186' => 'mpo', 'Mapoly0036s0118' => 'mpo', 'Mapoly0101s0046' => 'mpo', 'MBI04_g30218_MAGBIO' => 'mbi', 'MBI04_g35564_MAGBIO' => 'mbi', 'MBI12_g34011_MAGBIO' => 'mbi', 'MBI14_g04655_MAGBIO' => 'mbi', 'MCO07G653' => 'mco', 'MCO10G173' => 'mco', 'MD01G1087100' => 'mdo', 'MD01G1104200' => 'mdo', 'MD02G1205100' => 'mdo', 'MD04G1079200' => 'mdo', 'MD04G1131400' => 'mdo', 'MD07G1121600' => 'mdo', 'MD07G1157300' => 'mdo', 'MD07G1171000' => 'mdo', 'MD12G1144500' => 'mdo', 'Medtr1g094610' => 'mtr', 'Medtr4g021795' => 'mtr', 'Medtr4g023760' => 'mtr', 'Medtr7g118050' => 'mtr', 'MELO3C005582.2' => 'cme', 'MELO3C005989.2' => 'cme', 'MELO3C006192.2' => 'cme', 'MELO3C009248.2' => 'cme', 'MELO3C019817.2' => 'cme', 'Migut.B01625' => 'egut', 'Migut.B01915' => 'egut', 'Migut.F01721' => 'egut', 'Migut.J00314' => 'egut', 'MSTRG.20742' => 'ama', 'MSTRG.8134' => 'ama', 'Nitab4.5_0000096g0010' => 'nta', 'Nitab4.5_0000202g0030' => 'nta', 'Nitab4.5_0000216g0370' => 'nta', 'Nitab4.5_0000457g0230' => 'nta', 'Nitab4.5_0001702g0170' => 'nta', 'Nitab4.5_0003607g0010' => 'nta', 'Nitab4.5_0004917g0020' => 'nta', 'Nitab4.5_0007059g0010' => 'nta', 'Nitab4.5_0007184g0010' => 'nta', 'Nitab4.5_0007346g0020' => 'nta', 'Nn1g00410' => 'nnu', 'Nn1g01252' => 'nnu', 'Nn2g11168' => 'nnu', 'Nn2g13403' => 'nnu', 'Nn2g13760' => 'nnu', 'Nn4g26380' => 'nnu', 'Oeu000806.2' => 'oeu', 'Oeu005788.1' => 'oeu', 'Oeu006900.3' => 'oeu', 'Oeu007797.1' => 'oeu', 'Oeu011932.1' => 'oeu', 'Oeu022739.1' => 'oeu', 'Oeu037918.1' => 'oeu', 'Oeu055490.2' => 'oeu', 'Os01g0844400' => 'osa', 'Os02g0819100' => 'osa', 'Os03g0804300' => 'osa', 'Os05g0458000' => 'osa', 'Os07g0467800' => 'osa', 'Os12g0602200' => 'osa', 'Peaxi162Scf00013g03444' => 'pax', 'Peaxi162Scf00094g01120' => 'pax', 'Peaxi162Scf00191g01211' => 'pax', 'Peaxi162Scf00238g01110' => 'pax', 'Peaxi162Scf00330g00719' => 'pax', 'Peaxi162Scf00627g00018' => 'pax', 'PGR031G2686' => 'pgr', 'PGR042G0809' => 'pgr', 'PGR142G0193' => 'pgr', 'PGSC0003DMG400011066' => 'stu', 'PGSC0003DMG400012041' => 'stu', 'PGSC0003DMG400013678' => 'stu', 'PGSC0003DMG400023477' => 'stu', 'PGSC0003DMG400025956' => 'stu', 'PGSC0003DMG401019151' => 'stu', 'Phvul.006G116400' => 'pvu', 'Phvul.007G097300' => 'pvu', 'Phvul.010G015000' => 'pvu', 'Phvul.010G083900' => 'pvu', 'Potri.001G117100' => 'ptr', 'Potri.002G147300' => 'ptr', 'Potri.003G115600' => 'ptr', 'Potri.006G087400' => 'ptr', 'Potri.010G226100' => 'ptr', 'Potri.014G069200' => 'ptr', 'Potri.014G104000' => 'ptr', 'Potri.016G100200' => 'ptr', 'Pp3c10_20450' => 'ppa', 'Pp3c1_42400' => 'ppa', 'Pp3c3_24390' => 'ppa', 'Pp3c3_2860' => 'ppa', 'PRCOL_00003193' => 'pco', 'Prupe.2G144500' => 'ppe', 'Prupe.2G195700' => 'ppe', 'Prupe.2G209800' => 'ppe', 'Prupe.5G080000' => 'ppe', 'Prupe.6G257900' => 'ppe', 'Psat3g001160' => 'psa', 'Psat6g181880' => 'psa', 'Psat7g233720' => 'psa', 'PSO063G7587' => 'pso', 'PSO339G2145' => 'pso', 'PSO339G3369' => 'pso', 'PSO478G2747' => 'pso', 'PSO513G0140' => 'pso', 'PSO782G1614' => 'pso', 'PSO782G4889' => 'pso', 'PSO782G5485' => 'pso', 'PSO801G0241' => 'pso', 'QL07p048854' => 'qlo', 'QL08p046745' => 'qlo', 'QL08p052606' => 'qlo', 'QL08p053414' => 'qlo', 'QL08p054868' => 'qlo', 'RcHm_v2.0_Chr1g0350251' => 'rch', 'RcHm_v2.0_Chr1g0360851' => 'rch', 'RcHm_v2.0_Chr1g0362791' => 'rch', 'RcHm_v2.0_Chr3g0466281' => 'rch', 'RcHm_v2.0_Chr7g0201481' => 'rch', 'Rhsim01G0148600' => 'rsi', 'Rhsim05G0194400' => 'rsi', 'Rhsim07G0000700' => 'rsi', 'Rhsim07G0000800' => 'rsi', 'Rhsim07G0027900' => 'rsi', 'Rhsim09G0149500' => 'rsi', 'RhsimUnG0186900' => 'rsi', 'Sabra01G0089900' => 'sbr', 'Sabra02G0114700' => 'sbr', 'Sabra02G0116300' => 'sbr', 'Sabra03G0080100' => 'sbr', 'Sabra08G0024300' => 'sbr', 'Sabra10G0174300' => 'sbr', 'Sabra14G0048900' => 'sbr', 'Sabra14G0076500' => 'sbr', 'SalBow5G2513' => 'sbo', 'Sc01g0002300' => 'sci', 'Sc01g0004450' => 'sci', 'Sc06g0001680' => 'sci', 'Sc23g0003580' => 'sci', 'Sed0000913' => 'sed', 'Sed0001655' => 'sed', 'Sed0007745' => 'sed', 'Sed0010951' => 'sed', 'Sed0017599' => 'sed', 'Sed0021405' => 'sed', 'Sed0022810' => 'sed', 'SEGI_07099' => 'sgi', 'SEGI_11931' => 'sgi', 'SEGI_13187' => 'sgi', 'SEGI_29958' => 'sgi', 'SEGI_36351' => 'sgi', 'SGA_v2.0_scaffold126G33770' => 'sas', 'SGA_v2.0_scaffold153G37003' => 'sas', 'SGA_v2.0_scaffold2G01359' => 'sas', 'SGA_v2.0_scaffold5G03064' => 'sas', 'SGA_v2.0_scaffold95G28903' => 'sas', 'SHI12701' => 'shi', 'SHI26410' => 'shi', 'SHI38997' => 'shi', 'SHI53759' => 'shi', 'SHI53886' => 'shi', 'SHI54714' => 'shi', 'SMO011G0041' => 'smo', 'SMO146G0251' => 'smo', 'SMO160G0004' => 'smo', 'SMO174G0057' => 'smo', 'SMO244G0089' => 'smo', 'SMO296G0011' => 'smo', 'Solyc01g091280.3' => 'sly', 'Solyc05g047610.3' => 'sly', 'Solyc05g047640.3' => 'sly', 'Solyc05g055630.3' => 'sly', 'Solyc10g018160.2' => 'sly', 'Solyc10g084820.2' => 'sly', 'Solyc10g086565.2' => 'sly', 'Sopen01g037030' => 'spe', 'Sopen05g027920' => 'spe', 'Sopen05g034070' => 'spe', 'Sopen10g007260' => 'spe', 'Sopen10g034260' => 'spe', 'Sopen10g035950' => 'spe', 'Sp3g07710' => 'spa', 'Sp4g27420' => 'spa', 'Sp5g02450' => 'spa', 'Sp6g01280' => 'spa', 'Sp6g38480' => 'spa', 'Sp7g20780' => 'spa', 'TAR374G1413' => 'tar', 'TAR623G1777' => 'tar', 'TAR629G2370' => 'tar', 'TAR633G1759' => 'tar', 'TAR636G3387' => 'tar', 'THA.LOC104802447' => 'tha', 'THA.LOC104813916' => 'tha', 'THA.LOC104816423' => 'tha', 'THA.LOC104817246' => 'tha', 'THA.LOC104825895' => 'tha', 'Thecc.01G335200' => 'tca', 'Thecc.01G377400' => 'tca', 'Thecc.03G262200' => 'tca', 'Thecc.05G036800' => 'tca', 'Thecc.10G080500' => 'tca', 'Thecc.10G080800' => 'tca', 'Thhalv10001560m.g' => 'esa', 'Thhalv10006120m.g' => 'esa', 'Thhalv10014375m.g' => 'esa', 'Thhalv10021264m.g' => 'esa', 'Thhalv10028856m.g' => 'esa', 'TPR.G1914' => 'tpr', 'TPR.G4757' => 'tpr', 'TPR.G5595' => 'tpr', 'TWI14G0952' => 'twi', 'TWI14G1307' => 'twi', 'TWI38G2143' => 'twi', 'TWI59G0826' => 'twi', 'TWI77G0527' => 'twi', 'TWI81G0150' => 'twi', 'unitig_21.g21018' => 'ugi', 'unitig_26.g9725' => 'ugi', 'unitig_744.g24653' => 'ugi', 'unitig_749.g13778' => 'ugi', 'unitig_899.g15035' => 'ugi', 'vmacro04296' => 'vma', 'vmacro04852' => 'vma', 'vmacro13404' => 'vma', 'vmacro20169' => 'vma', 'vmacro21014' => 'vma', 'VMungo0331G0237' => 'vmu', 'VMungo0331G0706' => 'vmu', 'VMungo0331G1361' => 'vmu', 'VMungo0331G1489' => 'vmu', 'VMungo0540G1037' => 'vmu', 'VMungo0720G2487' => 'vmu', 'VMungo0720G2721' => 'vmu', 'Zm00001eb086860' => 'zma', 'Zm00001eb104760' => 'zma', 'Zm00001eb148220' => 'zma', 'Zm00001eb259030' => 'zma', 'Zm00001eb289590' => 'zma', 'Zm00001eb420150' => 'zma' ) $gf_id = 'HOM05D000968' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000968' ) $data_identifier = 'HOM05D000968' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 19, 'bol' => (int) 9, 'bra' => (int) 12, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 5, 'ccan' => (int) 7, 'cde' => (int) 5, 'cfa' => (int) 8, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 4, 'dca' => (int) 5, 'din' => (int) 5, 'dzi' => (int) 12, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 25, 'fve' => (int) 5, 'gma' => (int) 9, 'ghi' => (int) 18, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 7, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 5, 'sun' => (int) 2, 'lal' => (int) 9, 'lja' => (int) 5, 'lonja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 9, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 2, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 3, 'stu' => (int) 6, 'pvu' => (int) 4, 'ptr' => (int) 8, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 3, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 1, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 5, 'sas' => (int) 5, 'shi' => (int) 6, 'smo' => (int) 6, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 3, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420150' $species_info = array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ) $local_species = 'tha' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000968', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p31690' => 'bna', 'A03p36040' => 'bna', 'A03p53730' => 'bna', 'A04p01410' => 'bna', 'A05p05420' => 'bna', 'A05p39630' => 'bna', 'A05p39640' => 'bna', 'A09p00970' => 'bna', 'A09p53060' => 'bna', 'A10p31890' => 'bna', 'Aa31LG10G15040' => 'aar', 'Aa31LG1G21090' => 'aar', 'Aa31LG1G26900' => 'aar', 'Aa31LG3G1820' => 'aar', 'Aa31LG5G1100' => 'aar', 'Aa31LG6G4740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2265' => 'aag', 'Actinidia07998' => 'ach', 'Actinidia11266' => 'ach', 'Actinidia12682' => 'ach', 'Actinidia26479' => 'ach', 'Actinidia31406' => 'ach', 'Actinidia32437' => 'ach', 'Actinidia38862' => 'ach', 'Ah.05g174230' => 'amhyb', 'Ah.05g179070' => 'amhyb', 'Ah.05g179090' => 'amhyb', 'Ah.12g059950' => 'amhyb', 'AL3G20480' => 'aly', 'AL4G44520' => 'aly', 'AL5G43110' => 'aly', 'AL6G13890' => 'aly', 'AL6G52620' => 'aly', 'AL7G30830' => 'aly', 'Aqoxy1G00899' => 'aox', 'Aqoxy5G04333' => 'aox', 'Aqoxy7G00641' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3IZ0NN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4EF6AW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W9P8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79GA3M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C43NQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFCU6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G95YVJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCHK29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LU1UG8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX91RN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGB4B1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8DA0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9H7JI' => 'arhy', 'AT3G09320' => 'ath', 'AT3G60800' => 'ath', 'AT4G00840' => 'ath', 'AT4G22750' => 'ath', 'AT5G04270' => 'ath', 'ATR0090G003' => 'atr', 'ATR0559G349' => 'atr', 'ATR0680G261' => 'atr', 'ATR0810G048' => 'atr', 'Atru.chr12.831' => 'acertr', 'Atru.chr5.303' => 'acertr', 'Atru.chr5.748' => 'acertr', 'Atru.chr8.1999' => 'acertr', 'Atru.chr9.1436' => 'acertr', 'AUR62004211' => 'cqu', 'AUR62004548' => 'cqu', 'AUR62013637' => 'cqu', 'AUR62022662' => 'cqu', 'AUR62025777' => 'cqu', 'AUR62042386' => 'cqu', 'BcaB01g02310' => 'bca', 'BcaB01g06062' => 'bca', 'BcaB02g08975' => 'bca', 'BcaB02g08980' => 'bca', 'BcaC01g04228' => 'bca', 'BcaC01g06830' => 'bca', 'BcaC02g10186' => 'bca', 'BcaC02g12214' => 'bca', 'BcaC04g24101' => 'bca', 'BcaC05g29520' => 'bca', 'BcaC05g29661' => 'bca', 'BcaC06g32130' => 'bca', 'BcaC06g32131' => 'bca', 'BcaC07g40601' => 'bca', 'BcaC07g42641' => 'bca', 'BcaNung01038' => 'bca', 'BcaNung01676' => 'bca', 'BcaNung02480' => 'bca', 'BcaNung07376' => 'bca', 'BolC3t16146H' => 'bol', 'BolC3t16637H' => 'bol', 'BolC4t22257H' => 'bol', 'BolC4t24728H' => 'bol', 'BolC5t34517H' => 'bol', 'BolC7t45703H' => 'bol', 'BolC8t51166H' => 'bol', 'BolC9t53038H' => 'bol', 'BolC9t60000H' => 'bol', 'BraA01t01345Z' => 'bra', 'BraA01t01346Z' => 'bra', 'BraA01t01348Z' => 'bra', 'BraA03t12347Z' => 'bra', 'BraA03t12775Z' => 'bra', 'BraA03t14439Z' => 'bra', 'BraA04t15860Z' => 'bra', 'BraA05t19511Z' => 'bra', 'BraA05t22746Z' => 'bra', 'BraA09t35767Z' => 'bra', 'BraA09t40732Z' => 'bra', 'BraA10t45233Z' => 'bra', 'C03p38720' => 'bna', 'C03p43680' => 'bna', 'C04p06350' => 'bna', 'C04p31800' => 'bna', 'C05p58680' => 'bna', 'C07p52110' => 'bna', 'C08p35760' => 'bna', 'C09p01050' => 'bna', 'C09p72600' => 'bna', 'CAN.G106.2' => 'can', 'CAN.G1482.1' => 'can', 'CAN.G324.12' => 'can', 'CAN.G388.20' => 'can', 'CAN.G412.7' => 'can', 'CAN.G694.32' => 'can', 'CAN.G92.12' => 'can', 'CANSAT11G2353' => 'cansat', 'CANSAT21G1398' => 'cansat', 'CANSAT56G2456' => 'cansat', 'CANSAT56G3031' => 'cansat', 'CANSAT56G4539' => 'cansat', 'CARHR083680' => 'chi', 'CARHR171190' => 'chi', 'CARHR209010' => 'chi', 'CARHR229680' => 'chi', 'CARHR249490' => 'chi', 'Carub.0003s0844' => 'cru', 'Carub.0005s2755' => 'cru', 'Carub.0006s0322' => 'cru', 'Carub.0006s3586' => 'cru', 'Carub.0007s1855' => 'cru', 'Ca_07808_v3' => 'car', 'Ca_09535_v3' => 'car', 'Ca_10548_v3' => 'car', 'Ca_19913_v3' => 'car', 'Ca_19916_v3' => 'car', 'Ca_19975_v3' => 'car', 'CBR_g22876' => 'cbr', 'CBR_g22879' => 'cbr', 'CBR_g38491' => 'cbr', 'CBR_g54185' => 'cbr', 'CBR_g54190' => 'cbr', 'Cc02_g11020' => 'ccan', 'Cc02_g23920' => 'ccan', 'Cc02_g39860' => 'ccan', 'Cc02_g39870' => 'ccan', 'Cc03_g06760' => 'ccan', 'Cc06_g02450' => 'ccan', 'Cc09_g09450' => 'ccan', 'CDE02G1959' => 'cde', 'CDE04G0600' => 'cde', 'CDE07G1996' => 'cde', 'CDE07G2078' => 'cde', 'CDE11G0611' => 'cde', 'Cfa001683' => 'cfa', 'Cfa001734' => 'cfa', 'Cfa001737' => 'cfa', 'Cfa003751' => 'cfa', 'Cfa012019' => 'cfa', 'Cfa017353' => 'cfa', 'Cfa017732' => 'cfa', 'Cfa022464' => 'cfa', 'Ciclev10012400m.g' => 'ccl', 'Ciclev10021242m.g' => 'ccl', 'Ciclev10021302m.g' => 'ccl', 'Ciclev10021463m.g' => 'ccl', 'Ciclev10032359m.g' => 'ccl', 'CiPaw.01G081000' => 'cil', 'CiPaw.01G262500' => 'cil', 'CiPaw.01G269800' => 'cil', 'CiPaw.02G168400' => 'cil', 'CiPaw.05G119500' => 'cil', 'CiPaw.11G147300' => 'cil', 'ClCG01G003630' => 'cla', 'ClCG05G000510' => 'cla', 'ClCG05G002300' => 'cla', 'ClCG08G007650' => 'cla', 'ClCG10G021250' => 'cla', 'COL.COLO4_06218' => 'col', 'COL.COLO4_12538' => 'col', 'COL.COLO4_14775' => 'col', 'COL.COLO4_23875' => 'col', 'Cpa.g.sc141.16' => 'cpa', 'Cpa.g.sc169.16' => 'cpa', 'Cpa.g.sc244.4' => 'cpa', 'Cpa.g.sc244.5' => 'cpa', 'Cpa.g.sc29.87' => 'cpa', 'Cpa.g.sc53.115' => 'cpa', 'Cre03.g207502' => 'cre', 'Cre06.g277000' => 'cre', 'Cre09.g394050' => 'cre', 'CsaV3_3G007680' => 'csa', 'CsaV3_3G009710' => 'csa', 'CsaV3_3G034790' => 'csa', 'CsaV3_5G003750' => 'csa', 'CsaV3_6G036620' => 'csa', 'CSS0002288' => 'camsi', 'CSS0011250' => 'camsi', 'CSS0021619' => 'camsi', 'CSS0046701' => 'camsi', 'DCAR_006420' => 'dca', 'DCAR_006865' => 'dca', 'DCAR_008558' => 'dca', 'DCAR_028754' => 'dca', 'DCAR_028755' => 'dca', 'Dinv31218' => 'din', 'Dinv32371' => 'din', 'Dinv34250' => 'din', 'Dinv37156' => 'din', 'Dinv43704' => 'din', 'Duzib093G1811' => 'dzi', 'Duzib106G1622' => 'dzi', 'Duzib114G0504' => 'dzi', 'Duzib128G0338' => 'dzi', 'Duzib128G1577' => 'dzi', 'Duzib133G0104' => 'dzi', 'Duzib133G1080' => 'dzi', 'Duzib138G0324' => 'dzi', 'Duzib138G0394' => 'dzi', 'Duzib205G0122' => 'dzi', 'Duzib268G1020' => 'dzi', 'Duzib268G1359' => 'dzi', 'ECA232G3929' => 'eca', 'ECA236G2210' => 'eca', 'ECA236G2287' => 'eca', 'ECA240G4568' => 'eca', 'ECA247G0894' => 'eca', 'EL10Ac1g00200' => 'bvu', 'EL10Ac1g00886' => 'bvu', 'EL10As1g23091' => 'bvu', 'EL10As1g23092' => 'bvu', 'Eucgr.A01284' => 'egr', 'Eucgr.A01285' => 'egr', 'Eucgr.D02456' => 'egr', 'Eucgr.E00018' => 'egr', 'Eucgr.E01439' => 'egr', 'Eucgr.G02859' => 'egr', 'FAN01G0168' => 'fan', 'FAN01G0453' => 'fan', 'FAN01G2761' => 'fan', 'FAN02G1239' => 'fan', 'FAN03G0645' => 'fan', 'FAN03G2707' => 'fan', 'FAN03G2978' => 'fan', 'FAN04G0227' => 'fan', 'FAN06G0091' => 'fan', 'FAN06G1418' => 'fan', 'FAN06G1512' => 'fan', 'FAN06G1986' => 'fan', 'FAN06G2905' => 'fan', 'FAN06G4325' => 'fan', 'FAN08G0033' => 'fan', 'FAN09G0642' => 'fan', 'FAN10G1763' => 'fan', 'FAN10G2026' => 'fan', 'FAN10G2513' => 'fan', 'FAN10G3402' => 'fan', 'FAN10G3564' => 'fan', 'FAN10G3987' => 'fan', 'FAN13G1490' => 'fan', 'FAN14G5857' => 'fan', 'FAN18G1188' => 'fan', 'FvH4_5g00750' => 'fve', 'FvH4_6g13410' => 'fve', 'FvH4_7g11740' => 'fve', 'FvH4_7g17410' => 'fve', 'FvH4_7g18860' => 'fve', 'Glyma.01G099100' => 'gma', 'Glyma.01G142300' => 'gma', 'Glyma.03G025500' => 'gma', 'Glyma.03G069700' => 'gma', 'Glyma.03G260000' => 'gma', 'Glyma.09G269800' => 'gma', 'Glyma.10G208700' => 'gma', 'Glyma.18G220400' => 'gma', 'Glyma.20G182000' => 'gma', 'Gohir.A01G221726' => 'ghi', 'Gohir.A07G134600' => 'ghi', 'Gohir.A07G146000' => 'ghi', 'Gohir.A08G173900' => 'ghi', 'Gohir.A09G194900' => 'ghi', 'Gohir.A10G204100' => 'ghi', 'Gohir.A11G080600' => 'ghi', 'Gohir.A11G327500' => 'ghi', 'Gohir.A12G101800' => 'ghi', 'Gohir.D01G211200' => 'ghi', 'Gohir.D07G139200' => 'ghi', 'Gohir.D07G152100' => 'ghi', 'Gohir.D08G192600' => 'ghi', 'Gohir.D09G189200' => 'ghi', 'Gohir.D10G212000' => 'ghi', 'Gohir.D11G085200' => 'ghi', 'Gohir.D11G346400' => 'ghi', 'Gohir.D12G104800' => 'ghi', 'Gorai.001G151300' => 'gra', 'Gorai.001G174100' => 'gra', 'Gorai.002G257000' => 'gra', 'Gorai.004G202600' => 'gra', 'Gorai.007G090900' => 'gra', 'Gorai.007G376700' => 'gra', 'Gorai.008G114100' => 'gra', 'Gorai.011G237900' => 'gra', 'GSVIVG01005450001' => 'vvi', 'GSVIVG01016232001' => 'vvi', 'GSVIVG01026157001' => 'vvi', 'GSVIVG01027419001' => 'vvi', 'GSVIVG01027631001' => 'vvi', 'GSVIVG01034143001' => 'vvi', 'HanXRQChr03g0093921' => 'han', 'HanXRQChr04g0120001' => 'han', 'HanXRQChr04g0122561' => 'han', 'HanXRQChr09g0246851' => 'han', 'HanXRQChr10g0293311' => 'han', 'HanXRQChr13g0425231' => 'han', 'HanXRQChr16g0532571' => 'han', 'Haze_09050' => 'cav', 'Haze_15715' => 'cav', 'Haze_15716' => 'cav', 'Haze_16803' => 'cav', 'Haze_16850' => 'cav', 'Hma1.2p1_0301F.1_g118655' => 'hma', 'Hma1.2p1_0309F.1_g120590' => 'hma', 'Hma1.2p1_0936F.1_g238900' => 'hma', 'Hma1.2p1_3552F.1_g336740' => 'hma', 'HPP92_003520' => 'vpl', 'HPP92_006628' => 'vpl', 'HPP92_006645' => 'vpl', 'HPP92_014669' => 'vpl', 'HPP92_015077' => 'vpl', 'Hund16742' => 'sun', 'Hund17022' => 'sun', 'Lalb_Chr02g0152131' => 'lal', 'Lalb_Chr05g0225371' => 'lal', 'Lalb_Chr07g0189841' => 'lal', 'Lalb_Chr07g0192961' => 'lal', 'Lalb_Chr12g0208221' => 'lal', 'Lalb_Chr13g0291211' => 'lal', 'Lalb_Chr13g0291781' => 'lal', 'Lalb_Chr18g0044651' => 'lal', 'Lalb_Chr21g0313731' => 'lal', 'Lj1g0022533' => 'lja', 'Lj2A18T50' => 'lonja', 'Lj2A92G93' => 'lonja', 'Lj3A965T73' => 'lonja', 'Lj3g0000673' => 'lja', 'Lj3g0002666' => 'lja', 'Lj4g0016985' => 'lja', 'Lj5g0003625' => 'lja', 'Lj7A529G36' => 'lonja', 'Lj9A569T49' => 'lonja', 'Lj9A604T63' => 'lonja', 'Lsat_1_v5_gn_3_132060' => 'lsa', 'Lsat_1_v5_gn_4_68941' => 'lsa', 'Lsat_1_v5_gn_5_95580' => 'lsa', 'Lsat_1_v5_gn_7_161' => 'lsa', 'Lsat_1_v5_gn_7_7041' => 'lsa', 'Lsat_1_v5_gn_9_33481' => 'lsa', 'Lsat_1_v5_gn_9_68260' => 'lsa', 'Manes.01G073100' => 'mes', 'Manes.01G266300' => 'mes', 'Manes.02G033300' => 'mes', 'Manes.05G017900' => 'mes', 'Manes.05G046100' => 'mes', 'Manes.08G080900' => 'mes', 'Manes.10G049400' => 'mes', 'Mapoly0009s0186' => 'mpo', 'Mapoly0036s0118' => 'mpo', 'Mapoly0101s0046' => 'mpo', 'MBI04_g30218_MAGBIO' => 'mbi', 'MBI04_g35564_MAGBIO' => 'mbi', 'MBI12_g34011_MAGBIO' => 'mbi', 'MBI14_g04655_MAGBIO' => 'mbi', 'MCO07G653' => 'mco', 'MCO10G173' => 'mco', 'MD01G1087100' => 'mdo', 'MD01G1104200' => 'mdo', 'MD02G1205100' => 'mdo', 'MD04G1079200' => 'mdo', 'MD04G1131400' => 'mdo', 'MD07G1121600' => 'mdo', 'MD07G1157300' => 'mdo', 'MD07G1171000' => 'mdo', 'MD12G1144500' => 'mdo', 'Medtr1g094610' => 'mtr', 'Medtr4g021795' => 'mtr', 'Medtr4g023760' => 'mtr', 'Medtr7g118050' => 'mtr', 'MELO3C005582.2' => 'cme', 'MELO3C005989.2' => 'cme', 'MELO3C006192.2' => 'cme', 'MELO3C009248.2' => 'cme', 'MELO3C019817.2' => 'cme', 'Migut.B01625' => 'egut', 'Migut.B01915' => 'egut', 'Migut.F01721' => 'egut', 'Migut.J00314' => 'egut', 'MSTRG.20742' => 'ama', 'MSTRG.8134' => 'ama', 'Nitab4.5_0000096g0010' => 'nta', 'Nitab4.5_0000202g0030' => 'nta', 'Nitab4.5_0000216g0370' => 'nta', 'Nitab4.5_0000457g0230' => 'nta', 'Nitab4.5_0001702g0170' => 'nta', 'Nitab4.5_0003607g0010' => 'nta', 'Nitab4.5_0004917g0020' => 'nta', 'Nitab4.5_0007059g0010' => 'nta', 'Nitab4.5_0007184g0010' => 'nta', 'Nitab4.5_0007346g0020' => 'nta', 'Nn1g00410' => 'nnu', 'Nn1g01252' => 'nnu', 'Nn2g11168' => 'nnu', 'Nn2g13403' => 'nnu', 'Nn2g13760' => 'nnu', 'Nn4g26380' => 'nnu', 'Oeu000806.2' => 'oeu', 'Oeu005788.1' => 'oeu', 'Oeu006900.3' => 'oeu', 'Oeu007797.1' => 'oeu', 'Oeu011932.1' => 'oeu', 'Oeu022739.1' => 'oeu', 'Oeu037918.1' => 'oeu', 'Oeu055490.2' => 'oeu', 'Os01g0844400' => 'osa', 'Os02g0819100' => 'osa', 'Os03g0804300' => 'osa', 'Os05g0458000' => 'osa', 'Os07g0467800' => 'osa', 'Os12g0602200' => 'osa', 'Peaxi162Scf00013g03444' => 'pax', 'Peaxi162Scf00094g01120' => 'pax', 'Peaxi162Scf00191g01211' => 'pax', 'Peaxi162Scf00238g01110' => 'pax', 'Peaxi162Scf00330g00719' => 'pax', 'Peaxi162Scf00627g00018' => 'pax', 'PGR031G2686' => 'pgr', 'PGR042G0809' => 'pgr', 'PGR142G0193' => 'pgr', 'PGSC0003DMG400011066' => 'stu', 'PGSC0003DMG400012041' => 'stu', 'PGSC0003DMG400013678' => 'stu', 'PGSC0003DMG400023477' => 'stu', 'PGSC0003DMG400025956' => 'stu', 'PGSC0003DMG401019151' => 'stu', 'Phvul.006G116400' => 'pvu', 'Phvul.007G097300' => 'pvu', 'Phvul.010G015000' => 'pvu', 'Phvul.010G083900' => 'pvu', 'Potri.001G117100' => 'ptr', 'Potri.002G147300' => 'ptr', 'Potri.003G115600' => 'ptr', 'Potri.006G087400' => 'ptr', 'Potri.010G226100' => 'ptr', 'Potri.014G069200' => 'ptr', 'Potri.014G104000' => 'ptr', 'Potri.016G100200' => 'ptr', 'Pp3c10_20450' => 'ppa', 'Pp3c1_42400' => 'ppa', 'Pp3c3_24390' => 'ppa', 'Pp3c3_2860' => 'ppa', 'PRCOL_00003193' => 'pco', 'Prupe.2G144500' => 'ppe', 'Prupe.2G195700' => 'ppe', 'Prupe.2G209800' => 'ppe', 'Prupe.5G080000' => 'ppe', 'Prupe.6G257900' => 'ppe', 'Psat3g001160' => 'psa', 'Psat6g181880' => 'psa', 'Psat7g233720' => 'psa', 'PSO063G7587' => 'pso', 'PSO339G2145' => 'pso', 'PSO339G3369' => 'pso', 'PSO478G2747' => 'pso', 'PSO513G0140' => 'pso', 'PSO782G1614' => 'pso', 'PSO782G4889' => 'pso', 'PSO782G5485' => 'pso', 'PSO801G0241' => 'pso', 'QL07p048854' => 'qlo', 'QL08p046745' => 'qlo', 'QL08p052606' => 'qlo', 'QL08p053414' => 'qlo', 'QL08p054868' => 'qlo', 'RcHm_v2.0_Chr1g0350251' => 'rch', 'RcHm_v2.0_Chr1g0360851' => 'rch', 'RcHm_v2.0_Chr1g0362791' => 'rch', 'RcHm_v2.0_Chr3g0466281' => 'rch', 'RcHm_v2.0_Chr7g0201481' => 'rch', 'Rhsim01G0148600' => 'rsi', 'Rhsim05G0194400' => 'rsi', 'Rhsim07G0000700' => 'rsi', 'Rhsim07G0000800' => 'rsi', 'Rhsim07G0027900' => 'rsi', 'Rhsim09G0149500' => 'rsi', 'RhsimUnG0186900' => 'rsi', 'Sabra01G0089900' => 'sbr', 'Sabra02G0114700' => 'sbr', 'Sabra02G0116300' => 'sbr', 'Sabra03G0080100' => 'sbr', 'Sabra08G0024300' => 'sbr', 'Sabra10G0174300' => 'sbr', 'Sabra14G0048900' => 'sbr', 'Sabra14G0076500' => 'sbr', 'SalBow5G2513' => 'sbo', 'Sc01g0002300' => 'sci', 'Sc01g0004450' => 'sci', 'Sc06g0001680' => 'sci', 'Sc23g0003580' => 'sci', 'Sed0000913' => 'sed', 'Sed0001655' => 'sed', 'Sed0007745' => 'sed', 'Sed0010951' => 'sed', 'Sed0017599' => 'sed', 'Sed0021405' => 'sed', 'Sed0022810' => 'sed', 'SEGI_07099' => 'sgi', 'SEGI_11931' => 'sgi', 'SEGI_13187' => 'sgi', 'SEGI_29958' => 'sgi', 'SEGI_36351' => 'sgi', 'SGA_v2.0_scaffold126G33770' => 'sas', 'SGA_v2.0_scaffold153G37003' => 'sas', 'SGA_v2.0_scaffold2G01359' => 'sas', 'SGA_v2.0_scaffold5G03064' => 'sas', 'SGA_v2.0_scaffold95G28903' => 'sas', 'SHI12701' => 'shi', 'SHI26410' => 'shi', 'SHI38997' => 'shi', 'SHI53759' => 'shi', 'SHI53886' => 'shi', 'SHI54714' => 'shi', 'SMO011G0041' => 'smo', 'SMO146G0251' => 'smo', 'SMO160G0004' => 'smo', 'SMO174G0057' => 'smo', 'SMO244G0089' => 'smo', 'SMO296G0011' => 'smo', 'Solyc01g091280.3' => 'sly', 'Solyc05g047610.3' => 'sly', 'Solyc05g047640.3' => 'sly', 'Solyc05g055630.3' => 'sly', 'Solyc10g018160.2' => 'sly', 'Solyc10g084820.2' => 'sly', 'Solyc10g086565.2' => 'sly', 'Sopen01g037030' => 'spe', 'Sopen05g027920' => 'spe', 'Sopen05g034070' => 'spe', 'Sopen10g007260' => 'spe', 'Sopen10g034260' => 'spe', 'Sopen10g035950' => 'spe', 'Sp3g07710' => 'spa', 'Sp4g27420' => 'spa', 'Sp5g02450' => 'spa', 'Sp6g01280' => 'spa', 'Sp6g38480' => 'spa', 'Sp7g20780' => 'spa', 'TAR374G1413' => 'tar', 'TAR623G1777' => 'tar', 'TAR629G2370' => 'tar', 'TAR633G1759' => 'tar', 'TAR636G3387' => 'tar', 'THA.LOC104802447' => 'tha', 'THA.LOC104813916' => 'tha', 'THA.LOC104816423' => 'tha', 'THA.LOC104817246' => 'tha', 'THA.LOC104825895' => 'tha', 'Thecc.01G335200' => 'tca', 'Thecc.01G377400' => 'tca', 'Thecc.03G262200' => 'tca', 'Thecc.05G036800' => 'tca', 'Thecc.10G080500' => 'tca', 'Thecc.10G080800' => 'tca', 'Thhalv10001560m.g' => 'esa', 'Thhalv10006120m.g' => 'esa', 'Thhalv10014375m.g' => 'esa', 'Thhalv10021264m.g' => 'esa', 'Thhalv10028856m.g' => 'esa', 'TPR.G1914' => 'tpr', 'TPR.G4757' => 'tpr', 'TPR.G5595' => 'tpr', 'TWI14G0952' => 'twi', 'TWI14G1307' => 'twi', 'TWI38G2143' => 'twi', 'TWI59G0826' => 'twi', 'TWI77G0527' => 'twi', 'TWI81G0150' => 'twi', 'unitig_21.g21018' => 'ugi', 'unitig_26.g9725' => 'ugi', 'unitig_744.g24653' => 'ugi', 'unitig_749.g13778' => 'ugi', 'unitig_899.g15035' => 'ugi', 'vmacro04296' => 'vma', 'vmacro04852' => 'vma', 'vmacro13404' => 'vma', 'vmacro20169' => 'vma', 'vmacro21014' => 'vma', 'VMungo0331G0237' => 'vmu', 'VMungo0331G0706' => 'vmu', 'VMungo0331G1361' => 'vmu', 'VMungo0331G1489' => 'vmu', 'VMungo0540G1037' => 'vmu', 'VMungo0720G2487' => 'vmu', 'VMungo0720G2721' => 'vmu', 'Zm00001eb086860' => 'zma', 'Zm00001eb104760' => 'zma', 'Zm00001eb148220' => 'zma', 'Zm00001eb259030' => 'zma', 'Zm00001eb289590' => 'zma', 'Zm00001eb420150' => 'zma' ), 'gf_id' => 'HOM05D000968', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000968' ), 'data_identifier' => 'HOM05D000968', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000968', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p31690' => 'bna', 'A03p36040' => 'bna', 'A03p53730' => 'bna', 'A04p01410' => 'bna', 'A05p05420' => 'bna', 'A05p39630' => 'bna', 'A05p39640' => 'bna', 'A09p00970' => 'bna', 'A09p53060' => 'bna', 'A10p31890' => 'bna', 'Aa31LG10G15040' => 'aar', 'Aa31LG1G21090' => 'aar', 'Aa31LG1G26900' => 'aar', 'Aa31LG3G1820' => 'aar', 'Aa31LG5G1100' => 'aar', 'Aa31LG6G4740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2265' => 'aag', 'Actinidia07998' => 'ach', 'Actinidia11266' => 'ach', 'Actinidia12682' => 'ach', 'Actinidia26479' => 'ach', 'Actinidia31406' => 'ach', 'Actinidia32437' => 'ach', 'Actinidia38862' => 'ach', 'Ah.05g174230' => 'amhyb', 'Ah.05g179070' => 'amhyb', 'Ah.05g179090' => 'amhyb', 'Ah.12g059950' => 'amhyb', 'AL3G20480' => 'aly', 'AL4G44520' => 'aly', 'AL5G43110' => 'aly', 'AL6G13890' => 'aly', 'AL6G52620' => 'aly', 'AL7G30830' => 'aly', 'Aqoxy1G00899' => 'aox', 'Aqoxy5G04333' => 'aox', 'Aqoxy7G00641' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3IZ0NN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4EF6AW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W9P8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79GA3M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C43NQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFCU6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G95YVJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCHK29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LU1UG8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX91RN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGB4B1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8DA0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9H7JI' => 'arhy', 'AT3G09320' => 'ath', 'AT3G60800' => 'ath', 'AT4G00840' => 'ath', 'AT4G22750' => 'ath', 'AT5G04270' => 'ath', 'ATR0090G003' => 'atr', 'ATR0559G349' => 'atr', 'ATR0680G261' => 'atr', 'ATR0810G048' => 'atr', 'Atru.chr12.831' => 'acertr', 'Atru.chr5.303' => 'acertr', 'Atru.chr5.748' => 'acertr', 'Atru.chr8.1999' => 'acertr', 'Atru.chr9.1436' => 'acertr', 'AUR62004211' => 'cqu', 'AUR62004548' => 'cqu', 'AUR62013637' => 'cqu', 'AUR62022662' => 'cqu', 'AUR62025777' => 'cqu', 'AUR62042386' => 'cqu', 'BcaB01g02310' => 'bca', 'BcaB01g06062' => 'bca', 'BcaB02g08975' => 'bca', 'BcaB02g08980' => 'bca', 'BcaC01g04228' => 'bca', 'BcaC01g06830' => 'bca', 'BcaC02g10186' => 'bca', 'BcaC02g12214' => 'bca', 'BcaC04g24101' => 'bca', 'BcaC05g29520' => 'bca', 'BcaC05g29661' => 'bca', 'BcaC06g32130' => 'bca', 'BcaC06g32131' => 'bca', 'BcaC07g40601' => 'bca', 'BcaC07g42641' => 'bca', 'BcaNung01038' => 'bca', 'BcaNung01676' => 'bca', 'BcaNung02480' => 'bca', 'BcaNung07376' => 'bca', 'BolC3t16146H' => 'bol', 'BolC3t16637H' => 'bol', 'BolC4t22257H' => 'bol', 'BolC4t24728H' => 'bol', 'BolC5t34517H' => 'bol', 'BolC7t45703H' => 'bol', 'BolC8t51166H' => 'bol', 'BolC9t53038H' => 'bol', 'BolC9t60000H' => 'bol', 'BraA01t01345Z' => 'bra', 'BraA01t01346Z' => 'bra', 'BraA01t01348Z' => 'bra', 'BraA03t12347Z' => 'bra', 'BraA03t12775Z' => 'bra', 'BraA03t14439Z' => 'bra', 'BraA04t15860Z' => 'bra', 'BraA05t19511Z' => 'bra', 'BraA05t22746Z' => 'bra', 'BraA09t35767Z' => 'bra', 'BraA09t40732Z' => 'bra', 'BraA10t45233Z' => 'bra', 'C03p38720' => 'bna', 'C03p43680' => 'bna', 'C04p06350' => 'bna', 'C04p31800' => 'bna', 'C05p58680' => 'bna', 'C07p52110' => 'bna', 'C08p35760' => 'bna', 'C09p01050' => 'bna', 'C09p72600' => 'bna', 'CAN.G106.2' => 'can', 'CAN.G1482.1' => 'can', 'CAN.G324.12' => 'can', 'CAN.G388.20' => 'can', 'CAN.G412.7' => 'can', 'CAN.G694.32' => 'can', 'CAN.G92.12' => 'can', 'CANSAT11G2353' => 'cansat', 'CANSAT21G1398' => 'cansat', 'CANSAT56G2456' => 'cansat', 'CANSAT56G3031' => 'cansat', 'CANSAT56G4539' => 'cansat', 'CARHR083680' => 'chi', 'CARHR171190' => 'chi', 'CARHR209010' => 'chi', 'CARHR229680' => 'chi', 'CARHR249490' => 'chi', 'Carub.0003s0844' => 'cru', 'Carub.0005s2755' => 'cru', 'Carub.0006s0322' => 'cru', 'Carub.0006s3586' => 'cru', 'Carub.0007s1855' => 'cru', 'Ca_07808_v3' => 'car', 'Ca_09535_v3' => 'car', 'Ca_10548_v3' => 'car', 'Ca_19913_v3' => 'car', 'Ca_19916_v3' => 'car', 'Ca_19975_v3' => 'car', 'CBR_g22876' => 'cbr', 'CBR_g22879' => 'cbr', 'CBR_g38491' => 'cbr', 'CBR_g54185' => 'cbr', 'CBR_g54190' => 'cbr', 'Cc02_g11020' => 'ccan', 'Cc02_g23920' => 'ccan', 'Cc02_g39860' => 'ccan', 'Cc02_g39870' => 'ccan', 'Cc03_g06760' => 'ccan', 'Cc06_g02450' => 'ccan', 'Cc09_g09450' => 'ccan', 'CDE02G1959' => 'cde', 'CDE04G0600' => 'cde', 'CDE07G1996' => 'cde', 'CDE07G2078' => 'cde', 'CDE11G0611' => 'cde', 'Cfa001683' => 'cfa', 'Cfa001734' => 'cfa', 'Cfa001737' => 'cfa', 'Cfa003751' => 'cfa', 'Cfa012019' => 'cfa', 'Cfa017353' => 'cfa', 'Cfa017732' => 'cfa', 'Cfa022464' => 'cfa', 'Ciclev10012400m.g' => 'ccl', 'Ciclev10021242m.g' => 'ccl', 'Ciclev10021302m.g' => 'ccl', 'Ciclev10021463m.g' => 'ccl', 'Ciclev10032359m.g' => 'ccl', 'CiPaw.01G081000' => 'cil', 'CiPaw.01G262500' => 'cil', 'CiPaw.01G269800' => 'cil', 'CiPaw.02G168400' => 'cil', 'CiPaw.05G119500' => 'cil', 'CiPaw.11G147300' => 'cil', 'ClCG01G003630' => 'cla', 'ClCG05G000510' => 'cla', 'ClCG05G002300' => 'cla', 'ClCG08G007650' => 'cla', 'ClCG10G021250' => 'cla', 'COL.COLO4_06218' => 'col', 'COL.COLO4_12538' => 'col', 'COL.COLO4_14775' => 'col', 'COL.COLO4_23875' => 'col', 'Cpa.g.sc141.16' => 'cpa', 'Cpa.g.sc169.16' => 'cpa', 'Cpa.g.sc244.4' => 'cpa', 'Cpa.g.sc244.5' => 'cpa', 'Cpa.g.sc29.87' => 'cpa', 'Cpa.g.sc53.115' => 'cpa', 'Cre03.g207502' => 'cre', 'Cre06.g277000' => 'cre', 'Cre09.g394050' => 'cre', 'CsaV3_3G007680' => 'csa', 'CsaV3_3G009710' => 'csa', 'CsaV3_3G034790' => 'csa', 'CsaV3_5G003750' => 'csa', 'CsaV3_6G036620' => 'csa', 'CSS0002288' => 'camsi', 'CSS0011250' => 'camsi', 'CSS0021619' => 'camsi', 'CSS0046701' => 'camsi', 'DCAR_006420' => 'dca', 'DCAR_006865' => 'dca', 'DCAR_008558' => 'dca', 'DCAR_028754' => 'dca', 'DCAR_028755' => 'dca', 'Dinv31218' => 'din', 'Dinv32371' => 'din', 'Dinv34250' => 'din', 'Dinv37156' => 'din', 'Dinv43704' => 'din', 'Duzib093G1811' => 'dzi', 'Duzib106G1622' => 'dzi', 'Duzib114G0504' => 'dzi', 'Duzib128G0338' => 'dzi', 'Duzib128G1577' => 'dzi', 'Duzib133G0104' => 'dzi', 'Duzib133G1080' => 'dzi', 'Duzib138G0324' => 'dzi', 'Duzib138G0394' => 'dzi', 'Duzib205G0122' => 'dzi', 'Duzib268G1020' => 'dzi', 'Duzib268G1359' => 'dzi', 'ECA232G3929' => 'eca', 'ECA236G2210' => 'eca', 'ECA236G2287' => 'eca', 'ECA240G4568' => 'eca', 'ECA247G0894' => 'eca', 'EL10Ac1g00200' => 'bvu', 'EL10Ac1g00886' => 'bvu', 'EL10As1g23091' => 'bvu', 'EL10As1g23092' => 'bvu', 'Eucgr.A01284' => 'egr', 'Eucgr.A01285' => 'egr', 'Eucgr.D02456' => 'egr', 'Eucgr.E00018' => 'egr', 'Eucgr.E01439' => 'egr', 'Eucgr.G02859' => 'egr', 'FAN01G0168' => 'fan', 'FAN01G0453' => 'fan', 'FAN01G2761' => 'fan', 'FAN02G1239' => 'fan', 'FAN03G0645' => 'fan', 'FAN03G2707' => 'fan', 'FAN03G2978' => 'fan', 'FAN04G0227' => 'fan', 'FAN06G0091' => 'fan', 'FAN06G1418' => 'fan', 'FAN06G1512' => 'fan', 'FAN06G1986' => 'fan', 'FAN06G2905' => 'fan', 'FAN06G4325' => 'fan', 'FAN08G0033' => 'fan', 'FAN09G0642' => 'fan', 'FAN10G1763' => 'fan', 'FAN10G2026' => 'fan', 'FAN10G2513' => 'fan', 'FAN10G3402' => 'fan', 'FAN10G3564' => 'fan', 'FAN10G3987' => 'fan', 'FAN13G1490' => 'fan', 'FAN14G5857' => 'fan', 'FAN18G1188' => 'fan', 'FvH4_5g00750' => 'fve', 'FvH4_6g13410' => 'fve', 'FvH4_7g11740' => 'fve', 'FvH4_7g17410' => 'fve', 'FvH4_7g18860' => 'fve', 'Glyma.01G099100' => 'gma', 'Glyma.01G142300' => 'gma', 'Glyma.03G025500' => 'gma', 'Glyma.03G069700' => 'gma', 'Glyma.03G260000' => 'gma', 'Glyma.09G269800' => 'gma', 'Glyma.10G208700' => 'gma', 'Glyma.18G220400' => 'gma', 'Glyma.20G182000' => 'gma', 'Gohir.A01G221726' => 'ghi', 'Gohir.A07G134600' => 'ghi', 'Gohir.A07G146000' => 'ghi', 'Gohir.A08G173900' => 'ghi', 'Gohir.A09G194900' => 'ghi', 'Gohir.A10G204100' => 'ghi', 'Gohir.A11G080600' => 'ghi', 'Gohir.A11G327500' => 'ghi', 'Gohir.A12G101800' => 'ghi', 'Gohir.D01G211200' => 'ghi', 'Gohir.D07G139200' => 'ghi', 'Gohir.D07G152100' => 'ghi', 'Gohir.D08G192600' => 'ghi', 'Gohir.D09G189200' => 'ghi', 'Gohir.D10G212000' => 'ghi', 'Gohir.D11G085200' => 'ghi', 'Gohir.D11G346400' => 'ghi', 'Gohir.D12G104800' => 'ghi', 'Gorai.001G151300' => 'gra', 'Gorai.001G174100' => 'gra', 'Gorai.002G257000' => 'gra', 'Gorai.004G202600' => 'gra', 'Gorai.007G090900' => 'gra', 'Gorai.007G376700' => 'gra', 'Gorai.008G114100' => 'gra', 'Gorai.011G237900' => 'gra', 'GSVIVG01005450001' => 'vvi', 'GSVIVG01016232001' => 'vvi', 'GSVIVG01026157001' => 'vvi', 'GSVIVG01027419001' => 'vvi', 'GSVIVG01027631001' => 'vvi', 'GSVIVG01034143001' => 'vvi', 'HanXRQChr03g0093921' => 'han', 'HanXRQChr04g0120001' => 'han', 'HanXRQChr04g0122561' => 'han', 'HanXRQChr09g0246851' => 'han', 'HanXRQChr10g0293311' => 'han', 'HanXRQChr13g0425231' => 'han', 'HanXRQChr16g0532571' => 'han', 'Haze_09050' => 'cav', 'Haze_15715' => 'cav', 'Haze_15716' => 'cav', 'Haze_16803' => 'cav', 'Haze_16850' => 'cav', 'Hma1.2p1_0301F.1_g118655' => 'hma', 'Hma1.2p1_0309F.1_g120590' => 'hma', 'Hma1.2p1_0936F.1_g238900' => 'hma', 'Hma1.2p1_3552F.1_g336740' => 'hma', 'HPP92_003520' => 'vpl', 'HPP92_006628' => 'vpl', 'HPP92_006645' => 'vpl', 'HPP92_014669' => 'vpl', 'HPP92_015077' => 'vpl', 'Hund16742' => 'sun', 'Hund17022' => 'sun', 'Lalb_Chr02g0152131' => 'lal', 'Lalb_Chr05g0225371' => 'lal', 'Lalb_Chr07g0189841' => 'lal', 'Lalb_Chr07g0192961' => 'lal', 'Lalb_Chr12g0208221' => 'lal', 'Lalb_Chr13g0291211' => 'lal', 'Lalb_Chr13g0291781' => 'lal', 'Lalb_Chr18g0044651' => 'lal', 'Lalb_Chr21g0313731' => 'lal', 'Lj1g0022533' => 'lja', 'Lj2A18T50' => 'lonja', 'Lj2A92G93' => 'lonja', 'Lj3A965T73' => 'lonja', 'Lj3g0000673' => 'lja', 'Lj3g0002666' => 'lja', 'Lj4g0016985' => 'lja', 'Lj5g0003625' => 'lja', 'Lj7A529G36' => 'lonja', 'Lj9A569T49' => 'lonja', 'Lj9A604T63' => 'lonja', 'Lsat_1_v5_gn_3_132060' => 'lsa', 'Lsat_1_v5_gn_4_68941' => 'lsa', 'Lsat_1_v5_gn_5_95580' => 'lsa', 'Lsat_1_v5_gn_7_161' => 'lsa', 'Lsat_1_v5_gn_7_7041' => 'lsa', 'Lsat_1_v5_gn_9_33481' => 'lsa', 'Lsat_1_v5_gn_9_68260' => 'lsa', 'Manes.01G073100' => 'mes', 'Manes.01G266300' => 'mes', 'Manes.02G033300' => 'mes', 'Manes.05G017900' => 'mes', 'Manes.05G046100' => 'mes', 'Manes.08G080900' => 'mes', 'Manes.10G049400' => 'mes', 'Mapoly0009s0186' => 'mpo', 'Mapoly0036s0118' => 'mpo', 'Mapoly0101s0046' => 'mpo', 'MBI04_g30218_MAGBIO' => 'mbi', 'MBI04_g35564_MAGBIO' => 'mbi', 'MBI12_g34011_MAGBIO' => 'mbi', 'MBI14_g04655_MAGBIO' => 'mbi', 'MCO07G653' => 'mco', 'MCO10G173' => 'mco', 'MD01G1087100' => 'mdo', 'MD01G1104200' => 'mdo', 'MD02G1205100' => 'mdo', 'MD04G1079200' => 'mdo', 'MD04G1131400' => 'mdo', 'MD07G1121600' => 'mdo', 'MD07G1157300' => 'mdo', 'MD07G1171000' => 'mdo', 'MD12G1144500' => 'mdo', 'Medtr1g094610' => 'mtr', 'Medtr4g021795' => 'mtr', 'Medtr4g023760' => 'mtr', 'Medtr7g118050' => 'mtr', 'MELO3C005582.2' => 'cme', 'MELO3C005989.2' => 'cme', 'MELO3C006192.2' => 'cme', 'MELO3C009248.2' => 'cme', 'MELO3C019817.2' => 'cme', 'Migut.B01625' => 'egut', 'Migut.B01915' => 'egut', 'Migut.F01721' => 'egut', 'Migut.J00314' => 'egut', 'MSTRG.20742' => 'ama', 'MSTRG.8134' => 'ama', 'Nitab4.5_0000096g0010' => 'nta', 'Nitab4.5_0000202g0030' => 'nta', 'Nitab4.5_0000216g0370' => 'nta', 'Nitab4.5_0000457g0230' => 'nta', 'Nitab4.5_0001702g0170' => 'nta', 'Nitab4.5_0003607g0010' => 'nta', 'Nitab4.5_0004917g0020' => 'nta', 'Nitab4.5_0007059g0010' => 'nta', 'Nitab4.5_0007184g0010' => 'nta', 'Nitab4.5_0007346g0020' => 'nta', 'Nn1g00410' => 'nnu', 'Nn1g01252' => 'nnu', 'Nn2g11168' => 'nnu', 'Nn2g13403' => 'nnu', 'Nn2g13760' => 'nnu', 'Nn4g26380' => 'nnu', 'Oeu000806.2' => 'oeu', 'Oeu005788.1' => 'oeu', 'Oeu006900.3' => 'oeu', 'Oeu007797.1' => 'oeu', 'Oeu011932.1' => 'oeu', 'Oeu022739.1' => 'oeu', 'Oeu037918.1' => 'oeu', 'Oeu055490.2' => 'oeu', 'Os01g0844400' => 'osa', 'Os02g0819100' => 'osa', 'Os03g0804300' => 'osa', 'Os05g0458000' => 'osa', 'Os07g0467800' => 'osa', 'Os12g0602200' => 'osa', 'Peaxi162Scf00013g03444' => 'pax', 'Peaxi162Scf00094g01120' => 'pax', 'Peaxi162Scf00191g01211' => 'pax', 'Peaxi162Scf00238g01110' => 'pax', 'Peaxi162Scf00330g00719' => 'pax', 'Peaxi162Scf00627g00018' => 'pax', 'PGR031G2686' => 'pgr', 'PGR042G0809' => 'pgr', 'PGR142G0193' => 'pgr', 'PGSC0003DMG400011066' => 'stu', 'PGSC0003DMG400012041' => 'stu', 'PGSC0003DMG400013678' => 'stu', 'PGSC0003DMG400023477' => 'stu', 'PGSC0003DMG400025956' => 'stu', 'PGSC0003DMG401019151' => 'stu', 'Phvul.006G116400' => 'pvu', 'Phvul.007G097300' => 'pvu', 'Phvul.010G015000' => 'pvu', 'Phvul.010G083900' => 'pvu', 'Potri.001G117100' => 'ptr', 'Potri.002G147300' => 'ptr', 'Potri.003G115600' => 'ptr', 'Potri.006G087400' => 'ptr', 'Potri.010G226100' => 'ptr', 'Potri.014G069200' => 'ptr', 'Potri.014G104000' => 'ptr', 'Potri.016G100200' => 'ptr', 'Pp3c10_20450' => 'ppa', 'Pp3c1_42400' => 'ppa', 'Pp3c3_24390' => 'ppa', 'Pp3c3_2860' => 'ppa', 'PRCOL_00003193' => 'pco', 'Prupe.2G144500' => 'ppe', 'Prupe.2G195700' => 'ppe', 'Prupe.2G209800' => 'ppe', 'Prupe.5G080000' => 'ppe', 'Prupe.6G257900' => 'ppe', 'Psat3g001160' => 'psa', 'Psat6g181880' => 'psa', 'Psat7g233720' => 'psa', 'PSO063G7587' => 'pso', 'PSO339G2145' => 'pso', 'PSO339G3369' => 'pso', 'PSO478G2747' => 'pso', 'PSO513G0140' => 'pso', 'PSO782G1614' => 'pso', 'PSO782G4889' => 'pso', 'PSO782G5485' => 'pso', 'PSO801G0241' => 'pso', 'QL07p048854' => 'qlo', 'QL08p046745' => 'qlo', 'QL08p052606' => 'qlo', 'QL08p053414' => 'qlo', 'QL08p054868' => 'qlo', 'RcHm_v2.0_Chr1g0350251' => 'rch', 'RcHm_v2.0_Chr1g0360851' => 'rch', 'RcHm_v2.0_Chr1g0362791' => 'rch', 'RcHm_v2.0_Chr3g0466281' => 'rch', 'RcHm_v2.0_Chr7g0201481' => 'rch', 'Rhsim01G0148600' => 'rsi', 'Rhsim05G0194400' => 'rsi', 'Rhsim07G0000700' => 'rsi', 'Rhsim07G0000800' => 'rsi', 'Rhsim07G0027900' => 'rsi', 'Rhsim09G0149500' => 'rsi', 'RhsimUnG0186900' => 'rsi', 'Sabra01G0089900' => 'sbr', 'Sabra02G0114700' => 'sbr', 'Sabra02G0116300' => 'sbr', 'Sabra03G0080100' => 'sbr', 'Sabra08G0024300' => 'sbr', 'Sabra10G0174300' => 'sbr', 'Sabra14G0048900' => 'sbr', 'Sabra14G0076500' => 'sbr', 'SalBow5G2513' => 'sbo', 'Sc01g0002300' => 'sci', 'Sc01g0004450' => 'sci', 'Sc06g0001680' => 'sci', 'Sc23g0003580' => 'sci', 'Sed0000913' => 'sed', 'Sed0001655' => 'sed', 'Sed0007745' => 'sed', 'Sed0010951' => 'sed', 'Sed0017599' => 'sed', 'Sed0021405' => 'sed', 'Sed0022810' => 'sed', 'SEGI_07099' => 'sgi', 'SEGI_11931' => 'sgi', 'SEGI_13187' => 'sgi', 'SEGI_29958' => 'sgi', 'SEGI_36351' => 'sgi', 'SGA_v2.0_scaffold126G33770' => 'sas', 'SGA_v2.0_scaffold153G37003' => 'sas', 'SGA_v2.0_scaffold2G01359' => 'sas', 'SGA_v2.0_scaffold5G03064' => 'sas', 'SGA_v2.0_scaffold95G28903' => 'sas', 'SHI12701' => 'shi', 'SHI26410' => 'shi', 'SHI38997' => 'shi', 'SHI53759' => 'shi', 'SHI53886' => 'shi', 'SHI54714' => 'shi', 'SMO011G0041' => 'smo', 'SMO146G0251' => 'smo', 'SMO160G0004' => 'smo', 'SMO174G0057' => 'smo', 'SMO244G0089' => 'smo', 'SMO296G0011' => 'smo', 'Solyc01g091280.3' => 'sly', 'Solyc05g047610.3' => 'sly', 'Solyc05g047640.3' => 'sly', 'Solyc05g055630.3' => 'sly', 'Solyc10g018160.2' => 'sly', 'Solyc10g084820.2' => 'sly', 'Solyc10g086565.2' => 'sly', 'Sopen01g037030' => 'spe', 'Sopen05g027920' => 'spe', 'Sopen05g034070' => 'spe', 'Sopen10g007260' => 'spe', 'Sopen10g034260' => 'spe', 'Sopen10g035950' => 'spe', 'Sp3g07710' => 'spa', 'Sp4g27420' => 'spa', 'Sp5g02450' => 'spa', 'Sp6g01280' => 'spa', 'Sp6g38480' => 'spa', 'Sp7g20780' => 'spa', 'TAR374G1413' => 'tar', 'TAR623G1777' => 'tar', 'TAR629G2370' => 'tar', 'TAR633G1759' => 'tar', 'TAR636G3387' => 'tar', 'THA.LOC104802447' => 'tha', 'THA.LOC104813916' => 'tha', 'THA.LOC104816423' => 'tha', 'THA.LOC104817246' => 'tha', 'THA.LOC104825895' => 'tha', 'Thecc.01G335200' => 'tca', 'Thecc.01G377400' => 'tca', 'Thecc.03G262200' => 'tca', 'Thecc.05G036800' => 'tca', 'Thecc.10G080500' => 'tca', 'Thecc.10G080800' => 'tca', 'Thhalv10001560m.g' => 'esa', 'Thhalv10006120m.g' => 'esa', 'Thhalv10014375m.g' => 'esa', 'Thhalv10021264m.g' => 'esa', 'Thhalv10028856m.g' => 'esa', 'TPR.G1914' => 'tpr', 'TPR.G4757' => 'tpr', 'TPR.G5595' => 'tpr', 'TWI14G0952' => 'twi', 'TWI14G1307' => 'twi', 'TWI38G2143' => 'twi', 'TWI59G0826' => 'twi', 'TWI77G0527' => 'twi', 'TWI81G0150' => 'twi', 'unitig_21.g21018' => 'ugi', 'unitig_26.g9725' => 'ugi', 'unitig_744.g24653' => 'ugi', 'unitig_749.g13778' => 'ugi', 'unitig_899.g15035' => 'ugi', 'vmacro04296' => 'vma', 'vmacro04852' => 'vma', 'vmacro13404' => 'vma', 'vmacro20169' => 'vma', 'vmacro21014' => 'vma', 'VMungo0331G0237' => 'vmu', 'VMungo0331G0706' => 'vmu', 'VMungo0331G1361' => 'vmu', 'VMungo0331G1489' => 'vmu', 'VMungo0540G1037' => 'vmu', 'VMungo0720G2487' => 'vmu', 'VMungo0720G2721' => 'vmu', 'Zm00001eb086860' => 'zma', 'Zm00001eb104760' => 'zma', 'Zm00001eb148220' => 'zma', 'Zm00001eb259030' => 'zma', 'Zm00001eb289590' => 'zma', 'Zm00001eb420150' => 'zma' ) $gf_id = 'HOM05D000968' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000968' ) $data_identifier = 'HOM05D000968' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 19, 'bol' => (int) 9, 'bra' => (int) 12, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 5, 'ccan' => (int) 7, 'cde' => (int) 5, 'cfa' => (int) 8, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 4, 'dca' => (int) 5, 'din' => (int) 5, 'dzi' => (int) 12, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 25, 'fve' => (int) 5, 'gma' => (int) 9, 'ghi' => (int) 18, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 7, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 5, 'sun' => (int) 2, 'lal' => (int) 9, 'lja' => (int) 5, 'lonja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 9, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 2, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 3, 'stu' => (int) 6, 'pvu' => (int) 4, 'ptr' => (int) 8, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 3, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 1, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 5, 'sas' => (int) 5, 'shi' => (int) 6, 'smo' => (int) 6, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 3, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420150' $species_info = array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ) $local_species = 'tca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000968', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p31690' => 'bna', 'A03p36040' => 'bna', 'A03p53730' => 'bna', 'A04p01410' => 'bna', 'A05p05420' => 'bna', 'A05p39630' => 'bna', 'A05p39640' => 'bna', 'A09p00970' => 'bna', 'A09p53060' => 'bna', 'A10p31890' => 'bna', 'Aa31LG10G15040' => 'aar', 'Aa31LG1G21090' => 'aar', 'Aa31LG1G26900' => 'aar', 'Aa31LG3G1820' => 'aar', 'Aa31LG5G1100' => 'aar', 'Aa31LG6G4740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2265' => 'aag', 'Actinidia07998' => 'ach', 'Actinidia11266' => 'ach', 'Actinidia12682' => 'ach', 'Actinidia26479' => 'ach', 'Actinidia31406' => 'ach', 'Actinidia32437' => 'ach', 'Actinidia38862' => 'ach', 'Ah.05g174230' => 'amhyb', 'Ah.05g179070' => 'amhyb', 'Ah.05g179090' => 'amhyb', 'Ah.12g059950' => 'amhyb', 'AL3G20480' => 'aly', 'AL4G44520' => 'aly', 'AL5G43110' => 'aly', 'AL6G13890' => 'aly', 'AL6G52620' => 'aly', 'AL7G30830' => 'aly', 'Aqoxy1G00899' => 'aox', 'Aqoxy5G04333' => 'aox', 'Aqoxy7G00641' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3IZ0NN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4EF6AW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W9P8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79GA3M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C43NQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFCU6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G95YVJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCHK29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LU1UG8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX91RN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGB4B1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8DA0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9H7JI' => 'arhy', 'AT3G09320' => 'ath', 'AT3G60800' => 'ath', 'AT4G00840' => 'ath', 'AT4G22750' => 'ath', 'AT5G04270' => 'ath', 'ATR0090G003' => 'atr', 'ATR0559G349' => 'atr', 'ATR0680G261' => 'atr', 'ATR0810G048' => 'atr', 'Atru.chr12.831' => 'acertr', 'Atru.chr5.303' => 'acertr', 'Atru.chr5.748' => 'acertr', 'Atru.chr8.1999' => 'acertr', 'Atru.chr9.1436' => 'acertr', 'AUR62004211' => 'cqu', 'AUR62004548' => 'cqu', 'AUR62013637' => 'cqu', 'AUR62022662' => 'cqu', 'AUR62025777' => 'cqu', 'AUR62042386' => 'cqu', 'BcaB01g02310' => 'bca', 'BcaB01g06062' => 'bca', 'BcaB02g08975' => 'bca', 'BcaB02g08980' => 'bca', 'BcaC01g04228' => 'bca', 'BcaC01g06830' => 'bca', 'BcaC02g10186' => 'bca', 'BcaC02g12214' => 'bca', 'BcaC04g24101' => 'bca', 'BcaC05g29520' => 'bca', 'BcaC05g29661' => 'bca', 'BcaC06g32130' => 'bca', 'BcaC06g32131' => 'bca', 'BcaC07g40601' => 'bca', 'BcaC07g42641' => 'bca', 'BcaNung01038' => 'bca', 'BcaNung01676' => 'bca', 'BcaNung02480' => 'bca', 'BcaNung07376' => 'bca', 'BolC3t16146H' => 'bol', 'BolC3t16637H' => 'bol', 'BolC4t22257H' => 'bol', 'BolC4t24728H' => 'bol', 'BolC5t34517H' => 'bol', 'BolC7t45703H' => 'bol', 'BolC8t51166H' => 'bol', 'BolC9t53038H' => 'bol', 'BolC9t60000H' => 'bol', 'BraA01t01345Z' => 'bra', 'BraA01t01346Z' => 'bra', 'BraA01t01348Z' => 'bra', 'BraA03t12347Z' => 'bra', 'BraA03t12775Z' => 'bra', 'BraA03t14439Z' => 'bra', 'BraA04t15860Z' => 'bra', 'BraA05t19511Z' => 'bra', 'BraA05t22746Z' => 'bra', 'BraA09t35767Z' => 'bra', 'BraA09t40732Z' => 'bra', 'BraA10t45233Z' => 'bra', 'C03p38720' => 'bna', 'C03p43680' => 'bna', 'C04p06350' => 'bna', 'C04p31800' => 'bna', 'C05p58680' => 'bna', 'C07p52110' => 'bna', 'C08p35760' => 'bna', 'C09p01050' => 'bna', 'C09p72600' => 'bna', 'CAN.G106.2' => 'can', 'CAN.G1482.1' => 'can', 'CAN.G324.12' => 'can', 'CAN.G388.20' => 'can', 'CAN.G412.7' => 'can', 'CAN.G694.32' => 'can', 'CAN.G92.12' => 'can', 'CANSAT11G2353' => 'cansat', 'CANSAT21G1398' => 'cansat', 'CANSAT56G2456' => 'cansat', 'CANSAT56G3031' => 'cansat', 'CANSAT56G4539' => 'cansat', 'CARHR083680' => 'chi', 'CARHR171190' => 'chi', 'CARHR209010' => 'chi', 'CARHR229680' => 'chi', 'CARHR249490' => 'chi', 'Carub.0003s0844' => 'cru', 'Carub.0005s2755' => 'cru', 'Carub.0006s0322' => 'cru', 'Carub.0006s3586' => 'cru', 'Carub.0007s1855' => 'cru', 'Ca_07808_v3' => 'car', 'Ca_09535_v3' => 'car', 'Ca_10548_v3' => 'car', 'Ca_19913_v3' => 'car', 'Ca_19916_v3' => 'car', 'Ca_19975_v3' => 'car', 'CBR_g22876' => 'cbr', 'CBR_g22879' => 'cbr', 'CBR_g38491' => 'cbr', 'CBR_g54185' => 'cbr', 'CBR_g54190' => 'cbr', 'Cc02_g11020' => 'ccan', 'Cc02_g23920' => 'ccan', 'Cc02_g39860' => 'ccan', 'Cc02_g39870' => 'ccan', 'Cc03_g06760' => 'ccan', 'Cc06_g02450' => 'ccan', 'Cc09_g09450' => 'ccan', 'CDE02G1959' => 'cde', 'CDE04G0600' => 'cde', 'CDE07G1996' => 'cde', 'CDE07G2078' => 'cde', 'CDE11G0611' => 'cde', 'Cfa001683' => 'cfa', 'Cfa001734' => 'cfa', 'Cfa001737' => 'cfa', 'Cfa003751' => 'cfa', 'Cfa012019' => 'cfa', 'Cfa017353' => 'cfa', 'Cfa017732' => 'cfa', 'Cfa022464' => 'cfa', 'Ciclev10012400m.g' => 'ccl', 'Ciclev10021242m.g' => 'ccl', 'Ciclev10021302m.g' => 'ccl', 'Ciclev10021463m.g' => 'ccl', 'Ciclev10032359m.g' => 'ccl', 'CiPaw.01G081000' => 'cil', 'CiPaw.01G262500' => 'cil', 'CiPaw.01G269800' => 'cil', 'CiPaw.02G168400' => 'cil', 'CiPaw.05G119500' => 'cil', 'CiPaw.11G147300' => 'cil', 'ClCG01G003630' => 'cla', 'ClCG05G000510' => 'cla', 'ClCG05G002300' => 'cla', 'ClCG08G007650' => 'cla', 'ClCG10G021250' => 'cla', 'COL.COLO4_06218' => 'col', 'COL.COLO4_12538' => 'col', 'COL.COLO4_14775' => 'col', 'COL.COLO4_23875' => 'col', 'Cpa.g.sc141.16' => 'cpa', 'Cpa.g.sc169.16' => 'cpa', 'Cpa.g.sc244.4' => 'cpa', 'Cpa.g.sc244.5' => 'cpa', 'Cpa.g.sc29.87' => 'cpa', 'Cpa.g.sc53.115' => 'cpa', 'Cre03.g207502' => 'cre', 'Cre06.g277000' => 'cre', 'Cre09.g394050' => 'cre', 'CsaV3_3G007680' => 'csa', 'CsaV3_3G009710' => 'csa', 'CsaV3_3G034790' => 'csa', 'CsaV3_5G003750' => 'csa', 'CsaV3_6G036620' => 'csa', 'CSS0002288' => 'camsi', 'CSS0011250' => 'camsi', 'CSS0021619' => 'camsi', 'CSS0046701' => 'camsi', 'DCAR_006420' => 'dca', 'DCAR_006865' => 'dca', 'DCAR_008558' => 'dca', 'DCAR_028754' => 'dca', 'DCAR_028755' => 'dca', 'Dinv31218' => 'din', 'Dinv32371' => 'din', 'Dinv34250' => 'din', 'Dinv37156' => 'din', 'Dinv43704' => 'din', 'Duzib093G1811' => 'dzi', 'Duzib106G1622' => 'dzi', 'Duzib114G0504' => 'dzi', 'Duzib128G0338' => 'dzi', 'Duzib128G1577' => 'dzi', 'Duzib133G0104' => 'dzi', 'Duzib133G1080' => 'dzi', 'Duzib138G0324' => 'dzi', 'Duzib138G0394' => 'dzi', 'Duzib205G0122' => 'dzi', 'Duzib268G1020' => 'dzi', 'Duzib268G1359' => 'dzi', 'ECA232G3929' => 'eca', 'ECA236G2210' => 'eca', 'ECA236G2287' => 'eca', 'ECA240G4568' => 'eca', 'ECA247G0894' => 'eca', 'EL10Ac1g00200' => 'bvu', 'EL10Ac1g00886' => 'bvu', 'EL10As1g23091' => 'bvu', 'EL10As1g23092' => 'bvu', 'Eucgr.A01284' => 'egr', 'Eucgr.A01285' => 'egr', 'Eucgr.D02456' => 'egr', 'Eucgr.E00018' => 'egr', 'Eucgr.E01439' => 'egr', 'Eucgr.G02859' => 'egr', 'FAN01G0168' => 'fan', 'FAN01G0453' => 'fan', 'FAN01G2761' => 'fan', 'FAN02G1239' => 'fan', 'FAN03G0645' => 'fan', 'FAN03G2707' => 'fan', 'FAN03G2978' => 'fan', 'FAN04G0227' => 'fan', 'FAN06G0091' => 'fan', 'FAN06G1418' => 'fan', 'FAN06G1512' => 'fan', 'FAN06G1986' => 'fan', 'FAN06G2905' => 'fan', 'FAN06G4325' => 'fan', 'FAN08G0033' => 'fan', 'FAN09G0642' => 'fan', 'FAN10G1763' => 'fan', 'FAN10G2026' => 'fan', 'FAN10G2513' => 'fan', 'FAN10G3402' => 'fan', 'FAN10G3564' => 'fan', 'FAN10G3987' => 'fan', 'FAN13G1490' => 'fan', 'FAN14G5857' => 'fan', 'FAN18G1188' => 'fan', 'FvH4_5g00750' => 'fve', 'FvH4_6g13410' => 'fve', 'FvH4_7g11740' => 'fve', 'FvH4_7g17410' => 'fve', 'FvH4_7g18860' => 'fve', 'Glyma.01G099100' => 'gma', 'Glyma.01G142300' => 'gma', 'Glyma.03G025500' => 'gma', 'Glyma.03G069700' => 'gma', 'Glyma.03G260000' => 'gma', 'Glyma.09G269800' => 'gma', 'Glyma.10G208700' => 'gma', 'Glyma.18G220400' => 'gma', 'Glyma.20G182000' => 'gma', 'Gohir.A01G221726' => 'ghi', 'Gohir.A07G134600' => 'ghi', 'Gohir.A07G146000' => 'ghi', 'Gohir.A08G173900' => 'ghi', 'Gohir.A09G194900' => 'ghi', 'Gohir.A10G204100' => 'ghi', 'Gohir.A11G080600' => 'ghi', 'Gohir.A11G327500' => 'ghi', 'Gohir.A12G101800' => 'ghi', 'Gohir.D01G211200' => 'ghi', 'Gohir.D07G139200' => 'ghi', 'Gohir.D07G152100' => 'ghi', 'Gohir.D08G192600' => 'ghi', 'Gohir.D09G189200' => 'ghi', 'Gohir.D10G212000' => 'ghi', 'Gohir.D11G085200' => 'ghi', 'Gohir.D11G346400' => 'ghi', 'Gohir.D12G104800' => 'ghi', 'Gorai.001G151300' => 'gra', 'Gorai.001G174100' => 'gra', 'Gorai.002G257000' => 'gra', 'Gorai.004G202600' => 'gra', 'Gorai.007G090900' => 'gra', 'Gorai.007G376700' => 'gra', 'Gorai.008G114100' => 'gra', 'Gorai.011G237900' => 'gra', 'GSVIVG01005450001' => 'vvi', 'GSVIVG01016232001' => 'vvi', 'GSVIVG01026157001' => 'vvi', 'GSVIVG01027419001' => 'vvi', 'GSVIVG01027631001' => 'vvi', 'GSVIVG01034143001' => 'vvi', 'HanXRQChr03g0093921' => 'han', 'HanXRQChr04g0120001' => 'han', 'HanXRQChr04g0122561' => 'han', 'HanXRQChr09g0246851' => 'han', 'HanXRQChr10g0293311' => 'han', 'HanXRQChr13g0425231' => 'han', 'HanXRQChr16g0532571' => 'han', 'Haze_09050' => 'cav', 'Haze_15715' => 'cav', 'Haze_15716' => 'cav', 'Haze_16803' => 'cav', 'Haze_16850' => 'cav', 'Hma1.2p1_0301F.1_g118655' => 'hma', 'Hma1.2p1_0309F.1_g120590' => 'hma', 'Hma1.2p1_0936F.1_g238900' => 'hma', 'Hma1.2p1_3552F.1_g336740' => 'hma', 'HPP92_003520' => 'vpl', 'HPP92_006628' => 'vpl', 'HPP92_006645' => 'vpl', 'HPP92_014669' => 'vpl', 'HPP92_015077' => 'vpl', 'Hund16742' => 'sun', 'Hund17022' => 'sun', 'Lalb_Chr02g0152131' => 'lal', 'Lalb_Chr05g0225371' => 'lal', 'Lalb_Chr07g0189841' => 'lal', 'Lalb_Chr07g0192961' => 'lal', 'Lalb_Chr12g0208221' => 'lal', 'Lalb_Chr13g0291211' => 'lal', 'Lalb_Chr13g0291781' => 'lal', 'Lalb_Chr18g0044651' => 'lal', 'Lalb_Chr21g0313731' => 'lal', 'Lj1g0022533' => 'lja', 'Lj2A18T50' => 'lonja', 'Lj2A92G93' => 'lonja', 'Lj3A965T73' => 'lonja', 'Lj3g0000673' => 'lja', 'Lj3g0002666' => 'lja', 'Lj4g0016985' => 'lja', 'Lj5g0003625' => 'lja', 'Lj7A529G36' => 'lonja', 'Lj9A569T49' => 'lonja', 'Lj9A604T63' => 'lonja', 'Lsat_1_v5_gn_3_132060' => 'lsa', 'Lsat_1_v5_gn_4_68941' => 'lsa', 'Lsat_1_v5_gn_5_95580' => 'lsa', 'Lsat_1_v5_gn_7_161' => 'lsa', 'Lsat_1_v5_gn_7_7041' => 'lsa', 'Lsat_1_v5_gn_9_33481' => 'lsa', 'Lsat_1_v5_gn_9_68260' => 'lsa', 'Manes.01G073100' => 'mes', 'Manes.01G266300' => 'mes', 'Manes.02G033300' => 'mes', 'Manes.05G017900' => 'mes', 'Manes.05G046100' => 'mes', 'Manes.08G080900' => 'mes', 'Manes.10G049400' => 'mes', 'Mapoly0009s0186' => 'mpo', 'Mapoly0036s0118' => 'mpo', 'Mapoly0101s0046' => 'mpo', 'MBI04_g30218_MAGBIO' => 'mbi', 'MBI04_g35564_MAGBIO' => 'mbi', 'MBI12_g34011_MAGBIO' => 'mbi', 'MBI14_g04655_MAGBIO' => 'mbi', 'MCO07G653' => 'mco', 'MCO10G173' => 'mco', 'MD01G1087100' => 'mdo', 'MD01G1104200' => 'mdo', 'MD02G1205100' => 'mdo', 'MD04G1079200' => 'mdo', 'MD04G1131400' => 'mdo', 'MD07G1121600' => 'mdo', 'MD07G1157300' => 'mdo', 'MD07G1171000' => 'mdo', 'MD12G1144500' => 'mdo', 'Medtr1g094610' => 'mtr', 'Medtr4g021795' => 'mtr', 'Medtr4g023760' => 'mtr', 'Medtr7g118050' => 'mtr', 'MELO3C005582.2' => 'cme', 'MELO3C005989.2' => 'cme', 'MELO3C006192.2' => 'cme', 'MELO3C009248.2' => 'cme', 'MELO3C019817.2' => 'cme', 'Migut.B01625' => 'egut', 'Migut.B01915' => 'egut', 'Migut.F01721' => 'egut', 'Migut.J00314' => 'egut', 'MSTRG.20742' => 'ama', 'MSTRG.8134' => 'ama', 'Nitab4.5_0000096g0010' => 'nta', 'Nitab4.5_0000202g0030' => 'nta', 'Nitab4.5_0000216g0370' => 'nta', 'Nitab4.5_0000457g0230' => 'nta', 'Nitab4.5_0001702g0170' => 'nta', 'Nitab4.5_0003607g0010' => 'nta', 'Nitab4.5_0004917g0020' => 'nta', 'Nitab4.5_0007059g0010' => 'nta', 'Nitab4.5_0007184g0010' => 'nta', 'Nitab4.5_0007346g0020' => 'nta', 'Nn1g00410' => 'nnu', 'Nn1g01252' => 'nnu', 'Nn2g11168' => 'nnu', 'Nn2g13403' => 'nnu', 'Nn2g13760' => 'nnu', 'Nn4g26380' => 'nnu', 'Oeu000806.2' => 'oeu', 'Oeu005788.1' => 'oeu', 'Oeu006900.3' => 'oeu', 'Oeu007797.1' => 'oeu', 'Oeu011932.1' => 'oeu', 'Oeu022739.1' => 'oeu', 'Oeu037918.1' => 'oeu', 'Oeu055490.2' => 'oeu', 'Os01g0844400' => 'osa', 'Os02g0819100' => 'osa', 'Os03g0804300' => 'osa', 'Os05g0458000' => 'osa', 'Os07g0467800' => 'osa', 'Os12g0602200' => 'osa', 'Peaxi162Scf00013g03444' => 'pax', 'Peaxi162Scf00094g01120' => 'pax', 'Peaxi162Scf00191g01211' => 'pax', 'Peaxi162Scf00238g01110' => 'pax', 'Peaxi162Scf00330g00719' => 'pax', 'Peaxi162Scf00627g00018' => 'pax', 'PGR031G2686' => 'pgr', 'PGR042G0809' => 'pgr', 'PGR142G0193' => 'pgr', 'PGSC0003DMG400011066' => 'stu', 'PGSC0003DMG400012041' => 'stu', 'PGSC0003DMG400013678' => 'stu', 'PGSC0003DMG400023477' => 'stu', 'PGSC0003DMG400025956' => 'stu', 'PGSC0003DMG401019151' => 'stu', 'Phvul.006G116400' => 'pvu', 'Phvul.007G097300' => 'pvu', 'Phvul.010G015000' => 'pvu', 'Phvul.010G083900' => 'pvu', 'Potri.001G117100' => 'ptr', 'Potri.002G147300' => 'ptr', 'Potri.003G115600' => 'ptr', 'Potri.006G087400' => 'ptr', 'Potri.010G226100' => 'ptr', 'Potri.014G069200' => 'ptr', 'Potri.014G104000' => 'ptr', 'Potri.016G100200' => 'ptr', 'Pp3c10_20450' => 'ppa', 'Pp3c1_42400' => 'ppa', 'Pp3c3_24390' => 'ppa', 'Pp3c3_2860' => 'ppa', 'PRCOL_00003193' => 'pco', 'Prupe.2G144500' => 'ppe', 'Prupe.2G195700' => 'ppe', 'Prupe.2G209800' => 'ppe', 'Prupe.5G080000' => 'ppe', 'Prupe.6G257900' => 'ppe', 'Psat3g001160' => 'psa', 'Psat6g181880' => 'psa', 'Psat7g233720' => 'psa', 'PSO063G7587' => 'pso', 'PSO339G2145' => 'pso', 'PSO339G3369' => 'pso', 'PSO478G2747' => 'pso', 'PSO513G0140' => 'pso', 'PSO782G1614' => 'pso', 'PSO782G4889' => 'pso', 'PSO782G5485' => 'pso', 'PSO801G0241' => 'pso', 'QL07p048854' => 'qlo', 'QL08p046745' => 'qlo', 'QL08p052606' => 'qlo', 'QL08p053414' => 'qlo', 'QL08p054868' => 'qlo', 'RcHm_v2.0_Chr1g0350251' => 'rch', 'RcHm_v2.0_Chr1g0360851' => 'rch', 'RcHm_v2.0_Chr1g0362791' => 'rch', 'RcHm_v2.0_Chr3g0466281' => 'rch', 'RcHm_v2.0_Chr7g0201481' => 'rch', 'Rhsim01G0148600' => 'rsi', 'Rhsim05G0194400' => 'rsi', 'Rhsim07G0000700' => 'rsi', 'Rhsim07G0000800' => 'rsi', 'Rhsim07G0027900' => 'rsi', 'Rhsim09G0149500' => 'rsi', 'RhsimUnG0186900' => 'rsi', 'Sabra01G0089900' => 'sbr', 'Sabra02G0114700' => 'sbr', 'Sabra02G0116300' => 'sbr', 'Sabra03G0080100' => 'sbr', 'Sabra08G0024300' => 'sbr', 'Sabra10G0174300' => 'sbr', 'Sabra14G0048900' => 'sbr', 'Sabra14G0076500' => 'sbr', 'SalBow5G2513' => 'sbo', 'Sc01g0002300' => 'sci', 'Sc01g0004450' => 'sci', 'Sc06g0001680' => 'sci', 'Sc23g0003580' => 'sci', 'Sed0000913' => 'sed', 'Sed0001655' => 'sed', 'Sed0007745' => 'sed', 'Sed0010951' => 'sed', 'Sed0017599' => 'sed', 'Sed0021405' => 'sed', 'Sed0022810' => 'sed', 'SEGI_07099' => 'sgi', 'SEGI_11931' => 'sgi', 'SEGI_13187' => 'sgi', 'SEGI_29958' => 'sgi', 'SEGI_36351' => 'sgi', 'SGA_v2.0_scaffold126G33770' => 'sas', 'SGA_v2.0_scaffold153G37003' => 'sas', 'SGA_v2.0_scaffold2G01359' => 'sas', 'SGA_v2.0_scaffold5G03064' => 'sas', 'SGA_v2.0_scaffold95G28903' => 'sas', 'SHI12701' => 'shi', 'SHI26410' => 'shi', 'SHI38997' => 'shi', 'SHI53759' => 'shi', 'SHI53886' => 'shi', 'SHI54714' => 'shi', 'SMO011G0041' => 'smo', 'SMO146G0251' => 'smo', 'SMO160G0004' => 'smo', 'SMO174G0057' => 'smo', 'SMO244G0089' => 'smo', 'SMO296G0011' => 'smo', 'Solyc01g091280.3' => 'sly', 'Solyc05g047610.3' => 'sly', 'Solyc05g047640.3' => 'sly', 'Solyc05g055630.3' => 'sly', 'Solyc10g018160.2' => 'sly', 'Solyc10g084820.2' => 'sly', 'Solyc10g086565.2' => 'sly', 'Sopen01g037030' => 'spe', 'Sopen05g027920' => 'spe', 'Sopen05g034070' => 'spe', 'Sopen10g007260' => 'spe', 'Sopen10g034260' => 'spe', 'Sopen10g035950' => 'spe', 'Sp3g07710' => 'spa', 'Sp4g27420' => 'spa', 'Sp5g02450' => 'spa', 'Sp6g01280' => 'spa', 'Sp6g38480' => 'spa', 'Sp7g20780' => 'spa', 'TAR374G1413' => 'tar', 'TAR623G1777' => 'tar', 'TAR629G2370' => 'tar', 'TAR633G1759' => 'tar', 'TAR636G3387' => 'tar', 'THA.LOC104802447' => 'tha', 'THA.LOC104813916' => 'tha', 'THA.LOC104816423' => 'tha', 'THA.LOC104817246' => 'tha', 'THA.LOC104825895' => 'tha', 'Thecc.01G335200' => 'tca', 'Thecc.01G377400' => 'tca', 'Thecc.03G262200' => 'tca', 'Thecc.05G036800' => 'tca', 'Thecc.10G080500' => 'tca', 'Thecc.10G080800' => 'tca', 'Thhalv10001560m.g' => 'esa', 'Thhalv10006120m.g' => 'esa', 'Thhalv10014375m.g' => 'esa', 'Thhalv10021264m.g' => 'esa', 'Thhalv10028856m.g' => 'esa', 'TPR.G1914' => 'tpr', 'TPR.G4757' => 'tpr', 'TPR.G5595' => 'tpr', 'TWI14G0952' => 'twi', 'TWI14G1307' => 'twi', 'TWI38G2143' => 'twi', 'TWI59G0826' => 'twi', 'TWI77G0527' => 'twi', 'TWI81G0150' => 'twi', 'unitig_21.g21018' => 'ugi', 'unitig_26.g9725' => 'ugi', 'unitig_744.g24653' => 'ugi', 'unitig_749.g13778' => 'ugi', 'unitig_899.g15035' => 'ugi', 'vmacro04296' => 'vma', 'vmacro04852' => 'vma', 'vmacro13404' => 'vma', 'vmacro20169' => 'vma', 'vmacro21014' => 'vma', 'VMungo0331G0237' => 'vmu', 'VMungo0331G0706' => 'vmu', 'VMungo0331G1361' => 'vmu', 'VMungo0331G1489' => 'vmu', 'VMungo0540G1037' => 'vmu', 'VMungo0720G2487' => 'vmu', 'VMungo0720G2721' => 'vmu', 'Zm00001eb086860' => 'zma', 'Zm00001eb104760' => 'zma', 'Zm00001eb148220' => 'zma', 'Zm00001eb259030' => 'zma', 'Zm00001eb289590' => 'zma', 'Zm00001eb420150' => 'zma' ), 'gf_id' => 'HOM05D000968', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000968' ), 'data_identifier' => 'HOM05D000968', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000968', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p31690' => 'bna', 'A03p36040' => 'bna', 'A03p53730' => 'bna', 'A04p01410' => 'bna', 'A05p05420' => 'bna', 'A05p39630' => 'bna', 'A05p39640' => 'bna', 'A09p00970' => 'bna', 'A09p53060' => 'bna', 'A10p31890' => 'bna', 'Aa31LG10G15040' => 'aar', 'Aa31LG1G21090' => 'aar', 'Aa31LG1G26900' => 'aar', 'Aa31LG3G1820' => 'aar', 'Aa31LG5G1100' => 'aar', 'Aa31LG6G4740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2265' => 'aag', 'Actinidia07998' => 'ach', 'Actinidia11266' => 'ach', 'Actinidia12682' => 'ach', 'Actinidia26479' => 'ach', 'Actinidia31406' => 'ach', 'Actinidia32437' => 'ach', 'Actinidia38862' => 'ach', 'Ah.05g174230' => 'amhyb', 'Ah.05g179070' => 'amhyb', 'Ah.05g179090' => 'amhyb', 'Ah.12g059950' => 'amhyb', 'AL3G20480' => 'aly', 'AL4G44520' => 'aly', 'AL5G43110' => 'aly', 'AL6G13890' => 'aly', 'AL6G52620' => 'aly', 'AL7G30830' => 'aly', 'Aqoxy1G00899' => 'aox', 'Aqoxy5G04333' => 'aox', 'Aqoxy7G00641' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3IZ0NN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4EF6AW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W9P8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79GA3M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C43NQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFCU6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G95YVJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCHK29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LU1UG8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX91RN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGB4B1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8DA0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9H7JI' => 'arhy', 'AT3G09320' => 'ath', 'AT3G60800' => 'ath', 'AT4G00840' => 'ath', 'AT4G22750' => 'ath', 'AT5G04270' => 'ath', 'ATR0090G003' => 'atr', 'ATR0559G349' => 'atr', 'ATR0680G261' => 'atr', 'ATR0810G048' => 'atr', 'Atru.chr12.831' => 'acertr', 'Atru.chr5.303' => 'acertr', 'Atru.chr5.748' => 'acertr', 'Atru.chr8.1999' => 'acertr', 'Atru.chr9.1436' => 'acertr', 'AUR62004211' => 'cqu', 'AUR62004548' => 'cqu', 'AUR62013637' => 'cqu', 'AUR62022662' => 'cqu', 'AUR62025777' => 'cqu', 'AUR62042386' => 'cqu', 'BcaB01g02310' => 'bca', 'BcaB01g06062' => 'bca', 'BcaB02g08975' => 'bca', 'BcaB02g08980' => 'bca', 'BcaC01g04228' => 'bca', 'BcaC01g06830' => 'bca', 'BcaC02g10186' => 'bca', 'BcaC02g12214' => 'bca', 'BcaC04g24101' => 'bca', 'BcaC05g29520' => 'bca', 'BcaC05g29661' => 'bca', 'BcaC06g32130' => 'bca', 'BcaC06g32131' => 'bca', 'BcaC07g40601' => 'bca', 'BcaC07g42641' => 'bca', 'BcaNung01038' => 'bca', 'BcaNung01676' => 'bca', 'BcaNung02480' => 'bca', 'BcaNung07376' => 'bca', 'BolC3t16146H' => 'bol', 'BolC3t16637H' => 'bol', 'BolC4t22257H' => 'bol', 'BolC4t24728H' => 'bol', 'BolC5t34517H' => 'bol', 'BolC7t45703H' => 'bol', 'BolC8t51166H' => 'bol', 'BolC9t53038H' => 'bol', 'BolC9t60000H' => 'bol', 'BraA01t01345Z' => 'bra', 'BraA01t01346Z' => 'bra', 'BraA01t01348Z' => 'bra', 'BraA03t12347Z' => 'bra', 'BraA03t12775Z' => 'bra', 'BraA03t14439Z' => 'bra', 'BraA04t15860Z' => 'bra', 'BraA05t19511Z' => 'bra', 'BraA05t22746Z' => 'bra', 'BraA09t35767Z' => 'bra', 'BraA09t40732Z' => 'bra', 'BraA10t45233Z' => 'bra', 'C03p38720' => 'bna', 'C03p43680' => 'bna', 'C04p06350' => 'bna', 'C04p31800' => 'bna', 'C05p58680' => 'bna', 'C07p52110' => 'bna', 'C08p35760' => 'bna', 'C09p01050' => 'bna', 'C09p72600' => 'bna', 'CAN.G106.2' => 'can', 'CAN.G1482.1' => 'can', 'CAN.G324.12' => 'can', 'CAN.G388.20' => 'can', 'CAN.G412.7' => 'can', 'CAN.G694.32' => 'can', 'CAN.G92.12' => 'can', 'CANSAT11G2353' => 'cansat', 'CANSAT21G1398' => 'cansat', 'CANSAT56G2456' => 'cansat', 'CANSAT56G3031' => 'cansat', 'CANSAT56G4539' => 'cansat', 'CARHR083680' => 'chi', 'CARHR171190' => 'chi', 'CARHR209010' => 'chi', 'CARHR229680' => 'chi', 'CARHR249490' => 'chi', 'Carub.0003s0844' => 'cru', 'Carub.0005s2755' => 'cru', 'Carub.0006s0322' => 'cru', 'Carub.0006s3586' => 'cru', 'Carub.0007s1855' => 'cru', 'Ca_07808_v3' => 'car', 'Ca_09535_v3' => 'car', 'Ca_10548_v3' => 'car', 'Ca_19913_v3' => 'car', 'Ca_19916_v3' => 'car', 'Ca_19975_v3' => 'car', 'CBR_g22876' => 'cbr', 'CBR_g22879' => 'cbr', 'CBR_g38491' => 'cbr', 'CBR_g54185' => 'cbr', 'CBR_g54190' => 'cbr', 'Cc02_g11020' => 'ccan', 'Cc02_g23920' => 'ccan', 'Cc02_g39860' => 'ccan', 'Cc02_g39870' => 'ccan', 'Cc03_g06760' => 'ccan', 'Cc06_g02450' => 'ccan', 'Cc09_g09450' => 'ccan', 'CDE02G1959' => 'cde', 'CDE04G0600' => 'cde', 'CDE07G1996' => 'cde', 'CDE07G2078' => 'cde', 'CDE11G0611' => 'cde', 'Cfa001683' => 'cfa', 'Cfa001734' => 'cfa', 'Cfa001737' => 'cfa', 'Cfa003751' => 'cfa', 'Cfa012019' => 'cfa', 'Cfa017353' => 'cfa', 'Cfa017732' => 'cfa', 'Cfa022464' => 'cfa', 'Ciclev10012400m.g' => 'ccl', 'Ciclev10021242m.g' => 'ccl', 'Ciclev10021302m.g' => 'ccl', 'Ciclev10021463m.g' => 'ccl', 'Ciclev10032359m.g' => 'ccl', 'CiPaw.01G081000' => 'cil', 'CiPaw.01G262500' => 'cil', 'CiPaw.01G269800' => 'cil', 'CiPaw.02G168400' => 'cil', 'CiPaw.05G119500' => 'cil', 'CiPaw.11G147300' => 'cil', 'ClCG01G003630' => 'cla', 'ClCG05G000510' => 'cla', 'ClCG05G002300' => 'cla', 'ClCG08G007650' => 'cla', 'ClCG10G021250' => 'cla', 'COL.COLO4_06218' => 'col', 'COL.COLO4_12538' => 'col', 'COL.COLO4_14775' => 'col', 'COL.COLO4_23875' => 'col', 'Cpa.g.sc141.16' => 'cpa', 'Cpa.g.sc169.16' => 'cpa', 'Cpa.g.sc244.4' => 'cpa', 'Cpa.g.sc244.5' => 'cpa', 'Cpa.g.sc29.87' => 'cpa', 'Cpa.g.sc53.115' => 'cpa', 'Cre03.g207502' => 'cre', 'Cre06.g277000' => 'cre', 'Cre09.g394050' => 'cre', 'CsaV3_3G007680' => 'csa', 'CsaV3_3G009710' => 'csa', 'CsaV3_3G034790' => 'csa', 'CsaV3_5G003750' => 'csa', 'CsaV3_6G036620' => 'csa', 'CSS0002288' => 'camsi', 'CSS0011250' => 'camsi', 'CSS0021619' => 'camsi', 'CSS0046701' => 'camsi', 'DCAR_006420' => 'dca', 'DCAR_006865' => 'dca', 'DCAR_008558' => 'dca', 'DCAR_028754' => 'dca', 'DCAR_028755' => 'dca', 'Dinv31218' => 'din', 'Dinv32371' => 'din', 'Dinv34250' => 'din', 'Dinv37156' => 'din', 'Dinv43704' => 'din', 'Duzib093G1811' => 'dzi', 'Duzib106G1622' => 'dzi', 'Duzib114G0504' => 'dzi', 'Duzib128G0338' => 'dzi', 'Duzib128G1577' => 'dzi', 'Duzib133G0104' => 'dzi', 'Duzib133G1080' => 'dzi', 'Duzib138G0324' => 'dzi', 'Duzib138G0394' => 'dzi', 'Duzib205G0122' => 'dzi', 'Duzib268G1020' => 'dzi', 'Duzib268G1359' => 'dzi', 'ECA232G3929' => 'eca', 'ECA236G2210' => 'eca', 'ECA236G2287' => 'eca', 'ECA240G4568' => 'eca', 'ECA247G0894' => 'eca', 'EL10Ac1g00200' => 'bvu', 'EL10Ac1g00886' => 'bvu', 'EL10As1g23091' => 'bvu', 'EL10As1g23092' => 'bvu', 'Eucgr.A01284' => 'egr', 'Eucgr.A01285' => 'egr', 'Eucgr.D02456' => 'egr', 'Eucgr.E00018' => 'egr', 'Eucgr.E01439' => 'egr', 'Eucgr.G02859' => 'egr', 'FAN01G0168' => 'fan', 'FAN01G0453' => 'fan', 'FAN01G2761' => 'fan', 'FAN02G1239' => 'fan', 'FAN03G0645' => 'fan', 'FAN03G2707' => 'fan', 'FAN03G2978' => 'fan', 'FAN04G0227' => 'fan', 'FAN06G0091' => 'fan', 'FAN06G1418' => 'fan', 'FAN06G1512' => 'fan', 'FAN06G1986' => 'fan', 'FAN06G2905' => 'fan', 'FAN06G4325' => 'fan', 'FAN08G0033' => 'fan', 'FAN09G0642' => 'fan', 'FAN10G1763' => 'fan', 'FAN10G2026' => 'fan', 'FAN10G2513' => 'fan', 'FAN10G3402' => 'fan', 'FAN10G3564' => 'fan', 'FAN10G3987' => 'fan', 'FAN13G1490' => 'fan', 'FAN14G5857' => 'fan', 'FAN18G1188' => 'fan', 'FvH4_5g00750' => 'fve', 'FvH4_6g13410' => 'fve', 'FvH4_7g11740' => 'fve', 'FvH4_7g17410' => 'fve', 'FvH4_7g18860' => 'fve', 'Glyma.01G099100' => 'gma', 'Glyma.01G142300' => 'gma', 'Glyma.03G025500' => 'gma', 'Glyma.03G069700' => 'gma', 'Glyma.03G260000' => 'gma', 'Glyma.09G269800' => 'gma', 'Glyma.10G208700' => 'gma', 'Glyma.18G220400' => 'gma', 'Glyma.20G182000' => 'gma', 'Gohir.A01G221726' => 'ghi', 'Gohir.A07G134600' => 'ghi', 'Gohir.A07G146000' => 'ghi', 'Gohir.A08G173900' => 'ghi', 'Gohir.A09G194900' => 'ghi', 'Gohir.A10G204100' => 'ghi', 'Gohir.A11G080600' => 'ghi', 'Gohir.A11G327500' => 'ghi', 'Gohir.A12G101800' => 'ghi', 'Gohir.D01G211200' => 'ghi', 'Gohir.D07G139200' => 'ghi', 'Gohir.D07G152100' => 'ghi', 'Gohir.D08G192600' => 'ghi', 'Gohir.D09G189200' => 'ghi', 'Gohir.D10G212000' => 'ghi', 'Gohir.D11G085200' => 'ghi', 'Gohir.D11G346400' => 'ghi', 'Gohir.D12G104800' => 'ghi', 'Gorai.001G151300' => 'gra', 'Gorai.001G174100' => 'gra', 'Gorai.002G257000' => 'gra', 'Gorai.004G202600' => 'gra', 'Gorai.007G090900' => 'gra', 'Gorai.007G376700' => 'gra', 'Gorai.008G114100' => 'gra', 'Gorai.011G237900' => 'gra', 'GSVIVG01005450001' => 'vvi', 'GSVIVG01016232001' => 'vvi', 'GSVIVG01026157001' => 'vvi', 'GSVIVG01027419001' => 'vvi', 'GSVIVG01027631001' => 'vvi', 'GSVIVG01034143001' => 'vvi', 'HanXRQChr03g0093921' => 'han', 'HanXRQChr04g0120001' => 'han', 'HanXRQChr04g0122561' => 'han', 'HanXRQChr09g0246851' => 'han', 'HanXRQChr10g0293311' => 'han', 'HanXRQChr13g0425231' => 'han', 'HanXRQChr16g0532571' => 'han', 'Haze_09050' => 'cav', 'Haze_15715' => 'cav', 'Haze_15716' => 'cav', 'Haze_16803' => 'cav', 'Haze_16850' => 'cav', 'Hma1.2p1_0301F.1_g118655' => 'hma', 'Hma1.2p1_0309F.1_g120590' => 'hma', 'Hma1.2p1_0936F.1_g238900' => 'hma', 'Hma1.2p1_3552F.1_g336740' => 'hma', 'HPP92_003520' => 'vpl', 'HPP92_006628' => 'vpl', 'HPP92_006645' => 'vpl', 'HPP92_014669' => 'vpl', 'HPP92_015077' => 'vpl', 'Hund16742' => 'sun', 'Hund17022' => 'sun', 'Lalb_Chr02g0152131' => 'lal', 'Lalb_Chr05g0225371' => 'lal', 'Lalb_Chr07g0189841' => 'lal', 'Lalb_Chr07g0192961' => 'lal', 'Lalb_Chr12g0208221' => 'lal', 'Lalb_Chr13g0291211' => 'lal', 'Lalb_Chr13g0291781' => 'lal', 'Lalb_Chr18g0044651' => 'lal', 'Lalb_Chr21g0313731' => 'lal', 'Lj1g0022533' => 'lja', 'Lj2A18T50' => 'lonja', 'Lj2A92G93' => 'lonja', 'Lj3A965T73' => 'lonja', 'Lj3g0000673' => 'lja', 'Lj3g0002666' => 'lja', 'Lj4g0016985' => 'lja', 'Lj5g0003625' => 'lja', 'Lj7A529G36' => 'lonja', 'Lj9A569T49' => 'lonja', 'Lj9A604T63' => 'lonja', 'Lsat_1_v5_gn_3_132060' => 'lsa', 'Lsat_1_v5_gn_4_68941' => 'lsa', 'Lsat_1_v5_gn_5_95580' => 'lsa', 'Lsat_1_v5_gn_7_161' => 'lsa', 'Lsat_1_v5_gn_7_7041' => 'lsa', 'Lsat_1_v5_gn_9_33481' => 'lsa', 'Lsat_1_v5_gn_9_68260' => 'lsa', 'Manes.01G073100' => 'mes', 'Manes.01G266300' => 'mes', 'Manes.02G033300' => 'mes', 'Manes.05G017900' => 'mes', 'Manes.05G046100' => 'mes', 'Manes.08G080900' => 'mes', 'Manes.10G049400' => 'mes', 'Mapoly0009s0186' => 'mpo', 'Mapoly0036s0118' => 'mpo', 'Mapoly0101s0046' => 'mpo', 'MBI04_g30218_MAGBIO' => 'mbi', 'MBI04_g35564_MAGBIO' => 'mbi', 'MBI12_g34011_MAGBIO' => 'mbi', 'MBI14_g04655_MAGBIO' => 'mbi', 'MCO07G653' => 'mco', 'MCO10G173' => 'mco', 'MD01G1087100' => 'mdo', 'MD01G1104200' => 'mdo', 'MD02G1205100' => 'mdo', 'MD04G1079200' => 'mdo', 'MD04G1131400' => 'mdo', 'MD07G1121600' => 'mdo', 'MD07G1157300' => 'mdo', 'MD07G1171000' => 'mdo', 'MD12G1144500' => 'mdo', 'Medtr1g094610' => 'mtr', 'Medtr4g021795' => 'mtr', 'Medtr4g023760' => 'mtr', 'Medtr7g118050' => 'mtr', 'MELO3C005582.2' => 'cme', 'MELO3C005989.2' => 'cme', 'MELO3C006192.2' => 'cme', 'MELO3C009248.2' => 'cme', 'MELO3C019817.2' => 'cme', 'Migut.B01625' => 'egut', 'Migut.B01915' => 'egut', 'Migut.F01721' => 'egut', 'Migut.J00314' => 'egut', 'MSTRG.20742' => 'ama', 'MSTRG.8134' => 'ama', 'Nitab4.5_0000096g0010' => 'nta', 'Nitab4.5_0000202g0030' => 'nta', 'Nitab4.5_0000216g0370' => 'nta', 'Nitab4.5_0000457g0230' => 'nta', 'Nitab4.5_0001702g0170' => 'nta', 'Nitab4.5_0003607g0010' => 'nta', 'Nitab4.5_0004917g0020' => 'nta', 'Nitab4.5_0007059g0010' => 'nta', 'Nitab4.5_0007184g0010' => 'nta', 'Nitab4.5_0007346g0020' => 'nta', 'Nn1g00410' => 'nnu', 'Nn1g01252' => 'nnu', 'Nn2g11168' => 'nnu', 'Nn2g13403' => 'nnu', 'Nn2g13760' => 'nnu', 'Nn4g26380' => 'nnu', 'Oeu000806.2' => 'oeu', 'Oeu005788.1' => 'oeu', 'Oeu006900.3' => 'oeu', 'Oeu007797.1' => 'oeu', 'Oeu011932.1' => 'oeu', 'Oeu022739.1' => 'oeu', 'Oeu037918.1' => 'oeu', 'Oeu055490.2' => 'oeu', 'Os01g0844400' => 'osa', 'Os02g0819100' => 'osa', 'Os03g0804300' => 'osa', 'Os05g0458000' => 'osa', 'Os07g0467800' => 'osa', 'Os12g0602200' => 'osa', 'Peaxi162Scf00013g03444' => 'pax', 'Peaxi162Scf00094g01120' => 'pax', 'Peaxi162Scf00191g01211' => 'pax', 'Peaxi162Scf00238g01110' => 'pax', 'Peaxi162Scf00330g00719' => 'pax', 'Peaxi162Scf00627g00018' => 'pax', 'PGR031G2686' => 'pgr', 'PGR042G0809' => 'pgr', 'PGR142G0193' => 'pgr', 'PGSC0003DMG400011066' => 'stu', 'PGSC0003DMG400012041' => 'stu', 'PGSC0003DMG400013678' => 'stu', 'PGSC0003DMG400023477' => 'stu', 'PGSC0003DMG400025956' => 'stu', 'PGSC0003DMG401019151' => 'stu', 'Phvul.006G116400' => 'pvu', 'Phvul.007G097300' => 'pvu', 'Phvul.010G015000' => 'pvu', 'Phvul.010G083900' => 'pvu', 'Potri.001G117100' => 'ptr', 'Potri.002G147300' => 'ptr', 'Potri.003G115600' => 'ptr', 'Potri.006G087400' => 'ptr', 'Potri.010G226100' => 'ptr', 'Potri.014G069200' => 'ptr', 'Potri.014G104000' => 'ptr', 'Potri.016G100200' => 'ptr', 'Pp3c10_20450' => 'ppa', 'Pp3c1_42400' => 'ppa', 'Pp3c3_24390' => 'ppa', 'Pp3c3_2860' => 'ppa', 'PRCOL_00003193' => 'pco', 'Prupe.2G144500' => 'ppe', 'Prupe.2G195700' => 'ppe', 'Prupe.2G209800' => 'ppe', 'Prupe.5G080000' => 'ppe', 'Prupe.6G257900' => 'ppe', 'Psat3g001160' => 'psa', 'Psat6g181880' => 'psa', 'Psat7g233720' => 'psa', 'PSO063G7587' => 'pso', 'PSO339G2145' => 'pso', 'PSO339G3369' => 'pso', 'PSO478G2747' => 'pso', 'PSO513G0140' => 'pso', 'PSO782G1614' => 'pso', 'PSO782G4889' => 'pso', 'PSO782G5485' => 'pso', 'PSO801G0241' => 'pso', 'QL07p048854' => 'qlo', 'QL08p046745' => 'qlo', 'QL08p052606' => 'qlo', 'QL08p053414' => 'qlo', 'QL08p054868' => 'qlo', 'RcHm_v2.0_Chr1g0350251' => 'rch', 'RcHm_v2.0_Chr1g0360851' => 'rch', 'RcHm_v2.0_Chr1g0362791' => 'rch', 'RcHm_v2.0_Chr3g0466281' => 'rch', 'RcHm_v2.0_Chr7g0201481' => 'rch', 'Rhsim01G0148600' => 'rsi', 'Rhsim05G0194400' => 'rsi', 'Rhsim07G0000700' => 'rsi', 'Rhsim07G0000800' => 'rsi', 'Rhsim07G0027900' => 'rsi', 'Rhsim09G0149500' => 'rsi', 'RhsimUnG0186900' => 'rsi', 'Sabra01G0089900' => 'sbr', 'Sabra02G0114700' => 'sbr', 'Sabra02G0116300' => 'sbr', 'Sabra03G0080100' => 'sbr', 'Sabra08G0024300' => 'sbr', 'Sabra10G0174300' => 'sbr', 'Sabra14G0048900' => 'sbr', 'Sabra14G0076500' => 'sbr', 'SalBow5G2513' => 'sbo', 'Sc01g0002300' => 'sci', 'Sc01g0004450' => 'sci', 'Sc06g0001680' => 'sci', 'Sc23g0003580' => 'sci', 'Sed0000913' => 'sed', 'Sed0001655' => 'sed', 'Sed0007745' => 'sed', 'Sed0010951' => 'sed', 'Sed0017599' => 'sed', 'Sed0021405' => 'sed', 'Sed0022810' => 'sed', 'SEGI_07099' => 'sgi', 'SEGI_11931' => 'sgi', 'SEGI_13187' => 'sgi', 'SEGI_29958' => 'sgi', 'SEGI_36351' => 'sgi', 'SGA_v2.0_scaffold126G33770' => 'sas', 'SGA_v2.0_scaffold153G37003' => 'sas', 'SGA_v2.0_scaffold2G01359' => 'sas', 'SGA_v2.0_scaffold5G03064' => 'sas', 'SGA_v2.0_scaffold95G28903' => 'sas', 'SHI12701' => 'shi', 'SHI26410' => 'shi', 'SHI38997' => 'shi', 'SHI53759' => 'shi', 'SHI53886' => 'shi', 'SHI54714' => 'shi', 'SMO011G0041' => 'smo', 'SMO146G0251' => 'smo', 'SMO160G0004' => 'smo', 'SMO174G0057' => 'smo', 'SMO244G0089' => 'smo', 'SMO296G0011' => 'smo', 'Solyc01g091280.3' => 'sly', 'Solyc05g047610.3' => 'sly', 'Solyc05g047640.3' => 'sly', 'Solyc05g055630.3' => 'sly', 'Solyc10g018160.2' => 'sly', 'Solyc10g084820.2' => 'sly', 'Solyc10g086565.2' => 'sly', 'Sopen01g037030' => 'spe', 'Sopen05g027920' => 'spe', 'Sopen05g034070' => 'spe', 'Sopen10g007260' => 'spe', 'Sopen10g034260' => 'spe', 'Sopen10g035950' => 'spe', 'Sp3g07710' => 'spa', 'Sp4g27420' => 'spa', 'Sp5g02450' => 'spa', 'Sp6g01280' => 'spa', 'Sp6g38480' => 'spa', 'Sp7g20780' => 'spa', 'TAR374G1413' => 'tar', 'TAR623G1777' => 'tar', 'TAR629G2370' => 'tar', 'TAR633G1759' => 'tar', 'TAR636G3387' => 'tar', 'THA.LOC104802447' => 'tha', 'THA.LOC104813916' => 'tha', 'THA.LOC104816423' => 'tha', 'THA.LOC104817246' => 'tha', 'THA.LOC104825895' => 'tha', 'Thecc.01G335200' => 'tca', 'Thecc.01G377400' => 'tca', 'Thecc.03G262200' => 'tca', 'Thecc.05G036800' => 'tca', 'Thecc.10G080500' => 'tca', 'Thecc.10G080800' => 'tca', 'Thhalv10001560m.g' => 'esa', 'Thhalv10006120m.g' => 'esa', 'Thhalv10014375m.g' => 'esa', 'Thhalv10021264m.g' => 'esa', 'Thhalv10028856m.g' => 'esa', 'TPR.G1914' => 'tpr', 'TPR.G4757' => 'tpr', 'TPR.G5595' => 'tpr', 'TWI14G0952' => 'twi', 'TWI14G1307' => 'twi', 'TWI38G2143' => 'twi', 'TWI59G0826' => 'twi', 'TWI77G0527' => 'twi', 'TWI81G0150' => 'twi', 'unitig_21.g21018' => 'ugi', 'unitig_26.g9725' => 'ugi', 'unitig_744.g24653' => 'ugi', 'unitig_749.g13778' => 'ugi', 'unitig_899.g15035' => 'ugi', 'vmacro04296' => 'vma', 'vmacro04852' => 'vma', 'vmacro13404' => 'vma', 'vmacro20169' => 'vma', 'vmacro21014' => 'vma', 'VMungo0331G0237' => 'vmu', 'VMungo0331G0706' => 'vmu', 'VMungo0331G1361' => 'vmu', 'VMungo0331G1489' => 'vmu', 'VMungo0540G1037' => 'vmu', 'VMungo0720G2487' => 'vmu', 'VMungo0720G2721' => 'vmu', 'Zm00001eb086860' => 'zma', 'Zm00001eb104760' => 'zma', 'Zm00001eb148220' => 'zma', 'Zm00001eb259030' => 'zma', 'Zm00001eb289590' => 'zma', 'Zm00001eb420150' => 'zma' ) $gf_id = 'HOM05D000968' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000968' ) $data_identifier = 'HOM05D000968' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 19, 'bol' => (int) 9, 'bra' => (int) 12, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 5, 'ccan' => (int) 7, 'cde' => (int) 5, 'cfa' => (int) 8, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 4, 'dca' => (int) 5, 'din' => (int) 5, 'dzi' => (int) 12, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 25, 'fve' => (int) 5, 'gma' => (int) 9, 'ghi' => (int) 18, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 7, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 5, 'sun' => (int) 2, 'lal' => (int) 9, 'lja' => (int) 5, 'lonja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 9, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 2, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 3, 'stu' => (int) 6, 'pvu' => (int) 4, 'ptr' => (int) 8, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 3, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 1, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 5, 'sas' => (int) 5, 'shi' => (int) 6, 'smo' => (int) 6, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 3, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420150' $species_info = array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ) $local_species = 'tca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000968', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p31690' => 'bna', 'A03p36040' => 'bna', 'A03p53730' => 'bna', 'A04p01410' => 'bna', 'A05p05420' => 'bna', 'A05p39630' => 'bna', 'A05p39640' => 'bna', 'A09p00970' => 'bna', 'A09p53060' => 'bna', 'A10p31890' => 'bna', 'Aa31LG10G15040' => 'aar', 'Aa31LG1G21090' => 'aar', 'Aa31LG1G26900' => 'aar', 'Aa31LG3G1820' => 'aar', 'Aa31LG5G1100' => 'aar', 'Aa31LG6G4740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2265' => 'aag', 'Actinidia07998' => 'ach', 'Actinidia11266' => 'ach', 'Actinidia12682' => 'ach', 'Actinidia26479' => 'ach', 'Actinidia31406' => 'ach', 'Actinidia32437' => 'ach', 'Actinidia38862' => 'ach', 'Ah.05g174230' => 'amhyb', 'Ah.05g179070' => 'amhyb', 'Ah.05g179090' => 'amhyb', 'Ah.12g059950' => 'amhyb', 'AL3G20480' => 'aly', 'AL4G44520' => 'aly', 'AL5G43110' => 'aly', 'AL6G13890' => 'aly', 'AL6G52620' => 'aly', 'AL7G30830' => 'aly', 'Aqoxy1G00899' => 'aox', 'Aqoxy5G04333' => 'aox', 'Aqoxy7G00641' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3IZ0NN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4EF6AW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W9P8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79GA3M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C43NQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFCU6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G95YVJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCHK29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LU1UG8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX91RN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGB4B1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8DA0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9H7JI' => 'arhy', 'AT3G09320' => 'ath', 'AT3G60800' => 'ath', 'AT4G00840' => 'ath', 'AT4G22750' => 'ath', 'AT5G04270' => 'ath', 'ATR0090G003' => 'atr', 'ATR0559G349' => 'atr', 'ATR0680G261' => 'atr', 'ATR0810G048' => 'atr', 'Atru.chr12.831' => 'acertr', 'Atru.chr5.303' => 'acertr', 'Atru.chr5.748' => 'acertr', 'Atru.chr8.1999' => 'acertr', 'Atru.chr9.1436' => 'acertr', 'AUR62004211' => 'cqu', 'AUR62004548' => 'cqu', 'AUR62013637' => 'cqu', 'AUR62022662' => 'cqu', 'AUR62025777' => 'cqu', 'AUR62042386' => 'cqu', 'BcaB01g02310' => 'bca', 'BcaB01g06062' => 'bca', 'BcaB02g08975' => 'bca', 'BcaB02g08980' => 'bca', 'BcaC01g04228' => 'bca', 'BcaC01g06830' => 'bca', 'BcaC02g10186' => 'bca', 'BcaC02g12214' => 'bca', 'BcaC04g24101' => 'bca', 'BcaC05g29520' => 'bca', 'BcaC05g29661' => 'bca', 'BcaC06g32130' => 'bca', 'BcaC06g32131' => 'bca', 'BcaC07g40601' => 'bca', 'BcaC07g42641' => 'bca', 'BcaNung01038' => 'bca', 'BcaNung01676' => 'bca', 'BcaNung02480' => 'bca', 'BcaNung07376' => 'bca', 'BolC3t16146H' => 'bol', 'BolC3t16637H' => 'bol', 'BolC4t22257H' => 'bol', 'BolC4t24728H' => 'bol', 'BolC5t34517H' => 'bol', 'BolC7t45703H' => 'bol', 'BolC8t51166H' => 'bol', 'BolC9t53038H' => 'bol', 'BolC9t60000H' => 'bol', 'BraA01t01345Z' => 'bra', 'BraA01t01346Z' => 'bra', 'BraA01t01348Z' => 'bra', 'BraA03t12347Z' => 'bra', 'BraA03t12775Z' => 'bra', 'BraA03t14439Z' => 'bra', 'BraA04t15860Z' => 'bra', 'BraA05t19511Z' => 'bra', 'BraA05t22746Z' => 'bra', 'BraA09t35767Z' => 'bra', 'BraA09t40732Z' => 'bra', 'BraA10t45233Z' => 'bra', 'C03p38720' => 'bna', 'C03p43680' => 'bna', 'C04p06350' => 'bna', 'C04p31800' => 'bna', 'C05p58680' => 'bna', 'C07p52110' => 'bna', 'C08p35760' => 'bna', 'C09p01050' => 'bna', 'C09p72600' => 'bna', 'CAN.G106.2' => 'can', 'CAN.G1482.1' => 'can', 'CAN.G324.12' => 'can', 'CAN.G388.20' => 'can', 'CAN.G412.7' => 'can', 'CAN.G694.32' => 'can', 'CAN.G92.12' => 'can', 'CANSAT11G2353' => 'cansat', 'CANSAT21G1398' => 'cansat', 'CANSAT56G2456' => 'cansat', 'CANSAT56G3031' => 'cansat', 'CANSAT56G4539' => 'cansat', 'CARHR083680' => 'chi', 'CARHR171190' => 'chi', 'CARHR209010' => 'chi', 'CARHR229680' => 'chi', 'CARHR249490' => 'chi', 'Carub.0003s0844' => 'cru', 'Carub.0005s2755' => 'cru', 'Carub.0006s0322' => 'cru', 'Carub.0006s3586' => 'cru', 'Carub.0007s1855' => 'cru', 'Ca_07808_v3' => 'car', 'Ca_09535_v3' => 'car', 'Ca_10548_v3' => 'car', 'Ca_19913_v3' => 'car', 'Ca_19916_v3' => 'car', 'Ca_19975_v3' => 'car', 'CBR_g22876' => 'cbr', 'CBR_g22879' => 'cbr', 'CBR_g38491' => 'cbr', 'CBR_g54185' => 'cbr', 'CBR_g54190' => 'cbr', 'Cc02_g11020' => 'ccan', 'Cc02_g23920' => 'ccan', 'Cc02_g39860' => 'ccan', 'Cc02_g39870' => 'ccan', 'Cc03_g06760' => 'ccan', 'Cc06_g02450' => 'ccan', 'Cc09_g09450' => 'ccan', 'CDE02G1959' => 'cde', 'CDE04G0600' => 'cde', 'CDE07G1996' => 'cde', 'CDE07G2078' => 'cde', 'CDE11G0611' => 'cde', 'Cfa001683' => 'cfa', 'Cfa001734' => 'cfa', 'Cfa001737' => 'cfa', 'Cfa003751' => 'cfa', 'Cfa012019' => 'cfa', 'Cfa017353' => 'cfa', 'Cfa017732' => 'cfa', 'Cfa022464' => 'cfa', 'Ciclev10012400m.g' => 'ccl', 'Ciclev10021242m.g' => 'ccl', 'Ciclev10021302m.g' => 'ccl', 'Ciclev10021463m.g' => 'ccl', 'Ciclev10032359m.g' => 'ccl', 'CiPaw.01G081000' => 'cil', 'CiPaw.01G262500' => 'cil', 'CiPaw.01G269800' => 'cil', 'CiPaw.02G168400' => 'cil', 'CiPaw.05G119500' => 'cil', 'CiPaw.11G147300' => 'cil', 'ClCG01G003630' => 'cla', 'ClCG05G000510' => 'cla', 'ClCG05G002300' => 'cla', 'ClCG08G007650' => 'cla', 'ClCG10G021250' => 'cla', 'COL.COLO4_06218' => 'col', 'COL.COLO4_12538' => 'col', 'COL.COLO4_14775' => 'col', 'COL.COLO4_23875' => 'col', 'Cpa.g.sc141.16' => 'cpa', 'Cpa.g.sc169.16' => 'cpa', 'Cpa.g.sc244.4' => 'cpa', 'Cpa.g.sc244.5' => 'cpa', 'Cpa.g.sc29.87' => 'cpa', 'Cpa.g.sc53.115' => 'cpa', 'Cre03.g207502' => 'cre', 'Cre06.g277000' => 'cre', 'Cre09.g394050' => 'cre', 'CsaV3_3G007680' => 'csa', 'CsaV3_3G009710' => 'csa', 'CsaV3_3G034790' => 'csa', 'CsaV3_5G003750' => 'csa', 'CsaV3_6G036620' => 'csa', 'CSS0002288' => 'camsi', 'CSS0011250' => 'camsi', 'CSS0021619' => 'camsi', 'CSS0046701' => 'camsi', 'DCAR_006420' => 'dca', 'DCAR_006865' => 'dca', 'DCAR_008558' => 'dca', 'DCAR_028754' => 'dca', 'DCAR_028755' => 'dca', 'Dinv31218' => 'din', 'Dinv32371' => 'din', 'Dinv34250' => 'din', 'Dinv37156' => 'din', 'Dinv43704' => 'din', 'Duzib093G1811' => 'dzi', 'Duzib106G1622' => 'dzi', 'Duzib114G0504' => 'dzi', 'Duzib128G0338' => 'dzi', 'Duzib128G1577' => 'dzi', 'Duzib133G0104' => 'dzi', 'Duzib133G1080' => 'dzi', 'Duzib138G0324' => 'dzi', 'Duzib138G0394' => 'dzi', 'Duzib205G0122' => 'dzi', 'Duzib268G1020' => 'dzi', 'Duzib268G1359' => 'dzi', 'ECA232G3929' => 'eca', 'ECA236G2210' => 'eca', 'ECA236G2287' => 'eca', 'ECA240G4568' => 'eca', 'ECA247G0894' => 'eca', 'EL10Ac1g00200' => 'bvu', 'EL10Ac1g00886' => 'bvu', 'EL10As1g23091' => 'bvu', 'EL10As1g23092' => 'bvu', 'Eucgr.A01284' => 'egr', 'Eucgr.A01285' => 'egr', 'Eucgr.D02456' => 'egr', 'Eucgr.E00018' => 'egr', 'Eucgr.E01439' => 'egr', 'Eucgr.G02859' => 'egr', 'FAN01G0168' => 'fan', 'FAN01G0453' => 'fan', 'FAN01G2761' => 'fan', 'FAN02G1239' => 'fan', 'FAN03G0645' => 'fan', 'FAN03G2707' => 'fan', 'FAN03G2978' => 'fan', 'FAN04G0227' => 'fan', 'FAN06G0091' => 'fan', 'FAN06G1418' => 'fan', 'FAN06G1512' => 'fan', 'FAN06G1986' => 'fan', 'FAN06G2905' => 'fan', 'FAN06G4325' => 'fan', 'FAN08G0033' => 'fan', 'FAN09G0642' => 'fan', 'FAN10G1763' => 'fan', 'FAN10G2026' => 'fan', 'FAN10G2513' => 'fan', 'FAN10G3402' => 'fan', 'FAN10G3564' => 'fan', 'FAN10G3987' => 'fan', 'FAN13G1490' => 'fan', 'FAN14G5857' => 'fan', 'FAN18G1188' => 'fan', 'FvH4_5g00750' => 'fve', 'FvH4_6g13410' => 'fve', 'FvH4_7g11740' => 'fve', 'FvH4_7g17410' => 'fve', 'FvH4_7g18860' => 'fve', 'Glyma.01G099100' => 'gma', 'Glyma.01G142300' => 'gma', 'Glyma.03G025500' => 'gma', 'Glyma.03G069700' => 'gma', 'Glyma.03G260000' => 'gma', 'Glyma.09G269800' => 'gma', 'Glyma.10G208700' => 'gma', 'Glyma.18G220400' => 'gma', 'Glyma.20G182000' => 'gma', 'Gohir.A01G221726' => 'ghi', 'Gohir.A07G134600' => 'ghi', 'Gohir.A07G146000' => 'ghi', 'Gohir.A08G173900' => 'ghi', 'Gohir.A09G194900' => 'ghi', 'Gohir.A10G204100' => 'ghi', 'Gohir.A11G080600' => 'ghi', 'Gohir.A11G327500' => 'ghi', 'Gohir.A12G101800' => 'ghi', 'Gohir.D01G211200' => 'ghi', 'Gohir.D07G139200' => 'ghi', 'Gohir.D07G152100' => 'ghi', 'Gohir.D08G192600' => 'ghi', 'Gohir.D09G189200' => 'ghi', 'Gohir.D10G212000' => 'ghi', 'Gohir.D11G085200' => 'ghi', 'Gohir.D11G346400' => 'ghi', 'Gohir.D12G104800' => 'ghi', 'Gorai.001G151300' => 'gra', 'Gorai.001G174100' => 'gra', 'Gorai.002G257000' => 'gra', 'Gorai.004G202600' => 'gra', 'Gorai.007G090900' => 'gra', 'Gorai.007G376700' => 'gra', 'Gorai.008G114100' => 'gra', 'Gorai.011G237900' => 'gra', 'GSVIVG01005450001' => 'vvi', 'GSVIVG01016232001' => 'vvi', 'GSVIVG01026157001' => 'vvi', 'GSVIVG01027419001' => 'vvi', 'GSVIVG01027631001' => 'vvi', 'GSVIVG01034143001' => 'vvi', 'HanXRQChr03g0093921' => 'han', 'HanXRQChr04g0120001' => 'han', 'HanXRQChr04g0122561' => 'han', 'HanXRQChr09g0246851' => 'han', 'HanXRQChr10g0293311' => 'han', 'HanXRQChr13g0425231' => 'han', 'HanXRQChr16g0532571' => 'han', 'Haze_09050' => 'cav', 'Haze_15715' => 'cav', 'Haze_15716' => 'cav', 'Haze_16803' => 'cav', 'Haze_16850' => 'cav', 'Hma1.2p1_0301F.1_g118655' => 'hma', 'Hma1.2p1_0309F.1_g120590' => 'hma', 'Hma1.2p1_0936F.1_g238900' => 'hma', 'Hma1.2p1_3552F.1_g336740' => 'hma', 'HPP92_003520' => 'vpl', 'HPP92_006628' => 'vpl', 'HPP92_006645' => 'vpl', 'HPP92_014669' => 'vpl', 'HPP92_015077' => 'vpl', 'Hund16742' => 'sun', 'Hund17022' => 'sun', 'Lalb_Chr02g0152131' => 'lal', 'Lalb_Chr05g0225371' => 'lal', 'Lalb_Chr07g0189841' => 'lal', 'Lalb_Chr07g0192961' => 'lal', 'Lalb_Chr12g0208221' => 'lal', 'Lalb_Chr13g0291211' => 'lal', 'Lalb_Chr13g0291781' => 'lal', 'Lalb_Chr18g0044651' => 'lal', 'Lalb_Chr21g0313731' => 'lal', 'Lj1g0022533' => 'lja', 'Lj2A18T50' => 'lonja', 'Lj2A92G93' => 'lonja', 'Lj3A965T73' => 'lonja', 'Lj3g0000673' => 'lja', 'Lj3g0002666' => 'lja', 'Lj4g0016985' => 'lja', 'Lj5g0003625' => 'lja', 'Lj7A529G36' => 'lonja', 'Lj9A569T49' => 'lonja', 'Lj9A604T63' => 'lonja', 'Lsat_1_v5_gn_3_132060' => 'lsa', 'Lsat_1_v5_gn_4_68941' => 'lsa', 'Lsat_1_v5_gn_5_95580' => 'lsa', 'Lsat_1_v5_gn_7_161' => 'lsa', 'Lsat_1_v5_gn_7_7041' => 'lsa', 'Lsat_1_v5_gn_9_33481' => 'lsa', 'Lsat_1_v5_gn_9_68260' => 'lsa', 'Manes.01G073100' => 'mes', 'Manes.01G266300' => 'mes', 'Manes.02G033300' => 'mes', 'Manes.05G017900' => 'mes', 'Manes.05G046100' => 'mes', 'Manes.08G080900' => 'mes', 'Manes.10G049400' => 'mes', 'Mapoly0009s0186' => 'mpo', 'Mapoly0036s0118' => 'mpo', 'Mapoly0101s0046' => 'mpo', 'MBI04_g30218_MAGBIO' => 'mbi', 'MBI04_g35564_MAGBIO' => 'mbi', 'MBI12_g34011_MAGBIO' => 'mbi', 'MBI14_g04655_MAGBIO' => 'mbi', 'MCO07G653' => 'mco', 'MCO10G173' => 'mco', 'MD01G1087100' => 'mdo', 'MD01G1104200' => 'mdo', 'MD02G1205100' => 'mdo', 'MD04G1079200' => 'mdo', 'MD04G1131400' => 'mdo', 'MD07G1121600' => 'mdo', 'MD07G1157300' => 'mdo', 'MD07G1171000' => 'mdo', 'MD12G1144500' => 'mdo', 'Medtr1g094610' => 'mtr', 'Medtr4g021795' => 'mtr', 'Medtr4g023760' => 'mtr', 'Medtr7g118050' => 'mtr', 'MELO3C005582.2' => 'cme', 'MELO3C005989.2' => 'cme', 'MELO3C006192.2' => 'cme', 'MELO3C009248.2' => 'cme', 'MELO3C019817.2' => 'cme', 'Migut.B01625' => 'egut', 'Migut.B01915' => 'egut', 'Migut.F01721' => 'egut', 'Migut.J00314' => 'egut', 'MSTRG.20742' => 'ama', 'MSTRG.8134' => 'ama', 'Nitab4.5_0000096g0010' => 'nta', 'Nitab4.5_0000202g0030' => 'nta', 'Nitab4.5_0000216g0370' => 'nta', 'Nitab4.5_0000457g0230' => 'nta', 'Nitab4.5_0001702g0170' => 'nta', 'Nitab4.5_0003607g0010' => 'nta', 'Nitab4.5_0004917g0020' => 'nta', 'Nitab4.5_0007059g0010' => 'nta', 'Nitab4.5_0007184g0010' => 'nta', 'Nitab4.5_0007346g0020' => 'nta', 'Nn1g00410' => 'nnu', 'Nn1g01252' => 'nnu', 'Nn2g11168' => 'nnu', 'Nn2g13403' => 'nnu', 'Nn2g13760' => 'nnu', 'Nn4g26380' => 'nnu', 'Oeu000806.2' => 'oeu', 'Oeu005788.1' => 'oeu', 'Oeu006900.3' => 'oeu', 'Oeu007797.1' => 'oeu', 'Oeu011932.1' => 'oeu', 'Oeu022739.1' => 'oeu', 'Oeu037918.1' => 'oeu', 'Oeu055490.2' => 'oeu', 'Os01g0844400' => 'osa', 'Os02g0819100' => 'osa', 'Os03g0804300' => 'osa', 'Os05g0458000' => 'osa', 'Os07g0467800' => 'osa', 'Os12g0602200' => 'osa', 'Peaxi162Scf00013g03444' => 'pax', 'Peaxi162Scf00094g01120' => 'pax', 'Peaxi162Scf00191g01211' => 'pax', 'Peaxi162Scf00238g01110' => 'pax', 'Peaxi162Scf00330g00719' => 'pax', 'Peaxi162Scf00627g00018' => 'pax', 'PGR031G2686' => 'pgr', 'PGR042G0809' => 'pgr', 'PGR142G0193' => 'pgr', 'PGSC0003DMG400011066' => 'stu', 'PGSC0003DMG400012041' => 'stu', 'PGSC0003DMG400013678' => 'stu', 'PGSC0003DMG400023477' => 'stu', 'PGSC0003DMG400025956' => 'stu', 'PGSC0003DMG401019151' => 'stu', 'Phvul.006G116400' => 'pvu', 'Phvul.007G097300' => 'pvu', 'Phvul.010G015000' => 'pvu', 'Phvul.010G083900' => 'pvu', 'Potri.001G117100' => 'ptr', 'Potri.002G147300' => 'ptr', 'Potri.003G115600' => 'ptr', 'Potri.006G087400' => 'ptr', 'Potri.010G226100' => 'ptr', 'Potri.014G069200' => 'ptr', 'Potri.014G104000' => 'ptr', 'Potri.016G100200' => 'ptr', 'Pp3c10_20450' => 'ppa', 'Pp3c1_42400' => 'ppa', 'Pp3c3_24390' => 'ppa', 'Pp3c3_2860' => 'ppa', 'PRCOL_00003193' => 'pco', 'Prupe.2G144500' => 'ppe', 'Prupe.2G195700' => 'ppe', 'Prupe.2G209800' => 'ppe', 'Prupe.5G080000' => 'ppe', 'Prupe.6G257900' => 'ppe', 'Psat3g001160' => 'psa', 'Psat6g181880' => 'psa', 'Psat7g233720' => 'psa', 'PSO063G7587' => 'pso', 'PSO339G2145' => 'pso', 'PSO339G3369' => 'pso', 'PSO478G2747' => 'pso', 'PSO513G0140' => 'pso', 'PSO782G1614' => 'pso', 'PSO782G4889' => 'pso', 'PSO782G5485' => 'pso', 'PSO801G0241' => 'pso', 'QL07p048854' => 'qlo', 'QL08p046745' => 'qlo', 'QL08p052606' => 'qlo', 'QL08p053414' => 'qlo', 'QL08p054868' => 'qlo', 'RcHm_v2.0_Chr1g0350251' => 'rch', 'RcHm_v2.0_Chr1g0360851' => 'rch', 'RcHm_v2.0_Chr1g0362791' => 'rch', 'RcHm_v2.0_Chr3g0466281' => 'rch', 'RcHm_v2.0_Chr7g0201481' => 'rch', 'Rhsim01G0148600' => 'rsi', 'Rhsim05G0194400' => 'rsi', 'Rhsim07G0000700' => 'rsi', 'Rhsim07G0000800' => 'rsi', 'Rhsim07G0027900' => 'rsi', 'Rhsim09G0149500' => 'rsi', 'RhsimUnG0186900' => 'rsi', 'Sabra01G0089900' => 'sbr', 'Sabra02G0114700' => 'sbr', 'Sabra02G0116300' => 'sbr', 'Sabra03G0080100' => 'sbr', 'Sabra08G0024300' => 'sbr', 'Sabra10G0174300' => 'sbr', 'Sabra14G0048900' => 'sbr', 'Sabra14G0076500' => 'sbr', 'SalBow5G2513' => 'sbo', 'Sc01g0002300' => 'sci', 'Sc01g0004450' => 'sci', 'Sc06g0001680' => 'sci', 'Sc23g0003580' => 'sci', 'Sed0000913' => 'sed', 'Sed0001655' => 'sed', 'Sed0007745' => 'sed', 'Sed0010951' => 'sed', 'Sed0017599' => 'sed', 'Sed0021405' => 'sed', 'Sed0022810' => 'sed', 'SEGI_07099' => 'sgi', 'SEGI_11931' => 'sgi', 'SEGI_13187' => 'sgi', 'SEGI_29958' => 'sgi', 'SEGI_36351' => 'sgi', 'SGA_v2.0_scaffold126G33770' => 'sas', 'SGA_v2.0_scaffold153G37003' => 'sas', 'SGA_v2.0_scaffold2G01359' => 'sas', 'SGA_v2.0_scaffold5G03064' => 'sas', 'SGA_v2.0_scaffold95G28903' => 'sas', 'SHI12701' => 'shi', 'SHI26410' => 'shi', 'SHI38997' => 'shi', 'SHI53759' => 'shi', 'SHI53886' => 'shi', 'SHI54714' => 'shi', 'SMO011G0041' => 'smo', 'SMO146G0251' => 'smo', 'SMO160G0004' => 'smo', 'SMO174G0057' => 'smo', 'SMO244G0089' => 'smo', 'SMO296G0011' => 'smo', 'Solyc01g091280.3' => 'sly', 'Solyc05g047610.3' => 'sly', 'Solyc05g047640.3' => 'sly', 'Solyc05g055630.3' => 'sly', 'Solyc10g018160.2' => 'sly', 'Solyc10g084820.2' => 'sly', 'Solyc10g086565.2' => 'sly', 'Sopen01g037030' => 'spe', 'Sopen05g027920' => 'spe', 'Sopen05g034070' => 'spe', 'Sopen10g007260' => 'spe', 'Sopen10g034260' => 'spe', 'Sopen10g035950' => 'spe', 'Sp3g07710' => 'spa', 'Sp4g27420' => 'spa', 'Sp5g02450' => 'spa', 'Sp6g01280' => 'spa', 'Sp6g38480' => 'spa', 'Sp7g20780' => 'spa', 'TAR374G1413' => 'tar', 'TAR623G1777' => 'tar', 'TAR629G2370' => 'tar', 'TAR633G1759' => 'tar', 'TAR636G3387' => 'tar', 'THA.LOC104802447' => 'tha', 'THA.LOC104813916' => 'tha', 'THA.LOC104816423' => 'tha', 'THA.LOC104817246' => 'tha', 'THA.LOC104825895' => 'tha', 'Thecc.01G335200' => 'tca', 'Thecc.01G377400' => 'tca', 'Thecc.03G262200' => 'tca', 'Thecc.05G036800' => 'tca', 'Thecc.10G080500' => 'tca', 'Thecc.10G080800' => 'tca', 'Thhalv10001560m.g' => 'esa', 'Thhalv10006120m.g' => 'esa', 'Thhalv10014375m.g' => 'esa', 'Thhalv10021264m.g' => 'esa', 'Thhalv10028856m.g' => 'esa', 'TPR.G1914' => 'tpr', 'TPR.G4757' => 'tpr', 'TPR.G5595' => 'tpr', 'TWI14G0952' => 'twi', 'TWI14G1307' => 'twi', 'TWI38G2143' => 'twi', 'TWI59G0826' => 'twi', 'TWI77G0527' => 'twi', 'TWI81G0150' => 'twi', 'unitig_21.g21018' => 'ugi', 'unitig_26.g9725' => 'ugi', 'unitig_744.g24653' => 'ugi', 'unitig_749.g13778' => 'ugi', 'unitig_899.g15035' => 'ugi', 'vmacro04296' => 'vma', 'vmacro04852' => 'vma', 'vmacro13404' => 'vma', 'vmacro20169' => 'vma', 'vmacro21014' => 'vma', 'VMungo0331G0237' => 'vmu', 'VMungo0331G0706' => 'vmu', 'VMungo0331G1361' => 'vmu', 'VMungo0331G1489' => 'vmu', 'VMungo0540G1037' => 'vmu', 'VMungo0720G2487' => 'vmu', 'VMungo0720G2721' => 'vmu', 'Zm00001eb086860' => 'zma', 'Zm00001eb104760' => 'zma', 'Zm00001eb148220' => 'zma', 'Zm00001eb259030' => 'zma', 'Zm00001eb289590' => 'zma', 'Zm00001eb420150' => 'zma' ), 'gf_id' => 'HOM05D000968', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000968' ), 'data_identifier' => 'HOM05D000968', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000968', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p31690' => 'bna', 'A03p36040' => 'bna', 'A03p53730' => 'bna', 'A04p01410' => 'bna', 'A05p05420' => 'bna', 'A05p39630' => 'bna', 'A05p39640' => 'bna', 'A09p00970' => 'bna', 'A09p53060' => 'bna', 'A10p31890' => 'bna', 'Aa31LG10G15040' => 'aar', 'Aa31LG1G21090' => 'aar', 'Aa31LG1G26900' => 'aar', 'Aa31LG3G1820' => 'aar', 'Aa31LG5G1100' => 'aar', 'Aa31LG6G4740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2265' => 'aag', 'Actinidia07998' => 'ach', 'Actinidia11266' => 'ach', 'Actinidia12682' => 'ach', 'Actinidia26479' => 'ach', 'Actinidia31406' => 'ach', 'Actinidia32437' => 'ach', 'Actinidia38862' => 'ach', 'Ah.05g174230' => 'amhyb', 'Ah.05g179070' => 'amhyb', 'Ah.05g179090' => 'amhyb', 'Ah.12g059950' => 'amhyb', 'AL3G20480' => 'aly', 'AL4G44520' => 'aly', 'AL5G43110' => 'aly', 'AL6G13890' => 'aly', 'AL6G52620' => 'aly', 'AL7G30830' => 'aly', 'Aqoxy1G00899' => 'aox', 'Aqoxy5G04333' => 'aox', 'Aqoxy7G00641' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3IZ0NN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4EF6AW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W9P8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79GA3M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C43NQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFCU6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G95YVJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCHK29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LU1UG8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX91RN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGB4B1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8DA0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9H7JI' => 'arhy', 'AT3G09320' => 'ath', 'AT3G60800' => 'ath', 'AT4G00840' => 'ath', 'AT4G22750' => 'ath', 'AT5G04270' => 'ath', 'ATR0090G003' => 'atr', 'ATR0559G349' => 'atr', 'ATR0680G261' => 'atr', 'ATR0810G048' => 'atr', 'Atru.chr12.831' => 'acertr', 'Atru.chr5.303' => 'acertr', 'Atru.chr5.748' => 'acertr', 'Atru.chr8.1999' => 'acertr', 'Atru.chr9.1436' => 'acertr', 'AUR62004211' => 'cqu', 'AUR62004548' => 'cqu', 'AUR62013637' => 'cqu', 'AUR62022662' => 'cqu', 'AUR62025777' => 'cqu', 'AUR62042386' => 'cqu', 'BcaB01g02310' => 'bca', 'BcaB01g06062' => 'bca', 'BcaB02g08975' => 'bca', 'BcaB02g08980' => 'bca', 'BcaC01g04228' => 'bca', 'BcaC01g06830' => 'bca', 'BcaC02g10186' => 'bca', 'BcaC02g12214' => 'bca', 'BcaC04g24101' => 'bca', 'BcaC05g29520' => 'bca', 'BcaC05g29661' => 'bca', 'BcaC06g32130' => 'bca', 'BcaC06g32131' => 'bca', 'BcaC07g40601' => 'bca', 'BcaC07g42641' => 'bca', 'BcaNung01038' => 'bca', 'BcaNung01676' => 'bca', 'BcaNung02480' => 'bca', 'BcaNung07376' => 'bca', 'BolC3t16146H' => 'bol', 'BolC3t16637H' => 'bol', 'BolC4t22257H' => 'bol', 'BolC4t24728H' => 'bol', 'BolC5t34517H' => 'bol', 'BolC7t45703H' => 'bol', 'BolC8t51166H' => 'bol', 'BolC9t53038H' => 'bol', 'BolC9t60000H' => 'bol', 'BraA01t01345Z' => 'bra', 'BraA01t01346Z' => 'bra', 'BraA01t01348Z' => 'bra', 'BraA03t12347Z' => 'bra', 'BraA03t12775Z' => 'bra', 'BraA03t14439Z' => 'bra', 'BraA04t15860Z' => 'bra', 'BraA05t19511Z' => 'bra', 'BraA05t22746Z' => 'bra', 'BraA09t35767Z' => 'bra', 'BraA09t40732Z' => 'bra', 'BraA10t45233Z' => 'bra', 'C03p38720' => 'bna', 'C03p43680' => 'bna', 'C04p06350' => 'bna', 'C04p31800' => 'bna', 'C05p58680' => 'bna', 'C07p52110' => 'bna', 'C08p35760' => 'bna', 'C09p01050' => 'bna', 'C09p72600' => 'bna', 'CAN.G106.2' => 'can', 'CAN.G1482.1' => 'can', 'CAN.G324.12' => 'can', 'CAN.G388.20' => 'can', 'CAN.G412.7' => 'can', 'CAN.G694.32' => 'can', 'CAN.G92.12' => 'can', 'CANSAT11G2353' => 'cansat', 'CANSAT21G1398' => 'cansat', 'CANSAT56G2456' => 'cansat', 'CANSAT56G3031' => 'cansat', 'CANSAT56G4539' => 'cansat', 'CARHR083680' => 'chi', 'CARHR171190' => 'chi', 'CARHR209010' => 'chi', 'CARHR229680' => 'chi', 'CARHR249490' => 'chi', 'Carub.0003s0844' => 'cru', 'Carub.0005s2755' => 'cru', 'Carub.0006s0322' => 'cru', 'Carub.0006s3586' => 'cru', 'Carub.0007s1855' => 'cru', 'Ca_07808_v3' => 'car', 'Ca_09535_v3' => 'car', 'Ca_10548_v3' => 'car', 'Ca_19913_v3' => 'car', 'Ca_19916_v3' => 'car', 'Ca_19975_v3' => 'car', 'CBR_g22876' => 'cbr', 'CBR_g22879' => 'cbr', 'CBR_g38491' => 'cbr', 'CBR_g54185' => 'cbr', 'CBR_g54190' => 'cbr', 'Cc02_g11020' => 'ccan', 'Cc02_g23920' => 'ccan', 'Cc02_g39860' => 'ccan', 'Cc02_g39870' => 'ccan', 'Cc03_g06760' => 'ccan', 'Cc06_g02450' => 'ccan', 'Cc09_g09450' => 'ccan', 'CDE02G1959' => 'cde', 'CDE04G0600' => 'cde', 'CDE07G1996' => 'cde', 'CDE07G2078' => 'cde', 'CDE11G0611' => 'cde', 'Cfa001683' => 'cfa', 'Cfa001734' => 'cfa', 'Cfa001737' => 'cfa', 'Cfa003751' => 'cfa', 'Cfa012019' => 'cfa', 'Cfa017353' => 'cfa', 'Cfa017732' => 'cfa', 'Cfa022464' => 'cfa', 'Ciclev10012400m.g' => 'ccl', 'Ciclev10021242m.g' => 'ccl', 'Ciclev10021302m.g' => 'ccl', 'Ciclev10021463m.g' => 'ccl', 'Ciclev10032359m.g' => 'ccl', 'CiPaw.01G081000' => 'cil', 'CiPaw.01G262500' => 'cil', 'CiPaw.01G269800' => 'cil', 'CiPaw.02G168400' => 'cil', 'CiPaw.05G119500' => 'cil', 'CiPaw.11G147300' => 'cil', 'ClCG01G003630' => 'cla', 'ClCG05G000510' => 'cla', 'ClCG05G002300' => 'cla', 'ClCG08G007650' => 'cla', 'ClCG10G021250' => 'cla', 'COL.COLO4_06218' => 'col', 'COL.COLO4_12538' => 'col', 'COL.COLO4_14775' => 'col', 'COL.COLO4_23875' => 'col', 'Cpa.g.sc141.16' => 'cpa', 'Cpa.g.sc169.16' => 'cpa', 'Cpa.g.sc244.4' => 'cpa', 'Cpa.g.sc244.5' => 'cpa', 'Cpa.g.sc29.87' => 'cpa', 'Cpa.g.sc53.115' => 'cpa', 'Cre03.g207502' => 'cre', 'Cre06.g277000' => 'cre', 'Cre09.g394050' => 'cre', 'CsaV3_3G007680' => 'csa', 'CsaV3_3G009710' => 'csa', 'CsaV3_3G034790' => 'csa', 'CsaV3_5G003750' => 'csa', 'CsaV3_6G036620' => 'csa', 'CSS0002288' => 'camsi', 'CSS0011250' => 'camsi', 'CSS0021619' => 'camsi', 'CSS0046701' => 'camsi', 'DCAR_006420' => 'dca', 'DCAR_006865' => 'dca', 'DCAR_008558' => 'dca', 'DCAR_028754' => 'dca', 'DCAR_028755' => 'dca', 'Dinv31218' => 'din', 'Dinv32371' => 'din', 'Dinv34250' => 'din', 'Dinv37156' => 'din', 'Dinv43704' => 'din', 'Duzib093G1811' => 'dzi', 'Duzib106G1622' => 'dzi', 'Duzib114G0504' => 'dzi', 'Duzib128G0338' => 'dzi', 'Duzib128G1577' => 'dzi', 'Duzib133G0104' => 'dzi', 'Duzib133G1080' => 'dzi', 'Duzib138G0324' => 'dzi', 'Duzib138G0394' => 'dzi', 'Duzib205G0122' => 'dzi', 'Duzib268G1020' => 'dzi', 'Duzib268G1359' => 'dzi', 'ECA232G3929' => 'eca', 'ECA236G2210' => 'eca', 'ECA236G2287' => 'eca', 'ECA240G4568' => 'eca', 'ECA247G0894' => 'eca', 'EL10Ac1g00200' => 'bvu', 'EL10Ac1g00886' => 'bvu', 'EL10As1g23091' => 'bvu', 'EL10As1g23092' => 'bvu', 'Eucgr.A01284' => 'egr', 'Eucgr.A01285' => 'egr', 'Eucgr.D02456' => 'egr', 'Eucgr.E00018' => 'egr', 'Eucgr.E01439' => 'egr', 'Eucgr.G02859' => 'egr', 'FAN01G0168' => 'fan', 'FAN01G0453' => 'fan', 'FAN01G2761' => 'fan', 'FAN02G1239' => 'fan', 'FAN03G0645' => 'fan', 'FAN03G2707' => 'fan', 'FAN03G2978' => 'fan', 'FAN04G0227' => 'fan', 'FAN06G0091' => 'fan', 'FAN06G1418' => 'fan', 'FAN06G1512' => 'fan', 'FAN06G1986' => 'fan', 'FAN06G2905' => 'fan', 'FAN06G4325' => 'fan', 'FAN08G0033' => 'fan', 'FAN09G0642' => 'fan', 'FAN10G1763' => 'fan', 'FAN10G2026' => 'fan', 'FAN10G2513' => 'fan', 'FAN10G3402' => 'fan', 'FAN10G3564' => 'fan', 'FAN10G3987' => 'fan', 'FAN13G1490' => 'fan', 'FAN14G5857' => 'fan', 'FAN18G1188' => 'fan', 'FvH4_5g00750' => 'fve', 'FvH4_6g13410' => 'fve', 'FvH4_7g11740' => 'fve', 'FvH4_7g17410' => 'fve', 'FvH4_7g18860' => 'fve', 'Glyma.01G099100' => 'gma', 'Glyma.01G142300' => 'gma', 'Glyma.03G025500' => 'gma', 'Glyma.03G069700' => 'gma', 'Glyma.03G260000' => 'gma', 'Glyma.09G269800' => 'gma', 'Glyma.10G208700' => 'gma', 'Glyma.18G220400' => 'gma', 'Glyma.20G182000' => 'gma', 'Gohir.A01G221726' => 'ghi', 'Gohir.A07G134600' => 'ghi', 'Gohir.A07G146000' => 'ghi', 'Gohir.A08G173900' => 'ghi', 'Gohir.A09G194900' => 'ghi', 'Gohir.A10G204100' => 'ghi', 'Gohir.A11G080600' => 'ghi', 'Gohir.A11G327500' => 'ghi', 'Gohir.A12G101800' => 'ghi', 'Gohir.D01G211200' => 'ghi', 'Gohir.D07G139200' => 'ghi', 'Gohir.D07G152100' => 'ghi', 'Gohir.D08G192600' => 'ghi', 'Gohir.D09G189200' => 'ghi', 'Gohir.D10G212000' => 'ghi', 'Gohir.D11G085200' => 'ghi', 'Gohir.D11G346400' => 'ghi', 'Gohir.D12G104800' => 'ghi', 'Gorai.001G151300' => 'gra', 'Gorai.001G174100' => 'gra', 'Gorai.002G257000' => 'gra', 'Gorai.004G202600' => 'gra', 'Gorai.007G090900' => 'gra', 'Gorai.007G376700' => 'gra', 'Gorai.008G114100' => 'gra', 'Gorai.011G237900' => 'gra', 'GSVIVG01005450001' => 'vvi', 'GSVIVG01016232001' => 'vvi', 'GSVIVG01026157001' => 'vvi', 'GSVIVG01027419001' => 'vvi', 'GSVIVG01027631001' => 'vvi', 'GSVIVG01034143001' => 'vvi', 'HanXRQChr03g0093921' => 'han', 'HanXRQChr04g0120001' => 'han', 'HanXRQChr04g0122561' => 'han', 'HanXRQChr09g0246851' => 'han', 'HanXRQChr10g0293311' => 'han', 'HanXRQChr13g0425231' => 'han', 'HanXRQChr16g0532571' => 'han', 'Haze_09050' => 'cav', 'Haze_15715' => 'cav', 'Haze_15716' => 'cav', 'Haze_16803' => 'cav', 'Haze_16850' => 'cav', 'Hma1.2p1_0301F.1_g118655' => 'hma', 'Hma1.2p1_0309F.1_g120590' => 'hma', 'Hma1.2p1_0936F.1_g238900' => 'hma', 'Hma1.2p1_3552F.1_g336740' => 'hma', 'HPP92_003520' => 'vpl', 'HPP92_006628' => 'vpl', 'HPP92_006645' => 'vpl', 'HPP92_014669' => 'vpl', 'HPP92_015077' => 'vpl', 'Hund16742' => 'sun', 'Hund17022' => 'sun', 'Lalb_Chr02g0152131' => 'lal', 'Lalb_Chr05g0225371' => 'lal', 'Lalb_Chr07g0189841' => 'lal', 'Lalb_Chr07g0192961' => 'lal', 'Lalb_Chr12g0208221' => 'lal', 'Lalb_Chr13g0291211' => 'lal', 'Lalb_Chr13g0291781' => 'lal', 'Lalb_Chr18g0044651' => 'lal', 'Lalb_Chr21g0313731' => 'lal', 'Lj1g0022533' => 'lja', 'Lj2A18T50' => 'lonja', 'Lj2A92G93' => 'lonja', 'Lj3A965T73' => 'lonja', 'Lj3g0000673' => 'lja', 'Lj3g0002666' => 'lja', 'Lj4g0016985' => 'lja', 'Lj5g0003625' => 'lja', 'Lj7A529G36' => 'lonja', 'Lj9A569T49' => 'lonja', 'Lj9A604T63' => 'lonja', 'Lsat_1_v5_gn_3_132060' => 'lsa', 'Lsat_1_v5_gn_4_68941' => 'lsa', 'Lsat_1_v5_gn_5_95580' => 'lsa', 'Lsat_1_v5_gn_7_161' => 'lsa', 'Lsat_1_v5_gn_7_7041' => 'lsa', 'Lsat_1_v5_gn_9_33481' => 'lsa', 'Lsat_1_v5_gn_9_68260' => 'lsa', 'Manes.01G073100' => 'mes', 'Manes.01G266300' => 'mes', 'Manes.02G033300' => 'mes', 'Manes.05G017900' => 'mes', 'Manes.05G046100' => 'mes', 'Manes.08G080900' => 'mes', 'Manes.10G049400' => 'mes', 'Mapoly0009s0186' => 'mpo', 'Mapoly0036s0118' => 'mpo', 'Mapoly0101s0046' => 'mpo', 'MBI04_g30218_MAGBIO' => 'mbi', 'MBI04_g35564_MAGBIO' => 'mbi', 'MBI12_g34011_MAGBIO' => 'mbi', 'MBI14_g04655_MAGBIO' => 'mbi', 'MCO07G653' => 'mco', 'MCO10G173' => 'mco', 'MD01G1087100' => 'mdo', 'MD01G1104200' => 'mdo', 'MD02G1205100' => 'mdo', 'MD04G1079200' => 'mdo', 'MD04G1131400' => 'mdo', 'MD07G1121600' => 'mdo', 'MD07G1157300' => 'mdo', 'MD07G1171000' => 'mdo', 'MD12G1144500' => 'mdo', 'Medtr1g094610' => 'mtr', 'Medtr4g021795' => 'mtr', 'Medtr4g023760' => 'mtr', 'Medtr7g118050' => 'mtr', 'MELO3C005582.2' => 'cme', 'MELO3C005989.2' => 'cme', 'MELO3C006192.2' => 'cme', 'MELO3C009248.2' => 'cme', 'MELO3C019817.2' => 'cme', 'Migut.B01625' => 'egut', 'Migut.B01915' => 'egut', 'Migut.F01721' => 'egut', 'Migut.J00314' => 'egut', 'MSTRG.20742' => 'ama', 'MSTRG.8134' => 'ama', 'Nitab4.5_0000096g0010' => 'nta', 'Nitab4.5_0000202g0030' => 'nta', 'Nitab4.5_0000216g0370' => 'nta', 'Nitab4.5_0000457g0230' => 'nta', 'Nitab4.5_0001702g0170' => 'nta', 'Nitab4.5_0003607g0010' => 'nta', 'Nitab4.5_0004917g0020' => 'nta', 'Nitab4.5_0007059g0010' => 'nta', 'Nitab4.5_0007184g0010' => 'nta', 'Nitab4.5_0007346g0020' => 'nta', 'Nn1g00410' => 'nnu', 'Nn1g01252' => 'nnu', 'Nn2g11168' => 'nnu', 'Nn2g13403' => 'nnu', 'Nn2g13760' => 'nnu', 'Nn4g26380' => 'nnu', 'Oeu000806.2' => 'oeu', 'Oeu005788.1' => 'oeu', 'Oeu006900.3' => 'oeu', 'Oeu007797.1' => 'oeu', 'Oeu011932.1' => 'oeu', 'Oeu022739.1' => 'oeu', 'Oeu037918.1' => 'oeu', 'Oeu055490.2' => 'oeu', 'Os01g0844400' => 'osa', 'Os02g0819100' => 'osa', 'Os03g0804300' => 'osa', 'Os05g0458000' => 'osa', 'Os07g0467800' => 'osa', 'Os12g0602200' => 'osa', 'Peaxi162Scf00013g03444' => 'pax', 'Peaxi162Scf00094g01120' => 'pax', 'Peaxi162Scf00191g01211' => 'pax', 'Peaxi162Scf00238g01110' => 'pax', 'Peaxi162Scf00330g00719' => 'pax', 'Peaxi162Scf00627g00018' => 'pax', 'PGR031G2686' => 'pgr', 'PGR042G0809' => 'pgr', 'PGR142G0193' => 'pgr', 'PGSC0003DMG400011066' => 'stu', 'PGSC0003DMG400012041' => 'stu', 'PGSC0003DMG400013678' => 'stu', 'PGSC0003DMG400023477' => 'stu', 'PGSC0003DMG400025956' => 'stu', 'PGSC0003DMG401019151' => 'stu', 'Phvul.006G116400' => 'pvu', 'Phvul.007G097300' => 'pvu', 'Phvul.010G015000' => 'pvu', 'Phvul.010G083900' => 'pvu', 'Potri.001G117100' => 'ptr', 'Potri.002G147300' => 'ptr', 'Potri.003G115600' => 'ptr', 'Potri.006G087400' => 'ptr', 'Potri.010G226100' => 'ptr', 'Potri.014G069200' => 'ptr', 'Potri.014G104000' => 'ptr', 'Potri.016G100200' => 'ptr', 'Pp3c10_20450' => 'ppa', 'Pp3c1_42400' => 'ppa', 'Pp3c3_24390' => 'ppa', 'Pp3c3_2860' => 'ppa', 'PRCOL_00003193' => 'pco', 'Prupe.2G144500' => 'ppe', 'Prupe.2G195700' => 'ppe', 'Prupe.2G209800' => 'ppe', 'Prupe.5G080000' => 'ppe', 'Prupe.6G257900' => 'ppe', 'Psat3g001160' => 'psa', 'Psat6g181880' => 'psa', 'Psat7g233720' => 'psa', 'PSO063G7587' => 'pso', 'PSO339G2145' => 'pso', 'PSO339G3369' => 'pso', 'PSO478G2747' => 'pso', 'PSO513G0140' => 'pso', 'PSO782G1614' => 'pso', 'PSO782G4889' => 'pso', 'PSO782G5485' => 'pso', 'PSO801G0241' => 'pso', 'QL07p048854' => 'qlo', 'QL08p046745' => 'qlo', 'QL08p052606' => 'qlo', 'QL08p053414' => 'qlo', 'QL08p054868' => 'qlo', 'RcHm_v2.0_Chr1g0350251' => 'rch', 'RcHm_v2.0_Chr1g0360851' => 'rch', 'RcHm_v2.0_Chr1g0362791' => 'rch', 'RcHm_v2.0_Chr3g0466281' => 'rch', 'RcHm_v2.0_Chr7g0201481' => 'rch', 'Rhsim01G0148600' => 'rsi', 'Rhsim05G0194400' => 'rsi', 'Rhsim07G0000700' => 'rsi', 'Rhsim07G0000800' => 'rsi', 'Rhsim07G0027900' => 'rsi', 'Rhsim09G0149500' => 'rsi', 'RhsimUnG0186900' => 'rsi', 'Sabra01G0089900' => 'sbr', 'Sabra02G0114700' => 'sbr', 'Sabra02G0116300' => 'sbr', 'Sabra03G0080100' => 'sbr', 'Sabra08G0024300' => 'sbr', 'Sabra10G0174300' => 'sbr', 'Sabra14G0048900' => 'sbr', 'Sabra14G0076500' => 'sbr', 'SalBow5G2513' => 'sbo', 'Sc01g0002300' => 'sci', 'Sc01g0004450' => 'sci', 'Sc06g0001680' => 'sci', 'Sc23g0003580' => 'sci', 'Sed0000913' => 'sed', 'Sed0001655' => 'sed', 'Sed0007745' => 'sed', 'Sed0010951' => 'sed', 'Sed0017599' => 'sed', 'Sed0021405' => 'sed', 'Sed0022810' => 'sed', 'SEGI_07099' => 'sgi', 'SEGI_11931' => 'sgi', 'SEGI_13187' => 'sgi', 'SEGI_29958' => 'sgi', 'SEGI_36351' => 'sgi', 'SGA_v2.0_scaffold126G33770' => 'sas', 'SGA_v2.0_scaffold153G37003' => 'sas', 'SGA_v2.0_scaffold2G01359' => 'sas', 'SGA_v2.0_scaffold5G03064' => 'sas', 'SGA_v2.0_scaffold95G28903' => 'sas', 'SHI12701' => 'shi', 'SHI26410' => 'shi', 'SHI38997' => 'shi', 'SHI53759' => 'shi', 'SHI53886' => 'shi', 'SHI54714' => 'shi', 'SMO011G0041' => 'smo', 'SMO146G0251' => 'smo', 'SMO160G0004' => 'smo', 'SMO174G0057' => 'smo', 'SMO244G0089' => 'smo', 'SMO296G0011' => 'smo', 'Solyc01g091280.3' => 'sly', 'Solyc05g047610.3' => 'sly', 'Solyc05g047640.3' => 'sly', 'Solyc05g055630.3' => 'sly', 'Solyc10g018160.2' => 'sly', 'Solyc10g084820.2' => 'sly', 'Solyc10g086565.2' => 'sly', 'Sopen01g037030' => 'spe', 'Sopen05g027920' => 'spe', 'Sopen05g034070' => 'spe', 'Sopen10g007260' => 'spe', 'Sopen10g034260' => 'spe', 'Sopen10g035950' => 'spe', 'Sp3g07710' => 'spa', 'Sp4g27420' => 'spa', 'Sp5g02450' => 'spa', 'Sp6g01280' => 'spa', 'Sp6g38480' => 'spa', 'Sp7g20780' => 'spa', 'TAR374G1413' => 'tar', 'TAR623G1777' => 'tar', 'TAR629G2370' => 'tar', 'TAR633G1759' => 'tar', 'TAR636G3387' => 'tar', 'THA.LOC104802447' => 'tha', 'THA.LOC104813916' => 'tha', 'THA.LOC104816423' => 'tha', 'THA.LOC104817246' => 'tha', 'THA.LOC104825895' => 'tha', 'Thecc.01G335200' => 'tca', 'Thecc.01G377400' => 'tca', 'Thecc.03G262200' => 'tca', 'Thecc.05G036800' => 'tca', 'Thecc.10G080500' => 'tca', 'Thecc.10G080800' => 'tca', 'Thhalv10001560m.g' => 'esa', 'Thhalv10006120m.g' => 'esa', 'Thhalv10014375m.g' => 'esa', 'Thhalv10021264m.g' => 'esa', 'Thhalv10028856m.g' => 'esa', 'TPR.G1914' => 'tpr', 'TPR.G4757' => 'tpr', 'TPR.G5595' => 'tpr', 'TWI14G0952' => 'twi', 'TWI14G1307' => 'twi', 'TWI38G2143' => 'twi', 'TWI59G0826' => 'twi', 'TWI77G0527' => 'twi', 'TWI81G0150' => 'twi', 'unitig_21.g21018' => 'ugi', 'unitig_26.g9725' => 'ugi', 'unitig_744.g24653' => 'ugi', 'unitig_749.g13778' => 'ugi', 'unitig_899.g15035' => 'ugi', 'vmacro04296' => 'vma', 'vmacro04852' => 'vma', 'vmacro13404' => 'vma', 'vmacro20169' => 'vma', 'vmacro21014' => 'vma', 'VMungo0331G0237' => 'vmu', 'VMungo0331G0706' => 'vmu', 'VMungo0331G1361' => 'vmu', 'VMungo0331G1489' => 'vmu', 'VMungo0540G1037' => 'vmu', 'VMungo0720G2487' => 'vmu', 'VMungo0720G2721' => 'vmu', 'Zm00001eb086860' => 'zma', 'Zm00001eb104760' => 'zma', 'Zm00001eb148220' => 'zma', 'Zm00001eb259030' => 'zma', 'Zm00001eb289590' => 'zma', 'Zm00001eb420150' => 'zma' ) $gf_id = 'HOM05D000968' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000968' ) $data_identifier = 'HOM05D000968' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 19, 'bol' => (int) 9, 'bra' => (int) 12, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 5, 'ccan' => (int) 7, 'cde' => (int) 5, 'cfa' => (int) 8, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 4, 'dca' => (int) 5, 'din' => (int) 5, 'dzi' => (int) 12, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 25, 'fve' => (int) 5, 'gma' => (int) 9, 'ghi' => (int) 18, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 7, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 5, 'sun' => (int) 2, 'lal' => (int) 9, 'lja' => (int) 5, 'lonja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 9, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 2, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 3, 'stu' => (int) 6, 'pvu' => (int) 4, 'ptr' => (int) 8, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 3, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 1, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 5, 'sas' => (int) 5, 'shi' => (int) 6, 'smo' => (int) 6, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 3, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420150' $species_info = array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ) $local_species = 'tpr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000968', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p31690' => 'bna', 'A03p36040' => 'bna', 'A03p53730' => 'bna', 'A04p01410' => 'bna', 'A05p05420' => 'bna', 'A05p39630' => 'bna', 'A05p39640' => 'bna', 'A09p00970' => 'bna', 'A09p53060' => 'bna', 'A10p31890' => 'bna', 'Aa31LG10G15040' => 'aar', 'Aa31LG1G21090' => 'aar', 'Aa31LG1G26900' => 'aar', 'Aa31LG3G1820' => 'aar', 'Aa31LG5G1100' => 'aar', 'Aa31LG6G4740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2265' => 'aag', 'Actinidia07998' => 'ach', 'Actinidia11266' => 'ach', 'Actinidia12682' => 'ach', 'Actinidia26479' => 'ach', 'Actinidia31406' => 'ach', 'Actinidia32437' => 'ach', 'Actinidia38862' => 'ach', 'Ah.05g174230' => 'amhyb', 'Ah.05g179070' => 'amhyb', 'Ah.05g179090' => 'amhyb', 'Ah.12g059950' => 'amhyb', 'AL3G20480' => 'aly', 'AL4G44520' => 'aly', 'AL5G43110' => 'aly', 'AL6G13890' => 'aly', 'AL6G52620' => 'aly', 'AL7G30830' => 'aly', 'Aqoxy1G00899' => 'aox', 'Aqoxy5G04333' => 'aox', 'Aqoxy7G00641' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3IZ0NN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4EF6AW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W9P8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79GA3M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C43NQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFCU6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G95YVJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCHK29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LU1UG8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX91RN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGB4B1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8DA0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9H7JI' => 'arhy', 'AT3G09320' => 'ath', 'AT3G60800' => 'ath', 'AT4G00840' => 'ath', 'AT4G22750' => 'ath', 'AT5G04270' => 'ath', 'ATR0090G003' => 'atr', 'ATR0559G349' => 'atr', 'ATR0680G261' => 'atr', 'ATR0810G048' => 'atr', 'Atru.chr12.831' => 'acertr', 'Atru.chr5.303' => 'acertr', 'Atru.chr5.748' => 'acertr', 'Atru.chr8.1999' => 'acertr', 'Atru.chr9.1436' => 'acertr', 'AUR62004211' => 'cqu', 'AUR62004548' => 'cqu', 'AUR62013637' => 'cqu', 'AUR62022662' => 'cqu', 'AUR62025777' => 'cqu', 'AUR62042386' => 'cqu', 'BcaB01g02310' => 'bca', 'BcaB01g06062' => 'bca', 'BcaB02g08975' => 'bca', 'BcaB02g08980' => 'bca', 'BcaC01g04228' => 'bca', 'BcaC01g06830' => 'bca', 'BcaC02g10186' => 'bca', 'BcaC02g12214' => 'bca', 'BcaC04g24101' => 'bca', 'BcaC05g29520' => 'bca', 'BcaC05g29661' => 'bca', 'BcaC06g32130' => 'bca', 'BcaC06g32131' => 'bca', 'BcaC07g40601' => 'bca', 'BcaC07g42641' => 'bca', 'BcaNung01038' => 'bca', 'BcaNung01676' => 'bca', 'BcaNung02480' => 'bca', 'BcaNung07376' => 'bca', 'BolC3t16146H' => 'bol', 'BolC3t16637H' => 'bol', 'BolC4t22257H' => 'bol', 'BolC4t24728H' => 'bol', 'BolC5t34517H' => 'bol', 'BolC7t45703H' => 'bol', 'BolC8t51166H' => 'bol', 'BolC9t53038H' => 'bol', 'BolC9t60000H' => 'bol', 'BraA01t01345Z' => 'bra', 'BraA01t01346Z' => 'bra', 'BraA01t01348Z' => 'bra', 'BraA03t12347Z' => 'bra', 'BraA03t12775Z' => 'bra', 'BraA03t14439Z' => 'bra', 'BraA04t15860Z' => 'bra', 'BraA05t19511Z' => 'bra', 'BraA05t22746Z' => 'bra', 'BraA09t35767Z' => 'bra', 'BraA09t40732Z' => 'bra', 'BraA10t45233Z' => 'bra', 'C03p38720' => 'bna', 'C03p43680' => 'bna', 'C04p06350' => 'bna', 'C04p31800' => 'bna', 'C05p58680' => 'bna', 'C07p52110' => 'bna', 'C08p35760' => 'bna', 'C09p01050' => 'bna', 'C09p72600' => 'bna', 'CAN.G106.2' => 'can', 'CAN.G1482.1' => 'can', 'CAN.G324.12' => 'can', 'CAN.G388.20' => 'can', 'CAN.G412.7' => 'can', 'CAN.G694.32' => 'can', 'CAN.G92.12' => 'can', 'CANSAT11G2353' => 'cansat', 'CANSAT21G1398' => 'cansat', 'CANSAT56G2456' => 'cansat', 'CANSAT56G3031' => 'cansat', 'CANSAT56G4539' => 'cansat', 'CARHR083680' => 'chi', 'CARHR171190' => 'chi', 'CARHR209010' => 'chi', 'CARHR229680' => 'chi', 'CARHR249490' => 'chi', 'Carub.0003s0844' => 'cru', 'Carub.0005s2755' => 'cru', 'Carub.0006s0322' => 'cru', 'Carub.0006s3586' => 'cru', 'Carub.0007s1855' => 'cru', 'Ca_07808_v3' => 'car', 'Ca_09535_v3' => 'car', 'Ca_10548_v3' => 'car', 'Ca_19913_v3' => 'car', 'Ca_19916_v3' => 'car', 'Ca_19975_v3' => 'car', 'CBR_g22876' => 'cbr', 'CBR_g22879' => 'cbr', 'CBR_g38491' => 'cbr', 'CBR_g54185' => 'cbr', 'CBR_g54190' => 'cbr', 'Cc02_g11020' => 'ccan', 'Cc02_g23920' => 'ccan', 'Cc02_g39860' => 'ccan', 'Cc02_g39870' => 'ccan', 'Cc03_g06760' => 'ccan', 'Cc06_g02450' => 'ccan', 'Cc09_g09450' => 'ccan', 'CDE02G1959' => 'cde', 'CDE04G0600' => 'cde', 'CDE07G1996' => 'cde', 'CDE07G2078' => 'cde', 'CDE11G0611' => 'cde', 'Cfa001683' => 'cfa', 'Cfa001734' => 'cfa', 'Cfa001737' => 'cfa', 'Cfa003751' => 'cfa', 'Cfa012019' => 'cfa', 'Cfa017353' => 'cfa', 'Cfa017732' => 'cfa', 'Cfa022464' => 'cfa', 'Ciclev10012400m.g' => 'ccl', 'Ciclev10021242m.g' => 'ccl', 'Ciclev10021302m.g' => 'ccl', 'Ciclev10021463m.g' => 'ccl', 'Ciclev10032359m.g' => 'ccl', 'CiPaw.01G081000' => 'cil', 'CiPaw.01G262500' => 'cil', 'CiPaw.01G269800' => 'cil', 'CiPaw.02G168400' => 'cil', 'CiPaw.05G119500' => 'cil', 'CiPaw.11G147300' => 'cil', 'ClCG01G003630' => 'cla', 'ClCG05G000510' => 'cla', 'ClCG05G002300' => 'cla', 'ClCG08G007650' => 'cla', 'ClCG10G021250' => 'cla', 'COL.COLO4_06218' => 'col', 'COL.COLO4_12538' => 'col', 'COL.COLO4_14775' => 'col', 'COL.COLO4_23875' => 'col', 'Cpa.g.sc141.16' => 'cpa', 'Cpa.g.sc169.16' => 'cpa', 'Cpa.g.sc244.4' => 'cpa', 'Cpa.g.sc244.5' => 'cpa', 'Cpa.g.sc29.87' => 'cpa', 'Cpa.g.sc53.115' => 'cpa', 'Cre03.g207502' => 'cre', 'Cre06.g277000' => 'cre', 'Cre09.g394050' => 'cre', 'CsaV3_3G007680' => 'csa', 'CsaV3_3G009710' => 'csa', 'CsaV3_3G034790' => 'csa', 'CsaV3_5G003750' => 'csa', 'CsaV3_6G036620' => 'csa', 'CSS0002288' => 'camsi', 'CSS0011250' => 'camsi', 'CSS0021619' => 'camsi', 'CSS0046701' => 'camsi', 'DCAR_006420' => 'dca', 'DCAR_006865' => 'dca', 'DCAR_008558' => 'dca', 'DCAR_028754' => 'dca', 'DCAR_028755' => 'dca', 'Dinv31218' => 'din', 'Dinv32371' => 'din', 'Dinv34250' => 'din', 'Dinv37156' => 'din', 'Dinv43704' => 'din', 'Duzib093G1811' => 'dzi', 'Duzib106G1622' => 'dzi', 'Duzib114G0504' => 'dzi', 'Duzib128G0338' => 'dzi', 'Duzib128G1577' => 'dzi', 'Duzib133G0104' => 'dzi', 'Duzib133G1080' => 'dzi', 'Duzib138G0324' => 'dzi', 'Duzib138G0394' => 'dzi', 'Duzib205G0122' => 'dzi', 'Duzib268G1020' => 'dzi', 'Duzib268G1359' => 'dzi', 'ECA232G3929' => 'eca', 'ECA236G2210' => 'eca', 'ECA236G2287' => 'eca', 'ECA240G4568' => 'eca', 'ECA247G0894' => 'eca', 'EL10Ac1g00200' => 'bvu', 'EL10Ac1g00886' => 'bvu', 'EL10As1g23091' => 'bvu', 'EL10As1g23092' => 'bvu', 'Eucgr.A01284' => 'egr', 'Eucgr.A01285' => 'egr', 'Eucgr.D02456' => 'egr', 'Eucgr.E00018' => 'egr', 'Eucgr.E01439' => 'egr', 'Eucgr.G02859' => 'egr', 'FAN01G0168' => 'fan', 'FAN01G0453' => 'fan', 'FAN01G2761' => 'fan', 'FAN02G1239' => 'fan', 'FAN03G0645' => 'fan', 'FAN03G2707' => 'fan', 'FAN03G2978' => 'fan', 'FAN04G0227' => 'fan', 'FAN06G0091' => 'fan', 'FAN06G1418' => 'fan', 'FAN06G1512' => 'fan', 'FAN06G1986' => 'fan', 'FAN06G2905' => 'fan', 'FAN06G4325' => 'fan', 'FAN08G0033' => 'fan', 'FAN09G0642' => 'fan', 'FAN10G1763' => 'fan', 'FAN10G2026' => 'fan', 'FAN10G2513' => 'fan', 'FAN10G3402' => 'fan', 'FAN10G3564' => 'fan', 'FAN10G3987' => 'fan', 'FAN13G1490' => 'fan', 'FAN14G5857' => 'fan', 'FAN18G1188' => 'fan', 'FvH4_5g00750' => 'fve', 'FvH4_6g13410' => 'fve', 'FvH4_7g11740' => 'fve', 'FvH4_7g17410' => 'fve', 'FvH4_7g18860' => 'fve', 'Glyma.01G099100' => 'gma', 'Glyma.01G142300' => 'gma', 'Glyma.03G025500' => 'gma', 'Glyma.03G069700' => 'gma', 'Glyma.03G260000' => 'gma', 'Glyma.09G269800' => 'gma', 'Glyma.10G208700' => 'gma', 'Glyma.18G220400' => 'gma', 'Glyma.20G182000' => 'gma', 'Gohir.A01G221726' => 'ghi', 'Gohir.A07G134600' => 'ghi', 'Gohir.A07G146000' => 'ghi', 'Gohir.A08G173900' => 'ghi', 'Gohir.A09G194900' => 'ghi', 'Gohir.A10G204100' => 'ghi', 'Gohir.A11G080600' => 'ghi', 'Gohir.A11G327500' => 'ghi', 'Gohir.A12G101800' => 'ghi', 'Gohir.D01G211200' => 'ghi', 'Gohir.D07G139200' => 'ghi', 'Gohir.D07G152100' => 'ghi', 'Gohir.D08G192600' => 'ghi', 'Gohir.D09G189200' => 'ghi', 'Gohir.D10G212000' => 'ghi', 'Gohir.D11G085200' => 'ghi', 'Gohir.D11G346400' => 'ghi', 'Gohir.D12G104800' => 'ghi', 'Gorai.001G151300' => 'gra', 'Gorai.001G174100' => 'gra', 'Gorai.002G257000' => 'gra', 'Gorai.004G202600' => 'gra', 'Gorai.007G090900' => 'gra', 'Gorai.007G376700' => 'gra', 'Gorai.008G114100' => 'gra', 'Gorai.011G237900' => 'gra', 'GSVIVG01005450001' => 'vvi', 'GSVIVG01016232001' => 'vvi', 'GSVIVG01026157001' => 'vvi', 'GSVIVG01027419001' => 'vvi', 'GSVIVG01027631001' => 'vvi', 'GSVIVG01034143001' => 'vvi', 'HanXRQChr03g0093921' => 'han', 'HanXRQChr04g0120001' => 'han', 'HanXRQChr04g0122561' => 'han', 'HanXRQChr09g0246851' => 'han', 'HanXRQChr10g0293311' => 'han', 'HanXRQChr13g0425231' => 'han', 'HanXRQChr16g0532571' => 'han', 'Haze_09050' => 'cav', 'Haze_15715' => 'cav', 'Haze_15716' => 'cav', 'Haze_16803' => 'cav', 'Haze_16850' => 'cav', 'Hma1.2p1_0301F.1_g118655' => 'hma', 'Hma1.2p1_0309F.1_g120590' => 'hma', 'Hma1.2p1_0936F.1_g238900' => 'hma', 'Hma1.2p1_3552F.1_g336740' => 'hma', 'HPP92_003520' => 'vpl', 'HPP92_006628' => 'vpl', 'HPP92_006645' => 'vpl', 'HPP92_014669' => 'vpl', 'HPP92_015077' => 'vpl', 'Hund16742' => 'sun', 'Hund17022' => 'sun', 'Lalb_Chr02g0152131' => 'lal', 'Lalb_Chr05g0225371' => 'lal', 'Lalb_Chr07g0189841' => 'lal', 'Lalb_Chr07g0192961' => 'lal', 'Lalb_Chr12g0208221' => 'lal', 'Lalb_Chr13g0291211' => 'lal', 'Lalb_Chr13g0291781' => 'lal', 'Lalb_Chr18g0044651' => 'lal', 'Lalb_Chr21g0313731' => 'lal', 'Lj1g0022533' => 'lja', 'Lj2A18T50' => 'lonja', 'Lj2A92G93' => 'lonja', 'Lj3A965T73' => 'lonja', 'Lj3g0000673' => 'lja', 'Lj3g0002666' => 'lja', 'Lj4g0016985' => 'lja', 'Lj5g0003625' => 'lja', 'Lj7A529G36' => 'lonja', 'Lj9A569T49' => 'lonja', 'Lj9A604T63' => 'lonja', 'Lsat_1_v5_gn_3_132060' => 'lsa', 'Lsat_1_v5_gn_4_68941' => 'lsa', 'Lsat_1_v5_gn_5_95580' => 'lsa', 'Lsat_1_v5_gn_7_161' => 'lsa', 'Lsat_1_v5_gn_7_7041' => 'lsa', 'Lsat_1_v5_gn_9_33481' => 'lsa', 'Lsat_1_v5_gn_9_68260' => 'lsa', 'Manes.01G073100' => 'mes', 'Manes.01G266300' => 'mes', 'Manes.02G033300' => 'mes', 'Manes.05G017900' => 'mes', 'Manes.05G046100' => 'mes', 'Manes.08G080900' => 'mes', 'Manes.10G049400' => 'mes', 'Mapoly0009s0186' => 'mpo', 'Mapoly0036s0118' => 'mpo', 'Mapoly0101s0046' => 'mpo', 'MBI04_g30218_MAGBIO' => 'mbi', 'MBI04_g35564_MAGBIO' => 'mbi', 'MBI12_g34011_MAGBIO' => 'mbi', 'MBI14_g04655_MAGBIO' => 'mbi', 'MCO07G653' => 'mco', 'MCO10G173' => 'mco', 'MD01G1087100' => 'mdo', 'MD01G1104200' => 'mdo', 'MD02G1205100' => 'mdo', 'MD04G1079200' => 'mdo', 'MD04G1131400' => 'mdo', 'MD07G1121600' => 'mdo', 'MD07G1157300' => 'mdo', 'MD07G1171000' => 'mdo', 'MD12G1144500' => 'mdo', 'Medtr1g094610' => 'mtr', 'Medtr4g021795' => 'mtr', 'Medtr4g023760' => 'mtr', 'Medtr7g118050' => 'mtr', 'MELO3C005582.2' => 'cme', 'MELO3C005989.2' => 'cme', 'MELO3C006192.2' => 'cme', 'MELO3C009248.2' => 'cme', 'MELO3C019817.2' => 'cme', 'Migut.B01625' => 'egut', 'Migut.B01915' => 'egut', 'Migut.F01721' => 'egut', 'Migut.J00314' => 'egut', 'MSTRG.20742' => 'ama', 'MSTRG.8134' => 'ama', 'Nitab4.5_0000096g0010' => 'nta', 'Nitab4.5_0000202g0030' => 'nta', 'Nitab4.5_0000216g0370' => 'nta', 'Nitab4.5_0000457g0230' => 'nta', 'Nitab4.5_0001702g0170' => 'nta', 'Nitab4.5_0003607g0010' => 'nta', 'Nitab4.5_0004917g0020' => 'nta', 'Nitab4.5_0007059g0010' => 'nta', 'Nitab4.5_0007184g0010' => 'nta', 'Nitab4.5_0007346g0020' => 'nta', 'Nn1g00410' => 'nnu', 'Nn1g01252' => 'nnu', 'Nn2g11168' => 'nnu', 'Nn2g13403' => 'nnu', 'Nn2g13760' => 'nnu', 'Nn4g26380' => 'nnu', 'Oeu000806.2' => 'oeu', 'Oeu005788.1' => 'oeu', 'Oeu006900.3' => 'oeu', 'Oeu007797.1' => 'oeu', 'Oeu011932.1' => 'oeu', 'Oeu022739.1' => 'oeu', 'Oeu037918.1' => 'oeu', 'Oeu055490.2' => 'oeu', 'Os01g0844400' => 'osa', 'Os02g0819100' => 'osa', 'Os03g0804300' => 'osa', 'Os05g0458000' => 'osa', 'Os07g0467800' => 'osa', 'Os12g0602200' => 'osa', 'Peaxi162Scf00013g03444' => 'pax', 'Peaxi162Scf00094g01120' => 'pax', 'Peaxi162Scf00191g01211' => 'pax', 'Peaxi162Scf00238g01110' => 'pax', 'Peaxi162Scf00330g00719' => 'pax', 'Peaxi162Scf00627g00018' => 'pax', 'PGR031G2686' => 'pgr', 'PGR042G0809' => 'pgr', 'PGR142G0193' => 'pgr', 'PGSC0003DMG400011066' => 'stu', 'PGSC0003DMG400012041' => 'stu', 'PGSC0003DMG400013678' => 'stu', 'PGSC0003DMG400023477' => 'stu', 'PGSC0003DMG400025956' => 'stu', 'PGSC0003DMG401019151' => 'stu', 'Phvul.006G116400' => 'pvu', 'Phvul.007G097300' => 'pvu', 'Phvul.010G015000' => 'pvu', 'Phvul.010G083900' => 'pvu', 'Potri.001G117100' => 'ptr', 'Potri.002G147300' => 'ptr', 'Potri.003G115600' => 'ptr', 'Potri.006G087400' => 'ptr', 'Potri.010G226100' => 'ptr', 'Potri.014G069200' => 'ptr', 'Potri.014G104000' => 'ptr', 'Potri.016G100200' => 'ptr', 'Pp3c10_20450' => 'ppa', 'Pp3c1_42400' => 'ppa', 'Pp3c3_24390' => 'ppa', 'Pp3c3_2860' => 'ppa', 'PRCOL_00003193' => 'pco', 'Prupe.2G144500' => 'ppe', 'Prupe.2G195700' => 'ppe', 'Prupe.2G209800' => 'ppe', 'Prupe.5G080000' => 'ppe', 'Prupe.6G257900' => 'ppe', 'Psat3g001160' => 'psa', 'Psat6g181880' => 'psa', 'Psat7g233720' => 'psa', 'PSO063G7587' => 'pso', 'PSO339G2145' => 'pso', 'PSO339G3369' => 'pso', 'PSO478G2747' => 'pso', 'PSO513G0140' => 'pso', 'PSO782G1614' => 'pso', 'PSO782G4889' => 'pso', 'PSO782G5485' => 'pso', 'PSO801G0241' => 'pso', 'QL07p048854' => 'qlo', 'QL08p046745' => 'qlo', 'QL08p052606' => 'qlo', 'QL08p053414' => 'qlo', 'QL08p054868' => 'qlo', 'RcHm_v2.0_Chr1g0350251' => 'rch', 'RcHm_v2.0_Chr1g0360851' => 'rch', 'RcHm_v2.0_Chr1g0362791' => 'rch', 'RcHm_v2.0_Chr3g0466281' => 'rch', 'RcHm_v2.0_Chr7g0201481' => 'rch', 'Rhsim01G0148600' => 'rsi', 'Rhsim05G0194400' => 'rsi', 'Rhsim07G0000700' => 'rsi', 'Rhsim07G0000800' => 'rsi', 'Rhsim07G0027900' => 'rsi', 'Rhsim09G0149500' => 'rsi', 'RhsimUnG0186900' => 'rsi', 'Sabra01G0089900' => 'sbr', 'Sabra02G0114700' => 'sbr', 'Sabra02G0116300' => 'sbr', 'Sabra03G0080100' => 'sbr', 'Sabra08G0024300' => 'sbr', 'Sabra10G0174300' => 'sbr', 'Sabra14G0048900' => 'sbr', 'Sabra14G0076500' => 'sbr', 'SalBow5G2513' => 'sbo', 'Sc01g0002300' => 'sci', 'Sc01g0004450' => 'sci', 'Sc06g0001680' => 'sci', 'Sc23g0003580' => 'sci', 'Sed0000913' => 'sed', 'Sed0001655' => 'sed', 'Sed0007745' => 'sed', 'Sed0010951' => 'sed', 'Sed0017599' => 'sed', 'Sed0021405' => 'sed', 'Sed0022810' => 'sed', 'SEGI_07099' => 'sgi', 'SEGI_11931' => 'sgi', 'SEGI_13187' => 'sgi', 'SEGI_29958' => 'sgi', 'SEGI_36351' => 'sgi', 'SGA_v2.0_scaffold126G33770' => 'sas', 'SGA_v2.0_scaffold153G37003' => 'sas', 'SGA_v2.0_scaffold2G01359' => 'sas', 'SGA_v2.0_scaffold5G03064' => 'sas', 'SGA_v2.0_scaffold95G28903' => 'sas', 'SHI12701' => 'shi', 'SHI26410' => 'shi', 'SHI38997' => 'shi', 'SHI53759' => 'shi', 'SHI53886' => 'shi', 'SHI54714' => 'shi', 'SMO011G0041' => 'smo', 'SMO146G0251' => 'smo', 'SMO160G0004' => 'smo', 'SMO174G0057' => 'smo', 'SMO244G0089' => 'smo', 'SMO296G0011' => 'smo', 'Solyc01g091280.3' => 'sly', 'Solyc05g047610.3' => 'sly', 'Solyc05g047640.3' => 'sly', 'Solyc05g055630.3' => 'sly', 'Solyc10g018160.2' => 'sly', 'Solyc10g084820.2' => 'sly', 'Solyc10g086565.2' => 'sly', 'Sopen01g037030' => 'spe', 'Sopen05g027920' => 'spe', 'Sopen05g034070' => 'spe', 'Sopen10g007260' => 'spe', 'Sopen10g034260' => 'spe', 'Sopen10g035950' => 'spe', 'Sp3g07710' => 'spa', 'Sp4g27420' => 'spa', 'Sp5g02450' => 'spa', 'Sp6g01280' => 'spa', 'Sp6g38480' => 'spa', 'Sp7g20780' => 'spa', 'TAR374G1413' => 'tar', 'TAR623G1777' => 'tar', 'TAR629G2370' => 'tar', 'TAR633G1759' => 'tar', 'TAR636G3387' => 'tar', 'THA.LOC104802447' => 'tha', 'THA.LOC104813916' => 'tha', 'THA.LOC104816423' => 'tha', 'THA.LOC104817246' => 'tha', 'THA.LOC104825895' => 'tha', 'Thecc.01G335200' => 'tca', 'Thecc.01G377400' => 'tca', 'Thecc.03G262200' => 'tca', 'Thecc.05G036800' => 'tca', 'Thecc.10G080500' => 'tca', 'Thecc.10G080800' => 'tca', 'Thhalv10001560m.g' => 'esa', 'Thhalv10006120m.g' => 'esa', 'Thhalv10014375m.g' => 'esa', 'Thhalv10021264m.g' => 'esa', 'Thhalv10028856m.g' => 'esa', 'TPR.G1914' => 'tpr', 'TPR.G4757' => 'tpr', 'TPR.G5595' => 'tpr', 'TWI14G0952' => 'twi', 'TWI14G1307' => 'twi', 'TWI38G2143' => 'twi', 'TWI59G0826' => 'twi', 'TWI77G0527' => 'twi', 'TWI81G0150' => 'twi', 'unitig_21.g21018' => 'ugi', 'unitig_26.g9725' => 'ugi', 'unitig_744.g24653' => 'ugi', 'unitig_749.g13778' => 'ugi', 'unitig_899.g15035' => 'ugi', 'vmacro04296' => 'vma', 'vmacro04852' => 'vma', 'vmacro13404' => 'vma', 'vmacro20169' => 'vma', 'vmacro21014' => 'vma', 'VMungo0331G0237' => 'vmu', 'VMungo0331G0706' => 'vmu', 'VMungo0331G1361' => 'vmu', 'VMungo0331G1489' => 'vmu', 'VMungo0540G1037' => 'vmu', 'VMungo0720G2487' => 'vmu', 'VMungo0720G2721' => 'vmu', 'Zm00001eb086860' => 'zma', 'Zm00001eb104760' => 'zma', 'Zm00001eb148220' => 'zma', 'Zm00001eb259030' => 'zma', 'Zm00001eb289590' => 'zma', 'Zm00001eb420150' => 'zma' ), 'gf_id' => 'HOM05D000968', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000968' ), 'data_identifier' => 'HOM05D000968', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000968', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p31690' => 'bna', 'A03p36040' => 'bna', 'A03p53730' => 'bna', 'A04p01410' => 'bna', 'A05p05420' => 'bna', 'A05p39630' => 'bna', 'A05p39640' => 'bna', 'A09p00970' => 'bna', 'A09p53060' => 'bna', 'A10p31890' => 'bna', 'Aa31LG10G15040' => 'aar', 'Aa31LG1G21090' => 'aar', 'Aa31LG1G26900' => 'aar', 'Aa31LG3G1820' => 'aar', 'Aa31LG5G1100' => 'aar', 'Aa31LG6G4740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2265' => 'aag', 'Actinidia07998' => 'ach', 'Actinidia11266' => 'ach', 'Actinidia12682' => 'ach', 'Actinidia26479' => 'ach', 'Actinidia31406' => 'ach', 'Actinidia32437' => 'ach', 'Actinidia38862' => 'ach', 'Ah.05g174230' => 'amhyb', 'Ah.05g179070' => 'amhyb', 'Ah.05g179090' => 'amhyb', 'Ah.12g059950' => 'amhyb', 'AL3G20480' => 'aly', 'AL4G44520' => 'aly', 'AL5G43110' => 'aly', 'AL6G13890' => 'aly', 'AL6G52620' => 'aly', 'AL7G30830' => 'aly', 'Aqoxy1G00899' => 'aox', 'Aqoxy5G04333' => 'aox', 'Aqoxy7G00641' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3IZ0NN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4EF6AW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W9P8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79GA3M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C43NQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFCU6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G95YVJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCHK29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LU1UG8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX91RN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGB4B1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8DA0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9H7JI' => 'arhy', 'AT3G09320' => 'ath', 'AT3G60800' => 'ath', 'AT4G00840' => 'ath', 'AT4G22750' => 'ath', 'AT5G04270' => 'ath', 'ATR0090G003' => 'atr', 'ATR0559G349' => 'atr', 'ATR0680G261' => 'atr', 'ATR0810G048' => 'atr', 'Atru.chr12.831' => 'acertr', 'Atru.chr5.303' => 'acertr', 'Atru.chr5.748' => 'acertr', 'Atru.chr8.1999' => 'acertr', 'Atru.chr9.1436' => 'acertr', 'AUR62004211' => 'cqu', 'AUR62004548' => 'cqu', 'AUR62013637' => 'cqu', 'AUR62022662' => 'cqu', 'AUR62025777' => 'cqu', 'AUR62042386' => 'cqu', 'BcaB01g02310' => 'bca', 'BcaB01g06062' => 'bca', 'BcaB02g08975' => 'bca', 'BcaB02g08980' => 'bca', 'BcaC01g04228' => 'bca', 'BcaC01g06830' => 'bca', 'BcaC02g10186' => 'bca', 'BcaC02g12214' => 'bca', 'BcaC04g24101' => 'bca', 'BcaC05g29520' => 'bca', 'BcaC05g29661' => 'bca', 'BcaC06g32130' => 'bca', 'BcaC06g32131' => 'bca', 'BcaC07g40601' => 'bca', 'BcaC07g42641' => 'bca', 'BcaNung01038' => 'bca', 'BcaNung01676' => 'bca', 'BcaNung02480' => 'bca', 'BcaNung07376' => 'bca', 'BolC3t16146H' => 'bol', 'BolC3t16637H' => 'bol', 'BolC4t22257H' => 'bol', 'BolC4t24728H' => 'bol', 'BolC5t34517H' => 'bol', 'BolC7t45703H' => 'bol', 'BolC8t51166H' => 'bol', 'BolC9t53038H' => 'bol', 'BolC9t60000H' => 'bol', 'BraA01t01345Z' => 'bra', 'BraA01t01346Z' => 'bra', 'BraA01t01348Z' => 'bra', 'BraA03t12347Z' => 'bra', 'BraA03t12775Z' => 'bra', 'BraA03t14439Z' => 'bra', 'BraA04t15860Z' => 'bra', 'BraA05t19511Z' => 'bra', 'BraA05t22746Z' => 'bra', 'BraA09t35767Z' => 'bra', 'BraA09t40732Z' => 'bra', 'BraA10t45233Z' => 'bra', 'C03p38720' => 'bna', 'C03p43680' => 'bna', 'C04p06350' => 'bna', 'C04p31800' => 'bna', 'C05p58680' => 'bna', 'C07p52110' => 'bna', 'C08p35760' => 'bna', 'C09p01050' => 'bna', 'C09p72600' => 'bna', 'CAN.G106.2' => 'can', 'CAN.G1482.1' => 'can', 'CAN.G324.12' => 'can', 'CAN.G388.20' => 'can', 'CAN.G412.7' => 'can', 'CAN.G694.32' => 'can', 'CAN.G92.12' => 'can', 'CANSAT11G2353' => 'cansat', 'CANSAT21G1398' => 'cansat', 'CANSAT56G2456' => 'cansat', 'CANSAT56G3031' => 'cansat', 'CANSAT56G4539' => 'cansat', 'CARHR083680' => 'chi', 'CARHR171190' => 'chi', 'CARHR209010' => 'chi', 'CARHR229680' => 'chi', 'CARHR249490' => 'chi', 'Carub.0003s0844' => 'cru', 'Carub.0005s2755' => 'cru', 'Carub.0006s0322' => 'cru', 'Carub.0006s3586' => 'cru', 'Carub.0007s1855' => 'cru', 'Ca_07808_v3' => 'car', 'Ca_09535_v3' => 'car', 'Ca_10548_v3' => 'car', 'Ca_19913_v3' => 'car', 'Ca_19916_v3' => 'car', 'Ca_19975_v3' => 'car', 'CBR_g22876' => 'cbr', 'CBR_g22879' => 'cbr', 'CBR_g38491' => 'cbr', 'CBR_g54185' => 'cbr', 'CBR_g54190' => 'cbr', 'Cc02_g11020' => 'ccan', 'Cc02_g23920' => 'ccan', 'Cc02_g39860' => 'ccan', 'Cc02_g39870' => 'ccan', 'Cc03_g06760' => 'ccan', 'Cc06_g02450' => 'ccan', 'Cc09_g09450' => 'ccan', 'CDE02G1959' => 'cde', 'CDE04G0600' => 'cde', 'CDE07G1996' => 'cde', 'CDE07G2078' => 'cde', 'CDE11G0611' => 'cde', 'Cfa001683' => 'cfa', 'Cfa001734' => 'cfa', 'Cfa001737' => 'cfa', 'Cfa003751' => 'cfa', 'Cfa012019' => 'cfa', 'Cfa017353' => 'cfa', 'Cfa017732' => 'cfa', 'Cfa022464' => 'cfa', 'Ciclev10012400m.g' => 'ccl', 'Ciclev10021242m.g' => 'ccl', 'Ciclev10021302m.g' => 'ccl', 'Ciclev10021463m.g' => 'ccl', 'Ciclev10032359m.g' => 'ccl', 'CiPaw.01G081000' => 'cil', 'CiPaw.01G262500' => 'cil', 'CiPaw.01G269800' => 'cil', 'CiPaw.02G168400' => 'cil', 'CiPaw.05G119500' => 'cil', 'CiPaw.11G147300' => 'cil', 'ClCG01G003630' => 'cla', 'ClCG05G000510' => 'cla', 'ClCG05G002300' => 'cla', 'ClCG08G007650' => 'cla', 'ClCG10G021250' => 'cla', 'COL.COLO4_06218' => 'col', 'COL.COLO4_12538' => 'col', 'COL.COLO4_14775' => 'col', 'COL.COLO4_23875' => 'col', 'Cpa.g.sc141.16' => 'cpa', 'Cpa.g.sc169.16' => 'cpa', 'Cpa.g.sc244.4' => 'cpa', 'Cpa.g.sc244.5' => 'cpa', 'Cpa.g.sc29.87' => 'cpa', 'Cpa.g.sc53.115' => 'cpa', 'Cre03.g207502' => 'cre', 'Cre06.g277000' => 'cre', 'Cre09.g394050' => 'cre', 'CsaV3_3G007680' => 'csa', 'CsaV3_3G009710' => 'csa', 'CsaV3_3G034790' => 'csa', 'CsaV3_5G003750' => 'csa', 'CsaV3_6G036620' => 'csa', 'CSS0002288' => 'camsi', 'CSS0011250' => 'camsi', 'CSS0021619' => 'camsi', 'CSS0046701' => 'camsi', 'DCAR_006420' => 'dca', 'DCAR_006865' => 'dca', 'DCAR_008558' => 'dca', 'DCAR_028754' => 'dca', 'DCAR_028755' => 'dca', 'Dinv31218' => 'din', 'Dinv32371' => 'din', 'Dinv34250' => 'din', 'Dinv37156' => 'din', 'Dinv43704' => 'din', 'Duzib093G1811' => 'dzi', 'Duzib106G1622' => 'dzi', 'Duzib114G0504' => 'dzi', 'Duzib128G0338' => 'dzi', 'Duzib128G1577' => 'dzi', 'Duzib133G0104' => 'dzi', 'Duzib133G1080' => 'dzi', 'Duzib138G0324' => 'dzi', 'Duzib138G0394' => 'dzi', 'Duzib205G0122' => 'dzi', 'Duzib268G1020' => 'dzi', 'Duzib268G1359' => 'dzi', 'ECA232G3929' => 'eca', 'ECA236G2210' => 'eca', 'ECA236G2287' => 'eca', 'ECA240G4568' => 'eca', 'ECA247G0894' => 'eca', 'EL10Ac1g00200' => 'bvu', 'EL10Ac1g00886' => 'bvu', 'EL10As1g23091' => 'bvu', 'EL10As1g23092' => 'bvu', 'Eucgr.A01284' => 'egr', 'Eucgr.A01285' => 'egr', 'Eucgr.D02456' => 'egr', 'Eucgr.E00018' => 'egr', 'Eucgr.E01439' => 'egr', 'Eucgr.G02859' => 'egr', 'FAN01G0168' => 'fan', 'FAN01G0453' => 'fan', 'FAN01G2761' => 'fan', 'FAN02G1239' => 'fan', 'FAN03G0645' => 'fan', 'FAN03G2707' => 'fan', 'FAN03G2978' => 'fan', 'FAN04G0227' => 'fan', 'FAN06G0091' => 'fan', 'FAN06G1418' => 'fan', 'FAN06G1512' => 'fan', 'FAN06G1986' => 'fan', 'FAN06G2905' => 'fan', 'FAN06G4325' => 'fan', 'FAN08G0033' => 'fan', 'FAN09G0642' => 'fan', 'FAN10G1763' => 'fan', 'FAN10G2026' => 'fan', 'FAN10G2513' => 'fan', 'FAN10G3402' => 'fan', 'FAN10G3564' => 'fan', 'FAN10G3987' => 'fan', 'FAN13G1490' => 'fan', 'FAN14G5857' => 'fan', 'FAN18G1188' => 'fan', 'FvH4_5g00750' => 'fve', 'FvH4_6g13410' => 'fve', 'FvH4_7g11740' => 'fve', 'FvH4_7g17410' => 'fve', 'FvH4_7g18860' => 'fve', 'Glyma.01G099100' => 'gma', 'Glyma.01G142300' => 'gma', 'Glyma.03G025500' => 'gma', 'Glyma.03G069700' => 'gma', 'Glyma.03G260000' => 'gma', 'Glyma.09G269800' => 'gma', 'Glyma.10G208700' => 'gma', 'Glyma.18G220400' => 'gma', 'Glyma.20G182000' => 'gma', 'Gohir.A01G221726' => 'ghi', 'Gohir.A07G134600' => 'ghi', 'Gohir.A07G146000' => 'ghi', 'Gohir.A08G173900' => 'ghi', 'Gohir.A09G194900' => 'ghi', 'Gohir.A10G204100' => 'ghi', 'Gohir.A11G080600' => 'ghi', 'Gohir.A11G327500' => 'ghi', 'Gohir.A12G101800' => 'ghi', 'Gohir.D01G211200' => 'ghi', 'Gohir.D07G139200' => 'ghi', 'Gohir.D07G152100' => 'ghi', 'Gohir.D08G192600' => 'ghi', 'Gohir.D09G189200' => 'ghi', 'Gohir.D10G212000' => 'ghi', 'Gohir.D11G085200' => 'ghi', 'Gohir.D11G346400' => 'ghi', 'Gohir.D12G104800' => 'ghi', 'Gorai.001G151300' => 'gra', 'Gorai.001G174100' => 'gra', 'Gorai.002G257000' => 'gra', 'Gorai.004G202600' => 'gra', 'Gorai.007G090900' => 'gra', 'Gorai.007G376700' => 'gra', 'Gorai.008G114100' => 'gra', 'Gorai.011G237900' => 'gra', 'GSVIVG01005450001' => 'vvi', 'GSVIVG01016232001' => 'vvi', 'GSVIVG01026157001' => 'vvi', 'GSVIVG01027419001' => 'vvi', 'GSVIVG01027631001' => 'vvi', 'GSVIVG01034143001' => 'vvi', 'HanXRQChr03g0093921' => 'han', 'HanXRQChr04g0120001' => 'han', 'HanXRQChr04g0122561' => 'han', 'HanXRQChr09g0246851' => 'han', 'HanXRQChr10g0293311' => 'han', 'HanXRQChr13g0425231' => 'han', 'HanXRQChr16g0532571' => 'han', 'Haze_09050' => 'cav', 'Haze_15715' => 'cav', 'Haze_15716' => 'cav', 'Haze_16803' => 'cav', 'Haze_16850' => 'cav', 'Hma1.2p1_0301F.1_g118655' => 'hma', 'Hma1.2p1_0309F.1_g120590' => 'hma', 'Hma1.2p1_0936F.1_g238900' => 'hma', 'Hma1.2p1_3552F.1_g336740' => 'hma', 'HPP92_003520' => 'vpl', 'HPP92_006628' => 'vpl', 'HPP92_006645' => 'vpl', 'HPP92_014669' => 'vpl', 'HPP92_015077' => 'vpl', 'Hund16742' => 'sun', 'Hund17022' => 'sun', 'Lalb_Chr02g0152131' => 'lal', 'Lalb_Chr05g0225371' => 'lal', 'Lalb_Chr07g0189841' => 'lal', 'Lalb_Chr07g0192961' => 'lal', 'Lalb_Chr12g0208221' => 'lal', 'Lalb_Chr13g0291211' => 'lal', 'Lalb_Chr13g0291781' => 'lal', 'Lalb_Chr18g0044651' => 'lal', 'Lalb_Chr21g0313731' => 'lal', 'Lj1g0022533' => 'lja', 'Lj2A18T50' => 'lonja', 'Lj2A92G93' => 'lonja', 'Lj3A965T73' => 'lonja', 'Lj3g0000673' => 'lja', 'Lj3g0002666' => 'lja', 'Lj4g0016985' => 'lja', 'Lj5g0003625' => 'lja', 'Lj7A529G36' => 'lonja', 'Lj9A569T49' => 'lonja', 'Lj9A604T63' => 'lonja', 'Lsat_1_v5_gn_3_132060' => 'lsa', 'Lsat_1_v5_gn_4_68941' => 'lsa', 'Lsat_1_v5_gn_5_95580' => 'lsa', 'Lsat_1_v5_gn_7_161' => 'lsa', 'Lsat_1_v5_gn_7_7041' => 'lsa', 'Lsat_1_v5_gn_9_33481' => 'lsa', 'Lsat_1_v5_gn_9_68260' => 'lsa', 'Manes.01G073100' => 'mes', 'Manes.01G266300' => 'mes', 'Manes.02G033300' => 'mes', 'Manes.05G017900' => 'mes', 'Manes.05G046100' => 'mes', 'Manes.08G080900' => 'mes', 'Manes.10G049400' => 'mes', 'Mapoly0009s0186' => 'mpo', 'Mapoly0036s0118' => 'mpo', 'Mapoly0101s0046' => 'mpo', 'MBI04_g30218_MAGBIO' => 'mbi', 'MBI04_g35564_MAGBIO' => 'mbi', 'MBI12_g34011_MAGBIO' => 'mbi', 'MBI14_g04655_MAGBIO' => 'mbi', 'MCO07G653' => 'mco', 'MCO10G173' => 'mco', 'MD01G1087100' => 'mdo', 'MD01G1104200' => 'mdo', 'MD02G1205100' => 'mdo', 'MD04G1079200' => 'mdo', 'MD04G1131400' => 'mdo', 'MD07G1121600' => 'mdo', 'MD07G1157300' => 'mdo', 'MD07G1171000' => 'mdo', 'MD12G1144500' => 'mdo', 'Medtr1g094610' => 'mtr', 'Medtr4g021795' => 'mtr', 'Medtr4g023760' => 'mtr', 'Medtr7g118050' => 'mtr', 'MELO3C005582.2' => 'cme', 'MELO3C005989.2' => 'cme', 'MELO3C006192.2' => 'cme', 'MELO3C009248.2' => 'cme', 'MELO3C019817.2' => 'cme', 'Migut.B01625' => 'egut', 'Migut.B01915' => 'egut', 'Migut.F01721' => 'egut', 'Migut.J00314' => 'egut', 'MSTRG.20742' => 'ama', 'MSTRG.8134' => 'ama', 'Nitab4.5_0000096g0010' => 'nta', 'Nitab4.5_0000202g0030' => 'nta', 'Nitab4.5_0000216g0370' => 'nta', 'Nitab4.5_0000457g0230' => 'nta', 'Nitab4.5_0001702g0170' => 'nta', 'Nitab4.5_0003607g0010' => 'nta', 'Nitab4.5_0004917g0020' => 'nta', 'Nitab4.5_0007059g0010' => 'nta', 'Nitab4.5_0007184g0010' => 'nta', 'Nitab4.5_0007346g0020' => 'nta', 'Nn1g00410' => 'nnu', 'Nn1g01252' => 'nnu', 'Nn2g11168' => 'nnu', 'Nn2g13403' => 'nnu', 'Nn2g13760' => 'nnu', 'Nn4g26380' => 'nnu', 'Oeu000806.2' => 'oeu', 'Oeu005788.1' => 'oeu', 'Oeu006900.3' => 'oeu', 'Oeu007797.1' => 'oeu', 'Oeu011932.1' => 'oeu', 'Oeu022739.1' => 'oeu', 'Oeu037918.1' => 'oeu', 'Oeu055490.2' => 'oeu', 'Os01g0844400' => 'osa', 'Os02g0819100' => 'osa', 'Os03g0804300' => 'osa', 'Os05g0458000' => 'osa', 'Os07g0467800' => 'osa', 'Os12g0602200' => 'osa', 'Peaxi162Scf00013g03444' => 'pax', 'Peaxi162Scf00094g01120' => 'pax', 'Peaxi162Scf00191g01211' => 'pax', 'Peaxi162Scf00238g01110' => 'pax', 'Peaxi162Scf00330g00719' => 'pax', 'Peaxi162Scf00627g00018' => 'pax', 'PGR031G2686' => 'pgr', 'PGR042G0809' => 'pgr', 'PGR142G0193' => 'pgr', 'PGSC0003DMG400011066' => 'stu', 'PGSC0003DMG400012041' => 'stu', 'PGSC0003DMG400013678' => 'stu', 'PGSC0003DMG400023477' => 'stu', 'PGSC0003DMG400025956' => 'stu', 'PGSC0003DMG401019151' => 'stu', 'Phvul.006G116400' => 'pvu', 'Phvul.007G097300' => 'pvu', 'Phvul.010G015000' => 'pvu', 'Phvul.010G083900' => 'pvu', 'Potri.001G117100' => 'ptr', 'Potri.002G147300' => 'ptr', 'Potri.003G115600' => 'ptr', 'Potri.006G087400' => 'ptr', 'Potri.010G226100' => 'ptr', 'Potri.014G069200' => 'ptr', 'Potri.014G104000' => 'ptr', 'Potri.016G100200' => 'ptr', 'Pp3c10_20450' => 'ppa', 'Pp3c1_42400' => 'ppa', 'Pp3c3_24390' => 'ppa', 'Pp3c3_2860' => 'ppa', 'PRCOL_00003193' => 'pco', 'Prupe.2G144500' => 'ppe', 'Prupe.2G195700' => 'ppe', 'Prupe.2G209800' => 'ppe', 'Prupe.5G080000' => 'ppe', 'Prupe.6G257900' => 'ppe', 'Psat3g001160' => 'psa', 'Psat6g181880' => 'psa', 'Psat7g233720' => 'psa', 'PSO063G7587' => 'pso', 'PSO339G2145' => 'pso', 'PSO339G3369' => 'pso', 'PSO478G2747' => 'pso', 'PSO513G0140' => 'pso', 'PSO782G1614' => 'pso', 'PSO782G4889' => 'pso', 'PSO782G5485' => 'pso', 'PSO801G0241' => 'pso', 'QL07p048854' => 'qlo', 'QL08p046745' => 'qlo', 'QL08p052606' => 'qlo', 'QL08p053414' => 'qlo', 'QL08p054868' => 'qlo', 'RcHm_v2.0_Chr1g0350251' => 'rch', 'RcHm_v2.0_Chr1g0360851' => 'rch', 'RcHm_v2.0_Chr1g0362791' => 'rch', 'RcHm_v2.0_Chr3g0466281' => 'rch', 'RcHm_v2.0_Chr7g0201481' => 'rch', 'Rhsim01G0148600' => 'rsi', 'Rhsim05G0194400' => 'rsi', 'Rhsim07G0000700' => 'rsi', 'Rhsim07G0000800' => 'rsi', 'Rhsim07G0027900' => 'rsi', 'Rhsim09G0149500' => 'rsi', 'RhsimUnG0186900' => 'rsi', 'Sabra01G0089900' => 'sbr', 'Sabra02G0114700' => 'sbr', 'Sabra02G0116300' => 'sbr', 'Sabra03G0080100' => 'sbr', 'Sabra08G0024300' => 'sbr', 'Sabra10G0174300' => 'sbr', 'Sabra14G0048900' => 'sbr', 'Sabra14G0076500' => 'sbr', 'SalBow5G2513' => 'sbo', 'Sc01g0002300' => 'sci', 'Sc01g0004450' => 'sci', 'Sc06g0001680' => 'sci', 'Sc23g0003580' => 'sci', 'Sed0000913' => 'sed', 'Sed0001655' => 'sed', 'Sed0007745' => 'sed', 'Sed0010951' => 'sed', 'Sed0017599' => 'sed', 'Sed0021405' => 'sed', 'Sed0022810' => 'sed', 'SEGI_07099' => 'sgi', 'SEGI_11931' => 'sgi', 'SEGI_13187' => 'sgi', 'SEGI_29958' => 'sgi', 'SEGI_36351' => 'sgi', 'SGA_v2.0_scaffold126G33770' => 'sas', 'SGA_v2.0_scaffold153G37003' => 'sas', 'SGA_v2.0_scaffold2G01359' => 'sas', 'SGA_v2.0_scaffold5G03064' => 'sas', 'SGA_v2.0_scaffold95G28903' => 'sas', 'SHI12701' => 'shi', 'SHI26410' => 'shi', 'SHI38997' => 'shi', 'SHI53759' => 'shi', 'SHI53886' => 'shi', 'SHI54714' => 'shi', 'SMO011G0041' => 'smo', 'SMO146G0251' => 'smo', 'SMO160G0004' => 'smo', 'SMO174G0057' => 'smo', 'SMO244G0089' => 'smo', 'SMO296G0011' => 'smo', 'Solyc01g091280.3' => 'sly', 'Solyc05g047610.3' => 'sly', 'Solyc05g047640.3' => 'sly', 'Solyc05g055630.3' => 'sly', 'Solyc10g018160.2' => 'sly', 'Solyc10g084820.2' => 'sly', 'Solyc10g086565.2' => 'sly', 'Sopen01g037030' => 'spe', 'Sopen05g027920' => 'spe', 'Sopen05g034070' => 'spe', 'Sopen10g007260' => 'spe', 'Sopen10g034260' => 'spe', 'Sopen10g035950' => 'spe', 'Sp3g07710' => 'spa', 'Sp4g27420' => 'spa', 'Sp5g02450' => 'spa', 'Sp6g01280' => 'spa', 'Sp6g38480' => 'spa', 'Sp7g20780' => 'spa', 'TAR374G1413' => 'tar', 'TAR623G1777' => 'tar', 'TAR629G2370' => 'tar', 'TAR633G1759' => 'tar', 'TAR636G3387' => 'tar', 'THA.LOC104802447' => 'tha', 'THA.LOC104813916' => 'tha', 'THA.LOC104816423' => 'tha', 'THA.LOC104817246' => 'tha', 'THA.LOC104825895' => 'tha', 'Thecc.01G335200' => 'tca', 'Thecc.01G377400' => 'tca', 'Thecc.03G262200' => 'tca', 'Thecc.05G036800' => 'tca', 'Thecc.10G080500' => 'tca', 'Thecc.10G080800' => 'tca', 'Thhalv10001560m.g' => 'esa', 'Thhalv10006120m.g' => 'esa', 'Thhalv10014375m.g' => 'esa', 'Thhalv10021264m.g' => 'esa', 'Thhalv10028856m.g' => 'esa', 'TPR.G1914' => 'tpr', 'TPR.G4757' => 'tpr', 'TPR.G5595' => 'tpr', 'TWI14G0952' => 'twi', 'TWI14G1307' => 'twi', 'TWI38G2143' => 'twi', 'TWI59G0826' => 'twi', 'TWI77G0527' => 'twi', 'TWI81G0150' => 'twi', 'unitig_21.g21018' => 'ugi', 'unitig_26.g9725' => 'ugi', 'unitig_744.g24653' => 'ugi', 'unitig_749.g13778' => 'ugi', 'unitig_899.g15035' => 'ugi', 'vmacro04296' => 'vma', 'vmacro04852' => 'vma', 'vmacro13404' => 'vma', 'vmacro20169' => 'vma', 'vmacro21014' => 'vma', 'VMungo0331G0237' => 'vmu', 'VMungo0331G0706' => 'vmu', 'VMungo0331G1361' => 'vmu', 'VMungo0331G1489' => 'vmu', 'VMungo0540G1037' => 'vmu', 'VMungo0720G2487' => 'vmu', 'VMungo0720G2721' => 'vmu', 'Zm00001eb086860' => 'zma', 'Zm00001eb104760' => 'zma', 'Zm00001eb148220' => 'zma', 'Zm00001eb259030' => 'zma', 'Zm00001eb289590' => 'zma', 'Zm00001eb420150' => 'zma' ) $gf_id = 'HOM05D000968' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000968' ) $data_identifier = 'HOM05D000968' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 19, 'bol' => (int) 9, 'bra' => (int) 12, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 5, 'ccan' => (int) 7, 'cde' => (int) 5, 'cfa' => (int) 8, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 4, 'dca' => (int) 5, 'din' => (int) 5, 'dzi' => (int) 12, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 25, 'fve' => (int) 5, 'gma' => (int) 9, 'ghi' => (int) 18, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 7, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 5, 'sun' => (int) 2, 'lal' => (int) 9, 'lja' => (int) 5, 'lonja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 9, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 2, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 3, 'stu' => (int) 6, 'pvu' => (int) 4, 'ptr' => (int) 8, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 3, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 1, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 5, 'sas' => (int) 5, 'shi' => (int) 6, 'smo' => (int) 6, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 3, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420150' $species_info = array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ) $local_species = 'tpr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000968', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p31690' => 'bna', 'A03p36040' => 'bna', 'A03p53730' => 'bna', 'A04p01410' => 'bna', 'A05p05420' => 'bna', 'A05p39630' => 'bna', 'A05p39640' => 'bna', 'A09p00970' => 'bna', 'A09p53060' => 'bna', 'A10p31890' => 'bna', 'Aa31LG10G15040' => 'aar', 'Aa31LG1G21090' => 'aar', 'Aa31LG1G26900' => 'aar', 'Aa31LG3G1820' => 'aar', 'Aa31LG5G1100' => 'aar', 'Aa31LG6G4740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2265' => 'aag', 'Actinidia07998' => 'ach', 'Actinidia11266' => 'ach', 'Actinidia12682' => 'ach', 'Actinidia26479' => 'ach', 'Actinidia31406' => 'ach', 'Actinidia32437' => 'ach', 'Actinidia38862' => 'ach', 'Ah.05g174230' => 'amhyb', 'Ah.05g179070' => 'amhyb', 'Ah.05g179090' => 'amhyb', 'Ah.12g059950' => 'amhyb', 'AL3G20480' => 'aly', 'AL4G44520' => 'aly', 'AL5G43110' => 'aly', 'AL6G13890' => 'aly', 'AL6G52620' => 'aly', 'AL7G30830' => 'aly', 'Aqoxy1G00899' => 'aox', 'Aqoxy5G04333' => 'aox', 'Aqoxy7G00641' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3IZ0NN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4EF6AW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W9P8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79GA3M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C43NQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFCU6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G95YVJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCHK29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LU1UG8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX91RN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGB4B1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8DA0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9H7JI' => 'arhy', 'AT3G09320' => 'ath', 'AT3G60800' => 'ath', 'AT4G00840' => 'ath', 'AT4G22750' => 'ath', 'AT5G04270' => 'ath', 'ATR0090G003' => 'atr', 'ATR0559G349' => 'atr', 'ATR0680G261' => 'atr', 'ATR0810G048' => 'atr', 'Atru.chr12.831' => 'acertr', 'Atru.chr5.303' => 'acertr', 'Atru.chr5.748' => 'acertr', 'Atru.chr8.1999' => 'acertr', 'Atru.chr9.1436' => 'acertr', 'AUR62004211' => 'cqu', 'AUR62004548' => 'cqu', 'AUR62013637' => 'cqu', 'AUR62022662' => 'cqu', 'AUR62025777' => 'cqu', 'AUR62042386' => 'cqu', 'BcaB01g02310' => 'bca', 'BcaB01g06062' => 'bca', 'BcaB02g08975' => 'bca', 'BcaB02g08980' => 'bca', 'BcaC01g04228' => 'bca', 'BcaC01g06830' => 'bca', 'BcaC02g10186' => 'bca', 'BcaC02g12214' => 'bca', 'BcaC04g24101' => 'bca', 'BcaC05g29520' => 'bca', 'BcaC05g29661' => 'bca', 'BcaC06g32130' => 'bca', 'BcaC06g32131' => 'bca', 'BcaC07g40601' => 'bca', 'BcaC07g42641' => 'bca', 'BcaNung01038' => 'bca', 'BcaNung01676' => 'bca', 'BcaNung02480' => 'bca', 'BcaNung07376' => 'bca', 'BolC3t16146H' => 'bol', 'BolC3t16637H' => 'bol', 'BolC4t22257H' => 'bol', 'BolC4t24728H' => 'bol', 'BolC5t34517H' => 'bol', 'BolC7t45703H' => 'bol', 'BolC8t51166H' => 'bol', 'BolC9t53038H' => 'bol', 'BolC9t60000H' => 'bol', 'BraA01t01345Z' => 'bra', 'BraA01t01346Z' => 'bra', 'BraA01t01348Z' => 'bra', 'BraA03t12347Z' => 'bra', 'BraA03t12775Z' => 'bra', 'BraA03t14439Z' => 'bra', 'BraA04t15860Z' => 'bra', 'BraA05t19511Z' => 'bra', 'BraA05t22746Z' => 'bra', 'BraA09t35767Z' => 'bra', 'BraA09t40732Z' => 'bra', 'BraA10t45233Z' => 'bra', 'C03p38720' => 'bna', 'C03p43680' => 'bna', 'C04p06350' => 'bna', 'C04p31800' => 'bna', 'C05p58680' => 'bna', 'C07p52110' => 'bna', 'C08p35760' => 'bna', 'C09p01050' => 'bna', 'C09p72600' => 'bna', 'CAN.G106.2' => 'can', 'CAN.G1482.1' => 'can', 'CAN.G324.12' => 'can', 'CAN.G388.20' => 'can', 'CAN.G412.7' => 'can', 'CAN.G694.32' => 'can', 'CAN.G92.12' => 'can', 'CANSAT11G2353' => 'cansat', 'CANSAT21G1398' => 'cansat', 'CANSAT56G2456' => 'cansat', 'CANSAT56G3031' => 'cansat', 'CANSAT56G4539' => 'cansat', 'CARHR083680' => 'chi', 'CARHR171190' => 'chi', 'CARHR209010' => 'chi', 'CARHR229680' => 'chi', 'CARHR249490' => 'chi', 'Carub.0003s0844' => 'cru', 'Carub.0005s2755' => 'cru', 'Carub.0006s0322' => 'cru', 'Carub.0006s3586' => 'cru', 'Carub.0007s1855' => 'cru', 'Ca_07808_v3' => 'car', 'Ca_09535_v3' => 'car', 'Ca_10548_v3' => 'car', 'Ca_19913_v3' => 'car', 'Ca_19916_v3' => 'car', 'Ca_19975_v3' => 'car', 'CBR_g22876' => 'cbr', 'CBR_g22879' => 'cbr', 'CBR_g38491' => 'cbr', 'CBR_g54185' => 'cbr', 'CBR_g54190' => 'cbr', 'Cc02_g11020' => 'ccan', 'Cc02_g23920' => 'ccan', 'Cc02_g39860' => 'ccan', 'Cc02_g39870' => 'ccan', 'Cc03_g06760' => 'ccan', 'Cc06_g02450' => 'ccan', 'Cc09_g09450' => 'ccan', 'CDE02G1959' => 'cde', 'CDE04G0600' => 'cde', 'CDE07G1996' => 'cde', 'CDE07G2078' => 'cde', 'CDE11G0611' => 'cde', 'Cfa001683' => 'cfa', 'Cfa001734' => 'cfa', 'Cfa001737' => 'cfa', 'Cfa003751' => 'cfa', 'Cfa012019' => 'cfa', 'Cfa017353' => 'cfa', 'Cfa017732' => 'cfa', 'Cfa022464' => 'cfa', 'Ciclev10012400m.g' => 'ccl', 'Ciclev10021242m.g' => 'ccl', 'Ciclev10021302m.g' => 'ccl', 'Ciclev10021463m.g' => 'ccl', 'Ciclev10032359m.g' => 'ccl', 'CiPaw.01G081000' => 'cil', 'CiPaw.01G262500' => 'cil', 'CiPaw.01G269800' => 'cil', 'CiPaw.02G168400' => 'cil', 'CiPaw.05G119500' => 'cil', 'CiPaw.11G147300' => 'cil', 'ClCG01G003630' => 'cla', 'ClCG05G000510' => 'cla', 'ClCG05G002300' => 'cla', 'ClCG08G007650' => 'cla', 'ClCG10G021250' => 'cla', 'COL.COLO4_06218' => 'col', 'COL.COLO4_12538' => 'col', 'COL.COLO4_14775' => 'col', 'COL.COLO4_23875' => 'col', 'Cpa.g.sc141.16' => 'cpa', 'Cpa.g.sc169.16' => 'cpa', 'Cpa.g.sc244.4' => 'cpa', 'Cpa.g.sc244.5' => 'cpa', 'Cpa.g.sc29.87' => 'cpa', 'Cpa.g.sc53.115' => 'cpa', 'Cre03.g207502' => 'cre', 'Cre06.g277000' => 'cre', 'Cre09.g394050' => 'cre', 'CsaV3_3G007680' => 'csa', 'CsaV3_3G009710' => 'csa', 'CsaV3_3G034790' => 'csa', 'CsaV3_5G003750' => 'csa', 'CsaV3_6G036620' => 'csa', 'CSS0002288' => 'camsi', 'CSS0011250' => 'camsi', 'CSS0021619' => 'camsi', 'CSS0046701' => 'camsi', 'DCAR_006420' => 'dca', 'DCAR_006865' => 'dca', 'DCAR_008558' => 'dca', 'DCAR_028754' => 'dca', 'DCAR_028755' => 'dca', 'Dinv31218' => 'din', 'Dinv32371' => 'din', 'Dinv34250' => 'din', 'Dinv37156' => 'din', 'Dinv43704' => 'din', 'Duzib093G1811' => 'dzi', 'Duzib106G1622' => 'dzi', 'Duzib114G0504' => 'dzi', 'Duzib128G0338' => 'dzi', 'Duzib128G1577' => 'dzi', 'Duzib133G0104' => 'dzi', 'Duzib133G1080' => 'dzi', 'Duzib138G0324' => 'dzi', 'Duzib138G0394' => 'dzi', 'Duzib205G0122' => 'dzi', 'Duzib268G1020' => 'dzi', 'Duzib268G1359' => 'dzi', 'ECA232G3929' => 'eca', 'ECA236G2210' => 'eca', 'ECA236G2287' => 'eca', 'ECA240G4568' => 'eca', 'ECA247G0894' => 'eca', 'EL10Ac1g00200' => 'bvu', 'EL10Ac1g00886' => 'bvu', 'EL10As1g23091' => 'bvu', 'EL10As1g23092' => 'bvu', 'Eucgr.A01284' => 'egr', 'Eucgr.A01285' => 'egr', 'Eucgr.D02456' => 'egr', 'Eucgr.E00018' => 'egr', 'Eucgr.E01439' => 'egr', 'Eucgr.G02859' => 'egr', 'FAN01G0168' => 'fan', 'FAN01G0453' => 'fan', 'FAN01G2761' => 'fan', 'FAN02G1239' => 'fan', 'FAN03G0645' => 'fan', 'FAN03G2707' => 'fan', 'FAN03G2978' => 'fan', 'FAN04G0227' => 'fan', 'FAN06G0091' => 'fan', 'FAN06G1418' => 'fan', 'FAN06G1512' => 'fan', 'FAN06G1986' => 'fan', 'FAN06G2905' => 'fan', 'FAN06G4325' => 'fan', 'FAN08G0033' => 'fan', 'FAN09G0642' => 'fan', 'FAN10G1763' => 'fan', 'FAN10G2026' => 'fan', 'FAN10G2513' => 'fan', 'FAN10G3402' => 'fan', 'FAN10G3564' => 'fan', 'FAN10G3987' => 'fan', 'FAN13G1490' => 'fan', 'FAN14G5857' => 'fan', 'FAN18G1188' => 'fan', 'FvH4_5g00750' => 'fve', 'FvH4_6g13410' => 'fve', 'FvH4_7g11740' => 'fve', 'FvH4_7g17410' => 'fve', 'FvH4_7g18860' => 'fve', 'Glyma.01G099100' => 'gma', 'Glyma.01G142300' => 'gma', 'Glyma.03G025500' => 'gma', 'Glyma.03G069700' => 'gma', 'Glyma.03G260000' => 'gma', 'Glyma.09G269800' => 'gma', 'Glyma.10G208700' => 'gma', 'Glyma.18G220400' => 'gma', 'Glyma.20G182000' => 'gma', 'Gohir.A01G221726' => 'ghi', 'Gohir.A07G134600' => 'ghi', 'Gohir.A07G146000' => 'ghi', 'Gohir.A08G173900' => 'ghi', 'Gohir.A09G194900' => 'ghi', 'Gohir.A10G204100' => 'ghi', 'Gohir.A11G080600' => 'ghi', 'Gohir.A11G327500' => 'ghi', 'Gohir.A12G101800' => 'ghi', 'Gohir.D01G211200' => 'ghi', 'Gohir.D07G139200' => 'ghi', 'Gohir.D07G152100' => 'ghi', 'Gohir.D08G192600' => 'ghi', 'Gohir.D09G189200' => 'ghi', 'Gohir.D10G212000' => 'ghi', 'Gohir.D11G085200' => 'ghi', 'Gohir.D11G346400' => 'ghi', 'Gohir.D12G104800' => 'ghi', 'Gorai.001G151300' => 'gra', 'Gorai.001G174100' => 'gra', 'Gorai.002G257000' => 'gra', 'Gorai.004G202600' => 'gra', 'Gorai.007G090900' => 'gra', 'Gorai.007G376700' => 'gra', 'Gorai.008G114100' => 'gra', 'Gorai.011G237900' => 'gra', 'GSVIVG01005450001' => 'vvi', 'GSVIVG01016232001' => 'vvi', 'GSVIVG01026157001' => 'vvi', 'GSVIVG01027419001' => 'vvi', 'GSVIVG01027631001' => 'vvi', 'GSVIVG01034143001' => 'vvi', 'HanXRQChr03g0093921' => 'han', 'HanXRQChr04g0120001' => 'han', 'HanXRQChr04g0122561' => 'han', 'HanXRQChr09g0246851' => 'han', 'HanXRQChr10g0293311' => 'han', 'HanXRQChr13g0425231' => 'han', 'HanXRQChr16g0532571' => 'han', 'Haze_09050' => 'cav', 'Haze_15715' => 'cav', 'Haze_15716' => 'cav', 'Haze_16803' => 'cav', 'Haze_16850' => 'cav', 'Hma1.2p1_0301F.1_g118655' => 'hma', 'Hma1.2p1_0309F.1_g120590' => 'hma', 'Hma1.2p1_0936F.1_g238900' => 'hma', 'Hma1.2p1_3552F.1_g336740' => 'hma', 'HPP92_003520' => 'vpl', 'HPP92_006628' => 'vpl', 'HPP92_006645' => 'vpl', 'HPP92_014669' => 'vpl', 'HPP92_015077' => 'vpl', 'Hund16742' => 'sun', 'Hund17022' => 'sun', 'Lalb_Chr02g0152131' => 'lal', 'Lalb_Chr05g0225371' => 'lal', 'Lalb_Chr07g0189841' => 'lal', 'Lalb_Chr07g0192961' => 'lal', 'Lalb_Chr12g0208221' => 'lal', 'Lalb_Chr13g0291211' => 'lal', 'Lalb_Chr13g0291781' => 'lal', 'Lalb_Chr18g0044651' => 'lal', 'Lalb_Chr21g0313731' => 'lal', 'Lj1g0022533' => 'lja', 'Lj2A18T50' => 'lonja', 'Lj2A92G93' => 'lonja', 'Lj3A965T73' => 'lonja', 'Lj3g0000673' => 'lja', 'Lj3g0002666' => 'lja', 'Lj4g0016985' => 'lja', 'Lj5g0003625' => 'lja', 'Lj7A529G36' => 'lonja', 'Lj9A569T49' => 'lonja', 'Lj9A604T63' => 'lonja', 'Lsat_1_v5_gn_3_132060' => 'lsa', 'Lsat_1_v5_gn_4_68941' => 'lsa', 'Lsat_1_v5_gn_5_95580' => 'lsa', 'Lsat_1_v5_gn_7_161' => 'lsa', 'Lsat_1_v5_gn_7_7041' => 'lsa', 'Lsat_1_v5_gn_9_33481' => 'lsa', 'Lsat_1_v5_gn_9_68260' => 'lsa', 'Manes.01G073100' => 'mes', 'Manes.01G266300' => 'mes', 'Manes.02G033300' => 'mes', 'Manes.05G017900' => 'mes', 'Manes.05G046100' => 'mes', 'Manes.08G080900' => 'mes', 'Manes.10G049400' => 'mes', 'Mapoly0009s0186' => 'mpo', 'Mapoly0036s0118' => 'mpo', 'Mapoly0101s0046' => 'mpo', 'MBI04_g30218_MAGBIO' => 'mbi', 'MBI04_g35564_MAGBIO' => 'mbi', 'MBI12_g34011_MAGBIO' => 'mbi', 'MBI14_g04655_MAGBIO' => 'mbi', 'MCO07G653' => 'mco', 'MCO10G173' => 'mco', 'MD01G1087100' => 'mdo', 'MD01G1104200' => 'mdo', 'MD02G1205100' => 'mdo', 'MD04G1079200' => 'mdo', 'MD04G1131400' => 'mdo', 'MD07G1121600' => 'mdo', 'MD07G1157300' => 'mdo', 'MD07G1171000' => 'mdo', 'MD12G1144500' => 'mdo', 'Medtr1g094610' => 'mtr', 'Medtr4g021795' => 'mtr', 'Medtr4g023760' => 'mtr', 'Medtr7g118050' => 'mtr', 'MELO3C005582.2' => 'cme', 'MELO3C005989.2' => 'cme', 'MELO3C006192.2' => 'cme', 'MELO3C009248.2' => 'cme', 'MELO3C019817.2' => 'cme', 'Migut.B01625' => 'egut', 'Migut.B01915' => 'egut', 'Migut.F01721' => 'egut', 'Migut.J00314' => 'egut', 'MSTRG.20742' => 'ama', 'MSTRG.8134' => 'ama', 'Nitab4.5_0000096g0010' => 'nta', 'Nitab4.5_0000202g0030' => 'nta', 'Nitab4.5_0000216g0370' => 'nta', 'Nitab4.5_0000457g0230' => 'nta', 'Nitab4.5_0001702g0170' => 'nta', 'Nitab4.5_0003607g0010' => 'nta', 'Nitab4.5_0004917g0020' => 'nta', 'Nitab4.5_0007059g0010' => 'nta', 'Nitab4.5_0007184g0010' => 'nta', 'Nitab4.5_0007346g0020' => 'nta', 'Nn1g00410' => 'nnu', 'Nn1g01252' => 'nnu', 'Nn2g11168' => 'nnu', 'Nn2g13403' => 'nnu', 'Nn2g13760' => 'nnu', 'Nn4g26380' => 'nnu', 'Oeu000806.2' => 'oeu', 'Oeu005788.1' => 'oeu', 'Oeu006900.3' => 'oeu', 'Oeu007797.1' => 'oeu', 'Oeu011932.1' => 'oeu', 'Oeu022739.1' => 'oeu', 'Oeu037918.1' => 'oeu', 'Oeu055490.2' => 'oeu', 'Os01g0844400' => 'osa', 'Os02g0819100' => 'osa', 'Os03g0804300' => 'osa', 'Os05g0458000' => 'osa', 'Os07g0467800' => 'osa', 'Os12g0602200' => 'osa', 'Peaxi162Scf00013g03444' => 'pax', 'Peaxi162Scf00094g01120' => 'pax', 'Peaxi162Scf00191g01211' => 'pax', 'Peaxi162Scf00238g01110' => 'pax', 'Peaxi162Scf00330g00719' => 'pax', 'Peaxi162Scf00627g00018' => 'pax', 'PGR031G2686' => 'pgr', 'PGR042G0809' => 'pgr', 'PGR142G0193' => 'pgr', 'PGSC0003DMG400011066' => 'stu', 'PGSC0003DMG400012041' => 'stu', 'PGSC0003DMG400013678' => 'stu', 'PGSC0003DMG400023477' => 'stu', 'PGSC0003DMG400025956' => 'stu', 'PGSC0003DMG401019151' => 'stu', 'Phvul.006G116400' => 'pvu', 'Phvul.007G097300' => 'pvu', 'Phvul.010G015000' => 'pvu', 'Phvul.010G083900' => 'pvu', 'Potri.001G117100' => 'ptr', 'Potri.002G147300' => 'ptr', 'Potri.003G115600' => 'ptr', 'Potri.006G087400' => 'ptr', 'Potri.010G226100' => 'ptr', 'Potri.014G069200' => 'ptr', 'Potri.014G104000' => 'ptr', 'Potri.016G100200' => 'ptr', 'Pp3c10_20450' => 'ppa', 'Pp3c1_42400' => 'ppa', 'Pp3c3_24390' => 'ppa', 'Pp3c3_2860' => 'ppa', 'PRCOL_00003193' => 'pco', 'Prupe.2G144500' => 'ppe', 'Prupe.2G195700' => 'ppe', 'Prupe.2G209800' => 'ppe', 'Prupe.5G080000' => 'ppe', 'Prupe.6G257900' => 'ppe', 'Psat3g001160' => 'psa', 'Psat6g181880' => 'psa', 'Psat7g233720' => 'psa', 'PSO063G7587' => 'pso', 'PSO339G2145' => 'pso', 'PSO339G3369' => 'pso', 'PSO478G2747' => 'pso', 'PSO513G0140' => 'pso', 'PSO782G1614' => 'pso', 'PSO782G4889' => 'pso', 'PSO782G5485' => 'pso', 'PSO801G0241' => 'pso', 'QL07p048854' => 'qlo', 'QL08p046745' => 'qlo', 'QL08p052606' => 'qlo', 'QL08p053414' => 'qlo', 'QL08p054868' => 'qlo', 'RcHm_v2.0_Chr1g0350251' => 'rch', 'RcHm_v2.0_Chr1g0360851' => 'rch', 'RcHm_v2.0_Chr1g0362791' => 'rch', 'RcHm_v2.0_Chr3g0466281' => 'rch', 'RcHm_v2.0_Chr7g0201481' => 'rch', 'Rhsim01G0148600' => 'rsi', 'Rhsim05G0194400' => 'rsi', 'Rhsim07G0000700' => 'rsi', 'Rhsim07G0000800' => 'rsi', 'Rhsim07G0027900' => 'rsi', 'Rhsim09G0149500' => 'rsi', 'RhsimUnG0186900' => 'rsi', 'Sabra01G0089900' => 'sbr', 'Sabra02G0114700' => 'sbr', 'Sabra02G0116300' => 'sbr', 'Sabra03G0080100' => 'sbr', 'Sabra08G0024300' => 'sbr', 'Sabra10G0174300' => 'sbr', 'Sabra14G0048900' => 'sbr', 'Sabra14G0076500' => 'sbr', 'SalBow5G2513' => 'sbo', 'Sc01g0002300' => 'sci', 'Sc01g0004450' => 'sci', 'Sc06g0001680' => 'sci', 'Sc23g0003580' => 'sci', 'Sed0000913' => 'sed', 'Sed0001655' => 'sed', 'Sed0007745' => 'sed', 'Sed0010951' => 'sed', 'Sed0017599' => 'sed', 'Sed0021405' => 'sed', 'Sed0022810' => 'sed', 'SEGI_07099' => 'sgi', 'SEGI_11931' => 'sgi', 'SEGI_13187' => 'sgi', 'SEGI_29958' => 'sgi', 'SEGI_36351' => 'sgi', 'SGA_v2.0_scaffold126G33770' => 'sas', 'SGA_v2.0_scaffold153G37003' => 'sas', 'SGA_v2.0_scaffold2G01359' => 'sas', 'SGA_v2.0_scaffold5G03064' => 'sas', 'SGA_v2.0_scaffold95G28903' => 'sas', 'SHI12701' => 'shi', 'SHI26410' => 'shi', 'SHI38997' => 'shi', 'SHI53759' => 'shi', 'SHI53886' => 'shi', 'SHI54714' => 'shi', 'SMO011G0041' => 'smo', 'SMO146G0251' => 'smo', 'SMO160G0004' => 'smo', 'SMO174G0057' => 'smo', 'SMO244G0089' => 'smo', 'SMO296G0011' => 'smo', 'Solyc01g091280.3' => 'sly', 'Solyc05g047610.3' => 'sly', 'Solyc05g047640.3' => 'sly', 'Solyc05g055630.3' => 'sly', 'Solyc10g018160.2' => 'sly', 'Solyc10g084820.2' => 'sly', 'Solyc10g086565.2' => 'sly', 'Sopen01g037030' => 'spe', 'Sopen05g027920' => 'spe', 'Sopen05g034070' => 'spe', 'Sopen10g007260' => 'spe', 'Sopen10g034260' => 'spe', 'Sopen10g035950' => 'spe', 'Sp3g07710' => 'spa', 'Sp4g27420' => 'spa', 'Sp5g02450' => 'spa', 'Sp6g01280' => 'spa', 'Sp6g38480' => 'spa', 'Sp7g20780' => 'spa', 'TAR374G1413' => 'tar', 'TAR623G1777' => 'tar', 'TAR629G2370' => 'tar', 'TAR633G1759' => 'tar', 'TAR636G3387' => 'tar', 'THA.LOC104802447' => 'tha', 'THA.LOC104813916' => 'tha', 'THA.LOC104816423' => 'tha', 'THA.LOC104817246' => 'tha', 'THA.LOC104825895' => 'tha', 'Thecc.01G335200' => 'tca', 'Thecc.01G377400' => 'tca', 'Thecc.03G262200' => 'tca', 'Thecc.05G036800' => 'tca', 'Thecc.10G080500' => 'tca', 'Thecc.10G080800' => 'tca', 'Thhalv10001560m.g' => 'esa', 'Thhalv10006120m.g' => 'esa', 'Thhalv10014375m.g' => 'esa', 'Thhalv10021264m.g' => 'esa', 'Thhalv10028856m.g' => 'esa', 'TPR.G1914' => 'tpr', 'TPR.G4757' => 'tpr', 'TPR.G5595' => 'tpr', 'TWI14G0952' => 'twi', 'TWI14G1307' => 'twi', 'TWI38G2143' => 'twi', 'TWI59G0826' => 'twi', 'TWI77G0527' => 'twi', 'TWI81G0150' => 'twi', 'unitig_21.g21018' => 'ugi', 'unitig_26.g9725' => 'ugi', 'unitig_744.g24653' => 'ugi', 'unitig_749.g13778' => 'ugi', 'unitig_899.g15035' => 'ugi', 'vmacro04296' => 'vma', 'vmacro04852' => 'vma', 'vmacro13404' => 'vma', 'vmacro20169' => 'vma', 'vmacro21014' => 'vma', 'VMungo0331G0237' => 'vmu', 'VMungo0331G0706' => 'vmu', 'VMungo0331G1361' => 'vmu', 'VMungo0331G1489' => 'vmu', 'VMungo0540G1037' => 'vmu', 'VMungo0720G2487' => 'vmu', 'VMungo0720G2721' => 'vmu', 'Zm00001eb086860' => 'zma', 'Zm00001eb104760' => 'zma', 'Zm00001eb148220' => 'zma', 'Zm00001eb259030' => 'zma', 'Zm00001eb289590' => 'zma', 'Zm00001eb420150' => 'zma' ), 'gf_id' => 'HOM05D000968', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000968' ), 'data_identifier' => 'HOM05D000968', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000968', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p31690' => 'bna', 'A03p36040' => 'bna', 'A03p53730' => 'bna', 'A04p01410' => 'bna', 'A05p05420' => 'bna', 'A05p39630' => 'bna', 'A05p39640' => 'bna', 'A09p00970' => 'bna', 'A09p53060' => 'bna', 'A10p31890' => 'bna', 'Aa31LG10G15040' => 'aar', 'Aa31LG1G21090' => 'aar', 'Aa31LG1G26900' => 'aar', 'Aa31LG3G1820' => 'aar', 'Aa31LG5G1100' => 'aar', 'Aa31LG6G4740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2265' => 'aag', 'Actinidia07998' => 'ach', 'Actinidia11266' => 'ach', 'Actinidia12682' => 'ach', 'Actinidia26479' => 'ach', 'Actinidia31406' => 'ach', 'Actinidia32437' => 'ach', 'Actinidia38862' => 'ach', 'Ah.05g174230' => 'amhyb', 'Ah.05g179070' => 'amhyb', 'Ah.05g179090' => 'amhyb', 'Ah.12g059950' => 'amhyb', 'AL3G20480' => 'aly', 'AL4G44520' => 'aly', 'AL5G43110' => 'aly', 'AL6G13890' => 'aly', 'AL6G52620' => 'aly', 'AL7G30830' => 'aly', 'Aqoxy1G00899' => 'aox', 'Aqoxy5G04333' => 'aox', 'Aqoxy7G00641' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3IZ0NN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4EF6AW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W9P8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79GA3M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C43NQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFCU6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G95YVJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCHK29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LU1UG8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX91RN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGB4B1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8DA0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9H7JI' => 'arhy', 'AT3G09320' => 'ath', 'AT3G60800' => 'ath', 'AT4G00840' => 'ath', 'AT4G22750' => 'ath', 'AT5G04270' => 'ath', 'ATR0090G003' => 'atr', 'ATR0559G349' => 'atr', 'ATR0680G261' => 'atr', 'ATR0810G048' => 'atr', 'Atru.chr12.831' => 'acertr', 'Atru.chr5.303' => 'acertr', 'Atru.chr5.748' => 'acertr', 'Atru.chr8.1999' => 'acertr', 'Atru.chr9.1436' => 'acertr', 'AUR62004211' => 'cqu', 'AUR62004548' => 'cqu', 'AUR62013637' => 'cqu', 'AUR62022662' => 'cqu', 'AUR62025777' => 'cqu', 'AUR62042386' => 'cqu', 'BcaB01g02310' => 'bca', 'BcaB01g06062' => 'bca', 'BcaB02g08975' => 'bca', 'BcaB02g08980' => 'bca', 'BcaC01g04228' => 'bca', 'BcaC01g06830' => 'bca', 'BcaC02g10186' => 'bca', 'BcaC02g12214' => 'bca', 'BcaC04g24101' => 'bca', 'BcaC05g29520' => 'bca', 'BcaC05g29661' => 'bca', 'BcaC06g32130' => 'bca', 'BcaC06g32131' => 'bca', 'BcaC07g40601' => 'bca', 'BcaC07g42641' => 'bca', 'BcaNung01038' => 'bca', 'BcaNung01676' => 'bca', 'BcaNung02480' => 'bca', 'BcaNung07376' => 'bca', 'BolC3t16146H' => 'bol', 'BolC3t16637H' => 'bol', 'BolC4t22257H' => 'bol', 'BolC4t24728H' => 'bol', 'BolC5t34517H' => 'bol', 'BolC7t45703H' => 'bol', 'BolC8t51166H' => 'bol', 'BolC9t53038H' => 'bol', 'BolC9t60000H' => 'bol', 'BraA01t01345Z' => 'bra', 'BraA01t01346Z' => 'bra', 'BraA01t01348Z' => 'bra', 'BraA03t12347Z' => 'bra', 'BraA03t12775Z' => 'bra', 'BraA03t14439Z' => 'bra', 'BraA04t15860Z' => 'bra', 'BraA05t19511Z' => 'bra', 'BraA05t22746Z' => 'bra', 'BraA09t35767Z' => 'bra', 'BraA09t40732Z' => 'bra', 'BraA10t45233Z' => 'bra', 'C03p38720' => 'bna', 'C03p43680' => 'bna', 'C04p06350' => 'bna', 'C04p31800' => 'bna', 'C05p58680' => 'bna', 'C07p52110' => 'bna', 'C08p35760' => 'bna', 'C09p01050' => 'bna', 'C09p72600' => 'bna', 'CAN.G106.2' => 'can', 'CAN.G1482.1' => 'can', 'CAN.G324.12' => 'can', 'CAN.G388.20' => 'can', 'CAN.G412.7' => 'can', 'CAN.G694.32' => 'can', 'CAN.G92.12' => 'can', 'CANSAT11G2353' => 'cansat', 'CANSAT21G1398' => 'cansat', 'CANSAT56G2456' => 'cansat', 'CANSAT56G3031' => 'cansat', 'CANSAT56G4539' => 'cansat', 'CARHR083680' => 'chi', 'CARHR171190' => 'chi', 'CARHR209010' => 'chi', 'CARHR229680' => 'chi', 'CARHR249490' => 'chi', 'Carub.0003s0844' => 'cru', 'Carub.0005s2755' => 'cru', 'Carub.0006s0322' => 'cru', 'Carub.0006s3586' => 'cru', 'Carub.0007s1855' => 'cru', 'Ca_07808_v3' => 'car', 'Ca_09535_v3' => 'car', 'Ca_10548_v3' => 'car', 'Ca_19913_v3' => 'car', 'Ca_19916_v3' => 'car', 'Ca_19975_v3' => 'car', 'CBR_g22876' => 'cbr', 'CBR_g22879' => 'cbr', 'CBR_g38491' => 'cbr', 'CBR_g54185' => 'cbr', 'CBR_g54190' => 'cbr', 'Cc02_g11020' => 'ccan', 'Cc02_g23920' => 'ccan', 'Cc02_g39860' => 'ccan', 'Cc02_g39870' => 'ccan', 'Cc03_g06760' => 'ccan', 'Cc06_g02450' => 'ccan', 'Cc09_g09450' => 'ccan', 'CDE02G1959' => 'cde', 'CDE04G0600' => 'cde', 'CDE07G1996' => 'cde', 'CDE07G2078' => 'cde', 'CDE11G0611' => 'cde', 'Cfa001683' => 'cfa', 'Cfa001734' => 'cfa', 'Cfa001737' => 'cfa', 'Cfa003751' => 'cfa', 'Cfa012019' => 'cfa', 'Cfa017353' => 'cfa', 'Cfa017732' => 'cfa', 'Cfa022464' => 'cfa', 'Ciclev10012400m.g' => 'ccl', 'Ciclev10021242m.g' => 'ccl', 'Ciclev10021302m.g' => 'ccl', 'Ciclev10021463m.g' => 'ccl', 'Ciclev10032359m.g' => 'ccl', 'CiPaw.01G081000' => 'cil', 'CiPaw.01G262500' => 'cil', 'CiPaw.01G269800' => 'cil', 'CiPaw.02G168400' => 'cil', 'CiPaw.05G119500' => 'cil', 'CiPaw.11G147300' => 'cil', 'ClCG01G003630' => 'cla', 'ClCG05G000510' => 'cla', 'ClCG05G002300' => 'cla', 'ClCG08G007650' => 'cla', 'ClCG10G021250' => 'cla', 'COL.COLO4_06218' => 'col', 'COL.COLO4_12538' => 'col', 'COL.COLO4_14775' => 'col', 'COL.COLO4_23875' => 'col', 'Cpa.g.sc141.16' => 'cpa', 'Cpa.g.sc169.16' => 'cpa', 'Cpa.g.sc244.4' => 'cpa', 'Cpa.g.sc244.5' => 'cpa', 'Cpa.g.sc29.87' => 'cpa', 'Cpa.g.sc53.115' => 'cpa', 'Cre03.g207502' => 'cre', 'Cre06.g277000' => 'cre', 'Cre09.g394050' => 'cre', 'CsaV3_3G007680' => 'csa', 'CsaV3_3G009710' => 'csa', 'CsaV3_3G034790' => 'csa', 'CsaV3_5G003750' => 'csa', 'CsaV3_6G036620' => 'csa', 'CSS0002288' => 'camsi', 'CSS0011250' => 'camsi', 'CSS0021619' => 'camsi', 'CSS0046701' => 'camsi', 'DCAR_006420' => 'dca', 'DCAR_006865' => 'dca', 'DCAR_008558' => 'dca', 'DCAR_028754' => 'dca', 'DCAR_028755' => 'dca', 'Dinv31218' => 'din', 'Dinv32371' => 'din', 'Dinv34250' => 'din', 'Dinv37156' => 'din', 'Dinv43704' => 'din', 'Duzib093G1811' => 'dzi', 'Duzib106G1622' => 'dzi', 'Duzib114G0504' => 'dzi', 'Duzib128G0338' => 'dzi', 'Duzib128G1577' => 'dzi', 'Duzib133G0104' => 'dzi', 'Duzib133G1080' => 'dzi', 'Duzib138G0324' => 'dzi', 'Duzib138G0394' => 'dzi', 'Duzib205G0122' => 'dzi', 'Duzib268G1020' => 'dzi', 'Duzib268G1359' => 'dzi', 'ECA232G3929' => 'eca', 'ECA236G2210' => 'eca', 'ECA236G2287' => 'eca', 'ECA240G4568' => 'eca', 'ECA247G0894' => 'eca', 'EL10Ac1g00200' => 'bvu', 'EL10Ac1g00886' => 'bvu', 'EL10As1g23091' => 'bvu', 'EL10As1g23092' => 'bvu', 'Eucgr.A01284' => 'egr', 'Eucgr.A01285' => 'egr', 'Eucgr.D02456' => 'egr', 'Eucgr.E00018' => 'egr', 'Eucgr.E01439' => 'egr', 'Eucgr.G02859' => 'egr', 'FAN01G0168' => 'fan', 'FAN01G0453' => 'fan', 'FAN01G2761' => 'fan', 'FAN02G1239' => 'fan', 'FAN03G0645' => 'fan', 'FAN03G2707' => 'fan', 'FAN03G2978' => 'fan', 'FAN04G0227' => 'fan', 'FAN06G0091' => 'fan', 'FAN06G1418' => 'fan', 'FAN06G1512' => 'fan', 'FAN06G1986' => 'fan', 'FAN06G2905' => 'fan', 'FAN06G4325' => 'fan', 'FAN08G0033' => 'fan', 'FAN09G0642' => 'fan', 'FAN10G1763' => 'fan', 'FAN10G2026' => 'fan', 'FAN10G2513' => 'fan', 'FAN10G3402' => 'fan', 'FAN10G3564' => 'fan', 'FAN10G3987' => 'fan', 'FAN13G1490' => 'fan', 'FAN14G5857' => 'fan', 'FAN18G1188' => 'fan', 'FvH4_5g00750' => 'fve', 'FvH4_6g13410' => 'fve', 'FvH4_7g11740' => 'fve', 'FvH4_7g17410' => 'fve', 'FvH4_7g18860' => 'fve', 'Glyma.01G099100' => 'gma', 'Glyma.01G142300' => 'gma', 'Glyma.03G025500' => 'gma', 'Glyma.03G069700' => 'gma', 'Glyma.03G260000' => 'gma', 'Glyma.09G269800' => 'gma', 'Glyma.10G208700' => 'gma', 'Glyma.18G220400' => 'gma', 'Glyma.20G182000' => 'gma', 'Gohir.A01G221726' => 'ghi', 'Gohir.A07G134600' => 'ghi', 'Gohir.A07G146000' => 'ghi', 'Gohir.A08G173900' => 'ghi', 'Gohir.A09G194900' => 'ghi', 'Gohir.A10G204100' => 'ghi', 'Gohir.A11G080600' => 'ghi', 'Gohir.A11G327500' => 'ghi', 'Gohir.A12G101800' => 'ghi', 'Gohir.D01G211200' => 'ghi', 'Gohir.D07G139200' => 'ghi', 'Gohir.D07G152100' => 'ghi', 'Gohir.D08G192600' => 'ghi', 'Gohir.D09G189200' => 'ghi', 'Gohir.D10G212000' => 'ghi', 'Gohir.D11G085200' => 'ghi', 'Gohir.D11G346400' => 'ghi', 'Gohir.D12G104800' => 'ghi', 'Gorai.001G151300' => 'gra', 'Gorai.001G174100' => 'gra', 'Gorai.002G257000' => 'gra', 'Gorai.004G202600' => 'gra', 'Gorai.007G090900' => 'gra', 'Gorai.007G376700' => 'gra', 'Gorai.008G114100' => 'gra', 'Gorai.011G237900' => 'gra', 'GSVIVG01005450001' => 'vvi', 'GSVIVG01016232001' => 'vvi', 'GSVIVG01026157001' => 'vvi', 'GSVIVG01027419001' => 'vvi', 'GSVIVG01027631001' => 'vvi', 'GSVIVG01034143001' => 'vvi', 'HanXRQChr03g0093921' => 'han', 'HanXRQChr04g0120001' => 'han', 'HanXRQChr04g0122561' => 'han', 'HanXRQChr09g0246851' => 'han', 'HanXRQChr10g0293311' => 'han', 'HanXRQChr13g0425231' => 'han', 'HanXRQChr16g0532571' => 'han', 'Haze_09050' => 'cav', 'Haze_15715' => 'cav', 'Haze_15716' => 'cav', 'Haze_16803' => 'cav', 'Haze_16850' => 'cav', 'Hma1.2p1_0301F.1_g118655' => 'hma', 'Hma1.2p1_0309F.1_g120590' => 'hma', 'Hma1.2p1_0936F.1_g238900' => 'hma', 'Hma1.2p1_3552F.1_g336740' => 'hma', 'HPP92_003520' => 'vpl', 'HPP92_006628' => 'vpl', 'HPP92_006645' => 'vpl', 'HPP92_014669' => 'vpl', 'HPP92_015077' => 'vpl', 'Hund16742' => 'sun', 'Hund17022' => 'sun', 'Lalb_Chr02g0152131' => 'lal', 'Lalb_Chr05g0225371' => 'lal', 'Lalb_Chr07g0189841' => 'lal', 'Lalb_Chr07g0192961' => 'lal', 'Lalb_Chr12g0208221' => 'lal', 'Lalb_Chr13g0291211' => 'lal', 'Lalb_Chr13g0291781' => 'lal', 'Lalb_Chr18g0044651' => 'lal', 'Lalb_Chr21g0313731' => 'lal', 'Lj1g0022533' => 'lja', 'Lj2A18T50' => 'lonja', 'Lj2A92G93' => 'lonja', 'Lj3A965T73' => 'lonja', 'Lj3g0000673' => 'lja', 'Lj3g0002666' => 'lja', 'Lj4g0016985' => 'lja', 'Lj5g0003625' => 'lja', 'Lj7A529G36' => 'lonja', 'Lj9A569T49' => 'lonja', 'Lj9A604T63' => 'lonja', 'Lsat_1_v5_gn_3_132060' => 'lsa', 'Lsat_1_v5_gn_4_68941' => 'lsa', 'Lsat_1_v5_gn_5_95580' => 'lsa', 'Lsat_1_v5_gn_7_161' => 'lsa', 'Lsat_1_v5_gn_7_7041' => 'lsa', 'Lsat_1_v5_gn_9_33481' => 'lsa', 'Lsat_1_v5_gn_9_68260' => 'lsa', 'Manes.01G073100' => 'mes', 'Manes.01G266300' => 'mes', 'Manes.02G033300' => 'mes', 'Manes.05G017900' => 'mes', 'Manes.05G046100' => 'mes', 'Manes.08G080900' => 'mes', 'Manes.10G049400' => 'mes', 'Mapoly0009s0186' => 'mpo', 'Mapoly0036s0118' => 'mpo', 'Mapoly0101s0046' => 'mpo', 'MBI04_g30218_MAGBIO' => 'mbi', 'MBI04_g35564_MAGBIO' => 'mbi', 'MBI12_g34011_MAGBIO' => 'mbi', 'MBI14_g04655_MAGBIO' => 'mbi', 'MCO07G653' => 'mco', 'MCO10G173' => 'mco', 'MD01G1087100' => 'mdo', 'MD01G1104200' => 'mdo', 'MD02G1205100' => 'mdo', 'MD04G1079200' => 'mdo', 'MD04G1131400' => 'mdo', 'MD07G1121600' => 'mdo', 'MD07G1157300' => 'mdo', 'MD07G1171000' => 'mdo', 'MD12G1144500' => 'mdo', 'Medtr1g094610' => 'mtr', 'Medtr4g021795' => 'mtr', 'Medtr4g023760' => 'mtr', 'Medtr7g118050' => 'mtr', 'MELO3C005582.2' => 'cme', 'MELO3C005989.2' => 'cme', 'MELO3C006192.2' => 'cme', 'MELO3C009248.2' => 'cme', 'MELO3C019817.2' => 'cme', 'Migut.B01625' => 'egut', 'Migut.B01915' => 'egut', 'Migut.F01721' => 'egut', 'Migut.J00314' => 'egut', 'MSTRG.20742' => 'ama', 'MSTRG.8134' => 'ama', 'Nitab4.5_0000096g0010' => 'nta', 'Nitab4.5_0000202g0030' => 'nta', 'Nitab4.5_0000216g0370' => 'nta', 'Nitab4.5_0000457g0230' => 'nta', 'Nitab4.5_0001702g0170' => 'nta', 'Nitab4.5_0003607g0010' => 'nta', 'Nitab4.5_0004917g0020' => 'nta', 'Nitab4.5_0007059g0010' => 'nta', 'Nitab4.5_0007184g0010' => 'nta', 'Nitab4.5_0007346g0020' => 'nta', 'Nn1g00410' => 'nnu', 'Nn1g01252' => 'nnu', 'Nn2g11168' => 'nnu', 'Nn2g13403' => 'nnu', 'Nn2g13760' => 'nnu', 'Nn4g26380' => 'nnu', 'Oeu000806.2' => 'oeu', 'Oeu005788.1' => 'oeu', 'Oeu006900.3' => 'oeu', 'Oeu007797.1' => 'oeu', 'Oeu011932.1' => 'oeu', 'Oeu022739.1' => 'oeu', 'Oeu037918.1' => 'oeu', 'Oeu055490.2' => 'oeu', 'Os01g0844400' => 'osa', 'Os02g0819100' => 'osa', 'Os03g0804300' => 'osa', 'Os05g0458000' => 'osa', 'Os07g0467800' => 'osa', 'Os12g0602200' => 'osa', 'Peaxi162Scf00013g03444' => 'pax', 'Peaxi162Scf00094g01120' => 'pax', 'Peaxi162Scf00191g01211' => 'pax', 'Peaxi162Scf00238g01110' => 'pax', 'Peaxi162Scf00330g00719' => 'pax', 'Peaxi162Scf00627g00018' => 'pax', 'PGR031G2686' => 'pgr', 'PGR042G0809' => 'pgr', 'PGR142G0193' => 'pgr', 'PGSC0003DMG400011066' => 'stu', 'PGSC0003DMG400012041' => 'stu', 'PGSC0003DMG400013678' => 'stu', 'PGSC0003DMG400023477' => 'stu', 'PGSC0003DMG400025956' => 'stu', 'PGSC0003DMG401019151' => 'stu', 'Phvul.006G116400' => 'pvu', 'Phvul.007G097300' => 'pvu', 'Phvul.010G015000' => 'pvu', 'Phvul.010G083900' => 'pvu', 'Potri.001G117100' => 'ptr', 'Potri.002G147300' => 'ptr', 'Potri.003G115600' => 'ptr', 'Potri.006G087400' => 'ptr', 'Potri.010G226100' => 'ptr', 'Potri.014G069200' => 'ptr', 'Potri.014G104000' => 'ptr', 'Potri.016G100200' => 'ptr', 'Pp3c10_20450' => 'ppa', 'Pp3c1_42400' => 'ppa', 'Pp3c3_24390' => 'ppa', 'Pp3c3_2860' => 'ppa', 'PRCOL_00003193' => 'pco', 'Prupe.2G144500' => 'ppe', 'Prupe.2G195700' => 'ppe', 'Prupe.2G209800' => 'ppe', 'Prupe.5G080000' => 'ppe', 'Prupe.6G257900' => 'ppe', 'Psat3g001160' => 'psa', 'Psat6g181880' => 'psa', 'Psat7g233720' => 'psa', 'PSO063G7587' => 'pso', 'PSO339G2145' => 'pso', 'PSO339G3369' => 'pso', 'PSO478G2747' => 'pso', 'PSO513G0140' => 'pso', 'PSO782G1614' => 'pso', 'PSO782G4889' => 'pso', 'PSO782G5485' => 'pso', 'PSO801G0241' => 'pso', 'QL07p048854' => 'qlo', 'QL08p046745' => 'qlo', 'QL08p052606' => 'qlo', 'QL08p053414' => 'qlo', 'QL08p054868' => 'qlo', 'RcHm_v2.0_Chr1g0350251' => 'rch', 'RcHm_v2.0_Chr1g0360851' => 'rch', 'RcHm_v2.0_Chr1g0362791' => 'rch', 'RcHm_v2.0_Chr3g0466281' => 'rch', 'RcHm_v2.0_Chr7g0201481' => 'rch', 'Rhsim01G0148600' => 'rsi', 'Rhsim05G0194400' => 'rsi', 'Rhsim07G0000700' => 'rsi', 'Rhsim07G0000800' => 'rsi', 'Rhsim07G0027900' => 'rsi', 'Rhsim09G0149500' => 'rsi', 'RhsimUnG0186900' => 'rsi', 'Sabra01G0089900' => 'sbr', 'Sabra02G0114700' => 'sbr', 'Sabra02G0116300' => 'sbr', 'Sabra03G0080100' => 'sbr', 'Sabra08G0024300' => 'sbr', 'Sabra10G0174300' => 'sbr', 'Sabra14G0048900' => 'sbr', 'Sabra14G0076500' => 'sbr', 'SalBow5G2513' => 'sbo', 'Sc01g0002300' => 'sci', 'Sc01g0004450' => 'sci', 'Sc06g0001680' => 'sci', 'Sc23g0003580' => 'sci', 'Sed0000913' => 'sed', 'Sed0001655' => 'sed', 'Sed0007745' => 'sed', 'Sed0010951' => 'sed', 'Sed0017599' => 'sed', 'Sed0021405' => 'sed', 'Sed0022810' => 'sed', 'SEGI_07099' => 'sgi', 'SEGI_11931' => 'sgi', 'SEGI_13187' => 'sgi', 'SEGI_29958' => 'sgi', 'SEGI_36351' => 'sgi', 'SGA_v2.0_scaffold126G33770' => 'sas', 'SGA_v2.0_scaffold153G37003' => 'sas', 'SGA_v2.0_scaffold2G01359' => 'sas', 'SGA_v2.0_scaffold5G03064' => 'sas', 'SGA_v2.0_scaffold95G28903' => 'sas', 'SHI12701' => 'shi', 'SHI26410' => 'shi', 'SHI38997' => 'shi', 'SHI53759' => 'shi', 'SHI53886' => 'shi', 'SHI54714' => 'shi', 'SMO011G0041' => 'smo', 'SMO146G0251' => 'smo', 'SMO160G0004' => 'smo', 'SMO174G0057' => 'smo', 'SMO244G0089' => 'smo', 'SMO296G0011' => 'smo', 'Solyc01g091280.3' => 'sly', 'Solyc05g047610.3' => 'sly', 'Solyc05g047640.3' => 'sly', 'Solyc05g055630.3' => 'sly', 'Solyc10g018160.2' => 'sly', 'Solyc10g084820.2' => 'sly', 'Solyc10g086565.2' => 'sly', 'Sopen01g037030' => 'spe', 'Sopen05g027920' => 'spe', 'Sopen05g034070' => 'spe', 'Sopen10g007260' => 'spe', 'Sopen10g034260' => 'spe', 'Sopen10g035950' => 'spe', 'Sp3g07710' => 'spa', 'Sp4g27420' => 'spa', 'Sp5g02450' => 'spa', 'Sp6g01280' => 'spa', 'Sp6g38480' => 'spa', 'Sp7g20780' => 'spa', 'TAR374G1413' => 'tar', 'TAR623G1777' => 'tar', 'TAR629G2370' => 'tar', 'TAR633G1759' => 'tar', 'TAR636G3387' => 'tar', 'THA.LOC104802447' => 'tha', 'THA.LOC104813916' => 'tha', 'THA.LOC104816423' => 'tha', 'THA.LOC104817246' => 'tha', 'THA.LOC104825895' => 'tha', 'Thecc.01G335200' => 'tca', 'Thecc.01G377400' => 'tca', 'Thecc.03G262200' => 'tca', 'Thecc.05G036800' => 'tca', 'Thecc.10G080500' => 'tca', 'Thecc.10G080800' => 'tca', 'Thhalv10001560m.g' => 'esa', 'Thhalv10006120m.g' => 'esa', 'Thhalv10014375m.g' => 'esa', 'Thhalv10021264m.g' => 'esa', 'Thhalv10028856m.g' => 'esa', 'TPR.G1914' => 'tpr', 'TPR.G4757' => 'tpr', 'TPR.G5595' => 'tpr', 'TWI14G0952' => 'twi', 'TWI14G1307' => 'twi', 'TWI38G2143' => 'twi', 'TWI59G0826' => 'twi', 'TWI77G0527' => 'twi', 'TWI81G0150' => 'twi', 'unitig_21.g21018' => 'ugi', 'unitig_26.g9725' => 'ugi', 'unitig_744.g24653' => 'ugi', 'unitig_749.g13778' => 'ugi', 'unitig_899.g15035' => 'ugi', 'vmacro04296' => 'vma', 'vmacro04852' => 'vma', 'vmacro13404' => 'vma', 'vmacro20169' => 'vma', 'vmacro21014' => 'vma', 'VMungo0331G0237' => 'vmu', 'VMungo0331G0706' => 'vmu', 'VMungo0331G1361' => 'vmu', 'VMungo0331G1489' => 'vmu', 'VMungo0540G1037' => 'vmu', 'VMungo0720G2487' => 'vmu', 'VMungo0720G2721' => 'vmu', 'Zm00001eb086860' => 'zma', 'Zm00001eb104760' => 'zma', 'Zm00001eb148220' => 'zma', 'Zm00001eb259030' => 'zma', 'Zm00001eb289590' => 'zma', 'Zm00001eb420150' => 'zma' ) $gf_id = 'HOM05D000968' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000968' ) $data_identifier = 'HOM05D000968' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 19, 'bol' => (int) 9, 'bra' => (int) 12, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 5, 'ccan' => (int) 7, 'cde' => (int) 5, 'cfa' => (int) 8, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 4, 'dca' => (int) 5, 'din' => (int) 5, 'dzi' => (int) 12, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 25, 'fve' => (int) 5, 'gma' => (int) 9, 'ghi' => (int) 18, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 7, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 5, 'sun' => (int) 2, 'lal' => (int) 9, 'lja' => (int) 5, 'lonja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 9, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 2, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 3, 'stu' => (int) 6, 'pvu' => (int) 4, 'ptr' => (int) 8, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 3, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 1, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 5, 'sas' => (int) 5, 'shi' => (int) 6, 'smo' => (int) 6, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 3, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420150' $species_info = array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ) $local_species = 'twi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000968', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p31690' => 'bna', 'A03p36040' => 'bna', 'A03p53730' => 'bna', 'A04p01410' => 'bna', 'A05p05420' => 'bna', 'A05p39630' => 'bna', 'A05p39640' => 'bna', 'A09p00970' => 'bna', 'A09p53060' => 'bna', 'A10p31890' => 'bna', 'Aa31LG10G15040' => 'aar', 'Aa31LG1G21090' => 'aar', 'Aa31LG1G26900' => 'aar', 'Aa31LG3G1820' => 'aar', 'Aa31LG5G1100' => 'aar', 'Aa31LG6G4740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2265' => 'aag', 'Actinidia07998' => 'ach', 'Actinidia11266' => 'ach', 'Actinidia12682' => 'ach', 'Actinidia26479' => 'ach', 'Actinidia31406' => 'ach', 'Actinidia32437' => 'ach', 'Actinidia38862' => 'ach', 'Ah.05g174230' => 'amhyb', 'Ah.05g179070' => 'amhyb', 'Ah.05g179090' => 'amhyb', 'Ah.12g059950' => 'amhyb', 'AL3G20480' => 'aly', 'AL4G44520' => 'aly', 'AL5G43110' => 'aly', 'AL6G13890' => 'aly', 'AL6G52620' => 'aly', 'AL7G30830' => 'aly', 'Aqoxy1G00899' => 'aox', 'Aqoxy5G04333' => 'aox', 'Aqoxy7G00641' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3IZ0NN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4EF6AW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W9P8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79GA3M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C43NQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFCU6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G95YVJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCHK29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LU1UG8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX91RN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGB4B1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8DA0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9H7JI' => 'arhy', 'AT3G09320' => 'ath', 'AT3G60800' => 'ath', 'AT4G00840' => 'ath', 'AT4G22750' => 'ath', 'AT5G04270' => 'ath', 'ATR0090G003' => 'atr', 'ATR0559G349' => 'atr', 'ATR0680G261' => 'atr', 'ATR0810G048' => 'atr', 'Atru.chr12.831' => 'acertr', 'Atru.chr5.303' => 'acertr', 'Atru.chr5.748' => 'acertr', 'Atru.chr8.1999' => 'acertr', 'Atru.chr9.1436' => 'acertr', 'AUR62004211' => 'cqu', 'AUR62004548' => 'cqu', 'AUR62013637' => 'cqu', 'AUR62022662' => 'cqu', 'AUR62025777' => 'cqu', 'AUR62042386' => 'cqu', 'BcaB01g02310' => 'bca', 'BcaB01g06062' => 'bca', 'BcaB02g08975' => 'bca', 'BcaB02g08980' => 'bca', 'BcaC01g04228' => 'bca', 'BcaC01g06830' => 'bca', 'BcaC02g10186' => 'bca', 'BcaC02g12214' => 'bca', 'BcaC04g24101' => 'bca', 'BcaC05g29520' => 'bca', 'BcaC05g29661' => 'bca', 'BcaC06g32130' => 'bca', 'BcaC06g32131' => 'bca', 'BcaC07g40601' => 'bca', 'BcaC07g42641' => 'bca', 'BcaNung01038' => 'bca', 'BcaNung01676' => 'bca', 'BcaNung02480' => 'bca', 'BcaNung07376' => 'bca', 'BolC3t16146H' => 'bol', 'BolC3t16637H' => 'bol', 'BolC4t22257H' => 'bol', 'BolC4t24728H' => 'bol', 'BolC5t34517H' => 'bol', 'BolC7t45703H' => 'bol', 'BolC8t51166H' => 'bol', 'BolC9t53038H' => 'bol', 'BolC9t60000H' => 'bol', 'BraA01t01345Z' => 'bra', 'BraA01t01346Z' => 'bra', 'BraA01t01348Z' => 'bra', 'BraA03t12347Z' => 'bra', 'BraA03t12775Z' => 'bra', 'BraA03t14439Z' => 'bra', 'BraA04t15860Z' => 'bra', 'BraA05t19511Z' => 'bra', 'BraA05t22746Z' => 'bra', 'BraA09t35767Z' => 'bra', 'BraA09t40732Z' => 'bra', 'BraA10t45233Z' => 'bra', 'C03p38720' => 'bna', 'C03p43680' => 'bna', 'C04p06350' => 'bna', 'C04p31800' => 'bna', 'C05p58680' => 'bna', 'C07p52110' => 'bna', 'C08p35760' => 'bna', 'C09p01050' => 'bna', 'C09p72600' => 'bna', 'CAN.G106.2' => 'can', 'CAN.G1482.1' => 'can', 'CAN.G324.12' => 'can', 'CAN.G388.20' => 'can', 'CAN.G412.7' => 'can', 'CAN.G694.32' => 'can', 'CAN.G92.12' => 'can', 'CANSAT11G2353' => 'cansat', 'CANSAT21G1398' => 'cansat', 'CANSAT56G2456' => 'cansat', 'CANSAT56G3031' => 'cansat', 'CANSAT56G4539' => 'cansat', 'CARHR083680' => 'chi', 'CARHR171190' => 'chi', 'CARHR209010' => 'chi', 'CARHR229680' => 'chi', 'CARHR249490' => 'chi', 'Carub.0003s0844' => 'cru', 'Carub.0005s2755' => 'cru', 'Carub.0006s0322' => 'cru', 'Carub.0006s3586' => 'cru', 'Carub.0007s1855' => 'cru', 'Ca_07808_v3' => 'car', 'Ca_09535_v3' => 'car', 'Ca_10548_v3' => 'car', 'Ca_19913_v3' => 'car', 'Ca_19916_v3' => 'car', 'Ca_19975_v3' => 'car', 'CBR_g22876' => 'cbr', 'CBR_g22879' => 'cbr', 'CBR_g38491' => 'cbr', 'CBR_g54185' => 'cbr', 'CBR_g54190' => 'cbr', 'Cc02_g11020' => 'ccan', 'Cc02_g23920' => 'ccan', 'Cc02_g39860' => 'ccan', 'Cc02_g39870' => 'ccan', 'Cc03_g06760' => 'ccan', 'Cc06_g02450' => 'ccan', 'Cc09_g09450' => 'ccan', 'CDE02G1959' => 'cde', 'CDE04G0600' => 'cde', 'CDE07G1996' => 'cde', 'CDE07G2078' => 'cde', 'CDE11G0611' => 'cde', 'Cfa001683' => 'cfa', 'Cfa001734' => 'cfa', 'Cfa001737' => 'cfa', 'Cfa003751' => 'cfa', 'Cfa012019' => 'cfa', 'Cfa017353' => 'cfa', 'Cfa017732' => 'cfa', 'Cfa022464' => 'cfa', 'Ciclev10012400m.g' => 'ccl', 'Ciclev10021242m.g' => 'ccl', 'Ciclev10021302m.g' => 'ccl', 'Ciclev10021463m.g' => 'ccl', 'Ciclev10032359m.g' => 'ccl', 'CiPaw.01G081000' => 'cil', 'CiPaw.01G262500' => 'cil', 'CiPaw.01G269800' => 'cil', 'CiPaw.02G168400' => 'cil', 'CiPaw.05G119500' => 'cil', 'CiPaw.11G147300' => 'cil', 'ClCG01G003630' => 'cla', 'ClCG05G000510' => 'cla', 'ClCG05G002300' => 'cla', 'ClCG08G007650' => 'cla', 'ClCG10G021250' => 'cla', 'COL.COLO4_06218' => 'col', 'COL.COLO4_12538' => 'col', 'COL.COLO4_14775' => 'col', 'COL.COLO4_23875' => 'col', 'Cpa.g.sc141.16' => 'cpa', 'Cpa.g.sc169.16' => 'cpa', 'Cpa.g.sc244.4' => 'cpa', 'Cpa.g.sc244.5' => 'cpa', 'Cpa.g.sc29.87' => 'cpa', 'Cpa.g.sc53.115' => 'cpa', 'Cre03.g207502' => 'cre', 'Cre06.g277000' => 'cre', 'Cre09.g394050' => 'cre', 'CsaV3_3G007680' => 'csa', 'CsaV3_3G009710' => 'csa', 'CsaV3_3G034790' => 'csa', 'CsaV3_5G003750' => 'csa', 'CsaV3_6G036620' => 'csa', 'CSS0002288' => 'camsi', 'CSS0011250' => 'camsi', 'CSS0021619' => 'camsi', 'CSS0046701' => 'camsi', 'DCAR_006420' => 'dca', 'DCAR_006865' => 'dca', 'DCAR_008558' => 'dca', 'DCAR_028754' => 'dca', 'DCAR_028755' => 'dca', 'Dinv31218' => 'din', 'Dinv32371' => 'din', 'Dinv34250' => 'din', 'Dinv37156' => 'din', 'Dinv43704' => 'din', 'Duzib093G1811' => 'dzi', 'Duzib106G1622' => 'dzi', 'Duzib114G0504' => 'dzi', 'Duzib128G0338' => 'dzi', 'Duzib128G1577' => 'dzi', 'Duzib133G0104' => 'dzi', 'Duzib133G1080' => 'dzi', 'Duzib138G0324' => 'dzi', 'Duzib138G0394' => 'dzi', 'Duzib205G0122' => 'dzi', 'Duzib268G1020' => 'dzi', 'Duzib268G1359' => 'dzi', 'ECA232G3929' => 'eca', 'ECA236G2210' => 'eca', 'ECA236G2287' => 'eca', 'ECA240G4568' => 'eca', 'ECA247G0894' => 'eca', 'EL10Ac1g00200' => 'bvu', 'EL10Ac1g00886' => 'bvu', 'EL10As1g23091' => 'bvu', 'EL10As1g23092' => 'bvu', 'Eucgr.A01284' => 'egr', 'Eucgr.A01285' => 'egr', 'Eucgr.D02456' => 'egr', 'Eucgr.E00018' => 'egr', 'Eucgr.E01439' => 'egr', 'Eucgr.G02859' => 'egr', 'FAN01G0168' => 'fan', 'FAN01G0453' => 'fan', 'FAN01G2761' => 'fan', 'FAN02G1239' => 'fan', 'FAN03G0645' => 'fan', 'FAN03G2707' => 'fan', 'FAN03G2978' => 'fan', 'FAN04G0227' => 'fan', 'FAN06G0091' => 'fan', 'FAN06G1418' => 'fan', 'FAN06G1512' => 'fan', 'FAN06G1986' => 'fan', 'FAN06G2905' => 'fan', 'FAN06G4325' => 'fan', 'FAN08G0033' => 'fan', 'FAN09G0642' => 'fan', 'FAN10G1763' => 'fan', 'FAN10G2026' => 'fan', 'FAN10G2513' => 'fan', 'FAN10G3402' => 'fan', 'FAN10G3564' => 'fan', 'FAN10G3987' => 'fan', 'FAN13G1490' => 'fan', 'FAN14G5857' => 'fan', 'FAN18G1188' => 'fan', 'FvH4_5g00750' => 'fve', 'FvH4_6g13410' => 'fve', 'FvH4_7g11740' => 'fve', 'FvH4_7g17410' => 'fve', 'FvH4_7g18860' => 'fve', 'Glyma.01G099100' => 'gma', 'Glyma.01G142300' => 'gma', 'Glyma.03G025500' => 'gma', 'Glyma.03G069700' => 'gma', 'Glyma.03G260000' => 'gma', 'Glyma.09G269800' => 'gma', 'Glyma.10G208700' => 'gma', 'Glyma.18G220400' => 'gma', 'Glyma.20G182000' => 'gma', 'Gohir.A01G221726' => 'ghi', 'Gohir.A07G134600' => 'ghi', 'Gohir.A07G146000' => 'ghi', 'Gohir.A08G173900' => 'ghi', 'Gohir.A09G194900' => 'ghi', 'Gohir.A10G204100' => 'ghi', 'Gohir.A11G080600' => 'ghi', 'Gohir.A11G327500' => 'ghi', 'Gohir.A12G101800' => 'ghi', 'Gohir.D01G211200' => 'ghi', 'Gohir.D07G139200' => 'ghi', 'Gohir.D07G152100' => 'ghi', 'Gohir.D08G192600' => 'ghi', 'Gohir.D09G189200' => 'ghi', 'Gohir.D10G212000' => 'ghi', 'Gohir.D11G085200' => 'ghi', 'Gohir.D11G346400' => 'ghi', 'Gohir.D12G104800' => 'ghi', 'Gorai.001G151300' => 'gra', 'Gorai.001G174100' => 'gra', 'Gorai.002G257000' => 'gra', 'Gorai.004G202600' => 'gra', 'Gorai.007G090900' => 'gra', 'Gorai.007G376700' => 'gra', 'Gorai.008G114100' => 'gra', 'Gorai.011G237900' => 'gra', 'GSVIVG01005450001' => 'vvi', 'GSVIVG01016232001' => 'vvi', 'GSVIVG01026157001' => 'vvi', 'GSVIVG01027419001' => 'vvi', 'GSVIVG01027631001' => 'vvi', 'GSVIVG01034143001' => 'vvi', 'HanXRQChr03g0093921' => 'han', 'HanXRQChr04g0120001' => 'han', 'HanXRQChr04g0122561' => 'han', 'HanXRQChr09g0246851' => 'han', 'HanXRQChr10g0293311' => 'han', 'HanXRQChr13g0425231' => 'han', 'HanXRQChr16g0532571' => 'han', 'Haze_09050' => 'cav', 'Haze_15715' => 'cav', 'Haze_15716' => 'cav', 'Haze_16803' => 'cav', 'Haze_16850' => 'cav', 'Hma1.2p1_0301F.1_g118655' => 'hma', 'Hma1.2p1_0309F.1_g120590' => 'hma', 'Hma1.2p1_0936F.1_g238900' => 'hma', 'Hma1.2p1_3552F.1_g336740' => 'hma', 'HPP92_003520' => 'vpl', 'HPP92_006628' => 'vpl', 'HPP92_006645' => 'vpl', 'HPP92_014669' => 'vpl', 'HPP92_015077' => 'vpl', 'Hund16742' => 'sun', 'Hund17022' => 'sun', 'Lalb_Chr02g0152131' => 'lal', 'Lalb_Chr05g0225371' => 'lal', 'Lalb_Chr07g0189841' => 'lal', 'Lalb_Chr07g0192961' => 'lal', 'Lalb_Chr12g0208221' => 'lal', 'Lalb_Chr13g0291211' => 'lal', 'Lalb_Chr13g0291781' => 'lal', 'Lalb_Chr18g0044651' => 'lal', 'Lalb_Chr21g0313731' => 'lal', 'Lj1g0022533' => 'lja', 'Lj2A18T50' => 'lonja', 'Lj2A92G93' => 'lonja', 'Lj3A965T73' => 'lonja', 'Lj3g0000673' => 'lja', 'Lj3g0002666' => 'lja', 'Lj4g0016985' => 'lja', 'Lj5g0003625' => 'lja', 'Lj7A529G36' => 'lonja', 'Lj9A569T49' => 'lonja', 'Lj9A604T63' => 'lonja', 'Lsat_1_v5_gn_3_132060' => 'lsa', 'Lsat_1_v5_gn_4_68941' => 'lsa', 'Lsat_1_v5_gn_5_95580' => 'lsa', 'Lsat_1_v5_gn_7_161' => 'lsa', 'Lsat_1_v5_gn_7_7041' => 'lsa', 'Lsat_1_v5_gn_9_33481' => 'lsa', 'Lsat_1_v5_gn_9_68260' => 'lsa', 'Manes.01G073100' => 'mes', 'Manes.01G266300' => 'mes', 'Manes.02G033300' => 'mes', 'Manes.05G017900' => 'mes', 'Manes.05G046100' => 'mes', 'Manes.08G080900' => 'mes', 'Manes.10G049400' => 'mes', 'Mapoly0009s0186' => 'mpo', 'Mapoly0036s0118' => 'mpo', 'Mapoly0101s0046' => 'mpo', 'MBI04_g30218_MAGBIO' => 'mbi', 'MBI04_g35564_MAGBIO' => 'mbi', 'MBI12_g34011_MAGBIO' => 'mbi', 'MBI14_g04655_MAGBIO' => 'mbi', 'MCO07G653' => 'mco', 'MCO10G173' => 'mco', 'MD01G1087100' => 'mdo', 'MD01G1104200' => 'mdo', 'MD02G1205100' => 'mdo', 'MD04G1079200' => 'mdo', 'MD04G1131400' => 'mdo', 'MD07G1121600' => 'mdo', 'MD07G1157300' => 'mdo', 'MD07G1171000' => 'mdo', 'MD12G1144500' => 'mdo', 'Medtr1g094610' => 'mtr', 'Medtr4g021795' => 'mtr', 'Medtr4g023760' => 'mtr', 'Medtr7g118050' => 'mtr', 'MELO3C005582.2' => 'cme', 'MELO3C005989.2' => 'cme', 'MELO3C006192.2' => 'cme', 'MELO3C009248.2' => 'cme', 'MELO3C019817.2' => 'cme', 'Migut.B01625' => 'egut', 'Migut.B01915' => 'egut', 'Migut.F01721' => 'egut', 'Migut.J00314' => 'egut', 'MSTRG.20742' => 'ama', 'MSTRG.8134' => 'ama', 'Nitab4.5_0000096g0010' => 'nta', 'Nitab4.5_0000202g0030' => 'nta', 'Nitab4.5_0000216g0370' => 'nta', 'Nitab4.5_0000457g0230' => 'nta', 'Nitab4.5_0001702g0170' => 'nta', 'Nitab4.5_0003607g0010' => 'nta', 'Nitab4.5_0004917g0020' => 'nta', 'Nitab4.5_0007059g0010' => 'nta', 'Nitab4.5_0007184g0010' => 'nta', 'Nitab4.5_0007346g0020' => 'nta', 'Nn1g00410' => 'nnu', 'Nn1g01252' => 'nnu', 'Nn2g11168' => 'nnu', 'Nn2g13403' => 'nnu', 'Nn2g13760' => 'nnu', 'Nn4g26380' => 'nnu', 'Oeu000806.2' => 'oeu', 'Oeu005788.1' => 'oeu', 'Oeu006900.3' => 'oeu', 'Oeu007797.1' => 'oeu', 'Oeu011932.1' => 'oeu', 'Oeu022739.1' => 'oeu', 'Oeu037918.1' => 'oeu', 'Oeu055490.2' => 'oeu', 'Os01g0844400' => 'osa', 'Os02g0819100' => 'osa', 'Os03g0804300' => 'osa', 'Os05g0458000' => 'osa', 'Os07g0467800' => 'osa', 'Os12g0602200' => 'osa', 'Peaxi162Scf00013g03444' => 'pax', 'Peaxi162Scf00094g01120' => 'pax', 'Peaxi162Scf00191g01211' => 'pax', 'Peaxi162Scf00238g01110' => 'pax', 'Peaxi162Scf00330g00719' => 'pax', 'Peaxi162Scf00627g00018' => 'pax', 'PGR031G2686' => 'pgr', 'PGR042G0809' => 'pgr', 'PGR142G0193' => 'pgr', 'PGSC0003DMG400011066' => 'stu', 'PGSC0003DMG400012041' => 'stu', 'PGSC0003DMG400013678' => 'stu', 'PGSC0003DMG400023477' => 'stu', 'PGSC0003DMG400025956' => 'stu', 'PGSC0003DMG401019151' => 'stu', 'Phvul.006G116400' => 'pvu', 'Phvul.007G097300' => 'pvu', 'Phvul.010G015000' => 'pvu', 'Phvul.010G083900' => 'pvu', 'Potri.001G117100' => 'ptr', 'Potri.002G147300' => 'ptr', 'Potri.003G115600' => 'ptr', 'Potri.006G087400' => 'ptr', 'Potri.010G226100' => 'ptr', 'Potri.014G069200' => 'ptr', 'Potri.014G104000' => 'ptr', 'Potri.016G100200' => 'ptr', 'Pp3c10_20450' => 'ppa', 'Pp3c1_42400' => 'ppa', 'Pp3c3_24390' => 'ppa', 'Pp3c3_2860' => 'ppa', 'PRCOL_00003193' => 'pco', 'Prupe.2G144500' => 'ppe', 'Prupe.2G195700' => 'ppe', 'Prupe.2G209800' => 'ppe', 'Prupe.5G080000' => 'ppe', 'Prupe.6G257900' => 'ppe', 'Psat3g001160' => 'psa', 'Psat6g181880' => 'psa', 'Psat7g233720' => 'psa', 'PSO063G7587' => 'pso', 'PSO339G2145' => 'pso', 'PSO339G3369' => 'pso', 'PSO478G2747' => 'pso', 'PSO513G0140' => 'pso', 'PSO782G1614' => 'pso', 'PSO782G4889' => 'pso', 'PSO782G5485' => 'pso', 'PSO801G0241' => 'pso', 'QL07p048854' => 'qlo', 'QL08p046745' => 'qlo', 'QL08p052606' => 'qlo', 'QL08p053414' => 'qlo', 'QL08p054868' => 'qlo', 'RcHm_v2.0_Chr1g0350251' => 'rch', 'RcHm_v2.0_Chr1g0360851' => 'rch', 'RcHm_v2.0_Chr1g0362791' => 'rch', 'RcHm_v2.0_Chr3g0466281' => 'rch', 'RcHm_v2.0_Chr7g0201481' => 'rch', 'Rhsim01G0148600' => 'rsi', 'Rhsim05G0194400' => 'rsi', 'Rhsim07G0000700' => 'rsi', 'Rhsim07G0000800' => 'rsi', 'Rhsim07G0027900' => 'rsi', 'Rhsim09G0149500' => 'rsi', 'RhsimUnG0186900' => 'rsi', 'Sabra01G0089900' => 'sbr', 'Sabra02G0114700' => 'sbr', 'Sabra02G0116300' => 'sbr', 'Sabra03G0080100' => 'sbr', 'Sabra08G0024300' => 'sbr', 'Sabra10G0174300' => 'sbr', 'Sabra14G0048900' => 'sbr', 'Sabra14G0076500' => 'sbr', 'SalBow5G2513' => 'sbo', 'Sc01g0002300' => 'sci', 'Sc01g0004450' => 'sci', 'Sc06g0001680' => 'sci', 'Sc23g0003580' => 'sci', 'Sed0000913' => 'sed', 'Sed0001655' => 'sed', 'Sed0007745' => 'sed', 'Sed0010951' => 'sed', 'Sed0017599' => 'sed', 'Sed0021405' => 'sed', 'Sed0022810' => 'sed', 'SEGI_07099' => 'sgi', 'SEGI_11931' => 'sgi', 'SEGI_13187' => 'sgi', 'SEGI_29958' => 'sgi', 'SEGI_36351' => 'sgi', 'SGA_v2.0_scaffold126G33770' => 'sas', 'SGA_v2.0_scaffold153G37003' => 'sas', 'SGA_v2.0_scaffold2G01359' => 'sas', 'SGA_v2.0_scaffold5G03064' => 'sas', 'SGA_v2.0_scaffold95G28903' => 'sas', 'SHI12701' => 'shi', 'SHI26410' => 'shi', 'SHI38997' => 'shi', 'SHI53759' => 'shi', 'SHI53886' => 'shi', 'SHI54714' => 'shi', 'SMO011G0041' => 'smo', 'SMO146G0251' => 'smo', 'SMO160G0004' => 'smo', 'SMO174G0057' => 'smo', 'SMO244G0089' => 'smo', 'SMO296G0011' => 'smo', 'Solyc01g091280.3' => 'sly', 'Solyc05g047610.3' => 'sly', 'Solyc05g047640.3' => 'sly', 'Solyc05g055630.3' => 'sly', 'Solyc10g018160.2' => 'sly', 'Solyc10g084820.2' => 'sly', 'Solyc10g086565.2' => 'sly', 'Sopen01g037030' => 'spe', 'Sopen05g027920' => 'spe', 'Sopen05g034070' => 'spe', 'Sopen10g007260' => 'spe', 'Sopen10g034260' => 'spe', 'Sopen10g035950' => 'spe', 'Sp3g07710' => 'spa', 'Sp4g27420' => 'spa', 'Sp5g02450' => 'spa', 'Sp6g01280' => 'spa', 'Sp6g38480' => 'spa', 'Sp7g20780' => 'spa', 'TAR374G1413' => 'tar', 'TAR623G1777' => 'tar', 'TAR629G2370' => 'tar', 'TAR633G1759' => 'tar', 'TAR636G3387' => 'tar', 'THA.LOC104802447' => 'tha', 'THA.LOC104813916' => 'tha', 'THA.LOC104816423' => 'tha', 'THA.LOC104817246' => 'tha', 'THA.LOC104825895' => 'tha', 'Thecc.01G335200' => 'tca', 'Thecc.01G377400' => 'tca', 'Thecc.03G262200' => 'tca', 'Thecc.05G036800' => 'tca', 'Thecc.10G080500' => 'tca', 'Thecc.10G080800' => 'tca', 'Thhalv10001560m.g' => 'esa', 'Thhalv10006120m.g' => 'esa', 'Thhalv10014375m.g' => 'esa', 'Thhalv10021264m.g' => 'esa', 'Thhalv10028856m.g' => 'esa', 'TPR.G1914' => 'tpr', 'TPR.G4757' => 'tpr', 'TPR.G5595' => 'tpr', 'TWI14G0952' => 'twi', 'TWI14G1307' => 'twi', 'TWI38G2143' => 'twi', 'TWI59G0826' => 'twi', 'TWI77G0527' => 'twi', 'TWI81G0150' => 'twi', 'unitig_21.g21018' => 'ugi', 'unitig_26.g9725' => 'ugi', 'unitig_744.g24653' => 'ugi', 'unitig_749.g13778' => 'ugi', 'unitig_899.g15035' => 'ugi', 'vmacro04296' => 'vma', 'vmacro04852' => 'vma', 'vmacro13404' => 'vma', 'vmacro20169' => 'vma', 'vmacro21014' => 'vma', 'VMungo0331G0237' => 'vmu', 'VMungo0331G0706' => 'vmu', 'VMungo0331G1361' => 'vmu', 'VMungo0331G1489' => 'vmu', 'VMungo0540G1037' => 'vmu', 'VMungo0720G2487' => 'vmu', 'VMungo0720G2721' => 'vmu', 'Zm00001eb086860' => 'zma', 'Zm00001eb104760' => 'zma', 'Zm00001eb148220' => 'zma', 'Zm00001eb259030' => 'zma', 'Zm00001eb289590' => 'zma', 'Zm00001eb420150' => 'zma' ), 'gf_id' => 'HOM05D000968', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000968' ), 'data_identifier' => 'HOM05D000968', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000968', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p31690' => 'bna', 'A03p36040' => 'bna', 'A03p53730' => 'bna', 'A04p01410' => 'bna', 'A05p05420' => 'bna', 'A05p39630' => 'bna', 'A05p39640' => 'bna', 'A09p00970' => 'bna', 'A09p53060' => 'bna', 'A10p31890' => 'bna', 'Aa31LG10G15040' => 'aar', 'Aa31LG1G21090' => 'aar', 'Aa31LG1G26900' => 'aar', 'Aa31LG3G1820' => 'aar', 'Aa31LG5G1100' => 'aar', 'Aa31LG6G4740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2265' => 'aag', 'Actinidia07998' => 'ach', 'Actinidia11266' => 'ach', 'Actinidia12682' => 'ach', 'Actinidia26479' => 'ach', 'Actinidia31406' => 'ach', 'Actinidia32437' => 'ach', 'Actinidia38862' => 'ach', 'Ah.05g174230' => 'amhyb', 'Ah.05g179070' => 'amhyb', 'Ah.05g179090' => 'amhyb', 'Ah.12g059950' => 'amhyb', 'AL3G20480' => 'aly', 'AL4G44520' => 'aly', 'AL5G43110' => 'aly', 'AL6G13890' => 'aly', 'AL6G52620' => 'aly', 'AL7G30830' => 'aly', 'Aqoxy1G00899' => 'aox', 'Aqoxy5G04333' => 'aox', 'Aqoxy7G00641' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3IZ0NN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4EF6AW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W9P8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79GA3M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C43NQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFCU6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G95YVJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCHK29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LU1UG8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX91RN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGB4B1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8DA0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9H7JI' => 'arhy', 'AT3G09320' => 'ath', 'AT3G60800' => 'ath', 'AT4G00840' => 'ath', 'AT4G22750' => 'ath', 'AT5G04270' => 'ath', 'ATR0090G003' => 'atr', 'ATR0559G349' => 'atr', 'ATR0680G261' => 'atr', 'ATR0810G048' => 'atr', 'Atru.chr12.831' => 'acertr', 'Atru.chr5.303' => 'acertr', 'Atru.chr5.748' => 'acertr', 'Atru.chr8.1999' => 'acertr', 'Atru.chr9.1436' => 'acertr', 'AUR62004211' => 'cqu', 'AUR62004548' => 'cqu', 'AUR62013637' => 'cqu', 'AUR62022662' => 'cqu', 'AUR62025777' => 'cqu', 'AUR62042386' => 'cqu', 'BcaB01g02310' => 'bca', 'BcaB01g06062' => 'bca', 'BcaB02g08975' => 'bca', 'BcaB02g08980' => 'bca', 'BcaC01g04228' => 'bca', 'BcaC01g06830' => 'bca', 'BcaC02g10186' => 'bca', 'BcaC02g12214' => 'bca', 'BcaC04g24101' => 'bca', 'BcaC05g29520' => 'bca', 'BcaC05g29661' => 'bca', 'BcaC06g32130' => 'bca', 'BcaC06g32131' => 'bca', 'BcaC07g40601' => 'bca', 'BcaC07g42641' => 'bca', 'BcaNung01038' => 'bca', 'BcaNung01676' => 'bca', 'BcaNung02480' => 'bca', 'BcaNung07376' => 'bca', 'BolC3t16146H' => 'bol', 'BolC3t16637H' => 'bol', 'BolC4t22257H' => 'bol', 'BolC4t24728H' => 'bol', 'BolC5t34517H' => 'bol', 'BolC7t45703H' => 'bol', 'BolC8t51166H' => 'bol', 'BolC9t53038H' => 'bol', 'BolC9t60000H' => 'bol', 'BraA01t01345Z' => 'bra', 'BraA01t01346Z' => 'bra', 'BraA01t01348Z' => 'bra', 'BraA03t12347Z' => 'bra', 'BraA03t12775Z' => 'bra', 'BraA03t14439Z' => 'bra', 'BraA04t15860Z' => 'bra', 'BraA05t19511Z' => 'bra', 'BraA05t22746Z' => 'bra', 'BraA09t35767Z' => 'bra', 'BraA09t40732Z' => 'bra', 'BraA10t45233Z' => 'bra', 'C03p38720' => 'bna', 'C03p43680' => 'bna', 'C04p06350' => 'bna', 'C04p31800' => 'bna', 'C05p58680' => 'bna', 'C07p52110' => 'bna', 'C08p35760' => 'bna', 'C09p01050' => 'bna', 'C09p72600' => 'bna', 'CAN.G106.2' => 'can', 'CAN.G1482.1' => 'can', 'CAN.G324.12' => 'can', 'CAN.G388.20' => 'can', 'CAN.G412.7' => 'can', 'CAN.G694.32' => 'can', 'CAN.G92.12' => 'can', 'CANSAT11G2353' => 'cansat', 'CANSAT21G1398' => 'cansat', 'CANSAT56G2456' => 'cansat', 'CANSAT56G3031' => 'cansat', 'CANSAT56G4539' => 'cansat', 'CARHR083680' => 'chi', 'CARHR171190' => 'chi', 'CARHR209010' => 'chi', 'CARHR229680' => 'chi', 'CARHR249490' => 'chi', 'Carub.0003s0844' => 'cru', 'Carub.0005s2755' => 'cru', 'Carub.0006s0322' => 'cru', 'Carub.0006s3586' => 'cru', 'Carub.0007s1855' => 'cru', 'Ca_07808_v3' => 'car', 'Ca_09535_v3' => 'car', 'Ca_10548_v3' => 'car', 'Ca_19913_v3' => 'car', 'Ca_19916_v3' => 'car', 'Ca_19975_v3' => 'car', 'CBR_g22876' => 'cbr', 'CBR_g22879' => 'cbr', 'CBR_g38491' => 'cbr', 'CBR_g54185' => 'cbr', 'CBR_g54190' => 'cbr', 'Cc02_g11020' => 'ccan', 'Cc02_g23920' => 'ccan', 'Cc02_g39860' => 'ccan', 'Cc02_g39870' => 'ccan', 'Cc03_g06760' => 'ccan', 'Cc06_g02450' => 'ccan', 'Cc09_g09450' => 'ccan', 'CDE02G1959' => 'cde', 'CDE04G0600' => 'cde', 'CDE07G1996' => 'cde', 'CDE07G2078' => 'cde', 'CDE11G0611' => 'cde', 'Cfa001683' => 'cfa', 'Cfa001734' => 'cfa', 'Cfa001737' => 'cfa', 'Cfa003751' => 'cfa', 'Cfa012019' => 'cfa', 'Cfa017353' => 'cfa', 'Cfa017732' => 'cfa', 'Cfa022464' => 'cfa', 'Ciclev10012400m.g' => 'ccl', 'Ciclev10021242m.g' => 'ccl', 'Ciclev10021302m.g' => 'ccl', 'Ciclev10021463m.g' => 'ccl', 'Ciclev10032359m.g' => 'ccl', 'CiPaw.01G081000' => 'cil', 'CiPaw.01G262500' => 'cil', 'CiPaw.01G269800' => 'cil', 'CiPaw.02G168400' => 'cil', 'CiPaw.05G119500' => 'cil', 'CiPaw.11G147300' => 'cil', 'ClCG01G003630' => 'cla', 'ClCG05G000510' => 'cla', 'ClCG05G002300' => 'cla', 'ClCG08G007650' => 'cla', 'ClCG10G021250' => 'cla', 'COL.COLO4_06218' => 'col', 'COL.COLO4_12538' => 'col', 'COL.COLO4_14775' => 'col', 'COL.COLO4_23875' => 'col', 'Cpa.g.sc141.16' => 'cpa', 'Cpa.g.sc169.16' => 'cpa', 'Cpa.g.sc244.4' => 'cpa', 'Cpa.g.sc244.5' => 'cpa', 'Cpa.g.sc29.87' => 'cpa', 'Cpa.g.sc53.115' => 'cpa', 'Cre03.g207502' => 'cre', 'Cre06.g277000' => 'cre', 'Cre09.g394050' => 'cre', 'CsaV3_3G007680' => 'csa', 'CsaV3_3G009710' => 'csa', 'CsaV3_3G034790' => 'csa', 'CsaV3_5G003750' => 'csa', 'CsaV3_6G036620' => 'csa', 'CSS0002288' => 'camsi', 'CSS0011250' => 'camsi', 'CSS0021619' => 'camsi', 'CSS0046701' => 'camsi', 'DCAR_006420' => 'dca', 'DCAR_006865' => 'dca', 'DCAR_008558' => 'dca', 'DCAR_028754' => 'dca', 'DCAR_028755' => 'dca', 'Dinv31218' => 'din', 'Dinv32371' => 'din', 'Dinv34250' => 'din', 'Dinv37156' => 'din', 'Dinv43704' => 'din', 'Duzib093G1811' => 'dzi', 'Duzib106G1622' => 'dzi', 'Duzib114G0504' => 'dzi', 'Duzib128G0338' => 'dzi', 'Duzib128G1577' => 'dzi', 'Duzib133G0104' => 'dzi', 'Duzib133G1080' => 'dzi', 'Duzib138G0324' => 'dzi', 'Duzib138G0394' => 'dzi', 'Duzib205G0122' => 'dzi', 'Duzib268G1020' => 'dzi', 'Duzib268G1359' => 'dzi', 'ECA232G3929' => 'eca', 'ECA236G2210' => 'eca', 'ECA236G2287' => 'eca', 'ECA240G4568' => 'eca', 'ECA247G0894' => 'eca', 'EL10Ac1g00200' => 'bvu', 'EL10Ac1g00886' => 'bvu', 'EL10As1g23091' => 'bvu', 'EL10As1g23092' => 'bvu', 'Eucgr.A01284' => 'egr', 'Eucgr.A01285' => 'egr', 'Eucgr.D02456' => 'egr', 'Eucgr.E00018' => 'egr', 'Eucgr.E01439' => 'egr', 'Eucgr.G02859' => 'egr', 'FAN01G0168' => 'fan', 'FAN01G0453' => 'fan', 'FAN01G2761' => 'fan', 'FAN02G1239' => 'fan', 'FAN03G0645' => 'fan', 'FAN03G2707' => 'fan', 'FAN03G2978' => 'fan', 'FAN04G0227' => 'fan', 'FAN06G0091' => 'fan', 'FAN06G1418' => 'fan', 'FAN06G1512' => 'fan', 'FAN06G1986' => 'fan', 'FAN06G2905' => 'fan', 'FAN06G4325' => 'fan', 'FAN08G0033' => 'fan', 'FAN09G0642' => 'fan', 'FAN10G1763' => 'fan', 'FAN10G2026' => 'fan', 'FAN10G2513' => 'fan', 'FAN10G3402' => 'fan', 'FAN10G3564' => 'fan', 'FAN10G3987' => 'fan', 'FAN13G1490' => 'fan', 'FAN14G5857' => 'fan', 'FAN18G1188' => 'fan', 'FvH4_5g00750' => 'fve', 'FvH4_6g13410' => 'fve', 'FvH4_7g11740' => 'fve', 'FvH4_7g17410' => 'fve', 'FvH4_7g18860' => 'fve', 'Glyma.01G099100' => 'gma', 'Glyma.01G142300' => 'gma', 'Glyma.03G025500' => 'gma', 'Glyma.03G069700' => 'gma', 'Glyma.03G260000' => 'gma', 'Glyma.09G269800' => 'gma', 'Glyma.10G208700' => 'gma', 'Glyma.18G220400' => 'gma', 'Glyma.20G182000' => 'gma', 'Gohir.A01G221726' => 'ghi', 'Gohir.A07G134600' => 'ghi', 'Gohir.A07G146000' => 'ghi', 'Gohir.A08G173900' => 'ghi', 'Gohir.A09G194900' => 'ghi', 'Gohir.A10G204100' => 'ghi', 'Gohir.A11G080600' => 'ghi', 'Gohir.A11G327500' => 'ghi', 'Gohir.A12G101800' => 'ghi', 'Gohir.D01G211200' => 'ghi', 'Gohir.D07G139200' => 'ghi', 'Gohir.D07G152100' => 'ghi', 'Gohir.D08G192600' => 'ghi', 'Gohir.D09G189200' => 'ghi', 'Gohir.D10G212000' => 'ghi', 'Gohir.D11G085200' => 'ghi', 'Gohir.D11G346400' => 'ghi', 'Gohir.D12G104800' => 'ghi', 'Gorai.001G151300' => 'gra', 'Gorai.001G174100' => 'gra', 'Gorai.002G257000' => 'gra', 'Gorai.004G202600' => 'gra', 'Gorai.007G090900' => 'gra', 'Gorai.007G376700' => 'gra', 'Gorai.008G114100' => 'gra', 'Gorai.011G237900' => 'gra', 'GSVIVG01005450001' => 'vvi', 'GSVIVG01016232001' => 'vvi', 'GSVIVG01026157001' => 'vvi', 'GSVIVG01027419001' => 'vvi', 'GSVIVG01027631001' => 'vvi', 'GSVIVG01034143001' => 'vvi', 'HanXRQChr03g0093921' => 'han', 'HanXRQChr04g0120001' => 'han', 'HanXRQChr04g0122561' => 'han', 'HanXRQChr09g0246851' => 'han', 'HanXRQChr10g0293311' => 'han', 'HanXRQChr13g0425231' => 'han', 'HanXRQChr16g0532571' => 'han', 'Haze_09050' => 'cav', 'Haze_15715' => 'cav', 'Haze_15716' => 'cav', 'Haze_16803' => 'cav', 'Haze_16850' => 'cav', 'Hma1.2p1_0301F.1_g118655' => 'hma', 'Hma1.2p1_0309F.1_g120590' => 'hma', 'Hma1.2p1_0936F.1_g238900' => 'hma', 'Hma1.2p1_3552F.1_g336740' => 'hma', 'HPP92_003520' => 'vpl', 'HPP92_006628' => 'vpl', 'HPP92_006645' => 'vpl', 'HPP92_014669' => 'vpl', 'HPP92_015077' => 'vpl', 'Hund16742' => 'sun', 'Hund17022' => 'sun', 'Lalb_Chr02g0152131' => 'lal', 'Lalb_Chr05g0225371' => 'lal', 'Lalb_Chr07g0189841' => 'lal', 'Lalb_Chr07g0192961' => 'lal', 'Lalb_Chr12g0208221' => 'lal', 'Lalb_Chr13g0291211' => 'lal', 'Lalb_Chr13g0291781' => 'lal', 'Lalb_Chr18g0044651' => 'lal', 'Lalb_Chr21g0313731' => 'lal', 'Lj1g0022533' => 'lja', 'Lj2A18T50' => 'lonja', 'Lj2A92G93' => 'lonja', 'Lj3A965T73' => 'lonja', 'Lj3g0000673' => 'lja', 'Lj3g0002666' => 'lja', 'Lj4g0016985' => 'lja', 'Lj5g0003625' => 'lja', 'Lj7A529G36' => 'lonja', 'Lj9A569T49' => 'lonja', 'Lj9A604T63' => 'lonja', 'Lsat_1_v5_gn_3_132060' => 'lsa', 'Lsat_1_v5_gn_4_68941' => 'lsa', 'Lsat_1_v5_gn_5_95580' => 'lsa', 'Lsat_1_v5_gn_7_161' => 'lsa', 'Lsat_1_v5_gn_7_7041' => 'lsa', 'Lsat_1_v5_gn_9_33481' => 'lsa', 'Lsat_1_v5_gn_9_68260' => 'lsa', 'Manes.01G073100' => 'mes', 'Manes.01G266300' => 'mes', 'Manes.02G033300' => 'mes', 'Manes.05G017900' => 'mes', 'Manes.05G046100' => 'mes', 'Manes.08G080900' => 'mes', 'Manes.10G049400' => 'mes', 'Mapoly0009s0186' => 'mpo', 'Mapoly0036s0118' => 'mpo', 'Mapoly0101s0046' => 'mpo', 'MBI04_g30218_MAGBIO' => 'mbi', 'MBI04_g35564_MAGBIO' => 'mbi', 'MBI12_g34011_MAGBIO' => 'mbi', 'MBI14_g04655_MAGBIO' => 'mbi', 'MCO07G653' => 'mco', 'MCO10G173' => 'mco', 'MD01G1087100' => 'mdo', 'MD01G1104200' => 'mdo', 'MD02G1205100' => 'mdo', 'MD04G1079200' => 'mdo', 'MD04G1131400' => 'mdo', 'MD07G1121600' => 'mdo', 'MD07G1157300' => 'mdo', 'MD07G1171000' => 'mdo', 'MD12G1144500' => 'mdo', 'Medtr1g094610' => 'mtr', 'Medtr4g021795' => 'mtr', 'Medtr4g023760' => 'mtr', 'Medtr7g118050' => 'mtr', 'MELO3C005582.2' => 'cme', 'MELO3C005989.2' => 'cme', 'MELO3C006192.2' => 'cme', 'MELO3C009248.2' => 'cme', 'MELO3C019817.2' => 'cme', 'Migut.B01625' => 'egut', 'Migut.B01915' => 'egut', 'Migut.F01721' => 'egut', 'Migut.J00314' => 'egut', 'MSTRG.20742' => 'ama', 'MSTRG.8134' => 'ama', 'Nitab4.5_0000096g0010' => 'nta', 'Nitab4.5_0000202g0030' => 'nta', 'Nitab4.5_0000216g0370' => 'nta', 'Nitab4.5_0000457g0230' => 'nta', 'Nitab4.5_0001702g0170' => 'nta', 'Nitab4.5_0003607g0010' => 'nta', 'Nitab4.5_0004917g0020' => 'nta', 'Nitab4.5_0007059g0010' => 'nta', 'Nitab4.5_0007184g0010' => 'nta', 'Nitab4.5_0007346g0020' => 'nta', 'Nn1g00410' => 'nnu', 'Nn1g01252' => 'nnu', 'Nn2g11168' => 'nnu', 'Nn2g13403' => 'nnu', 'Nn2g13760' => 'nnu', 'Nn4g26380' => 'nnu', 'Oeu000806.2' => 'oeu', 'Oeu005788.1' => 'oeu', 'Oeu006900.3' => 'oeu', 'Oeu007797.1' => 'oeu', 'Oeu011932.1' => 'oeu', 'Oeu022739.1' => 'oeu', 'Oeu037918.1' => 'oeu', 'Oeu055490.2' => 'oeu', 'Os01g0844400' => 'osa', 'Os02g0819100' => 'osa', 'Os03g0804300' => 'osa', 'Os05g0458000' => 'osa', 'Os07g0467800' => 'osa', 'Os12g0602200' => 'osa', 'Peaxi162Scf00013g03444' => 'pax', 'Peaxi162Scf00094g01120' => 'pax', 'Peaxi162Scf00191g01211' => 'pax', 'Peaxi162Scf00238g01110' => 'pax', 'Peaxi162Scf00330g00719' => 'pax', 'Peaxi162Scf00627g00018' => 'pax', 'PGR031G2686' => 'pgr', 'PGR042G0809' => 'pgr', 'PGR142G0193' => 'pgr', 'PGSC0003DMG400011066' => 'stu', 'PGSC0003DMG400012041' => 'stu', 'PGSC0003DMG400013678' => 'stu', 'PGSC0003DMG400023477' => 'stu', 'PGSC0003DMG400025956' => 'stu', 'PGSC0003DMG401019151' => 'stu', 'Phvul.006G116400' => 'pvu', 'Phvul.007G097300' => 'pvu', 'Phvul.010G015000' => 'pvu', 'Phvul.010G083900' => 'pvu', 'Potri.001G117100' => 'ptr', 'Potri.002G147300' => 'ptr', 'Potri.003G115600' => 'ptr', 'Potri.006G087400' => 'ptr', 'Potri.010G226100' => 'ptr', 'Potri.014G069200' => 'ptr', 'Potri.014G104000' => 'ptr', 'Potri.016G100200' => 'ptr', 'Pp3c10_20450' => 'ppa', 'Pp3c1_42400' => 'ppa', 'Pp3c3_24390' => 'ppa', 'Pp3c3_2860' => 'ppa', 'PRCOL_00003193' => 'pco', 'Prupe.2G144500' => 'ppe', 'Prupe.2G195700' => 'ppe', 'Prupe.2G209800' => 'ppe', 'Prupe.5G080000' => 'ppe', 'Prupe.6G257900' => 'ppe', 'Psat3g001160' => 'psa', 'Psat6g181880' => 'psa', 'Psat7g233720' => 'psa', 'PSO063G7587' => 'pso', 'PSO339G2145' => 'pso', 'PSO339G3369' => 'pso', 'PSO478G2747' => 'pso', 'PSO513G0140' => 'pso', 'PSO782G1614' => 'pso', 'PSO782G4889' => 'pso', 'PSO782G5485' => 'pso', 'PSO801G0241' => 'pso', 'QL07p048854' => 'qlo', 'QL08p046745' => 'qlo', 'QL08p052606' => 'qlo', 'QL08p053414' => 'qlo', 'QL08p054868' => 'qlo', 'RcHm_v2.0_Chr1g0350251' => 'rch', 'RcHm_v2.0_Chr1g0360851' => 'rch', 'RcHm_v2.0_Chr1g0362791' => 'rch', 'RcHm_v2.0_Chr3g0466281' => 'rch', 'RcHm_v2.0_Chr7g0201481' => 'rch', 'Rhsim01G0148600' => 'rsi', 'Rhsim05G0194400' => 'rsi', 'Rhsim07G0000700' => 'rsi', 'Rhsim07G0000800' => 'rsi', 'Rhsim07G0027900' => 'rsi', 'Rhsim09G0149500' => 'rsi', 'RhsimUnG0186900' => 'rsi', 'Sabra01G0089900' => 'sbr', 'Sabra02G0114700' => 'sbr', 'Sabra02G0116300' => 'sbr', 'Sabra03G0080100' => 'sbr', 'Sabra08G0024300' => 'sbr', 'Sabra10G0174300' => 'sbr', 'Sabra14G0048900' => 'sbr', 'Sabra14G0076500' => 'sbr', 'SalBow5G2513' => 'sbo', 'Sc01g0002300' => 'sci', 'Sc01g0004450' => 'sci', 'Sc06g0001680' => 'sci', 'Sc23g0003580' => 'sci', 'Sed0000913' => 'sed', 'Sed0001655' => 'sed', 'Sed0007745' => 'sed', 'Sed0010951' => 'sed', 'Sed0017599' => 'sed', 'Sed0021405' => 'sed', 'Sed0022810' => 'sed', 'SEGI_07099' => 'sgi', 'SEGI_11931' => 'sgi', 'SEGI_13187' => 'sgi', 'SEGI_29958' => 'sgi', 'SEGI_36351' => 'sgi', 'SGA_v2.0_scaffold126G33770' => 'sas', 'SGA_v2.0_scaffold153G37003' => 'sas', 'SGA_v2.0_scaffold2G01359' => 'sas', 'SGA_v2.0_scaffold5G03064' => 'sas', 'SGA_v2.0_scaffold95G28903' => 'sas', 'SHI12701' => 'shi', 'SHI26410' => 'shi', 'SHI38997' => 'shi', 'SHI53759' => 'shi', 'SHI53886' => 'shi', 'SHI54714' => 'shi', 'SMO011G0041' => 'smo', 'SMO146G0251' => 'smo', 'SMO160G0004' => 'smo', 'SMO174G0057' => 'smo', 'SMO244G0089' => 'smo', 'SMO296G0011' => 'smo', 'Solyc01g091280.3' => 'sly', 'Solyc05g047610.3' => 'sly', 'Solyc05g047640.3' => 'sly', 'Solyc05g055630.3' => 'sly', 'Solyc10g018160.2' => 'sly', 'Solyc10g084820.2' => 'sly', 'Solyc10g086565.2' => 'sly', 'Sopen01g037030' => 'spe', 'Sopen05g027920' => 'spe', 'Sopen05g034070' => 'spe', 'Sopen10g007260' => 'spe', 'Sopen10g034260' => 'spe', 'Sopen10g035950' => 'spe', 'Sp3g07710' => 'spa', 'Sp4g27420' => 'spa', 'Sp5g02450' => 'spa', 'Sp6g01280' => 'spa', 'Sp6g38480' => 'spa', 'Sp7g20780' => 'spa', 'TAR374G1413' => 'tar', 'TAR623G1777' => 'tar', 'TAR629G2370' => 'tar', 'TAR633G1759' => 'tar', 'TAR636G3387' => 'tar', 'THA.LOC104802447' => 'tha', 'THA.LOC104813916' => 'tha', 'THA.LOC104816423' => 'tha', 'THA.LOC104817246' => 'tha', 'THA.LOC104825895' => 'tha', 'Thecc.01G335200' => 'tca', 'Thecc.01G377400' => 'tca', 'Thecc.03G262200' => 'tca', 'Thecc.05G036800' => 'tca', 'Thecc.10G080500' => 'tca', 'Thecc.10G080800' => 'tca', 'Thhalv10001560m.g' => 'esa', 'Thhalv10006120m.g' => 'esa', 'Thhalv10014375m.g' => 'esa', 'Thhalv10021264m.g' => 'esa', 'Thhalv10028856m.g' => 'esa', 'TPR.G1914' => 'tpr', 'TPR.G4757' => 'tpr', 'TPR.G5595' => 'tpr', 'TWI14G0952' => 'twi', 'TWI14G1307' => 'twi', 'TWI38G2143' => 'twi', 'TWI59G0826' => 'twi', 'TWI77G0527' => 'twi', 'TWI81G0150' => 'twi', 'unitig_21.g21018' => 'ugi', 'unitig_26.g9725' => 'ugi', 'unitig_744.g24653' => 'ugi', 'unitig_749.g13778' => 'ugi', 'unitig_899.g15035' => 'ugi', 'vmacro04296' => 'vma', 'vmacro04852' => 'vma', 'vmacro13404' => 'vma', 'vmacro20169' => 'vma', 'vmacro21014' => 'vma', 'VMungo0331G0237' => 'vmu', 'VMungo0331G0706' => 'vmu', 'VMungo0331G1361' => 'vmu', 'VMungo0331G1489' => 'vmu', 'VMungo0540G1037' => 'vmu', 'VMungo0720G2487' => 'vmu', 'VMungo0720G2721' => 'vmu', 'Zm00001eb086860' => 'zma', 'Zm00001eb104760' => 'zma', 'Zm00001eb148220' => 'zma', 'Zm00001eb259030' => 'zma', 'Zm00001eb289590' => 'zma', 'Zm00001eb420150' => 'zma' ) $gf_id = 'HOM05D000968' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000968' ) $data_identifier = 'HOM05D000968' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 19, 'bol' => (int) 9, 'bra' => (int) 12, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 5, 'ccan' => (int) 7, 'cde' => (int) 5, 'cfa' => (int) 8, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 4, 'dca' => (int) 5, 'din' => (int) 5, 'dzi' => (int) 12, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 25, 'fve' => (int) 5, 'gma' => (int) 9, 'ghi' => (int) 18, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 7, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 5, 'sun' => (int) 2, 'lal' => (int) 9, 'lja' => (int) 5, 'lonja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 9, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 2, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 3, 'stu' => (int) 6, 'pvu' => (int) 4, 'ptr' => (int) 8, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 3, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 1, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 5, 'sas' => (int) 5, 'shi' => (int) 6, 'smo' => (int) 6, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 3, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420150' $species_info = array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ) $local_species = 'twi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000968', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p31690' => 'bna', 'A03p36040' => 'bna', 'A03p53730' => 'bna', 'A04p01410' => 'bna', 'A05p05420' => 'bna', 'A05p39630' => 'bna', 'A05p39640' => 'bna', 'A09p00970' => 'bna', 'A09p53060' => 'bna', 'A10p31890' => 'bna', 'Aa31LG10G15040' => 'aar', 'Aa31LG1G21090' => 'aar', 'Aa31LG1G26900' => 'aar', 'Aa31LG3G1820' => 'aar', 'Aa31LG5G1100' => 'aar', 'Aa31LG6G4740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2265' => 'aag', 'Actinidia07998' => 'ach', 'Actinidia11266' => 'ach', 'Actinidia12682' => 'ach', 'Actinidia26479' => 'ach', 'Actinidia31406' => 'ach', 'Actinidia32437' => 'ach', 'Actinidia38862' => 'ach', 'Ah.05g174230' => 'amhyb', 'Ah.05g179070' => 'amhyb', 'Ah.05g179090' => 'amhyb', 'Ah.12g059950' => 'amhyb', 'AL3G20480' => 'aly', 'AL4G44520' => 'aly', 'AL5G43110' => 'aly', 'AL6G13890' => 'aly', 'AL6G52620' => 'aly', 'AL7G30830' => 'aly', 'Aqoxy1G00899' => 'aox', 'Aqoxy5G04333' => 'aox', 'Aqoxy7G00641' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3IZ0NN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4EF6AW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W9P8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79GA3M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C43NQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFCU6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G95YVJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCHK29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LU1UG8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX91RN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGB4B1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8DA0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9H7JI' => 'arhy', 'AT3G09320' => 'ath', 'AT3G60800' => 'ath', 'AT4G00840' => 'ath', 'AT4G22750' => 'ath', 'AT5G04270' => 'ath', 'ATR0090G003' => 'atr', 'ATR0559G349' => 'atr', 'ATR0680G261' => 'atr', 'ATR0810G048' => 'atr', 'Atru.chr12.831' => 'acertr', 'Atru.chr5.303' => 'acertr', 'Atru.chr5.748' => 'acertr', 'Atru.chr8.1999' => 'acertr', 'Atru.chr9.1436' => 'acertr', 'AUR62004211' => 'cqu', 'AUR62004548' => 'cqu', 'AUR62013637' => 'cqu', 'AUR62022662' => 'cqu', 'AUR62025777' => 'cqu', 'AUR62042386' => 'cqu', 'BcaB01g02310' => 'bca', 'BcaB01g06062' => 'bca', 'BcaB02g08975' => 'bca', 'BcaB02g08980' => 'bca', 'BcaC01g04228' => 'bca', 'BcaC01g06830' => 'bca', 'BcaC02g10186' => 'bca', 'BcaC02g12214' => 'bca', 'BcaC04g24101' => 'bca', 'BcaC05g29520' => 'bca', 'BcaC05g29661' => 'bca', 'BcaC06g32130' => 'bca', 'BcaC06g32131' => 'bca', 'BcaC07g40601' => 'bca', 'BcaC07g42641' => 'bca', 'BcaNung01038' => 'bca', 'BcaNung01676' => 'bca', 'BcaNung02480' => 'bca', 'BcaNung07376' => 'bca', 'BolC3t16146H' => 'bol', 'BolC3t16637H' => 'bol', 'BolC4t22257H' => 'bol', 'BolC4t24728H' => 'bol', 'BolC5t34517H' => 'bol', 'BolC7t45703H' => 'bol', 'BolC8t51166H' => 'bol', 'BolC9t53038H' => 'bol', 'BolC9t60000H' => 'bol', 'BraA01t01345Z' => 'bra', 'BraA01t01346Z' => 'bra', 'BraA01t01348Z' => 'bra', 'BraA03t12347Z' => 'bra', 'BraA03t12775Z' => 'bra', 'BraA03t14439Z' => 'bra', 'BraA04t15860Z' => 'bra', 'BraA05t19511Z' => 'bra', 'BraA05t22746Z' => 'bra', 'BraA09t35767Z' => 'bra', 'BraA09t40732Z' => 'bra', 'BraA10t45233Z' => 'bra', 'C03p38720' => 'bna', 'C03p43680' => 'bna', 'C04p06350' => 'bna', 'C04p31800' => 'bna', 'C05p58680' => 'bna', 'C07p52110' => 'bna', 'C08p35760' => 'bna', 'C09p01050' => 'bna', 'C09p72600' => 'bna', 'CAN.G106.2' => 'can', 'CAN.G1482.1' => 'can', 'CAN.G324.12' => 'can', 'CAN.G388.20' => 'can', 'CAN.G412.7' => 'can', 'CAN.G694.32' => 'can', 'CAN.G92.12' => 'can', 'CANSAT11G2353' => 'cansat', 'CANSAT21G1398' => 'cansat', 'CANSAT56G2456' => 'cansat', 'CANSAT56G3031' => 'cansat', 'CANSAT56G4539' => 'cansat', 'CARHR083680' => 'chi', 'CARHR171190' => 'chi', 'CARHR209010' => 'chi', 'CARHR229680' => 'chi', 'CARHR249490' => 'chi', 'Carub.0003s0844' => 'cru', 'Carub.0005s2755' => 'cru', 'Carub.0006s0322' => 'cru', 'Carub.0006s3586' => 'cru', 'Carub.0007s1855' => 'cru', 'Ca_07808_v3' => 'car', 'Ca_09535_v3' => 'car', 'Ca_10548_v3' => 'car', 'Ca_19913_v3' => 'car', 'Ca_19916_v3' => 'car', 'Ca_19975_v3' => 'car', 'CBR_g22876' => 'cbr', 'CBR_g22879' => 'cbr', 'CBR_g38491' => 'cbr', 'CBR_g54185' => 'cbr', 'CBR_g54190' => 'cbr', 'Cc02_g11020' => 'ccan', 'Cc02_g23920' => 'ccan', 'Cc02_g39860' => 'ccan', 'Cc02_g39870' => 'ccan', 'Cc03_g06760' => 'ccan', 'Cc06_g02450' => 'ccan', 'Cc09_g09450' => 'ccan', 'CDE02G1959' => 'cde', 'CDE04G0600' => 'cde', 'CDE07G1996' => 'cde', 'CDE07G2078' => 'cde', 'CDE11G0611' => 'cde', 'Cfa001683' => 'cfa', 'Cfa001734' => 'cfa', 'Cfa001737' => 'cfa', 'Cfa003751' => 'cfa', 'Cfa012019' => 'cfa', 'Cfa017353' => 'cfa', 'Cfa017732' => 'cfa', 'Cfa022464' => 'cfa', 'Ciclev10012400m.g' => 'ccl', 'Ciclev10021242m.g' => 'ccl', 'Ciclev10021302m.g' => 'ccl', 'Ciclev10021463m.g' => 'ccl', 'Ciclev10032359m.g' => 'ccl', 'CiPaw.01G081000' => 'cil', 'CiPaw.01G262500' => 'cil', 'CiPaw.01G269800' => 'cil', 'CiPaw.02G168400' => 'cil', 'CiPaw.05G119500' => 'cil', 'CiPaw.11G147300' => 'cil', 'ClCG01G003630' => 'cla', 'ClCG05G000510' => 'cla', 'ClCG05G002300' => 'cla', 'ClCG08G007650' => 'cla', 'ClCG10G021250' => 'cla', 'COL.COLO4_06218' => 'col', 'COL.COLO4_12538' => 'col', 'COL.COLO4_14775' => 'col', 'COL.COLO4_23875' => 'col', 'Cpa.g.sc141.16' => 'cpa', 'Cpa.g.sc169.16' => 'cpa', 'Cpa.g.sc244.4' => 'cpa', 'Cpa.g.sc244.5' => 'cpa', 'Cpa.g.sc29.87' => 'cpa', 'Cpa.g.sc53.115' => 'cpa', 'Cre03.g207502' => 'cre', 'Cre06.g277000' => 'cre', 'Cre09.g394050' => 'cre', 'CsaV3_3G007680' => 'csa', 'CsaV3_3G009710' => 'csa', 'CsaV3_3G034790' => 'csa', 'CsaV3_5G003750' => 'csa', 'CsaV3_6G036620' => 'csa', 'CSS0002288' => 'camsi', 'CSS0011250' => 'camsi', 'CSS0021619' => 'camsi', 'CSS0046701' => 'camsi', 'DCAR_006420' => 'dca', 'DCAR_006865' => 'dca', 'DCAR_008558' => 'dca', 'DCAR_028754' => 'dca', 'DCAR_028755' => 'dca', 'Dinv31218' => 'din', 'Dinv32371' => 'din', 'Dinv34250' => 'din', 'Dinv37156' => 'din', 'Dinv43704' => 'din', 'Duzib093G1811' => 'dzi', 'Duzib106G1622' => 'dzi', 'Duzib114G0504' => 'dzi', 'Duzib128G0338' => 'dzi', 'Duzib128G1577' => 'dzi', 'Duzib133G0104' => 'dzi', 'Duzib133G1080' => 'dzi', 'Duzib138G0324' => 'dzi', 'Duzib138G0394' => 'dzi', 'Duzib205G0122' => 'dzi', 'Duzib268G1020' => 'dzi', 'Duzib268G1359' => 'dzi', 'ECA232G3929' => 'eca', 'ECA236G2210' => 'eca', 'ECA236G2287' => 'eca', 'ECA240G4568' => 'eca', 'ECA247G0894' => 'eca', 'EL10Ac1g00200' => 'bvu', 'EL10Ac1g00886' => 'bvu', 'EL10As1g23091' => 'bvu', 'EL10As1g23092' => 'bvu', 'Eucgr.A01284' => 'egr', 'Eucgr.A01285' => 'egr', 'Eucgr.D02456' => 'egr', 'Eucgr.E00018' => 'egr', 'Eucgr.E01439' => 'egr', 'Eucgr.G02859' => 'egr', 'FAN01G0168' => 'fan', 'FAN01G0453' => 'fan', 'FAN01G2761' => 'fan', 'FAN02G1239' => 'fan', 'FAN03G0645' => 'fan', 'FAN03G2707' => 'fan', 'FAN03G2978' => 'fan', 'FAN04G0227' => 'fan', 'FAN06G0091' => 'fan', 'FAN06G1418' => 'fan', 'FAN06G1512' => 'fan', 'FAN06G1986' => 'fan', 'FAN06G2905' => 'fan', 'FAN06G4325' => 'fan', 'FAN08G0033' => 'fan', 'FAN09G0642' => 'fan', 'FAN10G1763' => 'fan', 'FAN10G2026' => 'fan', 'FAN10G2513' => 'fan', 'FAN10G3402' => 'fan', 'FAN10G3564' => 'fan', 'FAN10G3987' => 'fan', 'FAN13G1490' => 'fan', 'FAN14G5857' => 'fan', 'FAN18G1188' => 'fan', 'FvH4_5g00750' => 'fve', 'FvH4_6g13410' => 'fve', 'FvH4_7g11740' => 'fve', 'FvH4_7g17410' => 'fve', 'FvH4_7g18860' => 'fve', 'Glyma.01G099100' => 'gma', 'Glyma.01G142300' => 'gma', 'Glyma.03G025500' => 'gma', 'Glyma.03G069700' => 'gma', 'Glyma.03G260000' => 'gma', 'Glyma.09G269800' => 'gma', 'Glyma.10G208700' => 'gma', 'Glyma.18G220400' => 'gma', 'Glyma.20G182000' => 'gma', 'Gohir.A01G221726' => 'ghi', 'Gohir.A07G134600' => 'ghi', 'Gohir.A07G146000' => 'ghi', 'Gohir.A08G173900' => 'ghi', 'Gohir.A09G194900' => 'ghi', 'Gohir.A10G204100' => 'ghi', 'Gohir.A11G080600' => 'ghi', 'Gohir.A11G327500' => 'ghi', 'Gohir.A12G101800' => 'ghi', 'Gohir.D01G211200' => 'ghi', 'Gohir.D07G139200' => 'ghi', 'Gohir.D07G152100' => 'ghi', 'Gohir.D08G192600' => 'ghi', 'Gohir.D09G189200' => 'ghi', 'Gohir.D10G212000' => 'ghi', 'Gohir.D11G085200' => 'ghi', 'Gohir.D11G346400' => 'ghi', 'Gohir.D12G104800' => 'ghi', 'Gorai.001G151300' => 'gra', 'Gorai.001G174100' => 'gra', 'Gorai.002G257000' => 'gra', 'Gorai.004G202600' => 'gra', 'Gorai.007G090900' => 'gra', 'Gorai.007G376700' => 'gra', 'Gorai.008G114100' => 'gra', 'Gorai.011G237900' => 'gra', 'GSVIVG01005450001' => 'vvi', 'GSVIVG01016232001' => 'vvi', 'GSVIVG01026157001' => 'vvi', 'GSVIVG01027419001' => 'vvi', 'GSVIVG01027631001' => 'vvi', 'GSVIVG01034143001' => 'vvi', 'HanXRQChr03g0093921' => 'han', 'HanXRQChr04g0120001' => 'han', 'HanXRQChr04g0122561' => 'han', 'HanXRQChr09g0246851' => 'han', 'HanXRQChr10g0293311' => 'han', 'HanXRQChr13g0425231' => 'han', 'HanXRQChr16g0532571' => 'han', 'Haze_09050' => 'cav', 'Haze_15715' => 'cav', 'Haze_15716' => 'cav', 'Haze_16803' => 'cav', 'Haze_16850' => 'cav', 'Hma1.2p1_0301F.1_g118655' => 'hma', 'Hma1.2p1_0309F.1_g120590' => 'hma', 'Hma1.2p1_0936F.1_g238900' => 'hma', 'Hma1.2p1_3552F.1_g336740' => 'hma', 'HPP92_003520' => 'vpl', 'HPP92_006628' => 'vpl', 'HPP92_006645' => 'vpl', 'HPP92_014669' => 'vpl', 'HPP92_015077' => 'vpl', 'Hund16742' => 'sun', 'Hund17022' => 'sun', 'Lalb_Chr02g0152131' => 'lal', 'Lalb_Chr05g0225371' => 'lal', 'Lalb_Chr07g0189841' => 'lal', 'Lalb_Chr07g0192961' => 'lal', 'Lalb_Chr12g0208221' => 'lal', 'Lalb_Chr13g0291211' => 'lal', 'Lalb_Chr13g0291781' => 'lal', 'Lalb_Chr18g0044651' => 'lal', 'Lalb_Chr21g0313731' => 'lal', 'Lj1g0022533' => 'lja', 'Lj2A18T50' => 'lonja', 'Lj2A92G93' => 'lonja', 'Lj3A965T73' => 'lonja', 'Lj3g0000673' => 'lja', 'Lj3g0002666' => 'lja', 'Lj4g0016985' => 'lja', 'Lj5g0003625' => 'lja', 'Lj7A529G36' => 'lonja', 'Lj9A569T49' => 'lonja', 'Lj9A604T63' => 'lonja', 'Lsat_1_v5_gn_3_132060' => 'lsa', 'Lsat_1_v5_gn_4_68941' => 'lsa', 'Lsat_1_v5_gn_5_95580' => 'lsa', 'Lsat_1_v5_gn_7_161' => 'lsa', 'Lsat_1_v5_gn_7_7041' => 'lsa', 'Lsat_1_v5_gn_9_33481' => 'lsa', 'Lsat_1_v5_gn_9_68260' => 'lsa', 'Manes.01G073100' => 'mes', 'Manes.01G266300' => 'mes', 'Manes.02G033300' => 'mes', 'Manes.05G017900' => 'mes', 'Manes.05G046100' => 'mes', 'Manes.08G080900' => 'mes', 'Manes.10G049400' => 'mes', 'Mapoly0009s0186' => 'mpo', 'Mapoly0036s0118' => 'mpo', 'Mapoly0101s0046' => 'mpo', 'MBI04_g30218_MAGBIO' => 'mbi', 'MBI04_g35564_MAGBIO' => 'mbi', 'MBI12_g34011_MAGBIO' => 'mbi', 'MBI14_g04655_MAGBIO' => 'mbi', 'MCO07G653' => 'mco', 'MCO10G173' => 'mco', 'MD01G1087100' => 'mdo', 'MD01G1104200' => 'mdo', 'MD02G1205100' => 'mdo', 'MD04G1079200' => 'mdo', 'MD04G1131400' => 'mdo', 'MD07G1121600' => 'mdo', 'MD07G1157300' => 'mdo', 'MD07G1171000' => 'mdo', 'MD12G1144500' => 'mdo', 'Medtr1g094610' => 'mtr', 'Medtr4g021795' => 'mtr', 'Medtr4g023760' => 'mtr', 'Medtr7g118050' => 'mtr', 'MELO3C005582.2' => 'cme', 'MELO3C005989.2' => 'cme', 'MELO3C006192.2' => 'cme', 'MELO3C009248.2' => 'cme', 'MELO3C019817.2' => 'cme', 'Migut.B01625' => 'egut', 'Migut.B01915' => 'egut', 'Migut.F01721' => 'egut', 'Migut.J00314' => 'egut', 'MSTRG.20742' => 'ama', 'MSTRG.8134' => 'ama', 'Nitab4.5_0000096g0010' => 'nta', 'Nitab4.5_0000202g0030' => 'nta', 'Nitab4.5_0000216g0370' => 'nta', 'Nitab4.5_0000457g0230' => 'nta', 'Nitab4.5_0001702g0170' => 'nta', 'Nitab4.5_0003607g0010' => 'nta', 'Nitab4.5_0004917g0020' => 'nta', 'Nitab4.5_0007059g0010' => 'nta', 'Nitab4.5_0007184g0010' => 'nta', 'Nitab4.5_0007346g0020' => 'nta', 'Nn1g00410' => 'nnu', 'Nn1g01252' => 'nnu', 'Nn2g11168' => 'nnu', 'Nn2g13403' => 'nnu', 'Nn2g13760' => 'nnu', 'Nn4g26380' => 'nnu', 'Oeu000806.2' => 'oeu', 'Oeu005788.1' => 'oeu', 'Oeu006900.3' => 'oeu', 'Oeu007797.1' => 'oeu', 'Oeu011932.1' => 'oeu', 'Oeu022739.1' => 'oeu', 'Oeu037918.1' => 'oeu', 'Oeu055490.2' => 'oeu', 'Os01g0844400' => 'osa', 'Os02g0819100' => 'osa', 'Os03g0804300' => 'osa', 'Os05g0458000' => 'osa', 'Os07g0467800' => 'osa', 'Os12g0602200' => 'osa', 'Peaxi162Scf00013g03444' => 'pax', 'Peaxi162Scf00094g01120' => 'pax', 'Peaxi162Scf00191g01211' => 'pax', 'Peaxi162Scf00238g01110' => 'pax', 'Peaxi162Scf00330g00719' => 'pax', 'Peaxi162Scf00627g00018' => 'pax', 'PGR031G2686' => 'pgr', 'PGR042G0809' => 'pgr', 'PGR142G0193' => 'pgr', 'PGSC0003DMG400011066' => 'stu', 'PGSC0003DMG400012041' => 'stu', 'PGSC0003DMG400013678' => 'stu', 'PGSC0003DMG400023477' => 'stu', 'PGSC0003DMG400025956' => 'stu', 'PGSC0003DMG401019151' => 'stu', 'Phvul.006G116400' => 'pvu', 'Phvul.007G097300' => 'pvu', 'Phvul.010G015000' => 'pvu', 'Phvul.010G083900' => 'pvu', 'Potri.001G117100' => 'ptr', 'Potri.002G147300' => 'ptr', 'Potri.003G115600' => 'ptr', 'Potri.006G087400' => 'ptr', 'Potri.010G226100' => 'ptr', 'Potri.014G069200' => 'ptr', 'Potri.014G104000' => 'ptr', 'Potri.016G100200' => 'ptr', 'Pp3c10_20450' => 'ppa', 'Pp3c1_42400' => 'ppa', 'Pp3c3_24390' => 'ppa', 'Pp3c3_2860' => 'ppa', 'PRCOL_00003193' => 'pco', 'Prupe.2G144500' => 'ppe', 'Prupe.2G195700' => 'ppe', 'Prupe.2G209800' => 'ppe', 'Prupe.5G080000' => 'ppe', 'Prupe.6G257900' => 'ppe', 'Psat3g001160' => 'psa', 'Psat6g181880' => 'psa', 'Psat7g233720' => 'psa', 'PSO063G7587' => 'pso', 'PSO339G2145' => 'pso', 'PSO339G3369' => 'pso', 'PSO478G2747' => 'pso', 'PSO513G0140' => 'pso', 'PSO782G1614' => 'pso', 'PSO782G4889' => 'pso', 'PSO782G5485' => 'pso', 'PSO801G0241' => 'pso', 'QL07p048854' => 'qlo', 'QL08p046745' => 'qlo', 'QL08p052606' => 'qlo', 'QL08p053414' => 'qlo', 'QL08p054868' => 'qlo', 'RcHm_v2.0_Chr1g0350251' => 'rch', 'RcHm_v2.0_Chr1g0360851' => 'rch', 'RcHm_v2.0_Chr1g0362791' => 'rch', 'RcHm_v2.0_Chr3g0466281' => 'rch', 'RcHm_v2.0_Chr7g0201481' => 'rch', 'Rhsim01G0148600' => 'rsi', 'Rhsim05G0194400' => 'rsi', 'Rhsim07G0000700' => 'rsi', 'Rhsim07G0000800' => 'rsi', 'Rhsim07G0027900' => 'rsi', 'Rhsim09G0149500' => 'rsi', 'RhsimUnG0186900' => 'rsi', 'Sabra01G0089900' => 'sbr', 'Sabra02G0114700' => 'sbr', 'Sabra02G0116300' => 'sbr', 'Sabra03G0080100' => 'sbr', 'Sabra08G0024300' => 'sbr', 'Sabra10G0174300' => 'sbr', 'Sabra14G0048900' => 'sbr', 'Sabra14G0076500' => 'sbr', 'SalBow5G2513' => 'sbo', 'Sc01g0002300' => 'sci', 'Sc01g0004450' => 'sci', 'Sc06g0001680' => 'sci', 'Sc23g0003580' => 'sci', 'Sed0000913' => 'sed', 'Sed0001655' => 'sed', 'Sed0007745' => 'sed', 'Sed0010951' => 'sed', 'Sed0017599' => 'sed', 'Sed0021405' => 'sed', 'Sed0022810' => 'sed', 'SEGI_07099' => 'sgi', 'SEGI_11931' => 'sgi', 'SEGI_13187' => 'sgi', 'SEGI_29958' => 'sgi', 'SEGI_36351' => 'sgi', 'SGA_v2.0_scaffold126G33770' => 'sas', 'SGA_v2.0_scaffold153G37003' => 'sas', 'SGA_v2.0_scaffold2G01359' => 'sas', 'SGA_v2.0_scaffold5G03064' => 'sas', 'SGA_v2.0_scaffold95G28903' => 'sas', 'SHI12701' => 'shi', 'SHI26410' => 'shi', 'SHI38997' => 'shi', 'SHI53759' => 'shi', 'SHI53886' => 'shi', 'SHI54714' => 'shi', 'SMO011G0041' => 'smo', 'SMO146G0251' => 'smo', 'SMO160G0004' => 'smo', 'SMO174G0057' => 'smo', 'SMO244G0089' => 'smo', 'SMO296G0011' => 'smo', 'Solyc01g091280.3' => 'sly', 'Solyc05g047610.3' => 'sly', 'Solyc05g047640.3' => 'sly', 'Solyc05g055630.3' => 'sly', 'Solyc10g018160.2' => 'sly', 'Solyc10g084820.2' => 'sly', 'Solyc10g086565.2' => 'sly', 'Sopen01g037030' => 'spe', 'Sopen05g027920' => 'spe', 'Sopen05g034070' => 'spe', 'Sopen10g007260' => 'spe', 'Sopen10g034260' => 'spe', 'Sopen10g035950' => 'spe', 'Sp3g07710' => 'spa', 'Sp4g27420' => 'spa', 'Sp5g02450' => 'spa', 'Sp6g01280' => 'spa', 'Sp6g38480' => 'spa', 'Sp7g20780' => 'spa', 'TAR374G1413' => 'tar', 'TAR623G1777' => 'tar', 'TAR629G2370' => 'tar', 'TAR633G1759' => 'tar', 'TAR636G3387' => 'tar', 'THA.LOC104802447' => 'tha', 'THA.LOC104813916' => 'tha', 'THA.LOC104816423' => 'tha', 'THA.LOC104817246' => 'tha', 'THA.LOC104825895' => 'tha', 'Thecc.01G335200' => 'tca', 'Thecc.01G377400' => 'tca', 'Thecc.03G262200' => 'tca', 'Thecc.05G036800' => 'tca', 'Thecc.10G080500' => 'tca', 'Thecc.10G080800' => 'tca', 'Thhalv10001560m.g' => 'esa', 'Thhalv10006120m.g' => 'esa', 'Thhalv10014375m.g' => 'esa', 'Thhalv10021264m.g' => 'esa', 'Thhalv10028856m.g' => 'esa', 'TPR.G1914' => 'tpr', 'TPR.G4757' => 'tpr', 'TPR.G5595' => 'tpr', 'TWI14G0952' => 'twi', 'TWI14G1307' => 'twi', 'TWI38G2143' => 'twi', 'TWI59G0826' => 'twi', 'TWI77G0527' => 'twi', 'TWI81G0150' => 'twi', 'unitig_21.g21018' => 'ugi', 'unitig_26.g9725' => 'ugi', 'unitig_744.g24653' => 'ugi', 'unitig_749.g13778' => 'ugi', 'unitig_899.g15035' => 'ugi', 'vmacro04296' => 'vma', 'vmacro04852' => 'vma', 'vmacro13404' => 'vma', 'vmacro20169' => 'vma', 'vmacro21014' => 'vma', 'VMungo0331G0237' => 'vmu', 'VMungo0331G0706' => 'vmu', 'VMungo0331G1361' => 'vmu', 'VMungo0331G1489' => 'vmu', 'VMungo0540G1037' => 'vmu', 'VMungo0720G2487' => 'vmu', 'VMungo0720G2721' => 'vmu', 'Zm00001eb086860' => 'zma', 'Zm00001eb104760' => 'zma', 'Zm00001eb148220' => 'zma', 'Zm00001eb259030' => 'zma', 'Zm00001eb289590' => 'zma', 'Zm00001eb420150' => 'zma' ), 'gf_id' => 'HOM05D000968', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000968' ), 'data_identifier' => 'HOM05D000968', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000968', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p31690' => 'bna', 'A03p36040' => 'bna', 'A03p53730' => 'bna', 'A04p01410' => 'bna', 'A05p05420' => 'bna', 'A05p39630' => 'bna', 'A05p39640' => 'bna', 'A09p00970' => 'bna', 'A09p53060' => 'bna', 'A10p31890' => 'bna', 'Aa31LG10G15040' => 'aar', 'Aa31LG1G21090' => 'aar', 'Aa31LG1G26900' => 'aar', 'Aa31LG3G1820' => 'aar', 'Aa31LG5G1100' => 'aar', 'Aa31LG6G4740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2265' => 'aag', 'Actinidia07998' => 'ach', 'Actinidia11266' => 'ach', 'Actinidia12682' => 'ach', 'Actinidia26479' => 'ach', 'Actinidia31406' => 'ach', 'Actinidia32437' => 'ach', 'Actinidia38862' => 'ach', 'Ah.05g174230' => 'amhyb', 'Ah.05g179070' => 'amhyb', 'Ah.05g179090' => 'amhyb', 'Ah.12g059950' => 'amhyb', 'AL3G20480' => 'aly', 'AL4G44520' => 'aly', 'AL5G43110' => 'aly', 'AL6G13890' => 'aly', 'AL6G52620' => 'aly', 'AL7G30830' => 'aly', 'Aqoxy1G00899' => 'aox', 'Aqoxy5G04333' => 'aox', 'Aqoxy7G00641' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3IZ0NN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4EF6AW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W9P8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79GA3M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C43NQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFCU6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G95YVJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCHK29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LU1UG8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX91RN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGB4B1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8DA0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9H7JI' => 'arhy', 'AT3G09320' => 'ath', 'AT3G60800' => 'ath', 'AT4G00840' => 'ath', 'AT4G22750' => 'ath', 'AT5G04270' => 'ath', 'ATR0090G003' => 'atr', 'ATR0559G349' => 'atr', 'ATR0680G261' => 'atr', 'ATR0810G048' => 'atr', 'Atru.chr12.831' => 'acertr', 'Atru.chr5.303' => 'acertr', 'Atru.chr5.748' => 'acertr', 'Atru.chr8.1999' => 'acertr', 'Atru.chr9.1436' => 'acertr', 'AUR62004211' => 'cqu', 'AUR62004548' => 'cqu', 'AUR62013637' => 'cqu', 'AUR62022662' => 'cqu', 'AUR62025777' => 'cqu', 'AUR62042386' => 'cqu', 'BcaB01g02310' => 'bca', 'BcaB01g06062' => 'bca', 'BcaB02g08975' => 'bca', 'BcaB02g08980' => 'bca', 'BcaC01g04228' => 'bca', 'BcaC01g06830' => 'bca', 'BcaC02g10186' => 'bca', 'BcaC02g12214' => 'bca', 'BcaC04g24101' => 'bca', 'BcaC05g29520' => 'bca', 'BcaC05g29661' => 'bca', 'BcaC06g32130' => 'bca', 'BcaC06g32131' => 'bca', 'BcaC07g40601' => 'bca', 'BcaC07g42641' => 'bca', 'BcaNung01038' => 'bca', 'BcaNung01676' => 'bca', 'BcaNung02480' => 'bca', 'BcaNung07376' => 'bca', 'BolC3t16146H' => 'bol', 'BolC3t16637H' => 'bol', 'BolC4t22257H' => 'bol', 'BolC4t24728H' => 'bol', 'BolC5t34517H' => 'bol', 'BolC7t45703H' => 'bol', 'BolC8t51166H' => 'bol', 'BolC9t53038H' => 'bol', 'BolC9t60000H' => 'bol', 'BraA01t01345Z' => 'bra', 'BraA01t01346Z' => 'bra', 'BraA01t01348Z' => 'bra', 'BraA03t12347Z' => 'bra', 'BraA03t12775Z' => 'bra', 'BraA03t14439Z' => 'bra', 'BraA04t15860Z' => 'bra', 'BraA05t19511Z' => 'bra', 'BraA05t22746Z' => 'bra', 'BraA09t35767Z' => 'bra', 'BraA09t40732Z' => 'bra', 'BraA10t45233Z' => 'bra', 'C03p38720' => 'bna', 'C03p43680' => 'bna', 'C04p06350' => 'bna', 'C04p31800' => 'bna', 'C05p58680' => 'bna', 'C07p52110' => 'bna', 'C08p35760' => 'bna', 'C09p01050' => 'bna', 'C09p72600' => 'bna', 'CAN.G106.2' => 'can', 'CAN.G1482.1' => 'can', 'CAN.G324.12' => 'can', 'CAN.G388.20' => 'can', 'CAN.G412.7' => 'can', 'CAN.G694.32' => 'can', 'CAN.G92.12' => 'can', 'CANSAT11G2353' => 'cansat', 'CANSAT21G1398' => 'cansat', 'CANSAT56G2456' => 'cansat', 'CANSAT56G3031' => 'cansat', 'CANSAT56G4539' => 'cansat', 'CARHR083680' => 'chi', 'CARHR171190' => 'chi', 'CARHR209010' => 'chi', 'CARHR229680' => 'chi', 'CARHR249490' => 'chi', 'Carub.0003s0844' => 'cru', 'Carub.0005s2755' => 'cru', 'Carub.0006s0322' => 'cru', 'Carub.0006s3586' => 'cru', 'Carub.0007s1855' => 'cru', 'Ca_07808_v3' => 'car', 'Ca_09535_v3' => 'car', 'Ca_10548_v3' => 'car', 'Ca_19913_v3' => 'car', 'Ca_19916_v3' => 'car', 'Ca_19975_v3' => 'car', 'CBR_g22876' => 'cbr', 'CBR_g22879' => 'cbr', 'CBR_g38491' => 'cbr', 'CBR_g54185' => 'cbr', 'CBR_g54190' => 'cbr', 'Cc02_g11020' => 'ccan', 'Cc02_g23920' => 'ccan', 'Cc02_g39860' => 'ccan', 'Cc02_g39870' => 'ccan', 'Cc03_g06760' => 'ccan', 'Cc06_g02450' => 'ccan', 'Cc09_g09450' => 'ccan', 'CDE02G1959' => 'cde', 'CDE04G0600' => 'cde', 'CDE07G1996' => 'cde', 'CDE07G2078' => 'cde', 'CDE11G0611' => 'cde', 'Cfa001683' => 'cfa', 'Cfa001734' => 'cfa', 'Cfa001737' => 'cfa', 'Cfa003751' => 'cfa', 'Cfa012019' => 'cfa', 'Cfa017353' => 'cfa', 'Cfa017732' => 'cfa', 'Cfa022464' => 'cfa', 'Ciclev10012400m.g' => 'ccl', 'Ciclev10021242m.g' => 'ccl', 'Ciclev10021302m.g' => 'ccl', 'Ciclev10021463m.g' => 'ccl', 'Ciclev10032359m.g' => 'ccl', 'CiPaw.01G081000' => 'cil', 'CiPaw.01G262500' => 'cil', 'CiPaw.01G269800' => 'cil', 'CiPaw.02G168400' => 'cil', 'CiPaw.05G119500' => 'cil', 'CiPaw.11G147300' => 'cil', 'ClCG01G003630' => 'cla', 'ClCG05G000510' => 'cla', 'ClCG05G002300' => 'cla', 'ClCG08G007650' => 'cla', 'ClCG10G021250' => 'cla', 'COL.COLO4_06218' => 'col', 'COL.COLO4_12538' => 'col', 'COL.COLO4_14775' => 'col', 'COL.COLO4_23875' => 'col', 'Cpa.g.sc141.16' => 'cpa', 'Cpa.g.sc169.16' => 'cpa', 'Cpa.g.sc244.4' => 'cpa', 'Cpa.g.sc244.5' => 'cpa', 'Cpa.g.sc29.87' => 'cpa', 'Cpa.g.sc53.115' => 'cpa', 'Cre03.g207502' => 'cre', 'Cre06.g277000' => 'cre', 'Cre09.g394050' => 'cre', 'CsaV3_3G007680' => 'csa', 'CsaV3_3G009710' => 'csa', 'CsaV3_3G034790' => 'csa', 'CsaV3_5G003750' => 'csa', 'CsaV3_6G036620' => 'csa', 'CSS0002288' => 'camsi', 'CSS0011250' => 'camsi', 'CSS0021619' => 'camsi', 'CSS0046701' => 'camsi', 'DCAR_006420' => 'dca', 'DCAR_006865' => 'dca', 'DCAR_008558' => 'dca', 'DCAR_028754' => 'dca', 'DCAR_028755' => 'dca', 'Dinv31218' => 'din', 'Dinv32371' => 'din', 'Dinv34250' => 'din', 'Dinv37156' => 'din', 'Dinv43704' => 'din', 'Duzib093G1811' => 'dzi', 'Duzib106G1622' => 'dzi', 'Duzib114G0504' => 'dzi', 'Duzib128G0338' => 'dzi', 'Duzib128G1577' => 'dzi', 'Duzib133G0104' => 'dzi', 'Duzib133G1080' => 'dzi', 'Duzib138G0324' => 'dzi', 'Duzib138G0394' => 'dzi', 'Duzib205G0122' => 'dzi', 'Duzib268G1020' => 'dzi', 'Duzib268G1359' => 'dzi', 'ECA232G3929' => 'eca', 'ECA236G2210' => 'eca', 'ECA236G2287' => 'eca', 'ECA240G4568' => 'eca', 'ECA247G0894' => 'eca', 'EL10Ac1g00200' => 'bvu', 'EL10Ac1g00886' => 'bvu', 'EL10As1g23091' => 'bvu', 'EL10As1g23092' => 'bvu', 'Eucgr.A01284' => 'egr', 'Eucgr.A01285' => 'egr', 'Eucgr.D02456' => 'egr', 'Eucgr.E00018' => 'egr', 'Eucgr.E01439' => 'egr', 'Eucgr.G02859' => 'egr', 'FAN01G0168' => 'fan', 'FAN01G0453' => 'fan', 'FAN01G2761' => 'fan', 'FAN02G1239' => 'fan', 'FAN03G0645' => 'fan', 'FAN03G2707' => 'fan', 'FAN03G2978' => 'fan', 'FAN04G0227' => 'fan', 'FAN06G0091' => 'fan', 'FAN06G1418' => 'fan', 'FAN06G1512' => 'fan', 'FAN06G1986' => 'fan', 'FAN06G2905' => 'fan', 'FAN06G4325' => 'fan', 'FAN08G0033' => 'fan', 'FAN09G0642' => 'fan', 'FAN10G1763' => 'fan', 'FAN10G2026' => 'fan', 'FAN10G2513' => 'fan', 'FAN10G3402' => 'fan', 'FAN10G3564' => 'fan', 'FAN10G3987' => 'fan', 'FAN13G1490' => 'fan', 'FAN14G5857' => 'fan', 'FAN18G1188' => 'fan', 'FvH4_5g00750' => 'fve', 'FvH4_6g13410' => 'fve', 'FvH4_7g11740' => 'fve', 'FvH4_7g17410' => 'fve', 'FvH4_7g18860' => 'fve', 'Glyma.01G099100' => 'gma', 'Glyma.01G142300' => 'gma', 'Glyma.03G025500' => 'gma', 'Glyma.03G069700' => 'gma', 'Glyma.03G260000' => 'gma', 'Glyma.09G269800' => 'gma', 'Glyma.10G208700' => 'gma', 'Glyma.18G220400' => 'gma', 'Glyma.20G182000' => 'gma', 'Gohir.A01G221726' => 'ghi', 'Gohir.A07G134600' => 'ghi', 'Gohir.A07G146000' => 'ghi', 'Gohir.A08G173900' => 'ghi', 'Gohir.A09G194900' => 'ghi', 'Gohir.A10G204100' => 'ghi', 'Gohir.A11G080600' => 'ghi', 'Gohir.A11G327500' => 'ghi', 'Gohir.A12G101800' => 'ghi', 'Gohir.D01G211200' => 'ghi', 'Gohir.D07G139200' => 'ghi', 'Gohir.D07G152100' => 'ghi', 'Gohir.D08G192600' => 'ghi', 'Gohir.D09G189200' => 'ghi', 'Gohir.D10G212000' => 'ghi', 'Gohir.D11G085200' => 'ghi', 'Gohir.D11G346400' => 'ghi', 'Gohir.D12G104800' => 'ghi', 'Gorai.001G151300' => 'gra', 'Gorai.001G174100' => 'gra', 'Gorai.002G257000' => 'gra', 'Gorai.004G202600' => 'gra', 'Gorai.007G090900' => 'gra', 'Gorai.007G376700' => 'gra', 'Gorai.008G114100' => 'gra', 'Gorai.011G237900' => 'gra', 'GSVIVG01005450001' => 'vvi', 'GSVIVG01016232001' => 'vvi', 'GSVIVG01026157001' => 'vvi', 'GSVIVG01027419001' => 'vvi', 'GSVIVG01027631001' => 'vvi', 'GSVIVG01034143001' => 'vvi', 'HanXRQChr03g0093921' => 'han', 'HanXRQChr04g0120001' => 'han', 'HanXRQChr04g0122561' => 'han', 'HanXRQChr09g0246851' => 'han', 'HanXRQChr10g0293311' => 'han', 'HanXRQChr13g0425231' => 'han', 'HanXRQChr16g0532571' => 'han', 'Haze_09050' => 'cav', 'Haze_15715' => 'cav', 'Haze_15716' => 'cav', 'Haze_16803' => 'cav', 'Haze_16850' => 'cav', 'Hma1.2p1_0301F.1_g118655' => 'hma', 'Hma1.2p1_0309F.1_g120590' => 'hma', 'Hma1.2p1_0936F.1_g238900' => 'hma', 'Hma1.2p1_3552F.1_g336740' => 'hma', 'HPP92_003520' => 'vpl', 'HPP92_006628' => 'vpl', 'HPP92_006645' => 'vpl', 'HPP92_014669' => 'vpl', 'HPP92_015077' => 'vpl', 'Hund16742' => 'sun', 'Hund17022' => 'sun', 'Lalb_Chr02g0152131' => 'lal', 'Lalb_Chr05g0225371' => 'lal', 'Lalb_Chr07g0189841' => 'lal', 'Lalb_Chr07g0192961' => 'lal', 'Lalb_Chr12g0208221' => 'lal', 'Lalb_Chr13g0291211' => 'lal', 'Lalb_Chr13g0291781' => 'lal', 'Lalb_Chr18g0044651' => 'lal', 'Lalb_Chr21g0313731' => 'lal', 'Lj1g0022533' => 'lja', 'Lj2A18T50' => 'lonja', 'Lj2A92G93' => 'lonja', 'Lj3A965T73' => 'lonja', 'Lj3g0000673' => 'lja', 'Lj3g0002666' => 'lja', 'Lj4g0016985' => 'lja', 'Lj5g0003625' => 'lja', 'Lj7A529G36' => 'lonja', 'Lj9A569T49' => 'lonja', 'Lj9A604T63' => 'lonja', 'Lsat_1_v5_gn_3_132060' => 'lsa', 'Lsat_1_v5_gn_4_68941' => 'lsa', 'Lsat_1_v5_gn_5_95580' => 'lsa', 'Lsat_1_v5_gn_7_161' => 'lsa', 'Lsat_1_v5_gn_7_7041' => 'lsa', 'Lsat_1_v5_gn_9_33481' => 'lsa', 'Lsat_1_v5_gn_9_68260' => 'lsa', 'Manes.01G073100' => 'mes', 'Manes.01G266300' => 'mes', 'Manes.02G033300' => 'mes', 'Manes.05G017900' => 'mes', 'Manes.05G046100' => 'mes', 'Manes.08G080900' => 'mes', 'Manes.10G049400' => 'mes', 'Mapoly0009s0186' => 'mpo', 'Mapoly0036s0118' => 'mpo', 'Mapoly0101s0046' => 'mpo', 'MBI04_g30218_MAGBIO' => 'mbi', 'MBI04_g35564_MAGBIO' => 'mbi', 'MBI12_g34011_MAGBIO' => 'mbi', 'MBI14_g04655_MAGBIO' => 'mbi', 'MCO07G653' => 'mco', 'MCO10G173' => 'mco', 'MD01G1087100' => 'mdo', 'MD01G1104200' => 'mdo', 'MD02G1205100' => 'mdo', 'MD04G1079200' => 'mdo', 'MD04G1131400' => 'mdo', 'MD07G1121600' => 'mdo', 'MD07G1157300' => 'mdo', 'MD07G1171000' => 'mdo', 'MD12G1144500' => 'mdo', 'Medtr1g094610' => 'mtr', 'Medtr4g021795' => 'mtr', 'Medtr4g023760' => 'mtr', 'Medtr7g118050' => 'mtr', 'MELO3C005582.2' => 'cme', 'MELO3C005989.2' => 'cme', 'MELO3C006192.2' => 'cme', 'MELO3C009248.2' => 'cme', 'MELO3C019817.2' => 'cme', 'Migut.B01625' => 'egut', 'Migut.B01915' => 'egut', 'Migut.F01721' => 'egut', 'Migut.J00314' => 'egut', 'MSTRG.20742' => 'ama', 'MSTRG.8134' => 'ama', 'Nitab4.5_0000096g0010' => 'nta', 'Nitab4.5_0000202g0030' => 'nta', 'Nitab4.5_0000216g0370' => 'nta', 'Nitab4.5_0000457g0230' => 'nta', 'Nitab4.5_0001702g0170' => 'nta', 'Nitab4.5_0003607g0010' => 'nta', 'Nitab4.5_0004917g0020' => 'nta', 'Nitab4.5_0007059g0010' => 'nta', 'Nitab4.5_0007184g0010' => 'nta', 'Nitab4.5_0007346g0020' => 'nta', 'Nn1g00410' => 'nnu', 'Nn1g01252' => 'nnu', 'Nn2g11168' => 'nnu', 'Nn2g13403' => 'nnu', 'Nn2g13760' => 'nnu', 'Nn4g26380' => 'nnu', 'Oeu000806.2' => 'oeu', 'Oeu005788.1' => 'oeu', 'Oeu006900.3' => 'oeu', 'Oeu007797.1' => 'oeu', 'Oeu011932.1' => 'oeu', 'Oeu022739.1' => 'oeu', 'Oeu037918.1' => 'oeu', 'Oeu055490.2' => 'oeu', 'Os01g0844400' => 'osa', 'Os02g0819100' => 'osa', 'Os03g0804300' => 'osa', 'Os05g0458000' => 'osa', 'Os07g0467800' => 'osa', 'Os12g0602200' => 'osa', 'Peaxi162Scf00013g03444' => 'pax', 'Peaxi162Scf00094g01120' => 'pax', 'Peaxi162Scf00191g01211' => 'pax', 'Peaxi162Scf00238g01110' => 'pax', 'Peaxi162Scf00330g00719' => 'pax', 'Peaxi162Scf00627g00018' => 'pax', 'PGR031G2686' => 'pgr', 'PGR042G0809' => 'pgr', 'PGR142G0193' => 'pgr', 'PGSC0003DMG400011066' => 'stu', 'PGSC0003DMG400012041' => 'stu', 'PGSC0003DMG400013678' => 'stu', 'PGSC0003DMG400023477' => 'stu', 'PGSC0003DMG400025956' => 'stu', 'PGSC0003DMG401019151' => 'stu', 'Phvul.006G116400' => 'pvu', 'Phvul.007G097300' => 'pvu', 'Phvul.010G015000' => 'pvu', 'Phvul.010G083900' => 'pvu', 'Potri.001G117100' => 'ptr', 'Potri.002G147300' => 'ptr', 'Potri.003G115600' => 'ptr', 'Potri.006G087400' => 'ptr', 'Potri.010G226100' => 'ptr', 'Potri.014G069200' => 'ptr', 'Potri.014G104000' => 'ptr', 'Potri.016G100200' => 'ptr', 'Pp3c10_20450' => 'ppa', 'Pp3c1_42400' => 'ppa', 'Pp3c3_24390' => 'ppa', 'Pp3c3_2860' => 'ppa', 'PRCOL_00003193' => 'pco', 'Prupe.2G144500' => 'ppe', 'Prupe.2G195700' => 'ppe', 'Prupe.2G209800' => 'ppe', 'Prupe.5G080000' => 'ppe', 'Prupe.6G257900' => 'ppe', 'Psat3g001160' => 'psa', 'Psat6g181880' => 'psa', 'Psat7g233720' => 'psa', 'PSO063G7587' => 'pso', 'PSO339G2145' => 'pso', 'PSO339G3369' => 'pso', 'PSO478G2747' => 'pso', 'PSO513G0140' => 'pso', 'PSO782G1614' => 'pso', 'PSO782G4889' => 'pso', 'PSO782G5485' => 'pso', 'PSO801G0241' => 'pso', 'QL07p048854' => 'qlo', 'QL08p046745' => 'qlo', 'QL08p052606' => 'qlo', 'QL08p053414' => 'qlo', 'QL08p054868' => 'qlo', 'RcHm_v2.0_Chr1g0350251' => 'rch', 'RcHm_v2.0_Chr1g0360851' => 'rch', 'RcHm_v2.0_Chr1g0362791' => 'rch', 'RcHm_v2.0_Chr3g0466281' => 'rch', 'RcHm_v2.0_Chr7g0201481' => 'rch', 'Rhsim01G0148600' => 'rsi', 'Rhsim05G0194400' => 'rsi', 'Rhsim07G0000700' => 'rsi', 'Rhsim07G0000800' => 'rsi', 'Rhsim07G0027900' => 'rsi', 'Rhsim09G0149500' => 'rsi', 'RhsimUnG0186900' => 'rsi', 'Sabra01G0089900' => 'sbr', 'Sabra02G0114700' => 'sbr', 'Sabra02G0116300' => 'sbr', 'Sabra03G0080100' => 'sbr', 'Sabra08G0024300' => 'sbr', 'Sabra10G0174300' => 'sbr', 'Sabra14G0048900' => 'sbr', 'Sabra14G0076500' => 'sbr', 'SalBow5G2513' => 'sbo', 'Sc01g0002300' => 'sci', 'Sc01g0004450' => 'sci', 'Sc06g0001680' => 'sci', 'Sc23g0003580' => 'sci', 'Sed0000913' => 'sed', 'Sed0001655' => 'sed', 'Sed0007745' => 'sed', 'Sed0010951' => 'sed', 'Sed0017599' => 'sed', 'Sed0021405' => 'sed', 'Sed0022810' => 'sed', 'SEGI_07099' => 'sgi', 'SEGI_11931' => 'sgi', 'SEGI_13187' => 'sgi', 'SEGI_29958' => 'sgi', 'SEGI_36351' => 'sgi', 'SGA_v2.0_scaffold126G33770' => 'sas', 'SGA_v2.0_scaffold153G37003' => 'sas', 'SGA_v2.0_scaffold2G01359' => 'sas', 'SGA_v2.0_scaffold5G03064' => 'sas', 'SGA_v2.0_scaffold95G28903' => 'sas', 'SHI12701' => 'shi', 'SHI26410' => 'shi', 'SHI38997' => 'shi', 'SHI53759' => 'shi', 'SHI53886' => 'shi', 'SHI54714' => 'shi', 'SMO011G0041' => 'smo', 'SMO146G0251' => 'smo', 'SMO160G0004' => 'smo', 'SMO174G0057' => 'smo', 'SMO244G0089' => 'smo', 'SMO296G0011' => 'smo', 'Solyc01g091280.3' => 'sly', 'Solyc05g047610.3' => 'sly', 'Solyc05g047640.3' => 'sly', 'Solyc05g055630.3' => 'sly', 'Solyc10g018160.2' => 'sly', 'Solyc10g084820.2' => 'sly', 'Solyc10g086565.2' => 'sly', 'Sopen01g037030' => 'spe', 'Sopen05g027920' => 'spe', 'Sopen05g034070' => 'spe', 'Sopen10g007260' => 'spe', 'Sopen10g034260' => 'spe', 'Sopen10g035950' => 'spe', 'Sp3g07710' => 'spa', 'Sp4g27420' => 'spa', 'Sp5g02450' => 'spa', 'Sp6g01280' => 'spa', 'Sp6g38480' => 'spa', 'Sp7g20780' => 'spa', 'TAR374G1413' => 'tar', 'TAR623G1777' => 'tar', 'TAR629G2370' => 'tar', 'TAR633G1759' => 'tar', 'TAR636G3387' => 'tar', 'THA.LOC104802447' => 'tha', 'THA.LOC104813916' => 'tha', 'THA.LOC104816423' => 'tha', 'THA.LOC104817246' => 'tha', 'THA.LOC104825895' => 'tha', 'Thecc.01G335200' => 'tca', 'Thecc.01G377400' => 'tca', 'Thecc.03G262200' => 'tca', 'Thecc.05G036800' => 'tca', 'Thecc.10G080500' => 'tca', 'Thecc.10G080800' => 'tca', 'Thhalv10001560m.g' => 'esa', 'Thhalv10006120m.g' => 'esa', 'Thhalv10014375m.g' => 'esa', 'Thhalv10021264m.g' => 'esa', 'Thhalv10028856m.g' => 'esa', 'TPR.G1914' => 'tpr', 'TPR.G4757' => 'tpr', 'TPR.G5595' => 'tpr', 'TWI14G0952' => 'twi', 'TWI14G1307' => 'twi', 'TWI38G2143' => 'twi', 'TWI59G0826' => 'twi', 'TWI77G0527' => 'twi', 'TWI81G0150' => 'twi', 'unitig_21.g21018' => 'ugi', 'unitig_26.g9725' => 'ugi', 'unitig_744.g24653' => 'ugi', 'unitig_749.g13778' => 'ugi', 'unitig_899.g15035' => 'ugi', 'vmacro04296' => 'vma', 'vmacro04852' => 'vma', 'vmacro13404' => 'vma', 'vmacro20169' => 'vma', 'vmacro21014' => 'vma', 'VMungo0331G0237' => 'vmu', 'VMungo0331G0706' => 'vmu', 'VMungo0331G1361' => 'vmu', 'VMungo0331G1489' => 'vmu', 'VMungo0540G1037' => 'vmu', 'VMungo0720G2487' => 'vmu', 'VMungo0720G2721' => 'vmu', 'Zm00001eb086860' => 'zma', 'Zm00001eb104760' => 'zma', 'Zm00001eb148220' => 'zma', 'Zm00001eb259030' => 'zma', 'Zm00001eb289590' => 'zma', 'Zm00001eb420150' => 'zma' ) $gf_id = 'HOM05D000968' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000968' ) $data_identifier = 'HOM05D000968' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 19, 'bol' => (int) 9, 'bra' => (int) 12, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 5, 'ccan' => (int) 7, 'cde' => (int) 5, 'cfa' => (int) 8, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 4, 'dca' => (int) 5, 'din' => (int) 5, 'dzi' => (int) 12, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 25, 'fve' => (int) 5, 'gma' => (int) 9, 'ghi' => (int) 18, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 7, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 5, 'sun' => (int) 2, 'lal' => (int) 9, 'lja' => (int) 5, 'lonja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 9, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 2, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 3, 'stu' => (int) 6, 'pvu' => (int) 4, 'ptr' => (int) 8, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 3, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 1, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 5, 'sas' => (int) 5, 'shi' => (int) 6, 'smo' => (int) 6, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 3, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420150' $species_info = array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ) $local_species = 'tar' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000968', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p31690' => 'bna', 'A03p36040' => 'bna', 'A03p53730' => 'bna', 'A04p01410' => 'bna', 'A05p05420' => 'bna', 'A05p39630' => 'bna', 'A05p39640' => 'bna', 'A09p00970' => 'bna', 'A09p53060' => 'bna', 'A10p31890' => 'bna', 'Aa31LG10G15040' => 'aar', 'Aa31LG1G21090' => 'aar', 'Aa31LG1G26900' => 'aar', 'Aa31LG3G1820' => 'aar', 'Aa31LG5G1100' => 'aar', 'Aa31LG6G4740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2265' => 'aag', 'Actinidia07998' => 'ach', 'Actinidia11266' => 'ach', 'Actinidia12682' => 'ach', 'Actinidia26479' => 'ach', 'Actinidia31406' => 'ach', 'Actinidia32437' => 'ach', 'Actinidia38862' => 'ach', 'Ah.05g174230' => 'amhyb', 'Ah.05g179070' => 'amhyb', 'Ah.05g179090' => 'amhyb', 'Ah.12g059950' => 'amhyb', 'AL3G20480' => 'aly', 'AL4G44520' => 'aly', 'AL5G43110' => 'aly', 'AL6G13890' => 'aly', 'AL6G52620' => 'aly', 'AL7G30830' => 'aly', 'Aqoxy1G00899' => 'aox', 'Aqoxy5G04333' => 'aox', 'Aqoxy7G00641' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3IZ0NN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4EF6AW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W9P8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79GA3M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C43NQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFCU6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G95YVJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCHK29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LU1UG8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX91RN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGB4B1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8DA0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9H7JI' => 'arhy', 'AT3G09320' => 'ath', 'AT3G60800' => 'ath', 'AT4G00840' => 'ath', 'AT4G22750' => 'ath', 'AT5G04270' => 'ath', 'ATR0090G003' => 'atr', 'ATR0559G349' => 'atr', 'ATR0680G261' => 'atr', 'ATR0810G048' => 'atr', 'Atru.chr12.831' => 'acertr', 'Atru.chr5.303' => 'acertr', 'Atru.chr5.748' => 'acertr', 'Atru.chr8.1999' => 'acertr', 'Atru.chr9.1436' => 'acertr', 'AUR62004211' => 'cqu', 'AUR62004548' => 'cqu', 'AUR62013637' => 'cqu', 'AUR62022662' => 'cqu', 'AUR62025777' => 'cqu', 'AUR62042386' => 'cqu', 'BcaB01g02310' => 'bca', 'BcaB01g06062' => 'bca', 'BcaB02g08975' => 'bca', 'BcaB02g08980' => 'bca', 'BcaC01g04228' => 'bca', 'BcaC01g06830' => 'bca', 'BcaC02g10186' => 'bca', 'BcaC02g12214' => 'bca', 'BcaC04g24101' => 'bca', 'BcaC05g29520' => 'bca', 'BcaC05g29661' => 'bca', 'BcaC06g32130' => 'bca', 'BcaC06g32131' => 'bca', 'BcaC07g40601' => 'bca', 'BcaC07g42641' => 'bca', 'BcaNung01038' => 'bca', 'BcaNung01676' => 'bca', 'BcaNung02480' => 'bca', 'BcaNung07376' => 'bca', 'BolC3t16146H' => 'bol', 'BolC3t16637H' => 'bol', 'BolC4t22257H' => 'bol', 'BolC4t24728H' => 'bol', 'BolC5t34517H' => 'bol', 'BolC7t45703H' => 'bol', 'BolC8t51166H' => 'bol', 'BolC9t53038H' => 'bol', 'BolC9t60000H' => 'bol', 'BraA01t01345Z' => 'bra', 'BraA01t01346Z' => 'bra', 'BraA01t01348Z' => 'bra', 'BraA03t12347Z' => 'bra', 'BraA03t12775Z' => 'bra', 'BraA03t14439Z' => 'bra', 'BraA04t15860Z' => 'bra', 'BraA05t19511Z' => 'bra', 'BraA05t22746Z' => 'bra', 'BraA09t35767Z' => 'bra', 'BraA09t40732Z' => 'bra', 'BraA10t45233Z' => 'bra', 'C03p38720' => 'bna', 'C03p43680' => 'bna', 'C04p06350' => 'bna', 'C04p31800' => 'bna', 'C05p58680' => 'bna', 'C07p52110' => 'bna', 'C08p35760' => 'bna', 'C09p01050' => 'bna', 'C09p72600' => 'bna', 'CAN.G106.2' => 'can', 'CAN.G1482.1' => 'can', 'CAN.G324.12' => 'can', 'CAN.G388.20' => 'can', 'CAN.G412.7' => 'can', 'CAN.G694.32' => 'can', 'CAN.G92.12' => 'can', 'CANSAT11G2353' => 'cansat', 'CANSAT21G1398' => 'cansat', 'CANSAT56G2456' => 'cansat', 'CANSAT56G3031' => 'cansat', 'CANSAT56G4539' => 'cansat', 'CARHR083680' => 'chi', 'CARHR171190' => 'chi', 'CARHR209010' => 'chi', 'CARHR229680' => 'chi', 'CARHR249490' => 'chi', 'Carub.0003s0844' => 'cru', 'Carub.0005s2755' => 'cru', 'Carub.0006s0322' => 'cru', 'Carub.0006s3586' => 'cru', 'Carub.0007s1855' => 'cru', 'Ca_07808_v3' => 'car', 'Ca_09535_v3' => 'car', 'Ca_10548_v3' => 'car', 'Ca_19913_v3' => 'car', 'Ca_19916_v3' => 'car', 'Ca_19975_v3' => 'car', 'CBR_g22876' => 'cbr', 'CBR_g22879' => 'cbr', 'CBR_g38491' => 'cbr', 'CBR_g54185' => 'cbr', 'CBR_g54190' => 'cbr', 'Cc02_g11020' => 'ccan', 'Cc02_g23920' => 'ccan', 'Cc02_g39860' => 'ccan', 'Cc02_g39870' => 'ccan', 'Cc03_g06760' => 'ccan', 'Cc06_g02450' => 'ccan', 'Cc09_g09450' => 'ccan', 'CDE02G1959' => 'cde', 'CDE04G0600' => 'cde', 'CDE07G1996' => 'cde', 'CDE07G2078' => 'cde', 'CDE11G0611' => 'cde', 'Cfa001683' => 'cfa', 'Cfa001734' => 'cfa', 'Cfa001737' => 'cfa', 'Cfa003751' => 'cfa', 'Cfa012019' => 'cfa', 'Cfa017353' => 'cfa', 'Cfa017732' => 'cfa', 'Cfa022464' => 'cfa', 'Ciclev10012400m.g' => 'ccl', 'Ciclev10021242m.g' => 'ccl', 'Ciclev10021302m.g' => 'ccl', 'Ciclev10021463m.g' => 'ccl', 'Ciclev10032359m.g' => 'ccl', 'CiPaw.01G081000' => 'cil', 'CiPaw.01G262500' => 'cil', 'CiPaw.01G269800' => 'cil', 'CiPaw.02G168400' => 'cil', 'CiPaw.05G119500' => 'cil', 'CiPaw.11G147300' => 'cil', 'ClCG01G003630' => 'cla', 'ClCG05G000510' => 'cla', 'ClCG05G002300' => 'cla', 'ClCG08G007650' => 'cla', 'ClCG10G021250' => 'cla', 'COL.COLO4_06218' => 'col', 'COL.COLO4_12538' => 'col', 'COL.COLO4_14775' => 'col', 'COL.COLO4_23875' => 'col', 'Cpa.g.sc141.16' => 'cpa', 'Cpa.g.sc169.16' => 'cpa', 'Cpa.g.sc244.4' => 'cpa', 'Cpa.g.sc244.5' => 'cpa', 'Cpa.g.sc29.87' => 'cpa', 'Cpa.g.sc53.115' => 'cpa', 'Cre03.g207502' => 'cre', 'Cre06.g277000' => 'cre', 'Cre09.g394050' => 'cre', 'CsaV3_3G007680' => 'csa', 'CsaV3_3G009710' => 'csa', 'CsaV3_3G034790' => 'csa', 'CsaV3_5G003750' => 'csa', 'CsaV3_6G036620' => 'csa', 'CSS0002288' => 'camsi', 'CSS0011250' => 'camsi', 'CSS0021619' => 'camsi', 'CSS0046701' => 'camsi', 'DCAR_006420' => 'dca', 'DCAR_006865' => 'dca', 'DCAR_008558' => 'dca', 'DCAR_028754' => 'dca', 'DCAR_028755' => 'dca', 'Dinv31218' => 'din', 'Dinv32371' => 'din', 'Dinv34250' => 'din', 'Dinv37156' => 'din', 'Dinv43704' => 'din', 'Duzib093G1811' => 'dzi', 'Duzib106G1622' => 'dzi', 'Duzib114G0504' => 'dzi', 'Duzib128G0338' => 'dzi', 'Duzib128G1577' => 'dzi', 'Duzib133G0104' => 'dzi', 'Duzib133G1080' => 'dzi', 'Duzib138G0324' => 'dzi', 'Duzib138G0394' => 'dzi', 'Duzib205G0122' => 'dzi', 'Duzib268G1020' => 'dzi', 'Duzib268G1359' => 'dzi', 'ECA232G3929' => 'eca', 'ECA236G2210' => 'eca', 'ECA236G2287' => 'eca', 'ECA240G4568' => 'eca', 'ECA247G0894' => 'eca', 'EL10Ac1g00200' => 'bvu', 'EL10Ac1g00886' => 'bvu', 'EL10As1g23091' => 'bvu', 'EL10As1g23092' => 'bvu', 'Eucgr.A01284' => 'egr', 'Eucgr.A01285' => 'egr', 'Eucgr.D02456' => 'egr', 'Eucgr.E00018' => 'egr', 'Eucgr.E01439' => 'egr', 'Eucgr.G02859' => 'egr', 'FAN01G0168' => 'fan', 'FAN01G0453' => 'fan', 'FAN01G2761' => 'fan', 'FAN02G1239' => 'fan', 'FAN03G0645' => 'fan', 'FAN03G2707' => 'fan', 'FAN03G2978' => 'fan', 'FAN04G0227' => 'fan', 'FAN06G0091' => 'fan', 'FAN06G1418' => 'fan', 'FAN06G1512' => 'fan', 'FAN06G1986' => 'fan', 'FAN06G2905' => 'fan', 'FAN06G4325' => 'fan', 'FAN08G0033' => 'fan', 'FAN09G0642' => 'fan', 'FAN10G1763' => 'fan', 'FAN10G2026' => 'fan', 'FAN10G2513' => 'fan', 'FAN10G3402' => 'fan', 'FAN10G3564' => 'fan', 'FAN10G3987' => 'fan', 'FAN13G1490' => 'fan', 'FAN14G5857' => 'fan', 'FAN18G1188' => 'fan', 'FvH4_5g00750' => 'fve', 'FvH4_6g13410' => 'fve', 'FvH4_7g11740' => 'fve', 'FvH4_7g17410' => 'fve', 'FvH4_7g18860' => 'fve', 'Glyma.01G099100' => 'gma', 'Glyma.01G142300' => 'gma', 'Glyma.03G025500' => 'gma', 'Glyma.03G069700' => 'gma', 'Glyma.03G260000' => 'gma', 'Glyma.09G269800' => 'gma', 'Glyma.10G208700' => 'gma', 'Glyma.18G220400' => 'gma', 'Glyma.20G182000' => 'gma', 'Gohir.A01G221726' => 'ghi', 'Gohir.A07G134600' => 'ghi', 'Gohir.A07G146000' => 'ghi', 'Gohir.A08G173900' => 'ghi', 'Gohir.A09G194900' => 'ghi', 'Gohir.A10G204100' => 'ghi', 'Gohir.A11G080600' => 'ghi', 'Gohir.A11G327500' => 'ghi', 'Gohir.A12G101800' => 'ghi', 'Gohir.D01G211200' => 'ghi', 'Gohir.D07G139200' => 'ghi', 'Gohir.D07G152100' => 'ghi', 'Gohir.D08G192600' => 'ghi', 'Gohir.D09G189200' => 'ghi', 'Gohir.D10G212000' => 'ghi', 'Gohir.D11G085200' => 'ghi', 'Gohir.D11G346400' => 'ghi', 'Gohir.D12G104800' => 'ghi', 'Gorai.001G151300' => 'gra', 'Gorai.001G174100' => 'gra', 'Gorai.002G257000' => 'gra', 'Gorai.004G202600' => 'gra', 'Gorai.007G090900' => 'gra', 'Gorai.007G376700' => 'gra', 'Gorai.008G114100' => 'gra', 'Gorai.011G237900' => 'gra', 'GSVIVG01005450001' => 'vvi', 'GSVIVG01016232001' => 'vvi', 'GSVIVG01026157001' => 'vvi', 'GSVIVG01027419001' => 'vvi', 'GSVIVG01027631001' => 'vvi', 'GSVIVG01034143001' => 'vvi', 'HanXRQChr03g0093921' => 'han', 'HanXRQChr04g0120001' => 'han', 'HanXRQChr04g0122561' => 'han', 'HanXRQChr09g0246851' => 'han', 'HanXRQChr10g0293311' => 'han', 'HanXRQChr13g0425231' => 'han', 'HanXRQChr16g0532571' => 'han', 'Haze_09050' => 'cav', 'Haze_15715' => 'cav', 'Haze_15716' => 'cav', 'Haze_16803' => 'cav', 'Haze_16850' => 'cav', 'Hma1.2p1_0301F.1_g118655' => 'hma', 'Hma1.2p1_0309F.1_g120590' => 'hma', 'Hma1.2p1_0936F.1_g238900' => 'hma', 'Hma1.2p1_3552F.1_g336740' => 'hma', 'HPP92_003520' => 'vpl', 'HPP92_006628' => 'vpl', 'HPP92_006645' => 'vpl', 'HPP92_014669' => 'vpl', 'HPP92_015077' => 'vpl', 'Hund16742' => 'sun', 'Hund17022' => 'sun', 'Lalb_Chr02g0152131' => 'lal', 'Lalb_Chr05g0225371' => 'lal', 'Lalb_Chr07g0189841' => 'lal', 'Lalb_Chr07g0192961' => 'lal', 'Lalb_Chr12g0208221' => 'lal', 'Lalb_Chr13g0291211' => 'lal', 'Lalb_Chr13g0291781' => 'lal', 'Lalb_Chr18g0044651' => 'lal', 'Lalb_Chr21g0313731' => 'lal', 'Lj1g0022533' => 'lja', 'Lj2A18T50' => 'lonja', 'Lj2A92G93' => 'lonja', 'Lj3A965T73' => 'lonja', 'Lj3g0000673' => 'lja', 'Lj3g0002666' => 'lja', 'Lj4g0016985' => 'lja', 'Lj5g0003625' => 'lja', 'Lj7A529G36' => 'lonja', 'Lj9A569T49' => 'lonja', 'Lj9A604T63' => 'lonja', 'Lsat_1_v5_gn_3_132060' => 'lsa', 'Lsat_1_v5_gn_4_68941' => 'lsa', 'Lsat_1_v5_gn_5_95580' => 'lsa', 'Lsat_1_v5_gn_7_161' => 'lsa', 'Lsat_1_v5_gn_7_7041' => 'lsa', 'Lsat_1_v5_gn_9_33481' => 'lsa', 'Lsat_1_v5_gn_9_68260' => 'lsa', 'Manes.01G073100' => 'mes', 'Manes.01G266300' => 'mes', 'Manes.02G033300' => 'mes', 'Manes.05G017900' => 'mes', 'Manes.05G046100' => 'mes', 'Manes.08G080900' => 'mes', 'Manes.10G049400' => 'mes', 'Mapoly0009s0186' => 'mpo', 'Mapoly0036s0118' => 'mpo', 'Mapoly0101s0046' => 'mpo', 'MBI04_g30218_MAGBIO' => 'mbi', 'MBI04_g35564_MAGBIO' => 'mbi', 'MBI12_g34011_MAGBIO' => 'mbi', 'MBI14_g04655_MAGBIO' => 'mbi', 'MCO07G653' => 'mco', 'MCO10G173' => 'mco', 'MD01G1087100' => 'mdo', 'MD01G1104200' => 'mdo', 'MD02G1205100' => 'mdo', 'MD04G1079200' => 'mdo', 'MD04G1131400' => 'mdo', 'MD07G1121600' => 'mdo', 'MD07G1157300' => 'mdo', 'MD07G1171000' => 'mdo', 'MD12G1144500' => 'mdo', 'Medtr1g094610' => 'mtr', 'Medtr4g021795' => 'mtr', 'Medtr4g023760' => 'mtr', 'Medtr7g118050' => 'mtr', 'MELO3C005582.2' => 'cme', 'MELO3C005989.2' => 'cme', 'MELO3C006192.2' => 'cme', 'MELO3C009248.2' => 'cme', 'MELO3C019817.2' => 'cme', 'Migut.B01625' => 'egut', 'Migut.B01915' => 'egut', 'Migut.F01721' => 'egut', 'Migut.J00314' => 'egut', 'MSTRG.20742' => 'ama', 'MSTRG.8134' => 'ama', 'Nitab4.5_0000096g0010' => 'nta', 'Nitab4.5_0000202g0030' => 'nta', 'Nitab4.5_0000216g0370' => 'nta', 'Nitab4.5_0000457g0230' => 'nta', 'Nitab4.5_0001702g0170' => 'nta', 'Nitab4.5_0003607g0010' => 'nta', 'Nitab4.5_0004917g0020' => 'nta', 'Nitab4.5_0007059g0010' => 'nta', 'Nitab4.5_0007184g0010' => 'nta', 'Nitab4.5_0007346g0020' => 'nta', 'Nn1g00410' => 'nnu', 'Nn1g01252' => 'nnu', 'Nn2g11168' => 'nnu', 'Nn2g13403' => 'nnu', 'Nn2g13760' => 'nnu', 'Nn4g26380' => 'nnu', 'Oeu000806.2' => 'oeu', 'Oeu005788.1' => 'oeu', 'Oeu006900.3' => 'oeu', 'Oeu007797.1' => 'oeu', 'Oeu011932.1' => 'oeu', 'Oeu022739.1' => 'oeu', 'Oeu037918.1' => 'oeu', 'Oeu055490.2' => 'oeu', 'Os01g0844400' => 'osa', 'Os02g0819100' => 'osa', 'Os03g0804300' => 'osa', 'Os05g0458000' => 'osa', 'Os07g0467800' => 'osa', 'Os12g0602200' => 'osa', 'Peaxi162Scf00013g03444' => 'pax', 'Peaxi162Scf00094g01120' => 'pax', 'Peaxi162Scf00191g01211' => 'pax', 'Peaxi162Scf00238g01110' => 'pax', 'Peaxi162Scf00330g00719' => 'pax', 'Peaxi162Scf00627g00018' => 'pax', 'PGR031G2686' => 'pgr', 'PGR042G0809' => 'pgr', 'PGR142G0193' => 'pgr', 'PGSC0003DMG400011066' => 'stu', 'PGSC0003DMG400012041' => 'stu', 'PGSC0003DMG400013678' => 'stu', 'PGSC0003DMG400023477' => 'stu', 'PGSC0003DMG400025956' => 'stu', 'PGSC0003DMG401019151' => 'stu', 'Phvul.006G116400' => 'pvu', 'Phvul.007G097300' => 'pvu', 'Phvul.010G015000' => 'pvu', 'Phvul.010G083900' => 'pvu', 'Potri.001G117100' => 'ptr', 'Potri.002G147300' => 'ptr', 'Potri.003G115600' => 'ptr', 'Potri.006G087400' => 'ptr', 'Potri.010G226100' => 'ptr', 'Potri.014G069200' => 'ptr', 'Potri.014G104000' => 'ptr', 'Potri.016G100200' => 'ptr', 'Pp3c10_20450' => 'ppa', 'Pp3c1_42400' => 'ppa', 'Pp3c3_24390' => 'ppa', 'Pp3c3_2860' => 'ppa', 'PRCOL_00003193' => 'pco', 'Prupe.2G144500' => 'ppe', 'Prupe.2G195700' => 'ppe', 'Prupe.2G209800' => 'ppe', 'Prupe.5G080000' => 'ppe', 'Prupe.6G257900' => 'ppe', 'Psat3g001160' => 'psa', 'Psat6g181880' => 'psa', 'Psat7g233720' => 'psa', 'PSO063G7587' => 'pso', 'PSO339G2145' => 'pso', 'PSO339G3369' => 'pso', 'PSO478G2747' => 'pso', 'PSO513G0140' => 'pso', 'PSO782G1614' => 'pso', 'PSO782G4889' => 'pso', 'PSO782G5485' => 'pso', 'PSO801G0241' => 'pso', 'QL07p048854' => 'qlo', 'QL08p046745' => 'qlo', 'QL08p052606' => 'qlo', 'QL08p053414' => 'qlo', 'QL08p054868' => 'qlo', 'RcHm_v2.0_Chr1g0350251' => 'rch', 'RcHm_v2.0_Chr1g0360851' => 'rch', 'RcHm_v2.0_Chr1g0362791' => 'rch', 'RcHm_v2.0_Chr3g0466281' => 'rch', 'RcHm_v2.0_Chr7g0201481' => 'rch', 'Rhsim01G0148600' => 'rsi', 'Rhsim05G0194400' => 'rsi', 'Rhsim07G0000700' => 'rsi', 'Rhsim07G0000800' => 'rsi', 'Rhsim07G0027900' => 'rsi', 'Rhsim09G0149500' => 'rsi', 'RhsimUnG0186900' => 'rsi', 'Sabra01G0089900' => 'sbr', 'Sabra02G0114700' => 'sbr', 'Sabra02G0116300' => 'sbr', 'Sabra03G0080100' => 'sbr', 'Sabra08G0024300' => 'sbr', 'Sabra10G0174300' => 'sbr', 'Sabra14G0048900' => 'sbr', 'Sabra14G0076500' => 'sbr', 'SalBow5G2513' => 'sbo', 'Sc01g0002300' => 'sci', 'Sc01g0004450' => 'sci', 'Sc06g0001680' => 'sci', 'Sc23g0003580' => 'sci', 'Sed0000913' => 'sed', 'Sed0001655' => 'sed', 'Sed0007745' => 'sed', 'Sed0010951' => 'sed', 'Sed0017599' => 'sed', 'Sed0021405' => 'sed', 'Sed0022810' => 'sed', 'SEGI_07099' => 'sgi', 'SEGI_11931' => 'sgi', 'SEGI_13187' => 'sgi', 'SEGI_29958' => 'sgi', 'SEGI_36351' => 'sgi', 'SGA_v2.0_scaffold126G33770' => 'sas', 'SGA_v2.0_scaffold153G37003' => 'sas', 'SGA_v2.0_scaffold2G01359' => 'sas', 'SGA_v2.0_scaffold5G03064' => 'sas', 'SGA_v2.0_scaffold95G28903' => 'sas', 'SHI12701' => 'shi', 'SHI26410' => 'shi', 'SHI38997' => 'shi', 'SHI53759' => 'shi', 'SHI53886' => 'shi', 'SHI54714' => 'shi', 'SMO011G0041' => 'smo', 'SMO146G0251' => 'smo', 'SMO160G0004' => 'smo', 'SMO174G0057' => 'smo', 'SMO244G0089' => 'smo', 'SMO296G0011' => 'smo', 'Solyc01g091280.3' => 'sly', 'Solyc05g047610.3' => 'sly', 'Solyc05g047640.3' => 'sly', 'Solyc05g055630.3' => 'sly', 'Solyc10g018160.2' => 'sly', 'Solyc10g084820.2' => 'sly', 'Solyc10g086565.2' => 'sly', 'Sopen01g037030' => 'spe', 'Sopen05g027920' => 'spe', 'Sopen05g034070' => 'spe', 'Sopen10g007260' => 'spe', 'Sopen10g034260' => 'spe', 'Sopen10g035950' => 'spe', 'Sp3g07710' => 'spa', 'Sp4g27420' => 'spa', 'Sp5g02450' => 'spa', 'Sp6g01280' => 'spa', 'Sp6g38480' => 'spa', 'Sp7g20780' => 'spa', 'TAR374G1413' => 'tar', 'TAR623G1777' => 'tar', 'TAR629G2370' => 'tar', 'TAR633G1759' => 'tar', 'TAR636G3387' => 'tar', 'THA.LOC104802447' => 'tha', 'THA.LOC104813916' => 'tha', 'THA.LOC104816423' => 'tha', 'THA.LOC104817246' => 'tha', 'THA.LOC104825895' => 'tha', 'Thecc.01G335200' => 'tca', 'Thecc.01G377400' => 'tca', 'Thecc.03G262200' => 'tca', 'Thecc.05G036800' => 'tca', 'Thecc.10G080500' => 'tca', 'Thecc.10G080800' => 'tca', 'Thhalv10001560m.g' => 'esa', 'Thhalv10006120m.g' => 'esa', 'Thhalv10014375m.g' => 'esa', 'Thhalv10021264m.g' => 'esa', 'Thhalv10028856m.g' => 'esa', 'TPR.G1914' => 'tpr', 'TPR.G4757' => 'tpr', 'TPR.G5595' => 'tpr', 'TWI14G0952' => 'twi', 'TWI14G1307' => 'twi', 'TWI38G2143' => 'twi', 'TWI59G0826' => 'twi', 'TWI77G0527' => 'twi', 'TWI81G0150' => 'twi', 'unitig_21.g21018' => 'ugi', 'unitig_26.g9725' => 'ugi', 'unitig_744.g24653' => 'ugi', 'unitig_749.g13778' => 'ugi', 'unitig_899.g15035' => 'ugi', 'vmacro04296' => 'vma', 'vmacro04852' => 'vma', 'vmacro13404' => 'vma', 'vmacro20169' => 'vma', 'vmacro21014' => 'vma', 'VMungo0331G0237' => 'vmu', 'VMungo0331G0706' => 'vmu', 'VMungo0331G1361' => 'vmu', 'VMungo0331G1489' => 'vmu', 'VMungo0540G1037' => 'vmu', 'VMungo0720G2487' => 'vmu', 'VMungo0720G2721' => 'vmu', 'Zm00001eb086860' => 'zma', 'Zm00001eb104760' => 'zma', 'Zm00001eb148220' => 'zma', 'Zm00001eb259030' => 'zma', 'Zm00001eb289590' => 'zma', 'Zm00001eb420150' => 'zma' ), 'gf_id' => 'HOM05D000968', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000968' ), 'data_identifier' => 'HOM05D000968', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000968', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p31690' => 'bna', 'A03p36040' => 'bna', 'A03p53730' => 'bna', 'A04p01410' => 'bna', 'A05p05420' => 'bna', 'A05p39630' => 'bna', 'A05p39640' => 'bna', 'A09p00970' => 'bna', 'A09p53060' => 'bna', 'A10p31890' => 'bna', 'Aa31LG10G15040' => 'aar', 'Aa31LG1G21090' => 'aar', 'Aa31LG1G26900' => 'aar', 'Aa31LG3G1820' => 'aar', 'Aa31LG5G1100' => 'aar', 'Aa31LG6G4740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2265' => 'aag', 'Actinidia07998' => 'ach', 'Actinidia11266' => 'ach', 'Actinidia12682' => 'ach', 'Actinidia26479' => 'ach', 'Actinidia31406' => 'ach', 'Actinidia32437' => 'ach', 'Actinidia38862' => 'ach', 'Ah.05g174230' => 'amhyb', 'Ah.05g179070' => 'amhyb', 'Ah.05g179090' => 'amhyb', 'Ah.12g059950' => 'amhyb', 'AL3G20480' => 'aly', 'AL4G44520' => 'aly', 'AL5G43110' => 'aly', 'AL6G13890' => 'aly', 'AL6G52620' => 'aly', 'AL7G30830' => 'aly', 'Aqoxy1G00899' => 'aox', 'Aqoxy5G04333' => 'aox', 'Aqoxy7G00641' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3IZ0NN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4EF6AW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W9P8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79GA3M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C43NQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFCU6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G95YVJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCHK29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LU1UG8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX91RN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGB4B1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8DA0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9H7JI' => 'arhy', 'AT3G09320' => 'ath', 'AT3G60800' => 'ath', 'AT4G00840' => 'ath', 'AT4G22750' => 'ath', 'AT5G04270' => 'ath', 'ATR0090G003' => 'atr', 'ATR0559G349' => 'atr', 'ATR0680G261' => 'atr', 'ATR0810G048' => 'atr', 'Atru.chr12.831' => 'acertr', 'Atru.chr5.303' => 'acertr', 'Atru.chr5.748' => 'acertr', 'Atru.chr8.1999' => 'acertr', 'Atru.chr9.1436' => 'acertr', 'AUR62004211' => 'cqu', 'AUR62004548' => 'cqu', 'AUR62013637' => 'cqu', 'AUR62022662' => 'cqu', 'AUR62025777' => 'cqu', 'AUR62042386' => 'cqu', 'BcaB01g02310' => 'bca', 'BcaB01g06062' => 'bca', 'BcaB02g08975' => 'bca', 'BcaB02g08980' => 'bca', 'BcaC01g04228' => 'bca', 'BcaC01g06830' => 'bca', 'BcaC02g10186' => 'bca', 'BcaC02g12214' => 'bca', 'BcaC04g24101' => 'bca', 'BcaC05g29520' => 'bca', 'BcaC05g29661' => 'bca', 'BcaC06g32130' => 'bca', 'BcaC06g32131' => 'bca', 'BcaC07g40601' => 'bca', 'BcaC07g42641' => 'bca', 'BcaNung01038' => 'bca', 'BcaNung01676' => 'bca', 'BcaNung02480' => 'bca', 'BcaNung07376' => 'bca', 'BolC3t16146H' => 'bol', 'BolC3t16637H' => 'bol', 'BolC4t22257H' => 'bol', 'BolC4t24728H' => 'bol', 'BolC5t34517H' => 'bol', 'BolC7t45703H' => 'bol', 'BolC8t51166H' => 'bol', 'BolC9t53038H' => 'bol', 'BolC9t60000H' => 'bol', 'BraA01t01345Z' => 'bra', 'BraA01t01346Z' => 'bra', 'BraA01t01348Z' => 'bra', 'BraA03t12347Z' => 'bra', 'BraA03t12775Z' => 'bra', 'BraA03t14439Z' => 'bra', 'BraA04t15860Z' => 'bra', 'BraA05t19511Z' => 'bra', 'BraA05t22746Z' => 'bra', 'BraA09t35767Z' => 'bra', 'BraA09t40732Z' => 'bra', 'BraA10t45233Z' => 'bra', 'C03p38720' => 'bna', 'C03p43680' => 'bna', 'C04p06350' => 'bna', 'C04p31800' => 'bna', 'C05p58680' => 'bna', 'C07p52110' => 'bna', 'C08p35760' => 'bna', 'C09p01050' => 'bna', 'C09p72600' => 'bna', 'CAN.G106.2' => 'can', 'CAN.G1482.1' => 'can', 'CAN.G324.12' => 'can', 'CAN.G388.20' => 'can', 'CAN.G412.7' => 'can', 'CAN.G694.32' => 'can', 'CAN.G92.12' => 'can', 'CANSAT11G2353' => 'cansat', 'CANSAT21G1398' => 'cansat', 'CANSAT56G2456' => 'cansat', 'CANSAT56G3031' => 'cansat', 'CANSAT56G4539' => 'cansat', 'CARHR083680' => 'chi', 'CARHR171190' => 'chi', 'CARHR209010' => 'chi', 'CARHR229680' => 'chi', 'CARHR249490' => 'chi', 'Carub.0003s0844' => 'cru', 'Carub.0005s2755' => 'cru', 'Carub.0006s0322' => 'cru', 'Carub.0006s3586' => 'cru', 'Carub.0007s1855' => 'cru', 'Ca_07808_v3' => 'car', 'Ca_09535_v3' => 'car', 'Ca_10548_v3' => 'car', 'Ca_19913_v3' => 'car', 'Ca_19916_v3' => 'car', 'Ca_19975_v3' => 'car', 'CBR_g22876' => 'cbr', 'CBR_g22879' => 'cbr', 'CBR_g38491' => 'cbr', 'CBR_g54185' => 'cbr', 'CBR_g54190' => 'cbr', 'Cc02_g11020' => 'ccan', 'Cc02_g23920' => 'ccan', 'Cc02_g39860' => 'ccan', 'Cc02_g39870' => 'ccan', 'Cc03_g06760' => 'ccan', 'Cc06_g02450' => 'ccan', 'Cc09_g09450' => 'ccan', 'CDE02G1959' => 'cde', 'CDE04G0600' => 'cde', 'CDE07G1996' => 'cde', 'CDE07G2078' => 'cde', 'CDE11G0611' => 'cde', 'Cfa001683' => 'cfa', 'Cfa001734' => 'cfa', 'Cfa001737' => 'cfa', 'Cfa003751' => 'cfa', 'Cfa012019' => 'cfa', 'Cfa017353' => 'cfa', 'Cfa017732' => 'cfa', 'Cfa022464' => 'cfa', 'Ciclev10012400m.g' => 'ccl', 'Ciclev10021242m.g' => 'ccl', 'Ciclev10021302m.g' => 'ccl', 'Ciclev10021463m.g' => 'ccl', 'Ciclev10032359m.g' => 'ccl', 'CiPaw.01G081000' => 'cil', 'CiPaw.01G262500' => 'cil', 'CiPaw.01G269800' => 'cil', 'CiPaw.02G168400' => 'cil', 'CiPaw.05G119500' => 'cil', 'CiPaw.11G147300' => 'cil', 'ClCG01G003630' => 'cla', 'ClCG05G000510' => 'cla', 'ClCG05G002300' => 'cla', 'ClCG08G007650' => 'cla', 'ClCG10G021250' => 'cla', 'COL.COLO4_06218' => 'col', 'COL.COLO4_12538' => 'col', 'COL.COLO4_14775' => 'col', 'COL.COLO4_23875' => 'col', 'Cpa.g.sc141.16' => 'cpa', 'Cpa.g.sc169.16' => 'cpa', 'Cpa.g.sc244.4' => 'cpa', 'Cpa.g.sc244.5' => 'cpa', 'Cpa.g.sc29.87' => 'cpa', 'Cpa.g.sc53.115' => 'cpa', 'Cre03.g207502' => 'cre', 'Cre06.g277000' => 'cre', 'Cre09.g394050' => 'cre', 'CsaV3_3G007680' => 'csa', 'CsaV3_3G009710' => 'csa', 'CsaV3_3G034790' => 'csa', 'CsaV3_5G003750' => 'csa', 'CsaV3_6G036620' => 'csa', 'CSS0002288' => 'camsi', 'CSS0011250' => 'camsi', 'CSS0021619' => 'camsi', 'CSS0046701' => 'camsi', 'DCAR_006420' => 'dca', 'DCAR_006865' => 'dca', 'DCAR_008558' => 'dca', 'DCAR_028754' => 'dca', 'DCAR_028755' => 'dca', 'Dinv31218' => 'din', 'Dinv32371' => 'din', 'Dinv34250' => 'din', 'Dinv37156' => 'din', 'Dinv43704' => 'din', 'Duzib093G1811' => 'dzi', 'Duzib106G1622' => 'dzi', 'Duzib114G0504' => 'dzi', 'Duzib128G0338' => 'dzi', 'Duzib128G1577' => 'dzi', 'Duzib133G0104' => 'dzi', 'Duzib133G1080' => 'dzi', 'Duzib138G0324' => 'dzi', 'Duzib138G0394' => 'dzi', 'Duzib205G0122' => 'dzi', 'Duzib268G1020' => 'dzi', 'Duzib268G1359' => 'dzi', 'ECA232G3929' => 'eca', 'ECA236G2210' => 'eca', 'ECA236G2287' => 'eca', 'ECA240G4568' => 'eca', 'ECA247G0894' => 'eca', 'EL10Ac1g00200' => 'bvu', 'EL10Ac1g00886' => 'bvu', 'EL10As1g23091' => 'bvu', 'EL10As1g23092' => 'bvu', 'Eucgr.A01284' => 'egr', 'Eucgr.A01285' => 'egr', 'Eucgr.D02456' => 'egr', 'Eucgr.E00018' => 'egr', 'Eucgr.E01439' => 'egr', 'Eucgr.G02859' => 'egr', 'FAN01G0168' => 'fan', 'FAN01G0453' => 'fan', 'FAN01G2761' => 'fan', 'FAN02G1239' => 'fan', 'FAN03G0645' => 'fan', 'FAN03G2707' => 'fan', 'FAN03G2978' => 'fan', 'FAN04G0227' => 'fan', 'FAN06G0091' => 'fan', 'FAN06G1418' => 'fan', 'FAN06G1512' => 'fan', 'FAN06G1986' => 'fan', 'FAN06G2905' => 'fan', 'FAN06G4325' => 'fan', 'FAN08G0033' => 'fan', 'FAN09G0642' => 'fan', 'FAN10G1763' => 'fan', 'FAN10G2026' => 'fan', 'FAN10G2513' => 'fan', 'FAN10G3402' => 'fan', 'FAN10G3564' => 'fan', 'FAN10G3987' => 'fan', 'FAN13G1490' => 'fan', 'FAN14G5857' => 'fan', 'FAN18G1188' => 'fan', 'FvH4_5g00750' => 'fve', 'FvH4_6g13410' => 'fve', 'FvH4_7g11740' => 'fve', 'FvH4_7g17410' => 'fve', 'FvH4_7g18860' => 'fve', 'Glyma.01G099100' => 'gma', 'Glyma.01G142300' => 'gma', 'Glyma.03G025500' => 'gma', 'Glyma.03G069700' => 'gma', 'Glyma.03G260000' => 'gma', 'Glyma.09G269800' => 'gma', 'Glyma.10G208700' => 'gma', 'Glyma.18G220400' => 'gma', 'Glyma.20G182000' => 'gma', 'Gohir.A01G221726' => 'ghi', 'Gohir.A07G134600' => 'ghi', 'Gohir.A07G146000' => 'ghi', 'Gohir.A08G173900' => 'ghi', 'Gohir.A09G194900' => 'ghi', 'Gohir.A10G204100' => 'ghi', 'Gohir.A11G080600' => 'ghi', 'Gohir.A11G327500' => 'ghi', 'Gohir.A12G101800' => 'ghi', 'Gohir.D01G211200' => 'ghi', 'Gohir.D07G139200' => 'ghi', 'Gohir.D07G152100' => 'ghi', 'Gohir.D08G192600' => 'ghi', 'Gohir.D09G189200' => 'ghi', 'Gohir.D10G212000' => 'ghi', 'Gohir.D11G085200' => 'ghi', 'Gohir.D11G346400' => 'ghi', 'Gohir.D12G104800' => 'ghi', 'Gorai.001G151300' => 'gra', 'Gorai.001G174100' => 'gra', 'Gorai.002G257000' => 'gra', 'Gorai.004G202600' => 'gra', 'Gorai.007G090900' => 'gra', 'Gorai.007G376700' => 'gra', 'Gorai.008G114100' => 'gra', 'Gorai.011G237900' => 'gra', 'GSVIVG01005450001' => 'vvi', 'GSVIVG01016232001' => 'vvi', 'GSVIVG01026157001' => 'vvi', 'GSVIVG01027419001' => 'vvi', 'GSVIVG01027631001' => 'vvi', 'GSVIVG01034143001' => 'vvi', 'HanXRQChr03g0093921' => 'han', 'HanXRQChr04g0120001' => 'han', 'HanXRQChr04g0122561' => 'han', 'HanXRQChr09g0246851' => 'han', 'HanXRQChr10g0293311' => 'han', 'HanXRQChr13g0425231' => 'han', 'HanXRQChr16g0532571' => 'han', 'Haze_09050' => 'cav', 'Haze_15715' => 'cav', 'Haze_15716' => 'cav', 'Haze_16803' => 'cav', 'Haze_16850' => 'cav', 'Hma1.2p1_0301F.1_g118655' => 'hma', 'Hma1.2p1_0309F.1_g120590' => 'hma', 'Hma1.2p1_0936F.1_g238900' => 'hma', 'Hma1.2p1_3552F.1_g336740' => 'hma', 'HPP92_003520' => 'vpl', 'HPP92_006628' => 'vpl', 'HPP92_006645' => 'vpl', 'HPP92_014669' => 'vpl', 'HPP92_015077' => 'vpl', 'Hund16742' => 'sun', 'Hund17022' => 'sun', 'Lalb_Chr02g0152131' => 'lal', 'Lalb_Chr05g0225371' => 'lal', 'Lalb_Chr07g0189841' => 'lal', 'Lalb_Chr07g0192961' => 'lal', 'Lalb_Chr12g0208221' => 'lal', 'Lalb_Chr13g0291211' => 'lal', 'Lalb_Chr13g0291781' => 'lal', 'Lalb_Chr18g0044651' => 'lal', 'Lalb_Chr21g0313731' => 'lal', 'Lj1g0022533' => 'lja', 'Lj2A18T50' => 'lonja', 'Lj2A92G93' => 'lonja', 'Lj3A965T73' => 'lonja', 'Lj3g0000673' => 'lja', 'Lj3g0002666' => 'lja', 'Lj4g0016985' => 'lja', 'Lj5g0003625' => 'lja', 'Lj7A529G36' => 'lonja', 'Lj9A569T49' => 'lonja', 'Lj9A604T63' => 'lonja', 'Lsat_1_v5_gn_3_132060' => 'lsa', 'Lsat_1_v5_gn_4_68941' => 'lsa', 'Lsat_1_v5_gn_5_95580' => 'lsa', 'Lsat_1_v5_gn_7_161' => 'lsa', 'Lsat_1_v5_gn_7_7041' => 'lsa', 'Lsat_1_v5_gn_9_33481' => 'lsa', 'Lsat_1_v5_gn_9_68260' => 'lsa', 'Manes.01G073100' => 'mes', 'Manes.01G266300' => 'mes', 'Manes.02G033300' => 'mes', 'Manes.05G017900' => 'mes', 'Manes.05G046100' => 'mes', 'Manes.08G080900' => 'mes', 'Manes.10G049400' => 'mes', 'Mapoly0009s0186' => 'mpo', 'Mapoly0036s0118' => 'mpo', 'Mapoly0101s0046' => 'mpo', 'MBI04_g30218_MAGBIO' => 'mbi', 'MBI04_g35564_MAGBIO' => 'mbi', 'MBI12_g34011_MAGBIO' => 'mbi', 'MBI14_g04655_MAGBIO' => 'mbi', 'MCO07G653' => 'mco', 'MCO10G173' => 'mco', 'MD01G1087100' => 'mdo', 'MD01G1104200' => 'mdo', 'MD02G1205100' => 'mdo', 'MD04G1079200' => 'mdo', 'MD04G1131400' => 'mdo', 'MD07G1121600' => 'mdo', 'MD07G1157300' => 'mdo', 'MD07G1171000' => 'mdo', 'MD12G1144500' => 'mdo', 'Medtr1g094610' => 'mtr', 'Medtr4g021795' => 'mtr', 'Medtr4g023760' => 'mtr', 'Medtr7g118050' => 'mtr', 'MELO3C005582.2' => 'cme', 'MELO3C005989.2' => 'cme', 'MELO3C006192.2' => 'cme', 'MELO3C009248.2' => 'cme', 'MELO3C019817.2' => 'cme', 'Migut.B01625' => 'egut', 'Migut.B01915' => 'egut', 'Migut.F01721' => 'egut', 'Migut.J00314' => 'egut', 'MSTRG.20742' => 'ama', 'MSTRG.8134' => 'ama', 'Nitab4.5_0000096g0010' => 'nta', 'Nitab4.5_0000202g0030' => 'nta', 'Nitab4.5_0000216g0370' => 'nta', 'Nitab4.5_0000457g0230' => 'nta', 'Nitab4.5_0001702g0170' => 'nta', 'Nitab4.5_0003607g0010' => 'nta', 'Nitab4.5_0004917g0020' => 'nta', 'Nitab4.5_0007059g0010' => 'nta', 'Nitab4.5_0007184g0010' => 'nta', 'Nitab4.5_0007346g0020' => 'nta', 'Nn1g00410' => 'nnu', 'Nn1g01252' => 'nnu', 'Nn2g11168' => 'nnu', 'Nn2g13403' => 'nnu', 'Nn2g13760' => 'nnu', 'Nn4g26380' => 'nnu', 'Oeu000806.2' => 'oeu', 'Oeu005788.1' => 'oeu', 'Oeu006900.3' => 'oeu', 'Oeu007797.1' => 'oeu', 'Oeu011932.1' => 'oeu', 'Oeu022739.1' => 'oeu', 'Oeu037918.1' => 'oeu', 'Oeu055490.2' => 'oeu', 'Os01g0844400' => 'osa', 'Os02g0819100' => 'osa', 'Os03g0804300' => 'osa', 'Os05g0458000' => 'osa', 'Os07g0467800' => 'osa', 'Os12g0602200' => 'osa', 'Peaxi162Scf00013g03444' => 'pax', 'Peaxi162Scf00094g01120' => 'pax', 'Peaxi162Scf00191g01211' => 'pax', 'Peaxi162Scf00238g01110' => 'pax', 'Peaxi162Scf00330g00719' => 'pax', 'Peaxi162Scf00627g00018' => 'pax', 'PGR031G2686' => 'pgr', 'PGR042G0809' => 'pgr', 'PGR142G0193' => 'pgr', 'PGSC0003DMG400011066' => 'stu', 'PGSC0003DMG400012041' => 'stu', 'PGSC0003DMG400013678' => 'stu', 'PGSC0003DMG400023477' => 'stu', 'PGSC0003DMG400025956' => 'stu', 'PGSC0003DMG401019151' => 'stu', 'Phvul.006G116400' => 'pvu', 'Phvul.007G097300' => 'pvu', 'Phvul.010G015000' => 'pvu', 'Phvul.010G083900' => 'pvu', 'Potri.001G117100' => 'ptr', 'Potri.002G147300' => 'ptr', 'Potri.003G115600' => 'ptr', 'Potri.006G087400' => 'ptr', 'Potri.010G226100' => 'ptr', 'Potri.014G069200' => 'ptr', 'Potri.014G104000' => 'ptr', 'Potri.016G100200' => 'ptr', 'Pp3c10_20450' => 'ppa', 'Pp3c1_42400' => 'ppa', 'Pp3c3_24390' => 'ppa', 'Pp3c3_2860' => 'ppa', 'PRCOL_00003193' => 'pco', 'Prupe.2G144500' => 'ppe', 'Prupe.2G195700' => 'ppe', 'Prupe.2G209800' => 'ppe', 'Prupe.5G080000' => 'ppe', 'Prupe.6G257900' => 'ppe', 'Psat3g001160' => 'psa', 'Psat6g181880' => 'psa', 'Psat7g233720' => 'psa', 'PSO063G7587' => 'pso', 'PSO339G2145' => 'pso', 'PSO339G3369' => 'pso', 'PSO478G2747' => 'pso', 'PSO513G0140' => 'pso', 'PSO782G1614' => 'pso', 'PSO782G4889' => 'pso', 'PSO782G5485' => 'pso', 'PSO801G0241' => 'pso', 'QL07p048854' => 'qlo', 'QL08p046745' => 'qlo', 'QL08p052606' => 'qlo', 'QL08p053414' => 'qlo', 'QL08p054868' => 'qlo', 'RcHm_v2.0_Chr1g0350251' => 'rch', 'RcHm_v2.0_Chr1g0360851' => 'rch', 'RcHm_v2.0_Chr1g0362791' => 'rch', 'RcHm_v2.0_Chr3g0466281' => 'rch', 'RcHm_v2.0_Chr7g0201481' => 'rch', 'Rhsim01G0148600' => 'rsi', 'Rhsim05G0194400' => 'rsi', 'Rhsim07G0000700' => 'rsi', 'Rhsim07G0000800' => 'rsi', 'Rhsim07G0027900' => 'rsi', 'Rhsim09G0149500' => 'rsi', 'RhsimUnG0186900' => 'rsi', 'Sabra01G0089900' => 'sbr', 'Sabra02G0114700' => 'sbr', 'Sabra02G0116300' => 'sbr', 'Sabra03G0080100' => 'sbr', 'Sabra08G0024300' => 'sbr', 'Sabra10G0174300' => 'sbr', 'Sabra14G0048900' => 'sbr', 'Sabra14G0076500' => 'sbr', 'SalBow5G2513' => 'sbo', 'Sc01g0002300' => 'sci', 'Sc01g0004450' => 'sci', 'Sc06g0001680' => 'sci', 'Sc23g0003580' => 'sci', 'Sed0000913' => 'sed', 'Sed0001655' => 'sed', 'Sed0007745' => 'sed', 'Sed0010951' => 'sed', 'Sed0017599' => 'sed', 'Sed0021405' => 'sed', 'Sed0022810' => 'sed', 'SEGI_07099' => 'sgi', 'SEGI_11931' => 'sgi', 'SEGI_13187' => 'sgi', 'SEGI_29958' => 'sgi', 'SEGI_36351' => 'sgi', 'SGA_v2.0_scaffold126G33770' => 'sas', 'SGA_v2.0_scaffold153G37003' => 'sas', 'SGA_v2.0_scaffold2G01359' => 'sas', 'SGA_v2.0_scaffold5G03064' => 'sas', 'SGA_v2.0_scaffold95G28903' => 'sas', 'SHI12701' => 'shi', 'SHI26410' => 'shi', 'SHI38997' => 'shi', 'SHI53759' => 'shi', 'SHI53886' => 'shi', 'SHI54714' => 'shi', 'SMO011G0041' => 'smo', 'SMO146G0251' => 'smo', 'SMO160G0004' => 'smo', 'SMO174G0057' => 'smo', 'SMO244G0089' => 'smo', 'SMO296G0011' => 'smo', 'Solyc01g091280.3' => 'sly', 'Solyc05g047610.3' => 'sly', 'Solyc05g047640.3' => 'sly', 'Solyc05g055630.3' => 'sly', 'Solyc10g018160.2' => 'sly', 'Solyc10g084820.2' => 'sly', 'Solyc10g086565.2' => 'sly', 'Sopen01g037030' => 'spe', 'Sopen05g027920' => 'spe', 'Sopen05g034070' => 'spe', 'Sopen10g007260' => 'spe', 'Sopen10g034260' => 'spe', 'Sopen10g035950' => 'spe', 'Sp3g07710' => 'spa', 'Sp4g27420' => 'spa', 'Sp5g02450' => 'spa', 'Sp6g01280' => 'spa', 'Sp6g38480' => 'spa', 'Sp7g20780' => 'spa', 'TAR374G1413' => 'tar', 'TAR623G1777' => 'tar', 'TAR629G2370' => 'tar', 'TAR633G1759' => 'tar', 'TAR636G3387' => 'tar', 'THA.LOC104802447' => 'tha', 'THA.LOC104813916' => 'tha', 'THA.LOC104816423' => 'tha', 'THA.LOC104817246' => 'tha', 'THA.LOC104825895' => 'tha', 'Thecc.01G335200' => 'tca', 'Thecc.01G377400' => 'tca', 'Thecc.03G262200' => 'tca', 'Thecc.05G036800' => 'tca', 'Thecc.10G080500' => 'tca', 'Thecc.10G080800' => 'tca', 'Thhalv10001560m.g' => 'esa', 'Thhalv10006120m.g' => 'esa', 'Thhalv10014375m.g' => 'esa', 'Thhalv10021264m.g' => 'esa', 'Thhalv10028856m.g' => 'esa', 'TPR.G1914' => 'tpr', 'TPR.G4757' => 'tpr', 'TPR.G5595' => 'tpr', 'TWI14G0952' => 'twi', 'TWI14G1307' => 'twi', 'TWI38G2143' => 'twi', 'TWI59G0826' => 'twi', 'TWI77G0527' => 'twi', 'TWI81G0150' => 'twi', 'unitig_21.g21018' => 'ugi', 'unitig_26.g9725' => 'ugi', 'unitig_744.g24653' => 'ugi', 'unitig_749.g13778' => 'ugi', 'unitig_899.g15035' => 'ugi', 'vmacro04296' => 'vma', 'vmacro04852' => 'vma', 'vmacro13404' => 'vma', 'vmacro20169' => 'vma', 'vmacro21014' => 'vma', 'VMungo0331G0237' => 'vmu', 'VMungo0331G0706' => 'vmu', 'VMungo0331G1361' => 'vmu', 'VMungo0331G1489' => 'vmu', 'VMungo0540G1037' => 'vmu', 'VMungo0720G2487' => 'vmu', 'VMungo0720G2721' => 'vmu', 'Zm00001eb086860' => 'zma', 'Zm00001eb104760' => 'zma', 'Zm00001eb148220' => 'zma', 'Zm00001eb259030' => 'zma', 'Zm00001eb289590' => 'zma', 'Zm00001eb420150' => 'zma' ) $gf_id = 'HOM05D000968' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000968' ) $data_identifier = 'HOM05D000968' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 19, 'bol' => (int) 9, 'bra' => (int) 12, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 5, 'ccan' => (int) 7, 'cde' => (int) 5, 'cfa' => (int) 8, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 4, 'dca' => (int) 5, 'din' => (int) 5, 'dzi' => (int) 12, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 25, 'fve' => (int) 5, 'gma' => (int) 9, 'ghi' => (int) 18, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 7, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 5, 'sun' => (int) 2, 'lal' => (int) 9, 'lja' => (int) 5, 'lonja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 9, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 2, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 3, 'stu' => (int) 6, 'pvu' => (int) 4, 'ptr' => (int) 8, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 3, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 1, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 5, 'sas' => (int) 5, 'shi' => (int) 6, 'smo' => (int) 6, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 3, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420150' $species_info = array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ) $local_species = 'tar' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000968', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p31690' => 'bna', 'A03p36040' => 'bna', 'A03p53730' => 'bna', 'A04p01410' => 'bna', 'A05p05420' => 'bna', 'A05p39630' => 'bna', 'A05p39640' => 'bna', 'A09p00970' => 'bna', 'A09p53060' => 'bna', 'A10p31890' => 'bna', 'Aa31LG10G15040' => 'aar', 'Aa31LG1G21090' => 'aar', 'Aa31LG1G26900' => 'aar', 'Aa31LG3G1820' => 'aar', 'Aa31LG5G1100' => 'aar', 'Aa31LG6G4740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2265' => 'aag', 'Actinidia07998' => 'ach', 'Actinidia11266' => 'ach', 'Actinidia12682' => 'ach', 'Actinidia26479' => 'ach', 'Actinidia31406' => 'ach', 'Actinidia32437' => 'ach', 'Actinidia38862' => 'ach', 'Ah.05g174230' => 'amhyb', 'Ah.05g179070' => 'amhyb', 'Ah.05g179090' => 'amhyb', 'Ah.12g059950' => 'amhyb', 'AL3G20480' => 'aly', 'AL4G44520' => 'aly', 'AL5G43110' => 'aly', 'AL6G13890' => 'aly', 'AL6G52620' => 'aly', 'AL7G30830' => 'aly', 'Aqoxy1G00899' => 'aox', 'Aqoxy5G04333' => 'aox', 'Aqoxy7G00641' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3IZ0NN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4EF6AW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W9P8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79GA3M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C43NQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFCU6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G95YVJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCHK29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LU1UG8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX91RN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGB4B1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8DA0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9H7JI' => 'arhy', 'AT3G09320' => 'ath', 'AT3G60800' => 'ath', 'AT4G00840' => 'ath', 'AT4G22750' => 'ath', 'AT5G04270' => 'ath', 'ATR0090G003' => 'atr', 'ATR0559G349' => 'atr', 'ATR0680G261' => 'atr', 'ATR0810G048' => 'atr', 'Atru.chr12.831' => 'acertr', 'Atru.chr5.303' => 'acertr', 'Atru.chr5.748' => 'acertr', 'Atru.chr8.1999' => 'acertr', 'Atru.chr9.1436' => 'acertr', 'AUR62004211' => 'cqu', 'AUR62004548' => 'cqu', 'AUR62013637' => 'cqu', 'AUR62022662' => 'cqu', 'AUR62025777' => 'cqu', 'AUR62042386' => 'cqu', 'BcaB01g02310' => 'bca', 'BcaB01g06062' => 'bca', 'BcaB02g08975' => 'bca', 'BcaB02g08980' => 'bca', 'BcaC01g04228' => 'bca', 'BcaC01g06830' => 'bca', 'BcaC02g10186' => 'bca', 'BcaC02g12214' => 'bca', 'BcaC04g24101' => 'bca', 'BcaC05g29520' => 'bca', 'BcaC05g29661' => 'bca', 'BcaC06g32130' => 'bca', 'BcaC06g32131' => 'bca', 'BcaC07g40601' => 'bca', 'BcaC07g42641' => 'bca', 'BcaNung01038' => 'bca', 'BcaNung01676' => 'bca', 'BcaNung02480' => 'bca', 'BcaNung07376' => 'bca', 'BolC3t16146H' => 'bol', 'BolC3t16637H' => 'bol', 'BolC4t22257H' => 'bol', 'BolC4t24728H' => 'bol', 'BolC5t34517H' => 'bol', 'BolC7t45703H' => 'bol', 'BolC8t51166H' => 'bol', 'BolC9t53038H' => 'bol', 'BolC9t60000H' => 'bol', 'BraA01t01345Z' => 'bra', 'BraA01t01346Z' => 'bra', 'BraA01t01348Z' => 'bra', 'BraA03t12347Z' => 'bra', 'BraA03t12775Z' => 'bra', 'BraA03t14439Z' => 'bra', 'BraA04t15860Z' => 'bra', 'BraA05t19511Z' => 'bra', 'BraA05t22746Z' => 'bra', 'BraA09t35767Z' => 'bra', 'BraA09t40732Z' => 'bra', 'BraA10t45233Z' => 'bra', 'C03p38720' => 'bna', 'C03p43680' => 'bna', 'C04p06350' => 'bna', 'C04p31800' => 'bna', 'C05p58680' => 'bna', 'C07p52110' => 'bna', 'C08p35760' => 'bna', 'C09p01050' => 'bna', 'C09p72600' => 'bna', 'CAN.G106.2' => 'can', 'CAN.G1482.1' => 'can', 'CAN.G324.12' => 'can', 'CAN.G388.20' => 'can', 'CAN.G412.7' => 'can', 'CAN.G694.32' => 'can', 'CAN.G92.12' => 'can', 'CANSAT11G2353' => 'cansat', 'CANSAT21G1398' => 'cansat', 'CANSAT56G2456' => 'cansat', 'CANSAT56G3031' => 'cansat', 'CANSAT56G4539' => 'cansat', 'CARHR083680' => 'chi', 'CARHR171190' => 'chi', 'CARHR209010' => 'chi', 'CARHR229680' => 'chi', 'CARHR249490' => 'chi', 'Carub.0003s0844' => 'cru', 'Carub.0005s2755' => 'cru', 'Carub.0006s0322' => 'cru', 'Carub.0006s3586' => 'cru', 'Carub.0007s1855' => 'cru', 'Ca_07808_v3' => 'car', 'Ca_09535_v3' => 'car', 'Ca_10548_v3' => 'car', 'Ca_19913_v3' => 'car', 'Ca_19916_v3' => 'car', 'Ca_19975_v3' => 'car', 'CBR_g22876' => 'cbr', 'CBR_g22879' => 'cbr', 'CBR_g38491' => 'cbr', 'CBR_g54185' => 'cbr', 'CBR_g54190' => 'cbr', 'Cc02_g11020' => 'ccan', 'Cc02_g23920' => 'ccan', 'Cc02_g39860' => 'ccan', 'Cc02_g39870' => 'ccan', 'Cc03_g06760' => 'ccan', 'Cc06_g02450' => 'ccan', 'Cc09_g09450' => 'ccan', 'CDE02G1959' => 'cde', 'CDE04G0600' => 'cde', 'CDE07G1996' => 'cde', 'CDE07G2078' => 'cde', 'CDE11G0611' => 'cde', 'Cfa001683' => 'cfa', 'Cfa001734' => 'cfa', 'Cfa001737' => 'cfa', 'Cfa003751' => 'cfa', 'Cfa012019' => 'cfa', 'Cfa017353' => 'cfa', 'Cfa017732' => 'cfa', 'Cfa022464' => 'cfa', 'Ciclev10012400m.g' => 'ccl', 'Ciclev10021242m.g' => 'ccl', 'Ciclev10021302m.g' => 'ccl', 'Ciclev10021463m.g' => 'ccl', 'Ciclev10032359m.g' => 'ccl', 'CiPaw.01G081000' => 'cil', 'CiPaw.01G262500' => 'cil', 'CiPaw.01G269800' => 'cil', 'CiPaw.02G168400' => 'cil', 'CiPaw.05G119500' => 'cil', 'CiPaw.11G147300' => 'cil', 'ClCG01G003630' => 'cla', 'ClCG05G000510' => 'cla', 'ClCG05G002300' => 'cla', 'ClCG08G007650' => 'cla', 'ClCG10G021250' => 'cla', 'COL.COLO4_06218' => 'col', 'COL.COLO4_12538' => 'col', 'COL.COLO4_14775' => 'col', 'COL.COLO4_23875' => 'col', 'Cpa.g.sc141.16' => 'cpa', 'Cpa.g.sc169.16' => 'cpa', 'Cpa.g.sc244.4' => 'cpa', 'Cpa.g.sc244.5' => 'cpa', 'Cpa.g.sc29.87' => 'cpa', 'Cpa.g.sc53.115' => 'cpa', 'Cre03.g207502' => 'cre', 'Cre06.g277000' => 'cre', 'Cre09.g394050' => 'cre', 'CsaV3_3G007680' => 'csa', 'CsaV3_3G009710' => 'csa', 'CsaV3_3G034790' => 'csa', 'CsaV3_5G003750' => 'csa', 'CsaV3_6G036620' => 'csa', 'CSS0002288' => 'camsi', 'CSS0011250' => 'camsi', 'CSS0021619' => 'camsi', 'CSS0046701' => 'camsi', 'DCAR_006420' => 'dca', 'DCAR_006865' => 'dca', 'DCAR_008558' => 'dca', 'DCAR_028754' => 'dca', 'DCAR_028755' => 'dca', 'Dinv31218' => 'din', 'Dinv32371' => 'din', 'Dinv34250' => 'din', 'Dinv37156' => 'din', 'Dinv43704' => 'din', 'Duzib093G1811' => 'dzi', 'Duzib106G1622' => 'dzi', 'Duzib114G0504' => 'dzi', 'Duzib128G0338' => 'dzi', 'Duzib128G1577' => 'dzi', 'Duzib133G0104' => 'dzi', 'Duzib133G1080' => 'dzi', 'Duzib138G0324' => 'dzi', 'Duzib138G0394' => 'dzi', 'Duzib205G0122' => 'dzi', 'Duzib268G1020' => 'dzi', 'Duzib268G1359' => 'dzi', 'ECA232G3929' => 'eca', 'ECA236G2210' => 'eca', 'ECA236G2287' => 'eca', 'ECA240G4568' => 'eca', 'ECA247G0894' => 'eca', 'EL10Ac1g00200' => 'bvu', 'EL10Ac1g00886' => 'bvu', 'EL10As1g23091' => 'bvu', 'EL10As1g23092' => 'bvu', 'Eucgr.A01284' => 'egr', 'Eucgr.A01285' => 'egr', 'Eucgr.D02456' => 'egr', 'Eucgr.E00018' => 'egr', 'Eucgr.E01439' => 'egr', 'Eucgr.G02859' => 'egr', 'FAN01G0168' => 'fan', 'FAN01G0453' => 'fan', 'FAN01G2761' => 'fan', 'FAN02G1239' => 'fan', 'FAN03G0645' => 'fan', 'FAN03G2707' => 'fan', 'FAN03G2978' => 'fan', 'FAN04G0227' => 'fan', 'FAN06G0091' => 'fan', 'FAN06G1418' => 'fan', 'FAN06G1512' => 'fan', 'FAN06G1986' => 'fan', 'FAN06G2905' => 'fan', 'FAN06G4325' => 'fan', 'FAN08G0033' => 'fan', 'FAN09G0642' => 'fan', 'FAN10G1763' => 'fan', 'FAN10G2026' => 'fan', 'FAN10G2513' => 'fan', 'FAN10G3402' => 'fan', 'FAN10G3564' => 'fan', 'FAN10G3987' => 'fan', 'FAN13G1490' => 'fan', 'FAN14G5857' => 'fan', 'FAN18G1188' => 'fan', 'FvH4_5g00750' => 'fve', 'FvH4_6g13410' => 'fve', 'FvH4_7g11740' => 'fve', 'FvH4_7g17410' => 'fve', 'FvH4_7g18860' => 'fve', 'Glyma.01G099100' => 'gma', 'Glyma.01G142300' => 'gma', 'Glyma.03G025500' => 'gma', 'Glyma.03G069700' => 'gma', 'Glyma.03G260000' => 'gma', 'Glyma.09G269800' => 'gma', 'Glyma.10G208700' => 'gma', 'Glyma.18G220400' => 'gma', 'Glyma.20G182000' => 'gma', 'Gohir.A01G221726' => 'ghi', 'Gohir.A07G134600' => 'ghi', 'Gohir.A07G146000' => 'ghi', 'Gohir.A08G173900' => 'ghi', 'Gohir.A09G194900' => 'ghi', 'Gohir.A10G204100' => 'ghi', 'Gohir.A11G080600' => 'ghi', 'Gohir.A11G327500' => 'ghi', 'Gohir.A12G101800' => 'ghi', 'Gohir.D01G211200' => 'ghi', 'Gohir.D07G139200' => 'ghi', 'Gohir.D07G152100' => 'ghi', 'Gohir.D08G192600' => 'ghi', 'Gohir.D09G189200' => 'ghi', 'Gohir.D10G212000' => 'ghi', 'Gohir.D11G085200' => 'ghi', 'Gohir.D11G346400' => 'ghi', 'Gohir.D12G104800' => 'ghi', 'Gorai.001G151300' => 'gra', 'Gorai.001G174100' => 'gra', 'Gorai.002G257000' => 'gra', 'Gorai.004G202600' => 'gra', 'Gorai.007G090900' => 'gra', 'Gorai.007G376700' => 'gra', 'Gorai.008G114100' => 'gra', 'Gorai.011G237900' => 'gra', 'GSVIVG01005450001' => 'vvi', 'GSVIVG01016232001' => 'vvi', 'GSVIVG01026157001' => 'vvi', 'GSVIVG01027419001' => 'vvi', 'GSVIVG01027631001' => 'vvi', 'GSVIVG01034143001' => 'vvi', 'HanXRQChr03g0093921' => 'han', 'HanXRQChr04g0120001' => 'han', 'HanXRQChr04g0122561' => 'han', 'HanXRQChr09g0246851' => 'han', 'HanXRQChr10g0293311' => 'han', 'HanXRQChr13g0425231' => 'han', 'HanXRQChr16g0532571' => 'han', 'Haze_09050' => 'cav', 'Haze_15715' => 'cav', 'Haze_15716' => 'cav', 'Haze_16803' => 'cav', 'Haze_16850' => 'cav', 'Hma1.2p1_0301F.1_g118655' => 'hma', 'Hma1.2p1_0309F.1_g120590' => 'hma', 'Hma1.2p1_0936F.1_g238900' => 'hma', 'Hma1.2p1_3552F.1_g336740' => 'hma', 'HPP92_003520' => 'vpl', 'HPP92_006628' => 'vpl', 'HPP92_006645' => 'vpl', 'HPP92_014669' => 'vpl', 'HPP92_015077' => 'vpl', 'Hund16742' => 'sun', 'Hund17022' => 'sun', 'Lalb_Chr02g0152131' => 'lal', 'Lalb_Chr05g0225371' => 'lal', 'Lalb_Chr07g0189841' => 'lal', 'Lalb_Chr07g0192961' => 'lal', 'Lalb_Chr12g0208221' => 'lal', 'Lalb_Chr13g0291211' => 'lal', 'Lalb_Chr13g0291781' => 'lal', 'Lalb_Chr18g0044651' => 'lal', 'Lalb_Chr21g0313731' => 'lal', 'Lj1g0022533' => 'lja', 'Lj2A18T50' => 'lonja', 'Lj2A92G93' => 'lonja', 'Lj3A965T73' => 'lonja', 'Lj3g0000673' => 'lja', 'Lj3g0002666' => 'lja', 'Lj4g0016985' => 'lja', 'Lj5g0003625' => 'lja', 'Lj7A529G36' => 'lonja', 'Lj9A569T49' => 'lonja', 'Lj9A604T63' => 'lonja', 'Lsat_1_v5_gn_3_132060' => 'lsa', 'Lsat_1_v5_gn_4_68941' => 'lsa', 'Lsat_1_v5_gn_5_95580' => 'lsa', 'Lsat_1_v5_gn_7_161' => 'lsa', 'Lsat_1_v5_gn_7_7041' => 'lsa', 'Lsat_1_v5_gn_9_33481' => 'lsa', 'Lsat_1_v5_gn_9_68260' => 'lsa', 'Manes.01G073100' => 'mes', 'Manes.01G266300' => 'mes', 'Manes.02G033300' => 'mes', 'Manes.05G017900' => 'mes', 'Manes.05G046100' => 'mes', 'Manes.08G080900' => 'mes', 'Manes.10G049400' => 'mes', 'Mapoly0009s0186' => 'mpo', 'Mapoly0036s0118' => 'mpo', 'Mapoly0101s0046' => 'mpo', 'MBI04_g30218_MAGBIO' => 'mbi', 'MBI04_g35564_MAGBIO' => 'mbi', 'MBI12_g34011_MAGBIO' => 'mbi', 'MBI14_g04655_MAGBIO' => 'mbi', 'MCO07G653' => 'mco', 'MCO10G173' => 'mco', 'MD01G1087100' => 'mdo', 'MD01G1104200' => 'mdo', 'MD02G1205100' => 'mdo', 'MD04G1079200' => 'mdo', 'MD04G1131400' => 'mdo', 'MD07G1121600' => 'mdo', 'MD07G1157300' => 'mdo', 'MD07G1171000' => 'mdo', 'MD12G1144500' => 'mdo', 'Medtr1g094610' => 'mtr', 'Medtr4g021795' => 'mtr', 'Medtr4g023760' => 'mtr', 'Medtr7g118050' => 'mtr', 'MELO3C005582.2' => 'cme', 'MELO3C005989.2' => 'cme', 'MELO3C006192.2' => 'cme', 'MELO3C009248.2' => 'cme', 'MELO3C019817.2' => 'cme', 'Migut.B01625' => 'egut', 'Migut.B01915' => 'egut', 'Migut.F01721' => 'egut', 'Migut.J00314' => 'egut', 'MSTRG.20742' => 'ama', 'MSTRG.8134' => 'ama', 'Nitab4.5_0000096g0010' => 'nta', 'Nitab4.5_0000202g0030' => 'nta', 'Nitab4.5_0000216g0370' => 'nta', 'Nitab4.5_0000457g0230' => 'nta', 'Nitab4.5_0001702g0170' => 'nta', 'Nitab4.5_0003607g0010' => 'nta', 'Nitab4.5_0004917g0020' => 'nta', 'Nitab4.5_0007059g0010' => 'nta', 'Nitab4.5_0007184g0010' => 'nta', 'Nitab4.5_0007346g0020' => 'nta', 'Nn1g00410' => 'nnu', 'Nn1g01252' => 'nnu', 'Nn2g11168' => 'nnu', 'Nn2g13403' => 'nnu', 'Nn2g13760' => 'nnu', 'Nn4g26380' => 'nnu', 'Oeu000806.2' => 'oeu', 'Oeu005788.1' => 'oeu', 'Oeu006900.3' => 'oeu', 'Oeu007797.1' => 'oeu', 'Oeu011932.1' => 'oeu', 'Oeu022739.1' => 'oeu', 'Oeu037918.1' => 'oeu', 'Oeu055490.2' => 'oeu', 'Os01g0844400' => 'osa', 'Os02g0819100' => 'osa', 'Os03g0804300' => 'osa', 'Os05g0458000' => 'osa', 'Os07g0467800' => 'osa', 'Os12g0602200' => 'osa', 'Peaxi162Scf00013g03444' => 'pax', 'Peaxi162Scf00094g01120' => 'pax', 'Peaxi162Scf00191g01211' => 'pax', 'Peaxi162Scf00238g01110' => 'pax', 'Peaxi162Scf00330g00719' => 'pax', 'Peaxi162Scf00627g00018' => 'pax', 'PGR031G2686' => 'pgr', 'PGR042G0809' => 'pgr', 'PGR142G0193' => 'pgr', 'PGSC0003DMG400011066' => 'stu', 'PGSC0003DMG400012041' => 'stu', 'PGSC0003DMG400013678' => 'stu', 'PGSC0003DMG400023477' => 'stu', 'PGSC0003DMG400025956' => 'stu', 'PGSC0003DMG401019151' => 'stu', 'Phvul.006G116400' => 'pvu', 'Phvul.007G097300' => 'pvu', 'Phvul.010G015000' => 'pvu', 'Phvul.010G083900' => 'pvu', 'Potri.001G117100' => 'ptr', 'Potri.002G147300' => 'ptr', 'Potri.003G115600' => 'ptr', 'Potri.006G087400' => 'ptr', 'Potri.010G226100' => 'ptr', 'Potri.014G069200' => 'ptr', 'Potri.014G104000' => 'ptr', 'Potri.016G100200' => 'ptr', 'Pp3c10_20450' => 'ppa', 'Pp3c1_42400' => 'ppa', 'Pp3c3_24390' => 'ppa', 'Pp3c3_2860' => 'ppa', 'PRCOL_00003193' => 'pco', 'Prupe.2G144500' => 'ppe', 'Prupe.2G195700' => 'ppe', 'Prupe.2G209800' => 'ppe', 'Prupe.5G080000' => 'ppe', 'Prupe.6G257900' => 'ppe', 'Psat3g001160' => 'psa', 'Psat6g181880' => 'psa', 'Psat7g233720' => 'psa', 'PSO063G7587' => 'pso', 'PSO339G2145' => 'pso', 'PSO339G3369' => 'pso', 'PSO478G2747' => 'pso', 'PSO513G0140' => 'pso', 'PSO782G1614' => 'pso', 'PSO782G4889' => 'pso', 'PSO782G5485' => 'pso', 'PSO801G0241' => 'pso', 'QL07p048854' => 'qlo', 'QL08p046745' => 'qlo', 'QL08p052606' => 'qlo', 'QL08p053414' => 'qlo', 'QL08p054868' => 'qlo', 'RcHm_v2.0_Chr1g0350251' => 'rch', 'RcHm_v2.0_Chr1g0360851' => 'rch', 'RcHm_v2.0_Chr1g0362791' => 'rch', 'RcHm_v2.0_Chr3g0466281' => 'rch', 'RcHm_v2.0_Chr7g0201481' => 'rch', 'Rhsim01G0148600' => 'rsi', 'Rhsim05G0194400' => 'rsi', 'Rhsim07G0000700' => 'rsi', 'Rhsim07G0000800' => 'rsi', 'Rhsim07G0027900' => 'rsi', 'Rhsim09G0149500' => 'rsi', 'RhsimUnG0186900' => 'rsi', 'Sabra01G0089900' => 'sbr', 'Sabra02G0114700' => 'sbr', 'Sabra02G0116300' => 'sbr', 'Sabra03G0080100' => 'sbr', 'Sabra08G0024300' => 'sbr', 'Sabra10G0174300' => 'sbr', 'Sabra14G0048900' => 'sbr', 'Sabra14G0076500' => 'sbr', 'SalBow5G2513' => 'sbo', 'Sc01g0002300' => 'sci', 'Sc01g0004450' => 'sci', 'Sc06g0001680' => 'sci', 'Sc23g0003580' => 'sci', 'Sed0000913' => 'sed', 'Sed0001655' => 'sed', 'Sed0007745' => 'sed', 'Sed0010951' => 'sed', 'Sed0017599' => 'sed', 'Sed0021405' => 'sed', 'Sed0022810' => 'sed', 'SEGI_07099' => 'sgi', 'SEGI_11931' => 'sgi', 'SEGI_13187' => 'sgi', 'SEGI_29958' => 'sgi', 'SEGI_36351' => 'sgi', 'SGA_v2.0_scaffold126G33770' => 'sas', 'SGA_v2.0_scaffold153G37003' => 'sas', 'SGA_v2.0_scaffold2G01359' => 'sas', 'SGA_v2.0_scaffold5G03064' => 'sas', 'SGA_v2.0_scaffold95G28903' => 'sas', 'SHI12701' => 'shi', 'SHI26410' => 'shi', 'SHI38997' => 'shi', 'SHI53759' => 'shi', 'SHI53886' => 'shi', 'SHI54714' => 'shi', 'SMO011G0041' => 'smo', 'SMO146G0251' => 'smo', 'SMO160G0004' => 'smo', 'SMO174G0057' => 'smo', 'SMO244G0089' => 'smo', 'SMO296G0011' => 'smo', 'Solyc01g091280.3' => 'sly', 'Solyc05g047610.3' => 'sly', 'Solyc05g047640.3' => 'sly', 'Solyc05g055630.3' => 'sly', 'Solyc10g018160.2' => 'sly', 'Solyc10g084820.2' => 'sly', 'Solyc10g086565.2' => 'sly', 'Sopen01g037030' => 'spe', 'Sopen05g027920' => 'spe', 'Sopen05g034070' => 'spe', 'Sopen10g007260' => 'spe', 'Sopen10g034260' => 'spe', 'Sopen10g035950' => 'spe', 'Sp3g07710' => 'spa', 'Sp4g27420' => 'spa', 'Sp5g02450' => 'spa', 'Sp6g01280' => 'spa', 'Sp6g38480' => 'spa', 'Sp7g20780' => 'spa', 'TAR374G1413' => 'tar', 'TAR623G1777' => 'tar', 'TAR629G2370' => 'tar', 'TAR633G1759' => 'tar', 'TAR636G3387' => 'tar', 'THA.LOC104802447' => 'tha', 'THA.LOC104813916' => 'tha', 'THA.LOC104816423' => 'tha', 'THA.LOC104817246' => 'tha', 'THA.LOC104825895' => 'tha', 'Thecc.01G335200' => 'tca', 'Thecc.01G377400' => 'tca', 'Thecc.03G262200' => 'tca', 'Thecc.05G036800' => 'tca', 'Thecc.10G080500' => 'tca', 'Thecc.10G080800' => 'tca', 'Thhalv10001560m.g' => 'esa', 'Thhalv10006120m.g' => 'esa', 'Thhalv10014375m.g' => 'esa', 'Thhalv10021264m.g' => 'esa', 'Thhalv10028856m.g' => 'esa', 'TPR.G1914' => 'tpr', 'TPR.G4757' => 'tpr', 'TPR.G5595' => 'tpr', 'TWI14G0952' => 'twi', 'TWI14G1307' => 'twi', 'TWI38G2143' => 'twi', 'TWI59G0826' => 'twi', 'TWI77G0527' => 'twi', 'TWI81G0150' => 'twi', 'unitig_21.g21018' => 'ugi', 'unitig_26.g9725' => 'ugi', 'unitig_744.g24653' => 'ugi', 'unitig_749.g13778' => 'ugi', 'unitig_899.g15035' => 'ugi', 'vmacro04296' => 'vma', 'vmacro04852' => 'vma', 'vmacro13404' => 'vma', 'vmacro20169' => 'vma', 'vmacro21014' => 'vma', 'VMungo0331G0237' => 'vmu', 'VMungo0331G0706' => 'vmu', 'VMungo0331G1361' => 'vmu', 'VMungo0331G1489' => 'vmu', 'VMungo0540G1037' => 'vmu', 'VMungo0720G2487' => 'vmu', 'VMungo0720G2721' => 'vmu', 'Zm00001eb086860' => 'zma', 'Zm00001eb104760' => 'zma', 'Zm00001eb148220' => 'zma', 'Zm00001eb259030' => 'zma', 'Zm00001eb289590' => 'zma', 'Zm00001eb420150' => 'zma' ), 'gf_id' => 'HOM05D000968', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000968' ), 'data_identifier' => 'HOM05D000968', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000968', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p31690' => 'bna', 'A03p36040' => 'bna', 'A03p53730' => 'bna', 'A04p01410' => 'bna', 'A05p05420' => 'bna', 'A05p39630' => 'bna', 'A05p39640' => 'bna', 'A09p00970' => 'bna', 'A09p53060' => 'bna', 'A10p31890' => 'bna', 'Aa31LG10G15040' => 'aar', 'Aa31LG1G21090' => 'aar', 'Aa31LG1G26900' => 'aar', 'Aa31LG3G1820' => 'aar', 'Aa31LG5G1100' => 'aar', 'Aa31LG6G4740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2265' => 'aag', 'Actinidia07998' => 'ach', 'Actinidia11266' => 'ach', 'Actinidia12682' => 'ach', 'Actinidia26479' => 'ach', 'Actinidia31406' => 'ach', 'Actinidia32437' => 'ach', 'Actinidia38862' => 'ach', 'Ah.05g174230' => 'amhyb', 'Ah.05g179070' => 'amhyb', 'Ah.05g179090' => 'amhyb', 'Ah.12g059950' => 'amhyb', 'AL3G20480' => 'aly', 'AL4G44520' => 'aly', 'AL5G43110' => 'aly', 'AL6G13890' => 'aly', 'AL6G52620' => 'aly', 'AL7G30830' => 'aly', 'Aqoxy1G00899' => 'aox', 'Aqoxy5G04333' => 'aox', 'Aqoxy7G00641' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3IZ0NN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4EF6AW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W9P8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79GA3M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C43NQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFCU6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G95YVJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCHK29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LU1UG8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX91RN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGB4B1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8DA0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9H7JI' => 'arhy', 'AT3G09320' => 'ath', 'AT3G60800' => 'ath', 'AT4G00840' => 'ath', 'AT4G22750' => 'ath', 'AT5G04270' => 'ath', 'ATR0090G003' => 'atr', 'ATR0559G349' => 'atr', 'ATR0680G261' => 'atr', 'ATR0810G048' => 'atr', 'Atru.chr12.831' => 'acertr', 'Atru.chr5.303' => 'acertr', 'Atru.chr5.748' => 'acertr', 'Atru.chr8.1999' => 'acertr', 'Atru.chr9.1436' => 'acertr', 'AUR62004211' => 'cqu', 'AUR62004548' => 'cqu', 'AUR62013637' => 'cqu', 'AUR62022662' => 'cqu', 'AUR62025777' => 'cqu', 'AUR62042386' => 'cqu', 'BcaB01g02310' => 'bca', 'BcaB01g06062' => 'bca', 'BcaB02g08975' => 'bca', 'BcaB02g08980' => 'bca', 'BcaC01g04228' => 'bca', 'BcaC01g06830' => 'bca', 'BcaC02g10186' => 'bca', 'BcaC02g12214' => 'bca', 'BcaC04g24101' => 'bca', 'BcaC05g29520' => 'bca', 'BcaC05g29661' => 'bca', 'BcaC06g32130' => 'bca', 'BcaC06g32131' => 'bca', 'BcaC07g40601' => 'bca', 'BcaC07g42641' => 'bca', 'BcaNung01038' => 'bca', 'BcaNung01676' => 'bca', 'BcaNung02480' => 'bca', 'BcaNung07376' => 'bca', 'BolC3t16146H' => 'bol', 'BolC3t16637H' => 'bol', 'BolC4t22257H' => 'bol', 'BolC4t24728H' => 'bol', 'BolC5t34517H' => 'bol', 'BolC7t45703H' => 'bol', 'BolC8t51166H' => 'bol', 'BolC9t53038H' => 'bol', 'BolC9t60000H' => 'bol', 'BraA01t01345Z' => 'bra', 'BraA01t01346Z' => 'bra', 'BraA01t01348Z' => 'bra', 'BraA03t12347Z' => 'bra', 'BraA03t12775Z' => 'bra', 'BraA03t14439Z' => 'bra', 'BraA04t15860Z' => 'bra', 'BraA05t19511Z' => 'bra', 'BraA05t22746Z' => 'bra', 'BraA09t35767Z' => 'bra', 'BraA09t40732Z' => 'bra', 'BraA10t45233Z' => 'bra', 'C03p38720' => 'bna', 'C03p43680' => 'bna', 'C04p06350' => 'bna', 'C04p31800' => 'bna', 'C05p58680' => 'bna', 'C07p52110' => 'bna', 'C08p35760' => 'bna', 'C09p01050' => 'bna', 'C09p72600' => 'bna', 'CAN.G106.2' => 'can', 'CAN.G1482.1' => 'can', 'CAN.G324.12' => 'can', 'CAN.G388.20' => 'can', 'CAN.G412.7' => 'can', 'CAN.G694.32' => 'can', 'CAN.G92.12' => 'can', 'CANSAT11G2353' => 'cansat', 'CANSAT21G1398' => 'cansat', 'CANSAT56G2456' => 'cansat', 'CANSAT56G3031' => 'cansat', 'CANSAT56G4539' => 'cansat', 'CARHR083680' => 'chi', 'CARHR171190' => 'chi', 'CARHR209010' => 'chi', 'CARHR229680' => 'chi', 'CARHR249490' => 'chi', 'Carub.0003s0844' => 'cru', 'Carub.0005s2755' => 'cru', 'Carub.0006s0322' => 'cru', 'Carub.0006s3586' => 'cru', 'Carub.0007s1855' => 'cru', 'Ca_07808_v3' => 'car', 'Ca_09535_v3' => 'car', 'Ca_10548_v3' => 'car', 'Ca_19913_v3' => 'car', 'Ca_19916_v3' => 'car', 'Ca_19975_v3' => 'car', 'CBR_g22876' => 'cbr', 'CBR_g22879' => 'cbr', 'CBR_g38491' => 'cbr', 'CBR_g54185' => 'cbr', 'CBR_g54190' => 'cbr', 'Cc02_g11020' => 'ccan', 'Cc02_g23920' => 'ccan', 'Cc02_g39860' => 'ccan', 'Cc02_g39870' => 'ccan', 'Cc03_g06760' => 'ccan', 'Cc06_g02450' => 'ccan', 'Cc09_g09450' => 'ccan', 'CDE02G1959' => 'cde', 'CDE04G0600' => 'cde', 'CDE07G1996' => 'cde', 'CDE07G2078' => 'cde', 'CDE11G0611' => 'cde', 'Cfa001683' => 'cfa', 'Cfa001734' => 'cfa', 'Cfa001737' => 'cfa', 'Cfa003751' => 'cfa', 'Cfa012019' => 'cfa', 'Cfa017353' => 'cfa', 'Cfa017732' => 'cfa', 'Cfa022464' => 'cfa', 'Ciclev10012400m.g' => 'ccl', 'Ciclev10021242m.g' => 'ccl', 'Ciclev10021302m.g' => 'ccl', 'Ciclev10021463m.g' => 'ccl', 'Ciclev10032359m.g' => 'ccl', 'CiPaw.01G081000' => 'cil', 'CiPaw.01G262500' => 'cil', 'CiPaw.01G269800' => 'cil', 'CiPaw.02G168400' => 'cil', 'CiPaw.05G119500' => 'cil', 'CiPaw.11G147300' => 'cil', 'ClCG01G003630' => 'cla', 'ClCG05G000510' => 'cla', 'ClCG05G002300' => 'cla', 'ClCG08G007650' => 'cla', 'ClCG10G021250' => 'cla', 'COL.COLO4_06218' => 'col', 'COL.COLO4_12538' => 'col', 'COL.COLO4_14775' => 'col', 'COL.COLO4_23875' => 'col', 'Cpa.g.sc141.16' => 'cpa', 'Cpa.g.sc169.16' => 'cpa', 'Cpa.g.sc244.4' => 'cpa', 'Cpa.g.sc244.5' => 'cpa', 'Cpa.g.sc29.87' => 'cpa', 'Cpa.g.sc53.115' => 'cpa', 'Cre03.g207502' => 'cre', 'Cre06.g277000' => 'cre', 'Cre09.g394050' => 'cre', 'CsaV3_3G007680' => 'csa', 'CsaV3_3G009710' => 'csa', 'CsaV3_3G034790' => 'csa', 'CsaV3_5G003750' => 'csa', 'CsaV3_6G036620' => 'csa', 'CSS0002288' => 'camsi', 'CSS0011250' => 'camsi', 'CSS0021619' => 'camsi', 'CSS0046701' => 'camsi', 'DCAR_006420' => 'dca', 'DCAR_006865' => 'dca', 'DCAR_008558' => 'dca', 'DCAR_028754' => 'dca', 'DCAR_028755' => 'dca', 'Dinv31218' => 'din', 'Dinv32371' => 'din', 'Dinv34250' => 'din', 'Dinv37156' => 'din', 'Dinv43704' => 'din', 'Duzib093G1811' => 'dzi', 'Duzib106G1622' => 'dzi', 'Duzib114G0504' => 'dzi', 'Duzib128G0338' => 'dzi', 'Duzib128G1577' => 'dzi', 'Duzib133G0104' => 'dzi', 'Duzib133G1080' => 'dzi', 'Duzib138G0324' => 'dzi', 'Duzib138G0394' => 'dzi', 'Duzib205G0122' => 'dzi', 'Duzib268G1020' => 'dzi', 'Duzib268G1359' => 'dzi', 'ECA232G3929' => 'eca', 'ECA236G2210' => 'eca', 'ECA236G2287' => 'eca', 'ECA240G4568' => 'eca', 'ECA247G0894' => 'eca', 'EL10Ac1g00200' => 'bvu', 'EL10Ac1g00886' => 'bvu', 'EL10As1g23091' => 'bvu', 'EL10As1g23092' => 'bvu', 'Eucgr.A01284' => 'egr', 'Eucgr.A01285' => 'egr', 'Eucgr.D02456' => 'egr', 'Eucgr.E00018' => 'egr', 'Eucgr.E01439' => 'egr', 'Eucgr.G02859' => 'egr', 'FAN01G0168' => 'fan', 'FAN01G0453' => 'fan', 'FAN01G2761' => 'fan', 'FAN02G1239' => 'fan', 'FAN03G0645' => 'fan', 'FAN03G2707' => 'fan', 'FAN03G2978' => 'fan', 'FAN04G0227' => 'fan', 'FAN06G0091' => 'fan', 'FAN06G1418' => 'fan', 'FAN06G1512' => 'fan', 'FAN06G1986' => 'fan', 'FAN06G2905' => 'fan', 'FAN06G4325' => 'fan', 'FAN08G0033' => 'fan', 'FAN09G0642' => 'fan', 'FAN10G1763' => 'fan', 'FAN10G2026' => 'fan', 'FAN10G2513' => 'fan', 'FAN10G3402' => 'fan', 'FAN10G3564' => 'fan', 'FAN10G3987' => 'fan', 'FAN13G1490' => 'fan', 'FAN14G5857' => 'fan', 'FAN18G1188' => 'fan', 'FvH4_5g00750' => 'fve', 'FvH4_6g13410' => 'fve', 'FvH4_7g11740' => 'fve', 'FvH4_7g17410' => 'fve', 'FvH4_7g18860' => 'fve', 'Glyma.01G099100' => 'gma', 'Glyma.01G142300' => 'gma', 'Glyma.03G025500' => 'gma', 'Glyma.03G069700' => 'gma', 'Glyma.03G260000' => 'gma', 'Glyma.09G269800' => 'gma', 'Glyma.10G208700' => 'gma', 'Glyma.18G220400' => 'gma', 'Glyma.20G182000' => 'gma', 'Gohir.A01G221726' => 'ghi', 'Gohir.A07G134600' => 'ghi', 'Gohir.A07G146000' => 'ghi', 'Gohir.A08G173900' => 'ghi', 'Gohir.A09G194900' => 'ghi', 'Gohir.A10G204100' => 'ghi', 'Gohir.A11G080600' => 'ghi', 'Gohir.A11G327500' => 'ghi', 'Gohir.A12G101800' => 'ghi', 'Gohir.D01G211200' => 'ghi', 'Gohir.D07G139200' => 'ghi', 'Gohir.D07G152100' => 'ghi', 'Gohir.D08G192600' => 'ghi', 'Gohir.D09G189200' => 'ghi', 'Gohir.D10G212000' => 'ghi', 'Gohir.D11G085200' => 'ghi', 'Gohir.D11G346400' => 'ghi', 'Gohir.D12G104800' => 'ghi', 'Gorai.001G151300' => 'gra', 'Gorai.001G174100' => 'gra', 'Gorai.002G257000' => 'gra', 'Gorai.004G202600' => 'gra', 'Gorai.007G090900' => 'gra', 'Gorai.007G376700' => 'gra', 'Gorai.008G114100' => 'gra', 'Gorai.011G237900' => 'gra', 'GSVIVG01005450001' => 'vvi', 'GSVIVG01016232001' => 'vvi', 'GSVIVG01026157001' => 'vvi', 'GSVIVG01027419001' => 'vvi', 'GSVIVG01027631001' => 'vvi', 'GSVIVG01034143001' => 'vvi', 'HanXRQChr03g0093921' => 'han', 'HanXRQChr04g0120001' => 'han', 'HanXRQChr04g0122561' => 'han', 'HanXRQChr09g0246851' => 'han', 'HanXRQChr10g0293311' => 'han', 'HanXRQChr13g0425231' => 'han', 'HanXRQChr16g0532571' => 'han', 'Haze_09050' => 'cav', 'Haze_15715' => 'cav', 'Haze_15716' => 'cav', 'Haze_16803' => 'cav', 'Haze_16850' => 'cav', 'Hma1.2p1_0301F.1_g118655' => 'hma', 'Hma1.2p1_0309F.1_g120590' => 'hma', 'Hma1.2p1_0936F.1_g238900' => 'hma', 'Hma1.2p1_3552F.1_g336740' => 'hma', 'HPP92_003520' => 'vpl', 'HPP92_006628' => 'vpl', 'HPP92_006645' => 'vpl', 'HPP92_014669' => 'vpl', 'HPP92_015077' => 'vpl', 'Hund16742' => 'sun', 'Hund17022' => 'sun', 'Lalb_Chr02g0152131' => 'lal', 'Lalb_Chr05g0225371' => 'lal', 'Lalb_Chr07g0189841' => 'lal', 'Lalb_Chr07g0192961' => 'lal', 'Lalb_Chr12g0208221' => 'lal', 'Lalb_Chr13g0291211' => 'lal', 'Lalb_Chr13g0291781' => 'lal', 'Lalb_Chr18g0044651' => 'lal', 'Lalb_Chr21g0313731' => 'lal', 'Lj1g0022533' => 'lja', 'Lj2A18T50' => 'lonja', 'Lj2A92G93' => 'lonja', 'Lj3A965T73' => 'lonja', 'Lj3g0000673' => 'lja', 'Lj3g0002666' => 'lja', 'Lj4g0016985' => 'lja', 'Lj5g0003625' => 'lja', 'Lj7A529G36' => 'lonja', 'Lj9A569T49' => 'lonja', 'Lj9A604T63' => 'lonja', 'Lsat_1_v5_gn_3_132060' => 'lsa', 'Lsat_1_v5_gn_4_68941' => 'lsa', 'Lsat_1_v5_gn_5_95580' => 'lsa', 'Lsat_1_v5_gn_7_161' => 'lsa', 'Lsat_1_v5_gn_7_7041' => 'lsa', 'Lsat_1_v5_gn_9_33481' => 'lsa', 'Lsat_1_v5_gn_9_68260' => 'lsa', 'Manes.01G073100' => 'mes', 'Manes.01G266300' => 'mes', 'Manes.02G033300' => 'mes', 'Manes.05G017900' => 'mes', 'Manes.05G046100' => 'mes', 'Manes.08G080900' => 'mes', 'Manes.10G049400' => 'mes', 'Mapoly0009s0186' => 'mpo', 'Mapoly0036s0118' => 'mpo', 'Mapoly0101s0046' => 'mpo', 'MBI04_g30218_MAGBIO' => 'mbi', 'MBI04_g35564_MAGBIO' => 'mbi', 'MBI12_g34011_MAGBIO' => 'mbi', 'MBI14_g04655_MAGBIO' => 'mbi', 'MCO07G653' => 'mco', 'MCO10G173' => 'mco', 'MD01G1087100' => 'mdo', 'MD01G1104200' => 'mdo', 'MD02G1205100' => 'mdo', 'MD04G1079200' => 'mdo', 'MD04G1131400' => 'mdo', 'MD07G1121600' => 'mdo', 'MD07G1157300' => 'mdo', 'MD07G1171000' => 'mdo', 'MD12G1144500' => 'mdo', 'Medtr1g094610' => 'mtr', 'Medtr4g021795' => 'mtr', 'Medtr4g023760' => 'mtr', 'Medtr7g118050' => 'mtr', 'MELO3C005582.2' => 'cme', 'MELO3C005989.2' => 'cme', 'MELO3C006192.2' => 'cme', 'MELO3C009248.2' => 'cme', 'MELO3C019817.2' => 'cme', 'Migut.B01625' => 'egut', 'Migut.B01915' => 'egut', 'Migut.F01721' => 'egut', 'Migut.J00314' => 'egut', 'MSTRG.20742' => 'ama', 'MSTRG.8134' => 'ama', 'Nitab4.5_0000096g0010' => 'nta', 'Nitab4.5_0000202g0030' => 'nta', 'Nitab4.5_0000216g0370' => 'nta', 'Nitab4.5_0000457g0230' => 'nta', 'Nitab4.5_0001702g0170' => 'nta', 'Nitab4.5_0003607g0010' => 'nta', 'Nitab4.5_0004917g0020' => 'nta', 'Nitab4.5_0007059g0010' => 'nta', 'Nitab4.5_0007184g0010' => 'nta', 'Nitab4.5_0007346g0020' => 'nta', 'Nn1g00410' => 'nnu', 'Nn1g01252' => 'nnu', 'Nn2g11168' => 'nnu', 'Nn2g13403' => 'nnu', 'Nn2g13760' => 'nnu', 'Nn4g26380' => 'nnu', 'Oeu000806.2' => 'oeu', 'Oeu005788.1' => 'oeu', 'Oeu006900.3' => 'oeu', 'Oeu007797.1' => 'oeu', 'Oeu011932.1' => 'oeu', 'Oeu022739.1' => 'oeu', 'Oeu037918.1' => 'oeu', 'Oeu055490.2' => 'oeu', 'Os01g0844400' => 'osa', 'Os02g0819100' => 'osa', 'Os03g0804300' => 'osa', 'Os05g0458000' => 'osa', 'Os07g0467800' => 'osa', 'Os12g0602200' => 'osa', 'Peaxi162Scf00013g03444' => 'pax', 'Peaxi162Scf00094g01120' => 'pax', 'Peaxi162Scf00191g01211' => 'pax', 'Peaxi162Scf00238g01110' => 'pax', 'Peaxi162Scf00330g00719' => 'pax', 'Peaxi162Scf00627g00018' => 'pax', 'PGR031G2686' => 'pgr', 'PGR042G0809' => 'pgr', 'PGR142G0193' => 'pgr', 'PGSC0003DMG400011066' => 'stu', 'PGSC0003DMG400012041' => 'stu', 'PGSC0003DMG400013678' => 'stu', 'PGSC0003DMG400023477' => 'stu', 'PGSC0003DMG400025956' => 'stu', 'PGSC0003DMG401019151' => 'stu', 'Phvul.006G116400' => 'pvu', 'Phvul.007G097300' => 'pvu', 'Phvul.010G015000' => 'pvu', 'Phvul.010G083900' => 'pvu', 'Potri.001G117100' => 'ptr', 'Potri.002G147300' => 'ptr', 'Potri.003G115600' => 'ptr', 'Potri.006G087400' => 'ptr', 'Potri.010G226100' => 'ptr', 'Potri.014G069200' => 'ptr', 'Potri.014G104000' => 'ptr', 'Potri.016G100200' => 'ptr', 'Pp3c10_20450' => 'ppa', 'Pp3c1_42400' => 'ppa', 'Pp3c3_24390' => 'ppa', 'Pp3c3_2860' => 'ppa', 'PRCOL_00003193' => 'pco', 'Prupe.2G144500' => 'ppe', 'Prupe.2G195700' => 'ppe', 'Prupe.2G209800' => 'ppe', 'Prupe.5G080000' => 'ppe', 'Prupe.6G257900' => 'ppe', 'Psat3g001160' => 'psa', 'Psat6g181880' => 'psa', 'Psat7g233720' => 'psa', 'PSO063G7587' => 'pso', 'PSO339G2145' => 'pso', 'PSO339G3369' => 'pso', 'PSO478G2747' => 'pso', 'PSO513G0140' => 'pso', 'PSO782G1614' => 'pso', 'PSO782G4889' => 'pso', 'PSO782G5485' => 'pso', 'PSO801G0241' => 'pso', 'QL07p048854' => 'qlo', 'QL08p046745' => 'qlo', 'QL08p052606' => 'qlo', 'QL08p053414' => 'qlo', 'QL08p054868' => 'qlo', 'RcHm_v2.0_Chr1g0350251' => 'rch', 'RcHm_v2.0_Chr1g0360851' => 'rch', 'RcHm_v2.0_Chr1g0362791' => 'rch', 'RcHm_v2.0_Chr3g0466281' => 'rch', 'RcHm_v2.0_Chr7g0201481' => 'rch', 'Rhsim01G0148600' => 'rsi', 'Rhsim05G0194400' => 'rsi', 'Rhsim07G0000700' => 'rsi', 'Rhsim07G0000800' => 'rsi', 'Rhsim07G0027900' => 'rsi', 'Rhsim09G0149500' => 'rsi', 'RhsimUnG0186900' => 'rsi', 'Sabra01G0089900' => 'sbr', 'Sabra02G0114700' => 'sbr', 'Sabra02G0116300' => 'sbr', 'Sabra03G0080100' => 'sbr', 'Sabra08G0024300' => 'sbr', 'Sabra10G0174300' => 'sbr', 'Sabra14G0048900' => 'sbr', 'Sabra14G0076500' => 'sbr', 'SalBow5G2513' => 'sbo', 'Sc01g0002300' => 'sci', 'Sc01g0004450' => 'sci', 'Sc06g0001680' => 'sci', 'Sc23g0003580' => 'sci', 'Sed0000913' => 'sed', 'Sed0001655' => 'sed', 'Sed0007745' => 'sed', 'Sed0010951' => 'sed', 'Sed0017599' => 'sed', 'Sed0021405' => 'sed', 'Sed0022810' => 'sed', 'SEGI_07099' => 'sgi', 'SEGI_11931' => 'sgi', 'SEGI_13187' => 'sgi', 'SEGI_29958' => 'sgi', 'SEGI_36351' => 'sgi', 'SGA_v2.0_scaffold126G33770' => 'sas', 'SGA_v2.0_scaffold153G37003' => 'sas', 'SGA_v2.0_scaffold2G01359' => 'sas', 'SGA_v2.0_scaffold5G03064' => 'sas', 'SGA_v2.0_scaffold95G28903' => 'sas', 'SHI12701' => 'shi', 'SHI26410' => 'shi', 'SHI38997' => 'shi', 'SHI53759' => 'shi', 'SHI53886' => 'shi', 'SHI54714' => 'shi', 'SMO011G0041' => 'smo', 'SMO146G0251' => 'smo', 'SMO160G0004' => 'smo', 'SMO174G0057' => 'smo', 'SMO244G0089' => 'smo', 'SMO296G0011' => 'smo', 'Solyc01g091280.3' => 'sly', 'Solyc05g047610.3' => 'sly', 'Solyc05g047640.3' => 'sly', 'Solyc05g055630.3' => 'sly', 'Solyc10g018160.2' => 'sly', 'Solyc10g084820.2' => 'sly', 'Solyc10g086565.2' => 'sly', 'Sopen01g037030' => 'spe', 'Sopen05g027920' => 'spe', 'Sopen05g034070' => 'spe', 'Sopen10g007260' => 'spe', 'Sopen10g034260' => 'spe', 'Sopen10g035950' => 'spe', 'Sp3g07710' => 'spa', 'Sp4g27420' => 'spa', 'Sp5g02450' => 'spa', 'Sp6g01280' => 'spa', 'Sp6g38480' => 'spa', 'Sp7g20780' => 'spa', 'TAR374G1413' => 'tar', 'TAR623G1777' => 'tar', 'TAR629G2370' => 'tar', 'TAR633G1759' => 'tar', 'TAR636G3387' => 'tar', 'THA.LOC104802447' => 'tha', 'THA.LOC104813916' => 'tha', 'THA.LOC104816423' => 'tha', 'THA.LOC104817246' => 'tha', 'THA.LOC104825895' => 'tha', 'Thecc.01G335200' => 'tca', 'Thecc.01G377400' => 'tca', 'Thecc.03G262200' => 'tca', 'Thecc.05G036800' => 'tca', 'Thecc.10G080500' => 'tca', 'Thecc.10G080800' => 'tca', 'Thhalv10001560m.g' => 'esa', 'Thhalv10006120m.g' => 'esa', 'Thhalv10014375m.g' => 'esa', 'Thhalv10021264m.g' => 'esa', 'Thhalv10028856m.g' => 'esa', 'TPR.G1914' => 'tpr', 'TPR.G4757' => 'tpr', 'TPR.G5595' => 'tpr', 'TWI14G0952' => 'twi', 'TWI14G1307' => 'twi', 'TWI38G2143' => 'twi', 'TWI59G0826' => 'twi', 'TWI77G0527' => 'twi', 'TWI81G0150' => 'twi', 'unitig_21.g21018' => 'ugi', 'unitig_26.g9725' => 'ugi', 'unitig_744.g24653' => 'ugi', 'unitig_749.g13778' => 'ugi', 'unitig_899.g15035' => 'ugi', 'vmacro04296' => 'vma', 'vmacro04852' => 'vma', 'vmacro13404' => 'vma', 'vmacro20169' => 'vma', 'vmacro21014' => 'vma', 'VMungo0331G0237' => 'vmu', 'VMungo0331G0706' => 'vmu', 'VMungo0331G1361' => 'vmu', 'VMungo0331G1489' => 'vmu', 'VMungo0540G1037' => 'vmu', 'VMungo0720G2487' => 'vmu', 'VMungo0720G2721' => 'vmu', 'Zm00001eb086860' => 'zma', 'Zm00001eb104760' => 'zma', 'Zm00001eb148220' => 'zma', 'Zm00001eb259030' => 'zma', 'Zm00001eb289590' => 'zma', 'Zm00001eb420150' => 'zma' ) $gf_id = 'HOM05D000968' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000968' ) $data_identifier = 'HOM05D000968' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 19, 'bol' => (int) 9, 'bra' => (int) 12, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 5, 'ccan' => (int) 7, 'cde' => (int) 5, 'cfa' => (int) 8, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 4, 'dca' => (int) 5, 'din' => (int) 5, 'dzi' => (int) 12, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 25, 'fve' => (int) 5, 'gma' => (int) 9, 'ghi' => (int) 18, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 7, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 5, 'sun' => (int) 2, 'lal' => (int) 9, 'lja' => (int) 5, 'lonja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 9, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 2, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 3, 'stu' => (int) 6, 'pvu' => (int) 4, 'ptr' => (int) 8, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 3, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 1, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 5, 'sas' => (int) 5, 'shi' => (int) 6, 'smo' => (int) 6, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 3, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420150' $species_info = array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ) $local_species = 'ugi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000968', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p31690' => 'bna', 'A03p36040' => 'bna', 'A03p53730' => 'bna', 'A04p01410' => 'bna', 'A05p05420' => 'bna', 'A05p39630' => 'bna', 'A05p39640' => 'bna', 'A09p00970' => 'bna', 'A09p53060' => 'bna', 'A10p31890' => 'bna', 'Aa31LG10G15040' => 'aar', 'Aa31LG1G21090' => 'aar', 'Aa31LG1G26900' => 'aar', 'Aa31LG3G1820' => 'aar', 'Aa31LG5G1100' => 'aar', 'Aa31LG6G4740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2265' => 'aag', 'Actinidia07998' => 'ach', 'Actinidia11266' => 'ach', 'Actinidia12682' => 'ach', 'Actinidia26479' => 'ach', 'Actinidia31406' => 'ach', 'Actinidia32437' => 'ach', 'Actinidia38862' => 'ach', 'Ah.05g174230' => 'amhyb', 'Ah.05g179070' => 'amhyb', 'Ah.05g179090' => 'amhyb', 'Ah.12g059950' => 'amhyb', 'AL3G20480' => 'aly', 'AL4G44520' => 'aly', 'AL5G43110' => 'aly', 'AL6G13890' => 'aly', 'AL6G52620' => 'aly', 'AL7G30830' => 'aly', 'Aqoxy1G00899' => 'aox', 'Aqoxy5G04333' => 'aox', 'Aqoxy7G00641' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3IZ0NN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4EF6AW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W9P8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79GA3M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C43NQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFCU6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G95YVJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCHK29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LU1UG8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX91RN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGB4B1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8DA0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9H7JI' => 'arhy', 'AT3G09320' => 'ath', 'AT3G60800' => 'ath', 'AT4G00840' => 'ath', 'AT4G22750' => 'ath', 'AT5G04270' => 'ath', 'ATR0090G003' => 'atr', 'ATR0559G349' => 'atr', 'ATR0680G261' => 'atr', 'ATR0810G048' => 'atr', 'Atru.chr12.831' => 'acertr', 'Atru.chr5.303' => 'acertr', 'Atru.chr5.748' => 'acertr', 'Atru.chr8.1999' => 'acertr', 'Atru.chr9.1436' => 'acertr', 'AUR62004211' => 'cqu', 'AUR62004548' => 'cqu', 'AUR62013637' => 'cqu', 'AUR62022662' => 'cqu', 'AUR62025777' => 'cqu', 'AUR62042386' => 'cqu', 'BcaB01g02310' => 'bca', 'BcaB01g06062' => 'bca', 'BcaB02g08975' => 'bca', 'BcaB02g08980' => 'bca', 'BcaC01g04228' => 'bca', 'BcaC01g06830' => 'bca', 'BcaC02g10186' => 'bca', 'BcaC02g12214' => 'bca', 'BcaC04g24101' => 'bca', 'BcaC05g29520' => 'bca', 'BcaC05g29661' => 'bca', 'BcaC06g32130' => 'bca', 'BcaC06g32131' => 'bca', 'BcaC07g40601' => 'bca', 'BcaC07g42641' => 'bca', 'BcaNung01038' => 'bca', 'BcaNung01676' => 'bca', 'BcaNung02480' => 'bca', 'BcaNung07376' => 'bca', 'BolC3t16146H' => 'bol', 'BolC3t16637H' => 'bol', 'BolC4t22257H' => 'bol', 'BolC4t24728H' => 'bol', 'BolC5t34517H' => 'bol', 'BolC7t45703H' => 'bol', 'BolC8t51166H' => 'bol', 'BolC9t53038H' => 'bol', 'BolC9t60000H' => 'bol', 'BraA01t01345Z' => 'bra', 'BraA01t01346Z' => 'bra', 'BraA01t01348Z' => 'bra', 'BraA03t12347Z' => 'bra', 'BraA03t12775Z' => 'bra', 'BraA03t14439Z' => 'bra', 'BraA04t15860Z' => 'bra', 'BraA05t19511Z' => 'bra', 'BraA05t22746Z' => 'bra', 'BraA09t35767Z' => 'bra', 'BraA09t40732Z' => 'bra', 'BraA10t45233Z' => 'bra', 'C03p38720' => 'bna', 'C03p43680' => 'bna', 'C04p06350' => 'bna', 'C04p31800' => 'bna', 'C05p58680' => 'bna', 'C07p52110' => 'bna', 'C08p35760' => 'bna', 'C09p01050' => 'bna', 'C09p72600' => 'bna', 'CAN.G106.2' => 'can', 'CAN.G1482.1' => 'can', 'CAN.G324.12' => 'can', 'CAN.G388.20' => 'can', 'CAN.G412.7' => 'can', 'CAN.G694.32' => 'can', 'CAN.G92.12' => 'can', 'CANSAT11G2353' => 'cansat', 'CANSAT21G1398' => 'cansat', 'CANSAT56G2456' => 'cansat', 'CANSAT56G3031' => 'cansat', 'CANSAT56G4539' => 'cansat', 'CARHR083680' => 'chi', 'CARHR171190' => 'chi', 'CARHR209010' => 'chi', 'CARHR229680' => 'chi', 'CARHR249490' => 'chi', 'Carub.0003s0844' => 'cru', 'Carub.0005s2755' => 'cru', 'Carub.0006s0322' => 'cru', 'Carub.0006s3586' => 'cru', 'Carub.0007s1855' => 'cru', 'Ca_07808_v3' => 'car', 'Ca_09535_v3' => 'car', 'Ca_10548_v3' => 'car', 'Ca_19913_v3' => 'car', 'Ca_19916_v3' => 'car', 'Ca_19975_v3' => 'car', 'CBR_g22876' => 'cbr', 'CBR_g22879' => 'cbr', 'CBR_g38491' => 'cbr', 'CBR_g54185' => 'cbr', 'CBR_g54190' => 'cbr', 'Cc02_g11020' => 'ccan', 'Cc02_g23920' => 'ccan', 'Cc02_g39860' => 'ccan', 'Cc02_g39870' => 'ccan', 'Cc03_g06760' => 'ccan', 'Cc06_g02450' => 'ccan', 'Cc09_g09450' => 'ccan', 'CDE02G1959' => 'cde', 'CDE04G0600' => 'cde', 'CDE07G1996' => 'cde', 'CDE07G2078' => 'cde', 'CDE11G0611' => 'cde', 'Cfa001683' => 'cfa', 'Cfa001734' => 'cfa', 'Cfa001737' => 'cfa', 'Cfa003751' => 'cfa', 'Cfa012019' => 'cfa', 'Cfa017353' => 'cfa', 'Cfa017732' => 'cfa', 'Cfa022464' => 'cfa', 'Ciclev10012400m.g' => 'ccl', 'Ciclev10021242m.g' => 'ccl', 'Ciclev10021302m.g' => 'ccl', 'Ciclev10021463m.g' => 'ccl', 'Ciclev10032359m.g' => 'ccl', 'CiPaw.01G081000' => 'cil', 'CiPaw.01G262500' => 'cil', 'CiPaw.01G269800' => 'cil', 'CiPaw.02G168400' => 'cil', 'CiPaw.05G119500' => 'cil', 'CiPaw.11G147300' => 'cil', 'ClCG01G003630' => 'cla', 'ClCG05G000510' => 'cla', 'ClCG05G002300' => 'cla', 'ClCG08G007650' => 'cla', 'ClCG10G021250' => 'cla', 'COL.COLO4_06218' => 'col', 'COL.COLO4_12538' => 'col', 'COL.COLO4_14775' => 'col', 'COL.COLO4_23875' => 'col', 'Cpa.g.sc141.16' => 'cpa', 'Cpa.g.sc169.16' => 'cpa', 'Cpa.g.sc244.4' => 'cpa', 'Cpa.g.sc244.5' => 'cpa', 'Cpa.g.sc29.87' => 'cpa', 'Cpa.g.sc53.115' => 'cpa', 'Cre03.g207502' => 'cre', 'Cre06.g277000' => 'cre', 'Cre09.g394050' => 'cre', 'CsaV3_3G007680' => 'csa', 'CsaV3_3G009710' => 'csa', 'CsaV3_3G034790' => 'csa', 'CsaV3_5G003750' => 'csa', 'CsaV3_6G036620' => 'csa', 'CSS0002288' => 'camsi', 'CSS0011250' => 'camsi', 'CSS0021619' => 'camsi', 'CSS0046701' => 'camsi', 'DCAR_006420' => 'dca', 'DCAR_006865' => 'dca', 'DCAR_008558' => 'dca', 'DCAR_028754' => 'dca', 'DCAR_028755' => 'dca', 'Dinv31218' => 'din', 'Dinv32371' => 'din', 'Dinv34250' => 'din', 'Dinv37156' => 'din', 'Dinv43704' => 'din', 'Duzib093G1811' => 'dzi', 'Duzib106G1622' => 'dzi', 'Duzib114G0504' => 'dzi', 'Duzib128G0338' => 'dzi', 'Duzib128G1577' => 'dzi', 'Duzib133G0104' => 'dzi', 'Duzib133G1080' => 'dzi', 'Duzib138G0324' => 'dzi', 'Duzib138G0394' => 'dzi', 'Duzib205G0122' => 'dzi', 'Duzib268G1020' => 'dzi', 'Duzib268G1359' => 'dzi', 'ECA232G3929' => 'eca', 'ECA236G2210' => 'eca', 'ECA236G2287' => 'eca', 'ECA240G4568' => 'eca', 'ECA247G0894' => 'eca', 'EL10Ac1g00200' => 'bvu', 'EL10Ac1g00886' => 'bvu', 'EL10As1g23091' => 'bvu', 'EL10As1g23092' => 'bvu', 'Eucgr.A01284' => 'egr', 'Eucgr.A01285' => 'egr', 'Eucgr.D02456' => 'egr', 'Eucgr.E00018' => 'egr', 'Eucgr.E01439' => 'egr', 'Eucgr.G02859' => 'egr', 'FAN01G0168' => 'fan', 'FAN01G0453' => 'fan', 'FAN01G2761' => 'fan', 'FAN02G1239' => 'fan', 'FAN03G0645' => 'fan', 'FAN03G2707' => 'fan', 'FAN03G2978' => 'fan', 'FAN04G0227' => 'fan', 'FAN06G0091' => 'fan', 'FAN06G1418' => 'fan', 'FAN06G1512' => 'fan', 'FAN06G1986' => 'fan', 'FAN06G2905' => 'fan', 'FAN06G4325' => 'fan', 'FAN08G0033' => 'fan', 'FAN09G0642' => 'fan', 'FAN10G1763' => 'fan', 'FAN10G2026' => 'fan', 'FAN10G2513' => 'fan', 'FAN10G3402' => 'fan', 'FAN10G3564' => 'fan', 'FAN10G3987' => 'fan', 'FAN13G1490' => 'fan', 'FAN14G5857' => 'fan', 'FAN18G1188' => 'fan', 'FvH4_5g00750' => 'fve', 'FvH4_6g13410' => 'fve', 'FvH4_7g11740' => 'fve', 'FvH4_7g17410' => 'fve', 'FvH4_7g18860' => 'fve', 'Glyma.01G099100' => 'gma', 'Glyma.01G142300' => 'gma', 'Glyma.03G025500' => 'gma', 'Glyma.03G069700' => 'gma', 'Glyma.03G260000' => 'gma', 'Glyma.09G269800' => 'gma', 'Glyma.10G208700' => 'gma', 'Glyma.18G220400' => 'gma', 'Glyma.20G182000' => 'gma', 'Gohir.A01G221726' => 'ghi', 'Gohir.A07G134600' => 'ghi', 'Gohir.A07G146000' => 'ghi', 'Gohir.A08G173900' => 'ghi', 'Gohir.A09G194900' => 'ghi', 'Gohir.A10G204100' => 'ghi', 'Gohir.A11G080600' => 'ghi', 'Gohir.A11G327500' => 'ghi', 'Gohir.A12G101800' => 'ghi', 'Gohir.D01G211200' => 'ghi', 'Gohir.D07G139200' => 'ghi', 'Gohir.D07G152100' => 'ghi', 'Gohir.D08G192600' => 'ghi', 'Gohir.D09G189200' => 'ghi', 'Gohir.D10G212000' => 'ghi', 'Gohir.D11G085200' => 'ghi', 'Gohir.D11G346400' => 'ghi', 'Gohir.D12G104800' => 'ghi', 'Gorai.001G151300' => 'gra', 'Gorai.001G174100' => 'gra', 'Gorai.002G257000' => 'gra', 'Gorai.004G202600' => 'gra', 'Gorai.007G090900' => 'gra', 'Gorai.007G376700' => 'gra', 'Gorai.008G114100' => 'gra', 'Gorai.011G237900' => 'gra', 'GSVIVG01005450001' => 'vvi', 'GSVIVG01016232001' => 'vvi', 'GSVIVG01026157001' => 'vvi', 'GSVIVG01027419001' => 'vvi', 'GSVIVG01027631001' => 'vvi', 'GSVIVG01034143001' => 'vvi', 'HanXRQChr03g0093921' => 'han', 'HanXRQChr04g0120001' => 'han', 'HanXRQChr04g0122561' => 'han', 'HanXRQChr09g0246851' => 'han', 'HanXRQChr10g0293311' => 'han', 'HanXRQChr13g0425231' => 'han', 'HanXRQChr16g0532571' => 'han', 'Haze_09050' => 'cav', 'Haze_15715' => 'cav', 'Haze_15716' => 'cav', 'Haze_16803' => 'cav', 'Haze_16850' => 'cav', 'Hma1.2p1_0301F.1_g118655' => 'hma', 'Hma1.2p1_0309F.1_g120590' => 'hma', 'Hma1.2p1_0936F.1_g238900' => 'hma', 'Hma1.2p1_3552F.1_g336740' => 'hma', 'HPP92_003520' => 'vpl', 'HPP92_006628' => 'vpl', 'HPP92_006645' => 'vpl', 'HPP92_014669' => 'vpl', 'HPP92_015077' => 'vpl', 'Hund16742' => 'sun', 'Hund17022' => 'sun', 'Lalb_Chr02g0152131' => 'lal', 'Lalb_Chr05g0225371' => 'lal', 'Lalb_Chr07g0189841' => 'lal', 'Lalb_Chr07g0192961' => 'lal', 'Lalb_Chr12g0208221' => 'lal', 'Lalb_Chr13g0291211' => 'lal', 'Lalb_Chr13g0291781' => 'lal', 'Lalb_Chr18g0044651' => 'lal', 'Lalb_Chr21g0313731' => 'lal', 'Lj1g0022533' => 'lja', 'Lj2A18T50' => 'lonja', 'Lj2A92G93' => 'lonja', 'Lj3A965T73' => 'lonja', 'Lj3g0000673' => 'lja', 'Lj3g0002666' => 'lja', 'Lj4g0016985' => 'lja', 'Lj5g0003625' => 'lja', 'Lj7A529G36' => 'lonja', 'Lj9A569T49' => 'lonja', 'Lj9A604T63' => 'lonja', 'Lsat_1_v5_gn_3_132060' => 'lsa', 'Lsat_1_v5_gn_4_68941' => 'lsa', 'Lsat_1_v5_gn_5_95580' => 'lsa', 'Lsat_1_v5_gn_7_161' => 'lsa', 'Lsat_1_v5_gn_7_7041' => 'lsa', 'Lsat_1_v5_gn_9_33481' => 'lsa', 'Lsat_1_v5_gn_9_68260' => 'lsa', 'Manes.01G073100' => 'mes', 'Manes.01G266300' => 'mes', 'Manes.02G033300' => 'mes', 'Manes.05G017900' => 'mes', 'Manes.05G046100' => 'mes', 'Manes.08G080900' => 'mes', 'Manes.10G049400' => 'mes', 'Mapoly0009s0186' => 'mpo', 'Mapoly0036s0118' => 'mpo', 'Mapoly0101s0046' => 'mpo', 'MBI04_g30218_MAGBIO' => 'mbi', 'MBI04_g35564_MAGBIO' => 'mbi', 'MBI12_g34011_MAGBIO' => 'mbi', 'MBI14_g04655_MAGBIO' => 'mbi', 'MCO07G653' => 'mco', 'MCO10G173' => 'mco', 'MD01G1087100' => 'mdo', 'MD01G1104200' => 'mdo', 'MD02G1205100' => 'mdo', 'MD04G1079200' => 'mdo', 'MD04G1131400' => 'mdo', 'MD07G1121600' => 'mdo', 'MD07G1157300' => 'mdo', 'MD07G1171000' => 'mdo', 'MD12G1144500' => 'mdo', 'Medtr1g094610' => 'mtr', 'Medtr4g021795' => 'mtr', 'Medtr4g023760' => 'mtr', 'Medtr7g118050' => 'mtr', 'MELO3C005582.2' => 'cme', 'MELO3C005989.2' => 'cme', 'MELO3C006192.2' => 'cme', 'MELO3C009248.2' => 'cme', 'MELO3C019817.2' => 'cme', 'Migut.B01625' => 'egut', 'Migut.B01915' => 'egut', 'Migut.F01721' => 'egut', 'Migut.J00314' => 'egut', 'MSTRG.20742' => 'ama', 'MSTRG.8134' => 'ama', 'Nitab4.5_0000096g0010' => 'nta', 'Nitab4.5_0000202g0030' => 'nta', 'Nitab4.5_0000216g0370' => 'nta', 'Nitab4.5_0000457g0230' => 'nta', 'Nitab4.5_0001702g0170' => 'nta', 'Nitab4.5_0003607g0010' => 'nta', 'Nitab4.5_0004917g0020' => 'nta', 'Nitab4.5_0007059g0010' => 'nta', 'Nitab4.5_0007184g0010' => 'nta', 'Nitab4.5_0007346g0020' => 'nta', 'Nn1g00410' => 'nnu', 'Nn1g01252' => 'nnu', 'Nn2g11168' => 'nnu', 'Nn2g13403' => 'nnu', 'Nn2g13760' => 'nnu', 'Nn4g26380' => 'nnu', 'Oeu000806.2' => 'oeu', 'Oeu005788.1' => 'oeu', 'Oeu006900.3' => 'oeu', 'Oeu007797.1' => 'oeu', 'Oeu011932.1' => 'oeu', 'Oeu022739.1' => 'oeu', 'Oeu037918.1' => 'oeu', 'Oeu055490.2' => 'oeu', 'Os01g0844400' => 'osa', 'Os02g0819100' => 'osa', 'Os03g0804300' => 'osa', 'Os05g0458000' => 'osa', 'Os07g0467800' => 'osa', 'Os12g0602200' => 'osa', 'Peaxi162Scf00013g03444' => 'pax', 'Peaxi162Scf00094g01120' => 'pax', 'Peaxi162Scf00191g01211' => 'pax', 'Peaxi162Scf00238g01110' => 'pax', 'Peaxi162Scf00330g00719' => 'pax', 'Peaxi162Scf00627g00018' => 'pax', 'PGR031G2686' => 'pgr', 'PGR042G0809' => 'pgr', 'PGR142G0193' => 'pgr', 'PGSC0003DMG400011066' => 'stu', 'PGSC0003DMG400012041' => 'stu', 'PGSC0003DMG400013678' => 'stu', 'PGSC0003DMG400023477' => 'stu', 'PGSC0003DMG400025956' => 'stu', 'PGSC0003DMG401019151' => 'stu', 'Phvul.006G116400' => 'pvu', 'Phvul.007G097300' => 'pvu', 'Phvul.010G015000' => 'pvu', 'Phvul.010G083900' => 'pvu', 'Potri.001G117100' => 'ptr', 'Potri.002G147300' => 'ptr', 'Potri.003G115600' => 'ptr', 'Potri.006G087400' => 'ptr', 'Potri.010G226100' => 'ptr', 'Potri.014G069200' => 'ptr', 'Potri.014G104000' => 'ptr', 'Potri.016G100200' => 'ptr', 'Pp3c10_20450' => 'ppa', 'Pp3c1_42400' => 'ppa', 'Pp3c3_24390' => 'ppa', 'Pp3c3_2860' => 'ppa', 'PRCOL_00003193' => 'pco', 'Prupe.2G144500' => 'ppe', 'Prupe.2G195700' => 'ppe', 'Prupe.2G209800' => 'ppe', 'Prupe.5G080000' => 'ppe', 'Prupe.6G257900' => 'ppe', 'Psat3g001160' => 'psa', 'Psat6g181880' => 'psa', 'Psat7g233720' => 'psa', 'PSO063G7587' => 'pso', 'PSO339G2145' => 'pso', 'PSO339G3369' => 'pso', 'PSO478G2747' => 'pso', 'PSO513G0140' => 'pso', 'PSO782G1614' => 'pso', 'PSO782G4889' => 'pso', 'PSO782G5485' => 'pso', 'PSO801G0241' => 'pso', 'QL07p048854' => 'qlo', 'QL08p046745' => 'qlo', 'QL08p052606' => 'qlo', 'QL08p053414' => 'qlo', 'QL08p054868' => 'qlo', 'RcHm_v2.0_Chr1g0350251' => 'rch', 'RcHm_v2.0_Chr1g0360851' => 'rch', 'RcHm_v2.0_Chr1g0362791' => 'rch', 'RcHm_v2.0_Chr3g0466281' => 'rch', 'RcHm_v2.0_Chr7g0201481' => 'rch', 'Rhsim01G0148600' => 'rsi', 'Rhsim05G0194400' => 'rsi', 'Rhsim07G0000700' => 'rsi', 'Rhsim07G0000800' => 'rsi', 'Rhsim07G0027900' => 'rsi', 'Rhsim09G0149500' => 'rsi', 'RhsimUnG0186900' => 'rsi', 'Sabra01G0089900' => 'sbr', 'Sabra02G0114700' => 'sbr', 'Sabra02G0116300' => 'sbr', 'Sabra03G0080100' => 'sbr', 'Sabra08G0024300' => 'sbr', 'Sabra10G0174300' => 'sbr', 'Sabra14G0048900' => 'sbr', 'Sabra14G0076500' => 'sbr', 'SalBow5G2513' => 'sbo', 'Sc01g0002300' => 'sci', 'Sc01g0004450' => 'sci', 'Sc06g0001680' => 'sci', 'Sc23g0003580' => 'sci', 'Sed0000913' => 'sed', 'Sed0001655' => 'sed', 'Sed0007745' => 'sed', 'Sed0010951' => 'sed', 'Sed0017599' => 'sed', 'Sed0021405' => 'sed', 'Sed0022810' => 'sed', 'SEGI_07099' => 'sgi', 'SEGI_11931' => 'sgi', 'SEGI_13187' => 'sgi', 'SEGI_29958' => 'sgi', 'SEGI_36351' => 'sgi', 'SGA_v2.0_scaffold126G33770' => 'sas', 'SGA_v2.0_scaffold153G37003' => 'sas', 'SGA_v2.0_scaffold2G01359' => 'sas', 'SGA_v2.0_scaffold5G03064' => 'sas', 'SGA_v2.0_scaffold95G28903' => 'sas', 'SHI12701' => 'shi', 'SHI26410' => 'shi', 'SHI38997' => 'shi', 'SHI53759' => 'shi', 'SHI53886' => 'shi', 'SHI54714' => 'shi', 'SMO011G0041' => 'smo', 'SMO146G0251' => 'smo', 'SMO160G0004' => 'smo', 'SMO174G0057' => 'smo', 'SMO244G0089' => 'smo', 'SMO296G0011' => 'smo', 'Solyc01g091280.3' => 'sly', 'Solyc05g047610.3' => 'sly', 'Solyc05g047640.3' => 'sly', 'Solyc05g055630.3' => 'sly', 'Solyc10g018160.2' => 'sly', 'Solyc10g084820.2' => 'sly', 'Solyc10g086565.2' => 'sly', 'Sopen01g037030' => 'spe', 'Sopen05g027920' => 'spe', 'Sopen05g034070' => 'spe', 'Sopen10g007260' => 'spe', 'Sopen10g034260' => 'spe', 'Sopen10g035950' => 'spe', 'Sp3g07710' => 'spa', 'Sp4g27420' => 'spa', 'Sp5g02450' => 'spa', 'Sp6g01280' => 'spa', 'Sp6g38480' => 'spa', 'Sp7g20780' => 'spa', 'TAR374G1413' => 'tar', 'TAR623G1777' => 'tar', 'TAR629G2370' => 'tar', 'TAR633G1759' => 'tar', 'TAR636G3387' => 'tar', 'THA.LOC104802447' => 'tha', 'THA.LOC104813916' => 'tha', 'THA.LOC104816423' => 'tha', 'THA.LOC104817246' => 'tha', 'THA.LOC104825895' => 'tha', 'Thecc.01G335200' => 'tca', 'Thecc.01G377400' => 'tca', 'Thecc.03G262200' => 'tca', 'Thecc.05G036800' => 'tca', 'Thecc.10G080500' => 'tca', 'Thecc.10G080800' => 'tca', 'Thhalv10001560m.g' => 'esa', 'Thhalv10006120m.g' => 'esa', 'Thhalv10014375m.g' => 'esa', 'Thhalv10021264m.g' => 'esa', 'Thhalv10028856m.g' => 'esa', 'TPR.G1914' => 'tpr', 'TPR.G4757' => 'tpr', 'TPR.G5595' => 'tpr', 'TWI14G0952' => 'twi', 'TWI14G1307' => 'twi', 'TWI38G2143' => 'twi', 'TWI59G0826' => 'twi', 'TWI77G0527' => 'twi', 'TWI81G0150' => 'twi', 'unitig_21.g21018' => 'ugi', 'unitig_26.g9725' => 'ugi', 'unitig_744.g24653' => 'ugi', 'unitig_749.g13778' => 'ugi', 'unitig_899.g15035' => 'ugi', 'vmacro04296' => 'vma', 'vmacro04852' => 'vma', 'vmacro13404' => 'vma', 'vmacro20169' => 'vma', 'vmacro21014' => 'vma', 'VMungo0331G0237' => 'vmu', 'VMungo0331G0706' => 'vmu', 'VMungo0331G1361' => 'vmu', 'VMungo0331G1489' => 'vmu', 'VMungo0540G1037' => 'vmu', 'VMungo0720G2487' => 'vmu', 'VMungo0720G2721' => 'vmu', 'Zm00001eb086860' => 'zma', 'Zm00001eb104760' => 'zma', 'Zm00001eb148220' => 'zma', 'Zm00001eb259030' => 'zma', 'Zm00001eb289590' => 'zma', 'Zm00001eb420150' => 'zma' ), 'gf_id' => 'HOM05D000968', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000968' ), 'data_identifier' => 'HOM05D000968', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000968', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p31690' => 'bna', 'A03p36040' => 'bna', 'A03p53730' => 'bna', 'A04p01410' => 'bna', 'A05p05420' => 'bna', 'A05p39630' => 'bna', 'A05p39640' => 'bna', 'A09p00970' => 'bna', 'A09p53060' => 'bna', 'A10p31890' => 'bna', 'Aa31LG10G15040' => 'aar', 'Aa31LG1G21090' => 'aar', 'Aa31LG1G26900' => 'aar', 'Aa31LG3G1820' => 'aar', 'Aa31LG5G1100' => 'aar', 'Aa31LG6G4740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2265' => 'aag', 'Actinidia07998' => 'ach', 'Actinidia11266' => 'ach', 'Actinidia12682' => 'ach', 'Actinidia26479' => 'ach', 'Actinidia31406' => 'ach', 'Actinidia32437' => 'ach', 'Actinidia38862' => 'ach', 'Ah.05g174230' => 'amhyb', 'Ah.05g179070' => 'amhyb', 'Ah.05g179090' => 'amhyb', 'Ah.12g059950' => 'amhyb', 'AL3G20480' => 'aly', 'AL4G44520' => 'aly', 'AL5G43110' => 'aly', 'AL6G13890' => 'aly', 'AL6G52620' => 'aly', 'AL7G30830' => 'aly', 'Aqoxy1G00899' => 'aox', 'Aqoxy5G04333' => 'aox', 'Aqoxy7G00641' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3IZ0NN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4EF6AW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W9P8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79GA3M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C43NQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFCU6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G95YVJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCHK29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LU1UG8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX91RN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGB4B1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8DA0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9H7JI' => 'arhy', 'AT3G09320' => 'ath', 'AT3G60800' => 'ath', 'AT4G00840' => 'ath', 'AT4G22750' => 'ath', 'AT5G04270' => 'ath', 'ATR0090G003' => 'atr', 'ATR0559G349' => 'atr', 'ATR0680G261' => 'atr', 'ATR0810G048' => 'atr', 'Atru.chr12.831' => 'acertr', 'Atru.chr5.303' => 'acertr', 'Atru.chr5.748' => 'acertr', 'Atru.chr8.1999' => 'acertr', 'Atru.chr9.1436' => 'acertr', 'AUR62004211' => 'cqu', 'AUR62004548' => 'cqu', 'AUR62013637' => 'cqu', 'AUR62022662' => 'cqu', 'AUR62025777' => 'cqu', 'AUR62042386' => 'cqu', 'BcaB01g02310' => 'bca', 'BcaB01g06062' => 'bca', 'BcaB02g08975' => 'bca', 'BcaB02g08980' => 'bca', 'BcaC01g04228' => 'bca', 'BcaC01g06830' => 'bca', 'BcaC02g10186' => 'bca', 'BcaC02g12214' => 'bca', 'BcaC04g24101' => 'bca', 'BcaC05g29520' => 'bca', 'BcaC05g29661' => 'bca', 'BcaC06g32130' => 'bca', 'BcaC06g32131' => 'bca', 'BcaC07g40601' => 'bca', 'BcaC07g42641' => 'bca', 'BcaNung01038' => 'bca', 'BcaNung01676' => 'bca', 'BcaNung02480' => 'bca', 'BcaNung07376' => 'bca', 'BolC3t16146H' => 'bol', 'BolC3t16637H' => 'bol', 'BolC4t22257H' => 'bol', 'BolC4t24728H' => 'bol', 'BolC5t34517H' => 'bol', 'BolC7t45703H' => 'bol', 'BolC8t51166H' => 'bol', 'BolC9t53038H' => 'bol', 'BolC9t60000H' => 'bol', 'BraA01t01345Z' => 'bra', 'BraA01t01346Z' => 'bra', 'BraA01t01348Z' => 'bra', 'BraA03t12347Z' => 'bra', 'BraA03t12775Z' => 'bra', 'BraA03t14439Z' => 'bra', 'BraA04t15860Z' => 'bra', 'BraA05t19511Z' => 'bra', 'BraA05t22746Z' => 'bra', 'BraA09t35767Z' => 'bra', 'BraA09t40732Z' => 'bra', 'BraA10t45233Z' => 'bra', 'C03p38720' => 'bna', 'C03p43680' => 'bna', 'C04p06350' => 'bna', 'C04p31800' => 'bna', 'C05p58680' => 'bna', 'C07p52110' => 'bna', 'C08p35760' => 'bna', 'C09p01050' => 'bna', 'C09p72600' => 'bna', 'CAN.G106.2' => 'can', 'CAN.G1482.1' => 'can', 'CAN.G324.12' => 'can', 'CAN.G388.20' => 'can', 'CAN.G412.7' => 'can', 'CAN.G694.32' => 'can', 'CAN.G92.12' => 'can', 'CANSAT11G2353' => 'cansat', 'CANSAT21G1398' => 'cansat', 'CANSAT56G2456' => 'cansat', 'CANSAT56G3031' => 'cansat', 'CANSAT56G4539' => 'cansat', 'CARHR083680' => 'chi', 'CARHR171190' => 'chi', 'CARHR209010' => 'chi', 'CARHR229680' => 'chi', 'CARHR249490' => 'chi', 'Carub.0003s0844' => 'cru', 'Carub.0005s2755' => 'cru', 'Carub.0006s0322' => 'cru', 'Carub.0006s3586' => 'cru', 'Carub.0007s1855' => 'cru', 'Ca_07808_v3' => 'car', 'Ca_09535_v3' => 'car', 'Ca_10548_v3' => 'car', 'Ca_19913_v3' => 'car', 'Ca_19916_v3' => 'car', 'Ca_19975_v3' => 'car', 'CBR_g22876' => 'cbr', 'CBR_g22879' => 'cbr', 'CBR_g38491' => 'cbr', 'CBR_g54185' => 'cbr', 'CBR_g54190' => 'cbr', 'Cc02_g11020' => 'ccan', 'Cc02_g23920' => 'ccan', 'Cc02_g39860' => 'ccan', 'Cc02_g39870' => 'ccan', 'Cc03_g06760' => 'ccan', 'Cc06_g02450' => 'ccan', 'Cc09_g09450' => 'ccan', 'CDE02G1959' => 'cde', 'CDE04G0600' => 'cde', 'CDE07G1996' => 'cde', 'CDE07G2078' => 'cde', 'CDE11G0611' => 'cde', 'Cfa001683' => 'cfa', 'Cfa001734' => 'cfa', 'Cfa001737' => 'cfa', 'Cfa003751' => 'cfa', 'Cfa012019' => 'cfa', 'Cfa017353' => 'cfa', 'Cfa017732' => 'cfa', 'Cfa022464' => 'cfa', 'Ciclev10012400m.g' => 'ccl', 'Ciclev10021242m.g' => 'ccl', 'Ciclev10021302m.g' => 'ccl', 'Ciclev10021463m.g' => 'ccl', 'Ciclev10032359m.g' => 'ccl', 'CiPaw.01G081000' => 'cil', 'CiPaw.01G262500' => 'cil', 'CiPaw.01G269800' => 'cil', 'CiPaw.02G168400' => 'cil', 'CiPaw.05G119500' => 'cil', 'CiPaw.11G147300' => 'cil', 'ClCG01G003630' => 'cla', 'ClCG05G000510' => 'cla', 'ClCG05G002300' => 'cla', 'ClCG08G007650' => 'cla', 'ClCG10G021250' => 'cla', 'COL.COLO4_06218' => 'col', 'COL.COLO4_12538' => 'col', 'COL.COLO4_14775' => 'col', 'COL.COLO4_23875' => 'col', 'Cpa.g.sc141.16' => 'cpa', 'Cpa.g.sc169.16' => 'cpa', 'Cpa.g.sc244.4' => 'cpa', 'Cpa.g.sc244.5' => 'cpa', 'Cpa.g.sc29.87' => 'cpa', 'Cpa.g.sc53.115' => 'cpa', 'Cre03.g207502' => 'cre', 'Cre06.g277000' => 'cre', 'Cre09.g394050' => 'cre', 'CsaV3_3G007680' => 'csa', 'CsaV3_3G009710' => 'csa', 'CsaV3_3G034790' => 'csa', 'CsaV3_5G003750' => 'csa', 'CsaV3_6G036620' => 'csa', 'CSS0002288' => 'camsi', 'CSS0011250' => 'camsi', 'CSS0021619' => 'camsi', 'CSS0046701' => 'camsi', 'DCAR_006420' => 'dca', 'DCAR_006865' => 'dca', 'DCAR_008558' => 'dca', 'DCAR_028754' => 'dca', 'DCAR_028755' => 'dca', 'Dinv31218' => 'din', 'Dinv32371' => 'din', 'Dinv34250' => 'din', 'Dinv37156' => 'din', 'Dinv43704' => 'din', 'Duzib093G1811' => 'dzi', 'Duzib106G1622' => 'dzi', 'Duzib114G0504' => 'dzi', 'Duzib128G0338' => 'dzi', 'Duzib128G1577' => 'dzi', 'Duzib133G0104' => 'dzi', 'Duzib133G1080' => 'dzi', 'Duzib138G0324' => 'dzi', 'Duzib138G0394' => 'dzi', 'Duzib205G0122' => 'dzi', 'Duzib268G1020' => 'dzi', 'Duzib268G1359' => 'dzi', 'ECA232G3929' => 'eca', 'ECA236G2210' => 'eca', 'ECA236G2287' => 'eca', 'ECA240G4568' => 'eca', 'ECA247G0894' => 'eca', 'EL10Ac1g00200' => 'bvu', 'EL10Ac1g00886' => 'bvu', 'EL10As1g23091' => 'bvu', 'EL10As1g23092' => 'bvu', 'Eucgr.A01284' => 'egr', 'Eucgr.A01285' => 'egr', 'Eucgr.D02456' => 'egr', 'Eucgr.E00018' => 'egr', 'Eucgr.E01439' => 'egr', 'Eucgr.G02859' => 'egr', 'FAN01G0168' => 'fan', 'FAN01G0453' => 'fan', 'FAN01G2761' => 'fan', 'FAN02G1239' => 'fan', 'FAN03G0645' => 'fan', 'FAN03G2707' => 'fan', 'FAN03G2978' => 'fan', 'FAN04G0227' => 'fan', 'FAN06G0091' => 'fan', 'FAN06G1418' => 'fan', 'FAN06G1512' => 'fan', 'FAN06G1986' => 'fan', 'FAN06G2905' => 'fan', 'FAN06G4325' => 'fan', 'FAN08G0033' => 'fan', 'FAN09G0642' => 'fan', 'FAN10G1763' => 'fan', 'FAN10G2026' => 'fan', 'FAN10G2513' => 'fan', 'FAN10G3402' => 'fan', 'FAN10G3564' => 'fan', 'FAN10G3987' => 'fan', 'FAN13G1490' => 'fan', 'FAN14G5857' => 'fan', 'FAN18G1188' => 'fan', 'FvH4_5g00750' => 'fve', 'FvH4_6g13410' => 'fve', 'FvH4_7g11740' => 'fve', 'FvH4_7g17410' => 'fve', 'FvH4_7g18860' => 'fve', 'Glyma.01G099100' => 'gma', 'Glyma.01G142300' => 'gma', 'Glyma.03G025500' => 'gma', 'Glyma.03G069700' => 'gma', 'Glyma.03G260000' => 'gma', 'Glyma.09G269800' => 'gma', 'Glyma.10G208700' => 'gma', 'Glyma.18G220400' => 'gma', 'Glyma.20G182000' => 'gma', 'Gohir.A01G221726' => 'ghi', 'Gohir.A07G134600' => 'ghi', 'Gohir.A07G146000' => 'ghi', 'Gohir.A08G173900' => 'ghi', 'Gohir.A09G194900' => 'ghi', 'Gohir.A10G204100' => 'ghi', 'Gohir.A11G080600' => 'ghi', 'Gohir.A11G327500' => 'ghi', 'Gohir.A12G101800' => 'ghi', 'Gohir.D01G211200' => 'ghi', 'Gohir.D07G139200' => 'ghi', 'Gohir.D07G152100' => 'ghi', 'Gohir.D08G192600' => 'ghi', 'Gohir.D09G189200' => 'ghi', 'Gohir.D10G212000' => 'ghi', 'Gohir.D11G085200' => 'ghi', 'Gohir.D11G346400' => 'ghi', 'Gohir.D12G104800' => 'ghi', 'Gorai.001G151300' => 'gra', 'Gorai.001G174100' => 'gra', 'Gorai.002G257000' => 'gra', 'Gorai.004G202600' => 'gra', 'Gorai.007G090900' => 'gra', 'Gorai.007G376700' => 'gra', 'Gorai.008G114100' => 'gra', 'Gorai.011G237900' => 'gra', 'GSVIVG01005450001' => 'vvi', 'GSVIVG01016232001' => 'vvi', 'GSVIVG01026157001' => 'vvi', 'GSVIVG01027419001' => 'vvi', 'GSVIVG01027631001' => 'vvi', 'GSVIVG01034143001' => 'vvi', 'HanXRQChr03g0093921' => 'han', 'HanXRQChr04g0120001' => 'han', 'HanXRQChr04g0122561' => 'han', 'HanXRQChr09g0246851' => 'han', 'HanXRQChr10g0293311' => 'han', 'HanXRQChr13g0425231' => 'han', 'HanXRQChr16g0532571' => 'han', 'Haze_09050' => 'cav', 'Haze_15715' => 'cav', 'Haze_15716' => 'cav', 'Haze_16803' => 'cav', 'Haze_16850' => 'cav', 'Hma1.2p1_0301F.1_g118655' => 'hma', 'Hma1.2p1_0309F.1_g120590' => 'hma', 'Hma1.2p1_0936F.1_g238900' => 'hma', 'Hma1.2p1_3552F.1_g336740' => 'hma', 'HPP92_003520' => 'vpl', 'HPP92_006628' => 'vpl', 'HPP92_006645' => 'vpl', 'HPP92_014669' => 'vpl', 'HPP92_015077' => 'vpl', 'Hund16742' => 'sun', 'Hund17022' => 'sun', 'Lalb_Chr02g0152131' => 'lal', 'Lalb_Chr05g0225371' => 'lal', 'Lalb_Chr07g0189841' => 'lal', 'Lalb_Chr07g0192961' => 'lal', 'Lalb_Chr12g0208221' => 'lal', 'Lalb_Chr13g0291211' => 'lal', 'Lalb_Chr13g0291781' => 'lal', 'Lalb_Chr18g0044651' => 'lal', 'Lalb_Chr21g0313731' => 'lal', 'Lj1g0022533' => 'lja', 'Lj2A18T50' => 'lonja', 'Lj2A92G93' => 'lonja', 'Lj3A965T73' => 'lonja', 'Lj3g0000673' => 'lja', 'Lj3g0002666' => 'lja', 'Lj4g0016985' => 'lja', 'Lj5g0003625' => 'lja', 'Lj7A529G36' => 'lonja', 'Lj9A569T49' => 'lonja', 'Lj9A604T63' => 'lonja', 'Lsat_1_v5_gn_3_132060' => 'lsa', 'Lsat_1_v5_gn_4_68941' => 'lsa', 'Lsat_1_v5_gn_5_95580' => 'lsa', 'Lsat_1_v5_gn_7_161' => 'lsa', 'Lsat_1_v5_gn_7_7041' => 'lsa', 'Lsat_1_v5_gn_9_33481' => 'lsa', 'Lsat_1_v5_gn_9_68260' => 'lsa', 'Manes.01G073100' => 'mes', 'Manes.01G266300' => 'mes', 'Manes.02G033300' => 'mes', 'Manes.05G017900' => 'mes', 'Manes.05G046100' => 'mes', 'Manes.08G080900' => 'mes', 'Manes.10G049400' => 'mes', 'Mapoly0009s0186' => 'mpo', 'Mapoly0036s0118' => 'mpo', 'Mapoly0101s0046' => 'mpo', 'MBI04_g30218_MAGBIO' => 'mbi', 'MBI04_g35564_MAGBIO' => 'mbi', 'MBI12_g34011_MAGBIO' => 'mbi', 'MBI14_g04655_MAGBIO' => 'mbi', 'MCO07G653' => 'mco', 'MCO10G173' => 'mco', 'MD01G1087100' => 'mdo', 'MD01G1104200' => 'mdo', 'MD02G1205100' => 'mdo', 'MD04G1079200' => 'mdo', 'MD04G1131400' => 'mdo', 'MD07G1121600' => 'mdo', 'MD07G1157300' => 'mdo', 'MD07G1171000' => 'mdo', 'MD12G1144500' => 'mdo', 'Medtr1g094610' => 'mtr', 'Medtr4g021795' => 'mtr', 'Medtr4g023760' => 'mtr', 'Medtr7g118050' => 'mtr', 'MELO3C005582.2' => 'cme', 'MELO3C005989.2' => 'cme', 'MELO3C006192.2' => 'cme', 'MELO3C009248.2' => 'cme', 'MELO3C019817.2' => 'cme', 'Migut.B01625' => 'egut', 'Migut.B01915' => 'egut', 'Migut.F01721' => 'egut', 'Migut.J00314' => 'egut', 'MSTRG.20742' => 'ama', 'MSTRG.8134' => 'ama', 'Nitab4.5_0000096g0010' => 'nta', 'Nitab4.5_0000202g0030' => 'nta', 'Nitab4.5_0000216g0370' => 'nta', 'Nitab4.5_0000457g0230' => 'nta', 'Nitab4.5_0001702g0170' => 'nta', 'Nitab4.5_0003607g0010' => 'nta', 'Nitab4.5_0004917g0020' => 'nta', 'Nitab4.5_0007059g0010' => 'nta', 'Nitab4.5_0007184g0010' => 'nta', 'Nitab4.5_0007346g0020' => 'nta', 'Nn1g00410' => 'nnu', 'Nn1g01252' => 'nnu', 'Nn2g11168' => 'nnu', 'Nn2g13403' => 'nnu', 'Nn2g13760' => 'nnu', 'Nn4g26380' => 'nnu', 'Oeu000806.2' => 'oeu', 'Oeu005788.1' => 'oeu', 'Oeu006900.3' => 'oeu', 'Oeu007797.1' => 'oeu', 'Oeu011932.1' => 'oeu', 'Oeu022739.1' => 'oeu', 'Oeu037918.1' => 'oeu', 'Oeu055490.2' => 'oeu', 'Os01g0844400' => 'osa', 'Os02g0819100' => 'osa', 'Os03g0804300' => 'osa', 'Os05g0458000' => 'osa', 'Os07g0467800' => 'osa', 'Os12g0602200' => 'osa', 'Peaxi162Scf00013g03444' => 'pax', 'Peaxi162Scf00094g01120' => 'pax', 'Peaxi162Scf00191g01211' => 'pax', 'Peaxi162Scf00238g01110' => 'pax', 'Peaxi162Scf00330g00719' => 'pax', 'Peaxi162Scf00627g00018' => 'pax', 'PGR031G2686' => 'pgr', 'PGR042G0809' => 'pgr', 'PGR142G0193' => 'pgr', 'PGSC0003DMG400011066' => 'stu', 'PGSC0003DMG400012041' => 'stu', 'PGSC0003DMG400013678' => 'stu', 'PGSC0003DMG400023477' => 'stu', 'PGSC0003DMG400025956' => 'stu', 'PGSC0003DMG401019151' => 'stu', 'Phvul.006G116400' => 'pvu', 'Phvul.007G097300' => 'pvu', 'Phvul.010G015000' => 'pvu', 'Phvul.010G083900' => 'pvu', 'Potri.001G117100' => 'ptr', 'Potri.002G147300' => 'ptr', 'Potri.003G115600' => 'ptr', 'Potri.006G087400' => 'ptr', 'Potri.010G226100' => 'ptr', 'Potri.014G069200' => 'ptr', 'Potri.014G104000' => 'ptr', 'Potri.016G100200' => 'ptr', 'Pp3c10_20450' => 'ppa', 'Pp3c1_42400' => 'ppa', 'Pp3c3_24390' => 'ppa', 'Pp3c3_2860' => 'ppa', 'PRCOL_00003193' => 'pco', 'Prupe.2G144500' => 'ppe', 'Prupe.2G195700' => 'ppe', 'Prupe.2G209800' => 'ppe', 'Prupe.5G080000' => 'ppe', 'Prupe.6G257900' => 'ppe', 'Psat3g001160' => 'psa', 'Psat6g181880' => 'psa', 'Psat7g233720' => 'psa', 'PSO063G7587' => 'pso', 'PSO339G2145' => 'pso', 'PSO339G3369' => 'pso', 'PSO478G2747' => 'pso', 'PSO513G0140' => 'pso', 'PSO782G1614' => 'pso', 'PSO782G4889' => 'pso', 'PSO782G5485' => 'pso', 'PSO801G0241' => 'pso', 'QL07p048854' => 'qlo', 'QL08p046745' => 'qlo', 'QL08p052606' => 'qlo', 'QL08p053414' => 'qlo', 'QL08p054868' => 'qlo', 'RcHm_v2.0_Chr1g0350251' => 'rch', 'RcHm_v2.0_Chr1g0360851' => 'rch', 'RcHm_v2.0_Chr1g0362791' => 'rch', 'RcHm_v2.0_Chr3g0466281' => 'rch', 'RcHm_v2.0_Chr7g0201481' => 'rch', 'Rhsim01G0148600' => 'rsi', 'Rhsim05G0194400' => 'rsi', 'Rhsim07G0000700' => 'rsi', 'Rhsim07G0000800' => 'rsi', 'Rhsim07G0027900' => 'rsi', 'Rhsim09G0149500' => 'rsi', 'RhsimUnG0186900' => 'rsi', 'Sabra01G0089900' => 'sbr', 'Sabra02G0114700' => 'sbr', 'Sabra02G0116300' => 'sbr', 'Sabra03G0080100' => 'sbr', 'Sabra08G0024300' => 'sbr', 'Sabra10G0174300' => 'sbr', 'Sabra14G0048900' => 'sbr', 'Sabra14G0076500' => 'sbr', 'SalBow5G2513' => 'sbo', 'Sc01g0002300' => 'sci', 'Sc01g0004450' => 'sci', 'Sc06g0001680' => 'sci', 'Sc23g0003580' => 'sci', 'Sed0000913' => 'sed', 'Sed0001655' => 'sed', 'Sed0007745' => 'sed', 'Sed0010951' => 'sed', 'Sed0017599' => 'sed', 'Sed0021405' => 'sed', 'Sed0022810' => 'sed', 'SEGI_07099' => 'sgi', 'SEGI_11931' => 'sgi', 'SEGI_13187' => 'sgi', 'SEGI_29958' => 'sgi', 'SEGI_36351' => 'sgi', 'SGA_v2.0_scaffold126G33770' => 'sas', 'SGA_v2.0_scaffold153G37003' => 'sas', 'SGA_v2.0_scaffold2G01359' => 'sas', 'SGA_v2.0_scaffold5G03064' => 'sas', 'SGA_v2.0_scaffold95G28903' => 'sas', 'SHI12701' => 'shi', 'SHI26410' => 'shi', 'SHI38997' => 'shi', 'SHI53759' => 'shi', 'SHI53886' => 'shi', 'SHI54714' => 'shi', 'SMO011G0041' => 'smo', 'SMO146G0251' => 'smo', 'SMO160G0004' => 'smo', 'SMO174G0057' => 'smo', 'SMO244G0089' => 'smo', 'SMO296G0011' => 'smo', 'Solyc01g091280.3' => 'sly', 'Solyc05g047610.3' => 'sly', 'Solyc05g047640.3' => 'sly', 'Solyc05g055630.3' => 'sly', 'Solyc10g018160.2' => 'sly', 'Solyc10g084820.2' => 'sly', 'Solyc10g086565.2' => 'sly', 'Sopen01g037030' => 'spe', 'Sopen05g027920' => 'spe', 'Sopen05g034070' => 'spe', 'Sopen10g007260' => 'spe', 'Sopen10g034260' => 'spe', 'Sopen10g035950' => 'spe', 'Sp3g07710' => 'spa', 'Sp4g27420' => 'spa', 'Sp5g02450' => 'spa', 'Sp6g01280' => 'spa', 'Sp6g38480' => 'spa', 'Sp7g20780' => 'spa', 'TAR374G1413' => 'tar', 'TAR623G1777' => 'tar', 'TAR629G2370' => 'tar', 'TAR633G1759' => 'tar', 'TAR636G3387' => 'tar', 'THA.LOC104802447' => 'tha', 'THA.LOC104813916' => 'tha', 'THA.LOC104816423' => 'tha', 'THA.LOC104817246' => 'tha', 'THA.LOC104825895' => 'tha', 'Thecc.01G335200' => 'tca', 'Thecc.01G377400' => 'tca', 'Thecc.03G262200' => 'tca', 'Thecc.05G036800' => 'tca', 'Thecc.10G080500' => 'tca', 'Thecc.10G080800' => 'tca', 'Thhalv10001560m.g' => 'esa', 'Thhalv10006120m.g' => 'esa', 'Thhalv10014375m.g' => 'esa', 'Thhalv10021264m.g' => 'esa', 'Thhalv10028856m.g' => 'esa', 'TPR.G1914' => 'tpr', 'TPR.G4757' => 'tpr', 'TPR.G5595' => 'tpr', 'TWI14G0952' => 'twi', 'TWI14G1307' => 'twi', 'TWI38G2143' => 'twi', 'TWI59G0826' => 'twi', 'TWI77G0527' => 'twi', 'TWI81G0150' => 'twi', 'unitig_21.g21018' => 'ugi', 'unitig_26.g9725' => 'ugi', 'unitig_744.g24653' => 'ugi', 'unitig_749.g13778' => 'ugi', 'unitig_899.g15035' => 'ugi', 'vmacro04296' => 'vma', 'vmacro04852' => 'vma', 'vmacro13404' => 'vma', 'vmacro20169' => 'vma', 'vmacro21014' => 'vma', 'VMungo0331G0237' => 'vmu', 'VMungo0331G0706' => 'vmu', 'VMungo0331G1361' => 'vmu', 'VMungo0331G1489' => 'vmu', 'VMungo0540G1037' => 'vmu', 'VMungo0720G2487' => 'vmu', 'VMungo0720G2721' => 'vmu', 'Zm00001eb086860' => 'zma', 'Zm00001eb104760' => 'zma', 'Zm00001eb148220' => 'zma', 'Zm00001eb259030' => 'zma', 'Zm00001eb289590' => 'zma', 'Zm00001eb420150' => 'zma' ) $gf_id = 'HOM05D000968' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000968' ) $data_identifier = 'HOM05D000968' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 19, 'bol' => (int) 9, 'bra' => (int) 12, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 5, 'ccan' => (int) 7, 'cde' => (int) 5, 'cfa' => (int) 8, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 4, 'dca' => (int) 5, 'din' => (int) 5, 'dzi' => (int) 12, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 25, 'fve' => (int) 5, 'gma' => (int) 9, 'ghi' => (int) 18, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 7, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 5, 'sun' => (int) 2, 'lal' => (int) 9, 'lja' => (int) 5, 'lonja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 9, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 2, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 3, 'stu' => (int) 6, 'pvu' => (int) 4, 'ptr' => (int) 8, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 3, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 1, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 5, 'sas' => (int) 5, 'shi' => (int) 6, 'smo' => (int) 6, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 3, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420150' $species_info = array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ) $local_species = 'ugi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000968', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p31690' => 'bna', 'A03p36040' => 'bna', 'A03p53730' => 'bna', 'A04p01410' => 'bna', 'A05p05420' => 'bna', 'A05p39630' => 'bna', 'A05p39640' => 'bna', 'A09p00970' => 'bna', 'A09p53060' => 'bna', 'A10p31890' => 'bna', 'Aa31LG10G15040' => 'aar', 'Aa31LG1G21090' => 'aar', 'Aa31LG1G26900' => 'aar', 'Aa31LG3G1820' => 'aar', 'Aa31LG5G1100' => 'aar', 'Aa31LG6G4740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2265' => 'aag', 'Actinidia07998' => 'ach', 'Actinidia11266' => 'ach', 'Actinidia12682' => 'ach', 'Actinidia26479' => 'ach', 'Actinidia31406' => 'ach', 'Actinidia32437' => 'ach', 'Actinidia38862' => 'ach', 'Ah.05g174230' => 'amhyb', 'Ah.05g179070' => 'amhyb', 'Ah.05g179090' => 'amhyb', 'Ah.12g059950' => 'amhyb', 'AL3G20480' => 'aly', 'AL4G44520' => 'aly', 'AL5G43110' => 'aly', 'AL6G13890' => 'aly', 'AL6G52620' => 'aly', 'AL7G30830' => 'aly', 'Aqoxy1G00899' => 'aox', 'Aqoxy5G04333' => 'aox', 'Aqoxy7G00641' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3IZ0NN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4EF6AW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W9P8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79GA3M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C43NQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFCU6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G95YVJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCHK29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LU1UG8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX91RN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGB4B1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8DA0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9H7JI' => 'arhy', 'AT3G09320' => 'ath', 'AT3G60800' => 'ath', 'AT4G00840' => 'ath', 'AT4G22750' => 'ath', 'AT5G04270' => 'ath', 'ATR0090G003' => 'atr', 'ATR0559G349' => 'atr', 'ATR0680G261' => 'atr', 'ATR0810G048' => 'atr', 'Atru.chr12.831' => 'acertr', 'Atru.chr5.303' => 'acertr', 'Atru.chr5.748' => 'acertr', 'Atru.chr8.1999' => 'acertr', 'Atru.chr9.1436' => 'acertr', 'AUR62004211' => 'cqu', 'AUR62004548' => 'cqu', 'AUR62013637' => 'cqu', 'AUR62022662' => 'cqu', 'AUR62025777' => 'cqu', 'AUR62042386' => 'cqu', 'BcaB01g02310' => 'bca', 'BcaB01g06062' => 'bca', 'BcaB02g08975' => 'bca', 'BcaB02g08980' => 'bca', 'BcaC01g04228' => 'bca', 'BcaC01g06830' => 'bca', 'BcaC02g10186' => 'bca', 'BcaC02g12214' => 'bca', 'BcaC04g24101' => 'bca', 'BcaC05g29520' => 'bca', 'BcaC05g29661' => 'bca', 'BcaC06g32130' => 'bca', 'BcaC06g32131' => 'bca', 'BcaC07g40601' => 'bca', 'BcaC07g42641' => 'bca', 'BcaNung01038' => 'bca', 'BcaNung01676' => 'bca', 'BcaNung02480' => 'bca', 'BcaNung07376' => 'bca', 'BolC3t16146H' => 'bol', 'BolC3t16637H' => 'bol', 'BolC4t22257H' => 'bol', 'BolC4t24728H' => 'bol', 'BolC5t34517H' => 'bol', 'BolC7t45703H' => 'bol', 'BolC8t51166H' => 'bol', 'BolC9t53038H' => 'bol', 'BolC9t60000H' => 'bol', 'BraA01t01345Z' => 'bra', 'BraA01t01346Z' => 'bra', 'BraA01t01348Z' => 'bra', 'BraA03t12347Z' => 'bra', 'BraA03t12775Z' => 'bra', 'BraA03t14439Z' => 'bra', 'BraA04t15860Z' => 'bra', 'BraA05t19511Z' => 'bra', 'BraA05t22746Z' => 'bra', 'BraA09t35767Z' => 'bra', 'BraA09t40732Z' => 'bra', 'BraA10t45233Z' => 'bra', 'C03p38720' => 'bna', 'C03p43680' => 'bna', 'C04p06350' => 'bna', 'C04p31800' => 'bna', 'C05p58680' => 'bna', 'C07p52110' => 'bna', 'C08p35760' => 'bna', 'C09p01050' => 'bna', 'C09p72600' => 'bna', 'CAN.G106.2' => 'can', 'CAN.G1482.1' => 'can', 'CAN.G324.12' => 'can', 'CAN.G388.20' => 'can', 'CAN.G412.7' => 'can', 'CAN.G694.32' => 'can', 'CAN.G92.12' => 'can', 'CANSAT11G2353' => 'cansat', 'CANSAT21G1398' => 'cansat', 'CANSAT56G2456' => 'cansat', 'CANSAT56G3031' => 'cansat', 'CANSAT56G4539' => 'cansat', 'CARHR083680' => 'chi', 'CARHR171190' => 'chi', 'CARHR209010' => 'chi', 'CARHR229680' => 'chi', 'CARHR249490' => 'chi', 'Carub.0003s0844' => 'cru', 'Carub.0005s2755' => 'cru', 'Carub.0006s0322' => 'cru', 'Carub.0006s3586' => 'cru', 'Carub.0007s1855' => 'cru', 'Ca_07808_v3' => 'car', 'Ca_09535_v3' => 'car', 'Ca_10548_v3' => 'car', 'Ca_19913_v3' => 'car', 'Ca_19916_v3' => 'car', 'Ca_19975_v3' => 'car', 'CBR_g22876' => 'cbr', 'CBR_g22879' => 'cbr', 'CBR_g38491' => 'cbr', 'CBR_g54185' => 'cbr', 'CBR_g54190' => 'cbr', 'Cc02_g11020' => 'ccan', 'Cc02_g23920' => 'ccan', 'Cc02_g39860' => 'ccan', 'Cc02_g39870' => 'ccan', 'Cc03_g06760' => 'ccan', 'Cc06_g02450' => 'ccan', 'Cc09_g09450' => 'ccan', 'CDE02G1959' => 'cde', 'CDE04G0600' => 'cde', 'CDE07G1996' => 'cde', 'CDE07G2078' => 'cde', 'CDE11G0611' => 'cde', 'Cfa001683' => 'cfa', 'Cfa001734' => 'cfa', 'Cfa001737' => 'cfa', 'Cfa003751' => 'cfa', 'Cfa012019' => 'cfa', 'Cfa017353' => 'cfa', 'Cfa017732' => 'cfa', 'Cfa022464' => 'cfa', 'Ciclev10012400m.g' => 'ccl', 'Ciclev10021242m.g' => 'ccl', 'Ciclev10021302m.g' => 'ccl', 'Ciclev10021463m.g' => 'ccl', 'Ciclev10032359m.g' => 'ccl', 'CiPaw.01G081000' => 'cil', 'CiPaw.01G262500' => 'cil', 'CiPaw.01G269800' => 'cil', 'CiPaw.02G168400' => 'cil', 'CiPaw.05G119500' => 'cil', 'CiPaw.11G147300' => 'cil', 'ClCG01G003630' => 'cla', 'ClCG05G000510' => 'cla', 'ClCG05G002300' => 'cla', 'ClCG08G007650' => 'cla', 'ClCG10G021250' => 'cla', 'COL.COLO4_06218' => 'col', 'COL.COLO4_12538' => 'col', 'COL.COLO4_14775' => 'col', 'COL.COLO4_23875' => 'col', 'Cpa.g.sc141.16' => 'cpa', 'Cpa.g.sc169.16' => 'cpa', 'Cpa.g.sc244.4' => 'cpa', 'Cpa.g.sc244.5' => 'cpa', 'Cpa.g.sc29.87' => 'cpa', 'Cpa.g.sc53.115' => 'cpa', 'Cre03.g207502' => 'cre', 'Cre06.g277000' => 'cre', 'Cre09.g394050' => 'cre', 'CsaV3_3G007680' => 'csa', 'CsaV3_3G009710' => 'csa', 'CsaV3_3G034790' => 'csa', 'CsaV3_5G003750' => 'csa', 'CsaV3_6G036620' => 'csa', 'CSS0002288' => 'camsi', 'CSS0011250' => 'camsi', 'CSS0021619' => 'camsi', 'CSS0046701' => 'camsi', 'DCAR_006420' => 'dca', 'DCAR_006865' => 'dca', 'DCAR_008558' => 'dca', 'DCAR_028754' => 'dca', 'DCAR_028755' => 'dca', 'Dinv31218' => 'din', 'Dinv32371' => 'din', 'Dinv34250' => 'din', 'Dinv37156' => 'din', 'Dinv43704' => 'din', 'Duzib093G1811' => 'dzi', 'Duzib106G1622' => 'dzi', 'Duzib114G0504' => 'dzi', 'Duzib128G0338' => 'dzi', 'Duzib128G1577' => 'dzi', 'Duzib133G0104' => 'dzi', 'Duzib133G1080' => 'dzi', 'Duzib138G0324' => 'dzi', 'Duzib138G0394' => 'dzi', 'Duzib205G0122' => 'dzi', 'Duzib268G1020' => 'dzi', 'Duzib268G1359' => 'dzi', 'ECA232G3929' => 'eca', 'ECA236G2210' => 'eca', 'ECA236G2287' => 'eca', 'ECA240G4568' => 'eca', 'ECA247G0894' => 'eca', 'EL10Ac1g00200' => 'bvu', 'EL10Ac1g00886' => 'bvu', 'EL10As1g23091' => 'bvu', 'EL10As1g23092' => 'bvu', 'Eucgr.A01284' => 'egr', 'Eucgr.A01285' => 'egr', 'Eucgr.D02456' => 'egr', 'Eucgr.E00018' => 'egr', 'Eucgr.E01439' => 'egr', 'Eucgr.G02859' => 'egr', 'FAN01G0168' => 'fan', 'FAN01G0453' => 'fan', 'FAN01G2761' => 'fan', 'FAN02G1239' => 'fan', 'FAN03G0645' => 'fan', 'FAN03G2707' => 'fan', 'FAN03G2978' => 'fan', 'FAN04G0227' => 'fan', 'FAN06G0091' => 'fan', 'FAN06G1418' => 'fan', 'FAN06G1512' => 'fan', 'FAN06G1986' => 'fan', 'FAN06G2905' => 'fan', 'FAN06G4325' => 'fan', 'FAN08G0033' => 'fan', 'FAN09G0642' => 'fan', 'FAN10G1763' => 'fan', 'FAN10G2026' => 'fan', 'FAN10G2513' => 'fan', 'FAN10G3402' => 'fan', 'FAN10G3564' => 'fan', 'FAN10G3987' => 'fan', 'FAN13G1490' => 'fan', 'FAN14G5857' => 'fan', 'FAN18G1188' => 'fan', 'FvH4_5g00750' => 'fve', 'FvH4_6g13410' => 'fve', 'FvH4_7g11740' => 'fve', 'FvH4_7g17410' => 'fve', 'FvH4_7g18860' => 'fve', 'Glyma.01G099100' => 'gma', 'Glyma.01G142300' => 'gma', 'Glyma.03G025500' => 'gma', 'Glyma.03G069700' => 'gma', 'Glyma.03G260000' => 'gma', 'Glyma.09G269800' => 'gma', 'Glyma.10G208700' => 'gma', 'Glyma.18G220400' => 'gma', 'Glyma.20G182000' => 'gma', 'Gohir.A01G221726' => 'ghi', 'Gohir.A07G134600' => 'ghi', 'Gohir.A07G146000' => 'ghi', 'Gohir.A08G173900' => 'ghi', 'Gohir.A09G194900' => 'ghi', 'Gohir.A10G204100' => 'ghi', 'Gohir.A11G080600' => 'ghi', 'Gohir.A11G327500' => 'ghi', 'Gohir.A12G101800' => 'ghi', 'Gohir.D01G211200' => 'ghi', 'Gohir.D07G139200' => 'ghi', 'Gohir.D07G152100' => 'ghi', 'Gohir.D08G192600' => 'ghi', 'Gohir.D09G189200' => 'ghi', 'Gohir.D10G212000' => 'ghi', 'Gohir.D11G085200' => 'ghi', 'Gohir.D11G346400' => 'ghi', 'Gohir.D12G104800' => 'ghi', 'Gorai.001G151300' => 'gra', 'Gorai.001G174100' => 'gra', 'Gorai.002G257000' => 'gra', 'Gorai.004G202600' => 'gra', 'Gorai.007G090900' => 'gra', 'Gorai.007G376700' => 'gra', 'Gorai.008G114100' => 'gra', 'Gorai.011G237900' => 'gra', 'GSVIVG01005450001' => 'vvi', 'GSVIVG01016232001' => 'vvi', 'GSVIVG01026157001' => 'vvi', 'GSVIVG01027419001' => 'vvi', 'GSVIVG01027631001' => 'vvi', 'GSVIVG01034143001' => 'vvi', 'HanXRQChr03g0093921' => 'han', 'HanXRQChr04g0120001' => 'han', 'HanXRQChr04g0122561' => 'han', 'HanXRQChr09g0246851' => 'han', 'HanXRQChr10g0293311' => 'han', 'HanXRQChr13g0425231' => 'han', 'HanXRQChr16g0532571' => 'han', 'Haze_09050' => 'cav', 'Haze_15715' => 'cav', 'Haze_15716' => 'cav', 'Haze_16803' => 'cav', 'Haze_16850' => 'cav', 'Hma1.2p1_0301F.1_g118655' => 'hma', 'Hma1.2p1_0309F.1_g120590' => 'hma', 'Hma1.2p1_0936F.1_g238900' => 'hma', 'Hma1.2p1_3552F.1_g336740' => 'hma', 'HPP92_003520' => 'vpl', 'HPP92_006628' => 'vpl', 'HPP92_006645' => 'vpl', 'HPP92_014669' => 'vpl', 'HPP92_015077' => 'vpl', 'Hund16742' => 'sun', 'Hund17022' => 'sun', 'Lalb_Chr02g0152131' => 'lal', 'Lalb_Chr05g0225371' => 'lal', 'Lalb_Chr07g0189841' => 'lal', 'Lalb_Chr07g0192961' => 'lal', 'Lalb_Chr12g0208221' => 'lal', 'Lalb_Chr13g0291211' => 'lal', 'Lalb_Chr13g0291781' => 'lal', 'Lalb_Chr18g0044651' => 'lal', 'Lalb_Chr21g0313731' => 'lal', 'Lj1g0022533' => 'lja', 'Lj2A18T50' => 'lonja', 'Lj2A92G93' => 'lonja', 'Lj3A965T73' => 'lonja', 'Lj3g0000673' => 'lja', 'Lj3g0002666' => 'lja', 'Lj4g0016985' => 'lja', 'Lj5g0003625' => 'lja', 'Lj7A529G36' => 'lonja', 'Lj9A569T49' => 'lonja', 'Lj9A604T63' => 'lonja', 'Lsat_1_v5_gn_3_132060' => 'lsa', 'Lsat_1_v5_gn_4_68941' => 'lsa', 'Lsat_1_v5_gn_5_95580' => 'lsa', 'Lsat_1_v5_gn_7_161' => 'lsa', 'Lsat_1_v5_gn_7_7041' => 'lsa', 'Lsat_1_v5_gn_9_33481' => 'lsa', 'Lsat_1_v5_gn_9_68260' => 'lsa', 'Manes.01G073100' => 'mes', 'Manes.01G266300' => 'mes', 'Manes.02G033300' => 'mes', 'Manes.05G017900' => 'mes', 'Manes.05G046100' => 'mes', 'Manes.08G080900' => 'mes', 'Manes.10G049400' => 'mes', 'Mapoly0009s0186' => 'mpo', 'Mapoly0036s0118' => 'mpo', 'Mapoly0101s0046' => 'mpo', 'MBI04_g30218_MAGBIO' => 'mbi', 'MBI04_g35564_MAGBIO' => 'mbi', 'MBI12_g34011_MAGBIO' => 'mbi', 'MBI14_g04655_MAGBIO' => 'mbi', 'MCO07G653' => 'mco', 'MCO10G173' => 'mco', 'MD01G1087100' => 'mdo', 'MD01G1104200' => 'mdo', 'MD02G1205100' => 'mdo', 'MD04G1079200' => 'mdo', 'MD04G1131400' => 'mdo', 'MD07G1121600' => 'mdo', 'MD07G1157300' => 'mdo', 'MD07G1171000' => 'mdo', 'MD12G1144500' => 'mdo', 'Medtr1g094610' => 'mtr', 'Medtr4g021795' => 'mtr', 'Medtr4g023760' => 'mtr', 'Medtr7g118050' => 'mtr', 'MELO3C005582.2' => 'cme', 'MELO3C005989.2' => 'cme', 'MELO3C006192.2' => 'cme', 'MELO3C009248.2' => 'cme', 'MELO3C019817.2' => 'cme', 'Migut.B01625' => 'egut', 'Migut.B01915' => 'egut', 'Migut.F01721' => 'egut', 'Migut.J00314' => 'egut', 'MSTRG.20742' => 'ama', 'MSTRG.8134' => 'ama', 'Nitab4.5_0000096g0010' => 'nta', 'Nitab4.5_0000202g0030' => 'nta', 'Nitab4.5_0000216g0370' => 'nta', 'Nitab4.5_0000457g0230' => 'nta', 'Nitab4.5_0001702g0170' => 'nta', 'Nitab4.5_0003607g0010' => 'nta', 'Nitab4.5_0004917g0020' => 'nta', 'Nitab4.5_0007059g0010' => 'nta', 'Nitab4.5_0007184g0010' => 'nta', 'Nitab4.5_0007346g0020' => 'nta', 'Nn1g00410' => 'nnu', 'Nn1g01252' => 'nnu', 'Nn2g11168' => 'nnu', 'Nn2g13403' => 'nnu', 'Nn2g13760' => 'nnu', 'Nn4g26380' => 'nnu', 'Oeu000806.2' => 'oeu', 'Oeu005788.1' => 'oeu', 'Oeu006900.3' => 'oeu', 'Oeu007797.1' => 'oeu', 'Oeu011932.1' => 'oeu', 'Oeu022739.1' => 'oeu', 'Oeu037918.1' => 'oeu', 'Oeu055490.2' => 'oeu', 'Os01g0844400' => 'osa', 'Os02g0819100' => 'osa', 'Os03g0804300' => 'osa', 'Os05g0458000' => 'osa', 'Os07g0467800' => 'osa', 'Os12g0602200' => 'osa', 'Peaxi162Scf00013g03444' => 'pax', 'Peaxi162Scf00094g01120' => 'pax', 'Peaxi162Scf00191g01211' => 'pax', 'Peaxi162Scf00238g01110' => 'pax', 'Peaxi162Scf00330g00719' => 'pax', 'Peaxi162Scf00627g00018' => 'pax', 'PGR031G2686' => 'pgr', 'PGR042G0809' => 'pgr', 'PGR142G0193' => 'pgr', 'PGSC0003DMG400011066' => 'stu', 'PGSC0003DMG400012041' => 'stu', 'PGSC0003DMG400013678' => 'stu', 'PGSC0003DMG400023477' => 'stu', 'PGSC0003DMG400025956' => 'stu', 'PGSC0003DMG401019151' => 'stu', 'Phvul.006G116400' => 'pvu', 'Phvul.007G097300' => 'pvu', 'Phvul.010G015000' => 'pvu', 'Phvul.010G083900' => 'pvu', 'Potri.001G117100' => 'ptr', 'Potri.002G147300' => 'ptr', 'Potri.003G115600' => 'ptr', 'Potri.006G087400' => 'ptr', 'Potri.010G226100' => 'ptr', 'Potri.014G069200' => 'ptr', 'Potri.014G104000' => 'ptr', 'Potri.016G100200' => 'ptr', 'Pp3c10_20450' => 'ppa', 'Pp3c1_42400' => 'ppa', 'Pp3c3_24390' => 'ppa', 'Pp3c3_2860' => 'ppa', 'PRCOL_00003193' => 'pco', 'Prupe.2G144500' => 'ppe', 'Prupe.2G195700' => 'ppe', 'Prupe.2G209800' => 'ppe', 'Prupe.5G080000' => 'ppe', 'Prupe.6G257900' => 'ppe', 'Psat3g001160' => 'psa', 'Psat6g181880' => 'psa', 'Psat7g233720' => 'psa', 'PSO063G7587' => 'pso', 'PSO339G2145' => 'pso', 'PSO339G3369' => 'pso', 'PSO478G2747' => 'pso', 'PSO513G0140' => 'pso', 'PSO782G1614' => 'pso', 'PSO782G4889' => 'pso', 'PSO782G5485' => 'pso', 'PSO801G0241' => 'pso', 'QL07p048854' => 'qlo', 'QL08p046745' => 'qlo', 'QL08p052606' => 'qlo', 'QL08p053414' => 'qlo', 'QL08p054868' => 'qlo', 'RcHm_v2.0_Chr1g0350251' => 'rch', 'RcHm_v2.0_Chr1g0360851' => 'rch', 'RcHm_v2.0_Chr1g0362791' => 'rch', 'RcHm_v2.0_Chr3g0466281' => 'rch', 'RcHm_v2.0_Chr7g0201481' => 'rch', 'Rhsim01G0148600' => 'rsi', 'Rhsim05G0194400' => 'rsi', 'Rhsim07G0000700' => 'rsi', 'Rhsim07G0000800' => 'rsi', 'Rhsim07G0027900' => 'rsi', 'Rhsim09G0149500' => 'rsi', 'RhsimUnG0186900' => 'rsi', 'Sabra01G0089900' => 'sbr', 'Sabra02G0114700' => 'sbr', 'Sabra02G0116300' => 'sbr', 'Sabra03G0080100' => 'sbr', 'Sabra08G0024300' => 'sbr', 'Sabra10G0174300' => 'sbr', 'Sabra14G0048900' => 'sbr', 'Sabra14G0076500' => 'sbr', 'SalBow5G2513' => 'sbo', 'Sc01g0002300' => 'sci', 'Sc01g0004450' => 'sci', 'Sc06g0001680' => 'sci', 'Sc23g0003580' => 'sci', 'Sed0000913' => 'sed', 'Sed0001655' => 'sed', 'Sed0007745' => 'sed', 'Sed0010951' => 'sed', 'Sed0017599' => 'sed', 'Sed0021405' => 'sed', 'Sed0022810' => 'sed', 'SEGI_07099' => 'sgi', 'SEGI_11931' => 'sgi', 'SEGI_13187' => 'sgi', 'SEGI_29958' => 'sgi', 'SEGI_36351' => 'sgi', 'SGA_v2.0_scaffold126G33770' => 'sas', 'SGA_v2.0_scaffold153G37003' => 'sas', 'SGA_v2.0_scaffold2G01359' => 'sas', 'SGA_v2.0_scaffold5G03064' => 'sas', 'SGA_v2.0_scaffold95G28903' => 'sas', 'SHI12701' => 'shi', 'SHI26410' => 'shi', 'SHI38997' => 'shi', 'SHI53759' => 'shi', 'SHI53886' => 'shi', 'SHI54714' => 'shi', 'SMO011G0041' => 'smo', 'SMO146G0251' => 'smo', 'SMO160G0004' => 'smo', 'SMO174G0057' => 'smo', 'SMO244G0089' => 'smo', 'SMO296G0011' => 'smo', 'Solyc01g091280.3' => 'sly', 'Solyc05g047610.3' => 'sly', 'Solyc05g047640.3' => 'sly', 'Solyc05g055630.3' => 'sly', 'Solyc10g018160.2' => 'sly', 'Solyc10g084820.2' => 'sly', 'Solyc10g086565.2' => 'sly', 'Sopen01g037030' => 'spe', 'Sopen05g027920' => 'spe', 'Sopen05g034070' => 'spe', 'Sopen10g007260' => 'spe', 'Sopen10g034260' => 'spe', 'Sopen10g035950' => 'spe', 'Sp3g07710' => 'spa', 'Sp4g27420' => 'spa', 'Sp5g02450' => 'spa', 'Sp6g01280' => 'spa', 'Sp6g38480' => 'spa', 'Sp7g20780' => 'spa', 'TAR374G1413' => 'tar', 'TAR623G1777' => 'tar', 'TAR629G2370' => 'tar', 'TAR633G1759' => 'tar', 'TAR636G3387' => 'tar', 'THA.LOC104802447' => 'tha', 'THA.LOC104813916' => 'tha', 'THA.LOC104816423' => 'tha', 'THA.LOC104817246' => 'tha', 'THA.LOC104825895' => 'tha', 'Thecc.01G335200' => 'tca', 'Thecc.01G377400' => 'tca', 'Thecc.03G262200' => 'tca', 'Thecc.05G036800' => 'tca', 'Thecc.10G080500' => 'tca', 'Thecc.10G080800' => 'tca', 'Thhalv10001560m.g' => 'esa', 'Thhalv10006120m.g' => 'esa', 'Thhalv10014375m.g' => 'esa', 'Thhalv10021264m.g' => 'esa', 'Thhalv10028856m.g' => 'esa', 'TPR.G1914' => 'tpr', 'TPR.G4757' => 'tpr', 'TPR.G5595' => 'tpr', 'TWI14G0952' => 'twi', 'TWI14G1307' => 'twi', 'TWI38G2143' => 'twi', 'TWI59G0826' => 'twi', 'TWI77G0527' => 'twi', 'TWI81G0150' => 'twi', 'unitig_21.g21018' => 'ugi', 'unitig_26.g9725' => 'ugi', 'unitig_744.g24653' => 'ugi', 'unitig_749.g13778' => 'ugi', 'unitig_899.g15035' => 'ugi', 'vmacro04296' => 'vma', 'vmacro04852' => 'vma', 'vmacro13404' => 'vma', 'vmacro20169' => 'vma', 'vmacro21014' => 'vma', 'VMungo0331G0237' => 'vmu', 'VMungo0331G0706' => 'vmu', 'VMungo0331G1361' => 'vmu', 'VMungo0331G1489' => 'vmu', 'VMungo0540G1037' => 'vmu', 'VMungo0720G2487' => 'vmu', 'VMungo0720G2721' => 'vmu', 'Zm00001eb086860' => 'zma', 'Zm00001eb104760' => 'zma', 'Zm00001eb148220' => 'zma', 'Zm00001eb259030' => 'zma', 'Zm00001eb289590' => 'zma', 'Zm00001eb420150' => 'zma' ), 'gf_id' => 'HOM05D000968', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000968' ), 'data_identifier' => 'HOM05D000968', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000968', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p31690' => 'bna', 'A03p36040' => 'bna', 'A03p53730' => 'bna', 'A04p01410' => 'bna', 'A05p05420' => 'bna', 'A05p39630' => 'bna', 'A05p39640' => 'bna', 'A09p00970' => 'bna', 'A09p53060' => 'bna', 'A10p31890' => 'bna', 'Aa31LG10G15040' => 'aar', 'Aa31LG1G21090' => 'aar', 'Aa31LG1G26900' => 'aar', 'Aa31LG3G1820' => 'aar', 'Aa31LG5G1100' => 'aar', 'Aa31LG6G4740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2265' => 'aag', 'Actinidia07998' => 'ach', 'Actinidia11266' => 'ach', 'Actinidia12682' => 'ach', 'Actinidia26479' => 'ach', 'Actinidia31406' => 'ach', 'Actinidia32437' => 'ach', 'Actinidia38862' => 'ach', 'Ah.05g174230' => 'amhyb', 'Ah.05g179070' => 'amhyb', 'Ah.05g179090' => 'amhyb', 'Ah.12g059950' => 'amhyb', 'AL3G20480' => 'aly', 'AL4G44520' => 'aly', 'AL5G43110' => 'aly', 'AL6G13890' => 'aly', 'AL6G52620' => 'aly', 'AL7G30830' => 'aly', 'Aqoxy1G00899' => 'aox', 'Aqoxy5G04333' => 'aox', 'Aqoxy7G00641' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3IZ0NN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4EF6AW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W9P8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79GA3M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C43NQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFCU6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G95YVJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCHK29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LU1UG8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX91RN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGB4B1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8DA0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9H7JI' => 'arhy', 'AT3G09320' => 'ath', 'AT3G60800' => 'ath', 'AT4G00840' => 'ath', 'AT4G22750' => 'ath', 'AT5G04270' => 'ath', 'ATR0090G003' => 'atr', 'ATR0559G349' => 'atr', 'ATR0680G261' => 'atr', 'ATR0810G048' => 'atr', 'Atru.chr12.831' => 'acertr', 'Atru.chr5.303' => 'acertr', 'Atru.chr5.748' => 'acertr', 'Atru.chr8.1999' => 'acertr', 'Atru.chr9.1436' => 'acertr', 'AUR62004211' => 'cqu', 'AUR62004548' => 'cqu', 'AUR62013637' => 'cqu', 'AUR62022662' => 'cqu', 'AUR62025777' => 'cqu', 'AUR62042386' => 'cqu', 'BcaB01g02310' => 'bca', 'BcaB01g06062' => 'bca', 'BcaB02g08975' => 'bca', 'BcaB02g08980' => 'bca', 'BcaC01g04228' => 'bca', 'BcaC01g06830' => 'bca', 'BcaC02g10186' => 'bca', 'BcaC02g12214' => 'bca', 'BcaC04g24101' => 'bca', 'BcaC05g29520' => 'bca', 'BcaC05g29661' => 'bca', 'BcaC06g32130' => 'bca', 'BcaC06g32131' => 'bca', 'BcaC07g40601' => 'bca', 'BcaC07g42641' => 'bca', 'BcaNung01038' => 'bca', 'BcaNung01676' => 'bca', 'BcaNung02480' => 'bca', 'BcaNung07376' => 'bca', 'BolC3t16146H' => 'bol', 'BolC3t16637H' => 'bol', 'BolC4t22257H' => 'bol', 'BolC4t24728H' => 'bol', 'BolC5t34517H' => 'bol', 'BolC7t45703H' => 'bol', 'BolC8t51166H' => 'bol', 'BolC9t53038H' => 'bol', 'BolC9t60000H' => 'bol', 'BraA01t01345Z' => 'bra', 'BraA01t01346Z' => 'bra', 'BraA01t01348Z' => 'bra', 'BraA03t12347Z' => 'bra', 'BraA03t12775Z' => 'bra', 'BraA03t14439Z' => 'bra', 'BraA04t15860Z' => 'bra', 'BraA05t19511Z' => 'bra', 'BraA05t22746Z' => 'bra', 'BraA09t35767Z' => 'bra', 'BraA09t40732Z' => 'bra', 'BraA10t45233Z' => 'bra', 'C03p38720' => 'bna', 'C03p43680' => 'bna', 'C04p06350' => 'bna', 'C04p31800' => 'bna', 'C05p58680' => 'bna', 'C07p52110' => 'bna', 'C08p35760' => 'bna', 'C09p01050' => 'bna', 'C09p72600' => 'bna', 'CAN.G106.2' => 'can', 'CAN.G1482.1' => 'can', 'CAN.G324.12' => 'can', 'CAN.G388.20' => 'can', 'CAN.G412.7' => 'can', 'CAN.G694.32' => 'can', 'CAN.G92.12' => 'can', 'CANSAT11G2353' => 'cansat', 'CANSAT21G1398' => 'cansat', 'CANSAT56G2456' => 'cansat', 'CANSAT56G3031' => 'cansat', 'CANSAT56G4539' => 'cansat', 'CARHR083680' => 'chi', 'CARHR171190' => 'chi', 'CARHR209010' => 'chi', 'CARHR229680' => 'chi', 'CARHR249490' => 'chi', 'Carub.0003s0844' => 'cru', 'Carub.0005s2755' => 'cru', 'Carub.0006s0322' => 'cru', 'Carub.0006s3586' => 'cru', 'Carub.0007s1855' => 'cru', 'Ca_07808_v3' => 'car', 'Ca_09535_v3' => 'car', 'Ca_10548_v3' => 'car', 'Ca_19913_v3' => 'car', 'Ca_19916_v3' => 'car', 'Ca_19975_v3' => 'car', 'CBR_g22876' => 'cbr', 'CBR_g22879' => 'cbr', 'CBR_g38491' => 'cbr', 'CBR_g54185' => 'cbr', 'CBR_g54190' => 'cbr', 'Cc02_g11020' => 'ccan', 'Cc02_g23920' => 'ccan', 'Cc02_g39860' => 'ccan', 'Cc02_g39870' => 'ccan', 'Cc03_g06760' => 'ccan', 'Cc06_g02450' => 'ccan', 'Cc09_g09450' => 'ccan', 'CDE02G1959' => 'cde', 'CDE04G0600' => 'cde', 'CDE07G1996' => 'cde', 'CDE07G2078' => 'cde', 'CDE11G0611' => 'cde', 'Cfa001683' => 'cfa', 'Cfa001734' => 'cfa', 'Cfa001737' => 'cfa', 'Cfa003751' => 'cfa', 'Cfa012019' => 'cfa', 'Cfa017353' => 'cfa', 'Cfa017732' => 'cfa', 'Cfa022464' => 'cfa', 'Ciclev10012400m.g' => 'ccl', 'Ciclev10021242m.g' => 'ccl', 'Ciclev10021302m.g' => 'ccl', 'Ciclev10021463m.g' => 'ccl', 'Ciclev10032359m.g' => 'ccl', 'CiPaw.01G081000' => 'cil', 'CiPaw.01G262500' => 'cil', 'CiPaw.01G269800' => 'cil', 'CiPaw.02G168400' => 'cil', 'CiPaw.05G119500' => 'cil', 'CiPaw.11G147300' => 'cil', 'ClCG01G003630' => 'cla', 'ClCG05G000510' => 'cla', 'ClCG05G002300' => 'cla', 'ClCG08G007650' => 'cla', 'ClCG10G021250' => 'cla', 'COL.COLO4_06218' => 'col', 'COL.COLO4_12538' => 'col', 'COL.COLO4_14775' => 'col', 'COL.COLO4_23875' => 'col', 'Cpa.g.sc141.16' => 'cpa', 'Cpa.g.sc169.16' => 'cpa', 'Cpa.g.sc244.4' => 'cpa', 'Cpa.g.sc244.5' => 'cpa', 'Cpa.g.sc29.87' => 'cpa', 'Cpa.g.sc53.115' => 'cpa', 'Cre03.g207502' => 'cre', 'Cre06.g277000' => 'cre', 'Cre09.g394050' => 'cre', 'CsaV3_3G007680' => 'csa', 'CsaV3_3G009710' => 'csa', 'CsaV3_3G034790' => 'csa', 'CsaV3_5G003750' => 'csa', 'CsaV3_6G036620' => 'csa', 'CSS0002288' => 'camsi', 'CSS0011250' => 'camsi', 'CSS0021619' => 'camsi', 'CSS0046701' => 'camsi', 'DCAR_006420' => 'dca', 'DCAR_006865' => 'dca', 'DCAR_008558' => 'dca', 'DCAR_028754' => 'dca', 'DCAR_028755' => 'dca', 'Dinv31218' => 'din', 'Dinv32371' => 'din', 'Dinv34250' => 'din', 'Dinv37156' => 'din', 'Dinv43704' => 'din', 'Duzib093G1811' => 'dzi', 'Duzib106G1622' => 'dzi', 'Duzib114G0504' => 'dzi', 'Duzib128G0338' => 'dzi', 'Duzib128G1577' => 'dzi', 'Duzib133G0104' => 'dzi', 'Duzib133G1080' => 'dzi', 'Duzib138G0324' => 'dzi', 'Duzib138G0394' => 'dzi', 'Duzib205G0122' => 'dzi', 'Duzib268G1020' => 'dzi', 'Duzib268G1359' => 'dzi', 'ECA232G3929' => 'eca', 'ECA236G2210' => 'eca', 'ECA236G2287' => 'eca', 'ECA240G4568' => 'eca', 'ECA247G0894' => 'eca', 'EL10Ac1g00200' => 'bvu', 'EL10Ac1g00886' => 'bvu', 'EL10As1g23091' => 'bvu', 'EL10As1g23092' => 'bvu', 'Eucgr.A01284' => 'egr', 'Eucgr.A01285' => 'egr', 'Eucgr.D02456' => 'egr', 'Eucgr.E00018' => 'egr', 'Eucgr.E01439' => 'egr', 'Eucgr.G02859' => 'egr', 'FAN01G0168' => 'fan', 'FAN01G0453' => 'fan', 'FAN01G2761' => 'fan', 'FAN02G1239' => 'fan', 'FAN03G0645' => 'fan', 'FAN03G2707' => 'fan', 'FAN03G2978' => 'fan', 'FAN04G0227' => 'fan', 'FAN06G0091' => 'fan', 'FAN06G1418' => 'fan', 'FAN06G1512' => 'fan', 'FAN06G1986' => 'fan', 'FAN06G2905' => 'fan', 'FAN06G4325' => 'fan', 'FAN08G0033' => 'fan', 'FAN09G0642' => 'fan', 'FAN10G1763' => 'fan', 'FAN10G2026' => 'fan', 'FAN10G2513' => 'fan', 'FAN10G3402' => 'fan', 'FAN10G3564' => 'fan', 'FAN10G3987' => 'fan', 'FAN13G1490' => 'fan', 'FAN14G5857' => 'fan', 'FAN18G1188' => 'fan', 'FvH4_5g00750' => 'fve', 'FvH4_6g13410' => 'fve', 'FvH4_7g11740' => 'fve', 'FvH4_7g17410' => 'fve', 'FvH4_7g18860' => 'fve', 'Glyma.01G099100' => 'gma', 'Glyma.01G142300' => 'gma', 'Glyma.03G025500' => 'gma', 'Glyma.03G069700' => 'gma', 'Glyma.03G260000' => 'gma', 'Glyma.09G269800' => 'gma', 'Glyma.10G208700' => 'gma', 'Glyma.18G220400' => 'gma', 'Glyma.20G182000' => 'gma', 'Gohir.A01G221726' => 'ghi', 'Gohir.A07G134600' => 'ghi', 'Gohir.A07G146000' => 'ghi', 'Gohir.A08G173900' => 'ghi', 'Gohir.A09G194900' => 'ghi', 'Gohir.A10G204100' => 'ghi', 'Gohir.A11G080600' => 'ghi', 'Gohir.A11G327500' => 'ghi', 'Gohir.A12G101800' => 'ghi', 'Gohir.D01G211200' => 'ghi', 'Gohir.D07G139200' => 'ghi', 'Gohir.D07G152100' => 'ghi', 'Gohir.D08G192600' => 'ghi', 'Gohir.D09G189200' => 'ghi', 'Gohir.D10G212000' => 'ghi', 'Gohir.D11G085200' => 'ghi', 'Gohir.D11G346400' => 'ghi', 'Gohir.D12G104800' => 'ghi', 'Gorai.001G151300' => 'gra', 'Gorai.001G174100' => 'gra', 'Gorai.002G257000' => 'gra', 'Gorai.004G202600' => 'gra', 'Gorai.007G090900' => 'gra', 'Gorai.007G376700' => 'gra', 'Gorai.008G114100' => 'gra', 'Gorai.011G237900' => 'gra', 'GSVIVG01005450001' => 'vvi', 'GSVIVG01016232001' => 'vvi', 'GSVIVG01026157001' => 'vvi', 'GSVIVG01027419001' => 'vvi', 'GSVIVG01027631001' => 'vvi', 'GSVIVG01034143001' => 'vvi', 'HanXRQChr03g0093921' => 'han', 'HanXRQChr04g0120001' => 'han', 'HanXRQChr04g0122561' => 'han', 'HanXRQChr09g0246851' => 'han', 'HanXRQChr10g0293311' => 'han', 'HanXRQChr13g0425231' => 'han', 'HanXRQChr16g0532571' => 'han', 'Haze_09050' => 'cav', 'Haze_15715' => 'cav', 'Haze_15716' => 'cav', 'Haze_16803' => 'cav', 'Haze_16850' => 'cav', 'Hma1.2p1_0301F.1_g118655' => 'hma', 'Hma1.2p1_0309F.1_g120590' => 'hma', 'Hma1.2p1_0936F.1_g238900' => 'hma', 'Hma1.2p1_3552F.1_g336740' => 'hma', 'HPP92_003520' => 'vpl', 'HPP92_006628' => 'vpl', 'HPP92_006645' => 'vpl', 'HPP92_014669' => 'vpl', 'HPP92_015077' => 'vpl', 'Hund16742' => 'sun', 'Hund17022' => 'sun', 'Lalb_Chr02g0152131' => 'lal', 'Lalb_Chr05g0225371' => 'lal', 'Lalb_Chr07g0189841' => 'lal', 'Lalb_Chr07g0192961' => 'lal', 'Lalb_Chr12g0208221' => 'lal', 'Lalb_Chr13g0291211' => 'lal', 'Lalb_Chr13g0291781' => 'lal', 'Lalb_Chr18g0044651' => 'lal', 'Lalb_Chr21g0313731' => 'lal', 'Lj1g0022533' => 'lja', 'Lj2A18T50' => 'lonja', 'Lj2A92G93' => 'lonja', 'Lj3A965T73' => 'lonja', 'Lj3g0000673' => 'lja', 'Lj3g0002666' => 'lja', 'Lj4g0016985' => 'lja', 'Lj5g0003625' => 'lja', 'Lj7A529G36' => 'lonja', 'Lj9A569T49' => 'lonja', 'Lj9A604T63' => 'lonja', 'Lsat_1_v5_gn_3_132060' => 'lsa', 'Lsat_1_v5_gn_4_68941' => 'lsa', 'Lsat_1_v5_gn_5_95580' => 'lsa', 'Lsat_1_v5_gn_7_161' => 'lsa', 'Lsat_1_v5_gn_7_7041' => 'lsa', 'Lsat_1_v5_gn_9_33481' => 'lsa', 'Lsat_1_v5_gn_9_68260' => 'lsa', 'Manes.01G073100' => 'mes', 'Manes.01G266300' => 'mes', 'Manes.02G033300' => 'mes', 'Manes.05G017900' => 'mes', 'Manes.05G046100' => 'mes', 'Manes.08G080900' => 'mes', 'Manes.10G049400' => 'mes', 'Mapoly0009s0186' => 'mpo', 'Mapoly0036s0118' => 'mpo', 'Mapoly0101s0046' => 'mpo', 'MBI04_g30218_MAGBIO' => 'mbi', 'MBI04_g35564_MAGBIO' => 'mbi', 'MBI12_g34011_MAGBIO' => 'mbi', 'MBI14_g04655_MAGBIO' => 'mbi', 'MCO07G653' => 'mco', 'MCO10G173' => 'mco', 'MD01G1087100' => 'mdo', 'MD01G1104200' => 'mdo', 'MD02G1205100' => 'mdo', 'MD04G1079200' => 'mdo', 'MD04G1131400' => 'mdo', 'MD07G1121600' => 'mdo', 'MD07G1157300' => 'mdo', 'MD07G1171000' => 'mdo', 'MD12G1144500' => 'mdo', 'Medtr1g094610' => 'mtr', 'Medtr4g021795' => 'mtr', 'Medtr4g023760' => 'mtr', 'Medtr7g118050' => 'mtr', 'MELO3C005582.2' => 'cme', 'MELO3C005989.2' => 'cme', 'MELO3C006192.2' => 'cme', 'MELO3C009248.2' => 'cme', 'MELO3C019817.2' => 'cme', 'Migut.B01625' => 'egut', 'Migut.B01915' => 'egut', 'Migut.F01721' => 'egut', 'Migut.J00314' => 'egut', 'MSTRG.20742' => 'ama', 'MSTRG.8134' => 'ama', 'Nitab4.5_0000096g0010' => 'nta', 'Nitab4.5_0000202g0030' => 'nta', 'Nitab4.5_0000216g0370' => 'nta', 'Nitab4.5_0000457g0230' => 'nta', 'Nitab4.5_0001702g0170' => 'nta', 'Nitab4.5_0003607g0010' => 'nta', 'Nitab4.5_0004917g0020' => 'nta', 'Nitab4.5_0007059g0010' => 'nta', 'Nitab4.5_0007184g0010' => 'nta', 'Nitab4.5_0007346g0020' => 'nta', 'Nn1g00410' => 'nnu', 'Nn1g01252' => 'nnu', 'Nn2g11168' => 'nnu', 'Nn2g13403' => 'nnu', 'Nn2g13760' => 'nnu', 'Nn4g26380' => 'nnu', 'Oeu000806.2' => 'oeu', 'Oeu005788.1' => 'oeu', 'Oeu006900.3' => 'oeu', 'Oeu007797.1' => 'oeu', 'Oeu011932.1' => 'oeu', 'Oeu022739.1' => 'oeu', 'Oeu037918.1' => 'oeu', 'Oeu055490.2' => 'oeu', 'Os01g0844400' => 'osa', 'Os02g0819100' => 'osa', 'Os03g0804300' => 'osa', 'Os05g0458000' => 'osa', 'Os07g0467800' => 'osa', 'Os12g0602200' => 'osa', 'Peaxi162Scf00013g03444' => 'pax', 'Peaxi162Scf00094g01120' => 'pax', 'Peaxi162Scf00191g01211' => 'pax', 'Peaxi162Scf00238g01110' => 'pax', 'Peaxi162Scf00330g00719' => 'pax', 'Peaxi162Scf00627g00018' => 'pax', 'PGR031G2686' => 'pgr', 'PGR042G0809' => 'pgr', 'PGR142G0193' => 'pgr', 'PGSC0003DMG400011066' => 'stu', 'PGSC0003DMG400012041' => 'stu', 'PGSC0003DMG400013678' => 'stu', 'PGSC0003DMG400023477' => 'stu', 'PGSC0003DMG400025956' => 'stu', 'PGSC0003DMG401019151' => 'stu', 'Phvul.006G116400' => 'pvu', 'Phvul.007G097300' => 'pvu', 'Phvul.010G015000' => 'pvu', 'Phvul.010G083900' => 'pvu', 'Potri.001G117100' => 'ptr', 'Potri.002G147300' => 'ptr', 'Potri.003G115600' => 'ptr', 'Potri.006G087400' => 'ptr', 'Potri.010G226100' => 'ptr', 'Potri.014G069200' => 'ptr', 'Potri.014G104000' => 'ptr', 'Potri.016G100200' => 'ptr', 'Pp3c10_20450' => 'ppa', 'Pp3c1_42400' => 'ppa', 'Pp3c3_24390' => 'ppa', 'Pp3c3_2860' => 'ppa', 'PRCOL_00003193' => 'pco', 'Prupe.2G144500' => 'ppe', 'Prupe.2G195700' => 'ppe', 'Prupe.2G209800' => 'ppe', 'Prupe.5G080000' => 'ppe', 'Prupe.6G257900' => 'ppe', 'Psat3g001160' => 'psa', 'Psat6g181880' => 'psa', 'Psat7g233720' => 'psa', 'PSO063G7587' => 'pso', 'PSO339G2145' => 'pso', 'PSO339G3369' => 'pso', 'PSO478G2747' => 'pso', 'PSO513G0140' => 'pso', 'PSO782G1614' => 'pso', 'PSO782G4889' => 'pso', 'PSO782G5485' => 'pso', 'PSO801G0241' => 'pso', 'QL07p048854' => 'qlo', 'QL08p046745' => 'qlo', 'QL08p052606' => 'qlo', 'QL08p053414' => 'qlo', 'QL08p054868' => 'qlo', 'RcHm_v2.0_Chr1g0350251' => 'rch', 'RcHm_v2.0_Chr1g0360851' => 'rch', 'RcHm_v2.0_Chr1g0362791' => 'rch', 'RcHm_v2.0_Chr3g0466281' => 'rch', 'RcHm_v2.0_Chr7g0201481' => 'rch', 'Rhsim01G0148600' => 'rsi', 'Rhsim05G0194400' => 'rsi', 'Rhsim07G0000700' => 'rsi', 'Rhsim07G0000800' => 'rsi', 'Rhsim07G0027900' => 'rsi', 'Rhsim09G0149500' => 'rsi', 'RhsimUnG0186900' => 'rsi', 'Sabra01G0089900' => 'sbr', 'Sabra02G0114700' => 'sbr', 'Sabra02G0116300' => 'sbr', 'Sabra03G0080100' => 'sbr', 'Sabra08G0024300' => 'sbr', 'Sabra10G0174300' => 'sbr', 'Sabra14G0048900' => 'sbr', 'Sabra14G0076500' => 'sbr', 'SalBow5G2513' => 'sbo', 'Sc01g0002300' => 'sci', 'Sc01g0004450' => 'sci', 'Sc06g0001680' => 'sci', 'Sc23g0003580' => 'sci', 'Sed0000913' => 'sed', 'Sed0001655' => 'sed', 'Sed0007745' => 'sed', 'Sed0010951' => 'sed', 'Sed0017599' => 'sed', 'Sed0021405' => 'sed', 'Sed0022810' => 'sed', 'SEGI_07099' => 'sgi', 'SEGI_11931' => 'sgi', 'SEGI_13187' => 'sgi', 'SEGI_29958' => 'sgi', 'SEGI_36351' => 'sgi', 'SGA_v2.0_scaffold126G33770' => 'sas', 'SGA_v2.0_scaffold153G37003' => 'sas', 'SGA_v2.0_scaffold2G01359' => 'sas', 'SGA_v2.0_scaffold5G03064' => 'sas', 'SGA_v2.0_scaffold95G28903' => 'sas', 'SHI12701' => 'shi', 'SHI26410' => 'shi', 'SHI38997' => 'shi', 'SHI53759' => 'shi', 'SHI53886' => 'shi', 'SHI54714' => 'shi', 'SMO011G0041' => 'smo', 'SMO146G0251' => 'smo', 'SMO160G0004' => 'smo', 'SMO174G0057' => 'smo', 'SMO244G0089' => 'smo', 'SMO296G0011' => 'smo', 'Solyc01g091280.3' => 'sly', 'Solyc05g047610.3' => 'sly', 'Solyc05g047640.3' => 'sly', 'Solyc05g055630.3' => 'sly', 'Solyc10g018160.2' => 'sly', 'Solyc10g084820.2' => 'sly', 'Solyc10g086565.2' => 'sly', 'Sopen01g037030' => 'spe', 'Sopen05g027920' => 'spe', 'Sopen05g034070' => 'spe', 'Sopen10g007260' => 'spe', 'Sopen10g034260' => 'spe', 'Sopen10g035950' => 'spe', 'Sp3g07710' => 'spa', 'Sp4g27420' => 'spa', 'Sp5g02450' => 'spa', 'Sp6g01280' => 'spa', 'Sp6g38480' => 'spa', 'Sp7g20780' => 'spa', 'TAR374G1413' => 'tar', 'TAR623G1777' => 'tar', 'TAR629G2370' => 'tar', 'TAR633G1759' => 'tar', 'TAR636G3387' => 'tar', 'THA.LOC104802447' => 'tha', 'THA.LOC104813916' => 'tha', 'THA.LOC104816423' => 'tha', 'THA.LOC104817246' => 'tha', 'THA.LOC104825895' => 'tha', 'Thecc.01G335200' => 'tca', 'Thecc.01G377400' => 'tca', 'Thecc.03G262200' => 'tca', 'Thecc.05G036800' => 'tca', 'Thecc.10G080500' => 'tca', 'Thecc.10G080800' => 'tca', 'Thhalv10001560m.g' => 'esa', 'Thhalv10006120m.g' => 'esa', 'Thhalv10014375m.g' => 'esa', 'Thhalv10021264m.g' => 'esa', 'Thhalv10028856m.g' => 'esa', 'TPR.G1914' => 'tpr', 'TPR.G4757' => 'tpr', 'TPR.G5595' => 'tpr', 'TWI14G0952' => 'twi', 'TWI14G1307' => 'twi', 'TWI38G2143' => 'twi', 'TWI59G0826' => 'twi', 'TWI77G0527' => 'twi', 'TWI81G0150' => 'twi', 'unitig_21.g21018' => 'ugi', 'unitig_26.g9725' => 'ugi', 'unitig_744.g24653' => 'ugi', 'unitig_749.g13778' => 'ugi', 'unitig_899.g15035' => 'ugi', 'vmacro04296' => 'vma', 'vmacro04852' => 'vma', 'vmacro13404' => 'vma', 'vmacro20169' => 'vma', 'vmacro21014' => 'vma', 'VMungo0331G0237' => 'vmu', 'VMungo0331G0706' => 'vmu', 'VMungo0331G1361' => 'vmu', 'VMungo0331G1489' => 'vmu', 'VMungo0540G1037' => 'vmu', 'VMungo0720G2487' => 'vmu', 'VMungo0720G2721' => 'vmu', 'Zm00001eb086860' => 'zma', 'Zm00001eb104760' => 'zma', 'Zm00001eb148220' => 'zma', 'Zm00001eb259030' => 'zma', 'Zm00001eb289590' => 'zma', 'Zm00001eb420150' => 'zma' ) $gf_id = 'HOM05D000968' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000968' ) $data_identifier = 'HOM05D000968' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 19, 'bol' => (int) 9, 'bra' => (int) 12, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 5, 'ccan' => (int) 7, 'cde' => (int) 5, 'cfa' => (int) 8, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 4, 'dca' => (int) 5, 'din' => (int) 5, 'dzi' => (int) 12, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 25, 'fve' => (int) 5, 'gma' => (int) 9, 'ghi' => (int) 18, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 7, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 5, 'sun' => (int) 2, 'lal' => (int) 9, 'lja' => (int) 5, 'lonja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 9, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 2, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 3, 'stu' => (int) 6, 'pvu' => (int) 4, 'ptr' => (int) 8, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 3, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 1, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 5, 'sas' => (int) 5, 'shi' => (int) 6, 'smo' => (int) 6, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 3, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420150' $species_info = array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ) $local_species = 'vma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000968', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p31690' => 'bna', 'A03p36040' => 'bna', 'A03p53730' => 'bna', 'A04p01410' => 'bna', 'A05p05420' => 'bna', 'A05p39630' => 'bna', 'A05p39640' => 'bna', 'A09p00970' => 'bna', 'A09p53060' => 'bna', 'A10p31890' => 'bna', 'Aa31LG10G15040' => 'aar', 'Aa31LG1G21090' => 'aar', 'Aa31LG1G26900' => 'aar', 'Aa31LG3G1820' => 'aar', 'Aa31LG5G1100' => 'aar', 'Aa31LG6G4740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2265' => 'aag', 'Actinidia07998' => 'ach', 'Actinidia11266' => 'ach', 'Actinidia12682' => 'ach', 'Actinidia26479' => 'ach', 'Actinidia31406' => 'ach', 'Actinidia32437' => 'ach', 'Actinidia38862' => 'ach', 'Ah.05g174230' => 'amhyb', 'Ah.05g179070' => 'amhyb', 'Ah.05g179090' => 'amhyb', 'Ah.12g059950' => 'amhyb', 'AL3G20480' => 'aly', 'AL4G44520' => 'aly', 'AL5G43110' => 'aly', 'AL6G13890' => 'aly', 'AL6G52620' => 'aly', 'AL7G30830' => 'aly', 'Aqoxy1G00899' => 'aox', 'Aqoxy5G04333' => 'aox', 'Aqoxy7G00641' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3IZ0NN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4EF6AW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W9P8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79GA3M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C43NQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFCU6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G95YVJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCHK29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LU1UG8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX91RN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGB4B1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8DA0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9H7JI' => 'arhy', 'AT3G09320' => 'ath', 'AT3G60800' => 'ath', 'AT4G00840' => 'ath', 'AT4G22750' => 'ath', 'AT5G04270' => 'ath', 'ATR0090G003' => 'atr', 'ATR0559G349' => 'atr', 'ATR0680G261' => 'atr', 'ATR0810G048' => 'atr', 'Atru.chr12.831' => 'acertr', 'Atru.chr5.303' => 'acertr', 'Atru.chr5.748' => 'acertr', 'Atru.chr8.1999' => 'acertr', 'Atru.chr9.1436' => 'acertr', 'AUR62004211' => 'cqu', 'AUR62004548' => 'cqu', 'AUR62013637' => 'cqu', 'AUR62022662' => 'cqu', 'AUR62025777' => 'cqu', 'AUR62042386' => 'cqu', 'BcaB01g02310' => 'bca', 'BcaB01g06062' => 'bca', 'BcaB02g08975' => 'bca', 'BcaB02g08980' => 'bca', 'BcaC01g04228' => 'bca', 'BcaC01g06830' => 'bca', 'BcaC02g10186' => 'bca', 'BcaC02g12214' => 'bca', 'BcaC04g24101' => 'bca', 'BcaC05g29520' => 'bca', 'BcaC05g29661' => 'bca', 'BcaC06g32130' => 'bca', 'BcaC06g32131' => 'bca', 'BcaC07g40601' => 'bca', 'BcaC07g42641' => 'bca', 'BcaNung01038' => 'bca', 'BcaNung01676' => 'bca', 'BcaNung02480' => 'bca', 'BcaNung07376' => 'bca', 'BolC3t16146H' => 'bol', 'BolC3t16637H' => 'bol', 'BolC4t22257H' => 'bol', 'BolC4t24728H' => 'bol', 'BolC5t34517H' => 'bol', 'BolC7t45703H' => 'bol', 'BolC8t51166H' => 'bol', 'BolC9t53038H' => 'bol', 'BolC9t60000H' => 'bol', 'BraA01t01345Z' => 'bra', 'BraA01t01346Z' => 'bra', 'BraA01t01348Z' => 'bra', 'BraA03t12347Z' => 'bra', 'BraA03t12775Z' => 'bra', 'BraA03t14439Z' => 'bra', 'BraA04t15860Z' => 'bra', 'BraA05t19511Z' => 'bra', 'BraA05t22746Z' => 'bra', 'BraA09t35767Z' => 'bra', 'BraA09t40732Z' => 'bra', 'BraA10t45233Z' => 'bra', 'C03p38720' => 'bna', 'C03p43680' => 'bna', 'C04p06350' => 'bna', 'C04p31800' => 'bna', 'C05p58680' => 'bna', 'C07p52110' => 'bna', 'C08p35760' => 'bna', 'C09p01050' => 'bna', 'C09p72600' => 'bna', 'CAN.G106.2' => 'can', 'CAN.G1482.1' => 'can', 'CAN.G324.12' => 'can', 'CAN.G388.20' => 'can', 'CAN.G412.7' => 'can', 'CAN.G694.32' => 'can', 'CAN.G92.12' => 'can', 'CANSAT11G2353' => 'cansat', 'CANSAT21G1398' => 'cansat', 'CANSAT56G2456' => 'cansat', 'CANSAT56G3031' => 'cansat', 'CANSAT56G4539' => 'cansat', 'CARHR083680' => 'chi', 'CARHR171190' => 'chi', 'CARHR209010' => 'chi', 'CARHR229680' => 'chi', 'CARHR249490' => 'chi', 'Carub.0003s0844' => 'cru', 'Carub.0005s2755' => 'cru', 'Carub.0006s0322' => 'cru', 'Carub.0006s3586' => 'cru', 'Carub.0007s1855' => 'cru', 'Ca_07808_v3' => 'car', 'Ca_09535_v3' => 'car', 'Ca_10548_v3' => 'car', 'Ca_19913_v3' => 'car', 'Ca_19916_v3' => 'car', 'Ca_19975_v3' => 'car', 'CBR_g22876' => 'cbr', 'CBR_g22879' => 'cbr', 'CBR_g38491' => 'cbr', 'CBR_g54185' => 'cbr', 'CBR_g54190' => 'cbr', 'Cc02_g11020' => 'ccan', 'Cc02_g23920' => 'ccan', 'Cc02_g39860' => 'ccan', 'Cc02_g39870' => 'ccan', 'Cc03_g06760' => 'ccan', 'Cc06_g02450' => 'ccan', 'Cc09_g09450' => 'ccan', 'CDE02G1959' => 'cde', 'CDE04G0600' => 'cde', 'CDE07G1996' => 'cde', 'CDE07G2078' => 'cde', 'CDE11G0611' => 'cde', 'Cfa001683' => 'cfa', 'Cfa001734' => 'cfa', 'Cfa001737' => 'cfa', 'Cfa003751' => 'cfa', 'Cfa012019' => 'cfa', 'Cfa017353' => 'cfa', 'Cfa017732' => 'cfa', 'Cfa022464' => 'cfa', 'Ciclev10012400m.g' => 'ccl', 'Ciclev10021242m.g' => 'ccl', 'Ciclev10021302m.g' => 'ccl', 'Ciclev10021463m.g' => 'ccl', 'Ciclev10032359m.g' => 'ccl', 'CiPaw.01G081000' => 'cil', 'CiPaw.01G262500' => 'cil', 'CiPaw.01G269800' => 'cil', 'CiPaw.02G168400' => 'cil', 'CiPaw.05G119500' => 'cil', 'CiPaw.11G147300' => 'cil', 'ClCG01G003630' => 'cla', 'ClCG05G000510' => 'cla', 'ClCG05G002300' => 'cla', 'ClCG08G007650' => 'cla', 'ClCG10G021250' => 'cla', 'COL.COLO4_06218' => 'col', 'COL.COLO4_12538' => 'col', 'COL.COLO4_14775' => 'col', 'COL.COLO4_23875' => 'col', 'Cpa.g.sc141.16' => 'cpa', 'Cpa.g.sc169.16' => 'cpa', 'Cpa.g.sc244.4' => 'cpa', 'Cpa.g.sc244.5' => 'cpa', 'Cpa.g.sc29.87' => 'cpa', 'Cpa.g.sc53.115' => 'cpa', 'Cre03.g207502' => 'cre', 'Cre06.g277000' => 'cre', 'Cre09.g394050' => 'cre', 'CsaV3_3G007680' => 'csa', 'CsaV3_3G009710' => 'csa', 'CsaV3_3G034790' => 'csa', 'CsaV3_5G003750' => 'csa', 'CsaV3_6G036620' => 'csa', 'CSS0002288' => 'camsi', 'CSS0011250' => 'camsi', 'CSS0021619' => 'camsi', 'CSS0046701' => 'camsi', 'DCAR_006420' => 'dca', 'DCAR_006865' => 'dca', 'DCAR_008558' => 'dca', 'DCAR_028754' => 'dca', 'DCAR_028755' => 'dca', 'Dinv31218' => 'din', 'Dinv32371' => 'din', 'Dinv34250' => 'din', 'Dinv37156' => 'din', 'Dinv43704' => 'din', 'Duzib093G1811' => 'dzi', 'Duzib106G1622' => 'dzi', 'Duzib114G0504' => 'dzi', 'Duzib128G0338' => 'dzi', 'Duzib128G1577' => 'dzi', 'Duzib133G0104' => 'dzi', 'Duzib133G1080' => 'dzi', 'Duzib138G0324' => 'dzi', 'Duzib138G0394' => 'dzi', 'Duzib205G0122' => 'dzi', 'Duzib268G1020' => 'dzi', 'Duzib268G1359' => 'dzi', 'ECA232G3929' => 'eca', 'ECA236G2210' => 'eca', 'ECA236G2287' => 'eca', 'ECA240G4568' => 'eca', 'ECA247G0894' => 'eca', 'EL10Ac1g00200' => 'bvu', 'EL10Ac1g00886' => 'bvu', 'EL10As1g23091' => 'bvu', 'EL10As1g23092' => 'bvu', 'Eucgr.A01284' => 'egr', 'Eucgr.A01285' => 'egr', 'Eucgr.D02456' => 'egr', 'Eucgr.E00018' => 'egr', 'Eucgr.E01439' => 'egr', 'Eucgr.G02859' => 'egr', 'FAN01G0168' => 'fan', 'FAN01G0453' => 'fan', 'FAN01G2761' => 'fan', 'FAN02G1239' => 'fan', 'FAN03G0645' => 'fan', 'FAN03G2707' => 'fan', 'FAN03G2978' => 'fan', 'FAN04G0227' => 'fan', 'FAN06G0091' => 'fan', 'FAN06G1418' => 'fan', 'FAN06G1512' => 'fan', 'FAN06G1986' => 'fan', 'FAN06G2905' => 'fan', 'FAN06G4325' => 'fan', 'FAN08G0033' => 'fan', 'FAN09G0642' => 'fan', 'FAN10G1763' => 'fan', 'FAN10G2026' => 'fan', 'FAN10G2513' => 'fan', 'FAN10G3402' => 'fan', 'FAN10G3564' => 'fan', 'FAN10G3987' => 'fan', 'FAN13G1490' => 'fan', 'FAN14G5857' => 'fan', 'FAN18G1188' => 'fan', 'FvH4_5g00750' => 'fve', 'FvH4_6g13410' => 'fve', 'FvH4_7g11740' => 'fve', 'FvH4_7g17410' => 'fve', 'FvH4_7g18860' => 'fve', 'Glyma.01G099100' => 'gma', 'Glyma.01G142300' => 'gma', 'Glyma.03G025500' => 'gma', 'Glyma.03G069700' => 'gma', 'Glyma.03G260000' => 'gma', 'Glyma.09G269800' => 'gma', 'Glyma.10G208700' => 'gma', 'Glyma.18G220400' => 'gma', 'Glyma.20G182000' => 'gma', 'Gohir.A01G221726' => 'ghi', 'Gohir.A07G134600' => 'ghi', 'Gohir.A07G146000' => 'ghi', 'Gohir.A08G173900' => 'ghi', 'Gohir.A09G194900' => 'ghi', 'Gohir.A10G204100' => 'ghi', 'Gohir.A11G080600' => 'ghi', 'Gohir.A11G327500' => 'ghi', 'Gohir.A12G101800' => 'ghi', 'Gohir.D01G211200' => 'ghi', 'Gohir.D07G139200' => 'ghi', 'Gohir.D07G152100' => 'ghi', 'Gohir.D08G192600' => 'ghi', 'Gohir.D09G189200' => 'ghi', 'Gohir.D10G212000' => 'ghi', 'Gohir.D11G085200' => 'ghi', 'Gohir.D11G346400' => 'ghi', 'Gohir.D12G104800' => 'ghi', 'Gorai.001G151300' => 'gra', 'Gorai.001G174100' => 'gra', 'Gorai.002G257000' => 'gra', 'Gorai.004G202600' => 'gra', 'Gorai.007G090900' => 'gra', 'Gorai.007G376700' => 'gra', 'Gorai.008G114100' => 'gra', 'Gorai.011G237900' => 'gra', 'GSVIVG01005450001' => 'vvi', 'GSVIVG01016232001' => 'vvi', 'GSVIVG01026157001' => 'vvi', 'GSVIVG01027419001' => 'vvi', 'GSVIVG01027631001' => 'vvi', 'GSVIVG01034143001' => 'vvi', 'HanXRQChr03g0093921' => 'han', 'HanXRQChr04g0120001' => 'han', 'HanXRQChr04g0122561' => 'han', 'HanXRQChr09g0246851' => 'han', 'HanXRQChr10g0293311' => 'han', 'HanXRQChr13g0425231' => 'han', 'HanXRQChr16g0532571' => 'han', 'Haze_09050' => 'cav', 'Haze_15715' => 'cav', 'Haze_15716' => 'cav', 'Haze_16803' => 'cav', 'Haze_16850' => 'cav', 'Hma1.2p1_0301F.1_g118655' => 'hma', 'Hma1.2p1_0309F.1_g120590' => 'hma', 'Hma1.2p1_0936F.1_g238900' => 'hma', 'Hma1.2p1_3552F.1_g336740' => 'hma', 'HPP92_003520' => 'vpl', 'HPP92_006628' => 'vpl', 'HPP92_006645' => 'vpl', 'HPP92_014669' => 'vpl', 'HPP92_015077' => 'vpl', 'Hund16742' => 'sun', 'Hund17022' => 'sun', 'Lalb_Chr02g0152131' => 'lal', 'Lalb_Chr05g0225371' => 'lal', 'Lalb_Chr07g0189841' => 'lal', 'Lalb_Chr07g0192961' => 'lal', 'Lalb_Chr12g0208221' => 'lal', 'Lalb_Chr13g0291211' => 'lal', 'Lalb_Chr13g0291781' => 'lal', 'Lalb_Chr18g0044651' => 'lal', 'Lalb_Chr21g0313731' => 'lal', 'Lj1g0022533' => 'lja', 'Lj2A18T50' => 'lonja', 'Lj2A92G93' => 'lonja', 'Lj3A965T73' => 'lonja', 'Lj3g0000673' => 'lja', 'Lj3g0002666' => 'lja', 'Lj4g0016985' => 'lja', 'Lj5g0003625' => 'lja', 'Lj7A529G36' => 'lonja', 'Lj9A569T49' => 'lonja', 'Lj9A604T63' => 'lonja', 'Lsat_1_v5_gn_3_132060' => 'lsa', 'Lsat_1_v5_gn_4_68941' => 'lsa', 'Lsat_1_v5_gn_5_95580' => 'lsa', 'Lsat_1_v5_gn_7_161' => 'lsa', 'Lsat_1_v5_gn_7_7041' => 'lsa', 'Lsat_1_v5_gn_9_33481' => 'lsa', 'Lsat_1_v5_gn_9_68260' => 'lsa', 'Manes.01G073100' => 'mes', 'Manes.01G266300' => 'mes', 'Manes.02G033300' => 'mes', 'Manes.05G017900' => 'mes', 'Manes.05G046100' => 'mes', 'Manes.08G080900' => 'mes', 'Manes.10G049400' => 'mes', 'Mapoly0009s0186' => 'mpo', 'Mapoly0036s0118' => 'mpo', 'Mapoly0101s0046' => 'mpo', 'MBI04_g30218_MAGBIO' => 'mbi', 'MBI04_g35564_MAGBIO' => 'mbi', 'MBI12_g34011_MAGBIO' => 'mbi', 'MBI14_g04655_MAGBIO' => 'mbi', 'MCO07G653' => 'mco', 'MCO10G173' => 'mco', 'MD01G1087100' => 'mdo', 'MD01G1104200' => 'mdo', 'MD02G1205100' => 'mdo', 'MD04G1079200' => 'mdo', 'MD04G1131400' => 'mdo', 'MD07G1121600' => 'mdo', 'MD07G1157300' => 'mdo', 'MD07G1171000' => 'mdo', 'MD12G1144500' => 'mdo', 'Medtr1g094610' => 'mtr', 'Medtr4g021795' => 'mtr', 'Medtr4g023760' => 'mtr', 'Medtr7g118050' => 'mtr', 'MELO3C005582.2' => 'cme', 'MELO3C005989.2' => 'cme', 'MELO3C006192.2' => 'cme', 'MELO3C009248.2' => 'cme', 'MELO3C019817.2' => 'cme', 'Migut.B01625' => 'egut', 'Migut.B01915' => 'egut', 'Migut.F01721' => 'egut', 'Migut.J00314' => 'egut', 'MSTRG.20742' => 'ama', 'MSTRG.8134' => 'ama', 'Nitab4.5_0000096g0010' => 'nta', 'Nitab4.5_0000202g0030' => 'nta', 'Nitab4.5_0000216g0370' => 'nta', 'Nitab4.5_0000457g0230' => 'nta', 'Nitab4.5_0001702g0170' => 'nta', 'Nitab4.5_0003607g0010' => 'nta', 'Nitab4.5_0004917g0020' => 'nta', 'Nitab4.5_0007059g0010' => 'nta', 'Nitab4.5_0007184g0010' => 'nta', 'Nitab4.5_0007346g0020' => 'nta', 'Nn1g00410' => 'nnu', 'Nn1g01252' => 'nnu', 'Nn2g11168' => 'nnu', 'Nn2g13403' => 'nnu', 'Nn2g13760' => 'nnu', 'Nn4g26380' => 'nnu', 'Oeu000806.2' => 'oeu', 'Oeu005788.1' => 'oeu', 'Oeu006900.3' => 'oeu', 'Oeu007797.1' => 'oeu', 'Oeu011932.1' => 'oeu', 'Oeu022739.1' => 'oeu', 'Oeu037918.1' => 'oeu', 'Oeu055490.2' => 'oeu', 'Os01g0844400' => 'osa', 'Os02g0819100' => 'osa', 'Os03g0804300' => 'osa', 'Os05g0458000' => 'osa', 'Os07g0467800' => 'osa', 'Os12g0602200' => 'osa', 'Peaxi162Scf00013g03444' => 'pax', 'Peaxi162Scf00094g01120' => 'pax', 'Peaxi162Scf00191g01211' => 'pax', 'Peaxi162Scf00238g01110' => 'pax', 'Peaxi162Scf00330g00719' => 'pax', 'Peaxi162Scf00627g00018' => 'pax', 'PGR031G2686' => 'pgr', 'PGR042G0809' => 'pgr', 'PGR142G0193' => 'pgr', 'PGSC0003DMG400011066' => 'stu', 'PGSC0003DMG400012041' => 'stu', 'PGSC0003DMG400013678' => 'stu', 'PGSC0003DMG400023477' => 'stu', 'PGSC0003DMG400025956' => 'stu', 'PGSC0003DMG401019151' => 'stu', 'Phvul.006G116400' => 'pvu', 'Phvul.007G097300' => 'pvu', 'Phvul.010G015000' => 'pvu', 'Phvul.010G083900' => 'pvu', 'Potri.001G117100' => 'ptr', 'Potri.002G147300' => 'ptr', 'Potri.003G115600' => 'ptr', 'Potri.006G087400' => 'ptr', 'Potri.010G226100' => 'ptr', 'Potri.014G069200' => 'ptr', 'Potri.014G104000' => 'ptr', 'Potri.016G100200' => 'ptr', 'Pp3c10_20450' => 'ppa', 'Pp3c1_42400' => 'ppa', 'Pp3c3_24390' => 'ppa', 'Pp3c3_2860' => 'ppa', 'PRCOL_00003193' => 'pco', 'Prupe.2G144500' => 'ppe', 'Prupe.2G195700' => 'ppe', 'Prupe.2G209800' => 'ppe', 'Prupe.5G080000' => 'ppe', 'Prupe.6G257900' => 'ppe', 'Psat3g001160' => 'psa', 'Psat6g181880' => 'psa', 'Psat7g233720' => 'psa', 'PSO063G7587' => 'pso', 'PSO339G2145' => 'pso', 'PSO339G3369' => 'pso', 'PSO478G2747' => 'pso', 'PSO513G0140' => 'pso', 'PSO782G1614' => 'pso', 'PSO782G4889' => 'pso', 'PSO782G5485' => 'pso', 'PSO801G0241' => 'pso', 'QL07p048854' => 'qlo', 'QL08p046745' => 'qlo', 'QL08p052606' => 'qlo', 'QL08p053414' => 'qlo', 'QL08p054868' => 'qlo', 'RcHm_v2.0_Chr1g0350251' => 'rch', 'RcHm_v2.0_Chr1g0360851' => 'rch', 'RcHm_v2.0_Chr1g0362791' => 'rch', 'RcHm_v2.0_Chr3g0466281' => 'rch', 'RcHm_v2.0_Chr7g0201481' => 'rch', 'Rhsim01G0148600' => 'rsi', 'Rhsim05G0194400' => 'rsi', 'Rhsim07G0000700' => 'rsi', 'Rhsim07G0000800' => 'rsi', 'Rhsim07G0027900' => 'rsi', 'Rhsim09G0149500' => 'rsi', 'RhsimUnG0186900' => 'rsi', 'Sabra01G0089900' => 'sbr', 'Sabra02G0114700' => 'sbr', 'Sabra02G0116300' => 'sbr', 'Sabra03G0080100' => 'sbr', 'Sabra08G0024300' => 'sbr', 'Sabra10G0174300' => 'sbr', 'Sabra14G0048900' => 'sbr', 'Sabra14G0076500' => 'sbr', 'SalBow5G2513' => 'sbo', 'Sc01g0002300' => 'sci', 'Sc01g0004450' => 'sci', 'Sc06g0001680' => 'sci', 'Sc23g0003580' => 'sci', 'Sed0000913' => 'sed', 'Sed0001655' => 'sed', 'Sed0007745' => 'sed', 'Sed0010951' => 'sed', 'Sed0017599' => 'sed', 'Sed0021405' => 'sed', 'Sed0022810' => 'sed', 'SEGI_07099' => 'sgi', 'SEGI_11931' => 'sgi', 'SEGI_13187' => 'sgi', 'SEGI_29958' => 'sgi', 'SEGI_36351' => 'sgi', 'SGA_v2.0_scaffold126G33770' => 'sas', 'SGA_v2.0_scaffold153G37003' => 'sas', 'SGA_v2.0_scaffold2G01359' => 'sas', 'SGA_v2.0_scaffold5G03064' => 'sas', 'SGA_v2.0_scaffold95G28903' => 'sas', 'SHI12701' => 'shi', 'SHI26410' => 'shi', 'SHI38997' => 'shi', 'SHI53759' => 'shi', 'SHI53886' => 'shi', 'SHI54714' => 'shi', 'SMO011G0041' => 'smo', 'SMO146G0251' => 'smo', 'SMO160G0004' => 'smo', 'SMO174G0057' => 'smo', 'SMO244G0089' => 'smo', 'SMO296G0011' => 'smo', 'Solyc01g091280.3' => 'sly', 'Solyc05g047610.3' => 'sly', 'Solyc05g047640.3' => 'sly', 'Solyc05g055630.3' => 'sly', 'Solyc10g018160.2' => 'sly', 'Solyc10g084820.2' => 'sly', 'Solyc10g086565.2' => 'sly', 'Sopen01g037030' => 'spe', 'Sopen05g027920' => 'spe', 'Sopen05g034070' => 'spe', 'Sopen10g007260' => 'spe', 'Sopen10g034260' => 'spe', 'Sopen10g035950' => 'spe', 'Sp3g07710' => 'spa', 'Sp4g27420' => 'spa', 'Sp5g02450' => 'spa', 'Sp6g01280' => 'spa', 'Sp6g38480' => 'spa', 'Sp7g20780' => 'spa', 'TAR374G1413' => 'tar', 'TAR623G1777' => 'tar', 'TAR629G2370' => 'tar', 'TAR633G1759' => 'tar', 'TAR636G3387' => 'tar', 'THA.LOC104802447' => 'tha', 'THA.LOC104813916' => 'tha', 'THA.LOC104816423' => 'tha', 'THA.LOC104817246' => 'tha', 'THA.LOC104825895' => 'tha', 'Thecc.01G335200' => 'tca', 'Thecc.01G377400' => 'tca', 'Thecc.03G262200' => 'tca', 'Thecc.05G036800' => 'tca', 'Thecc.10G080500' => 'tca', 'Thecc.10G080800' => 'tca', 'Thhalv10001560m.g' => 'esa', 'Thhalv10006120m.g' => 'esa', 'Thhalv10014375m.g' => 'esa', 'Thhalv10021264m.g' => 'esa', 'Thhalv10028856m.g' => 'esa', 'TPR.G1914' => 'tpr', 'TPR.G4757' => 'tpr', 'TPR.G5595' => 'tpr', 'TWI14G0952' => 'twi', 'TWI14G1307' => 'twi', 'TWI38G2143' => 'twi', 'TWI59G0826' => 'twi', 'TWI77G0527' => 'twi', 'TWI81G0150' => 'twi', 'unitig_21.g21018' => 'ugi', 'unitig_26.g9725' => 'ugi', 'unitig_744.g24653' => 'ugi', 'unitig_749.g13778' => 'ugi', 'unitig_899.g15035' => 'ugi', 'vmacro04296' => 'vma', 'vmacro04852' => 'vma', 'vmacro13404' => 'vma', 'vmacro20169' => 'vma', 'vmacro21014' => 'vma', 'VMungo0331G0237' => 'vmu', 'VMungo0331G0706' => 'vmu', 'VMungo0331G1361' => 'vmu', 'VMungo0331G1489' => 'vmu', 'VMungo0540G1037' => 'vmu', 'VMungo0720G2487' => 'vmu', 'VMungo0720G2721' => 'vmu', 'Zm00001eb086860' => 'zma', 'Zm00001eb104760' => 'zma', 'Zm00001eb148220' => 'zma', 'Zm00001eb259030' => 'zma', 'Zm00001eb289590' => 'zma', 'Zm00001eb420150' => 'zma' ), 'gf_id' => 'HOM05D000968', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000968' ), 'data_identifier' => 'HOM05D000968', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000968', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p31690' => 'bna', 'A03p36040' => 'bna', 'A03p53730' => 'bna', 'A04p01410' => 'bna', 'A05p05420' => 'bna', 'A05p39630' => 'bna', 'A05p39640' => 'bna', 'A09p00970' => 'bna', 'A09p53060' => 'bna', 'A10p31890' => 'bna', 'Aa31LG10G15040' => 'aar', 'Aa31LG1G21090' => 'aar', 'Aa31LG1G26900' => 'aar', 'Aa31LG3G1820' => 'aar', 'Aa31LG5G1100' => 'aar', 'Aa31LG6G4740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2265' => 'aag', 'Actinidia07998' => 'ach', 'Actinidia11266' => 'ach', 'Actinidia12682' => 'ach', 'Actinidia26479' => 'ach', 'Actinidia31406' => 'ach', 'Actinidia32437' => 'ach', 'Actinidia38862' => 'ach', 'Ah.05g174230' => 'amhyb', 'Ah.05g179070' => 'amhyb', 'Ah.05g179090' => 'amhyb', 'Ah.12g059950' => 'amhyb', 'AL3G20480' => 'aly', 'AL4G44520' => 'aly', 'AL5G43110' => 'aly', 'AL6G13890' => 'aly', 'AL6G52620' => 'aly', 'AL7G30830' => 'aly', 'Aqoxy1G00899' => 'aox', 'Aqoxy5G04333' => 'aox', 'Aqoxy7G00641' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3IZ0NN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4EF6AW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W9P8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79GA3M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C43NQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFCU6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G95YVJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCHK29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LU1UG8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX91RN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGB4B1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8DA0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9H7JI' => 'arhy', 'AT3G09320' => 'ath', 'AT3G60800' => 'ath', 'AT4G00840' => 'ath', 'AT4G22750' => 'ath', 'AT5G04270' => 'ath', 'ATR0090G003' => 'atr', 'ATR0559G349' => 'atr', 'ATR0680G261' => 'atr', 'ATR0810G048' => 'atr', 'Atru.chr12.831' => 'acertr', 'Atru.chr5.303' => 'acertr', 'Atru.chr5.748' => 'acertr', 'Atru.chr8.1999' => 'acertr', 'Atru.chr9.1436' => 'acertr', 'AUR62004211' => 'cqu', 'AUR62004548' => 'cqu', 'AUR62013637' => 'cqu', 'AUR62022662' => 'cqu', 'AUR62025777' => 'cqu', 'AUR62042386' => 'cqu', 'BcaB01g02310' => 'bca', 'BcaB01g06062' => 'bca', 'BcaB02g08975' => 'bca', 'BcaB02g08980' => 'bca', 'BcaC01g04228' => 'bca', 'BcaC01g06830' => 'bca', 'BcaC02g10186' => 'bca', 'BcaC02g12214' => 'bca', 'BcaC04g24101' => 'bca', 'BcaC05g29520' => 'bca', 'BcaC05g29661' => 'bca', 'BcaC06g32130' => 'bca', 'BcaC06g32131' => 'bca', 'BcaC07g40601' => 'bca', 'BcaC07g42641' => 'bca', 'BcaNung01038' => 'bca', 'BcaNung01676' => 'bca', 'BcaNung02480' => 'bca', 'BcaNung07376' => 'bca', 'BolC3t16146H' => 'bol', 'BolC3t16637H' => 'bol', 'BolC4t22257H' => 'bol', 'BolC4t24728H' => 'bol', 'BolC5t34517H' => 'bol', 'BolC7t45703H' => 'bol', 'BolC8t51166H' => 'bol', 'BolC9t53038H' => 'bol', 'BolC9t60000H' => 'bol', 'BraA01t01345Z' => 'bra', 'BraA01t01346Z' => 'bra', 'BraA01t01348Z' => 'bra', 'BraA03t12347Z' => 'bra', 'BraA03t12775Z' => 'bra', 'BraA03t14439Z' => 'bra', 'BraA04t15860Z' => 'bra', 'BraA05t19511Z' => 'bra', 'BraA05t22746Z' => 'bra', 'BraA09t35767Z' => 'bra', 'BraA09t40732Z' => 'bra', 'BraA10t45233Z' => 'bra', 'C03p38720' => 'bna', 'C03p43680' => 'bna', 'C04p06350' => 'bna', 'C04p31800' => 'bna', 'C05p58680' => 'bna', 'C07p52110' => 'bna', 'C08p35760' => 'bna', 'C09p01050' => 'bna', 'C09p72600' => 'bna', 'CAN.G106.2' => 'can', 'CAN.G1482.1' => 'can', 'CAN.G324.12' => 'can', 'CAN.G388.20' => 'can', 'CAN.G412.7' => 'can', 'CAN.G694.32' => 'can', 'CAN.G92.12' => 'can', 'CANSAT11G2353' => 'cansat', 'CANSAT21G1398' => 'cansat', 'CANSAT56G2456' => 'cansat', 'CANSAT56G3031' => 'cansat', 'CANSAT56G4539' => 'cansat', 'CARHR083680' => 'chi', 'CARHR171190' => 'chi', 'CARHR209010' => 'chi', 'CARHR229680' => 'chi', 'CARHR249490' => 'chi', 'Carub.0003s0844' => 'cru', 'Carub.0005s2755' => 'cru', 'Carub.0006s0322' => 'cru', 'Carub.0006s3586' => 'cru', 'Carub.0007s1855' => 'cru', 'Ca_07808_v3' => 'car', 'Ca_09535_v3' => 'car', 'Ca_10548_v3' => 'car', 'Ca_19913_v3' => 'car', 'Ca_19916_v3' => 'car', 'Ca_19975_v3' => 'car', 'CBR_g22876' => 'cbr', 'CBR_g22879' => 'cbr', 'CBR_g38491' => 'cbr', 'CBR_g54185' => 'cbr', 'CBR_g54190' => 'cbr', 'Cc02_g11020' => 'ccan', 'Cc02_g23920' => 'ccan', 'Cc02_g39860' => 'ccan', 'Cc02_g39870' => 'ccan', 'Cc03_g06760' => 'ccan', 'Cc06_g02450' => 'ccan', 'Cc09_g09450' => 'ccan', 'CDE02G1959' => 'cde', 'CDE04G0600' => 'cde', 'CDE07G1996' => 'cde', 'CDE07G2078' => 'cde', 'CDE11G0611' => 'cde', 'Cfa001683' => 'cfa', 'Cfa001734' => 'cfa', 'Cfa001737' => 'cfa', 'Cfa003751' => 'cfa', 'Cfa012019' => 'cfa', 'Cfa017353' => 'cfa', 'Cfa017732' => 'cfa', 'Cfa022464' => 'cfa', 'Ciclev10012400m.g' => 'ccl', 'Ciclev10021242m.g' => 'ccl', 'Ciclev10021302m.g' => 'ccl', 'Ciclev10021463m.g' => 'ccl', 'Ciclev10032359m.g' => 'ccl', 'CiPaw.01G081000' => 'cil', 'CiPaw.01G262500' => 'cil', 'CiPaw.01G269800' => 'cil', 'CiPaw.02G168400' => 'cil', 'CiPaw.05G119500' => 'cil', 'CiPaw.11G147300' => 'cil', 'ClCG01G003630' => 'cla', 'ClCG05G000510' => 'cla', 'ClCG05G002300' => 'cla', 'ClCG08G007650' => 'cla', 'ClCG10G021250' => 'cla', 'COL.COLO4_06218' => 'col', 'COL.COLO4_12538' => 'col', 'COL.COLO4_14775' => 'col', 'COL.COLO4_23875' => 'col', 'Cpa.g.sc141.16' => 'cpa', 'Cpa.g.sc169.16' => 'cpa', 'Cpa.g.sc244.4' => 'cpa', 'Cpa.g.sc244.5' => 'cpa', 'Cpa.g.sc29.87' => 'cpa', 'Cpa.g.sc53.115' => 'cpa', 'Cre03.g207502' => 'cre', 'Cre06.g277000' => 'cre', 'Cre09.g394050' => 'cre', 'CsaV3_3G007680' => 'csa', 'CsaV3_3G009710' => 'csa', 'CsaV3_3G034790' => 'csa', 'CsaV3_5G003750' => 'csa', 'CsaV3_6G036620' => 'csa', 'CSS0002288' => 'camsi', 'CSS0011250' => 'camsi', 'CSS0021619' => 'camsi', 'CSS0046701' => 'camsi', 'DCAR_006420' => 'dca', 'DCAR_006865' => 'dca', 'DCAR_008558' => 'dca', 'DCAR_028754' => 'dca', 'DCAR_028755' => 'dca', 'Dinv31218' => 'din', 'Dinv32371' => 'din', 'Dinv34250' => 'din', 'Dinv37156' => 'din', 'Dinv43704' => 'din', 'Duzib093G1811' => 'dzi', 'Duzib106G1622' => 'dzi', 'Duzib114G0504' => 'dzi', 'Duzib128G0338' => 'dzi', 'Duzib128G1577' => 'dzi', 'Duzib133G0104' => 'dzi', 'Duzib133G1080' => 'dzi', 'Duzib138G0324' => 'dzi', 'Duzib138G0394' => 'dzi', 'Duzib205G0122' => 'dzi', 'Duzib268G1020' => 'dzi', 'Duzib268G1359' => 'dzi', 'ECA232G3929' => 'eca', 'ECA236G2210' => 'eca', 'ECA236G2287' => 'eca', 'ECA240G4568' => 'eca', 'ECA247G0894' => 'eca', 'EL10Ac1g00200' => 'bvu', 'EL10Ac1g00886' => 'bvu', 'EL10As1g23091' => 'bvu', 'EL10As1g23092' => 'bvu', 'Eucgr.A01284' => 'egr', 'Eucgr.A01285' => 'egr', 'Eucgr.D02456' => 'egr', 'Eucgr.E00018' => 'egr', 'Eucgr.E01439' => 'egr', 'Eucgr.G02859' => 'egr', 'FAN01G0168' => 'fan', 'FAN01G0453' => 'fan', 'FAN01G2761' => 'fan', 'FAN02G1239' => 'fan', 'FAN03G0645' => 'fan', 'FAN03G2707' => 'fan', 'FAN03G2978' => 'fan', 'FAN04G0227' => 'fan', 'FAN06G0091' => 'fan', 'FAN06G1418' => 'fan', 'FAN06G1512' => 'fan', 'FAN06G1986' => 'fan', 'FAN06G2905' => 'fan', 'FAN06G4325' => 'fan', 'FAN08G0033' => 'fan', 'FAN09G0642' => 'fan', 'FAN10G1763' => 'fan', 'FAN10G2026' => 'fan', 'FAN10G2513' => 'fan', 'FAN10G3402' => 'fan', 'FAN10G3564' => 'fan', 'FAN10G3987' => 'fan', 'FAN13G1490' => 'fan', 'FAN14G5857' => 'fan', 'FAN18G1188' => 'fan', 'FvH4_5g00750' => 'fve', 'FvH4_6g13410' => 'fve', 'FvH4_7g11740' => 'fve', 'FvH4_7g17410' => 'fve', 'FvH4_7g18860' => 'fve', 'Glyma.01G099100' => 'gma', 'Glyma.01G142300' => 'gma', 'Glyma.03G025500' => 'gma', 'Glyma.03G069700' => 'gma', 'Glyma.03G260000' => 'gma', 'Glyma.09G269800' => 'gma', 'Glyma.10G208700' => 'gma', 'Glyma.18G220400' => 'gma', 'Glyma.20G182000' => 'gma', 'Gohir.A01G221726' => 'ghi', 'Gohir.A07G134600' => 'ghi', 'Gohir.A07G146000' => 'ghi', 'Gohir.A08G173900' => 'ghi', 'Gohir.A09G194900' => 'ghi', 'Gohir.A10G204100' => 'ghi', 'Gohir.A11G080600' => 'ghi', 'Gohir.A11G327500' => 'ghi', 'Gohir.A12G101800' => 'ghi', 'Gohir.D01G211200' => 'ghi', 'Gohir.D07G139200' => 'ghi', 'Gohir.D07G152100' => 'ghi', 'Gohir.D08G192600' => 'ghi', 'Gohir.D09G189200' => 'ghi', 'Gohir.D10G212000' => 'ghi', 'Gohir.D11G085200' => 'ghi', 'Gohir.D11G346400' => 'ghi', 'Gohir.D12G104800' => 'ghi', 'Gorai.001G151300' => 'gra', 'Gorai.001G174100' => 'gra', 'Gorai.002G257000' => 'gra', 'Gorai.004G202600' => 'gra', 'Gorai.007G090900' => 'gra', 'Gorai.007G376700' => 'gra', 'Gorai.008G114100' => 'gra', 'Gorai.011G237900' => 'gra', 'GSVIVG01005450001' => 'vvi', 'GSVIVG01016232001' => 'vvi', 'GSVIVG01026157001' => 'vvi', 'GSVIVG01027419001' => 'vvi', 'GSVIVG01027631001' => 'vvi', 'GSVIVG01034143001' => 'vvi', 'HanXRQChr03g0093921' => 'han', 'HanXRQChr04g0120001' => 'han', 'HanXRQChr04g0122561' => 'han', 'HanXRQChr09g0246851' => 'han', 'HanXRQChr10g0293311' => 'han', 'HanXRQChr13g0425231' => 'han', 'HanXRQChr16g0532571' => 'han', 'Haze_09050' => 'cav', 'Haze_15715' => 'cav', 'Haze_15716' => 'cav', 'Haze_16803' => 'cav', 'Haze_16850' => 'cav', 'Hma1.2p1_0301F.1_g118655' => 'hma', 'Hma1.2p1_0309F.1_g120590' => 'hma', 'Hma1.2p1_0936F.1_g238900' => 'hma', 'Hma1.2p1_3552F.1_g336740' => 'hma', 'HPP92_003520' => 'vpl', 'HPP92_006628' => 'vpl', 'HPP92_006645' => 'vpl', 'HPP92_014669' => 'vpl', 'HPP92_015077' => 'vpl', 'Hund16742' => 'sun', 'Hund17022' => 'sun', 'Lalb_Chr02g0152131' => 'lal', 'Lalb_Chr05g0225371' => 'lal', 'Lalb_Chr07g0189841' => 'lal', 'Lalb_Chr07g0192961' => 'lal', 'Lalb_Chr12g0208221' => 'lal', 'Lalb_Chr13g0291211' => 'lal', 'Lalb_Chr13g0291781' => 'lal', 'Lalb_Chr18g0044651' => 'lal', 'Lalb_Chr21g0313731' => 'lal', 'Lj1g0022533' => 'lja', 'Lj2A18T50' => 'lonja', 'Lj2A92G93' => 'lonja', 'Lj3A965T73' => 'lonja', 'Lj3g0000673' => 'lja', 'Lj3g0002666' => 'lja', 'Lj4g0016985' => 'lja', 'Lj5g0003625' => 'lja', 'Lj7A529G36' => 'lonja', 'Lj9A569T49' => 'lonja', 'Lj9A604T63' => 'lonja', 'Lsat_1_v5_gn_3_132060' => 'lsa', 'Lsat_1_v5_gn_4_68941' => 'lsa', 'Lsat_1_v5_gn_5_95580' => 'lsa', 'Lsat_1_v5_gn_7_161' => 'lsa', 'Lsat_1_v5_gn_7_7041' => 'lsa', 'Lsat_1_v5_gn_9_33481' => 'lsa', 'Lsat_1_v5_gn_9_68260' => 'lsa', 'Manes.01G073100' => 'mes', 'Manes.01G266300' => 'mes', 'Manes.02G033300' => 'mes', 'Manes.05G017900' => 'mes', 'Manes.05G046100' => 'mes', 'Manes.08G080900' => 'mes', 'Manes.10G049400' => 'mes', 'Mapoly0009s0186' => 'mpo', 'Mapoly0036s0118' => 'mpo', 'Mapoly0101s0046' => 'mpo', 'MBI04_g30218_MAGBIO' => 'mbi', 'MBI04_g35564_MAGBIO' => 'mbi', 'MBI12_g34011_MAGBIO' => 'mbi', 'MBI14_g04655_MAGBIO' => 'mbi', 'MCO07G653' => 'mco', 'MCO10G173' => 'mco', 'MD01G1087100' => 'mdo', 'MD01G1104200' => 'mdo', 'MD02G1205100' => 'mdo', 'MD04G1079200' => 'mdo', 'MD04G1131400' => 'mdo', 'MD07G1121600' => 'mdo', 'MD07G1157300' => 'mdo', 'MD07G1171000' => 'mdo', 'MD12G1144500' => 'mdo', 'Medtr1g094610' => 'mtr', 'Medtr4g021795' => 'mtr', 'Medtr4g023760' => 'mtr', 'Medtr7g118050' => 'mtr', 'MELO3C005582.2' => 'cme', 'MELO3C005989.2' => 'cme', 'MELO3C006192.2' => 'cme', 'MELO3C009248.2' => 'cme', 'MELO3C019817.2' => 'cme', 'Migut.B01625' => 'egut', 'Migut.B01915' => 'egut', 'Migut.F01721' => 'egut', 'Migut.J00314' => 'egut', 'MSTRG.20742' => 'ama', 'MSTRG.8134' => 'ama', 'Nitab4.5_0000096g0010' => 'nta', 'Nitab4.5_0000202g0030' => 'nta', 'Nitab4.5_0000216g0370' => 'nta', 'Nitab4.5_0000457g0230' => 'nta', 'Nitab4.5_0001702g0170' => 'nta', 'Nitab4.5_0003607g0010' => 'nta', 'Nitab4.5_0004917g0020' => 'nta', 'Nitab4.5_0007059g0010' => 'nta', 'Nitab4.5_0007184g0010' => 'nta', 'Nitab4.5_0007346g0020' => 'nta', 'Nn1g00410' => 'nnu', 'Nn1g01252' => 'nnu', 'Nn2g11168' => 'nnu', 'Nn2g13403' => 'nnu', 'Nn2g13760' => 'nnu', 'Nn4g26380' => 'nnu', 'Oeu000806.2' => 'oeu', 'Oeu005788.1' => 'oeu', 'Oeu006900.3' => 'oeu', 'Oeu007797.1' => 'oeu', 'Oeu011932.1' => 'oeu', 'Oeu022739.1' => 'oeu', 'Oeu037918.1' => 'oeu', 'Oeu055490.2' => 'oeu', 'Os01g0844400' => 'osa', 'Os02g0819100' => 'osa', 'Os03g0804300' => 'osa', 'Os05g0458000' => 'osa', 'Os07g0467800' => 'osa', 'Os12g0602200' => 'osa', 'Peaxi162Scf00013g03444' => 'pax', 'Peaxi162Scf00094g01120' => 'pax', 'Peaxi162Scf00191g01211' => 'pax', 'Peaxi162Scf00238g01110' => 'pax', 'Peaxi162Scf00330g00719' => 'pax', 'Peaxi162Scf00627g00018' => 'pax', 'PGR031G2686' => 'pgr', 'PGR042G0809' => 'pgr', 'PGR142G0193' => 'pgr', 'PGSC0003DMG400011066' => 'stu', 'PGSC0003DMG400012041' => 'stu', 'PGSC0003DMG400013678' => 'stu', 'PGSC0003DMG400023477' => 'stu', 'PGSC0003DMG400025956' => 'stu', 'PGSC0003DMG401019151' => 'stu', 'Phvul.006G116400' => 'pvu', 'Phvul.007G097300' => 'pvu', 'Phvul.010G015000' => 'pvu', 'Phvul.010G083900' => 'pvu', 'Potri.001G117100' => 'ptr', 'Potri.002G147300' => 'ptr', 'Potri.003G115600' => 'ptr', 'Potri.006G087400' => 'ptr', 'Potri.010G226100' => 'ptr', 'Potri.014G069200' => 'ptr', 'Potri.014G104000' => 'ptr', 'Potri.016G100200' => 'ptr', 'Pp3c10_20450' => 'ppa', 'Pp3c1_42400' => 'ppa', 'Pp3c3_24390' => 'ppa', 'Pp3c3_2860' => 'ppa', 'PRCOL_00003193' => 'pco', 'Prupe.2G144500' => 'ppe', 'Prupe.2G195700' => 'ppe', 'Prupe.2G209800' => 'ppe', 'Prupe.5G080000' => 'ppe', 'Prupe.6G257900' => 'ppe', 'Psat3g001160' => 'psa', 'Psat6g181880' => 'psa', 'Psat7g233720' => 'psa', 'PSO063G7587' => 'pso', 'PSO339G2145' => 'pso', 'PSO339G3369' => 'pso', 'PSO478G2747' => 'pso', 'PSO513G0140' => 'pso', 'PSO782G1614' => 'pso', 'PSO782G4889' => 'pso', 'PSO782G5485' => 'pso', 'PSO801G0241' => 'pso', 'QL07p048854' => 'qlo', 'QL08p046745' => 'qlo', 'QL08p052606' => 'qlo', 'QL08p053414' => 'qlo', 'QL08p054868' => 'qlo', 'RcHm_v2.0_Chr1g0350251' => 'rch', 'RcHm_v2.0_Chr1g0360851' => 'rch', 'RcHm_v2.0_Chr1g0362791' => 'rch', 'RcHm_v2.0_Chr3g0466281' => 'rch', 'RcHm_v2.0_Chr7g0201481' => 'rch', 'Rhsim01G0148600' => 'rsi', 'Rhsim05G0194400' => 'rsi', 'Rhsim07G0000700' => 'rsi', 'Rhsim07G0000800' => 'rsi', 'Rhsim07G0027900' => 'rsi', 'Rhsim09G0149500' => 'rsi', 'RhsimUnG0186900' => 'rsi', 'Sabra01G0089900' => 'sbr', 'Sabra02G0114700' => 'sbr', 'Sabra02G0116300' => 'sbr', 'Sabra03G0080100' => 'sbr', 'Sabra08G0024300' => 'sbr', 'Sabra10G0174300' => 'sbr', 'Sabra14G0048900' => 'sbr', 'Sabra14G0076500' => 'sbr', 'SalBow5G2513' => 'sbo', 'Sc01g0002300' => 'sci', 'Sc01g0004450' => 'sci', 'Sc06g0001680' => 'sci', 'Sc23g0003580' => 'sci', 'Sed0000913' => 'sed', 'Sed0001655' => 'sed', 'Sed0007745' => 'sed', 'Sed0010951' => 'sed', 'Sed0017599' => 'sed', 'Sed0021405' => 'sed', 'Sed0022810' => 'sed', 'SEGI_07099' => 'sgi', 'SEGI_11931' => 'sgi', 'SEGI_13187' => 'sgi', 'SEGI_29958' => 'sgi', 'SEGI_36351' => 'sgi', 'SGA_v2.0_scaffold126G33770' => 'sas', 'SGA_v2.0_scaffold153G37003' => 'sas', 'SGA_v2.0_scaffold2G01359' => 'sas', 'SGA_v2.0_scaffold5G03064' => 'sas', 'SGA_v2.0_scaffold95G28903' => 'sas', 'SHI12701' => 'shi', 'SHI26410' => 'shi', 'SHI38997' => 'shi', 'SHI53759' => 'shi', 'SHI53886' => 'shi', 'SHI54714' => 'shi', 'SMO011G0041' => 'smo', 'SMO146G0251' => 'smo', 'SMO160G0004' => 'smo', 'SMO174G0057' => 'smo', 'SMO244G0089' => 'smo', 'SMO296G0011' => 'smo', 'Solyc01g091280.3' => 'sly', 'Solyc05g047610.3' => 'sly', 'Solyc05g047640.3' => 'sly', 'Solyc05g055630.3' => 'sly', 'Solyc10g018160.2' => 'sly', 'Solyc10g084820.2' => 'sly', 'Solyc10g086565.2' => 'sly', 'Sopen01g037030' => 'spe', 'Sopen05g027920' => 'spe', 'Sopen05g034070' => 'spe', 'Sopen10g007260' => 'spe', 'Sopen10g034260' => 'spe', 'Sopen10g035950' => 'spe', 'Sp3g07710' => 'spa', 'Sp4g27420' => 'spa', 'Sp5g02450' => 'spa', 'Sp6g01280' => 'spa', 'Sp6g38480' => 'spa', 'Sp7g20780' => 'spa', 'TAR374G1413' => 'tar', 'TAR623G1777' => 'tar', 'TAR629G2370' => 'tar', 'TAR633G1759' => 'tar', 'TAR636G3387' => 'tar', 'THA.LOC104802447' => 'tha', 'THA.LOC104813916' => 'tha', 'THA.LOC104816423' => 'tha', 'THA.LOC104817246' => 'tha', 'THA.LOC104825895' => 'tha', 'Thecc.01G335200' => 'tca', 'Thecc.01G377400' => 'tca', 'Thecc.03G262200' => 'tca', 'Thecc.05G036800' => 'tca', 'Thecc.10G080500' => 'tca', 'Thecc.10G080800' => 'tca', 'Thhalv10001560m.g' => 'esa', 'Thhalv10006120m.g' => 'esa', 'Thhalv10014375m.g' => 'esa', 'Thhalv10021264m.g' => 'esa', 'Thhalv10028856m.g' => 'esa', 'TPR.G1914' => 'tpr', 'TPR.G4757' => 'tpr', 'TPR.G5595' => 'tpr', 'TWI14G0952' => 'twi', 'TWI14G1307' => 'twi', 'TWI38G2143' => 'twi', 'TWI59G0826' => 'twi', 'TWI77G0527' => 'twi', 'TWI81G0150' => 'twi', 'unitig_21.g21018' => 'ugi', 'unitig_26.g9725' => 'ugi', 'unitig_744.g24653' => 'ugi', 'unitig_749.g13778' => 'ugi', 'unitig_899.g15035' => 'ugi', 'vmacro04296' => 'vma', 'vmacro04852' => 'vma', 'vmacro13404' => 'vma', 'vmacro20169' => 'vma', 'vmacro21014' => 'vma', 'VMungo0331G0237' => 'vmu', 'VMungo0331G0706' => 'vmu', 'VMungo0331G1361' => 'vmu', 'VMungo0331G1489' => 'vmu', 'VMungo0540G1037' => 'vmu', 'VMungo0720G2487' => 'vmu', 'VMungo0720G2721' => 'vmu', 'Zm00001eb086860' => 'zma', 'Zm00001eb104760' => 'zma', 'Zm00001eb148220' => 'zma', 'Zm00001eb259030' => 'zma', 'Zm00001eb289590' => 'zma', 'Zm00001eb420150' => 'zma' ) $gf_id = 'HOM05D000968' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000968' ) $data_identifier = 'HOM05D000968' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 19, 'bol' => (int) 9, 'bra' => (int) 12, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 5, 'ccan' => (int) 7, 'cde' => (int) 5, 'cfa' => (int) 8, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 4, 'dca' => (int) 5, 'din' => (int) 5, 'dzi' => (int) 12, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 25, 'fve' => (int) 5, 'gma' => (int) 9, 'ghi' => (int) 18, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 7, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 5, 'sun' => (int) 2, 'lal' => (int) 9, 'lja' => (int) 5, 'lonja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 9, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 2, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 3, 'stu' => (int) 6, 'pvu' => (int) 4, 'ptr' => (int) 8, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 3, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 1, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 5, 'sas' => (int) 5, 'shi' => (int) 6, 'smo' => (int) 6, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 3, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420150' $species_info = array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ) $local_species = 'vma' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000968', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p31690' => 'bna', 'A03p36040' => 'bna', 'A03p53730' => 'bna', 'A04p01410' => 'bna', 'A05p05420' => 'bna', 'A05p39630' => 'bna', 'A05p39640' => 'bna', 'A09p00970' => 'bna', 'A09p53060' => 'bna', 'A10p31890' => 'bna', 'Aa31LG10G15040' => 'aar', 'Aa31LG1G21090' => 'aar', 'Aa31LG1G26900' => 'aar', 'Aa31LG3G1820' => 'aar', 'Aa31LG5G1100' => 'aar', 'Aa31LG6G4740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2265' => 'aag', 'Actinidia07998' => 'ach', 'Actinidia11266' => 'ach', 'Actinidia12682' => 'ach', 'Actinidia26479' => 'ach', 'Actinidia31406' => 'ach', 'Actinidia32437' => 'ach', 'Actinidia38862' => 'ach', 'Ah.05g174230' => 'amhyb', 'Ah.05g179070' => 'amhyb', 'Ah.05g179090' => 'amhyb', 'Ah.12g059950' => 'amhyb', 'AL3G20480' => 'aly', 'AL4G44520' => 'aly', 'AL5G43110' => 'aly', 'AL6G13890' => 'aly', 'AL6G52620' => 'aly', 'AL7G30830' => 'aly', 'Aqoxy1G00899' => 'aox', 'Aqoxy5G04333' => 'aox', 'Aqoxy7G00641' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3IZ0NN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4EF6AW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W9P8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79GA3M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C43NQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFCU6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G95YVJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCHK29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LU1UG8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX91RN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGB4B1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8DA0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9H7JI' => 'arhy', 'AT3G09320' => 'ath', 'AT3G60800' => 'ath', 'AT4G00840' => 'ath', 'AT4G22750' => 'ath', 'AT5G04270' => 'ath', 'ATR0090G003' => 'atr', 'ATR0559G349' => 'atr', 'ATR0680G261' => 'atr', 'ATR0810G048' => 'atr', 'Atru.chr12.831' => 'acertr', 'Atru.chr5.303' => 'acertr', 'Atru.chr5.748' => 'acertr', 'Atru.chr8.1999' => 'acertr', 'Atru.chr9.1436' => 'acertr', 'AUR62004211' => 'cqu', 'AUR62004548' => 'cqu', 'AUR62013637' => 'cqu', 'AUR62022662' => 'cqu', 'AUR62025777' => 'cqu', 'AUR62042386' => 'cqu', 'BcaB01g02310' => 'bca', 'BcaB01g06062' => 'bca', 'BcaB02g08975' => 'bca', 'BcaB02g08980' => 'bca', 'BcaC01g04228' => 'bca', 'BcaC01g06830' => 'bca', 'BcaC02g10186' => 'bca', 'BcaC02g12214' => 'bca', 'BcaC04g24101' => 'bca', 'BcaC05g29520' => 'bca', 'BcaC05g29661' => 'bca', 'BcaC06g32130' => 'bca', 'BcaC06g32131' => 'bca', 'BcaC07g40601' => 'bca', 'BcaC07g42641' => 'bca', 'BcaNung01038' => 'bca', 'BcaNung01676' => 'bca', 'BcaNung02480' => 'bca', 'BcaNung07376' => 'bca', 'BolC3t16146H' => 'bol', 'BolC3t16637H' => 'bol', 'BolC4t22257H' => 'bol', 'BolC4t24728H' => 'bol', 'BolC5t34517H' => 'bol', 'BolC7t45703H' => 'bol', 'BolC8t51166H' => 'bol', 'BolC9t53038H' => 'bol', 'BolC9t60000H' => 'bol', 'BraA01t01345Z' => 'bra', 'BraA01t01346Z' => 'bra', 'BraA01t01348Z' => 'bra', 'BraA03t12347Z' => 'bra', 'BraA03t12775Z' => 'bra', 'BraA03t14439Z' => 'bra', 'BraA04t15860Z' => 'bra', 'BraA05t19511Z' => 'bra', 'BraA05t22746Z' => 'bra', 'BraA09t35767Z' => 'bra', 'BraA09t40732Z' => 'bra', 'BraA10t45233Z' => 'bra', 'C03p38720' => 'bna', 'C03p43680' => 'bna', 'C04p06350' => 'bna', 'C04p31800' => 'bna', 'C05p58680' => 'bna', 'C07p52110' => 'bna', 'C08p35760' => 'bna', 'C09p01050' => 'bna', 'C09p72600' => 'bna', 'CAN.G106.2' => 'can', 'CAN.G1482.1' => 'can', 'CAN.G324.12' => 'can', 'CAN.G388.20' => 'can', 'CAN.G412.7' => 'can', 'CAN.G694.32' => 'can', 'CAN.G92.12' => 'can', 'CANSAT11G2353' => 'cansat', 'CANSAT21G1398' => 'cansat', 'CANSAT56G2456' => 'cansat', 'CANSAT56G3031' => 'cansat', 'CANSAT56G4539' => 'cansat', 'CARHR083680' => 'chi', 'CARHR171190' => 'chi', 'CARHR209010' => 'chi', 'CARHR229680' => 'chi', 'CARHR249490' => 'chi', 'Carub.0003s0844' => 'cru', 'Carub.0005s2755' => 'cru', 'Carub.0006s0322' => 'cru', 'Carub.0006s3586' => 'cru', 'Carub.0007s1855' => 'cru', 'Ca_07808_v3' => 'car', 'Ca_09535_v3' => 'car', 'Ca_10548_v3' => 'car', 'Ca_19913_v3' => 'car', 'Ca_19916_v3' => 'car', 'Ca_19975_v3' => 'car', 'CBR_g22876' => 'cbr', 'CBR_g22879' => 'cbr', 'CBR_g38491' => 'cbr', 'CBR_g54185' => 'cbr', 'CBR_g54190' => 'cbr', 'Cc02_g11020' => 'ccan', 'Cc02_g23920' => 'ccan', 'Cc02_g39860' => 'ccan', 'Cc02_g39870' => 'ccan', 'Cc03_g06760' => 'ccan', 'Cc06_g02450' => 'ccan', 'Cc09_g09450' => 'ccan', 'CDE02G1959' => 'cde', 'CDE04G0600' => 'cde', 'CDE07G1996' => 'cde', 'CDE07G2078' => 'cde', 'CDE11G0611' => 'cde', 'Cfa001683' => 'cfa', 'Cfa001734' => 'cfa', 'Cfa001737' => 'cfa', 'Cfa003751' => 'cfa', 'Cfa012019' => 'cfa', 'Cfa017353' => 'cfa', 'Cfa017732' => 'cfa', 'Cfa022464' => 'cfa', 'Ciclev10012400m.g' => 'ccl', 'Ciclev10021242m.g' => 'ccl', 'Ciclev10021302m.g' => 'ccl', 'Ciclev10021463m.g' => 'ccl', 'Ciclev10032359m.g' => 'ccl', 'CiPaw.01G081000' => 'cil', 'CiPaw.01G262500' => 'cil', 'CiPaw.01G269800' => 'cil', 'CiPaw.02G168400' => 'cil', 'CiPaw.05G119500' => 'cil', 'CiPaw.11G147300' => 'cil', 'ClCG01G003630' => 'cla', 'ClCG05G000510' => 'cla', 'ClCG05G002300' => 'cla', 'ClCG08G007650' => 'cla', 'ClCG10G021250' => 'cla', 'COL.COLO4_06218' => 'col', 'COL.COLO4_12538' => 'col', 'COL.COLO4_14775' => 'col', 'COL.COLO4_23875' => 'col', 'Cpa.g.sc141.16' => 'cpa', 'Cpa.g.sc169.16' => 'cpa', 'Cpa.g.sc244.4' => 'cpa', 'Cpa.g.sc244.5' => 'cpa', 'Cpa.g.sc29.87' => 'cpa', 'Cpa.g.sc53.115' => 'cpa', 'Cre03.g207502' => 'cre', 'Cre06.g277000' => 'cre', 'Cre09.g394050' => 'cre', 'CsaV3_3G007680' => 'csa', 'CsaV3_3G009710' => 'csa', 'CsaV3_3G034790' => 'csa', 'CsaV3_5G003750' => 'csa', 'CsaV3_6G036620' => 'csa', 'CSS0002288' => 'camsi', 'CSS0011250' => 'camsi', 'CSS0021619' => 'camsi', 'CSS0046701' => 'camsi', 'DCAR_006420' => 'dca', 'DCAR_006865' => 'dca', 'DCAR_008558' => 'dca', 'DCAR_028754' => 'dca', 'DCAR_028755' => 'dca', 'Dinv31218' => 'din', 'Dinv32371' => 'din', 'Dinv34250' => 'din', 'Dinv37156' => 'din', 'Dinv43704' => 'din', 'Duzib093G1811' => 'dzi', 'Duzib106G1622' => 'dzi', 'Duzib114G0504' => 'dzi', 'Duzib128G0338' => 'dzi', 'Duzib128G1577' => 'dzi', 'Duzib133G0104' => 'dzi', 'Duzib133G1080' => 'dzi', 'Duzib138G0324' => 'dzi', 'Duzib138G0394' => 'dzi', 'Duzib205G0122' => 'dzi', 'Duzib268G1020' => 'dzi', 'Duzib268G1359' => 'dzi', 'ECA232G3929' => 'eca', 'ECA236G2210' => 'eca', 'ECA236G2287' => 'eca', 'ECA240G4568' => 'eca', 'ECA247G0894' => 'eca', 'EL10Ac1g00200' => 'bvu', 'EL10Ac1g00886' => 'bvu', 'EL10As1g23091' => 'bvu', 'EL10As1g23092' => 'bvu', 'Eucgr.A01284' => 'egr', 'Eucgr.A01285' => 'egr', 'Eucgr.D02456' => 'egr', 'Eucgr.E00018' => 'egr', 'Eucgr.E01439' => 'egr', 'Eucgr.G02859' => 'egr', 'FAN01G0168' => 'fan', 'FAN01G0453' => 'fan', 'FAN01G2761' => 'fan', 'FAN02G1239' => 'fan', 'FAN03G0645' => 'fan', 'FAN03G2707' => 'fan', 'FAN03G2978' => 'fan', 'FAN04G0227' => 'fan', 'FAN06G0091' => 'fan', 'FAN06G1418' => 'fan', 'FAN06G1512' => 'fan', 'FAN06G1986' => 'fan', 'FAN06G2905' => 'fan', 'FAN06G4325' => 'fan', 'FAN08G0033' => 'fan', 'FAN09G0642' => 'fan', 'FAN10G1763' => 'fan', 'FAN10G2026' => 'fan', 'FAN10G2513' => 'fan', 'FAN10G3402' => 'fan', 'FAN10G3564' => 'fan', 'FAN10G3987' => 'fan', 'FAN13G1490' => 'fan', 'FAN14G5857' => 'fan', 'FAN18G1188' => 'fan', 'FvH4_5g00750' => 'fve', 'FvH4_6g13410' => 'fve', 'FvH4_7g11740' => 'fve', 'FvH4_7g17410' => 'fve', 'FvH4_7g18860' => 'fve', 'Glyma.01G099100' => 'gma', 'Glyma.01G142300' => 'gma', 'Glyma.03G025500' => 'gma', 'Glyma.03G069700' => 'gma', 'Glyma.03G260000' => 'gma', 'Glyma.09G269800' => 'gma', 'Glyma.10G208700' => 'gma', 'Glyma.18G220400' => 'gma', 'Glyma.20G182000' => 'gma', 'Gohir.A01G221726' => 'ghi', 'Gohir.A07G134600' => 'ghi', 'Gohir.A07G146000' => 'ghi', 'Gohir.A08G173900' => 'ghi', 'Gohir.A09G194900' => 'ghi', 'Gohir.A10G204100' => 'ghi', 'Gohir.A11G080600' => 'ghi', 'Gohir.A11G327500' => 'ghi', 'Gohir.A12G101800' => 'ghi', 'Gohir.D01G211200' => 'ghi', 'Gohir.D07G139200' => 'ghi', 'Gohir.D07G152100' => 'ghi', 'Gohir.D08G192600' => 'ghi', 'Gohir.D09G189200' => 'ghi', 'Gohir.D10G212000' => 'ghi', 'Gohir.D11G085200' => 'ghi', 'Gohir.D11G346400' => 'ghi', 'Gohir.D12G104800' => 'ghi', 'Gorai.001G151300' => 'gra', 'Gorai.001G174100' => 'gra', 'Gorai.002G257000' => 'gra', 'Gorai.004G202600' => 'gra', 'Gorai.007G090900' => 'gra', 'Gorai.007G376700' => 'gra', 'Gorai.008G114100' => 'gra', 'Gorai.011G237900' => 'gra', 'GSVIVG01005450001' => 'vvi', 'GSVIVG01016232001' => 'vvi', 'GSVIVG01026157001' => 'vvi', 'GSVIVG01027419001' => 'vvi', 'GSVIVG01027631001' => 'vvi', 'GSVIVG01034143001' => 'vvi', 'HanXRQChr03g0093921' => 'han', 'HanXRQChr04g0120001' => 'han', 'HanXRQChr04g0122561' => 'han', 'HanXRQChr09g0246851' => 'han', 'HanXRQChr10g0293311' => 'han', 'HanXRQChr13g0425231' => 'han', 'HanXRQChr16g0532571' => 'han', 'Haze_09050' => 'cav', 'Haze_15715' => 'cav', 'Haze_15716' => 'cav', 'Haze_16803' => 'cav', 'Haze_16850' => 'cav', 'Hma1.2p1_0301F.1_g118655' => 'hma', 'Hma1.2p1_0309F.1_g120590' => 'hma', 'Hma1.2p1_0936F.1_g238900' => 'hma', 'Hma1.2p1_3552F.1_g336740' => 'hma', 'HPP92_003520' => 'vpl', 'HPP92_006628' => 'vpl', 'HPP92_006645' => 'vpl', 'HPP92_014669' => 'vpl', 'HPP92_015077' => 'vpl', 'Hund16742' => 'sun', 'Hund17022' => 'sun', 'Lalb_Chr02g0152131' => 'lal', 'Lalb_Chr05g0225371' => 'lal', 'Lalb_Chr07g0189841' => 'lal', 'Lalb_Chr07g0192961' => 'lal', 'Lalb_Chr12g0208221' => 'lal', 'Lalb_Chr13g0291211' => 'lal', 'Lalb_Chr13g0291781' => 'lal', 'Lalb_Chr18g0044651' => 'lal', 'Lalb_Chr21g0313731' => 'lal', 'Lj1g0022533' => 'lja', 'Lj2A18T50' => 'lonja', 'Lj2A92G93' => 'lonja', 'Lj3A965T73' => 'lonja', 'Lj3g0000673' => 'lja', 'Lj3g0002666' => 'lja', 'Lj4g0016985' => 'lja', 'Lj5g0003625' => 'lja', 'Lj7A529G36' => 'lonja', 'Lj9A569T49' => 'lonja', 'Lj9A604T63' => 'lonja', 'Lsat_1_v5_gn_3_132060' => 'lsa', 'Lsat_1_v5_gn_4_68941' => 'lsa', 'Lsat_1_v5_gn_5_95580' => 'lsa', 'Lsat_1_v5_gn_7_161' => 'lsa', 'Lsat_1_v5_gn_7_7041' => 'lsa', 'Lsat_1_v5_gn_9_33481' => 'lsa', 'Lsat_1_v5_gn_9_68260' => 'lsa', 'Manes.01G073100' => 'mes', 'Manes.01G266300' => 'mes', 'Manes.02G033300' => 'mes', 'Manes.05G017900' => 'mes', 'Manes.05G046100' => 'mes', 'Manes.08G080900' => 'mes', 'Manes.10G049400' => 'mes', 'Mapoly0009s0186' => 'mpo', 'Mapoly0036s0118' => 'mpo', 'Mapoly0101s0046' => 'mpo', 'MBI04_g30218_MAGBIO' => 'mbi', 'MBI04_g35564_MAGBIO' => 'mbi', 'MBI12_g34011_MAGBIO' => 'mbi', 'MBI14_g04655_MAGBIO' => 'mbi', 'MCO07G653' => 'mco', 'MCO10G173' => 'mco', 'MD01G1087100' => 'mdo', 'MD01G1104200' => 'mdo', 'MD02G1205100' => 'mdo', 'MD04G1079200' => 'mdo', 'MD04G1131400' => 'mdo', 'MD07G1121600' => 'mdo', 'MD07G1157300' => 'mdo', 'MD07G1171000' => 'mdo', 'MD12G1144500' => 'mdo', 'Medtr1g094610' => 'mtr', 'Medtr4g021795' => 'mtr', 'Medtr4g023760' => 'mtr', 'Medtr7g118050' => 'mtr', 'MELO3C005582.2' => 'cme', 'MELO3C005989.2' => 'cme', 'MELO3C006192.2' => 'cme', 'MELO3C009248.2' => 'cme', 'MELO3C019817.2' => 'cme', 'Migut.B01625' => 'egut', 'Migut.B01915' => 'egut', 'Migut.F01721' => 'egut', 'Migut.J00314' => 'egut', 'MSTRG.20742' => 'ama', 'MSTRG.8134' => 'ama', 'Nitab4.5_0000096g0010' => 'nta', 'Nitab4.5_0000202g0030' => 'nta', 'Nitab4.5_0000216g0370' => 'nta', 'Nitab4.5_0000457g0230' => 'nta', 'Nitab4.5_0001702g0170' => 'nta', 'Nitab4.5_0003607g0010' => 'nta', 'Nitab4.5_0004917g0020' => 'nta', 'Nitab4.5_0007059g0010' => 'nta', 'Nitab4.5_0007184g0010' => 'nta', 'Nitab4.5_0007346g0020' => 'nta', 'Nn1g00410' => 'nnu', 'Nn1g01252' => 'nnu', 'Nn2g11168' => 'nnu', 'Nn2g13403' => 'nnu', 'Nn2g13760' => 'nnu', 'Nn4g26380' => 'nnu', 'Oeu000806.2' => 'oeu', 'Oeu005788.1' => 'oeu', 'Oeu006900.3' => 'oeu', 'Oeu007797.1' => 'oeu', 'Oeu011932.1' => 'oeu', 'Oeu022739.1' => 'oeu', 'Oeu037918.1' => 'oeu', 'Oeu055490.2' => 'oeu', 'Os01g0844400' => 'osa', 'Os02g0819100' => 'osa', 'Os03g0804300' => 'osa', 'Os05g0458000' => 'osa', 'Os07g0467800' => 'osa', 'Os12g0602200' => 'osa', 'Peaxi162Scf00013g03444' => 'pax', 'Peaxi162Scf00094g01120' => 'pax', 'Peaxi162Scf00191g01211' => 'pax', 'Peaxi162Scf00238g01110' => 'pax', 'Peaxi162Scf00330g00719' => 'pax', 'Peaxi162Scf00627g00018' => 'pax', 'PGR031G2686' => 'pgr', 'PGR042G0809' => 'pgr', 'PGR142G0193' => 'pgr', 'PGSC0003DMG400011066' => 'stu', 'PGSC0003DMG400012041' => 'stu', 'PGSC0003DMG400013678' => 'stu', 'PGSC0003DMG400023477' => 'stu', 'PGSC0003DMG400025956' => 'stu', 'PGSC0003DMG401019151' => 'stu', 'Phvul.006G116400' => 'pvu', 'Phvul.007G097300' => 'pvu', 'Phvul.010G015000' => 'pvu', 'Phvul.010G083900' => 'pvu', 'Potri.001G117100' => 'ptr', 'Potri.002G147300' => 'ptr', 'Potri.003G115600' => 'ptr', 'Potri.006G087400' => 'ptr', 'Potri.010G226100' => 'ptr', 'Potri.014G069200' => 'ptr', 'Potri.014G104000' => 'ptr', 'Potri.016G100200' => 'ptr', 'Pp3c10_20450' => 'ppa', 'Pp3c1_42400' => 'ppa', 'Pp3c3_24390' => 'ppa', 'Pp3c3_2860' => 'ppa', 'PRCOL_00003193' => 'pco', 'Prupe.2G144500' => 'ppe', 'Prupe.2G195700' => 'ppe', 'Prupe.2G209800' => 'ppe', 'Prupe.5G080000' => 'ppe', 'Prupe.6G257900' => 'ppe', 'Psat3g001160' => 'psa', 'Psat6g181880' => 'psa', 'Psat7g233720' => 'psa', 'PSO063G7587' => 'pso', 'PSO339G2145' => 'pso', 'PSO339G3369' => 'pso', 'PSO478G2747' => 'pso', 'PSO513G0140' => 'pso', 'PSO782G1614' => 'pso', 'PSO782G4889' => 'pso', 'PSO782G5485' => 'pso', 'PSO801G0241' => 'pso', 'QL07p048854' => 'qlo', 'QL08p046745' => 'qlo', 'QL08p052606' => 'qlo', 'QL08p053414' => 'qlo', 'QL08p054868' => 'qlo', 'RcHm_v2.0_Chr1g0350251' => 'rch', 'RcHm_v2.0_Chr1g0360851' => 'rch', 'RcHm_v2.0_Chr1g0362791' => 'rch', 'RcHm_v2.0_Chr3g0466281' => 'rch', 'RcHm_v2.0_Chr7g0201481' => 'rch', 'Rhsim01G0148600' => 'rsi', 'Rhsim05G0194400' => 'rsi', 'Rhsim07G0000700' => 'rsi', 'Rhsim07G0000800' => 'rsi', 'Rhsim07G0027900' => 'rsi', 'Rhsim09G0149500' => 'rsi', 'RhsimUnG0186900' => 'rsi', 'Sabra01G0089900' => 'sbr', 'Sabra02G0114700' => 'sbr', 'Sabra02G0116300' => 'sbr', 'Sabra03G0080100' => 'sbr', 'Sabra08G0024300' => 'sbr', 'Sabra10G0174300' => 'sbr', 'Sabra14G0048900' => 'sbr', 'Sabra14G0076500' => 'sbr', 'SalBow5G2513' => 'sbo', 'Sc01g0002300' => 'sci', 'Sc01g0004450' => 'sci', 'Sc06g0001680' => 'sci', 'Sc23g0003580' => 'sci', 'Sed0000913' => 'sed', 'Sed0001655' => 'sed', 'Sed0007745' => 'sed', 'Sed0010951' => 'sed', 'Sed0017599' => 'sed', 'Sed0021405' => 'sed', 'Sed0022810' => 'sed', 'SEGI_07099' => 'sgi', 'SEGI_11931' => 'sgi', 'SEGI_13187' => 'sgi', 'SEGI_29958' => 'sgi', 'SEGI_36351' => 'sgi', 'SGA_v2.0_scaffold126G33770' => 'sas', 'SGA_v2.0_scaffold153G37003' => 'sas', 'SGA_v2.0_scaffold2G01359' => 'sas', 'SGA_v2.0_scaffold5G03064' => 'sas', 'SGA_v2.0_scaffold95G28903' => 'sas', 'SHI12701' => 'shi', 'SHI26410' => 'shi', 'SHI38997' => 'shi', 'SHI53759' => 'shi', 'SHI53886' => 'shi', 'SHI54714' => 'shi', 'SMO011G0041' => 'smo', 'SMO146G0251' => 'smo', 'SMO160G0004' => 'smo', 'SMO174G0057' => 'smo', 'SMO244G0089' => 'smo', 'SMO296G0011' => 'smo', 'Solyc01g091280.3' => 'sly', 'Solyc05g047610.3' => 'sly', 'Solyc05g047640.3' => 'sly', 'Solyc05g055630.3' => 'sly', 'Solyc10g018160.2' => 'sly', 'Solyc10g084820.2' => 'sly', 'Solyc10g086565.2' => 'sly', 'Sopen01g037030' => 'spe', 'Sopen05g027920' => 'spe', 'Sopen05g034070' => 'spe', 'Sopen10g007260' => 'spe', 'Sopen10g034260' => 'spe', 'Sopen10g035950' => 'spe', 'Sp3g07710' => 'spa', 'Sp4g27420' => 'spa', 'Sp5g02450' => 'spa', 'Sp6g01280' => 'spa', 'Sp6g38480' => 'spa', 'Sp7g20780' => 'spa', 'TAR374G1413' => 'tar', 'TAR623G1777' => 'tar', 'TAR629G2370' => 'tar', 'TAR633G1759' => 'tar', 'TAR636G3387' => 'tar', 'THA.LOC104802447' => 'tha', 'THA.LOC104813916' => 'tha', 'THA.LOC104816423' => 'tha', 'THA.LOC104817246' => 'tha', 'THA.LOC104825895' => 'tha', 'Thecc.01G335200' => 'tca', 'Thecc.01G377400' => 'tca', 'Thecc.03G262200' => 'tca', 'Thecc.05G036800' => 'tca', 'Thecc.10G080500' => 'tca', 'Thecc.10G080800' => 'tca', 'Thhalv10001560m.g' => 'esa', 'Thhalv10006120m.g' => 'esa', 'Thhalv10014375m.g' => 'esa', 'Thhalv10021264m.g' => 'esa', 'Thhalv10028856m.g' => 'esa', 'TPR.G1914' => 'tpr', 'TPR.G4757' => 'tpr', 'TPR.G5595' => 'tpr', 'TWI14G0952' => 'twi', 'TWI14G1307' => 'twi', 'TWI38G2143' => 'twi', 'TWI59G0826' => 'twi', 'TWI77G0527' => 'twi', 'TWI81G0150' => 'twi', 'unitig_21.g21018' => 'ugi', 'unitig_26.g9725' => 'ugi', 'unitig_744.g24653' => 'ugi', 'unitig_749.g13778' => 'ugi', 'unitig_899.g15035' => 'ugi', 'vmacro04296' => 'vma', 'vmacro04852' => 'vma', 'vmacro13404' => 'vma', 'vmacro20169' => 'vma', 'vmacro21014' => 'vma', 'VMungo0331G0237' => 'vmu', 'VMungo0331G0706' => 'vmu', 'VMungo0331G1361' => 'vmu', 'VMungo0331G1489' => 'vmu', 'VMungo0540G1037' => 'vmu', 'VMungo0720G2487' => 'vmu', 'VMungo0720G2721' => 'vmu', 'Zm00001eb086860' => 'zma', 'Zm00001eb104760' => 'zma', 'Zm00001eb148220' => 'zma', 'Zm00001eb259030' => 'zma', 'Zm00001eb289590' => 'zma', 'Zm00001eb420150' => 'zma' ), 'gf_id' => 'HOM05D000968', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000968' ), 'data_identifier' => 'HOM05D000968', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000968', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p31690' => 'bna', 'A03p36040' => 'bna', 'A03p53730' => 'bna', 'A04p01410' => 'bna', 'A05p05420' => 'bna', 'A05p39630' => 'bna', 'A05p39640' => 'bna', 'A09p00970' => 'bna', 'A09p53060' => 'bna', 'A10p31890' => 'bna', 'Aa31LG10G15040' => 'aar', 'Aa31LG1G21090' => 'aar', 'Aa31LG1G26900' => 'aar', 'Aa31LG3G1820' => 'aar', 'Aa31LG5G1100' => 'aar', 'Aa31LG6G4740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2265' => 'aag', 'Actinidia07998' => 'ach', 'Actinidia11266' => 'ach', 'Actinidia12682' => 'ach', 'Actinidia26479' => 'ach', 'Actinidia31406' => 'ach', 'Actinidia32437' => 'ach', 'Actinidia38862' => 'ach', 'Ah.05g174230' => 'amhyb', 'Ah.05g179070' => 'amhyb', 'Ah.05g179090' => 'amhyb', 'Ah.12g059950' => 'amhyb', 'AL3G20480' => 'aly', 'AL4G44520' => 'aly', 'AL5G43110' => 'aly', 'AL6G13890' => 'aly', 'AL6G52620' => 'aly', 'AL7G30830' => 'aly', 'Aqoxy1G00899' => 'aox', 'Aqoxy5G04333' => 'aox', 'Aqoxy7G00641' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3IZ0NN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4EF6AW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W9P8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79GA3M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C43NQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFCU6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G95YVJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCHK29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LU1UG8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX91RN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGB4B1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8DA0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9H7JI' => 'arhy', 'AT3G09320' => 'ath', 'AT3G60800' => 'ath', 'AT4G00840' => 'ath', 'AT4G22750' => 'ath', 'AT5G04270' => 'ath', 'ATR0090G003' => 'atr', 'ATR0559G349' => 'atr', 'ATR0680G261' => 'atr', 'ATR0810G048' => 'atr', 'Atru.chr12.831' => 'acertr', 'Atru.chr5.303' => 'acertr', 'Atru.chr5.748' => 'acertr', 'Atru.chr8.1999' => 'acertr', 'Atru.chr9.1436' => 'acertr', 'AUR62004211' => 'cqu', 'AUR62004548' => 'cqu', 'AUR62013637' => 'cqu', 'AUR62022662' => 'cqu', 'AUR62025777' => 'cqu', 'AUR62042386' => 'cqu', 'BcaB01g02310' => 'bca', 'BcaB01g06062' => 'bca', 'BcaB02g08975' => 'bca', 'BcaB02g08980' => 'bca', 'BcaC01g04228' => 'bca', 'BcaC01g06830' => 'bca', 'BcaC02g10186' => 'bca', 'BcaC02g12214' => 'bca', 'BcaC04g24101' => 'bca', 'BcaC05g29520' => 'bca', 'BcaC05g29661' => 'bca', 'BcaC06g32130' => 'bca', 'BcaC06g32131' => 'bca', 'BcaC07g40601' => 'bca', 'BcaC07g42641' => 'bca', 'BcaNung01038' => 'bca', 'BcaNung01676' => 'bca', 'BcaNung02480' => 'bca', 'BcaNung07376' => 'bca', 'BolC3t16146H' => 'bol', 'BolC3t16637H' => 'bol', 'BolC4t22257H' => 'bol', 'BolC4t24728H' => 'bol', 'BolC5t34517H' => 'bol', 'BolC7t45703H' => 'bol', 'BolC8t51166H' => 'bol', 'BolC9t53038H' => 'bol', 'BolC9t60000H' => 'bol', 'BraA01t01345Z' => 'bra', 'BraA01t01346Z' => 'bra', 'BraA01t01348Z' => 'bra', 'BraA03t12347Z' => 'bra', 'BraA03t12775Z' => 'bra', 'BraA03t14439Z' => 'bra', 'BraA04t15860Z' => 'bra', 'BraA05t19511Z' => 'bra', 'BraA05t22746Z' => 'bra', 'BraA09t35767Z' => 'bra', 'BraA09t40732Z' => 'bra', 'BraA10t45233Z' => 'bra', 'C03p38720' => 'bna', 'C03p43680' => 'bna', 'C04p06350' => 'bna', 'C04p31800' => 'bna', 'C05p58680' => 'bna', 'C07p52110' => 'bna', 'C08p35760' => 'bna', 'C09p01050' => 'bna', 'C09p72600' => 'bna', 'CAN.G106.2' => 'can', 'CAN.G1482.1' => 'can', 'CAN.G324.12' => 'can', 'CAN.G388.20' => 'can', 'CAN.G412.7' => 'can', 'CAN.G694.32' => 'can', 'CAN.G92.12' => 'can', 'CANSAT11G2353' => 'cansat', 'CANSAT21G1398' => 'cansat', 'CANSAT56G2456' => 'cansat', 'CANSAT56G3031' => 'cansat', 'CANSAT56G4539' => 'cansat', 'CARHR083680' => 'chi', 'CARHR171190' => 'chi', 'CARHR209010' => 'chi', 'CARHR229680' => 'chi', 'CARHR249490' => 'chi', 'Carub.0003s0844' => 'cru', 'Carub.0005s2755' => 'cru', 'Carub.0006s0322' => 'cru', 'Carub.0006s3586' => 'cru', 'Carub.0007s1855' => 'cru', 'Ca_07808_v3' => 'car', 'Ca_09535_v3' => 'car', 'Ca_10548_v3' => 'car', 'Ca_19913_v3' => 'car', 'Ca_19916_v3' => 'car', 'Ca_19975_v3' => 'car', 'CBR_g22876' => 'cbr', 'CBR_g22879' => 'cbr', 'CBR_g38491' => 'cbr', 'CBR_g54185' => 'cbr', 'CBR_g54190' => 'cbr', 'Cc02_g11020' => 'ccan', 'Cc02_g23920' => 'ccan', 'Cc02_g39860' => 'ccan', 'Cc02_g39870' => 'ccan', 'Cc03_g06760' => 'ccan', 'Cc06_g02450' => 'ccan', 'Cc09_g09450' => 'ccan', 'CDE02G1959' => 'cde', 'CDE04G0600' => 'cde', 'CDE07G1996' => 'cde', 'CDE07G2078' => 'cde', 'CDE11G0611' => 'cde', 'Cfa001683' => 'cfa', 'Cfa001734' => 'cfa', 'Cfa001737' => 'cfa', 'Cfa003751' => 'cfa', 'Cfa012019' => 'cfa', 'Cfa017353' => 'cfa', 'Cfa017732' => 'cfa', 'Cfa022464' => 'cfa', 'Ciclev10012400m.g' => 'ccl', 'Ciclev10021242m.g' => 'ccl', 'Ciclev10021302m.g' => 'ccl', 'Ciclev10021463m.g' => 'ccl', 'Ciclev10032359m.g' => 'ccl', 'CiPaw.01G081000' => 'cil', 'CiPaw.01G262500' => 'cil', 'CiPaw.01G269800' => 'cil', 'CiPaw.02G168400' => 'cil', 'CiPaw.05G119500' => 'cil', 'CiPaw.11G147300' => 'cil', 'ClCG01G003630' => 'cla', 'ClCG05G000510' => 'cla', 'ClCG05G002300' => 'cla', 'ClCG08G007650' => 'cla', 'ClCG10G021250' => 'cla', 'COL.COLO4_06218' => 'col', 'COL.COLO4_12538' => 'col', 'COL.COLO4_14775' => 'col', 'COL.COLO4_23875' => 'col', 'Cpa.g.sc141.16' => 'cpa', 'Cpa.g.sc169.16' => 'cpa', 'Cpa.g.sc244.4' => 'cpa', 'Cpa.g.sc244.5' => 'cpa', 'Cpa.g.sc29.87' => 'cpa', 'Cpa.g.sc53.115' => 'cpa', 'Cre03.g207502' => 'cre', 'Cre06.g277000' => 'cre', 'Cre09.g394050' => 'cre', 'CsaV3_3G007680' => 'csa', 'CsaV3_3G009710' => 'csa', 'CsaV3_3G034790' => 'csa', 'CsaV3_5G003750' => 'csa', 'CsaV3_6G036620' => 'csa', 'CSS0002288' => 'camsi', 'CSS0011250' => 'camsi', 'CSS0021619' => 'camsi', 'CSS0046701' => 'camsi', 'DCAR_006420' => 'dca', 'DCAR_006865' => 'dca', 'DCAR_008558' => 'dca', 'DCAR_028754' => 'dca', 'DCAR_028755' => 'dca', 'Dinv31218' => 'din', 'Dinv32371' => 'din', 'Dinv34250' => 'din', 'Dinv37156' => 'din', 'Dinv43704' => 'din', 'Duzib093G1811' => 'dzi', 'Duzib106G1622' => 'dzi', 'Duzib114G0504' => 'dzi', 'Duzib128G0338' => 'dzi', 'Duzib128G1577' => 'dzi', 'Duzib133G0104' => 'dzi', 'Duzib133G1080' => 'dzi', 'Duzib138G0324' => 'dzi', 'Duzib138G0394' => 'dzi', 'Duzib205G0122' => 'dzi', 'Duzib268G1020' => 'dzi', 'Duzib268G1359' => 'dzi', 'ECA232G3929' => 'eca', 'ECA236G2210' => 'eca', 'ECA236G2287' => 'eca', 'ECA240G4568' => 'eca', 'ECA247G0894' => 'eca', 'EL10Ac1g00200' => 'bvu', 'EL10Ac1g00886' => 'bvu', 'EL10As1g23091' => 'bvu', 'EL10As1g23092' => 'bvu', 'Eucgr.A01284' => 'egr', 'Eucgr.A01285' => 'egr', 'Eucgr.D02456' => 'egr', 'Eucgr.E00018' => 'egr', 'Eucgr.E01439' => 'egr', 'Eucgr.G02859' => 'egr', 'FAN01G0168' => 'fan', 'FAN01G0453' => 'fan', 'FAN01G2761' => 'fan', 'FAN02G1239' => 'fan', 'FAN03G0645' => 'fan', 'FAN03G2707' => 'fan', 'FAN03G2978' => 'fan', 'FAN04G0227' => 'fan', 'FAN06G0091' => 'fan', 'FAN06G1418' => 'fan', 'FAN06G1512' => 'fan', 'FAN06G1986' => 'fan', 'FAN06G2905' => 'fan', 'FAN06G4325' => 'fan', 'FAN08G0033' => 'fan', 'FAN09G0642' => 'fan', 'FAN10G1763' => 'fan', 'FAN10G2026' => 'fan', 'FAN10G2513' => 'fan', 'FAN10G3402' => 'fan', 'FAN10G3564' => 'fan', 'FAN10G3987' => 'fan', 'FAN13G1490' => 'fan', 'FAN14G5857' => 'fan', 'FAN18G1188' => 'fan', 'FvH4_5g00750' => 'fve', 'FvH4_6g13410' => 'fve', 'FvH4_7g11740' => 'fve', 'FvH4_7g17410' => 'fve', 'FvH4_7g18860' => 'fve', 'Glyma.01G099100' => 'gma', 'Glyma.01G142300' => 'gma', 'Glyma.03G025500' => 'gma', 'Glyma.03G069700' => 'gma', 'Glyma.03G260000' => 'gma', 'Glyma.09G269800' => 'gma', 'Glyma.10G208700' => 'gma', 'Glyma.18G220400' => 'gma', 'Glyma.20G182000' => 'gma', 'Gohir.A01G221726' => 'ghi', 'Gohir.A07G134600' => 'ghi', 'Gohir.A07G146000' => 'ghi', 'Gohir.A08G173900' => 'ghi', 'Gohir.A09G194900' => 'ghi', 'Gohir.A10G204100' => 'ghi', 'Gohir.A11G080600' => 'ghi', 'Gohir.A11G327500' => 'ghi', 'Gohir.A12G101800' => 'ghi', 'Gohir.D01G211200' => 'ghi', 'Gohir.D07G139200' => 'ghi', 'Gohir.D07G152100' => 'ghi', 'Gohir.D08G192600' => 'ghi', 'Gohir.D09G189200' => 'ghi', 'Gohir.D10G212000' => 'ghi', 'Gohir.D11G085200' => 'ghi', 'Gohir.D11G346400' => 'ghi', 'Gohir.D12G104800' => 'ghi', 'Gorai.001G151300' => 'gra', 'Gorai.001G174100' => 'gra', 'Gorai.002G257000' => 'gra', 'Gorai.004G202600' => 'gra', 'Gorai.007G090900' => 'gra', 'Gorai.007G376700' => 'gra', 'Gorai.008G114100' => 'gra', 'Gorai.011G237900' => 'gra', 'GSVIVG01005450001' => 'vvi', 'GSVIVG01016232001' => 'vvi', 'GSVIVG01026157001' => 'vvi', 'GSVIVG01027419001' => 'vvi', 'GSVIVG01027631001' => 'vvi', 'GSVIVG01034143001' => 'vvi', 'HanXRQChr03g0093921' => 'han', 'HanXRQChr04g0120001' => 'han', 'HanXRQChr04g0122561' => 'han', 'HanXRQChr09g0246851' => 'han', 'HanXRQChr10g0293311' => 'han', 'HanXRQChr13g0425231' => 'han', 'HanXRQChr16g0532571' => 'han', 'Haze_09050' => 'cav', 'Haze_15715' => 'cav', 'Haze_15716' => 'cav', 'Haze_16803' => 'cav', 'Haze_16850' => 'cav', 'Hma1.2p1_0301F.1_g118655' => 'hma', 'Hma1.2p1_0309F.1_g120590' => 'hma', 'Hma1.2p1_0936F.1_g238900' => 'hma', 'Hma1.2p1_3552F.1_g336740' => 'hma', 'HPP92_003520' => 'vpl', 'HPP92_006628' => 'vpl', 'HPP92_006645' => 'vpl', 'HPP92_014669' => 'vpl', 'HPP92_015077' => 'vpl', 'Hund16742' => 'sun', 'Hund17022' => 'sun', 'Lalb_Chr02g0152131' => 'lal', 'Lalb_Chr05g0225371' => 'lal', 'Lalb_Chr07g0189841' => 'lal', 'Lalb_Chr07g0192961' => 'lal', 'Lalb_Chr12g0208221' => 'lal', 'Lalb_Chr13g0291211' => 'lal', 'Lalb_Chr13g0291781' => 'lal', 'Lalb_Chr18g0044651' => 'lal', 'Lalb_Chr21g0313731' => 'lal', 'Lj1g0022533' => 'lja', 'Lj2A18T50' => 'lonja', 'Lj2A92G93' => 'lonja', 'Lj3A965T73' => 'lonja', 'Lj3g0000673' => 'lja', 'Lj3g0002666' => 'lja', 'Lj4g0016985' => 'lja', 'Lj5g0003625' => 'lja', 'Lj7A529G36' => 'lonja', 'Lj9A569T49' => 'lonja', 'Lj9A604T63' => 'lonja', 'Lsat_1_v5_gn_3_132060' => 'lsa', 'Lsat_1_v5_gn_4_68941' => 'lsa', 'Lsat_1_v5_gn_5_95580' => 'lsa', 'Lsat_1_v5_gn_7_161' => 'lsa', 'Lsat_1_v5_gn_7_7041' => 'lsa', 'Lsat_1_v5_gn_9_33481' => 'lsa', 'Lsat_1_v5_gn_9_68260' => 'lsa', 'Manes.01G073100' => 'mes', 'Manes.01G266300' => 'mes', 'Manes.02G033300' => 'mes', 'Manes.05G017900' => 'mes', 'Manes.05G046100' => 'mes', 'Manes.08G080900' => 'mes', 'Manes.10G049400' => 'mes', 'Mapoly0009s0186' => 'mpo', 'Mapoly0036s0118' => 'mpo', 'Mapoly0101s0046' => 'mpo', 'MBI04_g30218_MAGBIO' => 'mbi', 'MBI04_g35564_MAGBIO' => 'mbi', 'MBI12_g34011_MAGBIO' => 'mbi', 'MBI14_g04655_MAGBIO' => 'mbi', 'MCO07G653' => 'mco', 'MCO10G173' => 'mco', 'MD01G1087100' => 'mdo', 'MD01G1104200' => 'mdo', 'MD02G1205100' => 'mdo', 'MD04G1079200' => 'mdo', 'MD04G1131400' => 'mdo', 'MD07G1121600' => 'mdo', 'MD07G1157300' => 'mdo', 'MD07G1171000' => 'mdo', 'MD12G1144500' => 'mdo', 'Medtr1g094610' => 'mtr', 'Medtr4g021795' => 'mtr', 'Medtr4g023760' => 'mtr', 'Medtr7g118050' => 'mtr', 'MELO3C005582.2' => 'cme', 'MELO3C005989.2' => 'cme', 'MELO3C006192.2' => 'cme', 'MELO3C009248.2' => 'cme', 'MELO3C019817.2' => 'cme', 'Migut.B01625' => 'egut', 'Migut.B01915' => 'egut', 'Migut.F01721' => 'egut', 'Migut.J00314' => 'egut', 'MSTRG.20742' => 'ama', 'MSTRG.8134' => 'ama', 'Nitab4.5_0000096g0010' => 'nta', 'Nitab4.5_0000202g0030' => 'nta', 'Nitab4.5_0000216g0370' => 'nta', 'Nitab4.5_0000457g0230' => 'nta', 'Nitab4.5_0001702g0170' => 'nta', 'Nitab4.5_0003607g0010' => 'nta', 'Nitab4.5_0004917g0020' => 'nta', 'Nitab4.5_0007059g0010' => 'nta', 'Nitab4.5_0007184g0010' => 'nta', 'Nitab4.5_0007346g0020' => 'nta', 'Nn1g00410' => 'nnu', 'Nn1g01252' => 'nnu', 'Nn2g11168' => 'nnu', 'Nn2g13403' => 'nnu', 'Nn2g13760' => 'nnu', 'Nn4g26380' => 'nnu', 'Oeu000806.2' => 'oeu', 'Oeu005788.1' => 'oeu', 'Oeu006900.3' => 'oeu', 'Oeu007797.1' => 'oeu', 'Oeu011932.1' => 'oeu', 'Oeu022739.1' => 'oeu', 'Oeu037918.1' => 'oeu', 'Oeu055490.2' => 'oeu', 'Os01g0844400' => 'osa', 'Os02g0819100' => 'osa', 'Os03g0804300' => 'osa', 'Os05g0458000' => 'osa', 'Os07g0467800' => 'osa', 'Os12g0602200' => 'osa', 'Peaxi162Scf00013g03444' => 'pax', 'Peaxi162Scf00094g01120' => 'pax', 'Peaxi162Scf00191g01211' => 'pax', 'Peaxi162Scf00238g01110' => 'pax', 'Peaxi162Scf00330g00719' => 'pax', 'Peaxi162Scf00627g00018' => 'pax', 'PGR031G2686' => 'pgr', 'PGR042G0809' => 'pgr', 'PGR142G0193' => 'pgr', 'PGSC0003DMG400011066' => 'stu', 'PGSC0003DMG400012041' => 'stu', 'PGSC0003DMG400013678' => 'stu', 'PGSC0003DMG400023477' => 'stu', 'PGSC0003DMG400025956' => 'stu', 'PGSC0003DMG401019151' => 'stu', 'Phvul.006G116400' => 'pvu', 'Phvul.007G097300' => 'pvu', 'Phvul.010G015000' => 'pvu', 'Phvul.010G083900' => 'pvu', 'Potri.001G117100' => 'ptr', 'Potri.002G147300' => 'ptr', 'Potri.003G115600' => 'ptr', 'Potri.006G087400' => 'ptr', 'Potri.010G226100' => 'ptr', 'Potri.014G069200' => 'ptr', 'Potri.014G104000' => 'ptr', 'Potri.016G100200' => 'ptr', 'Pp3c10_20450' => 'ppa', 'Pp3c1_42400' => 'ppa', 'Pp3c3_24390' => 'ppa', 'Pp3c3_2860' => 'ppa', 'PRCOL_00003193' => 'pco', 'Prupe.2G144500' => 'ppe', 'Prupe.2G195700' => 'ppe', 'Prupe.2G209800' => 'ppe', 'Prupe.5G080000' => 'ppe', 'Prupe.6G257900' => 'ppe', 'Psat3g001160' => 'psa', 'Psat6g181880' => 'psa', 'Psat7g233720' => 'psa', 'PSO063G7587' => 'pso', 'PSO339G2145' => 'pso', 'PSO339G3369' => 'pso', 'PSO478G2747' => 'pso', 'PSO513G0140' => 'pso', 'PSO782G1614' => 'pso', 'PSO782G4889' => 'pso', 'PSO782G5485' => 'pso', 'PSO801G0241' => 'pso', 'QL07p048854' => 'qlo', 'QL08p046745' => 'qlo', 'QL08p052606' => 'qlo', 'QL08p053414' => 'qlo', 'QL08p054868' => 'qlo', 'RcHm_v2.0_Chr1g0350251' => 'rch', 'RcHm_v2.0_Chr1g0360851' => 'rch', 'RcHm_v2.0_Chr1g0362791' => 'rch', 'RcHm_v2.0_Chr3g0466281' => 'rch', 'RcHm_v2.0_Chr7g0201481' => 'rch', 'Rhsim01G0148600' => 'rsi', 'Rhsim05G0194400' => 'rsi', 'Rhsim07G0000700' => 'rsi', 'Rhsim07G0000800' => 'rsi', 'Rhsim07G0027900' => 'rsi', 'Rhsim09G0149500' => 'rsi', 'RhsimUnG0186900' => 'rsi', 'Sabra01G0089900' => 'sbr', 'Sabra02G0114700' => 'sbr', 'Sabra02G0116300' => 'sbr', 'Sabra03G0080100' => 'sbr', 'Sabra08G0024300' => 'sbr', 'Sabra10G0174300' => 'sbr', 'Sabra14G0048900' => 'sbr', 'Sabra14G0076500' => 'sbr', 'SalBow5G2513' => 'sbo', 'Sc01g0002300' => 'sci', 'Sc01g0004450' => 'sci', 'Sc06g0001680' => 'sci', 'Sc23g0003580' => 'sci', 'Sed0000913' => 'sed', 'Sed0001655' => 'sed', 'Sed0007745' => 'sed', 'Sed0010951' => 'sed', 'Sed0017599' => 'sed', 'Sed0021405' => 'sed', 'Sed0022810' => 'sed', 'SEGI_07099' => 'sgi', 'SEGI_11931' => 'sgi', 'SEGI_13187' => 'sgi', 'SEGI_29958' => 'sgi', 'SEGI_36351' => 'sgi', 'SGA_v2.0_scaffold126G33770' => 'sas', 'SGA_v2.0_scaffold153G37003' => 'sas', 'SGA_v2.0_scaffold2G01359' => 'sas', 'SGA_v2.0_scaffold5G03064' => 'sas', 'SGA_v2.0_scaffold95G28903' => 'sas', 'SHI12701' => 'shi', 'SHI26410' => 'shi', 'SHI38997' => 'shi', 'SHI53759' => 'shi', 'SHI53886' => 'shi', 'SHI54714' => 'shi', 'SMO011G0041' => 'smo', 'SMO146G0251' => 'smo', 'SMO160G0004' => 'smo', 'SMO174G0057' => 'smo', 'SMO244G0089' => 'smo', 'SMO296G0011' => 'smo', 'Solyc01g091280.3' => 'sly', 'Solyc05g047610.3' => 'sly', 'Solyc05g047640.3' => 'sly', 'Solyc05g055630.3' => 'sly', 'Solyc10g018160.2' => 'sly', 'Solyc10g084820.2' => 'sly', 'Solyc10g086565.2' => 'sly', 'Sopen01g037030' => 'spe', 'Sopen05g027920' => 'spe', 'Sopen05g034070' => 'spe', 'Sopen10g007260' => 'spe', 'Sopen10g034260' => 'spe', 'Sopen10g035950' => 'spe', 'Sp3g07710' => 'spa', 'Sp4g27420' => 'spa', 'Sp5g02450' => 'spa', 'Sp6g01280' => 'spa', 'Sp6g38480' => 'spa', 'Sp7g20780' => 'spa', 'TAR374G1413' => 'tar', 'TAR623G1777' => 'tar', 'TAR629G2370' => 'tar', 'TAR633G1759' => 'tar', 'TAR636G3387' => 'tar', 'THA.LOC104802447' => 'tha', 'THA.LOC104813916' => 'tha', 'THA.LOC104816423' => 'tha', 'THA.LOC104817246' => 'tha', 'THA.LOC104825895' => 'tha', 'Thecc.01G335200' => 'tca', 'Thecc.01G377400' => 'tca', 'Thecc.03G262200' => 'tca', 'Thecc.05G036800' => 'tca', 'Thecc.10G080500' => 'tca', 'Thecc.10G080800' => 'tca', 'Thhalv10001560m.g' => 'esa', 'Thhalv10006120m.g' => 'esa', 'Thhalv10014375m.g' => 'esa', 'Thhalv10021264m.g' => 'esa', 'Thhalv10028856m.g' => 'esa', 'TPR.G1914' => 'tpr', 'TPR.G4757' => 'tpr', 'TPR.G5595' => 'tpr', 'TWI14G0952' => 'twi', 'TWI14G1307' => 'twi', 'TWI38G2143' => 'twi', 'TWI59G0826' => 'twi', 'TWI77G0527' => 'twi', 'TWI81G0150' => 'twi', 'unitig_21.g21018' => 'ugi', 'unitig_26.g9725' => 'ugi', 'unitig_744.g24653' => 'ugi', 'unitig_749.g13778' => 'ugi', 'unitig_899.g15035' => 'ugi', 'vmacro04296' => 'vma', 'vmacro04852' => 'vma', 'vmacro13404' => 'vma', 'vmacro20169' => 'vma', 'vmacro21014' => 'vma', 'VMungo0331G0237' => 'vmu', 'VMungo0331G0706' => 'vmu', 'VMungo0331G1361' => 'vmu', 'VMungo0331G1489' => 'vmu', 'VMungo0540G1037' => 'vmu', 'VMungo0720G2487' => 'vmu', 'VMungo0720G2721' => 'vmu', 'Zm00001eb086860' => 'zma', 'Zm00001eb104760' => 'zma', 'Zm00001eb148220' => 'zma', 'Zm00001eb259030' => 'zma', 'Zm00001eb289590' => 'zma', 'Zm00001eb420150' => 'zma' ) $gf_id = 'HOM05D000968' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000968' ) $data_identifier = 'HOM05D000968' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 19, 'bol' => (int) 9, 'bra' => (int) 12, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 5, 'ccan' => (int) 7, 'cde' => (int) 5, 'cfa' => (int) 8, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 4, 'dca' => (int) 5, 'din' => (int) 5, 'dzi' => (int) 12, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 25, 'fve' => (int) 5, 'gma' => (int) 9, 'ghi' => (int) 18, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 7, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 5, 'sun' => (int) 2, 'lal' => (int) 9, 'lja' => (int) 5, 'lonja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 9, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 2, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 3, 'stu' => (int) 6, 'pvu' => (int) 4, 'ptr' => (int) 8, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 3, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 1, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 5, 'sas' => (int) 5, 'shi' => (int) 6, 'smo' => (int) 6, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 3, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420150' $species_info = array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ) $local_species = 'vpl' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000968', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p31690' => 'bna', 'A03p36040' => 'bna', 'A03p53730' => 'bna', 'A04p01410' => 'bna', 'A05p05420' => 'bna', 'A05p39630' => 'bna', 'A05p39640' => 'bna', 'A09p00970' => 'bna', 'A09p53060' => 'bna', 'A10p31890' => 'bna', 'Aa31LG10G15040' => 'aar', 'Aa31LG1G21090' => 'aar', 'Aa31LG1G26900' => 'aar', 'Aa31LG3G1820' => 'aar', 'Aa31LG5G1100' => 'aar', 'Aa31LG6G4740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2265' => 'aag', 'Actinidia07998' => 'ach', 'Actinidia11266' => 'ach', 'Actinidia12682' => 'ach', 'Actinidia26479' => 'ach', 'Actinidia31406' => 'ach', 'Actinidia32437' => 'ach', 'Actinidia38862' => 'ach', 'Ah.05g174230' => 'amhyb', 'Ah.05g179070' => 'amhyb', 'Ah.05g179090' => 'amhyb', 'Ah.12g059950' => 'amhyb', 'AL3G20480' => 'aly', 'AL4G44520' => 'aly', 'AL5G43110' => 'aly', 'AL6G13890' => 'aly', 'AL6G52620' => 'aly', 'AL7G30830' => 'aly', 'Aqoxy1G00899' => 'aox', 'Aqoxy5G04333' => 'aox', 'Aqoxy7G00641' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3IZ0NN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4EF6AW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W9P8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79GA3M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C43NQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFCU6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G95YVJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCHK29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LU1UG8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX91RN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGB4B1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8DA0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9H7JI' => 'arhy', 'AT3G09320' => 'ath', 'AT3G60800' => 'ath', 'AT4G00840' => 'ath', 'AT4G22750' => 'ath', 'AT5G04270' => 'ath', 'ATR0090G003' => 'atr', 'ATR0559G349' => 'atr', 'ATR0680G261' => 'atr', 'ATR0810G048' => 'atr', 'Atru.chr12.831' => 'acertr', 'Atru.chr5.303' => 'acertr', 'Atru.chr5.748' => 'acertr', 'Atru.chr8.1999' => 'acertr', 'Atru.chr9.1436' => 'acertr', 'AUR62004211' => 'cqu', 'AUR62004548' => 'cqu', 'AUR62013637' => 'cqu', 'AUR62022662' => 'cqu', 'AUR62025777' => 'cqu', 'AUR62042386' => 'cqu', 'BcaB01g02310' => 'bca', 'BcaB01g06062' => 'bca', 'BcaB02g08975' => 'bca', 'BcaB02g08980' => 'bca', 'BcaC01g04228' => 'bca', 'BcaC01g06830' => 'bca', 'BcaC02g10186' => 'bca', 'BcaC02g12214' => 'bca', 'BcaC04g24101' => 'bca', 'BcaC05g29520' => 'bca', 'BcaC05g29661' => 'bca', 'BcaC06g32130' => 'bca', 'BcaC06g32131' => 'bca', 'BcaC07g40601' => 'bca', 'BcaC07g42641' => 'bca', 'BcaNung01038' => 'bca', 'BcaNung01676' => 'bca', 'BcaNung02480' => 'bca', 'BcaNung07376' => 'bca', 'BolC3t16146H' => 'bol', 'BolC3t16637H' => 'bol', 'BolC4t22257H' => 'bol', 'BolC4t24728H' => 'bol', 'BolC5t34517H' => 'bol', 'BolC7t45703H' => 'bol', 'BolC8t51166H' => 'bol', 'BolC9t53038H' => 'bol', 'BolC9t60000H' => 'bol', 'BraA01t01345Z' => 'bra', 'BraA01t01346Z' => 'bra', 'BraA01t01348Z' => 'bra', 'BraA03t12347Z' => 'bra', 'BraA03t12775Z' => 'bra', 'BraA03t14439Z' => 'bra', 'BraA04t15860Z' => 'bra', 'BraA05t19511Z' => 'bra', 'BraA05t22746Z' => 'bra', 'BraA09t35767Z' => 'bra', 'BraA09t40732Z' => 'bra', 'BraA10t45233Z' => 'bra', 'C03p38720' => 'bna', 'C03p43680' => 'bna', 'C04p06350' => 'bna', 'C04p31800' => 'bna', 'C05p58680' => 'bna', 'C07p52110' => 'bna', 'C08p35760' => 'bna', 'C09p01050' => 'bna', 'C09p72600' => 'bna', 'CAN.G106.2' => 'can', 'CAN.G1482.1' => 'can', 'CAN.G324.12' => 'can', 'CAN.G388.20' => 'can', 'CAN.G412.7' => 'can', 'CAN.G694.32' => 'can', 'CAN.G92.12' => 'can', 'CANSAT11G2353' => 'cansat', 'CANSAT21G1398' => 'cansat', 'CANSAT56G2456' => 'cansat', 'CANSAT56G3031' => 'cansat', 'CANSAT56G4539' => 'cansat', 'CARHR083680' => 'chi', 'CARHR171190' => 'chi', 'CARHR209010' => 'chi', 'CARHR229680' => 'chi', 'CARHR249490' => 'chi', 'Carub.0003s0844' => 'cru', 'Carub.0005s2755' => 'cru', 'Carub.0006s0322' => 'cru', 'Carub.0006s3586' => 'cru', 'Carub.0007s1855' => 'cru', 'Ca_07808_v3' => 'car', 'Ca_09535_v3' => 'car', 'Ca_10548_v3' => 'car', 'Ca_19913_v3' => 'car', 'Ca_19916_v3' => 'car', 'Ca_19975_v3' => 'car', 'CBR_g22876' => 'cbr', 'CBR_g22879' => 'cbr', 'CBR_g38491' => 'cbr', 'CBR_g54185' => 'cbr', 'CBR_g54190' => 'cbr', 'Cc02_g11020' => 'ccan', 'Cc02_g23920' => 'ccan', 'Cc02_g39860' => 'ccan', 'Cc02_g39870' => 'ccan', 'Cc03_g06760' => 'ccan', 'Cc06_g02450' => 'ccan', 'Cc09_g09450' => 'ccan', 'CDE02G1959' => 'cde', 'CDE04G0600' => 'cde', 'CDE07G1996' => 'cde', 'CDE07G2078' => 'cde', 'CDE11G0611' => 'cde', 'Cfa001683' => 'cfa', 'Cfa001734' => 'cfa', 'Cfa001737' => 'cfa', 'Cfa003751' => 'cfa', 'Cfa012019' => 'cfa', 'Cfa017353' => 'cfa', 'Cfa017732' => 'cfa', 'Cfa022464' => 'cfa', 'Ciclev10012400m.g' => 'ccl', 'Ciclev10021242m.g' => 'ccl', 'Ciclev10021302m.g' => 'ccl', 'Ciclev10021463m.g' => 'ccl', 'Ciclev10032359m.g' => 'ccl', 'CiPaw.01G081000' => 'cil', 'CiPaw.01G262500' => 'cil', 'CiPaw.01G269800' => 'cil', 'CiPaw.02G168400' => 'cil', 'CiPaw.05G119500' => 'cil', 'CiPaw.11G147300' => 'cil', 'ClCG01G003630' => 'cla', 'ClCG05G000510' => 'cla', 'ClCG05G002300' => 'cla', 'ClCG08G007650' => 'cla', 'ClCG10G021250' => 'cla', 'COL.COLO4_06218' => 'col', 'COL.COLO4_12538' => 'col', 'COL.COLO4_14775' => 'col', 'COL.COLO4_23875' => 'col', 'Cpa.g.sc141.16' => 'cpa', 'Cpa.g.sc169.16' => 'cpa', 'Cpa.g.sc244.4' => 'cpa', 'Cpa.g.sc244.5' => 'cpa', 'Cpa.g.sc29.87' => 'cpa', 'Cpa.g.sc53.115' => 'cpa', 'Cre03.g207502' => 'cre', 'Cre06.g277000' => 'cre', 'Cre09.g394050' => 'cre', 'CsaV3_3G007680' => 'csa', 'CsaV3_3G009710' => 'csa', 'CsaV3_3G034790' => 'csa', 'CsaV3_5G003750' => 'csa', 'CsaV3_6G036620' => 'csa', 'CSS0002288' => 'camsi', 'CSS0011250' => 'camsi', 'CSS0021619' => 'camsi', 'CSS0046701' => 'camsi', 'DCAR_006420' => 'dca', 'DCAR_006865' => 'dca', 'DCAR_008558' => 'dca', 'DCAR_028754' => 'dca', 'DCAR_028755' => 'dca', 'Dinv31218' => 'din', 'Dinv32371' => 'din', 'Dinv34250' => 'din', 'Dinv37156' => 'din', 'Dinv43704' => 'din', 'Duzib093G1811' => 'dzi', 'Duzib106G1622' => 'dzi', 'Duzib114G0504' => 'dzi', 'Duzib128G0338' => 'dzi', 'Duzib128G1577' => 'dzi', 'Duzib133G0104' => 'dzi', 'Duzib133G1080' => 'dzi', 'Duzib138G0324' => 'dzi', 'Duzib138G0394' => 'dzi', 'Duzib205G0122' => 'dzi', 'Duzib268G1020' => 'dzi', 'Duzib268G1359' => 'dzi', 'ECA232G3929' => 'eca', 'ECA236G2210' => 'eca', 'ECA236G2287' => 'eca', 'ECA240G4568' => 'eca', 'ECA247G0894' => 'eca', 'EL10Ac1g00200' => 'bvu', 'EL10Ac1g00886' => 'bvu', 'EL10As1g23091' => 'bvu', 'EL10As1g23092' => 'bvu', 'Eucgr.A01284' => 'egr', 'Eucgr.A01285' => 'egr', 'Eucgr.D02456' => 'egr', 'Eucgr.E00018' => 'egr', 'Eucgr.E01439' => 'egr', 'Eucgr.G02859' => 'egr', 'FAN01G0168' => 'fan', 'FAN01G0453' => 'fan', 'FAN01G2761' => 'fan', 'FAN02G1239' => 'fan', 'FAN03G0645' => 'fan', 'FAN03G2707' => 'fan', 'FAN03G2978' => 'fan', 'FAN04G0227' => 'fan', 'FAN06G0091' => 'fan', 'FAN06G1418' => 'fan', 'FAN06G1512' => 'fan', 'FAN06G1986' => 'fan', 'FAN06G2905' => 'fan', 'FAN06G4325' => 'fan', 'FAN08G0033' => 'fan', 'FAN09G0642' => 'fan', 'FAN10G1763' => 'fan', 'FAN10G2026' => 'fan', 'FAN10G2513' => 'fan', 'FAN10G3402' => 'fan', 'FAN10G3564' => 'fan', 'FAN10G3987' => 'fan', 'FAN13G1490' => 'fan', 'FAN14G5857' => 'fan', 'FAN18G1188' => 'fan', 'FvH4_5g00750' => 'fve', 'FvH4_6g13410' => 'fve', 'FvH4_7g11740' => 'fve', 'FvH4_7g17410' => 'fve', 'FvH4_7g18860' => 'fve', 'Glyma.01G099100' => 'gma', 'Glyma.01G142300' => 'gma', 'Glyma.03G025500' => 'gma', 'Glyma.03G069700' => 'gma', 'Glyma.03G260000' => 'gma', 'Glyma.09G269800' => 'gma', 'Glyma.10G208700' => 'gma', 'Glyma.18G220400' => 'gma', 'Glyma.20G182000' => 'gma', 'Gohir.A01G221726' => 'ghi', 'Gohir.A07G134600' => 'ghi', 'Gohir.A07G146000' => 'ghi', 'Gohir.A08G173900' => 'ghi', 'Gohir.A09G194900' => 'ghi', 'Gohir.A10G204100' => 'ghi', 'Gohir.A11G080600' => 'ghi', 'Gohir.A11G327500' => 'ghi', 'Gohir.A12G101800' => 'ghi', 'Gohir.D01G211200' => 'ghi', 'Gohir.D07G139200' => 'ghi', 'Gohir.D07G152100' => 'ghi', 'Gohir.D08G192600' => 'ghi', 'Gohir.D09G189200' => 'ghi', 'Gohir.D10G212000' => 'ghi', 'Gohir.D11G085200' => 'ghi', 'Gohir.D11G346400' => 'ghi', 'Gohir.D12G104800' => 'ghi', 'Gorai.001G151300' => 'gra', 'Gorai.001G174100' => 'gra', 'Gorai.002G257000' => 'gra', 'Gorai.004G202600' => 'gra', 'Gorai.007G090900' => 'gra', 'Gorai.007G376700' => 'gra', 'Gorai.008G114100' => 'gra', 'Gorai.011G237900' => 'gra', 'GSVIVG01005450001' => 'vvi', 'GSVIVG01016232001' => 'vvi', 'GSVIVG01026157001' => 'vvi', 'GSVIVG01027419001' => 'vvi', 'GSVIVG01027631001' => 'vvi', 'GSVIVG01034143001' => 'vvi', 'HanXRQChr03g0093921' => 'han', 'HanXRQChr04g0120001' => 'han', 'HanXRQChr04g0122561' => 'han', 'HanXRQChr09g0246851' => 'han', 'HanXRQChr10g0293311' => 'han', 'HanXRQChr13g0425231' => 'han', 'HanXRQChr16g0532571' => 'han', 'Haze_09050' => 'cav', 'Haze_15715' => 'cav', 'Haze_15716' => 'cav', 'Haze_16803' => 'cav', 'Haze_16850' => 'cav', 'Hma1.2p1_0301F.1_g118655' => 'hma', 'Hma1.2p1_0309F.1_g120590' => 'hma', 'Hma1.2p1_0936F.1_g238900' => 'hma', 'Hma1.2p1_3552F.1_g336740' => 'hma', 'HPP92_003520' => 'vpl', 'HPP92_006628' => 'vpl', 'HPP92_006645' => 'vpl', 'HPP92_014669' => 'vpl', 'HPP92_015077' => 'vpl', 'Hund16742' => 'sun', 'Hund17022' => 'sun', 'Lalb_Chr02g0152131' => 'lal', 'Lalb_Chr05g0225371' => 'lal', 'Lalb_Chr07g0189841' => 'lal', 'Lalb_Chr07g0192961' => 'lal', 'Lalb_Chr12g0208221' => 'lal', 'Lalb_Chr13g0291211' => 'lal', 'Lalb_Chr13g0291781' => 'lal', 'Lalb_Chr18g0044651' => 'lal', 'Lalb_Chr21g0313731' => 'lal', 'Lj1g0022533' => 'lja', 'Lj2A18T50' => 'lonja', 'Lj2A92G93' => 'lonja', 'Lj3A965T73' => 'lonja', 'Lj3g0000673' => 'lja', 'Lj3g0002666' => 'lja', 'Lj4g0016985' => 'lja', 'Lj5g0003625' => 'lja', 'Lj7A529G36' => 'lonja', 'Lj9A569T49' => 'lonja', 'Lj9A604T63' => 'lonja', 'Lsat_1_v5_gn_3_132060' => 'lsa', 'Lsat_1_v5_gn_4_68941' => 'lsa', 'Lsat_1_v5_gn_5_95580' => 'lsa', 'Lsat_1_v5_gn_7_161' => 'lsa', 'Lsat_1_v5_gn_7_7041' => 'lsa', 'Lsat_1_v5_gn_9_33481' => 'lsa', 'Lsat_1_v5_gn_9_68260' => 'lsa', 'Manes.01G073100' => 'mes', 'Manes.01G266300' => 'mes', 'Manes.02G033300' => 'mes', 'Manes.05G017900' => 'mes', 'Manes.05G046100' => 'mes', 'Manes.08G080900' => 'mes', 'Manes.10G049400' => 'mes', 'Mapoly0009s0186' => 'mpo', 'Mapoly0036s0118' => 'mpo', 'Mapoly0101s0046' => 'mpo', 'MBI04_g30218_MAGBIO' => 'mbi', 'MBI04_g35564_MAGBIO' => 'mbi', 'MBI12_g34011_MAGBIO' => 'mbi', 'MBI14_g04655_MAGBIO' => 'mbi', 'MCO07G653' => 'mco', 'MCO10G173' => 'mco', 'MD01G1087100' => 'mdo', 'MD01G1104200' => 'mdo', 'MD02G1205100' => 'mdo', 'MD04G1079200' => 'mdo', 'MD04G1131400' => 'mdo', 'MD07G1121600' => 'mdo', 'MD07G1157300' => 'mdo', 'MD07G1171000' => 'mdo', 'MD12G1144500' => 'mdo', 'Medtr1g094610' => 'mtr', 'Medtr4g021795' => 'mtr', 'Medtr4g023760' => 'mtr', 'Medtr7g118050' => 'mtr', 'MELO3C005582.2' => 'cme', 'MELO3C005989.2' => 'cme', 'MELO3C006192.2' => 'cme', 'MELO3C009248.2' => 'cme', 'MELO3C019817.2' => 'cme', 'Migut.B01625' => 'egut', 'Migut.B01915' => 'egut', 'Migut.F01721' => 'egut', 'Migut.J00314' => 'egut', 'MSTRG.20742' => 'ama', 'MSTRG.8134' => 'ama', 'Nitab4.5_0000096g0010' => 'nta', 'Nitab4.5_0000202g0030' => 'nta', 'Nitab4.5_0000216g0370' => 'nta', 'Nitab4.5_0000457g0230' => 'nta', 'Nitab4.5_0001702g0170' => 'nta', 'Nitab4.5_0003607g0010' => 'nta', 'Nitab4.5_0004917g0020' => 'nta', 'Nitab4.5_0007059g0010' => 'nta', 'Nitab4.5_0007184g0010' => 'nta', 'Nitab4.5_0007346g0020' => 'nta', 'Nn1g00410' => 'nnu', 'Nn1g01252' => 'nnu', 'Nn2g11168' => 'nnu', 'Nn2g13403' => 'nnu', 'Nn2g13760' => 'nnu', 'Nn4g26380' => 'nnu', 'Oeu000806.2' => 'oeu', 'Oeu005788.1' => 'oeu', 'Oeu006900.3' => 'oeu', 'Oeu007797.1' => 'oeu', 'Oeu011932.1' => 'oeu', 'Oeu022739.1' => 'oeu', 'Oeu037918.1' => 'oeu', 'Oeu055490.2' => 'oeu', 'Os01g0844400' => 'osa', 'Os02g0819100' => 'osa', 'Os03g0804300' => 'osa', 'Os05g0458000' => 'osa', 'Os07g0467800' => 'osa', 'Os12g0602200' => 'osa', 'Peaxi162Scf00013g03444' => 'pax', 'Peaxi162Scf00094g01120' => 'pax', 'Peaxi162Scf00191g01211' => 'pax', 'Peaxi162Scf00238g01110' => 'pax', 'Peaxi162Scf00330g00719' => 'pax', 'Peaxi162Scf00627g00018' => 'pax', 'PGR031G2686' => 'pgr', 'PGR042G0809' => 'pgr', 'PGR142G0193' => 'pgr', 'PGSC0003DMG400011066' => 'stu', 'PGSC0003DMG400012041' => 'stu', 'PGSC0003DMG400013678' => 'stu', 'PGSC0003DMG400023477' => 'stu', 'PGSC0003DMG400025956' => 'stu', 'PGSC0003DMG401019151' => 'stu', 'Phvul.006G116400' => 'pvu', 'Phvul.007G097300' => 'pvu', 'Phvul.010G015000' => 'pvu', 'Phvul.010G083900' => 'pvu', 'Potri.001G117100' => 'ptr', 'Potri.002G147300' => 'ptr', 'Potri.003G115600' => 'ptr', 'Potri.006G087400' => 'ptr', 'Potri.010G226100' => 'ptr', 'Potri.014G069200' => 'ptr', 'Potri.014G104000' => 'ptr', 'Potri.016G100200' => 'ptr', 'Pp3c10_20450' => 'ppa', 'Pp3c1_42400' => 'ppa', 'Pp3c3_24390' => 'ppa', 'Pp3c3_2860' => 'ppa', 'PRCOL_00003193' => 'pco', 'Prupe.2G144500' => 'ppe', 'Prupe.2G195700' => 'ppe', 'Prupe.2G209800' => 'ppe', 'Prupe.5G080000' => 'ppe', 'Prupe.6G257900' => 'ppe', 'Psat3g001160' => 'psa', 'Psat6g181880' => 'psa', 'Psat7g233720' => 'psa', 'PSO063G7587' => 'pso', 'PSO339G2145' => 'pso', 'PSO339G3369' => 'pso', 'PSO478G2747' => 'pso', 'PSO513G0140' => 'pso', 'PSO782G1614' => 'pso', 'PSO782G4889' => 'pso', 'PSO782G5485' => 'pso', 'PSO801G0241' => 'pso', 'QL07p048854' => 'qlo', 'QL08p046745' => 'qlo', 'QL08p052606' => 'qlo', 'QL08p053414' => 'qlo', 'QL08p054868' => 'qlo', 'RcHm_v2.0_Chr1g0350251' => 'rch', 'RcHm_v2.0_Chr1g0360851' => 'rch', 'RcHm_v2.0_Chr1g0362791' => 'rch', 'RcHm_v2.0_Chr3g0466281' => 'rch', 'RcHm_v2.0_Chr7g0201481' => 'rch', 'Rhsim01G0148600' => 'rsi', 'Rhsim05G0194400' => 'rsi', 'Rhsim07G0000700' => 'rsi', 'Rhsim07G0000800' => 'rsi', 'Rhsim07G0027900' => 'rsi', 'Rhsim09G0149500' => 'rsi', 'RhsimUnG0186900' => 'rsi', 'Sabra01G0089900' => 'sbr', 'Sabra02G0114700' => 'sbr', 'Sabra02G0116300' => 'sbr', 'Sabra03G0080100' => 'sbr', 'Sabra08G0024300' => 'sbr', 'Sabra10G0174300' => 'sbr', 'Sabra14G0048900' => 'sbr', 'Sabra14G0076500' => 'sbr', 'SalBow5G2513' => 'sbo', 'Sc01g0002300' => 'sci', 'Sc01g0004450' => 'sci', 'Sc06g0001680' => 'sci', 'Sc23g0003580' => 'sci', 'Sed0000913' => 'sed', 'Sed0001655' => 'sed', 'Sed0007745' => 'sed', 'Sed0010951' => 'sed', 'Sed0017599' => 'sed', 'Sed0021405' => 'sed', 'Sed0022810' => 'sed', 'SEGI_07099' => 'sgi', 'SEGI_11931' => 'sgi', 'SEGI_13187' => 'sgi', 'SEGI_29958' => 'sgi', 'SEGI_36351' => 'sgi', 'SGA_v2.0_scaffold126G33770' => 'sas', 'SGA_v2.0_scaffold153G37003' => 'sas', 'SGA_v2.0_scaffold2G01359' => 'sas', 'SGA_v2.0_scaffold5G03064' => 'sas', 'SGA_v2.0_scaffold95G28903' => 'sas', 'SHI12701' => 'shi', 'SHI26410' => 'shi', 'SHI38997' => 'shi', 'SHI53759' => 'shi', 'SHI53886' => 'shi', 'SHI54714' => 'shi', 'SMO011G0041' => 'smo', 'SMO146G0251' => 'smo', 'SMO160G0004' => 'smo', 'SMO174G0057' => 'smo', 'SMO244G0089' => 'smo', 'SMO296G0011' => 'smo', 'Solyc01g091280.3' => 'sly', 'Solyc05g047610.3' => 'sly', 'Solyc05g047640.3' => 'sly', 'Solyc05g055630.3' => 'sly', 'Solyc10g018160.2' => 'sly', 'Solyc10g084820.2' => 'sly', 'Solyc10g086565.2' => 'sly', 'Sopen01g037030' => 'spe', 'Sopen05g027920' => 'spe', 'Sopen05g034070' => 'spe', 'Sopen10g007260' => 'spe', 'Sopen10g034260' => 'spe', 'Sopen10g035950' => 'spe', 'Sp3g07710' => 'spa', 'Sp4g27420' => 'spa', 'Sp5g02450' => 'spa', 'Sp6g01280' => 'spa', 'Sp6g38480' => 'spa', 'Sp7g20780' => 'spa', 'TAR374G1413' => 'tar', 'TAR623G1777' => 'tar', 'TAR629G2370' => 'tar', 'TAR633G1759' => 'tar', 'TAR636G3387' => 'tar', 'THA.LOC104802447' => 'tha', 'THA.LOC104813916' => 'tha', 'THA.LOC104816423' => 'tha', 'THA.LOC104817246' => 'tha', 'THA.LOC104825895' => 'tha', 'Thecc.01G335200' => 'tca', 'Thecc.01G377400' => 'tca', 'Thecc.03G262200' => 'tca', 'Thecc.05G036800' => 'tca', 'Thecc.10G080500' => 'tca', 'Thecc.10G080800' => 'tca', 'Thhalv10001560m.g' => 'esa', 'Thhalv10006120m.g' => 'esa', 'Thhalv10014375m.g' => 'esa', 'Thhalv10021264m.g' => 'esa', 'Thhalv10028856m.g' => 'esa', 'TPR.G1914' => 'tpr', 'TPR.G4757' => 'tpr', 'TPR.G5595' => 'tpr', 'TWI14G0952' => 'twi', 'TWI14G1307' => 'twi', 'TWI38G2143' => 'twi', 'TWI59G0826' => 'twi', 'TWI77G0527' => 'twi', 'TWI81G0150' => 'twi', 'unitig_21.g21018' => 'ugi', 'unitig_26.g9725' => 'ugi', 'unitig_744.g24653' => 'ugi', 'unitig_749.g13778' => 'ugi', 'unitig_899.g15035' => 'ugi', 'vmacro04296' => 'vma', 'vmacro04852' => 'vma', 'vmacro13404' => 'vma', 'vmacro20169' => 'vma', 'vmacro21014' => 'vma', 'VMungo0331G0237' => 'vmu', 'VMungo0331G0706' => 'vmu', 'VMungo0331G1361' => 'vmu', 'VMungo0331G1489' => 'vmu', 'VMungo0540G1037' => 'vmu', 'VMungo0720G2487' => 'vmu', 'VMungo0720G2721' => 'vmu', 'Zm00001eb086860' => 'zma', 'Zm00001eb104760' => 'zma', 'Zm00001eb148220' => 'zma', 'Zm00001eb259030' => 'zma', 'Zm00001eb289590' => 'zma', 'Zm00001eb420150' => 'zma' ), 'gf_id' => 'HOM05D000968', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000968' ), 'data_identifier' => 'HOM05D000968', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000968', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p31690' => 'bna', 'A03p36040' => 'bna', 'A03p53730' => 'bna', 'A04p01410' => 'bna', 'A05p05420' => 'bna', 'A05p39630' => 'bna', 'A05p39640' => 'bna', 'A09p00970' => 'bna', 'A09p53060' => 'bna', 'A10p31890' => 'bna', 'Aa31LG10G15040' => 'aar', 'Aa31LG1G21090' => 'aar', 'Aa31LG1G26900' => 'aar', 'Aa31LG3G1820' => 'aar', 'Aa31LG5G1100' => 'aar', 'Aa31LG6G4740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2265' => 'aag', 'Actinidia07998' => 'ach', 'Actinidia11266' => 'ach', 'Actinidia12682' => 'ach', 'Actinidia26479' => 'ach', 'Actinidia31406' => 'ach', 'Actinidia32437' => 'ach', 'Actinidia38862' => 'ach', 'Ah.05g174230' => 'amhyb', 'Ah.05g179070' => 'amhyb', 'Ah.05g179090' => 'amhyb', 'Ah.12g059950' => 'amhyb', 'AL3G20480' => 'aly', 'AL4G44520' => 'aly', 'AL5G43110' => 'aly', 'AL6G13890' => 'aly', 'AL6G52620' => 'aly', 'AL7G30830' => 'aly', 'Aqoxy1G00899' => 'aox', 'Aqoxy5G04333' => 'aox', 'Aqoxy7G00641' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3IZ0NN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4EF6AW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W9P8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79GA3M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C43NQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFCU6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G95YVJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCHK29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LU1UG8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX91RN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGB4B1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8DA0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9H7JI' => 'arhy', 'AT3G09320' => 'ath', 'AT3G60800' => 'ath', 'AT4G00840' => 'ath', 'AT4G22750' => 'ath', 'AT5G04270' => 'ath', 'ATR0090G003' => 'atr', 'ATR0559G349' => 'atr', 'ATR0680G261' => 'atr', 'ATR0810G048' => 'atr', 'Atru.chr12.831' => 'acertr', 'Atru.chr5.303' => 'acertr', 'Atru.chr5.748' => 'acertr', 'Atru.chr8.1999' => 'acertr', 'Atru.chr9.1436' => 'acertr', 'AUR62004211' => 'cqu', 'AUR62004548' => 'cqu', 'AUR62013637' => 'cqu', 'AUR62022662' => 'cqu', 'AUR62025777' => 'cqu', 'AUR62042386' => 'cqu', 'BcaB01g02310' => 'bca', 'BcaB01g06062' => 'bca', 'BcaB02g08975' => 'bca', 'BcaB02g08980' => 'bca', 'BcaC01g04228' => 'bca', 'BcaC01g06830' => 'bca', 'BcaC02g10186' => 'bca', 'BcaC02g12214' => 'bca', 'BcaC04g24101' => 'bca', 'BcaC05g29520' => 'bca', 'BcaC05g29661' => 'bca', 'BcaC06g32130' => 'bca', 'BcaC06g32131' => 'bca', 'BcaC07g40601' => 'bca', 'BcaC07g42641' => 'bca', 'BcaNung01038' => 'bca', 'BcaNung01676' => 'bca', 'BcaNung02480' => 'bca', 'BcaNung07376' => 'bca', 'BolC3t16146H' => 'bol', 'BolC3t16637H' => 'bol', 'BolC4t22257H' => 'bol', 'BolC4t24728H' => 'bol', 'BolC5t34517H' => 'bol', 'BolC7t45703H' => 'bol', 'BolC8t51166H' => 'bol', 'BolC9t53038H' => 'bol', 'BolC9t60000H' => 'bol', 'BraA01t01345Z' => 'bra', 'BraA01t01346Z' => 'bra', 'BraA01t01348Z' => 'bra', 'BraA03t12347Z' => 'bra', 'BraA03t12775Z' => 'bra', 'BraA03t14439Z' => 'bra', 'BraA04t15860Z' => 'bra', 'BraA05t19511Z' => 'bra', 'BraA05t22746Z' => 'bra', 'BraA09t35767Z' => 'bra', 'BraA09t40732Z' => 'bra', 'BraA10t45233Z' => 'bra', 'C03p38720' => 'bna', 'C03p43680' => 'bna', 'C04p06350' => 'bna', 'C04p31800' => 'bna', 'C05p58680' => 'bna', 'C07p52110' => 'bna', 'C08p35760' => 'bna', 'C09p01050' => 'bna', 'C09p72600' => 'bna', 'CAN.G106.2' => 'can', 'CAN.G1482.1' => 'can', 'CAN.G324.12' => 'can', 'CAN.G388.20' => 'can', 'CAN.G412.7' => 'can', 'CAN.G694.32' => 'can', 'CAN.G92.12' => 'can', 'CANSAT11G2353' => 'cansat', 'CANSAT21G1398' => 'cansat', 'CANSAT56G2456' => 'cansat', 'CANSAT56G3031' => 'cansat', 'CANSAT56G4539' => 'cansat', 'CARHR083680' => 'chi', 'CARHR171190' => 'chi', 'CARHR209010' => 'chi', 'CARHR229680' => 'chi', 'CARHR249490' => 'chi', 'Carub.0003s0844' => 'cru', 'Carub.0005s2755' => 'cru', 'Carub.0006s0322' => 'cru', 'Carub.0006s3586' => 'cru', 'Carub.0007s1855' => 'cru', 'Ca_07808_v3' => 'car', 'Ca_09535_v3' => 'car', 'Ca_10548_v3' => 'car', 'Ca_19913_v3' => 'car', 'Ca_19916_v3' => 'car', 'Ca_19975_v3' => 'car', 'CBR_g22876' => 'cbr', 'CBR_g22879' => 'cbr', 'CBR_g38491' => 'cbr', 'CBR_g54185' => 'cbr', 'CBR_g54190' => 'cbr', 'Cc02_g11020' => 'ccan', 'Cc02_g23920' => 'ccan', 'Cc02_g39860' => 'ccan', 'Cc02_g39870' => 'ccan', 'Cc03_g06760' => 'ccan', 'Cc06_g02450' => 'ccan', 'Cc09_g09450' => 'ccan', 'CDE02G1959' => 'cde', 'CDE04G0600' => 'cde', 'CDE07G1996' => 'cde', 'CDE07G2078' => 'cde', 'CDE11G0611' => 'cde', 'Cfa001683' => 'cfa', 'Cfa001734' => 'cfa', 'Cfa001737' => 'cfa', 'Cfa003751' => 'cfa', 'Cfa012019' => 'cfa', 'Cfa017353' => 'cfa', 'Cfa017732' => 'cfa', 'Cfa022464' => 'cfa', 'Ciclev10012400m.g' => 'ccl', 'Ciclev10021242m.g' => 'ccl', 'Ciclev10021302m.g' => 'ccl', 'Ciclev10021463m.g' => 'ccl', 'Ciclev10032359m.g' => 'ccl', 'CiPaw.01G081000' => 'cil', 'CiPaw.01G262500' => 'cil', 'CiPaw.01G269800' => 'cil', 'CiPaw.02G168400' => 'cil', 'CiPaw.05G119500' => 'cil', 'CiPaw.11G147300' => 'cil', 'ClCG01G003630' => 'cla', 'ClCG05G000510' => 'cla', 'ClCG05G002300' => 'cla', 'ClCG08G007650' => 'cla', 'ClCG10G021250' => 'cla', 'COL.COLO4_06218' => 'col', 'COL.COLO4_12538' => 'col', 'COL.COLO4_14775' => 'col', 'COL.COLO4_23875' => 'col', 'Cpa.g.sc141.16' => 'cpa', 'Cpa.g.sc169.16' => 'cpa', 'Cpa.g.sc244.4' => 'cpa', 'Cpa.g.sc244.5' => 'cpa', 'Cpa.g.sc29.87' => 'cpa', 'Cpa.g.sc53.115' => 'cpa', 'Cre03.g207502' => 'cre', 'Cre06.g277000' => 'cre', 'Cre09.g394050' => 'cre', 'CsaV3_3G007680' => 'csa', 'CsaV3_3G009710' => 'csa', 'CsaV3_3G034790' => 'csa', 'CsaV3_5G003750' => 'csa', 'CsaV3_6G036620' => 'csa', 'CSS0002288' => 'camsi', 'CSS0011250' => 'camsi', 'CSS0021619' => 'camsi', 'CSS0046701' => 'camsi', 'DCAR_006420' => 'dca', 'DCAR_006865' => 'dca', 'DCAR_008558' => 'dca', 'DCAR_028754' => 'dca', 'DCAR_028755' => 'dca', 'Dinv31218' => 'din', 'Dinv32371' => 'din', 'Dinv34250' => 'din', 'Dinv37156' => 'din', 'Dinv43704' => 'din', 'Duzib093G1811' => 'dzi', 'Duzib106G1622' => 'dzi', 'Duzib114G0504' => 'dzi', 'Duzib128G0338' => 'dzi', 'Duzib128G1577' => 'dzi', 'Duzib133G0104' => 'dzi', 'Duzib133G1080' => 'dzi', 'Duzib138G0324' => 'dzi', 'Duzib138G0394' => 'dzi', 'Duzib205G0122' => 'dzi', 'Duzib268G1020' => 'dzi', 'Duzib268G1359' => 'dzi', 'ECA232G3929' => 'eca', 'ECA236G2210' => 'eca', 'ECA236G2287' => 'eca', 'ECA240G4568' => 'eca', 'ECA247G0894' => 'eca', 'EL10Ac1g00200' => 'bvu', 'EL10Ac1g00886' => 'bvu', 'EL10As1g23091' => 'bvu', 'EL10As1g23092' => 'bvu', 'Eucgr.A01284' => 'egr', 'Eucgr.A01285' => 'egr', 'Eucgr.D02456' => 'egr', 'Eucgr.E00018' => 'egr', 'Eucgr.E01439' => 'egr', 'Eucgr.G02859' => 'egr', 'FAN01G0168' => 'fan', 'FAN01G0453' => 'fan', 'FAN01G2761' => 'fan', 'FAN02G1239' => 'fan', 'FAN03G0645' => 'fan', 'FAN03G2707' => 'fan', 'FAN03G2978' => 'fan', 'FAN04G0227' => 'fan', 'FAN06G0091' => 'fan', 'FAN06G1418' => 'fan', 'FAN06G1512' => 'fan', 'FAN06G1986' => 'fan', 'FAN06G2905' => 'fan', 'FAN06G4325' => 'fan', 'FAN08G0033' => 'fan', 'FAN09G0642' => 'fan', 'FAN10G1763' => 'fan', 'FAN10G2026' => 'fan', 'FAN10G2513' => 'fan', 'FAN10G3402' => 'fan', 'FAN10G3564' => 'fan', 'FAN10G3987' => 'fan', 'FAN13G1490' => 'fan', 'FAN14G5857' => 'fan', 'FAN18G1188' => 'fan', 'FvH4_5g00750' => 'fve', 'FvH4_6g13410' => 'fve', 'FvH4_7g11740' => 'fve', 'FvH4_7g17410' => 'fve', 'FvH4_7g18860' => 'fve', 'Glyma.01G099100' => 'gma', 'Glyma.01G142300' => 'gma', 'Glyma.03G025500' => 'gma', 'Glyma.03G069700' => 'gma', 'Glyma.03G260000' => 'gma', 'Glyma.09G269800' => 'gma', 'Glyma.10G208700' => 'gma', 'Glyma.18G220400' => 'gma', 'Glyma.20G182000' => 'gma', 'Gohir.A01G221726' => 'ghi', 'Gohir.A07G134600' => 'ghi', 'Gohir.A07G146000' => 'ghi', 'Gohir.A08G173900' => 'ghi', 'Gohir.A09G194900' => 'ghi', 'Gohir.A10G204100' => 'ghi', 'Gohir.A11G080600' => 'ghi', 'Gohir.A11G327500' => 'ghi', 'Gohir.A12G101800' => 'ghi', 'Gohir.D01G211200' => 'ghi', 'Gohir.D07G139200' => 'ghi', 'Gohir.D07G152100' => 'ghi', 'Gohir.D08G192600' => 'ghi', 'Gohir.D09G189200' => 'ghi', 'Gohir.D10G212000' => 'ghi', 'Gohir.D11G085200' => 'ghi', 'Gohir.D11G346400' => 'ghi', 'Gohir.D12G104800' => 'ghi', 'Gorai.001G151300' => 'gra', 'Gorai.001G174100' => 'gra', 'Gorai.002G257000' => 'gra', 'Gorai.004G202600' => 'gra', 'Gorai.007G090900' => 'gra', 'Gorai.007G376700' => 'gra', 'Gorai.008G114100' => 'gra', 'Gorai.011G237900' => 'gra', 'GSVIVG01005450001' => 'vvi', 'GSVIVG01016232001' => 'vvi', 'GSVIVG01026157001' => 'vvi', 'GSVIVG01027419001' => 'vvi', 'GSVIVG01027631001' => 'vvi', 'GSVIVG01034143001' => 'vvi', 'HanXRQChr03g0093921' => 'han', 'HanXRQChr04g0120001' => 'han', 'HanXRQChr04g0122561' => 'han', 'HanXRQChr09g0246851' => 'han', 'HanXRQChr10g0293311' => 'han', 'HanXRQChr13g0425231' => 'han', 'HanXRQChr16g0532571' => 'han', 'Haze_09050' => 'cav', 'Haze_15715' => 'cav', 'Haze_15716' => 'cav', 'Haze_16803' => 'cav', 'Haze_16850' => 'cav', 'Hma1.2p1_0301F.1_g118655' => 'hma', 'Hma1.2p1_0309F.1_g120590' => 'hma', 'Hma1.2p1_0936F.1_g238900' => 'hma', 'Hma1.2p1_3552F.1_g336740' => 'hma', 'HPP92_003520' => 'vpl', 'HPP92_006628' => 'vpl', 'HPP92_006645' => 'vpl', 'HPP92_014669' => 'vpl', 'HPP92_015077' => 'vpl', 'Hund16742' => 'sun', 'Hund17022' => 'sun', 'Lalb_Chr02g0152131' => 'lal', 'Lalb_Chr05g0225371' => 'lal', 'Lalb_Chr07g0189841' => 'lal', 'Lalb_Chr07g0192961' => 'lal', 'Lalb_Chr12g0208221' => 'lal', 'Lalb_Chr13g0291211' => 'lal', 'Lalb_Chr13g0291781' => 'lal', 'Lalb_Chr18g0044651' => 'lal', 'Lalb_Chr21g0313731' => 'lal', 'Lj1g0022533' => 'lja', 'Lj2A18T50' => 'lonja', 'Lj2A92G93' => 'lonja', 'Lj3A965T73' => 'lonja', 'Lj3g0000673' => 'lja', 'Lj3g0002666' => 'lja', 'Lj4g0016985' => 'lja', 'Lj5g0003625' => 'lja', 'Lj7A529G36' => 'lonja', 'Lj9A569T49' => 'lonja', 'Lj9A604T63' => 'lonja', 'Lsat_1_v5_gn_3_132060' => 'lsa', 'Lsat_1_v5_gn_4_68941' => 'lsa', 'Lsat_1_v5_gn_5_95580' => 'lsa', 'Lsat_1_v5_gn_7_161' => 'lsa', 'Lsat_1_v5_gn_7_7041' => 'lsa', 'Lsat_1_v5_gn_9_33481' => 'lsa', 'Lsat_1_v5_gn_9_68260' => 'lsa', 'Manes.01G073100' => 'mes', 'Manes.01G266300' => 'mes', 'Manes.02G033300' => 'mes', 'Manes.05G017900' => 'mes', 'Manes.05G046100' => 'mes', 'Manes.08G080900' => 'mes', 'Manes.10G049400' => 'mes', 'Mapoly0009s0186' => 'mpo', 'Mapoly0036s0118' => 'mpo', 'Mapoly0101s0046' => 'mpo', 'MBI04_g30218_MAGBIO' => 'mbi', 'MBI04_g35564_MAGBIO' => 'mbi', 'MBI12_g34011_MAGBIO' => 'mbi', 'MBI14_g04655_MAGBIO' => 'mbi', 'MCO07G653' => 'mco', 'MCO10G173' => 'mco', 'MD01G1087100' => 'mdo', 'MD01G1104200' => 'mdo', 'MD02G1205100' => 'mdo', 'MD04G1079200' => 'mdo', 'MD04G1131400' => 'mdo', 'MD07G1121600' => 'mdo', 'MD07G1157300' => 'mdo', 'MD07G1171000' => 'mdo', 'MD12G1144500' => 'mdo', 'Medtr1g094610' => 'mtr', 'Medtr4g021795' => 'mtr', 'Medtr4g023760' => 'mtr', 'Medtr7g118050' => 'mtr', 'MELO3C005582.2' => 'cme', 'MELO3C005989.2' => 'cme', 'MELO3C006192.2' => 'cme', 'MELO3C009248.2' => 'cme', 'MELO3C019817.2' => 'cme', 'Migut.B01625' => 'egut', 'Migut.B01915' => 'egut', 'Migut.F01721' => 'egut', 'Migut.J00314' => 'egut', 'MSTRG.20742' => 'ama', 'MSTRG.8134' => 'ama', 'Nitab4.5_0000096g0010' => 'nta', 'Nitab4.5_0000202g0030' => 'nta', 'Nitab4.5_0000216g0370' => 'nta', 'Nitab4.5_0000457g0230' => 'nta', 'Nitab4.5_0001702g0170' => 'nta', 'Nitab4.5_0003607g0010' => 'nta', 'Nitab4.5_0004917g0020' => 'nta', 'Nitab4.5_0007059g0010' => 'nta', 'Nitab4.5_0007184g0010' => 'nta', 'Nitab4.5_0007346g0020' => 'nta', 'Nn1g00410' => 'nnu', 'Nn1g01252' => 'nnu', 'Nn2g11168' => 'nnu', 'Nn2g13403' => 'nnu', 'Nn2g13760' => 'nnu', 'Nn4g26380' => 'nnu', 'Oeu000806.2' => 'oeu', 'Oeu005788.1' => 'oeu', 'Oeu006900.3' => 'oeu', 'Oeu007797.1' => 'oeu', 'Oeu011932.1' => 'oeu', 'Oeu022739.1' => 'oeu', 'Oeu037918.1' => 'oeu', 'Oeu055490.2' => 'oeu', 'Os01g0844400' => 'osa', 'Os02g0819100' => 'osa', 'Os03g0804300' => 'osa', 'Os05g0458000' => 'osa', 'Os07g0467800' => 'osa', 'Os12g0602200' => 'osa', 'Peaxi162Scf00013g03444' => 'pax', 'Peaxi162Scf00094g01120' => 'pax', 'Peaxi162Scf00191g01211' => 'pax', 'Peaxi162Scf00238g01110' => 'pax', 'Peaxi162Scf00330g00719' => 'pax', 'Peaxi162Scf00627g00018' => 'pax', 'PGR031G2686' => 'pgr', 'PGR042G0809' => 'pgr', 'PGR142G0193' => 'pgr', 'PGSC0003DMG400011066' => 'stu', 'PGSC0003DMG400012041' => 'stu', 'PGSC0003DMG400013678' => 'stu', 'PGSC0003DMG400023477' => 'stu', 'PGSC0003DMG400025956' => 'stu', 'PGSC0003DMG401019151' => 'stu', 'Phvul.006G116400' => 'pvu', 'Phvul.007G097300' => 'pvu', 'Phvul.010G015000' => 'pvu', 'Phvul.010G083900' => 'pvu', 'Potri.001G117100' => 'ptr', 'Potri.002G147300' => 'ptr', 'Potri.003G115600' => 'ptr', 'Potri.006G087400' => 'ptr', 'Potri.010G226100' => 'ptr', 'Potri.014G069200' => 'ptr', 'Potri.014G104000' => 'ptr', 'Potri.016G100200' => 'ptr', 'Pp3c10_20450' => 'ppa', 'Pp3c1_42400' => 'ppa', 'Pp3c3_24390' => 'ppa', 'Pp3c3_2860' => 'ppa', 'PRCOL_00003193' => 'pco', 'Prupe.2G144500' => 'ppe', 'Prupe.2G195700' => 'ppe', 'Prupe.2G209800' => 'ppe', 'Prupe.5G080000' => 'ppe', 'Prupe.6G257900' => 'ppe', 'Psat3g001160' => 'psa', 'Psat6g181880' => 'psa', 'Psat7g233720' => 'psa', 'PSO063G7587' => 'pso', 'PSO339G2145' => 'pso', 'PSO339G3369' => 'pso', 'PSO478G2747' => 'pso', 'PSO513G0140' => 'pso', 'PSO782G1614' => 'pso', 'PSO782G4889' => 'pso', 'PSO782G5485' => 'pso', 'PSO801G0241' => 'pso', 'QL07p048854' => 'qlo', 'QL08p046745' => 'qlo', 'QL08p052606' => 'qlo', 'QL08p053414' => 'qlo', 'QL08p054868' => 'qlo', 'RcHm_v2.0_Chr1g0350251' => 'rch', 'RcHm_v2.0_Chr1g0360851' => 'rch', 'RcHm_v2.0_Chr1g0362791' => 'rch', 'RcHm_v2.0_Chr3g0466281' => 'rch', 'RcHm_v2.0_Chr7g0201481' => 'rch', 'Rhsim01G0148600' => 'rsi', 'Rhsim05G0194400' => 'rsi', 'Rhsim07G0000700' => 'rsi', 'Rhsim07G0000800' => 'rsi', 'Rhsim07G0027900' => 'rsi', 'Rhsim09G0149500' => 'rsi', 'RhsimUnG0186900' => 'rsi', 'Sabra01G0089900' => 'sbr', 'Sabra02G0114700' => 'sbr', 'Sabra02G0116300' => 'sbr', 'Sabra03G0080100' => 'sbr', 'Sabra08G0024300' => 'sbr', 'Sabra10G0174300' => 'sbr', 'Sabra14G0048900' => 'sbr', 'Sabra14G0076500' => 'sbr', 'SalBow5G2513' => 'sbo', 'Sc01g0002300' => 'sci', 'Sc01g0004450' => 'sci', 'Sc06g0001680' => 'sci', 'Sc23g0003580' => 'sci', 'Sed0000913' => 'sed', 'Sed0001655' => 'sed', 'Sed0007745' => 'sed', 'Sed0010951' => 'sed', 'Sed0017599' => 'sed', 'Sed0021405' => 'sed', 'Sed0022810' => 'sed', 'SEGI_07099' => 'sgi', 'SEGI_11931' => 'sgi', 'SEGI_13187' => 'sgi', 'SEGI_29958' => 'sgi', 'SEGI_36351' => 'sgi', 'SGA_v2.0_scaffold126G33770' => 'sas', 'SGA_v2.0_scaffold153G37003' => 'sas', 'SGA_v2.0_scaffold2G01359' => 'sas', 'SGA_v2.0_scaffold5G03064' => 'sas', 'SGA_v2.0_scaffold95G28903' => 'sas', 'SHI12701' => 'shi', 'SHI26410' => 'shi', 'SHI38997' => 'shi', 'SHI53759' => 'shi', 'SHI53886' => 'shi', 'SHI54714' => 'shi', 'SMO011G0041' => 'smo', 'SMO146G0251' => 'smo', 'SMO160G0004' => 'smo', 'SMO174G0057' => 'smo', 'SMO244G0089' => 'smo', 'SMO296G0011' => 'smo', 'Solyc01g091280.3' => 'sly', 'Solyc05g047610.3' => 'sly', 'Solyc05g047640.3' => 'sly', 'Solyc05g055630.3' => 'sly', 'Solyc10g018160.2' => 'sly', 'Solyc10g084820.2' => 'sly', 'Solyc10g086565.2' => 'sly', 'Sopen01g037030' => 'spe', 'Sopen05g027920' => 'spe', 'Sopen05g034070' => 'spe', 'Sopen10g007260' => 'spe', 'Sopen10g034260' => 'spe', 'Sopen10g035950' => 'spe', 'Sp3g07710' => 'spa', 'Sp4g27420' => 'spa', 'Sp5g02450' => 'spa', 'Sp6g01280' => 'spa', 'Sp6g38480' => 'spa', 'Sp7g20780' => 'spa', 'TAR374G1413' => 'tar', 'TAR623G1777' => 'tar', 'TAR629G2370' => 'tar', 'TAR633G1759' => 'tar', 'TAR636G3387' => 'tar', 'THA.LOC104802447' => 'tha', 'THA.LOC104813916' => 'tha', 'THA.LOC104816423' => 'tha', 'THA.LOC104817246' => 'tha', 'THA.LOC104825895' => 'tha', 'Thecc.01G335200' => 'tca', 'Thecc.01G377400' => 'tca', 'Thecc.03G262200' => 'tca', 'Thecc.05G036800' => 'tca', 'Thecc.10G080500' => 'tca', 'Thecc.10G080800' => 'tca', 'Thhalv10001560m.g' => 'esa', 'Thhalv10006120m.g' => 'esa', 'Thhalv10014375m.g' => 'esa', 'Thhalv10021264m.g' => 'esa', 'Thhalv10028856m.g' => 'esa', 'TPR.G1914' => 'tpr', 'TPR.G4757' => 'tpr', 'TPR.G5595' => 'tpr', 'TWI14G0952' => 'twi', 'TWI14G1307' => 'twi', 'TWI38G2143' => 'twi', 'TWI59G0826' => 'twi', 'TWI77G0527' => 'twi', 'TWI81G0150' => 'twi', 'unitig_21.g21018' => 'ugi', 'unitig_26.g9725' => 'ugi', 'unitig_744.g24653' => 'ugi', 'unitig_749.g13778' => 'ugi', 'unitig_899.g15035' => 'ugi', 'vmacro04296' => 'vma', 'vmacro04852' => 'vma', 'vmacro13404' => 'vma', 'vmacro20169' => 'vma', 'vmacro21014' => 'vma', 'VMungo0331G0237' => 'vmu', 'VMungo0331G0706' => 'vmu', 'VMungo0331G1361' => 'vmu', 'VMungo0331G1489' => 'vmu', 'VMungo0540G1037' => 'vmu', 'VMungo0720G2487' => 'vmu', 'VMungo0720G2721' => 'vmu', 'Zm00001eb086860' => 'zma', 'Zm00001eb104760' => 'zma', 'Zm00001eb148220' => 'zma', 'Zm00001eb259030' => 'zma', 'Zm00001eb289590' => 'zma', 'Zm00001eb420150' => 'zma' ) $gf_id = 'HOM05D000968' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000968' ) $data_identifier = 'HOM05D000968' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 19, 'bol' => (int) 9, 'bra' => (int) 12, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 5, 'ccan' => (int) 7, 'cde' => (int) 5, 'cfa' => (int) 8, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 4, 'dca' => (int) 5, 'din' => (int) 5, 'dzi' => (int) 12, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 25, 'fve' => (int) 5, 'gma' => (int) 9, 'ghi' => (int) 18, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 7, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 5, 'sun' => (int) 2, 'lal' => (int) 9, 'lja' => (int) 5, 'lonja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 9, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 2, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 3, 'stu' => (int) 6, 'pvu' => (int) 4, 'ptr' => (int) 8, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 3, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 1, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 5, 'sas' => (int) 5, 'shi' => (int) 6, 'smo' => (int) 6, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 3, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420150' $species_info = array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ) $local_species = 'vpl' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000968', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p31690' => 'bna', 'A03p36040' => 'bna', 'A03p53730' => 'bna', 'A04p01410' => 'bna', 'A05p05420' => 'bna', 'A05p39630' => 'bna', 'A05p39640' => 'bna', 'A09p00970' => 'bna', 'A09p53060' => 'bna', 'A10p31890' => 'bna', 'Aa31LG10G15040' => 'aar', 'Aa31LG1G21090' => 'aar', 'Aa31LG1G26900' => 'aar', 'Aa31LG3G1820' => 'aar', 'Aa31LG5G1100' => 'aar', 'Aa31LG6G4740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2265' => 'aag', 'Actinidia07998' => 'ach', 'Actinidia11266' => 'ach', 'Actinidia12682' => 'ach', 'Actinidia26479' => 'ach', 'Actinidia31406' => 'ach', 'Actinidia32437' => 'ach', 'Actinidia38862' => 'ach', 'Ah.05g174230' => 'amhyb', 'Ah.05g179070' => 'amhyb', 'Ah.05g179090' => 'amhyb', 'Ah.12g059950' => 'amhyb', 'AL3G20480' => 'aly', 'AL4G44520' => 'aly', 'AL5G43110' => 'aly', 'AL6G13890' => 'aly', 'AL6G52620' => 'aly', 'AL7G30830' => 'aly', 'Aqoxy1G00899' => 'aox', 'Aqoxy5G04333' => 'aox', 'Aqoxy7G00641' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3IZ0NN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4EF6AW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W9P8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79GA3M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C43NQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFCU6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G95YVJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCHK29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LU1UG8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX91RN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGB4B1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8DA0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9H7JI' => 'arhy', 'AT3G09320' => 'ath', 'AT3G60800' => 'ath', 'AT4G00840' => 'ath', 'AT4G22750' => 'ath', 'AT5G04270' => 'ath', 'ATR0090G003' => 'atr', 'ATR0559G349' => 'atr', 'ATR0680G261' => 'atr', 'ATR0810G048' => 'atr', 'Atru.chr12.831' => 'acertr', 'Atru.chr5.303' => 'acertr', 'Atru.chr5.748' => 'acertr', 'Atru.chr8.1999' => 'acertr', 'Atru.chr9.1436' => 'acertr', 'AUR62004211' => 'cqu', 'AUR62004548' => 'cqu', 'AUR62013637' => 'cqu', 'AUR62022662' => 'cqu', 'AUR62025777' => 'cqu', 'AUR62042386' => 'cqu', 'BcaB01g02310' => 'bca', 'BcaB01g06062' => 'bca', 'BcaB02g08975' => 'bca', 'BcaB02g08980' => 'bca', 'BcaC01g04228' => 'bca', 'BcaC01g06830' => 'bca', 'BcaC02g10186' => 'bca', 'BcaC02g12214' => 'bca', 'BcaC04g24101' => 'bca', 'BcaC05g29520' => 'bca', 'BcaC05g29661' => 'bca', 'BcaC06g32130' => 'bca', 'BcaC06g32131' => 'bca', 'BcaC07g40601' => 'bca', 'BcaC07g42641' => 'bca', 'BcaNung01038' => 'bca', 'BcaNung01676' => 'bca', 'BcaNung02480' => 'bca', 'BcaNung07376' => 'bca', 'BolC3t16146H' => 'bol', 'BolC3t16637H' => 'bol', 'BolC4t22257H' => 'bol', 'BolC4t24728H' => 'bol', 'BolC5t34517H' => 'bol', 'BolC7t45703H' => 'bol', 'BolC8t51166H' => 'bol', 'BolC9t53038H' => 'bol', 'BolC9t60000H' => 'bol', 'BraA01t01345Z' => 'bra', 'BraA01t01346Z' => 'bra', 'BraA01t01348Z' => 'bra', 'BraA03t12347Z' => 'bra', 'BraA03t12775Z' => 'bra', 'BraA03t14439Z' => 'bra', 'BraA04t15860Z' => 'bra', 'BraA05t19511Z' => 'bra', 'BraA05t22746Z' => 'bra', 'BraA09t35767Z' => 'bra', 'BraA09t40732Z' => 'bra', 'BraA10t45233Z' => 'bra', 'C03p38720' => 'bna', 'C03p43680' => 'bna', 'C04p06350' => 'bna', 'C04p31800' => 'bna', 'C05p58680' => 'bna', 'C07p52110' => 'bna', 'C08p35760' => 'bna', 'C09p01050' => 'bna', 'C09p72600' => 'bna', 'CAN.G106.2' => 'can', 'CAN.G1482.1' => 'can', 'CAN.G324.12' => 'can', 'CAN.G388.20' => 'can', 'CAN.G412.7' => 'can', 'CAN.G694.32' => 'can', 'CAN.G92.12' => 'can', 'CANSAT11G2353' => 'cansat', 'CANSAT21G1398' => 'cansat', 'CANSAT56G2456' => 'cansat', 'CANSAT56G3031' => 'cansat', 'CANSAT56G4539' => 'cansat', 'CARHR083680' => 'chi', 'CARHR171190' => 'chi', 'CARHR209010' => 'chi', 'CARHR229680' => 'chi', 'CARHR249490' => 'chi', 'Carub.0003s0844' => 'cru', 'Carub.0005s2755' => 'cru', 'Carub.0006s0322' => 'cru', 'Carub.0006s3586' => 'cru', 'Carub.0007s1855' => 'cru', 'Ca_07808_v3' => 'car', 'Ca_09535_v3' => 'car', 'Ca_10548_v3' => 'car', 'Ca_19913_v3' => 'car', 'Ca_19916_v3' => 'car', 'Ca_19975_v3' => 'car', 'CBR_g22876' => 'cbr', 'CBR_g22879' => 'cbr', 'CBR_g38491' => 'cbr', 'CBR_g54185' => 'cbr', 'CBR_g54190' => 'cbr', 'Cc02_g11020' => 'ccan', 'Cc02_g23920' => 'ccan', 'Cc02_g39860' => 'ccan', 'Cc02_g39870' => 'ccan', 'Cc03_g06760' => 'ccan', 'Cc06_g02450' => 'ccan', 'Cc09_g09450' => 'ccan', 'CDE02G1959' => 'cde', 'CDE04G0600' => 'cde', 'CDE07G1996' => 'cde', 'CDE07G2078' => 'cde', 'CDE11G0611' => 'cde', 'Cfa001683' => 'cfa', 'Cfa001734' => 'cfa', 'Cfa001737' => 'cfa', 'Cfa003751' => 'cfa', 'Cfa012019' => 'cfa', 'Cfa017353' => 'cfa', 'Cfa017732' => 'cfa', 'Cfa022464' => 'cfa', 'Ciclev10012400m.g' => 'ccl', 'Ciclev10021242m.g' => 'ccl', 'Ciclev10021302m.g' => 'ccl', 'Ciclev10021463m.g' => 'ccl', 'Ciclev10032359m.g' => 'ccl', 'CiPaw.01G081000' => 'cil', 'CiPaw.01G262500' => 'cil', 'CiPaw.01G269800' => 'cil', 'CiPaw.02G168400' => 'cil', 'CiPaw.05G119500' => 'cil', 'CiPaw.11G147300' => 'cil', 'ClCG01G003630' => 'cla', 'ClCG05G000510' => 'cla', 'ClCG05G002300' => 'cla', 'ClCG08G007650' => 'cla', 'ClCG10G021250' => 'cla', 'COL.COLO4_06218' => 'col', 'COL.COLO4_12538' => 'col', 'COL.COLO4_14775' => 'col', 'COL.COLO4_23875' => 'col', 'Cpa.g.sc141.16' => 'cpa', 'Cpa.g.sc169.16' => 'cpa', 'Cpa.g.sc244.4' => 'cpa', 'Cpa.g.sc244.5' => 'cpa', 'Cpa.g.sc29.87' => 'cpa', 'Cpa.g.sc53.115' => 'cpa', 'Cre03.g207502' => 'cre', 'Cre06.g277000' => 'cre', 'Cre09.g394050' => 'cre', 'CsaV3_3G007680' => 'csa', 'CsaV3_3G009710' => 'csa', 'CsaV3_3G034790' => 'csa', 'CsaV3_5G003750' => 'csa', 'CsaV3_6G036620' => 'csa', 'CSS0002288' => 'camsi', 'CSS0011250' => 'camsi', 'CSS0021619' => 'camsi', 'CSS0046701' => 'camsi', 'DCAR_006420' => 'dca', 'DCAR_006865' => 'dca', 'DCAR_008558' => 'dca', 'DCAR_028754' => 'dca', 'DCAR_028755' => 'dca', 'Dinv31218' => 'din', 'Dinv32371' => 'din', 'Dinv34250' => 'din', 'Dinv37156' => 'din', 'Dinv43704' => 'din', 'Duzib093G1811' => 'dzi', 'Duzib106G1622' => 'dzi', 'Duzib114G0504' => 'dzi', 'Duzib128G0338' => 'dzi', 'Duzib128G1577' => 'dzi', 'Duzib133G0104' => 'dzi', 'Duzib133G1080' => 'dzi', 'Duzib138G0324' => 'dzi', 'Duzib138G0394' => 'dzi', 'Duzib205G0122' => 'dzi', 'Duzib268G1020' => 'dzi', 'Duzib268G1359' => 'dzi', 'ECA232G3929' => 'eca', 'ECA236G2210' => 'eca', 'ECA236G2287' => 'eca', 'ECA240G4568' => 'eca', 'ECA247G0894' => 'eca', 'EL10Ac1g00200' => 'bvu', 'EL10Ac1g00886' => 'bvu', 'EL10As1g23091' => 'bvu', 'EL10As1g23092' => 'bvu', 'Eucgr.A01284' => 'egr', 'Eucgr.A01285' => 'egr', 'Eucgr.D02456' => 'egr', 'Eucgr.E00018' => 'egr', 'Eucgr.E01439' => 'egr', 'Eucgr.G02859' => 'egr', 'FAN01G0168' => 'fan', 'FAN01G0453' => 'fan', 'FAN01G2761' => 'fan', 'FAN02G1239' => 'fan', 'FAN03G0645' => 'fan', 'FAN03G2707' => 'fan', 'FAN03G2978' => 'fan', 'FAN04G0227' => 'fan', 'FAN06G0091' => 'fan', 'FAN06G1418' => 'fan', 'FAN06G1512' => 'fan', 'FAN06G1986' => 'fan', 'FAN06G2905' => 'fan', 'FAN06G4325' => 'fan', 'FAN08G0033' => 'fan', 'FAN09G0642' => 'fan', 'FAN10G1763' => 'fan', 'FAN10G2026' => 'fan', 'FAN10G2513' => 'fan', 'FAN10G3402' => 'fan', 'FAN10G3564' => 'fan', 'FAN10G3987' => 'fan', 'FAN13G1490' => 'fan', 'FAN14G5857' => 'fan', 'FAN18G1188' => 'fan', 'FvH4_5g00750' => 'fve', 'FvH4_6g13410' => 'fve', 'FvH4_7g11740' => 'fve', 'FvH4_7g17410' => 'fve', 'FvH4_7g18860' => 'fve', 'Glyma.01G099100' => 'gma', 'Glyma.01G142300' => 'gma', 'Glyma.03G025500' => 'gma', 'Glyma.03G069700' => 'gma', 'Glyma.03G260000' => 'gma', 'Glyma.09G269800' => 'gma', 'Glyma.10G208700' => 'gma', 'Glyma.18G220400' => 'gma', 'Glyma.20G182000' => 'gma', 'Gohir.A01G221726' => 'ghi', 'Gohir.A07G134600' => 'ghi', 'Gohir.A07G146000' => 'ghi', 'Gohir.A08G173900' => 'ghi', 'Gohir.A09G194900' => 'ghi', 'Gohir.A10G204100' => 'ghi', 'Gohir.A11G080600' => 'ghi', 'Gohir.A11G327500' => 'ghi', 'Gohir.A12G101800' => 'ghi', 'Gohir.D01G211200' => 'ghi', 'Gohir.D07G139200' => 'ghi', 'Gohir.D07G152100' => 'ghi', 'Gohir.D08G192600' => 'ghi', 'Gohir.D09G189200' => 'ghi', 'Gohir.D10G212000' => 'ghi', 'Gohir.D11G085200' => 'ghi', 'Gohir.D11G346400' => 'ghi', 'Gohir.D12G104800' => 'ghi', 'Gorai.001G151300' => 'gra', 'Gorai.001G174100' => 'gra', 'Gorai.002G257000' => 'gra', 'Gorai.004G202600' => 'gra', 'Gorai.007G090900' => 'gra', 'Gorai.007G376700' => 'gra', 'Gorai.008G114100' => 'gra', 'Gorai.011G237900' => 'gra', 'GSVIVG01005450001' => 'vvi', 'GSVIVG01016232001' => 'vvi', 'GSVIVG01026157001' => 'vvi', 'GSVIVG01027419001' => 'vvi', 'GSVIVG01027631001' => 'vvi', 'GSVIVG01034143001' => 'vvi', 'HanXRQChr03g0093921' => 'han', 'HanXRQChr04g0120001' => 'han', 'HanXRQChr04g0122561' => 'han', 'HanXRQChr09g0246851' => 'han', 'HanXRQChr10g0293311' => 'han', 'HanXRQChr13g0425231' => 'han', 'HanXRQChr16g0532571' => 'han', 'Haze_09050' => 'cav', 'Haze_15715' => 'cav', 'Haze_15716' => 'cav', 'Haze_16803' => 'cav', 'Haze_16850' => 'cav', 'Hma1.2p1_0301F.1_g118655' => 'hma', 'Hma1.2p1_0309F.1_g120590' => 'hma', 'Hma1.2p1_0936F.1_g238900' => 'hma', 'Hma1.2p1_3552F.1_g336740' => 'hma', 'HPP92_003520' => 'vpl', 'HPP92_006628' => 'vpl', 'HPP92_006645' => 'vpl', 'HPP92_014669' => 'vpl', 'HPP92_015077' => 'vpl', 'Hund16742' => 'sun', 'Hund17022' => 'sun', 'Lalb_Chr02g0152131' => 'lal', 'Lalb_Chr05g0225371' => 'lal', 'Lalb_Chr07g0189841' => 'lal', 'Lalb_Chr07g0192961' => 'lal', 'Lalb_Chr12g0208221' => 'lal', 'Lalb_Chr13g0291211' => 'lal', 'Lalb_Chr13g0291781' => 'lal', 'Lalb_Chr18g0044651' => 'lal', 'Lalb_Chr21g0313731' => 'lal', 'Lj1g0022533' => 'lja', 'Lj2A18T50' => 'lonja', 'Lj2A92G93' => 'lonja', 'Lj3A965T73' => 'lonja', 'Lj3g0000673' => 'lja', 'Lj3g0002666' => 'lja', 'Lj4g0016985' => 'lja', 'Lj5g0003625' => 'lja', 'Lj7A529G36' => 'lonja', 'Lj9A569T49' => 'lonja', 'Lj9A604T63' => 'lonja', 'Lsat_1_v5_gn_3_132060' => 'lsa', 'Lsat_1_v5_gn_4_68941' => 'lsa', 'Lsat_1_v5_gn_5_95580' => 'lsa', 'Lsat_1_v5_gn_7_161' => 'lsa', 'Lsat_1_v5_gn_7_7041' => 'lsa', 'Lsat_1_v5_gn_9_33481' => 'lsa', 'Lsat_1_v5_gn_9_68260' => 'lsa', 'Manes.01G073100' => 'mes', 'Manes.01G266300' => 'mes', 'Manes.02G033300' => 'mes', 'Manes.05G017900' => 'mes', 'Manes.05G046100' => 'mes', 'Manes.08G080900' => 'mes', 'Manes.10G049400' => 'mes', 'Mapoly0009s0186' => 'mpo', 'Mapoly0036s0118' => 'mpo', 'Mapoly0101s0046' => 'mpo', 'MBI04_g30218_MAGBIO' => 'mbi', 'MBI04_g35564_MAGBIO' => 'mbi', 'MBI12_g34011_MAGBIO' => 'mbi', 'MBI14_g04655_MAGBIO' => 'mbi', 'MCO07G653' => 'mco', 'MCO10G173' => 'mco', 'MD01G1087100' => 'mdo', 'MD01G1104200' => 'mdo', 'MD02G1205100' => 'mdo', 'MD04G1079200' => 'mdo', 'MD04G1131400' => 'mdo', 'MD07G1121600' => 'mdo', 'MD07G1157300' => 'mdo', 'MD07G1171000' => 'mdo', 'MD12G1144500' => 'mdo', 'Medtr1g094610' => 'mtr', 'Medtr4g021795' => 'mtr', 'Medtr4g023760' => 'mtr', 'Medtr7g118050' => 'mtr', 'MELO3C005582.2' => 'cme', 'MELO3C005989.2' => 'cme', 'MELO3C006192.2' => 'cme', 'MELO3C009248.2' => 'cme', 'MELO3C019817.2' => 'cme', 'Migut.B01625' => 'egut', 'Migut.B01915' => 'egut', 'Migut.F01721' => 'egut', 'Migut.J00314' => 'egut', 'MSTRG.20742' => 'ama', 'MSTRG.8134' => 'ama', 'Nitab4.5_0000096g0010' => 'nta', 'Nitab4.5_0000202g0030' => 'nta', 'Nitab4.5_0000216g0370' => 'nta', 'Nitab4.5_0000457g0230' => 'nta', 'Nitab4.5_0001702g0170' => 'nta', 'Nitab4.5_0003607g0010' => 'nta', 'Nitab4.5_0004917g0020' => 'nta', 'Nitab4.5_0007059g0010' => 'nta', 'Nitab4.5_0007184g0010' => 'nta', 'Nitab4.5_0007346g0020' => 'nta', 'Nn1g00410' => 'nnu', 'Nn1g01252' => 'nnu', 'Nn2g11168' => 'nnu', 'Nn2g13403' => 'nnu', 'Nn2g13760' => 'nnu', 'Nn4g26380' => 'nnu', 'Oeu000806.2' => 'oeu', 'Oeu005788.1' => 'oeu', 'Oeu006900.3' => 'oeu', 'Oeu007797.1' => 'oeu', 'Oeu011932.1' => 'oeu', 'Oeu022739.1' => 'oeu', 'Oeu037918.1' => 'oeu', 'Oeu055490.2' => 'oeu', 'Os01g0844400' => 'osa', 'Os02g0819100' => 'osa', 'Os03g0804300' => 'osa', 'Os05g0458000' => 'osa', 'Os07g0467800' => 'osa', 'Os12g0602200' => 'osa', 'Peaxi162Scf00013g03444' => 'pax', 'Peaxi162Scf00094g01120' => 'pax', 'Peaxi162Scf00191g01211' => 'pax', 'Peaxi162Scf00238g01110' => 'pax', 'Peaxi162Scf00330g00719' => 'pax', 'Peaxi162Scf00627g00018' => 'pax', 'PGR031G2686' => 'pgr', 'PGR042G0809' => 'pgr', 'PGR142G0193' => 'pgr', 'PGSC0003DMG400011066' => 'stu', 'PGSC0003DMG400012041' => 'stu', 'PGSC0003DMG400013678' => 'stu', 'PGSC0003DMG400023477' => 'stu', 'PGSC0003DMG400025956' => 'stu', 'PGSC0003DMG401019151' => 'stu', 'Phvul.006G116400' => 'pvu', 'Phvul.007G097300' => 'pvu', 'Phvul.010G015000' => 'pvu', 'Phvul.010G083900' => 'pvu', 'Potri.001G117100' => 'ptr', 'Potri.002G147300' => 'ptr', 'Potri.003G115600' => 'ptr', 'Potri.006G087400' => 'ptr', 'Potri.010G226100' => 'ptr', 'Potri.014G069200' => 'ptr', 'Potri.014G104000' => 'ptr', 'Potri.016G100200' => 'ptr', 'Pp3c10_20450' => 'ppa', 'Pp3c1_42400' => 'ppa', 'Pp3c3_24390' => 'ppa', 'Pp3c3_2860' => 'ppa', 'PRCOL_00003193' => 'pco', 'Prupe.2G144500' => 'ppe', 'Prupe.2G195700' => 'ppe', 'Prupe.2G209800' => 'ppe', 'Prupe.5G080000' => 'ppe', 'Prupe.6G257900' => 'ppe', 'Psat3g001160' => 'psa', 'Psat6g181880' => 'psa', 'Psat7g233720' => 'psa', 'PSO063G7587' => 'pso', 'PSO339G2145' => 'pso', 'PSO339G3369' => 'pso', 'PSO478G2747' => 'pso', 'PSO513G0140' => 'pso', 'PSO782G1614' => 'pso', 'PSO782G4889' => 'pso', 'PSO782G5485' => 'pso', 'PSO801G0241' => 'pso', 'QL07p048854' => 'qlo', 'QL08p046745' => 'qlo', 'QL08p052606' => 'qlo', 'QL08p053414' => 'qlo', 'QL08p054868' => 'qlo', 'RcHm_v2.0_Chr1g0350251' => 'rch', 'RcHm_v2.0_Chr1g0360851' => 'rch', 'RcHm_v2.0_Chr1g0362791' => 'rch', 'RcHm_v2.0_Chr3g0466281' => 'rch', 'RcHm_v2.0_Chr7g0201481' => 'rch', 'Rhsim01G0148600' => 'rsi', 'Rhsim05G0194400' => 'rsi', 'Rhsim07G0000700' => 'rsi', 'Rhsim07G0000800' => 'rsi', 'Rhsim07G0027900' => 'rsi', 'Rhsim09G0149500' => 'rsi', 'RhsimUnG0186900' => 'rsi', 'Sabra01G0089900' => 'sbr', 'Sabra02G0114700' => 'sbr', 'Sabra02G0116300' => 'sbr', 'Sabra03G0080100' => 'sbr', 'Sabra08G0024300' => 'sbr', 'Sabra10G0174300' => 'sbr', 'Sabra14G0048900' => 'sbr', 'Sabra14G0076500' => 'sbr', 'SalBow5G2513' => 'sbo', 'Sc01g0002300' => 'sci', 'Sc01g0004450' => 'sci', 'Sc06g0001680' => 'sci', 'Sc23g0003580' => 'sci', 'Sed0000913' => 'sed', 'Sed0001655' => 'sed', 'Sed0007745' => 'sed', 'Sed0010951' => 'sed', 'Sed0017599' => 'sed', 'Sed0021405' => 'sed', 'Sed0022810' => 'sed', 'SEGI_07099' => 'sgi', 'SEGI_11931' => 'sgi', 'SEGI_13187' => 'sgi', 'SEGI_29958' => 'sgi', 'SEGI_36351' => 'sgi', 'SGA_v2.0_scaffold126G33770' => 'sas', 'SGA_v2.0_scaffold153G37003' => 'sas', 'SGA_v2.0_scaffold2G01359' => 'sas', 'SGA_v2.0_scaffold5G03064' => 'sas', 'SGA_v2.0_scaffold95G28903' => 'sas', 'SHI12701' => 'shi', 'SHI26410' => 'shi', 'SHI38997' => 'shi', 'SHI53759' => 'shi', 'SHI53886' => 'shi', 'SHI54714' => 'shi', 'SMO011G0041' => 'smo', 'SMO146G0251' => 'smo', 'SMO160G0004' => 'smo', 'SMO174G0057' => 'smo', 'SMO244G0089' => 'smo', 'SMO296G0011' => 'smo', 'Solyc01g091280.3' => 'sly', 'Solyc05g047610.3' => 'sly', 'Solyc05g047640.3' => 'sly', 'Solyc05g055630.3' => 'sly', 'Solyc10g018160.2' => 'sly', 'Solyc10g084820.2' => 'sly', 'Solyc10g086565.2' => 'sly', 'Sopen01g037030' => 'spe', 'Sopen05g027920' => 'spe', 'Sopen05g034070' => 'spe', 'Sopen10g007260' => 'spe', 'Sopen10g034260' => 'spe', 'Sopen10g035950' => 'spe', 'Sp3g07710' => 'spa', 'Sp4g27420' => 'spa', 'Sp5g02450' => 'spa', 'Sp6g01280' => 'spa', 'Sp6g38480' => 'spa', 'Sp7g20780' => 'spa', 'TAR374G1413' => 'tar', 'TAR623G1777' => 'tar', 'TAR629G2370' => 'tar', 'TAR633G1759' => 'tar', 'TAR636G3387' => 'tar', 'THA.LOC104802447' => 'tha', 'THA.LOC104813916' => 'tha', 'THA.LOC104816423' => 'tha', 'THA.LOC104817246' => 'tha', 'THA.LOC104825895' => 'tha', 'Thecc.01G335200' => 'tca', 'Thecc.01G377400' => 'tca', 'Thecc.03G262200' => 'tca', 'Thecc.05G036800' => 'tca', 'Thecc.10G080500' => 'tca', 'Thecc.10G080800' => 'tca', 'Thhalv10001560m.g' => 'esa', 'Thhalv10006120m.g' => 'esa', 'Thhalv10014375m.g' => 'esa', 'Thhalv10021264m.g' => 'esa', 'Thhalv10028856m.g' => 'esa', 'TPR.G1914' => 'tpr', 'TPR.G4757' => 'tpr', 'TPR.G5595' => 'tpr', 'TWI14G0952' => 'twi', 'TWI14G1307' => 'twi', 'TWI38G2143' => 'twi', 'TWI59G0826' => 'twi', 'TWI77G0527' => 'twi', 'TWI81G0150' => 'twi', 'unitig_21.g21018' => 'ugi', 'unitig_26.g9725' => 'ugi', 'unitig_744.g24653' => 'ugi', 'unitig_749.g13778' => 'ugi', 'unitig_899.g15035' => 'ugi', 'vmacro04296' => 'vma', 'vmacro04852' => 'vma', 'vmacro13404' => 'vma', 'vmacro20169' => 'vma', 'vmacro21014' => 'vma', 'VMungo0331G0237' => 'vmu', 'VMungo0331G0706' => 'vmu', 'VMungo0331G1361' => 'vmu', 'VMungo0331G1489' => 'vmu', 'VMungo0540G1037' => 'vmu', 'VMungo0720G2487' => 'vmu', 'VMungo0720G2721' => 'vmu', 'Zm00001eb086860' => 'zma', 'Zm00001eb104760' => 'zma', 'Zm00001eb148220' => 'zma', 'Zm00001eb259030' => 'zma', 'Zm00001eb289590' => 'zma', 'Zm00001eb420150' => 'zma' ), 'gf_id' => 'HOM05D000968', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000968' ), 'data_identifier' => 'HOM05D000968', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000968', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p31690' => 'bna', 'A03p36040' => 'bna', 'A03p53730' => 'bna', 'A04p01410' => 'bna', 'A05p05420' => 'bna', 'A05p39630' => 'bna', 'A05p39640' => 'bna', 'A09p00970' => 'bna', 'A09p53060' => 'bna', 'A10p31890' => 'bna', 'Aa31LG10G15040' => 'aar', 'Aa31LG1G21090' => 'aar', 'Aa31LG1G26900' => 'aar', 'Aa31LG3G1820' => 'aar', 'Aa31LG5G1100' => 'aar', 'Aa31LG6G4740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2265' => 'aag', 'Actinidia07998' => 'ach', 'Actinidia11266' => 'ach', 'Actinidia12682' => 'ach', 'Actinidia26479' => 'ach', 'Actinidia31406' => 'ach', 'Actinidia32437' => 'ach', 'Actinidia38862' => 'ach', 'Ah.05g174230' => 'amhyb', 'Ah.05g179070' => 'amhyb', 'Ah.05g179090' => 'amhyb', 'Ah.12g059950' => 'amhyb', 'AL3G20480' => 'aly', 'AL4G44520' => 'aly', 'AL5G43110' => 'aly', 'AL6G13890' => 'aly', 'AL6G52620' => 'aly', 'AL7G30830' => 'aly', 'Aqoxy1G00899' => 'aox', 'Aqoxy5G04333' => 'aox', 'Aqoxy7G00641' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3IZ0NN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4EF6AW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W9P8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79GA3M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C43NQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFCU6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G95YVJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCHK29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LU1UG8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX91RN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGB4B1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8DA0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9H7JI' => 'arhy', 'AT3G09320' => 'ath', 'AT3G60800' => 'ath', 'AT4G00840' => 'ath', 'AT4G22750' => 'ath', 'AT5G04270' => 'ath', 'ATR0090G003' => 'atr', 'ATR0559G349' => 'atr', 'ATR0680G261' => 'atr', 'ATR0810G048' => 'atr', 'Atru.chr12.831' => 'acertr', 'Atru.chr5.303' => 'acertr', 'Atru.chr5.748' => 'acertr', 'Atru.chr8.1999' => 'acertr', 'Atru.chr9.1436' => 'acertr', 'AUR62004211' => 'cqu', 'AUR62004548' => 'cqu', 'AUR62013637' => 'cqu', 'AUR62022662' => 'cqu', 'AUR62025777' => 'cqu', 'AUR62042386' => 'cqu', 'BcaB01g02310' => 'bca', 'BcaB01g06062' => 'bca', 'BcaB02g08975' => 'bca', 'BcaB02g08980' => 'bca', 'BcaC01g04228' => 'bca', 'BcaC01g06830' => 'bca', 'BcaC02g10186' => 'bca', 'BcaC02g12214' => 'bca', 'BcaC04g24101' => 'bca', 'BcaC05g29520' => 'bca', 'BcaC05g29661' => 'bca', 'BcaC06g32130' => 'bca', 'BcaC06g32131' => 'bca', 'BcaC07g40601' => 'bca', 'BcaC07g42641' => 'bca', 'BcaNung01038' => 'bca', 'BcaNung01676' => 'bca', 'BcaNung02480' => 'bca', 'BcaNung07376' => 'bca', 'BolC3t16146H' => 'bol', 'BolC3t16637H' => 'bol', 'BolC4t22257H' => 'bol', 'BolC4t24728H' => 'bol', 'BolC5t34517H' => 'bol', 'BolC7t45703H' => 'bol', 'BolC8t51166H' => 'bol', 'BolC9t53038H' => 'bol', 'BolC9t60000H' => 'bol', 'BraA01t01345Z' => 'bra', 'BraA01t01346Z' => 'bra', 'BraA01t01348Z' => 'bra', 'BraA03t12347Z' => 'bra', 'BraA03t12775Z' => 'bra', 'BraA03t14439Z' => 'bra', 'BraA04t15860Z' => 'bra', 'BraA05t19511Z' => 'bra', 'BraA05t22746Z' => 'bra', 'BraA09t35767Z' => 'bra', 'BraA09t40732Z' => 'bra', 'BraA10t45233Z' => 'bra', 'C03p38720' => 'bna', 'C03p43680' => 'bna', 'C04p06350' => 'bna', 'C04p31800' => 'bna', 'C05p58680' => 'bna', 'C07p52110' => 'bna', 'C08p35760' => 'bna', 'C09p01050' => 'bna', 'C09p72600' => 'bna', 'CAN.G106.2' => 'can', 'CAN.G1482.1' => 'can', 'CAN.G324.12' => 'can', 'CAN.G388.20' => 'can', 'CAN.G412.7' => 'can', 'CAN.G694.32' => 'can', 'CAN.G92.12' => 'can', 'CANSAT11G2353' => 'cansat', 'CANSAT21G1398' => 'cansat', 'CANSAT56G2456' => 'cansat', 'CANSAT56G3031' => 'cansat', 'CANSAT56G4539' => 'cansat', 'CARHR083680' => 'chi', 'CARHR171190' => 'chi', 'CARHR209010' => 'chi', 'CARHR229680' => 'chi', 'CARHR249490' => 'chi', 'Carub.0003s0844' => 'cru', 'Carub.0005s2755' => 'cru', 'Carub.0006s0322' => 'cru', 'Carub.0006s3586' => 'cru', 'Carub.0007s1855' => 'cru', 'Ca_07808_v3' => 'car', 'Ca_09535_v3' => 'car', 'Ca_10548_v3' => 'car', 'Ca_19913_v3' => 'car', 'Ca_19916_v3' => 'car', 'Ca_19975_v3' => 'car', 'CBR_g22876' => 'cbr', 'CBR_g22879' => 'cbr', 'CBR_g38491' => 'cbr', 'CBR_g54185' => 'cbr', 'CBR_g54190' => 'cbr', 'Cc02_g11020' => 'ccan', 'Cc02_g23920' => 'ccan', 'Cc02_g39860' => 'ccan', 'Cc02_g39870' => 'ccan', 'Cc03_g06760' => 'ccan', 'Cc06_g02450' => 'ccan', 'Cc09_g09450' => 'ccan', 'CDE02G1959' => 'cde', 'CDE04G0600' => 'cde', 'CDE07G1996' => 'cde', 'CDE07G2078' => 'cde', 'CDE11G0611' => 'cde', 'Cfa001683' => 'cfa', 'Cfa001734' => 'cfa', 'Cfa001737' => 'cfa', 'Cfa003751' => 'cfa', 'Cfa012019' => 'cfa', 'Cfa017353' => 'cfa', 'Cfa017732' => 'cfa', 'Cfa022464' => 'cfa', 'Ciclev10012400m.g' => 'ccl', 'Ciclev10021242m.g' => 'ccl', 'Ciclev10021302m.g' => 'ccl', 'Ciclev10021463m.g' => 'ccl', 'Ciclev10032359m.g' => 'ccl', 'CiPaw.01G081000' => 'cil', 'CiPaw.01G262500' => 'cil', 'CiPaw.01G269800' => 'cil', 'CiPaw.02G168400' => 'cil', 'CiPaw.05G119500' => 'cil', 'CiPaw.11G147300' => 'cil', 'ClCG01G003630' => 'cla', 'ClCG05G000510' => 'cla', 'ClCG05G002300' => 'cla', 'ClCG08G007650' => 'cla', 'ClCG10G021250' => 'cla', 'COL.COLO4_06218' => 'col', 'COL.COLO4_12538' => 'col', 'COL.COLO4_14775' => 'col', 'COL.COLO4_23875' => 'col', 'Cpa.g.sc141.16' => 'cpa', 'Cpa.g.sc169.16' => 'cpa', 'Cpa.g.sc244.4' => 'cpa', 'Cpa.g.sc244.5' => 'cpa', 'Cpa.g.sc29.87' => 'cpa', 'Cpa.g.sc53.115' => 'cpa', 'Cre03.g207502' => 'cre', 'Cre06.g277000' => 'cre', 'Cre09.g394050' => 'cre', 'CsaV3_3G007680' => 'csa', 'CsaV3_3G009710' => 'csa', 'CsaV3_3G034790' => 'csa', 'CsaV3_5G003750' => 'csa', 'CsaV3_6G036620' => 'csa', 'CSS0002288' => 'camsi', 'CSS0011250' => 'camsi', 'CSS0021619' => 'camsi', 'CSS0046701' => 'camsi', 'DCAR_006420' => 'dca', 'DCAR_006865' => 'dca', 'DCAR_008558' => 'dca', 'DCAR_028754' => 'dca', 'DCAR_028755' => 'dca', 'Dinv31218' => 'din', 'Dinv32371' => 'din', 'Dinv34250' => 'din', 'Dinv37156' => 'din', 'Dinv43704' => 'din', 'Duzib093G1811' => 'dzi', 'Duzib106G1622' => 'dzi', 'Duzib114G0504' => 'dzi', 'Duzib128G0338' => 'dzi', 'Duzib128G1577' => 'dzi', 'Duzib133G0104' => 'dzi', 'Duzib133G1080' => 'dzi', 'Duzib138G0324' => 'dzi', 'Duzib138G0394' => 'dzi', 'Duzib205G0122' => 'dzi', 'Duzib268G1020' => 'dzi', 'Duzib268G1359' => 'dzi', 'ECA232G3929' => 'eca', 'ECA236G2210' => 'eca', 'ECA236G2287' => 'eca', 'ECA240G4568' => 'eca', 'ECA247G0894' => 'eca', 'EL10Ac1g00200' => 'bvu', 'EL10Ac1g00886' => 'bvu', 'EL10As1g23091' => 'bvu', 'EL10As1g23092' => 'bvu', 'Eucgr.A01284' => 'egr', 'Eucgr.A01285' => 'egr', 'Eucgr.D02456' => 'egr', 'Eucgr.E00018' => 'egr', 'Eucgr.E01439' => 'egr', 'Eucgr.G02859' => 'egr', 'FAN01G0168' => 'fan', 'FAN01G0453' => 'fan', 'FAN01G2761' => 'fan', 'FAN02G1239' => 'fan', 'FAN03G0645' => 'fan', 'FAN03G2707' => 'fan', 'FAN03G2978' => 'fan', 'FAN04G0227' => 'fan', 'FAN06G0091' => 'fan', 'FAN06G1418' => 'fan', 'FAN06G1512' => 'fan', 'FAN06G1986' => 'fan', 'FAN06G2905' => 'fan', 'FAN06G4325' => 'fan', 'FAN08G0033' => 'fan', 'FAN09G0642' => 'fan', 'FAN10G1763' => 'fan', 'FAN10G2026' => 'fan', 'FAN10G2513' => 'fan', 'FAN10G3402' => 'fan', 'FAN10G3564' => 'fan', 'FAN10G3987' => 'fan', 'FAN13G1490' => 'fan', 'FAN14G5857' => 'fan', 'FAN18G1188' => 'fan', 'FvH4_5g00750' => 'fve', 'FvH4_6g13410' => 'fve', 'FvH4_7g11740' => 'fve', 'FvH4_7g17410' => 'fve', 'FvH4_7g18860' => 'fve', 'Glyma.01G099100' => 'gma', 'Glyma.01G142300' => 'gma', 'Glyma.03G025500' => 'gma', 'Glyma.03G069700' => 'gma', 'Glyma.03G260000' => 'gma', 'Glyma.09G269800' => 'gma', 'Glyma.10G208700' => 'gma', 'Glyma.18G220400' => 'gma', 'Glyma.20G182000' => 'gma', 'Gohir.A01G221726' => 'ghi', 'Gohir.A07G134600' => 'ghi', 'Gohir.A07G146000' => 'ghi', 'Gohir.A08G173900' => 'ghi', 'Gohir.A09G194900' => 'ghi', 'Gohir.A10G204100' => 'ghi', 'Gohir.A11G080600' => 'ghi', 'Gohir.A11G327500' => 'ghi', 'Gohir.A12G101800' => 'ghi', 'Gohir.D01G211200' => 'ghi', 'Gohir.D07G139200' => 'ghi', 'Gohir.D07G152100' => 'ghi', 'Gohir.D08G192600' => 'ghi', 'Gohir.D09G189200' => 'ghi', 'Gohir.D10G212000' => 'ghi', 'Gohir.D11G085200' => 'ghi', 'Gohir.D11G346400' => 'ghi', 'Gohir.D12G104800' => 'ghi', 'Gorai.001G151300' => 'gra', 'Gorai.001G174100' => 'gra', 'Gorai.002G257000' => 'gra', 'Gorai.004G202600' => 'gra', 'Gorai.007G090900' => 'gra', 'Gorai.007G376700' => 'gra', 'Gorai.008G114100' => 'gra', 'Gorai.011G237900' => 'gra', 'GSVIVG01005450001' => 'vvi', 'GSVIVG01016232001' => 'vvi', 'GSVIVG01026157001' => 'vvi', 'GSVIVG01027419001' => 'vvi', 'GSVIVG01027631001' => 'vvi', 'GSVIVG01034143001' => 'vvi', 'HanXRQChr03g0093921' => 'han', 'HanXRQChr04g0120001' => 'han', 'HanXRQChr04g0122561' => 'han', 'HanXRQChr09g0246851' => 'han', 'HanXRQChr10g0293311' => 'han', 'HanXRQChr13g0425231' => 'han', 'HanXRQChr16g0532571' => 'han', 'Haze_09050' => 'cav', 'Haze_15715' => 'cav', 'Haze_15716' => 'cav', 'Haze_16803' => 'cav', 'Haze_16850' => 'cav', 'Hma1.2p1_0301F.1_g118655' => 'hma', 'Hma1.2p1_0309F.1_g120590' => 'hma', 'Hma1.2p1_0936F.1_g238900' => 'hma', 'Hma1.2p1_3552F.1_g336740' => 'hma', 'HPP92_003520' => 'vpl', 'HPP92_006628' => 'vpl', 'HPP92_006645' => 'vpl', 'HPP92_014669' => 'vpl', 'HPP92_015077' => 'vpl', 'Hund16742' => 'sun', 'Hund17022' => 'sun', 'Lalb_Chr02g0152131' => 'lal', 'Lalb_Chr05g0225371' => 'lal', 'Lalb_Chr07g0189841' => 'lal', 'Lalb_Chr07g0192961' => 'lal', 'Lalb_Chr12g0208221' => 'lal', 'Lalb_Chr13g0291211' => 'lal', 'Lalb_Chr13g0291781' => 'lal', 'Lalb_Chr18g0044651' => 'lal', 'Lalb_Chr21g0313731' => 'lal', 'Lj1g0022533' => 'lja', 'Lj2A18T50' => 'lonja', 'Lj2A92G93' => 'lonja', 'Lj3A965T73' => 'lonja', 'Lj3g0000673' => 'lja', 'Lj3g0002666' => 'lja', 'Lj4g0016985' => 'lja', 'Lj5g0003625' => 'lja', 'Lj7A529G36' => 'lonja', 'Lj9A569T49' => 'lonja', 'Lj9A604T63' => 'lonja', 'Lsat_1_v5_gn_3_132060' => 'lsa', 'Lsat_1_v5_gn_4_68941' => 'lsa', 'Lsat_1_v5_gn_5_95580' => 'lsa', 'Lsat_1_v5_gn_7_161' => 'lsa', 'Lsat_1_v5_gn_7_7041' => 'lsa', 'Lsat_1_v5_gn_9_33481' => 'lsa', 'Lsat_1_v5_gn_9_68260' => 'lsa', 'Manes.01G073100' => 'mes', 'Manes.01G266300' => 'mes', 'Manes.02G033300' => 'mes', 'Manes.05G017900' => 'mes', 'Manes.05G046100' => 'mes', 'Manes.08G080900' => 'mes', 'Manes.10G049400' => 'mes', 'Mapoly0009s0186' => 'mpo', 'Mapoly0036s0118' => 'mpo', 'Mapoly0101s0046' => 'mpo', 'MBI04_g30218_MAGBIO' => 'mbi', 'MBI04_g35564_MAGBIO' => 'mbi', 'MBI12_g34011_MAGBIO' => 'mbi', 'MBI14_g04655_MAGBIO' => 'mbi', 'MCO07G653' => 'mco', 'MCO10G173' => 'mco', 'MD01G1087100' => 'mdo', 'MD01G1104200' => 'mdo', 'MD02G1205100' => 'mdo', 'MD04G1079200' => 'mdo', 'MD04G1131400' => 'mdo', 'MD07G1121600' => 'mdo', 'MD07G1157300' => 'mdo', 'MD07G1171000' => 'mdo', 'MD12G1144500' => 'mdo', 'Medtr1g094610' => 'mtr', 'Medtr4g021795' => 'mtr', 'Medtr4g023760' => 'mtr', 'Medtr7g118050' => 'mtr', 'MELO3C005582.2' => 'cme', 'MELO3C005989.2' => 'cme', 'MELO3C006192.2' => 'cme', 'MELO3C009248.2' => 'cme', 'MELO3C019817.2' => 'cme', 'Migut.B01625' => 'egut', 'Migut.B01915' => 'egut', 'Migut.F01721' => 'egut', 'Migut.J00314' => 'egut', 'MSTRG.20742' => 'ama', 'MSTRG.8134' => 'ama', 'Nitab4.5_0000096g0010' => 'nta', 'Nitab4.5_0000202g0030' => 'nta', 'Nitab4.5_0000216g0370' => 'nta', 'Nitab4.5_0000457g0230' => 'nta', 'Nitab4.5_0001702g0170' => 'nta', 'Nitab4.5_0003607g0010' => 'nta', 'Nitab4.5_0004917g0020' => 'nta', 'Nitab4.5_0007059g0010' => 'nta', 'Nitab4.5_0007184g0010' => 'nta', 'Nitab4.5_0007346g0020' => 'nta', 'Nn1g00410' => 'nnu', 'Nn1g01252' => 'nnu', 'Nn2g11168' => 'nnu', 'Nn2g13403' => 'nnu', 'Nn2g13760' => 'nnu', 'Nn4g26380' => 'nnu', 'Oeu000806.2' => 'oeu', 'Oeu005788.1' => 'oeu', 'Oeu006900.3' => 'oeu', 'Oeu007797.1' => 'oeu', 'Oeu011932.1' => 'oeu', 'Oeu022739.1' => 'oeu', 'Oeu037918.1' => 'oeu', 'Oeu055490.2' => 'oeu', 'Os01g0844400' => 'osa', 'Os02g0819100' => 'osa', 'Os03g0804300' => 'osa', 'Os05g0458000' => 'osa', 'Os07g0467800' => 'osa', 'Os12g0602200' => 'osa', 'Peaxi162Scf00013g03444' => 'pax', 'Peaxi162Scf00094g01120' => 'pax', 'Peaxi162Scf00191g01211' => 'pax', 'Peaxi162Scf00238g01110' => 'pax', 'Peaxi162Scf00330g00719' => 'pax', 'Peaxi162Scf00627g00018' => 'pax', 'PGR031G2686' => 'pgr', 'PGR042G0809' => 'pgr', 'PGR142G0193' => 'pgr', 'PGSC0003DMG400011066' => 'stu', 'PGSC0003DMG400012041' => 'stu', 'PGSC0003DMG400013678' => 'stu', 'PGSC0003DMG400023477' => 'stu', 'PGSC0003DMG400025956' => 'stu', 'PGSC0003DMG401019151' => 'stu', 'Phvul.006G116400' => 'pvu', 'Phvul.007G097300' => 'pvu', 'Phvul.010G015000' => 'pvu', 'Phvul.010G083900' => 'pvu', 'Potri.001G117100' => 'ptr', 'Potri.002G147300' => 'ptr', 'Potri.003G115600' => 'ptr', 'Potri.006G087400' => 'ptr', 'Potri.010G226100' => 'ptr', 'Potri.014G069200' => 'ptr', 'Potri.014G104000' => 'ptr', 'Potri.016G100200' => 'ptr', 'Pp3c10_20450' => 'ppa', 'Pp3c1_42400' => 'ppa', 'Pp3c3_24390' => 'ppa', 'Pp3c3_2860' => 'ppa', 'PRCOL_00003193' => 'pco', 'Prupe.2G144500' => 'ppe', 'Prupe.2G195700' => 'ppe', 'Prupe.2G209800' => 'ppe', 'Prupe.5G080000' => 'ppe', 'Prupe.6G257900' => 'ppe', 'Psat3g001160' => 'psa', 'Psat6g181880' => 'psa', 'Psat7g233720' => 'psa', 'PSO063G7587' => 'pso', 'PSO339G2145' => 'pso', 'PSO339G3369' => 'pso', 'PSO478G2747' => 'pso', 'PSO513G0140' => 'pso', 'PSO782G1614' => 'pso', 'PSO782G4889' => 'pso', 'PSO782G5485' => 'pso', 'PSO801G0241' => 'pso', 'QL07p048854' => 'qlo', 'QL08p046745' => 'qlo', 'QL08p052606' => 'qlo', 'QL08p053414' => 'qlo', 'QL08p054868' => 'qlo', 'RcHm_v2.0_Chr1g0350251' => 'rch', 'RcHm_v2.0_Chr1g0360851' => 'rch', 'RcHm_v2.0_Chr1g0362791' => 'rch', 'RcHm_v2.0_Chr3g0466281' => 'rch', 'RcHm_v2.0_Chr7g0201481' => 'rch', 'Rhsim01G0148600' => 'rsi', 'Rhsim05G0194400' => 'rsi', 'Rhsim07G0000700' => 'rsi', 'Rhsim07G0000800' => 'rsi', 'Rhsim07G0027900' => 'rsi', 'Rhsim09G0149500' => 'rsi', 'RhsimUnG0186900' => 'rsi', 'Sabra01G0089900' => 'sbr', 'Sabra02G0114700' => 'sbr', 'Sabra02G0116300' => 'sbr', 'Sabra03G0080100' => 'sbr', 'Sabra08G0024300' => 'sbr', 'Sabra10G0174300' => 'sbr', 'Sabra14G0048900' => 'sbr', 'Sabra14G0076500' => 'sbr', 'SalBow5G2513' => 'sbo', 'Sc01g0002300' => 'sci', 'Sc01g0004450' => 'sci', 'Sc06g0001680' => 'sci', 'Sc23g0003580' => 'sci', 'Sed0000913' => 'sed', 'Sed0001655' => 'sed', 'Sed0007745' => 'sed', 'Sed0010951' => 'sed', 'Sed0017599' => 'sed', 'Sed0021405' => 'sed', 'Sed0022810' => 'sed', 'SEGI_07099' => 'sgi', 'SEGI_11931' => 'sgi', 'SEGI_13187' => 'sgi', 'SEGI_29958' => 'sgi', 'SEGI_36351' => 'sgi', 'SGA_v2.0_scaffold126G33770' => 'sas', 'SGA_v2.0_scaffold153G37003' => 'sas', 'SGA_v2.0_scaffold2G01359' => 'sas', 'SGA_v2.0_scaffold5G03064' => 'sas', 'SGA_v2.0_scaffold95G28903' => 'sas', 'SHI12701' => 'shi', 'SHI26410' => 'shi', 'SHI38997' => 'shi', 'SHI53759' => 'shi', 'SHI53886' => 'shi', 'SHI54714' => 'shi', 'SMO011G0041' => 'smo', 'SMO146G0251' => 'smo', 'SMO160G0004' => 'smo', 'SMO174G0057' => 'smo', 'SMO244G0089' => 'smo', 'SMO296G0011' => 'smo', 'Solyc01g091280.3' => 'sly', 'Solyc05g047610.3' => 'sly', 'Solyc05g047640.3' => 'sly', 'Solyc05g055630.3' => 'sly', 'Solyc10g018160.2' => 'sly', 'Solyc10g084820.2' => 'sly', 'Solyc10g086565.2' => 'sly', 'Sopen01g037030' => 'spe', 'Sopen05g027920' => 'spe', 'Sopen05g034070' => 'spe', 'Sopen10g007260' => 'spe', 'Sopen10g034260' => 'spe', 'Sopen10g035950' => 'spe', 'Sp3g07710' => 'spa', 'Sp4g27420' => 'spa', 'Sp5g02450' => 'spa', 'Sp6g01280' => 'spa', 'Sp6g38480' => 'spa', 'Sp7g20780' => 'spa', 'TAR374G1413' => 'tar', 'TAR623G1777' => 'tar', 'TAR629G2370' => 'tar', 'TAR633G1759' => 'tar', 'TAR636G3387' => 'tar', 'THA.LOC104802447' => 'tha', 'THA.LOC104813916' => 'tha', 'THA.LOC104816423' => 'tha', 'THA.LOC104817246' => 'tha', 'THA.LOC104825895' => 'tha', 'Thecc.01G335200' => 'tca', 'Thecc.01G377400' => 'tca', 'Thecc.03G262200' => 'tca', 'Thecc.05G036800' => 'tca', 'Thecc.10G080500' => 'tca', 'Thecc.10G080800' => 'tca', 'Thhalv10001560m.g' => 'esa', 'Thhalv10006120m.g' => 'esa', 'Thhalv10014375m.g' => 'esa', 'Thhalv10021264m.g' => 'esa', 'Thhalv10028856m.g' => 'esa', 'TPR.G1914' => 'tpr', 'TPR.G4757' => 'tpr', 'TPR.G5595' => 'tpr', 'TWI14G0952' => 'twi', 'TWI14G1307' => 'twi', 'TWI38G2143' => 'twi', 'TWI59G0826' => 'twi', 'TWI77G0527' => 'twi', 'TWI81G0150' => 'twi', 'unitig_21.g21018' => 'ugi', 'unitig_26.g9725' => 'ugi', 'unitig_744.g24653' => 'ugi', 'unitig_749.g13778' => 'ugi', 'unitig_899.g15035' => 'ugi', 'vmacro04296' => 'vma', 'vmacro04852' => 'vma', 'vmacro13404' => 'vma', 'vmacro20169' => 'vma', 'vmacro21014' => 'vma', 'VMungo0331G0237' => 'vmu', 'VMungo0331G0706' => 'vmu', 'VMungo0331G1361' => 'vmu', 'VMungo0331G1489' => 'vmu', 'VMungo0540G1037' => 'vmu', 'VMungo0720G2487' => 'vmu', 'VMungo0720G2721' => 'vmu', 'Zm00001eb086860' => 'zma', 'Zm00001eb104760' => 'zma', 'Zm00001eb148220' => 'zma', 'Zm00001eb259030' => 'zma', 'Zm00001eb289590' => 'zma', 'Zm00001eb420150' => 'zma' ) $gf_id = 'HOM05D000968' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000968' ) $data_identifier = 'HOM05D000968' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 19, 'bol' => (int) 9, 'bra' => (int) 12, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 5, 'ccan' => (int) 7, 'cde' => (int) 5, 'cfa' => (int) 8, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 4, 'dca' => (int) 5, 'din' => (int) 5, 'dzi' => (int) 12, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 25, 'fve' => (int) 5, 'gma' => (int) 9, 'ghi' => (int) 18, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 7, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 5, 'sun' => (int) 2, 'lal' => (int) 9, 'lja' => (int) 5, 'lonja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 9, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 2, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 3, 'stu' => (int) 6, 'pvu' => (int) 4, 'ptr' => (int) 8, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 3, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 1, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 5, 'sas' => (int) 5, 'shi' => (int) 6, 'smo' => (int) 6, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 3, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420150' $species_info = array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ) $local_species = 'vmu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000968', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p31690' => 'bna', 'A03p36040' => 'bna', 'A03p53730' => 'bna', 'A04p01410' => 'bna', 'A05p05420' => 'bna', 'A05p39630' => 'bna', 'A05p39640' => 'bna', 'A09p00970' => 'bna', 'A09p53060' => 'bna', 'A10p31890' => 'bna', 'Aa31LG10G15040' => 'aar', 'Aa31LG1G21090' => 'aar', 'Aa31LG1G26900' => 'aar', 'Aa31LG3G1820' => 'aar', 'Aa31LG5G1100' => 'aar', 'Aa31LG6G4740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2265' => 'aag', 'Actinidia07998' => 'ach', 'Actinidia11266' => 'ach', 'Actinidia12682' => 'ach', 'Actinidia26479' => 'ach', 'Actinidia31406' => 'ach', 'Actinidia32437' => 'ach', 'Actinidia38862' => 'ach', 'Ah.05g174230' => 'amhyb', 'Ah.05g179070' => 'amhyb', 'Ah.05g179090' => 'amhyb', 'Ah.12g059950' => 'amhyb', 'AL3G20480' => 'aly', 'AL4G44520' => 'aly', 'AL5G43110' => 'aly', 'AL6G13890' => 'aly', 'AL6G52620' => 'aly', 'AL7G30830' => 'aly', 'Aqoxy1G00899' => 'aox', 'Aqoxy5G04333' => 'aox', 'Aqoxy7G00641' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3IZ0NN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4EF6AW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W9P8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79GA3M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C43NQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFCU6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G95YVJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCHK29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LU1UG8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX91RN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGB4B1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8DA0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9H7JI' => 'arhy', 'AT3G09320' => 'ath', 'AT3G60800' => 'ath', 'AT4G00840' => 'ath', 'AT4G22750' => 'ath', 'AT5G04270' => 'ath', 'ATR0090G003' => 'atr', 'ATR0559G349' => 'atr', 'ATR0680G261' => 'atr', 'ATR0810G048' => 'atr', 'Atru.chr12.831' => 'acertr', 'Atru.chr5.303' => 'acertr', 'Atru.chr5.748' => 'acertr', 'Atru.chr8.1999' => 'acertr', 'Atru.chr9.1436' => 'acertr', 'AUR62004211' => 'cqu', 'AUR62004548' => 'cqu', 'AUR62013637' => 'cqu', 'AUR62022662' => 'cqu', 'AUR62025777' => 'cqu', 'AUR62042386' => 'cqu', 'BcaB01g02310' => 'bca', 'BcaB01g06062' => 'bca', 'BcaB02g08975' => 'bca', 'BcaB02g08980' => 'bca', 'BcaC01g04228' => 'bca', 'BcaC01g06830' => 'bca', 'BcaC02g10186' => 'bca', 'BcaC02g12214' => 'bca', 'BcaC04g24101' => 'bca', 'BcaC05g29520' => 'bca', 'BcaC05g29661' => 'bca', 'BcaC06g32130' => 'bca', 'BcaC06g32131' => 'bca', 'BcaC07g40601' => 'bca', 'BcaC07g42641' => 'bca', 'BcaNung01038' => 'bca', 'BcaNung01676' => 'bca', 'BcaNung02480' => 'bca', 'BcaNung07376' => 'bca', 'BolC3t16146H' => 'bol', 'BolC3t16637H' => 'bol', 'BolC4t22257H' => 'bol', 'BolC4t24728H' => 'bol', 'BolC5t34517H' => 'bol', 'BolC7t45703H' => 'bol', 'BolC8t51166H' => 'bol', 'BolC9t53038H' => 'bol', 'BolC9t60000H' => 'bol', 'BraA01t01345Z' => 'bra', 'BraA01t01346Z' => 'bra', 'BraA01t01348Z' => 'bra', 'BraA03t12347Z' => 'bra', 'BraA03t12775Z' => 'bra', 'BraA03t14439Z' => 'bra', 'BraA04t15860Z' => 'bra', 'BraA05t19511Z' => 'bra', 'BraA05t22746Z' => 'bra', 'BraA09t35767Z' => 'bra', 'BraA09t40732Z' => 'bra', 'BraA10t45233Z' => 'bra', 'C03p38720' => 'bna', 'C03p43680' => 'bna', 'C04p06350' => 'bna', 'C04p31800' => 'bna', 'C05p58680' => 'bna', 'C07p52110' => 'bna', 'C08p35760' => 'bna', 'C09p01050' => 'bna', 'C09p72600' => 'bna', 'CAN.G106.2' => 'can', 'CAN.G1482.1' => 'can', 'CAN.G324.12' => 'can', 'CAN.G388.20' => 'can', 'CAN.G412.7' => 'can', 'CAN.G694.32' => 'can', 'CAN.G92.12' => 'can', 'CANSAT11G2353' => 'cansat', 'CANSAT21G1398' => 'cansat', 'CANSAT56G2456' => 'cansat', 'CANSAT56G3031' => 'cansat', 'CANSAT56G4539' => 'cansat', 'CARHR083680' => 'chi', 'CARHR171190' => 'chi', 'CARHR209010' => 'chi', 'CARHR229680' => 'chi', 'CARHR249490' => 'chi', 'Carub.0003s0844' => 'cru', 'Carub.0005s2755' => 'cru', 'Carub.0006s0322' => 'cru', 'Carub.0006s3586' => 'cru', 'Carub.0007s1855' => 'cru', 'Ca_07808_v3' => 'car', 'Ca_09535_v3' => 'car', 'Ca_10548_v3' => 'car', 'Ca_19913_v3' => 'car', 'Ca_19916_v3' => 'car', 'Ca_19975_v3' => 'car', 'CBR_g22876' => 'cbr', 'CBR_g22879' => 'cbr', 'CBR_g38491' => 'cbr', 'CBR_g54185' => 'cbr', 'CBR_g54190' => 'cbr', 'Cc02_g11020' => 'ccan', 'Cc02_g23920' => 'ccan', 'Cc02_g39860' => 'ccan', 'Cc02_g39870' => 'ccan', 'Cc03_g06760' => 'ccan', 'Cc06_g02450' => 'ccan', 'Cc09_g09450' => 'ccan', 'CDE02G1959' => 'cde', 'CDE04G0600' => 'cde', 'CDE07G1996' => 'cde', 'CDE07G2078' => 'cde', 'CDE11G0611' => 'cde', 'Cfa001683' => 'cfa', 'Cfa001734' => 'cfa', 'Cfa001737' => 'cfa', 'Cfa003751' => 'cfa', 'Cfa012019' => 'cfa', 'Cfa017353' => 'cfa', 'Cfa017732' => 'cfa', 'Cfa022464' => 'cfa', 'Ciclev10012400m.g' => 'ccl', 'Ciclev10021242m.g' => 'ccl', 'Ciclev10021302m.g' => 'ccl', 'Ciclev10021463m.g' => 'ccl', 'Ciclev10032359m.g' => 'ccl', 'CiPaw.01G081000' => 'cil', 'CiPaw.01G262500' => 'cil', 'CiPaw.01G269800' => 'cil', 'CiPaw.02G168400' => 'cil', 'CiPaw.05G119500' => 'cil', 'CiPaw.11G147300' => 'cil', 'ClCG01G003630' => 'cla', 'ClCG05G000510' => 'cla', 'ClCG05G002300' => 'cla', 'ClCG08G007650' => 'cla', 'ClCG10G021250' => 'cla', 'COL.COLO4_06218' => 'col', 'COL.COLO4_12538' => 'col', 'COL.COLO4_14775' => 'col', 'COL.COLO4_23875' => 'col', 'Cpa.g.sc141.16' => 'cpa', 'Cpa.g.sc169.16' => 'cpa', 'Cpa.g.sc244.4' => 'cpa', 'Cpa.g.sc244.5' => 'cpa', 'Cpa.g.sc29.87' => 'cpa', 'Cpa.g.sc53.115' => 'cpa', 'Cre03.g207502' => 'cre', 'Cre06.g277000' => 'cre', 'Cre09.g394050' => 'cre', 'CsaV3_3G007680' => 'csa', 'CsaV3_3G009710' => 'csa', 'CsaV3_3G034790' => 'csa', 'CsaV3_5G003750' => 'csa', 'CsaV3_6G036620' => 'csa', 'CSS0002288' => 'camsi', 'CSS0011250' => 'camsi', 'CSS0021619' => 'camsi', 'CSS0046701' => 'camsi', 'DCAR_006420' => 'dca', 'DCAR_006865' => 'dca', 'DCAR_008558' => 'dca', 'DCAR_028754' => 'dca', 'DCAR_028755' => 'dca', 'Dinv31218' => 'din', 'Dinv32371' => 'din', 'Dinv34250' => 'din', 'Dinv37156' => 'din', 'Dinv43704' => 'din', 'Duzib093G1811' => 'dzi', 'Duzib106G1622' => 'dzi', 'Duzib114G0504' => 'dzi', 'Duzib128G0338' => 'dzi', 'Duzib128G1577' => 'dzi', 'Duzib133G0104' => 'dzi', 'Duzib133G1080' => 'dzi', 'Duzib138G0324' => 'dzi', 'Duzib138G0394' => 'dzi', 'Duzib205G0122' => 'dzi', 'Duzib268G1020' => 'dzi', 'Duzib268G1359' => 'dzi', 'ECA232G3929' => 'eca', 'ECA236G2210' => 'eca', 'ECA236G2287' => 'eca', 'ECA240G4568' => 'eca', 'ECA247G0894' => 'eca', 'EL10Ac1g00200' => 'bvu', 'EL10Ac1g00886' => 'bvu', 'EL10As1g23091' => 'bvu', 'EL10As1g23092' => 'bvu', 'Eucgr.A01284' => 'egr', 'Eucgr.A01285' => 'egr', 'Eucgr.D02456' => 'egr', 'Eucgr.E00018' => 'egr', 'Eucgr.E01439' => 'egr', 'Eucgr.G02859' => 'egr', 'FAN01G0168' => 'fan', 'FAN01G0453' => 'fan', 'FAN01G2761' => 'fan', 'FAN02G1239' => 'fan', 'FAN03G0645' => 'fan', 'FAN03G2707' => 'fan', 'FAN03G2978' => 'fan', 'FAN04G0227' => 'fan', 'FAN06G0091' => 'fan', 'FAN06G1418' => 'fan', 'FAN06G1512' => 'fan', 'FAN06G1986' => 'fan', 'FAN06G2905' => 'fan', 'FAN06G4325' => 'fan', 'FAN08G0033' => 'fan', 'FAN09G0642' => 'fan', 'FAN10G1763' => 'fan', 'FAN10G2026' => 'fan', 'FAN10G2513' => 'fan', 'FAN10G3402' => 'fan', 'FAN10G3564' => 'fan', 'FAN10G3987' => 'fan', 'FAN13G1490' => 'fan', 'FAN14G5857' => 'fan', 'FAN18G1188' => 'fan', 'FvH4_5g00750' => 'fve', 'FvH4_6g13410' => 'fve', 'FvH4_7g11740' => 'fve', 'FvH4_7g17410' => 'fve', 'FvH4_7g18860' => 'fve', 'Glyma.01G099100' => 'gma', 'Glyma.01G142300' => 'gma', 'Glyma.03G025500' => 'gma', 'Glyma.03G069700' => 'gma', 'Glyma.03G260000' => 'gma', 'Glyma.09G269800' => 'gma', 'Glyma.10G208700' => 'gma', 'Glyma.18G220400' => 'gma', 'Glyma.20G182000' => 'gma', 'Gohir.A01G221726' => 'ghi', 'Gohir.A07G134600' => 'ghi', 'Gohir.A07G146000' => 'ghi', 'Gohir.A08G173900' => 'ghi', 'Gohir.A09G194900' => 'ghi', 'Gohir.A10G204100' => 'ghi', 'Gohir.A11G080600' => 'ghi', 'Gohir.A11G327500' => 'ghi', 'Gohir.A12G101800' => 'ghi', 'Gohir.D01G211200' => 'ghi', 'Gohir.D07G139200' => 'ghi', 'Gohir.D07G152100' => 'ghi', 'Gohir.D08G192600' => 'ghi', 'Gohir.D09G189200' => 'ghi', 'Gohir.D10G212000' => 'ghi', 'Gohir.D11G085200' => 'ghi', 'Gohir.D11G346400' => 'ghi', 'Gohir.D12G104800' => 'ghi', 'Gorai.001G151300' => 'gra', 'Gorai.001G174100' => 'gra', 'Gorai.002G257000' => 'gra', 'Gorai.004G202600' => 'gra', 'Gorai.007G090900' => 'gra', 'Gorai.007G376700' => 'gra', 'Gorai.008G114100' => 'gra', 'Gorai.011G237900' => 'gra', 'GSVIVG01005450001' => 'vvi', 'GSVIVG01016232001' => 'vvi', 'GSVIVG01026157001' => 'vvi', 'GSVIVG01027419001' => 'vvi', 'GSVIVG01027631001' => 'vvi', 'GSVIVG01034143001' => 'vvi', 'HanXRQChr03g0093921' => 'han', 'HanXRQChr04g0120001' => 'han', 'HanXRQChr04g0122561' => 'han', 'HanXRQChr09g0246851' => 'han', 'HanXRQChr10g0293311' => 'han', 'HanXRQChr13g0425231' => 'han', 'HanXRQChr16g0532571' => 'han', 'Haze_09050' => 'cav', 'Haze_15715' => 'cav', 'Haze_15716' => 'cav', 'Haze_16803' => 'cav', 'Haze_16850' => 'cav', 'Hma1.2p1_0301F.1_g118655' => 'hma', 'Hma1.2p1_0309F.1_g120590' => 'hma', 'Hma1.2p1_0936F.1_g238900' => 'hma', 'Hma1.2p1_3552F.1_g336740' => 'hma', 'HPP92_003520' => 'vpl', 'HPP92_006628' => 'vpl', 'HPP92_006645' => 'vpl', 'HPP92_014669' => 'vpl', 'HPP92_015077' => 'vpl', 'Hund16742' => 'sun', 'Hund17022' => 'sun', 'Lalb_Chr02g0152131' => 'lal', 'Lalb_Chr05g0225371' => 'lal', 'Lalb_Chr07g0189841' => 'lal', 'Lalb_Chr07g0192961' => 'lal', 'Lalb_Chr12g0208221' => 'lal', 'Lalb_Chr13g0291211' => 'lal', 'Lalb_Chr13g0291781' => 'lal', 'Lalb_Chr18g0044651' => 'lal', 'Lalb_Chr21g0313731' => 'lal', 'Lj1g0022533' => 'lja', 'Lj2A18T50' => 'lonja', 'Lj2A92G93' => 'lonja', 'Lj3A965T73' => 'lonja', 'Lj3g0000673' => 'lja', 'Lj3g0002666' => 'lja', 'Lj4g0016985' => 'lja', 'Lj5g0003625' => 'lja', 'Lj7A529G36' => 'lonja', 'Lj9A569T49' => 'lonja', 'Lj9A604T63' => 'lonja', 'Lsat_1_v5_gn_3_132060' => 'lsa', 'Lsat_1_v5_gn_4_68941' => 'lsa', 'Lsat_1_v5_gn_5_95580' => 'lsa', 'Lsat_1_v5_gn_7_161' => 'lsa', 'Lsat_1_v5_gn_7_7041' => 'lsa', 'Lsat_1_v5_gn_9_33481' => 'lsa', 'Lsat_1_v5_gn_9_68260' => 'lsa', 'Manes.01G073100' => 'mes', 'Manes.01G266300' => 'mes', 'Manes.02G033300' => 'mes', 'Manes.05G017900' => 'mes', 'Manes.05G046100' => 'mes', 'Manes.08G080900' => 'mes', 'Manes.10G049400' => 'mes', 'Mapoly0009s0186' => 'mpo', 'Mapoly0036s0118' => 'mpo', 'Mapoly0101s0046' => 'mpo', 'MBI04_g30218_MAGBIO' => 'mbi', 'MBI04_g35564_MAGBIO' => 'mbi', 'MBI12_g34011_MAGBIO' => 'mbi', 'MBI14_g04655_MAGBIO' => 'mbi', 'MCO07G653' => 'mco', 'MCO10G173' => 'mco', 'MD01G1087100' => 'mdo', 'MD01G1104200' => 'mdo', 'MD02G1205100' => 'mdo', 'MD04G1079200' => 'mdo', 'MD04G1131400' => 'mdo', 'MD07G1121600' => 'mdo', 'MD07G1157300' => 'mdo', 'MD07G1171000' => 'mdo', 'MD12G1144500' => 'mdo', 'Medtr1g094610' => 'mtr', 'Medtr4g021795' => 'mtr', 'Medtr4g023760' => 'mtr', 'Medtr7g118050' => 'mtr', 'MELO3C005582.2' => 'cme', 'MELO3C005989.2' => 'cme', 'MELO3C006192.2' => 'cme', 'MELO3C009248.2' => 'cme', 'MELO3C019817.2' => 'cme', 'Migut.B01625' => 'egut', 'Migut.B01915' => 'egut', 'Migut.F01721' => 'egut', 'Migut.J00314' => 'egut', 'MSTRG.20742' => 'ama', 'MSTRG.8134' => 'ama', 'Nitab4.5_0000096g0010' => 'nta', 'Nitab4.5_0000202g0030' => 'nta', 'Nitab4.5_0000216g0370' => 'nta', 'Nitab4.5_0000457g0230' => 'nta', 'Nitab4.5_0001702g0170' => 'nta', 'Nitab4.5_0003607g0010' => 'nta', 'Nitab4.5_0004917g0020' => 'nta', 'Nitab4.5_0007059g0010' => 'nta', 'Nitab4.5_0007184g0010' => 'nta', 'Nitab4.5_0007346g0020' => 'nta', 'Nn1g00410' => 'nnu', 'Nn1g01252' => 'nnu', 'Nn2g11168' => 'nnu', 'Nn2g13403' => 'nnu', 'Nn2g13760' => 'nnu', 'Nn4g26380' => 'nnu', 'Oeu000806.2' => 'oeu', 'Oeu005788.1' => 'oeu', 'Oeu006900.3' => 'oeu', 'Oeu007797.1' => 'oeu', 'Oeu011932.1' => 'oeu', 'Oeu022739.1' => 'oeu', 'Oeu037918.1' => 'oeu', 'Oeu055490.2' => 'oeu', 'Os01g0844400' => 'osa', 'Os02g0819100' => 'osa', 'Os03g0804300' => 'osa', 'Os05g0458000' => 'osa', 'Os07g0467800' => 'osa', 'Os12g0602200' => 'osa', 'Peaxi162Scf00013g03444' => 'pax', 'Peaxi162Scf00094g01120' => 'pax', 'Peaxi162Scf00191g01211' => 'pax', 'Peaxi162Scf00238g01110' => 'pax', 'Peaxi162Scf00330g00719' => 'pax', 'Peaxi162Scf00627g00018' => 'pax', 'PGR031G2686' => 'pgr', 'PGR042G0809' => 'pgr', 'PGR142G0193' => 'pgr', 'PGSC0003DMG400011066' => 'stu', 'PGSC0003DMG400012041' => 'stu', 'PGSC0003DMG400013678' => 'stu', 'PGSC0003DMG400023477' => 'stu', 'PGSC0003DMG400025956' => 'stu', 'PGSC0003DMG401019151' => 'stu', 'Phvul.006G116400' => 'pvu', 'Phvul.007G097300' => 'pvu', 'Phvul.010G015000' => 'pvu', 'Phvul.010G083900' => 'pvu', 'Potri.001G117100' => 'ptr', 'Potri.002G147300' => 'ptr', 'Potri.003G115600' => 'ptr', 'Potri.006G087400' => 'ptr', 'Potri.010G226100' => 'ptr', 'Potri.014G069200' => 'ptr', 'Potri.014G104000' => 'ptr', 'Potri.016G100200' => 'ptr', 'Pp3c10_20450' => 'ppa', 'Pp3c1_42400' => 'ppa', 'Pp3c3_24390' => 'ppa', 'Pp3c3_2860' => 'ppa', 'PRCOL_00003193' => 'pco', 'Prupe.2G144500' => 'ppe', 'Prupe.2G195700' => 'ppe', 'Prupe.2G209800' => 'ppe', 'Prupe.5G080000' => 'ppe', 'Prupe.6G257900' => 'ppe', 'Psat3g001160' => 'psa', 'Psat6g181880' => 'psa', 'Psat7g233720' => 'psa', 'PSO063G7587' => 'pso', 'PSO339G2145' => 'pso', 'PSO339G3369' => 'pso', 'PSO478G2747' => 'pso', 'PSO513G0140' => 'pso', 'PSO782G1614' => 'pso', 'PSO782G4889' => 'pso', 'PSO782G5485' => 'pso', 'PSO801G0241' => 'pso', 'QL07p048854' => 'qlo', 'QL08p046745' => 'qlo', 'QL08p052606' => 'qlo', 'QL08p053414' => 'qlo', 'QL08p054868' => 'qlo', 'RcHm_v2.0_Chr1g0350251' => 'rch', 'RcHm_v2.0_Chr1g0360851' => 'rch', 'RcHm_v2.0_Chr1g0362791' => 'rch', 'RcHm_v2.0_Chr3g0466281' => 'rch', 'RcHm_v2.0_Chr7g0201481' => 'rch', 'Rhsim01G0148600' => 'rsi', 'Rhsim05G0194400' => 'rsi', 'Rhsim07G0000700' => 'rsi', 'Rhsim07G0000800' => 'rsi', 'Rhsim07G0027900' => 'rsi', 'Rhsim09G0149500' => 'rsi', 'RhsimUnG0186900' => 'rsi', 'Sabra01G0089900' => 'sbr', 'Sabra02G0114700' => 'sbr', 'Sabra02G0116300' => 'sbr', 'Sabra03G0080100' => 'sbr', 'Sabra08G0024300' => 'sbr', 'Sabra10G0174300' => 'sbr', 'Sabra14G0048900' => 'sbr', 'Sabra14G0076500' => 'sbr', 'SalBow5G2513' => 'sbo', 'Sc01g0002300' => 'sci', 'Sc01g0004450' => 'sci', 'Sc06g0001680' => 'sci', 'Sc23g0003580' => 'sci', 'Sed0000913' => 'sed', 'Sed0001655' => 'sed', 'Sed0007745' => 'sed', 'Sed0010951' => 'sed', 'Sed0017599' => 'sed', 'Sed0021405' => 'sed', 'Sed0022810' => 'sed', 'SEGI_07099' => 'sgi', 'SEGI_11931' => 'sgi', 'SEGI_13187' => 'sgi', 'SEGI_29958' => 'sgi', 'SEGI_36351' => 'sgi', 'SGA_v2.0_scaffold126G33770' => 'sas', 'SGA_v2.0_scaffold153G37003' => 'sas', 'SGA_v2.0_scaffold2G01359' => 'sas', 'SGA_v2.0_scaffold5G03064' => 'sas', 'SGA_v2.0_scaffold95G28903' => 'sas', 'SHI12701' => 'shi', 'SHI26410' => 'shi', 'SHI38997' => 'shi', 'SHI53759' => 'shi', 'SHI53886' => 'shi', 'SHI54714' => 'shi', 'SMO011G0041' => 'smo', 'SMO146G0251' => 'smo', 'SMO160G0004' => 'smo', 'SMO174G0057' => 'smo', 'SMO244G0089' => 'smo', 'SMO296G0011' => 'smo', 'Solyc01g091280.3' => 'sly', 'Solyc05g047610.3' => 'sly', 'Solyc05g047640.3' => 'sly', 'Solyc05g055630.3' => 'sly', 'Solyc10g018160.2' => 'sly', 'Solyc10g084820.2' => 'sly', 'Solyc10g086565.2' => 'sly', 'Sopen01g037030' => 'spe', 'Sopen05g027920' => 'spe', 'Sopen05g034070' => 'spe', 'Sopen10g007260' => 'spe', 'Sopen10g034260' => 'spe', 'Sopen10g035950' => 'spe', 'Sp3g07710' => 'spa', 'Sp4g27420' => 'spa', 'Sp5g02450' => 'spa', 'Sp6g01280' => 'spa', 'Sp6g38480' => 'spa', 'Sp7g20780' => 'spa', 'TAR374G1413' => 'tar', 'TAR623G1777' => 'tar', 'TAR629G2370' => 'tar', 'TAR633G1759' => 'tar', 'TAR636G3387' => 'tar', 'THA.LOC104802447' => 'tha', 'THA.LOC104813916' => 'tha', 'THA.LOC104816423' => 'tha', 'THA.LOC104817246' => 'tha', 'THA.LOC104825895' => 'tha', 'Thecc.01G335200' => 'tca', 'Thecc.01G377400' => 'tca', 'Thecc.03G262200' => 'tca', 'Thecc.05G036800' => 'tca', 'Thecc.10G080500' => 'tca', 'Thecc.10G080800' => 'tca', 'Thhalv10001560m.g' => 'esa', 'Thhalv10006120m.g' => 'esa', 'Thhalv10014375m.g' => 'esa', 'Thhalv10021264m.g' => 'esa', 'Thhalv10028856m.g' => 'esa', 'TPR.G1914' => 'tpr', 'TPR.G4757' => 'tpr', 'TPR.G5595' => 'tpr', 'TWI14G0952' => 'twi', 'TWI14G1307' => 'twi', 'TWI38G2143' => 'twi', 'TWI59G0826' => 'twi', 'TWI77G0527' => 'twi', 'TWI81G0150' => 'twi', 'unitig_21.g21018' => 'ugi', 'unitig_26.g9725' => 'ugi', 'unitig_744.g24653' => 'ugi', 'unitig_749.g13778' => 'ugi', 'unitig_899.g15035' => 'ugi', 'vmacro04296' => 'vma', 'vmacro04852' => 'vma', 'vmacro13404' => 'vma', 'vmacro20169' => 'vma', 'vmacro21014' => 'vma', 'VMungo0331G0237' => 'vmu', 'VMungo0331G0706' => 'vmu', 'VMungo0331G1361' => 'vmu', 'VMungo0331G1489' => 'vmu', 'VMungo0540G1037' => 'vmu', 'VMungo0720G2487' => 'vmu', 'VMungo0720G2721' => 'vmu', 'Zm00001eb086860' => 'zma', 'Zm00001eb104760' => 'zma', 'Zm00001eb148220' => 'zma', 'Zm00001eb259030' => 'zma', 'Zm00001eb289590' => 'zma', 'Zm00001eb420150' => 'zma' ), 'gf_id' => 'HOM05D000968', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000968' ), 'data_identifier' => 'HOM05D000968', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000968', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p31690' => 'bna', 'A03p36040' => 'bna', 'A03p53730' => 'bna', 'A04p01410' => 'bna', 'A05p05420' => 'bna', 'A05p39630' => 'bna', 'A05p39640' => 'bna', 'A09p00970' => 'bna', 'A09p53060' => 'bna', 'A10p31890' => 'bna', 'Aa31LG10G15040' => 'aar', 'Aa31LG1G21090' => 'aar', 'Aa31LG1G26900' => 'aar', 'Aa31LG3G1820' => 'aar', 'Aa31LG5G1100' => 'aar', 'Aa31LG6G4740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2265' => 'aag', 'Actinidia07998' => 'ach', 'Actinidia11266' => 'ach', 'Actinidia12682' => 'ach', 'Actinidia26479' => 'ach', 'Actinidia31406' => 'ach', 'Actinidia32437' => 'ach', 'Actinidia38862' => 'ach', 'Ah.05g174230' => 'amhyb', 'Ah.05g179070' => 'amhyb', 'Ah.05g179090' => 'amhyb', 'Ah.12g059950' => 'amhyb', 'AL3G20480' => 'aly', 'AL4G44520' => 'aly', 'AL5G43110' => 'aly', 'AL6G13890' => 'aly', 'AL6G52620' => 'aly', 'AL7G30830' => 'aly', 'Aqoxy1G00899' => 'aox', 'Aqoxy5G04333' => 'aox', 'Aqoxy7G00641' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3IZ0NN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4EF6AW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W9P8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79GA3M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C43NQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFCU6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G95YVJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCHK29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LU1UG8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX91RN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGB4B1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8DA0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9H7JI' => 'arhy', 'AT3G09320' => 'ath', 'AT3G60800' => 'ath', 'AT4G00840' => 'ath', 'AT4G22750' => 'ath', 'AT5G04270' => 'ath', 'ATR0090G003' => 'atr', 'ATR0559G349' => 'atr', 'ATR0680G261' => 'atr', 'ATR0810G048' => 'atr', 'Atru.chr12.831' => 'acertr', 'Atru.chr5.303' => 'acertr', 'Atru.chr5.748' => 'acertr', 'Atru.chr8.1999' => 'acertr', 'Atru.chr9.1436' => 'acertr', 'AUR62004211' => 'cqu', 'AUR62004548' => 'cqu', 'AUR62013637' => 'cqu', 'AUR62022662' => 'cqu', 'AUR62025777' => 'cqu', 'AUR62042386' => 'cqu', 'BcaB01g02310' => 'bca', 'BcaB01g06062' => 'bca', 'BcaB02g08975' => 'bca', 'BcaB02g08980' => 'bca', 'BcaC01g04228' => 'bca', 'BcaC01g06830' => 'bca', 'BcaC02g10186' => 'bca', 'BcaC02g12214' => 'bca', 'BcaC04g24101' => 'bca', 'BcaC05g29520' => 'bca', 'BcaC05g29661' => 'bca', 'BcaC06g32130' => 'bca', 'BcaC06g32131' => 'bca', 'BcaC07g40601' => 'bca', 'BcaC07g42641' => 'bca', 'BcaNung01038' => 'bca', 'BcaNung01676' => 'bca', 'BcaNung02480' => 'bca', 'BcaNung07376' => 'bca', 'BolC3t16146H' => 'bol', 'BolC3t16637H' => 'bol', 'BolC4t22257H' => 'bol', 'BolC4t24728H' => 'bol', 'BolC5t34517H' => 'bol', 'BolC7t45703H' => 'bol', 'BolC8t51166H' => 'bol', 'BolC9t53038H' => 'bol', 'BolC9t60000H' => 'bol', 'BraA01t01345Z' => 'bra', 'BraA01t01346Z' => 'bra', 'BraA01t01348Z' => 'bra', 'BraA03t12347Z' => 'bra', 'BraA03t12775Z' => 'bra', 'BraA03t14439Z' => 'bra', 'BraA04t15860Z' => 'bra', 'BraA05t19511Z' => 'bra', 'BraA05t22746Z' => 'bra', 'BraA09t35767Z' => 'bra', 'BraA09t40732Z' => 'bra', 'BraA10t45233Z' => 'bra', 'C03p38720' => 'bna', 'C03p43680' => 'bna', 'C04p06350' => 'bna', 'C04p31800' => 'bna', 'C05p58680' => 'bna', 'C07p52110' => 'bna', 'C08p35760' => 'bna', 'C09p01050' => 'bna', 'C09p72600' => 'bna', 'CAN.G106.2' => 'can', 'CAN.G1482.1' => 'can', 'CAN.G324.12' => 'can', 'CAN.G388.20' => 'can', 'CAN.G412.7' => 'can', 'CAN.G694.32' => 'can', 'CAN.G92.12' => 'can', 'CANSAT11G2353' => 'cansat', 'CANSAT21G1398' => 'cansat', 'CANSAT56G2456' => 'cansat', 'CANSAT56G3031' => 'cansat', 'CANSAT56G4539' => 'cansat', 'CARHR083680' => 'chi', 'CARHR171190' => 'chi', 'CARHR209010' => 'chi', 'CARHR229680' => 'chi', 'CARHR249490' => 'chi', 'Carub.0003s0844' => 'cru', 'Carub.0005s2755' => 'cru', 'Carub.0006s0322' => 'cru', 'Carub.0006s3586' => 'cru', 'Carub.0007s1855' => 'cru', 'Ca_07808_v3' => 'car', 'Ca_09535_v3' => 'car', 'Ca_10548_v3' => 'car', 'Ca_19913_v3' => 'car', 'Ca_19916_v3' => 'car', 'Ca_19975_v3' => 'car', 'CBR_g22876' => 'cbr', 'CBR_g22879' => 'cbr', 'CBR_g38491' => 'cbr', 'CBR_g54185' => 'cbr', 'CBR_g54190' => 'cbr', 'Cc02_g11020' => 'ccan', 'Cc02_g23920' => 'ccan', 'Cc02_g39860' => 'ccan', 'Cc02_g39870' => 'ccan', 'Cc03_g06760' => 'ccan', 'Cc06_g02450' => 'ccan', 'Cc09_g09450' => 'ccan', 'CDE02G1959' => 'cde', 'CDE04G0600' => 'cde', 'CDE07G1996' => 'cde', 'CDE07G2078' => 'cde', 'CDE11G0611' => 'cde', 'Cfa001683' => 'cfa', 'Cfa001734' => 'cfa', 'Cfa001737' => 'cfa', 'Cfa003751' => 'cfa', 'Cfa012019' => 'cfa', 'Cfa017353' => 'cfa', 'Cfa017732' => 'cfa', 'Cfa022464' => 'cfa', 'Ciclev10012400m.g' => 'ccl', 'Ciclev10021242m.g' => 'ccl', 'Ciclev10021302m.g' => 'ccl', 'Ciclev10021463m.g' => 'ccl', 'Ciclev10032359m.g' => 'ccl', 'CiPaw.01G081000' => 'cil', 'CiPaw.01G262500' => 'cil', 'CiPaw.01G269800' => 'cil', 'CiPaw.02G168400' => 'cil', 'CiPaw.05G119500' => 'cil', 'CiPaw.11G147300' => 'cil', 'ClCG01G003630' => 'cla', 'ClCG05G000510' => 'cla', 'ClCG05G002300' => 'cla', 'ClCG08G007650' => 'cla', 'ClCG10G021250' => 'cla', 'COL.COLO4_06218' => 'col', 'COL.COLO4_12538' => 'col', 'COL.COLO4_14775' => 'col', 'COL.COLO4_23875' => 'col', 'Cpa.g.sc141.16' => 'cpa', 'Cpa.g.sc169.16' => 'cpa', 'Cpa.g.sc244.4' => 'cpa', 'Cpa.g.sc244.5' => 'cpa', 'Cpa.g.sc29.87' => 'cpa', 'Cpa.g.sc53.115' => 'cpa', 'Cre03.g207502' => 'cre', 'Cre06.g277000' => 'cre', 'Cre09.g394050' => 'cre', 'CsaV3_3G007680' => 'csa', 'CsaV3_3G009710' => 'csa', 'CsaV3_3G034790' => 'csa', 'CsaV3_5G003750' => 'csa', 'CsaV3_6G036620' => 'csa', 'CSS0002288' => 'camsi', 'CSS0011250' => 'camsi', 'CSS0021619' => 'camsi', 'CSS0046701' => 'camsi', 'DCAR_006420' => 'dca', 'DCAR_006865' => 'dca', 'DCAR_008558' => 'dca', 'DCAR_028754' => 'dca', 'DCAR_028755' => 'dca', 'Dinv31218' => 'din', 'Dinv32371' => 'din', 'Dinv34250' => 'din', 'Dinv37156' => 'din', 'Dinv43704' => 'din', 'Duzib093G1811' => 'dzi', 'Duzib106G1622' => 'dzi', 'Duzib114G0504' => 'dzi', 'Duzib128G0338' => 'dzi', 'Duzib128G1577' => 'dzi', 'Duzib133G0104' => 'dzi', 'Duzib133G1080' => 'dzi', 'Duzib138G0324' => 'dzi', 'Duzib138G0394' => 'dzi', 'Duzib205G0122' => 'dzi', 'Duzib268G1020' => 'dzi', 'Duzib268G1359' => 'dzi', 'ECA232G3929' => 'eca', 'ECA236G2210' => 'eca', 'ECA236G2287' => 'eca', 'ECA240G4568' => 'eca', 'ECA247G0894' => 'eca', 'EL10Ac1g00200' => 'bvu', 'EL10Ac1g00886' => 'bvu', 'EL10As1g23091' => 'bvu', 'EL10As1g23092' => 'bvu', 'Eucgr.A01284' => 'egr', 'Eucgr.A01285' => 'egr', 'Eucgr.D02456' => 'egr', 'Eucgr.E00018' => 'egr', 'Eucgr.E01439' => 'egr', 'Eucgr.G02859' => 'egr', 'FAN01G0168' => 'fan', 'FAN01G0453' => 'fan', 'FAN01G2761' => 'fan', 'FAN02G1239' => 'fan', 'FAN03G0645' => 'fan', 'FAN03G2707' => 'fan', 'FAN03G2978' => 'fan', 'FAN04G0227' => 'fan', 'FAN06G0091' => 'fan', 'FAN06G1418' => 'fan', 'FAN06G1512' => 'fan', 'FAN06G1986' => 'fan', 'FAN06G2905' => 'fan', 'FAN06G4325' => 'fan', 'FAN08G0033' => 'fan', 'FAN09G0642' => 'fan', 'FAN10G1763' => 'fan', 'FAN10G2026' => 'fan', 'FAN10G2513' => 'fan', 'FAN10G3402' => 'fan', 'FAN10G3564' => 'fan', 'FAN10G3987' => 'fan', 'FAN13G1490' => 'fan', 'FAN14G5857' => 'fan', 'FAN18G1188' => 'fan', 'FvH4_5g00750' => 'fve', 'FvH4_6g13410' => 'fve', 'FvH4_7g11740' => 'fve', 'FvH4_7g17410' => 'fve', 'FvH4_7g18860' => 'fve', 'Glyma.01G099100' => 'gma', 'Glyma.01G142300' => 'gma', 'Glyma.03G025500' => 'gma', 'Glyma.03G069700' => 'gma', 'Glyma.03G260000' => 'gma', 'Glyma.09G269800' => 'gma', 'Glyma.10G208700' => 'gma', 'Glyma.18G220400' => 'gma', 'Glyma.20G182000' => 'gma', 'Gohir.A01G221726' => 'ghi', 'Gohir.A07G134600' => 'ghi', 'Gohir.A07G146000' => 'ghi', 'Gohir.A08G173900' => 'ghi', 'Gohir.A09G194900' => 'ghi', 'Gohir.A10G204100' => 'ghi', 'Gohir.A11G080600' => 'ghi', 'Gohir.A11G327500' => 'ghi', 'Gohir.A12G101800' => 'ghi', 'Gohir.D01G211200' => 'ghi', 'Gohir.D07G139200' => 'ghi', 'Gohir.D07G152100' => 'ghi', 'Gohir.D08G192600' => 'ghi', 'Gohir.D09G189200' => 'ghi', 'Gohir.D10G212000' => 'ghi', 'Gohir.D11G085200' => 'ghi', 'Gohir.D11G346400' => 'ghi', 'Gohir.D12G104800' => 'ghi', 'Gorai.001G151300' => 'gra', 'Gorai.001G174100' => 'gra', 'Gorai.002G257000' => 'gra', 'Gorai.004G202600' => 'gra', 'Gorai.007G090900' => 'gra', 'Gorai.007G376700' => 'gra', 'Gorai.008G114100' => 'gra', 'Gorai.011G237900' => 'gra', 'GSVIVG01005450001' => 'vvi', 'GSVIVG01016232001' => 'vvi', 'GSVIVG01026157001' => 'vvi', 'GSVIVG01027419001' => 'vvi', 'GSVIVG01027631001' => 'vvi', 'GSVIVG01034143001' => 'vvi', 'HanXRQChr03g0093921' => 'han', 'HanXRQChr04g0120001' => 'han', 'HanXRQChr04g0122561' => 'han', 'HanXRQChr09g0246851' => 'han', 'HanXRQChr10g0293311' => 'han', 'HanXRQChr13g0425231' => 'han', 'HanXRQChr16g0532571' => 'han', 'Haze_09050' => 'cav', 'Haze_15715' => 'cav', 'Haze_15716' => 'cav', 'Haze_16803' => 'cav', 'Haze_16850' => 'cav', 'Hma1.2p1_0301F.1_g118655' => 'hma', 'Hma1.2p1_0309F.1_g120590' => 'hma', 'Hma1.2p1_0936F.1_g238900' => 'hma', 'Hma1.2p1_3552F.1_g336740' => 'hma', 'HPP92_003520' => 'vpl', 'HPP92_006628' => 'vpl', 'HPP92_006645' => 'vpl', 'HPP92_014669' => 'vpl', 'HPP92_015077' => 'vpl', 'Hund16742' => 'sun', 'Hund17022' => 'sun', 'Lalb_Chr02g0152131' => 'lal', 'Lalb_Chr05g0225371' => 'lal', 'Lalb_Chr07g0189841' => 'lal', 'Lalb_Chr07g0192961' => 'lal', 'Lalb_Chr12g0208221' => 'lal', 'Lalb_Chr13g0291211' => 'lal', 'Lalb_Chr13g0291781' => 'lal', 'Lalb_Chr18g0044651' => 'lal', 'Lalb_Chr21g0313731' => 'lal', 'Lj1g0022533' => 'lja', 'Lj2A18T50' => 'lonja', 'Lj2A92G93' => 'lonja', 'Lj3A965T73' => 'lonja', 'Lj3g0000673' => 'lja', 'Lj3g0002666' => 'lja', 'Lj4g0016985' => 'lja', 'Lj5g0003625' => 'lja', 'Lj7A529G36' => 'lonja', 'Lj9A569T49' => 'lonja', 'Lj9A604T63' => 'lonja', 'Lsat_1_v5_gn_3_132060' => 'lsa', 'Lsat_1_v5_gn_4_68941' => 'lsa', 'Lsat_1_v5_gn_5_95580' => 'lsa', 'Lsat_1_v5_gn_7_161' => 'lsa', 'Lsat_1_v5_gn_7_7041' => 'lsa', 'Lsat_1_v5_gn_9_33481' => 'lsa', 'Lsat_1_v5_gn_9_68260' => 'lsa', 'Manes.01G073100' => 'mes', 'Manes.01G266300' => 'mes', 'Manes.02G033300' => 'mes', 'Manes.05G017900' => 'mes', 'Manes.05G046100' => 'mes', 'Manes.08G080900' => 'mes', 'Manes.10G049400' => 'mes', 'Mapoly0009s0186' => 'mpo', 'Mapoly0036s0118' => 'mpo', 'Mapoly0101s0046' => 'mpo', 'MBI04_g30218_MAGBIO' => 'mbi', 'MBI04_g35564_MAGBIO' => 'mbi', 'MBI12_g34011_MAGBIO' => 'mbi', 'MBI14_g04655_MAGBIO' => 'mbi', 'MCO07G653' => 'mco', 'MCO10G173' => 'mco', 'MD01G1087100' => 'mdo', 'MD01G1104200' => 'mdo', 'MD02G1205100' => 'mdo', 'MD04G1079200' => 'mdo', 'MD04G1131400' => 'mdo', 'MD07G1121600' => 'mdo', 'MD07G1157300' => 'mdo', 'MD07G1171000' => 'mdo', 'MD12G1144500' => 'mdo', 'Medtr1g094610' => 'mtr', 'Medtr4g021795' => 'mtr', 'Medtr4g023760' => 'mtr', 'Medtr7g118050' => 'mtr', 'MELO3C005582.2' => 'cme', 'MELO3C005989.2' => 'cme', 'MELO3C006192.2' => 'cme', 'MELO3C009248.2' => 'cme', 'MELO3C019817.2' => 'cme', 'Migut.B01625' => 'egut', 'Migut.B01915' => 'egut', 'Migut.F01721' => 'egut', 'Migut.J00314' => 'egut', 'MSTRG.20742' => 'ama', 'MSTRG.8134' => 'ama', 'Nitab4.5_0000096g0010' => 'nta', 'Nitab4.5_0000202g0030' => 'nta', 'Nitab4.5_0000216g0370' => 'nta', 'Nitab4.5_0000457g0230' => 'nta', 'Nitab4.5_0001702g0170' => 'nta', 'Nitab4.5_0003607g0010' => 'nta', 'Nitab4.5_0004917g0020' => 'nta', 'Nitab4.5_0007059g0010' => 'nta', 'Nitab4.5_0007184g0010' => 'nta', 'Nitab4.5_0007346g0020' => 'nta', 'Nn1g00410' => 'nnu', 'Nn1g01252' => 'nnu', 'Nn2g11168' => 'nnu', 'Nn2g13403' => 'nnu', 'Nn2g13760' => 'nnu', 'Nn4g26380' => 'nnu', 'Oeu000806.2' => 'oeu', 'Oeu005788.1' => 'oeu', 'Oeu006900.3' => 'oeu', 'Oeu007797.1' => 'oeu', 'Oeu011932.1' => 'oeu', 'Oeu022739.1' => 'oeu', 'Oeu037918.1' => 'oeu', 'Oeu055490.2' => 'oeu', 'Os01g0844400' => 'osa', 'Os02g0819100' => 'osa', 'Os03g0804300' => 'osa', 'Os05g0458000' => 'osa', 'Os07g0467800' => 'osa', 'Os12g0602200' => 'osa', 'Peaxi162Scf00013g03444' => 'pax', 'Peaxi162Scf00094g01120' => 'pax', 'Peaxi162Scf00191g01211' => 'pax', 'Peaxi162Scf00238g01110' => 'pax', 'Peaxi162Scf00330g00719' => 'pax', 'Peaxi162Scf00627g00018' => 'pax', 'PGR031G2686' => 'pgr', 'PGR042G0809' => 'pgr', 'PGR142G0193' => 'pgr', 'PGSC0003DMG400011066' => 'stu', 'PGSC0003DMG400012041' => 'stu', 'PGSC0003DMG400013678' => 'stu', 'PGSC0003DMG400023477' => 'stu', 'PGSC0003DMG400025956' => 'stu', 'PGSC0003DMG401019151' => 'stu', 'Phvul.006G116400' => 'pvu', 'Phvul.007G097300' => 'pvu', 'Phvul.010G015000' => 'pvu', 'Phvul.010G083900' => 'pvu', 'Potri.001G117100' => 'ptr', 'Potri.002G147300' => 'ptr', 'Potri.003G115600' => 'ptr', 'Potri.006G087400' => 'ptr', 'Potri.010G226100' => 'ptr', 'Potri.014G069200' => 'ptr', 'Potri.014G104000' => 'ptr', 'Potri.016G100200' => 'ptr', 'Pp3c10_20450' => 'ppa', 'Pp3c1_42400' => 'ppa', 'Pp3c3_24390' => 'ppa', 'Pp3c3_2860' => 'ppa', 'PRCOL_00003193' => 'pco', 'Prupe.2G144500' => 'ppe', 'Prupe.2G195700' => 'ppe', 'Prupe.2G209800' => 'ppe', 'Prupe.5G080000' => 'ppe', 'Prupe.6G257900' => 'ppe', 'Psat3g001160' => 'psa', 'Psat6g181880' => 'psa', 'Psat7g233720' => 'psa', 'PSO063G7587' => 'pso', 'PSO339G2145' => 'pso', 'PSO339G3369' => 'pso', 'PSO478G2747' => 'pso', 'PSO513G0140' => 'pso', 'PSO782G1614' => 'pso', 'PSO782G4889' => 'pso', 'PSO782G5485' => 'pso', 'PSO801G0241' => 'pso', 'QL07p048854' => 'qlo', 'QL08p046745' => 'qlo', 'QL08p052606' => 'qlo', 'QL08p053414' => 'qlo', 'QL08p054868' => 'qlo', 'RcHm_v2.0_Chr1g0350251' => 'rch', 'RcHm_v2.0_Chr1g0360851' => 'rch', 'RcHm_v2.0_Chr1g0362791' => 'rch', 'RcHm_v2.0_Chr3g0466281' => 'rch', 'RcHm_v2.0_Chr7g0201481' => 'rch', 'Rhsim01G0148600' => 'rsi', 'Rhsim05G0194400' => 'rsi', 'Rhsim07G0000700' => 'rsi', 'Rhsim07G0000800' => 'rsi', 'Rhsim07G0027900' => 'rsi', 'Rhsim09G0149500' => 'rsi', 'RhsimUnG0186900' => 'rsi', 'Sabra01G0089900' => 'sbr', 'Sabra02G0114700' => 'sbr', 'Sabra02G0116300' => 'sbr', 'Sabra03G0080100' => 'sbr', 'Sabra08G0024300' => 'sbr', 'Sabra10G0174300' => 'sbr', 'Sabra14G0048900' => 'sbr', 'Sabra14G0076500' => 'sbr', 'SalBow5G2513' => 'sbo', 'Sc01g0002300' => 'sci', 'Sc01g0004450' => 'sci', 'Sc06g0001680' => 'sci', 'Sc23g0003580' => 'sci', 'Sed0000913' => 'sed', 'Sed0001655' => 'sed', 'Sed0007745' => 'sed', 'Sed0010951' => 'sed', 'Sed0017599' => 'sed', 'Sed0021405' => 'sed', 'Sed0022810' => 'sed', 'SEGI_07099' => 'sgi', 'SEGI_11931' => 'sgi', 'SEGI_13187' => 'sgi', 'SEGI_29958' => 'sgi', 'SEGI_36351' => 'sgi', 'SGA_v2.0_scaffold126G33770' => 'sas', 'SGA_v2.0_scaffold153G37003' => 'sas', 'SGA_v2.0_scaffold2G01359' => 'sas', 'SGA_v2.0_scaffold5G03064' => 'sas', 'SGA_v2.0_scaffold95G28903' => 'sas', 'SHI12701' => 'shi', 'SHI26410' => 'shi', 'SHI38997' => 'shi', 'SHI53759' => 'shi', 'SHI53886' => 'shi', 'SHI54714' => 'shi', 'SMO011G0041' => 'smo', 'SMO146G0251' => 'smo', 'SMO160G0004' => 'smo', 'SMO174G0057' => 'smo', 'SMO244G0089' => 'smo', 'SMO296G0011' => 'smo', 'Solyc01g091280.3' => 'sly', 'Solyc05g047610.3' => 'sly', 'Solyc05g047640.3' => 'sly', 'Solyc05g055630.3' => 'sly', 'Solyc10g018160.2' => 'sly', 'Solyc10g084820.2' => 'sly', 'Solyc10g086565.2' => 'sly', 'Sopen01g037030' => 'spe', 'Sopen05g027920' => 'spe', 'Sopen05g034070' => 'spe', 'Sopen10g007260' => 'spe', 'Sopen10g034260' => 'spe', 'Sopen10g035950' => 'spe', 'Sp3g07710' => 'spa', 'Sp4g27420' => 'spa', 'Sp5g02450' => 'spa', 'Sp6g01280' => 'spa', 'Sp6g38480' => 'spa', 'Sp7g20780' => 'spa', 'TAR374G1413' => 'tar', 'TAR623G1777' => 'tar', 'TAR629G2370' => 'tar', 'TAR633G1759' => 'tar', 'TAR636G3387' => 'tar', 'THA.LOC104802447' => 'tha', 'THA.LOC104813916' => 'tha', 'THA.LOC104816423' => 'tha', 'THA.LOC104817246' => 'tha', 'THA.LOC104825895' => 'tha', 'Thecc.01G335200' => 'tca', 'Thecc.01G377400' => 'tca', 'Thecc.03G262200' => 'tca', 'Thecc.05G036800' => 'tca', 'Thecc.10G080500' => 'tca', 'Thecc.10G080800' => 'tca', 'Thhalv10001560m.g' => 'esa', 'Thhalv10006120m.g' => 'esa', 'Thhalv10014375m.g' => 'esa', 'Thhalv10021264m.g' => 'esa', 'Thhalv10028856m.g' => 'esa', 'TPR.G1914' => 'tpr', 'TPR.G4757' => 'tpr', 'TPR.G5595' => 'tpr', 'TWI14G0952' => 'twi', 'TWI14G1307' => 'twi', 'TWI38G2143' => 'twi', 'TWI59G0826' => 'twi', 'TWI77G0527' => 'twi', 'TWI81G0150' => 'twi', 'unitig_21.g21018' => 'ugi', 'unitig_26.g9725' => 'ugi', 'unitig_744.g24653' => 'ugi', 'unitig_749.g13778' => 'ugi', 'unitig_899.g15035' => 'ugi', 'vmacro04296' => 'vma', 'vmacro04852' => 'vma', 'vmacro13404' => 'vma', 'vmacro20169' => 'vma', 'vmacro21014' => 'vma', 'VMungo0331G0237' => 'vmu', 'VMungo0331G0706' => 'vmu', 'VMungo0331G1361' => 'vmu', 'VMungo0331G1489' => 'vmu', 'VMungo0540G1037' => 'vmu', 'VMungo0720G2487' => 'vmu', 'VMungo0720G2721' => 'vmu', 'Zm00001eb086860' => 'zma', 'Zm00001eb104760' => 'zma', 'Zm00001eb148220' => 'zma', 'Zm00001eb259030' => 'zma', 'Zm00001eb289590' => 'zma', 'Zm00001eb420150' => 'zma' ) $gf_id = 'HOM05D000968' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000968' ) $data_identifier = 'HOM05D000968' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 19, 'bol' => (int) 9, 'bra' => (int) 12, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 5, 'ccan' => (int) 7, 'cde' => (int) 5, 'cfa' => (int) 8, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 4, 'dca' => (int) 5, 'din' => (int) 5, 'dzi' => (int) 12, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 25, 'fve' => (int) 5, 'gma' => (int) 9, 'ghi' => (int) 18, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 7, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 5, 'sun' => (int) 2, 'lal' => (int) 9, 'lja' => (int) 5, 'lonja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 9, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 2, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 3, 'stu' => (int) 6, 'pvu' => (int) 4, 'ptr' => (int) 8, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 3, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 1, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 5, 'sas' => (int) 5, 'shi' => (int) 6, 'smo' => (int) 6, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 3, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420150' $species_info = array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ) $local_species = 'vmu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000968', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p31690' => 'bna', 'A03p36040' => 'bna', 'A03p53730' => 'bna', 'A04p01410' => 'bna', 'A05p05420' => 'bna', 'A05p39630' => 'bna', 'A05p39640' => 'bna', 'A09p00970' => 'bna', 'A09p53060' => 'bna', 'A10p31890' => 'bna', 'Aa31LG10G15040' => 'aar', 'Aa31LG1G21090' => 'aar', 'Aa31LG1G26900' => 'aar', 'Aa31LG3G1820' => 'aar', 'Aa31LG5G1100' => 'aar', 'Aa31LG6G4740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2265' => 'aag', 'Actinidia07998' => 'ach', 'Actinidia11266' => 'ach', 'Actinidia12682' => 'ach', 'Actinidia26479' => 'ach', 'Actinidia31406' => 'ach', 'Actinidia32437' => 'ach', 'Actinidia38862' => 'ach', 'Ah.05g174230' => 'amhyb', 'Ah.05g179070' => 'amhyb', 'Ah.05g179090' => 'amhyb', 'Ah.12g059950' => 'amhyb', 'AL3G20480' => 'aly', 'AL4G44520' => 'aly', 'AL5G43110' => 'aly', 'AL6G13890' => 'aly', 'AL6G52620' => 'aly', 'AL7G30830' => 'aly', 'Aqoxy1G00899' => 'aox', 'Aqoxy5G04333' => 'aox', 'Aqoxy7G00641' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3IZ0NN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4EF6AW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W9P8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79GA3M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C43NQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFCU6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G95YVJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCHK29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LU1UG8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX91RN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGB4B1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8DA0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9H7JI' => 'arhy', 'AT3G09320' => 'ath', 'AT3G60800' => 'ath', 'AT4G00840' => 'ath', 'AT4G22750' => 'ath', 'AT5G04270' => 'ath', 'ATR0090G003' => 'atr', 'ATR0559G349' => 'atr', 'ATR0680G261' => 'atr', 'ATR0810G048' => 'atr', 'Atru.chr12.831' => 'acertr', 'Atru.chr5.303' => 'acertr', 'Atru.chr5.748' => 'acertr', 'Atru.chr8.1999' => 'acertr', 'Atru.chr9.1436' => 'acertr', 'AUR62004211' => 'cqu', 'AUR62004548' => 'cqu', 'AUR62013637' => 'cqu', 'AUR62022662' => 'cqu', 'AUR62025777' => 'cqu', 'AUR62042386' => 'cqu', 'BcaB01g02310' => 'bca', 'BcaB01g06062' => 'bca', 'BcaB02g08975' => 'bca', 'BcaB02g08980' => 'bca', 'BcaC01g04228' => 'bca', 'BcaC01g06830' => 'bca', 'BcaC02g10186' => 'bca', 'BcaC02g12214' => 'bca', 'BcaC04g24101' => 'bca', 'BcaC05g29520' => 'bca', 'BcaC05g29661' => 'bca', 'BcaC06g32130' => 'bca', 'BcaC06g32131' => 'bca', 'BcaC07g40601' => 'bca', 'BcaC07g42641' => 'bca', 'BcaNung01038' => 'bca', 'BcaNung01676' => 'bca', 'BcaNung02480' => 'bca', 'BcaNung07376' => 'bca', 'BolC3t16146H' => 'bol', 'BolC3t16637H' => 'bol', 'BolC4t22257H' => 'bol', 'BolC4t24728H' => 'bol', 'BolC5t34517H' => 'bol', 'BolC7t45703H' => 'bol', 'BolC8t51166H' => 'bol', 'BolC9t53038H' => 'bol', 'BolC9t60000H' => 'bol', 'BraA01t01345Z' => 'bra', 'BraA01t01346Z' => 'bra', 'BraA01t01348Z' => 'bra', 'BraA03t12347Z' => 'bra', 'BraA03t12775Z' => 'bra', 'BraA03t14439Z' => 'bra', 'BraA04t15860Z' => 'bra', 'BraA05t19511Z' => 'bra', 'BraA05t22746Z' => 'bra', 'BraA09t35767Z' => 'bra', 'BraA09t40732Z' => 'bra', 'BraA10t45233Z' => 'bra', 'C03p38720' => 'bna', 'C03p43680' => 'bna', 'C04p06350' => 'bna', 'C04p31800' => 'bna', 'C05p58680' => 'bna', 'C07p52110' => 'bna', 'C08p35760' => 'bna', 'C09p01050' => 'bna', 'C09p72600' => 'bna', 'CAN.G106.2' => 'can', 'CAN.G1482.1' => 'can', 'CAN.G324.12' => 'can', 'CAN.G388.20' => 'can', 'CAN.G412.7' => 'can', 'CAN.G694.32' => 'can', 'CAN.G92.12' => 'can', 'CANSAT11G2353' => 'cansat', 'CANSAT21G1398' => 'cansat', 'CANSAT56G2456' => 'cansat', 'CANSAT56G3031' => 'cansat', 'CANSAT56G4539' => 'cansat', 'CARHR083680' => 'chi', 'CARHR171190' => 'chi', 'CARHR209010' => 'chi', 'CARHR229680' => 'chi', 'CARHR249490' => 'chi', 'Carub.0003s0844' => 'cru', 'Carub.0005s2755' => 'cru', 'Carub.0006s0322' => 'cru', 'Carub.0006s3586' => 'cru', 'Carub.0007s1855' => 'cru', 'Ca_07808_v3' => 'car', 'Ca_09535_v3' => 'car', 'Ca_10548_v3' => 'car', 'Ca_19913_v3' => 'car', 'Ca_19916_v3' => 'car', 'Ca_19975_v3' => 'car', 'CBR_g22876' => 'cbr', 'CBR_g22879' => 'cbr', 'CBR_g38491' => 'cbr', 'CBR_g54185' => 'cbr', 'CBR_g54190' => 'cbr', 'Cc02_g11020' => 'ccan', 'Cc02_g23920' => 'ccan', 'Cc02_g39860' => 'ccan', 'Cc02_g39870' => 'ccan', 'Cc03_g06760' => 'ccan', 'Cc06_g02450' => 'ccan', 'Cc09_g09450' => 'ccan', 'CDE02G1959' => 'cde', 'CDE04G0600' => 'cde', 'CDE07G1996' => 'cde', 'CDE07G2078' => 'cde', 'CDE11G0611' => 'cde', 'Cfa001683' => 'cfa', 'Cfa001734' => 'cfa', 'Cfa001737' => 'cfa', 'Cfa003751' => 'cfa', 'Cfa012019' => 'cfa', 'Cfa017353' => 'cfa', 'Cfa017732' => 'cfa', 'Cfa022464' => 'cfa', 'Ciclev10012400m.g' => 'ccl', 'Ciclev10021242m.g' => 'ccl', 'Ciclev10021302m.g' => 'ccl', 'Ciclev10021463m.g' => 'ccl', 'Ciclev10032359m.g' => 'ccl', 'CiPaw.01G081000' => 'cil', 'CiPaw.01G262500' => 'cil', 'CiPaw.01G269800' => 'cil', 'CiPaw.02G168400' => 'cil', 'CiPaw.05G119500' => 'cil', 'CiPaw.11G147300' => 'cil', 'ClCG01G003630' => 'cla', 'ClCG05G000510' => 'cla', 'ClCG05G002300' => 'cla', 'ClCG08G007650' => 'cla', 'ClCG10G021250' => 'cla', 'COL.COLO4_06218' => 'col', 'COL.COLO4_12538' => 'col', 'COL.COLO4_14775' => 'col', 'COL.COLO4_23875' => 'col', 'Cpa.g.sc141.16' => 'cpa', 'Cpa.g.sc169.16' => 'cpa', 'Cpa.g.sc244.4' => 'cpa', 'Cpa.g.sc244.5' => 'cpa', 'Cpa.g.sc29.87' => 'cpa', 'Cpa.g.sc53.115' => 'cpa', 'Cre03.g207502' => 'cre', 'Cre06.g277000' => 'cre', 'Cre09.g394050' => 'cre', 'CsaV3_3G007680' => 'csa', 'CsaV3_3G009710' => 'csa', 'CsaV3_3G034790' => 'csa', 'CsaV3_5G003750' => 'csa', 'CsaV3_6G036620' => 'csa', 'CSS0002288' => 'camsi', 'CSS0011250' => 'camsi', 'CSS0021619' => 'camsi', 'CSS0046701' => 'camsi', 'DCAR_006420' => 'dca', 'DCAR_006865' => 'dca', 'DCAR_008558' => 'dca', 'DCAR_028754' => 'dca', 'DCAR_028755' => 'dca', 'Dinv31218' => 'din', 'Dinv32371' => 'din', 'Dinv34250' => 'din', 'Dinv37156' => 'din', 'Dinv43704' => 'din', 'Duzib093G1811' => 'dzi', 'Duzib106G1622' => 'dzi', 'Duzib114G0504' => 'dzi', 'Duzib128G0338' => 'dzi', 'Duzib128G1577' => 'dzi', 'Duzib133G0104' => 'dzi', 'Duzib133G1080' => 'dzi', 'Duzib138G0324' => 'dzi', 'Duzib138G0394' => 'dzi', 'Duzib205G0122' => 'dzi', 'Duzib268G1020' => 'dzi', 'Duzib268G1359' => 'dzi', 'ECA232G3929' => 'eca', 'ECA236G2210' => 'eca', 'ECA236G2287' => 'eca', 'ECA240G4568' => 'eca', 'ECA247G0894' => 'eca', 'EL10Ac1g00200' => 'bvu', 'EL10Ac1g00886' => 'bvu', 'EL10As1g23091' => 'bvu', 'EL10As1g23092' => 'bvu', 'Eucgr.A01284' => 'egr', 'Eucgr.A01285' => 'egr', 'Eucgr.D02456' => 'egr', 'Eucgr.E00018' => 'egr', 'Eucgr.E01439' => 'egr', 'Eucgr.G02859' => 'egr', 'FAN01G0168' => 'fan', 'FAN01G0453' => 'fan', 'FAN01G2761' => 'fan', 'FAN02G1239' => 'fan', 'FAN03G0645' => 'fan', 'FAN03G2707' => 'fan', 'FAN03G2978' => 'fan', 'FAN04G0227' => 'fan', 'FAN06G0091' => 'fan', 'FAN06G1418' => 'fan', 'FAN06G1512' => 'fan', 'FAN06G1986' => 'fan', 'FAN06G2905' => 'fan', 'FAN06G4325' => 'fan', 'FAN08G0033' => 'fan', 'FAN09G0642' => 'fan', 'FAN10G1763' => 'fan', 'FAN10G2026' => 'fan', 'FAN10G2513' => 'fan', 'FAN10G3402' => 'fan', 'FAN10G3564' => 'fan', 'FAN10G3987' => 'fan', 'FAN13G1490' => 'fan', 'FAN14G5857' => 'fan', 'FAN18G1188' => 'fan', 'FvH4_5g00750' => 'fve', 'FvH4_6g13410' => 'fve', 'FvH4_7g11740' => 'fve', 'FvH4_7g17410' => 'fve', 'FvH4_7g18860' => 'fve', 'Glyma.01G099100' => 'gma', 'Glyma.01G142300' => 'gma', 'Glyma.03G025500' => 'gma', 'Glyma.03G069700' => 'gma', 'Glyma.03G260000' => 'gma', 'Glyma.09G269800' => 'gma', 'Glyma.10G208700' => 'gma', 'Glyma.18G220400' => 'gma', 'Glyma.20G182000' => 'gma', 'Gohir.A01G221726' => 'ghi', 'Gohir.A07G134600' => 'ghi', 'Gohir.A07G146000' => 'ghi', 'Gohir.A08G173900' => 'ghi', 'Gohir.A09G194900' => 'ghi', 'Gohir.A10G204100' => 'ghi', 'Gohir.A11G080600' => 'ghi', 'Gohir.A11G327500' => 'ghi', 'Gohir.A12G101800' => 'ghi', 'Gohir.D01G211200' => 'ghi', 'Gohir.D07G139200' => 'ghi', 'Gohir.D07G152100' => 'ghi', 'Gohir.D08G192600' => 'ghi', 'Gohir.D09G189200' => 'ghi', 'Gohir.D10G212000' => 'ghi', 'Gohir.D11G085200' => 'ghi', 'Gohir.D11G346400' => 'ghi', 'Gohir.D12G104800' => 'ghi', 'Gorai.001G151300' => 'gra', 'Gorai.001G174100' => 'gra', 'Gorai.002G257000' => 'gra', 'Gorai.004G202600' => 'gra', 'Gorai.007G090900' => 'gra', 'Gorai.007G376700' => 'gra', 'Gorai.008G114100' => 'gra', 'Gorai.011G237900' => 'gra', 'GSVIVG01005450001' => 'vvi', 'GSVIVG01016232001' => 'vvi', 'GSVIVG01026157001' => 'vvi', 'GSVIVG01027419001' => 'vvi', 'GSVIVG01027631001' => 'vvi', 'GSVIVG01034143001' => 'vvi', 'HanXRQChr03g0093921' => 'han', 'HanXRQChr04g0120001' => 'han', 'HanXRQChr04g0122561' => 'han', 'HanXRQChr09g0246851' => 'han', 'HanXRQChr10g0293311' => 'han', 'HanXRQChr13g0425231' => 'han', 'HanXRQChr16g0532571' => 'han', 'Haze_09050' => 'cav', 'Haze_15715' => 'cav', 'Haze_15716' => 'cav', 'Haze_16803' => 'cav', 'Haze_16850' => 'cav', 'Hma1.2p1_0301F.1_g118655' => 'hma', 'Hma1.2p1_0309F.1_g120590' => 'hma', 'Hma1.2p1_0936F.1_g238900' => 'hma', 'Hma1.2p1_3552F.1_g336740' => 'hma', 'HPP92_003520' => 'vpl', 'HPP92_006628' => 'vpl', 'HPP92_006645' => 'vpl', 'HPP92_014669' => 'vpl', 'HPP92_015077' => 'vpl', 'Hund16742' => 'sun', 'Hund17022' => 'sun', 'Lalb_Chr02g0152131' => 'lal', 'Lalb_Chr05g0225371' => 'lal', 'Lalb_Chr07g0189841' => 'lal', 'Lalb_Chr07g0192961' => 'lal', 'Lalb_Chr12g0208221' => 'lal', 'Lalb_Chr13g0291211' => 'lal', 'Lalb_Chr13g0291781' => 'lal', 'Lalb_Chr18g0044651' => 'lal', 'Lalb_Chr21g0313731' => 'lal', 'Lj1g0022533' => 'lja', 'Lj2A18T50' => 'lonja', 'Lj2A92G93' => 'lonja', 'Lj3A965T73' => 'lonja', 'Lj3g0000673' => 'lja', 'Lj3g0002666' => 'lja', 'Lj4g0016985' => 'lja', 'Lj5g0003625' => 'lja', 'Lj7A529G36' => 'lonja', 'Lj9A569T49' => 'lonja', 'Lj9A604T63' => 'lonja', 'Lsat_1_v5_gn_3_132060' => 'lsa', 'Lsat_1_v5_gn_4_68941' => 'lsa', 'Lsat_1_v5_gn_5_95580' => 'lsa', 'Lsat_1_v5_gn_7_161' => 'lsa', 'Lsat_1_v5_gn_7_7041' => 'lsa', 'Lsat_1_v5_gn_9_33481' => 'lsa', 'Lsat_1_v5_gn_9_68260' => 'lsa', 'Manes.01G073100' => 'mes', 'Manes.01G266300' => 'mes', 'Manes.02G033300' => 'mes', 'Manes.05G017900' => 'mes', 'Manes.05G046100' => 'mes', 'Manes.08G080900' => 'mes', 'Manes.10G049400' => 'mes', 'Mapoly0009s0186' => 'mpo', 'Mapoly0036s0118' => 'mpo', 'Mapoly0101s0046' => 'mpo', 'MBI04_g30218_MAGBIO' => 'mbi', 'MBI04_g35564_MAGBIO' => 'mbi', 'MBI12_g34011_MAGBIO' => 'mbi', 'MBI14_g04655_MAGBIO' => 'mbi', 'MCO07G653' => 'mco', 'MCO10G173' => 'mco', 'MD01G1087100' => 'mdo', 'MD01G1104200' => 'mdo', 'MD02G1205100' => 'mdo', 'MD04G1079200' => 'mdo', 'MD04G1131400' => 'mdo', 'MD07G1121600' => 'mdo', 'MD07G1157300' => 'mdo', 'MD07G1171000' => 'mdo', 'MD12G1144500' => 'mdo', 'Medtr1g094610' => 'mtr', 'Medtr4g021795' => 'mtr', 'Medtr4g023760' => 'mtr', 'Medtr7g118050' => 'mtr', 'MELO3C005582.2' => 'cme', 'MELO3C005989.2' => 'cme', 'MELO3C006192.2' => 'cme', 'MELO3C009248.2' => 'cme', 'MELO3C019817.2' => 'cme', 'Migut.B01625' => 'egut', 'Migut.B01915' => 'egut', 'Migut.F01721' => 'egut', 'Migut.J00314' => 'egut', 'MSTRG.20742' => 'ama', 'MSTRG.8134' => 'ama', 'Nitab4.5_0000096g0010' => 'nta', 'Nitab4.5_0000202g0030' => 'nta', 'Nitab4.5_0000216g0370' => 'nta', 'Nitab4.5_0000457g0230' => 'nta', 'Nitab4.5_0001702g0170' => 'nta', 'Nitab4.5_0003607g0010' => 'nta', 'Nitab4.5_0004917g0020' => 'nta', 'Nitab4.5_0007059g0010' => 'nta', 'Nitab4.5_0007184g0010' => 'nta', 'Nitab4.5_0007346g0020' => 'nta', 'Nn1g00410' => 'nnu', 'Nn1g01252' => 'nnu', 'Nn2g11168' => 'nnu', 'Nn2g13403' => 'nnu', 'Nn2g13760' => 'nnu', 'Nn4g26380' => 'nnu', 'Oeu000806.2' => 'oeu', 'Oeu005788.1' => 'oeu', 'Oeu006900.3' => 'oeu', 'Oeu007797.1' => 'oeu', 'Oeu011932.1' => 'oeu', 'Oeu022739.1' => 'oeu', 'Oeu037918.1' => 'oeu', 'Oeu055490.2' => 'oeu', 'Os01g0844400' => 'osa', 'Os02g0819100' => 'osa', 'Os03g0804300' => 'osa', 'Os05g0458000' => 'osa', 'Os07g0467800' => 'osa', 'Os12g0602200' => 'osa', 'Peaxi162Scf00013g03444' => 'pax', 'Peaxi162Scf00094g01120' => 'pax', 'Peaxi162Scf00191g01211' => 'pax', 'Peaxi162Scf00238g01110' => 'pax', 'Peaxi162Scf00330g00719' => 'pax', 'Peaxi162Scf00627g00018' => 'pax', 'PGR031G2686' => 'pgr', 'PGR042G0809' => 'pgr', 'PGR142G0193' => 'pgr', 'PGSC0003DMG400011066' => 'stu', 'PGSC0003DMG400012041' => 'stu', 'PGSC0003DMG400013678' => 'stu', 'PGSC0003DMG400023477' => 'stu', 'PGSC0003DMG400025956' => 'stu', 'PGSC0003DMG401019151' => 'stu', 'Phvul.006G116400' => 'pvu', 'Phvul.007G097300' => 'pvu', 'Phvul.010G015000' => 'pvu', 'Phvul.010G083900' => 'pvu', 'Potri.001G117100' => 'ptr', 'Potri.002G147300' => 'ptr', 'Potri.003G115600' => 'ptr', 'Potri.006G087400' => 'ptr', 'Potri.010G226100' => 'ptr', 'Potri.014G069200' => 'ptr', 'Potri.014G104000' => 'ptr', 'Potri.016G100200' => 'ptr', 'Pp3c10_20450' => 'ppa', 'Pp3c1_42400' => 'ppa', 'Pp3c3_24390' => 'ppa', 'Pp3c3_2860' => 'ppa', 'PRCOL_00003193' => 'pco', 'Prupe.2G144500' => 'ppe', 'Prupe.2G195700' => 'ppe', 'Prupe.2G209800' => 'ppe', 'Prupe.5G080000' => 'ppe', 'Prupe.6G257900' => 'ppe', 'Psat3g001160' => 'psa', 'Psat6g181880' => 'psa', 'Psat7g233720' => 'psa', 'PSO063G7587' => 'pso', 'PSO339G2145' => 'pso', 'PSO339G3369' => 'pso', 'PSO478G2747' => 'pso', 'PSO513G0140' => 'pso', 'PSO782G1614' => 'pso', 'PSO782G4889' => 'pso', 'PSO782G5485' => 'pso', 'PSO801G0241' => 'pso', 'QL07p048854' => 'qlo', 'QL08p046745' => 'qlo', 'QL08p052606' => 'qlo', 'QL08p053414' => 'qlo', 'QL08p054868' => 'qlo', 'RcHm_v2.0_Chr1g0350251' => 'rch', 'RcHm_v2.0_Chr1g0360851' => 'rch', 'RcHm_v2.0_Chr1g0362791' => 'rch', 'RcHm_v2.0_Chr3g0466281' => 'rch', 'RcHm_v2.0_Chr7g0201481' => 'rch', 'Rhsim01G0148600' => 'rsi', 'Rhsim05G0194400' => 'rsi', 'Rhsim07G0000700' => 'rsi', 'Rhsim07G0000800' => 'rsi', 'Rhsim07G0027900' => 'rsi', 'Rhsim09G0149500' => 'rsi', 'RhsimUnG0186900' => 'rsi', 'Sabra01G0089900' => 'sbr', 'Sabra02G0114700' => 'sbr', 'Sabra02G0116300' => 'sbr', 'Sabra03G0080100' => 'sbr', 'Sabra08G0024300' => 'sbr', 'Sabra10G0174300' => 'sbr', 'Sabra14G0048900' => 'sbr', 'Sabra14G0076500' => 'sbr', 'SalBow5G2513' => 'sbo', 'Sc01g0002300' => 'sci', 'Sc01g0004450' => 'sci', 'Sc06g0001680' => 'sci', 'Sc23g0003580' => 'sci', 'Sed0000913' => 'sed', 'Sed0001655' => 'sed', 'Sed0007745' => 'sed', 'Sed0010951' => 'sed', 'Sed0017599' => 'sed', 'Sed0021405' => 'sed', 'Sed0022810' => 'sed', 'SEGI_07099' => 'sgi', 'SEGI_11931' => 'sgi', 'SEGI_13187' => 'sgi', 'SEGI_29958' => 'sgi', 'SEGI_36351' => 'sgi', 'SGA_v2.0_scaffold126G33770' => 'sas', 'SGA_v2.0_scaffold153G37003' => 'sas', 'SGA_v2.0_scaffold2G01359' => 'sas', 'SGA_v2.0_scaffold5G03064' => 'sas', 'SGA_v2.0_scaffold95G28903' => 'sas', 'SHI12701' => 'shi', 'SHI26410' => 'shi', 'SHI38997' => 'shi', 'SHI53759' => 'shi', 'SHI53886' => 'shi', 'SHI54714' => 'shi', 'SMO011G0041' => 'smo', 'SMO146G0251' => 'smo', 'SMO160G0004' => 'smo', 'SMO174G0057' => 'smo', 'SMO244G0089' => 'smo', 'SMO296G0011' => 'smo', 'Solyc01g091280.3' => 'sly', 'Solyc05g047610.3' => 'sly', 'Solyc05g047640.3' => 'sly', 'Solyc05g055630.3' => 'sly', 'Solyc10g018160.2' => 'sly', 'Solyc10g084820.2' => 'sly', 'Solyc10g086565.2' => 'sly', 'Sopen01g037030' => 'spe', 'Sopen05g027920' => 'spe', 'Sopen05g034070' => 'spe', 'Sopen10g007260' => 'spe', 'Sopen10g034260' => 'spe', 'Sopen10g035950' => 'spe', 'Sp3g07710' => 'spa', 'Sp4g27420' => 'spa', 'Sp5g02450' => 'spa', 'Sp6g01280' => 'spa', 'Sp6g38480' => 'spa', 'Sp7g20780' => 'spa', 'TAR374G1413' => 'tar', 'TAR623G1777' => 'tar', 'TAR629G2370' => 'tar', 'TAR633G1759' => 'tar', 'TAR636G3387' => 'tar', 'THA.LOC104802447' => 'tha', 'THA.LOC104813916' => 'tha', 'THA.LOC104816423' => 'tha', 'THA.LOC104817246' => 'tha', 'THA.LOC104825895' => 'tha', 'Thecc.01G335200' => 'tca', 'Thecc.01G377400' => 'tca', 'Thecc.03G262200' => 'tca', 'Thecc.05G036800' => 'tca', 'Thecc.10G080500' => 'tca', 'Thecc.10G080800' => 'tca', 'Thhalv10001560m.g' => 'esa', 'Thhalv10006120m.g' => 'esa', 'Thhalv10014375m.g' => 'esa', 'Thhalv10021264m.g' => 'esa', 'Thhalv10028856m.g' => 'esa', 'TPR.G1914' => 'tpr', 'TPR.G4757' => 'tpr', 'TPR.G5595' => 'tpr', 'TWI14G0952' => 'twi', 'TWI14G1307' => 'twi', 'TWI38G2143' => 'twi', 'TWI59G0826' => 'twi', 'TWI77G0527' => 'twi', 'TWI81G0150' => 'twi', 'unitig_21.g21018' => 'ugi', 'unitig_26.g9725' => 'ugi', 'unitig_744.g24653' => 'ugi', 'unitig_749.g13778' => 'ugi', 'unitig_899.g15035' => 'ugi', 'vmacro04296' => 'vma', 'vmacro04852' => 'vma', 'vmacro13404' => 'vma', 'vmacro20169' => 'vma', 'vmacro21014' => 'vma', 'VMungo0331G0237' => 'vmu', 'VMungo0331G0706' => 'vmu', 'VMungo0331G1361' => 'vmu', 'VMungo0331G1489' => 'vmu', 'VMungo0540G1037' => 'vmu', 'VMungo0720G2487' => 'vmu', 'VMungo0720G2721' => 'vmu', 'Zm00001eb086860' => 'zma', 'Zm00001eb104760' => 'zma', 'Zm00001eb148220' => 'zma', 'Zm00001eb259030' => 'zma', 'Zm00001eb289590' => 'zma', 'Zm00001eb420150' => 'zma' ), 'gf_id' => 'HOM05D000968', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000968' ), 'data_identifier' => 'HOM05D000968', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000968', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p31690' => 'bna', 'A03p36040' => 'bna', 'A03p53730' => 'bna', 'A04p01410' => 'bna', 'A05p05420' => 'bna', 'A05p39630' => 'bna', 'A05p39640' => 'bna', 'A09p00970' => 'bna', 'A09p53060' => 'bna', 'A10p31890' => 'bna', 'Aa31LG10G15040' => 'aar', 'Aa31LG1G21090' => 'aar', 'Aa31LG1G26900' => 'aar', 'Aa31LG3G1820' => 'aar', 'Aa31LG5G1100' => 'aar', 'Aa31LG6G4740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2265' => 'aag', 'Actinidia07998' => 'ach', 'Actinidia11266' => 'ach', 'Actinidia12682' => 'ach', 'Actinidia26479' => 'ach', 'Actinidia31406' => 'ach', 'Actinidia32437' => 'ach', 'Actinidia38862' => 'ach', 'Ah.05g174230' => 'amhyb', 'Ah.05g179070' => 'amhyb', 'Ah.05g179090' => 'amhyb', 'Ah.12g059950' => 'amhyb', 'AL3G20480' => 'aly', 'AL4G44520' => 'aly', 'AL5G43110' => 'aly', 'AL6G13890' => 'aly', 'AL6G52620' => 'aly', 'AL7G30830' => 'aly', 'Aqoxy1G00899' => 'aox', 'Aqoxy5G04333' => 'aox', 'Aqoxy7G00641' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3IZ0NN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4EF6AW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W9P8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79GA3M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C43NQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFCU6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G95YVJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCHK29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LU1UG8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX91RN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGB4B1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8DA0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9H7JI' => 'arhy', 'AT3G09320' => 'ath', 'AT3G60800' => 'ath', 'AT4G00840' => 'ath', 'AT4G22750' => 'ath', 'AT5G04270' => 'ath', 'ATR0090G003' => 'atr', 'ATR0559G349' => 'atr', 'ATR0680G261' => 'atr', 'ATR0810G048' => 'atr', 'Atru.chr12.831' => 'acertr', 'Atru.chr5.303' => 'acertr', 'Atru.chr5.748' => 'acertr', 'Atru.chr8.1999' => 'acertr', 'Atru.chr9.1436' => 'acertr', 'AUR62004211' => 'cqu', 'AUR62004548' => 'cqu', 'AUR62013637' => 'cqu', 'AUR62022662' => 'cqu', 'AUR62025777' => 'cqu', 'AUR62042386' => 'cqu', 'BcaB01g02310' => 'bca', 'BcaB01g06062' => 'bca', 'BcaB02g08975' => 'bca', 'BcaB02g08980' => 'bca', 'BcaC01g04228' => 'bca', 'BcaC01g06830' => 'bca', 'BcaC02g10186' => 'bca', 'BcaC02g12214' => 'bca', 'BcaC04g24101' => 'bca', 'BcaC05g29520' => 'bca', 'BcaC05g29661' => 'bca', 'BcaC06g32130' => 'bca', 'BcaC06g32131' => 'bca', 'BcaC07g40601' => 'bca', 'BcaC07g42641' => 'bca', 'BcaNung01038' => 'bca', 'BcaNung01676' => 'bca', 'BcaNung02480' => 'bca', 'BcaNung07376' => 'bca', 'BolC3t16146H' => 'bol', 'BolC3t16637H' => 'bol', 'BolC4t22257H' => 'bol', 'BolC4t24728H' => 'bol', 'BolC5t34517H' => 'bol', 'BolC7t45703H' => 'bol', 'BolC8t51166H' => 'bol', 'BolC9t53038H' => 'bol', 'BolC9t60000H' => 'bol', 'BraA01t01345Z' => 'bra', 'BraA01t01346Z' => 'bra', 'BraA01t01348Z' => 'bra', 'BraA03t12347Z' => 'bra', 'BraA03t12775Z' => 'bra', 'BraA03t14439Z' => 'bra', 'BraA04t15860Z' => 'bra', 'BraA05t19511Z' => 'bra', 'BraA05t22746Z' => 'bra', 'BraA09t35767Z' => 'bra', 'BraA09t40732Z' => 'bra', 'BraA10t45233Z' => 'bra', 'C03p38720' => 'bna', 'C03p43680' => 'bna', 'C04p06350' => 'bna', 'C04p31800' => 'bna', 'C05p58680' => 'bna', 'C07p52110' => 'bna', 'C08p35760' => 'bna', 'C09p01050' => 'bna', 'C09p72600' => 'bna', 'CAN.G106.2' => 'can', 'CAN.G1482.1' => 'can', 'CAN.G324.12' => 'can', 'CAN.G388.20' => 'can', 'CAN.G412.7' => 'can', 'CAN.G694.32' => 'can', 'CAN.G92.12' => 'can', 'CANSAT11G2353' => 'cansat', 'CANSAT21G1398' => 'cansat', 'CANSAT56G2456' => 'cansat', 'CANSAT56G3031' => 'cansat', 'CANSAT56G4539' => 'cansat', 'CARHR083680' => 'chi', 'CARHR171190' => 'chi', 'CARHR209010' => 'chi', 'CARHR229680' => 'chi', 'CARHR249490' => 'chi', 'Carub.0003s0844' => 'cru', 'Carub.0005s2755' => 'cru', 'Carub.0006s0322' => 'cru', 'Carub.0006s3586' => 'cru', 'Carub.0007s1855' => 'cru', 'Ca_07808_v3' => 'car', 'Ca_09535_v3' => 'car', 'Ca_10548_v3' => 'car', 'Ca_19913_v3' => 'car', 'Ca_19916_v3' => 'car', 'Ca_19975_v3' => 'car', 'CBR_g22876' => 'cbr', 'CBR_g22879' => 'cbr', 'CBR_g38491' => 'cbr', 'CBR_g54185' => 'cbr', 'CBR_g54190' => 'cbr', 'Cc02_g11020' => 'ccan', 'Cc02_g23920' => 'ccan', 'Cc02_g39860' => 'ccan', 'Cc02_g39870' => 'ccan', 'Cc03_g06760' => 'ccan', 'Cc06_g02450' => 'ccan', 'Cc09_g09450' => 'ccan', 'CDE02G1959' => 'cde', 'CDE04G0600' => 'cde', 'CDE07G1996' => 'cde', 'CDE07G2078' => 'cde', 'CDE11G0611' => 'cde', 'Cfa001683' => 'cfa', 'Cfa001734' => 'cfa', 'Cfa001737' => 'cfa', 'Cfa003751' => 'cfa', 'Cfa012019' => 'cfa', 'Cfa017353' => 'cfa', 'Cfa017732' => 'cfa', 'Cfa022464' => 'cfa', 'Ciclev10012400m.g' => 'ccl', 'Ciclev10021242m.g' => 'ccl', 'Ciclev10021302m.g' => 'ccl', 'Ciclev10021463m.g' => 'ccl', 'Ciclev10032359m.g' => 'ccl', 'CiPaw.01G081000' => 'cil', 'CiPaw.01G262500' => 'cil', 'CiPaw.01G269800' => 'cil', 'CiPaw.02G168400' => 'cil', 'CiPaw.05G119500' => 'cil', 'CiPaw.11G147300' => 'cil', 'ClCG01G003630' => 'cla', 'ClCG05G000510' => 'cla', 'ClCG05G002300' => 'cla', 'ClCG08G007650' => 'cla', 'ClCG10G021250' => 'cla', 'COL.COLO4_06218' => 'col', 'COL.COLO4_12538' => 'col', 'COL.COLO4_14775' => 'col', 'COL.COLO4_23875' => 'col', 'Cpa.g.sc141.16' => 'cpa', 'Cpa.g.sc169.16' => 'cpa', 'Cpa.g.sc244.4' => 'cpa', 'Cpa.g.sc244.5' => 'cpa', 'Cpa.g.sc29.87' => 'cpa', 'Cpa.g.sc53.115' => 'cpa', 'Cre03.g207502' => 'cre', 'Cre06.g277000' => 'cre', 'Cre09.g394050' => 'cre', 'CsaV3_3G007680' => 'csa', 'CsaV3_3G009710' => 'csa', 'CsaV3_3G034790' => 'csa', 'CsaV3_5G003750' => 'csa', 'CsaV3_6G036620' => 'csa', 'CSS0002288' => 'camsi', 'CSS0011250' => 'camsi', 'CSS0021619' => 'camsi', 'CSS0046701' => 'camsi', 'DCAR_006420' => 'dca', 'DCAR_006865' => 'dca', 'DCAR_008558' => 'dca', 'DCAR_028754' => 'dca', 'DCAR_028755' => 'dca', 'Dinv31218' => 'din', 'Dinv32371' => 'din', 'Dinv34250' => 'din', 'Dinv37156' => 'din', 'Dinv43704' => 'din', 'Duzib093G1811' => 'dzi', 'Duzib106G1622' => 'dzi', 'Duzib114G0504' => 'dzi', 'Duzib128G0338' => 'dzi', 'Duzib128G1577' => 'dzi', 'Duzib133G0104' => 'dzi', 'Duzib133G1080' => 'dzi', 'Duzib138G0324' => 'dzi', 'Duzib138G0394' => 'dzi', 'Duzib205G0122' => 'dzi', 'Duzib268G1020' => 'dzi', 'Duzib268G1359' => 'dzi', 'ECA232G3929' => 'eca', 'ECA236G2210' => 'eca', 'ECA236G2287' => 'eca', 'ECA240G4568' => 'eca', 'ECA247G0894' => 'eca', 'EL10Ac1g00200' => 'bvu', 'EL10Ac1g00886' => 'bvu', 'EL10As1g23091' => 'bvu', 'EL10As1g23092' => 'bvu', 'Eucgr.A01284' => 'egr', 'Eucgr.A01285' => 'egr', 'Eucgr.D02456' => 'egr', 'Eucgr.E00018' => 'egr', 'Eucgr.E01439' => 'egr', 'Eucgr.G02859' => 'egr', 'FAN01G0168' => 'fan', 'FAN01G0453' => 'fan', 'FAN01G2761' => 'fan', 'FAN02G1239' => 'fan', 'FAN03G0645' => 'fan', 'FAN03G2707' => 'fan', 'FAN03G2978' => 'fan', 'FAN04G0227' => 'fan', 'FAN06G0091' => 'fan', 'FAN06G1418' => 'fan', 'FAN06G1512' => 'fan', 'FAN06G1986' => 'fan', 'FAN06G2905' => 'fan', 'FAN06G4325' => 'fan', 'FAN08G0033' => 'fan', 'FAN09G0642' => 'fan', 'FAN10G1763' => 'fan', 'FAN10G2026' => 'fan', 'FAN10G2513' => 'fan', 'FAN10G3402' => 'fan', 'FAN10G3564' => 'fan', 'FAN10G3987' => 'fan', 'FAN13G1490' => 'fan', 'FAN14G5857' => 'fan', 'FAN18G1188' => 'fan', 'FvH4_5g00750' => 'fve', 'FvH4_6g13410' => 'fve', 'FvH4_7g11740' => 'fve', 'FvH4_7g17410' => 'fve', 'FvH4_7g18860' => 'fve', 'Glyma.01G099100' => 'gma', 'Glyma.01G142300' => 'gma', 'Glyma.03G025500' => 'gma', 'Glyma.03G069700' => 'gma', 'Glyma.03G260000' => 'gma', 'Glyma.09G269800' => 'gma', 'Glyma.10G208700' => 'gma', 'Glyma.18G220400' => 'gma', 'Glyma.20G182000' => 'gma', 'Gohir.A01G221726' => 'ghi', 'Gohir.A07G134600' => 'ghi', 'Gohir.A07G146000' => 'ghi', 'Gohir.A08G173900' => 'ghi', 'Gohir.A09G194900' => 'ghi', 'Gohir.A10G204100' => 'ghi', 'Gohir.A11G080600' => 'ghi', 'Gohir.A11G327500' => 'ghi', 'Gohir.A12G101800' => 'ghi', 'Gohir.D01G211200' => 'ghi', 'Gohir.D07G139200' => 'ghi', 'Gohir.D07G152100' => 'ghi', 'Gohir.D08G192600' => 'ghi', 'Gohir.D09G189200' => 'ghi', 'Gohir.D10G212000' => 'ghi', 'Gohir.D11G085200' => 'ghi', 'Gohir.D11G346400' => 'ghi', 'Gohir.D12G104800' => 'ghi', 'Gorai.001G151300' => 'gra', 'Gorai.001G174100' => 'gra', 'Gorai.002G257000' => 'gra', 'Gorai.004G202600' => 'gra', 'Gorai.007G090900' => 'gra', 'Gorai.007G376700' => 'gra', 'Gorai.008G114100' => 'gra', 'Gorai.011G237900' => 'gra', 'GSVIVG01005450001' => 'vvi', 'GSVIVG01016232001' => 'vvi', 'GSVIVG01026157001' => 'vvi', 'GSVIVG01027419001' => 'vvi', 'GSVIVG01027631001' => 'vvi', 'GSVIVG01034143001' => 'vvi', 'HanXRQChr03g0093921' => 'han', 'HanXRQChr04g0120001' => 'han', 'HanXRQChr04g0122561' => 'han', 'HanXRQChr09g0246851' => 'han', 'HanXRQChr10g0293311' => 'han', 'HanXRQChr13g0425231' => 'han', 'HanXRQChr16g0532571' => 'han', 'Haze_09050' => 'cav', 'Haze_15715' => 'cav', 'Haze_15716' => 'cav', 'Haze_16803' => 'cav', 'Haze_16850' => 'cav', 'Hma1.2p1_0301F.1_g118655' => 'hma', 'Hma1.2p1_0309F.1_g120590' => 'hma', 'Hma1.2p1_0936F.1_g238900' => 'hma', 'Hma1.2p1_3552F.1_g336740' => 'hma', 'HPP92_003520' => 'vpl', 'HPP92_006628' => 'vpl', 'HPP92_006645' => 'vpl', 'HPP92_014669' => 'vpl', 'HPP92_015077' => 'vpl', 'Hund16742' => 'sun', 'Hund17022' => 'sun', 'Lalb_Chr02g0152131' => 'lal', 'Lalb_Chr05g0225371' => 'lal', 'Lalb_Chr07g0189841' => 'lal', 'Lalb_Chr07g0192961' => 'lal', 'Lalb_Chr12g0208221' => 'lal', 'Lalb_Chr13g0291211' => 'lal', 'Lalb_Chr13g0291781' => 'lal', 'Lalb_Chr18g0044651' => 'lal', 'Lalb_Chr21g0313731' => 'lal', 'Lj1g0022533' => 'lja', 'Lj2A18T50' => 'lonja', 'Lj2A92G93' => 'lonja', 'Lj3A965T73' => 'lonja', 'Lj3g0000673' => 'lja', 'Lj3g0002666' => 'lja', 'Lj4g0016985' => 'lja', 'Lj5g0003625' => 'lja', 'Lj7A529G36' => 'lonja', 'Lj9A569T49' => 'lonja', 'Lj9A604T63' => 'lonja', 'Lsat_1_v5_gn_3_132060' => 'lsa', 'Lsat_1_v5_gn_4_68941' => 'lsa', 'Lsat_1_v5_gn_5_95580' => 'lsa', 'Lsat_1_v5_gn_7_161' => 'lsa', 'Lsat_1_v5_gn_7_7041' => 'lsa', 'Lsat_1_v5_gn_9_33481' => 'lsa', 'Lsat_1_v5_gn_9_68260' => 'lsa', 'Manes.01G073100' => 'mes', 'Manes.01G266300' => 'mes', 'Manes.02G033300' => 'mes', 'Manes.05G017900' => 'mes', 'Manes.05G046100' => 'mes', 'Manes.08G080900' => 'mes', 'Manes.10G049400' => 'mes', 'Mapoly0009s0186' => 'mpo', 'Mapoly0036s0118' => 'mpo', 'Mapoly0101s0046' => 'mpo', 'MBI04_g30218_MAGBIO' => 'mbi', 'MBI04_g35564_MAGBIO' => 'mbi', 'MBI12_g34011_MAGBIO' => 'mbi', 'MBI14_g04655_MAGBIO' => 'mbi', 'MCO07G653' => 'mco', 'MCO10G173' => 'mco', 'MD01G1087100' => 'mdo', 'MD01G1104200' => 'mdo', 'MD02G1205100' => 'mdo', 'MD04G1079200' => 'mdo', 'MD04G1131400' => 'mdo', 'MD07G1121600' => 'mdo', 'MD07G1157300' => 'mdo', 'MD07G1171000' => 'mdo', 'MD12G1144500' => 'mdo', 'Medtr1g094610' => 'mtr', 'Medtr4g021795' => 'mtr', 'Medtr4g023760' => 'mtr', 'Medtr7g118050' => 'mtr', 'MELO3C005582.2' => 'cme', 'MELO3C005989.2' => 'cme', 'MELO3C006192.2' => 'cme', 'MELO3C009248.2' => 'cme', 'MELO3C019817.2' => 'cme', 'Migut.B01625' => 'egut', 'Migut.B01915' => 'egut', 'Migut.F01721' => 'egut', 'Migut.J00314' => 'egut', 'MSTRG.20742' => 'ama', 'MSTRG.8134' => 'ama', 'Nitab4.5_0000096g0010' => 'nta', 'Nitab4.5_0000202g0030' => 'nta', 'Nitab4.5_0000216g0370' => 'nta', 'Nitab4.5_0000457g0230' => 'nta', 'Nitab4.5_0001702g0170' => 'nta', 'Nitab4.5_0003607g0010' => 'nta', 'Nitab4.5_0004917g0020' => 'nta', 'Nitab4.5_0007059g0010' => 'nta', 'Nitab4.5_0007184g0010' => 'nta', 'Nitab4.5_0007346g0020' => 'nta', 'Nn1g00410' => 'nnu', 'Nn1g01252' => 'nnu', 'Nn2g11168' => 'nnu', 'Nn2g13403' => 'nnu', 'Nn2g13760' => 'nnu', 'Nn4g26380' => 'nnu', 'Oeu000806.2' => 'oeu', 'Oeu005788.1' => 'oeu', 'Oeu006900.3' => 'oeu', 'Oeu007797.1' => 'oeu', 'Oeu011932.1' => 'oeu', 'Oeu022739.1' => 'oeu', 'Oeu037918.1' => 'oeu', 'Oeu055490.2' => 'oeu', 'Os01g0844400' => 'osa', 'Os02g0819100' => 'osa', 'Os03g0804300' => 'osa', 'Os05g0458000' => 'osa', 'Os07g0467800' => 'osa', 'Os12g0602200' => 'osa', 'Peaxi162Scf00013g03444' => 'pax', 'Peaxi162Scf00094g01120' => 'pax', 'Peaxi162Scf00191g01211' => 'pax', 'Peaxi162Scf00238g01110' => 'pax', 'Peaxi162Scf00330g00719' => 'pax', 'Peaxi162Scf00627g00018' => 'pax', 'PGR031G2686' => 'pgr', 'PGR042G0809' => 'pgr', 'PGR142G0193' => 'pgr', 'PGSC0003DMG400011066' => 'stu', 'PGSC0003DMG400012041' => 'stu', 'PGSC0003DMG400013678' => 'stu', 'PGSC0003DMG400023477' => 'stu', 'PGSC0003DMG400025956' => 'stu', 'PGSC0003DMG401019151' => 'stu', 'Phvul.006G116400' => 'pvu', 'Phvul.007G097300' => 'pvu', 'Phvul.010G015000' => 'pvu', 'Phvul.010G083900' => 'pvu', 'Potri.001G117100' => 'ptr', 'Potri.002G147300' => 'ptr', 'Potri.003G115600' => 'ptr', 'Potri.006G087400' => 'ptr', 'Potri.010G226100' => 'ptr', 'Potri.014G069200' => 'ptr', 'Potri.014G104000' => 'ptr', 'Potri.016G100200' => 'ptr', 'Pp3c10_20450' => 'ppa', 'Pp3c1_42400' => 'ppa', 'Pp3c3_24390' => 'ppa', 'Pp3c3_2860' => 'ppa', 'PRCOL_00003193' => 'pco', 'Prupe.2G144500' => 'ppe', 'Prupe.2G195700' => 'ppe', 'Prupe.2G209800' => 'ppe', 'Prupe.5G080000' => 'ppe', 'Prupe.6G257900' => 'ppe', 'Psat3g001160' => 'psa', 'Psat6g181880' => 'psa', 'Psat7g233720' => 'psa', 'PSO063G7587' => 'pso', 'PSO339G2145' => 'pso', 'PSO339G3369' => 'pso', 'PSO478G2747' => 'pso', 'PSO513G0140' => 'pso', 'PSO782G1614' => 'pso', 'PSO782G4889' => 'pso', 'PSO782G5485' => 'pso', 'PSO801G0241' => 'pso', 'QL07p048854' => 'qlo', 'QL08p046745' => 'qlo', 'QL08p052606' => 'qlo', 'QL08p053414' => 'qlo', 'QL08p054868' => 'qlo', 'RcHm_v2.0_Chr1g0350251' => 'rch', 'RcHm_v2.0_Chr1g0360851' => 'rch', 'RcHm_v2.0_Chr1g0362791' => 'rch', 'RcHm_v2.0_Chr3g0466281' => 'rch', 'RcHm_v2.0_Chr7g0201481' => 'rch', 'Rhsim01G0148600' => 'rsi', 'Rhsim05G0194400' => 'rsi', 'Rhsim07G0000700' => 'rsi', 'Rhsim07G0000800' => 'rsi', 'Rhsim07G0027900' => 'rsi', 'Rhsim09G0149500' => 'rsi', 'RhsimUnG0186900' => 'rsi', 'Sabra01G0089900' => 'sbr', 'Sabra02G0114700' => 'sbr', 'Sabra02G0116300' => 'sbr', 'Sabra03G0080100' => 'sbr', 'Sabra08G0024300' => 'sbr', 'Sabra10G0174300' => 'sbr', 'Sabra14G0048900' => 'sbr', 'Sabra14G0076500' => 'sbr', 'SalBow5G2513' => 'sbo', 'Sc01g0002300' => 'sci', 'Sc01g0004450' => 'sci', 'Sc06g0001680' => 'sci', 'Sc23g0003580' => 'sci', 'Sed0000913' => 'sed', 'Sed0001655' => 'sed', 'Sed0007745' => 'sed', 'Sed0010951' => 'sed', 'Sed0017599' => 'sed', 'Sed0021405' => 'sed', 'Sed0022810' => 'sed', 'SEGI_07099' => 'sgi', 'SEGI_11931' => 'sgi', 'SEGI_13187' => 'sgi', 'SEGI_29958' => 'sgi', 'SEGI_36351' => 'sgi', 'SGA_v2.0_scaffold126G33770' => 'sas', 'SGA_v2.0_scaffold153G37003' => 'sas', 'SGA_v2.0_scaffold2G01359' => 'sas', 'SGA_v2.0_scaffold5G03064' => 'sas', 'SGA_v2.0_scaffold95G28903' => 'sas', 'SHI12701' => 'shi', 'SHI26410' => 'shi', 'SHI38997' => 'shi', 'SHI53759' => 'shi', 'SHI53886' => 'shi', 'SHI54714' => 'shi', 'SMO011G0041' => 'smo', 'SMO146G0251' => 'smo', 'SMO160G0004' => 'smo', 'SMO174G0057' => 'smo', 'SMO244G0089' => 'smo', 'SMO296G0011' => 'smo', 'Solyc01g091280.3' => 'sly', 'Solyc05g047610.3' => 'sly', 'Solyc05g047640.3' => 'sly', 'Solyc05g055630.3' => 'sly', 'Solyc10g018160.2' => 'sly', 'Solyc10g084820.2' => 'sly', 'Solyc10g086565.2' => 'sly', 'Sopen01g037030' => 'spe', 'Sopen05g027920' => 'spe', 'Sopen05g034070' => 'spe', 'Sopen10g007260' => 'spe', 'Sopen10g034260' => 'spe', 'Sopen10g035950' => 'spe', 'Sp3g07710' => 'spa', 'Sp4g27420' => 'spa', 'Sp5g02450' => 'spa', 'Sp6g01280' => 'spa', 'Sp6g38480' => 'spa', 'Sp7g20780' => 'spa', 'TAR374G1413' => 'tar', 'TAR623G1777' => 'tar', 'TAR629G2370' => 'tar', 'TAR633G1759' => 'tar', 'TAR636G3387' => 'tar', 'THA.LOC104802447' => 'tha', 'THA.LOC104813916' => 'tha', 'THA.LOC104816423' => 'tha', 'THA.LOC104817246' => 'tha', 'THA.LOC104825895' => 'tha', 'Thecc.01G335200' => 'tca', 'Thecc.01G377400' => 'tca', 'Thecc.03G262200' => 'tca', 'Thecc.05G036800' => 'tca', 'Thecc.10G080500' => 'tca', 'Thecc.10G080800' => 'tca', 'Thhalv10001560m.g' => 'esa', 'Thhalv10006120m.g' => 'esa', 'Thhalv10014375m.g' => 'esa', 'Thhalv10021264m.g' => 'esa', 'Thhalv10028856m.g' => 'esa', 'TPR.G1914' => 'tpr', 'TPR.G4757' => 'tpr', 'TPR.G5595' => 'tpr', 'TWI14G0952' => 'twi', 'TWI14G1307' => 'twi', 'TWI38G2143' => 'twi', 'TWI59G0826' => 'twi', 'TWI77G0527' => 'twi', 'TWI81G0150' => 'twi', 'unitig_21.g21018' => 'ugi', 'unitig_26.g9725' => 'ugi', 'unitig_744.g24653' => 'ugi', 'unitig_749.g13778' => 'ugi', 'unitig_899.g15035' => 'ugi', 'vmacro04296' => 'vma', 'vmacro04852' => 'vma', 'vmacro13404' => 'vma', 'vmacro20169' => 'vma', 'vmacro21014' => 'vma', 'VMungo0331G0237' => 'vmu', 'VMungo0331G0706' => 'vmu', 'VMungo0331G1361' => 'vmu', 'VMungo0331G1489' => 'vmu', 'VMungo0540G1037' => 'vmu', 'VMungo0720G2487' => 'vmu', 'VMungo0720G2721' => 'vmu', 'Zm00001eb086860' => 'zma', 'Zm00001eb104760' => 'zma', 'Zm00001eb148220' => 'zma', 'Zm00001eb259030' => 'zma', 'Zm00001eb289590' => 'zma', 'Zm00001eb420150' => 'zma' ) $gf_id = 'HOM05D000968' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000968' ) $data_identifier = 'HOM05D000968' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 19, 'bol' => (int) 9, 'bra' => (int) 12, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 5, 'ccan' => (int) 7, 'cde' => (int) 5, 'cfa' => (int) 8, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 4, 'dca' => (int) 5, 'din' => (int) 5, 'dzi' => (int) 12, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 25, 'fve' => (int) 5, 'gma' => (int) 9, 'ghi' => (int) 18, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 7, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 5, 'sun' => (int) 2, 'lal' => (int) 9, 'lja' => (int) 5, 'lonja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 9, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 2, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 3, 'stu' => (int) 6, 'pvu' => (int) 4, 'ptr' => (int) 8, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 3, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 1, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 5, 'sas' => (int) 5, 'shi' => (int) 6, 'smo' => (int) 6, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 3, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420150' $species_info = array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ) $local_species = 'vvi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000968', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p31690' => 'bna', 'A03p36040' => 'bna', 'A03p53730' => 'bna', 'A04p01410' => 'bna', 'A05p05420' => 'bna', 'A05p39630' => 'bna', 'A05p39640' => 'bna', 'A09p00970' => 'bna', 'A09p53060' => 'bna', 'A10p31890' => 'bna', 'Aa31LG10G15040' => 'aar', 'Aa31LG1G21090' => 'aar', 'Aa31LG1G26900' => 'aar', 'Aa31LG3G1820' => 'aar', 'Aa31LG5G1100' => 'aar', 'Aa31LG6G4740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2265' => 'aag', 'Actinidia07998' => 'ach', 'Actinidia11266' => 'ach', 'Actinidia12682' => 'ach', 'Actinidia26479' => 'ach', 'Actinidia31406' => 'ach', 'Actinidia32437' => 'ach', 'Actinidia38862' => 'ach', 'Ah.05g174230' => 'amhyb', 'Ah.05g179070' => 'amhyb', 'Ah.05g179090' => 'amhyb', 'Ah.12g059950' => 'amhyb', 'AL3G20480' => 'aly', 'AL4G44520' => 'aly', 'AL5G43110' => 'aly', 'AL6G13890' => 'aly', 'AL6G52620' => 'aly', 'AL7G30830' => 'aly', 'Aqoxy1G00899' => 'aox', 'Aqoxy5G04333' => 'aox', 'Aqoxy7G00641' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3IZ0NN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4EF6AW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W9P8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79GA3M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C43NQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFCU6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G95YVJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCHK29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LU1UG8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX91RN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGB4B1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8DA0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9H7JI' => 'arhy', 'AT3G09320' => 'ath', 'AT3G60800' => 'ath', 'AT4G00840' => 'ath', 'AT4G22750' => 'ath', 'AT5G04270' => 'ath', 'ATR0090G003' => 'atr', 'ATR0559G349' => 'atr', 'ATR0680G261' => 'atr', 'ATR0810G048' => 'atr', 'Atru.chr12.831' => 'acertr', 'Atru.chr5.303' => 'acertr', 'Atru.chr5.748' => 'acertr', 'Atru.chr8.1999' => 'acertr', 'Atru.chr9.1436' => 'acertr', 'AUR62004211' => 'cqu', 'AUR62004548' => 'cqu', 'AUR62013637' => 'cqu', 'AUR62022662' => 'cqu', 'AUR62025777' => 'cqu', 'AUR62042386' => 'cqu', 'BcaB01g02310' => 'bca', 'BcaB01g06062' => 'bca', 'BcaB02g08975' => 'bca', 'BcaB02g08980' => 'bca', 'BcaC01g04228' => 'bca', 'BcaC01g06830' => 'bca', 'BcaC02g10186' => 'bca', 'BcaC02g12214' => 'bca', 'BcaC04g24101' => 'bca', 'BcaC05g29520' => 'bca', 'BcaC05g29661' => 'bca', 'BcaC06g32130' => 'bca', 'BcaC06g32131' => 'bca', 'BcaC07g40601' => 'bca', 'BcaC07g42641' => 'bca', 'BcaNung01038' => 'bca', 'BcaNung01676' => 'bca', 'BcaNung02480' => 'bca', 'BcaNung07376' => 'bca', 'BolC3t16146H' => 'bol', 'BolC3t16637H' => 'bol', 'BolC4t22257H' => 'bol', 'BolC4t24728H' => 'bol', 'BolC5t34517H' => 'bol', 'BolC7t45703H' => 'bol', 'BolC8t51166H' => 'bol', 'BolC9t53038H' => 'bol', 'BolC9t60000H' => 'bol', 'BraA01t01345Z' => 'bra', 'BraA01t01346Z' => 'bra', 'BraA01t01348Z' => 'bra', 'BraA03t12347Z' => 'bra', 'BraA03t12775Z' => 'bra', 'BraA03t14439Z' => 'bra', 'BraA04t15860Z' => 'bra', 'BraA05t19511Z' => 'bra', 'BraA05t22746Z' => 'bra', 'BraA09t35767Z' => 'bra', 'BraA09t40732Z' => 'bra', 'BraA10t45233Z' => 'bra', 'C03p38720' => 'bna', 'C03p43680' => 'bna', 'C04p06350' => 'bna', 'C04p31800' => 'bna', 'C05p58680' => 'bna', 'C07p52110' => 'bna', 'C08p35760' => 'bna', 'C09p01050' => 'bna', 'C09p72600' => 'bna', 'CAN.G106.2' => 'can', 'CAN.G1482.1' => 'can', 'CAN.G324.12' => 'can', 'CAN.G388.20' => 'can', 'CAN.G412.7' => 'can', 'CAN.G694.32' => 'can', 'CAN.G92.12' => 'can', 'CANSAT11G2353' => 'cansat', 'CANSAT21G1398' => 'cansat', 'CANSAT56G2456' => 'cansat', 'CANSAT56G3031' => 'cansat', 'CANSAT56G4539' => 'cansat', 'CARHR083680' => 'chi', 'CARHR171190' => 'chi', 'CARHR209010' => 'chi', 'CARHR229680' => 'chi', 'CARHR249490' => 'chi', 'Carub.0003s0844' => 'cru', 'Carub.0005s2755' => 'cru', 'Carub.0006s0322' => 'cru', 'Carub.0006s3586' => 'cru', 'Carub.0007s1855' => 'cru', 'Ca_07808_v3' => 'car', 'Ca_09535_v3' => 'car', 'Ca_10548_v3' => 'car', 'Ca_19913_v3' => 'car', 'Ca_19916_v3' => 'car', 'Ca_19975_v3' => 'car', 'CBR_g22876' => 'cbr', 'CBR_g22879' => 'cbr', 'CBR_g38491' => 'cbr', 'CBR_g54185' => 'cbr', 'CBR_g54190' => 'cbr', 'Cc02_g11020' => 'ccan', 'Cc02_g23920' => 'ccan', 'Cc02_g39860' => 'ccan', 'Cc02_g39870' => 'ccan', 'Cc03_g06760' => 'ccan', 'Cc06_g02450' => 'ccan', 'Cc09_g09450' => 'ccan', 'CDE02G1959' => 'cde', 'CDE04G0600' => 'cde', 'CDE07G1996' => 'cde', 'CDE07G2078' => 'cde', 'CDE11G0611' => 'cde', 'Cfa001683' => 'cfa', 'Cfa001734' => 'cfa', 'Cfa001737' => 'cfa', 'Cfa003751' => 'cfa', 'Cfa012019' => 'cfa', 'Cfa017353' => 'cfa', 'Cfa017732' => 'cfa', 'Cfa022464' => 'cfa', 'Ciclev10012400m.g' => 'ccl', 'Ciclev10021242m.g' => 'ccl', 'Ciclev10021302m.g' => 'ccl', 'Ciclev10021463m.g' => 'ccl', 'Ciclev10032359m.g' => 'ccl', 'CiPaw.01G081000' => 'cil', 'CiPaw.01G262500' => 'cil', 'CiPaw.01G269800' => 'cil', 'CiPaw.02G168400' => 'cil', 'CiPaw.05G119500' => 'cil', 'CiPaw.11G147300' => 'cil', 'ClCG01G003630' => 'cla', 'ClCG05G000510' => 'cla', 'ClCG05G002300' => 'cla', 'ClCG08G007650' => 'cla', 'ClCG10G021250' => 'cla', 'COL.COLO4_06218' => 'col', 'COL.COLO4_12538' => 'col', 'COL.COLO4_14775' => 'col', 'COL.COLO4_23875' => 'col', 'Cpa.g.sc141.16' => 'cpa', 'Cpa.g.sc169.16' => 'cpa', 'Cpa.g.sc244.4' => 'cpa', 'Cpa.g.sc244.5' => 'cpa', 'Cpa.g.sc29.87' => 'cpa', 'Cpa.g.sc53.115' => 'cpa', 'Cre03.g207502' => 'cre', 'Cre06.g277000' => 'cre', 'Cre09.g394050' => 'cre', 'CsaV3_3G007680' => 'csa', 'CsaV3_3G009710' => 'csa', 'CsaV3_3G034790' => 'csa', 'CsaV3_5G003750' => 'csa', 'CsaV3_6G036620' => 'csa', 'CSS0002288' => 'camsi', 'CSS0011250' => 'camsi', 'CSS0021619' => 'camsi', 'CSS0046701' => 'camsi', 'DCAR_006420' => 'dca', 'DCAR_006865' => 'dca', 'DCAR_008558' => 'dca', 'DCAR_028754' => 'dca', 'DCAR_028755' => 'dca', 'Dinv31218' => 'din', 'Dinv32371' => 'din', 'Dinv34250' => 'din', 'Dinv37156' => 'din', 'Dinv43704' => 'din', 'Duzib093G1811' => 'dzi', 'Duzib106G1622' => 'dzi', 'Duzib114G0504' => 'dzi', 'Duzib128G0338' => 'dzi', 'Duzib128G1577' => 'dzi', 'Duzib133G0104' => 'dzi', 'Duzib133G1080' => 'dzi', 'Duzib138G0324' => 'dzi', 'Duzib138G0394' => 'dzi', 'Duzib205G0122' => 'dzi', 'Duzib268G1020' => 'dzi', 'Duzib268G1359' => 'dzi', 'ECA232G3929' => 'eca', 'ECA236G2210' => 'eca', 'ECA236G2287' => 'eca', 'ECA240G4568' => 'eca', 'ECA247G0894' => 'eca', 'EL10Ac1g00200' => 'bvu', 'EL10Ac1g00886' => 'bvu', 'EL10As1g23091' => 'bvu', 'EL10As1g23092' => 'bvu', 'Eucgr.A01284' => 'egr', 'Eucgr.A01285' => 'egr', 'Eucgr.D02456' => 'egr', 'Eucgr.E00018' => 'egr', 'Eucgr.E01439' => 'egr', 'Eucgr.G02859' => 'egr', 'FAN01G0168' => 'fan', 'FAN01G0453' => 'fan', 'FAN01G2761' => 'fan', 'FAN02G1239' => 'fan', 'FAN03G0645' => 'fan', 'FAN03G2707' => 'fan', 'FAN03G2978' => 'fan', 'FAN04G0227' => 'fan', 'FAN06G0091' => 'fan', 'FAN06G1418' => 'fan', 'FAN06G1512' => 'fan', 'FAN06G1986' => 'fan', 'FAN06G2905' => 'fan', 'FAN06G4325' => 'fan', 'FAN08G0033' => 'fan', 'FAN09G0642' => 'fan', 'FAN10G1763' => 'fan', 'FAN10G2026' => 'fan', 'FAN10G2513' => 'fan', 'FAN10G3402' => 'fan', 'FAN10G3564' => 'fan', 'FAN10G3987' => 'fan', 'FAN13G1490' => 'fan', 'FAN14G5857' => 'fan', 'FAN18G1188' => 'fan', 'FvH4_5g00750' => 'fve', 'FvH4_6g13410' => 'fve', 'FvH4_7g11740' => 'fve', 'FvH4_7g17410' => 'fve', 'FvH4_7g18860' => 'fve', 'Glyma.01G099100' => 'gma', 'Glyma.01G142300' => 'gma', 'Glyma.03G025500' => 'gma', 'Glyma.03G069700' => 'gma', 'Glyma.03G260000' => 'gma', 'Glyma.09G269800' => 'gma', 'Glyma.10G208700' => 'gma', 'Glyma.18G220400' => 'gma', 'Glyma.20G182000' => 'gma', 'Gohir.A01G221726' => 'ghi', 'Gohir.A07G134600' => 'ghi', 'Gohir.A07G146000' => 'ghi', 'Gohir.A08G173900' => 'ghi', 'Gohir.A09G194900' => 'ghi', 'Gohir.A10G204100' => 'ghi', 'Gohir.A11G080600' => 'ghi', 'Gohir.A11G327500' => 'ghi', 'Gohir.A12G101800' => 'ghi', 'Gohir.D01G211200' => 'ghi', 'Gohir.D07G139200' => 'ghi', 'Gohir.D07G152100' => 'ghi', 'Gohir.D08G192600' => 'ghi', 'Gohir.D09G189200' => 'ghi', 'Gohir.D10G212000' => 'ghi', 'Gohir.D11G085200' => 'ghi', 'Gohir.D11G346400' => 'ghi', 'Gohir.D12G104800' => 'ghi', 'Gorai.001G151300' => 'gra', 'Gorai.001G174100' => 'gra', 'Gorai.002G257000' => 'gra', 'Gorai.004G202600' => 'gra', 'Gorai.007G090900' => 'gra', 'Gorai.007G376700' => 'gra', 'Gorai.008G114100' => 'gra', 'Gorai.011G237900' => 'gra', 'GSVIVG01005450001' => 'vvi', 'GSVIVG01016232001' => 'vvi', 'GSVIVG01026157001' => 'vvi', 'GSVIVG01027419001' => 'vvi', 'GSVIVG01027631001' => 'vvi', 'GSVIVG01034143001' => 'vvi', 'HanXRQChr03g0093921' => 'han', 'HanXRQChr04g0120001' => 'han', 'HanXRQChr04g0122561' => 'han', 'HanXRQChr09g0246851' => 'han', 'HanXRQChr10g0293311' => 'han', 'HanXRQChr13g0425231' => 'han', 'HanXRQChr16g0532571' => 'han', 'Haze_09050' => 'cav', 'Haze_15715' => 'cav', 'Haze_15716' => 'cav', 'Haze_16803' => 'cav', 'Haze_16850' => 'cav', 'Hma1.2p1_0301F.1_g118655' => 'hma', 'Hma1.2p1_0309F.1_g120590' => 'hma', 'Hma1.2p1_0936F.1_g238900' => 'hma', 'Hma1.2p1_3552F.1_g336740' => 'hma', 'HPP92_003520' => 'vpl', 'HPP92_006628' => 'vpl', 'HPP92_006645' => 'vpl', 'HPP92_014669' => 'vpl', 'HPP92_015077' => 'vpl', 'Hund16742' => 'sun', 'Hund17022' => 'sun', 'Lalb_Chr02g0152131' => 'lal', 'Lalb_Chr05g0225371' => 'lal', 'Lalb_Chr07g0189841' => 'lal', 'Lalb_Chr07g0192961' => 'lal', 'Lalb_Chr12g0208221' => 'lal', 'Lalb_Chr13g0291211' => 'lal', 'Lalb_Chr13g0291781' => 'lal', 'Lalb_Chr18g0044651' => 'lal', 'Lalb_Chr21g0313731' => 'lal', 'Lj1g0022533' => 'lja', 'Lj2A18T50' => 'lonja', 'Lj2A92G93' => 'lonja', 'Lj3A965T73' => 'lonja', 'Lj3g0000673' => 'lja', 'Lj3g0002666' => 'lja', 'Lj4g0016985' => 'lja', 'Lj5g0003625' => 'lja', 'Lj7A529G36' => 'lonja', 'Lj9A569T49' => 'lonja', 'Lj9A604T63' => 'lonja', 'Lsat_1_v5_gn_3_132060' => 'lsa', 'Lsat_1_v5_gn_4_68941' => 'lsa', 'Lsat_1_v5_gn_5_95580' => 'lsa', 'Lsat_1_v5_gn_7_161' => 'lsa', 'Lsat_1_v5_gn_7_7041' => 'lsa', 'Lsat_1_v5_gn_9_33481' => 'lsa', 'Lsat_1_v5_gn_9_68260' => 'lsa', 'Manes.01G073100' => 'mes', 'Manes.01G266300' => 'mes', 'Manes.02G033300' => 'mes', 'Manes.05G017900' => 'mes', 'Manes.05G046100' => 'mes', 'Manes.08G080900' => 'mes', 'Manes.10G049400' => 'mes', 'Mapoly0009s0186' => 'mpo', 'Mapoly0036s0118' => 'mpo', 'Mapoly0101s0046' => 'mpo', 'MBI04_g30218_MAGBIO' => 'mbi', 'MBI04_g35564_MAGBIO' => 'mbi', 'MBI12_g34011_MAGBIO' => 'mbi', 'MBI14_g04655_MAGBIO' => 'mbi', 'MCO07G653' => 'mco', 'MCO10G173' => 'mco', 'MD01G1087100' => 'mdo', 'MD01G1104200' => 'mdo', 'MD02G1205100' => 'mdo', 'MD04G1079200' => 'mdo', 'MD04G1131400' => 'mdo', 'MD07G1121600' => 'mdo', 'MD07G1157300' => 'mdo', 'MD07G1171000' => 'mdo', 'MD12G1144500' => 'mdo', 'Medtr1g094610' => 'mtr', 'Medtr4g021795' => 'mtr', 'Medtr4g023760' => 'mtr', 'Medtr7g118050' => 'mtr', 'MELO3C005582.2' => 'cme', 'MELO3C005989.2' => 'cme', 'MELO3C006192.2' => 'cme', 'MELO3C009248.2' => 'cme', 'MELO3C019817.2' => 'cme', 'Migut.B01625' => 'egut', 'Migut.B01915' => 'egut', 'Migut.F01721' => 'egut', 'Migut.J00314' => 'egut', 'MSTRG.20742' => 'ama', 'MSTRG.8134' => 'ama', 'Nitab4.5_0000096g0010' => 'nta', 'Nitab4.5_0000202g0030' => 'nta', 'Nitab4.5_0000216g0370' => 'nta', 'Nitab4.5_0000457g0230' => 'nta', 'Nitab4.5_0001702g0170' => 'nta', 'Nitab4.5_0003607g0010' => 'nta', 'Nitab4.5_0004917g0020' => 'nta', 'Nitab4.5_0007059g0010' => 'nta', 'Nitab4.5_0007184g0010' => 'nta', 'Nitab4.5_0007346g0020' => 'nta', 'Nn1g00410' => 'nnu', 'Nn1g01252' => 'nnu', 'Nn2g11168' => 'nnu', 'Nn2g13403' => 'nnu', 'Nn2g13760' => 'nnu', 'Nn4g26380' => 'nnu', 'Oeu000806.2' => 'oeu', 'Oeu005788.1' => 'oeu', 'Oeu006900.3' => 'oeu', 'Oeu007797.1' => 'oeu', 'Oeu011932.1' => 'oeu', 'Oeu022739.1' => 'oeu', 'Oeu037918.1' => 'oeu', 'Oeu055490.2' => 'oeu', 'Os01g0844400' => 'osa', 'Os02g0819100' => 'osa', 'Os03g0804300' => 'osa', 'Os05g0458000' => 'osa', 'Os07g0467800' => 'osa', 'Os12g0602200' => 'osa', 'Peaxi162Scf00013g03444' => 'pax', 'Peaxi162Scf00094g01120' => 'pax', 'Peaxi162Scf00191g01211' => 'pax', 'Peaxi162Scf00238g01110' => 'pax', 'Peaxi162Scf00330g00719' => 'pax', 'Peaxi162Scf00627g00018' => 'pax', 'PGR031G2686' => 'pgr', 'PGR042G0809' => 'pgr', 'PGR142G0193' => 'pgr', 'PGSC0003DMG400011066' => 'stu', 'PGSC0003DMG400012041' => 'stu', 'PGSC0003DMG400013678' => 'stu', 'PGSC0003DMG400023477' => 'stu', 'PGSC0003DMG400025956' => 'stu', 'PGSC0003DMG401019151' => 'stu', 'Phvul.006G116400' => 'pvu', 'Phvul.007G097300' => 'pvu', 'Phvul.010G015000' => 'pvu', 'Phvul.010G083900' => 'pvu', 'Potri.001G117100' => 'ptr', 'Potri.002G147300' => 'ptr', 'Potri.003G115600' => 'ptr', 'Potri.006G087400' => 'ptr', 'Potri.010G226100' => 'ptr', 'Potri.014G069200' => 'ptr', 'Potri.014G104000' => 'ptr', 'Potri.016G100200' => 'ptr', 'Pp3c10_20450' => 'ppa', 'Pp3c1_42400' => 'ppa', 'Pp3c3_24390' => 'ppa', 'Pp3c3_2860' => 'ppa', 'PRCOL_00003193' => 'pco', 'Prupe.2G144500' => 'ppe', 'Prupe.2G195700' => 'ppe', 'Prupe.2G209800' => 'ppe', 'Prupe.5G080000' => 'ppe', 'Prupe.6G257900' => 'ppe', 'Psat3g001160' => 'psa', 'Psat6g181880' => 'psa', 'Psat7g233720' => 'psa', 'PSO063G7587' => 'pso', 'PSO339G2145' => 'pso', 'PSO339G3369' => 'pso', 'PSO478G2747' => 'pso', 'PSO513G0140' => 'pso', 'PSO782G1614' => 'pso', 'PSO782G4889' => 'pso', 'PSO782G5485' => 'pso', 'PSO801G0241' => 'pso', 'QL07p048854' => 'qlo', 'QL08p046745' => 'qlo', 'QL08p052606' => 'qlo', 'QL08p053414' => 'qlo', 'QL08p054868' => 'qlo', 'RcHm_v2.0_Chr1g0350251' => 'rch', 'RcHm_v2.0_Chr1g0360851' => 'rch', 'RcHm_v2.0_Chr1g0362791' => 'rch', 'RcHm_v2.0_Chr3g0466281' => 'rch', 'RcHm_v2.0_Chr7g0201481' => 'rch', 'Rhsim01G0148600' => 'rsi', 'Rhsim05G0194400' => 'rsi', 'Rhsim07G0000700' => 'rsi', 'Rhsim07G0000800' => 'rsi', 'Rhsim07G0027900' => 'rsi', 'Rhsim09G0149500' => 'rsi', 'RhsimUnG0186900' => 'rsi', 'Sabra01G0089900' => 'sbr', 'Sabra02G0114700' => 'sbr', 'Sabra02G0116300' => 'sbr', 'Sabra03G0080100' => 'sbr', 'Sabra08G0024300' => 'sbr', 'Sabra10G0174300' => 'sbr', 'Sabra14G0048900' => 'sbr', 'Sabra14G0076500' => 'sbr', 'SalBow5G2513' => 'sbo', 'Sc01g0002300' => 'sci', 'Sc01g0004450' => 'sci', 'Sc06g0001680' => 'sci', 'Sc23g0003580' => 'sci', 'Sed0000913' => 'sed', 'Sed0001655' => 'sed', 'Sed0007745' => 'sed', 'Sed0010951' => 'sed', 'Sed0017599' => 'sed', 'Sed0021405' => 'sed', 'Sed0022810' => 'sed', 'SEGI_07099' => 'sgi', 'SEGI_11931' => 'sgi', 'SEGI_13187' => 'sgi', 'SEGI_29958' => 'sgi', 'SEGI_36351' => 'sgi', 'SGA_v2.0_scaffold126G33770' => 'sas', 'SGA_v2.0_scaffold153G37003' => 'sas', 'SGA_v2.0_scaffold2G01359' => 'sas', 'SGA_v2.0_scaffold5G03064' => 'sas', 'SGA_v2.0_scaffold95G28903' => 'sas', 'SHI12701' => 'shi', 'SHI26410' => 'shi', 'SHI38997' => 'shi', 'SHI53759' => 'shi', 'SHI53886' => 'shi', 'SHI54714' => 'shi', 'SMO011G0041' => 'smo', 'SMO146G0251' => 'smo', 'SMO160G0004' => 'smo', 'SMO174G0057' => 'smo', 'SMO244G0089' => 'smo', 'SMO296G0011' => 'smo', 'Solyc01g091280.3' => 'sly', 'Solyc05g047610.3' => 'sly', 'Solyc05g047640.3' => 'sly', 'Solyc05g055630.3' => 'sly', 'Solyc10g018160.2' => 'sly', 'Solyc10g084820.2' => 'sly', 'Solyc10g086565.2' => 'sly', 'Sopen01g037030' => 'spe', 'Sopen05g027920' => 'spe', 'Sopen05g034070' => 'spe', 'Sopen10g007260' => 'spe', 'Sopen10g034260' => 'spe', 'Sopen10g035950' => 'spe', 'Sp3g07710' => 'spa', 'Sp4g27420' => 'spa', 'Sp5g02450' => 'spa', 'Sp6g01280' => 'spa', 'Sp6g38480' => 'spa', 'Sp7g20780' => 'spa', 'TAR374G1413' => 'tar', 'TAR623G1777' => 'tar', 'TAR629G2370' => 'tar', 'TAR633G1759' => 'tar', 'TAR636G3387' => 'tar', 'THA.LOC104802447' => 'tha', 'THA.LOC104813916' => 'tha', 'THA.LOC104816423' => 'tha', 'THA.LOC104817246' => 'tha', 'THA.LOC104825895' => 'tha', 'Thecc.01G335200' => 'tca', 'Thecc.01G377400' => 'tca', 'Thecc.03G262200' => 'tca', 'Thecc.05G036800' => 'tca', 'Thecc.10G080500' => 'tca', 'Thecc.10G080800' => 'tca', 'Thhalv10001560m.g' => 'esa', 'Thhalv10006120m.g' => 'esa', 'Thhalv10014375m.g' => 'esa', 'Thhalv10021264m.g' => 'esa', 'Thhalv10028856m.g' => 'esa', 'TPR.G1914' => 'tpr', 'TPR.G4757' => 'tpr', 'TPR.G5595' => 'tpr', 'TWI14G0952' => 'twi', 'TWI14G1307' => 'twi', 'TWI38G2143' => 'twi', 'TWI59G0826' => 'twi', 'TWI77G0527' => 'twi', 'TWI81G0150' => 'twi', 'unitig_21.g21018' => 'ugi', 'unitig_26.g9725' => 'ugi', 'unitig_744.g24653' => 'ugi', 'unitig_749.g13778' => 'ugi', 'unitig_899.g15035' => 'ugi', 'vmacro04296' => 'vma', 'vmacro04852' => 'vma', 'vmacro13404' => 'vma', 'vmacro20169' => 'vma', 'vmacro21014' => 'vma', 'VMungo0331G0237' => 'vmu', 'VMungo0331G0706' => 'vmu', 'VMungo0331G1361' => 'vmu', 'VMungo0331G1489' => 'vmu', 'VMungo0540G1037' => 'vmu', 'VMungo0720G2487' => 'vmu', 'VMungo0720G2721' => 'vmu', 'Zm00001eb086860' => 'zma', 'Zm00001eb104760' => 'zma', 'Zm00001eb148220' => 'zma', 'Zm00001eb259030' => 'zma', 'Zm00001eb289590' => 'zma', 'Zm00001eb420150' => 'zma' ), 'gf_id' => 'HOM05D000968', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000968' ), 'data_identifier' => 'HOM05D000968', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000968', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p31690' => 'bna', 'A03p36040' => 'bna', 'A03p53730' => 'bna', 'A04p01410' => 'bna', 'A05p05420' => 'bna', 'A05p39630' => 'bna', 'A05p39640' => 'bna', 'A09p00970' => 'bna', 'A09p53060' => 'bna', 'A10p31890' => 'bna', 'Aa31LG10G15040' => 'aar', 'Aa31LG1G21090' => 'aar', 'Aa31LG1G26900' => 'aar', 'Aa31LG3G1820' => 'aar', 'Aa31LG5G1100' => 'aar', 'Aa31LG6G4740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2265' => 'aag', 'Actinidia07998' => 'ach', 'Actinidia11266' => 'ach', 'Actinidia12682' => 'ach', 'Actinidia26479' => 'ach', 'Actinidia31406' => 'ach', 'Actinidia32437' => 'ach', 'Actinidia38862' => 'ach', 'Ah.05g174230' => 'amhyb', 'Ah.05g179070' => 'amhyb', 'Ah.05g179090' => 'amhyb', 'Ah.12g059950' => 'amhyb', 'AL3G20480' => 'aly', 'AL4G44520' => 'aly', 'AL5G43110' => 'aly', 'AL6G13890' => 'aly', 'AL6G52620' => 'aly', 'AL7G30830' => 'aly', 'Aqoxy1G00899' => 'aox', 'Aqoxy5G04333' => 'aox', 'Aqoxy7G00641' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3IZ0NN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4EF6AW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W9P8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79GA3M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C43NQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFCU6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G95YVJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCHK29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LU1UG8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX91RN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGB4B1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8DA0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9H7JI' => 'arhy', 'AT3G09320' => 'ath', 'AT3G60800' => 'ath', 'AT4G00840' => 'ath', 'AT4G22750' => 'ath', 'AT5G04270' => 'ath', 'ATR0090G003' => 'atr', 'ATR0559G349' => 'atr', 'ATR0680G261' => 'atr', 'ATR0810G048' => 'atr', 'Atru.chr12.831' => 'acertr', 'Atru.chr5.303' => 'acertr', 'Atru.chr5.748' => 'acertr', 'Atru.chr8.1999' => 'acertr', 'Atru.chr9.1436' => 'acertr', 'AUR62004211' => 'cqu', 'AUR62004548' => 'cqu', 'AUR62013637' => 'cqu', 'AUR62022662' => 'cqu', 'AUR62025777' => 'cqu', 'AUR62042386' => 'cqu', 'BcaB01g02310' => 'bca', 'BcaB01g06062' => 'bca', 'BcaB02g08975' => 'bca', 'BcaB02g08980' => 'bca', 'BcaC01g04228' => 'bca', 'BcaC01g06830' => 'bca', 'BcaC02g10186' => 'bca', 'BcaC02g12214' => 'bca', 'BcaC04g24101' => 'bca', 'BcaC05g29520' => 'bca', 'BcaC05g29661' => 'bca', 'BcaC06g32130' => 'bca', 'BcaC06g32131' => 'bca', 'BcaC07g40601' => 'bca', 'BcaC07g42641' => 'bca', 'BcaNung01038' => 'bca', 'BcaNung01676' => 'bca', 'BcaNung02480' => 'bca', 'BcaNung07376' => 'bca', 'BolC3t16146H' => 'bol', 'BolC3t16637H' => 'bol', 'BolC4t22257H' => 'bol', 'BolC4t24728H' => 'bol', 'BolC5t34517H' => 'bol', 'BolC7t45703H' => 'bol', 'BolC8t51166H' => 'bol', 'BolC9t53038H' => 'bol', 'BolC9t60000H' => 'bol', 'BraA01t01345Z' => 'bra', 'BraA01t01346Z' => 'bra', 'BraA01t01348Z' => 'bra', 'BraA03t12347Z' => 'bra', 'BraA03t12775Z' => 'bra', 'BraA03t14439Z' => 'bra', 'BraA04t15860Z' => 'bra', 'BraA05t19511Z' => 'bra', 'BraA05t22746Z' => 'bra', 'BraA09t35767Z' => 'bra', 'BraA09t40732Z' => 'bra', 'BraA10t45233Z' => 'bra', 'C03p38720' => 'bna', 'C03p43680' => 'bna', 'C04p06350' => 'bna', 'C04p31800' => 'bna', 'C05p58680' => 'bna', 'C07p52110' => 'bna', 'C08p35760' => 'bna', 'C09p01050' => 'bna', 'C09p72600' => 'bna', 'CAN.G106.2' => 'can', 'CAN.G1482.1' => 'can', 'CAN.G324.12' => 'can', 'CAN.G388.20' => 'can', 'CAN.G412.7' => 'can', 'CAN.G694.32' => 'can', 'CAN.G92.12' => 'can', 'CANSAT11G2353' => 'cansat', 'CANSAT21G1398' => 'cansat', 'CANSAT56G2456' => 'cansat', 'CANSAT56G3031' => 'cansat', 'CANSAT56G4539' => 'cansat', 'CARHR083680' => 'chi', 'CARHR171190' => 'chi', 'CARHR209010' => 'chi', 'CARHR229680' => 'chi', 'CARHR249490' => 'chi', 'Carub.0003s0844' => 'cru', 'Carub.0005s2755' => 'cru', 'Carub.0006s0322' => 'cru', 'Carub.0006s3586' => 'cru', 'Carub.0007s1855' => 'cru', 'Ca_07808_v3' => 'car', 'Ca_09535_v3' => 'car', 'Ca_10548_v3' => 'car', 'Ca_19913_v3' => 'car', 'Ca_19916_v3' => 'car', 'Ca_19975_v3' => 'car', 'CBR_g22876' => 'cbr', 'CBR_g22879' => 'cbr', 'CBR_g38491' => 'cbr', 'CBR_g54185' => 'cbr', 'CBR_g54190' => 'cbr', 'Cc02_g11020' => 'ccan', 'Cc02_g23920' => 'ccan', 'Cc02_g39860' => 'ccan', 'Cc02_g39870' => 'ccan', 'Cc03_g06760' => 'ccan', 'Cc06_g02450' => 'ccan', 'Cc09_g09450' => 'ccan', 'CDE02G1959' => 'cde', 'CDE04G0600' => 'cde', 'CDE07G1996' => 'cde', 'CDE07G2078' => 'cde', 'CDE11G0611' => 'cde', 'Cfa001683' => 'cfa', 'Cfa001734' => 'cfa', 'Cfa001737' => 'cfa', 'Cfa003751' => 'cfa', 'Cfa012019' => 'cfa', 'Cfa017353' => 'cfa', 'Cfa017732' => 'cfa', 'Cfa022464' => 'cfa', 'Ciclev10012400m.g' => 'ccl', 'Ciclev10021242m.g' => 'ccl', 'Ciclev10021302m.g' => 'ccl', 'Ciclev10021463m.g' => 'ccl', 'Ciclev10032359m.g' => 'ccl', 'CiPaw.01G081000' => 'cil', 'CiPaw.01G262500' => 'cil', 'CiPaw.01G269800' => 'cil', 'CiPaw.02G168400' => 'cil', 'CiPaw.05G119500' => 'cil', 'CiPaw.11G147300' => 'cil', 'ClCG01G003630' => 'cla', 'ClCG05G000510' => 'cla', 'ClCG05G002300' => 'cla', 'ClCG08G007650' => 'cla', 'ClCG10G021250' => 'cla', 'COL.COLO4_06218' => 'col', 'COL.COLO4_12538' => 'col', 'COL.COLO4_14775' => 'col', 'COL.COLO4_23875' => 'col', 'Cpa.g.sc141.16' => 'cpa', 'Cpa.g.sc169.16' => 'cpa', 'Cpa.g.sc244.4' => 'cpa', 'Cpa.g.sc244.5' => 'cpa', 'Cpa.g.sc29.87' => 'cpa', 'Cpa.g.sc53.115' => 'cpa', 'Cre03.g207502' => 'cre', 'Cre06.g277000' => 'cre', 'Cre09.g394050' => 'cre', 'CsaV3_3G007680' => 'csa', 'CsaV3_3G009710' => 'csa', 'CsaV3_3G034790' => 'csa', 'CsaV3_5G003750' => 'csa', 'CsaV3_6G036620' => 'csa', 'CSS0002288' => 'camsi', 'CSS0011250' => 'camsi', 'CSS0021619' => 'camsi', 'CSS0046701' => 'camsi', 'DCAR_006420' => 'dca', 'DCAR_006865' => 'dca', 'DCAR_008558' => 'dca', 'DCAR_028754' => 'dca', 'DCAR_028755' => 'dca', 'Dinv31218' => 'din', 'Dinv32371' => 'din', 'Dinv34250' => 'din', 'Dinv37156' => 'din', 'Dinv43704' => 'din', 'Duzib093G1811' => 'dzi', 'Duzib106G1622' => 'dzi', 'Duzib114G0504' => 'dzi', 'Duzib128G0338' => 'dzi', 'Duzib128G1577' => 'dzi', 'Duzib133G0104' => 'dzi', 'Duzib133G1080' => 'dzi', 'Duzib138G0324' => 'dzi', 'Duzib138G0394' => 'dzi', 'Duzib205G0122' => 'dzi', 'Duzib268G1020' => 'dzi', 'Duzib268G1359' => 'dzi', 'ECA232G3929' => 'eca', 'ECA236G2210' => 'eca', 'ECA236G2287' => 'eca', 'ECA240G4568' => 'eca', 'ECA247G0894' => 'eca', 'EL10Ac1g00200' => 'bvu', 'EL10Ac1g00886' => 'bvu', 'EL10As1g23091' => 'bvu', 'EL10As1g23092' => 'bvu', 'Eucgr.A01284' => 'egr', 'Eucgr.A01285' => 'egr', 'Eucgr.D02456' => 'egr', 'Eucgr.E00018' => 'egr', 'Eucgr.E01439' => 'egr', 'Eucgr.G02859' => 'egr', 'FAN01G0168' => 'fan', 'FAN01G0453' => 'fan', 'FAN01G2761' => 'fan', 'FAN02G1239' => 'fan', 'FAN03G0645' => 'fan', 'FAN03G2707' => 'fan', 'FAN03G2978' => 'fan', 'FAN04G0227' => 'fan', 'FAN06G0091' => 'fan', 'FAN06G1418' => 'fan', 'FAN06G1512' => 'fan', 'FAN06G1986' => 'fan', 'FAN06G2905' => 'fan', 'FAN06G4325' => 'fan', 'FAN08G0033' => 'fan', 'FAN09G0642' => 'fan', 'FAN10G1763' => 'fan', 'FAN10G2026' => 'fan', 'FAN10G2513' => 'fan', 'FAN10G3402' => 'fan', 'FAN10G3564' => 'fan', 'FAN10G3987' => 'fan', 'FAN13G1490' => 'fan', 'FAN14G5857' => 'fan', 'FAN18G1188' => 'fan', 'FvH4_5g00750' => 'fve', 'FvH4_6g13410' => 'fve', 'FvH4_7g11740' => 'fve', 'FvH4_7g17410' => 'fve', 'FvH4_7g18860' => 'fve', 'Glyma.01G099100' => 'gma', 'Glyma.01G142300' => 'gma', 'Glyma.03G025500' => 'gma', 'Glyma.03G069700' => 'gma', 'Glyma.03G260000' => 'gma', 'Glyma.09G269800' => 'gma', 'Glyma.10G208700' => 'gma', 'Glyma.18G220400' => 'gma', 'Glyma.20G182000' => 'gma', 'Gohir.A01G221726' => 'ghi', 'Gohir.A07G134600' => 'ghi', 'Gohir.A07G146000' => 'ghi', 'Gohir.A08G173900' => 'ghi', 'Gohir.A09G194900' => 'ghi', 'Gohir.A10G204100' => 'ghi', 'Gohir.A11G080600' => 'ghi', 'Gohir.A11G327500' => 'ghi', 'Gohir.A12G101800' => 'ghi', 'Gohir.D01G211200' => 'ghi', 'Gohir.D07G139200' => 'ghi', 'Gohir.D07G152100' => 'ghi', 'Gohir.D08G192600' => 'ghi', 'Gohir.D09G189200' => 'ghi', 'Gohir.D10G212000' => 'ghi', 'Gohir.D11G085200' => 'ghi', 'Gohir.D11G346400' => 'ghi', 'Gohir.D12G104800' => 'ghi', 'Gorai.001G151300' => 'gra', 'Gorai.001G174100' => 'gra', 'Gorai.002G257000' => 'gra', 'Gorai.004G202600' => 'gra', 'Gorai.007G090900' => 'gra', 'Gorai.007G376700' => 'gra', 'Gorai.008G114100' => 'gra', 'Gorai.011G237900' => 'gra', 'GSVIVG01005450001' => 'vvi', 'GSVIVG01016232001' => 'vvi', 'GSVIVG01026157001' => 'vvi', 'GSVIVG01027419001' => 'vvi', 'GSVIVG01027631001' => 'vvi', 'GSVIVG01034143001' => 'vvi', 'HanXRQChr03g0093921' => 'han', 'HanXRQChr04g0120001' => 'han', 'HanXRQChr04g0122561' => 'han', 'HanXRQChr09g0246851' => 'han', 'HanXRQChr10g0293311' => 'han', 'HanXRQChr13g0425231' => 'han', 'HanXRQChr16g0532571' => 'han', 'Haze_09050' => 'cav', 'Haze_15715' => 'cav', 'Haze_15716' => 'cav', 'Haze_16803' => 'cav', 'Haze_16850' => 'cav', 'Hma1.2p1_0301F.1_g118655' => 'hma', 'Hma1.2p1_0309F.1_g120590' => 'hma', 'Hma1.2p1_0936F.1_g238900' => 'hma', 'Hma1.2p1_3552F.1_g336740' => 'hma', 'HPP92_003520' => 'vpl', 'HPP92_006628' => 'vpl', 'HPP92_006645' => 'vpl', 'HPP92_014669' => 'vpl', 'HPP92_015077' => 'vpl', 'Hund16742' => 'sun', 'Hund17022' => 'sun', 'Lalb_Chr02g0152131' => 'lal', 'Lalb_Chr05g0225371' => 'lal', 'Lalb_Chr07g0189841' => 'lal', 'Lalb_Chr07g0192961' => 'lal', 'Lalb_Chr12g0208221' => 'lal', 'Lalb_Chr13g0291211' => 'lal', 'Lalb_Chr13g0291781' => 'lal', 'Lalb_Chr18g0044651' => 'lal', 'Lalb_Chr21g0313731' => 'lal', 'Lj1g0022533' => 'lja', 'Lj2A18T50' => 'lonja', 'Lj2A92G93' => 'lonja', 'Lj3A965T73' => 'lonja', 'Lj3g0000673' => 'lja', 'Lj3g0002666' => 'lja', 'Lj4g0016985' => 'lja', 'Lj5g0003625' => 'lja', 'Lj7A529G36' => 'lonja', 'Lj9A569T49' => 'lonja', 'Lj9A604T63' => 'lonja', 'Lsat_1_v5_gn_3_132060' => 'lsa', 'Lsat_1_v5_gn_4_68941' => 'lsa', 'Lsat_1_v5_gn_5_95580' => 'lsa', 'Lsat_1_v5_gn_7_161' => 'lsa', 'Lsat_1_v5_gn_7_7041' => 'lsa', 'Lsat_1_v5_gn_9_33481' => 'lsa', 'Lsat_1_v5_gn_9_68260' => 'lsa', 'Manes.01G073100' => 'mes', 'Manes.01G266300' => 'mes', 'Manes.02G033300' => 'mes', 'Manes.05G017900' => 'mes', 'Manes.05G046100' => 'mes', 'Manes.08G080900' => 'mes', 'Manes.10G049400' => 'mes', 'Mapoly0009s0186' => 'mpo', 'Mapoly0036s0118' => 'mpo', 'Mapoly0101s0046' => 'mpo', 'MBI04_g30218_MAGBIO' => 'mbi', 'MBI04_g35564_MAGBIO' => 'mbi', 'MBI12_g34011_MAGBIO' => 'mbi', 'MBI14_g04655_MAGBIO' => 'mbi', 'MCO07G653' => 'mco', 'MCO10G173' => 'mco', 'MD01G1087100' => 'mdo', 'MD01G1104200' => 'mdo', 'MD02G1205100' => 'mdo', 'MD04G1079200' => 'mdo', 'MD04G1131400' => 'mdo', 'MD07G1121600' => 'mdo', 'MD07G1157300' => 'mdo', 'MD07G1171000' => 'mdo', 'MD12G1144500' => 'mdo', 'Medtr1g094610' => 'mtr', 'Medtr4g021795' => 'mtr', 'Medtr4g023760' => 'mtr', 'Medtr7g118050' => 'mtr', 'MELO3C005582.2' => 'cme', 'MELO3C005989.2' => 'cme', 'MELO3C006192.2' => 'cme', 'MELO3C009248.2' => 'cme', 'MELO3C019817.2' => 'cme', 'Migut.B01625' => 'egut', 'Migut.B01915' => 'egut', 'Migut.F01721' => 'egut', 'Migut.J00314' => 'egut', 'MSTRG.20742' => 'ama', 'MSTRG.8134' => 'ama', 'Nitab4.5_0000096g0010' => 'nta', 'Nitab4.5_0000202g0030' => 'nta', 'Nitab4.5_0000216g0370' => 'nta', 'Nitab4.5_0000457g0230' => 'nta', 'Nitab4.5_0001702g0170' => 'nta', 'Nitab4.5_0003607g0010' => 'nta', 'Nitab4.5_0004917g0020' => 'nta', 'Nitab4.5_0007059g0010' => 'nta', 'Nitab4.5_0007184g0010' => 'nta', 'Nitab4.5_0007346g0020' => 'nta', 'Nn1g00410' => 'nnu', 'Nn1g01252' => 'nnu', 'Nn2g11168' => 'nnu', 'Nn2g13403' => 'nnu', 'Nn2g13760' => 'nnu', 'Nn4g26380' => 'nnu', 'Oeu000806.2' => 'oeu', 'Oeu005788.1' => 'oeu', 'Oeu006900.3' => 'oeu', 'Oeu007797.1' => 'oeu', 'Oeu011932.1' => 'oeu', 'Oeu022739.1' => 'oeu', 'Oeu037918.1' => 'oeu', 'Oeu055490.2' => 'oeu', 'Os01g0844400' => 'osa', 'Os02g0819100' => 'osa', 'Os03g0804300' => 'osa', 'Os05g0458000' => 'osa', 'Os07g0467800' => 'osa', 'Os12g0602200' => 'osa', 'Peaxi162Scf00013g03444' => 'pax', 'Peaxi162Scf00094g01120' => 'pax', 'Peaxi162Scf00191g01211' => 'pax', 'Peaxi162Scf00238g01110' => 'pax', 'Peaxi162Scf00330g00719' => 'pax', 'Peaxi162Scf00627g00018' => 'pax', 'PGR031G2686' => 'pgr', 'PGR042G0809' => 'pgr', 'PGR142G0193' => 'pgr', 'PGSC0003DMG400011066' => 'stu', 'PGSC0003DMG400012041' => 'stu', 'PGSC0003DMG400013678' => 'stu', 'PGSC0003DMG400023477' => 'stu', 'PGSC0003DMG400025956' => 'stu', 'PGSC0003DMG401019151' => 'stu', 'Phvul.006G116400' => 'pvu', 'Phvul.007G097300' => 'pvu', 'Phvul.010G015000' => 'pvu', 'Phvul.010G083900' => 'pvu', 'Potri.001G117100' => 'ptr', 'Potri.002G147300' => 'ptr', 'Potri.003G115600' => 'ptr', 'Potri.006G087400' => 'ptr', 'Potri.010G226100' => 'ptr', 'Potri.014G069200' => 'ptr', 'Potri.014G104000' => 'ptr', 'Potri.016G100200' => 'ptr', 'Pp3c10_20450' => 'ppa', 'Pp3c1_42400' => 'ppa', 'Pp3c3_24390' => 'ppa', 'Pp3c3_2860' => 'ppa', 'PRCOL_00003193' => 'pco', 'Prupe.2G144500' => 'ppe', 'Prupe.2G195700' => 'ppe', 'Prupe.2G209800' => 'ppe', 'Prupe.5G080000' => 'ppe', 'Prupe.6G257900' => 'ppe', 'Psat3g001160' => 'psa', 'Psat6g181880' => 'psa', 'Psat7g233720' => 'psa', 'PSO063G7587' => 'pso', 'PSO339G2145' => 'pso', 'PSO339G3369' => 'pso', 'PSO478G2747' => 'pso', 'PSO513G0140' => 'pso', 'PSO782G1614' => 'pso', 'PSO782G4889' => 'pso', 'PSO782G5485' => 'pso', 'PSO801G0241' => 'pso', 'QL07p048854' => 'qlo', 'QL08p046745' => 'qlo', 'QL08p052606' => 'qlo', 'QL08p053414' => 'qlo', 'QL08p054868' => 'qlo', 'RcHm_v2.0_Chr1g0350251' => 'rch', 'RcHm_v2.0_Chr1g0360851' => 'rch', 'RcHm_v2.0_Chr1g0362791' => 'rch', 'RcHm_v2.0_Chr3g0466281' => 'rch', 'RcHm_v2.0_Chr7g0201481' => 'rch', 'Rhsim01G0148600' => 'rsi', 'Rhsim05G0194400' => 'rsi', 'Rhsim07G0000700' => 'rsi', 'Rhsim07G0000800' => 'rsi', 'Rhsim07G0027900' => 'rsi', 'Rhsim09G0149500' => 'rsi', 'RhsimUnG0186900' => 'rsi', 'Sabra01G0089900' => 'sbr', 'Sabra02G0114700' => 'sbr', 'Sabra02G0116300' => 'sbr', 'Sabra03G0080100' => 'sbr', 'Sabra08G0024300' => 'sbr', 'Sabra10G0174300' => 'sbr', 'Sabra14G0048900' => 'sbr', 'Sabra14G0076500' => 'sbr', 'SalBow5G2513' => 'sbo', 'Sc01g0002300' => 'sci', 'Sc01g0004450' => 'sci', 'Sc06g0001680' => 'sci', 'Sc23g0003580' => 'sci', 'Sed0000913' => 'sed', 'Sed0001655' => 'sed', 'Sed0007745' => 'sed', 'Sed0010951' => 'sed', 'Sed0017599' => 'sed', 'Sed0021405' => 'sed', 'Sed0022810' => 'sed', 'SEGI_07099' => 'sgi', 'SEGI_11931' => 'sgi', 'SEGI_13187' => 'sgi', 'SEGI_29958' => 'sgi', 'SEGI_36351' => 'sgi', 'SGA_v2.0_scaffold126G33770' => 'sas', 'SGA_v2.0_scaffold153G37003' => 'sas', 'SGA_v2.0_scaffold2G01359' => 'sas', 'SGA_v2.0_scaffold5G03064' => 'sas', 'SGA_v2.0_scaffold95G28903' => 'sas', 'SHI12701' => 'shi', 'SHI26410' => 'shi', 'SHI38997' => 'shi', 'SHI53759' => 'shi', 'SHI53886' => 'shi', 'SHI54714' => 'shi', 'SMO011G0041' => 'smo', 'SMO146G0251' => 'smo', 'SMO160G0004' => 'smo', 'SMO174G0057' => 'smo', 'SMO244G0089' => 'smo', 'SMO296G0011' => 'smo', 'Solyc01g091280.3' => 'sly', 'Solyc05g047610.3' => 'sly', 'Solyc05g047640.3' => 'sly', 'Solyc05g055630.3' => 'sly', 'Solyc10g018160.2' => 'sly', 'Solyc10g084820.2' => 'sly', 'Solyc10g086565.2' => 'sly', 'Sopen01g037030' => 'spe', 'Sopen05g027920' => 'spe', 'Sopen05g034070' => 'spe', 'Sopen10g007260' => 'spe', 'Sopen10g034260' => 'spe', 'Sopen10g035950' => 'spe', 'Sp3g07710' => 'spa', 'Sp4g27420' => 'spa', 'Sp5g02450' => 'spa', 'Sp6g01280' => 'spa', 'Sp6g38480' => 'spa', 'Sp7g20780' => 'spa', 'TAR374G1413' => 'tar', 'TAR623G1777' => 'tar', 'TAR629G2370' => 'tar', 'TAR633G1759' => 'tar', 'TAR636G3387' => 'tar', 'THA.LOC104802447' => 'tha', 'THA.LOC104813916' => 'tha', 'THA.LOC104816423' => 'tha', 'THA.LOC104817246' => 'tha', 'THA.LOC104825895' => 'tha', 'Thecc.01G335200' => 'tca', 'Thecc.01G377400' => 'tca', 'Thecc.03G262200' => 'tca', 'Thecc.05G036800' => 'tca', 'Thecc.10G080500' => 'tca', 'Thecc.10G080800' => 'tca', 'Thhalv10001560m.g' => 'esa', 'Thhalv10006120m.g' => 'esa', 'Thhalv10014375m.g' => 'esa', 'Thhalv10021264m.g' => 'esa', 'Thhalv10028856m.g' => 'esa', 'TPR.G1914' => 'tpr', 'TPR.G4757' => 'tpr', 'TPR.G5595' => 'tpr', 'TWI14G0952' => 'twi', 'TWI14G1307' => 'twi', 'TWI38G2143' => 'twi', 'TWI59G0826' => 'twi', 'TWI77G0527' => 'twi', 'TWI81G0150' => 'twi', 'unitig_21.g21018' => 'ugi', 'unitig_26.g9725' => 'ugi', 'unitig_744.g24653' => 'ugi', 'unitig_749.g13778' => 'ugi', 'unitig_899.g15035' => 'ugi', 'vmacro04296' => 'vma', 'vmacro04852' => 'vma', 'vmacro13404' => 'vma', 'vmacro20169' => 'vma', 'vmacro21014' => 'vma', 'VMungo0331G0237' => 'vmu', 'VMungo0331G0706' => 'vmu', 'VMungo0331G1361' => 'vmu', 'VMungo0331G1489' => 'vmu', 'VMungo0540G1037' => 'vmu', 'VMungo0720G2487' => 'vmu', 'VMungo0720G2721' => 'vmu', 'Zm00001eb086860' => 'zma', 'Zm00001eb104760' => 'zma', 'Zm00001eb148220' => 'zma', 'Zm00001eb259030' => 'zma', 'Zm00001eb289590' => 'zma', 'Zm00001eb420150' => 'zma' ) $gf_id = 'HOM05D000968' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000968' ) $data_identifier = 'HOM05D000968' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 19, 'bol' => (int) 9, 'bra' => (int) 12, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 5, 'ccan' => (int) 7, 'cde' => (int) 5, 'cfa' => (int) 8, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 4, 'dca' => (int) 5, 'din' => (int) 5, 'dzi' => (int) 12, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 25, 'fve' => (int) 5, 'gma' => (int) 9, 'ghi' => (int) 18, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 7, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 5, 'sun' => (int) 2, 'lal' => (int) 9, 'lja' => (int) 5, 'lonja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 9, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 2, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 3, 'stu' => (int) 6, 'pvu' => (int) 4, 'ptr' => (int) 8, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 3, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 1, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 5, 'sas' => (int) 5, 'shi' => (int) 6, 'smo' => (int) 6, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 3, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420150' $species_info = array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ) $local_species = 'vvi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000968', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p31690' => 'bna', 'A03p36040' => 'bna', 'A03p53730' => 'bna', 'A04p01410' => 'bna', 'A05p05420' => 'bna', 'A05p39630' => 'bna', 'A05p39640' => 'bna', 'A09p00970' => 'bna', 'A09p53060' => 'bna', 'A10p31890' => 'bna', 'Aa31LG10G15040' => 'aar', 'Aa31LG1G21090' => 'aar', 'Aa31LG1G26900' => 'aar', 'Aa31LG3G1820' => 'aar', 'Aa31LG5G1100' => 'aar', 'Aa31LG6G4740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2265' => 'aag', 'Actinidia07998' => 'ach', 'Actinidia11266' => 'ach', 'Actinidia12682' => 'ach', 'Actinidia26479' => 'ach', 'Actinidia31406' => 'ach', 'Actinidia32437' => 'ach', 'Actinidia38862' => 'ach', 'Ah.05g174230' => 'amhyb', 'Ah.05g179070' => 'amhyb', 'Ah.05g179090' => 'amhyb', 'Ah.12g059950' => 'amhyb', 'AL3G20480' => 'aly', 'AL4G44520' => 'aly', 'AL5G43110' => 'aly', 'AL6G13890' => 'aly', 'AL6G52620' => 'aly', 'AL7G30830' => 'aly', 'Aqoxy1G00899' => 'aox', 'Aqoxy5G04333' => 'aox', 'Aqoxy7G00641' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3IZ0NN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4EF6AW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W9P8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79GA3M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C43NQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFCU6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G95YVJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCHK29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LU1UG8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX91RN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGB4B1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8DA0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9H7JI' => 'arhy', 'AT3G09320' => 'ath', 'AT3G60800' => 'ath', 'AT4G00840' => 'ath', 'AT4G22750' => 'ath', 'AT5G04270' => 'ath', 'ATR0090G003' => 'atr', 'ATR0559G349' => 'atr', 'ATR0680G261' => 'atr', 'ATR0810G048' => 'atr', 'Atru.chr12.831' => 'acertr', 'Atru.chr5.303' => 'acertr', 'Atru.chr5.748' => 'acertr', 'Atru.chr8.1999' => 'acertr', 'Atru.chr9.1436' => 'acertr', 'AUR62004211' => 'cqu', 'AUR62004548' => 'cqu', 'AUR62013637' => 'cqu', 'AUR62022662' => 'cqu', 'AUR62025777' => 'cqu', 'AUR62042386' => 'cqu', 'BcaB01g02310' => 'bca', 'BcaB01g06062' => 'bca', 'BcaB02g08975' => 'bca', 'BcaB02g08980' => 'bca', 'BcaC01g04228' => 'bca', 'BcaC01g06830' => 'bca', 'BcaC02g10186' => 'bca', 'BcaC02g12214' => 'bca', 'BcaC04g24101' => 'bca', 'BcaC05g29520' => 'bca', 'BcaC05g29661' => 'bca', 'BcaC06g32130' => 'bca', 'BcaC06g32131' => 'bca', 'BcaC07g40601' => 'bca', 'BcaC07g42641' => 'bca', 'BcaNung01038' => 'bca', 'BcaNung01676' => 'bca', 'BcaNung02480' => 'bca', 'BcaNung07376' => 'bca', 'BolC3t16146H' => 'bol', 'BolC3t16637H' => 'bol', 'BolC4t22257H' => 'bol', 'BolC4t24728H' => 'bol', 'BolC5t34517H' => 'bol', 'BolC7t45703H' => 'bol', 'BolC8t51166H' => 'bol', 'BolC9t53038H' => 'bol', 'BolC9t60000H' => 'bol', 'BraA01t01345Z' => 'bra', 'BraA01t01346Z' => 'bra', 'BraA01t01348Z' => 'bra', 'BraA03t12347Z' => 'bra', 'BraA03t12775Z' => 'bra', 'BraA03t14439Z' => 'bra', 'BraA04t15860Z' => 'bra', 'BraA05t19511Z' => 'bra', 'BraA05t22746Z' => 'bra', 'BraA09t35767Z' => 'bra', 'BraA09t40732Z' => 'bra', 'BraA10t45233Z' => 'bra', 'C03p38720' => 'bna', 'C03p43680' => 'bna', 'C04p06350' => 'bna', 'C04p31800' => 'bna', 'C05p58680' => 'bna', 'C07p52110' => 'bna', 'C08p35760' => 'bna', 'C09p01050' => 'bna', 'C09p72600' => 'bna', 'CAN.G106.2' => 'can', 'CAN.G1482.1' => 'can', 'CAN.G324.12' => 'can', 'CAN.G388.20' => 'can', 'CAN.G412.7' => 'can', 'CAN.G694.32' => 'can', 'CAN.G92.12' => 'can', 'CANSAT11G2353' => 'cansat', 'CANSAT21G1398' => 'cansat', 'CANSAT56G2456' => 'cansat', 'CANSAT56G3031' => 'cansat', 'CANSAT56G4539' => 'cansat', 'CARHR083680' => 'chi', 'CARHR171190' => 'chi', 'CARHR209010' => 'chi', 'CARHR229680' => 'chi', 'CARHR249490' => 'chi', 'Carub.0003s0844' => 'cru', 'Carub.0005s2755' => 'cru', 'Carub.0006s0322' => 'cru', 'Carub.0006s3586' => 'cru', 'Carub.0007s1855' => 'cru', 'Ca_07808_v3' => 'car', 'Ca_09535_v3' => 'car', 'Ca_10548_v3' => 'car', 'Ca_19913_v3' => 'car', 'Ca_19916_v3' => 'car', 'Ca_19975_v3' => 'car', 'CBR_g22876' => 'cbr', 'CBR_g22879' => 'cbr', 'CBR_g38491' => 'cbr', 'CBR_g54185' => 'cbr', 'CBR_g54190' => 'cbr', 'Cc02_g11020' => 'ccan', 'Cc02_g23920' => 'ccan', 'Cc02_g39860' => 'ccan', 'Cc02_g39870' => 'ccan', 'Cc03_g06760' => 'ccan', 'Cc06_g02450' => 'ccan', 'Cc09_g09450' => 'ccan', 'CDE02G1959' => 'cde', 'CDE04G0600' => 'cde', 'CDE07G1996' => 'cde', 'CDE07G2078' => 'cde', 'CDE11G0611' => 'cde', 'Cfa001683' => 'cfa', 'Cfa001734' => 'cfa', 'Cfa001737' => 'cfa', 'Cfa003751' => 'cfa', 'Cfa012019' => 'cfa', 'Cfa017353' => 'cfa', 'Cfa017732' => 'cfa', 'Cfa022464' => 'cfa', 'Ciclev10012400m.g' => 'ccl', 'Ciclev10021242m.g' => 'ccl', 'Ciclev10021302m.g' => 'ccl', 'Ciclev10021463m.g' => 'ccl', 'Ciclev10032359m.g' => 'ccl', 'CiPaw.01G081000' => 'cil', 'CiPaw.01G262500' => 'cil', 'CiPaw.01G269800' => 'cil', 'CiPaw.02G168400' => 'cil', 'CiPaw.05G119500' => 'cil', 'CiPaw.11G147300' => 'cil', 'ClCG01G003630' => 'cla', 'ClCG05G000510' => 'cla', 'ClCG05G002300' => 'cla', 'ClCG08G007650' => 'cla', 'ClCG10G021250' => 'cla', 'COL.COLO4_06218' => 'col', 'COL.COLO4_12538' => 'col', 'COL.COLO4_14775' => 'col', 'COL.COLO4_23875' => 'col', 'Cpa.g.sc141.16' => 'cpa', 'Cpa.g.sc169.16' => 'cpa', 'Cpa.g.sc244.4' => 'cpa', 'Cpa.g.sc244.5' => 'cpa', 'Cpa.g.sc29.87' => 'cpa', 'Cpa.g.sc53.115' => 'cpa', 'Cre03.g207502' => 'cre', 'Cre06.g277000' => 'cre', 'Cre09.g394050' => 'cre', 'CsaV3_3G007680' => 'csa', 'CsaV3_3G009710' => 'csa', 'CsaV3_3G034790' => 'csa', 'CsaV3_5G003750' => 'csa', 'CsaV3_6G036620' => 'csa', 'CSS0002288' => 'camsi', 'CSS0011250' => 'camsi', 'CSS0021619' => 'camsi', 'CSS0046701' => 'camsi', 'DCAR_006420' => 'dca', 'DCAR_006865' => 'dca', 'DCAR_008558' => 'dca', 'DCAR_028754' => 'dca', 'DCAR_028755' => 'dca', 'Dinv31218' => 'din', 'Dinv32371' => 'din', 'Dinv34250' => 'din', 'Dinv37156' => 'din', 'Dinv43704' => 'din', 'Duzib093G1811' => 'dzi', 'Duzib106G1622' => 'dzi', 'Duzib114G0504' => 'dzi', 'Duzib128G0338' => 'dzi', 'Duzib128G1577' => 'dzi', 'Duzib133G0104' => 'dzi', 'Duzib133G1080' => 'dzi', 'Duzib138G0324' => 'dzi', 'Duzib138G0394' => 'dzi', 'Duzib205G0122' => 'dzi', 'Duzib268G1020' => 'dzi', 'Duzib268G1359' => 'dzi', 'ECA232G3929' => 'eca', 'ECA236G2210' => 'eca', 'ECA236G2287' => 'eca', 'ECA240G4568' => 'eca', 'ECA247G0894' => 'eca', 'EL10Ac1g00200' => 'bvu', 'EL10Ac1g00886' => 'bvu', 'EL10As1g23091' => 'bvu', 'EL10As1g23092' => 'bvu', 'Eucgr.A01284' => 'egr', 'Eucgr.A01285' => 'egr', 'Eucgr.D02456' => 'egr', 'Eucgr.E00018' => 'egr', 'Eucgr.E01439' => 'egr', 'Eucgr.G02859' => 'egr', 'FAN01G0168' => 'fan', 'FAN01G0453' => 'fan', 'FAN01G2761' => 'fan', 'FAN02G1239' => 'fan', 'FAN03G0645' => 'fan', 'FAN03G2707' => 'fan', 'FAN03G2978' => 'fan', 'FAN04G0227' => 'fan', 'FAN06G0091' => 'fan', 'FAN06G1418' => 'fan', 'FAN06G1512' => 'fan', 'FAN06G1986' => 'fan', 'FAN06G2905' => 'fan', 'FAN06G4325' => 'fan', 'FAN08G0033' => 'fan', 'FAN09G0642' => 'fan', 'FAN10G1763' => 'fan', 'FAN10G2026' => 'fan', 'FAN10G2513' => 'fan', 'FAN10G3402' => 'fan', 'FAN10G3564' => 'fan', 'FAN10G3987' => 'fan', 'FAN13G1490' => 'fan', 'FAN14G5857' => 'fan', 'FAN18G1188' => 'fan', 'FvH4_5g00750' => 'fve', 'FvH4_6g13410' => 'fve', 'FvH4_7g11740' => 'fve', 'FvH4_7g17410' => 'fve', 'FvH4_7g18860' => 'fve', 'Glyma.01G099100' => 'gma', 'Glyma.01G142300' => 'gma', 'Glyma.03G025500' => 'gma', 'Glyma.03G069700' => 'gma', 'Glyma.03G260000' => 'gma', 'Glyma.09G269800' => 'gma', 'Glyma.10G208700' => 'gma', 'Glyma.18G220400' => 'gma', 'Glyma.20G182000' => 'gma', 'Gohir.A01G221726' => 'ghi', 'Gohir.A07G134600' => 'ghi', 'Gohir.A07G146000' => 'ghi', 'Gohir.A08G173900' => 'ghi', 'Gohir.A09G194900' => 'ghi', 'Gohir.A10G204100' => 'ghi', 'Gohir.A11G080600' => 'ghi', 'Gohir.A11G327500' => 'ghi', 'Gohir.A12G101800' => 'ghi', 'Gohir.D01G211200' => 'ghi', 'Gohir.D07G139200' => 'ghi', 'Gohir.D07G152100' => 'ghi', 'Gohir.D08G192600' => 'ghi', 'Gohir.D09G189200' => 'ghi', 'Gohir.D10G212000' => 'ghi', 'Gohir.D11G085200' => 'ghi', 'Gohir.D11G346400' => 'ghi', 'Gohir.D12G104800' => 'ghi', 'Gorai.001G151300' => 'gra', 'Gorai.001G174100' => 'gra', 'Gorai.002G257000' => 'gra', 'Gorai.004G202600' => 'gra', 'Gorai.007G090900' => 'gra', 'Gorai.007G376700' => 'gra', 'Gorai.008G114100' => 'gra', 'Gorai.011G237900' => 'gra', 'GSVIVG01005450001' => 'vvi', 'GSVIVG01016232001' => 'vvi', 'GSVIVG01026157001' => 'vvi', 'GSVIVG01027419001' => 'vvi', 'GSVIVG01027631001' => 'vvi', 'GSVIVG01034143001' => 'vvi', 'HanXRQChr03g0093921' => 'han', 'HanXRQChr04g0120001' => 'han', 'HanXRQChr04g0122561' => 'han', 'HanXRQChr09g0246851' => 'han', 'HanXRQChr10g0293311' => 'han', 'HanXRQChr13g0425231' => 'han', 'HanXRQChr16g0532571' => 'han', 'Haze_09050' => 'cav', 'Haze_15715' => 'cav', 'Haze_15716' => 'cav', 'Haze_16803' => 'cav', 'Haze_16850' => 'cav', 'Hma1.2p1_0301F.1_g118655' => 'hma', 'Hma1.2p1_0309F.1_g120590' => 'hma', 'Hma1.2p1_0936F.1_g238900' => 'hma', 'Hma1.2p1_3552F.1_g336740' => 'hma', 'HPP92_003520' => 'vpl', 'HPP92_006628' => 'vpl', 'HPP92_006645' => 'vpl', 'HPP92_014669' => 'vpl', 'HPP92_015077' => 'vpl', 'Hund16742' => 'sun', 'Hund17022' => 'sun', 'Lalb_Chr02g0152131' => 'lal', 'Lalb_Chr05g0225371' => 'lal', 'Lalb_Chr07g0189841' => 'lal', 'Lalb_Chr07g0192961' => 'lal', 'Lalb_Chr12g0208221' => 'lal', 'Lalb_Chr13g0291211' => 'lal', 'Lalb_Chr13g0291781' => 'lal', 'Lalb_Chr18g0044651' => 'lal', 'Lalb_Chr21g0313731' => 'lal', 'Lj1g0022533' => 'lja', 'Lj2A18T50' => 'lonja', 'Lj2A92G93' => 'lonja', 'Lj3A965T73' => 'lonja', 'Lj3g0000673' => 'lja', 'Lj3g0002666' => 'lja', 'Lj4g0016985' => 'lja', 'Lj5g0003625' => 'lja', 'Lj7A529G36' => 'lonja', 'Lj9A569T49' => 'lonja', 'Lj9A604T63' => 'lonja', 'Lsat_1_v5_gn_3_132060' => 'lsa', 'Lsat_1_v5_gn_4_68941' => 'lsa', 'Lsat_1_v5_gn_5_95580' => 'lsa', 'Lsat_1_v5_gn_7_161' => 'lsa', 'Lsat_1_v5_gn_7_7041' => 'lsa', 'Lsat_1_v5_gn_9_33481' => 'lsa', 'Lsat_1_v5_gn_9_68260' => 'lsa', 'Manes.01G073100' => 'mes', 'Manes.01G266300' => 'mes', 'Manes.02G033300' => 'mes', 'Manes.05G017900' => 'mes', 'Manes.05G046100' => 'mes', 'Manes.08G080900' => 'mes', 'Manes.10G049400' => 'mes', 'Mapoly0009s0186' => 'mpo', 'Mapoly0036s0118' => 'mpo', 'Mapoly0101s0046' => 'mpo', 'MBI04_g30218_MAGBIO' => 'mbi', 'MBI04_g35564_MAGBIO' => 'mbi', 'MBI12_g34011_MAGBIO' => 'mbi', 'MBI14_g04655_MAGBIO' => 'mbi', 'MCO07G653' => 'mco', 'MCO10G173' => 'mco', 'MD01G1087100' => 'mdo', 'MD01G1104200' => 'mdo', 'MD02G1205100' => 'mdo', 'MD04G1079200' => 'mdo', 'MD04G1131400' => 'mdo', 'MD07G1121600' => 'mdo', 'MD07G1157300' => 'mdo', 'MD07G1171000' => 'mdo', 'MD12G1144500' => 'mdo', 'Medtr1g094610' => 'mtr', 'Medtr4g021795' => 'mtr', 'Medtr4g023760' => 'mtr', 'Medtr7g118050' => 'mtr', 'MELO3C005582.2' => 'cme', 'MELO3C005989.2' => 'cme', 'MELO3C006192.2' => 'cme', 'MELO3C009248.2' => 'cme', 'MELO3C019817.2' => 'cme', 'Migut.B01625' => 'egut', 'Migut.B01915' => 'egut', 'Migut.F01721' => 'egut', 'Migut.J00314' => 'egut', 'MSTRG.20742' => 'ama', 'MSTRG.8134' => 'ama', 'Nitab4.5_0000096g0010' => 'nta', 'Nitab4.5_0000202g0030' => 'nta', 'Nitab4.5_0000216g0370' => 'nta', 'Nitab4.5_0000457g0230' => 'nta', 'Nitab4.5_0001702g0170' => 'nta', 'Nitab4.5_0003607g0010' => 'nta', 'Nitab4.5_0004917g0020' => 'nta', 'Nitab4.5_0007059g0010' => 'nta', 'Nitab4.5_0007184g0010' => 'nta', 'Nitab4.5_0007346g0020' => 'nta', 'Nn1g00410' => 'nnu', 'Nn1g01252' => 'nnu', 'Nn2g11168' => 'nnu', 'Nn2g13403' => 'nnu', 'Nn2g13760' => 'nnu', 'Nn4g26380' => 'nnu', 'Oeu000806.2' => 'oeu', 'Oeu005788.1' => 'oeu', 'Oeu006900.3' => 'oeu', 'Oeu007797.1' => 'oeu', 'Oeu011932.1' => 'oeu', 'Oeu022739.1' => 'oeu', 'Oeu037918.1' => 'oeu', 'Oeu055490.2' => 'oeu', 'Os01g0844400' => 'osa', 'Os02g0819100' => 'osa', 'Os03g0804300' => 'osa', 'Os05g0458000' => 'osa', 'Os07g0467800' => 'osa', 'Os12g0602200' => 'osa', 'Peaxi162Scf00013g03444' => 'pax', 'Peaxi162Scf00094g01120' => 'pax', 'Peaxi162Scf00191g01211' => 'pax', 'Peaxi162Scf00238g01110' => 'pax', 'Peaxi162Scf00330g00719' => 'pax', 'Peaxi162Scf00627g00018' => 'pax', 'PGR031G2686' => 'pgr', 'PGR042G0809' => 'pgr', 'PGR142G0193' => 'pgr', 'PGSC0003DMG400011066' => 'stu', 'PGSC0003DMG400012041' => 'stu', 'PGSC0003DMG400013678' => 'stu', 'PGSC0003DMG400023477' => 'stu', 'PGSC0003DMG400025956' => 'stu', 'PGSC0003DMG401019151' => 'stu', 'Phvul.006G116400' => 'pvu', 'Phvul.007G097300' => 'pvu', 'Phvul.010G015000' => 'pvu', 'Phvul.010G083900' => 'pvu', 'Potri.001G117100' => 'ptr', 'Potri.002G147300' => 'ptr', 'Potri.003G115600' => 'ptr', 'Potri.006G087400' => 'ptr', 'Potri.010G226100' => 'ptr', 'Potri.014G069200' => 'ptr', 'Potri.014G104000' => 'ptr', 'Potri.016G100200' => 'ptr', 'Pp3c10_20450' => 'ppa', 'Pp3c1_42400' => 'ppa', 'Pp3c3_24390' => 'ppa', 'Pp3c3_2860' => 'ppa', 'PRCOL_00003193' => 'pco', 'Prupe.2G144500' => 'ppe', 'Prupe.2G195700' => 'ppe', 'Prupe.2G209800' => 'ppe', 'Prupe.5G080000' => 'ppe', 'Prupe.6G257900' => 'ppe', 'Psat3g001160' => 'psa', 'Psat6g181880' => 'psa', 'Psat7g233720' => 'psa', 'PSO063G7587' => 'pso', 'PSO339G2145' => 'pso', 'PSO339G3369' => 'pso', 'PSO478G2747' => 'pso', 'PSO513G0140' => 'pso', 'PSO782G1614' => 'pso', 'PSO782G4889' => 'pso', 'PSO782G5485' => 'pso', 'PSO801G0241' => 'pso', 'QL07p048854' => 'qlo', 'QL08p046745' => 'qlo', 'QL08p052606' => 'qlo', 'QL08p053414' => 'qlo', 'QL08p054868' => 'qlo', 'RcHm_v2.0_Chr1g0350251' => 'rch', 'RcHm_v2.0_Chr1g0360851' => 'rch', 'RcHm_v2.0_Chr1g0362791' => 'rch', 'RcHm_v2.0_Chr3g0466281' => 'rch', 'RcHm_v2.0_Chr7g0201481' => 'rch', 'Rhsim01G0148600' => 'rsi', 'Rhsim05G0194400' => 'rsi', 'Rhsim07G0000700' => 'rsi', 'Rhsim07G0000800' => 'rsi', 'Rhsim07G0027900' => 'rsi', 'Rhsim09G0149500' => 'rsi', 'RhsimUnG0186900' => 'rsi', 'Sabra01G0089900' => 'sbr', 'Sabra02G0114700' => 'sbr', 'Sabra02G0116300' => 'sbr', 'Sabra03G0080100' => 'sbr', 'Sabra08G0024300' => 'sbr', 'Sabra10G0174300' => 'sbr', 'Sabra14G0048900' => 'sbr', 'Sabra14G0076500' => 'sbr', 'SalBow5G2513' => 'sbo', 'Sc01g0002300' => 'sci', 'Sc01g0004450' => 'sci', 'Sc06g0001680' => 'sci', 'Sc23g0003580' => 'sci', 'Sed0000913' => 'sed', 'Sed0001655' => 'sed', 'Sed0007745' => 'sed', 'Sed0010951' => 'sed', 'Sed0017599' => 'sed', 'Sed0021405' => 'sed', 'Sed0022810' => 'sed', 'SEGI_07099' => 'sgi', 'SEGI_11931' => 'sgi', 'SEGI_13187' => 'sgi', 'SEGI_29958' => 'sgi', 'SEGI_36351' => 'sgi', 'SGA_v2.0_scaffold126G33770' => 'sas', 'SGA_v2.0_scaffold153G37003' => 'sas', 'SGA_v2.0_scaffold2G01359' => 'sas', 'SGA_v2.0_scaffold5G03064' => 'sas', 'SGA_v2.0_scaffold95G28903' => 'sas', 'SHI12701' => 'shi', 'SHI26410' => 'shi', 'SHI38997' => 'shi', 'SHI53759' => 'shi', 'SHI53886' => 'shi', 'SHI54714' => 'shi', 'SMO011G0041' => 'smo', 'SMO146G0251' => 'smo', 'SMO160G0004' => 'smo', 'SMO174G0057' => 'smo', 'SMO244G0089' => 'smo', 'SMO296G0011' => 'smo', 'Solyc01g091280.3' => 'sly', 'Solyc05g047610.3' => 'sly', 'Solyc05g047640.3' => 'sly', 'Solyc05g055630.3' => 'sly', 'Solyc10g018160.2' => 'sly', 'Solyc10g084820.2' => 'sly', 'Solyc10g086565.2' => 'sly', 'Sopen01g037030' => 'spe', 'Sopen05g027920' => 'spe', 'Sopen05g034070' => 'spe', 'Sopen10g007260' => 'spe', 'Sopen10g034260' => 'spe', 'Sopen10g035950' => 'spe', 'Sp3g07710' => 'spa', 'Sp4g27420' => 'spa', 'Sp5g02450' => 'spa', 'Sp6g01280' => 'spa', 'Sp6g38480' => 'spa', 'Sp7g20780' => 'spa', 'TAR374G1413' => 'tar', 'TAR623G1777' => 'tar', 'TAR629G2370' => 'tar', 'TAR633G1759' => 'tar', 'TAR636G3387' => 'tar', 'THA.LOC104802447' => 'tha', 'THA.LOC104813916' => 'tha', 'THA.LOC104816423' => 'tha', 'THA.LOC104817246' => 'tha', 'THA.LOC104825895' => 'tha', 'Thecc.01G335200' => 'tca', 'Thecc.01G377400' => 'tca', 'Thecc.03G262200' => 'tca', 'Thecc.05G036800' => 'tca', 'Thecc.10G080500' => 'tca', 'Thecc.10G080800' => 'tca', 'Thhalv10001560m.g' => 'esa', 'Thhalv10006120m.g' => 'esa', 'Thhalv10014375m.g' => 'esa', 'Thhalv10021264m.g' => 'esa', 'Thhalv10028856m.g' => 'esa', 'TPR.G1914' => 'tpr', 'TPR.G4757' => 'tpr', 'TPR.G5595' => 'tpr', 'TWI14G0952' => 'twi', 'TWI14G1307' => 'twi', 'TWI38G2143' => 'twi', 'TWI59G0826' => 'twi', 'TWI77G0527' => 'twi', 'TWI81G0150' => 'twi', 'unitig_21.g21018' => 'ugi', 'unitig_26.g9725' => 'ugi', 'unitig_744.g24653' => 'ugi', 'unitig_749.g13778' => 'ugi', 'unitig_899.g15035' => 'ugi', 'vmacro04296' => 'vma', 'vmacro04852' => 'vma', 'vmacro13404' => 'vma', 'vmacro20169' => 'vma', 'vmacro21014' => 'vma', 'VMungo0331G0237' => 'vmu', 'VMungo0331G0706' => 'vmu', 'VMungo0331G1361' => 'vmu', 'VMungo0331G1489' => 'vmu', 'VMungo0540G1037' => 'vmu', 'VMungo0720G2487' => 'vmu', 'VMungo0720G2721' => 'vmu', 'Zm00001eb086860' => 'zma', 'Zm00001eb104760' => 'zma', 'Zm00001eb148220' => 'zma', 'Zm00001eb259030' => 'zma', 'Zm00001eb289590' => 'zma', 'Zm00001eb420150' => 'zma' ), 'gf_id' => 'HOM05D000968', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000968' ), 'data_identifier' => 'HOM05D000968', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000968', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p31690' => 'bna', 'A03p36040' => 'bna', 'A03p53730' => 'bna', 'A04p01410' => 'bna', 'A05p05420' => 'bna', 'A05p39630' => 'bna', 'A05p39640' => 'bna', 'A09p00970' => 'bna', 'A09p53060' => 'bna', 'A10p31890' => 'bna', 'Aa31LG10G15040' => 'aar', 'Aa31LG1G21090' => 'aar', 'Aa31LG1G26900' => 'aar', 'Aa31LG3G1820' => 'aar', 'Aa31LG5G1100' => 'aar', 'Aa31LG6G4740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2265' => 'aag', 'Actinidia07998' => 'ach', 'Actinidia11266' => 'ach', 'Actinidia12682' => 'ach', 'Actinidia26479' => 'ach', 'Actinidia31406' => 'ach', 'Actinidia32437' => 'ach', 'Actinidia38862' => 'ach', 'Ah.05g174230' => 'amhyb', 'Ah.05g179070' => 'amhyb', 'Ah.05g179090' => 'amhyb', 'Ah.12g059950' => 'amhyb', 'AL3G20480' => 'aly', 'AL4G44520' => 'aly', 'AL5G43110' => 'aly', 'AL6G13890' => 'aly', 'AL6G52620' => 'aly', 'AL7G30830' => 'aly', 'Aqoxy1G00899' => 'aox', 'Aqoxy5G04333' => 'aox', 'Aqoxy7G00641' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3IZ0NN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4EF6AW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W9P8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79GA3M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C43NQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFCU6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G95YVJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCHK29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LU1UG8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX91RN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGB4B1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8DA0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9H7JI' => 'arhy', 'AT3G09320' => 'ath', 'AT3G60800' => 'ath', 'AT4G00840' => 'ath', 'AT4G22750' => 'ath', 'AT5G04270' => 'ath', 'ATR0090G003' => 'atr', 'ATR0559G349' => 'atr', 'ATR0680G261' => 'atr', 'ATR0810G048' => 'atr', 'Atru.chr12.831' => 'acertr', 'Atru.chr5.303' => 'acertr', 'Atru.chr5.748' => 'acertr', 'Atru.chr8.1999' => 'acertr', 'Atru.chr9.1436' => 'acertr', 'AUR62004211' => 'cqu', 'AUR62004548' => 'cqu', 'AUR62013637' => 'cqu', 'AUR62022662' => 'cqu', 'AUR62025777' => 'cqu', 'AUR62042386' => 'cqu', 'BcaB01g02310' => 'bca', 'BcaB01g06062' => 'bca', 'BcaB02g08975' => 'bca', 'BcaB02g08980' => 'bca', 'BcaC01g04228' => 'bca', 'BcaC01g06830' => 'bca', 'BcaC02g10186' => 'bca', 'BcaC02g12214' => 'bca', 'BcaC04g24101' => 'bca', 'BcaC05g29520' => 'bca', 'BcaC05g29661' => 'bca', 'BcaC06g32130' => 'bca', 'BcaC06g32131' => 'bca', 'BcaC07g40601' => 'bca', 'BcaC07g42641' => 'bca', 'BcaNung01038' => 'bca', 'BcaNung01676' => 'bca', 'BcaNung02480' => 'bca', 'BcaNung07376' => 'bca', 'BolC3t16146H' => 'bol', 'BolC3t16637H' => 'bol', 'BolC4t22257H' => 'bol', 'BolC4t24728H' => 'bol', 'BolC5t34517H' => 'bol', 'BolC7t45703H' => 'bol', 'BolC8t51166H' => 'bol', 'BolC9t53038H' => 'bol', 'BolC9t60000H' => 'bol', 'BraA01t01345Z' => 'bra', 'BraA01t01346Z' => 'bra', 'BraA01t01348Z' => 'bra', 'BraA03t12347Z' => 'bra', 'BraA03t12775Z' => 'bra', 'BraA03t14439Z' => 'bra', 'BraA04t15860Z' => 'bra', 'BraA05t19511Z' => 'bra', 'BraA05t22746Z' => 'bra', 'BraA09t35767Z' => 'bra', 'BraA09t40732Z' => 'bra', 'BraA10t45233Z' => 'bra', 'C03p38720' => 'bna', 'C03p43680' => 'bna', 'C04p06350' => 'bna', 'C04p31800' => 'bna', 'C05p58680' => 'bna', 'C07p52110' => 'bna', 'C08p35760' => 'bna', 'C09p01050' => 'bna', 'C09p72600' => 'bna', 'CAN.G106.2' => 'can', 'CAN.G1482.1' => 'can', 'CAN.G324.12' => 'can', 'CAN.G388.20' => 'can', 'CAN.G412.7' => 'can', 'CAN.G694.32' => 'can', 'CAN.G92.12' => 'can', 'CANSAT11G2353' => 'cansat', 'CANSAT21G1398' => 'cansat', 'CANSAT56G2456' => 'cansat', 'CANSAT56G3031' => 'cansat', 'CANSAT56G4539' => 'cansat', 'CARHR083680' => 'chi', 'CARHR171190' => 'chi', 'CARHR209010' => 'chi', 'CARHR229680' => 'chi', 'CARHR249490' => 'chi', 'Carub.0003s0844' => 'cru', 'Carub.0005s2755' => 'cru', 'Carub.0006s0322' => 'cru', 'Carub.0006s3586' => 'cru', 'Carub.0007s1855' => 'cru', 'Ca_07808_v3' => 'car', 'Ca_09535_v3' => 'car', 'Ca_10548_v3' => 'car', 'Ca_19913_v3' => 'car', 'Ca_19916_v3' => 'car', 'Ca_19975_v3' => 'car', 'CBR_g22876' => 'cbr', 'CBR_g22879' => 'cbr', 'CBR_g38491' => 'cbr', 'CBR_g54185' => 'cbr', 'CBR_g54190' => 'cbr', 'Cc02_g11020' => 'ccan', 'Cc02_g23920' => 'ccan', 'Cc02_g39860' => 'ccan', 'Cc02_g39870' => 'ccan', 'Cc03_g06760' => 'ccan', 'Cc06_g02450' => 'ccan', 'Cc09_g09450' => 'ccan', 'CDE02G1959' => 'cde', 'CDE04G0600' => 'cde', 'CDE07G1996' => 'cde', 'CDE07G2078' => 'cde', 'CDE11G0611' => 'cde', 'Cfa001683' => 'cfa', 'Cfa001734' => 'cfa', 'Cfa001737' => 'cfa', 'Cfa003751' => 'cfa', 'Cfa012019' => 'cfa', 'Cfa017353' => 'cfa', 'Cfa017732' => 'cfa', 'Cfa022464' => 'cfa', 'Ciclev10012400m.g' => 'ccl', 'Ciclev10021242m.g' => 'ccl', 'Ciclev10021302m.g' => 'ccl', 'Ciclev10021463m.g' => 'ccl', 'Ciclev10032359m.g' => 'ccl', 'CiPaw.01G081000' => 'cil', 'CiPaw.01G262500' => 'cil', 'CiPaw.01G269800' => 'cil', 'CiPaw.02G168400' => 'cil', 'CiPaw.05G119500' => 'cil', 'CiPaw.11G147300' => 'cil', 'ClCG01G003630' => 'cla', 'ClCG05G000510' => 'cla', 'ClCG05G002300' => 'cla', 'ClCG08G007650' => 'cla', 'ClCG10G021250' => 'cla', 'COL.COLO4_06218' => 'col', 'COL.COLO4_12538' => 'col', 'COL.COLO4_14775' => 'col', 'COL.COLO4_23875' => 'col', 'Cpa.g.sc141.16' => 'cpa', 'Cpa.g.sc169.16' => 'cpa', 'Cpa.g.sc244.4' => 'cpa', 'Cpa.g.sc244.5' => 'cpa', 'Cpa.g.sc29.87' => 'cpa', 'Cpa.g.sc53.115' => 'cpa', 'Cre03.g207502' => 'cre', 'Cre06.g277000' => 'cre', 'Cre09.g394050' => 'cre', 'CsaV3_3G007680' => 'csa', 'CsaV3_3G009710' => 'csa', 'CsaV3_3G034790' => 'csa', 'CsaV3_5G003750' => 'csa', 'CsaV3_6G036620' => 'csa', 'CSS0002288' => 'camsi', 'CSS0011250' => 'camsi', 'CSS0021619' => 'camsi', 'CSS0046701' => 'camsi', 'DCAR_006420' => 'dca', 'DCAR_006865' => 'dca', 'DCAR_008558' => 'dca', 'DCAR_028754' => 'dca', 'DCAR_028755' => 'dca', 'Dinv31218' => 'din', 'Dinv32371' => 'din', 'Dinv34250' => 'din', 'Dinv37156' => 'din', 'Dinv43704' => 'din', 'Duzib093G1811' => 'dzi', 'Duzib106G1622' => 'dzi', 'Duzib114G0504' => 'dzi', 'Duzib128G0338' => 'dzi', 'Duzib128G1577' => 'dzi', 'Duzib133G0104' => 'dzi', 'Duzib133G1080' => 'dzi', 'Duzib138G0324' => 'dzi', 'Duzib138G0394' => 'dzi', 'Duzib205G0122' => 'dzi', 'Duzib268G1020' => 'dzi', 'Duzib268G1359' => 'dzi', 'ECA232G3929' => 'eca', 'ECA236G2210' => 'eca', 'ECA236G2287' => 'eca', 'ECA240G4568' => 'eca', 'ECA247G0894' => 'eca', 'EL10Ac1g00200' => 'bvu', 'EL10Ac1g00886' => 'bvu', 'EL10As1g23091' => 'bvu', 'EL10As1g23092' => 'bvu', 'Eucgr.A01284' => 'egr', 'Eucgr.A01285' => 'egr', 'Eucgr.D02456' => 'egr', 'Eucgr.E00018' => 'egr', 'Eucgr.E01439' => 'egr', 'Eucgr.G02859' => 'egr', 'FAN01G0168' => 'fan', 'FAN01G0453' => 'fan', 'FAN01G2761' => 'fan', 'FAN02G1239' => 'fan', 'FAN03G0645' => 'fan', 'FAN03G2707' => 'fan', 'FAN03G2978' => 'fan', 'FAN04G0227' => 'fan', 'FAN06G0091' => 'fan', 'FAN06G1418' => 'fan', 'FAN06G1512' => 'fan', 'FAN06G1986' => 'fan', 'FAN06G2905' => 'fan', 'FAN06G4325' => 'fan', 'FAN08G0033' => 'fan', 'FAN09G0642' => 'fan', 'FAN10G1763' => 'fan', 'FAN10G2026' => 'fan', 'FAN10G2513' => 'fan', 'FAN10G3402' => 'fan', 'FAN10G3564' => 'fan', 'FAN10G3987' => 'fan', 'FAN13G1490' => 'fan', 'FAN14G5857' => 'fan', 'FAN18G1188' => 'fan', 'FvH4_5g00750' => 'fve', 'FvH4_6g13410' => 'fve', 'FvH4_7g11740' => 'fve', 'FvH4_7g17410' => 'fve', 'FvH4_7g18860' => 'fve', 'Glyma.01G099100' => 'gma', 'Glyma.01G142300' => 'gma', 'Glyma.03G025500' => 'gma', 'Glyma.03G069700' => 'gma', 'Glyma.03G260000' => 'gma', 'Glyma.09G269800' => 'gma', 'Glyma.10G208700' => 'gma', 'Glyma.18G220400' => 'gma', 'Glyma.20G182000' => 'gma', 'Gohir.A01G221726' => 'ghi', 'Gohir.A07G134600' => 'ghi', 'Gohir.A07G146000' => 'ghi', 'Gohir.A08G173900' => 'ghi', 'Gohir.A09G194900' => 'ghi', 'Gohir.A10G204100' => 'ghi', 'Gohir.A11G080600' => 'ghi', 'Gohir.A11G327500' => 'ghi', 'Gohir.A12G101800' => 'ghi', 'Gohir.D01G211200' => 'ghi', 'Gohir.D07G139200' => 'ghi', 'Gohir.D07G152100' => 'ghi', 'Gohir.D08G192600' => 'ghi', 'Gohir.D09G189200' => 'ghi', 'Gohir.D10G212000' => 'ghi', 'Gohir.D11G085200' => 'ghi', 'Gohir.D11G346400' => 'ghi', 'Gohir.D12G104800' => 'ghi', 'Gorai.001G151300' => 'gra', 'Gorai.001G174100' => 'gra', 'Gorai.002G257000' => 'gra', 'Gorai.004G202600' => 'gra', 'Gorai.007G090900' => 'gra', 'Gorai.007G376700' => 'gra', 'Gorai.008G114100' => 'gra', 'Gorai.011G237900' => 'gra', 'GSVIVG01005450001' => 'vvi', 'GSVIVG01016232001' => 'vvi', 'GSVIVG01026157001' => 'vvi', 'GSVIVG01027419001' => 'vvi', 'GSVIVG01027631001' => 'vvi', 'GSVIVG01034143001' => 'vvi', 'HanXRQChr03g0093921' => 'han', 'HanXRQChr04g0120001' => 'han', 'HanXRQChr04g0122561' => 'han', 'HanXRQChr09g0246851' => 'han', 'HanXRQChr10g0293311' => 'han', 'HanXRQChr13g0425231' => 'han', 'HanXRQChr16g0532571' => 'han', 'Haze_09050' => 'cav', 'Haze_15715' => 'cav', 'Haze_15716' => 'cav', 'Haze_16803' => 'cav', 'Haze_16850' => 'cav', 'Hma1.2p1_0301F.1_g118655' => 'hma', 'Hma1.2p1_0309F.1_g120590' => 'hma', 'Hma1.2p1_0936F.1_g238900' => 'hma', 'Hma1.2p1_3552F.1_g336740' => 'hma', 'HPP92_003520' => 'vpl', 'HPP92_006628' => 'vpl', 'HPP92_006645' => 'vpl', 'HPP92_014669' => 'vpl', 'HPP92_015077' => 'vpl', 'Hund16742' => 'sun', 'Hund17022' => 'sun', 'Lalb_Chr02g0152131' => 'lal', 'Lalb_Chr05g0225371' => 'lal', 'Lalb_Chr07g0189841' => 'lal', 'Lalb_Chr07g0192961' => 'lal', 'Lalb_Chr12g0208221' => 'lal', 'Lalb_Chr13g0291211' => 'lal', 'Lalb_Chr13g0291781' => 'lal', 'Lalb_Chr18g0044651' => 'lal', 'Lalb_Chr21g0313731' => 'lal', 'Lj1g0022533' => 'lja', 'Lj2A18T50' => 'lonja', 'Lj2A92G93' => 'lonja', 'Lj3A965T73' => 'lonja', 'Lj3g0000673' => 'lja', 'Lj3g0002666' => 'lja', 'Lj4g0016985' => 'lja', 'Lj5g0003625' => 'lja', 'Lj7A529G36' => 'lonja', 'Lj9A569T49' => 'lonja', 'Lj9A604T63' => 'lonja', 'Lsat_1_v5_gn_3_132060' => 'lsa', 'Lsat_1_v5_gn_4_68941' => 'lsa', 'Lsat_1_v5_gn_5_95580' => 'lsa', 'Lsat_1_v5_gn_7_161' => 'lsa', 'Lsat_1_v5_gn_7_7041' => 'lsa', 'Lsat_1_v5_gn_9_33481' => 'lsa', 'Lsat_1_v5_gn_9_68260' => 'lsa', 'Manes.01G073100' => 'mes', 'Manes.01G266300' => 'mes', 'Manes.02G033300' => 'mes', 'Manes.05G017900' => 'mes', 'Manes.05G046100' => 'mes', 'Manes.08G080900' => 'mes', 'Manes.10G049400' => 'mes', 'Mapoly0009s0186' => 'mpo', 'Mapoly0036s0118' => 'mpo', 'Mapoly0101s0046' => 'mpo', 'MBI04_g30218_MAGBIO' => 'mbi', 'MBI04_g35564_MAGBIO' => 'mbi', 'MBI12_g34011_MAGBIO' => 'mbi', 'MBI14_g04655_MAGBIO' => 'mbi', 'MCO07G653' => 'mco', 'MCO10G173' => 'mco', 'MD01G1087100' => 'mdo', 'MD01G1104200' => 'mdo', 'MD02G1205100' => 'mdo', 'MD04G1079200' => 'mdo', 'MD04G1131400' => 'mdo', 'MD07G1121600' => 'mdo', 'MD07G1157300' => 'mdo', 'MD07G1171000' => 'mdo', 'MD12G1144500' => 'mdo', 'Medtr1g094610' => 'mtr', 'Medtr4g021795' => 'mtr', 'Medtr4g023760' => 'mtr', 'Medtr7g118050' => 'mtr', 'MELO3C005582.2' => 'cme', 'MELO3C005989.2' => 'cme', 'MELO3C006192.2' => 'cme', 'MELO3C009248.2' => 'cme', 'MELO3C019817.2' => 'cme', 'Migut.B01625' => 'egut', 'Migut.B01915' => 'egut', 'Migut.F01721' => 'egut', 'Migut.J00314' => 'egut', 'MSTRG.20742' => 'ama', 'MSTRG.8134' => 'ama', 'Nitab4.5_0000096g0010' => 'nta', 'Nitab4.5_0000202g0030' => 'nta', 'Nitab4.5_0000216g0370' => 'nta', 'Nitab4.5_0000457g0230' => 'nta', 'Nitab4.5_0001702g0170' => 'nta', 'Nitab4.5_0003607g0010' => 'nta', 'Nitab4.5_0004917g0020' => 'nta', 'Nitab4.5_0007059g0010' => 'nta', 'Nitab4.5_0007184g0010' => 'nta', 'Nitab4.5_0007346g0020' => 'nta', 'Nn1g00410' => 'nnu', 'Nn1g01252' => 'nnu', 'Nn2g11168' => 'nnu', 'Nn2g13403' => 'nnu', 'Nn2g13760' => 'nnu', 'Nn4g26380' => 'nnu', 'Oeu000806.2' => 'oeu', 'Oeu005788.1' => 'oeu', 'Oeu006900.3' => 'oeu', 'Oeu007797.1' => 'oeu', 'Oeu011932.1' => 'oeu', 'Oeu022739.1' => 'oeu', 'Oeu037918.1' => 'oeu', 'Oeu055490.2' => 'oeu', 'Os01g0844400' => 'osa', 'Os02g0819100' => 'osa', 'Os03g0804300' => 'osa', 'Os05g0458000' => 'osa', 'Os07g0467800' => 'osa', 'Os12g0602200' => 'osa', 'Peaxi162Scf00013g03444' => 'pax', 'Peaxi162Scf00094g01120' => 'pax', 'Peaxi162Scf00191g01211' => 'pax', 'Peaxi162Scf00238g01110' => 'pax', 'Peaxi162Scf00330g00719' => 'pax', 'Peaxi162Scf00627g00018' => 'pax', 'PGR031G2686' => 'pgr', 'PGR042G0809' => 'pgr', 'PGR142G0193' => 'pgr', 'PGSC0003DMG400011066' => 'stu', 'PGSC0003DMG400012041' => 'stu', 'PGSC0003DMG400013678' => 'stu', 'PGSC0003DMG400023477' => 'stu', 'PGSC0003DMG400025956' => 'stu', 'PGSC0003DMG401019151' => 'stu', 'Phvul.006G116400' => 'pvu', 'Phvul.007G097300' => 'pvu', 'Phvul.010G015000' => 'pvu', 'Phvul.010G083900' => 'pvu', 'Potri.001G117100' => 'ptr', 'Potri.002G147300' => 'ptr', 'Potri.003G115600' => 'ptr', 'Potri.006G087400' => 'ptr', 'Potri.010G226100' => 'ptr', 'Potri.014G069200' => 'ptr', 'Potri.014G104000' => 'ptr', 'Potri.016G100200' => 'ptr', 'Pp3c10_20450' => 'ppa', 'Pp3c1_42400' => 'ppa', 'Pp3c3_24390' => 'ppa', 'Pp3c3_2860' => 'ppa', 'PRCOL_00003193' => 'pco', 'Prupe.2G144500' => 'ppe', 'Prupe.2G195700' => 'ppe', 'Prupe.2G209800' => 'ppe', 'Prupe.5G080000' => 'ppe', 'Prupe.6G257900' => 'ppe', 'Psat3g001160' => 'psa', 'Psat6g181880' => 'psa', 'Psat7g233720' => 'psa', 'PSO063G7587' => 'pso', 'PSO339G2145' => 'pso', 'PSO339G3369' => 'pso', 'PSO478G2747' => 'pso', 'PSO513G0140' => 'pso', 'PSO782G1614' => 'pso', 'PSO782G4889' => 'pso', 'PSO782G5485' => 'pso', 'PSO801G0241' => 'pso', 'QL07p048854' => 'qlo', 'QL08p046745' => 'qlo', 'QL08p052606' => 'qlo', 'QL08p053414' => 'qlo', 'QL08p054868' => 'qlo', 'RcHm_v2.0_Chr1g0350251' => 'rch', 'RcHm_v2.0_Chr1g0360851' => 'rch', 'RcHm_v2.0_Chr1g0362791' => 'rch', 'RcHm_v2.0_Chr3g0466281' => 'rch', 'RcHm_v2.0_Chr7g0201481' => 'rch', 'Rhsim01G0148600' => 'rsi', 'Rhsim05G0194400' => 'rsi', 'Rhsim07G0000700' => 'rsi', 'Rhsim07G0000800' => 'rsi', 'Rhsim07G0027900' => 'rsi', 'Rhsim09G0149500' => 'rsi', 'RhsimUnG0186900' => 'rsi', 'Sabra01G0089900' => 'sbr', 'Sabra02G0114700' => 'sbr', 'Sabra02G0116300' => 'sbr', 'Sabra03G0080100' => 'sbr', 'Sabra08G0024300' => 'sbr', 'Sabra10G0174300' => 'sbr', 'Sabra14G0048900' => 'sbr', 'Sabra14G0076500' => 'sbr', 'SalBow5G2513' => 'sbo', 'Sc01g0002300' => 'sci', 'Sc01g0004450' => 'sci', 'Sc06g0001680' => 'sci', 'Sc23g0003580' => 'sci', 'Sed0000913' => 'sed', 'Sed0001655' => 'sed', 'Sed0007745' => 'sed', 'Sed0010951' => 'sed', 'Sed0017599' => 'sed', 'Sed0021405' => 'sed', 'Sed0022810' => 'sed', 'SEGI_07099' => 'sgi', 'SEGI_11931' => 'sgi', 'SEGI_13187' => 'sgi', 'SEGI_29958' => 'sgi', 'SEGI_36351' => 'sgi', 'SGA_v2.0_scaffold126G33770' => 'sas', 'SGA_v2.0_scaffold153G37003' => 'sas', 'SGA_v2.0_scaffold2G01359' => 'sas', 'SGA_v2.0_scaffold5G03064' => 'sas', 'SGA_v2.0_scaffold95G28903' => 'sas', 'SHI12701' => 'shi', 'SHI26410' => 'shi', 'SHI38997' => 'shi', 'SHI53759' => 'shi', 'SHI53886' => 'shi', 'SHI54714' => 'shi', 'SMO011G0041' => 'smo', 'SMO146G0251' => 'smo', 'SMO160G0004' => 'smo', 'SMO174G0057' => 'smo', 'SMO244G0089' => 'smo', 'SMO296G0011' => 'smo', 'Solyc01g091280.3' => 'sly', 'Solyc05g047610.3' => 'sly', 'Solyc05g047640.3' => 'sly', 'Solyc05g055630.3' => 'sly', 'Solyc10g018160.2' => 'sly', 'Solyc10g084820.2' => 'sly', 'Solyc10g086565.2' => 'sly', 'Sopen01g037030' => 'spe', 'Sopen05g027920' => 'spe', 'Sopen05g034070' => 'spe', 'Sopen10g007260' => 'spe', 'Sopen10g034260' => 'spe', 'Sopen10g035950' => 'spe', 'Sp3g07710' => 'spa', 'Sp4g27420' => 'spa', 'Sp5g02450' => 'spa', 'Sp6g01280' => 'spa', 'Sp6g38480' => 'spa', 'Sp7g20780' => 'spa', 'TAR374G1413' => 'tar', 'TAR623G1777' => 'tar', 'TAR629G2370' => 'tar', 'TAR633G1759' => 'tar', 'TAR636G3387' => 'tar', 'THA.LOC104802447' => 'tha', 'THA.LOC104813916' => 'tha', 'THA.LOC104816423' => 'tha', 'THA.LOC104817246' => 'tha', 'THA.LOC104825895' => 'tha', 'Thecc.01G335200' => 'tca', 'Thecc.01G377400' => 'tca', 'Thecc.03G262200' => 'tca', 'Thecc.05G036800' => 'tca', 'Thecc.10G080500' => 'tca', 'Thecc.10G080800' => 'tca', 'Thhalv10001560m.g' => 'esa', 'Thhalv10006120m.g' => 'esa', 'Thhalv10014375m.g' => 'esa', 'Thhalv10021264m.g' => 'esa', 'Thhalv10028856m.g' => 'esa', 'TPR.G1914' => 'tpr', 'TPR.G4757' => 'tpr', 'TPR.G5595' => 'tpr', 'TWI14G0952' => 'twi', 'TWI14G1307' => 'twi', 'TWI38G2143' => 'twi', 'TWI59G0826' => 'twi', 'TWI77G0527' => 'twi', 'TWI81G0150' => 'twi', 'unitig_21.g21018' => 'ugi', 'unitig_26.g9725' => 'ugi', 'unitig_744.g24653' => 'ugi', 'unitig_749.g13778' => 'ugi', 'unitig_899.g15035' => 'ugi', 'vmacro04296' => 'vma', 'vmacro04852' => 'vma', 'vmacro13404' => 'vma', 'vmacro20169' => 'vma', 'vmacro21014' => 'vma', 'VMungo0331G0237' => 'vmu', 'VMungo0331G0706' => 'vmu', 'VMungo0331G1361' => 'vmu', 'VMungo0331G1489' => 'vmu', 'VMungo0540G1037' => 'vmu', 'VMungo0720G2487' => 'vmu', 'VMungo0720G2721' => 'vmu', 'Zm00001eb086860' => 'zma', 'Zm00001eb104760' => 'zma', 'Zm00001eb148220' => 'zma', 'Zm00001eb259030' => 'zma', 'Zm00001eb289590' => 'zma', 'Zm00001eb420150' => 'zma' ) $gf_id = 'HOM05D000968' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000968' ) $data_identifier = 'HOM05D000968' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 19, 'bol' => (int) 9, 'bra' => (int) 12, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 5, 'ccan' => (int) 7, 'cde' => (int) 5, 'cfa' => (int) 8, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 4, 'dca' => (int) 5, 'din' => (int) 5, 'dzi' => (int) 12, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 25, 'fve' => (int) 5, 'gma' => (int) 9, 'ghi' => (int) 18, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 7, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 5, 'sun' => (int) 2, 'lal' => (int) 9, 'lja' => (int) 5, 'lonja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 9, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 2, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 3, 'stu' => (int) 6, 'pvu' => (int) 4, 'ptr' => (int) 8, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 3, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 1, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 5, 'sas' => (int) 5, 'shi' => (int) 6, 'smo' => (int) 6, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 3, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420150' $species_info = array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) $local_species = 'zma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000968', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p31690' => 'bna', 'A03p36040' => 'bna', 'A03p53730' => 'bna', 'A04p01410' => 'bna', 'A05p05420' => 'bna', 'A05p39630' => 'bna', 'A05p39640' => 'bna', 'A09p00970' => 'bna', 'A09p53060' => 'bna', 'A10p31890' => 'bna', 'Aa31LG10G15040' => 'aar', 'Aa31LG1G21090' => 'aar', 'Aa31LG1G26900' => 'aar', 'Aa31LG3G1820' => 'aar', 'Aa31LG5G1100' => 'aar', 'Aa31LG6G4740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2265' => 'aag', 'Actinidia07998' => 'ach', 'Actinidia11266' => 'ach', 'Actinidia12682' => 'ach', 'Actinidia26479' => 'ach', 'Actinidia31406' => 'ach', 'Actinidia32437' => 'ach', 'Actinidia38862' => 'ach', 'Ah.05g174230' => 'amhyb', 'Ah.05g179070' => 'amhyb', 'Ah.05g179090' => 'amhyb', 'Ah.12g059950' => 'amhyb', 'AL3G20480' => 'aly', 'AL4G44520' => 'aly', 'AL5G43110' => 'aly', 'AL6G13890' => 'aly', 'AL6G52620' => 'aly', 'AL7G30830' => 'aly', 'Aqoxy1G00899' => 'aox', 'Aqoxy5G04333' => 'aox', 'Aqoxy7G00641' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3IZ0NN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4EF6AW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W9P8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79GA3M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C43NQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFCU6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G95YVJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCHK29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LU1UG8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX91RN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGB4B1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8DA0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9H7JI' => 'arhy', 'AT3G09320' => 'ath', 'AT3G60800' => 'ath', 'AT4G00840' => 'ath', 'AT4G22750' => 'ath', 'AT5G04270' => 'ath', 'ATR0090G003' => 'atr', 'ATR0559G349' => 'atr', 'ATR0680G261' => 'atr', 'ATR0810G048' => 'atr', 'Atru.chr12.831' => 'acertr', 'Atru.chr5.303' => 'acertr', 'Atru.chr5.748' => 'acertr', 'Atru.chr8.1999' => 'acertr', 'Atru.chr9.1436' => 'acertr', 'AUR62004211' => 'cqu', 'AUR62004548' => 'cqu', 'AUR62013637' => 'cqu', 'AUR62022662' => 'cqu', 'AUR62025777' => 'cqu', 'AUR62042386' => 'cqu', 'BcaB01g02310' => 'bca', 'BcaB01g06062' => 'bca', 'BcaB02g08975' => 'bca', 'BcaB02g08980' => 'bca', 'BcaC01g04228' => 'bca', 'BcaC01g06830' => 'bca', 'BcaC02g10186' => 'bca', 'BcaC02g12214' => 'bca', 'BcaC04g24101' => 'bca', 'BcaC05g29520' => 'bca', 'BcaC05g29661' => 'bca', 'BcaC06g32130' => 'bca', 'BcaC06g32131' => 'bca', 'BcaC07g40601' => 'bca', 'BcaC07g42641' => 'bca', 'BcaNung01038' => 'bca', 'BcaNung01676' => 'bca', 'BcaNung02480' => 'bca', 'BcaNung07376' => 'bca', 'BolC3t16146H' => 'bol', 'BolC3t16637H' => 'bol', 'BolC4t22257H' => 'bol', 'BolC4t24728H' => 'bol', 'BolC5t34517H' => 'bol', 'BolC7t45703H' => 'bol', 'BolC8t51166H' => 'bol', 'BolC9t53038H' => 'bol', 'BolC9t60000H' => 'bol', 'BraA01t01345Z' => 'bra', 'BraA01t01346Z' => 'bra', 'BraA01t01348Z' => 'bra', 'BraA03t12347Z' => 'bra', 'BraA03t12775Z' => 'bra', 'BraA03t14439Z' => 'bra', 'BraA04t15860Z' => 'bra', 'BraA05t19511Z' => 'bra', 'BraA05t22746Z' => 'bra', 'BraA09t35767Z' => 'bra', 'BraA09t40732Z' => 'bra', 'BraA10t45233Z' => 'bra', 'C03p38720' => 'bna', 'C03p43680' => 'bna', 'C04p06350' => 'bna', 'C04p31800' => 'bna', 'C05p58680' => 'bna', 'C07p52110' => 'bna', 'C08p35760' => 'bna', 'C09p01050' => 'bna', 'C09p72600' => 'bna', 'CAN.G106.2' => 'can', 'CAN.G1482.1' => 'can', 'CAN.G324.12' => 'can', 'CAN.G388.20' => 'can', 'CAN.G412.7' => 'can', 'CAN.G694.32' => 'can', 'CAN.G92.12' => 'can', 'CANSAT11G2353' => 'cansat', 'CANSAT21G1398' => 'cansat', 'CANSAT56G2456' => 'cansat', 'CANSAT56G3031' => 'cansat', 'CANSAT56G4539' => 'cansat', 'CARHR083680' => 'chi', 'CARHR171190' => 'chi', 'CARHR209010' => 'chi', 'CARHR229680' => 'chi', 'CARHR249490' => 'chi', 'Carub.0003s0844' => 'cru', 'Carub.0005s2755' => 'cru', 'Carub.0006s0322' => 'cru', 'Carub.0006s3586' => 'cru', 'Carub.0007s1855' => 'cru', 'Ca_07808_v3' => 'car', 'Ca_09535_v3' => 'car', 'Ca_10548_v3' => 'car', 'Ca_19913_v3' => 'car', 'Ca_19916_v3' => 'car', 'Ca_19975_v3' => 'car', 'CBR_g22876' => 'cbr', 'CBR_g22879' => 'cbr', 'CBR_g38491' => 'cbr', 'CBR_g54185' => 'cbr', 'CBR_g54190' => 'cbr', 'Cc02_g11020' => 'ccan', 'Cc02_g23920' => 'ccan', 'Cc02_g39860' => 'ccan', 'Cc02_g39870' => 'ccan', 'Cc03_g06760' => 'ccan', 'Cc06_g02450' => 'ccan', 'Cc09_g09450' => 'ccan', 'CDE02G1959' => 'cde', 'CDE04G0600' => 'cde', 'CDE07G1996' => 'cde', 'CDE07G2078' => 'cde', 'CDE11G0611' => 'cde', 'Cfa001683' => 'cfa', 'Cfa001734' => 'cfa', 'Cfa001737' => 'cfa', 'Cfa003751' => 'cfa', 'Cfa012019' => 'cfa', 'Cfa017353' => 'cfa', 'Cfa017732' => 'cfa', 'Cfa022464' => 'cfa', 'Ciclev10012400m.g' => 'ccl', 'Ciclev10021242m.g' => 'ccl', 'Ciclev10021302m.g' => 'ccl', 'Ciclev10021463m.g' => 'ccl', 'Ciclev10032359m.g' => 'ccl', 'CiPaw.01G081000' => 'cil', 'CiPaw.01G262500' => 'cil', 'CiPaw.01G269800' => 'cil', 'CiPaw.02G168400' => 'cil', 'CiPaw.05G119500' => 'cil', 'CiPaw.11G147300' => 'cil', 'ClCG01G003630' => 'cla', 'ClCG05G000510' => 'cla', 'ClCG05G002300' => 'cla', 'ClCG08G007650' => 'cla', 'ClCG10G021250' => 'cla', 'COL.COLO4_06218' => 'col', 'COL.COLO4_12538' => 'col', 'COL.COLO4_14775' => 'col', 'COL.COLO4_23875' => 'col', 'Cpa.g.sc141.16' => 'cpa', 'Cpa.g.sc169.16' => 'cpa', 'Cpa.g.sc244.4' => 'cpa', 'Cpa.g.sc244.5' => 'cpa', 'Cpa.g.sc29.87' => 'cpa', 'Cpa.g.sc53.115' => 'cpa', 'Cre03.g207502' => 'cre', 'Cre06.g277000' => 'cre', 'Cre09.g394050' => 'cre', 'CsaV3_3G007680' => 'csa', 'CsaV3_3G009710' => 'csa', 'CsaV3_3G034790' => 'csa', 'CsaV3_5G003750' => 'csa', 'CsaV3_6G036620' => 'csa', 'CSS0002288' => 'camsi', 'CSS0011250' => 'camsi', 'CSS0021619' => 'camsi', 'CSS0046701' => 'camsi', 'DCAR_006420' => 'dca', 'DCAR_006865' => 'dca', 'DCAR_008558' => 'dca', 'DCAR_028754' => 'dca', 'DCAR_028755' => 'dca', 'Dinv31218' => 'din', 'Dinv32371' => 'din', 'Dinv34250' => 'din', 'Dinv37156' => 'din', 'Dinv43704' => 'din', 'Duzib093G1811' => 'dzi', 'Duzib106G1622' => 'dzi', 'Duzib114G0504' => 'dzi', 'Duzib128G0338' => 'dzi', 'Duzib128G1577' => 'dzi', 'Duzib133G0104' => 'dzi', 'Duzib133G1080' => 'dzi', 'Duzib138G0324' => 'dzi', 'Duzib138G0394' => 'dzi', 'Duzib205G0122' => 'dzi', 'Duzib268G1020' => 'dzi', 'Duzib268G1359' => 'dzi', 'ECA232G3929' => 'eca', 'ECA236G2210' => 'eca', 'ECA236G2287' => 'eca', 'ECA240G4568' => 'eca', 'ECA247G0894' => 'eca', 'EL10Ac1g00200' => 'bvu', 'EL10Ac1g00886' => 'bvu', 'EL10As1g23091' => 'bvu', 'EL10As1g23092' => 'bvu', 'Eucgr.A01284' => 'egr', 'Eucgr.A01285' => 'egr', 'Eucgr.D02456' => 'egr', 'Eucgr.E00018' => 'egr', 'Eucgr.E01439' => 'egr', 'Eucgr.G02859' => 'egr', 'FAN01G0168' => 'fan', 'FAN01G0453' => 'fan', 'FAN01G2761' => 'fan', 'FAN02G1239' => 'fan', 'FAN03G0645' => 'fan', 'FAN03G2707' => 'fan', 'FAN03G2978' => 'fan', 'FAN04G0227' => 'fan', 'FAN06G0091' => 'fan', 'FAN06G1418' => 'fan', 'FAN06G1512' => 'fan', 'FAN06G1986' => 'fan', 'FAN06G2905' => 'fan', 'FAN06G4325' => 'fan', 'FAN08G0033' => 'fan', 'FAN09G0642' => 'fan', 'FAN10G1763' => 'fan', 'FAN10G2026' => 'fan', 'FAN10G2513' => 'fan', 'FAN10G3402' => 'fan', 'FAN10G3564' => 'fan', 'FAN10G3987' => 'fan', 'FAN13G1490' => 'fan', 'FAN14G5857' => 'fan', 'FAN18G1188' => 'fan', 'FvH4_5g00750' => 'fve', 'FvH4_6g13410' => 'fve', 'FvH4_7g11740' => 'fve', 'FvH4_7g17410' => 'fve', 'FvH4_7g18860' => 'fve', 'Glyma.01G099100' => 'gma', 'Glyma.01G142300' => 'gma', 'Glyma.03G025500' => 'gma', 'Glyma.03G069700' => 'gma', 'Glyma.03G260000' => 'gma', 'Glyma.09G269800' => 'gma', 'Glyma.10G208700' => 'gma', 'Glyma.18G220400' => 'gma', 'Glyma.20G182000' => 'gma', 'Gohir.A01G221726' => 'ghi', 'Gohir.A07G134600' => 'ghi', 'Gohir.A07G146000' => 'ghi', 'Gohir.A08G173900' => 'ghi', 'Gohir.A09G194900' => 'ghi', 'Gohir.A10G204100' => 'ghi', 'Gohir.A11G080600' => 'ghi', 'Gohir.A11G327500' => 'ghi', 'Gohir.A12G101800' => 'ghi', 'Gohir.D01G211200' => 'ghi', 'Gohir.D07G139200' => 'ghi', 'Gohir.D07G152100' => 'ghi', 'Gohir.D08G192600' => 'ghi', 'Gohir.D09G189200' => 'ghi', 'Gohir.D10G212000' => 'ghi', 'Gohir.D11G085200' => 'ghi', 'Gohir.D11G346400' => 'ghi', 'Gohir.D12G104800' => 'ghi', 'Gorai.001G151300' => 'gra', 'Gorai.001G174100' => 'gra', 'Gorai.002G257000' => 'gra', 'Gorai.004G202600' => 'gra', 'Gorai.007G090900' => 'gra', 'Gorai.007G376700' => 'gra', 'Gorai.008G114100' => 'gra', 'Gorai.011G237900' => 'gra', 'GSVIVG01005450001' => 'vvi', 'GSVIVG01016232001' => 'vvi', 'GSVIVG01026157001' => 'vvi', 'GSVIVG01027419001' => 'vvi', 'GSVIVG01027631001' => 'vvi', 'GSVIVG01034143001' => 'vvi', 'HanXRQChr03g0093921' => 'han', 'HanXRQChr04g0120001' => 'han', 'HanXRQChr04g0122561' => 'han', 'HanXRQChr09g0246851' => 'han', 'HanXRQChr10g0293311' => 'han', 'HanXRQChr13g0425231' => 'han', 'HanXRQChr16g0532571' => 'han', 'Haze_09050' => 'cav', 'Haze_15715' => 'cav', 'Haze_15716' => 'cav', 'Haze_16803' => 'cav', 'Haze_16850' => 'cav', 'Hma1.2p1_0301F.1_g118655' => 'hma', 'Hma1.2p1_0309F.1_g120590' => 'hma', 'Hma1.2p1_0936F.1_g238900' => 'hma', 'Hma1.2p1_3552F.1_g336740' => 'hma', 'HPP92_003520' => 'vpl', 'HPP92_006628' => 'vpl', 'HPP92_006645' => 'vpl', 'HPP92_014669' => 'vpl', 'HPP92_015077' => 'vpl', 'Hund16742' => 'sun', 'Hund17022' => 'sun', 'Lalb_Chr02g0152131' => 'lal', 'Lalb_Chr05g0225371' => 'lal', 'Lalb_Chr07g0189841' => 'lal', 'Lalb_Chr07g0192961' => 'lal', 'Lalb_Chr12g0208221' => 'lal', 'Lalb_Chr13g0291211' => 'lal', 'Lalb_Chr13g0291781' => 'lal', 'Lalb_Chr18g0044651' => 'lal', 'Lalb_Chr21g0313731' => 'lal', 'Lj1g0022533' => 'lja', 'Lj2A18T50' => 'lonja', 'Lj2A92G93' => 'lonja', 'Lj3A965T73' => 'lonja', 'Lj3g0000673' => 'lja', 'Lj3g0002666' => 'lja', 'Lj4g0016985' => 'lja', 'Lj5g0003625' => 'lja', 'Lj7A529G36' => 'lonja', 'Lj9A569T49' => 'lonja', 'Lj9A604T63' => 'lonja', 'Lsat_1_v5_gn_3_132060' => 'lsa', 'Lsat_1_v5_gn_4_68941' => 'lsa', 'Lsat_1_v5_gn_5_95580' => 'lsa', 'Lsat_1_v5_gn_7_161' => 'lsa', 'Lsat_1_v5_gn_7_7041' => 'lsa', 'Lsat_1_v5_gn_9_33481' => 'lsa', 'Lsat_1_v5_gn_9_68260' => 'lsa', 'Manes.01G073100' => 'mes', 'Manes.01G266300' => 'mes', 'Manes.02G033300' => 'mes', 'Manes.05G017900' => 'mes', 'Manes.05G046100' => 'mes', 'Manes.08G080900' => 'mes', 'Manes.10G049400' => 'mes', 'Mapoly0009s0186' => 'mpo', 'Mapoly0036s0118' => 'mpo', 'Mapoly0101s0046' => 'mpo', 'MBI04_g30218_MAGBIO' => 'mbi', 'MBI04_g35564_MAGBIO' => 'mbi', 'MBI12_g34011_MAGBIO' => 'mbi', 'MBI14_g04655_MAGBIO' => 'mbi', 'MCO07G653' => 'mco', 'MCO10G173' => 'mco', 'MD01G1087100' => 'mdo', 'MD01G1104200' => 'mdo', 'MD02G1205100' => 'mdo', 'MD04G1079200' => 'mdo', 'MD04G1131400' => 'mdo', 'MD07G1121600' => 'mdo', 'MD07G1157300' => 'mdo', 'MD07G1171000' => 'mdo', 'MD12G1144500' => 'mdo', 'Medtr1g094610' => 'mtr', 'Medtr4g021795' => 'mtr', 'Medtr4g023760' => 'mtr', 'Medtr7g118050' => 'mtr', 'MELO3C005582.2' => 'cme', 'MELO3C005989.2' => 'cme', 'MELO3C006192.2' => 'cme', 'MELO3C009248.2' => 'cme', 'MELO3C019817.2' => 'cme', 'Migut.B01625' => 'egut', 'Migut.B01915' => 'egut', 'Migut.F01721' => 'egut', 'Migut.J00314' => 'egut', 'MSTRG.20742' => 'ama', 'MSTRG.8134' => 'ama', 'Nitab4.5_0000096g0010' => 'nta', 'Nitab4.5_0000202g0030' => 'nta', 'Nitab4.5_0000216g0370' => 'nta', 'Nitab4.5_0000457g0230' => 'nta', 'Nitab4.5_0001702g0170' => 'nta', 'Nitab4.5_0003607g0010' => 'nta', 'Nitab4.5_0004917g0020' => 'nta', 'Nitab4.5_0007059g0010' => 'nta', 'Nitab4.5_0007184g0010' => 'nta', 'Nitab4.5_0007346g0020' => 'nta', 'Nn1g00410' => 'nnu', 'Nn1g01252' => 'nnu', 'Nn2g11168' => 'nnu', 'Nn2g13403' => 'nnu', 'Nn2g13760' => 'nnu', 'Nn4g26380' => 'nnu', 'Oeu000806.2' => 'oeu', 'Oeu005788.1' => 'oeu', 'Oeu006900.3' => 'oeu', 'Oeu007797.1' => 'oeu', 'Oeu011932.1' => 'oeu', 'Oeu022739.1' => 'oeu', 'Oeu037918.1' => 'oeu', 'Oeu055490.2' => 'oeu', 'Os01g0844400' => 'osa', 'Os02g0819100' => 'osa', 'Os03g0804300' => 'osa', 'Os05g0458000' => 'osa', 'Os07g0467800' => 'osa', 'Os12g0602200' => 'osa', 'Peaxi162Scf00013g03444' => 'pax', 'Peaxi162Scf00094g01120' => 'pax', 'Peaxi162Scf00191g01211' => 'pax', 'Peaxi162Scf00238g01110' => 'pax', 'Peaxi162Scf00330g00719' => 'pax', 'Peaxi162Scf00627g00018' => 'pax', 'PGR031G2686' => 'pgr', 'PGR042G0809' => 'pgr', 'PGR142G0193' => 'pgr', 'PGSC0003DMG400011066' => 'stu', 'PGSC0003DMG400012041' => 'stu', 'PGSC0003DMG400013678' => 'stu', 'PGSC0003DMG400023477' => 'stu', 'PGSC0003DMG400025956' => 'stu', 'PGSC0003DMG401019151' => 'stu', 'Phvul.006G116400' => 'pvu', 'Phvul.007G097300' => 'pvu', 'Phvul.010G015000' => 'pvu', 'Phvul.010G083900' => 'pvu', 'Potri.001G117100' => 'ptr', 'Potri.002G147300' => 'ptr', 'Potri.003G115600' => 'ptr', 'Potri.006G087400' => 'ptr', 'Potri.010G226100' => 'ptr', 'Potri.014G069200' => 'ptr', 'Potri.014G104000' => 'ptr', 'Potri.016G100200' => 'ptr', 'Pp3c10_20450' => 'ppa', 'Pp3c1_42400' => 'ppa', 'Pp3c3_24390' => 'ppa', 'Pp3c3_2860' => 'ppa', 'PRCOL_00003193' => 'pco', 'Prupe.2G144500' => 'ppe', 'Prupe.2G195700' => 'ppe', 'Prupe.2G209800' => 'ppe', 'Prupe.5G080000' => 'ppe', 'Prupe.6G257900' => 'ppe', 'Psat3g001160' => 'psa', 'Psat6g181880' => 'psa', 'Psat7g233720' => 'psa', 'PSO063G7587' => 'pso', 'PSO339G2145' => 'pso', 'PSO339G3369' => 'pso', 'PSO478G2747' => 'pso', 'PSO513G0140' => 'pso', 'PSO782G1614' => 'pso', 'PSO782G4889' => 'pso', 'PSO782G5485' => 'pso', 'PSO801G0241' => 'pso', 'QL07p048854' => 'qlo', 'QL08p046745' => 'qlo', 'QL08p052606' => 'qlo', 'QL08p053414' => 'qlo', 'QL08p054868' => 'qlo', 'RcHm_v2.0_Chr1g0350251' => 'rch', 'RcHm_v2.0_Chr1g0360851' => 'rch', 'RcHm_v2.0_Chr1g0362791' => 'rch', 'RcHm_v2.0_Chr3g0466281' => 'rch', 'RcHm_v2.0_Chr7g0201481' => 'rch', 'Rhsim01G0148600' => 'rsi', 'Rhsim05G0194400' => 'rsi', 'Rhsim07G0000700' => 'rsi', 'Rhsim07G0000800' => 'rsi', 'Rhsim07G0027900' => 'rsi', 'Rhsim09G0149500' => 'rsi', 'RhsimUnG0186900' => 'rsi', 'Sabra01G0089900' => 'sbr', 'Sabra02G0114700' => 'sbr', 'Sabra02G0116300' => 'sbr', 'Sabra03G0080100' => 'sbr', 'Sabra08G0024300' => 'sbr', 'Sabra10G0174300' => 'sbr', 'Sabra14G0048900' => 'sbr', 'Sabra14G0076500' => 'sbr', 'SalBow5G2513' => 'sbo', 'Sc01g0002300' => 'sci', 'Sc01g0004450' => 'sci', 'Sc06g0001680' => 'sci', 'Sc23g0003580' => 'sci', 'Sed0000913' => 'sed', 'Sed0001655' => 'sed', 'Sed0007745' => 'sed', 'Sed0010951' => 'sed', 'Sed0017599' => 'sed', 'Sed0021405' => 'sed', 'Sed0022810' => 'sed', 'SEGI_07099' => 'sgi', 'SEGI_11931' => 'sgi', 'SEGI_13187' => 'sgi', 'SEGI_29958' => 'sgi', 'SEGI_36351' => 'sgi', 'SGA_v2.0_scaffold126G33770' => 'sas', 'SGA_v2.0_scaffold153G37003' => 'sas', 'SGA_v2.0_scaffold2G01359' => 'sas', 'SGA_v2.0_scaffold5G03064' => 'sas', 'SGA_v2.0_scaffold95G28903' => 'sas', 'SHI12701' => 'shi', 'SHI26410' => 'shi', 'SHI38997' => 'shi', 'SHI53759' => 'shi', 'SHI53886' => 'shi', 'SHI54714' => 'shi', 'SMO011G0041' => 'smo', 'SMO146G0251' => 'smo', 'SMO160G0004' => 'smo', 'SMO174G0057' => 'smo', 'SMO244G0089' => 'smo', 'SMO296G0011' => 'smo', 'Solyc01g091280.3' => 'sly', 'Solyc05g047610.3' => 'sly', 'Solyc05g047640.3' => 'sly', 'Solyc05g055630.3' => 'sly', 'Solyc10g018160.2' => 'sly', 'Solyc10g084820.2' => 'sly', 'Solyc10g086565.2' => 'sly', 'Sopen01g037030' => 'spe', 'Sopen05g027920' => 'spe', 'Sopen05g034070' => 'spe', 'Sopen10g007260' => 'spe', 'Sopen10g034260' => 'spe', 'Sopen10g035950' => 'spe', 'Sp3g07710' => 'spa', 'Sp4g27420' => 'spa', 'Sp5g02450' => 'spa', 'Sp6g01280' => 'spa', 'Sp6g38480' => 'spa', 'Sp7g20780' => 'spa', 'TAR374G1413' => 'tar', 'TAR623G1777' => 'tar', 'TAR629G2370' => 'tar', 'TAR633G1759' => 'tar', 'TAR636G3387' => 'tar', 'THA.LOC104802447' => 'tha', 'THA.LOC104813916' => 'tha', 'THA.LOC104816423' => 'tha', 'THA.LOC104817246' => 'tha', 'THA.LOC104825895' => 'tha', 'Thecc.01G335200' => 'tca', 'Thecc.01G377400' => 'tca', 'Thecc.03G262200' => 'tca', 'Thecc.05G036800' => 'tca', 'Thecc.10G080500' => 'tca', 'Thecc.10G080800' => 'tca', 'Thhalv10001560m.g' => 'esa', 'Thhalv10006120m.g' => 'esa', 'Thhalv10014375m.g' => 'esa', 'Thhalv10021264m.g' => 'esa', 'Thhalv10028856m.g' => 'esa', 'TPR.G1914' => 'tpr', 'TPR.G4757' => 'tpr', 'TPR.G5595' => 'tpr', 'TWI14G0952' => 'twi', 'TWI14G1307' => 'twi', 'TWI38G2143' => 'twi', 'TWI59G0826' => 'twi', 'TWI77G0527' => 'twi', 'TWI81G0150' => 'twi', 'unitig_21.g21018' => 'ugi', 'unitig_26.g9725' => 'ugi', 'unitig_744.g24653' => 'ugi', 'unitig_749.g13778' => 'ugi', 'unitig_899.g15035' => 'ugi', 'vmacro04296' => 'vma', 'vmacro04852' => 'vma', 'vmacro13404' => 'vma', 'vmacro20169' => 'vma', 'vmacro21014' => 'vma', 'VMungo0331G0237' => 'vmu', 'VMungo0331G0706' => 'vmu', 'VMungo0331G1361' => 'vmu', 'VMungo0331G1489' => 'vmu', 'VMungo0540G1037' => 'vmu', 'VMungo0720G2487' => 'vmu', 'VMungo0720G2721' => 'vmu', 'Zm00001eb086860' => 'zma', 'Zm00001eb104760' => 'zma', 'Zm00001eb148220' => 'zma', 'Zm00001eb259030' => 'zma', 'Zm00001eb289590' => 'zma', 'Zm00001eb420150' => 'zma' ), 'gf_id' => 'HOM05D000968', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000968' ), 'data_identifier' => 'HOM05D000968', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000968', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '618', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p31690' => 'bna', 'A03p36040' => 'bna', 'A03p53730' => 'bna', 'A04p01410' => 'bna', 'A05p05420' => 'bna', 'A05p39630' => 'bna', 'A05p39640' => 'bna', 'A09p00970' => 'bna', 'A09p53060' => 'bna', 'A10p31890' => 'bna', 'Aa31LG10G15040' => 'aar', 'Aa31LG1G21090' => 'aar', 'Aa31LG1G26900' => 'aar', 'Aa31LG3G1820' => 'aar', 'Aa31LG5G1100' => 'aar', 'Aa31LG6G4740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2265' => 'aag', 'Actinidia07998' => 'ach', 'Actinidia11266' => 'ach', 'Actinidia12682' => 'ach', 'Actinidia26479' => 'ach', 'Actinidia31406' => 'ach', 'Actinidia32437' => 'ach', 'Actinidia38862' => 'ach', 'Ah.05g174230' => 'amhyb', 'Ah.05g179070' => 'amhyb', 'Ah.05g179090' => 'amhyb', 'Ah.12g059950' => 'amhyb', 'AL3G20480' => 'aly', 'AL4G44520' => 'aly', 'AL5G43110' => 'aly', 'AL6G13890' => 'aly', 'AL6G52620' => 'aly', 'AL7G30830' => 'aly', 'Aqoxy1G00899' => 'aox', 'Aqoxy5G04333' => 'aox', 'Aqoxy7G00641' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3IZ0NN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4EF6AW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5W9P8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79GA3M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C43NQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFCU6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G95YVJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCHK29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LU1UG8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX91RN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NGB4B1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X8DA0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9H7JI' => 'arhy', 'AT3G09320' => 'ath', 'AT3G60800' => 'ath', 'AT4G00840' => 'ath', 'AT4G22750' => 'ath', 'AT5G04270' => 'ath', 'ATR0090G003' => 'atr', 'ATR0559G349' => 'atr', 'ATR0680G261' => 'atr', 'ATR0810G048' => 'atr', 'Atru.chr12.831' => 'acertr', 'Atru.chr5.303' => 'acertr', 'Atru.chr5.748' => 'acertr', 'Atru.chr8.1999' => 'acertr', 'Atru.chr9.1436' => 'acertr', 'AUR62004211' => 'cqu', 'AUR62004548' => 'cqu', 'AUR62013637' => 'cqu', 'AUR62022662' => 'cqu', 'AUR62025777' => 'cqu', 'AUR62042386' => 'cqu', 'BcaB01g02310' => 'bca', 'BcaB01g06062' => 'bca', 'BcaB02g08975' => 'bca', 'BcaB02g08980' => 'bca', 'BcaC01g04228' => 'bca', 'BcaC01g06830' => 'bca', 'BcaC02g10186' => 'bca', 'BcaC02g12214' => 'bca', 'BcaC04g24101' => 'bca', 'BcaC05g29520' => 'bca', 'BcaC05g29661' => 'bca', 'BcaC06g32130' => 'bca', 'BcaC06g32131' => 'bca', 'BcaC07g40601' => 'bca', 'BcaC07g42641' => 'bca', 'BcaNung01038' => 'bca', 'BcaNung01676' => 'bca', 'BcaNung02480' => 'bca', 'BcaNung07376' => 'bca', 'BolC3t16146H' => 'bol', 'BolC3t16637H' => 'bol', 'BolC4t22257H' => 'bol', 'BolC4t24728H' => 'bol', 'BolC5t34517H' => 'bol', 'BolC7t45703H' => 'bol', 'BolC8t51166H' => 'bol', 'BolC9t53038H' => 'bol', 'BolC9t60000H' => 'bol', 'BraA01t01345Z' => 'bra', 'BraA01t01346Z' => 'bra', 'BraA01t01348Z' => 'bra', 'BraA03t12347Z' => 'bra', 'BraA03t12775Z' => 'bra', 'BraA03t14439Z' => 'bra', 'BraA04t15860Z' => 'bra', 'BraA05t19511Z' => 'bra', 'BraA05t22746Z' => 'bra', 'BraA09t35767Z' => 'bra', 'BraA09t40732Z' => 'bra', 'BraA10t45233Z' => 'bra', 'C03p38720' => 'bna', 'C03p43680' => 'bna', 'C04p06350' => 'bna', 'C04p31800' => 'bna', 'C05p58680' => 'bna', 'C07p52110' => 'bna', 'C08p35760' => 'bna', 'C09p01050' => 'bna', 'C09p72600' => 'bna', 'CAN.G106.2' => 'can', 'CAN.G1482.1' => 'can', 'CAN.G324.12' => 'can', 'CAN.G388.20' => 'can', 'CAN.G412.7' => 'can', 'CAN.G694.32' => 'can', 'CAN.G92.12' => 'can', 'CANSAT11G2353' => 'cansat', 'CANSAT21G1398' => 'cansat', 'CANSAT56G2456' => 'cansat', 'CANSAT56G3031' => 'cansat', 'CANSAT56G4539' => 'cansat', 'CARHR083680' => 'chi', 'CARHR171190' => 'chi', 'CARHR209010' => 'chi', 'CARHR229680' => 'chi', 'CARHR249490' => 'chi', 'Carub.0003s0844' => 'cru', 'Carub.0005s2755' => 'cru', 'Carub.0006s0322' => 'cru', 'Carub.0006s3586' => 'cru', 'Carub.0007s1855' => 'cru', 'Ca_07808_v3' => 'car', 'Ca_09535_v3' => 'car', 'Ca_10548_v3' => 'car', 'Ca_19913_v3' => 'car', 'Ca_19916_v3' => 'car', 'Ca_19975_v3' => 'car', 'CBR_g22876' => 'cbr', 'CBR_g22879' => 'cbr', 'CBR_g38491' => 'cbr', 'CBR_g54185' => 'cbr', 'CBR_g54190' => 'cbr', 'Cc02_g11020' => 'ccan', 'Cc02_g23920' => 'ccan', 'Cc02_g39860' => 'ccan', 'Cc02_g39870' => 'ccan', 'Cc03_g06760' => 'ccan', 'Cc06_g02450' => 'ccan', 'Cc09_g09450' => 'ccan', 'CDE02G1959' => 'cde', 'CDE04G0600' => 'cde', 'CDE07G1996' => 'cde', 'CDE07G2078' => 'cde', 'CDE11G0611' => 'cde', 'Cfa001683' => 'cfa', 'Cfa001734' => 'cfa', 'Cfa001737' => 'cfa', 'Cfa003751' => 'cfa', 'Cfa012019' => 'cfa', 'Cfa017353' => 'cfa', 'Cfa017732' => 'cfa', 'Cfa022464' => 'cfa', 'Ciclev10012400m.g' => 'ccl', 'Ciclev10021242m.g' => 'ccl', 'Ciclev10021302m.g' => 'ccl', 'Ciclev10021463m.g' => 'ccl', 'Ciclev10032359m.g' => 'ccl', 'CiPaw.01G081000' => 'cil', 'CiPaw.01G262500' => 'cil', 'CiPaw.01G269800' => 'cil', 'CiPaw.02G168400' => 'cil', 'CiPaw.05G119500' => 'cil', 'CiPaw.11G147300' => 'cil', 'ClCG01G003630' => 'cla', 'ClCG05G000510' => 'cla', 'ClCG05G002300' => 'cla', 'ClCG08G007650' => 'cla', 'ClCG10G021250' => 'cla', 'COL.COLO4_06218' => 'col', 'COL.COLO4_12538' => 'col', 'COL.COLO4_14775' => 'col', 'COL.COLO4_23875' => 'col', 'Cpa.g.sc141.16' => 'cpa', 'Cpa.g.sc169.16' => 'cpa', 'Cpa.g.sc244.4' => 'cpa', 'Cpa.g.sc244.5' => 'cpa', 'Cpa.g.sc29.87' => 'cpa', 'Cpa.g.sc53.115' => 'cpa', 'Cre03.g207502' => 'cre', 'Cre06.g277000' => 'cre', 'Cre09.g394050' => 'cre', 'CsaV3_3G007680' => 'csa', 'CsaV3_3G009710' => 'csa', 'CsaV3_3G034790' => 'csa', 'CsaV3_5G003750' => 'csa', 'CsaV3_6G036620' => 'csa', 'CSS0002288' => 'camsi', 'CSS0011250' => 'camsi', 'CSS0021619' => 'camsi', 'CSS0046701' => 'camsi', 'DCAR_006420' => 'dca', 'DCAR_006865' => 'dca', 'DCAR_008558' => 'dca', 'DCAR_028754' => 'dca', 'DCAR_028755' => 'dca', 'Dinv31218' => 'din', 'Dinv32371' => 'din', 'Dinv34250' => 'din', 'Dinv37156' => 'din', 'Dinv43704' => 'din', 'Duzib093G1811' => 'dzi', 'Duzib106G1622' => 'dzi', 'Duzib114G0504' => 'dzi', 'Duzib128G0338' => 'dzi', 'Duzib128G1577' => 'dzi', 'Duzib133G0104' => 'dzi', 'Duzib133G1080' => 'dzi', 'Duzib138G0324' => 'dzi', 'Duzib138G0394' => 'dzi', 'Duzib205G0122' => 'dzi', 'Duzib268G1020' => 'dzi', 'Duzib268G1359' => 'dzi', 'ECA232G3929' => 'eca', 'ECA236G2210' => 'eca', 'ECA236G2287' => 'eca', 'ECA240G4568' => 'eca', 'ECA247G0894' => 'eca', 'EL10Ac1g00200' => 'bvu', 'EL10Ac1g00886' => 'bvu', 'EL10As1g23091' => 'bvu', 'EL10As1g23092' => 'bvu', 'Eucgr.A01284' => 'egr', 'Eucgr.A01285' => 'egr', 'Eucgr.D02456' => 'egr', 'Eucgr.E00018' => 'egr', 'Eucgr.E01439' => 'egr', 'Eucgr.G02859' => 'egr', 'FAN01G0168' => 'fan', 'FAN01G0453' => 'fan', 'FAN01G2761' => 'fan', 'FAN02G1239' => 'fan', 'FAN03G0645' => 'fan', 'FAN03G2707' => 'fan', 'FAN03G2978' => 'fan', 'FAN04G0227' => 'fan', 'FAN06G0091' => 'fan', 'FAN06G1418' => 'fan', 'FAN06G1512' => 'fan', 'FAN06G1986' => 'fan', 'FAN06G2905' => 'fan', 'FAN06G4325' => 'fan', 'FAN08G0033' => 'fan', 'FAN09G0642' => 'fan', 'FAN10G1763' => 'fan', 'FAN10G2026' => 'fan', 'FAN10G2513' => 'fan', 'FAN10G3402' => 'fan', 'FAN10G3564' => 'fan', 'FAN10G3987' => 'fan', 'FAN13G1490' => 'fan', 'FAN14G5857' => 'fan', 'FAN18G1188' => 'fan', 'FvH4_5g00750' => 'fve', 'FvH4_6g13410' => 'fve', 'FvH4_7g11740' => 'fve', 'FvH4_7g17410' => 'fve', 'FvH4_7g18860' => 'fve', 'Glyma.01G099100' => 'gma', 'Glyma.01G142300' => 'gma', 'Glyma.03G025500' => 'gma', 'Glyma.03G069700' => 'gma', 'Glyma.03G260000' => 'gma', 'Glyma.09G269800' => 'gma', 'Glyma.10G208700' => 'gma', 'Glyma.18G220400' => 'gma', 'Glyma.20G182000' => 'gma', 'Gohir.A01G221726' => 'ghi', 'Gohir.A07G134600' => 'ghi', 'Gohir.A07G146000' => 'ghi', 'Gohir.A08G173900' => 'ghi', 'Gohir.A09G194900' => 'ghi', 'Gohir.A10G204100' => 'ghi', 'Gohir.A11G080600' => 'ghi', 'Gohir.A11G327500' => 'ghi', 'Gohir.A12G101800' => 'ghi', 'Gohir.D01G211200' => 'ghi', 'Gohir.D07G139200' => 'ghi', 'Gohir.D07G152100' => 'ghi', 'Gohir.D08G192600' => 'ghi', 'Gohir.D09G189200' => 'ghi', 'Gohir.D10G212000' => 'ghi', 'Gohir.D11G085200' => 'ghi', 'Gohir.D11G346400' => 'ghi', 'Gohir.D12G104800' => 'ghi', 'Gorai.001G151300' => 'gra', 'Gorai.001G174100' => 'gra', 'Gorai.002G257000' => 'gra', 'Gorai.004G202600' => 'gra', 'Gorai.007G090900' => 'gra', 'Gorai.007G376700' => 'gra', 'Gorai.008G114100' => 'gra', 'Gorai.011G237900' => 'gra', 'GSVIVG01005450001' => 'vvi', 'GSVIVG01016232001' => 'vvi', 'GSVIVG01026157001' => 'vvi', 'GSVIVG01027419001' => 'vvi', 'GSVIVG01027631001' => 'vvi', 'GSVIVG01034143001' => 'vvi', 'HanXRQChr03g0093921' => 'han', 'HanXRQChr04g0120001' => 'han', 'HanXRQChr04g0122561' => 'han', 'HanXRQChr09g0246851' => 'han', 'HanXRQChr10g0293311' => 'han', 'HanXRQChr13g0425231' => 'han', 'HanXRQChr16g0532571' => 'han', 'Haze_09050' => 'cav', 'Haze_15715' => 'cav', 'Haze_15716' => 'cav', 'Haze_16803' => 'cav', 'Haze_16850' => 'cav', 'Hma1.2p1_0301F.1_g118655' => 'hma', 'Hma1.2p1_0309F.1_g120590' => 'hma', 'Hma1.2p1_0936F.1_g238900' => 'hma', 'Hma1.2p1_3552F.1_g336740' => 'hma', 'HPP92_003520' => 'vpl', 'HPP92_006628' => 'vpl', 'HPP92_006645' => 'vpl', 'HPP92_014669' => 'vpl', 'HPP92_015077' => 'vpl', 'Hund16742' => 'sun', 'Hund17022' => 'sun', 'Lalb_Chr02g0152131' => 'lal', 'Lalb_Chr05g0225371' => 'lal', 'Lalb_Chr07g0189841' => 'lal', 'Lalb_Chr07g0192961' => 'lal', 'Lalb_Chr12g0208221' => 'lal', 'Lalb_Chr13g0291211' => 'lal', 'Lalb_Chr13g0291781' => 'lal', 'Lalb_Chr18g0044651' => 'lal', 'Lalb_Chr21g0313731' => 'lal', 'Lj1g0022533' => 'lja', 'Lj2A18T50' => 'lonja', 'Lj2A92G93' => 'lonja', 'Lj3A965T73' => 'lonja', 'Lj3g0000673' => 'lja', 'Lj3g0002666' => 'lja', 'Lj4g0016985' => 'lja', 'Lj5g0003625' => 'lja', 'Lj7A529G36' => 'lonja', 'Lj9A569T49' => 'lonja', 'Lj9A604T63' => 'lonja', 'Lsat_1_v5_gn_3_132060' => 'lsa', 'Lsat_1_v5_gn_4_68941' => 'lsa', 'Lsat_1_v5_gn_5_95580' => 'lsa', 'Lsat_1_v5_gn_7_161' => 'lsa', 'Lsat_1_v5_gn_7_7041' => 'lsa', 'Lsat_1_v5_gn_9_33481' => 'lsa', 'Lsat_1_v5_gn_9_68260' => 'lsa', 'Manes.01G073100' => 'mes', 'Manes.01G266300' => 'mes', 'Manes.02G033300' => 'mes', 'Manes.05G017900' => 'mes', 'Manes.05G046100' => 'mes', 'Manes.08G080900' => 'mes', 'Manes.10G049400' => 'mes', 'Mapoly0009s0186' => 'mpo', 'Mapoly0036s0118' => 'mpo', 'Mapoly0101s0046' => 'mpo', 'MBI04_g30218_MAGBIO' => 'mbi', 'MBI04_g35564_MAGBIO' => 'mbi', 'MBI12_g34011_MAGBIO' => 'mbi', 'MBI14_g04655_MAGBIO' => 'mbi', 'MCO07G653' => 'mco', 'MCO10G173' => 'mco', 'MD01G1087100' => 'mdo', 'MD01G1104200' => 'mdo', 'MD02G1205100' => 'mdo', 'MD04G1079200' => 'mdo', 'MD04G1131400' => 'mdo', 'MD07G1121600' => 'mdo', 'MD07G1157300' => 'mdo', 'MD07G1171000' => 'mdo', 'MD12G1144500' => 'mdo', 'Medtr1g094610' => 'mtr', 'Medtr4g021795' => 'mtr', 'Medtr4g023760' => 'mtr', 'Medtr7g118050' => 'mtr', 'MELO3C005582.2' => 'cme', 'MELO3C005989.2' => 'cme', 'MELO3C006192.2' => 'cme', 'MELO3C009248.2' => 'cme', 'MELO3C019817.2' => 'cme', 'Migut.B01625' => 'egut', 'Migut.B01915' => 'egut', 'Migut.F01721' => 'egut', 'Migut.J00314' => 'egut', 'MSTRG.20742' => 'ama', 'MSTRG.8134' => 'ama', 'Nitab4.5_0000096g0010' => 'nta', 'Nitab4.5_0000202g0030' => 'nta', 'Nitab4.5_0000216g0370' => 'nta', 'Nitab4.5_0000457g0230' => 'nta', 'Nitab4.5_0001702g0170' => 'nta', 'Nitab4.5_0003607g0010' => 'nta', 'Nitab4.5_0004917g0020' => 'nta', 'Nitab4.5_0007059g0010' => 'nta', 'Nitab4.5_0007184g0010' => 'nta', 'Nitab4.5_0007346g0020' => 'nta', 'Nn1g00410' => 'nnu', 'Nn1g01252' => 'nnu', 'Nn2g11168' => 'nnu', 'Nn2g13403' => 'nnu', 'Nn2g13760' => 'nnu', 'Nn4g26380' => 'nnu', 'Oeu000806.2' => 'oeu', 'Oeu005788.1' => 'oeu', 'Oeu006900.3' => 'oeu', 'Oeu007797.1' => 'oeu', 'Oeu011932.1' => 'oeu', 'Oeu022739.1' => 'oeu', 'Oeu037918.1' => 'oeu', 'Oeu055490.2' => 'oeu', 'Os01g0844400' => 'osa', 'Os02g0819100' => 'osa', 'Os03g0804300' => 'osa', 'Os05g0458000' => 'osa', 'Os07g0467800' => 'osa', 'Os12g0602200' => 'osa', 'Peaxi162Scf00013g03444' => 'pax', 'Peaxi162Scf00094g01120' => 'pax', 'Peaxi162Scf00191g01211' => 'pax', 'Peaxi162Scf00238g01110' => 'pax', 'Peaxi162Scf00330g00719' => 'pax', 'Peaxi162Scf00627g00018' => 'pax', 'PGR031G2686' => 'pgr', 'PGR042G0809' => 'pgr', 'PGR142G0193' => 'pgr', 'PGSC0003DMG400011066' => 'stu', 'PGSC0003DMG400012041' => 'stu', 'PGSC0003DMG400013678' => 'stu', 'PGSC0003DMG400023477' => 'stu', 'PGSC0003DMG400025956' => 'stu', 'PGSC0003DMG401019151' => 'stu', 'Phvul.006G116400' => 'pvu', 'Phvul.007G097300' => 'pvu', 'Phvul.010G015000' => 'pvu', 'Phvul.010G083900' => 'pvu', 'Potri.001G117100' => 'ptr', 'Potri.002G147300' => 'ptr', 'Potri.003G115600' => 'ptr', 'Potri.006G087400' => 'ptr', 'Potri.010G226100' => 'ptr', 'Potri.014G069200' => 'ptr', 'Potri.014G104000' => 'ptr', 'Potri.016G100200' => 'ptr', 'Pp3c10_20450' => 'ppa', 'Pp3c1_42400' => 'ppa', 'Pp3c3_24390' => 'ppa', 'Pp3c3_2860' => 'ppa', 'PRCOL_00003193' => 'pco', 'Prupe.2G144500' => 'ppe', 'Prupe.2G195700' => 'ppe', 'Prupe.2G209800' => 'ppe', 'Prupe.5G080000' => 'ppe', 'Prupe.6G257900' => 'ppe', 'Psat3g001160' => 'psa', 'Psat6g181880' => 'psa', 'Psat7g233720' => 'psa', 'PSO063G7587' => 'pso', 'PSO339G2145' => 'pso', 'PSO339G3369' => 'pso', 'PSO478G2747' => 'pso', 'PSO513G0140' => 'pso', 'PSO782G1614' => 'pso', 'PSO782G4889' => 'pso', 'PSO782G5485' => 'pso', 'PSO801G0241' => 'pso', 'QL07p048854' => 'qlo', 'QL08p046745' => 'qlo', 'QL08p052606' => 'qlo', 'QL08p053414' => 'qlo', 'QL08p054868' => 'qlo', 'RcHm_v2.0_Chr1g0350251' => 'rch', 'RcHm_v2.0_Chr1g0360851' => 'rch', 'RcHm_v2.0_Chr1g0362791' => 'rch', 'RcHm_v2.0_Chr3g0466281' => 'rch', 'RcHm_v2.0_Chr7g0201481' => 'rch', 'Rhsim01G0148600' => 'rsi', 'Rhsim05G0194400' => 'rsi', 'Rhsim07G0000700' => 'rsi', 'Rhsim07G0000800' => 'rsi', 'Rhsim07G0027900' => 'rsi', 'Rhsim09G0149500' => 'rsi', 'RhsimUnG0186900' => 'rsi', 'Sabra01G0089900' => 'sbr', 'Sabra02G0114700' => 'sbr', 'Sabra02G0116300' => 'sbr', 'Sabra03G0080100' => 'sbr', 'Sabra08G0024300' => 'sbr', 'Sabra10G0174300' => 'sbr', 'Sabra14G0048900' => 'sbr', 'Sabra14G0076500' => 'sbr', 'SalBow5G2513' => 'sbo', 'Sc01g0002300' => 'sci', 'Sc01g0004450' => 'sci', 'Sc06g0001680' => 'sci', 'Sc23g0003580' => 'sci', 'Sed0000913' => 'sed', 'Sed0001655' => 'sed', 'Sed0007745' => 'sed', 'Sed0010951' => 'sed', 'Sed0017599' => 'sed', 'Sed0021405' => 'sed', 'Sed0022810' => 'sed', 'SEGI_07099' => 'sgi', 'SEGI_11931' => 'sgi', 'SEGI_13187' => 'sgi', 'SEGI_29958' => 'sgi', 'SEGI_36351' => 'sgi', 'SGA_v2.0_scaffold126G33770' => 'sas', 'SGA_v2.0_scaffold153G37003' => 'sas', 'SGA_v2.0_scaffold2G01359' => 'sas', 'SGA_v2.0_scaffold5G03064' => 'sas', 'SGA_v2.0_scaffold95G28903' => 'sas', 'SHI12701' => 'shi', 'SHI26410' => 'shi', 'SHI38997' => 'shi', 'SHI53759' => 'shi', 'SHI53886' => 'shi', 'SHI54714' => 'shi', 'SMO011G0041' => 'smo', 'SMO146G0251' => 'smo', 'SMO160G0004' => 'smo', 'SMO174G0057' => 'smo', 'SMO244G0089' => 'smo', 'SMO296G0011' => 'smo', 'Solyc01g091280.3' => 'sly', 'Solyc05g047610.3' => 'sly', 'Solyc05g047640.3' => 'sly', 'Solyc05g055630.3' => 'sly', 'Solyc10g018160.2' => 'sly', 'Solyc10g084820.2' => 'sly', 'Solyc10g086565.2' => 'sly', 'Sopen01g037030' => 'spe', 'Sopen05g027920' => 'spe', 'Sopen05g034070' => 'spe', 'Sopen10g007260' => 'spe', 'Sopen10g034260' => 'spe', 'Sopen10g035950' => 'spe', 'Sp3g07710' => 'spa', 'Sp4g27420' => 'spa', 'Sp5g02450' => 'spa', 'Sp6g01280' => 'spa', 'Sp6g38480' => 'spa', 'Sp7g20780' => 'spa', 'TAR374G1413' => 'tar', 'TAR623G1777' => 'tar', 'TAR629G2370' => 'tar', 'TAR633G1759' => 'tar', 'TAR636G3387' => 'tar', 'THA.LOC104802447' => 'tha', 'THA.LOC104813916' => 'tha', 'THA.LOC104816423' => 'tha', 'THA.LOC104817246' => 'tha', 'THA.LOC104825895' => 'tha', 'Thecc.01G335200' => 'tca', 'Thecc.01G377400' => 'tca', 'Thecc.03G262200' => 'tca', 'Thecc.05G036800' => 'tca', 'Thecc.10G080500' => 'tca', 'Thecc.10G080800' => 'tca', 'Thhalv10001560m.g' => 'esa', 'Thhalv10006120m.g' => 'esa', 'Thhalv10014375m.g' => 'esa', 'Thhalv10021264m.g' => 'esa', 'Thhalv10028856m.g' => 'esa', 'TPR.G1914' => 'tpr', 'TPR.G4757' => 'tpr', 'TPR.G5595' => 'tpr', 'TWI14G0952' => 'twi', 'TWI14G1307' => 'twi', 'TWI38G2143' => 'twi', 'TWI59G0826' => 'twi', 'TWI77G0527' => 'twi', 'TWI81G0150' => 'twi', 'unitig_21.g21018' => 'ugi', 'unitig_26.g9725' => 'ugi', 'unitig_744.g24653' => 'ugi', 'unitig_749.g13778' => 'ugi', 'unitig_899.g15035' => 'ugi', 'vmacro04296' => 'vma', 'vmacro04852' => 'vma', 'vmacro13404' => 'vma', 'vmacro20169' => 'vma', 'vmacro21014' => 'vma', 'VMungo0331G0237' => 'vmu', 'VMungo0331G0706' => 'vmu', 'VMungo0331G1361' => 'vmu', 'VMungo0331G1489' => 'vmu', 'VMungo0540G1037' => 'vmu', 'VMungo0720G2487' => 'vmu', 'VMungo0720G2721' => 'vmu', 'Zm00001eb086860' => 'zma', 'Zm00001eb104760' => 'zma', 'Zm00001eb148220' => 'zma', 'Zm00001eb259030' => 'zma', 'Zm00001eb289590' => 'zma', 'Zm00001eb420150' => 'zma' ) $gf_id = 'HOM05D000968' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000968' ) $data_identifier = 'HOM05D000968' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 19, 'bol' => (int) 9, 'bra' => (int) 12, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 5, 'ccan' => (int) 7, 'cde' => (int) 5, 'cfa' => (int) 8, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 4, 'dca' => (int) 5, 'din' => (int) 5, 'dzi' => (int) 12, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 25, 'fve' => (int) 5, 'gma' => (int) 9, 'ghi' => (int) 18, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 7, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 5, 'sun' => (int) 2, 'lal' => (int) 9, 'lja' => (int) 5, 'lonja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 9, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 2, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 8, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 3, 'stu' => (int) 6, 'pvu' => (int) 4, 'ptr' => (int) 8, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 3, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 1, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 5, 'sas' => (int) 5, 'shi' => (int) 6, 'smo' => (int) 6, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 3, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420150' $species_info = array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) $local_species = 'zma' $disabled = '' $selected = '' $num_hits = (int) 1